# Patent

## Title
Nucleic acid and amino acid sequences relating to Staphylococcus epidermidis for diagnostics and therapeutics

## Abstract

The invention provides isolated polypeptide and nucleic acid sequences derived from Staphylococcus epidermidis that are useful in diagnosis and therapy of pathological conditions; antibodies against the polypeptides; and methods for the production of the polypeptides. The invention also provides methods for the detection, prevention and treatment of pathological conditions resulting from bacterial infection.

## Background
RELATED APPLICATIONS
This application is a Continuation-in-Part which claims priority to U.S. Application No. 09/134,001, filed Aug. 13, 1998, now U.S. Pat. No. 6,380,370, issued Apr. 30, 2002, which claims the benefit of both U.S. Provisional Application No. 60/064,964, filed Nov. 8, 1997 and U.S. Provisional Application No. 60/055,779, filed Aug. 14, 1997, the contents of all of which are incorporated in their entirety.


BACKGROUND OF THE INVENTION
Staphylococcus epidermidis (S. epidermidis) is a species of staphylococcal bacteria that are Gram-positive, nonmotile, nonpigmented and coagulase-negative cocci, which are mainly found on the skin and mucous membrane of warm-blooded animals. Their large numbers and ubiquitous distribution result in frequent contamination of specimens collected from or through the skin, making these organisms amongst the most frequently isolated in the clinical laboratory. In the past, S. epidermidis was rarely the cause of significant infections, but with the increasing use of implanted catheters and prosthetic devices, it has emerged as an important agent of hospital-acquired infections and has been recognized as a true pathogen (Lowy and Hammer, 1983, Ann Intern Med, 99: 834–9; Blum and Rodvold, 1987, Clin Pharm, 6: 464–75; Hamory, Parisi et al., 1987, Am J Infect Control, 15: 59–74). S. epidermidis is a major cause of infection of indwelling foreign devices such as, orthopedic devices, intravenous catheters, prosthetic heart valves, central nervous system shunts, and peritoneal dialysis catheters (Blum and Rodvold, 1987, Clin Pharm, 6: 464–75; Archer, 1988, J Antimicrob Chemother, 21 Suppl C: 133–8)(Lowy and Hammer, 1983, Ann Intern Med, 99: 834–9; Hamory, Parisi et al., Staphylococcus 1987, Am J Infect Control, 15: 59–74). In addition S. epidermidis is a common cause of postoperative wound infections, bacteremia of immunosuppressed patients, intensive-care unit patients and premature newborns (MacLowry, 1983, Am J Med, 75: 2–6)(Eykyn, 1988, Lancet, 1: 100–4). According to a national survey (Centers for Disease Control, 1981:7) S. epidermidis caused 8.9% of primary nosocomial bacteremias.
Treatment of S. epidermidis infections remains difficult because of the occult nature, association with foreign bodies, and frequent resistance to antimicrobial agents. Ordinarily, S. epidermidis is an organism with low virulence, however breaks in host defense caused by surgery, catheter placement, prosthesis insertion or immuno-suppression is prerequisite for infection. The presence of foreign bodies itself facilitates infection by protecting the organism from elimination by host defenses or antimicrobial therapy (Lowy and Hammer, 1983, Ann Intern Med, 99: 834–9). Furthermore, S. epidermidis due to its ability to produce extracellular polysaccharide material or slime, may be uniquely adapted to adhere to smooth surfaces such as plastics or metal. Slime producing strains of S. epidermidis appear to be more pathogenic than non-slime producing strains (Christensen, Simpson et al., 1983, Infect Immun, 40: 407–10; Peters and Pulverer, 1984, J Antimicrob Chemother, 14 Suppl D: 67–71; Gallimore, Gagnon et al., 1991, J Infect Dis, 164: 1220–3). This property and many factors are involved in the pathogenesis of device associated infections. Despite the increased recognition as a pathogen, S. epidermidis infections are difficult to diagnose. Differentiating clinically important from clinically unimportant bacterial isolates of S. epidermidis is difficult because of the high rate of contamination.
Although laboratory isolates of S. epidermidis have generally been susceptible to semisynthetic penicillins (methicillin, nafcillin, oxacillin), cephalosporins, amino-glycosides, vancomycin and rafampin, recent clinical isolates have had an increased resistance. Recent reports (Karchmer, 1985, Am J Med, 78: 116–27; Karchmer, 1991, J Hosp Infect, 18 Suppl A: 355–66) show that 83% of S. epidermidis isolates from patients with prosthetic valve endocarditis are methicillin resistant and 32% are gentamicin resistant as well. Multi-drug resistant staphylococci have emerged in the midst of high level use of penicillin and aminoglycosides (Centers for Disease Control and Prevention, 1993 MMWR 42:597; and S. Handwerger et al., 1993, Clin Infect Dis 16:750).
The use of antibiotics for therapeutics and prophylactic purposes, promotes the selection of resistant organisms and the spread of antibiotic resistance genes among bacteria. Previous studies have shown that virtually all staphylococci carry some antibiotic resistance genes on naturally occurring extrachromosomal mobile genetic elements, such as the plasmids. Survey and analysis of plasmids in clinical isolates of S. epidermidis have shown that more that 80% of isolates carry plasmids and in several cases more than one plasmid (Archer et al., 1982, Infect Immun, 35:627–632; Kloos et al., 1981, Can J Microbiol, 27:271–278; Moller, 1988, J Hosp Infect 12:19–27). Though the most important forms of resistance has been the inactivation of antibiotics, particularly penicillins and cephalosporins, recent clinical isolates have resistance to one or more of the following antibiotics, methicillin, tetracycline, erythromycin, gentamycin, kanamycin and chloramphenicol. In fact due to the wide spread occurrence of plasmids and their involvement in antibiotic resistance, plasmid profiling has been used as an epidemiological reagent to study nosocomial infections. This invention relates to isolated nucleic acids and polypeptides derived from S. epidermidis>plasmids that are useful as molecular targets for diagnosis, prophylaxis and treatment of pathological conditions, as well as materials and methods for the diagnosis, prevention, and amelioration of pathological conditions resulting from bacterial infection.
These concerns point to the need for diagnostic tools and therapeutics aimed at proper identification of strain and eradication of virulence. The design of vaccines that will limit the spread of infection and halt transfer of resistance factors is very desirable.
SUMMARY OF THE INVENTION
The present invention fulfills the need for diagnostic tools and therapeutics by providing bacterial-specific compositions and methods for detecting Staphylococcus species including S. epidermidis, as well as compositions and methods useful for treating and preventing Staphylococcus infection, in particular, S. epidermidis infection, in vertebrates including mammals.
The present invention encompasses isolated nucleic acids and polypeptides derived from S. epidermidis that are useful as reagents for diagnosis of bacterial disease, components of effective antibacterial vaccines, and/or as targets for antibacterial drugs including anti-S. epidermidis drugs. They can also be used to detect the presence of S. epidermidis and other Staphylococcus species in a sample; and in screening compounds for the ability to interfere with the S. epidermidis life cycle or to inhibit S. epidermidis infection. They also have use as biocontrol agents for plants.
In one aspect, the invention features compositions of nucleic acids corresponding to entire coding sequences of S. epidermidis proteins (SEQ ID NO: 1–SEQ ID NO: 3702), including surface or secreted proteins or parts thereof, nucleic acids capable of binding mRNA from S. epidermidis proteins to block protein translation, and methods for producing S. epidermidis proteins or parts thereof using peptide synthesis and recombinant DNA techniques. This invention also features antibodies and nucleic acids useful as probes to detect S. epidermidis infection. In addition, vaccine compositions and methods for the protection or treatment of infection by S. epidermidis are within the scope of this invention.
In another aspect, the invention relates to the nucliec acids corresponding to 2 naturally occurring plasmids of S. epidermidis (SEQ ID NO: 3703–SEQ ID NO: 3772) and the corresponding amino acid sequences (SEQ ID NO: 7475–SEQ ID NO: 7544).
The nucleotide sequences provided in SEQ ID NO: 1–SEQ ID NO: 3772, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to a sequence contained within SEQ ID NO: 1–SEQ ID NO: 3772 may be “provided” in a variety of medias to facilitate use thereof. As used herein, “provided” refers to a manufacture, other than an isolated nucleic acid molecule, which contains a nucleotide sequence of the present invention, i.e., the nucleotide sequence provided in SEQ ID NO: 1–SEQ ID NO: 3772, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to a sequence contained within SEQ ID NO: 1–SEQ ID NO: 3772. Uses for and methods for providing nucleotide sequences in a variety of media is well known in the art (see e.g., EPO Publication No. EP 0 756 006).
In one application of this embodiment, a nucleotide sequence of the present invention can be recorded on computer readable media. As used herein, “computer readable media” refers to any media which can be read and accessed directly by a computer. Such media include, but are not limited to: magnetic storage media, such as floppy discs, hard disc storage media, and magnetic tape; optical storage media such as CD-ROM; electrical storage media such as RAM and ROM; and hybrids of these categories such as magnetic/optical storage media. A person skilled in the art can readily appreciate how any of the presently known computer readable media can be used to create a manufacture comprising computer readable media having recorded thereon a nucleotide sequence of the present invention.
As used herein, “recorded” refers to a process for storing information on computer readable media. A person skilled in the art can readily adopt any of the presently known methods for recording information on computer readable media to generate manufactures comprising the nucleotide sequence information of the present invention.
A variety of data storage structures are available to a person skilled in the art for creating a computer readable media having recorded thereon a nucleotide sequence of the present invention. The choice of the data storage structure will generally be based on the means chosen to access the stored information. In addition, a variety of data processor programs and formats can be used to store the nucleotide sequence information of the present invention on computer readable media. The sequence information can be represented in a word processing text file, formatted in commercially-available software such as WordPerfect and Microsoft Word, or represented in the form of an ASCII file, stored in a database application, such as DB2, Sybase, Oracle, or the like. A person skilled in the art can readily adapt any number of data processor structuring formats (e.g. text file or database) in order to obtain computer readable media having recorded thereon the nucleotide sequence information of the present invention.
By providing the nucleotide sequence of SEQ ID NO: 1–SEQ ID NO: 3772, a fragment thereof, or a nucleotide sequence at least about 99.5% identical to SEQ ID NO: 1-SEQ ID NO: 3772 in computer readable form, a person skilled in the art can routinely access the coding sequence information for a variety of purposes. Computer software is publicly available which allows a person skilled in the art to access sequence information provided in a computer readable media. Examples of such computer software include programs of the “Staden Package”, “DNA Star”, “MacVector”, GCG “Wisconsin Package” (Genetics Computer Group, Madison, Wis.) and “NCBI Toolbox” (National Center For Biotechnology Information). Suitable programs are described, for example, in Martin J. Bishop, ed., Guide to Human Genome Computing, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski, The Internet and the New Biology: Tools for Genomic and Molecular Research, American Society for Microbiology, Washington, D.C. (1997).
Computer algorithms enable the identification of S. epidermidis open reading frames (ORFs) within SEQ ID NO: 1–SEQ ID NO: 3772 which contain homology to ORFs or proteins from other organisms. Examples of such similarity-search algorithms include the BLAST [Altschul et al., J. Mol. Biol. 215:403–410 (1990)] and Smith-Waterman [Smith and Waterman (1981) Advances in Applied Mathematics, 2:482–489] search algorithms. Suitable search algorithms are described, for example, in Martin J. Bishop, ed., Guide to Human Genome Computing, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski, The Internet and the New Biology: Tools for Genomic and Molecular Research, American Society for Microbiology, Washington, D.C. (1997). Such algorithms are utilized on computer systems as exemplified below. The ORFs so identified represent protein encoding fragments within the S. epidermidis genome and S. epidermidis plasmid sand are useful in producing commercially important proteins such as enzymes used in fermentation reactions and in the production of commercially useful metabolites.
The present invention further provides systems, particularly computer-based systems, which contain the sequence information described herein. Such systems are designed to identify commercially important fragments of the S. epidermidis genome and plasmids. As used herein, “a computer-based system” refers to the hardware means, software means, and data storage means used to analyze the nucleotide sequence information of the present invention. The minimum hardware means of the computer-based systems of the present invention comprises a central processing unit (CPU), input means, output means, and data storage means. A person skilled in the art can readily appreciate that any one of the currently available computer-based systems is suitable for use in the present invention. The computer- based systems of the present invention comprise a data storage means having stored therein a nucleotide sequence of the present invention and the necessary hardware means and software means for supporting and implementing a search means. As used herein, “data storage means” refers to memory which can store nucleotide sequence information of the present invention, or a memory access means which can access manufactures having recorded thereon the nucleotide sequence information of the present invention.
As used herein, “search means” refers to one or more programs which are implemented on the computer-based system to compare a target sequence or target structural motif with the sequence information stored within the data storage means. Search means are used to identify fragments or regions of the S. epidermidis genome and plasmids which are similar to, or “match”, a particular target sequence or target motif. A variety of known algorithms are known in the art and have been disclosed publicly, and a variety of commercially available software for conducting homology-based similarity searches are available and can be used in the computer-based systems of the present invention. Examples of such software includes, but is not limited to, FASTA (GCG Wisconsin Package), Bic_SW (Compugen Bioccelerator), BLASTN2, BLASTP2, BLASTX2 (NCBI) and Motifs (GCG). Suitable software programs are described, for example, in Martin J. Bishop, ed., Guide to Human Genome Computing, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski, The Internet and the New Biology: Tools for Genomic and Molecular Research, American Society for Microbiology, Washington, D.C. (1997). A person skilled in the art can readily recognize that any one of the available algorithms or implementing software packages for conducting homology searches can be adapted for use in the present computer-based systems.
As used herein, a “target sequence” can be any DNA or amino acid sequence of six or more nucleotides or two or more amino acids. A person skilled in the art can readily recognize that the longer a target sequence is, the less likely a target sequence will be present as a random occurrence in the database. The most preferred sequence length of a target sequence is from about 10 to 100 amino acids or from about 30 to 300 nucleotide residues. However, it is well recognized that many genes are longer than 500 amino acids, or 1.5 kb in length, and that commercially important fragments of the S. epidermidis genome and plasmids from S. epidermidis, such as sequence fragments involved in gene expression and protein processing, will often be shorter than 30 nucleotides.
As used herein, “a target structural motif,” or “target motif,” refers to any rationally selected sequence or combination of sequences in which the sequence(s) are chosen based on a specific functional domain or three-dimensional configuration which is formed upon the folding of the target polypeptide. There are a variety of target motifs known in the art. Protein target motifs include, but are not limited to, enzymatic active sites, membrane-spanning regions, and signal sequences. Nucleic acid target motifs include, but are not limited to, promoter sequences, hairpin structures and inducible expression elements (protein binding sequences).
A variety of structural formats for the input and output means can be used to input and output the information in the computer-based systems of the present invention. A preferred format for an output means ranks fragments of the S. epidermidis genome and plasmids possessing varying degrees of homology to the target sequence or target motif. Such presentation provides a person skilled in the art with a ranking of sequences which contain various amounts of the target sequence or target motif and identifies the degree of homology contained in the identified fragment.
A variety of comparing means can be used to compare a target sequence or target motif with the data storage means to identify sequence fragments of the S. epidermidis genome and plasmids. In the present examples, implementing software which implement the BLASTP2 and bic_SW algorithms (Altschul et al., J. Mol. Biol. 215:403–410 (1990); Compugen Biocellerator) was used to identify open reading frames within the S. epidermidis genome and plasmids. A person skilled in the art can readily recognize that any one of the publicly available homology search programs can be used as the search means for the computer-based systems of the present invention. Suitable programs are described, for example, in Martin J. Bishop, ed., Guide to Human Genome Computing, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski, The Internet and the New Biology: Tools for Genomic and Molecular Research, American Society for Microbiology, Washington, D.C. (1997).
The invention features S. epidermidis polypeptides, preferably a substantially pure preparation of an S. epidermidis polypeptide, or a recombinant S. epidermidis polypeptide. In preferred embodiments: the polypeptide has biological activity; the polypeptide has an amino acid sequence at least about 60%, 70%, 80%, 90%, 95%, 98%, or 99% identical to an amino acid sequence of the invention contained in the Sequence Listing, preferably it has about 65% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing, and most preferably it has about 92% to about 99% sequence identity with an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the polypeptide is at least about 5, 10, 20, 50, 100, or 150 amino acid residues in length; the polypeptide includes at least about 5, preferably at least about 10, more preferably at least about 20, still more preferably at least about 50, 100, or 150 contiguous amino acid residues of the invention contained in the Sequence Listing. In yet another preferred embodiment, the amino acid sequence which differs in sequence identity by about 7% to about 8% from the S. epidermidis amino acid sequences of the invention contained in the Sequence Listing is also encompassed by the invention.
In preferred embodiments: the S. epidermidis polypeptide is encoded by a nucleic acid of the invention contained in the Sequence Listing, or by a nucleic acid having at least about 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a nucleic acid of the invention contained in the Sequence Listing.
In a preferred embodiment, the subject S. epidermidis polypeptide differs in amino acid sequence at about 1, 2, 3, 5, 10 or more residues from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that the S. epidermidis polypeptide exhibits an S. epidermidis biological activity, e.g., the S. epidermidis polypeptide retains a biological activity of a naturally occurring S. epidermidis enzyme.
In preferred embodiments, the polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.
In yet other preferred embodiments, the S. epidermidis polypeptide is a recombinant fusion protein having a first S. epidermidis polypeptide portion and a second polypeptide portion, e.g., a second polypeptide portion having an amino acid sequence unrelated to S. epidermidis. The second polypeptide portion can be, e.g., any of glutathione-S-transferase, a DNA binding domain, or a polymerase activating domain. In preferred embodiment the fusion protein can be used in a two-hybrid assay.
Polypeptides of the invention include those which arise as a result of alternative transcription events, alternative RNA splicing events, and alternative translational and postranslational events.
In a preferred embodiment, the encoded S. epidermidis polypeptide differs (e.g., by amino acid substitution, addition or deletion of at least one amino acid residue) in amino acid sequence at about 1, 2, 3, 5, 10 or more residues, from a sequence of the invention contained in the Sequence Listing. The differences, however, are such that: the S. epidermidis encoded polypeptide exhibits an S. epidermidis biological activity, e.g., the encoded S. epidermidis enzyme retains a biological activity of a naturally occurring S. epidermidis. 
In preferred embodiments, the encoded polypeptide includes all or a fragment of an amino acid sequence of the invention contained in the Sequence Listing; fused, in reading frame, to additional amino acid residues, preferably to residues encoded by genomic DNA 5′ or 3′ to the genomic DNA which encodes a sequence of the invention contained in the Sequence Listing.
The S. epidermidis strain, 18972, from which genomic sequences have been sequenced, has been deposited on Jul. 10, 1997, in the American Type Culture Collection and assigned the ATCC designation # 55998.
Included in the invention are: allelic variations; natural mutants; induced mutants; proteins encoded by DNA that hybridize under high or low stringency conditions to a nucleic acid which encodes a polypeptide of the invention contained in the Sequence Listing (for definitions of high and low stringency see Current Protocols in Molecular Biology, John Wiley & Sons, New York, 1989, 6.3.1–6.3.6, hereby incorporated by reference); and, polypeptides specifically bound by antisera to S. epidermidis polypeptides, especially by antisera to an active site or binding domain of S. epidermidis polypeptide. The invention also includes fragments, preferably biologically active fragments. These and other polypeptides are also referred to herein as S. epidermidis polypeptide analogs or variants.
The invention further provides nucleic acids, e.g., RNA or DNA, encoding a polypeptide of the invention. This includes double stranded nucleic acids as well as coding and antisense single strands.
In preferred embodiments, the subject S. epidermidis nucleic acid will include a transcriptional regulatory sequence, e.g., at least one of a transcriptional promoter or transcriptional enhancer sequence, operably linked to the S. epidermidis gene sequence, e.g., to render the S. epidermidis gene sequence suitable for expression in a recombinant host cell.
In yet a further preferred embodiment, the nucleic acid which encodes an S. epidermidis polypeptide of the invention, hybridizes under stringent conditions to a nucleic acid probe corresponding to at least about 8 consecutive nucleotides of the invention contained in the Sequence Listing; more preferably to at least about 12 consecutive nucleotides of the invention contained in the Sequence Listing; still more preferably to at least about 20 consecutive nucleotides of the invention contained in the Sequence Listing; most preferably to at least about 40 consecutive nucleotides of the invention contained in the Sequence Listing.
In another aspect, the invention provides a substantially pure nucleic acid having a nucleotide sequence which encodes an S. epidermidis polypeptide. In preferred embodiments: the encoded polypeptide has biological activity; the encoded polypeptide has an amino acid sequence at least about 60%, 70%, 80%, 90%, 95%, 98% or 99% homologous to an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide has an amino acid sequence essentially the same as an amino acid sequence of the invention contained in the Sequence Listing; the encoded polypeptide is at least about 5, 10, 20, 50, 100, or 150 amino acids in length; the encoded polypeptide comprises at least about 5, preferably at least about 10, more preferably at least about 20, still more preferably at least about 50, 100, or 150 contiguous amino acids of the invention contained in the Sequence Listing.
In another aspect, the invention encompasses: a vector including a nucleic acid which encodes an S. epidermidis polypeptide or an S. epidermidis polypeptide variant as described herein; a host cell transfected with the vector; and a method of producing a recombinant S. epidermidis polypeptide or S. epidermidis polypeptide variant; including culturing the cell, e.g., in a cell culture medium, and isolating an S. epidermidis or S. epidermidis polypeptide variant, e.g., from the cell or from the cell culture medium.
One embodiment of the invention is directed to substantially isolated nucleic acids. Nucleic acids of the invention include sequences comprising at least about 8 nucleotides in length, more preferably at least about 12 nucleotides in length, even more preferably at least about 15–20 nucleotides in length, that correspond to a subsequence of any one of SEQ ID NO: 1–SEQ ID NO: 3772 or complements thereof. Alternatively, the nucleic acids comprise sequences contained within any ORF (open reading frame), including a complete protein- coding sequence, of which any of SEQ ID NO: 1–SEQ ID NO: 3772 forms a part. The invention encompasses sequence-conservative variants and function-conservative variants of these sequences. The nucleic acids may be DNA, RNA, DNA/RNA duplexes, protein- nucleic acid (PNA), or derivatives thereof.
In another aspect, the invention features a purified recombinant nucleic acid having at least about 50%, 60%, 70%, 80%, 90%, 95%, 98%, or 99% homology with a sequence of the invention contained in the Sequence Listing.
The invention also encompasses recombinant DNA (including DNA cloning and expression vectors) comprising these S. epidermidis-derived sequences; host cells comprising such DNA, including fungal, bacterial, yeast, plant, insect, and mammalian host cells; and methods for producing expression products comprising RNA and polypeptides encoded by the S. epidermidis sequences. These methods are carried out by incubating a host cell comprising an S. epidermidis-derived nucleic acid sequence under conditions in which the sequence is expressed. The host cell may be native or recombinant. The polypeptides can be obtained by (a) harvesting the incubated cells to produce a cell fraction and a medium fraction; and (b) recovering the S. epidermidis polypeptide from the cell fraction, the medium fraction, or both. The polypeptides can also be made by in vitro translation.
In another aspect, the invention features nucleic acids capable of binding mRNA of S. epidermidis. Such nucleic acid is capable of acting as antisense nucleic acid to control the translation of mRNA of S. epidermidis. A further aspect features a nucleic acid which is capable of binding specifically to an S. epidermidis nucleic acid. These nucleic acids are also referred to herein as complements and have utility as probes and as capture reagents.
In another aspect, the invention features an expression system comprising an open reading frame corresponding to S. epidermidis nucleic acid. The nucleic acid further comprises a control sequence compatible with an intended host. The expression system is useful for making polypeptides corresponding to S. epidermidis nucleic acid.
In another aspect, the invention encompasses: a vector including a nucleic acid which encodes an S. epidermidis polypeptide or an S. epidermidis polypeptide variant as described herein; a host cell transfected with the vector; and a method of producing a recombinant S. epidermidis polypeptide or S. epidermidis polypeptide variant; including culturing the cell, e.g., in a cell culture medium, and isolating the S. epidermidis or S. epidermidis polypeptide variant, e.g., from the cell or from the cell culture medium.
In yet another embodiment of the invention encompasses reagents for detecting bacterial infection, including S. epidermidis infection, which comprise at least one S. epidermidis-derived nucleic acid defined by any one of SEQ ID NO: 1–SEQ ID NO: 3772, or sequence-conservative or function-conservative variants thereof. Alternatively, the diagnostic reagents comprise nucleotide sequences that are contained within any open reading frames (ORFs), including preferably complete protein-coding sequences, contained within any of SEQ ID NO: 1–SEQ ID NO: 3772, or polypeptide sequences contained within any of SEQ ID NO: 3773–SEQ ID NO: 7544, or polypeptides of which any of the above sequences forms a part, or antibodies directed against any of the above peptide sequences or function- conservative variants and/or fragments thereof.
The invention further provides antibodies, preferably monoclonal antibodies, which specifically bind to the polypeptides of the invention. Methods are also provided for producing antibodies in a host animal. The methods of the invention comprise immunizing an animal with at least one S. epidermidis-derived immunogenic component, wherein the immunogenic component comprises one or more of the polypeptides encoded by any one of SEQ ID NO: 1–SEQ ID NO: 3772 or sequence-conservative or function-conservative variants thereof; or polypeptides that are contained within any ORFs, including complete protein-coding sequences, of which any of SEQ ID NO: 1–SEQ ID NO: 3772 forms a part; or polypeptide sequences contained within any of SEQ ID NO: 3773–SEQ ID NO: 7544; or polypeptides of which any of SEQ ID NO: 3773–SEQ ID NO: 7544 forms a part. Host animals include any warm blooded animal, including without limitation mammals and birds. Such antibodies have utility as reagents for immunoassays to evaluate the abundance and distribution of S. epidermidis-specific antigens.
In yet another aspect, the invention provides diagnostic methods for detecting S. epidermidis antigenic components or anti-S. epidermidis antibodies in a sample. S. epidermidis antigenic components may be detected by known processes, including but not limited to detection by a process comprising: (i) contacting a sample suspected to contain a bacterial antigenic component with a bacterial-specific antibody, under conditions in which a stable antigen-antibody complex can form between the antibody and bacterial antigenic components in the sample; and (ii) detecting any antigen-antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of at least one bacterial antigenic component in the sample. In different embodiments of this method, the antibodies used are directed against a sequence encoded by any of SEQ ID NO: 1–SEQ ID NO: 3772 or sequence-conservative or function-conservative variants thereof, or against a polypeptide sequence contained in any of SEQ ID NO: 3773–SEQ ID NO: 7544 or function- conservative variants thereof.
In yet another aspect, the invention provides a method for detecting antibacterial- specific antibodies in a sample, which comprises: (i) contacting a sample suspected to contain antibacterial-specific antibodies with an S. epidermidis antigenic component, under conditions in which a stable antigen-antibody complex can form between the S. epidermidis antigenic component and antibacterial antibodies in the sample; and (ii) detecting any antigen- antibody complex formed in step (i), wherein detection of an antigen-antibody complex indicates the presence of antibacterial antibodies in the sample. In different embodiments of this method, the antigenic component is encoded by a sequence contained in any of SEQ ID NO: 1–SEQ ID NO: 3772 or sequence-conservative and function-conservative variants thereof, or is a polypeptide sequence contained in any of SEQ ID NO: 3773–SEQ ID NO: 7544 or function-conservative variants thereof.
In another aspect, the invention features a method of generating vaccines for immunizing an individual against S. epidermidis The method includes: immunizing a subject with an S. epidermidis polypeptide, e.g., a surface or secreted polypeptide, or a combination of such peptides or active portion(s) thereof, and a pharmaceutically acceptable carrier. Such vaccines have therapeutic and prophylactic utilities.
In another aspect, the invention features a method of evaluating a compound, e.g., a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an S. epidermidis polypeptide. The method includes contacting the compound to be evaluated with an S. epidermidis polypeptide and determining if the compound binds or otherwise interacts with the S. epidermidis polypeptide. Compounds which bind or otherwise interact with S. epidermidis polypeptides are candidates as modulators, including activators and inhibitors, of the bacterial life cycle. These assays can be performed in vitro or in vivo.
In another aspect, the invention features a method of evaluating a compound, e.g., a polypeptide, e.g., a fragment of a host cell polypeptide, for the ability to bind an S. epidermidis nucleic acid, e.g., DNA or RNA. The method includes contacting the compound to be evaluated with an S. epidermidis nucleic acid and determining if the compound binds or otherwise interacts with the S. epidermidis nucleic acid. Compounds which bind S. epidermidis are candidates as modultors, including activators and inhibitors, of the bacterial life cycle. These assays can be performed in vitro or in vivo.
A particularly preferred embodiment of the invention is directed to a method of screening test compounds for anti-bacterial activity, which method comprises: selecting as a target a bacterial specific sequence, which sequence is essential to the viability of a bacterial species; contacting a test compound with said target sequence; and selecting those test compounds which bind to said target sequence as potential anti-bacterial candidates. In one embodiment, the target sequence selected is specific to a single species, or even a single strain, such as, for example, the strain S. epidermidis 18972. In a second embodiment, the target sequence is common to at least two species of bacteria. In a third embodiment, the target sequence is common to a family of bacteria. The target sequence may be a nucleic acid sequence or a polypeptide sequence. Methods employing sequences common to more than one species of microorganism may be used to screen candidates for broad spectrum anti- bacterial activity.
The invention also provides methods for preventing or treating disease caused by certain bacteria, including S. epidermidis, which are carried out by administering to an animal in need of such treatment, in particular a warm-blooded vertebrate, including but not limited to birds and mammals, a compound that specifically inhibits or interferes with the function of a bacterial polypeptide or nucleic acid. In a particularly preferred embodiment, the mammal to be treated is human.


DETAILED DESCRIPTION OF THE INVENTION
The sequences of the present invention include the specific nucleic acid and amino acid sequences set forth in the Sequence Listing that forms a part of the present specification, and which are designated SEQ ID NO: 1–SEQ ID NO: 7544. Use of the terms “SEQ ID NO: 1–SEQ ID NO: 3772”, “SEQ ID NO: 3773–SEQ ID NO: 7544, “the sequences depicted in Table 2”, etc., is intended, for convenience, to refer to each individual SEQ ID NO individually, and is not intended to refer to the genus of these sequences unless such reference would be indicated. In other words, it is a shorthand for listing all of these sequences individually. The invention encompasses each sequence individually, as well as any combination thereof.
Definitions
“Nucleic acid” or “polynucleotide” as used herein refers to purine- and pyrimidine- containing polymers of any length, either polyribonucleotides or polydeoxyribonucleotides or mixed polyribo-polydeoxyribo nucleotides. This includes single- and double-stranded molecules, i.e., DNA—DNA, DNA-RNA and RNA—RNA hybrids, as well as “protein nucleic acids” (PNA) formed by conjugating bases to an amino acid backbone. This also includes nucleic acids containing modified bases.
A nucleic acid or polypeptide sequence that is “derived from” a designated sequence refers to a sequence that corresponds to a region of the designated sequence. For nucleic acid sequences, this encompasses sequences that are homologous or complementary to the sequence, as well as “sequence-conservative variants” and “function-conservative variants.” For polypeptide sequences, this encompasses “function-conservative variants.” Sequence- conservative variants are those in which a change of one or more nucleotides in a given codon position results in no alteration in the amino acid encoded at that position. Function- conservative variants are those in which a given amino acid residue in a polypeptide has been changed without altering the overall conformation and function of the native polypeptide, including, but not limited to, replacement of an amino acid with one having similar physico- chemical properties (such as, for example, acidic, basic, hydrophobic, and the like). “Function-conservative” variants also include any polypeptides that have the ability to elicit antibodies specific to a designated polypeptide.
An “S. epidermidis-derived” nucleic acid or polypeptide sequence may or may not be present in other bacterial species, and may or may not be present in all S. epidermidis strains. This term is intended to refer to the source from which the sequence was originally isolated. Thus, an S. epidermidis-derived polypeptide, as used herein, may be used, e.g., as a target to screen for a broad spectrum antibacterial agent, to search for homologous proteins in other species of bacteria or in eukaryotic organisms such as bacteria humans, etc.
A purified or isolated polypeptide or a substantially pure preparation of a polypeptide are used interchangeably herein and, as used herein, mean a polypeptide that has been separated from other proteins, lipids, and nucleic acids with which it naturally occurs. Preferably, the polypeptide is also separated from substances, e.g., antibodies or gel matrix, e.g., polyacrylamide, which are used to purify it. Preferably, the polypeptide constitutes at least about 10, 20, 50 70, 80 or 95% dry weight of the purified preparation. Preferably, the preparation contains sufficient polypeptide to allow protein sequencing; at least about 1, 10, or preferably 100 mg of polypeptide.
A purified preparation of cells refers to, in the case of plant or animal cells, an in vitro preparation of cells and not an entire intact plant or animal. In the case of cultured cells or microbial cells, it consists of a preparation of at least about 10%, more preferably at least about 50%, of the subject cells.
A purified or isolated or a substantially pure nucleic acid, e.g., a substantially pure DNA, (are terms used interchangeably herein) is a nucleic acid which is one or both of the following: not immediately contiguous with both of the coding sequences with which it is immediately contiguous (i.e., one at the 5′ end and one at the 3′ end) in the naturally-occurring genome and plasmids of the organism from which the nucleic acid is derived; or which is substantially free of a nucleic acid with which it occurs in the organism from which the nucleic acid is derived. The term includes, for example, a recombinant DNA which is incorporated into a vector, e.g., into an autonomously replicating plasmid or virus, or into the genomic DNA of a prokaryote or eukaryote, or which exists as a separate molecule (e.g., a cDNA or a genomic DNA fragment produced by PCR or restriction endonuclease treatment) independent of other DNA sequences. Substantially pure DNA also includes a recombinant DNA which is part of a hybrid gene encoding additional S. epidermidis DNA sequence.
A “contig” as used herein is a nucleic acid representing a continuous stretch of genomic sequence of an organism.
An “open reading frame”, also referred to herein as ORF, is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and can be determined from a stop to stop codon or from a start to stop codon.
As used herein, a “coding sequence” is a nucleic acid which is transcribed into messenger RNA and/or translated into a polypeptide when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a translation start codon at the five prime terminus and a translation stop code at the three prime terminus. A coding sequence can include but is not limited to messenger RNA, synthetic DNA, and recombinant nucleic acid sequences.
A “complement” of a nucleic acid as used herein refers to an anti-parallel or antisense sequence that participates in Watson-Crick base-pairing with the original sequence.
A “gene product” is a protein or structural RNA which is specifically encoded by a gene.
As used herein, the term “probe” refers to a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest. Probes are often associated with or capable of associating with a label. A label is a chemical moiety capable of detection. Typical labels comprise dyes, radioisotopes, luminescent and chemiluminescent moieties, fluorophores, enzymes, precipitating agents, amplification sequences, and the like. Similarly, a nucleic acid, peptide or other chemical entity which specifically binds to a molecule of interest and immobilizes such molecule is referred herein as a “capture ligand”. Capture ligands are typically associated with or capable of associating with a support such as nitro- cellulose, glass, nylon membranes, beads, particles and the like. The specificity of hybridization is dependent on conditions such as the base pair composition of the nucleotides, and the temperature and salt concentration of the reaction. These conditions are readily discernable to one of ordinary skill in the art using routine experimentation.
“Homologous” refers to the sequence similarity or sequence identity between two polypeptides or between two nucleic acid molecules. When a position in both of the two compared sequences is occupied by the same base or amino acid monomer subunit, e.g., if a position in each of two DNA molecules is occupied by adenine, then the molecules are homologous at that position. The percent of homology between two sequences is a function of the number of matching or homologous positions shared by the two sequences divided by the number of positions compared×100. For example, if 6 of 10 of the positions in two sequences are matched or homologous then the two sequences are 60% homologous. By way of example, the DNA sequences ATTGCC and TATGGC share 50% homology. Generally, a comparison is made when two sequences are aligned to give maximum homology.
Nucleic acids are hybridizable to each other when at least one strand of a nucleic acid can anneal to the other nucleic acid under defined stringency conditions. Stringency of hybridization is determined by: (a) the temperature at which hybridization and/or washing is performed; and (b) the ionic strength and polarity of the hybridization and washing solutions. Hybridization requires that the two nucleic acids contain complementary sequences; depending on the stringency of hybridization, however, mismatches may be tolerated. Typically, hybridization of two sequences at high stringency (such as, for example, in a solution of 0.5×SSC, at 65° C.) requires that the sequences be essentially completely homologous. Conditions of intermediate stringency (such as, for example, 2×SSC at 65° C.) and low stringency (such as, for example 2×SSC at 55° C.) require correspondingly less overall complementarity between the hybridizing sequences. (1×SSC is 0.15 M NaCl, 0.015 M Na citrate).
The terms peptides, proteins, and polypeptides are used interchangeably herein.
As used herein, the term “surface protein” refers to all surface accessible proteins, e.g. inner and outer membrane proteins, proteins adhering to the cell wall, and secreted proteins.
A polypeptide has S. epidermidis biological activity if it has one, two or preferably more of the following properties: (1) if when expressed in the course of an S. epidermidis infection, it can promote, or mediate the attachment of S. epidermidis to a cell; (2) it has an enzymatic activity, structural or regulatory function characteristic of an S. epidermidis protein; (3) the gene which encodes it can rescue a lethal mutation in an S. epidermidis gene. A polypeptide has biological activity if it is an antagonist, agonist, or super-agonist of a polypeptide having one of the above-listed properties.
A biologically active fragment or analog is one having an in vivo or in vitro activity which is characteristic of the S. epidermidis polypeptides of the invention contained in the Sequence Listing, or of other naturally occurring S. epidermidis polypeptides, e.g., one or more of the biological activities described herein. Especially preferred are fragments which exist in vivo, e.g., fragments which arise from post transcriptional processing or which arise from translation of alternatively spliced RNA's. Fragments include those expressed in native or endogenous cells as well as those made in expression systems, e.g., in CHO (Chinese Hamster Ovary) cells. Because peptides such as S. epidermidis polypeptides often exhibit a range of physiological properties and because such properties may be attributable to different portions of the molecule, a useful S. epidermidis fragment or S. epidermidis analog is one which exhibits a biological activity in any biological assay for S. epidermidis activity. The fragment or analog possesses about 10%, preferably about 40%, more preferably about 60%, 70%, 80% or 90% or greater of the activity of S. epidermidis, in any in vivo or in vitro assay.
Analogs can differ from naturally occurring S. epidermidis polypeptides in amino acid sequence or in ways that do not involve sequence, or both. Non-sequence modifications include changes in acetylation, methylation, phosphorylation, carboxylation, or glycosylation. Preferred analogs include S. epidermidis polypeptides (or biologically active fragments thereof) whose sequences differ from the wild-type sequence by one or more conservative amino acid substitutions or by one or more non-conservative amino acid substitutions, deletions, or insertions which do not substantially diminish the biological activity of the S. epidermidis polypeptide. Conservative substitutions typically include the substitution of one amino acid for another with similar characteristics, e.g., substitutions within the following groups: valine, glycine; glycine, alanine; valine, isoleucine, leucine; aspartic acid, glutamic acid; asparagine, glutamine; serine, threonine; lysine, arginine; and phenylalanine, tyrosine. Other conservative substitutions can be made in view of the table below.







TABLE 1







CONSERVATIVE AMINO ACID REPLACEMENTS









For Amino Acid
Code
Replace with any of





Alanine
A
D-Ala, Gly, beta-Ala, L-Cys, D-Cys


Arginine
R
D-Arg, Lys, D-Lys, homo-Arg, D-homo-Arg,




Met, Ile, D-Met, D-Ile, Orn, D-Orn


Asparagine
N
D-Asn, Asp, D-Asp, Glu, D-Glu, Gln, D-Gln


Aspartic Acid
D
D-Asp, D-Asn, Asn, Glu, D-Glu, GIn, D-Gln


Cysteine
C
D-Cys, S-Me-Cys, Met, D-Met, Thr, D-Thr


Glutamine
Q
D-Gln, Asn, D-Asn, Glu, D-Glu, Asp, D-Asp


Glutamic Acid
E
D-Glu, D-Asp, Asp, Asn, D-Asn, Gln, D-Gln


Glycine
G
Ala, D-Ala, Pro, D-Pro, β-Ala, Acp


Isoleucine
I
D-Ile, Val, D-Val, Leu, D-Leu, Met, D-Met


Leucine
L
D-Leu, Val, D-Val, Leu, D-Leu, Met, D-Met


Lysine
K
D-Lys, Arg, D-Arg, homo-Arg, D-homo-Arg,




Met, D-Met, Ile, D-Ile, Orn, D-Orn


Methionine
M
D-Met, S-Me-Cys, Ile, D-Ile, Leu, D-Leu, Val,




D-Val


Phenylalanine
F
D-Phe, Tyr, D-Thr, L-Dopa, His, D-His, Trp,




D-Trp, Trans-3, 4, or 5-phenylproline, cis-3, 4,




or 5-phenylproline


Proline
P
D-Pro, L-I-thioazolidine-4-carboxylic acid, D-




or L-1-oxazolidine-4-carboxylic acid


Serine
S
D-Ser, Thr, D-Thr, allo-Thr, Met, D-Met,




Met(O), D-Met(O), L-Cys, D-Cys


Threonine
T
D-Thr, Ser, D-Ser, allo-Thr, Met, D-Met,




Met(O), D-Met(O), Val, D-Val


Tyrosine
Y
D-Tyr, Phe, D-Phe, L-Dopa, His, D-His


Valine
V
D-Val, Leu, D-Leu, Ile, D-Ile, Met, D-Met









Other analogs within the invention are those with modifications which increase peptide stability; such analogs may contain, for example, one or more non-peptide bonds (which replace the peptide bonds) in the peptide sequence. Also included are: analogs that include residues other than naturally occurring L-amino acids, e.g., D-amino acids or non- naturally occurring or synthetic amino acids, e.g., β or γ amino acids; and cyclic analogs.
As used herein, the term “fragment”, as applied to an S. epidermidis analog, will ordinarily be at least about 20 residues, more typically at least about 40 residues, preferably at least about 60 residues in length. Fragments of S. epidermidis polypeptides can be generated by methods known to those skilled in the art. The ability of an Staphylococcus fragment to exhibit a biological activity of S. epidermidis polypeptide can be assessed by methods known to those skilled in the art as described herein. Also included are S. epidermidis polypeptides containing residues that are not required for biological activity of the peptide or that result from alternative mRNA splicing or alternative protein processing events.
An “immunogenic component” as used herein is a moiety, such as an S. epidermidis polypeptide, analog or fragment thereof, that is capable of eliciting a humoral and/or cellular immune response in a host animal.
An “antigenic component” as used herein is a moiety, such as an S. epidermidis polypeptide, analog or fragment thereof, that is capable of binding to a specific antibody with sufficiently high affinity to form a detectable antigen-antibody complex.
The term “antibody” as used herein is intended to include fragments thereof which are specifically reactive with S. epidermidis polypeptides.
As used herein, the term “cell-specific promoter” means a DNA sequence that serves as a promoter, i.e., regulates expression of a selected DNA sequence operably linked to the promoter, and which effects expression of the selected DNA sequence in specific cells of a tissue. The term also covers so-called “leaky” promoters, which regulate expression of a selected DNA primarily in one tissue, but cause expression in other tissues as well.
Misexpression, as used herein, refers to a non-wild type pattern of gene expression. It includes: expression at non-wild type levels, i.e., over or under expression; a pattern of expression that differs from wild type in terms of the time or stage at which the gene is expressed, e.g., increased or decreased expression (as compared with wild type) at a predetermined developmental period or stage; a pattern of expression that differs from wild type in terms of increased expression (as compared with wild type) in a predetermined cell type or tissue type; a pattern of expression that differs from wild type in terms of the splicing size, amino acid sequence, post-translational modification, or biological activity of the expressed polypeptide; a pattern of expression that differs from wild type in terms of the effect of an environmental stimulus or extracellular stimulus on expression of the gene, e.g., a pattern of increased or decreased expression (as compared with wild type) in the presence of an increase or decrease in the strength of the stimulus.
As used herein, “host cells” and other such terms denoting microorganisms or higher eukaryotic cell lines cultured as unicellular entities refers to cells which can become or have been used as recipients for a recombinant vector or other transfer DNA, and include the progeny of the original cell which has been transfected. It is understood by individuals skilled in the art that the progeny of a single parental cell may not necessarily be completely identical in genomic or total DNA compliment to the original parent, due to accident or deliberate mutation.
As used herein, the term “control sequence” refers to a nucleic acid having a base sequence which is recognized by the host organism to effect the expression of encoded sequences to which they are ligated. The nature of such control sequences differs depending upon the host organism; in prokaryotes, such control sequences generally include a promoter, ribosomal binding site, terminators, and in some cases operators; in eukaryotes, generally such control sequences include promoters, terminators and in some instances, enhancers. The term control sequence is intended to include at a minimum, all components whose presence is necessary for expression, and may also include additional components whose presence is advantageous, for example, leader sequences.
As used herein, the term “operably linked” refers to sequences joined or ligated to function in their intended manner. For example, a control sequence is operably linked to coding sequence by ligation in such a way that expression of the coding sequence is achieved under conditions compatible with the control sequence and host cell.
The “metabolism” of a substance, as used herein, means any aspect of the expression, function, action, or regulation of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modifications of the substance. The metabolism of a substance includes modifications, e.g., covalent or non-covalent modification, the substance induces in other substances. The metabolism of a substance also includes changes in the distribution of the substance. The metabolism of a substance includes changes the substance induces in the distribution of other substances.
A “sample” as used herein refers to a biological sample, such as, for example, tissue or fluid isloated from an individual (including without limitation plasma, serum, cerebrospinal fluid, lymph, tears, saliva and tissue sections) or from in vitro cell culture constituents, as well as samples from the environment.
Technical and scientific terms used herein have the meanings commonly understood by one of ordinary skill in the art to which the present invention pertains, unless otherwise defined. Reference is made herein to various methodologies known to those of skill in the art. Publications and other materials setting forth such known methodologies to which reference is made are incorporated herein by reference in their entireties as though set forth in full. The practice of the invention will employ, unless otherwise indicated, conventional techniques of chemistry, molecular biology, microbiology, recombinant DNA, and immunology, which are within the skill of the art. Such techniques are explained fully in the literature. See e.g., Sambrook, Fritsch, and Maniatis, Molecular Cloning; Laboratory Manual 2nd ed. (1989); DNA Cloning, Volumes I and II (D. N Glover ed. 1985); Oligonucleotide Synthesis (M. J. Gait ed, 1984); Nucleic Acid Hybridization (B. D. Hames & S. J. Higgins eds. 1984); the series, Methods in Enzymoloqy (Academic Press, Inc.), particularly Vol. 154 and Vol. 155 (Wu and Grossman, eds.); PCR-A Practical Approach (McPherson, Quirke, and Taylor, eds., 1991); Immunology, 2d Edition, 1989, Roitt et al., C. V. Mosby Company, and New York; Advanced Immunology, 2d Edition, 1991, Male et al., Grower Medical Publishing, New York; DNA Cloning: A Practical Approach, Volumes I and II, 1985 (D. N. Glover ed.); Oligonucleotide Synthesis, 1984, (M. L. Gait ed); Transcription and Translation, 1984 (Hames and Higgins eds.); Animal Cell Culture, 1986 (R. I. Freshney ed.); Immobilized Cells and Enzymes, 1986 (IRL Press); Perbal, 1984, A Practical Guide to Molecular Cloning; Gene Transfer Vectors for Mammalian Cells, 1987 (J. H. Miller and M. P. Calos eds., Cold Spring Harbor Laboratory); Martin J. Bishop, ed., Guide to Human Genome Computing, 2d Edition, Academic Press, San Diego, Calif. (1998); and Leonard F. Peruski, Jr., and Anne Harwood Peruski, The Internet and the New Biology: Tools for Genomic and Molecular Research, American Society for Microbiology, Washington, D.C. (1997).
Any suitable materials and/or methods known to those of skill can be utilized in carrying out the present invention; however, preferred materials and/or methods are described. Materials, reagents and the like to which reference is made in the following description and examples are obtainable from commercial sources, unless otherwise noted.
S. epidermidis Genomic Sequence
This invention provides nucleotide sequences of the genome of S. epidermidis which thus comprises a DNA sequence library of S. epidermidis genomic DNA. The detailed description that follows provides nucleotide sequences of S. epidermidis, and also describes how the sequences were obtained and how ORFs and protein-coding sequences were identified. Also described are compositions and methods of using the disclosed S. epidermidis sequences in methods including diagnostic and therapeutic applications. Furthermore, the library can be used as a database for identification and comparison of medically important sequences in this and other strains of S. epidermidis. 
To determine the genomic sequence of S. epidermidis, DNA from strain 18972 of S. epidermidis was isolated and a library of DNA fragments were transformed into DH5α cells. DNA sequencing was achieved using established ABI sequencing methods on ABI377 automated DNA sequencers. The cloning and sequencing procedures are described in more detail in the Exemplification.
Individual sequence reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor-Grantee Workshop V, January 1996, p. 157). The average contig length was about 3–4 kb.
All subsequent steps were based on sequencing by ABI377 automated DNA sequencing methods. The cloning and sequencing procedures are described in more detail in the Exemplification.
A variety of approaches may be used to order the contigs so as to obtain a continuous sequence representing the entire S. epidermidis genome. Synthetic oligonucleotides are designed that are complementary to sequences at the end of each contig. These oligonucleotides may be hybridized to libaries of S. epidermidis genomic DNA in, for example, lambda phage vectors or plasmid vectors to identify clones that contain sequences corresponding to the junctional regions between individual contigs. Such clones are then used to isolate template DNA and the same oligonucleotides are used as primers in polymerase chain reaction (PCR) to amplify junctional fragments, the nucleotide sequence of which is then determined.
The S. epidermidis sequences were analyzed for the presence of open reading frames (ORFs) comprising at least 180 nucleotides. As a result of the analysis of ORFs based on stop-to-stop codon reads, it should be understood that these ORFs may not correspond to the ORF of a naturally-occurring S. epidermidis polypeptide. These ORFs may contain start codons which indicate the initiation of protein synthesis of a naturally-occurring S. epidermidis polypeptide. Such start codons within the ORFs provided herein were identified by those of ordinary skill in the relevant art, and the resulting ORF and the encoded S. epidermidis polypeptide is within the scope of this invention. For example, within the ORFs a codon such as AUG or GUG (encoding methionine or valine) which is part of the initiation signal for protein synthesis were identified and the portion of an ORF to corresponding to a naturally-occurring S. epidermidis polypeptide was recognized. The predicted coding regions were defined by evaluating the coding potential of such sequences with the program GENEMARKTM (Borodovsky and McIninch, 1993, Comp. 17:123).
Each predicted ORF amino acid sequence was compared with all sequences found in current GENBANK, SWISS-PROT, and PIR databases using the BLAST algorithm. BLAST identifies local alignments occurring by chance between the ORF sequence and the sequence in the databank (Altschal et al., 1990, L Mol. Biol. 215:403–410). Homologous ORFs (probabilities less than 10−5 by chance) and ORF's that are probably non-homologous (probabilities greater than 10−5 by chance) but have good codon usage were identified. Both homologous, sequences and non-homologous sequences with good codon usage, are likely to encode proteins and are encompassed by the invention.
S. epidermidis Plasmid Sequences
This invention also provides nucleotide sequences of two naturally occurs plasmids which thus comprises a DNA sequence library of S. epidermidis plasmid DNA. One plasmid disclosed is approximately 39 Kb and nucleic acid sequence is contained within SEQ ID NO: 3703–SEQ ID NO: 3764. The other plasmid is approximately 2.9 Kb contained within SEQ ID NO: 3765–SEQ ID NO: 3772. The detailed description that follows provides nucleotide sequences of S. epidermidis, and also describes how the sequences were obtained and how ORFs and protein-coding sequences were identified. Also described are compositions and methods of using the disclosed S. epidermidis sequences in methods including diagnostic and therapeutic applications. The plasmid sequences can also be used as vectors and gene expression. Furthermore, the plasmid library can be used as a database for identification and comparison of medically important sequences in this and other strains of S. epidermidis. 
Similar methods were used to determine to plasmid sequences of S. epidermidis as described above in determining the genomic sequence. A more detailed description of the methods are in the Exemplification.
S. epidermidis Nucleic Acids
The present invention provides a library of S. epidermidis-derived nucleic acid sequences. The libraries provide probes, primers, and markers which are used as markers in epidemiological studies. The present invention also provides a library of S. epidermidis-derived nucleic acid sequences which comprise or encode targets for therapeutic drugs.
The nucleic acids of this invention may be obtained directly from the DNA of the above referenced S. epidermidis strain by using the polymerase chain reaction (PCR). See “PCR, A Practical Approach” (McPherson, Quirke, and Taylor, eds., IRL Press, Oxford, UK, 1991) for details about the PCR. High fidelity PCR is used to ensure a faithful DNA copy prior to expression. In addition, the authenticity of amplified products is verified by conventional sequencing methods. Clones carrying the desired sequences described in this invention may also be obtained by screening the libraries by means of the PCR or by hybridization of synthetic oligonucleotide probes to filter lifts of the library colonies or plaques as known in the art (see, e.g., Sambrook et al., Molecular Cloning, A Laboratory Manual 2nd edition, 1989, Cold Spring Harbor Press, NY).
It is also possible to obtain nucleic acids encoding S. epidermidis polypeptides from a cDNA library in accordance with protocols herein described. A cDNA encoding an S. epidermidis polypeptide can be obtained by isolating total mRNA from an appropriate strain. Double stranded cDNAs can then be prepared from the total mRNA. Subsequently, the cDNAs can be inserted into a suitable plasmid or viral (e.g., bacteriophage) vector using any one of a number of known techniques. Genes encoding S. epidermidis polypeptides can also be cloned using established polymerase chain reaction techniques in accordance with the nucleotide sequence information provided by the invention. The nucleic acids of the invention can be DNA or RNA. Preferred nucleic acids of the invention are contained in the Sequence Listing.
The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known, including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).
In another example, DNA can be chemically synthesized using, e.g., the phosphoramidite solid support method of Matteucci et al., 1981, J. Am. Chem. Soc. 103:3185, the method of Yoo et al., 1989, J. Biol. Chem. 764:17078, or other well known methods. This can be done by sequentially linking a series of oligonucleotide cassettes comprising pairs of synthetic oligonucleotides, as described below.
Nucleic acids isolated or synthesized in accordance with features of the present invention are useful, by way of example, without limitation, as probes, primers, capture ligands, antisense genes and for developing expression systems for the synthesis of proteins and peptides corresponding to such sequences. As probes, primers, capture ligands and antisense agents, the nucleic acid normally consists of all or part (approximately twenty or more nucleotides for specificity as well as the ability to form stable hybridization products) of the nucleic acids of the invention contained in the Sequence Listing. These uses are described in further detail below.
Probes
A nucleic acid isolated or synthesized in accordance with the sequence of the invention contained in the Sequence Listing can be used as a probe to specifically detect S. epidermidis. With the sequence information set forth in the present application, sequences of twenty or more nucleotides are identified which provide the desired inclusivity and exclusivity with respect to S. epidermidis, and extraneous nucleic acids likely to be encountered during hybridization conditions. More preferably, the sequence will comprise at least about twenty to thirty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules.
Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques. Individuals skilled in the art will readily recognize that the nucleic acids, for use as probes, can be provided with a label to facilitate detection of a hybridization product.
Nucleic acid isolated and synthesized in accordance with the sequence of the invention contained in the Sequence Listing can also be useful as probes to detect homologous regions (especially homologous genes) of other Staphylococcus species using appropriate stringency hybridization conditions as described herein.
Capture Ligand
For use as a capture ligand, the nucleic acid selected in the manner described above with respect to probes, can be readily associated with a support. The manner in which nucleic acid is associated with supports is well known. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing have utility to separate S. epidermidis nucleic acid from one strain from the nucleic acid of other another strain as well as from other organisms. Nucleic acid having twenty or more nucleotides in a sequence of the invention contained in the Sequence Listing can also have utility to separate other Staphylococcus species from each other and from other organisms. Preferably, the sequence will comprise at least about twenty nucleotides to convey stability to the hybridization product formed between the probe and the intended target molecules. Sequences larger than 1000 nucleotides in length are difficult to synthesize but can be generated by recombinant DNA techniques.
Primers
Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility as primers for the amplification of S. epidermidis nucleic acid. These nucleic acids may also have utility as primers for the amplification of nucleic acids in other Staphylococcus species. With respect to polymerase chain reaction (PCR) techniques, nucleic acid sequences of ≧10–15 nucleotides of the invention contained in the Sequence Listing have utility in conjunction with suitable enzymes and reagents to create copies of S. epidermidis nucleic acid. More preferably, the sequence will comprise twenty or more nucleotides to convey stability to the hybridization product formed between the primer and the intended target molecules. Binding conditions of primers greater than 100 nucleotides are more difficult to control to obtain specificity. High fidelity PCR can be used to ensure a faithful DNA copy prior to expression. In addition, amplified products can be checked by conventional sequencing methods.
The copies can be used in diagnostic assays to detect specific sequences, including genes from S. epidermidis and/or other Staphylococcus species. The copies can also be incorporated into cloning and expression vectors to generate polypeptides corresponding to the nucleic acid synthesized by PCR, as is described in greater detail herein.
The nucleic acids of the present invention find use as templates for the recombinant production of S. epidermidis-derived peptides or polypeptides.
Antisense
Nucleic acid or nucleic acid-hybridizing derivatives isolated or synthesized in accordance with the sequences described herein have utility as antisense agents to prevent the expression of S. epidermidis genes. These sequences also have utility as antisense agents to prevent expression of genes of other Staphylococcus species.
In one embodiment, nucleic acid or derivatives corresponding to S. epidermidis nucleic acids is loaded into a suitable carrier such as a liposome or bacteriophage for introduction into bacterial cells. For example, a nucleic acid having twenty or more nucleotides is capable of binding to bacteria nucleic acid or bacteria messenger RNA. Preferably, the antisense nucleic acid is comprised of 20 or more nucleotides to provide necessary stability of a hybridization product of non-naturally occurring nucleic acid and bacterial nucleic acid and/or bacterial messenger RNA. Nucleic acid having a sequence greater than 1000 nucleotides in length is difficult to synthesize but can be generated by recombinant DNA techniques. Methods for loading antisense nucleic acid in liposomes is known in the art as exemplified by U.S. Pat. No. 4,241,046 issued Dec. 23, 1980 to Papahadjopoulos et al.
The present invention encompasses isolated polypeptides and nucleic acids derived from S. epidermidis that are useful as reagents for diagnosis of bacterial infection, components of effective anti-bacterial vaccines, and/or as targets for anti-bacterial drugs, including anti-S. epidermidis drugs.
Expression of S. epidermidis Nucleic Acids
Table 2, which is appended herewith and which forms part of the present specification, provides a list of open reading frames (ORFs) in both strands and a putative identification of the particular function of a polypeptide which is encoded by each ORF, based on the homology match (determined by the BLASTP2 algorithm) of the predicted polypeptide with known proteins encoded by ORFs in other organisms. An ORF is a region of nucleic acid which encodes a polypeptide. This region may represent a portion of a coding sequence or a total sequence and was determined from stop to stop codons. The first column contains a designation for the ORF (“ORF Name”). The second and third columns list the SEQ ID numbers for the nucleic acid (“NT ID”) and amino acid (“AA ID”) sequences corresponding to each ORF, respectively. The fourth and fifth columns list the length of the nucleic acid ORF (“NT LN”) and the length of the amino acid ORF (“AA LN”), respectively. The nucleotide sequence corresponding to each ORF begins at the first nucleotide immediately following a stop codon and ends at the nucleotide immediately preceding the next downstream stop codon in the same reading frame. It will be recognized by one skilled in the art that the natural translation initiation sites will correspond to ATG, GTG, or TTG codons located within the ORFs. The natural initiation sites depend not only on the sequence of a start codon but also on the context of the DNA sequence adjacent to the start codon. Usually, a recognizable ribosome binding site is found within 20 nucleotides upstream from the initiation codon. In some cases where genes are translationally coupled and coordinately expressed together in “operons”, ribosome binding sites are not present, but the initiation codon of a downstream gene may occur very close to, or overlap, the stop codon of the an upstream gene in the same operon. The correct start codons can be generally identified without undue experimentation because only a few codons need be tested. It is recognized that the translational machinery in bacteria initiates all polypeptide chains with the amino acid methionine, regardless of the sequence of the start codon. In some cases, polypeptides are post-translationally modified, resulting in an N-terminal amino acid other than methionine in vivo. The sixth and seventh columns provide metrics for assessing the likelihood of the homology match (determined by the BLASTP2 algorithm), as is known in the art, to the genes indicated in the description frame (“Desciption”) below the ORF Name. These genes in the Description were identified when the designated ORF was compared against a comprehensive non-redundant protein database. Specifically, the sixth column represents the Blast Score (“Score”) for the match (a higher score is a better match), and the seventh column represents the probability (“P-value”) for the match (the probability that such a match can have occurred by chance; the lower the value, the more likely the match is valid). If a BLASTP2 score of less than 100 was obtained, no value is reported in the table. The Description provides, where available, the Swissprot accession number (SP), the locus name (LN), the Organism (OR), Source of variant (SR), E.C. number (EC), the gene name (GN), the product name (PN), the Function Description (FN), Left End (LE), Right End (RE), Coding Direction (DI), and the description (DE) or notes (NT) for each ORF. This information allows one of ordinary skill in the art to determine a potential use for each identified coding sequence and, as a result, allows to use the polypeptides of the present invention for commercial and industrial purposes.
Using the information provided in SEQ ID NO: 1–SEQ ID NO: 3772, SEQ ID NO: 3773–SEQ ID NO: 7544 and in Table 2 together with routine cloning and sequencing methods, one of ordinary skill in the art will be able to clone and sequence all the nucleic acid fragments of interest including open reading frames (ORFs) encoding a large variety of proteins of S. epidermidis. 
Nucleic acid isolated or synthesized in accordance with the sequences described herein have utility to generate polypeptides. The nucleic acid of the invention exemplified in SEQ ID NO: 1–SEQ ID NO: 3772 and in Table 2 or fragments of said nucleic acid encoding active portions of S. epidermidis polypeptides can be cloned into suitable vectors or used to isolate nucleic acid. The isolated nucleic acid is combined with suitable DNA linkers and cloned into a suitable vector.
The function of a specific gene or operon can be ascertained by expression in a bacterial strain under conditions where the activity of the gene product(s) specified by the gene or operon in question can be specifically measured. Alternatively, a gene product may be produced in large quantities in an expressing strain for use as an antigen, an industrial reagent, for structural studies, etc. This expression can be accomplished in a mutant strain which lacks the activity of the gene to be tested, or in a strain that does not produce the same gene product(s). This includes, but is not limited to, Eucaryotic species such as the yeast Saccharomyces cerevisiae, Methanobacterium strains or other Archaea, and Eubacteria such as E. coli, B. Subtilis, S. Aureus, S. Pneumonia or Pseudomonas putida. In some cases the expression host will utilize the natural S. epidermidis promoter whereas in others, it will be necessary to drive the gene with a promoter sequence derived from the expressing organism (e.g., an E. coli beta-galactosidase promoter for expression in E. coli).
To express a gene product using the natural S. epidermidis promoter, a procedure such as the following can be used. A restriction fragment containing the gene of interest, together with its associated natural promoter element and regulatory sequences (identified using the DNA sequence data) is cloned into an appropriate recombinant plasmid containing an origin of replication that functions in the host organism and an appropriate selectable marker. This can be accomplished by a number of procedures known to those skilled in the art. It is most preferably done by cutting the plasmid and the fragment to be cloned with the same restriction enzyme to produce compatible ends that can be ligated to join the two pieces together. The recombinant plasmid is introduced into the host organism by, for example, electroporation and cells containing the recombinant plasmid are identified by selection for the marker on the plasmid. Expression of the desired gene product is detected using an assay specific for that gene product.
In the case of a gene that requires a different promoter, the body of the gene (coding sequence) is specifically excised and cloned into an appropriate expression plasmid. This subcloning can be done by several methods, but is most easily accomplished by PCR amplification of a specific fragment and ligation into an expression plasmid after treating the PCR product with a restriction enzyme or exonuclease to create suitable ends for cloning.
A suitable host cell for expression of a gene can be any procaryotic or eucaryotic cell. Suitable methods for transforming host cells can be found in Sambrook et al. (Molecular Cloning: A Laboratory Manual, 2nd Edition, Cold Spring Harbor Laboratory Press (1989)), and other laboratory textbooks.
For example, a host cell transfected with a nucleic acid vector directing expression of a nucleotide sequence encoding an S. epidermidis polypeptide can be cultured under appropriate conditions to allow expression of the polypeptide to occur. Suitable media for cell culture are well known in the art. Polypeptides of the invention can be isolated from cell culture medium, host cells, or both using techniques known in the art for purifying proteins including ion-exchange chromatography, gel filtration chromatography, ultrafiltration, electrophoresis, and immunoaffinity purification with antibodies specific for such polypeptides. Additionally, in many situations, polypeptides can be produced by chemical cleavage of a native protein (e.g., tryptic digestion) and the cleavage products can then be purified by standard techniques.
In the case of membrane bound proteins, these can be isolated from a host cell by contacting a membrane-associated protein fraction with a detergent forming a solubilized complex, where the membrane-associated protein is no longer entirely embedded in the membrane fraction and is solubilized at least to an extent which allows it to be chromatographically isolated from the membrane fraction. Chromatographic techniques which can be used in the final purification step are known in the art and include hydrophobic interaction, lectin affinity, ion exchange, dye affinity and immunoaffinity.
One strategy to maximize recombinant S. epidermidis peptide expression in E. coli is to express the protein in a host bacteria with an impaired capacity to proteolytically cleave the recombinant protein (Gottesman, S., Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990) 119–128). Another strategy would be to alter the nucleic acid encoding an S. epidermidis peptide to be inserted into an expression vector so that the individual codons for each amino acid would be those preferentially utilized in highly expressed E. coli proteins (Wada et al., (1992) Nuc. Acids Res. 20:2111–2118). Such alteration of nucleic acids of the invention can be carried out by standard DNA synthesis techniques.
The nucleic acids of the invention can also be chemically synthesized using standard techniques. Various methods of chemically synthesizing polydeoxynucleotides are known, including solid-phase synthesis which, like peptide synthesis, has been fully automated in commercially available DNA synthesizers (See, e.g., Itakura et al. U.S. Pat. No. 4,598,049; Caruthers et al. U.S. Pat. No. 4,458,066; and Itakura U.S. Pat. Nos. 4,401,796 and 4,373,071, incorporated by reference herein).
The present invention provides a library of S. epidermidis-derived nucleic acid sequences. The libraries provide probes, primers, and markers which can be used as markers in epidemiological studies. The present invention also provides a library of S. epidermidis-derived nucleic acid sequences which comprise or encode targets for therapeutic drugs.
Nucleic acids comprising any of the sequences disclosed herein or sub-sequences thereof can be prepared by standard methods using the nucleic acid sequence information provided in SEQ ID NO: 1–SEQ ID NO: 3772. For example, DNA can be chemically synthesized using, e.g., the phosphoramidite solid support method of Matteucci et al., 1981, J. Am. Chem. Soc. 103:3185, the method of Yoo et al., 1989, J. Biol. Chem. 764:17078, or other well known methods. This can be done by sequentially linking a series of oligonucleotide cassettes comprising pairs of synthetic oligonucleotides, as described below.
Of course, due to the degeneracy of the genetic code, many different nucleotide sequences can encode polypeptides having the amino acid sequences defined by SEQ ID NO: 3773–SEQ ID NO: 7544 or sub-sequences thereof. The codons can be selected for optimal expression in prokaryotic or eukaryotic systems. Such degenerate variants are also encompassed by this invention.
Insertion of nucleic acids (typically DNAs) encoding the polypeptides of the invention into a vector is easily accomplished when the termini of both the DNAs and the vector comprise compatible restriction sites. If this cannot be done, it may be necessary to modify the termini of the DNAs and/or vector by digesting back single-stranded DNA overhangs generated by restriction endonuclease cleavage to produce blunt ends, or to achieve the same result by filling in the single-stranded termini with an appropriate DNA polymerase.
Alternatively, any site desired may be produced, e.g., by ligating nucleotide sequences (linkers) onto the termini. Such linkers may comprise specific oligonucleotide sequences that define desired restriction sites. Restriction sites can also be generated by the use of the polymerase chain reaction (PCR). See, e.g., Saiki et al., 1988, Science 239:48. The cleaved vector and the DNA fragments may also be modified if required by homopolymeric tailing.
The nucleic acids of the invention may be isolated directly from cells. Alternatively, the polymerase chain reaction (PCR) method can be used to produce the nucleic acids of the invention, using either chemically synthesized strands or genomic material as templates. Primers used for PCR can be synthesized using the sequence information provided herein and can further be designed to introduce appropriate new restriction sites, if desirable, to facilitate incorporation into a given vector for recombinant expression.
The nucleic acids of the present invention may be flanked by natural S. epidermidis regulatory sequences, or may be associated with heterologous sequences, including promoters, enhancers, response elements, signal sequences, polyadenylation sequences, introns, 5′- and 3′-noncoding regions, and the like. The nucleic acids may also be modified by many means known in the art. Non-limiting examples of such modifications include methylation, “caps”, substitution of one or more of the naturally occurring nucleotides with an analog, internucleotide modifications such as, for example, those with uncharged linkages (e.g., methyl phosphonates, phosphotriesters, phosphoroamidates, carbamates, etc.) and with charged linkages (e.g., phosphorothioates, phosphorodithioates, etc.). Nucleic acids may contain one or more additional covalently linked moieties, such as, for example, proteins (e.g., nucleases, toxins, antibodies, signal peptides, poly-L-lysine, etc.), intercalators (e.g., acridine, psoralen, etc.), chelators (e.g., metals, radioactive metals, iron, oxidative metals, etc.), and alkylators. PNAs are also included. The nucleic acid may be derivatized by formation of a methyl or ethyl phosphotriester or an alkyl phosphoramidate linkage. Furthermore, the nucleic acid sequences of the present invention may also be modified with a label capable of providing a detectable signal, either directly or indirectly. Exemplary labels include radioisotopes, fluorescent molecules, biotin, and the like.
The invention also provides nucleic acid vectors comprising the disclosed S. epidermidis-derived sequences or derivatives or fragments thereof. A large number of vectors, including plasmid and bacterial vectors, have been described for replication and/or expression in a variety of eukaryotic and prokaryotic hosts, and may be used for cloning or protein expression.
The encoded S. epidermidis polypeptides may be expressed by using many known vectors, such as pUC plasmids, pET plasmids (Novagen, Inc., Madison, Wis.), or pRSET or pREP (Invitrogen, San Diego, Calif.), and many appropriate host cells, using methods disclosed or cited herein or otherwise known to those skilled in the relevant art. The particular choice of vector/host is not critical to the practice of the invention.
Recombinant cloning vectors will often include one or more replication systems for cloning or expression, one or more markers for selection in the host, e.g. antibiotic resistance, and one or more expression cassettes. The inserted S. epidermidis coding sequences may be synthesized by standard methods, isolated from natural sources, or prepared as hybrids, etc. Ligation of the S. epidermidis coding sequences to transcriptional regulatory elements and/or to other amino acid coding sequences may be achieved by known methods. Suitable host cells may be transformed/transfected/infected as appropriate by any suitable method including electroporation, CaCl2 mediated DNA uptake, bacterial infection, microinjection, microprojectile, or other established methods.
Appropriate host cells include bacteria, archebacteria, fungi, especially yeast, and plant and animal cells, especially mammalian cells. Of particular interest are S. epidermidis, E. coli, B. Subtilis, Saccharomyces cerevisiae, Saccharomyces carlsbergensis, Schizosaccharomyces pombi, SF9 cells, C129 cells, 293 cells, Neurospora, and CHO cells, COS cells, HeLa cells, and immortalized mammalian myeloid and lymphoid cell lines. Preferred replication systems include M13, ColE 1, SV40, baculovirus, lambda, adenovirus, and the like. A large number of transcription initiation and termination regulatory regions have been isolated and shown to be effective in the transcription and translation of heterologous proteins in the various hosts. Examples of these regions, methods of isolation, manner of manipulation, etc. are known in the art. Under appropriate expression conditions, host cells can be used as a source of recombinantly produced S. epidermidis-derived peptides and polypeptides.
Advantageously, vectors may also include a transcription regulatory element (i.e., a promoter) operably linked to the S. epidermidis portion. The promoter may optionally contain operator portions and/or ribosome binding sites. Non-limiting examples of bacterial promoters compatible with E. coli include: b-lactamase (penicillinase) promoter; lactose promoter; tryptophan (trp) promoter; araBAD (arabinose) operon promoter; lambda-derived P1 promoter and N gene ribosome binding site; and the hybrid tac promoter derived from sequences of the trp and lac UV5 promoters. Non-limiting examples of yeast promoters include 3-phosphoglycerate kinase promoter, glyceraldehyde-3-phosphate dehydrogenase (GAPDH) promoter, galactokinase (GAL 1) promoter, galactoepimerase promoter, and alcohol dehydrogenase (ADH) promoter. Suitable promoters for mammalian cells include without limitation viral promoters such as that from Simian Virus 40 (SV40), Rous sarcoma virus (RSV), adenovirus (ADV), and bovine papilloma virus (BPV). Mammalian cells may also require terminator sequences, polyA addition sequences and enhancer sequences to increase expression. Sequences which cause amplification of the gene may also be desirable. Furthermore, sequences that facilitate secretion of the recombinant product from cells, including, but not limited to, bacteria, yeast, and animal cells, such as secretory signal sequences and/or prohormone pro region sequences, may also be included. These sequences are well described in the art.
Nucleic acids encoding wild-type or variant S. epidermidis-derived polypeptides may also be introduced into cells by recombination events. For example, such a sequence can be introduced into a cell, and thereby effect homologous recombination at the site of an endogenous gene or a sequence with substantial identity to the gene. Other recombination- based methods such as nonhomologous recombinations or deletion of endogenous genes by homologous recombination may also be used.
The nucleic acids of the present invention find use as templates for the recombinant production of S. epidermidis-derived peptides or polypeptides.
Identification and Use of S. epidermidis Nucleic Acid Sequences
The disclosed S. epidermidis polypeptide and nucleic acid sequences, or other sequences that are contained within ORFs, including complete protein-coding sequences, of which any of the disclosed S. epidermidis-specific sequences forms a part, are useful as target components for diagnosis and/or treatment of S. epidermidis-caused infection.
It will be understood that the sequence of an entire protein-coding sequence of which each disclosed nucleic acid sequence forms a part can be isolated and identified based on each disclosed sequence. This can be achieved, for example, by using an isolated nucleic acid encoding the disclosed sequence, or fragments thereof, to prime a sequencing reaction with genomic S. epidermidis DNA as template; this is followed by sequencing the amplified product. The isolated nucleic acid encoding the disclosed sequence, or fragments thereof, can also be hybridized to S. epidermidis genomic libraries to identify clones containing additional complete segments of the protein-coding sequence of which the shorter sequence forms a part. Then, the entire protein-coding sequence, or fragments thereof, or nucleic acids encoding all or part of the sequence, or sequence-conservative or function-conservative variants thereof, may be employed in practicing the present invention.
Preferred sequences are those that are useful in diagnostic and/or therapeutic applications. Diagnostic applications include without limitation nucleic-acid-based and antibody-based methods for detecting bacterial infection. Therapeutic applications include without limitation vaccines, passive immunotherapy, and drug treatments directed against gene products that are both unique to bacteria and essential for growth and/or replication of bacteria.
Identification of Nucleic Acids Encoding Vaccine Components and Targets for Agents Effective Against S. epidermidis 
The disclosed S. epidermidis genome sequence includes segments that direct the synthesis of ribonucleic acids and polypeptides, as well as origins of replication, promoters, other types of regulatory sequences, and intergenic nucleic acids. The invention encompasses nucleic acids encoding immunogenic components of vaccines and targets for agents effective against S. epidermidis. Identification of said immunogenic components involved in the determination of the function of the disclosed sequences, which can be achieved using a variety of approaches. Non-limiting examples of these approaches are described briefly below.
Homology to Known Sequences:
Computer-assisted comparison of the disclosed S. epidermidis sequences with previously reported sequences present in publicly available databases is useful for identifying functional S. epidermidis nucleic acid and polypeptide sequences. It will be understood that protein-coding sequences, for example, may be compared as a whole, and that a high degree of sequence homology between two proteins (such as, for example, >80–90%) at the amino acid level indicates that the two proteins also possess some degree of functional homology, such as, for example, among enzymes involved in metabolism, DNA synthesis, or cell wall synthesis, and proteins involved in transport, cell division, etc. In addition, many structural features of particular protein classes have been identified and correlate with specific consensus sequences, such as, for example, binding domains for nucleotides, DNA, metal ions, and other small molecules; sites for covalent modifications such as phosphorylation, acylation, and the like; sites of protein:protein interactions, etc. These consensus sequences may be quite short and thus may represent only a fraction of the entire protein-coding sequence. Identification of such a feature in an S. epidermidis sequence is therefore useful in determining the function of the encoded protein and identifying useful targets of antibacterial drugs.
Of particular relevance to the present invention are structural features that are common to secretory, transmembrane, and surface proteins, including secretion signal peptides and hydrophobic transmembrane domains. S. epidermidis proteins identified as containing putative signal sequences and/or transmembrane domains are useful as immunogenic components of vaccines.
Targets for therapeutic drugs according to the invention include, but are not limited to, polypeptides of the invention, whether unique to S. epidermidis or not, that are essential for growth and/or viability of S. epidermidis under at least one growth condition. Polypeptides essential for growth and/or viability can be determined by examining the effect of deleting and/or disrupting the genes, i.e., by so-called gene “knockout”. Alternatively, genetic footprinting can be used (Smith et al., 1995, Proc. Natl. Acad. Sci. USA 92:5479–6433; Published International Application WO 94/26933; U.S. Pat. No. 5,612,180). Still other methods for assessing essentiality includes the ability to isolate conditional lethal mutations in the specific gene (e.g., temperature sensitive mutations). Other useful targets for therapeutic drugs, which include polypeptides that are not essential for growth or viability per se but lead to loss of viability of the cell, can be used to target therapeutic agents to cells.
Strain-Specific Sequences:
Because of the evolutionary relationship between different S. epidermidis strains, it is believed that the presently disclosed S. epidermidis sequences are useful for identifying, and/or discriminating between, previously known and new S. epidermidis strains. It is believed that other S. epidermidis strains will exhibit at least about 70% sequence homology with the presently disclosed sequence. Systematic and routine analyses of DNA sequences derived from samples containing S. epidermidis strains, and comparison with the present sequence allows for the identification of sequences that can be used to discriminate between strains, as well as those that are common to all S. epidermidis strains. In one embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that discriminate between different strains of S. epidermidis. Strain-specific components can also be identified functionally by their ability to elicit or react with antibodies that selectively recognize one or more S. epidermidis strains.
In another embodiment, the invention provides nucleic acids, including probes, and peptide and polypeptide sequences that are common to all S. epidermidis strains but are not found in other bacterial species.
S. epidermidis Polypeptides
This invention encompasses isolated S. epidermidis polypeptides encoded by the disclosed S. epidermidis genomic sequences, including the polypeptides of the invention contained in the Sequence Listing. Polypeptides of the invention are preferably at least about amino acid residues in length. Using the DNA sequence information provided herein, the amino acid sequences of the polypeptides encompassed by the invention can be deduced using methods well-known in the art. It will be understood that the sequence of an entire nucleic acid encoding an S. epidermidis polypeptide can be isolated and identified based on an ORF that encodes only a fragment of the cognate protein-coding region. This can be achieved, for example, by using the isolated nucleic acid encoding the ORF, or fragments thereof, to prime a polymerase chain reaction with genomic S. epidermidis DNA as template; this is followed by sequencing the amplified product.
The polypeptides of the present invention, including function-conservative variants of the disclosed ORFs, may be isolated from wild-type or mutant S. epidermidis cells, or from heterologous organisms or cells (including, but not limited to, bacteria, fungi, insect, plant, and mammalian cells) including S. epidermidis into which an S. epidermidis-derived protein-coding sequence has been introduced and expressed. Furthermore, the polypeptides may be part of recombinant fusion proteins.
S. epidermidis polypeptides of the invention can be chemically synthesized using commercially automated procedures such as those referenced herein, including, without limitation, exclusive solid phase synthesis, partial solid phase methods, fragment condensation or classical solution synthesis. The polypeptides are preferably prepared by solid phase peptide synthesis as described by Merrifield, 1963, J. Am. Chem. Soc. 85:2149. The synthesis is carried out with amino acids that are protected at the alpha-amino terminus. Trifunctional amino acids with labile side-chains are also protected with suitable groups to prevent undesired chemical reactions from occurring during the assembly of the polypeptides. The alpha-amino protecting group is selectively removed to allow subsequent reaction to take place at the amino-terminus. The conditions for the removal of the alpha-amino protecting group do not remove the side-chain protecting groups.
Methods for polypeptide purification are well-known in the art, including, without limitation, preparative disc-gel electrophoresis, isoelectric focusing, HPLC, reversed-phase HPLC, gel filtration, ion exchange and partition chromatography, and countercurrent distribution. For some purposes, it is preferable to produce the polypeptide in a recombinant system in which the S. epidermidis protein contains an additional sequence tag that facilitates purification, such as, but not limited to, a polyhistidine sequence. The polypeptide can then be purified from a crude lysate of the host cell by chromatography on an appropriate solid- phase matrix. Alternatively, antibodies produced against an S. epidermidis protein or against peptides derived therefrom can be used as purification reagents. Other purification methods are possible.
The present invention also encompasses derivatives and homologues of S. epidermidis-encoded polypeptides. For some purposes, nucleic acid sequences encoding the peptides may be altered by substitutions, additions, or deletions that provide for functionally equivalent molecules, i.e., function-conservative variants. For example, one or more amino acid residues within the sequence can be substituted by another amino acid of similar properties, such as, for example, positively charged amino acids (arginine, lysine, and histidine); negatively charged amino acids (aspartate and glutamate); polar neutral amino acids; and non-polar amino acids.
The isolated polypeptides may be modified by, for example, phosphorylation, sulfation, acylation, or other protein modifications. They may also be modified with a label capable of providing a detectable signal, either directly or indirectly, including, but not limited to, radioisotopes and fluorescent compounds.
To identify S. epidermidis-derived polypeptides for use in the present invention, essentially the complete genomic sequence of a virulent, methicillin-resistant isolate of Staphylococcus mirabilis isolate was analyzed. While, in very rare instances, a nucleic acid sequencing error may be revealed, resolving a rare sequencing error is well within the art, and such an occurrence will not prevent one skilled in the art from practicing the invention.
Also encompassed are any S. epidermidis polypeptide sequences that are contained within the open reading frames (ORFs), including complete protein-coding sequences, of which any of SEQ ID NO: 1–SEQ ID NO: 3772 forms a part. Table 2, which is appended herewith and which forms part of the present specification, provides a putative identification of the particular function of a polypeptide which is encoded by each ORF, based on the homology match (determined by the BLAST algorithm) of the predicted polypeptide with known proteins encoded by ORFs in other organisms. As a result, one skilled in the art can use the polypeptides of the present invention for commercial and industrial purposes consistent with the type of putative identification of the polypeptide.
The present invention provides a library of S. epidermidis-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise sequences that are contemplated for use as components of vaccines. Non-limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended herewith and which forms part of the present specification.
The present invention also provides a library of S. epidermidis-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise sequences lacking homology to any known prokaryotic or eukaryotic sequences. Such libraries provide probes, primers, and markers which can be used to diagnose S. epidermidis infection, including use as markers in epidemiological studies. Non- limiting examples of such sequences are listed by SEQ ID NO in Table 2, which is appended hereto and part hereof.
The present invention also provides a library of S. epidermidis-derived polypeptide sequences, and a corresponding library of nucleic acid sequences encoding the polypeptides, wherein the polypeptides themselves, or polypeptides contained within ORFs of which they form a part, comprise targets for therapeutic drugs.
SPECIFIC EXAMPLE
Determination Of Staphylococcus Protein Antigens for Antibody and Vaccine Development
The selection of Staphylococcus protein antigens for vaccine development can be derived from the nucleic acids encoding S. epidermidis polypeptides. First, the ORF's can be analyzed for homology to other known exported or membrane proteins and analyzed using the discriminant analysis described by Klein, et al. (Klein, P., Kanehsia, M., and DeLisi, C. (1985) Biochimica et Biophysica Acta 815, 468–476) for predicting exported and membrane proteins.
Homology searches can be performed using the BLAST algorithm contained in the Wisconsin Sequence Analysis Package (Genetics Computer Group, University Research Park, 575 Science Drive, Madison, Wis. 53711) to compare each predicted ORF amino acid sequence with all sequences found in the current GenBank, SWISS-PROT and PIR databases. BLAST searches for local alignments between the ORF and the databank sequences and reports a probability score which indicates the probability of finding this sequence by chance in the database. ORF's with significant homology (e.g. probabilities lower than 1×10−1 that the homology is only due to random chance) to membrane or exported proteins represent protein antigens for vaccine development. Possible functions can be provided to S. epidermidis genes based on sequence homology to genes cloned in other organisms.
Discriminant analysis (Klein, et al. supra) can be used to examine the ORF amino acid sequences. This algorithm uses the intrinsic information contained in the ORF amino acid sequence and compares it to information derived from the properties of known membrane and exported proteins. This comparison predicts which proteins will be exported, membrane associated or cytoplasmic. ORF amino acid sequences identified as exported or membrane associated by this algorithm are likely protein antigens for vaccine development.
Production of Fragments and Analogs of S. epidermidis Nucleic Acids and Polypeptides
Based on the discovery of the S. epidermidis gene products of the invention provided in the Sequence Listing, one skilled in the art can alter the disclosed structure of S. epidermidis genes, e.g., by producing fragments or analogs, and test the newly produced structures for activity. Examples of techniques known to those skilled in the relevant art which allow the production and testing of fragments and analogs are discussed below. These, or analogous methods can be used to make and screen libraries of polypeptides, e.g., libraries of random peptides or libraries of fragments or analogs of cellular proteins for the ability to bind S. epidermidis polypeptides. Such screens are useful for the identification of inhibitors of S. epidermidis. 
Generation of Fragments
Fragments of a protein can be produced in several ways, e.g., recombinantly, by proteolytic digestion, or by chemical synthesis. Internal or terminal fragments of a polypeptide can be generated by removing one or more nucleotides from one end (for a terminal fragment) or both ends (for an internal fragment) of a nucleic acid which encodes the polypeptide. Expression of the mutagenized DNA produces polypeptide fragments. Digestion with “end-nibbling” endonucleases can thus generate DNAs which encode an array of fragments. DNAs which encode fragments of a protein can also be generated by random shearing, restriction digestion or a combination of the above-discussed methods.
Fragments can also be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f-Moc or t-Boc chemistry. For example, peptides of the present invention may be arbitrarily divided into fragments of desired length with no overlap of the fragments, or divided into overlapping fragments of a desired length.
Alteration of Nucleic Acids and Polypeptides: Random Methods
Amino acid sequence variants of a protein can be prepared by random mutagenesis of DNA which encodes a protein or a particular domain or region of a protein. Useful methods include PCR mutagenesis and saturation mutagenesis. A library of random amino acid sequence variants can also be generated by the synthesis of a set of degenerate oligonucleotide sequences. (Methods for screening proteins in a library of variants are elsewhere herein).
PCR Mutagenesis
In PCR mutagenesis, reduced Taq polymerase fidelity is used to introduce random mutations into a cloned fragment of DNA (Leung et al., 1989, Technique 1:11–15). The DNA region to be mutagenized is amplified using the polymerase chain reaction (PCR) under conditions that reduce the fidelity of DNA synthesis by Taq DNA polymerase, e.g., by using a dGTP/dATP ratio of five and adding Mn2+ to the PCR reaction. The pool of amplified DNA fragments are inserted into appropriate cloning vectors to provide random mutant libraries.
Saturation Mutagenesis
Saturation mutagenesis allows for the rapid introduction of a large number of single base substitutions into cloned DNA fragments (Mayers et al., 1985, Science 229:242). This technique includes generation of mutations, e.g., by chemical treatment or irradiation of single-stranded DNA in vitro, and synthesis of a complimentary DNA strand. The mutation frequency can be modulated by modulating the severity of the treatment, and essentially all possible base substitutions can be obtained. Because this procedure does not involve a genetic selection for mutant fragments both neutral substitutions, as well as those that alter function, are obtained. The distribution of point mutations is not biased toward conserved sequence elements.
Degenerate Oligonucleotides
A library of homologs can also be generated from a set of degenerate oligonucleotide sequences. Chemical synthesis of a degenerate sequences can be carried out in an automatic DNA synthesizer, and the synthetic genes then ligated into an appropriate expression vector. The synthesis of degenerate oligonucleotides is known in the art (see for example, Narang, S A (1983) Tetrahedron 39:3; Itakura et al. (1981) Recombinant DNA, Proc 3rd Cleveland Sympos. Macromolecules, ed. AG Walton, Amsterdam: Elsevier pp273–289; Itakura et al. (1984) Annu. Rev. Biochem. 53:323; Itakura et al. (1984) Science 198:1056; Ike et al. (1983) Nucleic Acid Res. 11:477. Such techniques have been employed in the directed evolution of other proteins (see, for example, Scott et al. (1990) Science 249:386–390; Roberts et al. (1992) PNAS 89:2429–2433; Devlin et al. (1990) Science 249: 404–406; Cwirla et al. (1990) PNAS 87: 6378–6382; as well as U.S. Pat. Nos. 5,223,409, 5,198,346, and 5,096,815).
Alteration of Nucleic Acids and Polypeptides: Methods for Directed Mutagenesis
Non-random or directed, mutagenesis techniques can be used to provide specific sequences or mutations in specific regions. These techniques can be used to create variants which include, e.g., deletions, insertions, or substitutions, of residues of the known amino acid sequence of a protein. The sites for mutation can be modified individually or in series, e.g., by (1) substituting first with conserved amino acids and then with more radical choices depending upon results achieved, (2) deleting the target residue, or (3) inserting residues of the same or a different class adjacent to the located site, or combinations of options 1–3.
Alanine Scanning Mutagenesis
Alanine scanning mutagenesis is a useful method for identification of certain residues or regions of the desired protein that are preferred locations or domains for mutagenesis, Cunningham and Wells (Science 244:1081–1085, 1989). In alanine scanning, a residue or group of target residues are identified (e.g., charged residues such as Arg, Asp, His, Lys, and Glu) and replaced by a neutral or negatively charged amino acid (most preferably alanine or polyalanine). Replacement of an amino acid can affect the interaction of the amino acids with the surrounding aqueous environment in or outside the cell. Those domains demonstrating functional sensitivity to the substitutions are then refined by introducing further or other variants at or for the sites of substitution. Thus, while the site for introducing an amino acid sequence variation is predetermined, the nature of the mutation per se need not be predetermined. For example, to optimize the performance of a mutation at a given site, alanine scanning or random mutagenesis may be conducted at the target codon or region and the expressed desired protein subunit variants are screened for the optimal combination of desired activity.
Oligonucleotide-Mediated Mutagenesis
Oligonucleotide-mediated mutagenesis is a useful method for preparing substitution, deletion, and insertion variants of DNA, see, e.g., Adelman et al., (DNA 2:183, 1983). Briefly, the desired DNA is altered by hybridizing an oligonucleotide encoding a mutation to a DNA template, where the template is the single-stranded form of a plasmid or bacteriophage containing the unaltered or native DNA sequence of the desired protein. After hybridization, a DNA polymerase is used to synthesize an entire second complementary strand of the template that will thus incorporate the oligonucleotide primer, and will code for the selected alteration in the desired protein DNA. Generally, oligonucleotides of at least about 25 nucleotides in length are used. An optimal oligonucleotide will have 12 to 15 nucleotides that are completely complementary to the template on either side of the nucleotide(s) coding for the mutation. This ensures that the oligonucleotide will hybridize properly to the single- stranded DNA template molecule. The oligonucleotides are readily synthesized using techniques known in the art such as that described by Crea et al. (Proc. Natl. Acad. Sci. USA, 75: 5765[1978]).
Cassette Mutagenesis
Another method for preparing variants, cassette mutagenesis, is based on the technique described by Wells et al. (Gene, 34:315[1985]). The starting material is a plasmid (or other vector) which includes the protein subunit DNA to be mutated. The codon(s) in the protein subunit DNA to be mutated are identified. There must be a unique restriction endonuclease site on each side of the identified mutation site(s). If no such restriction sites exist, they may be generated using the above-described oligonucleotide-mediated mutagenesis method to introduce them at appropriate locations in the desired protein subunit DNA. After the restriction sites have been introduced into the plasmid, the plasmid is cut at these sites to linearize it. A double-stranded oligonucleotide encoding the sequence of the DNA between the restriction sites but containing the desired mutation(s) is synthesized using standard procedures. The two strands are synthesized separately and then hybridized together using standard techniques. This double-stranded oligonucleotide is referred to as the cassette. This cassette is designed to have 3′ and 5′ ends that are comparable with the ends of the linearized plasmid, such that it can be directly ligated to the plasmid. This plasmid now contains the mutated desired protein subunit DNA sequence.
Combinatorial Mutagenesis
Combinatorial mutagenesis can also be used to generate mutants (Ladner et al., WO 88/06630). In this method, the amino acid sequences for a group of homologs or other related proteins are aligned, preferably to promote the highest homology possible. All of the amino acids which appear at a given position of the aligned sequences can be selected to create a degenerate set of combinatorial sequences. The variegated library of variants is generated by combinatorial mutagenesis at the nucleic acid level, and is encoded by a variegated gene library. For example, a mixture of synthetic oligonucleotides can be enzymatically ligated into gene sequences such that the degenerate set of potential sequences are expressible as individual peptides, or alternatively, as a set of larger fusion proteins containing the set of degenerate sequences.
Other Modifications of S. epidermidis Nucleic Acids and Polypeptides
It is possible to modify the structure of an S. epidermidis polypeptide for such purposes as increasing solubility, enhancing stability (e.g., shelf life ex vivo and resistance to proteolytic degradation in vivo). A modified S. epidermidis protein or peptide can be produced in which the amino acid sequence has been altered, such as by amino acid substitution, deletion, or addition as described herein.
An S. epidermidis peptide can also be modified by substitution of cysteine residues preferably with alanine, serine, threonine, leucine or glutamic acid residues to minimize dimerization via disulfide linkages. In addition, amino acid side chains of fragments of the protein of the invention can be chemically modified. Another modification is cyclization of the peptide.
In order to enhance stability and/or reactivity, an S. epidermidis polypeptide can be modified to incorporate one or more polymorphisms in the amino acid sequence of the protein resulting from any natural allelic variation. Additionally, D-amino acids, non-natural amino acids, or non-amino acid analogs can be substituted or added to produce a modified protein within the scope of this invention. Furthermore, an S. epidermidis polypeptide can be modified using polyethylene glycol (PEG) according to the method of A. Sehon and co- workers (Wie et al., supra) to produce a protein conjugated with PEG. In addition, PEG can be added during chemical synthesis of the protein. Other modifications of S. epidermidis proteins include reduction/alkylation (Tarr, Methods of Protein Microcharacterization, J. E. Silver ed., Humana Press, Clifton N.J. 155–194 (1986)); acylation (Tarr, supra); chemical coupling to an appropriate carrier (Mishell and Shiigi, eds, Selected Methods in Cellular Immunology, WH Freeman, San Francisco, Calif. (1980), U.S. Pat. No. 4,939,239; or mild formalin treatment (Marsh, (1971) Int. Arch. of Allergy and Appl. Immunol., 41: 199–215).
To facilitate purification and potentially increase solubility of an S. epidermidis protein or peptide, it is possible to add an amino acid fusion moiety to the peptide backbone. For example, hexa-histidine can be added to the protein for purification by immobilized metal ion affinity chromatography (Hochuli, E. et al., (1988) Bio/Technology, 6: 1321–1325). In addition, to facilitate isolation of peptides free of irrelevant sequences, specific endoprotease cleavage sites can be introduced between the sequences of the fusion moiety and the peptide.
To potentially aid proper antigen processing of epitopes within an S. epidermidis polypeptide, canonical protease sensitive sites can be engineered between regions, each comprising at least one epitope via recombinant or synthetic methods. For example, charged amino acid pairs, such as KK or RR, can be introduced between regions within a protein or fragment during recombinant construction thereof. The resulting peptide can be rendered sensitive to cleavage by cathepsin and/or other trypsin-like enzymes which would generate portions of the protein containing one or more epitopes. In addition, such charged amino acid residues can result in an increase in the solubility of the peptide.
Primary Methods for Screening Polypeptides and Analogs
Various techniques are known in the art for screening generated mutant gene products. Techniques for screening large gene libraries often include cloning the gene library into replicable expression vectors, transforming appropriate cells with the resulting library of vectors, and expressing the genes under conditions in which detection of a desired activity, e.g., in this case, binding to S. epidermidis polypeptide or an interacting protein, facilitates relatively easy isolation of the vector encoding the gene whose product was detected. Each of the techniques described below is amenable to high through-put analysis for screening large numbers of sequences created, e.g., by random mutagenesis techniques.
Two Hybrid Systems
Two hybrid assays such as the system described below (as with the other screening methods described herein), can be used to identify polypeptides, e.g., fragments or analogs of a naturally-occurring S. epidermidis polypeptide, e.g., of cellular proteins, or of randomly generated polypeptides which bind to an S. epidermidis protein. (The S. epidermidis domain is used as the bait protein and the library of variants are expressed as prey fusion proteins.) In an analogous fashion, a two hybrid assay (as with the other screening methods described herein), can be used to find polypeptides which bind an S. epidermidis polypeptide.
Display Libraries
In one approach to screening assays, the Staphylococcus peptides are displayed on the surface of a cell or viral particle, and the ability of particular cells or viral particles to bind an appropriate receptor protein via the displayed product is detected in a “panning assay”. For example, the gene library can be cloned into the gene for a surface membrane protein of a bacterial cell, and the resulting fusion protein detected by panning (Ladner et al., WO 88/06630; Fuchs et al. (1991) Bio/Technology 9:1370–1371; and Goward et al. (1992) TIBS 18:136–140). In a similar fashion, a detectably labeled ligand can be used to score for potentially functional peptide homologs. Fluorescently labeled ligands, e.g., receptors, can be used to detect homologs which retain ligand-binding activity. The use of fluorescently labeled ligands, allows cells to be visually inspected and separated under a fluorescence microscope, or, where the morphology of the cell permits, to be separated by a fluorescence- activated cell sorter.
A gene library can be expressed as a fusion protein on the surface of a viral particle. For instance, in the filamentous phage system, foreign peptide sequences can be expressed on the surface of infectious phage, thereby conferring two significant benefits. First, since these phage can be applied to affinity matrices at concentrations well over 1013 phage per milliliter, a large number of phage can be screened at one time. Second, since each infectious phage displays a gene product on its surface, if a particular phage is recovered from an affinity matrix in low yield, the phage can be amplified by another round of infection. The group of almost identical E. coli filamentous phages, M13, fd., and f1, are most often used in phage display libraries. Either of the phage gIII or gVIII coat proteins can be used to generate fusion proteins without disrupting the ultimate packaging of the viral particle. Foreign epitopes can be expressed at the NH2-terminal end of pill and phage bearing such epitopes recovered from a large excess of phage lacking this epitope (Ladner et al. PCT publication WO 90/02909; Garrard et al., PCT publication WO 92/09690; Marks et al. (1992) J. Biol. Chem. 267:16007–16010; Griffiths et al. (1993) EMBO J. 12:725–734; Clackson et al. (1991) Nature 352:624–628; and Barbas et al. (1992) PNAS 89:4457–4461).
A common approach uses the maltose receptor of E. coli (the outer membrane protein, LamB) as a peptide fusion partner (Charbit et al. (1986) EMBO 5, 3029–3037). Oligonucleotides have been inserted into plasmids encoding the LamB gene to produce peptides fused into one of the extracellular loops of the protein. These peptides are available for binding to ligands, e.g., to antibodies, and can elicit an immune response when the cells are administered to animals. Other cell surface proteins, e.g., OmpA (Schorr et al. (1991) Vaccines 91, pp. 387–392), PhoE (Agterberg, et al. (1990) Gene 88, 37–45), and PAL (Fuchs et al. (1991) Bio/Tech 9, 1369–1372), as well as large bacterial surface structures have served as vehicles for peptide display. Peptides can be fused to pilin, a protein which polymerizes to form the pilus-a conduit for interbacterial exchange of genetic information (Thiry et al. (1989) Appl. Environ. Microbiol. 55, 984–993). Because of its role in interacting with other cells, the pilus provides a useful support for the presentation of peptides to the extracellular environment. Another large surface structure used for peptide display is the bacterial motive organ, the flagellum. Fusion of peptides to the subunit protein flagellin offers a dense array of many peptide copies on the host cells (Kuwajima et al. (1988) Bio/Tech. 6, 1080–1083). Surface proteins of other bacterial species have also served as peptide fusion partners. Examples include the Staphylococcus protein A and the outer membrane IgA protease of Neisseria (Hansson et al. (1992) J. Bacteriol. 174, 4239–4245 and Klauser et al. (1990) EMBO J. 9, 1991–1999).
In the filamentous phage systems and the LamB system described above, the physical link between the peptide and its encoding DNA occurs by the containment of the DNA within a particle (cell or phage) that carries the peptide on its surface. Capturing the peptide captures the particle and the DNA within. An alternative scheme uses the DNA-binding protein LacI to form a link between peptide and DNA (Cull et al. (1992) PNAS USA 89:1865–1869). This system uses a plasmid containing the LacI gene with an oligonucleotide cloning site at its 3′-end. Under the controlled induction by arabinose, a LacI-peptide fusion protein is produced. This fusion retains the natural ability of LacI to bind to a short DNA sequence known as LacO operator (LacO). By installing two copies of LacO on the expression plasmid, the LacI- peptide fusion binds tightly to the plasmid that encoded it. Because the plasmids in each cell contain only a single oligonucleotide sequence and each cell expresses only a single peptide sequence, the peptides become specifically and stablely associated with the DNA sequence that directed its synthesis. The cells of the library are gently lysed and the peptide-DNA complexes are exposed to a matrix of immobilized receptor to recover the complexes containing active peptides. The associated plasmid DNA is then reintroduced into cells for amplification and DNA sequencing to determine the identity of the peptide ligands. As a demonstration of the practical utility of the method, a large random library of dodecapeptides was made and selected on a monoclonal antibody raised against the opioid peptide dynorphin B. A cohort of peptides was recovered, all related by a consensus sequence corresponding to a six-residue portion of dynorphin B. (Cull et al. (1992) Proc. Natl. Acad. Sci. U.S.A. 89–1869).
This scheme, sometimes referred to as peptides-on-plasmids, differs in two important ways from the phage display methods. First, the peptides are attached to the C-terminus of the fusion protein, resulting in the display of the library members as peptides having free carboxy termini. Both of the filamentous phage coat proteins, pIII and pVIII, are anchored to the phage through their C-termini, and the guest peptides are placed into the outward- extending N-terminal domains. In some designs, the phage-displayed peptides are presented right at the amino terminus of the fusion protein. (Cwirla, et al. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 6378–6382) A second difference is the set of biological biases affecting the population of peptides actually present in the libraries. The LacI fusion molecules are confined to the cytoplasm of the host cells. The phage coat fusions are exposed briefly to the cytoplasm during translation but are rapidly secreted through the inner membrane into the periplasmic compartment, remaining anchored in the membrane by their C-terminal hydrophobic domains, with the N-termini, containing the peptides, protruding into the periplasm while awaiting assembly into phage particles. The peptides in the LacI and phage libraries may differ significantly as a result of their exposure to different proteolytic activities. The phage coat proteins require transport across the inner membrane and signal peptidase processing as a prelude to incorporation into phage. Certain peptides exert a deleterious effect on these processes and are underrepresented in the libraries (Gallop et al. (1994) J. Med. Chem. 37(9):1233–1251). These particular biases are not a factor in the LacI display system.
The number of small peptides available in recombinant random libraries is enormous. Libraries of 107–109 independent clones are routinely prepared. Libraries as large as 1011 recombinants have been created, but this size approaches the practical limit for clone libraries. This limitation in library size occurs at the step of transforming the DNA containing randomized segments into the host bacterial cells. To circumvent this limitation, an in vitro system based on the display of nascent peptides in polysome complexes has recently been developed. This display library method has the potential of producing libraries 3–6 orders of magnitude larger than the currently available phage/phagemid or plasmid libraries. Furthermore, the construction of the libraries, expression of the peptides, and screening, is done in an entirely cell-free format.
In one application of this method (Gallop et al. (1994) J. Med. Chem. 37(9):1233–1251), a molecular DNA library encoding 1012 decapeptides was constructed and the library expressed in an E. coli S30 in vitro coupled transcription/translation system. Conditions were chosen to stall the ribosomes on the mRNA, causing the accumulation of a substantial proportion of the RNA in polysomes and yielding complexes containing nascent peptides still linked to their encoding RNA. The polysomes are sufficiently robust to be affinity purified on immobilized receptors in much the same way as the more conventional recombinant peptide display libraries are screened. RNA from the bound complexes is recovered, converted to cDNA, and amplified by PCR to produce a template for the next round of synthesis and screening. The polysome display method can be coupled to the phage display system. Following several rounds of screening, cDNA from the enriched pool of polysomes was cloned into a phagemid vector. This vector serves as both a peptide expression vector, displaying peptides fused to the coat proteins, and as a DNA sequencing vector for peptide identification. By expressing the polysome-derived peptides on phage, one can either continue the affinity selection procedure in this format or assay the peptides on individual clones for binding activity in a phage ELISA, or for binding specificity in a completion phage ELISA (Barret, et al. (1992) Anal. Biochem 204,357–364). To identify the sequences of the active peptides one sequences the DNA produced by the phagemid host.
Secondary Screening of Polypeptides and Analogs
The high through-put assays described above can be followed by secondary screens in order to identify further biological activities which will, e.g., allow one skilled in the art to differentiate agonists from antagonists. The type of a secondary screen used will depend on the desired activity that needs to be tested. For example, an assay can be developed in which the ability to inhibit an interaction between a protein of interest and its respective ligand can be used to identify antagonists from a group of peptide fragments isolated though one of the primary screens described above.
Therefore, methods for generating fragments and analogs and testing them for activity are known in the art. Once the core sequence of interest is identified, it is routine for one skilled in the art to obtain analogs and fragments.
Peptide Mimetics of S. epidermidis Polypeptides
The invention also provides for reduction of the protein binding domains of the subject S. epidermidis polypeptides to generate mimetics, e.g. peptide or non-peptide agents. The peptide mimetics are able to disrupt binding of a polypeptide to its counter ligand, e.g., in the case of an S. epidermidis polypeptide binding to a naturally occurring ligand. The critical residues of a subject S. epidermidis polypeptide which are involved in molecular recognition of a polypeptide can be determined and used to generate S. epidermidis-derived peptidomimetics which competitively or noncompetitively inhibit binding of the S. epidermidis polypeptide with an interacting polypeptide (see, for example, European patent applications EP-412,762A and EP-B31,080A).
For example, scanning mutagenesis can be used to map the amino acid residues of a particular S. epidermidis polypeptide involved in binding an interacting polypeptide, peptidomimetic compounds (e.g. diazepine or isoquinoline derivatives) can be generated which mimic those residues in binding to an interacting polypeptide, and which therefore can inhibit binding of an S. epidermidis polypeptide to an interacting polypeptide and thereby interfere with the function of S. epidermidis polypeptide. For instance, non-hydrolyzable peptide analogs of such residues can be generated using benzodiazepine (e.g., see Freidinger et al. in Peptides: Chemistry and Biology, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), azepine (e.g., see Huffman et al. in Peptides: Chemistry and Biology, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), substituted gama lactam rings (Garvey et al. in Peptides: Chemistry and Biology, G. R. Marshall ed., ESCOM Publisher: Leiden, Netherlands, 1988), keto-methylene pseudopeptides (Ewenson et al. (1986) J Med Chem 29:295; and Ewenson et al. in Peptides: Structure and Function (Proceedings of the 9th American Peptide Symposium) Pierce Chemical Co. Rockland, Ill., 1985), b-turn dipeptide cores (Nagai et al. (1985) Tetrahedron Lett 26:647; and Sato et al. (1986) J Chem Soc Perkin Trans 1:1231), and b-aminoalcohols (Gordon et al. (1985) Biochem Biophys Res Commun 126:419; and et al. (1986)Biochem Biophys Res Commun 134:71).
Vaccine Formulations for S. epidermidis Nucleic Acids and Polypeptides
This invention also features vaccine compositions for protection against infection by S. epidermidis or for treatment of S. epidermidis infection. In one embodiment, the vaccine compositions contain one or more immunogenic components such as a surface protein from S. epidermidis, or portion thereof, and a pharmaceutically acceptable carrier. Nucleic acids within the scope of the invention are exemplified by the nucleic acids of the invention contained in the Sequence Listing which encode S. epidermidis surface proteins. Any nucleic acid encoding an immunogenic S. epidermidis protein, or portion thereof, which is capable of expression in a cell, can be used in the present invention. These vaccines have therapeutic and prophylactic utilities.
One aspect of the invention provides a vaccine composition for protection against infection by S. epidermidis which contains at least one immunogenic fragment of an S. epidermidis protein and a pharmaceutically acceptable carrier. Preferred fragments include peptides of at least about 10 amino acid residues in length, preferably about 10–20 amino acid residues in length, and more preferably about 12–16 amino acid residues in length.
Immunogenic components of the invention can be obtained, for example, by screening polypeptides recombinantly produced from the corresponding fragment of the nucleic acid encoding the full-length S. epidermidis protein. In addition, fragments can be chemically synthesized using techniques known in the art such as conventional Merrifield solid phase f- Moc or t-Boc chemistry.
In one embodiment, immunogenic components are identified by the ability of the peptide to stimulate T cells. Peptides which stimulate T cells, as determined by, for example, T cell proliferation or cytokine secretion are defined herein as comprising at least one T cell epitope. T cell epitopes are believed to be involved in initiation and perpetuation of the immune response to the protein allergen which is responsible for the clinical symptoms of allergy. These T cell epitopes are thought to trigger early events at the level of the T helper cell by binding to an appropriate HLA molecule on the surface of an antigen presenting cell, thereby stimulating the T cell subpopulation with the relevant T cell receptor for the epitope. These events lead to T cell proliferation, lymphokine secretion, local inflammatory reactions, recruitment of additional immune cells to the site of antigen/T cell interaction, and activation of the B cell cascade, leading to the production of antibodies. A T cell epitope is the basic element, or smallest unit of recognition by a T cell receptor, where the epitope comprises amino acids essential to receptor recognition (e.g., approximately 6 or 7 amino acid residues). Amino acid sequences which mimic those of the T cell epitopes are within the scope of this invention.
Screening immunogenic components can be accomplished using one or more of several different assays. For example, in vitro, peptide T cell stimulatory activity is assayed by contacting a peptide known or suspected of being immunogenic with an antigen presenting cell which presents appropriate MHC molecules in a T cell culture. Presentation of an immunogenic S. epidermidis peptide in association with appropriate MHC molecules to T cells in conjunction with the necessary co-stimulation has the effect of transmitting a signal to the T cell that induces the production of increased levels of cytokines, particularly of interleukin-2 and interleukin-4. The culture supernatant can be obtained and assayed for interleukin-2 or other known cytokines. For example, any one of several conventional assays for interleukin-2 can be employed, such as the assay described in Proc. Natl. Acad. Sci USA, 86: 1333 (1989) the pertinent portions of which are incorporated herein by reference. A kit for an assay for the production of interferon is also available from Genzyme Corporation (Cambridge, Mass.).
Alternatively, a common assay for T cell proliferation entails measuring tritiated thymidine incorporation. The proliferation of T cells can be measured in vitro by determining the amount of 3H-labeled thymidine incorporated into the replicating DNA of cultured cells. Therefore, the rate of DNA synthesis and, in turn, the rate of cell division can be quantified.
Vaccine compositions of the invention containing immunogenic components (e.g., S. epidermidis polypeptide or fragment thereof or nucleic acid encoding an S. epidermidis polypeptide or fragment thereof) preferably include a pharmaceutically acceptable carrier. The term “pharmaceutically acceptable carrier” refers to a carrier that does not cause an allergic reaction or other untoward effect in patients to whom it is administered. Suitable pharmaceutically acceptable carriers include, for example, one or more of water, saline, phosphate buffered saline, dextrose, glycerol, ethanol and the like, as well as combinations thereof. Pharmaceutically acceptable carriers may further comprise minor amounts of auxiliary substances such as wetting or emulsifying agents, preservatives or buffers, which enhance the shelf life or effectiveness of the antibody. For vaccines of the invention containing S. epidermidis polypeptides, the polypeptide is co-administered with a suitable adjuvant.
It will be apparent to those of skill in the art that the therapeutically effective amount of DNA or protein of this invention will depend, inter alia, upon the administration schedule, the unit dose of antibody administered, whether the protein or DNA is administered in combination with other therapeutic agents, the immune status and health of the patient, and the therapeutic activity of the particular protein or DNA.
Vaccine compositions are conventionally administered parenterally, e.g., by injection, either subcutaneously or intramuscularly. Methods for intramuscular immunization are described by Wolff et al. (1990) Science 247: 1465–1468 and by Sedegah et al. (1994) Immunology 91: 9866–9870. Other modes of administration include oral and pulmonary formulations, suppositories, and transdermal applications. Oral immunization is preferred over parenteral methods for inducing protection against infection by S. epidermidis. Cain et. al. (1993) Vaccine 11: 637–642. Oral formulations include such normally employed excipients as, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, magnesium carbonate, and the like.
The vaccine compositions of the invention can include an adjuvant, including, but not limited to aluminum hydroxide; N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP); N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637, referred to as nor-MDP); N- acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-sn-glycero-3-hydroxyphos-phoryloxy)-ethylamine (CGP 19835A, referred to a MTP-PE); RIBI, which contains three components from bacteria; monophosphoryl lipid A; trehalose dimycoloate; cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/Tween 80 emulsion; and cholera toxin. Others which may be used are non-toxic derivatives of cholera toxin, including its B subunit, and/or conjugates or genetically engineered fusions of the S. epidermidis polypeptide with cholera toxin or its B subunit, procholeragenoid, fungal polysaccharides, including schizophyllan, muramyl dipeptide, muramyl dipeptide derivatives, phorbol esters, labile toxin of E. coli, non-S. epidermidis bacterial lysates, block polymers or saponins.
Other suitable delivery methods include biodegradable microcapsules or immuno- stimulating complexes (ISCOMs), cochleates, or liposomes, genetically engineered attenuated live vectors such as viruses or bacteria, and recombinant (chimeric) virus-like particles, e.g., bluetongue. The amount of adjuvant employed will depend on the type of adjuvant used. For example, when the mucosal adjuvant is cholera toxin, it is suitably used in an amount of 5 mg to 50 mg, for example 10 mg to 35 mg. When used in the form of microcapsules, the amount used will depend on the amount employed in the matrix of the microcapsule to achieve the desired dosage. The determination of this amount is within the skill of a person of ordinary skill in the art.
Carrier systems in humans may include enteric release capsules protecting the antigen from the acidic environment of the stomach, and including S. epidermidis polypeptide in an insoluble form as fusion proteins. Suitable carriers for the vaccines of the invention are enteric coated capsules and polylactide-glycolide microspheres. Suitable diluents are 0.2 N NaHCO3 and/or saline.
Vaccines of the invention can be administered as a primary prophylactic agent in adults or in children, as a secondary prevention, after successful eradication of S. epidermidis in an infected host, or as a therapeutic agent in the aim to induce an immune response in a susceptible host to prevent infection by S. epidermidis. The vaccines of the invention are administered in amounts readily determined by persons of ordinary skill in the art. Thus, for adults a suitable dosage will be in the range of 10 mg to 10 g, preferably 10 mg to 100 mg. A suitable dosage for adults will also be in the range of 5 mg to 500 mg. Similar dosage ranges will be applicable for children. Those skilled in the art will recognize that the optimal dose may be more or less depending upon the patient's body weight, disease, the route of administration, and other factors. Those skilled in the art will also recognize that appropriate dosage levels can be obtained based on results with known oral vaccines such as, for example, a vaccine based on an E. coli lysate (6 mg dose daily up to total of 540 mg) and with an enterotoxigenic E. coli purified antigen (4 doses of 1 mg) (Schulman et al., J. Urol. 150:917–921 (1993); Boedecker et al., American Gastroenterological Assoc. 999:A-222 (1993)). The number of doses will depend upon the disease, the formulation, and efficacy data from clinical trials. Without intending any limitation as to the course of treatment, the treatment can be administered over 3 to 8 doses for a primary immunization schedule over 1 month (Boedeker, American Gastroenterological Assoc. 888:A-222 (1993)).
In a preferred embodiment, a vaccine composition of the invention can be based on a killed whole E. coli preparation with an immunogenic fragment of an S. epidermidis protein of the invention expressed on its surface or it can be based on an E. coli lysate, wherein the killed E. coli acts as a carrier or an adjuvant.
It will be apparent to those skilled in the art that some of the vaccine compositions of the invention are useful only for preventing S. epidermidis infection, some are useful only for treating S. epidermidis infection, and some are useful for both preventing and treating S. epidermidis infection. In a preferred embodiment, the vaccine composition of the invention provides protection against S. epidermidis infection by stimulating humoral and/or cell- mediated immunity against S. epidermidis. It should be understood that amelioration of any of the symptoms of S. epidermidis infection is a desirable clinical goal, including a lessening of the dosage of medication used to treat S. epidermidis-caused disease, or an increase in the production of antibodies in the serum or mucous of patients.
Antibodies Reactive With S. epidermidis Polypeptides
The invention also includes antibodies specifically reactive with the subject S. epidermidis polypeptide. Anti-protein/anti-peptide antisera or monoclonal antibodies can be made by standard protocols (See, for example, Antibodies: A Laboratory Manual ed. by Harlow and Lane (Cold Spring Harbor Press: 1988)). A mammal such as a mouse, a hamster or rabbit can be immunized with an immunogenic form of the peptide. Techniques for conferring immunogenicity on a protein or peptide include conjugation to carriers or other techniques well known in the art. An immunogenic portion of the subject S. epidermidis polypeptide can be administered in the presence of adjuvant. The progress of immunization can be monitored by detection of antibody titers in plasma or serum. Standard ELISA or other immunoassays can be used with the immunogen as antigen to assess the levels of antibodies.
In a preferred embodiment, the subject antibodies are immunospecific for antigenic determinants of the S. epidermidis polypeptides of the invention, e.g. antigenic determinants of a polypeptide of the invention contained in the Sequence Listing, or a closely related human or non-human mammalian homolog (e.g., 90% homologous, more preferably at least about 95% homologous). In yet a further preferred embodiment of the invention, the anti-S. epidermidis antibodies do not substantially cross react (i.e., react specifically) with a protein which is for example, less than 80% percent homologous to a sequence of the invention contained in the Sequence Listing. By “not substantially cross react”, it is meant that the antibody has a binding affinity for a non-homologous protein which is less than 10 percent, more preferably less than 5 percent, and even more preferably less than 1 percent, of the binding affinity for a protein of the invention contained in the Sequence Listing. In a most preferred embodiment, there is no cross-reactivity between bacterial and mammalian antigens.
The term antibody as used herein is intended to include fragments thereof which are also specifically reactive with S. epidermidis polypeptides. Antibodies can be fragmented using conventional techniques and the fragments screened for utility in the same manner as described above for whole antibodies. For example, F(ab′)2 fragments can be generated by treating antibody with pepsin. The resulting F(ab′)2 fragment can be treated to reduce disulfide bridges to produce Fab′ fragments. The antibody of the invention is further intended to include bispecific and chimeric molecules having an anti-S. epidermidis portion.
Both monoclonal and polyclonal antibodies (Ab) directed against S. epidermidis polypeptides or S. epidermidis polypeptide variants, and antibody fragments such as Fab′ and F(ab′)2, can be used to block the action of S. epidermidis polypeptide and allow the study of the role of a particular S. epidermidis polypeptide of the invention in aberrant or unwanted intracellular signaling, as well as the normal cellular function of the S. epidermidis and by microinjection of anti-S. epidermidis polypeptide antibodies of the present invention.
Antibodies which specifically bind S. epidermidis epitopes can also be used in immunohistochemical staining of tissue samples in order to evaluate the abundance and pattern of expression of S. epidermidis antigens. Anti-S. epidermidis polypeptide antibodies can be used diagnostically in immuno-precipitation and immuno-blotting to detect and evaluate S. epidermidis levels in tissue or bodily fluid as part of a clinical testing procedure. Likewise, the ability to monitor S. epidermidis polypeptide levels in an individual can allow determination of the efficacy of a given treatment regimen for an individual afflicted with such a disorder. The level of an S. epidermidis polypeptide can be measured in cells found in bodily fluid, such as in urine samples or can be measured in tissue, such as produced by gastric biopsy. Diagnostic assays using anti-S. epidermidis antibodies can include, for example, immunoassays designed to aid in early diagnosis of S. epidermidis infections. The present invention can also be used as a method of detecting antibodies contained in samples from individuals infected by this bacterium using specific S. epidermidis antigens.
Another application of anti-S. epidermidis polypeptide antibodies of the invention is in the immunological screening of cDNA libraries constructed in expression vectors such as λgt11, λgt11–23, λZAP, and λORF8. Messenger libraries of this type, having coding sequences inserted in the correct reading frame and orientation, can produce fusion proteins. For instance, λgt11 will produce fusion proteins whose amino termini consist of β-galactosidase amino acid sequences and whose carboxy termini consist of a foreign polypeptide. Antigenic epitopes of a subject S. epidermidis polypeptide can then be detected with antibodies, as, for example, reacting nitrocellulose filters lifted from infected plates with anti-S. epidermidis polypeptide antibodies. Phage, scored by this assay, can then be isolated from the infected plate. Thus, the presence of S. epidermidis gene homologs can be detected and cloned from other species, and alternate isoforms (including splicing variants) can be detected and cloned.
Kits Containing Nucleic Acids, Polypeptides or Antibodies of the Invention
The nucleic acid, polypeptides and antibodies of the invention can be combined with other reagents and articles to form kits. Kits for diagnostic purposes typically comprise the nucleic acid, polypeptides or antibodies in vials or other suitable vessels. Kits typically comprise other reagents for performing hybridization reactions, polymerase chain reactions (PCR), or for reconstitution of lyophilized components, such as aqueous media, salts, buffers, and the like. Kits may also comprise reagents for sample processing such as detergents, chaotropic salts and the like. Kits may also comprise immobilization means such as particles, supports, wells, dipsticks and the like. Kits may also comprise labeling means such as dyes, developing reagents, radioisotopes, fluorescent agents, luminescent or chemiluminescent agents, enzymes, intercalating agents and the like. With the nucleic acid and amino acid sequence information provided herein, individuals skilled in art can readily assemble kits to serve their particular purpose. Kits further can include instructions for use.
Bio Chip Technology
The nucleic acid sequence of the present invention may be used to detect S. epidermidis or other species of Staphylococcus acid sequence using bio chip technology. Bio chips containing arrays of nucleic acid sequence can also be used to measure expression of genes of S. epidermidis or other species of Staphylococcus. For example, to diagnose a patient with a S. epidermidis or other Staphylococcus infection, a sample from a human or animal can be used as a probe on a bio chip containing an array of nucleic acid sequence from the present invention. In addition, a sample from a disease state can be compared to a sample from a non-disease state which would help identify a gene that is up-regulated or expressed in the disease state. This would provide valuable insight as to the mechanism by which the disease manifests. Changes in gene expression can also be used to identify critical pathways involved in drug transport or metabolism, and may enable the identification of novel targets involved in virulence or host cell interactions involved in maintenance of an infection. Procedures using such techniques have been described by Brown et al., 1995, Science 270: 467–470.
Bio chips can also be used to monitor the genetic changes of potential therapeutic compounds including, deletions, insertions or mismatches. Once the therapeutic is added to the patient, changes to the genetic sequence can be evaluated for its efficacy. In addition, the nucleic acid sequence of the present invention can be used to determine essential genes in cell cycling. As described in Iyer et al., 1999 (Science, 283:83–87) genes essential in the cell cycle can be identified using bio chips. Furthermore, the present invention provides nucleic acid sequence which can be used with bio chip technology to understand regulatory networks in bacteria, measure the response to environmental signals or drugs as in drug screening, and study virulence induction. (Mons et al., 1998, Nature Biotechnology, 16: 45–48. Patents teaching this technology include U.S. Pat. Nos. 5,445,934, 5,744,305, and 5800992.
Drug Screening Assays Using S. epidermidis Polypeptides
By making available purified and recombinant S. epidermidis polypeptides, the present invention provides assays which can be used to screen for drugs which are either agonists or antagonists of the normal cellular function, in this case, of the subject S. epidermidis polypeptides, or of their role in intracellular signaling. Such inhibitors or potentiators may be useful as new therapeutic agents to combat S. epidermidis infections in humans. A variety of assay formats will suffice and, in light of the present inventions, will be comprehended by the person skilled in the art.
In many drug screening programs which test libraries of compounds and natural extracts, high throughput assays are desirable in order to maximize the number of compounds surveyed in a given period of time. Assays which are performed in cell-free systems, such as may be derived with purified or semi-purified proteins, are often preferred as “primary” screens in that they can be generated to permit rapid development and relatively easy detection of an alteration in a molecular target which is mediated by a test compound. Moreover, the effects of cellular toxicity and/or bioavailability of the test compound can be generally ignored in the in vitro system, the assay instead being focused primarily on the effect of the drug on the molecular target as may be manifest in an alteration of binding affinity with other proteins or change in enzymatic properties of the molecular target. Accordingly, in an exemplary screening assay of the present invention, the compound of interest is contacted with an isolated and purified S. epidermidis polypeptide.
Screening assays can be constructed in vitro with a purified S. epidermidis polypeptide or fragment thereof, such as an S. epidermidis polypeptide having enzymatic activity, such that the activity of the polypeptide produces a detectable reaction product. The efficacy of the compound can be assessed by generating dose response curves from data obtained using various concentrations of the test compound. Moreover, a control assay can also be performed to provide a baseline for comparison. Suitable products include those with distinctive absorption, fluorescence, or chemi-luminescence properties, for example, because detection may be easily automated. A variety of synthetic or naturally occurring compounds can be tested in the assay to identify those which inhibit or potentiate the activity of the S. epidermidis polypeptide. Some of these active compounds may directly, or with chemical alterations to promote membrane permeability or solubility, also inhibit or potentiate the same activity (e.g., enzymatic activity) in whole, live S. epidermidis cells.
Overexpression Assays
Overexpression assays are based on the premise that overproduction of a protein would lead to a higher level of resistance to compounds that selectively interfere with the function of that protein. Overexpression assays may be used to identify compounds that interfere with the function of virtually any type of protein, including without limitation enzymes, receptors, DNA- or RNA-binding proteins, or any proteins that are directly or indirectly involved in regulating cell growth.
Typically, two bacterial strains are constructed. One contains a single copy of the gene of interest, and a second contains several copies of the same gene. Identification of useful inhibitory compounds of this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of the two strains. The method involves constructing a nucleic acid vector that directs high level expression of a particular target nucleic acid. The vectors are then transformed into host cells in single or multiple copies to produce strains that express low to moderate and high levels of protein encoding by the target sequence (strain A and B, respectively). Nucleic acid comprising sequences encoding the target gene can, of course, be directly integrated into the host cell.
Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on the growth of the two strains. Agents which interfere with an unrelated target equally inhibit the growth of both strains. Agents which interfere with the function of the target at high concentration should inhibit the growth of both strains. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit the growth of strain A at a concentration of the compound that allows strain B to grow.
Alternatively, a bacterial strain is constructed that contains the gene of interest under the control of an inducible promoter. Identification of useful inhibitory agents using this type of assay is based on a comparison of the activity of a test compound in inhibiting growth and/or viability of this strain under both inducing and non-inducing conditions. The method involves constructing a nucleic acid vector that directs high-level expression of a particular target nucleic acid. The vector is then transformed into host cells that are grown under both non-inducing and inducing conditions (conditions A and B, respectively).
Large numbers of compounds (or crude substances which may contain active compounds) are screened for their effect on growth under these two conditions. Agents that interfere with the function of the target should inhibit growth under both conditions. It should be possible, however, to titrate out the inhibitory effect of the compound in the overexpressing strain. That is, if the compound is affecting the particular target that is being tested, it should be possible to inhibit growth under condition A at a concentration that allows the strain to grow under condition B.
Ligand-Binding Assays
Many of the targets according to the invention have functions that have not yet been identified. Ligand-binding assays are useful to identify inhibitor compounds that interfere with the function of a particular target, even when that function is unknown. These assays are designed to detect binding of test compounds to particular targets. The detection may involve direct measurement of binding. Alternatively, indirect indications of binding may involve stabilization of protein structure or disruption of a biological function. Non-limiting examples of useful ligand-binding assays are detailed below.
A useful method for the detection and isolation of binding proteins is the Biomolecular Interaction Assay (BIAcore) system developed by Pharmacia Biosensor and described in the manufacturer's protocol (LKB Pharmacia, Sweden). The BIAcore system uses an affinity purified anti-GST antibody to immobilize GST-fusion proteins onto a sensor chip. The sensor utilizes surface plasmon resonance which is an optical phenomenon that detects changes in refractive indices. In accordance with the practice of the invention, a protein of interest is coated onto a chip and test compounds are passed over the chip. Binding is detected by a change in the refractive index (surface plasmon resonance).
A different type of ligand-binding assay involves scintillation proximity assays (SPA, described in U.S. Pat. No. 4,568,649).
Another type of ligand binding assay, also undergoing development, is based on the fact that proteins containing mitochondrial targeting signals are imported into isolated mitochondria in vitro (Hurt et al., 1985, Embo J. 4:2061–2068; Eilers and Schatz, Nature, 1986, 322:228–231). In a mitochondrial import assay, expression vectors are constructed in which nucleic acids encoding particular target proteins are inserted downstream of sequences encoding mitochondrial import signals. The chimeric proteins are synthesized and tested for their ability to be imported into isolated mitochondria in the absence and presence of test compounds. A test compound that binds to the target protein should inhibit its uptake into isolated mitochondria in vitro.
Another ligand-binding assay is the yeast two-hybrid system (Fields and Song, 1989, Nature 340:245–246). The yeast two-hybrid system takes advantage of the properties of the GAL4 protein of the yeast Saccharomyces cerevisiae. The GAL4 protein is a transcriptional activator required for the expression of genes encoding enzymes of galactose utilization. This protein consists of two separable and functionally essential domains: an N-terminal domain which binds to specific DNA sequences (UASG); and a C-terminal domain containing acidic regions, which is necessary to activate transcription. The native GAL4 protein, containing both domains, is a potent activator of transcription when yeast are grown on galactose media. The N-terminal domain binds to DNA in a sequence-specific manner but is unable to activate transcription. The C-terminal domain contains the activating regions but cannot activate transcription because it fails to be localized to UASG. In the two-hybrid system, a system of two hybrid proteins containing parts of GAL4: (1) a GAL4 DNA-binding domain fused to a protein ‘X’ and (2) a GAL4 activation region fused to a protein ‘Y’. If X and Y can form a protein—protein complex and reconstitute proximity of the GAL4 domains, transcription of a gene regulated by UASG occurs. Creation of two hybrid proteins, each containing one of the interacting proteins X and Y, allows the activation region of UASG to be brought to its normal site of action.
The binding assay described in Fodor et al., 1991, Science 251:767–773, which involves testing the binding affinity of test compounds for a plurality of defined polymers synthesized on a solid substrate, may also be useful.
Compounds which bind to the polypeptides of the invention are potentially useful as antibacterial agents for use in therapeutic compositions.
Pharmaceutical formulations suitable for antibacterial therapy comprise the antibacterial agent in conjunction with one or more biologically acceptable carriers. Suitable biologically acceptable carriers include, but are not limited to, phosphate-buffered saline, saline, deionized water, or the like. Preferred biologically acceptable carriers are physiologically or pharmaceutically acceptable carriers.
The antibacterial compositions include an antibacterial effective amount of active agent. Antibacterial effective amounts are those quantities of the antibacterial agents of the present invention that afford prophylactic protection against bacterial infections or which result in amelioration or cure of an existing bacterial infection. This antibacterial effective amount will depend upon the agent, the location and nature of the infection, and the particular host. The amount can be determined by experimentation known in the art, such as by establishing a matrix of dosages and frequencies and comparing a group of experimental units or subjects to each point in the matrix.
The antibacterial active agents or compositions can be formed into dosage unit forms, such as for example, creams, ointments, lotions, powders, liquids, tablets, capsules, suppositories, sprays, aerosols or the like. If the antibacterial composition is formulated into a dosage unit form, the dosage unit form may contain an antibacterial effective amount of active agent. Alternatively, the dosage unit form may include less than such an amount if multiple dosage unit forms or multiple dosages are to be used to administer a total dosage of the active agent. Dosage unit forms can include, in addition, one or more excipient(s), diluent(s), disintegrant(s), lubricant(s), plasticizer(s), colorant(s), dosage vehicle(s), absorption enhancer(s), stabilizer(s), bactericide(s), or the like.
For general information concerning formulations, see, e.g., Gilman et al. (eds.), 1990, Goodman and Gilman's: The Pharmacological Basis of Therapeutics, 8th ed., Pergamon Press; and Remington's Pharmaceutical Sciences, 17th ed., 1990, Mack Publishing Co., Easton, Pa.; Avis et al. (eds.), 1993, Pharmaceutical Dosage Forms: Parenteral Medications, Dekker, New York; Lieberman et al (eds.), 1990, Pharmaceutical Dosage Forms: Disperse Systems, Dekker, New York.
The antibacterial agents and compositions of the present invention are useful for preventing or treating S. epidermidis infections. Infection prevention methods incorporate a prophylactically effective amount of an antibacterial agent or composition. A prophylactically effective amount is an amount effective to prevent S. epidermidis infection and will depend upon the specific bacterial strain, the agent, and the host. These amounts can be determined experimentally by methods known in the art and as described above.
S. epidermidis infection treatment methods incorporate a therapeutically effective amount of an antibacterial agent or composition. A therapeutically effective amount is an amount sufficient to ameliorate or eliminate the infection. The prophylactically and/or therapeutically effective amounts can be administered in one administration or over repeated administrations. Therapeutic administration can be followed by prophylactic administration, once the initial bacterial infection has been resolved.
The antibacterial agents and compositions can be administered topically or systemically. Topical application is typically achieved by administration of creams, ointments, lotions, or sprays as described above. Systemic administration includes both oral and parental routes. Parental routes include, without limitation, subcutaneous, intramuscular, intraperitoneal, intravenous, transdermal, inhalation and intranasal administration.
Exemplification
Cloning and Sequencing S. epidermidis Genomic Sequence
This invention provides nucleotide sequences of the genome of S. epidermidis which thus comprises a DNA sequence library of S. epidermidis genomic DNA. The invention also provides nucleotide sequences of two naturally occurring plasmids in S. epidermidis. The detailed description that follows provides nucleotide sequences of S. epidermidis, and also describes how the sequences were obtained and how ORFs (Open Reading Frames) and protein-coding sequences can be identified. Also described are methods of using the disclosed S. epidermidis sequences in methods including diagnostic and therapeutic applications. Furthermore, the library can be used as a database for identification and comparison of medically important sequences in this and other strains of S. epidermidis as well as other species of Staphylococcus. 
Chromosomal DNA from strain 18972 of S. epidermidis, was isolated using a protocol described by Storrs, et al. (J. Bacteriol. 173: 4347–4352 (1991). The only exception to this protocol was that lysostaphin (120 U/ml) was used instead of lysozyme. Two endogenous plasmids of approximately 39 Kb and 2.9 Kb in size were identified upon visualization of the S. epidermidis genomic DNA on a 0.5% agarose gel. The first library constructed contained fragments from the S. epidermidis genome as well as from the endogenous plasmid. A second library was later constructed with genomic DNA, from which the plasmid DNA was removed by CsCl centrifugation. The genomic DNA prep involved a lysozyme:lysostaphin digestion, sodium dodecyl sulfate lysis, Proteinase K and RNase treatment, phenol:chloroform extraction, and sodium acetate precipitation, followed by the CsCl gradient to remove the plasmid.
In the construction of both libraries, genomic S. epidermidis DNA was hydrodynamically sheared in an HPLC and then separated on a standard 1% agarose gel. A fraction corresponding to 2000–3000 bp in length was excised from the gel and purifed by the GeneClean procedure (Biol101, Inc.).
The purified DNA fragments were then blunt-ended using T4 DNA polymerase. The healed DNA was then ligated to unique BstXI-linker adapters (5′-GTCTTCACCACGGGG-3′ and 5′-GTGGTGAAGAC-3′ in 100–1000 fold molar excess). These linkers are complimentary to the BstXI-cut pGTC vector, while the overhang is not self-complimentary. Therefore, the linkers will not concatermerize nor will the cut-vector religate itself easily. The linker-adapted inserts were separated from the unincorporated linkers on a 1% agarose gel and purified using GeneClean. The linker-adapted inserts were then ligated to BstXI-cut vector to construct a “shotgun” sublclone libraries.
Only major modifications to the protocols are highlighted. Briefly, the library was then transformed into DH5ácompetent cells (Gibco/BRL, DH5α transformation protocol). It was assessed by plating onto antibiotic plates containing ampicillin and IPTG/Xgal. The plates were incubated overnight at 37° C. Transformants were then used for plating of clones and picking for sequencing. The cultures were grown overnight at 37° C. DNA was purified using a silica bead DNA preparation (Engelstein, 1996) method. In this manner, 25 μg of DNA was obtained per clone.
These purified DNA samples were then sequenced using primarily ABI dye-terminator chemistry. All subsequent steps were based on sequencing by ABI377 automated DNA sequencing methods. The ABI dye terminator sequence reads were run on ABI377 machines and the data was transferred to UNIX machines following lane tracking of the gels. Base calls and quality scores were determined using the program PHRED (Ewing et al., 1998, Genome Res. 8: 175–185; Ewing and Green, 1998, Genome Res. 8: 685–734). Reads were assembled using PHRAP (P. Green, Abstracts of DOE Human Genome Program Contractor- Grantee Workshop V, January 1996, p. 157) with default program parameters and quality scores.
Finishing followed the initial assembly. Missing mates (sequences from clones that only gave reads from one end of the Staphylococcus DNA inserted in the plasmid) were identified and sequenced with ABI technology to allow the identification of additional overlapping contigs.
End-sequencing of randomly picked genomic lambda was also performed. Sequencing of both sides was done for all lambda sequences. The lambda library backbone helped to verify the integrity of the assembly and allowed closure of some of the physical gaps. Primers for walking off the ends of contigs would be selected using pick_primer (a GTC program) near the ends of the clones to facilitate gap closure. These walks can be sequenced using the selected clones and primers. These data are then reassembled with PHRAP. Additional sequencing using PCR-generated templates and screened and/or unscreened lambda templates can be done in addition.
Additional templates for the physical gaps were obtained through PCR using primers designed from the ends of the contigs. These templates were then used in sequencing reactions to close the gaps. Contigs were ordered by aligning identified S. epidermidis genes to the published physical maps. Order was confirmed by PCR. The final chromosomal assembly included 23 ordered contigs and the two plasmids each contained 1 contig each.
To identify S. epidermidis polypeptides the complete genomic sequence of S. epidermidis were analyzed essentially as follows: First, all possible stop-to-stop open reading frames (ORFs) greater than 180 nucleotides in all six reading frames were translated into amino acid sequences. Second, the identified ORFs were analyzed for homology to known (archeabacter, prokaryotic and eukaryotic) protein sequences. Third, the coding potential of non-homologous sequences were evaluated with the program GENEMARKTM (Borodovsky and McIninch, 1993, Comp. Chem. 17:123).
Identification, Cloning and Expression of S. epidermidis Nucleic Acids
Expression and purification of the S. epidermidis polypeptides of the invention can be performed essentially as outlined below.
To facilitate the cloning, expression and purification of membrane and secreted proteins from S. epidermidis a gene expression system, such as the pET System (Novagen), for cloning and expression of recombinant proteins in E. coli, is selected. Also, a DNA sequence encoding a peptide tag, the His-Tag, is fused to the 3′ end of DNA sequences of interest in order to facilitate purification of the recombinant protein products. The 3′ end is selected for fusion in order to avoid alteration of any 5′ terminal signal sequence.
PCR Amplification and Cloning of Nucleic Acids Containing ORF's Encoding Enzymes
Nucleic acids chosen (for example, from the nucleic acids set forth in SEQ ID NO: 1–SEQ ID. NO: 3772 for cloning from the 18972 strain of S. epidermidis and plasmids are prepared for amplification cloning by polymerase chain reaction (PCR). Synthetic oligonucleotide primers specific for the 5/ and 3/ ends of open reading frames (ORFs) are designed and purchased from GibcoBRL Life Technologies (Gaithersburg, Md., USA). All forward primers (specific for the 5/ end of the sequence) are designed to include an NcoI cloning site at the extreme 5/ terminus. These primers are designed to permit initiation of protein translation at a methionine residue followed by a valine residue and the coding sequence for the remainder of the native S. epidermidis DNA sequence. All reverse primers (specific for the 3/ end of any S. epidermidis ORF) include a EcoRI site at the extreme 5/ terminus to permit cloning of each S. epidermidis sequence into the reading frame of the pET-28b. The pET-28b vector provides sequence encoding an additional 20 carboxy-terminal amino acids including six histidine residues (at the extreme C-terminus), which comprise the His-Tag.
Genomic DNA or plasmid DNA prepared from the 18972 strain of S. epidermidis is used as the source of template DNA for PCR amplification reactions (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). To amplify a DNA sequence containing an S. epidermidis ORF, genomic DNA (50 nanograms) is introduced into a reaction vial containing 2 mM MgCl2, 1 micromolar synthetic oligonucleotide primers (forward and reverse primers) complementary to and flanking a defined S. epidermidis ORF, 0.2 mM of each deoxynucleotide triphosphate; dATP, dGTP, dCTP, dTTP and 2.5 units of heat stable DNA polymerase (Amplitaq, Roche Molecular Systems, Inc., Branchburg, N.J., USA) in a final volume of 100 microliters.
Upon completion of thermal cycling reactions, each sample of amplified DNA is washed and purified using the Qiaquick Spin PCR purification kit (Qiagen, Gaithersburg, Md., USA). All amplified DNA samples are subjected to digestion with the restriction endonucleases, e.g., NcoI and EcoRI (New England BioLabs, Beverly, Mass., USA)(Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). DNA samples are then subjected to electrophoresis on 1.0% NuSeive (FMC BioProducts, Rockland, Me. USA) agarose gels. DNA is visualized by exposure to ethidium bromide and long wave uv irradiation. DNA contained in slices isolated from the agarose gel is purified using the Bio 101 GeneClean Kit protocol (Bio 101 Vista, Calif., USA).
Cloning of S. epidermidis Nucleic Acids into an Expression Vector
The pET-28b vector is prepared for cloning by digestion with restriction endonucleases, e.g., NcoI and EcoRI (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). The pET-28a vector, which encodes a His-Tag that can be fused to the 5/ end of an inserted gene, is prepared by digestion with appropriate restriction endonucleases.
Following digestion, DNA inserts are cloned (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) into the previously digested pET-28b expression vector. Products of the ligation reaction are then used to transform the BL21 strain of E. coli (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994) as described below.
Transformation of Competent Bacteria with Recombinant Plasmids
Competent bacteria, E coli strain BL21 or E. coli strain BL21 (DE3), are transformed with recombinant pET expression plasmids carrying the cloned S. epidermidis sequences according to standard methods (Current Protocols in Molecular; John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994). Briefly, 1 microliter of ligation reaction is mixed with 50 microliters of electrocompetent cells and subjected to a high voltage pulse, after which, samples are incubated in 0.45 milliliters SOC medium (0.5% yeast extract, 2.0% tryptone, 10 mM NaCl, 2.5 mM KCl, 10 mM MgCl2, 10 mM MgSO4 and 20, mM glucose) at 37C with shaking for 1 hour. Samples are then spread on LB agar plates containing 25 microgram/ml kanamycin sulfate for growth overnight. Transformed colonies of BL21 are then picked and analyzed to evaluate cloned inserts as described below.
Identification of Recombinant Expression Vectors with S. epidermidis Nucleic Acids
Individual BL21 clones transformed with recombinant pET-28b S. epidermidis ORFs are analyzed by PCR amplification of the cloned inserts using the same forward and reverse primers, specific for each S. epidermidis sequence, that were used in the original PCR amplification cloning reactions. Successful amplification verifies the integration of the S. epidermidis sequences in the expression vector (Current Protocols in Molecular Biology, John Wiley and Sons, Inc., F. Ausubel et al., eds., 1994).
Isolation and Preparation of Nucleic Acids from Transformants
Individual clones of recombinant pET-28b vectors carrying properly cloned S. epidermidis ORFs are picked and incubated in 5 mls of LB broth plus 25 microgram/ml kanamycin sulfate overnight. The following day plasmid DNA is isolated and purified using the Qiagen plasmid purification protocol (Qiagen Inc., Chatsworth, Calif., USA).
Expression Of Recombinant S. epidermidis Sequences In E. coli 
The pET vector can be propagated in any E. coli K-12 strain e.g. HMS 174, HB101, JM109, DH5, etc. for the purpose of cloning or plasmid preparation. Hosts for expression include E. coli strains containing a chromosomal copy of the gene for T7 RNA polymerase. These hosts are lysogens of bacteriophage DE3, a lambda derivative that carries the lacI gene, the lacUV5 promoter and the gene for T7 RNA polymerase. T7 RNA polymerase is induced by addition of isopropyl-B-D-thiogalactoside (IPTG), and the T7 RNA polymerase transcribes any target plasmid, such as pET-28b, carrying its gene of interest. Strains used include: BL21(DE3) (Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Meth. Enzymol. 185, 60–89).
To express recombinant S. epidermidis sequences, 50 nanograms of plasmid DNA isolated as described above is used to transform competent BL21 (DE3) bacteria as described above (provided by Novagen as part of the pET expression system kit). The lacZ gene (beta- galactosidase) is expressed in the pET-System as described for the S. epidermidis recombinant constructions. Transformed cells are cultured in SOC medium for 1 hour, and the culture is then plated on LB plates containing 25 micrograms/ml kanamycin sulfate. The following day, bacterial colonies are pooled and grown in LB medium containing kanamycin sulfate (25 micrograms/ml) to an optical density at 600 nM of 0.5 to 1.0 O.D. units, at which point, 1 millimolar IPTG was added to the culture for 3 hours to induce gene expression of the S. epidermidis recombinant DNA constructions.
After induction of gene expression with IPTG, bacteria are pelleted by centrifugation in a Sorvall RC-3B centrifuge at 3500×g for 15 minutes at 4° C. Pellets are resuspended in 50 milliliters of cold 10 mM Tris-HCl, pH 8.0, 0.1 M NaCl and 0.1 mM EDTA (STE buffer). Cells are then centrifuged at 2000×g for 20 min at 4° C. Wet pellets are weighed and frozen at −80° C. until ready for protein purification.
A variety of methodologies known in the art can be utilized to purify the isolated proteins. (Current Protocols in Protein Science, John Wiley and Sons, Inc., J. E. Coligan et al., eds., 1995). For example, the frozen cells may be thawed, resupended in buffer and ruptured by several passages through a small volume microfluidizer (Model M-110S, Microfluidics International Corporation, Newton, Mass.). The resultant homogenate may be centrifuged to yield a clear supernatant (crude extract) and following filtration the crude extract may be fractionated over columns. Fractions may be monitored by absorbance at OD280 nm. and peak fractions may analyzed by SDS-PAGE.
The concentrations of purified protein preparations may be quantified spectrophotometrically using absorbance coefficients calculated from amino acid content (Perkins, S. J. 1986 Eur. J. Biochem. 157, 169–180). Protein concentrations are also measured by the method of Bradford, M. M. (1976) Anal. Biochem. 72, 248–254, and Lowry, O. H., Rosebrough, N., Farr, A. L. & Randall, R. J. (1951) J. Biol. Chem. 193, pages 265–275, using bovine serum albumin as a standard.
SDS-polyacrylamide gels of various concentrations may be purchased from BioRad (Hercules, Calif., USA), and stained with Coomassie blue. Molecular weight markers may include rabbit skeletal muscle myosin (200 kDa), E. coli (-galactosidase (116 kDa), rabbit muscle phosphorylase B (97.4 kDa), bovine serum albumin (66.2 kDa), ovalbumin (45 kDa), bovine carbonic anhydrase (31 kDa), soybean trypsin inhibitor (21.5 kDa), egg white lysozyme (14.4 kDa) and bovine aprotinin (6.5 kDa).
Equivalents
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments and methods described herein. The specific embodiments described herein are offered by way of example only, and the invention is to limited only by the terms of the appended claims, along with the full scope of equivalents to which such claims are entitled.












TABLE 2
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_10192177_f1_14
1
3773
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_10578392_f2_146
2
3774
510
169
525
1.7e-50





Description







gp:[GI:g2735511] [LN:SCU96108] [AC:U96108] [PN:YwpF homolog]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


(3R)-hydroxymyristoyl acyl carrier proteindehydrase homolog (fabZ) gene,


partial cds, YwpF homolog, single-strand binding protein homolog (ssb), SceD


precursor (sceD), SceA precursor (sceA) and SceE precursor (sceE) genes,


complete cds, and TenA homolog (tenA) gene, partial cds.] [NT:Orf2; similar


to B. subtilis YwpF protein encoded] [LE:219] [RE:668] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_10632763_f1_106
3
3775
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_10739063_c1_376
4
3776
693
230
601
1.5e-58





Description







gp:[GI:g2735513] [LN:SCU96108] [AC:U96108] [PN:SceD precursor] [GN:sceD]


OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


(3R)-hydroxymyristoyl acyl carrier proteindehydrase homolog (fabZ) gene,


partial cds, YwpF homolog, single-strand binding protein homolog (ssb), SceD


precursor (sceD), SceA precursor (sceA) and SceE precursor (sceE) genes,


complete cds, and TenA homolog (tenA) gene, partial cds.] [NT:secreted


protein] [LE:1825] [RE:2523] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_10939577_f1_79
5
3777
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1206255_f2_219
6
3778
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_12111018_f3_297
7
3779
426
141
174
2.7e-13





Description







gp:[GI:g642965] [LN:ABCARRA] [AC:X70360] [GN:carR] [OR:Azospirillum


brasilense] [DB:genpept-bct1] [DE:A. brasilense carR gene.] [NT:ORF2] [LE:59]


[RE:580] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_12142768_f1_110
8
3780
300
99
110
4.2e-06





Description







pir:[LN:D71245] [AC:D71245] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608] [LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1250_c3_509
9
3781
714
237
644
4.2e-63





Description







gp:[GI:g2735516] [LN:SCU96108] [AC:U96108] [PN:TenA homolog] [GN:tenA]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


(3R)-hydroxymyristoyl acyl carrier proteindehydrase homolog (fabZ) gene,


partial cds, YwpF homolog, single-strand binding protein homolog (ssb), SceD


precursor (sceD), SceA precursor (sceA) and SceE precursor (sceE) genes,


complete cds, and TenA homolog (tenA) gene, partial cds.] [NT:similar to TenA


of B. subtilis, encoded by GenBank] [LE:4569] [RE:>5086] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_12587886_f1_33
10
3782
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1281557_c3_517
11
3783
1131
376
903
1.5e-90





Description







sp:[LN:DDL_BACSU] [AC:P96612] [GN:DDLA:DDL] [OR:BACILLUS SUBTILIS]


[EC:6.3.2.4] [DE:D-ALANINE- -D-ALANINE LIGASE, (D-ALANYLALANINE SYNTHETASE)]


[SP:P96612] [DB:swissprot] >pir:[LN:D69613] [AC:D69613]


[PN:D-alanyl-D-alanine ligase A ddlA] [GN:ddlA] [CL:D-alanine- -D-alanine


ligase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020046:g1881266]


[LN:AB001488] [AC:AB001488] [PN:PROBABLE D-ALANINE- -D-ALANINE LIGASE A]


[GN:ddlA] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [EC:6.3.2.4] [DE:Bacillus subtilis genome sequence, 148 kb


sequence of the region between 35 and 47 degree.] [LE:41311] [RE:42375]


[DI:direct] >gp:[GI:e1182422:g2632756] [LN:BSUB0003] [AC:Z99106:AL009126]


[PN:D-alanyl-D-alanine ligase A] [GN:ddlA] [FN:peptidoglycan biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.2.4] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to 611850.] [SP:P96612]


[LE:105055] [RE:106119] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1292842_c2_415
12
3784
672
223
790
1.4e-78





Description







gp:[GI:d1037675:g4126674] [LN:AB016431] [AC:AB016431] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:912) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus, zinc responsible operon czr genes, complete and


partial cds.] [NT:Hypothetical protein] [LE:2175] [RE:2813] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_12_f1_1
13
3785
243
80
75
0.0084





Description







pir:[LN:A44803] [AC:A44803] [PN:pG1 protein] [OR:Homo sapiens] [SR:, man] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1366660_c3_484
14
3786
1215
404
566
7.8e-55





Description







pir:[LN:A70842] [AC:A70842 ] [PN:probable amiB protein] [GN:amiB]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e1251137:g2894215]


[LN:MTV016] [AC:AL021841:AL123456] [PN:amiB] [GN:amiB] [OR:Mycobacterium


tuberculosis] [DB:genpept-bct1] [DE:Mycobacterium tuberculosis H37Rv


complete genome; segment 143/162.] [NT:Rv3306c, (MTV016.05c), len:394.


amiB, Probable] [LE:3363] [RE:4547] [DI:complement]


>gp:[GI:e1251137:g2894215] [LN:MTV016] [AC:AL021841:AL123456] [PN:amiB]


[GN:amiB] [OR:Mycobacterium tuberculosis] [DB:genpept] [DE:Mycobacterium


tuberculosis H37Rv complete genome; segment 143/162.] [NT:Rv3306c,


(MTV016.05c), len:394. amiB, Probable] [LE:3363] [RE:4547] [DI:complement)
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_13790952_c2_422
15
3787
1194
397
1350
6.5e-138





Description







pir:[LN:B69619] [AC:B69619] [PN:phosphodeoxyribomutase drm] [GN:drm]


[CL:phosphopentomutase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013330:g1303995] [LN:BACJHG42] [AC:D84432:D82370] [PN:YqkN]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:271220] [RE:272404] [DI:direct]


>gp:[GI:e1185619:g2634785] [LN:BSUB0013] [AC:Z99116:AL009126]


[PN:phosphodeoxyribomutase] [GN:drm] [FN:conversion of


ribose-1-P/deoxyribose-1-P to] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:5.4.2.7] [DE:Bacillus subtilis complete genome (section 13 of 21): from


2395261 to 2613730.] [NT:alternate gene name:yqkN] [SP:P46353] [LE:51215]


[RE:52399] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1415877_c2_413
16
3788
912
303
201
3.7e-16





Description







gp:[GI:g4982462] [LN:AE001824] [AC:AE001824:AE000512] [PN:conserved


hypothetical protein] [GN:TM1876] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 136 of 136 of the complete genome.]


[NT:similar to GB:Pyro_h percent identity:60.17;] [LE:4717] [RE:5481] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14160455_c2_466
17
3789
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14225327_f1_91
18
3790
1029
342
1252
1.6e-127





Description







gp:[GI:d1037673:g4126672] [LN:AB016431] [AC:AB016431] [GN:czrB] [FN:Zinc


resistance] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:912) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus, zinc


responsible operon czr genes, complete and partial cds.] [NT:czcD] [LE:724]


[RE:1701] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_1438927_c1_356
19
3791
1686
561
2118
2.7e-219





Description







sp:[LN:PYRG_BACSU] [AC:P13242] [GN:CTRA] [OR:BACILLUS SUBTILIS] [EC:6.3.4.2]


[DE:CTP SYNTHASE, (UTP- -AMMONIA LIGASE) (CTP SYNTHETASE)] [SP:P13242)


[DB:swissprot] >pir:[LN:SYBSTP] [AC:A32354:S55423:C69610] [PN:CTP


synthase, :CTP-synthetase:UTP- -ammonia ligase] [GN:ctrA:pyrG] [CL:CTP


synthase] [OR:Bacillus subtilis] [EC:6.3.4.2] [DB:pir1] [MP:37 min]


>gp:[GI:g143597] [LN:BACSPO0FA] [AC:M22039] [PN:CTP synthetase] [GN:ctrA]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strains JH642 and UOT0550)


DNA] [DB:genpept-bct1] [DE:Bacillus subtillis spo0F, CTP synthetase (ctrA),


and fructose-bisphosphate aldolase (orfY-tsr) genes, complete cds.] [LE:339]


[RE:1946] [DI:direct] >gp:[GI:g853762] [LN:BSDNA320D] [AC:Z49782] [PN:CTP


synthase] [GN:pyrG] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


chromosomal DNA (region 320–321 degrees).] [SP:P13242] [LE:9480] [RE:11087]


[DI:direct] >gp:[GI:e1186216:g2636252] [LN:BSUB0020] [AC:Z99123:AL009126]


[PN:CTP synthetase] [GN:ctrA] [FN:pyrimidine biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:6.3.4.2] [DE:Bacillus subtilis complete


genome (section 20 of 21) from 3798401 to 4010550.] [NT:alternate gene name:


pyrG] [SP:P13242] [LE:11346] [RE:12953] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14454660_f1_26
20
3792
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14492142_f1_81
21
3793
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14634450_f2_208
22
3794
171
56
52
0.029










Description


pir:[LN:H71683] [AC:H71683] [PN:hypothetical protein RP285] [GN:RP285]


[OR:Rickettsia prowazekii] [DB:pir2] >gp:[GI:e1342590:g3860846] [LN:RPXX02]


[AC:AJ235271:AJ235269] [PN:unknown] [GN:RP285] [OR:Rickettsia prowazekii]


[DB:genpept-bct1] [DE:Rickettsia prowazekii strain Madrid E, complete


genome; segment 2/4.] [LE:68773] [RE:69213] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14849093_c3_469
23
3795
294
97
133
6.0e-09





Description







pir:[LN:F71245] [AC:F71245] [PN:hypothetical protein PHS004] [GN:PHS004]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030236:g3256610] [LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469] [PN:58aa


long hypothetical protein] [GN:PHS004] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [NT:similar to


GENPEPT:Z47547 percent identity:50.000] [LE:195255] [RE:195431] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_14855051_c1_401
24
3796
471
156
409
3.4e-38





Description







pir:[LN:H69773] [AC:H69773] [PN:conserved hypothetical protein ydcK]


[GN:ydcK] [CL:hypothetical protein HI1173] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020070:g1881290] [LN:AB001488] [AC:AB001488] [GN:ydcK]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:FUNCTION UNKNOWN.] [LE:61365]


[RE:61817] [DI:direct] >gp:[GI:e1182445:g2632779] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:ydcK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21)


from 402751 to 611850.] [NT:similar to hypothetical proteins] [LE:125110]


[RE:125562] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_15798901_c3_471
25
3797
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_16251305_c3_501
26
3798
786
261
724
1.4e-71





Description







sp:[LN:ATP6_BACST] [AC:P42010] [GN:ATPB] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:3.G.1.34] [DE:ATP SYNTHASE A CHAIN, (PROTEIN 6)] [SP:P42010]


[DB:swissprot] >gp:[GI:d1007828:g534857] [LN:BACATPSAC] [AC:D38059]


[PN:ATPase subunit a] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (strain IFO1035) (library:library o] [DB:genpept-bct1]


[DE:Bacillus stearothermophilus genes for ATPase subunits a and c, complete


cds.] [LE:256] [RE:966] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_165888_f3_321
27
3799
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_19693831_c1_350
28
3800
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_19728433_f2_133
29
3801
1215
404
691
4.4e-68





Description







sp:[LN:YWCF_BACSU] [AC:P39604] [GN:YWCF:IPA-42D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 43.3 KD PROTEIN IN QOXD-VPR INTERGENIC REGION] [SP:P39604]


[DB:swissprot] >pir:[LN:S39697] [AC:S39697:A70053] [PN:cell-division


protein homolog ywcF:protein ipa-42d] [GN:ywcF] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g413966] [LN:BSGENR] [AC:X73124] [GN:ipa-42d] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).]


[SP:P39604] [LE:44053] [RE:45234] [DI:direct] >gp:[GI:e1186311:g2636347]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywcF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401 to 4010550.] [NT:alternate gene name:ipa-42d;


similar to] [SP:P39604] [LE:112728] [RE:113909] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_19739675_c3_494
30
3802
636
211
638
1.8e-62





Description







sp:[LN:KITH_BACSU] [AC:Q03221] [GN:TDK] [OR:BACILLUS SUBTILIS] [EC:2.7.1.21]


[DE:THYMIDINE KINASE,] [SP:Q03221] [DB:swissprot] >pir:[LN:S55432]


[AC:S55432:D69721] [PN:thymidine kinase, tdk] [GN:tdk] [CL:thymidine


kinase] [OR:Bacillus subtilis] [EC:2.7.1.21] [DB:pir2] >gp:[GI:g405819]


[LN:BACRHOTDKX] [AC:M97678] [PN:thymidine kinase] [GN:tdk] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (Transposon Tn917 insertional library) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis OrfR, 3′ end; OrfQ; transcriptional


terminator(rho) gene; ribosomal protein L31; thymidine kinase (tdk)


gene, complete cds.] [NT:Incorrect sequence given in Quirk et al. citation,]


[LE:3334] [RE:39211] [DI:direct] >gp:[GI:g853771] [LN:BSDNA320D] [AC:Z49782]


[PN:thymidine kinase] [GN:tdk] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis chromosomal DNA (region 320–321 degrees).] [SP:Q03221]


[LE:18786] [RE:19373] [DI:direct] >gp:[GI:e1184612:g2636231] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:thymidine kinase] [GN:tdk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.1.21] [DE:Bacillus subtilis complete genome


(section 19 of 21): from 3597091 to 3809700.] [SP:Q03221] [LE:204370]


[RE:204957] [DI:complement] >gp:[GI:e1186207:g2636243] [LN:BSUB0020]


[AC:Z99123:AL009126] [PN:thymidine kinase] [GN:tdk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.1.21] [DE:Bacillus subtilis complete genome


(section 20 of 21): from 3798401 to 4010550.] [SP:Q03221] [LE:3060] [RE:3647]


[DI:complement] >gp:[GI:e1184612:g2636231] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:thymidine kinase] [GN:tdk] [OR:Bacillus subtilis]


[DB:genpept] [EC:2.7.1.21] [DE:Bacillus subtilis complete genome (section 19


of 21): from 3597091 to 3809700.] [SP:Q03221] [LE:204370] [RE:204957]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20032527_f2_127
31
3803
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20156686_c3_498
32
3804
573
190
415
7.8e-39





Description







sp:[LN:YWLG_BACSU] [AC:P39157] [GN:YWLG:IPC-33D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 19.4 KD PROTEIN IN SPOIIR-GLYC INTERGENIC REGION]


[SP:P39157] [DB:swissprot] >pir:[LN:I40482] [AC:I40482:D70062:S49362]


[PN:hypothetical protein ywlG:ipc-33d protein] [GN:ywlG:ipc-33d


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g556885] [LN:BSSPORUPP] [AC:Z38002]


[PN:Unknown] [GN:ipc-33d] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis spoII-R, glyc and upp genes.] [SP:P39157] [LE:4750] [RE:5292]


[DI:direct] >gp:[GI:e1184597:g2636216] [LN:BSUB0019] [AC:Z99122:AL009126]


[GN:ywlG] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091 to 3809700.]


[NT:alternate gene name:ipc-33d] [SP:P39157] [LE:192609] [RE:193151]


[DI:complement] >gp:[GI:e1184597:g2636216] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywlG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:ipc-33d] [SP:P39157]


[LE:192609] [RE:193151] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20348453_c3_518
33
3805
1587
528
1226
9.0e-125





Description







gp:[GI:g4409804] [LN:AF091502] [AC:AF091502] [PN:autoaggregation-mediating


protein] [GN:aggH] [OR:Lactobacillus reuteri] [DB:genpept-bct2]


[DE:Lactobacillus reuteri autoaggregation-mediating protein (aggH)gene,


complete cds.] [NT:AggH; putative extracellular DEAD-box RNA helicase]


[LE:181] [RE:1674] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20360687_c3_516
34
3806
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20569052_c2_457
35
3807
327
108
198
7.8e-16





Description







pir:[LN:G70041] [AC:G70041] [PN:conserved hypothetical protein yvgZ]


[GN:yvgZ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186040:g2635865]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvgZ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21): from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[LE:43408] [RE:43713] [DI:complement)
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20572255_f1_34
36
3808
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_20900062_f2_215
37
3809
147
48
53
0.045





Description







gp:[GI:g1086838] [LN:CELF10E7] [AC:U41264] [GN:F10E7.2] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain = Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid F10E7.] [NT:also contains weak similarity


to a C2H2-type zinc] [LE:21609:21709:23024:23277]


[RE:21661:21796:23149:23753] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2117125_c2_432
38
3810
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2125637_f3_335
39
3811
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_21517182_f3_322
40
3812
375
124
396
8.1e-37





Description







gp:[GI:d1037674:g4126673] [LN:AB01643l] [AC:AB016431] [GN:CzrA]


[FN:repressor] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:912) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus, zinc


responsible operon czr genes, complete and partial cds.] [LE:1703] [RE:2023]


[DI:complement] >gp:[GI:g3445566] [LN:AF044951] [AC:AF044951] [PN:repressor


protein] [GN:rzcA] [FN:zinc and cobalt transport repressor]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


repressor protein (rzcA) and transportprotein (rzcB) genes, complete cds.]


[LE:193] [RE:513] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_21562827_f3_306
41
3813
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_21756937_c1_379
42
3814
672
223
401
2.4e-37





Description







sp:[LN:THIE_BACSU] [AC:P39594] [GN:THIE:THIC:IPA-26D] [OR:BACILLUS SUBTILIS]


[EC:2.5.1.3] [DE:PYROPHOSPHORYLASE) (TMP-PPASE) (THIAMIN-PHOSPHATE


SYNTHASE)] [SP:P39594] [DB:swissprot] >pir:[LN:S39681] [AC:539681:E69722]


[PN:thiamin-phosphate pyrophosphorylase, thiC:protein ipa-26d] [GN:thiC]


[CL:thiE protein:thiamin-phosphate pyrophosphorylase homology] [OR:Bacillus


subtilis] [EC:2.5.1.3] [DB:pir2] >gp:[GI:g413950] [LN:BSGENR] [AC:X73124]


[GN:ipa-26d] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic


region (325 to 333).] [SP:P39594] [LE:26188] [RE:26856] [DI:direct]


>gp:[GI:e1186328:g2636364] [LN:BSUB0020] [AC:Z99123:AL009126]


[PN:thiamine-phosphate pyrophosphorylase] [GN:thiC] [FN:substitution of the


pyrophosphate of] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.5.1.3]


[DE:Bacillus subtilis complete genome (section 20 of 21): from 3798401 to


4010550.] [NT:alternate gene name:ipa-26d, ywbK] [SP:P39594] [LE:131103]


[RE:131771] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2230303_f3_265
43
3815
669
222
346
1.6e-31





Description







sp:[LN:YPGQ_BACSU] [AC:P54168] [GN:YPGQ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 23.1 KD PROTEIN IN BSAA-ILVD INTERGENIC REGION] [SP:P54168]


[DB:swissprot] >pir:[LN:E69935] [AC:E69935] [PN:conserved hypothetical


protein ypgQ] [GN:ypgQ] [CL:conserved hypothetical protein AF0994]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256633] [LN:BACYACA] [AC:L77246]


[GN:ypgQ] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


(YAC10-9 clone) DNA region between the serA and kdg loci.] [NT:putative]


[LE:16914] [RE:17531] [DI:direct] >gp:[GI:e1183636:g2634609] [LN:BSUB0012]


[AC:Z99115:AL009126] [GN:ypgQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 12 of 21):


from 2195541 to 2409220.] [NT:similar to hypothetical proteins] [SP:P54168]


[LE:107621] [RE:108238] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_22460882_c3_482
44
3816
687
228
612
1.0e-59





Description







gp:[GI:e1191863:g809660] [LN:BSDNPOP] [AC:X82174] [PN:deoxyribose-phosphate


aldolase] [GN:dra] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.1.2.4]


[DE:B. subtilis operon contg. dra, nupC and pdp genes.] [SP:P39121] [LE:1462]


[RE:2106] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_22692137_c2_464
45
3817
486
161
688
9.2e-68





Description







gp:[GI:e279934:g1934990] [LN:SASIGFACB] [AC:Y07645] [GN:rsbW]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus sigB gene.]


[LE:2220] [RE:2699] [DI:direct] >gp:[GI:e284999:g1729796] [LN:SAUSIGB]


[AC:Y09929] [GN:rsbW] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus rsbU, rsbV, rsbW & sigB genes.] [LE:2233] [RE:2712] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23437803_c3_523
46
3818
2187
728
1827
1.9e-188





Description







gp:[GI:e279936:g1934992] [LN:SASIGFACB] [AC:Y07645] [GN:ORF6]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus sigB gene.]


[LE:3878] [RE:>5272] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23439002_c2_417
47
3819
1404
467





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23446887_f3_323
48
3820
1155
384
548
6.3e-53





Description







gp:[GI:g4097757] [LN:SAU67965] [AC:U67965] [PN:lytic regulatory protein]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus lytic


regulatory protein gene, complete cds.] [LE:712] [RE:1824] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23594057_c1_362
49
3821
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23595137_c3_480
50
3822
501
166
423
1.1e-39





Description







pir:[LN:H69618] [AC:H69618] [PN:Stress- and starvation-induced gene


controlled by sigma-B dps] [GN:dps] [CL:hypothetical protein HI1349]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185938:g2635549] [LN:BSUB0016]


[AC:Z9912.9:AL009126] [GN:dps] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 16 of 21): from 2997771 to


3213410.] [NT:alternate gene name:ytkB; stress- and] [SP:P80879]


[LE:137548] [RE:137985] [DI:complement] >gp:[GI:g2293159] [LN:AF008220]


[AC:AF008220] [GN:ytkB] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similarity to HI1349


from H. influenzae] [LE:42442] [RE:42879] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23625008_c1_347
51
3823
963
320
749
3.2e-74





Description







gp:[GI:d1039089:g4512388] [LN:AB011838] [AC:AB011838] [PN:mannnose-6


phospate isomelase] [GN:ydhS] [OR:Bacillus halodurans] [SR:Bacillus


halodurans (strain:C-125) DNA, clone_lib:lambda no.] [DB:genpept-bct1]


[EC:5.3.1.8] [DE:Bacillus halodurans C-125 genomic DNA, 6A fragment, clone


ALBAC004.] [NT:similar to B. subtilis ydhS gene (53–69% identity)] [LE:7672]


[RE:8619] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23625387_c1_402
52
3824
219
72





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23634678_c2_424
53
3825
1194
397





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23634702_c2_453
54
3826
792
263
498
1.3e-47





Description







sp:[LN:THIM_BACSU] [AC:P39593] [GN:THIM:THIK:IPA-25D] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.50] [DE:HYDROXYETHYLTHIAZOLE KINASE) (THZ KINASE) (TH KINASE)]


[SP:P39593] [DB:swissprot] >pir:[LN:539680] [AC:S39680:G69722]


[PN:hydroxyethylthiazole kinase, thiK:protein ipa-25d] [GN:thiK]


[CL:hydroxyethylthiazole kinase:hydroxyethylthiazole kinase homology]


[OR:Bacillus subtilis] [EC:2.7.1.50] [DB:pir2] >gp:[GI:g413949] [LN:BSGENR]


[AC:X73124] [GN:ipa-25d] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic region (325 to 333).] [SP:P39593] [LE:25373]


[RE:26191] [DI:direct] >gp:[GI:e1186329:g2636365] [LN:BSUB0020]


[AC:Z99123:AL009126] [PN:hydroxyethylthiazole kinase] [GN:thiK]


[FN:phosphorylation of] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.7.1.50] [DE:Bacillus subtilis complete genome (section 20 of 21): from


3798401 to 4010550.] [NT:alternate gene name:ipa-25d, ywbJ] [SP:P39593]


[LE:1317681] [RE:132586] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23651702_c1_343
55
3827
870
289
255
7.1e-22





Description







pir:[LN:C70070] [AC:C70070] [PN:conserved hypothetical protein ywtE]


[GN:ywtE] [CL:hypothetical protein ywpJ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184491:g2636110] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywtE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:similar to


hypothetical proteins] [LE:97330] [RE:98190] [DI:direct]


>gp:[GI:e308093:g1894770] [LN:BSZ92954] [AC:Z92954] [GN:ywtE] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis yws[A,B,C,D,E,F,G] and gerBC


genes.] [NT:product similar to Bacillus subtilis YxeH and YcsE] [LE:4292]


[RE:5152] [DI:complement] >gp:[GI:e1184491:g2636110] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywtE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:similar to hypothetical proteins] [LE:97330]


[RE:98190] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_23711642_c1_397
56
3828
1026
341
1445
5.6e-148





Description







gp:[GI:e284997:g1729794] [LN:SAUSIGB] [AC:Y09929] [GN:rsbU]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus rsbU, rsbV, rsbW &


sigB genes.] [LE:784] [RE:1785] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2379658_f2_237
57
3829
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2383253_c2_405
58
3830
399
132





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24015687_c2_438
59
3831
465
154
119
1.8e-07





Description







sp:[LN:ATPZ_BACP3] [AC:P09354] [OR:BACILLUS PS3] [SR:,THERMOPHILIC BACTERIUM


PS-3] [DE:ATP SYNTHASE PROTEIN I] [SP:P09354] [DB:swissprot]


>pir:[LN:S01397] [AC:S01397] [PN:H+-transporting ATP synthase, chain I]


[CL:Bacillus H+-transporting ATP synthase chain I] [OR:thermophilic


bacterium PS-3] [EC:3.6.1.34] [DB:pir2] >gp:[GI:g458091] [LN:PS3TF0F1]


[AC:X07804:X07374] [OR:thermophilic bacterium PS3] [DB:genpept-bct1]


[DE:Thermophilic bacterium PS3 TF0F-1 operon for ATP synthase complex.]


[NT:I protein (AA 1–127)] [SP:P09354] [LE:433] [RE:816] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24074137_c3_492
60
3832
1332
443
1360
5.7e-139





Description







gp:[GI:g143434] [LN:BACRHOTDKX] [AC:M97678] [PN:Rho Factor] [GN:rho]


[FN:transcriptional terminator] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(Transposon Tn917 insertional library) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis OrfR, 3′ end; OrfQ; transcriptional terminator (rho) gene; ribosomal


protein L31; thymidine kinase (tdk) gene,complete cds.] [LE:1643] [RE:2926] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24228411_c1_375
61
3833
399
132
358
8.6e-33





Description







gp:[GI:g2735512] [LN:SCU96108] [AC:U96108] [PN:single-strand binding protein


homolog] [GN:ssb] [OR:Staphylococcus carnosus] [DB:genpept-bct2]


[DE:Staphylococcus carnosus (3R)-hydroxymyristoyl acyl carrier


proteindehydrase homolog (fabZ) gene, partial cds, YwpF


homolog, single-strand binding protein homolog (ssb), SceD precursor


(sceD), SceA precursor (sceA) and SceE precursor (sceE) genes, complete cds,


and TenA homolog (tenA) gene, partial cds.] [NT:SSB] [LE:857] [RE:1294] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24235952_c1_398
62
3834
327
108
501
6.0e-48





Description







gp:[GI:e284998:g1729795] [LN:SAUSIGB] [AC:Y09929] [GN:rsbV]


(OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus rsbU, rsbV, rsbW &


sigB genes.] [LE:1905] [RE:2231] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24245327_c1_364
63
3835
714
237
843
3.5e-84





Description







gp:[GI:e258331:g1765902] [LN:BCUPPGLYA] [AC:X99545] [PN:uracil


phosphoribosyltransferase] [GN:upp] [OR:Bacillus caldolyticus]


[DB:genpept-bct1] [DE:B. caldolyticus upp gene.] [SP:P7088l] [LE:431]


[RE:1060] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24254202_c1_368
64
3836
1512
503
2050
4.3e-212





Description







sp:[LN:ATPA_BACME] [AC:P17674] [GN:ATPA] [OR:BACILLUS MEGATERIUM]


[EC:3.6.1.34] [DE:ATP SYNTHASE ALPHA CHAIN,] [SP:P17674] [DB:swissprot]


>pir:[LN:F31482] [AC:F31482] [PN:H+-transporting ATP synthase, alpha chain]


[CL:H+-transporting ATP synthase alpha chain:H+-transporting ATP synthase


alpha chain homology] [OR:Bacillus megaterium] [EC:3.6.1.34] [DB:pir2]


>gp:[GI:g142559] [LN:BACATPA] [AC:M20255:J04455:M18352:M23924] [PN:ATP


synthase alpha subunit] [OR:Bacillus megaterium] [SR:B. megaterium (QM B1551)


DNA, clones pWSB100, pCAH1.3, and pWPC208] [DB:genpept-bct1]


[DE:B. megaterium ATP synthase i, a, c, b, delta, alpha, gamma, beta and epsilon


subunit genes, complete cds, and ORF.] [LE:2853] [RE:4361] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24256562_c1_381
65
3837
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24350953_f1_2
66
3838
132
43
72
0.017





Description







pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP 000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24353427_c3_503
67
3839
543
180
229
4.0e-19





Description







sp:[LN:ATPD_BACSU] [AC:P37811] [GN:ATPH] [OR:BACILLUS SUBTILIS]


[EC:3.G.1.34] [DE:ATP SYNTHASE DELTA CHAIN,] [SP:P37811] [DB:swissprot]


>pir:[LN:I40365] [AC:I40365:D69592:S39253] [PN:H+-transporting ATP


synthase, delta chain (atpH)] [GN:atpH] [CL:H+-transporting ATP synthase


delta chain] [OR:Bacillus subtilis] [EC:3.6.1.34] [DB:pir2] >gp:[GI:g433988]


[LN:BSATPASE] [AC:Z28592] [PN:ATP synthase subunit delta] [GN:atpH]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis(168) atpase genes


for ATP synthase subunits i, a, c ,b, delta, alpha, gamma, beta, epsilon.]


[SP:P37811] [LE:2484] [RE:3029] [DI:direct] >gp:[GI:e1184590:g2636209]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:ATP synthase (subunit delta)]


[GN:atpH] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.6.1.34]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [SP:P37811] [LE:187368] [RE:187913] [DI:complement]


>gp:[GI:e1184590:g2636209] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:ATP


synthase (subunit delta)] [GN:atpH] [OR:Bacillus subtilis] [DB:genpept]


[EC:3.6.1.34] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [SP:P37811] [LE:187368] [RE:187913] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24392193_c1_346
68
3840
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24406260_c2__433
69
3841
1296
431
1258
3.7e-128





Description







sp:[LN:MURA_BACSU] [AC:P19670:Q03225] [GN:MURA:MURZ] [OR:BACILLUS SUBTILIS]


[EC:2.5.1.7] [DE:ENOLPYRUVYL TRANSFERASE) (EPT)] [SP:P19670:Q03225]


[DB:swissprot] >pir:[LN:G32354] [AC:S55428:G32354:H69662]


[PN:UDP-N-acetylglucosamine 1-carboxyvinyltransferase, murZ] [GN:murZ]


[CL:UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurZ] [OR:Bacillus


subtilis] [EC:2.5.1.7] [DB:pir2] >gp:[GI:g853767] [LN:BSDNA320D]


[AC:Z49782] [PN:UDP-N-acetylglucosamine] [GN:murZ] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 320–321 degrees).]


[SP:P19670] [LE:14403] [RE:15692] [DI:direct] >gp:[GI:e1184616:g2636235]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:UDP-N-acetylglucosamine] [GN:murZ]


[FN:peptidoglycan biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.5.1.7] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:murZ, lssF, rev-4] [LE:208051]


[RE:209340] [DI:complement] >gp:[GI:e118G211:g2636247] [LN:BSUB0020]


[AC:Z99123:AL00912G] [PN:UDP-N-acetylglucosamine] [GN:murZ]


[FN:peptidoglycan biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.5.1.7] [DE:Bacillus subtilis complete genome (section 20 of 21): from


3798401 to 4010550.] [NT:alternate gene name:murZ, lssF, rev-4] [LE:6741]


[RE:8030] [DI:complement] >gp:[GI:e1184616:g2636235] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-N-acetylglucosamine] [GN:murZ]


[FN:peptidoglycan biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.5.1.7] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:murZ, lssF, rev-4] [SP:P19670]


[LE:208051] [RE:209340] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24407631_f3_252
70
3842
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24415933_c2_418
71
3843
435
144
83
0.026





Description







sp:[LN:YUXK_BACSU] [AC:P40761:O05233] [GN:YUXK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 15.7 KD PROTEIN IN PBPD-COMA INTERGENIC REGION (ORF2)]


[SP:P40761:O05233] [DB:swissprot] >pir:[LN:B55220] [AC:B55220:D70025]


[PN:hypothetical protein yuxK:pbpD 3′-region hypothetical protein] [GN:yuxK]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g520537] [LN:BSU11882]


[AC:U11882] [PN:unknown] [GN:pbpD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis orf1, partial cds, penicillin-binding protein 4(pbpD)


gene, complete cds, and orf2, complete cds.] [NT:orf2] [LE:2760] [RE:3173]


[DI:direct] >gp:[GI:e1184228:g2635646] [LN:BSUB0017] [AC:Z99120:AL009126]


[GN:yuxK] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 17 of 21): from 3197001 to 3414420.]


[NT:alternate gene name:yugD] [SP:P40761] [LE:37885] [RE:38298] [DI:direct]


>gp:[GI:e311522:g1934785] [LN:BSZ93933] [AC:Z93933] [PN:unknown] [GN:yugD]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment


from yugA to yugD.] [SP:P40761] [LE:7318] [RE:7731] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24508563_c2_436
72
3844
1092
363
1226
9.0e-125





Description







sp:[LN:RF1_BACSU] [AC:P45872] [GN:PRFA] [OR:BACILLUS SUBTILIS] [DE:PEPTIDE


CHAIN RELEASE FACTOR 1 (RF-1)] [SP:P45872] [DB:swissprot] >pir:[LN:S55437]


[AC:S55437:G69681] [PN:translation releasing factor RF-1:peptide chain


release factor 1] [GN:prfA:RF-1] [CL:translation releasing factor]


[OR:Bacillus subtilis] [DB:pir1] >gp:[GI:g853776] [LN:BSDNA320D] [AC:Z49782]


[PN:peptide chain release factor 1] [GN:prfA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 320–321 degrees).]


[NT:gtg start codon] [SP:P45872] [LE:23623] [RE:24693] [DI:direct]


>gp:[GI:e1184607:g2636226] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:peptide


chain release factor 1] [GN:prfA] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [SP:P45872] [LE:199050] [RE:200120] [DI:complement]


>gp:[GI:e1184607:g2636226] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:peptide


chain release factor 1] [GN:prfA] [OR:Bacillus subtilis] [DB:genpept]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [SP:P45872] [LE:199050] [RE:200120] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24625216_f3_264
73
3845
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24641687_c2_437
74
3846
426
141
237
5.7e-20





Description







sp:[LN:YWLE_BACSU] [AC:P39155] [GN:YWLE:IPC-31D] [OR:BACILLUS SUBTILIS]


[EC:3.1.3.48] [DE:(EC 3.1.3.48)] [SP:P39155] [DB:swissprot] >pir:[LN:S49360]


[AC:I40479:B70062:S49360] [PN:protein-tyrosine-phosphatase, homolog ywlE,


low molecular weight:ipc-31d protein] [GN:ywlE:ipc-31d


[CL:protein-tyrosine-phosphatase, low molecular weight] [OR:Bacillus


subtilis] [EC:3.1.3.48] [DB:pir1] >gp:[GI:g556883] [LN:BSSPORUPP]


[AC:Z38002] [PN:Unknown] [GN:ipc-31d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis spoII-R, glyC and upp genes.] [SP:P39155]


[LE:3679] [RE:4131] [DI:direct] >gp:[GI:e1184599:g2636218] [LN:BSUB0019)


[AC:Z99122:AL009126] [GN:ywlE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [NT:alternate gene name:ipc-31d; similar to]


[SP:P39155] [LE:193770] [RE:194222] [DI:complement]


>gp:[GI:e1184599:g2636218] [LN:BSUB00l9] [AC:Z99122:AL009126] [GN:ywlE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:alternate


gene name:ipc-31d; similar to] [SP:P39155] [LE:193770] [RE:194222]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24642963_c2_458
75
3847
216
71
81
0.0019





Description







sp:[LN:COPP_HELFE] [AC:O32620] [GN:COPP] [OR:HELICOBACTER FELIS] [DE:COP


ASSOCIATED PROTEIN (COPPER ION BINDING PROTEIN)] [SP:O32620] [DB:swissprot]


>gp:[GI:e353967:g2660543] [LN:HFAJ1932] [AC:AJ001932] [GN:copP] [FN:divalent


cation binding protein] [OR:Helicobacter felis] [DB:genpept-bct1]


[DE:Helicobacter felis ftsH, copA, copP genes and two ORF's.] [SP:O32620]


[LE:5306] [RE:5506] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24647558_c1_352
76
3848
357
118





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_24665932_c3_496
77
3849
840
279
477
2.1e-45





Description







sp:[LN:HEMK_BACSU] [AC:P45873] [GN:YWKE] [OR:BACILLUS SUBTILIS] [DE:HEMK


PROTEIN HOMOLOG] [SP:P45873] [DB:swissprot] >pir:[LN:S55438]


[AC:S55438:D70061] [PN:protoporphyrinogen oxidase homolog ywkE] [GN:ywkE


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g853777] [LN:BSDNA320D] [AC:Z49782]


[GN:ywkE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


chromosomal DNA (region 320–321 degrees).] [NT:product similar to E. coli


PRFA2 protein] [SP:P45873] [LE:24695] [RE:25561] [DI:direct]


>gp:[GI:e1184606:g2636225] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywkE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:similar to


protoporphyrinogen oxidase] [SP:P45873] [LE:198182] [RE:199048]


[DI:complement] >gp:[GI:e1184606:g2636225] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywkE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:similar to protoporphyrinogen oxidase] [SP:P45873]


[LE:198182] [RE:199048] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2541301_c3_505
78
3850
351
116
180
6.3e-14





Description







pir:[LN:G70070] [AC:G70070] [PN:hypothetical protein ywzB] [GN:ywzB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184584:g2636203] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywzB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [LE:182127] [RE:182357] [DI:complement]


>gp:[GI:e1184584:g2636203] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywzB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [LE:182127]


[RE:182357] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_25422081_c3_475
79
3851
204
67
84
0.014





Description







sp:[LN:ETF1_FOWP1] [AC:P21966] [GN:FPD6] [OR:FOWLPOX VIRUS] [SR:FP-1,]


[DE:EARLY TRANSCRIPTION FACTOR 70 KD SUBUNIT] [SP:P21966] [DB:swissprot]


>pir:[LN:F35216] [AC:F35216] [PN:FPD6 protein] [CL:vaccinia virus early


transcription factor 70K chain] [OR:fowlpox virus] [DB:pir2] >gp:[GI:g61229]


[LN:POFPHIND] [AC:X17202] [GN:ORF FPD6] [FN:Vaccinia D6 homolog] [OR:Fowlpox


virus] [DB:genpept-vr1] [DE:Fowlpox virus DNA sequence (Hind III fragment).]


[SP:P21966] [LE:6614] [RE:8431] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26173800_c1_387
80
3852
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26182767_c2_426
81
3853
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26212756_f2_137
82
3854
1488
495
1477
2.3e-151





Description







sp:[LN:YWNE_BACSU] [AC:P71040] [GN:YWNE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 55.8 KD PROTEIN IN SPOIIQ-MTA INTERGENIC REGION]


[SP:P71040] [DB:swissprot] >pir:[LN:G70063] [AC:G70063] [PN:cardiolipin


synthase homolog ywnE] [GN:ywnE] [CL:Bacillus probable cardiolipin


synthetase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184565:g2636184]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywnE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21): from 3597091 to 3809700.] [NT:similar to cardiolipin synthase]


[SP:P71040] [LE:164628] [RE:166076] [DI:direct] >gp:[GI:e269549:g1592701]


[LN:BSUEROP] [AC:Y08559] [PN:Unknown] [GN:ywnE] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis urease operon and downstream DNA.]


[NT:Product similar to Escherichia coli cardiolipin] [SP:P71040] [LE:5155]


[RE:6603] [DI:complement] >gp:[GI:e1184565:g2636184] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywnE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:similar to cardiolipin synthase] [SP:P71040]


[LE:164628] [RE:166076] [D1:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26360260_c3_520
83
3855
375
124
416
6.1e-39





Description







gp:[GI:e1340260:g3850850] [LN:SAU1G431] [AC:Y16431] [PN:dpj protein]


[GN:dpj] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus dpj, alr genes, partial kdpC gene and 4ORF's.] [LE:2975] [RE:3334]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26751542_f1_73
84
3856
492
163
577
5.3e-56





Description







pir:[LN:A64533] [AC:A64533] [PN:conserved hypothetical protein HP0105]


[CL:conserved hypothetical protein H10491] [OR:Helicobacter pylori]


[DB:pir2] >gp:[GI:g2313l88] [LN:AE000532] [AC:AE000532:AE000511]


[PN:conserved hypothetical protein] [GN:HP0105] [OR:Helicobacter pylori


26695] [DB:genpept-bct2] [DE:Helicobacter pylori 26695 section 10 of 134 of


the complete genome.] [NT:similar to GB:L42023 SP:P44007 PID:1003866]


[LE:5494] [RE:5961] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_26757677_c2_408
85
3857
1377
458
2163
4.6e-224





Description







gp:[GI:e1352473:g3892895] [LN:SAARGFEMD] [AC:Y15477]


[PN:phosphoglucosamine-mutase] [GN:glmM] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus argI, glmM genes and ORF1 and


ORF2.] [LE:2968] [RE:4323] [DI:direct] >gp:[GI:e283110:g1684749] [LN:SAFEMD]


[AC:Y09570] [GN:femD] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus femD gene.] [LE:511] [RE:1866] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2775462_c1_394
86
3858
522
173
331
6.2e-30





Description







gp:[GI:e1340259:g3850849] [LN:SAU16431] [AC:Y16431] [PN:hypothetical


protein] [GN:ORF4] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus dpj, alr genes, partial kdpC gene and 4ORF's.]


[LE:2477] [RE:2971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_2925275_f1_20
87
3859
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_29307312_c3_470
88
3860
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_29695252_c3_497
89
3861
1098
365
665
2.5e-65





Description







sp:[LN:YWLC_BACSU] [AC:P39153] [GN:YWLC:IPC-29D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 37.0 KD PROTEIN IN SPOIIR-GLYC INTERGENIC REGION]


[SP:P39153] [DB:swissprot] >pir:[LN:140476] [AC:140476:H70061:S49358


[PN:conserved hypothetical protein ywlC:SUA5 homolog ipc-29d]


[GN:ywlC:ipc-29d] [CL:Bacillus subtilis conserved hypothetical protein


ywlC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g556881] [LN:BSSPORUPP]


[AC:Z38002] [PN:Similar to Saccharomyces cerevisiae SUA5] [GN:ipc-29d]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis spoII-R, glyC and


upp genes.] [SP:P39153] [LE:1927] [RE:2967] [DI:direct]


>gp:[GI:e1184601:g2636220] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywlC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:alternate


gene name:ipc-29d; similar to] [SP:P39153] [LE:194934] [RE:195974]


[DI:complement] >gp:[GI:e1184601:g2636220] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywlC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:ipc-29d; similar to]


[SP:P39153] [LE:194934] [RE:195974] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_29879407_c2_410
90
3862
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_30682816_c1_367
91
3863
537
178
376
1.1e-34





Description







sp:[LN:ATPF_BACME] [AC:P20601] [GN:ATPF] [OR:BACILLUS MEGATERIUM]


[EC:3.6.1.34] [DE:ATP SYNTHASE B CHAIN,] [SP:P20601] [DB:swissprot]


>pir:[LN:D31482] [AC:D31482] [PN:H+-transporting ATP synthase, chain b]


[CL:H+-transporting ATP synthase chain I] [OR:Bacillus megaterium]


[EC:3.6.1.34] [DB:pir2] >gp:[GI:g142557] [LN:BACATPA]


[AC:M20255:J04455:M18352:M23924] [PN:ATP synthase b subunit] [OR:Bacillus


megaterium] [SR:B. megaterium (QM B1551) DNA, clones pWSB100, pCAH1.3, and


pWPC208] [DB:genpept-bct1] [DE:B. megaterium ATP synthase


i, a, c, b, delta, alpha, gamma, beta and epsilon subunit genes, complete cds, and


ORF.] [LE:1777] [RE:2295] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_31637_c2_406
92
3864
891
296
1229
4.3e-125





Description







gp:[GI:e1352471:g3892893] [LN:SAARGFEMD] [AC:Y15477] [PN:hypothetical


protein] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus argI, glmM genes and ORF1 and ORF2.] [NT:orf1] [LE:1198] [RE:2007] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_33412800_c2_429
93
3865
882
293
135
1.2e-08





Description







pir:[LN:B69595] [AC:B69595] [PN:spermine/spermidine acetyltransferase bltD]


[GN:bltD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013033:g1303698]


[LN:BACJHG42] [AC:D84432:D82370] [PN:BltD] [OR:Bacillus subtilis]


[SR:Bacillus subtilis] (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.] [LE:811]


[RE:1269] [DI:complement] >gp:[GI:e1183889:g2635105] [LN:BSUB0014]


[AC:Z99117:AL009126] [PN:spermine/spermidine acetyltransferase] [GN:bltD]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.3.1.-] [DE:Bacillus subtilis


complete genome (section 14 of 21): from 2599451 to 2812870.] [NT:alternate


gene name:bmr2D, bmtD] [SP:P39909] [LE:118163] [RE:118621] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_3361326_c2_403
94
3866
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_33673776_c2_435
95
3867
297
98
312
6.4e-28





Description







gp:[GI:g4193373] [LN:AF072894] [AC:AF072894] [PN:ribosomal protein L31]


[GN:rpmE] [OR:Listeria monocytogenes] [DB:genpept-bct2] [DE:Listeria


monocytogenes 4b1 putative transcription terminator Rho(rho) gene, partial


cds; and wall teichoic acid glycosylationprotein GtcA (gtcA) and ribosomal


protein L31 (rpmE) genes, complete cds.] [LE:848] [RE:1093] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_33751260_c1_372
96
3868
471
156
448
2.5e-42





Description







pir:[LN:D70065] [AC:D70065] [PN:(3R)-hydroxymyristoyl-[acyl carrier


protein] dehydratase, ywpB] [GN:ywpB] [CL:(3R)-hydroxymyristoyl-[acyl


carrier protein] dehydratase] [OR:Bacillus subtilis] [EC:4.2.1.-] [DB:pir2]


>gp:[GI:e1184543:g2636162] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywpB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:similar to


hydroxymyristoyl-(acyl carrier protein)] [LE:145724] [RE:146122]


[DI:complement] >gp:[GI:e289141:g1763703] [LN:BSZ83337] [AC:Z83337]


[GN:ywpB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis mbl,


flh[O,P], rapD, ywp(B, C, D, E, F, G, H, I, J] and ywqAgenes.] [NT:similar to


hydroxymyristoyl-(acyl carrier protein)] [LE:3199] [RE:3597] [DI:direct]


>gp:[GI:e1184543:g2636162] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywpB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [NT:similar to


hydroxymyristoyl-(acyl carrier protein)] [LE:145724] [RE:146122]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_33870312_c3_522
97
3869
792
263
1213
2.1e-123





Description







gp:[GI:e279935:g1934991] [LN:SASIGFACB] [AC:Y07645] [PN:sigma factor B]


[GN:sigB] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus sigB


gene.] [LE:2674] [RE:3444] [DI:direct] >gp:[GI:e285000:g1729797]


[LN:SAUSIGB] [AC:Y09929] [PN:sigma-B] [GN:sigB] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus rsbU, rsbV, rsbW & sigB genes.] [LE:2687]


[RE:3457] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34062928_c3_521
98
3870
1083
360
1321
7.7e-135





Description







gp:[GI:e1340261:g3850851] [LN:SAU16431] [AC:Y16431] [PN:alr protein]


[GN:alr] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus dpj, alr genes, partial kdpC gene and 4ORF's.] [LE:3400] [RE:4548]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34181277_c2_461
99
3871
501
166
299
1.5e-26





Description







gp:[GI:e1340257:g3850847] [LN:SAU16431] [AC:Y16431] [PN:hypothetical


protein] [GN:ORF2] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus dpj, air genes, partial kdpC gene and 4ORF's.]


[LE:438] [RE:917] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34187702_c2_407
100
3872
936
311
1173
3.7e-119





Description







gp:[GI:e1352472:g3892894] [LN:SAARGFEMD] [AC:Y15477] [PN:hypothetical


protein] [GN:orf2] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus argI, glmM genes and ORF1 and ORF2.] [LE:2009]


[RE:2941] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34197275_f2_176
101
3873
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34250327_c1_396
102
3874
363
120
540
4.5e-52





Description







gp:[GI:e279931:g1934987] [LN:SASIGFACB] [AC:Y07645] [GN:ORF1]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus sigB gene.]


[LE:72] [RE:434] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34589010_c1_348
103
3875
246
81





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34611067_f3_302
104
3876
540
179
145
3.2e-10





Description







sp:[LN:YWJG_BACSU] [AC:P06629] [GN:YWJG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 19.1 KD PROTEIN IN SPO0F-PYRG INTERGENIC REGION (ORFS)]


[SP:P066291] [DB:swissprot] >pir:[LN:I40471] [AC:I40471:S55424:E70060]


[PN:hypothetical protein ywjG:spoOF protein] [GN:ywjG:spoOF] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g853763] [LN:BSDNA320D] [AC:Z49782] [GN:ywjG]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis chromosomal DNA


(region 320–321 degrees).] [SP:P06629] [LE:11169] [RE:11690] [DI:complement]


>gp:[GI:g401771] [LN:BSSPOO] [AC:V00105:J01549] [GN:spoOF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis gene required at an early


stage of sporulation. (gene code spoOF).] [SP:P06629] [LE:541] [RE:1062]


[DI:direct] >gp:[GI:e1184620:g2636239] [LN:BSUB0019] [AC:Z99122:AL009126]


[GN:ywjG] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091 to 3809700.)


[SP:P06629] [LE:212053] [RE:212574] [DI:direct] >gp:[GI:e1186215:g2636251]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywjG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401 to 4010550.] [SP:P066291 [LE:10743] [RE:11264]


[DI:direct] >gp:[GI:e1184620:g2636239] [LN:BSUB0019] [AC:Z99122:AL009126]


[GN:ywjG] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091 to 3809700.]


[SP:P06629] [LE:212053] [RE:212574] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34615700_f2_193
105
3877
819
272
155
2.8e-08





Description







gp:[GI:g1293846] [LN:CELC42D8] [AC:U56966] [GN:C42D8.3] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain = Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid C42D8.] [NT:coded for by C. elegans cDNA


yk30b3.5; coded for by] [LE:8907:9377:9844:10820] [RE:9056:9564:10206:10976]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_34646926_f2_206
106
3878
732
243
585
7.6e-57





Description







sp:[LN:DEOD_ACTPL] [AC:P94164] [GN:DEOD] [OR:ACTINOBACILLUS


PLEUROPNEUMONIAE] [SR:,HAEMOPHILUS PLEUROPNEUMONIAE] [EC:2.4.2.1] [DE:(PNP)]


[SP:P94164] [DB:swissprot] >gp:[GI:g1732037] [LN:APU55016] [AC:U55016]


[PN:purine nucleoside phosphorylase] [GN:deoD] [FN:cleavage of guanosine or


inosine to respective] [OR:Actinobacillus pleuropneumoniae]


[DB:genpept-bct1] [EC:2.4.2.1] [DE:Actinobacillus pleuropneumoniae


heat-shock 10 protein GroES (mopB), heat-shock 60 protein GroEL (mopA),


purine nucleoside phosphorylase(deoD) genes, complete cds, alcohol


dehydrogenase (adhE) gene, partial cds.] [LE:176] [RE:898] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_35354656_f1_108
107
3879
228
75





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_35647783_f1_103
108
3880
690
229
181
4.9e-14





Description







pir:[LN:F71082] [AC:F71082] [PN:hypothetical protein PH0924] [GN:PH0924]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030963:g3257337]


[LN:AP000004]


[AC:AP000004:AB009494:AB009495:AB009496:AB009497:AB009498:AB009499]


[PN:128aa long hypothetical protein] [GN:PH0924] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 777001–994000 nt. position(4/7).] [LE:55768]


[RE:56154] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_36128785_c1_369
109
3881
888
295
796
3.3e-79





Description







sp:[LN:ATPG_BACME] [AC:P20602] [GN:ATPG] [OR:BACILLUS MEGATERIUM]


[EC:3.6.1.34] [DE:ATP SYNTHASE GAMMA CHAIN,] [SP:P20602] [DB:swissprot]


>pir:[LN:G31482] [AC:G31482] [PN:H+-transporting ATP synthase, gamma chain]


[CL:H+-transporting ATP synthase gamma chain] [OR:Bacillus megaterium]


[EC:3.6.1.34] [DB:pir2] >gp:[GI:g142560] [LN:BACATPA]


[AC:M20255:J04455:Ml8352:M23924] [PN:ATP synthase gamma subunit]


[OR:Bacillus megaterium] [SR:B. megaterium (QM B1551) DNA, clones pWSB100,


pCAH1.3, and pWPC208] [DB:genpept-bct1] [DE:B. megaterium ATP synthase


i, a, c, b, delta, alpha, gamma, beta and epsilon subunit genes, complete cds, and


ORF.] [LE:4467] [RE:5324] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_36225052_c3_502
110
3882
234
77
270
1.8e-23





Description







pir:[LN:I39786] [AC:I39786] [PN:H+-transporting ATP synthase, C chain]


[GN:atpE] [CL:H+-transporting ATP synthase lipid-binding protein]


[OR:Bacillus firmus] [EC:3.6.1.34] [DB:pir2] >gp:[GI:g142570]


[LN:BACATPSYNB] [AC:M84713] [PN:ATP synthase c subunit] [GN:atpE] [FN:proton


translocation] [OR:Bacillus firmus] [SR:Bacillus firmus DNA]


[DB:genpept-bct1] [DE:Bacillus firmus ATP synthase a and c subunit genes, 3′


end and complete cds.] [NT:putative] [LE:299] [RE:511] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_36363432_f1_85
111
3883
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4039012_c3_514
112
3884
168
55
59
0.036





Description







gp:[GI:g5410434] [LN:AF134170] [AC:AF134170] [PN:gag] [OR:Dictyostelium


discoideum] [DB:genpept] [DE:Dictyostelium discoideum retrotransposon


TRE3-B, complete sequence.] [LE:139] [RE:1347] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4063202_c3_499
113
3885
1239
412
1563
1.8e-160





Description







sp:[LN:GLYA_BACSU] [AC:P39148] [GN:GLYA:GLYC:IPC-34D] [OR:BACILLUS SUBTILIS]


[EC:2.1.2.1] [DE:(SHMT)] [SP:P39148] [DB:swissprot] >pir:[LN:I40483]


[AC:I40483:H69635:S49363] [PN:glycine hydroxymethyltransferase, glyA:serine


hydroxymethyltransferase] [GN:glyA:glyC] [CL:glycine


hydroxymethyltransferase] [OR:Bacillus subtilis] [EC:2.1.2.1] [DB:pir2]


>gp:[GI:g556886] [LN:BSSPORUPP] [AC:Z38002] [PN:serine


hydroxymethyltransferase] [GN:glyC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis spoII-R, glyc and upp genes.] [SP:P39148] [LE:5499] [RE:6746]


[DI:direct] >gp:[GI:e1184596:g2636215] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:serine hydroxymethyltransferase] [GN:glyA] [FN:glycine/serine/threonine


metabolism] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.1.2.1]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [NT:alternate gene name:glyc, ipc-34d] [SP:P39148] [LE:191155]


[RE:192402] [DI:complement] >gp:[GI:e1184596:g2636215] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:serine hydroxymethyltransferase] [GN:glyA]


[FN:glycine/serine/threonine metabolism] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.1.2.1] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:glyc, ipc-34d] [SP:P39148]


[LE:191155] [RE:192402] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_40712_f2_210
114
3886
216
71





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4072135_c3_490
115
3887
1467
488
870
4.8e-87





Description







pir:[LN:E70961] [AC:E70961] [PN:hypothetical protein Rv0223c] [GN:Rv0223c]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e304956:g1871596]


[LN:MTCY8D5] [AC:Z92669:AL123456] [PN:hypothetical protein Rv0223c]


[GN:Rv0223c] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 12/162.]


[NT:Rv0223c, (MTCY08D5.18), aldehyde dehydrogenase,] [LE:18979] [RE:20442]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4079511_f1_3
116
3888
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_409556_f1_111
117
3889
135
44
112
2.5e-06





Description







pir:[LN:D71245] [AC:D71245] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4178218_c1_353
118
3890
675
224
81
0.0066





Description







gp:[GI:g1131502] [LN:PBU42580] [AC:U42580:U17055:U32570] [GN:A158L]


[OR:Paramecium bursaria Chlorella virus 1] [DB:genpept-vrl] [DE:Paramecium


bursaria Chlorella virus 1, complete genome.] [LE:80789] [RE:81103] [DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4346926_c2_450
119
3891
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4728558_c2_409
120
3892
1860
619
2088
4.1e-216





Description







pir:[LN:B69633] [AC:B69633] [PN:L-glutamine-D-fructose-6-phosphate


amidotransferase glmS] [GN:glmS] [CL:glutamine- -fructose-6-phosphate


aminotransferase (isomerizing)] [OR:Bacillus subtilis] [DB:pir2]


>gp:LGI:d1034037:g3599596] [LN:AB006424] [AC:AR006424]


[PN:L-GLUTAMINE-D-FRUCTOSE-6-PHOSPHATE AMIDO] [GN:gcaA] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 70 kb region between 17 and 23 degree.]


[LE:3246] [RE:5048] [DI:direct] >gp:[GI:g726480] [LN:BSU21932]


[AC:U21932:D21198] [PN:L-glutamine-D-fructose-6-phosphate] [GN:gcaA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


L-glutamine-D-fructose-6-phosphateamidotransferase (gcaA) gene, complete


cds.] [LE:312] [RE:2114] [DI:direct] >gp:[GI:e1182111:g2632445]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:L-glutamine-D-fructose-6-phosphate]


[GN:glmS] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.6.1.16]


[DE:Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080.]


[NT:alternate gene name:gcaA, ybxD] [SP:P39754] [LE:200263] [RE:202065]


[DI:direct] >gp:[GI:e1182129:g2632463] [LN:BSUB0002] [AC:Z99105:AL009126]


[PN:L-glutamine-D-fructose-6-phosphate] [GN:glmS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.6.1.16] [DE:Bacillus subtilis complete genome


(section 2 of 21): from 194651 to 415810.] [NT:alternate gene name:gcaA,


ybxD] [SP:P39754] [LE:5613] [RE:7415] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_476567_c1_355
121
3893
567
188
292
8.5e-26





Description







sp:[LN:RPOE_BACSU] [AC:P12464] [GN:RPOE] [OR:BACILLUS SUBTILIS] [EC:2.7.7.6]


[DE:DNA-DIRECTED RNA POLYMERASE DELTA SUBUNIT,] [SP:P12464] [DB:swissprot]


>pir:[LN:JT0302] [AC:JT0302:H32354:S55422:H69698] [PN:DNA-directed RNA


polymerase, delta chain rpoE] [GN:rpoE] [CL:DNA-directed RNA polymerase


delta chain] [OR:Bacillus subtilis] [EC:2.7.7.6] [DB:pir1] >gp:[GI:g143456]


[LN:BACRPOE] [AC:M21677] [OR:Bacillus subtilis] [SR:B. subtilis (strain 168)


DNA, clone mML11] [DB:genpept-bct1] [DE:B. subtilis RNA polymerase delta


subunit (rpoE) gene, complete cds.] [NT:rpoE protein (ttg start codon)]


[LE:101] [RE:622] [DI:direct] >gp:[GI:g853761] [LN:BSDNA320D] [AC:Z49782]


[PN:RNA polymerase delta subunit] [GN:rpoE] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 320–321 degrees).]


[NT:ttg start codon] [SP:P12464] [LE:8717] [RE:9238] [DI:direct]


>gp:[GI:e1186217:g2636253] [LN:BSUB0020] [AC:Z99123:AL009126] [PN:RNA


polymerase (delta subunit)] [GN:rpoE] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.7.6] [DE:Bacillus subtilis complete genome


(section 20 of 21): from 3798401 to 4010550.] [SP:P12464] [LE:13195]


[RE:13716] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4869213_c3_519
122
3894
1521
506
811
3.4e-128





Description







gp:[GI:e1340258:g3850848] [LN:SAU16431] [AC:Y16431] [PN:hypothetical


protein] [GN:ORF3] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus dpj, air genes, partial kdpC gene and 4ORF's.]


[LE:910] [RE:2493] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4881262_f3_293
123
3895
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4881302_f2_191
124
3896
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4901712_c1_370
125
3897
1428
475
1999
1.1e-206





Description







sp:[LN:ATPB_BACSU] [AC:P37809] [GN:ATPD] [OR:BACILLUS SUBTILIS]


[EC:3.6.1.34] [DE:(VEG31)] [SP:P37809] [DB:swissprot] >pir:[LN:140368]


[AC:I40368:H69591:S39256] [PN:H+-transporting ATP synthase, beta chain


(atpD)] [GN:atpD] [CL:H+-transporting ATP synthase alpha chain:


H+-transporting ATP synthase alpha chain homology] [OR:Bacillus subtilis]


[EC:3.6.1.34] [DB:pir2] >gp:[GI:g433991] [LN:BSATPASE] [AC:Z28592] [PN:ATP


synthase subunit beta] [GN:atpD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis (168) atpase genes for ATP synthase subunits i, a, c ,b,


delta, alpha, gamma, beta, epsilon.] [SP:P37809] [LE:5520] [RE:6941]


[DI:direct] >gp:[GI:e1184587:g2636206] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:ATP synthase (subunit beta)] [GN:atpD] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:3.6.1.34] [DE:Bacillus subtilis complete genome


(section 19 of 21): from 3597091 to 3809700.] [SP:P37809] [LE:183456]


[RE:184877] [DI:complement] gp:[GI:e1184587:g2636206] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ATP synthase (subunit beta)] [GN:atpD] [OR:Bacillus


subtilis] [DB:genpept] [EC:3.6.1.34] [DE:Bacillus subtilis complete genome


(section 19 of 21): from 3597091 to 3809700.] [SP:P37809] [LE:183456]


[RE:184877] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_4962802_c2_421
126
3898
1305
434
1591
1.9e-163





Description







gp:[GI:g4336793] [LN:AF105341] [AC:AF105341] [PN:pyrimidine nucleoside


phosphorylase] [GN:pdp1] [OR:Listeria monocytogenes] [DB:genpept-bct2]


LDE:Listeria monocytogenes threonine dehydratase (thd1) gene, partial cds;


alpha acetolactate decarboxylase gene, complete cds; and pyrimidine


nucleoside phosphorylase (pdp1) gene, partial cds.] [LE:1749] [RE:>3010]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_S078177_c1_365
127
3899
1062
353
1169
9.9e-119





Description







gp:[GI:g1773355] [LN:5AU81973] [AC:U81973] [PN:Cap5P] [GN:cap5P]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


capsule gene cluster Cap5A through Cap5Pgenes, complete cds.] [NT:putative


N-acetylglucosamine 2-epimerase] [LE:157691] [RE:16944] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_5111502_c2_454
128
3900
924
307
417
4.8e-39





Description







sp:[LN:YQJG_BACSU] [AC:P54544] [GN:YQJG] [OR:BACILLUS SUBTILIS]


[DE:PRECURSOR] [SP:P54544] [DB:swissprot] >pir:[LN:G69963] [AC:G69963]


[PN:lipoprotein SpoIIIJ-like homolog yqjG] [GN:yqjG] [CL:stage III


sporulation protein:stage III sporulation protein homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013293:g1303958] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqjG] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:234919] [RE:235746]


[DI:complement] >gp:[GI:e1185657:g2634823] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to lipoprotein SpoIIIJ-like]


[SP:P54544] [LE:87873] [RE:88700] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_5131927_f1_93
129
3901
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_5318785_c1_395
130
3902
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_5319213_c2_442
131
3903
417
138
312
6.4e-28





Description







sp:[LN:ATPE_BACSU] [AC:P37812] [GN:ATPC] [OR:BACILLUS SUBTILIS]


[EC:3.6.1.34] [DE:ATP SYNTHASE EPSILON CHAIN,] [SP:P37812] [DB:swissprot]


>pir:[LN:I40369] [AC:I40369:G69591:S39257] [PN:H+-transporting ATP


synthase, epsilon chain (atpC)] [GN:atpC] [CL:H+-transporting ATP synthase


epsilon chain] [OR:Bacillus subtilis] [EC:3.6.1.34] [DB:pir2]


>gp:[GI:g433992] [LN:BSATPASE] [AC:Z28592] [PN:ATP synthase subunit epsilon]


[GN:atpC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis (168)


atpase genes for ATP synthase subunits i, a, c, b, delta, alpha, gamma,


beta, epsilon.] [SP:P37812] [LE:6965] [RE:7363] [DI:direct]


>gp:[GI:e1184586:g2636205] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:ATP


synthase (subunit epsilon)] [GN:atpC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:3.6.1.34] [DE:Bacillus subtilis complete genome


(section 19 of 21): from 3597091 to 3809700.] [SP:P37812] [LE:183034]


[RE:183432] [DI:complement] >gp:[GI:e1184586:g2636205] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ATP synthase (subunit epsilon)] [GN:atpC]


[OR:Bacillus subtilis] [DB:genpept] [EC:3.6.1.34] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [SP:P37812]


[LE:183034] [RE:183432] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_582760_c2_463
132
3904
207
68
150
9.5e-11





Description







gp:[GI:e1340262:g3850852] [LN:SAU16431] [AC:Y16431] [PN:hypothetical


protein] [GN:ORF7] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus dpj, alr genes, partial kdpC gene and 4ORF's.]


[LE:4633] [RE:>4735] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_5895301_c1_378
133
3905
948
315
603
9.4e-59





Description







sp:[LN:THID_HAEIN] [AC:P44697] [GN:THID:H10416] [OR:HAEMOPHILUS INFLUENZAE]


[EC:2.7.4.7] [DE:(HMP-P KINASE)] [SP:P44697] [DB:swissprotj >pir:[LN:I64151]


[AC:I64151][PN:hypothetical protein HI0416] [CL:phosphomethylpyrimidine


phosphate kinase] [OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g1573390]


[LN:U32725] [AC:U32725:L42023] [PN:phosphomethylpyrimidine kinase (thiD)]


[GN:HI0416] [OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus


influenzae Rd section 40 of 163 of the complete genome.] [NT:similar to


GB:AE000511 PID:2313975 percent] [LE:1472] [RE:2281] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6442192_f2_181
134
3906
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6454635_c2_431
135
3907
912
303
1173
3.7e-119





Description







sp:[LN:ALF1_BACSU] [AC:P132431] [GN:FBAA:FBA:FBA1:TSR] [OR:BACILLUS SUBTILIS]


[EC:4.1.2.13] [DE:PROBABLE FRUCTOSE-BISPHOSPHATE ALDOLASE 1,] [SP:P13243]


[DB:swissprot] >pir:[LN:D32354] [AC:S55426:D32354:E32354:D41835:B6962]


[PN:fructose-bisphosphate aldolase, fbaA:30K phosphoprotein


orfY-tsr:fructose-1,6-bisphosphate aldolase] [GN:fbaA]


[CL:fructose-bisphosphate aldolase II] [OR:Bacillus subtilis] [EC:4.1.2.13]


[DB:pir1] >gp:[GI:g460911] [LN:BACSPO0FA] [AC:M22039]


[PN:fructose-bisphosphate aldolase] [GN:orfY-tsr] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strains JH642 and UOT0550) DNA] [DB:genpept-bct1]


[EC:4.1.2.13] [DE:Bacillus subtillis spo0F, CTP synthetase (ctrA),


and fructose-bisphosphate aldolase (orfY-tsr) genes, complete cds.] [LE:32701


[RE:4127] [DI:direct] >gp:[GI:g853765] [LN:BSDNA320D] [AC:Z49782]


[PN:fructose biphosphate aldolase] [GN:tsr] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 320–321 degrees).]


[SP:P13243] [LE:12411] [RE:13268] [DI:direct] >gp:[GI:e1184618:g2636237]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:fructose-1,6-bisphosphate aldolase]


[GN:fbaA] [FN:glycolysis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.2.13] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:tsr, fba] [SP:P13243]


[LE:210475] [RE:211332] [DI:complement] >gp:[GI:e1186213:g2636249]


[LN:BSUB0020] [AC:Z99123:AL009126] [PN:fructose-1,6-bisphosphate aldolase]


[GN:fbaA] [FN:glycolysis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.2.13] [DE:Bacillus subtilis complete genome (section 20 of 21): from


3798401 to 4010550.] [NT:alternate gene name:tsr, fba] [SP:P13243] [LE:9165]


[RE:10022] [DI:complement] >gp:[GI:e1184618:g2636237] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:fructose-1,6-bisphosphate aldolase] [GN:fbaA]


[FN:glycolysis] [OR:Bacillus subtilis] [DB:genpept] [EC:4.1.2.13]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [NT:alternate gene name:tsr, fba] [SP:P13243] [LE:210475]


[RE:211332] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6645391_c1_342
136
3908
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6681316_f2_197
137
3909
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6721877_f2_194
138
3910
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_6906576_c1_371
139
3911
1296
431
1429
2.8e-146





Description







pir:[LN:A69662] [AC:A69662 ] [PN:UDP-N-acetylglucosamine


1-carboxyvinyltransferase murA] [GN:murA] [CL:UDP-N-acetylglucosamine


1-carboxyvinyltransferase MurZ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e276830:g1648861] [LN:BSATPC] [AC:Z81356]


[PN:UDP-N-acetylglucosamine] [GN:murA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis atpC gene.] [LE:1943] [RE:3253] [DI:direct]


>gp:[GI:e1184582:g2636201] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:UDP-N-acetylglucosamine] [GN:murA] [FN:peptidoglycan biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.5.1.7] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [LE:179914]


[RE:181224] [DI:complement] >gp:[GI:e1184582:g2636201] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-N-acetylglucosamine] [GN:murA]


[FN:peptidoglycan biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.5.1.7] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [LE:179914] [RE:181224] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_7240675_c2_460
140
3912
1374
457
976
2.8e-98





Description







sp:[LN:MURF_BACSU] [AC:P96613] [GN:MURF] [OR:BACILLUS SUBTILIS]


[EC:6.3.2.15] [DE:(D-ALANYL-D-ALANINE-ADDING ENZYME)] [SP:P96613]


[DB:swissprot] >pir:[LN:F69662] [AC:F69662]


[PN:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-al murF]


[GN:murF] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020047:g1881267]


[LN:AB001488] [AC:AB001488] [GN:ydbQ] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the region between 35 and 47 degree.]


[NT:PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,] [LE:42447] [RE:43820]


[DI:direct] >gp:[GI:e1182423:g2632757] [LN:BSUB0003] [AC:Z99106:AL009126]


[PN:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-] [GN:murF] [FN:peptidoglycan


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.2.151


[DE:Bacillus subtilis complete genome (section 3 of 21): from 402751


to 611850.] [NT:alternate gene name:ydbQ] [SP:P96613] [LE:106191]


[RE:107564] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_7292200_c1_351
141
3913
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_9784625_c3_507
142
3914
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000979_9800787_f2_216
143
3925
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_10006507_f3_164
144
3916
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_10736002_c1_211
145
3917
1521
506
2313
5.9e-240





Description







sp:[LN:SYK_STAAU] [AC:Q53638] [GN:LYSS] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.1.1.6] [DE:LYSYL-TRNA SYNTHETASE, (LYSINE- -TRNA LIGASE) (LYSRS)]


[SP:Q53638] [DB:swissprot] >gp:[GI:g567884] [LN:STA5SRR] [AC:L36472]


[PN:lysyl-tRNA synthetase] [OR:Staphylococcus aureus] [SR:Staphylococcus


aureus (clone library:ATCC 12600) DNA] [DB:genpept-bct1] [DE:Staphylococcus


aureus lysyl-tRNA sythetase gene, complete cds, transfer RNA (tRNA) genes, 5S


ribosomal RNA (5S rRNA) gene, 16S ribosomal RNA (16S rRNA) gene, 23S


ribosomal RNA (23S rRNA) gene.] [LE:176] [RE:1663] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_11210316_c1_203
146
3918
195
64
166
1.9e-12





Description







sp:[LN:YABO_BACSU] [AC:P37557] [GN:YABO] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 9.7 KD PROTEIN IN MFD-DIVIC INTERGENIC REGION] [SP:P37557]


[DB:swissprot] >pir:[LN:S66089] [AC:S66089:F69739] [PN:conserved


hypothetical protein yabO] [GN:yabO] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005836:g467448] [LN:BAC180K] [AC:D26185] [PN:unknownil [OR:Bacillus


subtilis] [SR:Bacillus subtilis(sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:131477] [RE:131737] [DI:direct] >gp:[GI:e1181992:g2632326]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabO] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37557]


[LE:67875] [RE:68135] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_1292767_c3_243
147
3919
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_12929625_c1_186
148
3920
810
269
819
1.2e-81





Description







sp:[LN:YAAT_BACSU] [AC:P37541] [GN:YAAT] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.2 KD PROTEIN IN XPAC-ABRB INTERGENIC REGION] [SP:P37541]


[DB:swissprot] >pir:[LN:S66062] [AC:S66062:A69738] [PN:signal peptidase II


homolog yaaT] [GN:yaaT] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005810:g467422] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:105257] [RE:106084] [DI:direct] >gp:[GI:e1181965:g2632299]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yaaT] [FN:unknown) (OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to signal peptidase II] [SP:P37541]


[LE:41655] [RE:42482] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_13759688_c1_184
149
3921
615
204
527
1.1e-50





Description







sp:(LN:KTHY_BACSU] [AC:P37537] [GN:TMK] [OR:BACILLUS SUBTILIS] [EC:2.7.4.9]


[DE:THYMIDYLATE KINASE, (DTMP KINASE)] [SP:P37537] [DB:swissprot]


>pir:[LN:S66058] [AC:S66058:D69724] [PN:thymidylate kinase tmk] [GN:tmk]


[CL:dTMP kinase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005806:g467418]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:102759]


[RE:103397] [DI:direct] >gp:[GI:e1181961:g2632295] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:thymidylate kinase] [GN:tmk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.4.9] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to 213080.] [NT:alternate gene name:yaaP]


[SP:P37537] [LE:39157] [RE:39795] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_14460015_f1_55
150
3922
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_16484577_f2_119
151
3923
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_16522641_f2_76
152
3924
597
198
207
1.9e-16





Description







gp:[GI:d1045277:g5106180] [LN:AP000064] [AC:AP000064] [PN:353aa long


hypothetical protein] [GN:APE2475] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 7/7.] [NT:similar to OWL:AP00000385 percent identity:66.667]


[LE:151512] [RE:152573] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_16594202_c2_237
153
3925
480
159
383
1.9e-35





Description







sp:[LN:HPPK_BACSU] [AC:P29252] [GN:FOLK] [OR:BACILLUS SUBTILIS] [EC:2.7.6.3]


[DE:(HPPK) (6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE) (PPPK)]


[SP:P29252] [DB:swissprot] >pir:[LN:S66109] [AC:S66109:F37854:F69626]


[PN:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine


pyrophosphokinase,:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase:7,


8-dihydro-6-hydroxymethylpterin pyrophosphokinase] [GM:folK]


[CL:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine


pyrophosphokinase:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine


pyrophosphokinase homology] [OR:Bacillus subtilis] [EC:2.7.6.3] [DB:pir2]


>gp:[GI:d1005856:g467468] [LM:BAC180K] [AC:D26185]


[PM:7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin] [GM:folk] [OR:Bacillus


subtilis] [SR:Bacillus subtilis(sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:150545] [RE:151048] [DI:direct] >gp:[GI:e1182012:g2632346]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:7,8-dihydro-6-hydroxymethylpterin]


[GM:folK] [FM:dihydrofolate biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.6.3] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to 213080.] [LE:86943] [RE:87446] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_190875_f1_6
154
3926
210
69
70
0.028





Description







pir:[LN:S69873] [AC:S69873] [PM:hypothetical protein YML009w-a]


[OR:Saccharomyces cerevisiae] [DB:pir2] [MP:13L]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_194142_c1_194
155
3927
1386
461
1339
9.6e-137





Description







pir:[LN:S66080] [AC:S66080:I40018:C69629:S05371:S18903]


[PN UDP-N-acetylglucosamine pyrophosphorylase gcaD cell division protein


tms26:tms protein] [GN:gcaD:tms26] [CL:N-acetylglucosamine-1-phosphate


uridyltransferase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005827:g467439] [LN:BAC180K] [AC:D26185] [PN:temperature sensitive


cell division] [GN:tms26] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA) [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:119952] [RE:121322]


[DI:direct] >gp:[GI:e1181983:g2632317] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:UDP-N-acetylglucosamine pyrophosphorylase] [GN:gcaD] [FN peptidoglycan


and lipopolysaccharide] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.7.7.23] [DE:Bacillus subtilis complete genome (section 1 of 21): from


1 to 213080.] [NT:alternate gene name:tms, tms26] [SP:P14192] [LE:56350]


[RE:57720] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_20335927_f2_69
156
3928
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_211687_c3_261
157
3928
897
298
985
3.1e-99





Description







sp:[LN:YACC_BACSU] [AC:P37565] [GN:YACC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.8 KD PROTEIN IN FTSH-CYSK INTERGENIC REGION] [SP:P37565]


[DB:swissprot] >pir:[LN:S66101] [AC:S66101:F69740] [PN:conserved


hypothetical protein yacC] [GN:yacC] [CL:conserved hypothetical protein


sll19881] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005848:g467460]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:143479]


[RE:144354] [DI:direct] >gp:[GI:e1182004:g2632338] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:yacC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37565]


[LE:79877] [RE:80752] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_21579131_f3_157
158
3980
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_22694002_c3_258
159
3931
546
181
544
1.7e-52





Description







sp:[LN:HPRT_BACSU] [AC:P37472] [GN:HPRT:HPT] [OR:BACILLUS SUBTILIS]


[EC:2.4.2.8] [DE:(HGPRTASE)] [SP:P37472] [DB:swissprot] >pir:[LN:S66098]


[AC:S66098:E69642] [PN:hypoxanthine phosphoribosyltransferase,


hprT:hypoxanthine-guanine phosphoribosyltransferase hprT] [GN:hprT]


[CL:hypoxanthine phosphoribosyltransferase] [OR:Bacillus subtilis]


[EC:2.4.2.8] [DB:pir2] >gp:[GI:d1005845:g467457] [LN:BAC180K] [AC:D26185]


[PN:hypoxanthine-guanine phosphoribosyltransferase] [GN:hprt] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:139944] [RE:140486] [DI:direct] >gp:[GI:e1182001:g2632335]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:hypoxanthine-guanine


phosphoribosyltransferase] [GN:hprT] [FN:purine salvage] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.4.2.8] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [SP:P37472] [LE:76342]


[RE:76884] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_23445130_c1_207
160
3932
417
138
134
4.1e-08





Description







gp:[GI:e1182000:g2632334] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:yacA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [NT:similar to


cell-cycle protein] [LE:74927] [RE:76345] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_23601702_c1_190
161
3933
891
296
919
3.1e-92





Description







sp:[LN:KSGA_BACSU] [AC:P37468] [GN:KSGA] [OR:BACILLUS SUBTILIS] [EC:2.1.1.-]


[DE:DIMETHYLTRANSFERASE)] [SP:P37468] [DB:swissprot] >pir:[LN:S66071]


[AC:S66071:A69649] [PN:dimethyladenosine transferase ksgA:high level


kasgamycin resistance protein ksgA] [GN:ksgA] [CL:rRNA


(adenine-N6-)-methyltransferase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005819:g467431] [LN:BAC180K] [AC:D26185] [PN:high level kasgamycin


resistance] [GN:ksgA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:114240] [RE:115118]


[DI:direct] >gp:[GI:e1181975:g2632309] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:dimethyladenosine transferase] [GN:ksgA] [FN:high level kasugamycin


resistance] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.1.1.-]


[DE:Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080.]


[SP:P37468] [LE:50638] [RE:51516] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_23605438_c2_238
162
3934
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_2361327_c3_250
163
3935
966
321
1225
1.1e-124





Description







gp:[GI:g2289093] [LN:CAU76387] [AC:U76387] [PN:PRPP synthetase] [GN:prs]


[OR:Corynebacterium ammoniagenes] [DB:genpept-bct1] [EC:2.7.6.1]


[DE:Corynebacterium ammoniagenes N-acetyl glucoseamine


1-phosphateuridyltransferase (glmU) gene, partial cds, and


PRPP-synthetase(prs) gene, complete cds.] [LE:321] [RE:1274] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_23642135_c1_185
164
3936
357
118
389
4.5e-36





Description







sp:[LN:YAAQ_BACSU] [AC:P37538] [GN:YAAQ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 12.0 KD PROTEIN IN XPAC-ABRB INTERGENIC REGION] [SP:P37538]


[DB:swissprot] >pir:[LN:S66059] [AC:S66059:G69737] [PN:conserved


hypothetical protein yaaQ] [GN:yaaQ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005807:g467419] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:103471] [RE:103800] [DI:direct] >gp:[GI:e1181962:g2632296]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yaaQ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37538]


[LE:39869] [RE:40198] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_23860952_c1_206
165
3937
882
293
304
4.5e-27





Description







gp:[GI:g4981097] [LN:AE001733] [AC:AE001733:AE000512] [PN:conserved


hypothetical protein] [GN:TM0579] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 45 of 136 of the complete genome.]


[NT:similar to GB:AE000657 percent identity:59.32;] [LE:230] [RE:1474]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24350952_f3_120
166
3938
132
43
72
0.017





Description







pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP000001]





[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24647936_c3_256
167
3939
408
135
172
4.4e-13





Description







gp:[GI:g4090866] [LN:AF023181] [AC:AF023181] [PN:DivIC homolog] [GN:divL]


[OR:Listeria monocytogenes] [DB:genpept-bct2] [DE:Listeria monocytogenes


transcription-repair coupling factor (mfdL), low temperature requirement B


protein (ltrB), and DivIC homolog(divL) genes, complete cds.] [LE:6077]


[RE:6463] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24649092_c2_236
168
3940
378
125
351
4.7e-32





Description







sp:[LN:FOLB_STAHA] [AC:Q59920] [GN:FOLB:FOLQ] [OR:STAPHYLOCOCCUS


HAEMOLYTICUS] [EC:4.1.2.25] [DE:DIHYDRONEOPTERIN ALDOLASE, (DHNA)


(FRAGMENT)] [SP:Q59920] [DB:swissprot] >gp:[GI:g1118003] [LN:SHU40768]


[AC:U40768] [PN:dihydroneopterin aldolase] [GN:folQ] [OR:Staphylococcus


haemolyticus] [DB:genpept-bct2] [EC:4.1.2.25] [DE:Staphylococcus


haemolyticus cysteine synthase A (cysK) and dihydroneopterin aldolase (folQ)


genes, partial cds, and dihydropteroate synthase (folP) gene, complete cds.]


[NT:DHNA] [LE:1467] [RE:>1724] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24663892_c3_251
169
3941
1881
626
1224
1.5e-124





Description







sp:[LN:MFD_BACSU] [AC:P37474] [GN:MFD] [OR:BACILLUS SUBTILIS]


[DE:TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF)] [SP:P37474] [DB:swissprot]


>pir:[LN:S66085] [AC:S66085:F69657] [PN:transcription-repair coupling


factor mfd] [GN:mfd] [CL:transcription-repair coupling protein:DEAD/H box


helicase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005832:g467444] [LN:BAC180K] [AC:D26185] [PN:transcription-repair


coupling factor] [GN:mfd] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:124030] [RE:127563]


[DI:direct] >gp:[GI:e1181988:g2632322] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:transcription-repair coupling factor] [GN:mfd] [FN:probably involved in


homologous DNA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [SP:P37474]


[LE:60428] [RE:63961] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24734661_f1_13
170
3942
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_24790916_c1_208
171
3943
2106
701
2133
6.9e-221





Description







sp:[LN:FTSH_BACSU] [AC:P37476] [GN:FTSH] [OR:BACILLUS SUBTILIS]


[EC:3.4.24.-] [DE:CELL DIVISION PROTEIN FTSH HOMOLOG,] [SP:P37476]


[DB:swissprot] >pir:[LN:E69627] [AC:E69627:566099] [PN:cell-division


protein/general stress protein ftsH:class III heat shock protein ftsH]


[GN:ftsH] [CL:cell division protein ftsH:FtsH/SEC18/CDC48-type ATP-binding


domain homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005846:g467458]


[LN:BAC180K] [AC:D26185] [PN:cell division protein] [GN:ftsH] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:140584] [RE:142497] [DI:direct] >gp:[GI:e1182002:g2632336]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:cell-division protein and general


stress protein] [GN:ftsH] [FN:involved in major cellular processes such as]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.4.24.-] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [LSP:P37476] [LE:76982]


[RE:78895] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_25662965_c1_195
172
3944
729
242
463
6.4e-44





Description







sp:[LN:CTC_BACSU] [AC:P14194] [GN:CTC] [OR:BACILLUS SUBTILIS] [DE:GENERAL


STRESS PROTEIN CTC] [SP:P14194] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_26210061_f2_99
173
3945
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_26839660_c3_246
174
3946
855
284
842
4.4e-84





Description







gp:[GI:e1386912:g4454322] [LN:SAU132803] [AC:AJ132803] [PN:hypothetical


protein] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus ORF1 and ORF2 (partial).] [NT:ORF2] [LE:1402] [RE:>2052] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_2928502_c3_262
175
3947
960
319
1166
2.1e-118





Description







sp:[LN:CYSK_BACSU] [AC:P37887] [GN:CYSK] [OR:BACILLUS SUBTILIS]


[EC:4.2.99.8] [DE:PROTEIN 11) (SOI11)] [SP:P37887] [DB:swissprot]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_29298162_f2_118
176
3948
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_29307187_c2_213
177
3949
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_31446881_c2_215
178
3950
351
116
194
2.1e-15





Description







sp:[LN:YABA_BACSU] [AC:P37542] [GN:YABA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 14.1 KD PROTEIN IN XPAC-ABRB INTERGENIC REGION] [SP:P37542]


[DB:swissprot] >pir:[LN:S66063] [AC:S66063:B69738] [PN:hypothetical protein


yabA] [GN:yabA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005811:g467423]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:106099]


[RE:106458] [DI:direct] >gp:[GI:e1181966:g2632300] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:yabA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [SP:P37542] [LE:42497] [RE:42856] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_32615811_f3_166
179
3951
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_33225017_c2_222
180
3952
867
288
792
8.8e-79





Description







sp:[LN:PURR_BACSU] [AC:P37551] [GN:PURR] [OR:BACILLUS SUBTILIS] [DE:PUR


OPERON REPRESSOR] [SP:P37551] [DB:swissprot] >pir:[LN:S66076]


[AC:S66076:D69685] [PN:transcription repressor of purine operon purR]


[GN:purR] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005824:g467436]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:118041]


[RE:118898] [DI:direct] >gp:[GI:e1181980:g2632314] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:transcriptional regulator] [GN:purR] [FN:negative


regulation of the purine operon] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 1 of 21): from 1 to 213080.]


[NT:alternate gene name:yabI] [SP:P37551] [LE:54439] [RE:55296] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_33313817_c1_192
181
3953
333
110
323
4.4e-29





Description







sp:[LN:SP5G_BACME] [AC:P28016] [GN:SPOVG] [OR:BACILLUS MEGATERIUM] [DE:STAGE


V SPORULATION PROTEIN G] [SP:P28016] [DB:swissprot] >pir:[LN:S18900]


[AC:S18900] [PN:spoVG protein] [CL:stage V sporulation protein spoVG]


[OR:Bacillus megaterium] [DB:pir2] >gp:[GI:g39656] [LN:BMSPOVG] [AC:X62377]


[GN:spoVG] [OR:Bacillus megaterium] [DB:genpept-bct1] [DE:B. megaterium spoVG


and tms genes.] [SP:P28016] [LE:31] [RE:321] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_34001510_c2_218
182
3954
798
265
916
6.4e-92





Description







sp:[LN:YABD_BACSU] [AC:P37545] [GN:YABD] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 29.2 KD PROTEIN IN METS-KSGA INTERGENIC REGION] [SP:P37545]


[DB:swissprot] >pir:[LN:S66068] [AC:S66068:E69738] [PN:conserved


hypothetical protein yabD] [GN:yabD] [CL:hypothetical protein HI0454]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005816:g4G7428] [LN:BAC180K]


[AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:111306] [RE:112073]


[DI:direct] >gp:[GI:e1181972:g2632306] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:yabD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [NT:similar to


hypothetical proteins] [SP:P37545] [LE:47704] [RE:48471] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_34428515_c1_191
183
3955
285
94
284
6.0e-25





Description







sp:[LN:VEG_BACSU] [AC:P37466] [GN:VEG] [OR:BACILLUS SUBTILIS] [DE:VEG


PROTEIN] [SP:P37466] [DB:swissprot] >pir:[LN:S66073] [AC:S66073:C69730]


[PN:hypothetical protein veg] [GN:veg] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005821:g467433] [LN:BAC180K] [AC:D26185] [PN:unknown] [GN:veg]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:116363] [RE:11.6623] [DI:direct]


>gp:[GI:e1181977:g2632311] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:veg]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [SP:P37466] [LE:52761]


[RE:53021] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_34571011_c3_252
184
3956
1608
535
1712
2.8e-176





Description







sp:[LN:MFD_BACSU] [AC:P37474] [GN:MFD] [OR:BACILLUS SUBTILIS]


[DE:TRANSCRIPTION-REPAIR COUPLING FACTOR (TRCF)] [SP:P37474] [DB:swissprot]


>pir:[LN:S66085] [AC:S66085:F69657] [PN:transcription-repair coupling


factor mfd] [GN:mfd] [CL:transcription-repair coupling protein:DEAD/H box


helicase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005832:g467444] [LN:BAC180K] [AC:D26185] [PN:transcription-repair


coupling factor] [GN:mfd] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:124030] [RE:127563]


[DI:direct] >gp:[GI:e1181988:g2632322] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:transcription-repair coupling factor] [GN:mfd] [FN:probably involved in


homologous DNA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [SP:P37474]


[LE:60428] [RE:63961] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_35260887_c1_193
185
3957
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_3553_c3_245
186
3958
972
323
382
2.5e-35





Description







sp:[LN:HOLB_BACSU] [AC:P37540] [GN:HOLB] [OR:BACILLUS SUBTILIS] [EC:2.7.7.7]


[DE:DNA POLYMERASE III, DELTA′ SUBUNIT,] [SP:P37540] [DB:swissprot]


>pir:[LN:S66061] [AC:S66061:C69642] [PN:DNA polymerase III (delta′ subunit)


holB:dnaH homolog holB] [GN:holB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005809:g467421] [LN:BAC180K] [AC:D26185] [PN:similar to B.


subtilis DnaH] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:104265] [RE:105254]


[DI:direct] >gp:[GI:e1181964:g2632298] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:DNA polymerase III (delta′ subunit)] [GN:holB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.7.7] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to 213080.] [NT:alternate gene name:yaaS)


(SP:P37540] [LE:40663] [RE:41652] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_3916087_c2_216
187
3959
261
86
243
1.3e-20





Description







pir:[LN:A69742] [AC:A69742] [PN:conserved hypothetical protein yazA]


[GN:yazA] [CL:hypothetical protein 312] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1181968:g2632302] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:yazA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [NT:similar to


hypothetical proteins] [LE:43645] [RE:43944] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_3937950_f2_71
188
3960
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_3938838_c1_210
189
3961
846
281
1087
4.8e-110





Description







sp:[LN:DHPS_STAHA] [AC:Q59919] [GN:FOLP] [OR:STAPHYLOCOCCUS HAEMOLYTICUS]


[EC:2.5.1.15] [DE:PYROPHOSPHORYLASE) (DHPS)] [SP:Q59919] [DB:swissprot]


>gp:[GI:g1118002] [LN:SHU40768] [AC:U40768] [PN:dihydropteroate synthase]


[GN:folP] [OR:Staphylococcus haemolyticus] [DB:genpept-bct2] [EC:2.5.1.15]


[DE:Staphylococcus haemolyticus cysteine synthase A (cysK)


and dihydroneopterin aldolase (folQ) genes, partial cds, and dihydropteroate


synthase (folP) gene, complete cds.] [NT:DHPS] [LE:692] [RE:1495]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_4034707_f2_114
190
3962
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_4723192_c1_196
191
3963
606
201
539
5.7e-52





Description







sp:[LN:SP5C_BACSU] [AC:P37470] [GN:SPOVC:PTH] [OR:BACILLUS SUBTILIS]


[EC:3.1.1.29] [DE:SPORULATION PROTEIN C)] [SP:P37470] [DB:swissprot]


>pir:[LN:C69715] [AC:C69715:S66083] [PN:stage V sporulation protein


spoVC:spore coat formation protein spoVC] [GN:spoVC] [CL:peptidyl-tRNA


hydrolase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005830:g4674421


[LN:BAC180K] [AC:D26185] [PN:stage V sporulation] [GN:spoVC] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:123104] [RE:123670] [DI:direct] >gp:[GI:e1181986:g2632320]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:spoVC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [NT:thermosensitive mutant blocks spore coat formation]


[SP:P37470] [LE:59502] [RE:60068] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_4775312_c3_257
192
3964
405
134
436
4.7e-41





Description







sp:[LN:YABR_BACSU] [AC:P37560] [GN:YABR] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 14.2 KD PROTEIN IN DIVIC-SPOIIE INTERGENIC REGION]


[SP:P37560] [DB:swissprot] >pir:[LN:C53380] [AC:C53380:S66093:A69740]


[PN:polyribonucleotide nucleotidyltransferase homolog yabR:divIC 3′-region


hypothetical protein] [GN:yabR] [CL:polyribonucleotide


nucleotidyltransferase homolog yabR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005840:g467452] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:133226] [RE:133612] [DI:direct] >gp:[GI:g385178] [LN:BACDIVIC]


[AC:L23497] [PN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis cell division protein (divIC) gene, complete


cds, transfer RNA genes, complete sequence and sporulation protein (spoIIE)


gene, 5′ end of cds.] [NT:orf128; homologous to RNA binding domain of E.


coli] [LE:914] [RE:1300] [DI:direct] >gp:[GI:e1181996:g2632330]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabR] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to polyribonucleotide] [SP:P37560]


[LE:69624] [RE:70010] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_4884625_c1_189
193
3965
549
182
445
5.2e-42





Description







sp:[LN:YABF_BACSU] [AC:P37547] [GN:YABF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.7 KD PROTEIN IN METS-KSGA INTERGENIC REGION] [SP:P37547]


[DB:swissprot] >pir:[LN:S66070] [AC:S66070:G69738] [PN:conserved


hypothetical protein yabF] [GN:yabF] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005818:g467430] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:113687] [RE:114247] [DI:direct] >gp:[GI:e1181974:g2632308]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37547]


[LE:50085] [RE:50645] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_5317151_c3_264
194
3966
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_5344015_c3_255
195
3967
1281
426
849
8.0e-85





Description







sp:[LN:YABN_BACSU] [AC:P37556] [GN:YABN] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 56.1 KD PROTEIN IN MFD-DIVIC INTERGENIC REGION] [SP:P37556]


[DB:swissprot] >pir:[LN:S66088] [AC:S66088:E69739] [PN:conserved


hypothetical protein yabN:beta-lactamase regulatory protein homolog yabN]


[GN:yabN] [CL:beta-lactamase regulatory protein homolog:beta-lactamase


regulatory protein homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005835:g467447] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:130005] [RE:131474] [DI:direct] >gp:[GI:e1181991:g2632325]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabN] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37556]


[LE:66403] [RE:67872] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_5367813_c3_244
196
3968
543
180
432
1.2e-40





Description







sp:[LN:ATDA_ECOLI] [AC:P37354] [GN:SPEG] [OR:ESCHERICHIA COLI] [EC:2.3.1.57]


[DE:ACETYLTRANSFERASE) (SAT)] [SP:P37354] [DB:swissprot]


>gp:[GI:d1016007:g1742583] [LN:D90799] [AC:D90799:AB001340] [PN:Spermidine


N1-acetyltransferase (EC 2.3.1.57)] [GN:speG] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #308(35.3–35.7


min.).] [NT:ORF ID:o309#16; similar to [SwissProt Accession] [LE:<18154]


[RE:18711] [DI:direct] >gp:[GI:d1016029:g1742606] [LN:D90800]


[AC:D90800:AB001340] [PN:Spermidine N1-acetyltransferase (EC 2.3.1.57)]


[GN:speG] [OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone_lib:Kohara lambda minise) [DB:genpept-bct1] [DE:E. coli genomic DNA,


Kohara clone #309(35.4–35.7 min.).] [NT:ORF_ID:o309#16; similar to


[SwissProt Accession] [LE:<14930] [RE:15487] [DI:direct]


>gp:[GI:d1016031:g1742609] [LN:D90801] [AC:D90801:AB001340] [PN:Spermidine


N1-acetyltransferase (EC 2.3.1.57)] [GN:speG] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #310(35.7–36.0


min).] [NT:ORF_ID:o309#16; similar to [SwissProt Accession] [LE:<814]


[RE:1371] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_581260_f3_137
197
3969
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_6015842_c3_249
198
3970
900
299
750
2.5e-74





Description







sp:[LN:YABH_BACSU] [AC:P37550] [GN:YABH] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.7 KD PROTEIN IN SSPF-PURR INTERGENIC REGION (ORF1)]


[SP:P37550] [DB:swissprot] >pir:[LN:S66075] [AC:S66075:A69739]


[PN:conserved hypothetical protein yabH] [GN:yabH] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1005823:g467435] [LN:BAC180K] [AC:D26185] [PN:unknown]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:117116] [RE:117985] [DI:direct]


>gp:[GI:e1181979:g2632313] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [NT:similar to


hypothetical proteins] [SP:P37550] [LE:53514] [RE:54383] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_6136562_c2_223
199
3971
402
133
361
4.1e-33





Description







sp:[LN:YABJ_BACSU] [AC:P37552] [GN:YABJ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 13.7 KD PROTEIN IN PURR-SPOVG INTERGENIC REGION (ORF2)]


[SP:P37552] [DB:swissprot] >pir:[LN:S66077] [AC:S66077:B69739


[PN:conserved hypothetical protein yabJ] [GN:yabJ] [CL:hypothetical protein


HI0719] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005825:g467437]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:118895]


[RE:119272] [DI:direct] >gp:[GI:e1181981:g2632315] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:yabJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37552]


[LE:55293] [RE:55670] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_6742943_c2_217
200
3972
1983
660
2292
9.8e-238





Description







sp:[LN:SYM_BACSU] [AC:P37465] [GN:METS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.10]


[DE:[METRS)] [SP:P37465] [DB:swissprot] >pir:[LN:S66067] [AC:S66067:E69657]


[PN:methionine- -tRNA ligase, metS:methionyl-tRNA synthetase mets] [GN:metS]


[CL:methionine- -tRNA ligase] [OR:Bacillus subtilis] [EC:6.1.1.10] [DB:pir2]


>gp:[GI:d1005815:g467427] [LN:BAC180K] [AC:D26185] [PN:methionyl-tRNA


synthetase] [GN:metS] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:109233] [RE:111227]


[DI:direct] >gp:[GI:e1181971:g2632305] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:methionyl-tRNA synthetase] [GN:metS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.10] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to 213080.] [SP:P37465] [LE:45631] [RE:47625]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_6834427_c2_227
201
3973
150
49
93
0.00010





Description







sp:[LN:YABO_BACSU] [AC:P37557] [GN:YABO] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 9.7 KD PROTEIN IN MFD-DIVIC INTERGENIC REGION] [SP:P37557]


[DB:swissprot] >pir:[LN:S66089] [AC:S66089:F69739] [PN:conserved


hypothetical protein yabO] [GN:yabO] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005836:g467448] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:131477] [RE:131737] [DI:direct] >gp:[GI:e1181992:g2632326]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yabO] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:similar to hypothetical proteins] [SP:P37557]


[LE:67875] [RE:68135] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_7036526_c1_212
202
3974
159
52
86
0.00057





Description







pir:[LN:C64571] [AC:C64571] [PN:hypothetical protein HP0411]


[OR:Helicobacter pylori] [DB:pir2] >gp:[GI:g2313526] [LN:AE000557]


[AC:AE000557:AE000511] [PN:H. pylori predicted coding region HP0411]


[GN:HP0411] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 35 of 134 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:3068] [RE:3385]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_761_c1_187
203
3975
750
249
919
3.1e-92





Description







gp:[GI:e1386911:g4454321] [LN:SAU132803] [AC:AJ132803] [PN:hypothetical


protein] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE Staphylococcus


aureus ORF1 and ORF2 (partial).] [NT:ORF1] [LE:434] [RE:1159] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_829800_c1_201
204
3976
1575
524
700
4.9e-69





Description







gp:[GI:g4090864] [LN:AF023181] [AC:AF023181] [PN:low temperature requirement


B protein] [GN:ltrB] [OR:Listeria monocytogenes] [DB:genpept-bct2]


[DE:Listeria monocytogenes transcription-repair coupling factor (mfdL), low


temperature requirement B protein (ltrB), and DivIC homolog(divL) genes,


complete cds.] [LE:3972] [RE:5546] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_976638_c1_183
205
3977
1371
456
556
9.0e-54





Description







sp:[LN:YAAO_BACSU] [AC:P37536] [GN:YAAO] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 53.2 KD PROTEIN IN XPAC-ABRB INTERGENIC REGION] [SP:P375363


[DB:swissprot] >pir:[LN:S66057] [AC:S66057:F69737] [PN:lysine decarboxylase


homolog yaaO] [GN:yaaO] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005805:g467417] [LN:BAC180K] [AC:D26185] [PN:similar to lysine


decarboxylase] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:101320] [RE:102762]


[DI:direct] >gp:[GI:e1181960:g2632294] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:yaaO] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [NT:similar to


lysine decarboxylase] [SP:P37536] [LE:37718] [RE:39160] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000980_9876005_f3_159
206
3978
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_10392555_f3_17
207
3979
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_134392_f3_23
208
3980
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_1385927_f3_22
209
3981
369
122
85
0.039





Description







gp:[GI:e1332543:g3763999] [LN:PFMAL3P4] [AC:AL008970] [GN:MAL3P4.1]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P4, complete sequence.]


[NT:predicted using hexExon; MAL3P4.1 (PFC0570c),] [LE:106887:107747]


[RE:107641:108206] [DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_14882135_f2_11
210
3982
2112
703
167
1.6e-09





Description







sp:[LN:MELR_ECOLI] [AC:P10411] [GN:MELR] [OR:ESCHERICHIA COLI] [DE:MELIBIOSE


OPERON REGULATORY PROTEIN] [SP:P10411] [DB:swissprot] >pir:[LN:RGECMB]


[AC:A29625:S56347:E6522] [PN:melibiose operon regulatory protein] [GN:melR]


[CL:arabinose operon regulatory protein] [OR:Escherichia coli] [DB:pir1]


[MP:93 mm ] >gp:[GI:g536963] [LN:ECOUW93] [AC:U14003] [GN:melR]


[FN:regulatory gene] [OR:Escherichia coli] [DB:genpept-bct1] [DE:Escherichia


coli K-12 chromosomal region from 92.8 to 00.1 minutes.] [NT:CG Site No.


18166] [LE:31548] [RE:32456] [DI:complement] >gp:[GI:g1790559] [LN:AE000484]


[AC:AE000484:U00096] [PN:regulator of melibiose operon] [GN:melR]


[FN:regulator; Degradation of small molecules:] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 374 of 400 of the


complete genome.] [NT:f302; CG Site No. 18166] [LE:5093] [RE:6001]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_23634578_f3_18
211
3983
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_23860887_f2_13
212
3984
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_25634627_f2_12
213
3985
468
155
290
1.4e-25





Description







sp:[LN:GS26_BACSU] [AC:P80238:P96580] [GN:YDAG] [OR:BACILLUS SUBTILIS]


[DE:GENERAL STRESS PROTEIN 26 (GSP26)] [SP:P80238:P96580] [DB:swissprot]


>pir:[LN:G69768] [AC:G69768] [PN:general stress protein homolog ydaG]


[GN:ydaG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020013:g1881233]


[LN:AB001488] [AC:AB001488] [GN:ydaG] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the region between 35 and 47 degree.]


[NT:FUNCTION UNKNOWN.] [LE:6862] [RE:7284] [DI:direct]


>gp:[GI:e1182388:g2632722] [LN:BSUB0003] [AC:Z99106:AL00912G] [GN:ydaG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to 611850.] [NT:alternate gene


name:yzzA; similar to general] [SP:P80238] [LE:70606] [RE:71028]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_2584538_c1_29
214
3986
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_29352342_c2_36
215
3987
1296
431
1218
6.3e-124





Description







sp:[LN:GLTT_BACST] [AC:P24943] [GN:GLTT] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:PROTEIN)] [SP:P24943] [DB:swissprot) >pir:[LN:S26247] [AC:S26247]


[PN:glutamate/aspartate transport protein:sodium/proton-glutamate symport


protein] [GN:gltP] [OR:Bacillus stearothermophilus] [DB:pir2]


>gp:[GI:g143000] [LN:BACGLTPA] [AC:M86508] [PN:proton glutamate symport


protein] [GN:gltP] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (library:ATCC 7954) DNA] [DB:genpept-bct1] [DE:Bacillus


stearothermophilus proton glutamate symport protein (gltP)gene, complete


cds.] [LE:110] [RE:1375] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_30081465_c2_37
216
3988
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_32242200_f1_2
217
3989
378
125





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_3396042_c1_34
218
3990
315
104





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_34179828_c2_35
219
3991
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_4100336_f2_10
220
3992
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_6511652_c3_51
221
3993
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000981_822786_c1_33
222
3994
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10031712_c1_1057
223
3995
990
329
597
4.1e-58





Description







sp:[LN:YQJA_BACSU] [AC:P54538] [GN:YQJA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 37.1 KD PROTEIN IN BMRU-ANSR INTERGENIC REGION] [SP:P54538]


[DB:swissprot] >pir:[LN:A69963] [AC:A69963] [PN:hypothetical protein yqjA]


[GN:yqjA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013287:g1303952]


[LN:BACJH642] [AC:D84432:D82370] [PN:YqjA] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:229147] [RE:230115] [DI:direct] >gp:[GI:e1185663:g2634829] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P54538] [LE:93504] [RE:94472] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10312561_c3_1455
224
3996
1236
411
996
2.1e-100





Description







sp:[LN:RS1H_BACSU] [AC:P38494] [GN:YPFD:JOFD] [OR:BACILLUS SUBTILIS] [DE:30S


RIBOSOMAL PROTEIN S1 HOMOLOG] [SP:P38494] [DB:swissprot] >pir:[LN:B69935]


[AC:B69935] [PN:ribosomal protein S1 homolog homolog ypfD] [GN:ypfD]


[CL:Synechocystis ribosomal protein S1] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g533106] [LN:BSU11687] [AC:U11687] [PN:unknown] [GN:jofD]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 jofA,


jofB, MssA homolog (jofC) and ribosomal protein S1 homolog (jofD) genes,


complete cds, and joeB gene, partial cds.] [NT:similar to the Escherichia


coli S1 ribosomal] [LE:2651] [RE:3799] [DI:direct]


>gp:[GI:e1183733:g2634706] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypfD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541 to 2409220.] [NT:alternate


gene name:jofD; similar to ribosomal] [SP:P38494] [LE:198361] [RE:199509]


[DI:complement] >gp:[GI:g1146215] [LN:BACSERA] [AC:L47648] [GN:ypfD]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+


dependentglycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes, complete cds.] [NT:similar to Escherichia coli Si ribosomal protein;]


[LE:16888] [RE:18036] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10334752_f1_178
225
3997
192
63





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10588877_f3_947
226
3998
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10635918_c2_1290
227
3999
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10642180_c3_1513
228
4000
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10666068_c2_1228
229
4001
330
109
196
1.3e-15





Description







sp:[LN:CMG3_BACSU] [AC:P25955] [GN:COMGC:COMG3] [OR:BACILLUS SUBTILIS]


[DE:COMG OPERON PROTEIN 3 PRECURSOR] [SP:P25955] [DB:swissprot]


>pir:[LN:D30338] [AC:D30338:A35133:D69603] [PN:exogenous DNA-binding


protein comGC:comG operon protein 3] [GN:comGC] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g142708] [LN:BACCOMGA] [AC:M29691:M22854] [GN:comG3]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain 168) (clone:pED4) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis (clone pED4) comG- (1, 2, 3, 4, 5, 6, and


7) proteins incomG operon, complete cds.] [LE:3405] [RE:3701] [DI:direct]


>gp:[GI:d1013214:g1303879] [LN:BACJHG42] [AC:D84432:D82370] [PN:ComGC]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)]


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:161635] [RE:161931] [DI:direct]


>gp:[GI:e1185739:g2634905] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:comGC]


[FN:exogenous DNA-binding (competence)] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P25955] [LE:161690] [RE:161986] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1070437_c3_1482
230
4002
894
297
727
6.8e-72





Description







sp:[LN:YPCP_BACSU] [AC:P54161] [GN:YPCP] [OR:BACILLUS SUBTILIS]


[EC:3.1.11.-] [DE:POTENTIAL 5′-3′ EXONUCLEASE,] [SP:P54161] [DB:swissprot]


>pir:[LN:H69933] [AC:H69933] [PN:5′-3′ exonuclease homolog ypcP] [GN:ypcP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256623] [LN:BACYACA] [AC:L77246]


[PN:exodeoxyribonuclease] [GN:ypcP] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis (YAC10-9 clone) DNA region between the serA and kdg


loci.] [NT:36.1% identity with 219 aa at the 5′ end of the] [LE:9565]


[RE:10455] [DI:direct] >gp:[GI:e1183647:g2634620] [LN:BSUB0012]


[AC:Z99115:AL009126] [GN:ypcP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 12 of 21): 


from 2195541 to 2409220.] [NT:similar to 5′-3′ exonuclease] [SP:P54161]


[LE:114697] [RE:115587] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10938927_f2_492
231
4003
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_10969050_c2_1193
232
4004
1596
531
1815
3.5e-187





Description







sp:[LN:LEPA_BACSU] [AC:P37949] [GN:LEPA] [OR:BACILLUS SUBTILIS]


[DE:GTP-BINDING PROTEIN LEPA] [SP:P37949] [DB:swissprot] >pir:[LN:G69649]


[AC:G69649] [PN:GTP-binding protein lepA] [GN:lepA] [CL:GTP-binding


membrane protein lepA:translation elongation factor Tu homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013139:g1303804] [LN:BACJHG42]


[AC:D84432:D82370] [PN:YqeQ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:86866] [RE:88704]


[DI:direct] >gp:[GI:e200671:g1122398] [LN:BSLEPORF] [AC:X91655] [GN:lepA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis lepA and hemN


genes.] [SP:P37949] [LE:128] [RE:1966] [DI:direct]


>gp:[GI:e1183781:g2634997] [LN:BSUB0014] [AC:Z99117:AL009126]


[PN:GTP-binding protein] [GN:lepA] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 14 of 21): from 2599451 to


2812870.] [NT:alternate gene name:yqxB, yqeQ] [SP:P37949] [LE:30726]


[RE:32564] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_11194067_c3_1378
233
4005
747
248
431
1.6e-40





Description







sp:[LN:YQEM_BACSU] [AC:P54458] [GN:YQEM] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 28.3 KD PROTEIN IN AROD-COMER INTERGENIC REGION]


[SP:P54458] [DB:swissprot] >pir:[LN:A69952] [AC:A69952] [PN:conserved


hypothetical protein yqeM] [GN:yqeM] [CL:bioC homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013129:g1303794] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqeM] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheAl)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:76770] [RE:77513]


[DI:direct] >gp:[GI:e1183791:g2635007] [LN:BSUB0014] [AC:Z99117:AL009126]


[GN:yqeM] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 14 of 21): from 2599451 to 2812870.]


[NT:similar to hypothetical proteins] [LE:41917] [RE:42660] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_11203763_c1_985
234
4006
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_11881313_f1_285
235
4007
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_12116562_f2_354
236
4008
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1218750_c1_996
237
4009
681
226
336
1.8e-30





Description







gp:[GI:g3211753] [LN:AF052208] [AC:AF052208] [PN:competence protein]


[GN:celA] [OR:Streptococcus pneumoniae] DB:genpept-bct2] [DE:Streptococcus


pneumoniae competence protein (celA) and competence protein (celB) genes,


complete cds; and unknown gene.] [LE:266] [RE:916] [DI:direct
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1226553_c2_1270
238
4010
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1229750_c3_1419
239
4011
468
155
505
2.3e-48





Description







gp:[GI:e1363305:g4127534] [LN:BSAJ10954] [AC:AJ010954] [PN:arginine


repressor] [GN:argR] [FN:ADN binding protein] [OR:Bacillus


stearothermophilus] [DB:genpept-bct1] [DE:Bacillus stearothermophilus argR


gene and partial recN gene.] [LE:196] [RE:645] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1345752_f3_780
240
4012
945
314
720
3.8e-71





Description







sp:[LN:YQKF_BACSU] [AC:P54569] [GN:YQKF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL OXIDOREDUCTASE IN ANSR-BMRU INTERGENIC REGION] [SP:P54569]


[DB:swissprot] >pir:[LN:H69966] [AC:H69966] [PN:conserved hypothetical


protein yqkF] [GN:yqkF] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013318:g1303983] [LN:BACJHG42] [AC:D84432:D82370] [PN:YqkF]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:259404] [RE:260324] [DI:complement]


>gp:[GI:e1185631:g2634797] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqkF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


hypothetical proteins] [SP:P54569] [LE:63295] [RE:64215] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1359450_f2_544
241
4013
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_136068_f1_227
242
4014
1404
467
1201
4.0e-122





Description







pir:[LN:D70585] [AC:D70585] [PN:probable glyS protein] [GN:glyS]


[CL:Mycoplasma genitalium glycine- -tRNA ligase] [OR:Mycobacterium


tuberculosis] [DB:pir2] >gp:[GI:e315164:g20780432 [LN:MTCY27]


[AC:Z95208:AL123456] [PN:glyS] [GN:glyS] [OR:Mycobacterium tuberculosis]


[DB:genpept-bct1] [DE:Mycobacterium tuberculosis H37Rv complete genome;


segment 104/162.] [NT:Rv2357c, (MTCY27.23-MTCY98.26), len:463 aa. glyS,]


[LE:19] [RE:1410] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_13674130_f3_703
243
4015
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_13853500_f2_374
244
4016
246
81





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_13876943_c1_1122
245
4017
1488
495
882
2.6e-88





Description







pir:[LN:B69610] [AC:B69610:JC5744] [PN:carboxy-terminal processing


proteinase ctpA,:tail-specific endopeptidase Prc] [GN:ctpA]


[CL:carboxyl-terminal processing proteinase] [OR:Bacillus subtilis]


[EC:3.4.99.-] [DB:pir2] >gp:[GI:g2529476] [LN:AF006665] [AC:AF006665]


[PN:OrfRM1] [GN:orfRM1] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 region at 182 min containing the


cge genecluster.] [NT:similar to the E. coli Prc and carboxyl-terminal]


[LE:22886] [RE:24286] [DI:direct] >gp:[GI:g2415395] [LN:AF015775]


[AC:AF015775] [PN:proteinase] [GN:ctpA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis YodA (yodA), YodB (yodB), YodC


(yodC), YodD(yodD), ABC-transporter (yodE), permease (yodF), proteinase


(ctpA), YodH (yodH), YodI (yodI), carboxypeptidase (yodJ), purinenucleoside


phosphorylase (deoD), YodL (yodL), YodN (yodM), YodN(yodN), YodO CyodO),


YodP (yodP), acetylornitine deacetylase (argE), butirate-acetoacetate CoA


transferase (yodR) , butyrateace toacetate-CoA transferase (yodS), YodT


(yodT), CgeE (cgeE), CgeD(cgeD), CgeC (cgeC), CgeA (cgeA), CgeB (cgeB), YzxA


(yzxA), UDP-glucose epimerase (yodU), YodV CyodV), and YodW (yodW)


genes, complete cds; and YodZ (yodZ) gene, partial cds.] [NT:similar to


Synechocystis sp. PCC6803] [LE:5846] [RE:7246] [DI:complement]


>gp:[GI:e1185430:g2634351] [LN:BSUB001l] [AC:Z99114:AL009126]


[PN:carboxy-terminal processing protease] [GN:ctpA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [NT:alternate gene name:yzbD] [LE:130976]


[RE:132376] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14097011_c3_1411
246
4018
612
203
522
3.6e-50





Description







sp:[LN:ARGJ_BACST] [AC:Q07908] [GN:ARGJ] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:2.3.1.35:2.3.1.1] [DE:ACETYLTRANSFERASE, (N-ACETYLGLUTAMATE SYNTHASE)


(AGS)] [SP:Q07908] [DB:swissprot] >pir:[LN:I39766] [AC:I39766]


[PN:glutamate N-acetyltransferase,] [GN:argJ] [CL:glutamate


N-acetyltransferase argJ] [OR:Bacillus stearothermophilus] [EC:2.3.1.35]


[DB:pir2] >gp:LGI:g304135] [LN:BACACETYL] [AC:L06036] [PN:ornithine


acetyltransferase] [GN:argJ] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (strain NCIB 8224) DNA] [DB:genpept-bct1] [EC:2.3.1.35]


[DE:Bacillus stearothermophilus ornithine acetyltransferase (argJ)


and acetylglutamate kinase (argB) genes, complete cds's, argC gene, 3′ end,


and argD gene, 5′ end.] [NT:also bears acetyl-CoA:L-glutamate] [LE:902]


[RE:2134] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14259631_c1_967
247
4019
1068
355
1207
9.3e-123










Description


sp:[LN:QUEA_BACSU] [AC:O32054] [GN:QUEA] [OR:BACILLUS SUBTILIS] [EC:5.-.-.-]


[DE:[QUEUOSINE BIOSYNTHESIS PROTEIN QUEA)] [SP:O32054] [DB:swissprot]


>pir:[LN:A69688] [AC:A69688] [PN:S-adenosylmethionine:tRNA


ribosyltransferase-isomerase, queuosine biosynthesis-related protein queA]


[GN:queA] [CL:S-adenosylmethionine:tRNA ribosyltransferase-isomerase]


[OR:Bacillus subtilis] [EC:5.-.-.-] [DB:pir2] >gp:[GI:e1184021:g2635237]


[LN:BSUB0015] [AC:Z99118:AL009126] [PN:S-adenosylmethionine tRNA


ribosyltransferase] [GN:queA] [FN:queuosine biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21): from 2795131 to 3013540.] [SP:O32054] [LE:38030] [RE:39058]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14460932_f1_322
248
4020
177
58
226
8.4e-19





Description







gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14507827_f1_87
249
4021
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14508567_c3_1357
250
4022
276
91
184
2.4e-14





Description







pir:[LN:E69972] [AC:E69972] [PN:conserved hypothetical protein yrbF]


[GN:yrbF] [CL:yajC protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184019:g2635235] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:yrbF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [NT:similar to


hypothetical proteins] [LE:36555] [RE:36824] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_14881687_c2_1226
251
4023
993
330
1448
2.7e-148





Description







sp:[LN:GLK_STAXY] [AC:Q56198] [GN:GLKA] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:2.7.1.2] [DE:GLUCOKINASE, (GLUCOSE KINASE)] [SP:Q56198] [DB:swissprot]


>pir:[LN:S52352] [AC:S52352] [PN:glucose kinase] [CL:glucose kinase:glucose


kinase homology] [OR:Staphylococcus xylosus] [DB:pir2] >gp:[GI:g666116]


[LN:SXGKG2] [AC:X84332] [PN:glucose kinase] [GN:glkA] [OR:Staphylococcus


xylosus] [DB:genpept-bct1] [DE:S. xylosus glucose kinase gene.] [SP:Q5G198]


[LE:973] [RE:1959] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_15031535_f2_658
252
4024
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_15728386_c3_1356
253
4025
1143
380
1542
2.9e-158





Description







sp:[LN:TGT_BACSU] [AC:O32053] [GN:TGT] [OR:BACILLUS SUBTILIS] [EC:2.4.2.29]


[DE:TRANSGLYCOSYLASE) (GUANINE INSERTION ENZYME)] [SP:O32053] [DB:swissprot]


>pir:[LN:B69722] [AC:B69722] [PN:queuine tRNA-ribosyltransferase,] [GN:tgt]


[CL:queuine tRNA-ribosyltransferase] [OR:Bacillus subtilis] [EC:2.4.2.29]


[DB:pir2] >gp:[GI:e1184020:g2635236] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:tRNA-guanine transglycosylase] [GN:tgt] [FN:queuosine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.4.2.29] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [SP:O32053]


[LE:36858] [RE:38003] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_16205035_c1_1036
254
4026
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_16610088_c2_1261
255
4027
645
214
405
9.0e-38





Description







sp:[LN:YPAA_BACSU] [AC:P50726] [GN:YPAA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.5 KD PROTEIN IN SERA-FER INTERGENIC REGION] [SP:P50726]


[DB:swissprot] >pir:[LN:E69932] [AC:E69932] [PN:hypothetical protein ypaA]


[GN:ypaA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185574:g2634740]


[LN:BSUB0013] [AC:Z99116:AL009126] [GN:ypaA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


13 of 21): from 2395261 to 2613730.] [SP:P50726] [LE:13991] [RE:14563]


[DI:complement] >gp:[GI:g1146197] [LN:BACSERA] [AC:L47648] [GN:ypaA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD-+


dependentglycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes complete cds.] [NT:putative] [LE:2114] [RE:2686] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_16828175_c3_1395
256
4028
606
201
1021
4.8e-103





Description







gp:[GI:g4325247] [LN:AF121672] [AC:AF121672] [PN:superoxide dismutase SodA]


[GN:sodA] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus superoxide dismutase SodA (sodA) gene, complete cds.]


[NT:manganese-dependent] [LE:246] [RE:845] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_16923383_c2_1252
257
4029
339
112
156
3.1e-11





Description







sp:[LN:YQJQ_BACSU] [AC:P54554] [GN:YQJQ] [OR:BACILLUS SUBTILIS] [EC:1.-.-.-]


[DE:[EC 1.-.-.-)] [SP:P54554] [DB:swissprot] >pir:[LN:A69965] [AC:A69965]


[PN:ketoacyl reductase homology qjQ] [GN:yqjQ] [CL:short-chain alcohol


dehydrogenase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013303:g1303968] [LN:BACJH642] [AC:D84432:D82370] [PN:YqjQ]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JHG42CtrpC2 PheAl))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:247869] [RE:248648] [DI:direct]


>gp:[GI:e1185647:g2634813] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqjQ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


ketoacyl reductase] [SP:P54554] [LE:74971] [RE:75750] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_17002217_c2_1254
258
4030
465
154
587
4.7e-57





Description







sp:[LN:FUR2_BACSU] [AC:P54574] [GN:YQKL] [OR:BACILLUS SUBTILIS] [DE:FERRIC


UPTAKE REGULATION PROTEIN HOMOLOG 2] [SP:P54574] [DB:swissprot]


>pir:[LN:E69967] [AC:E69967] [PN:transcription regulator Fur family homolog


yqkL] [GN:yqkL] [CL:ferric uptake regulator] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1013328:g1303993] [LN:BACJH642] [AC:D84432:D82370]


[PN:YqkL] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2


PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region


containing skin element.] [LE:269361] [RE:269810] [DI:direct]


>gp:[GI:e1185621:g2634787] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqkL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


transcriptional regulator (Fur family)] [SP:P545742 [LE:53809] [RE:54258]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_187593_c1_1074
259
4031
972
323
177
3.8e-12





Description







sp:[LN:YPBB_BACSU] [AC:P50728] [GN:YPBB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 40.7 KD PROTEIN IN FER-RECQ INTERGENIC REGION] [SP:P50728]


[DB:swissprot] >pir:[LN:F69932] [AC:F69932] [PN:hypothetical protein ypbB]


[GN:ypbB] [OR:Bacillus subtilis] [DB:pir2] >gp:GI:e1183748:g2634721]


[LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypbB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


12 of 21): from 2195541 to 2409220.] [SP:P50728] [LE:212099] [RE:213157]


[DI:complement] >gp:[GI:e1185572:g2634738] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:ypbB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P50728] [LE:12379] [RE:13437] [DI:complement]


>gp:[GI:g1146199] [LN:BACSERA] [AC:L47648] [GN:ypbB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis phosphoglycerate dehydrogenase


(serA), ypaA, ferredoxin (fer), ypbB, recS, ypbD, ypbE, ypbF, ypbG,


ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB, ypdC, spore cortexlytic


enzyme (sleB), ypeB, ypfA, ypfB, cytidine monophosphatekinase (cmk), ypfD,


ypgA, yphA, yphB, yphC, NAD+ dependentglycerol-3-phosphate dehydrogenase


(glyc), yphE and yphF genes, complete cds.] [NT:putative] [LE:3240] [RE:4298]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_189203_c2_1199
260
4032
762
253
550
3.9e-53





Description







sp:[LN:YQEU_BACSU] [AC:P54461] [GN:YQEU] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 28.8 KD PROTEIN IN DNAJ-RPSU INTEREGENIC REGION]


[SP:P54461] [DB:swissprot] >pir:[LN:D69952] [AC:D69952] [PN:conserved


hypothetical protein yqeU] [GN:yqeU] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013146:g1303811] [LN:BACJHG42] [AC:D84432:D82370] [PN:YqeU]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:95803] [RE:96573] [DI:direct] >gp:[GI:e1183774:g2634990]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqeU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [NT:similar to hypothetical proteins]


[SP:P54461] [LE:22857] [RE:23627] [DI:complement] >gp:[GI:d1012752:g1890060]


[LN:D83717] [AC:D83717] [PN:YqeU] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:JH642 (trpC2 pheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis DNA for DnaJ, YqeT, YqeU, YqeV, YqeW, YqeX, YqeY, complete and


partial cds.] [NT:Similar to 26.9 kDa protein (YggJ) of E. coli] [LE:1334]


[RE:2104] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_19540931_c2_1191
261
4033
2220
739
647
2.0e-63





Description







sp:[LN:CME3_BACSU] [AC:P39695] [GN:COMEC:COME3] [OR:BACILLUS SUBTILIS]


[DE:COME OPERON PROTEIN 3] [SP:P39695] [DB:swissprot] >pir:[LN:S39865]


[AC:S39865:E69602] [PN:late competence protein 3 (comE operon)] [GN:comEC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g289262] [LN:BACCOME] [AC:L15202]


[OR:Bacillus subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct2]


[DE:Bacillus subtilis comE operon encoding ORF1, ORF2, ORF3 and Reverse-ORF


genes, complete cds.] [LE:2603] [RE:4933] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_19567588_c3_1496
262
4034
513
170
443
8.5e-42





Description







sp:[LN:PTGA_BACST] [AC:P42015] [GN:PTSG] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:2.7.1.69] [DE:COMPONENT), (EII-GLC/EIII-GLC) (FRAGMENT)] [SP:P42015]


[DB:swissprot] >gp:[GI:g529001] [LN:BSU12340] [AC:U12340] [PN:PTS


glucose-specific permease] [GN:ptsG′] [OR:Bacillus stearothermophilus]


[DB:genpept-bct1] [DE:Bacillus stearothermophilus XL-65-6


phosphoenolpyruvate-dependentphosphotransferase system glucose-specific


permease (ptsG′) gene, partial cds, HPr (ptsH), enzyme I (ptsI), and PtsT


(ptsT) genes, complete cds, and wall associated protein precursor (wapA′)


gene, complete cds.] [NT:thermophilic, cytoplasmic protein] [LE:<1] [RE:976]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_19567812_c3_1495
263
4035
465
154
478
1.7e-45





Description







sp:[LN:YPPQ_BACSU] [AC:P54155] [GN:YPPQ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 16.6 KD PROTEIN IN ILVA 3′REGION] [SP:P54155]


[DB:swissprot] >pir:[LN:F69940] [AC:F69940] [PN:transcription regulator


PilB family homolog yppQ] [GN:yppQ] [CL:hypthetical protein YCL033c]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256654] [LN:BACYACA] [AC:L77246]


[GN:yppQ] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


[YAC10-9 clone) DNA region between the serA and kdg loci.] [NT:54.8% identity


with Neisseria gonorrhoeae] [LE:33923] [RE:34354] [DI:direct]


>gp:[GI:e1183615:g2634588] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:yppQ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541 to 2409220.] [NT:similar to


transcriptional regulator (PilB family)] [SP:P54155] [LE:90798] [RE:91229]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_1960017_f3_809
264
4036
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_19804838_f2_385
265
4037
717
238
549
5.0e-53





Description







sp:[LN:YPDP_BACSU] [AC:P54163] [GN:YPDP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 25.7 KD PROTEIN IN BCSA-DEGR INTERGENIC REGION] [SP:P54163]


[DB:swissprot] >pir:[LN:C69934] [AC:C69934] [PN:conserved hypothetical


protein ypdP] [GN:ypdP] [CL:Archaeoglobus fulgidus conserved hypothetical


protein AF2110] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256625]


[LN:BACYACA] [AC:L77246] [GN:ypdP] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis (YAC10-9 clone) DNA region between the serA and kdg


loci.] [NT:putative] [LE:11031] [RE:11720] [DI:complement]


>gp:[GI:e1183645:g2634618] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypdP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541 to 2409220.] [NT:similar to


hypothetical proteins] [SP:P54163] [LE:113432] [RE:114121] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20006377_c3_1392
266
4038
732
243
432
1.2e-40





Description







sp:[LN:YQFN_BACSU] [AC:P54471] [GN:YQFN] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 23.7 KD PROTEIN IN CCCA-SODA INTERGENIC REGION] [SP:P54471]


[DB:swissprot] >pir:[LN:H69953] [AC:H69953] [PN:conserved hypothetical


protein yqfN] [GN:yqfN] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013170:g1303835] [LN:BACJH642] [AC:D84432:D82370] [PN:YqfN]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:120338] [RE:120988] [DI:direct]


>gp:[GI:e1185785:g2634951] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqfN]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


hypothetical proteins] [SP:P54471] [LE:202632] [RE:203282] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20035967_c1_1082
267
4039
1059
352
922
1.5e-92





Description







pir:[LN:H69636] [AC:H69636] [PN:glycerol-3-phosphate dehydrogenase (NAD+),


gpsA] [GN:gpsA] [CL:glycerol-3-phosphate dehydrogenase] [OR:Bacillus


subtilis] [EC:1.1.1.8] [DB:pir2] >gp:[GI:e1183728:g2634701] [LN:BSUB0012]


[AC:Z99115:AL009126] [PN:NAD(P)H-dependent glycerol-3-phosphate] [GN:gpsA]


[FN:synthesis of the sn-glycerol 3-phosphate] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.1.1.94] [DE:Bacillus subtilis complete genome


(section 12 of 21): from 2195541 to 2409220.] [SP:P46919] [LE:192848]


[RE:193885] [DI:complement] >gp:[GI:g1146220] [LN:BACSERA] [AC:L47648]


[PN:NAD+dependent glycerol-3-phosphate] [GN:glyC] [OR:Bacillus subtilis]


[DB:genpept-bct2] [EC:1.1.1.94] [DE:Bacillus subtilis phosphoglycerate


dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS, ypbD, ypbE, ypbF,


ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB, ypdC, spore


cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine monophosphatekinase


(cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+dependentglycerol-3-phosphate


dehydrogenase (glyc), yphE and yphF genes, complete cds.] [LE:22512]


[RE:23549] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20054642_f2_341
268
4040
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2038325_f2_381
269
4041
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20485712_c3_1498
270
4042
573
190





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20503437_c3_1456
271
4043
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20507937_c2_1280
272
4044
1317
438
1823
4.9e-188





Description







sp:[LN:SYN_BACSU] [AC:P39772] [GN:ASNS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.22]


[DE:(ASNRS)] [SP:P39772] [DB:swissprot] >pir:[LN:B69591] [AC:B69591:I40523]


[PN:asparagine- -tRNA ligase, asnS:asparaginyl-tRNA synthetase asnS] [GN:asnS]


[CL:lysine- -tRNA ligase] [OR:Bacillus subtilis] [EC:6.1.1.22] [DB:pir2]


>gp:[GI:g1146247] [LN:BACYPIA] [AC:L47709] [PN:asparaginyl-tRNA synthetase]


[GN:asnS] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.22]


[DE:Bacillus subtilis (clone YAC15-6B) ypiABF genes, qcrABC


genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene, ypmB gene, aspB


gene, asnS gene, dnaD gene, nth gene and ypoC gene, complete cds's.]


[NT:41.1% of identity to the Escherichia coli] [LE:20449] [RE:21741]


[DI:direct] >gp:[GI:e1183681:g2634654] [LN:BSUB0012] [AC:Z99115:AL009126]


[PN:asparaginyl-tRNA synthetase] [GN:asnS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.22] [DE:Bacillus subtilis complete genome


(section 12 of 21): from 2195541 to 2409220.] [SP:P39772] [LE:149926]


[RE:151218] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20517135_c3_1457
273
4045
315
104
361
4.1e-33





Description







sp:[LN:DBH_BACST] [AC:P02346:P08822] [GN:HBS:HBSU] [OR:BACILLUS


STEAROTHERMOPHILUS:BACILLUS CALDOLYTICUS:BACILLUS CALDOTENAX]


[DE:DNA-BINDING PROTEIN II (HB) (HU)] [SP:P02346:P08822] [DB:swissprot]


>pir:[LN:DNBS2F] [AC:JC1205:A02690:JC2509] [PN:DNA-binding protein


HU:DNA-binding protein II] [GN:hup] [CL:bacterial DNA-binding protein]


[OR:Bacillus stearothermophilus] [DB:pir1] >pir:[LN:JC1207] [AC:JC1207]


[PN:DNA-binding protein HU] [GN:hup] [CL:bacterial DNA-binding protein]


[OR:Bacillus caldolyticus] [DB:pir2] >pir:[LN:JC1206] [AC:JC1206]


[PN:DNA-binding protein HU] [GN:hup] [CL:bacterial DNA-binding protein]


[OR:Bacillus caldotenax] [DB:pir2] >gp:[GI:d1007851:g1065992] [LN:BACDBPHU]


[AC:D38080] [PN:DNA binding protein HU] [OR:Bacillus stearothermophilus]


[SR:Bacillus stearothermophilus (strain:1503) DNA] [DB:genpept-bct1]


[DE:Bacillus stearothermophilus gene for DNA binding protein HU, complete


cds.] [LE:13] [RE:285] [DI:direct] >gp:[GI:g143065] [LN:BACHUB1] [AC:M73500]


[PN:hubst] [GN:hubst] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus DNA] [DB:genpept -bct1] [DE:B. stearothermophilus hubst


gene, complete cds.] [LE:1] [RE:>270] [DI:direct] >gp:[GI:g143067]


[LN:BACHUB2] [AC:M73501] [PN:hubcalx] [GN:hubcalx] [OR:Bacillus caldotenax]


[SR:Bacillus caldotenax DNA] [DB:genpept-bct1] [DE:B. caldotenax hubcalx


gene, 5′ end.] [LE:1] [RE:>270] [DI:direct] >gp:[GI:g143069] [LN:BACHUB3]


[AC:M73502] [PN:hubcald] [GN:hubcald] [OR:Bacillus caldolyticus]


[SR:Bacillus caldolyticus DNA] [DB:genpept-bct1] [DE:B. caldolyticus hubcald


gene, 5′ end.] [LE:1] [RE:>270] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20587536_f1_4
274
4046
630
209
241
2.2e-20





Description







sp:[LN:XPAC_BACSU] [AC:P37467] [GN:XPAC] [OR:BACILLUS SUBTILIS] [DE:XPAC


PROTEIN] [SP:P37467] [DB:swissprot] >pir:[LN:527526]


[AC:S27526:S66055:C69734] [PN:5-bromo-4-chloroindolyl phosphate hydrolysis


protein xpaC:xpaC protein] [GN:xpaC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005803:g467415] [LN:BAC180K] [AC:D26185] [PN:hydrolysis of


5-bromo-4-chloroindolyl phosphate] [GN:xpaC] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:99445] [RE:100059] [DI:direct] >gp:[GI:g143830] [LN:BACXPAC]


[AC:M96156] [GN:xpaC] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain


W168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis ORF1 and xpaC gene,


complete cds's; ssrRNA gene,3′ end; ORF3C 5′ end.] [LE:532] [RE:1146]


[DI:direct] >gp:[GI:e1181958:g2632292] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:xpaC] [FN:hydrolysis of 5-bromo 4-chloroindolyl phosphate] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [SP:P37467] [LE:35843] [RE:36457] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20594688_c2_1331
275
4047
1725
574
126
6.2e-08





Description







sp:[LN:LPLA_BACSU] [AC:P37966] [GN:LPLA] [OR:BACILLUS SUBTILIS]


[DE:LIPOPROTEIN LPLA PRECURSOR] [SP:P37966] [DB:swissprot] >pir:LN:I39876]


[AC:I39876:H69652] [PN:lipoprotein lplA:lysis protein lplA] [GN:lplA]


[CL:Bacillus subtilis lipoprotein lplA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182689:g2633023] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:lipoprotein] [IGN:lplA] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 4 of 21): from 600701


to 813890.] [SP:P37966] [LE:178337] [RE:179845] [DI:direct] >gp:[GI:g431272]


[LN:BACLPLA] [AC:L03376] [PN:lysis protein] [GN:lplA] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain Marburg 168) DNA] [DB:genpept-bct2]


[DE:Bacillus subtilis lysis protein (lplA) gene, complete cds.] [LE:482]


[RE:1990] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20734677_c1_1135
276
4048
774
257
297
2.5e-26





Description







gp:[GI:g4981613] [LN:AE001767] [AC:AE001767:AE000512] [PN:transcriptional


regulator, DeoR family] [GN:TM1069] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 79 of 136 of the complete


genome.] [NT:similar to GB:AL009126 percent identity:55.02;] [LE:1578]


[RE:2336] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20791068_c3_1370
277
4049
273
90
71
0.041





Description







gp:[GI:g294060] [LN:PAPMPL146A] [AC:L06467] [PN:major latex protein]


[GN:MLP14G] [OR:Papaver somniferum] [SR:Papaver somniferum (strain UNL186)


(library:EMBL) DNA] [DB:genpept-plnl] [DE:Papaver somniferum major latex


protein (MLP146) gene, complete cds.] [LE:963:1290] [RE:1167:1564]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_20876263_f1_159
278
4050
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2148387_c1_1089
279
4051
1278
425
1794
5.8e-185





Description







sp:[LN:AROC_STAAU] [AC:Q59803] [GN:AROC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.6.1.4] [DE:PHOSPHOLYASE)] [SP:Q59803] [DB:swissprot] >gp:[GI:g987498]


[LN:SAU31979] [AC:U31979] [PN:chorismate synthase] [GN:aroC]


[QR:Staphylococcus aureus] [DB:genpept-bct1] [EC:4.6.1.4] [DE:Staphylococcus


aureus chorismate synthase (aroC) and nucleosidediphosphate kinase (ndk)


genes, complete cds, dehydroauinatesynthase (aroB) and geranylgeranyl


pyrophosphate synthetase homolog(gerCC) genes, partial cds.]


[NT:5-enolpyruvyishikimate 3-phosphate phospho-lyase] [LE:1142] [RE:2308]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21501550_c1_1127
280
4052
1116
371
999
1.0e-100





Description







gp:[GI:g3688811] [LN:AF084104] [AC:AF084104] [PN:maltose transportor


ATP-binding protein] [GN:malK] [OR:Bacillus firmus] [DB:genpept-bct2]


[DE:Bacillus firmus AcsA (acsA) gene, partial cds; SspA CsspA), hypothetical


protein, maltose transportor ATP-binding protein(malK), leucine-rich protein


transcriptional regulator (lrpR), hypothetical proteins, ABC transporter


ATP-binding protein (natC) ,NatA (natA), NatB (natB), and hypothetical


protein genes, complete cds; and SpoIIIJ (spoIIIJ) gene, partial cds.]


[NT:MalK; Orf4; similar to MsmX from Bacillus subtilis,] [LE:2390] [RE:3490]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21526562_c2_1206
281
4053
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21531627_c3_1483
282
4054
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21537962_c1_1093
283
4055
612
203
357
1.1e-32





Description







sp:[LN:YPJA_BACSU] [AC:P543921] [GN:YPJA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 21.3 KD PROTEIN IN QCRC-DAPB INTERGENIC REGION] [SP:P54392]


[DB:swissprot] >pir:[LN:A69937] [AC:A69937] [PN:hypothetical protein ypjA]


[GN:ypjA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1146230] [LN:BACYPIA]


[AC:L47709] [GN:ypjA] [FN:hypothetical] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis (clone YAC15-6B) ypiABF genes,


qcrABC genes,ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene, ypmB


gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene,


complete cds's.] [NT:putative] [LE:5002] [RE:5559] [DI:direct]


>gp:[GI:e1183698:g2634671] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypjA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541 to 2409220.] [SP:P54392]


[LE:166108] [RE:166665] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21568762_c1_1013
284
4056
1005
334
992
5.6e-100





Description







gp:[GI:e1356351:g3947511] [LN:BMAJ4B29] [AC:AJ224829] [GN:ORF4] [OR:Bacillus


megaterium] [DB:genpept-bct1] [DE:Bacillus megaterium DSM319 spoIV operon,


5′ flanking region, 3′ flanking region.] [LE:3056] [RE:4030] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21600325_f1_228
285
4057
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21640636_f1_136
286
4058
276
91
366
1.2e-33





Description







pir:[LN:D69621] [AC:D69621] [PN:ferredoxin fer] [GN:fer] [CL:ferredoxin


2[4Fe-4S]:ferredoxin 2[4Fe-4S] homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183749:g2634722] [LN:BSUB0012] [AC:Z99115:AL009126]


[PN:ferredoxin] [GN:fer] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 12 of 21): from 2195541 to


2409220.] [NT:alternate gene name:ypbA] [SP:P50727] [LE:213423] [RE:213671]


[DI:direct] >gp:[GI:e1185573:g2634739] [LN:BSUB0013] [AC:Z99116:AL009126]


[PN:ferredoxin] [GN:fer] [OR:Bacillus subtilis] [DB:genpept-bct2.]


[DE:Bacillus subtilis complete genome (section 13 of 21): from 2395261 to


2613730.] [NT:alternate gene name:ypbA] [SP:P50727] [LE:13703] [RE:13951]


[DI:direct] >gp:[GI:g1146198] [LN:BACSERA] [AC:L47648] [PN:ferredoxin]


[GN:fer] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+


dependentglycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes, complete cds.] [NT:ypbA; similar to B. stearothermophilus ferredoxin;)


[LE:2726] [RE:2974] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21667676_c1_975
287
4059
888
295
590
2.2e-57





Description







pir:[LN:C69981] [AC:C69981] [PN:conserved hypothetical protein yrvM]


[GN:yrvM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184002:g2635218]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:yrvM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21): from 2795131 to 3013540.] [NT:similar to hypothetical proteins)]


[LE:17779] [RE:18264] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21674067_f1_8
288
4060
198
65





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21678187_c3_1486
289
4061
240
79





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21730443_c1_1055
290
4062
1332
443
904
1.2e-90





Description







sp:[LN:ODB2_BACSU] [AC:P37942] [GN:BFMBB:BFMB2:BFMB] [OR:BACILLUS SUBTILIS]


[EC:2.3.1.-] [DE:CHAIN TRANSACYLASE)] [SP:P37942] [DB:swissprot]


pir:[LN:S32488] [AC:S32488:E69593] [PN:dihydrolipoamide


S-acyltransferase,, alpha-oxo acid dehydrogenase complex


(bfmBB):branched-chain alpha-oxo acid dehydrogenase complex E2


component:dihydrolipoyl acyltransferase] [GN:bfmBB] [CL:dihydrolipoamide


acetyltransferase:lipoyl/biotin-binding homology] [OR:Bacillus subtilis]


[EC:2.3.1.-] [DB:pir2] >gp:[GI:g142613] [LN:BACBRANCH] [AC:M97391:M96937]


[PN:branched chain alpha-keto acid dehydrogenase E2] [OR:Bacillus subtilis]


[SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis branched


chain alpha-keto acid dehydrogenaseE1-alpha, branched chain alpha-keto acid


dehydrogenase E1-beta, and branched chain alpha-keto acid dehydrogenase E2,


complete cds.] [LE:2228] [RE:3502] [DI:direct] >gp:[GI:d1013279:g1303944]


[LN:BACJH642] [AC:D84432:D823701] [PN:BfmBB] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:221574] [RE:222848] [DI:direct] >gp:[GI:e1185671:g2634837] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:branched-chain alpha-keto acid dehydrogenase E2]


[GN:bfmBB] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.3.1.-]


[DE:Bacillus subtilis complete genome (section 13 of 21): from 2395261 to


2613730.] [NT:alternate gene name:bfmB2] [SP:P37942] [LE:100771]


[RE:102045] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21756562_c2_1289
291
4063
696
231
162
5.1e-12





Description







pir:[LN:G69828] [AC:G69828] [PN:calcium-binding protein homolog yheG]


[GN:yheG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182974:g2633308]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yheG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:similar to calcium-binding protein]


[LE:49122] [RE:49742] [DI:complement] >gp:[GI:e325187:g2226164]


[LN:BSY14080] [AC:Y14080] [PN:hypothetical protein] [GN:yheG] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 75


degrees:sspB upstream of glyB.] [NT:similarity to bovine flavin reductase


[PID =] [LE:11988] [RE:12608] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21759427_c3_1407
292
4064
1350
449
1396
8.7e-143





Description







sp:[LN:GCS1_BACSU] [AC:P54376] [GN:YQHJ] [OR:BACILLUS SUBTILIS] [EC:1.4.4.2]


[DE:PROTEIN)] [SP:P54376] [DB:swissprot] >pir:[LN:A69959] [AC:A69959]


[PN:glycine dehydrogenase homolog yqhJ] [GN:yqhJ] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1013226:g1303891] [LN:BACJH642] [AC:D84432:D82370]


[PN:YqhJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2


PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region


containing skin element.] [LE:171390] [RE:172736] [DI:direct]


>gp:[GI:e1185724:g2634890] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqhJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


glycine dehydrogenase] [SP:P54376] [LE:150885] [RE:152231] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21914067_c3_1512
293
4065
1416
471
532
3.1e-51





Description







gp:[GI:g2182835] [LN:LLU81166] [AC:U81166] [PN:histidine kinase LlkinA]


[GN:llkinA] [OR:Lactococcus lactis subsp. cremoris] [DB:genpept-bct2]


[DE:Lactococcus lactis subsp. cremoris MG1363 histidine kinase (llkinA)gene,


complete cds.] [LE:1] [RE:1473] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2195307_c3_1402
294
4066
1095
364
348
9.9e-32





Description







sp:[LN:CMG2_BACSU] [AC:P25954] [GN:COMGB:COMG2] [OR:BACILLUS SUBTILIS]


[DE:COMG OPERON PROTEIN 2] [SP:P25954] [DB:swissprot] >pir:[LN:C30338]


[AC:C30338:C69603] [PN:DNA transport machinery protein comGB:comG operon


protein 2] [GN:comGB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142707]


[LN:BACCOMGA] [AC:M29691:M22854] [GN:comG2] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain 168) (clone:pED4) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis (clone pED4) comG-(1, 2, 3, 4, 5, 6, and 7) proteins incomG


operon, complete cds.] [LE:2420] [RE:3391] [DI:direct]


>gp:[GI:d1013213:g1303878] [LN:BACJHG42] [AC:D84432:D82370] [PN:ComGB]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:160650] [RE:161621] [DI:direct]


>gp:[GI:e1185740:g2634906] [LN:BSUB0013] [AC:Z99116:AL009126] [PN:probably


part of the DNA transport machinery] [GN:comGB] [FN:competence] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


13 of 21): from 2395261 to 2613730.] [SP:P25954] [LE:162000] [RE:162971]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_21962762_c1_1139
295
4067
732
243
615
5.0e-60





Description







gp:[GI:g143267] [LN:BACODHAB] [AC:M27141] [OR:Bacillus subtilis]


[SR:B. subtilis (strain 3G18) DNA] [DB:genpept-bct1] [DE:B. subtilis


2-oxoglutarate dehydrogenase (odhA) gene 3′ end, and dihydrolipoamide


transsuccinylase (odhB) gene, complete cds.] [NT:2-oxoglutarate


dehydrogenase (odhA; EC 1.2.4.2)] [LE:<1] [RE:883] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_22031307_f3_906
296
4068
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2227312_c1_974
297
4069
1782
593
2019
8.4e-209





Description







sp:[LN:SYD_BACSU] [AC:O32038] [GN:ASPS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.12]


[DE:[ASPRS)] [SP:O32038] [DB:swissprot] >pir:[LN:D69591] [AC:D69591]


[PN:aspartate- -tRNA ligase, aspS:aspartyl-tRNA synthetase] [GN:aspS]


[CL:lysine- -tRNA ligase] [OR:Bacillus subtilis] [EC:6.1.1.12] [DB:pir2]


>gp:[GI:e1184003:g2635219] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:aspartyl-tRNA synthetase] [GN:aspS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.12] [DE:Bacillus subtilis complete genome


(section 15 of 21): from 2795131 to 3013540.] [SP:O32038] [LE:18878]


[RE:20656] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_22459462_c2_1275
298
4070
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_22661088_c3_1363
299
4071
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23392_f2_366
300
4072
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23445266_c1_1120
301
4073
567
188
579
3.3e-56





Description







sp:[LN:PMSR_BACSU] [AC:P54154] [GN:YPPP] [OR:BACILLUS SUBTILIS]


[DE:REDUCTASE)] [SP:P54154] [DB:swissprot] >pir:[LN:E69940] [AC:E69940


[PN:peptide methionine sulfoxide reductase homolog yppP] [GN:yppP]


[CL:peptide methionine sulfoxide reductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1256653] [LN:BACYACA] [AC:L77246] [PN:DNA-binding protein]


[GN:yppP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


(YAC10-9 clone) DNA region between the serA and kdg loci.] [NT:42.4% identity


with the Lycopersicon esculentum] [LE:33389] [RE:33922] [DI:direct]


>gp:[GI:e1183616:g2634589] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:yppP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541 to 2409220.] [NT:similar to


peptide methionine sulfoxide reductase] [SP:P54154] [LE:91230] [RE:91763]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23445762_c3_1397
302
4074
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23468938_f1_258
303
4075
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23470327_c2_1225
304
4076
1461
486
446
4.1e-42





Description







pir:[LN:552351] [AC:S52351] [PN:hypothetical protein 1] [OR:Staphylococcus


xylosus] [DB:pir2] >gp:[GI:g666115] [LN:SXGKG2] [AC:X84332] [GN:ugl]


[OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:S. xylosus glucose kinase


gene.] [NT:orf1 upstream of glucose kinase] [LE:<1] [RE:406] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23470452_c2_1183
305
4077
441
146
214
1.6e-17





Description







pir:[LN:F71860] [AC:F71860] [PN:biotin carboxyl carrier protein] [GN:accB]


[CL:biotin carboxyl carrier protein:lipoyl/biotin-binding homology]


[OR:Helicobacter pylori] [SR:strain J99, , strain J99] [SR:strain J99,]


[DB:pir2] >gp:[GI:g4155592] [LN:AE001529] [AC:AE001529:AE001439] [PN:BIOTIN


CARBOXYL CARRIER PROTEIN] [GN:accB] [OR:Helicobacter pylori J99]


[DB:genpept-bct2] [DE:Helicobacter pylori, strain J99 section 90 of 132 of


the complete genome.] [NT:similar to H. pylori 26695 gene HP0371] [LE:5447]


[RE:5932] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23476676_c2_1204
306
4078
369
122
227
6.6e-19





Description







gp:[GI:g902055] [LN:BSU29177] [AC:U29177] [PN:diacylglycerol kinase]


[GN:dgk] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis PhoH


(phoH) gene, partial cds, diacylglycerolkinase (dgk) gene, complete cds, and


cytidine deaminase (cdd) gene, partial cds.] [LE:2793] [RE:3197] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23595137_c2_1185
307
4079
558
185
522
3.6e-50





Description







sp:[LN:YQEG_BACSU] [AC:P54452] [GN:YQEG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.1 KD PROTEIN IN NUCB-AROD INTERGENIC REGION] [SP:P54452]


[DB:swissprot] >pir:[LN:C69951] [AC:C69951] [PN:conserved hypothetical


protein yqeG] [GN:yqeG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013122:g1303787] [LN:BACJH642] [AC:D84432:D82370] [PN:YqeG]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:72502] [RE:73020] [DI:direct] >gp:[GI:e1183798:g2635014]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqeG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [NT:similar to hypothetical proteins]


[SP:P54452] [LE:46410] [RE:46928] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23597252_f2_557
308
4080
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23620205_f2_640
309
4081
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23625000_c2_1246
310
4082
1683
560
2374
2.0e-246





Description







pir:[LN:S44188] [AC:S44188] [PN:alpha-glucosidase,]


[CL:alpha-glucosidase:alpha-amylase core homology] [OR:Staphylococcus


xylosus] [EC:3.2.1.20] [DB:pir2] >gp:[GI:g474177] [LN:SXMALRAG] [AC:X78853]


[PN:alpha-D-1,4-glucosidase] [GN:malA] [OR:Staphylococcus xylosus]


[DB:genpept-bct1] [EC:3.2.1.20] [DE:S. xylosus malR gene and malA gene.]


[LE:1454] [RE:3103] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23626383_f3_761
311
4083
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23626425_c1_1042
312
4084
1056
351
763
1.0e-75





Description







pir:[LN:S72490] [AC:S72490:I39765] [PN:N-acetyl-gamma-glutamyl-phosphate


reductase,] [GN:argC] [CL:N-acetyl-gamma-glutamyl-phosphate reductase]


[OR:Bacillus stearothermophilus] [EC:1.2.1.38] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23642942_c1_1012
313
4085
696
231
142
3.6e-07





Description







pir:[LN:B71609] [AC:B71609] [PN:hypothetical protein PFB0680w] [GN:PFB0680w]


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845248] [LN:AE001410]


[AC:AE001410:AE001362] [PN:hypothetical protein] [GN:PFB0680w]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 47 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:10507:10754:12646]


[RE:10567:12528:12807] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23703452_c1_1037
314
4086
1509
502
1808
1.9e-186





Description







sp:[LN:GCS2_BACSU] [AC:P54377] [GN:YQHK] [OR:BACILLUS SUBTILIS] [EC:1.4.4.2]


[DE:PROTEIN)] [SP:P54377] [DB:swissprot] >pir:[LN:B69959] [AC:B69959]


[PN:glycine dehydrogenase homolog yqhK] [GN:yqhK] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1013227:g1303892] [LN:BACJH642] [AC:D84432:D82370]


[PN:YqhK] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2


PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region


containing skin element.] [LE:172729] [RE:174195] [DI:direct]


>gp:[GI:e1185723:g2634889] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqhK]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


glycine dehydrogenase] [SP:P54377] [LE:149426] [RE:150892] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23707890_c2_1322
315
4087
240
79
123
6.9e-08





Description







pir:[LN:A69931] [AC:A69931] [PN:hypothetical protein yozE] [GN:yozE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185439:g2634360] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yozE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [LE:137942] [RE:138166] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2381885_c1_988
316
4088
1272
423
1066
8.1e-108





Description







pir:[LN:E69765] [AC:E69765:I39896:I39895] [PN:branched chain amino acids


transporter homolog ycsG] [GN:ycsG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182373:g2632707] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ycsG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to 611850.] [NT:alternate gene


name: ycsH; similar to branched] [LE:54666] [RE:55826] [DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23836052_f2_497
317
4089
849
282
392
2.1e−36










Description


sp:[LN:PROI_BACSU] [AC:P54552] [GN:YQJO] [OR:BACILLUS SUBTILIS]


[DE:PYRROLINE-5-CARBOXYLATE REDUCTASE HOMOLOG 2] [SP:P54552] [DB:swissprot]


>pir:[LN:G69964] [AC:G69964] [PN:pyrroline-5-carboxylate reductase homolog


yqjO] [GN:yqjO] [CL:pyrroline-5-carboxylate reductase] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013301:g1303966] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqjO] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:245663] [RE:246499]


[DI:complement] >gp:[GI:e1185649:g2634815] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to pyrroline-5-carboxylate reductase]


[SP:P54552] [LE:77120] [RE:77956] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23850302_c3_1369
318
4090
2694
897
2695
1.9e−280










Description


sp:[LN:SYA_BACSU] [AC:O34526] [GN:ALAS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.7]


[DE:ALANYL-TRNA SYNTHETASE, (ALANINE--TRNA LIGASE) (ALARS)] [SP:O34526]


[DB:swissprot] >pir:[LN:A69584] [AC:A69584] [PN:alanine--tRNA ligase,


alaS:alanyl-tRNA synthetase] [GN:alaS] [CL:alanine--tRNA ligase]


[OR:Bacillus subtilis] [EC:6.1.1.7] [DB:pir2] >gp:[GI:e1183970:g2635186]


[LN:BSUB0014] [AC:Z99117:AL009126] [PN:alanyl-tRNA synthetase] [GN:alaS]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.7] [DE:Bacillus subtilis


complete genome (section 14 of 21):from 2599451 to 2812870.] [SP:O34526]


[LE:197994] [RE:200630] [DI:complement] >gp:[GI:e1183988:g2635204]


[LN:BSUB0015] [AC:Z99118:AL009126] [PN:alanyl-tRNA synthetase] [GN:alaS)


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.7] [DE:Bacillus subtilis


complete genome (section 15 of 21):from 2795131 to 3013540.] [SP:034526]


[LE:2314] [RE:4950] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23884692_c3_1415
319
4091
366
121
217
7.5e−18










Description


sp:[LN:YQHY_BACSU] [AC:P54519] [GN:YQHY] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 14.7 KD PROTEIN IN ACCC-FOLD INTERGENIC REGION] [SP:P54519]


[DB:swissprot] >pir:[LN:E69960] [AC:E69960] [PN:conserved hypothetical


protein yqhY] [GN:yqhY] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013249:g1303914] [LN:BACJH642] [AC:D84432:D82370] [PN:YqhY]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:189273] [RE:189680] [DI:direct]


>gp:[GI:e1185701:g2634867] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqhY]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


hypothetical proteins from B. subtilis] [SP:P54519] [LE:133941] [RE:134348]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23912502_f2_605
320
4092
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_23964011_f2_352
321
4093
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24042212_c3_1403
322
4094
498
165
72
0.034










Description


sp:[LN:CMG3_BACSU] [AC:P25955] [GN:COMGC:COMG3] [OR:BACILLUS SUBTILIS]


[DE:COMG OPERON PROTEIN 3 PRECURSOR] [SP:P25955] [DB:swissprot]


>pir:[LN:D30338] [AC:D30338:A35133:D69603] [PN:exogenous DNA-binding


protein comGC:comG operon protein 3] [GN:comGC] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g142708] [LN:BACCOMGA] [AC:M29691:M22854] [GN:comG3]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain 168) (clone:pED4) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis (clone pED4) comG-(1, 2, 3, 4, 5, 6, and


7) proteins incomG operon, complete cds.] [LE:3405] [RE:3701] [DI:direct]


>gp:[GI:d1013214:g1303879] [LN:BACJH642] [AC:D84432:D82370] [PN:ComGC]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:161635] [RE:161931] [DI:direct]


>gp:[GI:e1185739:g2634905] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:comGC]


[FN:exogenous DNA-binding (competence)] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P25955] [LE:161690] [RE:161986] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24071068_f1_186
323
4095
399
132
308
1.7e−27










Description


sp:[LN:YQHL_BACSU] [AC:P54510] [GN:YQHL] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 14.6 KD PROTEIN IN GCVT-SPOIIIAA INTERGENIC REGION]


[SP:P54510] [DB:swissprot] >pir:[LN:C69959] [AC:C69959] [PN:glpE protein


homolog yqhL] [GN:yqhL] [CL:glpE protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013228:g1303893] [LN:BACJH642] [AC:D84432:D82370] [PN:YqhL]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:174230] [RE:174610] [DI:complement]


>gp:[GI:e1185722:g2634888] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqhL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


hypothetical proteins] [SP:P54510] [LE:149011] [RE:149391] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24094090_c1_986
324
4096
957
318
927
4.4e−93










Description


pir:[LN:G69979] [AC:G69979] [PN:proteinase homolog yrrN] [GN:yrrN]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183965:g2635181] [LN:BSUB0014]


[AC:Z99117:AL009126] [GN:yrrN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 14 of 21):


from 2599451 to 2812870.] [NT:similar to protease] [LE:193967] [RE:194896]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24100715_c3_1422
325
4097
1035
344
888
5.9e−89










Description


sp:[LN:ODBA_BACSU] [AC:P37940] [GN:BFMBAA:BFMB1A] [OR:BACILLUS SUBTILIS]


[EC:1.2.4.4] [DE:(BCKDH E1-ALPHA)] [SP:P37940] [DB:swissprot]


>pir:[LN:C69593] [AC:C69593:S32486] [PN:3-methyl-2-oxobutanoate


dehydrogenase (lipoamide), E1 alpha chain bfmBAA:branched-chain alpha-oxo


acid dehydrogenase E1 alpha chain] [GN:bfmBAA] [CL:pyruvate dehydrogenase


(lipoamide) alpha chain:thiamine pyrophosphate-binding domain homology]


[OR:Bacillus subtilis] [EC:1.2.4.4] [DB:pir2] >gp:[GI:g142611]


[LN:BACBRANCH] [AC:M97391:M96937] [PN:branched chain alpha-keto acid


dehydrogenase] [OR:Bacillus subtilis] [SR:Bacillus subtilis DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis branched chain alpha-keto acid


dehydrogenase E1-alpha, branched chain alpha-keto acid dehydrogenase E1-beta,


and branched chain alpha-keto acid dehydrogenase E2, complete cds.] [LE:216]


[RE:1208] [DI:direct] >gp:[GI:d1013277:g1303942] [LN:BACJH642]


[AC:D84432:D82370] [PN:BfmBAA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:219562] [RE:220554]


[DI:direct] >gp:[GI:e1185673:g2634839] [LN:BSUB0013] [AC:Z99116:AL009126]


[PN:branched-chain alpha-keto acid dehydrogenase E1] [GN:bfmBAA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.2.4.4] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:alternate


gene name:bfmB1a] [SP:P37940] [LE:103065] [RE:104057] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24104702_c1_1109
326
4098
30612
10, 20
618
1.1e−54










Description


gp:[GI:g1041785] [LN:PYU36927] [AC:U36927] [PN:rhoptry protein]


[FN:erythrocyte invasion and possible binding] [OR:Plasmodium yoelii]


[DB:genpept-inv1] [DE:Plasmodium yoelii rhoptry protein gene, partial cds.]


[LE:<1] [RE:7206] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24117777_f3_858
327
4099
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24225000_c1_1152
328
4100
651
216
365
1.6e−33










Description


gp:[GI:g2194195] [LN:SGU61158] [AC:U61158] [PN:GdmF] [GN:gdmF]


[OR:Staphylococcus gallinarum] [DB:genpept-bct1] [DE:Staphylococcus


gallinarum Tue3928 GdmF (gdmF), putative membrane protein (gdmH), ABC


transporter (gdmT), and antibiotic gallidermin precursor (gdmA) genes,


complete cds, putative membrane protein(gdmE) and modifying enzyme (gdmB)


genes, partial cds.] [NT:proposed ABC transporter subunit (ATP-binding]


[LE:179] [RE:874] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24226412_c3_1436
329
4101
570
189
437
3.7e−41










Description


sp:[LN:YQKG_BACSU] [AC:P54570] [GN:YQKG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 21.0 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION] [SP:P54570]


[DB:swissprot] >pir:[LN:A69967] [AC:A69967] [PN:conserved hypothetical


protein yqkG] [GN:yqkG] [CL:yffH protein:mutT domain homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013319:g1303984] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqkG] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:260584] [RE:261141]


[DI:direct] >gp:[GI:e1185630:g2634796] [LN:BSUB0013] [AC:Z99116:AL009126]


[GN:yqkG] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 13 of 21):from 2395261 to 2613730.]


[NT:similar to hypothetical proteins] [SP:P54570] [LE:62478] [RE:63035]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24226635_f2_499
330
4102
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24228452_f3_942
331
4103
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24229515_c3_1423
332
4104
1170
389
980
1.1e−98










Description


sp:[LN:YQJE_BACSU] [AC:P54542] [GN:YQJE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 39.7 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION] [SP:P54542]


[DB:swissprot] >pir:[LN:E69963] [AC:E69963] [PN:tripeptidase homolog yqjE]


[GN:yqjE] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013291:g1303956]


[LN:BACJH642] [AC:D84432:D82370] [PN:YqjE] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:232856] [RE:233971] [DI:direct] >gp:[GI:e1185659:g2634825] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to tripeptidase] [SP:P54542] [LE:89648]


[RE:90763] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24229805_c3_1376
333
4105
1386
461
1133
6.4e−115










Description


pir:[LN:A69581] [AC:A69581] [PN:acetyl-CoA carboxylase (biotin carboxylase


subunit) accC] [GN:accC] [CL:biotin carboxylase:biotin carboxylase


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013248:g1303913]


[LN:BACJH642] [AC:D84432:D82370] [PN:YqhX] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:187900] [RE:189252] [DI:direct] >gp:[GI:e1185702:g2634868] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:acetyl-CoA carboxylase subunit (biotin] [GN:accC]


[FN:long-chain fatty acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.4.1.2] [DE:Bacillus subtilis complete genome


(section 13 of 21):from 2395261 to 2613730.] [NT:alternate gene name:yqhX]


[SP:P49787] [LE:134369] [RE:135721] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24257658_f1_309
334
4106
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24260061_c3_1353
335
4107
348
115
214
1.6e−17










Description


sp:[LN:YSXB_BACSU] [AC:P26942:Q45629] [GN:YSXB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 12.3 KD PROTEIN IN RPLU-RPMA INTERGENIC REGION (ORF X)]


[SP:P26942:Q45629] [DB:swissprot] >pir:[LN:S18440] [AC:S18440:D21895:B69987]


[PN:conserved hypothetical protein ysxB] [GN:ysxB ] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g40174] [LN:BSSPOIVFO] [AC:X59528:S61796] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis spoIVFA, spoIVFB, L20, orfX and


L24 genes.] [NT:ORF X] [SP:P26942] [LE:2270] [RE:2608] [DI:direct]


>gp:[GI:e1184044:g2635260] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:ysxB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21):from 2795131 to 3013540.] [NT:similar to


hypothetical proteins] [SP:P26942] [LE:59308] [RE:59646] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24261692_c3_1518
336
4108
1902
633
995
2.7e−100










Description


pir:[LN:D69907] [AC:D69907] [PN:hypothetical protein yojO] [GN:yojO]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185410:g2634331] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yojO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [LE:110914] [RE:112899] [DI:complement]


>gp:[GI:g3169331] [LN:AF026147] [AC:AF026147] [PN:YojO] [GN:yojO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


YojA (yojA), YojB (yojB), YojC (yojC), YojD (yojD), YojE (yojE), YojF (yojF),


YojG (yojG), YojH (yojH), YojI (yojI), YojJ (yojJ), YojK (yojK), YojL (yojL),


YojM (yojM), YojN (yojN), and YojO (yojO) genes, complete cds; and OdhA


(odhA) gene, partial cds.] [LE:12366] [RE:14351] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24266502_f3_675
337
4109
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24274192_f2_386
338
4110
411
136
233
1.5e−19










Description


sp:[LN:EBSB_ENTFA] [AC:P36921] [OR:ENTEROCOCCUS FAECALIS] [SR:,STREPTOCOCCUS


FAECALIS] [DE:CELL WALL ENZYME EBSB] [SP:P36921] [DB:Swissprot]


>pir:[LN:B49939] [AC:B49939] [PN:ebsB protein] [CL:Enterococcus faecalis


ebsB protein] [OR:Enterococcus faecalis] [DB:pir2] >gp:[GI:g388108]


[LN:ENEEBSA] [AC:L23802] [PN:cell wall enzyme] [GN:ebsB] [OR:Enterococcus


faecalis] [SR:Enterococcus faecalis (strain OG1SSp) DNA] [DB:genpept-bct2]


[DE:Enterococcus faecalis pore forming, cell wall enzyme, regulatory, and


dehydroquinase homologue proteins (ebsA, ebsB, ebsC, and ebsD)genes, complete


cds with repeat region.] [NT:putative] [LE:734] [RE:1141] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24275927_f2_622
339
4111
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24306263_c1_1034
340
4112
297
98










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24410300_c3_1439
341
4113
759
252
686
1.5e−67










Description


sp:[LN:RLUB_BACSU] [AC:P35159] [GN:RLUB] [OR:BACILLUS SUBTILIS]


[EC:4.2.1.70] [DE:(PSEUDOURIDYLATE SYNTHASE) (URACIL HYDROLYASE)]


[SP:P35159] [DB:swissprot] >pir:[LN:S45555] [AC:S45555:A69943]


[PN:conserved hypothetical protein ypuL] [GN:ypuL] [CL:conserved


hypothetical protein HI1243] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g410137] [LN:BACDIA] [AC:L09228] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain 168, sub_species Marburg) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis spoVA to serA region.] [NT:ORFX13] [LE:17440]


[RE:18129] [DI:direct] >gp:[GI:e1185585:g2634751] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:ypuL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to hypothetical proteins] [SP:P35159]


[LE:25454] [RE:26143] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24470317_c1_1011
342
4114
1020
339
1246
6.8e−127










Description


sp:[LN:YQFA_BACSU] [AC:P54466] [GN:YQFA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 35.6 KD PROTEIN IN RPSU-PHOH INTEREGENIC REGION]


[SP:P54466] [DB:swissprot] >pir:[LN:A69953] [AC:A69953] [PN:hypothetical


protein yqfA] [GN:yqfA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013152:g1303817] [LN:BACJH642] [AC:D84432:D82370] [PN:YqfA]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:101161] [RE:102156] [DI:direct]


>gp:[GI:e1183768:g2634984] [LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqfA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 14 of 21):from 2599451 to 2812870.] [SP:P54466]


[LE:17274] [RE:18269] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24480275_c3_1499
343
4115
990
329
602
1.2e−58










Description


pir:[LN:A69653] [AC:A69653] [PN:transmembrane lipoprotein lplB] [GN:lplB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182690:g2633024] [LN:BSUB0004]


[AC:Z99107:AL009126] [PN:transmembrane lipoprotein] [GN:lplB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [LE:179900] [RE:180856] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24486330_c1_980
344
4116
693
230
321
7.2e−29










Description


pir:[LN:H69978] [AC:H69978] [PN:conserved hypothetical protein yrrB]


[GN:yrrB] [CL:tetratricopeptide repeat homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183978:g2635194] [LN:BSUB0014] [AC:Z99117:AL009126]


[GN:yrrB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 14 of 21):from 2599451 to 2812870.]


[NT:similar to hypothetical proteins] LE:208527] [RE:209147]


[DI:complement] >gp:[GI:e1183996:g2635212] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:yrrB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to hypothetical proteins] [LE:12847]


[RE:13467] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24489062_f1_1
345
4117
126
41
72
0.017










Description


pir:[LN:D70083] [AC:D70083] [PN:hypothetical protein yxzC] [GN:yxzC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184645:g2636466] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yxzC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [LE:21405] [RE:21773] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24511676_c1_1140
346
4118
246
81
251
4.3e−21










Description


sp:[LN:ODO2_BACSU] [AC:P16263] [GN:ODHB:CITM] [OR:BACILLUS SUBTILIS]


[EC:2.3.1.61] [DE:DEHYDROGENASE COMPLEX, (E2)] [SP:P16263] [DB:swissprot]


>pir:[LN:B32879] [AC:B32879:F69668] [PN:dihydrolipoamide


S-succinyltransferase, odhB:2-oxoglutarate dehydrogenase complex E2


component odhB:dihydrolipoamide transsuccinylase odhB] [GN:odhB]


[CL:dihydrolipoamide acetyltransferase:lipoyl/biotin-binding homology]


[OR:Bacillus subtilis] [EC:2.3.1.61] [DB:pir2] >gp:[GI:g143268]


[LN:BACODHAB] [AC:M27141] [OR:Bacillus subtilis] [SR:B. subtilis (strain


3G18) DNA] [DB:genpept-bct1] [DE:B. subtilis 2-oxoglutarate dehydrogenase


(odhA) gene 3′ end, and dihydrolipoamide transsuccinylase (odhB) gene,


complete cds.] [NT:dihydrolipoamide transsuccinylase (odhB; EC] [LE:899]


[RE:2152] [DI:direct] >gp:[GI:e1185408:g2634329] [LN:BSUB0011]


[AC:Z99114:AL009126] [PN:2-oxoglutarate dehydrogenase complex] [GN:odhB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.3.1.61] [DE:Bacillus subtilis


complete genome (section 11 of 21):from 2000171 to 2207900.] [NT:alternate


gene name:citM] [SP:P16263] [LE:106590] [RE:107843] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24610877_c1_1035
347
4119
519
172
226
8.4e−19










Description


sp:[LN:AROK_LACLA] [AC:P43906] [GN:AROK] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:2.7.1.71] [DE:SHIKIMATE KINASE,


(SK)] [SP:P43906] [DB:swissprot] >pir:[LN:S52581] [AC:S52581] [PN:shikimate


kinase,] [CL:shikimate kinase:shikimate kinase homology] [OR:Lactococcus


lactis] [EC:2.7.1.71] [DB:pir2] >gp:[GI:g683584] [LN:LLTYRAPH] [AC:X78413]


[PN:shikimate kinase] [GN:aroK] [OR:Lactococcus lactis] [DB:genpept-bct1]


[EC:2.7.1.71] [DE:L. lactis tyrA, aroA, aroK and pheA genes.] [SP:P43906]


[LE:2605] [RE:3093] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24615915_c3_1522
348
4120
240
79
275
5.4e−24










Description


gp:[GI:g2226349] [LN:AF003593] [AC:AF003593] [PN:CspC] [GN:cspC]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus CspC


(cspC) gene, complete cds.] [NT:similar to major cold-shock protein]


[LE:444] [RE:644] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24617177_c3_1433
349
4121
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24640937_c2_1229
350
4122
498
165










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24647187_c1_1038
351
4123
126
41
98
8.8e−05










Description


gp:[GI:g1022725] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp:[GI:g295162] [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) gene and unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24650016_c3_1478
352
4124
417
138
155
2.8e−11










Description


sp:[LN:YPSB_BACSU] [AC:P50839] [GN:YPSB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 11.6 KD PROTEIN IN COTD-KDUD INTERGENIC REGION] [SP:P50839]


[DB:swissprot] >pir:[LN:E69941] [AC:E69941] [PN:hypothetical protein ypsB]


[GN:ypsB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1146182]


[LN:BACPONAYPP] [AC:L47838] [GN:ypsB] [FN:hypothetical] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis (clone YAC15-6B) ponA


gene, yppBCDEFG genes, ypqAE genes, yprAB genes, cotD gene, ypsABC genes,


rnaP gene, yptAgene, ypuA gene, kduDI genes, kdgRKAT genes, ypwA gene,


complete cds's.] [NT:putative] [LE:12192] [RE:12488] [DI:direct]


>gp:[GI:e1183664:g2634637] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypsB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [SP:P50839]


[LE:135481] [RE:135777] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24650252_f3_731
353
4125
633
210
970
1.2e−97










Description


gp:[GI:e1357086:g3955030] [LN:SAU17795] [AC:Y17795] [PN:unknown] [GN:prfA]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus prfA,


pbp2 genes.] [LE:731] [RE:1357] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24658562_f3_926
354
4126
1287
428
1475
3.7e−151










Description


pir:[LN:D69981] [AC:D69981] [PN:conserved hypothetical protein yrvN]


[GN:yrvN] [CL:Haemophilus influenzae conserved hypothetical protein HI1590]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183983:g2635199] [LN:BSUB0014]


[AC:Z99117:AL009126] [GN:yrvN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 14 of 21):


from 2599451 to 2812870.] [NT:similar to hypothetical proteins] [LE:212152]


[RE:213417] [DI:direct] >gp:[GI:e1184001:g2635217] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:yrvN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to hypothetical proteins] [LE:16472]


[RE:17737] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24797827_c3_1514
355
4127
1857
618
1242
1.8e−126










Description


sp:[LN:ODO1_BACSU] [AC:P23129] [GN:ODHA:CITK] [OR:BACILLUS SUBTILIS]


[EC:1.2.4.2] [DE:KETOGLUTARATE DEHYDROGENASE)] [SP:P23129] [DB:swissprot]


>pir:[LN:A32879] [AC:S25295:A32879:E69668:S14544] [PN:oxoglutarate


dehydrogenase (lipoamide),] [GN:odhA] [CL:oxoglutarate dehydrogenase


(lipoamide):thiamine pyrophosphate-binding domain homology] [OR:Bacillus


subtilis] [EC:1.2.4.2] [DB:pir2] >gp:[GI:g40003] [LN:BSODHA]


[AC:X54805:S43328] [PN:oxoglutarate dehydrogenase (NADP+)] [GN:odhA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis odhA gene for


2-oxoglutarate dehydrogenase.] [SP:P23129] [LE:291] [RE:3104] [DI:direct]


>gp:[GI:e1185409:g2634330] [LN:BSUB0011] [AC:Z99114:AL009126]


[PN:2-oxoglutarate dehydrogenase (E1 subunit)] [GN:odhA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:1.2.4.2] [DE:Bacillus subtilis complete


genome (section 11 of 21):from 2000171 to 2207900.] NT:alternate gene name:


citK] [SP:P23129] [LE:107873] [RE:110686] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24800461_c1_1138
356
4128
231
76
235
1.7e−18










Description


sp:[LN:ODO1_BACSU] [AC:P23129] [GN:ODHA:CITK] [OR:BACILLUS SUBTILIS]


[EC:1.2.4.2] [DE:KETOGLUTARATE DEHYDROGENASE)] [SP:P23129] [DB:swissprot]


>pir:[LN:A32879] [AC:S25295:A32879:E69668:S14544] [PN:oxoglutarate


dehydrogenase (lipoamide),] [GN:odhA] [CL:oxoglutarate dehydrogenase


(lipoamide):thiamine pyrophosphate-binding domain homology] [OR:Bacillus


subtilis] [EC:1.2.4.2] [DB:pir2] >gp:[GI:g40003] [LN:BSODHA]


[AC:X54805:S43328] [PN:oxoglutarate dehydrogenase (NADP+)] [GN:odhA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis odhA gene for


2-oxoglutarate dehydrogenase.] [SP:P23129] [LE:291] [RE:3104] [DI:direct]


>gp:[GI:e1185409:g2634330] [LN:BSUB0011] [AC:Z99114:AL009126]


[PN:2-oxoglutarate dehydrogenase (E1 subunit)] [GN:odhA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:1.2.4.2] [DE:Bacillus subtilis complete


genome (section 11 of 21):from 2000171 to 2207900.] [NT:alternate gene name:


citK] [SP:P23129] [LE:107873] [RE:110686] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24807790_c1_1048
357
4129
909
302
687
1.2e−67










Description


Sp:[LN:ISPA_BACST] [AC:Q08291] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:2.5.1.10] [DE:(FPP SYNTHASE)] [SP:Q08291] [DB:swissprot]


>pir:[LN:JX0257] [AC:JX0257]


[PN:geranyltranstransferase,:farnesyl-diphosphate synthase]


[CL:geranyltranstransferase] [OR:Bacillus stearothermophilus] [EC:2.5.1.10]


[DB:pir2] >gp:[GI:d1003054:g391610] [LN:BACFDPS] [AC:D13293] [PN:farnesyl


diphosphate synthase] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (strain:ATCC10149) DNA] [DB:genpept-bct1] [EC:2.5.1.10]


[DE:B. stearothermophilus DNA for farnesyl diphosphate synthase, complete


cds.] [LE:85] [RE:978] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24823311_c3_1404
358
4130
210
69
76
0.0065










Description


pir:[LN:B21124] [AC:B21124] [PN:Bkm-like sex-determining region


hypothetical protein CS314] [GN:Bkm] [OR:Drosophila melanogaster] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24886562_f3_771
359
4131
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_24886587_c2_1175
360
4132
2448
815
1981
2.3e−207










Description


pir:[LN:A69979] [AC:A69979] [PN:conjugation transfer protein homolog yrrC]


[GN:yrrC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183977:g2635193]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrrC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21):from 2599451 to 2812870.] [NT:similar to conjugation transfer


protein] [LE:206106] [RE:208502] [DI:complement] >gp:[GI:e1183995:g2635211]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:yrrC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21):from 2795131 to 3013540.] [NT:similar to conjugation transfer


protein] [LE:10426] [RE:12822] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2542188_c1_1026
361
4133
270
89










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25423425_f2_337
362
4134
210
69










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25428378_f2_336
363
4135
228
75










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25502217_c2_1157
364
4136
615
204
410
2.7e−38










Description


sp:[LN:RUVA_BACSU] [AC:O05392] [GN:RUVA] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


HOLLIDAY JUNCTION DNA HELICASE RUVA] [SP:O05392] [DB:swissprot]


>pir:[LN:E69702] [AC:E69702] [PN:Holliday junction DNA helicase ruvA]


[GN:ruvA] [CL:holliday junction DNA helicase ruvA] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1184023:g2635239] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:Holliday junction DNA helicase] [GN:ruvA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [SP:O05392] [LE:40296] [RE:40901] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25595186_c2_1177
365
4137
651
216
736
7.6e−73










Description


pir:[LN:G69728] [AC:G69728] [PN:uridine kinase udk] [GN:udk] [CL:uridine


kinase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183963:g2635179]


[LN:BSUB0014] [AC:Z99117:AL009126] [PN:uridine kinase] [GN:udk]


[FN:pyrimidine salvage] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.7.1.48] [DE:Bacillus subtilis complete genome (section 14 of 21):from


2599451 to 2812870.] [LE:192038] [RE:192673] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25598818_c3_1420
366
4138
1692
563
1195
1.7e−121










Description


sp:[LN:RECN_BACSU] [AC:P17894:P19671] [GN:RECN] [OR:BACILLUS SUBTILIS]


[DE:DNA REPAIR PROTEIN RECN (RECOMBINATION PROTEIN N)] [SP:P17894:P19671]


[DB:swissprot] >pir:[LN:B35128] [AC:B35128:PS0054:H69690] [PN:DNA repair


and genetic recombination protein recN] [GN:recN] [CL:recN protein]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013258:g1303923] [LN:BACJH642]


[AC:D84432:D82370] [PN:RecN] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:197319] [RE:199049]


[DI:direct] >gp:[GI:g143402] [LN:BACRECN] [AC:M30297] [OR:Bacillus subtilis]


[SR:B. subtilis (strain 168) DNA] [DB:genpept-bct1] [DE:B. subtilis


recombination and sporulation protein (recN, spoIVB)genes, complete cds,


arginine hydroximate resistance (ahrC) gene, 3′ end.] [NT:recombination


protein (ttg start codon)] [LE:131] [RE:1861] [DI:direct]


>gp:[GI:e1185692:g2634858] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:recN]


[FN:DNA repair and genetic recombination] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P17894] [LE:124572] [RE:126302] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25652217_c3_1470
367
4139
348
115










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25672337_c1_1016
368
4140
780
259
371
3.6e−34










Description


sp:[LN:YQXN_BACSU] [AC:P42095] [GN:YQXN:YQFI] [OR:BACILLUS SUBTILIS]


[DE:(ORF3)] [SP:P42095] [DB:swissprot] >pir:[LN:H69968] [AC:H69968]


[PN:conserved hypothetical protein yqxN] [GN:yqxN] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1013162:g1303827] [LN:BACJH642] [AC:D84432:D82370]


[PN:YqfI] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2


PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region


containing skin element.] [LE:109891] [RE:110658] [DI:direct]


>gp:[GI:e1185794:g2634960] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqxN]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:alternate


gene name:yqfI; similar to hypothetical] [SP:P42095] [LE:212962]


[RE:213729] [DI:complement] >gp:[GI:e1183758:g2634974] [LN:BSUB0014]


[AC:Z99117:AL009126] [GN:yqxN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 14 of 21):


from 2599451 to 2812870.] [NT:alternate gene name:yqfI; similar to


hypothetical] [SP:P42095] [LE:8772] [RE:9539] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_25680218_c2_1201
369
4141
726
241
425
6.8e−40










Description


sp:[LN:YQEZ_BACSU] [AC:P54465] [GN:YQEZ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 46.5 KD PROTEIN IN RPSU-PHOH INTEREGENIC REGION]


[SP:P54465] [DB:swissprot] >pir:[LN:H69952] [AC:H69952 ] [PN:hypothetical


protein yqeZ] [GN:yqeZ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013151:g1303816] [LN:BACJH642] [AC:D84432:D82370] [PN:YqeZ]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:99826] [RE:101139] [DI:direct] >gp:[GI:e1183769:g2634985]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqeZ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21):from 2599451 to 2812870.] [SP:P54465] [LE:18291] [RE:19604]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26058467_c1_1064
370
4142
213
70
119
9.1e−07










Description


gp:[GI:g861340] [LN:CELE04F6] [AC:U28943] [GN:E04F6.7] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid E04F6.] [NT:similar to ribitol


dehydrogenase] [LE:20096:20706:20893] [RE:20659:20814:21152]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26203942_c3_1388
371
4143
630
209
636
3.0e−62










Description


pir:[LN:A69969] [AC:A69969] [PN:conserved hypothetical protein yqzB]


[GN:yqzB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185791:g2634957]


[LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqzB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


13 of 21):from 2395261 to 2613730.] [NT:similar to hypothetical proteins]


[LE:208975] [RE:209613] [DI:complement] >gp:[GI:e1183755:g2634971]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqzB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21):from 2599451 to 2812870.] [NT:similar to hypothetical proteins]


[LE:4785] [RE:5423] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26209425_c1_1022
372
4144
1068
355
1672
4.9e−172










Description


sp:[LN:RPSD_STAAU] [AC:P26766] [GN:RPOD:PLAC] [OR:STAPHYLOCOCCUS AUREUS]


[DE:RNA POLYMERASE SIGMA FACTOR RPOD] [SP:P26766] [DB:swissprot]


>pir:[LN:S34442] [AC:S34442] [PN:transcription initiation factor sigma


plaC] [GN:plaC] [CL:transcription initiation factor sigma 43:transcription


initiation factor sigma katF homology:transcription initiation factor sigma


region 1 homology] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g153069]


[LN:STAPLAC] [AC:M63177] [PN:sigma factor] [GN:plaC] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain SA20) DNA] [DB:genpept-bct1]


[DE:S. aureus sigma factor (plaC) gene, complete cds.] [LE:820] [RE:1926]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26212501_c3_1394
373
4145
852
283
797
2.6e−79










Description


gp:[GI:g5019735] [LN:AF104349] [AC:AF104349] [PN:hydrophobic membrane


protein ZurM] [GN:zurM] [OR:Listeria monocytogenes] [DB:genpept-bct2]


[DE:Listeria monocytogenes zinc-like uptake operon, complete sequence.]


[LE:860] [RE:1747] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26225463_c1_1070
374
4146
741
246
821
7.4e−82










Description


sp:[LN:RESD_BACSU] [AC:P35163] [GN:RESD] [OR:BACILLUS SUBTILIS]


[DE:TRANSCRIPTIONAL REGULATORY PROTEIN RESD] [SP:P35163] [DB:swissprot]


>pir:[LN:G69691] [AC:G69691:S45559] [PN:two-component response regulator


involved in aerobic and anaer resD] [GN:resD] [CL:ompR protein:response


regulator homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g410141]


[LN:BACDIA] [AC:L09228] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain


168, sub_species Marburg) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis spoVA


to serA region.] [NT:ORFX17] [LE:21706] [RE:22428] [DI:direct]


>gp:[GI:e1185581:g2634747] [LN:BSUB0013] [AC:Z99116:AL009126]


[PN:two-component response regulator] [GN:resD] [FN:activation role in


global regulation of aerobic] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 13 of 21):from 2395261 to


2613730.] [NT:alternate gene name:ypxD] [SP:P35163] [LE:21155] [RE:21877]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26251577_c1_994
375
4147
354
117
372
2.8e−34










Description


sp:[LN:YQEL_BACSU] [AC:P54457] [GN:YQEL] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 13.3 KD PROTEIN IN AROD-COMER INTERGENIC REGION]


[SP:P54457] [DB:swissprot] >pir:[LN:H69951] [AC:H69951] [PN:ybeB protein


homolog yqeL] [GN:yqeL] [CL:Escherichia coli ybeB protein] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013128:g1303793] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqeL] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:76417] [RE:76773]


[DI:direct] >gp:[GI:e1183792:g2635008] [LN:BSUB0014] [AC:Z99117:AL009126]


[GN:yqeL] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 14 of 21):from 2599451 to 2812870.]


[NT:similar to hypothetical proteins] [SP:P54457] [LE:42657] [RE:43013]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26259657_c1_1051
376
4148
1425
474
1155
3.0e−117










Description


sp:[LN:DLD2_BACSU] [AC:P54533] [GN:BFMBC] [OR:BACILLUS SUBTILIS]


[EC:1.8.1.4] [DE:DEHYDROGENASE) (LPD-VAL)] [SP:P54533] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26306713_c2_1332
377
4149
912
303
580
2.6e−56










Description


pir:[LN:S72642] [AC:S72642] [PN:probable ABC-type transport protein xynB]


[GN:xynB] [OR:Thermoanaerobacterium thermosulfurigenes] [DB:pir2]


>gp:[GI:g1255237] [LN:TTU50952] [AC:U50952] [PN:XynB] [GN:xynB]


[OR:Thermoanaerobacterium thermosulfurigenes] [DB:genpept-bct1]


[DE:Thermoanaerobacterium thermosulfurigenes endoxylanase precursor (XynA)


and membrane component of an ABC transporter (XynB) genes, complete cds and


XynC (xynC) gene, partial cds.] [NT:Description:membrane component of an


ABC] [LE:454] [RE:1359] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26368950_c2_1264
378
4150
1380
459
744
4.7e−76










Description


sp:[LN:RECQ_BACSU] [AC:P50729] [GN:RECQ] [OR:BACILLUS SUBTILIS] [EC:3.6.1.-]


[DE:ATP-DEPENDENT DNA HELICASE RECQ,] [SP:P50729] [DB:swissprot]


>pir:[LN:A69691] [AC:A69691] [PN:ATP-dependent DNA helicase


homolog:ATP-dependent DNA helicase recQ] [GN:recQ] [CL:DEAD/H box helicase


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183747:g2634720]


[LN:BSUB0012] [AC:Z99115:AL009126] [PN:ATP-dependent DNA helicase] [GN:recQ]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.6.1.-] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [SP:P50729]


[LE:210616] [RE:212106] [DI:complement] >gp:[GI:e1185571:g2634737]


[LN:BSUB0013] [AC:Z99116:AL009126] [PN:ATP-dependent DNA helicase] [GN:recQ]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.6.1.-] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [SP:P50729]


[LE:10896] [RE:12386] [DI:complement] >gp:[GI:g1146200] [LN:BACSERA]


[AC:L47648] [PN:DNA or RNA helicase, DNA-dependent ATPase] [GN:recS] [FN:DNA


repair and homologous recombination] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis phosphoglycerate dehydrogenase


(serA), ypaA, ferredoxin (fer), ypbB, recS, ypbD, ypbE, ypbF, ypbG,


ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB, ypdC, spore cortexlytic


enzyme (sleB), ypeB, ypfA, ypfB, cytidine monophosphatekinase (cmk), ypfD,


ypgA, yphA, yphB, yphC, NAD+ dependent glycerol-3-phosphate dehydrogenase


(glyc), yphE and yphF genes, complete cds.] [NT:similar to Escherichia coli


recQ gene product;] [LE:4291] [RE:5781] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26384682_c1_1092
379
4151
1248
415
561
2.6e−54










Description


sp:[LN:YPIA_BACSU] [AC:P54389] [GN:YPIA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 48.3 KD PROTEIN IN QCRA-AROE INTERGENIC REGION] [SP:P54389]


[DB:swissprot] >pir:[LN:E69936] [AC:E69936] [PN:conserved hypothetical


protein ypiA] [GN:ypiA] [CL:tetratricopeptide repeat homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g1146224] [LN:BACYPIA] [AC:L47709] [GN:ypiA]


[FN:hypothetical] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis (clone YAC15-6B) ypiABF genes, qcrABC genes, ypjABCDEFGHI genes,


birA gene, panBCD genes, dinG gene, ypmB gene, aspB gene, asnS gene, dnaD


gene, nth gene and ypoC gene, complete cds's.] [NT:putative] [LE:348]


[RE:1619] [DI:direct] >gp:[GI:e1183704:g2634677] [LN:BSUB0012]


[AC:Z99115:AL009126] [GN:ypiA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 12 of 21):


from 2195541 to 2409220.] [NT:similar to hypothetical proteins] [SP:P54389]


[LE:170048] [RE:171319] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26597186_c1_1056
380
4152
444
147
544
1.7e−52










Description


sp:[LN:YQIW_BACSU] [AC:P54534] [GN:YQIW] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 16.2 KD PROTEIN IN BMRU-ANSR INTERGENIC REGION] [SP:P54534]


[DB:swissprot] >pir:[LN:E69962] [AC:E69962] [PN:conserved hypothetical


protein yqiW] [GN:yqiW] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013283:g1303948] [LN:BACJH642] [AC:D84432:D82370] [PN:YqiW]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:226148] [RE:226585] [DI:direct]


>gp:[GI:e1185667:g2634833] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqiW]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


hypothetical proteins from B. subtilis] [LE:97034] [RE:97471]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26600137_f2_493
381
4153
531
176
188
8.9e−15










Description


sp:[LN:YPUF_BACSU] [AC:P17617] [GN:YPUF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 21.0 KD PROTEIN IN RIBT-DACB INTERGENIC REGION (ORFX6)]


[SP:P17617] [DB:swissprot] >pir:[LN:S45548] [AC:S45548:E69942]


[PN:hypothetical protein ypuF] [GN:ypuF] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g410130] [LN:BACDIA] [AC:L09228] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain 168, sub_species Marburg) DNA] [DB:genpept-bct1]


[DEBacillus subtilis spoVA to serA regions.] [NT:ORFX6] [LE:12218]


[RE:12742] [DI:complement] >gp:[GI:g580916] [LN:BSRIB] [AC:X51510]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis riboflavin


biosynthesis operon ribG, ribB, ribA, ribH, and ribT genes.] [NT:ORF Y (AA


1–174)] [SP:P17617] [LE:5164] [RE:5688] [DI:complement]


>gp:[GI:e1185592:g2634758] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:ypuF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [SP:P17617]


[LE:30841] [RE:31365] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26752312_c3_1396
382
4154
171
56
229
4.0e−19










Description


sp:[LN:RL33_BACST] [AC:P23375] [GN:RPMG] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L33] [SP:P23375] [DB:swissprot] >pir:[LN:B48396]


[AC:B48396] [PN:ribosomal protein L33] [CL:Escherichia coli ribosomal


protein L33] [OR:Bacillus stearothermophilus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26754662_c3_1454
383
4155
672
223
514
2.5e−49










Description


sp:[LN:KCY_BACSU] [AC:P38493] [GN:CMK:JOFC] [OR:BACILLUS SUBTILIS]


[EC:2.7.4.14] [DE:(CMP KINASE)] [SP:P38493] [DB:swissprot] >pir:[LN:F69601]


[AC:F69601] [PN:cytidylate kinase cmk] [GN:cmk] [CL:cytidylate kinase cmk]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g533105] [LN:BSU11687] [AC:U11687]


[PN:unknown] [GN:jofC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis 168 jofA, jofB, MssA homolog (jofC) and ribosomal protein S1 homolog


(jofD) genes, complete cds, and joeB gene, partial cds.] [NT:similar to the


Escherichia coli mssA gene product] [LE:1744] [RE:2418] [DI:direct]


>gp:[GI:e1183734:g2634707] [LN:BSUB0012] [AC:Z99115:AL009126] [PN:cytidylate


kinase] [GN:cmk] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.4.14]


[DE:Bacillus subtilis complete genome (section 12 of 21):from 2195541 to


2409220.] [NT:alternate gene name:jofC, ypfC] [SP:P38493] [LE:199742]


[RE:200416] [DI:complement] >gp:[GI:e1185558:g2634724] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:cytidylate kinase] [GN:cmk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.4.14] [DE:Bacillus subtilis complete genome


(section 13 of 21):from 2395261 to 2613730.] [NT:alternate gene name:jofC,


ypfC] [SP:P38493] [LE:22] [RE:696] [DI:complement] >gp:[GI:g1146214]


[LN:BACSERA] [AC:L47648] [PN:cytidine monophosphate kinase] [GN:cmk]


[FN:cytidine diphosphate biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis phosphoglycerate dehydrogenase


(serA), ypaA, ferredoxin (fer), ypbB, recS, ypbD, ypbE, ypbF, ypbG,


ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB, ypdC, spore cortexlytic


enzyme (sleB), ypeB, ypfA, ypfB, cytidine monophosphatekinase (cmk), ypfD,


ypgA, yphA, yphB, yphC, NAD+ dependent glycerol-3-phosphate dehydrogenase


(glyc), yphE and yphF genes complete cds.] [NT:similar to Escherichia coli


smba supress; putative] [LE:15981] [RE:16655] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26754750_c2_1172
384
4156
1164
387
895
1.1e−89










Description


pir:[LN:E69981] [AC:E69981] [PN:NifS protein homolog homolog yrvO] [GN:yrvO]


[CL:nitrogen fixation protein nifS] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183981:g2635197] [LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrvO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 14 of 21):from 2599451 to 2812870.] [NT:similar to


NifS protein homolog] [LE:210475] [RE:211515] [DI:complement]


>gp:[GI:e1183999:g2635215] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:yrvO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21):from 2795131 to 3013540.] [NT:similar to


NifS protein homolog] [LE:14795] [RE:15835] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26772135_c1_1000
385
4157
996
331
555
1.1e−53










Description


sp:[LN:YQEN_BACSU] [AC:P54459] [GN:YQEN] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 40.5 KD PROTEIN IN COMEC-RPST INTERGENIC REGION]


[SP:P54459] [DB:swissprot] >pir:[LN:B69952] [AC:B69952] [PN:conserved


hypothetical protein yqeN] [GN:yqeN] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013134:g1303799] [LN:BACJH642] [AC:D84432:D82370] [PN:YqeN]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:82475] [RE:83518] [DI:direct] >gp:[GI:e1183786:g2635002]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yqeN] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21):from 2599451 to 2812870.] [NT:similar to hypothetical proteins]


[SP:P54459] [LE:35912] [RE:36955] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_26774062_c2_1268
386
4158
1332
443
1670
8.0e−172










Description


sp:[LN:YPHC_BACSU] [AC:P50743] [GN:YPHC] [OR:BACILLUS SUBTILIS] [DE:REGION]


[SP:P50743] [DB:swissprot] >pir:[LN:A69936] [AC:A69936] [PN:conserved


hypothetical protein yphC] [GN:yphC] [CL:Mycobacterium leprae probable


GTP-binding protein:translation elongation factor Tu homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1183729:g2634702] [LN:BSUB0012]


[AC:Z99115:AL009126] [GN:yphC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 12 of 21):


from 2195541 to 2409220.] [NT:similar to hypothetical proteins] [LE:193903]


[RE:195213] [DI:complement] >gp:[GI:g1146219] [LN:BACSERA] [AC:L47648]


[GN:yphC] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+


dependent glycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes, complete cds.] [NT:similar to Escherichia coli GTP-binding protein]


[LE:21184] [RE:22494] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000982_2756288_c2_1257
387
4159
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10000128_f2_399
388
4160
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10195942_c3_1056
389
4161
636
211
253
1.2e−21










Description


sp:[LN:TRPF_THEMA] [AC:Q56320] [GN:TRPF] [OR:THERMOTOGA MARITIMA]


[EC:5.3.1.24] [DE:N-(5′-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE, (PRAI)]


[SP:Q56320] [DB:swissprot] >pir:[LN:S59048] [AC:S59048] [PN:phosphoribosyl


anthranilate isomerase trpF] [GN:trpF] [CL:phosphoribosylanthranilate


isomerase:trpF homology] [OR:Thermotoga maritima] [DB:pir2]


>gp:[GI:g1054860] [LN:TMTRABCDF] [AC:X92729] [PN:phosphoribosyl anthranilate


isomerase] [GN:trpF] [OR:Thermotoga maritima] [DB:genpept-bct1]


[DE:T. maritima trpD, trpC, trpF, trpB, and trpA genes.] [SP:Q56320]


[LE:1012] [RE:1629] [DI:direct] >gp:[GI:g4980631] [LN:AE001699]


[AC:AE001699:AE000512] [PN:phosphoribosylanthranilate isomerase] [GN:TM0139]


[OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga maritima section


11 of 136 of the complete genome.] [NT:similar to PID:1054860 SP:Q56320


GB:AE000512] [LE:7969] [RE:8586] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10553766_f2_397
390
4162
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1058463_c3_978
391
4163
2121
706
2472
8.3e−257










Description


pir:[LN:S70691] [AC:S70691:C69680] [PN:polyribonucleotide


nucleotidyltransferase, alpha chain pnpA:polynucleotide phosphorylase pnpA]


[GN:pnpA] [CL:polyribonucleotide nucleotidyltransferase alpha chain]


[OR:Bacillus subtilis] [EC:2.7.7.8] [DB:pir2] >gp:[GI:e1185260:g2634041]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:polynucleotide phosphorylase


(PNPase)] [GN:pnpA] [FN:necessary for competence development] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.7.7.8] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:


comR] [SP:P50849] [LE:140354] [RE:142471] [DI:direct] >gp:[GI:g1184680]


[LN:BSU29668] [AC:U29668] [PN:polynucleotide phosphorylase] [GN:pnpA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis ribosomal


protein RpsO (rpsO) gene, partial cds, and polynucleotide phosphorylase


(pnpA) gene, complete cds.] [LE:224] [RE:2341] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10657925_c3_1017
392
4164
948
315
573
1.4e−55










Description


pir:[LN:H69722] [AC:H69722:B25364] [PN:homoserine kinase,] [GN:thrB]


[CL:homoserine kinase thrB] [OR:Bacillus subtilis] [EC:2.7.1.39] [DB:pir2]


>gp:[GI:e1184303:g2635721] [LN:BSUB0017] [AC:Z99120:AL009126] [PN:homoserine


kinase] [GN:thrB] [FN:threonine biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.1.39] [DE:Bacillus subtilis complete genome


(section 17 of 21):from 3197001 to 3414420.] [NT:alternate gene name:thrA]


[LE:114902] [RE:115831] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10667002_f2_278
393
4165
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1074090_c1_728
394
4166
906
301
697
1.0e−68










Description


sp:[LN:CODV_BACSU] [AC:P39776] [GN:CODV] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


INTEGRASE/RECOMBINASE CODV] [SP:P39776] [DB:swissprot] >pir:[LN:G69601]


[AC:G69601:S61493:S72309] [PN:integrase/recombinase codV] [GN:codV]


[CL:probable site-specific integrase/recombinase XerC] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g535348] [LN:BSU13634] [AC:U13634] [PN:CodV]


[GN:codV] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


JH642 dipeptide permease operon regulators, codV, codW, codX, and codY genes,


complete cds.] [LE:293] [RE:1207] [DI:direct] >gp:[GI:e1185205:g2633986]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:integrase/recombinase] [GN:codV]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [SP:P39776] [LE:88166]


[RE:89080] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_10975428_f2_340
395
4167
879
292
80
0.013










Description


sp:[LN:BICD_DROME] [AC:P16568] [GN:BICD] [OR:DROSOPHILA MELANOGASTER]


[SR:, FRUIT FLY] [DE:CYTOSKELETON-LIKE BICAUDAL D PROTEIN] [SP:P16568]


[DB:swissprot] >pir:[LN:A33636] [AC:A33636] [PN:bicaudal protein D]


[GN:BicD] [OR:Drosophila melanogaster] [DB:pir2] >gp:[GI:g157006]


[LN:DROBICD] [AC:M31684] [OR:Drosophila melanogaster] [SR:D. melanogaster


(strain DfTW119) embryo, cDNA to mRNA] [DB:genpept-inv1] [DE:D. melanogaster


cytoskeleton-like bicaudalD protein (BicD) mRNA, complete cds.] [NT:bicaudalD


protein] [LE:132] [RE:2480] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1179775_f1_70
396
4168
132
43
42
0.029










Description


pir:[LN:S78676] [AC:S78676:S78677] [PN:hypothetical protein Q0144]


[OR:mitochondrion Saccharomyces cerevisiae] [DB:pir2]


>gp:[GI:e1370708:g4160384] [LN:SCE011856] [AC:AJ011856] [OR:Mitochondrion


Saccharomyces cerevisiae] [SR:baker's yeast] [DB:genpept-pln1]


[DE:Saccharomyces cerevisiae complete mitochondrial genome.] [NT:ORF Q0144]


[LE:54109] [RE:54438] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_11817625_f1_65
397
4169
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1183337_c2_847
398
4170
447
148
303
5.8e−27










Description


sp:[LN:NUSA_BACSU] [AC:P32727] [GN:NUSA] [OR:BACILLUS SUBTILIS] [DE:N


UTILIZATION SUBSTANCE PROTEIN A HOMOLOG (NUSA PROTEIN)] [SP:P32727]


[DB:swissprot] >pir:[LN:C36905] [AC:C36905:B69668:S31991] [PN:transcription


termination-antitermination factor nusA] [GN:nusA] [CL:Bacillus


transcription termination factor nusA:transcription termination factor nusA


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g49316] [LN:BSORF1T7A]


[AC:Z18631] [GN:ORF2] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis infB-nusA operon.] [SP:P32727] [LE:961] [RE:2076] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_11844802_c2_941
399
4171
327
108










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_11926627_f3_614
400
4172
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_11930317_c3_974
401
4173
336
111
251
1.9e−21










Description


sp:[LN:YLXQ_BACSU] [AC:P32729] [GN:YLXQ] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


RIBOSOMAL PROTEIN IN NUSA-INFB INTERGENIC REGION (ORF4)] [SP:P32729]


[DB:swissprot] >pir:[LN:E36905] [AC:E36905:C69882:S31993] [PN:ribosomal


protein L7AE family homolog ylxQ:hypothetical protein 2 (infB 5′ region)]


[GN:ylxQ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g49318] [LN:BSORF1T7A]


[AC:Z18631] [GN:ORF4] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis infB-nusA operon.] [SP:P32729] [LE:2367] [RE:2669]


[DI:direct] >gp:[GI:e1185253:g2634034] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ylxQ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:alternate gene name:ymxC; similar to ribosomal] [SP:P32729] [LE:134658]


[RE:134960] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1212785_f1_108
402
4174
213
70
74
0.048










Description


pir:[LN:G70047] [AC:G70047] [PN:conserved hypothetical protein yvrM]


[GN:yvrM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184405:g2635823]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvrM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to hypothetical proteins]


[LE:214190] [RE:214951] [DI:complement] >gp:[GI:e1186014:g2635839]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvrM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[LE:11640] [RE:12401] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_12694082_c2_889
403
4175
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_12703763_f3_592
404
4176
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13087513_c2_907
405
4177
3033
1010
417
4.1e−65










Description


pir:[LN:D71302] [AC:D71302] [PN:probable exonuclease (sbcC)] [GN:TP0627]


[OR:Treponema pallidum subsp. pallidum] [SR:, syphilis spirochete] [DB:pir2]


>gp:[GI:g3322922] [LN:AE001237] [AC:AE001237:AE000520] [PN:exonuclease


(sbcC)] [GN:TP0627] [OR:Treponema pallidum] [DB:genpept-bct2] [DE:Treponema


pallidum section 53 of 87 of the complete genome.] [NT:similar to SP:P13458


GB:X15981 PID:145327 PID:42914] [LE:12418] [RE:15561] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13179692_c1_724
406
4178
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1360958_c2_905
407
4179
270
89
109
2.1e−06










Description


pir:[LN:C69891] [AC:C69891:S57406] [PN:yneJ protein:protein 160] [GN:yneJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e249647:g1405451] [LN:BC170DEGR]


[AC:Z73234] [PN:YneJ] [GN:yneJ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis DNA (26.2 kb fragment; 170 degree region).] [NT:identical to


yoxI (from acc. no. X87845)] [SP:P45710] [LE:6147] [RE:6638] [DI:direct]


>gp:[GI:e1183454:g2634179] [LN:BSUB0010] [AC:Z99113:AL009126] [GN:yneJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [NT:alternate


gene name:yoxI] [SP:P45710] [LE:142526] [RE:143017] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13678135_f3_575
408
4180
159
52
84
0.00093










Description


pir:[LN:B71622] [AC:B71622] [PN:metal binding protein (DHHC domain)


PFB0140w] [GN:PFB0140w] [OR:Plasmodium falciparum] [DB:pir2]


>gp:[GI:g3845106] [LN:AE001375] [AC:AE001375:AE001362] [PN:metal binding


protein (DHHC domain)] [GN:PFB0140w] [OR:Plasmodium falciparum] [SR:malaria


parasite P. falciparum] [DB:genpept-inv2] [DE:Plasmodium falciparum


chromosome 2, section 12 of 73 of the complete sequence.] [NT:identified by


sequence similarity; putative] [LE:814] [RE:1050] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13678462_f1_15
409
4181
564
187
303
5.8e−27










Description


sp:[LN:SPHX_SYNP7] [AC:P39665] [GN:SPHX] [OR:SYNECHOCOCCUS SP] [SR:PCC


7942, ANACYSTIS NIDULANS R2] [DE:SPHX PROTEIN PRECURSOR] [SP:P39665]


[DB:swissprot] >pir:[LN:S54402] [AC:S54402] [PN:SphX protein] [CL:sphX


protein] [OR:Synechococcus sp.] [DB:pir2] >gp:[GI:d1005689:g496319]


[LN:SYOSPHX] [AC:D26161] [PN:SphX] [GN:sphX] [OR:Synechococcus sp.]


[SR:Synechococcus sp. (strain:PCC7942) DNA] [DB:genpept-bct1]


[DE:Synechococcus sp. sphX gene for phosphate regulon SphX, complete cds.]


[LE:317] [RE:1330] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13691280_f1_42
410
4182
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13845300_f2_231
411
4183
309
102
79
0.0065










Description


sp:[LN:YCIB_BUCAP] [AC:P42397] [OR:BUCHNERA APHIDICOLA] [DE:HYPOTHETICAL


21.4 KD PROTEIN IN TRPA 3′REGION] [SP:P42397] [DB:swissprot]


>pir:[LN:F49897] [AC:F49897:S36433] [PN:protein VI (trpA 3′-region)]


[OR:Buchnera aphidicola] [DB:pir2] >gp:[GI:g396663] [LN:BATRYOPEA]


[AC:Z19055] [PN:ORF 6] [OR:Buchnera aphidicola] [DB:genpept-bct1]


[DE:B. aphidicola tryptophan operon.] [NT:homologous to E. coli ORF6 located


downstream of] [SP:P42397] [LE:7540] [RE:8073] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_13875216_c3_1046
412
4184
1023
340
895
1.1e−89










Description


gp:[GI:e1181777:g2632149] [LN:SCY14029] [AC:Y14029] [PN:antiterminator]


[GN:glcT] [OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:Staphylococcus


carnosus glcT gene.] [LE:213] [RE:1076] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14251643_f3_547
413
4185
309
102
143
5.2e−10










Description


pir:[LN:H69891] [AC:H69891] [PN:hypothetical protein yneR] [GN:yneR]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e249654:g1405458] [LN:BC170DEGR]


[AC:Z73234] [PN:YneR] [GN:yneR] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis DNA (26.2 kb fragment; 170 degree region).] [LE:13221]


[RE:13508] [DI:complement] >gp:[GI:e1183464:g2634189] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:yneR] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [LE:149600] [RE:149887] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14457876_f3_521
414
4186
135
44
194
2.1e−15










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14471938_c3_1027
415
4187
183
60
231
2.5e−19










Description


sp:[LN:RL33_BACST] [AC:P23375] [GN:RPMG] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L33] [SP:P23375] [DB:swissprot] >pir:[LN:B48396]


[AC:B48396] [PN:ribosomal protein L33] [CL:Escherichia coli ribosomal


protein L33] [OR:Bacillus stearothermophilus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_1461588_f1_16
416
4188
942
313
712
2.6e−70










Description


pir:[LN:D69419] [AC:D69419] [PN:phosphate ABC transporter, permease protein


(pstC) homolog] [CL:phoW protein] [OR:Archaeoglobus fulgidus] [DB:pir2]


>gp:[GI:g2649218] [LN:AE001010] [AC:AE001010:AE000782] [PN:phosphate ABC


transporter, permease protein] [GN:AF1357] [OR:Archaeoglobus fulgidus]


[DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 97 of 172 of the


complete genome.] [NT:similar to SP:P46339 PID:903304 PID:1303855] [LE:5294]


[RE:6187] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14634450_f1_1
417
4189
204
67










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14723387_c2_904
418
4190
282
93
250
2.4e−21










Description


sp:[LN:YNEF_BACSU] [AC:P45708] [GN:YNEF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 8.3 KD PROTEIN IN TTK-CCDA INTERGENIC REGION] [SP:P45708]


[DB:swissprot] >pir:[LN:S57403] [AC:S57403:A69891] [PN:hypothetical protein


yneF] [GN:yneF] [CL:conserved hypothetical protein yneF] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e249644:g1405448] [LN:BC170DEGR] [AC:Z73234]


[PN:YneF] [GN:yneF] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


DNA (26.2 kb fragment; 170 degree region).] [NT:identical to yoxG (from acc.


no. X87845)] [SP:P45708] [LE:4225] [RE:4443] [DI:direct] >gp:[GI:g870924]


[LN:BSTKTCCDA] [AC:X87845] [GN:orf] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis ORF120, ORF160, tkt and ccdA genes.] [SP:P45708] [LE:1011]


[RE:1229] [DI:direct] >gp:[GI:e1183450:g2634175] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:yneF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [NT:alternate gene name:yoxG] [SP:P45708]


[LE:140604] [RE:140822] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14850082_f1_18
419
4191
933
310
880
4.2e−88










Description


sp:[LN:YQGK_BACSU] [AC:P46342] [GN:YQGK] [OR:BACILLUS SUBTILIS]


[DE:INTERGENIC REGION (ORF75)] [SP:P46342] [DB:swissprot] >pir:[LN:E69956]


[AC:E69956] [PN:phosphate ABC transporter (ATP-binding pro) homolog yqgK]


[GN:yqgK] [CL:inner membrane protein malK:ATP-binding cassette homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013193:g1303858] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqgK] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:141613] [RE:142395]


[DI:direct] >gp:[GI:d1010228:g903307] [LN:BACPST] [AC:D58414] [PN:ORF75]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642 (trpC2 pheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for homologues of the E.


coli pst gene products.] [NT:Similality to phosphate transport protein (PstB)


of] [LE:3782] [RE:4564] [DI:direct] >gp:[GI:e1185762:g2634928] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqgK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:alternate gene name:yzmF; similar to phosphate


ABC] [SP:P46342] [LE:181226] [RE:182008] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14876553_c2_919
420
4192
996
331
570
2.9e−55










Description


gp:[GI:g1147744] [LN:EHU42211] [AC:U42211] [PN:PBP 5 synthesis repressor]


[GN:psr] [FN:involved in the regulation of penicillin] [OR:Enterococcus


hirae] [DB:genpept-bct2] [DE:Enterococcus hirae PBP 5 synthesis repressor


(psr) gene, complete cds.] [LE:746] [RE:1627] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_14901512_c3_1012
421
4193
552
183
500
7.7e−48










Description


sp:[LN:NUC_STAIN] [AC:P43269] [GN:NUCI:NUC] [OR:STAPHYLOCOCCUS INTERMEDIUS]


[EC:3.1.31.1] [DE:(STAPHYLOCOCCAL NUCLEASE)] [SP:P43269] [DB:swissprot]


>pir:[LN:S26079] [AC:S26079] [PN:thermonuclease] [CL:micrococcal nuclease]


[OR:Staphylococcus intermedius] [DB:pir2] >gp:[GI:g47146] [LN:SINUC8]


[AC:X67678] [PN:thermonuclease] [GN:nuc] [OR:Staphylococcus intermedius]


[DB:genpept-bct1] [DE:S. intermedius nuc gene for thermonuclease.]


[SP:P43269] [LE:495] [RE:1001] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_15084826_c3_1034
422
4194
300
99
268
3.0e−23










Description


sp:[LN:CCDC_BACSU] [AC:P45710] [GN:CCDC] [OR:BACILLUS SUBTILIS] [DE:CCDC


PROTEIN] [SP:P45710] [DB:swissprot] >gp:[GI:g870927] [LN:BSTKTCCDA]


[AC:X87845] [GN:ORF160] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis ORF120, ORF160, tkt and ccdA genes.] [SP:P45710] [LE:2942]


[RE:3424] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_15757712_f1_23
423
4195
732
243
686
1.5e−67










Description


gp:[GI:g3800828] [LN:AF076684] [AC:AF076684] [PN:oligopeptide transporter


putative ATPase domain] [GN:opp-2F] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus oligopeptide transporter


putative membrane permease domain (opp-2B), oligopeptide transporter


putative membrane permease domain (opp-2C), oligopeptide transporter putative


ATPase domain (opp-2D), and oligopeptide transporter putative ATPase domain


(opp-2F) genes, complete cds.] [LE:2735] [RE:3436] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_15803510_c2_854
424
4196
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_16205378_c1_815
425
4197
243
80










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_162843_f2_330
426
4198
468
155
395
1.0e−36










Description


Sp:[LN:LYSP_ECOLI] [AC:P25737] [GN:LYSP:CADR] [OR:ESCHERICHIA COLI]


[DE:LYSINE-SPECIFIC PERMEASE] [SP:P25737] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_16835388_f1_19
427
4199
654
217
265
6.2e−23










Description


gp:[GI:d1023735:g2547082] [LN:D89963] [AC:D89963] [PN:negative regulatory


protein of pho regulon] [GN:phoU] [OR:Enterobacter cloacae] [SR:Enterobacter


cloacae (strain:IFO3320) DNA] [DB:genpept-bct1] [DE:Enterobacter cloacae


pstS, pstC, pstA, pstB and phoU genes, complete cds.] [NT:The phoU gene is


required for chemotaxis to ward] [LE:4554] [RE:5279] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_17040911_c1_771
428
4200
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_190707_f1_81
429
4201
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_194431_c3_1033
430
4202
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_19540678_c1_797
431
4203
438
145
270
7.7e−23










Description


gp:[GI:g4835822] [LN:AF102174] [AC:AF102174] [PN:glycine betaine transporter


BetL] [GN:betL] [OR:Listeria monocytogenes] [DB:genpept-bct2] [DE:Listeria


monocytogenes glycine betaine transporter BetL (betL)gene, complete cds.]


[LE:209] [RE:1732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_19730438_c2_926
432
4204
1272
423
2221
3.3e−230










Description


pir:[LN:JC5326] [AC:JC5326] [PN:methicillin resistance factor FEMB]


[GN:femB] [CL:methicillin resistance factor femA] [OR:Staphylococcus


epidermidis] [DB:pir2] >gp:[GI:g1815620] [LN:SEU23714] [AC:U23714] [PN:FEMB]


[GN:femB] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:Staphylococcus epidermidis factor essential for methicillin resistance


FEMB (femB) gene, complete cds.] [NT:Factor essential for methicillin


resistance] [LE:33] [RE:1286] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_19735887_c1_754
433
4205
1581
526
1924
9.7e−199










Description


pir:[LN:D69884] [AC:D69884] [PN:conserved hypothetical protein ymcB]


[GN:ymcB] [CL:conserved hypothetical protein b0835] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185292:g2634073] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ymcB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to hypothetical proteins] [LE:173791] [RE:175320] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_19953281_c3_1016
434
4206
1347
448
822
5.8e−82










Description


sp:[LN:DHOM_BACSU] [AC:P19582] [GN:HOM:TDM] [OR:BACILLUS SUBTILIS]


[EC:1.1.1.3] [DE:HOMOSERINE DEHYDROGENASE, (HDH)] [SP:P19582] [DB:swissprot]


>gp:[GI:g558494] [LN:BACHOM] [AC:M23217:J04034] [PN:homoserine


dehydrogenase] [GN:hom] [OR:Bacillus subtilis] [SR:Bacillus subtilis DNA]


[DB:genpept-bct1] [EC:1.1.1.3] [DE:Bacillus subtilis homoserine


dehydrogenase (hom) gene, complete cds, threonine synthase (thrC) gene, 5′


end of cds.] [LE:276] [RE:1577] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20086512_c2_899
435
4207
654
217
780
1.6e−77










Description


gp:[GI:g3064126] [LN:AF011784] [AC:AF011784] [PN:catalase] [GN:katA]


[OR:Vibrio fischeri] [DB:genpept-bct2] [DE:Vibrio fischeri catalase (katA)


gene, complete cds.] [LE:256] [RE:1704] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20095803_c3_994
436
4208
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20312510_f3_506
437
4209
1041
346
1070
3.1e−108










Description


gp:[GI:g3800825] [LN:AF076684] [AC:AF076684] [PN:oligopeptide transporter


putative membrane] [GN:opp-2B] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative membrane permease


domain (opp-2B), oligopeptide transporter putative membrane permease domain


(opp-2C), oligopeptide transporter putative ATPase domain (opp-2D), and


oligopeptide transporter putative ATPase domain (opp-2F) genes, complete


cds.] [LE:173] [RE:1159] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20347165_f3_485
438
4210
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20370457_c2_884
439
4211
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20400051_f2_319
440
4212
810
269
691
4.4e−68










Description


sp:[LN:LEXA_BACSU] [AC:P31080] [GN:LEXA:DINR] [OR:BACILLUS SUBTILIS] [DE:SOS


REGULATORY PROTEIN LEXA/DINR] [SP:P31080] [DB:swissprot] >pir:[LN:A41315]


[AC:A41315:B69651] [PN:transcription repressor of SOS regulon lexA/dinR]


[GN:lexA:dinR] [CL:lexA protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g289288] [LN:BACLEXA] [AC:M64684] [GN:lexA] [OR:Bacillus subtilis]


[SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis lexA


gene, 3′ end.] [LE:390] [RE:1007] [DI:direct] >gp:[GI:e1183444:g2634169]


[LN:BSUB0010] [AC:Z99113:AL009126] [PN:transcriptional regulator] [GN:lexA]


[FN:negative regulation of the SOS regulon] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [NT:alternate gene name:dinR] [SP:P31080]


[LE:135694] [RE:136311] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20423127_c3_991
441
4213
2676
891
2302
8.6e−239










Description


pir:[LN:C69663] [AC:C69663] [PN:DNA mismatch repair (recognition) mutS]


[GN:mutS] [CL:DNA mismatch repair protein mutS] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185295:g2634076] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:mutS] [FN:DNA mismatch repair recognition] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [SP:P49849] [LE:176693] [RE:179269] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20485875_c3_1008
442
4214
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20501250_c2_922
443
4215
1029
342
551
3.0e−53










Description


sp:[LN:TRPD_METJA] [AC:Q57686] [GN:TRPD:MJ0234] [OR:METHANOCOCCUS


JANNASCHII] [EC:2.4.2.18] [DE:ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE,]


[SP:Q57686] [DB:swissprot] >pir:[LN:C64329] [AC:C64329] [PN:anthranilate


synthase, subunit II′] [CL:anthranilate phosphoribosyltransferase:trpD


homology] [OR:Methanococcus jannaschii] [EC:4.1.3.27] [DB:pir2]


[MP:FOR225111–2261212] >gp:[GI:g1590969] [LN:U67479] [AC:U67479:L77117]


[PN:anthranilate synthase component II (trpD)] [GN:MJ0234] [OR:Methanococcus


jannaschii] [DB:genpept-bct2] [DE:Methanococcus jannaschii] section 21 of 150


of the complete genome.] [NT:similar to GB:M33814 SP:P20574 PID:151234


percent] [LE:3662] [RE:4672] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20504512_c2_864
444
4216
1758
585
808
1.8e−80










Description


gp:[GI:g4981713] [LN:AE001773] [AC:AE001773:AE000512] [PN:2-oxoacid


ferredoxin oxidoreductase, alpha] [GN:TM1164] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 85 of 136 of the complete


genome.] [NT:similar to GB:AE000666 percent identity:68.99;] [LE:8189]


[RE:9865] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_205327_c2_836
445
4217
1332
443
1679
8.9e−173










Description


sp:[LN:GID_BACSU] [AC:P39815] [GN:GID] [OR:BACILLUS SUBTILIS] [DE:GID


PROTEIN] [SP:P39815] [DB:swissprot] >pir:[LN:A69632] [AC:A69632:S61497]


[PN:glucose-inhibited division protein gid] [GN:gid] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185204:g2633985] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:glucose-inhibited division protein] [GN:gid] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene name:ylyC] [LE:86791]


[RE:88098] [DI:direct] >gp:[GI:e332181:g2462971] [LN:BSYLQGCOD]


[AC:AJ000975] [PN:Gid protein] [GN:gid] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ylqg to cody gene region.]


[SP:P39815] [LE:5959] [RE:7266] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20745462_c1_767
446
4218
1257
418
862
3.4e−86










Description


pir:[LN:B69888] [AC:B69888] [PN:GTP-binding protein proteinase modulator


homolog ynbA] [GN:ynbA] [CL:GTP-binding protein hflX] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g1750108] [LN:BSU66480] [AC:U66480] [PN:YnbA]


[GN:ynbA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


SpoVK (spoVK), YnbA (ynbA), YnbB (ynbB), GlnR (glnR), glutamine synthetase


(glnA), YnaA (ynaA), YnaB (ynaB), YnaC (ynaC), YnaD (ynaD), YnaE (ynaE), YnaF


(ynaF), YnaG (ynaG), YnaH (ynaH), YnaI (ynaI), YnaJ (ynaJ), xylan


beta-1,4-xylosidase (xynB), xylose repressor (xylR), xylose isomerase (xylA),


xylulose kinase(xylB), YncB (yncB), YncC (yncC), YncD (yncD) and YncE


(yncE) genes, complete cds.] [LE:1382] [RE:2386] [DI:direct]


>gp:[GI:e1183402:g2634127] [LN:BSUB0010] [AC:Z99113:AL009126] [GN:ynbA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [NT:similar to


GTP-binding protein protease modulator] [LE:93433] [RE:94437] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20819512_f1_50
447
4219
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_20968788_f3_579
448
4220
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_21641877_f2_250
449
4221
954
317
687
1.2e−67










Description


pir:[LN:E69419] [AC:E69419] [PN:phosphate ABC transporter, permease protein


(pstA) homolog] [CL:phoW protein] [OR:Archaeoglobus fulgidus] [DB:pir2]


>gp:[GI:g2649217] [LN:AE001010] [AC:AE001010:AE000782] [PN:phosphate ABC


transporter, permease protein] [GN:AF1358] [OR:Archaeoglobus fulgidus]


[DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 97 of 172 of the


complete genome.] [NT:similar to GB:L10328 SP:P07654 GB:K01992 GB:X02723]


[LE:6184] [RE:7035] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_21751938_f3_601
450
4222
708
235
183
3.0e−14










Description


gp:[GI:g2897104] [LN:AF020798] [AC:AF020798] [PN:putative host cell


surface-exposed lipoprotein] [OR:Streptococcus thermophilus bacteriophage


TP-J34] [DB:genpept-phg] [DE:Streptococcus thermophilus bacteriophage


lysogeny module, integrasehomolog (int), putative host cell surface-exposed


lipoprotein, putative metallo-proteinase, repressor, Cro-like


regulatory protein, and P1-antirepressor homolog genes, complete cds.]


[NT:orf142] [LE:3941] [RE:4369] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_21912535_f1_212
451
4223
420
139
75
0.018










Description


pir:[LN:B21124] [AC:B21124] [PN:Bkm-like sex-determining region


hypothetical protein CS314] [GN:Bkm] [OR:Drosophila melanogaster] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_2195265_f1_6
452
4224
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22304635_f1_113
453
4225
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22368803_c2_857
454
4226
2397
798
1659
1.2e−170










Description


sp:[LN:SP3E_BACSU] [AC:P21458:P21459] [GN:SPOIIIE] [OR:BACILLUS SUBTILIS]


[DE:STAGE III SPORULATION PROTEIN E] [SP:P21458:P21459] [DB:swissprot]


>pir:[LN:S09411] [AC:S09411:A32269:B32269:F69712] [PN:DNA translocase


spoIIIE] [GN:spoIIIE] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185271:g2634052] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:DNA


translocase] [GN:spoIIIE] [FN:required for chromosome partitioning through]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [SP:P21458] [LE:153248]


[RE:155611] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22390917_f3_560
455
4227
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22444075_c3_959
456
4228
873
290
788
2.3e−78










Description


gp:[GI:d1034831:g3767595] [LN:AB015195] [AC:AB015195] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:RN450) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus gene for LytN and Eprh, complete cds.] [NT:ORF4]


[LE:3221] [RE:4024] [DI:direct] >gp:[GI:d1034831:g3767595] [LN:AB015195]


[AC:AB015195] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:RN450) DNA] [DB:genpept] [DE:Staphylococcus aureus gene for LytN and


Eprh, complete cds.] [NT:ORF4] [LE:3221] [RE:4024] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22453425_f1_196
457
4229
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22470463_c3_989
458
4230
810
269
881
3.3e−88










Description


pir:[LN:G69884] [AC:G69884] [PN:conserved hypothetical protein ymdB]


[GN:ymdB] [CL:hypothetical protein ymdB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185288:g2634069] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:ymdB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:similar to


hypothetical proteins] [LE:169889] [RE:170683] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22539812_c1_768
459
4231
1254
417
1290
1.5e−131










Description


pir:[LN:C69888] [AC:C69888] [PN:conserved hypothetical protein ynbB]


[GN:ynbB] [CL:hypothetical protein ynbB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1750109] [LN:BSU6648O] [AC:U66480] [PN:YnbB] [GN:ynbB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis SpoVK (spoVK), YnbA


(ynbA), YnbB (ynbB), GlnR (glnR), glutamine synthetase (glnA), YnaA (ynaA),


YnaB (ynaB), YnaC (ynaC), YnaD (ynaD), YnaE (ynaE), YnaF (ynaF), YnaG (ynaG),


YnaH (ynaH), YnaI (ynaI), YnaJ (ynaJ), xylan beta-1,4-xylosidase


(xynB), xylose repressor (xylR), xylose isomerase (xylA), xylulose


kinase(xylB), YncB (yncB), YncC (yncC), YncD (yncD) and YncE (yncE)genes,


complete cds.] [LE:2574] [RE:3839] [DI:direct] >gp:[GI:e1183403:g2634128]


[LN:BSUB0010] [AC:Z99113:AL009126] [GN:ynbB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


10 of 21):from 1781201 to 2014980.] [NT:similar to hypothetical proteins]


[LE:94625] [RE:95890] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22663932_f1_22
460
4232
972
323
1021
4.8e−103










Description


gp:[GI:g3800826] [LN:AF076684] [AC:AF0766841 [PN:oligopeptide transporter


putative membrane] [GN:opp-2C] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative membrane permease


domain (opp-2B), oligopeptide transporter putative membrane permease domain


(opp-2C), oligopeptide transporter putative ATPase domain (opp-2D), and


oligopeptide transporter putative ATPase domain (opp-2F) genes, complete


cds.] [LE:1152] [RE:1982] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_22850885_c1_752
461
4233
1596
531
1799
1.7e−185










Description


pir:[LN:F69884] [AC:F69884] [PN:conserved hypothetical protein ymdA]


[GN:ymdA] [CL:hypothetical protein ymdA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185287:g2634068] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:ymdA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:similar to


hypothetical proteins] [LE:168258] [RE:169820] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23445463_c3_965
462
4234
801
266
1002
4.9e−101










Description


pir:[LN:A69699] [AC:A69699:S09561] [PN:ribosomal protein S2


(rpsB):ribosomal protein BS1] [GN:rpsB] [CL:Escherichia coli ribosomal


protein S2] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185240:g2634021]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:ribosomal protein S2] [GN:rpsB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [SP:P21464] [LE:118905]


[RE:119645] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23472175_c3_975
463
4235
417
138
360
5.3e−33










Description


sp:[LN:RBFA_BACSU] [AC:P32731] [GN:RBFA] [OR:BACILLUS SUBTILIS]


[DE:RIBOSOME-BINDING FACTOR A (P15B PROTEIN)] [SP:P32731] [DB:swissprot]


>pir:[LN:G36905] [AC:G36905:G69689:S31996] [PN:ribosome-binding factor A


rbfA] [GN:rbfA] [CL:Escherichia coli protein P15B] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g580902] [LN:BSORF1T7A] [AC:Z18631] [GN:ORF6] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis infB-nusA operon.] [SP:P32731]


[LE:5131] [RE:5484] [DI:direct] >gp:[GI:e1185256:g2634037] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:ribosome-binding factor A] [GN:rbfA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:alternate gene name:ymxE, ylxO]


[SP:P32731] [LE:137422] [RE:137775] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23491077_c1_824
464
4236
1266
421
1037
9.6e−105










Description


sp:[LN:DCDA_BACSU] [AC:P23630] [GN:LYSA:LYS] [OR:BACILLUS SUBTILIS]


[EC:4.1.1.20] [DE:DIAMINOPIMELATE DECARBOXYLASE, (DAP DECARBOXYLASE)]


[SP:P23630] [DB:swissprot] >gp:[GI:d1013342:g1304007] [LN:BACJH642]


[AC:D84432:D82370] [PN:LysA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:281375] [RE:282700]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23554760_f3_646
465
4237
255
84
64
0.0077










Description


gp:[GI:g1123040] [LN:CELF44A2] [AC:U41993] [GN:F44A2.4] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid F44A2.] [NT:similar to C4-type zinc finger


and to C. elegans] [LE:11552:11678:12072:12484] [RE:11632:12022:12435:12848]


[DI:direct Join]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23557807_f2_357
466
4238
534
177
506
1.8e−48










Description


gp:[GI:e1172770:g2598550] [LN:LLAJ109] [AC:AJ000109] [PN:gluthatione


peroxidase] [GN:gpo] [OR:Lactococcus lactis] [DB:genpept-bct1]


[DE:Lactococcus lactis carB and gpo genes.] [LE:163] [RE:636] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23597802_c2_942
467
4239
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23632758_c1_723
468
4240
258
85
79
0.037










Description


gp:[GI:g882139] [LN:SCU17174] [AC:U17174] [PN:phase-2 flagellin structural


protein] [GN:fljB] [OR:Salmonella choleraesuis] [DB:genpept-bct2]


[DE:Salmonella choleraesuis ATCC 6967 phase-2 flagellin structural protein


(fljB) gene, complete cds.] [LE:1] [RE:1521] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23633467_c2_851
469
4241
987
328
659
1.1e−64










Description


pir:[LN:D69692] [AC:D69692] [PN:riboflavin kinase/FAD synthase ribC]


[GN:ribC] [CL:conserved hypothetical protein HI0963] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e269877:g1592690] [LN:BSRIBRPS] [AC:Z80835] [PN:FMN


adenylyltransferase] [GN:ribC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis ribC, rpsO and pnpA genes.] [NT:riboflavin kinase]


[SP:P54575] [LE:88] [RE:1038] [DI:direct] >gp:[GI:e1185258:g2634039]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:FAD synthase] [GN:ribC]


[FN:riboflavin biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.7.1.26:2.7.7.2] [DE:Bacillus subtilis complete genome (section 9 of


21):from 1598421 to 1807200.] [NT:riboflavin kinase] [SP:P54575] [LE:138805]


[RE:139755] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23650250_c1_729
470
4242
546
181
667
1.6e−65










Description


sp:[LN:HSLV_BACSU] [AC:P39070] [GN:HSLV:CLPQ:CODW] [OR:BACILLUS SUBTILIS]


[EC:3.4.99.-] [DE:HEAT SHOCK PROTEIN HSLV PRECURSOR,] [SP:P39070]


[DB:swissprot] >pir:[LN:S61494] [AC:S61494:S45024:C69601] [PN:20S


proteasome beta-type chain clpQ:heat shock protein codW] [GN:clpQ:codW]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g535349] [LN:BSU13634] [AC:U13634]


[PN:CodW] [GN:codW] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis JH642 dipeptide permease operon regulators, codV, codW, codX, and


codY genes, complete cds.] [LE:1220] [RE:1765] [DI:direct]


>gp:[GI:e1185206:g2633987] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:beta-type


subunit of the 20S proteasome] [GN:clpQ] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene name:hslV, codW] [SP:P39070]


[LE:89093] [RE:89638] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23650343_c2_949
471
4243
1167
388
527
1.1e−50










Description


pir:[LN:G71097] [AC:G71097] [PN:probable amidohydrolase] [GN:PH1043]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031084:g3257458]


[LN:AP000004]


[AC:AP000004:AB009494:AB009495:AB009496:AB009497:AB009498:AB009499]


[PN:387aa long hypothetical amidohydrolase] [GN:PH1043] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1]


[DE:Pyrococcus horikoshii OT3 genomic DNA, 777001–994000 nt. position(4/7).]


[NT:similar to Swiss_Prot:P80092 percent identity:] [LE:172136] [RE:173299]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23671890_c1_807
472
4244
1287
428
918
3.9e−92










Description


pir:[LN:A69730] [AC:A69730] [PN:UV-damage repair protein uvrX] [GN:uvrX]


[CL:umuC protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183597:g2634570] [LN:BSUB0012] [AC:Z99115:AL009126] [PN:UV-damage


repair protein] [GN:uvrX] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 12 of 21):from 2195541 to


2409220.] [NT:alternate gene name:yolE] [LE:74108] [RE:75358]


[DI:complement] >gp:[GI:g3025495] [LN:AF020713] [AC:AF020713]


[PN:IMPB/MUCB/SAMB family protein] [GN:yolE] [OR:Bacteriophage SPBc2]


[DB:genpept-phg] [DE:Bacteriophage SPBc2 complete genome.] [LE:14792]


[RE:16042] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23673150_c3_1029
473
4245
1002
333
1329
1.1e−135










Description


pir:[LN:C70015] [AC:C70015] [PN:GMP reductase, homolog yumD] [GN:yumD]


[OR:Bacillus subtilis] [EC:1.6.6.8] [DB:pir2] >gp:[GI:e1184292:g2635710]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yumD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to GMP reductase]


[LE:105099] [RE:106079] [DI:direct] >gp:[GI:e311468:g1934831] [LN:BSZ93939]


[AC:Z93939] [PN:unknown] [GN:yumD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment from yumA to yulF.] [NT:potential


inosine or guanosine 5′ monophosphate] [LE:3536] [RE:4516] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23725442_f2_230
474
4246
456
151
97
0.0028










Description


gp:[GI:g3582212] [LN:AE001272] [AC:AE001272] [PN:Potential membrane spanning


protein] [GN:ORF00031] [OR:Lactococcus lactis] [DB:genpept-bct2]


[DE:Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence.]


[NT:similar to GB:Z30588 PID:459257 percent identity:] [LE:25025] [RE:25804]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23860952_f3_526
475
4247
516
171
453
7.4e−43










Description


sp:[LN:PMSR_BACSU] [AC:P54154] [GN:YPPP] [OR:BACILLUS SUBTILIS]


[DE:REDUCTASE)] [SP:P54154] [DB:swissprot] >pir:[LN:E69940] [AC:E69940]


[PN:peptide methionine sulfoxide reductase homolog yppP] [GN:yppP]


[CL:peptide methionine sulfoxide reductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1256653] [LN:BACYACA] [AC:L77246] [PN:DNA-binding protein]


[GN:yppP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


(YAC10-9 clone) DNA region between the serA and kdg loci.] [NT:42.4% identity


with the Lycopersicon esculentum] [LE:33389] [RE:33922] [DI:direct]


>gp:[GI:e1183616:g2634589] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:yppP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [NT:similar to


peptide methionine sulfoxide reductase] [SP:P54154] [LE:91230] [RE:91763]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23944052_c1_789
476
4248
378
125
248
1.7e−20










Description


sp:[LN:CATB_BACFR] [AC:P45737] [GN:KATB] [OR:BACTEROIDES FRAGILIS]


[EC:1.11.1.6] [DE:CATALASE,] [SP:P45737] [DB:swissprot] >pir:[LN:A57262]


[AC:A57262] [PN:catalase,] [GN:katB] [CL:catalase] [OR:Bacteroides


fragilis] [EC:1.11.1.6] [DB:pir2] >gp:[GI:g841192] [LN:BFU18676] [AC:U18676]


[PN:catalase] [GN:katB] [FN:decomposes hydrogen peroxide in water and]


[OR:Bacteroides fragilis] [DB:genpept-bct2] [EC:1.11.1.6] [DE:Bacteroides


fragilis catalase (katB) gene, complete cds.] [LE:348] [RE:1808] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_23992812_c1_793
477
4249
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24017127_c1_769
478
4250
405
134
537
9.3e−52










Description


gp:[GI:g468509] [LN:SAGLNAR] [AC:X76490] [PN:glutamine synthetase repressor]


[GN:glnR] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus (bb270)


glnA and glnR genes.] [LE:975] [RE:1343] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24033217_c2_850
479
4251
930
309
720
3.8e−71










Description


sp:[LN:TRUB_BACSU] [AC:P32732] [GN:TRUB] [OR:BACILLUS SUBTILIS]


[EC:4.2.1.70] [DE:HYDROLYASE)] [SP:P32732] [DB:swissprot] >pir:[LN:G69726]


[AC:G69726:H36905:S31997] [PN:tRNA pseudouridine 5S synthase truB:P35


homolog] [GN:truB] [CL:Escherichia coli protein P35] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185257:g2634038] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:tRNA pseudouridine 55 synthase] [GN:truB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene name:ylxN, ymxF] [SP:P32732]


[LE:137857] [RE:138786] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24078753_c3_999
480
4252
450
149
295
4.1e−26










Description


pir:[LN:G69657] [AC:G69657] [PN:tRNA isopentenylpyrophosphate transferase


miaA] [GN:miaA] [CL:delta(2)-isopentenylpyrophosphate transferase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183392:g2634117] [LN:BSUB0010]


[AC:Z99113:AL009126] [PN:tRNA isopentenylpyrophosphate transferase]


[GN:miaA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [LE:84430]


[RE:85374] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24222137_f2_341
481
4253
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24225000_f3_475
482
4254
894
297
360
5.3e−33










Description


gp:[GI:g2194195] [LN:SGU61158] [AC:U61158] [PN:GdmF] [GN:gdmF]


[OR:Staphylococcus gallinarum] [DB:genpept-bct1] [DE:Staphylococcus


gallinarum Tue3928 GdmF (gdmF), putative membrane protein (gdmH), ABC


transporter (gdmT), and antibiotic gallidermin precursor (gdmA) genes,


complete cds, putative membrane protein(gdmE) and modifying enzyme (gdmB)


genes, partial cds.] [NT:proposed ABC transporter subunit (ATP-binding]


[LE:179] [RE:874] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24225053_c3_1031
483
4255
318
105
202
2.9e−16










Description


pir:[LN:E69894] [AC:E69894] [PN:hypothetical protein ynzC] [GN:ynzC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183447:g2634172] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:ynzC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [LE:137514] [RE:137747] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24251466_c1_799
484
4256
2745
914
3437
0.0










Description


sp:[LN:ACON_BACSU] [AC:P09339:Q45059] [GN:CITB] [OR:BACILLUS SUBTILIS]


[EC:4.2.1.3] [DE:ACONITATE HYDRATASE, (CITRATE HYDRO-LYASE) (ACONITASE)]


[SP:P09339:Q45059] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24257252_c1_727
485
4257
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24267941_c1_745
486
4258
726
241
304
4.5e−27










Description


sp:[LN:YMFC_BACSU] [AC:O31761] [GN:YMFC] [OR:BACILLUS SUBTILIS] [DE:REGION]


[SP:O31761] [DB:swissprot] >pir:[LN:B69885] [AC:B69885] [PN:transcription


regulator GntR family homolog ymfC] [GN:ymfC] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185272:g2634053] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ymfC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to transcriptional regulator (GntR family)] [SP:O31761]


[LE:155754] [RE:156479] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24267942_c1_823
487
4259
1089
362
300
1.2e−26










Description


sp:[LN:ALR_BACSU] [AC:P10725:P96620] [GN:ALR:DAL] [OR:BACILLUS SUBTILIS]


[EC:5.1.1.1] [DE:ALANINE RACEMASE,] [SP:P10725:P96620] [DB:swissprot]


>gp:[GI:d1020054:g1881274] [LN:AB001488] [AC:AB001488] [PN:ALANINE RACEMASE]


[GN:alr] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [EC:5.1.1.1] [DE:Bacillus subtilis genome sequence, 148 kb


sequence of the region between 35 and 47 degree.] [LE:50435] [RE:51604]


[DI:direct] >gp:[GI:e1182430:g2632764] [LN:BSUB0003] [AC:Z99106:AL009126]


[PN:D-alanine racemase] [GN:dal] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:5.1.1.1] [DE:Bacillus subtilis complete genome (section 3 of 21):from


402751 to 611850.] [NT:alternate gene name:alr] [SP:P10725] [LE:114179]


[RE:115348] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24275017_c2_856
488
4260
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24352200_f3_600
489
4261
1095
364
674
2.8e−66










Description


pir:[LN:T02833] [AC:T02833] [PN:hypothetical protein L4171.5]


[OR:Leishmania major] [DB:pir2] [MP:1] >gp:[GI:g2266911] [LN:AE001274]


[AC:AE001274:AC003011:AC002552:U60409:AF008205:AC002134:AF008206:U7 0253]


[PN:L4171.5] [GN:L4171.5] [OR:Leishmania major] [DB:genpept-inv2]


[DE:Leishmania major chromosome 1, complete sequence.] [NT:similar to


threonine aldolase; leucine zipper] [LE:124709] [RE:125788] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24407758_f3_696
490
4262
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24412811_c3_997
491
4263
957
318
147
4.4e−11










Description


pir:[LN:T02661] [AC:T02661] [PN:lysophospholipase homolog] [GN:LPL1]


[OR:Oryza sativa] [SR:, rice] [DB:pir2] >gp:[GI:g2801536] [LN:AF039531]


[AC:AF039531] [PN:lysophospholipase homolog] [GN:LPL1] [OR:Oryza sativa]


[DB:genpept-pln2] [DE:Oryza sativa lysophospholipase homolog (LPL1) mRNA,


complete cds.] [LE:46] [RE:960] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24414187_c3_1003
492
4264
396
131
74
0.011










Description


gp:[GI:g42727] [LN:ECRHAT] [AC:X60699] [GN:sodA] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:E. coli rhaT gene for L-rhamnose permease, rhaC (3′


end) and sodA(5′ end) genes.] [SP:P00448] [LE:<1] [RE:288] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24414818_c1_738
493
4265
870
289
952
9.8e−96










Description


gp:[GI:e1185251:g2634032] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:nusA]


[FN:transcription termination] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [LE:133252] [RE:134367] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24415933_c3_1078
494
4266
153
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24417512_f3_505
495
4267
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24470927_f2_358
496
4268
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24475252_c3_1052
497
4269
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24484683_c3_1041
498
4270
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24492827_f1_223
499
4271
2601
866
1069
3.9e−108










Description


pir.:[LN:G69801] [AC:G69801] [PN:hypothetical protein yfhO] [GN:yfhO]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182850:g2633184] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfhO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:128691] [RE:131150] [DI:direct]


>gp:[GI:d1025397:g2804545] [LN:D85082] [AC:D85082] [PN:YfhO] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:21582] [RE:24041]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24495928_c1_772
500
4272
210
69
70
0.028










Description


pir:[LN:G69058] [AC:G69058] [PN:hypothetical protein MTH1440] [GN:MTH1440]


[OR:Methanobacterium thermoautotrophicum] [DB:pir2] >gp:[GI:g2622552]


[LN:AE000905] [AC:AE000905:AE000666] [PN:unknown] [GN:MTH1440]


[OR:Methanobacterium thermoautotrophicum] [DB:genpept-bct2]


[DE:Methanobacterium thermoautotrophicum from bases 1293944 to


1305586(section 111 of 148) of the complete genome.] [NT:Function Code:14.00-


Unknown,; similar to,] [LE:7011] [RE:7214] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_2459667_c1_796
501
4273
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24631637_c3_1002
502
4274
708
235
236
7.3e−20










Description


gp:[GI:g2444107] [LN:U88974] [AC:U88974] [PN:ORF28] [OR:Streptococcus


thermophilus temperate bacteriophage O1205] [DB:genpept-phg]


[DE:Streptococcus thermophilus temperate bacteriophage O1205,


complete genome.] [LE:17062] [RE:17955] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24640925_c3_1037
503
4275
1272
423
1288
2.4e−131










Description


sp:[LN:OPUD_BACSU] [AC:P54417] [GN:OPUD] [OR:BACILLUS SUBTILIS] [DE:GLYCINE


BETAINE TRANSPORTER OPUD] [SP:P54417] [DB:swissprot] >pir:[LN:G69670]


[AC:G69670] [PN:glycine betaine transporter opuD] [GN:opuD] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185880:g2635491] [LN:BSUB0016]


[AC:Z99119:AL009126] [PN:glycine betaine transporter] [GN:opuD]


[FN:osmoprotection] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 16 of 21):from 2997771 to 3213410.]


[NT:alternate gene name:ytfQ] [SP:P54417] [LE:78128] [RE:79666] [DI:direct]


>gp:[GI:g2293330] [LN:AF008220] [AC:AF008220] [PN:putative transporter]


[GN:opuD] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


rrnB-dnaB genomic region.] [LE:100760] [RE:102298] [DI:complement]


>gp:[GI:g1524397] [LN:BSU50082] [AC:U50082] [PN:glycine betaine transporter


OpuD] [GN:opuD] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis glycine betaine transporter OpuD (opuD) gene, complete cds.]


[LE:460] [RE:1998] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24647176_c2_928
504
4276
771
256
128
4.7e−06










Description


gp:[GI:g4981173] [LN:AE001738] [AC:AE001738:AE000512] [PN:conserved


hypothetical protein] [GN:TM0651] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 50 of 136 of the complete genome.]


[NT:similar to PID:1653547 percent identity:52.43;] [LE:13445] [RE:14251]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24647182_c1_821
505
4277
729
242
232
3.9e−33










Description


gp:[GI:g4982086] [LN:AE001799] [AC:AE001799:AE000512]


[PN:dihydrodipicolinate reductase] [GN:TM1520] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 111 of 136 of the complete


genome.] [NT:similar to PID:1185002 percent identity:62.67;] [LE:16971]


[RE:17621] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24659382_c2_890
506
4278
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24666043_c1_803
507
4279
1233
410
866
1.3e−86










Description


pir:[LN:D70006] [AC:D70006] [PN:conserved hypothetical protein yubA]


[GN:yubA] [CL:Bacillus subtilis conserved hypothetical protein yueF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185989:g2635600] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:yubA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to hypothetical proteins] [LE:196858]


[RE:198024] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24744010_c3_1028
508
4280
273
90
347
1.3e−31










Description


pir:[LN:F69835] [AC:F69835] [PN:ribosomal protein S14 homolog yhzA]


[GN:yhzA] [CL:Escherichia coli ribosomal protein S14] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182877:g2633211] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yhzA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ribosomal protein S14] [LE:162598]


[RE:162867] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24792776_c2_846
509
4281
528
175
371
3.6e−34










Description


sp:[LN:YLXS_BACSU] [AC:P32726] [GN:YLXS] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 17.6 KD PROTEIN IN NUSA 5′ REGION (P15A) (ORF1)] [SP:P32726]


[DB:swissprot] >pir:[LN:B36905] [AC:B36905:E69882:S31990] [PN:conserved


hypothetical protein ylxS] [GN:ylxS] [CL:nus operon 15K protein]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g49315] [LN:BSORF1T7A] [AC:Z18631]


[GN:ORF1] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis infB-nusA


operon.] [SP:P32726] [LE:456] [RE:926] [DI:direct]


>gp:[GI:e1185250:g2634031] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:ylxS]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate


gene name:ymxA; similar to hypothetical] [SP:P32726] [LE:132747]


[RE:133217] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24823377_f3_498
510
4282
912
303
462
8.2e−44










Description


pir:[LN:E69840] [AC:E69840] [PN:hypothetical protein yitL] [GN:yitL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183105:g2633439] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yitL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:181473] [RE:182369] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24877312_f1_105
511
4283
1392
463
1093
1.1e−110










Description


pir:[LN:A69763] [AC:A69763] [PN:homoserine dehydrogenase homolog yclM]


[GN:yclM] [CL:aspartate kinase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182346:g2632680] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:yclM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:similar to


homoserine dehydrogenase] [LE:27453] [RE:28817] [DI:complement]


>gp:[GI:d1009646:g1805449] [LN:D50453] [AC:D50453] [PN:homologue of


aspartokinase 2 alpha and beta] [GN:yclM] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis DNA for 25–36 degree region containing theamyE-srfA region,


complete cds.] [LE:109856] [RE:111220] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24886550_c1_741
512
4284
288
95
350
6.1e−32










Description


pir:[LN:F69700] [AC:F69700:S11365:S70690] [PN:ribosomal protein S15


(rpsO):ribosomal protein BS18] [GN:rpsO] [CL:Escherichia coli ribosomal


protein S15:eubacterial ribosomal protein S15 homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e269878:g1592691] [LN:BSRIBRPS] [AC:Z80835]


[PN:ribosomal protein S15] [GN:rpsO] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis ribC, rpsO and pnpA genes.] [SP:P21473]


[LE:1195] [RE:1464] [DI:direct] >gp:[GI:e1185259:g2634040] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:ribosomal protein S15 (BS18)] [GN:rpsO]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [SP:P21473] [LE:139912]


[RE:140181] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24886677_c3_971
513
4285
1722
573
1885
1.3e−194










Description


pir:[LN:G69682] [AC:G69682] [PN:proline--tRNA ligase, proS:prolyl-tRNA


synthetase] [GN:proS] [CL:proline--tRNA ligase] [OR:Bacillus subtilis]


[EC:6.1.1.15] [DB:pir2] >gp:[GI:e1185248:g2634029] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:prolyl-tRNA synthetase] [GN:proS] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [LE:126301] [RE:127995] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_24900332_c2_870
514
4286
981
326
935
6.2e−94










Description


sp:[LN:MUTL_BACSU] [AC:P49850] [GN:MUTL] [OR:BACILLUS SUBTILIS] [DE:DNA


MISMATCH REPAIR PROTEIN MUTL] [SP:P49850] [DB:swissprot] >pir:[LN:A69663]


[AC:A69663] [PN:DNA mismatch repair mutL] [GN:mutL] [CL:mismatch repair


protein hexB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1002521]


[LN:BSU27343] [AC:U27343] [PN:MutL] [GN:mutL] [FN:mismatch-repair


recognition] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


spore coat protein (cotE) gene, partial cds, and mismatch repair recognition


proteins (mutS) and (mutL) genes, complete cds.] [LE:2782] [RE:4665]


[DI:direct] >gp:[GI:e1185296:g2634077] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:mutL] [FN:DNA mismatch repair] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [SP:P49850] [LE:179285] [RE:181168] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25445253_c3_1039
515
4287
495
164
336
1.8e−30










Description


pir:[LN:F69891] [AC:F69891] [PN:conserved hypothetical protein yneP]


[GN:yneP] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e249652:g1405456]


[LN:BC170DEGR] [AC:Z73234] [PN:YneP] [GN:yneP] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis DNA (26.2 kb fragment; 170 degree region).]


[LE:12510] [RE:12875] [DI:direct] >gp:[GI:e1183462:g2634187] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:yneP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [NT:similar to hypothetical proteins] [LE:148889]


[RE:149254] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25449061_c1_780
516
4288
249
82
191
4.3e−15










Description


pir:[LN:D69901] [AC:D69901] [PN:two-component response regulator [YocF]


homolog yocG] [GN:yocG] [CL:regulatory protein comA:response regulator


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2619014] [LN:AF027868]


[AC:AF027868] [PN:sensor regulator] [GN:yocG] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosome region between terC and


odhAB.] [NT:similar to B. subtilis Spo0A protein (267 aa)] [LE:71699]


[RE:72298] [DI:direct] >gp:[GI:e1185392:g2634313] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yocG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [NT:similar to two-component response regulator


[YocF] [LE:90790] [RE:91389] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25578140_f3_612
517
4289
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25587942_c3_956
518
4290
786
261
556
9.0e−54










Description


pir:[LN:C69693] [AC:C69693] [PN:ribonuclease H rnh] [GN:rnh]


[CL:ribonuclease HII] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185197:g2633978] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:ribonuclease H] [GN:rnh] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:3.1.26.4] [DE:Bacillus subtilis complete genome (section 9 of 21):from


1598421 to 1807200.] [LE:78430] [RE:79197] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25593925_f1_166
519
4291
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25626625_c2_891
520
4292
636
211










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25664512_c2_915
521
4293
495
164
279
2.0e−24










Description


pir:[LN:A69805] [AC:A69805] [PN:hypothetical protein yfiW] [GN:yfiW]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182832:g2633166] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfiW] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:113464] [RE:114240] [DI:direct]


>gp:[GI:d1025379:g2804527] [LN:D85082] [AC:D85082] [PN:YfiW] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:6355] [RE:7131]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25665937_c3_968
522
4294
558
185
841
5.7e−84










Description


sp:[LN:RRF_STAAU] [AC:O33276] [GN:FRR] [OR:STAPHYLOCOCCUS AUREUS]


[DE:PROBABLE RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)]


[SP:O33276] [DB:swissprot] >gp:[GI:g2645713] [LN:AF033018] [AC:AF033018]


[PN:ribosome recycling factor] [GN:frr] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus ribosome recycling factor (frr)


gene, complete cds.] [LE:1] [RE:555] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_257837_c3_1013
523
4295
174
57
87
0.0045










Description


gp:[GI:g2668605] [LN:AF015453] [AC:AF015453] [PN:unknown] [OR:Lactobacillus


rhamnosus] [DB:genpept-bct2] [DE:Lactobacillus rhamnosus


6-phospho-beta-glucosidase homolog gene, partial cds; GNTR transcriptional


regulator homolog and surface located protein genes, complete cds.]


[NT:3.0E-ORF-1] [LE:2236] [RE:>3603] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_25977318_c3_1044
524
4296
2415
804
3470
0.0










Description


sp:[LN:PARC_STAAU] [AC:P50073:P95682:P95683] [GN:PARC:GRLA]


[OR:STAPHYLOCOCCUS AUREUS] [EC:5.99.1.-] [DE:TOPOISOMERASE IV SUBUNIT A,]


[SP:P50073:P95682:P95683] [DB:swissprot] >gp:[GI:d1011747:g1777321]


[LN:D67075] [AC:D67075] [PN:DNA topoisomerase IV GrlA subunit] [GN:grlA]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (isolate:RN4220) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus DNA for DNA topoisomerase IV


GrlB subunit, DNA topoisomerase IV GrlA subunit, complete cds.] [LE:2376]


[RE:4778] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26205387_f2_331
525
4297
336
111










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26210925_c3_1032
526
4298
2028
675
2097
4.5e−217










Description


sp:[LN:TKT_BACSU] [AC:P45694] [GN:TKT:TKTA] [OR:BACILLUS SUBTILIS]


[EC:2.2.1.1] [DE:TRANSKETOLASE,] [SP:P45694] [DB:swissprot] >pir:[LN:G69723]


[AC:G69723:S57401] [PN:transketolase, tkt] [GN:tkt]


[CL:transketolase:thiamine pyrophosphate-binding domain homology]


[OR:Bacillus subtilis] [EC:2.2.1.1] [DB:pir2] >gp:[GI:e249642:g1405446]


[LN:BC170DEGR] [AC:Z73234] [PN:transketolase] [GN:tktA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis DNA (26.2 kb fragment; 170 degree


region).] [SP:P45694] [LE:1537] [RE:3540] [DI:direct]


>gp:[GI:e1183448:g2634173] [LN:BSUB0010] [AC:Z99113:AL009126]


[PN:transketolase] [GN:tkt] [FN:pentose phosphate] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.2.1.1] [DE:Bacillus subtilis complete genome


(section 10 of 21):from 1781201 to 2014980.] [NT:alternate gene name:tktA]


[SP:P45694] [LE:137916] [RE:139919] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26213890_c3_1026
527
4299
699
232
757
4.5e−75










Description


gp:[GI:e313391:g2052219] [LN:SCDNACAT] [AC:X96981] [PN:catalase] [GN:catA]


[OR:Streptomyces coelicolor] [DB:genpept-bct1] [DE:S. coelicolor catA gene.]


[LE:392] [RE:1858] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26257806_c3_993
528
4300
984
327
707
9.0e−70










Description


sp:[LN:MUTL_BACSU] [AC:P49850] [GN:MUTL] [OR:BACILLUS SUBTILIS] [DE:DNA


MISMATCH REPAIR PROTEIN MUTL] [SP:P49850] [DB:swissprot] >pir:[LN:A69663]


[AC:A69663] [PN:DNA mismatch repair mutL] [GN:mutL] [CL:mismatch repair


protein hexB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1002521]


[LN:BSU27343] [AC:U27343] [PN:MutL] [GN:mutL] [FN:mismatch-repair


recognition] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


spore coat protein (cotE) gene, partial cds, and mismatch repair recognition


proteins (mutS) and (mutL) genes, complete cds.] [LE:2782] [RE:4665]


[DI:direct] >gp:[GI:e1185296:g2634077] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:mutL] [FN:DNA mismatch repair] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [SP:P49850] [LE:179285] [RE:181168] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26306257_c2_835
529
4301
2073
690
2490
1.0e−258










Description


sp:[LN:TOP1_BACSU] [AC:P39814] [GN:TOPA:TOPI] [OR:BACILLUS SUBTILIS]


[EC:5.99.1.2] [DE:(UNTWISTING ENZYME) (SWIVELASE)] [SP:P39814]


[DB:swissprot] >pir:[LN:G69724] [AC:G69724] [PN:DNA topoisomerase I topA]


[GN:topA] [CL:DNA topoisomerase I] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g520753] [LN:BACSMF] [AC:L27797] [PN:DNA topoisomerase I] [FN:DNA


unwinding protein:removes negative] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain 8G5) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis (smf)


gene, 3′ end, DNA topisomase gene, complete cds, (gid) gene, 5′ end.]


[LE:673] [RE:2748] [DI:direct] >gp:[GI:e1185203:g2633984] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:DNA topoisomerase I] [GN:topA] [FN:DNA unwinding


protein removing negative] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:5.99.1.2] [DE:Bacillus subtilis complete genome (section 9 of 21):from


1598421 to 1807200.] [NT:alternate gene name:topI] [SP:P39814] [LE:84640]


[RE:86715] [DI:direct] >gp:[GI:e332180:g2462970] [LN:BSYLQGCOD]


[AC:AJ000975] [PN:DNA Topoisomerase I] [GN:topA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ylqg to codV gene region.]


[SP:P39814] [LE:3808] [RE:5883] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26353417_c1_753
530
4302
294
97
141
8.5e−10










Description


sp:[LN:YV12_CLOPE] [AC:Q46213] [OR:CLOSTRIDIUM PERFRINGENS] [DE:HYPOTHETICAL


10.7 KD PROTEIN IN VIRR 5′REGION (ORF2)] [SP:Q46213] [DB:swissprot]


>pir:[LN:S49553] [AC:S49553] [PN:hypothetical protein 2] [OR:Clostridium


perfringens] [DB:pir2] >gp:[GI:g498839] [LN:CPVIRRS] [AC:U04966]


[FN:unknown] [OR:Clostridium perfringens] [DB:genpept-bct1] [DE:Clostridium


perfringens JIR4025 extracellular toxin production regulatory locus ORF1 and


ORF3 genes, partial cds, and ORF2, ORF10c, virR, virS, and ORF4 genes,


complete cds.] [NT:ORF2] [LE:469] [RE:756] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26354837_c2_946
531
4303
900
299
570
2.9e−55










Description


sp:[LN:DAPA_METJA] [AC:Q57695] [GN:DAPA:MJ0244] [OR:METHANOCOCCUS


JANNASCHII] [EC:4.2.1.52] [DE:DIHYDRODIPICOLINATE SYNTHASE, (DHDPS)]


[SP:Q57695] [DB:swissprot] >pir:[LN:E64330] [AC:E64330]


[PN:dihydrodipicolinate synthase,] [OR:Methanococcus jannaschii]


[EC:4.2.1.52] [DB:pir2] [MP:REV233451–232582] >gp:[GI:g1590977] [LN:U67480]


[AC:U67480:L77117] [PN:dihydrodipicolinate synthase (dapA)] [GN:MJ0244]


[OR:Methanococcus jannaschii] [DB:genpept-bct2] [DE:Methanococcus jannaschii


section 22 of 150 of the complete genome.] [NT:similar to GB:L08471


SP:Q04796 PID:142830] [LE:511] [RE:1380] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26369016_c1_773
532
4304
387
128
105
5.6e−06










Description


gp:[GI:e139437:g1369938] [LN:BTP9011] [AC:X84706] [PN:scaffolding protein]


[GN:b1 (sfp)] [OR:Bacteriophage B1] [DB:genpept-phg] [DE:Bacteriophage


TP901-1 genomic region.] [NT:putative] [LE:<1] [RE:358] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26460951_c2_839
533
4305
792
263
917
5.0e−92










Description


pir:[LN:F69708] [AC:F69708] [PN:uridylate kinase smbA] [GN:smbA]


[CL:uridine 5′-monophosphate kinase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185242:g2634023] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:uridylate


kinase] [GN:smbA] [FN:pyrimidine biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.4.-] [DE:Bacillus subtilis complete genome


(section 9 of 21):from 1598421 to 1807200.] [LE:120774] [RE:121496]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26569432_f2_444
534
4306
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_26586537_f2_376
535
4307
156
51
70
0.028










Description


gp:[GI:d1045213:g5106116] [LN:AP000064] [AC:AP000064] [PN:125aa long


hypothetical protein] [GN:APE2412] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 7/7.] [LE:105148] [RE:105525] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_2734778_f1_31
536
4308
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_275427_c1_744
537
4309
1722
573
1379
5.5e−141










Description


pir:[LN:H69884] [AC:H69884] [PN:conserved hypothetical protein ymfA]


[GN:ymfA] [CL:conserved hypothetical protein MG139] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185269:g2634050] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ymfA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to hypothetical proteins] [LE:150509] [RE:152056] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_2931337_f2_256
538
4310
780
259
771
1.5e−76










Description


gp:[GI:g3800827] [LN:AF076684] [AC:AF076684] [PN:oligopeptide transporter


putative ATPase domain] [GN:opp-2D] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus oligopeptide transporter


putative membrane permease domain (opp-2B), oligopeptide transporter


putative membrane permease domain (opp-2C), oligopeptide transporter putative


ATPase domain (opp-2D), and oligopeptide transporter putative ATPase domain


(opp-2F) genes, complete cds.] [LE:1966] [RE:27421 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_29781968_c3_995
539
4311
855
284
825
2.8e−82










Description


sp:[LN:GLPF_BACSU] [AC:P18156] [GN:GLPF] [OR:BACILLUS SUBTILIS] [DE:GLYCEROL


UPTAKE FACILITATOR PROTEIN] [SP:P18156] [DB:swissprot] >pir:[LN:C47700]


[AC:C47700:A45868:B69634:S18563] [PN:glycerol uptake facilitator glpF]


[GN:glpF] [CL:glycerol facilitator protein] [OR:Bacillus subtilis]


[DB:pir2] [MP:75 (degrees)] >gp:[GI:g142997] [LN:BACGLPPFK] [AC:M99611]


[PN:glycerol uptake facilitator] [GN:glpF] [OR:Bacillus subtilis]


[SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


antiterminator regulatory protein (glpP), glycerol uptake facilitator (glpF)


genes, complete cds, glycerolkinase (glpK) gene, 5′ end.] [NT:putative]


[LE:1085] [RE:1909] [DI:direct] >gp:[GI:e1182917:g2633251] [LN:BSUB0005]


[AC:Z99108:AL009126] [PN:glycerol uptake facilitator] [GN:glpF] [FN:glycerol


utilization] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21):from 802821 to 1011250.] [SP:P18156]


[LE:199186] [RE:200010] [DI:direct] >gp:[GI:e1182929:g2633263] [LN:BSUB0006]


[AC:Z99109:AL009126] [PN:glycerol uptake facilitator] [GN:glpF] [FN:glycerol


utilization] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [SP:P18156]


[LE:2506] [RE:3330] [DI:direct] >gp:[GI:e324940:g2226136] [LN:BSY14079]


[AC:Y14079] [PN:putative glycerol uptake facilitator] [GN:glpF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 75


degrees:glpPFKDoperon and downstream.] [NT:see EMBL M99611 and Swiss Prot


P18156.] [SP:P18156] [LE:2154] [RE:2978] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_29886011_f2_248
540
4312
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_30355313_c1_779
541
4313
1113
370
382
2.5e−35










Description


pir:[LN:C69901] [AC:C69901] [PN:probable two-component sensor histidine


kinase yocF] [GN:yocF] [CL:probable Bacillus subtilis two-component sensor


histidine kinase yocF] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2619013]


[LN:AF027868] [AC:AF027868] [PN:sensor kinase] [GN:yocF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosome region between


terC and odhAB.] [NT:similar to B. subtilis DegS sensor kinase (385 aa)]


[LE:70568] [RE:71680] [DI:direct] >gp:[GI:e1185391:g2634312] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yocF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [NT:similar to two-component sensor histidine


kinase] [LE:89659] [RE:90771] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_30656317_c2_838
542
4314
822
273
858
8.9e−86










Description


pir:[LN:S61496] [AC:S61496:H69601] [PN:transcription pleiotropic repressor


codY] [GN:codY] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g535351]


[LN:BSU13634] [AC:U13634] [PN:CodY] [GN:codY] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis JH642 dipeptide permease operon


regulators, codV, codW, codX, and codY genes, complete cds.] [LE:3225]


[RE:4004] [DI:direct] >gp:[GI:e1185208:g2633989] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:transcriptional regulator] [GN:codY] [FN:negative


regulation of srfA and comK genes (in] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [SP:P39779] [LE:91098] [RE:91877] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_31275_c2_927
543
4315
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_31552_c1_755
544
4316
522
173
197
9.9e−16










Description


gp:[GI:d1045212:g5106115] [LN:AP000064] [AC:AP000064] [PN:197aa long


hypothetical protein] [GN:APE2411] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 7/7.] [NT:motif=G-protein coupled receptors signature] [LE:104943]


[RE:105536] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_31697151_c2_826
545
4317
315
104
441
1.4e−41










Description


sp:[LN:RL19_BACSU] [AC:O31742] [GN:RPLS] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L19] [SP:O31742] [DB:swissprot] >pir:[LN:E69696]


[AC:E69696] [PN:ribosomal protein L19 rplS] [GN:rplS] [CL:Escherichia coli


ribosomal protein L19] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185195:g2633976] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:ribosomal


protein L19] [GN:rplS] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[SP:O31742] [LE:77012] [RE:77368] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_31803760_f1_9
546
4318
153
50
43
0.031










Description


gp:[GI:e1347527:g3877915] [LN:CEF58G1] [AC:Z81556] [GN:F58G1.9]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid F58G1, complete sequence.] [NT:predicted using Genefinder]


[LE:13299:13426:13549] [RE:13379:13500:13656] [DI:direct Join]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_31844658_c3_987
547
4319
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3235828_c1_798
548
4320
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3257827_c2_858
549
4321
705
234
356
1.4e−32










Description


pir:[LN:H69885] [AC:H69885] [PN:3-oxoacyl-acyl-carrier protein reductase


homolog ymfI] [GN:ymfI] [CL:short-chain alcohol dehydrogenase homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185278:g2634059] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:ymfI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to 3-oxoacyl-acyl-carrier protein]


[LE:160607] [RE:161335] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_32611557_c3_966
550
4322
294
97
316
2.4e−28










Description


sp:[LN:EFTS_BACSU] [AC:P80700:O31748] [GN:TSF] [OR:BACILLUS SUBTILIS]


[DE:ELONGATION FACTOR TS (EF-TS)] [SP:P80700:O31748] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_33283167_c3_983
551
4323
1338
445
967
2.5e−97










Description


pir:[LN:G69885] [AC:G69885] [PN:processing proteinase homolog ymfH]


[GN:ymfH] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185277:g2634058]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:ymfH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to processing protease]


[LE:159305] [RE:160552] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_33375260_f2_273
552
4324
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3394390_f1_48
553
4325
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_34070261_c3_1010
554
4326
900
299
386
9.3e−36










Description


pir:[LN:A70039] [AC:A70039] [PN:ABC transporter (ATP-binding protein)


homolog yvfR] [GN:yvfR] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1186097:g2635922] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvfR] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:97865] [RE:98770] [DI:complement] >gp:[GI:e313073:g1945718]


[LN:BSZ94043] [AC:Z94043] [PN:hypothetical protein] [GN:yvfR] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).]


[NT:probable ABC transporter] [LE:82901] [RE:83806] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_34195135_c2_896
555
4327
1104
367
1236
7.8e−126










Description


sp:[LN:THRC_BACSU] [AC:P04990] [GN:THRC] [OR:BACILLUS SUBTILIS]


[EC:4.2.99.2] [DE:THREONINE SYNTHASE,] [SP:P04990] [DB:swissprot]


>pir:[LN:A25364] [AC:A25364:B31973:A69723] [PN:threonine synthase, thrC]


[GN:thrC] [CL:threonine dehydratase] [OR:Bacillus subtilis] [EC:4.2.99.2]


[DB:pir2] >gp:[GI:g40211] [LN:BSTHRBC] [AC:X04603] [PN:threonine synthase]


[GN:thrC] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.2.99.2] [DE:B.


subtilis thrB and thrC genes for homoserine kinase and threoninesynthase (EC


2.7.1.39 and EC 4.2.99.2, respectively).] [SP:P04990] [LE:248] [RE:1306]


[DI:direct] >gp:[GI:e1184304:g2635722] [LN:BSUB0017] [AC:Z99120:AL009126]


[PN:threonine synthase] [GN:thrC] [FN:threonine biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:4.2.99.2] [DE:Bacillus subtilis complete


genome (section 17 of 21):from 3197001 to 3414420.] [NT:alternate gene name:


thrB] [SP:P04990] [LE:115828] [RE:116886] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_34257817_c3_1038
556
4328
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_34571877_c1_746
557
4329
1275
424
484
3.8e−46










Description


gp:[GI:g3426364] [LN:AF082738] [AC:AF082738] [PN:unknown] [OR:Streptococcus


pyogenes] [DB:genpept-bct2] [DE:Streptococcus pyogenes


phosphotidylglycerophosphate synthase (pgsA) and ABC transporter ATP-binding


protein (stpA) genes, complete cds; and unknown genes.] [NT:orf1] [LE:1]


[RE:1245] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_34663177_c2_860
558
4330
1167
388
641
2.1e−65










Description


gp:[GI:g1842440] [LN:BSU87792] [AC:U87792] [PN:CinA] [GN:cinA] [FN:putative


competence-damage inducible function] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis tRNA-Ala,


phosphatidylglycerophosphate synthase(pgsA) and CinA (cinA) genes, complete


cds, and RecA (recA) gene, partial cds.] [LE:6007] [RE:7258] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_35187587_c3_1055
559
4331
588
195
370
4.6e−34










Description


pir:[LN:S34747] [AC:S34747] [PN:anthranilate synthase, component II]


[CL:glutamine amidotransferase:trpG homology] [OR:Thermotoga maritima]


[EC:4.1.3.27] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_35370318_c2_834
560
4332
930
309
1274
7.4e−130










Description


pir:[LN:F69719] [AC:F69719] [PN:succinate--CoA ligase (ADP-forming), alpha


chain] [GN:sucD] [CL:succinate--CoA ligase (ADP-forming) alpha chain]


[OR:Bacillus subtilis] [EC:6.2.1.5] [DB:pir2] >gp:[GI:e1185201:g2633982]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:succinyl-CoA synthetase (alpha


subunit)] [GN:sucD] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.2.1.5]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [SP:P80865] [LE:82596] [RE:83498] [DI:direct]


>gp:[GI:e332178:g2462968] [LN:BSYLQGCOD] [AC:AJ000975] [PN:putative


succinyl-coA synthetase alpha chain] [GN:sucD] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ylqg to codV gene region.]


[SP:P80865] [LE:1764] [RE:2666] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_35557787_c3_1073
561
4333
1275
424
842
4.4e−84










Description


gp:[GI:g4982084] [LN:AE001799] [AC:AE001799:AE000512] [PN:aspartokinase II]


[GN:TM1518] [OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga


maritima section 111 of 136 of the complete genome.] [NT:similar to


PID:928811 SP:P53553 percent identity:] [LE:15047] [RE:16252]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_36134401_c2_897
562
4334
831
276
315
3.1e−28










Description


sp:[LN:YXEH_BACSU] [AC:P54947] [GN:YXEH:IP1B] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 30.2 KD PROTEIN IN IDH-DEOR INTERGENIC REGION] [SP:P54947]


[DB:swissprot] >pir:[LN:B70075] [AC:B70075] [PN:conserved hypothetical


protein yxeH] [GN:yxeH] [CL:Methanobacterium thermoautotrophicum conserved


hypothetical protein MTH1071] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184680:g2636501] [LN:BSUB0021] [AC:Z99124:AL009126] [GN:yxeH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 21 of 21):from 3999281 to 4214814.] [NT:similar to


hypothetical proteins] [SP:P54947] [LE:63194] [RE:64006] [DI:complement]


>gp:[GI:d1008920:g14084933] [LN:D45912] [AC:D45912] [GN:yxeH] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (Marburg 168; trpC2)) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence between the iol and


hut operon, partial and complete cds.] [NT:homologous to SwissProt:YIDA_ECOLI


hypothetical] [LE:7470] [RE:8282] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_36142827_c1_814
563
4335
1812
603
780
1.6e−77










Description


gp:[GI:d1014255:g1651216] [LN:D88209] [AC:D88209] [PN:Pz-peptidase]


[OR:Bacillus licheniformis] [SR:Bacillus licheniformis (strain:N22) DNA]


[DB:genpept-bct1] [DE:Bacillus licheniformis DNA for Pz-peptidase, complete


cds.] [LE:238] [RE:2124] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_36220061_c3_964
564
4336
1425
474
1399
4.2e−143










Description


Sp:[LN:HSLU_BACSU] [AC:P39778] [GN:HSLU:CLPY:CODX] [OR:BACILLUS SUBTILIS]


[DE:HEAT SHOCK PROTEIN HSLU] [SP:P39778] [DB:swissprot] >pir:[LN:E69601]


[AC:E69601:S61495:S72310] [PN:ATP-dependent Clp proteinase-like protein


clpY:codX protein] [GN:clpY:codX] [CL:heat shock protein


hslU:FtsH/SEC18/CDC48-type ATP-binding domain homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g535350] [LN:BSU13634] [AC:U13634] [PN:CodX]


[GN:codX] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


JH642 dipeptide permease operon regulators, codV, codW, codX, and codY genes,


complete cds.] [LE:1782] [RE:3185] [DI:direct] >gp:[GI:e1185207:g2633988]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:ATP-dependent Clp protease-like]


[GN:clpY] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate


gene name:hslU, codX] [SP:P39778] [LE:89655] [RE:91058] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_36225938_c2_833
565
4337
1185
394
1557
7.6e−160










Description


sp:[LN:SUCC_BACSU] [AC:P80886] [GN:SUCC] [OR:BACILLUS SUBTILIS] [EC:6.2.1.5]


[DE:(VEGETATIVE PROTEIN 63) (VEG63)] [SP:P80886] [DB:swissprot]


>pir:[LN:E69719] [AC:E69719] [PN:succinate--CoA ligase (ADP-forming), beta


chain] [GN:sucC] [CL:succinate--CoA ligase (ADP-forming) beta chain]


[OR:Bacillus subtilis] [EC:6.2.1.5] [DB:pir2] >gp:[GI:e1185200:g2633981]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:succinyl-CoA synthetase (beta


subunit)] [GN:sucC] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.2.1.5]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [SP:P80886] [LE:81410] [RE:82567] [DI:direct]


>gp:[GI:e332177:g2462967] [LN:BSYLQGCOD] [AC:AJ000975] [PN:putative


succinyl-coA synthetase beta chain] [GN:sucC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ylqg to codV gene region.]


[SP:P80886] [LE:578] [RE:1735] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3913307_f3_640
566
4338
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3928177_f2_255
567
4339
360
119
91
0.00081










Description


gp:[GI:d1039115:g4514335] [LN:AB013370] [AC:AB013370] [PN:YndE] [GN:yndE]


[OR:Bacillus halodurans] [SR:Bacillus halodurans (strain:C-125) DNA]


[DB:genpept-bct1] [DE:Bacillus halodurans C-125 yndF, gerKA, yndF1 and yndF2


genes, partial and complete cds.] [LE:1025] [RE:1876] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3937551_c1_820
568
4340
999
332
803
6.0e−80










Description


pir:[LN:B70461] [AC:B70461] [PN:aspartate-semialdehyde dehydrogenase,]


[GN:asd] [CL:aspartate-semialdehyde dehydrogenase] [OR:Aquifex aeolicus]


[EC:1.2.1.11] [DB:pir2] >gp:[GI:g2984139] [LN:AE000760]


[AC:AE000760:AE000657] [PN:aspartate-semialdehyde dehydrogenase] [GN:asd]


[OR:Aquifex aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 92 of


109 of the complete genome.] [LE:7783] [RE:8805] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_3961702_c1_811
569
4341
1269
422
2249
3.5e−233










Description


pir:[LN:JC5325] [AC:JC5325:PC4317] [PN:methicillin resistance factor FEMA]


[GN:femA] [CL:methicillin resistance factor femA] [OR:Staphylococcus


epidermidis] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4025303_c2_923
570
4342
792
263
450
1.5e−42










Description


sp:[LN:TRPC_LACLA] [AC:Q01999] [GN:TRPC] [OR:LACTOCOCCUS LACTIS]


[SR:, SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.1.1.48] [DE:INDOLE-3-GLYCEROL


PHOSPHATE SYNTHASE, (IGPS)] [SP:Q01999] [DB:swissprot] >pir:[LN:S35127]


[AC:S35127] [PN:indole-3-glycerol-phosphate synthase,] [GN:trpC]


[CL:indole-3-glycerol-phosphate synthase:trpC homology] [OR:Lactococcus


lactis subsp. lactis] [EC:4.1.1.48] [DB:pir2] >gp:[GI:g149519] [LN:LACTRPOP]


[AC:M87483] [PN:indoleglycerol phosphate synthase] [GN:trpC] [OR:Lactococcus


lactis] [SR:Lactococcus lactis (strain IL1403, sub_species lactis) DNA]


[DB:genpept-bct1] [EC:4.1.1.48] [DE:L. lactis trpE, trpG, trpD, trpF, trpC,


trpB trpA genes, complete cds.] [LE:4089] [RE:4883] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4062762_f3_555
571
4343
405
134
508
1.1e−48










Description


gp:[GI:g3135292] [LN:AF029731] [AC:AF029731] [PN:large conductance


mechanosensitive channel] [GN:mscL] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus large conductance


mechanosensitive channel(mscL) gene, complete cds.] [NT:MscL] [LE:49]


[RE:411] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4063802_c1_808
572
4344
1497
498
808
1.8e−80










Description


sp:[LN:TRPE_LACLA] [AC:Q02001] [GN:TRPE] [OR:LACTOCOCCUS LACTIS]


[SR:, SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.1.3.27] [DE:ANTHRANILATE


SYNTHASE COMPONENT I,] [SP:Q02001] [DB:swissprot] >pir:[LN:S35124]


[AC:S35124] [PN:anthranilate synthase, alpha chain] [GN:trpE]


[CL:anthranilate synthase component I] [OR:Lactococcus lactis subsp. lactis]


[EC:4.1.3.27] [DB:pir2] >gp:[GI:g149516] [LN:LACTRPOP] [AC:M87483]


[PN:anthranilate synthase alpha subunit] [GN:trpE] [OR:Lactococcus lactis]


[SR:Lactococcus lactis (strain IL1403, sub_species lactis) DNA]


[DB:genpept-bct1] [EC:4.1.3.27] [DE:L. lactis trpE, trpG, trpD, trpF, trpC,


trpB trpA genes, complete cds.] [LE:954] [RE:2324] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_40686_c1_737
573
4345
4089
1362
6425
0.0










Description


sp:[LN:DPO3_STAAU] [AC:Q53665:Q57110] [GN:POLC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.7.7] [DE:DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE, (POLIII)]


[SP:Q53665:Q57110] [DB:swissprot] >gp:[GI:d1013849:g1483182] [LN:D86727]


[AC:D86727:D45368] [PN:DNA polymerase III] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:IP8) DNA, clone:pBpolC] [DB:genpept-bct1]


[DE:Staphylococcus aureus DNA for DNA polymerase III, complete cds.] [LE:34]


[RE:4341] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4069675_f2_274
574
4346
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4080342_c3_996
575
4347
1515
504
1998
1.4e−206










Description


sp:[LN:GLPK_BACSU] [AC:P18157] [GN:GLPK] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.30] [DE:(GLYCEROKINASE) (GK)] [SP:P18157] [DB:swissprot]


>pir:[LN:B45868] [AC:B45868:D47700:C69634:S18564] [PN:glycerol kinase,


glpK] [GN:glpK] [CL:xylulokinase] [OR:Bacillus subtilis] [EC:2.7.1.30]


[DB:pir2] [MP:75 (degrees)] >gp:[GI:g142992] [LN:BACGLPKD] [AC:M34393]


[OR:Bacillus subtilis] [SR:B. subtilis (strain W168) DNA] [DB:genpept-bct1]


[DE:B. subtilis glycerol kinase (glpK) and glycerol-3-phosphatedehydrogenase


(glpD) genes, complete cds.] [NT:glycerol kinase (glpK) (EC:2.7.1.30)]


[LE:698] [RE:2188] [DI:direct] >gp:[GI:e1182918:g2633252] [LN:BSUB0005]


[AC:Z99108:AL009126] [PN:glycerol kinase] [GN:glpK] [FN:glycerol


utilization] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.1.30]


[DE:Bacillus subtilis complete genome (section 5 of 21):from 802821


to 1011250.] [SP:P18157] [LE:200029] [RE:201519] [DI:direct]


>gp:[GI:e1182930:g2633264] [LN:BSUB0006] [AC:Z99109:AL009126] [PN:glycerol


kinase] [GN:glpK] [FN:glycerol utilization] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.1.30] [DE:Bacillus subtilis complete genome


(section 6 of 21):from 999501 to 1209940.] [SP:P18157] [LE:3349] [RE:4839]


[DI:direct] >gp:[GI:e324941:g2226137] [LN:BSY14079] [AC:Y14079] [PN:glycerol


kinase] [GN:glpK] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 75 degrees:glpPFKDoperon and downstream.]


[NT:see EMBL M34393 and Swiss Prot P18157.] [SP:P18157] [LE:2997] [RE:4487]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4089062_c2_906
576
4348
1176
391
380
4.0e−35










Description


pir:[LN:C71302] [AC:C71302] [PN:probable exonuclease] [GN:TP0626]


[OR:Treponema pallidum subsp. pallidum] [SR:, syphilis spirochete] [DB:pir2]


>gp:[GI:g3322921] [LN:AE001237] [AC:AE001237:AE000520] [PN:exonuclease,


putative] [GN:TP0626] [OR:Treponema pallidum] [DB:genpept-bct2]


[DE:Treponema pallidum section 53 of 87 of the complete genome.] [NT:similar


to SP:P23479 percent identity:32.68;] [LE:11246] [RE:12421] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4093818_c2_859
577
4349
591
196
436
4.7e−41










Description


sp:[LN:PGSA_BACSU] [AC:P46322] [GN:PGSA] [OR:BACILLUS SUBTILIS] [EC:2.7.8.5]


[DE:(EC 2.7.8.5) (PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE) (PGP SYNTHASE)]


[SP:P46322] [DB:swissprot] >gp:[GI:d1009402:g893358] [LN:BACPGS1A]


[AC:D50064] [PN:PgsA] [GN:pgs1A] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:Marburg168) DNA] [DB:genpept-bct1] [EC:2.7.8.5]


[DE:Bacillus subtilis pgs1A gene for phosphatidylglycerophosphatesynthase,


complete cds.] [LE:182] [RE:763] [DI:direct] >gp:[GI:g1842439] [LN:BSU87792]


[AC:U87792] [PN:phosphatidylglycerophosphate synthase] [GN:pgsA]


[FN:involved in the synthetic pathway for acidic] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis tRNA-Ala,


phosphatidylglycerophosphate synthase(pgsA) and CinA (cinA) genes, complete


cds, and RecA (recA) gene, partial cds.] [NT:PgsA] [LE:5407] [RE:5990]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4095286_c2_869
578
4350
375
124
246
6.4e−21










Description


pir:[LN:C69884] [AC:C69884] [PN:conserved hypothetical protein ymcA]


[GN:ymcA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185293:g2634074]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:ymcA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to hypothetical proteins]


[LE:175322] [RE:175753] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4334383_f2_322
579
4351
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4336536_c1_739
580
4352
315
104
211
3.3e−17










Description


sp:[LN:YLXR_BACSU] [AC:P32728] [GN:YLXR] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 10.4 KD PROTEIN IN NUSA-INFB INTERGENIC REGION (ORF3)]


[SP:P32728] [DB:swissprot] >pir:[LN:D36905] [AC:D36905:D69882:S31992]


[PN:conserved hypothetical protein ylxR:hypothetical protein 1 (nusA 3′


region)] [GN:ylxR] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g580900]


[LN:BSORF1T7A] [AC:Z18631] [GN:ORF3] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis infB-nusA operon.] [SP:P32728] [LE:2090]


[RE:2365] [DI:direct] >gp:[GI:e1185252:g2634033] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:ylxR] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene name:ymxB; similar to


hypothetical] [SP:P32728] [LE:134381] [RE:134656] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4414675_c1_783
581
4353
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4425068_f2_474
582
4354
2613
870
880
4.2e−88










Description


pir:[LN:G69801] [AC:G69801] [PN:hypothetical protein yfhO] [GN:yfhO]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182850:g2633184] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfhO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:128691] [RE:131150] [DI:direct]


>gp:[GI:d1025397:g2804545] [LN:D85082] [AC:D85082] [PN:YfhO] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:21582] [RE:24041]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4460063_f1_150
583
4355
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_447326_c2_871
584
4356
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4493778_c3_952
585
4357
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4572162_c3_970
586
4358
1290
429
932
1.3e−93










Description


pir:[LN:C69881] [AC:C69881] [PN:conserved hypothetical protein yluC]


[GN:yluC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185247:g2634028]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:yluC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to hypothetical proteins]


[LE:125000] [RE:126268] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4687825_c3_955
587
4359
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4719011_c2_841
588
4360
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4740932_c1_825
589
4361
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4798453_c1_790
590
4362
1026
341
242
2.7e−27










Description


pir:[LN:H69873] [AC:H69873] [PN:conserved hypothetical protein ylbC]


[GN:ylbC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334771:g2339999]


[LN:BS16823KB] [AC:Z98682] [PN:YlbC protein] [GN:ylbC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:11510] [RE:12550] [DI:direct] >gp:[GI:e1185086:g2633867]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins from


B. subtilis] [LE:170993] [RE:172033] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4884675_c3_1057
591
4363
1212
403
1268
3.2e−129










Description


sp:[LN:TRPB_LACLA] [AC:Q01998] [GN:TRPB] [OR:LACTOCOCCUS LACTIS]


[SR:, SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.2.1.20] [DE:TRYPTOPHAN SYNTHASE


BETA CHAIN,] [SP:Q01998] [DB:swissprot] >pir:[LN:S35129] [AC:S35129]


[PN:tryptophan synthase, beta chain] [GN:trpB] [CL:tryptophan synthase beta


chain:tryptophan synthase beta chain homology] [OR:Lactococcus lactis subsp.


lactis] [EC:4.2.1.20] [DB:pir2] >gp:[GI:g149521] [LN:LACTRPOP] [AC:M87483]


[PN:tryptophan synthase beta subunit] [GN:trpB] [OR:Lactococcus lactis]


[SR:Lactococcus lactis (strain IL1403, sub_species lactis) DNA]


[DB:genpept-bct1] [EC:4.2.1.20] [DE:L. lactis trpE, trpG, trpD, trpF, trpC,


trpB trpA genes, complete cds.] [LE:6514] [RE:7722] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4890802_f2_275
592
4364
1152
383
819
1.2e−81










Description


sp:[LN:TYRA_BACSU] [AC:P20692] [GN:TYRA] [OR:BACILLUS SUBTILIS]


[EC:1.3.1.12] [DE:PREPHENATE DEHYDROGENASE, (PDH)] [SP:P20692]


[DB swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4891577_c2_879
593
4365
582
193
453
7.4e−43










Description


pir:[LN:G69657] [AC:G69657] [PN:tRNA isopentenylpyrophosphate transferase


miaA] [GN:miaA] [CL:delta(2)-isopentenylpyrophosphate transferase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183392:g2634117] [LN:BSUB0010]


[AC:Z99113:AL009126] [PN:tRNA isopentenylpyrophosphate transferase]


[GN:miaA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [LE:84430]


[RE:85374] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4942202_c3_1058
594
4366
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_4964686_f3_520
595
4367
204
67
195
1.6e−15










Description


pir:[LN:C70057] [AC:C70057] [PN:4-oxalocrotonate tautomerase homolog ywhB]


[GN:ywhB] [CL:4-oxalocrotonate tautomerase] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e267624:g1565237] [LN:BSTHRZ] [AC:Z80360] [PN:Unknown,


highly similar to Pseudomonas putida] [GN:ywhB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis thrZ downstream chromosomal region.]


[LE:2388] [RE:2576] [DI:complement] >gp:[GI:e1186254:g2636290] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywhB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:similar to 4-oxalocrotonate tautomerase]


[LE:54138] [RE:54326] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5109378_f3_546
596
4368
615
204
469
1.5e−44










Description


pir:[LN:A69892] [AC:A69892] [PN:conserved hypothetical protein yneS]


[GN:yneS] [CL:Escherichia coli ygiH protein] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e249655:g1405459] [LN:BC170DEGR] [AC:Z73234] [PN:YneS]


[GN:yneS] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis DNA (26.2


kb fragment; 170 degree region).] [NT:similar to hypothetical protein MG247


from] [LE:13596] [RE:14177] [DI:complement] >gp:[GI:e1183465:g2634190]


[LN:BSUB0010] [AC:Z99113:AL009126] [GN:yneS] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


10 of 21):from 1781201 to 2014980.] [NT:similar to hypothetical proteins]


[LE:149975] [RE:150556] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5109625_c3_1011
597
4369
372
123
258
3.4e−22










Description


pir:[LN:D70039] [AC:D70039] [PN:two-component response regulator [YvfT]


homolog yvfU] [GN:yvfU] [CL:regulatory protein comA:response regulator


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186094:g2635919]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvfU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to two-component response


regulator [YvfT] [LE:95389] [RE:95991] [DI:complement]


>gp:[GI:e313075:g1945721] [LN:BSZ94043] [AC:Z94043] [PN:hypothetical


protein] [GN:yvfU] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic DNA fragment (88 kb).] [NT:probable two component regulatory


system:] [LE:85680] [RE:86282] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5120635_c2_903
598
4370
240
79
76
0.026










Description


sp:[LN:F801_SCHMA] [AC:P16463] [OR:SCHISTOSOMA MANSONI] [SR:, BLOOD FLUKE]


[DE:FEMALE SPECIFIC 800 PROTEIN (FS800)] [SP:P16463] [DB:swissprot]


>gp:[GI:g160990] [LN:SCMFS800] [AC:J03999] [PN:female-specific 800 protein]


[GN:fs800] [OR:Schistosoma mansoni] [SR:Schistosoma mansoni (strain Puerto


Rican) cDNA to mRNA] [DB:genpept-inv1] [DE:Schistosoma mansoni


female-specific 800 protein (fs800) mRNA, complete cds.] [NT:putative] [LE:4]


[RE:720] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5195328_c1_749
599
4371
393
130
142
2.3e−09










Description


gp:[GI:g1842438] [LN:BSU87792] [AC:U87792] [PN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis tRNA-Ala,


phosphatidylglycerophosphate synthase(pgsA) and CinA (cinA) genes, complete


cds, and RecA (recA) gene, partial cds.] [NT:ORF307; hypothetical 34.7 kd


protein] [LE:4436] [RE:5359] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5198557_c1_734
600
4372
801
266
847
1.3e−84










Description


gp:[GI:d1032955:g3358087] [LN:AB004319] [AC:AB004319] [PN:undecaprenyl


diphosphate synthase] [GN:upps] [OR:Micrococcus luteus] [SR:Micrococcus


luteus (strain:B-P 26) DNA] [DB:genpept-bct1] [DE:Micrococcus luteus DNA for


undecaprenyl diphosphate synthase, complete cds.] [LE:1] [RE:750] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5212776_c2_832
601
4373
867
288
839
9.2e−84










Description


pir:[LN:F69880] [AC:F69880] [PN:conserved hypothetical protein ylqF]


[GN:ylqF] [CL:conserved hypothetical protein MG442] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185196:g2633977] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ylqF] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to hypothetical proteins] [LE:77511] [RE:78359] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_5355012_c1_770
602
4374
1359
452
2274
7.9e−236










Description


sp:[LN:GLNA_STAAU] [AC:Q59812] [GN:GLNA] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.3.1.2] [DE:GLUTAMINE SYNTHETASE, (GLUTAMATE--AMMONIA LIGASE) (GS)]


[SP:Q59812] [DB:swissprot] >gp:[GI:e214721:g1134886] [LN:SAGLNAR]


[AC:X76490] [PN:glutamine synthetase] [GN:glnA] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus (bb270) glnA and glnR genes.] [SP:Q59812]


[LE:1362] [RE:2702] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_553455_f3_540
603
4375
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6258588_c1_802
604
4376
1470
489
1305
3.8e−133










Description


sp:[LN:ALST_BACSU] [AC:Q45068] [GN:ALST] [OR:BACILLUS SUBTILIS] [DE:AMINO


ACID CARRIER PROTEIN ALST] [SP:Q45068] [DB:swissprot] >pir:[LN:A69585]


[AC:A69585] [PN:amino acid carrier protein alsT] [GN:alsT]


[CL:sodium-dependent D-alanine/glycine transport protein] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e249660:g1405464] [LN:BC170DEGR] [AC:Z73234]


[PN:AlsT] [GN:alsT] [FN:amino acid carrier protein] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis DNA (26.2 kb fragment; 170 degree region).]


[NT:similar to sodium/proton dependent alanine carrier] [SP:Q45068]


[LE:20601] [RE:21998] [DI:direct] >gp:[GI:e1183470:g2634195] [LN:BSUB0010]


[AC:Z99113:AL009126] [PN:amino acid carrier protein] [GN:alsT] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


10 of 21):from 1781201 to 2014980.] [SP:Q45068] [LE:156980] [RE:158377]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6416566_c1_800
605
4377
2031
676
3180
0.0










Description


sp:[LN:PARE_STAAU] [AC:P50072] [GN:PARE:GRLB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:5.99.1.-] [DE:TOPOISOMERASE IV SUBUNIT B,] [SP:P50072] [DB:swissprot]


>pir:[LN:S54426] [AC:S54426] [PN:DNA topoisomerase (ATP-hydrolyzing), chain


B] [CL:DNA topoisomerase (ATP-hydrolyzing) chain B] [OR:Staphylococcus


aureus] [EC:5.99.1.3] [DB:pir2] >gp:[GI:d1011746:g1777320] [LN:D67075]


[AC:D67075] [PN:DNA topoisomerase IV GrlB subunit] [GN:grlB]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (isolate:RN4220) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus DNA for DNA topoisomerase IV


GrlB subunit, DNA topoisomerase IV GrlA subunit, complete cds.] [LE:385]


[RE:2376] [DI:direct] >gp:[GI:g561879] [LN:STAGYRASL] [AC:L25288]


[PN:gyrase-like protein beta subunit] [GN:grlB] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (tissue library:FDA 574) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus gyrase-like protein alpha and beta subunit(grlA


and grlB) genes, complete cds.] [LE:41] [RE:2032] [DI:direct]


>gp:[GI:e306312:g2302281] [LN:A48501] [AC:A48501] [OR:Staphylococcus aureus]


[DB:genpept-pat] [DE:Sequence 3 from Patent W09603516.] [NT:unnamed protein


product] [LE:1] [RE:1992] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6525_f3_577
606
4378
1035
344
729
4.2e−72










Description


sp:[LN:LYSP_ECOLI] [AC:P25737] [GN:LYSP:CADR] [OR:ESCHERICHIA COLI]


[DE:LYSINE-SPECIFIC PERMEASE] [SP:P25737] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6641963_c3_1009
607
4379
1485
494
1302
8.0e−133










Description


sp:[LN:YWNE_BACSU] [AC:P71040] [GN:YWNE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 55.8 KD PROTEIN IN SPOIIQ-MTA INTERGENIC REGION]


[SP:P71040] [DB:swissprot] >pir:[LN:G70063] [AC:G70063] [PN:cardiolipin


synthase homolog ywnE] [GN:ywnE] [CL:Bacillus probable cardiolipin


synthetase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184565:g2636184]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywnE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21):from 3597091 to 3809700.] [NT:similar to cardiolipin synthase]


[SP:P71040] [LE:164628] [RE:166076] [DI:direct] >gp:[GI:e269549:g1592701]


[LN:BSUEROP] [AC:Y08559] [PN:Unknown] [GN:ywnE] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis urease operon and downstream DNA.]


[NT:Product similar to Escherichia coli cardiolipin] [SP:P71040] [LE:5155]


[RE:6603] [DI:complement] >gp:[GI:e1184565:g2636184] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywnE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:similar to cardiolipin synthase] [SP:P71040]


[LE:164628] [RE:166076] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6664127_c2_940
608
4380
438
145










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6678140_c3_972
609
4381
348
115
328
3.8e−28










Description


pir:[LN:S52267] [AC:S52267] [PN:DNA polymerase III] [CL:DNA-directed DNA


polymerase III alpha chain polC] [OR:Staphylococcus aureus] [DB:pir2]


>gp:[GI:g642270] [LN:SADNAPOL3] [AC:Z48003:L39156] [PN:DNA polymerase III]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus gene for DNA


polymerase III.] [SP:Q53665] [LE:34] [RE:4281] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6688126_c1_751
610
4382
1074
357
1661
7.2e−171










Description


sp:[LN:RECA_STAAU] [AC:Q02350] [GN:RECA] [OR:STAPHYLOCOCCUS AUREUS] [DE:RECA


PROTEIN] [SP:Q02350] [DB:swissprot] >gp:[GI:g463285] [LN:STARECAA]


[AC:L25893] [GN:recA] [FN:genetic recombination] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


recA gene, complete cds.] [NT:putative] [LE:16] [RE:1059] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_673437_f3_529
611
4383
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6818827_c3_1072
612
4384
1608
535
2088
4.1e−216










Description


pir:[LN:E69861] [AC:E69861] [PN:ABC transporter (ATP-binding protein)


homolog ykpA] [GN:ykpA] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185033:g2633814] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykpA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:116988] [RE:118610] [DI:direct] >gp:[GI:g3282128]


[LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:YkpA] [GN:ykpA] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE gene region.]


[NT:similar to E. coli hypothetical ABC transporter] [LE:17476] [RE:19098]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6837812_c1_735
613
4385
786
261
611
1.3e−59










Description


sp:[LN:CDSA_BACSU] [AC:O31752] [GN:CDSA] [OR:BACILLUS SUBTILIS]


[EC:2.7.7.41] [DE:SYNTHASE)] [SP:O31752] [DB:swissprot] >pir:[LN:G69597]


[AC:G69597] [PN:phosphatidate cytidylyltransferase cdsA] [GN:cdsA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185245:g2634026] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:phosphatidate cytidylyltransferase] [GN:cdsA]


[FN:phospholipid biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.7.7.41] [DE:Bacillus subtilis complete genome (section 9 of 21):from


1598421 to 1807200.] [SP:O31752] [LE:122972] [RE:123781] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6929652_c1_822
614
4386
744
247
683
3.1e−67










Description


pir:[LN:F69866] [AC:F69866] [PN:tetrahydrodipicolinate succinylase homolog


ykuQ] [GN:ykuQ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181922:g2632238]


[LN:BS16829KB] [AC:AJ222587] [PN:YkuQ protein] [GN:ykuQ] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 29kB DNA fragment from


ykwC gene to cse15 gene.] [NT:homologous to acetyltransferases] [LE:23332]


[RE:24042] [DI:direct] >gp:[GI:e1185008:g2633789] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykuQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [NT:similar to tetrahydrodipicolinate succinylase]


[LE:93588] [RE:94298] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6929677_c1_766
615
4387
258
85
187
1.1e−14










Description


pir:[LN:B69884] [AC:B69884] [PN:host factor-1 protein homolog ymaH]


[GN:ymaH] [CL:host factor I] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183393:g2634118] [LN:BSUB0010] [AC:Z99113:AL009126] [GN:ymaH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [NT:similar to


host factor-1 protein] [LE:85414] [RE:856351 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_6933390_c1_759
616
4388
552
183
402
1.9e−37










Description


sp:[LN:GLPP_BACSU] [AC:P30300] [GN:GLPP] [OR:BACILLUS SUBTILIS] [DE:GLYCEROL


UPTAKE OPERON ANTITERMINATOR REGULATORY PROTEIN] [SP:P30300] [DB:swissprot]


>pir:[LN:B47700] [AC:B47700:D69634] [PN:glycerol metabolism regulatory


protein GlpP] [GN:glpP] [OR:Bacillus subtilis] [DB:pir2] [MP:75 (degrees)]


>gp:[GI:g142996] [LN:BACGLPPFK] [AC:M99611] [PN:regulatory protein]


[GN:glpP] [FN:putative antiterminator] [OR:Bacillus subtilis] [SR:Bacillus


subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis antiterminator


regulatory protein (glpP), glycerol uptake facilitator (glpF) genes, complete


cds, glycerolkinase (glpK) gene, 5′ end.] [LE:328] [RE:906] [DI:direct]


>gp:[GI:e1182916:g2633250] [LN:BSUB0005] [AC:Z99108:AL009126]


[PN:transcription antiterminator] [GN:glpP] [FN:control of mRNA stability of


glpD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21):from 802821 to 1011250.] [SP:P30300]


[LE:198429] [RE:199007] [DI:direct] >gp:[GI:e1182928:g2633262] [LN:BSUB0006]


[AC:Z99109:AL009126] [PN:transcription antiterminator] [GN:glpP] [FN:control


of mRNA stability of glpD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 6 of 21):from 999501


to 1209940.] [SP:P30300] [LE:1749] [RE:2327] [DI:direct]


>gp:[GI:e324939:g2226135] [LN:BSY14079] [AC:Y14079] [PN:regulatory protein]


[GN:glpP] [FN:putative antiterminator] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 75 degrees:


glpPFKDoperon and downstream.] [NT:see EMBL M99611 and Swiss Prot P30300.]


[SP:P30300] [LE:1397] [RE:1975] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_7064077_c1_740
617
4389
2187
728
2508
1.3e−260










Description


sp:[LN:IF2_BACSU] [AC:P17889:O31757] [GN:INFB] [OR:BACILLUS SUBTILIS]


[DE:TRANSLATION INITIATION FACTOR IF-2] [SP:P17889:O31757] [DB:swissprot]


>pir:[LN:A35269] [AC:A35269:B35269:S31994:G69644] [PN:translation


initiation factor IF-2] [GN:infB] [CL:translation initiation factor


IF-2:translation elongation factor Tu homology] [OR:Bacillus subtilis]


[DB:pir1] >gp:[GI:g143359] [LN:BACPSIF2A] [AC:M34836] [OR:Bacillus subtilis]


[SR:B. subtilis (strain RS410) DNA, clones lambda-JET[1, 2], pUK, an]


[DB:genpept-bct1] [DE:B. subtilis protein synthesis initiation factor 2


(infB) gene, complete cds.] [NT:protein synthesis initiation factor 2 (infB)]


[LE:381] [RE:2531] [DI:direct] >gp:[GI:g49319] [LN:BSORF1T7A] [AC:Z18631]


[GN:IF2] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis infB-nusA


operon.] [SP:P17889] [LE:2689] [RE:4839] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_7203176_c1_810
618
4390
801
266
426
5.4e−40










Description


sp:[LN:TRPA_METJA] [AC:Q60180] [GN:TRPA:MJ1038] [OR:METHANOCOCCUS


JANNASCHII] [EC:4.2.1.20] [DE:TRYPTOPHAN SYNTHASE ALPHA CHAIN,] [SP:Q60180]


[DB:swissprot] >pir:[LN:E64429] [AC:E64429] [PN:tryptophan synthase, alpha


chain] [CL:tryptophan synthase alpha chain:tryptophan synthase alpha chain


homology] [OR:Methanococcus jannaschii] [EC:4.2.1.20] [DB:pir2]


[MP:FOR969735–970589] >gp:[GI:g1591691] [LN:U67546] [AC:U67546:L77117]


[PN:tryptophan synthase alpha subunit (trpA)] [GN:MJ1038] [OR:Methanococcus


jannaschii] [DB:genpept-bct2] [DE:Methanococcus jannaschii section 88 of 150


of the complete genome.] [NT:similar to GB:M65060 SP:P26920 PID:149750]


[LE:5837] [RE:6691] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_7242250_c2_924
619
4391
681
226
306
2.8e−27










Description


gp:[GI:g5002553] [LN:AF074603] [AC:AF074603] [PN:NonF] [GN:nonF]


[OR:Streptomyces griseus subsp. griseus] [DB:genpept-bct2] [DE:Streptomyces


griseus subsp. griseus nonactin biosynthesis gene cluster, partial sequence.]


[LE:12384] [RE:13088] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_801552_f2_228
620
4392
381
126
74
0.011










Description


gp:[GI:g2454643] [LN:AF020905] [AC:AF020905] [PN:E5] [GN:E5] [OR:common


chimpanzee papillomavirus 1] [DB:genpept-vrl] [DE:Common chimpanzee


papillomavirus 1, complete genome.] [LE:3901] [RE:4185] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_835252_f1_13
621
4393
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_837550_c2_914
622
4394
246
81










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_869052_c2_876
623
4395
1677
558
1700
5.3e−175










Description


sp:[LN:GLPD_BACSU] [AC:P18158] [GN:GLPD] [OR:BACILLUS SUBTILIS]


[EC:1.1.99.5] [DE:AEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE,] [SP:P18158]


[DB:swissprot] >pir:[LN:C45868] [AC:C45868:A69634:S18565]


[PN:glycerol-3-phosphate dehydrogenase, glpD] [GN:glpD] [OR:Bacillus


subtilis] [EC:1.1.99.5] [DB:pir2] >gp:[GI:g142993] [LN:BACGLPKD] [AC:M34393]


[OR:Bacillus subtilis] [SR:B. subtilis (strain W168) DNA] [DB:genpept-bct1]


[DE:B. subtilis glycerol kinase (glpK) and glycerol-3-phosphatedehydrogenase


(glpD) genes, complete cds.] [NT:glycerol-3-phosphate dehydrogenase (glpD]


[EC] [LE:2329] [RE:3996] [DI:direct] >gp:[GI:e1182919:g2633253]


[LN:BSUB0005] [AC:Z99108:AL009126] [PN:glycerol-3-phosphate dehydrogenase]


[GN:glpD] [FN:glycerol utilization] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.1.99.5] [DE:Bacillus subtilis complete genome (section 5 of 21):from


802821 to 1011250.] [SP:P18158] [LE:201660] [RE:203327] [DI:direct]


>gp:[GI:e1182931:g2633265] [LN:BSUB0006] [AC:Z99109:AL009126]


[PN:glycerol-3-phosphate dehydrogenase] [GN:glpD] [FN:glycerol utilization]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.1.99.5] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [SP:P18158]


[LE:4980] [RE:6647] [DI:direct] >gp:[GI:e324942:g2226138] [LN:BSY14079]


[AC:Y14079] [PN:glycerol-3-phosphate dehydrogenase] [GN:glpD] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 75


degrees:glpPFKDoperon and downstream.] [NT:see EMBL M34393 and Swiss Prot


P18158.] [SP:P18158] [LE:4628] [RE:6295] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_891700_c2_865
624
4396
867
288
599
2.5e−58










Description


pir:[LN:S22397] [AC:522397] [PN:pyruvate synthase, beta chain] [CL:pyruvate


synthase beta chain] [OR:Halobacterium halobium] [EC:1.2.7.1] [DB:pir2]


>gp:[GI:g43499] [LN:HHFEROXI] [AC:X64521] [PN:ferredoxin oxidoreductase]


[OR:Halobacterium halobium] [DB:genpept-bct1] [EC:1.2.7.1] [DE:H. halobium


gene for pyruvate:ferredoxin oxidoreductase.] [NT:beta-subunit; pyruvate


synthase] [LE:2057] [RE:2995] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_892186_f1_171
625
4397
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_893826_f2_384
626
4398
123
40
49
0.031










Description


pir:[LN:D64600] [AC:D64600] [PN:conserved hypothetical integral membrane


protein HP0644] [OR:Helicobacter pylori] [DB:pir2] >gp:[GI:g2313764]


[LN:AE000578] [AC:AE000578:AE000511] [PN:conserved hypothetical integral


membrane] [GN:HP0644] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 56 of 134 of the complete genome.]


[NT:similar to SP:P25254 percent identity:30.26;] [LE:6414] [RE:6707]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9767263_c2_866
627
4399
639
212
280
1.6e−24










Description


pir:[LN:A69922] [AC:A69922] [PN:phage-related replication protein homolog


yoqZ] [GN:yoqZ] [CL:phage-related replication protein] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185518:g2634439] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yoqZ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [NT:similar to phage-related protein] [LE:189032]


[RE:189856] [DI:complement] >gp:[GI:g3025599] [LN:AF020713] [AC:AF020713]


[GN:yoqZ] [OR:Bacteriophage SPBc2] [DB:genpept-phg] [DE:Bacteriophage SPBc2


complete genome.] [NT:similar to bacteriophage SPP1 ORF37.1 product]


[LE:95664] [RE:96488] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_978450_c1_804
628
4400
2049
682
965
4.1e−97










Description


gp:[GI:d1025380:g2804528] [LN:D85082] [AC:D85082] [PN:YfiX] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:7094] [RE:8926]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9798180_c1_792
629
4401
204
67










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9804202_c1_732
630
4402
627
208
704
1.9e−69










Description


pir:[LN:B69727] [AC:B69727] [PN:translation elongation factor EF-Ts tsf]


[GN:tsf] [CL:translation elongation factor EF-Ts] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185241:g2634022] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:elongation factor Ts] [GN:tsf] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to


1807200.] [SP:P80700] [LE:119747] [RE:120628] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9807807_c1_748
631
4403
873
290
522
3.6e−50










Description


gp:[GI:g1842437] [LN:BSU87792] [AC:U87792] [PN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis tRNA-Ala,


phosphatidylglycerophosphate synthase(pgsA) and CinA (cinA) genes, complete


cds, and RecA (recA) gene, partial cds.] [NT:hypothetical 17.9 kDa protein;


ORF158] [LE:3676] [RE:4152] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9814213_f3_499
632
4404
471
156
232
1.9e−19










Description


pir:[LN:C69419] [AC:C69419] [PN:phosphate ABC transporter, periplasmic


phosphate-binding protein (phoX) homolog] [CL:sphX protein]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649219] [LN:AE001010]


[AC:AE001010:AE000782] [PN:phosphate ABC transporter, periplasmic]


[GN:AF1356] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus


fulgidus section 97 of 172 of the complete genome.] [NT:similar to


PID:1052826 percent identity:25.09;] [LE:4300] [RE:5283] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_9862675_f2_310
633
4405
135
44










Description


NO-HIT



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000983_995967_c2_888
634
4406
747
248
341
5.4e−31










Description


pir:[LN:B70039] [AC:B70039] [PN:hypothetical protein yvfS] [GN:yvfS]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186096:g2635921] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvfS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [LE:97127] [RE:97864] [DI:complement]


>gp:[GI:e313010:g1945719] [LN:BSZ94043] [AC:Z94043] [PN:hypothetical


protein] [GN:yvfS] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic DNA fragment (88 kb).] [NT:probable permease] [LE:83807] [RE:84544]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10017151_f3_388
635
4407
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10039050_f1_17
636
4408
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10193760_f1_89
637
4409
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10553125_f3_371
638
4410
810
269
335
1.6e−31










Description


gp:[GI:g211700] [LN:CHKCX] [AC:M13496] [PN:type X collagen] [OR:Gallus


gallus] [SR:Chicken red blood cell DNA, clone pYN92E1; and embryo


chondrocyte] [DB:genpept-vrt] [DE:Chicken type X collagen gene.] [LE:<380]


[RE:2208] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10665903_c1_491
639
4411
378
125
151
6.0e−10










Description


sp:[LN:YCGC_ECOLI] [AC:P37349:P76013] [GN:YCGC] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 51.6 KD PROTEIN IN TREA-PTH INTERGENIC REGION]


[SP:P37349:P76013] [DB:swissprot] >pir:[LN:C64866] [AC:C64866


[PN:trehalase precursor] [GN:ycgC] [CL:phosphotransferase system


phosphohistidine-containing protein homology] [OR:Escherichia coli]


[DB:pir2] >gp:[GI:d1037041:g4062781] [LN:D90754] [AC:D90754:AB001340]


[PN:Hypothetical protein in treA 5′region.] [GN:ycgC] [OR:Escherichia coli]


[SR:Escherichia coli(strain:K12) DNA, clone:Kohara clone #245]


[DB:genpept-bct1] [DE:Escherichia coli genomic DNA. (26.8–27.1 mm).]


[NT:ORF_ID:o245#7; similar to SwissProt Accession] [LE:9793] [RE:11214]


[DI:complement] >gp:[GI:g1787448] [LN:AE000218] [AC:AE000218:U00096]


[PN:putative PTS system enzyme I] [GN:ycgC] [FN:putative transport; Not


classified] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 108 of 400 of the complete genome.] [NT:f473; 100 pct


identical to fragment YCGC_ECOLI] [LE:3099] [RE:4520] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_10828312_f1_104
640
4412
1617
538
272
1.2e−20










Description


pir:[LN:D69796] [AC:D69796] [PN:two-component sensor histidine kinase


homolog yesM] [GN:yesM] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182674:g2633008] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yesM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21):from 600701 to 813890.] [NT:similar to


two-component sensor histidine kinase] [LE:157527] [RE:159260] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_1182765_c3_673
641
4413
7215
2404
2909
0.0










Description


gp:[GI:g2982196] [LN:AF007865] [AC:AF007865] [PN:bacitracin synthetase 3]


[GN:bacC] [OR:Bacillus licheniformis] [DB:genpept-bct2] [DE:Bacillus


licheniformis bacitracin synthetase operon, complete sequence; BacS (bacS),


BcrA (bcrA), BcrB (bcrB), and BcrC (bcrC) genes, complete cds.] [NT:peptide


synthetase; BA3; BacC] [LE:25258] [RE:44337] (DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_11832518_c2_558
642
4414
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_11895058_c1_444
643
4415
939
312
164
5.1e−10










Description


pir:[LN:S25140] [AC:S25140] [PN:serine proteinase homolog] [OR:Enterococcus


faecalis] [DB:pir2] >gp:[GI:g43338] [LN:EFSPREG] [AC:Z12296]


[PN:Staphylococcal serine proteinase homologue] [GN:sprE] [OR:Enterococcus


faecalis] [DB:genpept-bct1] [DE:E. faecalis sprE gene for serine proteinase


homologue.] [LE:91] [RE:945] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_12554627_c3_625
644
4416
216
71










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_1367200_f2_264
645
4417
624
207
104
0.00095










Description


Sp:[LN:VS10_ROTBS] [AC:P34718] [GN:S10] [OR:BOVINE ROTAVIRUS] [SR:GROUP C/


SHINTOKU,] [DE:MINOR OUTER CAPSID PROTEIN (NS26)] [SP:P34718] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_1367202_c1_489
646
4418
963
320
516
1.1e−60










Description


pir:[LN:E64866] [AC:E64866] [PN:hypothetical protein b1200] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:d1037043:g4062783] [LN:D90754] [AC:D90754:AB001340]


[PN:Hypothetical protein] [OR:Escherichia coli] [SR:Escherichia


coli (strain:K12) DNA, clone:Kohara clone #245] [DB:genpept-bct1]


[DE:Escherichia coli genomic DNA. (26.8–27.1 min).] [NT:ORF_ID:o246#2;


similar to PIR Accession Number] [LE:11865] [RE:12965] [DI:complement]


>gp:[GI:g1787450] [LN:AE000218] [AC:AE000218:U00096] [PN:putative


dihydroxyacetone kinase (EC 2.7.1.2)] [GN:b1200] [FN:putative enzyme; Not


classified] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 108 of 400 of the complete genome.] [NT:f366; 35 pct


identical (32 gaps) to 355 residues] [LE:5171] [RE:6271] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_1367340_c1_424
647
4419
843
280
250
9.9e−31










Description


gp:[GI:e187587:g1420862] [LN:SPOPPDACA] [AC:X89237]


EPN:oligopeptidepermease] [GN:oppD] [OR:Streptococcus pyogenes]


[DB:genpept-bct1] [DE:S. pyogenes DNA for oppA, oppB, oppC, oppD, oppF, and


dacA genes.] [LE:5854] [RE:6924] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_13707008_f3_321
648
4420
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_1385962_c3_666
649
4421
984
327
1016
1.6e−102










Description


sp:[LN:BIOB_BACSU] [AC:P53557] [GN:BIOB] [OR:BACILLUS SUBTILIS] [EC:2.8.1.6]


[DE:BIOTIN SYNTHASE, (BIOTIN SYNTHETASE)] [SP:P53557] [DB:swissprot]


>pir:[LN:D69594] [AC:D69594] [PN:biotin synthetase bioB] [GN:bioB]


[CL:biotin synthetase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1277029]


[LN:BSU51868] [AC:U51868] [PN:biotin synthase] [GN:bioB] [FN:biotin pathway]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis biotin


biosynthetic operon genes, complete and partial cds.] [LE:6088] [RE:7095]


[DI:direct] >gp:[GI:e1185893:g2635504] [LN:BSUB0016] [AC:Z99119:AL009126]


[PN:biotin synthetase] [GN:bioB] [FN:biotin biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.8.1.—] [DE:Bacillus subtilis complete


genome (section 16 of 21) from 2997771 to 3213410.] [SP:P53557] [LE:91793]


[RE:92800] [DI:complement] >gp:[GI:g2293187] [LN:AF008220] [AC:AF008220]


[PN:biotin synthase] [GN:bioB] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [LE:87627] [RE:88634]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_14492327_c1_486
650
4422
429
142
495
2.6e−47










Description


sp:[LN:FOSB_STAEP] [AC:Q03377] [GN:FOSB] [OR:STAPHYLOCOCCUS EPIDERMIDIS]


[DE:FOSFOMYCIN RESISTANCE PROTEIN] [SP:Q03377] [DB:swissprot]


>pir:[LN:B48175] [AC:B48175] [PN:fosfomycin resistance protein B]


[CL:fosfomycin resistance protein] [OR:Staphylococcus epidermidis] [DB:pir2]


>gp:[GI:g46982] [LN:SEFOSB] [AC:X54227] [GN:fosB] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:S. epidermidis plasmid pIP1842 fosB gene


for FOSB.] [SP:Q03377] [LE:714] [RE:1133] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_14510962_c1_446
651
4423
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_14895212_c3_639
652
4424
822
273
980
1.1e−98










Description


gp:[GI:g3800821] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative ATPase domain] [GN:opp-1D] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus oligopeptide transporter


putative substrate binding domain (opp-1A), oligopeptide transporter putative


membrane permease domain (opp-1B), oligopeptide transporter putative membrane


permease domain (opp-1C), oligopeptide transporter putative ATPase domain


(opp-1D), and oligopeptide transporter putative ATPase domain (opp-1F) genes,


complete cds; and unknown gene.] [LE:3335] [RE:4150] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_157625_c1_428
653
4425
930
309
111
0.00054










Description


gp:[GI:e1407888:g4493994] [LN:PFMAL3P7] [AC:AL034559] [GN:MAL3P7.44]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P7, complete sequence.]


[NT:predicted using hexExon; MAL3P7.44 (PFC1065w),] [LE:188885] [RE:191470]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_162550_c3_650
654
4426
198
65
49
0.035










Description


sp:[LN:YPMB_BACSU] [AC:P54396] [GN:YPMB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 17.9 KD PROTEIN IN DING-ASPB INTERGENIC REGION] [SP:P54396]


[DB:swissprot] >pir:[LN:F69938] [AC:F69938] [PN:hypothetical protein ypmB]


[GN:ypmB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1146245] [LN:BACYPIA]


[AC:L47709] [GN:ypmB] [FN:hypothetical] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis (clone YAC15-6B) ypiABF genes,


qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene, ypmB


gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene,


complete cds's.] [NT:putative] [LE:18616] [RE:19101] [DI:direct]


>gp:[GI:e1183683:g2634656] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypmB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [SP:P54396]


[LE:152566] [RE:153051] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_162578_c1_425
655
4427
984
327
338
1.1e−30










Description


pir:[LN:A69867] [AC:A69867] [PN:conserved hypothetical protein ykuT]


[GN:ykuT] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181925:g2632241]


[LN:BS16829KB] [AC:AJ222587] [PN:YkuT protein] [GN:ykuT] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 29 kB DNA fragment from


ykwC gene to cse15 gene.] [LE:25580] [RE:26383] [DI:complement]


>gp:[GI:e1185011:g2633792] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykuT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to


hypothetical proteins] [LE:95836] [RE:96639] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_16486075_f2_138
656
4428
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_165902_c3_674
657
4429
627
208
185
1.8e−14










Description


sp:[LN:LP14_BACSU] [AC:P39144] [GN:LPA-14] [OR:BACILLUS SUBTILIS]


[DE:LIPOPEPTIDE ANTIBIOTICS ITURIN A AND SURFACTIN BIOSYNTHESIS PROTEIN]


[SP:P39144] [DB:swissprot] >pir:[LN:I39875] [AC:I39875] [PN:siderophore


biosynthesis regulatory protein sfp:lipopeptide antibiotics iturin


A:surfactin production protein] [GN:lpa-14:sfb:sfp:sfp(0)] [CL:siderophore


biosynthesis regulatory protein sfp] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005421:g473916] [LN:BACLPA14] [AC:D21876] [PN:lipopeptide


antibiotics iturin A] [GN:lpa-14] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:RB14) DNA] [DB:genpept-bct1] [DE:B. subtilis lpa-14 gene


encoding lipopeptide antibiotics iturin A.] [LE:1] [RE:675] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_187561_c1_470
658
4430
879
292










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_194010_c3_607
659
4431
1512
503
1381
3.4e−141










Description


gp:[GI:d1039113:g4514332] [LN:AB013369] [AC:AB013369] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 yesT and comEC genes, partial and complete


cds.] [NT:unknown] [LE:4328] [RE:5830] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_19688401_c2_516
660
4432
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_19773387_f3_363
661
4433
1248
415
746
6.6e−74










Description


sp:[LN:STPA_STAAU] [AC:P81297] [OR:STAPHYLOCOCCUS AUREUS] [EC:3.4.22.—]


[DE:STAPHOPAIN,] [SP:P81297] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_20585963_f3_396
662
4434
897
298
657
1.8e−64










Description


gp:[GI:g929972] [LN:BAU30714] [AC:U30714] [OR:Bacillus anthracis]


[SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis Weybridge A toxin


plasmid pXO1 right inverted repeat element (WeyAR) bordering the


toxin-encoding region, ORFA and ORFB genes, complete cds.] [NT:ORFB; similar


to B. anthracis SterneL element ORFB;] [LE:512] [RE:1336] [DI:direct]


>gp:[GI:g929975] [LN:BAU30715] [AC:U30715] [OR:Bacillus anthracis]


[SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis Sterne toxin


plasmid pXO1 left inverted repeat element (SterneL) bordering the


toxin-encoding region, ORFB and truncated ORFA genes, complete cds.]


[NT:ORFB; similar to B. anthracis WeyAR element ORFB;] [LE:458] [RE:1282]


[DI:direct] >gp:[GI:g4894312] [LN:AF065404] [AC:AF065404] [PN:pXO1-96]


[OR:Bacillus anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence


plasmid PXO1, complete sequence.] [LE:116307] [RE:117131] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_20704012_f1_106
663
4435
240
79










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_20979688_c2_511
664
4436
786
261
369
5.9e−34










Description


sp:[LN:NIKC_ECOLI] [AC:P33592] [GN:NIKC] [OR:ESCHERICHIA COLI] [DE:NICKEL


TRANSPORT SYSTEM PERMEASE PROTEIN NIKC] [SP:P33592] [DB:swissprot]


>pir:[LN:S39596] [AC:S39596:S47697:A65145] [PN:nikC protein] [GN:nikC]


[CL:oligopeptide permease protein oppB] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:g581141] [LN:ECNIK] [AC:X73143] [PN:NikC] [GN:nikC] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:E. coli DNA sequence of nik locus.] [SP:P33592]


[LE:2942] [RE:3775] [DI:direct] >gp:[GI:g912461] [LN:ECOUW76] [AC:U00039]


[GN:nikC] [OR:Escherichia coli] [SR:Escherichia coli (sub_strain MG1655,


strain K-12) (library:lambda] [DB:genpept-bct1] [DE:E. coli chromosomal


region from 76.0 to 81.5 minutes.] [LE:30444] [RE:31277] [DI:direct]


>gp:[GI:g1789889] [LN:AE000423] [AC:AE000423:U00096] [PN:transport of


nickel, membrane protein] [GN:nikC] [FN:transport; Transport of small


molecules:] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 313 of 400 of the complete genome.] [NT:o277] [LE:7496]


[RE:8329] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_212827_f3_295
665
4437
1482
493
429
2.6e−40










Description


pir:[LN:G70006] [AC:G70006] [PN:multidrug resistance protein homolog yubD]


[GN:yubD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185986:g2635597]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:yubD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21):from 2997771 to 3213410.] [NT:similar to multidrug resistance


protein] [LE:193143] [RE:194678] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_21588287_f2_271
666
4438
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_21907016_f1_123
667
4439
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22042337_c2_588
668
4440
1434
477
981
8.3e−99










Description


pir:[LN:F69763] [AC:F69763] [PN:multidrug resistance protein homolog ycnB]


[GN:ycnB] [CL:lincomycin-resistance protein lmrB] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182351:g2632685] [LN:BSUB0003] [AC:Z99106:AL009126]


[GN:ycnB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 3 of 21):from 402751 to 611850.]


[NT:similar to multidrug resistance protein] [LE:32866] [RE:34284]


[DI:complement] >gp:[GI:d1009651:g1805454] [LN:D50453] [AC:D50453]


[PN:homologue of multidrug resistance protein B,] [GN:ycnB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:115269] [RE:116687] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_222323413_c2_518
669
4441
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22464127_f2_191
670
4442
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22537818_c2_513
671
4443
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22664140_f3_335
672
4444
1395
464
191
1.0e−11










Description


pir:[LN:F69280] [AC:F69280] [PN:iron (II) transporter (feoB-1) homolog]


[CL:ferrous iron transport protein B:translation elongation factor Tu


homology] [OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2650395]


[LN:AE001089] [AC:AE001089:AE000782] [PN:iron (II) transporter (feoB-1)]


[GN:AF0246] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus


fulgidus section 18 of 172 of the complete genome.] [NT:similar to GB:L77117


SP:Q57986 PID:1591272 percent] [LE:10039] [RE:11958] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22664550_c2_512
673
4445
663
220
275
5.4e−24










Description


pir:[LN:C65145] [AC:C65145:S39598:S47699] [PN:nikE protein] [GN:nikE]


[CL:unassigned ATP-binding cassette proteins:ATP-binding cassette homology]


[OR:Escherichia coli] [DB:pir2] >gp:[GI:g466616] [LN:ECOUW76] [AC:U00039]


[GN:nikE] [OR:Escherichia coli] [SR:Escherichia coli (sub_strain MG1655,


strain K-12) (library:lambda] [DB:genpept-bct1] [DE:E. coli chromosomal


region from 76.0 to 81.5 minutes.] [LE:32038] [RE:32844] [DI:direct]


>gp:[GI:g1789891] [LN:AE000423] [AC:AE000423:U00096] [PN:ATP-binding protein


of nickel transport system] [GN:nikE] [FN:transport; Transport of small


molecules:] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 313 of 400 of the complete genome.] [NT:o268] [LE:9090]


[RE:9896] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_22853432_c1_448
674
4446
384
127
152
2.4e−10










Description


sp:[LN:INVO_PIG] [AC:P18175] [GN:IVL] [OR:SUS SCROFA] [SR:,PIG]


[DE:INVOLUCRIN] [SP:P18175] [DB:swissprot] >pir:[LN:I46592] [AC:I46592]


[PN:involucrin] [CL:involucrin] [OR:Sus scrofa domestica] [SR:, domestic


pig] [DB:pir2] >gp:[GI:g164523] [LN:PIGINVOLA] [AC:M34441] [OR:Sus scrofa]


[SR:Pig (Yorkshire) adult skin keratinocyte DNA] [DB:genpept-mam] [DE:Pig


involucrin gene, complete cds.] [NT:involucrin] [LE:1] [RE:1044] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_23444425_c1_426
675
4447
846
281
362
3.2e−33










Description


pir:[LN:B69834] [AC:B69834] [PN:conserved hypothetical protein yhjK]


[GN:yhjK] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183056:g2633390]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhjK] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21):from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:127427] [RE:128287] [DI:complement] >gp:[GI:e324984:g2226183]


[LN:BSY14081] [AC:Y14081] [PN:hypothetical protein] [GN:yhjK] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 92


degrees:region between comK and addAB.] [NT:Similarity to a large family of


hypothetical] [LE:9722] [RE:10582] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_23470290_c2_554
676
4448
915
304
1205
1.5e−122










Description


gp:[GI:g3800820] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative membrane] [GN:opp-1C] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:2469] [RE:3338] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_235837_c1_471
677
4449
1425
474










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_23601510_c1_488
678
4450
1137
378
911
2.2e−91










Description


sp:[LN:GLDA_BACST] [AC:P32816] [GN:GLDA:GLD] [OR:BACILLUS


STEAROTHERMOPHILUS] [EC:1.1.1.6] [DE:GLYCEROL DEHYDROGENASE, (GLDH)]


[SP:P32816] [DB:swissprot] >pir:[LN:JQ1474] [AC:JQ1474:S38514] [PN:glycerol


dehydrogenase,] [GN:gldA] [CL:glycerol dehydrogenase:lactaldehyde reductase


homology] [OR:Bacillus stearothermophilus] [EC:1.1.1.6] [DB:pir2]


>gp:[GI:g142978] [LN:BACGLDA] [AC:M65289] [PN:glycerol dehydrogenase]


[GN:gld] [OR:Bacillus stearothermophilus] [SR:Bacillus stearothermophilus


(sub_species nondiastaticus) (library] [DB:genpept-bct1] [EC:1.1.1.6]


[DE:Bacillus stearothermophilus glycerol dehydrogenase (proposed gld) gene,


complete cds.] [LE:742] [RE:1854] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_23652218_c1_459
679
4451
168
55
83
0.0012










Description


sp:[LN:GGI3_STAHA] [AC:P11699] [OR:STAPHYLOCOCCUS HAEMOLYTICUS]


[DE:ANTIBACTERIAL PROTEIN 3 (GONOCOCCAL GROWTH INHIBITOR 3)] [SP:P11699]


[DB:swissprot] >pir:[LN:BXSA3] [AC:S00601] [PN:antibacterial protein


3:gonococcal growth inhibitor 3] [CL:Staphylococcus haemolyticus


antibacterial protein] [OR:Staphylococcus haemolyticus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_23860307_c3_641
680
4452
1218
405
1603
1.0e−164










Description


gp:[GI:g3800823] [LN:AF076683] [AC:AF076683] [PN:unknown] [OR:Staphylococcus


aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus oligopeptide transporter


putative substrate binding domain (opp-1A), oligopeptide transporter putative


membrane permease domain (opp-1B), oligopeptide transporter putative membrane


permease domain (opp-1C), oligopeptide transporter putative ATPase domain


(opp-1D), and oligopeptide transporter putative ATPase domain (opp-1F) genes,


complete cds; and unknown gene.] [NT:orfX] [LE:4904] [RE:6097] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24000275_f3_303
681
4453
1026
341
1033
2.5e−104










Description


sp:[LN:OTCC_HAEIN] [AC:P44770] [GN:ARCB:HI0596] [OR:HAEMOPHILUS INFLUENZAE]


[EC:2.1.3.3] [DE:ORNITHINE CARBAMOYLTRANSFERASE, CATABOLIC, (OTCASE)]


[SP:P44770] [DB:swissprot] >pir:[LN:H64079] [AC:H64079] [PN:ornithine


carbamoyltransferase,] [CL:ornithine carbamoyltransferase:


aspartate/ornithine carbamoyltransferase homology] [OR:Haemophilus


influenzae] [EC:2.1.3.3] [DB:pir2] >gp:[GI:g1573585] [LN:U32741]


[AC:U32741:L42023] [PN:ornithine carbamoyltransferase (arcB)] [GN:HI0596]


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 56 of 163 of the complete genome.] [NT:similar to GB:X05637


SP:P08308 PID:45288 percent] [LE:3467] [RE:4471] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24095387_c1_438
682
4454
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24105393_c2_562
683
4455
768
255
711
3.4e−70










Description


gp:[GI:e1456529:g4914622] [LN:LMAJ9627] [AC:AJ009627] [PN:pyruvate-formate


lyase activating enzyme] [GN:pflC] [OR:Listeria monocytogenes]


[DB:genpept-bct1] [DE:Listeria monocytogenes pflC, orfA, lltB and orfC


genes.] [NT:putative; similar to Streptococcus mutans PflC] [LE:149]


[RE:895] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24225375_c2_533
684
4456
213
70
97
3.9e−05










Description


gp:[GI:g3212079] [LN:AF068633] [AC:AF068633] [PN:phenol soluble modulin beta


1] [FN:inflammatory protein] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis phenol soluble modulin beta


1 and phenolsoluble modulin beta 2 genes, complete cds.] [NT:PSM beta 1]


[LE:669] [RE:803] [DI:direct] >gp:[GI:g3212080] [LN:AF068633] [AC:AF068633]


[PN:phenol soluble modulin beta 2] [FN:inflammatory protein]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis phenol soluble modulin beta 1 and phenolsoluble modulin beta 2


genes, complete cds.] [NT:PSM beta 2] [LE:859] [RE:993] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24257881_f1_68
685
4457
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24266041_f1_22
686
4458
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24391678_f1_120
687
4459
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24407677_f3_293
688
4460
234
77










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24650300_c1_476
689
4461
1365
454
1037
9.6e−105










Description


sp:[LN:BRNQ_LACDL] [AC:P54104] [GN:BRNQ] [OR:LACTOBACILLUS DELBRUECKII]


[SR:,SUBSPLACTIS] [DE:CHAIN AMINO ACID UPTAKE CARRIER)] [SP:P54104]


[DB:swissprot] >pir:[LN:S60180] [AC:S60180 ] [PN:branched-chain amino acid


carrier brnQ] [GN:brnQ] [CL:branched-chain amino acid transport system II


carrier protein braZ] [OR:Lactobacillus delbrueckii] [DB:pir2]


>gp:[GI:g732813] [LN:LDBRNQGN] [AC:Z48676] [PN:branched-chain amino acid


carrier] [GN:brnQ] [FN:transport of branched-chain amino acids (Leu,]


[OR:Lactobacillus delbrueckii] [DB:genpept-bct1] [DE:L. delbrueckii brnQ gene


for branched-chain amino acid carrier.] [SP:P54104] [LE:611] [RE:1951]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24664012_f2_199
690
4462
453
150
82
0.0052










Description


gp:[GI:d1025730:g2879910] [LN:D85752] [AC:D85752] [GN:bacD] [OR:Enterococcus


faecalis] [SR:Enterococcus faecalis plasmid:pPD1 DNA] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pPD1 bacA, bacB, bacC, bacD, bacE, bacF,


bacG, bacH and bacI genes, complete cds.] [LE:3977] [RE:4324] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24711588_c2_589
691
4463
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24884688_c2_509
692
4464
528
175
216
5.6e−17










Description


gp:[GI:g3800818] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative substrate] [GN:opp-1A] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:64] [RE:1524] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_24886552_c3_635
693
4465
792
263
603
9.4e−59










Description


gp:[GI:d1037145:g4062842] [LN:AB009078] [AC:AB009078] [PN:L-2.3-butanediol


dehydrogenase] [OR:Brevibacterium saccharolyticum] [SR:Brevibacterium


saccharolyticum DNA] [DB:genpept-bct1] [DE:Brevibacterium saccharolyticum


gene for L-2.3-butanedioldehydrogenase, complete cds.] [LE:1743] [RE:2519]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_25429665_c1_496
694
4466
1338
445
267
4.3e−21










Description


pir:[LN:S58131] [AC:S58131] [PN:integral membrane protein LmrP]


[OR:Lactococcus lactis] [DB:pir2] >gp:[GI:g1052754] [LN:LLLMRP] [AC:X89779]


[PN:LmrP integral membrane protein] [GN:lmrP] [OR:Lactococcus lactis]


[DB:genpept-bct1] [DE:L. lactis DNA for LmrP gene.] [LE:634] [RE:1860]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_25476378_f1_13
695
4467
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_25894687_c3_624
696
4468
243
80










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26182681_c3_595
697
4469
528
175










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26208450_f1_24
698
4470
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26229678_f1_27
699
4471
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26265641_c2_543
700
4472
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26367135_c1_508
701
4473
2079
692
1496
2.2e−153










Description


sp:[LN:LIP_STAEP] [AC:Q02510] [GN:GEHC] [OR:STAPHYLOCOCCUS EPIDERMIDIS]


[EC:3.1.1.3] [DE:LIPASE PRECURSOR, (GLYCEROL ESTER HYDROLASE)] [SP:Q02510]


[DB:swissprot] >pir:[LN:A47705] [AC:A47705] [PN:triacylglycerol lipase,]


[CL:Staphylococcus triacyiglycerol lipase] [OR:Staphylococcus epidermidis]


[EC:3.1.1.3] [DB:pir2] >gp:[GI:g153022] [LN:STAGEHC] [AC:M95577] [PN:lipase]


[GN:gehC] [OR:Staphylococcus epidermidis] [SR:Staphylococcus epidermidis


(strain 9) DNA] [DB:genpept-bct1] [DE:Staphylococcus epidermidis lipase


(gehC) gene, complete cds.] [NT:GTG start codon] [LE:121] [RE:2187]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26369027_f2_260
702
4474
984
327
1350
6.5e−138










Description


pir:[LN:E69806] [AC:E69806] [PN:conserved hypothetical protein yfjN]


[GN:yfjN] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182793:g2633127]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfjN] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21):from 802821 to 1011250.] [NT:similar to hypothetical proteins]


[LE:73112] [RE:74089] [DI:direct] >gp:[GI:d1025211:g2780398] [LN:D78509]


[AC:D78509] [PN:YfjN] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis YfjG-YfjR genes,


complete cds.] [LE:12236] [RE:13213] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_2660936_f2_253
703
4475
513
170
373
2.2e−34










Description


sp:[LN:Y318_HAEIN] [AC:P43984] [GN:HI0318] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI0318] [SP:P43984] [DB:swissprot] >pir:[LN:B64006]


[AC:B64006] [PN:hypothetical protein HI0318] [OR:Haemophilus influenzae]


[DB:pir2] >gp:[GI:g1573288] [LN:U32717] [AC:U32717:L42023] [PN:conserved


hypothetical protein] [GN:HI0318] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 32 of 163 of the


complete genome.] [NT:similar to SP:P54158 PID:1256620 GB:AL009126]


[LE:4064] [RE:4582] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26759430_c3_654
704
4476
978
325
872
2.9e−87










Description


pir:[LN:E69670] [AC:E69670] [PN:glycine betaine/carnitine/choline ABC


transporter (osmoprotec) opuCC] [GN:opuCC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186069:g2635894] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine


betaine/carnitine/choline ABC] [GN:opuCC] [FN:high affinity transport of


glycine betaine,] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 18 of 21):from 3399551 to 3609060.]


[NT:alternate gene name:yvbC] [LE:67766] [RE:68677] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26760076_f3_305
705
4477
1578
525
1550
4.2e−159










Description


sp:[LN:YFCC_HAEIN] [AC:P44023] [GN:HI0594] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI0594] [SP:P44023] [DB:swissprot] >pir:[LN:E64010]


[AC:E64010] [PN:hypothetical protein HI0594] [CL:Haemophilus influenzae


conserved hypothetical protein HI0594] [OR:Haemophilus influenzae] [DB:pir2]


>gp:[GI:g1573583] [LN:U32741] [AC:U32741:L42023] [PN:conserved hypothetical


transmembrane protein] [GN:HI0594] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 56 of 163 of the


complete genome.] [NT:similar to GB:AE000783 percent identity:35.02;]


[LE:891] [RE:2420] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_26774137_c2_574
706
4478
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_272593_c3_636
707
4479
879
292
82
0.0082










Description


sp:[LN:YORB_LISMO] [AC:P33382] [OR:LISTERIA MONOCYTOGENES] [DE:HYPOTHETICAL


12.0 KD PROTEIN IN PLCB-LDH INTERGENIC REGION (ORFB)] [SP:P33382]


[DB:swissprot] >pir:[LN:143868] [AC:143868] [PN:ORFB] [CL:hypothetical


protein MJ1413] [OR:Listeria monocytogenes] [DB:pir2] >gp:[GI:g149648]


[LN:LISACTLDH] [AC:M82881] [OR:Listeria monocytogenes] [SR:Listeria


monocytogenes (strain L028) DNA] [DB:genpept-bct1] [DE:Listeria


monocytogenes lecithinase, lactate dehydrogenase (actA) gene complete cds,


(plcB) gene complete cds, (ldh) gene complete cds.] [NT:ORFB] [LE:4094]


[RE:4426] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_2906307_f1_60
708
4480
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_2928437_c1_477
709
4481
921
306
375
1.4e−34










Description


pir:[LN:A69401] [AC:A69401] [PN:conserved hypothetical protein AF1210]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649377] [LN:AE001021]


[AC:AE001021:AE000782] [PN:conserved hypothetical protein] [GN:AF1210]


[OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus fulgidus


section 86 of 172 of the complete genome.] [NT:similar to GP:1654020 percent


identity:34.56;] [LE:12088] [RE:13029] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_2929718_c1_463
710
4482
1959
652
3345
0.0










Description


gp:[GI:g3789932] [LN:AF090142] [AC:AF090142] [PN:lipase precursor] [GN:gehD]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [EC:3.1.1.3]


[DE:Staphylococcus epidermidis lipase precursor (gehD) gene, complete cds.]


[NT:GehD] [LE:293] [RE:2224] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_29398437_f2_132
711
4483
234
77










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3003137_f2_215
712
4484
906
301
294
5.2e−26










Description


pir:[LN:H70313] [AC:H70313] [PN:cobalamin synthesis related protein CobW]


[GN:cobW] [OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2982874] [LN:AE000675]


[AC:AE000675:AE000657] [PN:cobalamin synthesis related protein CobW]


[GN:cobW] [OR:Aquifex aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus


section 7 of 109 of the complete genome.] [LE:11287] [RE:12165] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30103592_c3_600
713
4485
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30251551_f3_412
714
4486
159
52
73
0.027










Description


sp:[LN:YO21_BPHP1] [AC:P51723] [OR:BACTERIOPHAGE HP1] [DE:HYPOTHETICAL 19.2


KD PROTEIN IN REP-HOL INTERGENIC REGION (ORF21)] [SP:P51723] [DB:swissprot]


>pir:[LN:S69527] [AC:S69527] [PN:hypothetical protein 21] [OR:phage HP1]


[DB:pir2] >gp:[GI:g1046248] [LN:BHU24159]


[AC:U24159:U06847:M28366:M12911:M22941:M12910:M15313] [OR:Bacteriophage HP1]


[DB:genpept-phg] [DE:Bacteriophage HP1 strain HP1c1, complete genome.]


[NT:orf21] [LE:17028] [RE:17528] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30271882_c3_618
715
4487
720
239
268
3.0e−23










Description


gp:[GI:g490316] [LN:A02585] [AC:A02585] [GN:bioD] [OR:synthetic construct]


[DB:genpept-pat] [DE:Synthetic (LORF1) bioD gene.] [LE:39] [RE:764]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30272531_f2_228
716
4488
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30351677_c3_598
717
4489
804
267










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_30742307_c2_572
718
4490
669
222
640
1.1e−62










Description


pir:[LN:F69670] [AC:F69670] [PN:glycine betaine/carnitine/choline ABC


transporter (membrane p) opuCD] [GN:opuCD] [CL:glycine


betaine/carnitine/choline ABC transporter] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g2271392] [LN:AF009352] [AC:AF009352] [PN:transmembrane protein]


[GN:opuCD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


osmoprotectant transport system OpuC including ATPase (opuCA), transmembrane


protein (opuCB), osmoprotectant binding protein precursor (opuCC) and


transmembrane protein (opuCD) genes, complete cds.] [NT:OpuCD; part of the


osmoprotectant transport system] [LE:3627] [RE:4316] [DI:direct]


>gp:[GI:e1186068:g2635893] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine


betaine/carnitine/choline ABC] [GN:opuCD] [FN:high affinity transport of


glycine betaine,] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 18 of 21):from 3399551 to 3609060.]


[NT:alternate gene name:yvbB] [LE:67059] [RE:67748] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3125687_f1_114
719
4491
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_31287513_c1_464
720
4492
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3163552_c3_597
721
4493
963
320
356
1.4e−32










Description


gp:[GI:g3800819] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative membrane] [GN:opp-1B] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:1537] [RE:2472] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3174187_f2_222
722
4494
330
109










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_32609682_f3_403
723
4495
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_32615677_c2_544
724
4496
1035
344
510
6.7e−49










Description


pir:[LN:A69756] [AC:A69756] [PN:adhesion protein homolog ycdH] [GN:ycdH]


[CL:adhesin B] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1023108:g2415736]


[LN:AB000617] [AC:AB000617] [PN:YcdH] [GN:ycdH] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA, 22 to 25 degree region, complete cds.] [NT:homologue of


adhesion protein precursor of] [LE:21421] [RE:22380] [DI:direct]


>gp:[GI:e1182237:g2632571] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycdH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21):from 194651 to 415810.] [NT:similar to


adhesion protein] [LE:113236] [RE:114195] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_32755_f2_185
725
4497
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_33241562_f2_147
726
4498
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_33479716_c3_634
727
4499
1401
466
421
1.8e−39










Description


gp:[GI:e1429016:g4753872] [LN:SCH10] [AC:AL049754] [PN:putative


transmembrane efflux protein] [GN:SCH10.26c] [OR:Streptomyces coelicolor]


[DB:genpept-bct1] [DE:Streptomyces coelicolor cosmid H10.] [NT:SCH10.26c,


probable transmembrane efflux protein,] [LE:22729] [RE:24183]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34171927_c1_468
728
4500
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34277062_c3_602
729
4501
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34408552_f1_21
730
4502
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34429837_f1_39
731
4503
948
315
769
2.4e−76










Description


sp:[LN:ARCL_ECOLI] [AC:Q46807] [GN:YQEA] [OR:ESCHERICHIA COLI] [DE:CARBAMATE


KINASE-LIKE PROTEIN 1] [SP:Q46807] [DB:swissprot] >pir:[LN:B65071]


[AC:B65071] [PN:hypothetical protein b2874] [CL:carbamate kinase]


[OR:Escherichia coli] [DB:pir2] >gp:[GI:g887824] [LN:ECU28375] [AC:U28375]


[OR:Escherichia coli] [DB:genpept-bct1] [DE:Escherichia coli K-12 genome;


approximately 64 to 65 minutes.] [NT:ORF_o310] [LE:21276] [RE:22208]


[DI:direct] >gp:[GI:g1789238] [LN:AE000370] [AC:AE000370:U00096]


[PN:putative kinase] [GN:yqeA] [FN:putative enzyme; Not classified]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 260 of 400 of the complete genome.] [NT:o310; This 310 aa ORF is 45


pct identical (21 gaps)] [LE:11360] [RE:12292] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34631527_f1_109
732
4504
336
111
374
1.7e−34










Description


gp:[GI:d1045996:g5360820] [LN:D86934] [AC:D86934] [PN:transposase]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N026; putative] [LE:19527]


[RE:19751] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34642135_c3_663
733
4505
246
81
79
0.020










Description


gp:[GI:g488889] [LN:A12521] [AC:A12521] [PN:Acidic Basic Repeat Antigen


Rhoptry (ABRA)] [OR:Plasmodium falciparum] [SR:malaria parasite P.


falciparum] [DB:genpept-pat] [DE:Ag189 clone.] [LE:1:61] [RE:45:963]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_34657677_c3_615
734
4506
2994
997
2435
6.9e−253










Description


gp:[GI:g4185565] [LN:AF115379] [AC:AF115379] [PN:surface protein Pls]


[GN:pls] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus surface protein Pls (pls) gene, complete cds.] [NT:methicillin


resistant; contains a DS repeat area] [LE:1] [RE:4914] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_35312766_f2_151
735
4507
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_35331905_c3_612
736
4508
318
105
81
0.012










Description


gp:[GI:g5052610] [LN:AF145660] [AC:AF145660] [PN:BcDNA.GH10614]


[GN:BcDNA.GH10614] [OR:Drosophila melanogaster] [SR:fruit fly]


[DB:genpept-inv2] [DE:Drosophila melanogaster clone GH10614 BcDNA.GH10614


(BcDNA.GH10614) mRNA, complete cds.] [LE:14] [RE:964] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_36042152_c3_616
737
4509
3246
1081
2306
1.8e−251










Description


gp:[GI:g4185565] [LN:AF115379] [AC:AF115379] [PN:surface protein Pls]


[GN:pls] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus surface protein Pls (pls) gene, complete cds.] [NT:methicillin


resistant; contains a DS repeat area] [LE:1] [RE:4914] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_31613752_f1_90
738
4510
1128
375
172
1.7e−10










Description


sp:[LN:YPDA_BACSU] [AC:P50736] [GN:YPDA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 36.3 KD PROTEIN IN RECQ-CMK INTERGENIC REGION] [SP:P50736]


[DB:swissprot] >pir:[LN:A69934] [AC:A69934] [PN:thioredoxin reductase


homolog ypdA] [GN:ypdA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183740:g2634713] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypdA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [NT:similar to


thioredoxin reductase] [SP:P50736] [LE:204681] [RE:205655] [DI:complement]


>gp:[GI:e1185564:g2634730] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:ypdA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


thioredoxin reductase] [SP:P50736] [LE:4961] [RE:5935] [DI:complement]


>gp:[GI:g1146207] [LN:BACSERA] [AC:L47648] [GN:ypdA] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis phosphoglycerate dehydrogenase


(serA), ypaA, ferredoxin (fer), ypbB, recS, ypbD, ypbE, ypbF, ypbG,


ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB, ypdC, spore cortexlytic


enzyme (sleB), ypeB, ypfA, ypfB, cytidine monophosphatekinase (cmk), ypfD,


ypgA, yphA, yphB, yphC, NAD+ dependent glycerol-3-phosphate dehydrogenase


(glyc), yphE and yphF genes, complete cds.] [NT:putative] [LE:10742]


[RE:11716] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_36601703_c1_467
739
4511
939
312
406
7.0e−38










Description


sp:[LN:APBE_TREPA] [AC:O83774] [GN:APBE:TP0796] [OR:TREPONEMA PALLIDUM]


[DE:THIAMINE BIOSYNTHESIS LIPOPROTEIN APBE PRECURSOR] [SP:O83774]


[DB:swissprot] >pir:[LN:C71281] [AC:C71281] [PN:conserved hypothetical


protein TP0796] [GN:TP0796] [CL:hypothetical protein HI0172] [OR:Treponema


pallidum subsp. pallidum] [SR:, syphilis spirochete] [DB:pir2]


>gp:[GI:g3323101] [LN:AE001250] [AC:AE001250:AE000520] [PN:conserved


hypothetical protein] [GN:TP0796] [OR:Treponema pallidum] [DB:genpept-bct2]


[DE:Treponema pallidum section 66 of 87 of the complete genome.] [NT:similar


to GB:L42023 SP:P44550 PID:1003244] [LE:10082] [RE:11170] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3939215_f2_247
740
4512
984
327
377
8.3e−35










Description


gp:[GI:g2766193] [LN:SHU75349] [AC:U75349] [PN:periplasmic-iron-binding


protein BhiC] [GN:bhi operon] [OR:Brachyspira hyodysenteriae]


[DB:genpept-bct2] [DE:Serpulina hyodysenteriae bhi operon, complete


sequence.] [LE:1674] [RE:2693] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_3948408_c3_655
741
4513
777
248
315
3.1e−28










Description


sp:[LN:XYNC_CALSA] [AC:P23553] [GN:XYNC] [OR:CALDOCELLUM SACCHAROLYTICUM]


[SR:,CALDICELLULOSIRUPTOR SACCHAROLYTICUS] [EC:3.1.—.—] [DE:ACETYL ESTERASE,


(ACETYLXYLOSIDASE)] [SP:P23553] [DB:swissprot] >pir:[LN:B37202] [AC:B37202]


[PN:acetylesterase, (XynC)] [OR:Caldocellum saccharolyticum] [EC:3.1.1.6]


[DB:pir2] >gp:[GI:g144297] [LN:CDCXYNAB] [AC:M34459]


[OR:Caldicellulosiruptor saccharolyticus] [SR:C. saccharolyticum DNA, clone


pNZ1400] [DB:genpept-bct1] [DE:C. saccharolyticum xylanase A (XynA),


beta-xylosidase (XynB) andacetyl esterase (XynC) genes, complete cds.]


[NT:acetyl esterase (XynC)] [LE:1257] [RE:2057] [DI:direct]


>gp:[GI:g2645420] [LN:AF005383] [AC:AF005383] [PN:acetylxylosidase]


[GN:XynC] [OR:Caldicellulosiruptor saccharolyticus] [DB:genpept-bct2]


[DE:Caldicellulosiruptor saccharolyticus putative transport protein (XynG),


putative transport protein (XynH), xylanase (XynF), xylanase (XynE), xylanase


(XynD), xylanase (XynA), acetylxylosidase (XynC) and xylanase (XynB) genes,


complete cds.] [LE:13673] [RE:14473] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4062925_f2_246
742
4514
393
130
103
7.8e−07










Description


gp:[GI:g2072447] [LN:LLU93364] [AC:U93364] [PN:EpsJ] [GN:epsJ]


[OR:Lactococcus lactis subsp. cremoris] [DB:genpept-bct2] [DE:Lactococcus


lactis cremoris plasmid pNZ4000 insertion sequence IS982 putative transposase


gene and eps gene cluster (epsRXABCDEFGHIJKL), complete cds.] [LE:10209]


[RE:11399] [DI:direct] >gp:[GI:g2072447] [LN:AF036485]


[AC:AF036485:AF036486:AF036487:U93364] [PN:EpsJ] [GN:epsJ] [OR:Plasmid


pNZ4000] [DB:genpept] [DE:Plasmid pNZ4000, complete sequence.] [LE:16729]


[RE:17919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4072680_f1_75
743
4515
774
257
311
8.2e−28










Description


pir:[LN:A70039] [AC:A70039] [PN:ABC transporter (ATP-binding protein)


homolog yvfR] [GN:yvfR] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1186097:g2635922] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvfR] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:97865] [RE:98770] [DI:complement] >gp:[GI:e313073:g1945718]


[LN:BSZ94043] [AC:Z94043] [PN:hypothetical protein] [GN:yvfR] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).]


[NT:probable ABC transporter] [LE:82901] [RE:83806] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4079382_f3_313
744
4516
243
80










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4094052_f3_330
745
4517
219
72










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4098385_f1_115
746
4518
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4101063_f1_113
747
4519
396
131
88
0.022










Description


pir:[LN:T02638] [AC:T02638] [PN:G2 protein homolog] [GN:g2]


[OR:Dictyostelium discoideum] [DB:pir2] >gp:[GI:g3068587] [LN:AF000580]


[AC:AF000580] [PN:G2-like] [GN:g2] [OR:Dictyostelium discoideum]


[DB:genpept-inv1] [DE:Dictyostelium discoideum plasmid Ddp5, complete


genome.] [NT:similar to plasmid Ddp1. g2/g3/d4 protein; possible] [LE:11232]


[RE:12167] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4101640_c2_545
748
4520
3054
1017
680
1.9e−66










Description


sp:[LN:YQIG_BACSU] [AC:P54524] [GN:YQIG] [OR:BACILLUS SUBTILIS] [EC:1.—.—.—]


[DE:PROBABLE NADH-DEPENDENT FLAVIN OXIDOREDUCTASE YQIG,] [SP:P54524]


[DB:swissprot] >pir:[LN:C69961] [AC:C69961] [PN:NADH-dependent flavin


oxidoreductase homolog yqiG] [GN:yqiG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013261:g1303926] [LN:BACJH642] [AC:D84432:D82370] [PN:YqiG]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:202096] [RE:203214] [DI:complement]


>gp:[GI:e1185689:g2634855] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqiG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


NADH-dependent flavin oxidoreductase] [SP:P54524] [LE:120407] [RE:121525]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4705053_c2_536
749
4521
1221
406
454
5.8e−43










Description


sp:[LN:BIOF_HAEIN] [AC:P44422] [GN:BIOF:HI1553] [OR:HAEMOPHILUS INFLUENZAE]


[EC:2.3.1.47] [DE:LIGASE)] [SP:P44422] [DB:swissprot] >pir:[LN:D64129]


[AC:D64129] [PN:8-amino-7-oxononanoate synthase homolog]


[CL:5-aminolevulinate synthase] [OR:Haemophilus influenzae] [DB:pir2]


>gp:[GI:g1574397] [LN:U32830] [AC:U32830:L42023] [PN:8-amino-7-oxononanoate


synthase (bioF)] [GN:HI1553] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 145 of 163 of the


complete genome.] [NT:similar to SP:P53556 PID:1277027 PID:2293185] [LE:7529]


[RE:8671] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4722131_f2_268
750
4522
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4765_f2_245
751
4523
321
106
90
0.0025










Description


gp:[GI:g5306152] [LN:AF160864] [AC:AF160864] [PN:haem lyase] [GN:yejR]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:ATA initiation codon; ATG codon 128 nt downstream] [LE:18212] [RE:19750]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4773518_c3_664
752
4524
885
294
563
1.6e−54










Description


gp:[GI:e312302:g1944618] [LN:SEGAPLPP] [AC:Y12602] [PN:acid phosphatase]


[GN:lppC] [FN:cell membrane lipoprotein] [OR:Streptococcus equisimilis]


[DB:genpept-bct1] [DE:Streptococcus equisimilis gapC and lppC genes.]


[LE:1390] [RE:2247] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4782963_c1_460
753
4525
1365
454
1105
6.0e−112










Description


pir:[LN:B70316] [AC:B70316] [PN:DAPA aminotransferase] [GN:bioA]


[CL:beta-alanine--pyruvate transaminase] [OR:Aquifex aeolicus] [DB:pir2]


>gp:[GI:g2982887] [LN:AE000676] [AC:AE000676:AE000657] [PN:DAPA


aminotransferase] [GN:bioA] [OR:Aquifex aeolicus] [DB:genpept-bct2]


[DE:Aquifex aeolicus section 8 of 109 of the complete genome.] [LE:10739]


[RE:12100] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4797177_c2_566
754
4526
588
195
308
1.7e−27










Description


gp:[GI:d1011096:g1001205] [LN:SYCSLLE] [AC:D64003:AB001339] [PN:hypothetical


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 22/27,


2755703–2868766.] [NT:ORF_ID:slr0895] [LE:7468] [RE:8031] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4798202_c3_623
755
4527
816
271
103
0.023










Description


pir:[LN:B71605] [AC:B71605] [PN:hypothetical protein PFB0850c] [GN:PFB0850c]


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845292] [LN:AE001420]


[AC:AE001420:AE001362] [PN:hypothetical protein] [GN:PFB0850c]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 57 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:11963] [RE:14386]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4800077_f3_350
756
4528
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4859628_c3_603
757
4529
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4867842_c3_652
758
4530
978
325
486
2.3e−46










Description


pir:[LN:E69400] [AC:E69400] [PN:3-hydroxyacyl-CoA dehydrogenase (hbd-8)


homolog] [OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649379]


[LN:AE001021] [AC:AE001021:AE000782] [PN:3-hydroxyacyl-CoA dehydrogenase


(hbd-8)] [GN:AF1206] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2]


[DE:Archaeoglobus fulgidus section 86 of 172 of the complete genome.]


[NT:similar to PID:1055222 SP:P52041 percent identity:] [LE:9126] [RE:10073]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4884812_f3_314
759
4531
1257
418
579
1.1e−78










Description


gp:[GI:e1358508:g3980137] [LN:LMO34616] [AC:AJ007319]


[PN:succinyl-diaminopimelate desuccinylase] [GN:dapE] [OR:Listeria


monocytogenes] [DB:genpept-bct1] [DE:Listeria monocytogenes ascB, inlG,


inlH, inlE, dapE genes.] [LE:5533] [RE:6672] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4895061_c2_561
760
4532
2271
756
2671
6.8e−278










Description


pir:[LN:S01788] [AC:S01788:B32305:F64829] [PN:formate C-acetyltransferase,


1:pyruvate formate-lyase I] [GN:pflB:pfl] [CL:formate C-acetyltransferase


1:glycyl radical homology] [OR:Escherichia coli] [EC:2.3.1.54] [DB:pir1]


[MP:20.5] >gp:[GI:d1036624:g1651427] [LN:D90728] [AC:D90728:AB001340]


[PN:Formate c-acetyltransferase (EC 2.3.1.54).] [GN:pfl] [OR:Escherichia


coli] [SR:Escherichia coli (strain:K12) DNA, clone:Kohara clone #216]


[DB:genpept-bct1] [DE:Escherichia coli genomic DNA. (20.4–20.8 min).]


[NT:ORF_ID:o216#7; similar to PIR Accession Number] [LE:6965] [RE:9247]


[DI:complement] >gp:[GI:g42370] [LN:ECPFL] [AC:X08035] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:E. coli pfl gene for pyruvate formate-lyase (EC


2.3.1.54).] [NT:pyruvate formate-lyase (AA 1–760)] [SP:P09373] [LE:101]


[RE:2383] [DI:direct] >gp:[GI:g1787131] [LN:AE000192] [AC:AE000192:U00096]


[PN:formate acetyltransferase 1] [GN:pflB] [FN:enzyme; Energy metabolism,


carbon:Anaerobic] [OR:Escherichia coli] [DB:genpept-bct2] [EC:2.3.1.54]


[DE:Escherichia coli K-12 MG1655 section 82 of 400 of the complete genome.]


[NT:f760; 100 pct identical to PFLB_ECOLI SW:P09373] [LE:5588] [RE:7870]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_4974091_c2_569
761
4533
504
167
93
0.00087










Description


pir:[LN:B71359] [AC:B71359] [PN:conserved hypothetical protein TP0156]


[GN:TP0156] [OR:Treponema pallidum subsp. pallidum] [SR:, syphilis


spirochete] [DB:pir2] >gp:[GI:g3322423] [LN:AE001200] [AC:AE001200:AE000520]


[PN:conserved hypothetical protein] [GN:TP0156] [OR:Treponema pallidum]


[DB:genpept-bct2] [DE:Treponema pallidum section 16 of 87 of the complete


genome.] [NT:similar to GB:L42023 SP:P44679 PID:1003656] [LE:2984] [RE:3388]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_505301_f3_345
762
4534
291
96










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_5109785_c3_670
763
4535
255
84
76
0.010










Description


gp:[GI:g4103231] [LN:AF021085] [AC:AF021085] [PN:cytochrome b] [GN:cytb]


[OR:Mitochondrion Edaphus sp.] [SR:Edaphus sp] [DB:genpept-inv2] [DE:Edaphus


sp. cytochrome b (cytb) gene, mitochondrial gene encoding mitochondrial


protein, partial cds.] [LE:<1] [RE:>465] DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_5113413_c3_653
764
4536
642
213
579
3.3e−56










Description


pir:[LN:D69670] [AC:D69670] [PN:glycine betaine/carnitine/choline ABC


transporter (membrane p) opuCB] [GN:opuCB] [CL:glycine


betaine/carnitine/choline ABC transporter] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g2271390] [LN:AF009352] [AC:AF009352] [PN:transmembrane protein]


[GN:opuCB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


osmoprotectant transport system OpuC including ATPase (opuCA), transmembrane


protein (opuCB), osmoprotectant binding protein precursor (opuCC) and


transmembrane protein (opuCD) genes, complete cds.] [NT:OpuCB; part of the


osmoprotectant transport system] [LE:2025] [RE:2678] [DI:direct]


>gp:[GI:e1186070:g2635895] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine


betaine/carnitine/choline ABC] [GN:opuCB] [FN:high affinity transport of


glycine betaine,] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 18 of 21):from 3399551 to 3609060.]


[NT:alternate gene name:yvbD] [LE:68697] [RE:69350] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_5160925_c1_443
765
4537
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_5189037_c3_620
766
4538
711
236
351
4.7e−32










Description


pir:IILN:H64461] [AC:H64461] [PN:6-carboxyhexanoate--CoA ligase,]


[CL:6-carboxyhexanoate--CoA ligase bioW] [OR:Methanococcus jannaschii]


[EC:6.2.1.14] [DB:pir2] [MP:FOR1244632-1245345] >gp:[GI:g1591935]


[LN:U67570] [AC:U67570:L77117] [PN:6-carboxyhexanoate-CoA ligase (bioW)]


[GN:MJ1297] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 112 of 150 of the complete genome.]


[NT:similar to GB:M29291 SP:P22822 PID:142594 percent] [LE:6098] [RE:6811]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_5860630_c2_564
767
4539
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_6056567_c1_490
768
4540
579
192
320
9.1e−29










Description


pir:[LN:D64866] [AC:D64866] [PN:hypothetical protein b1199] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:g1787449] [LN:AE000218] [AC:AE000218:U00096]


[PN:putative dihydroxyacetone kinase (EC 2.7.1.2)] [GN:b1199] [FN:putative


enzyme; Not classified] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 108 of 400 of the complete genome.]


[NT:f210; 30 pct identical (16 gaps) to 181 residues] [LE:4528] [RE:5160]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_625262_c1_430
769
4541
228
75
54
0.013










Description


gp:[GI:g765037] [LN:DROMTTRND] [AC:M18022] [PN:NADH dehydrogenase subunit 2]


[OR:Mitochondrion Drosophila melanogaster] [SR:fruit fly] [DB:genpept-inv2]


[DE:D. melanogaster Trp-tRNA, Cys-tRNA, Tyr-tRNA, NADH dehydrogenase subunit 2


(3′ end) cytochrome oxidase subunit 1 (5′ end) genes.] [LE:<1] [RE:462]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_6302217_c3_638
770
4542
948
315
1335
2.5e−136










Description


gp:[GI:g3800819] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative membrane] [GN:opp-1B] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:1537] [RE:2472] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_6725817_c3_658
771
4543
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_7072825_c1_435
772
4544
774
257
459
1.7e−43










Description


gp:[GI:g4980796] [LN:AE001711] [AC:AE001711:AE000512] [PN:oxidoreductase,


short chain] [GN:TM0297] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 23 of 136 of the complete genome.]


[NT:similar to SP:P50167 PID:763164 percent identity:] [LE:7161] [RE:7934]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_800300_c1_458
773
4545
585
194
313
5.0e−28










Description


pir:[LN:S23693] [AC:S23693] [PN:erythrocyte membrane-associated antigen


(clone pPf K19)] [OR:Plasmodium falciparum] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_814140_c1_437
774
4546
1422
473
1168
1.3e−118










Description


sp:[LN:UHPT_ECOLI] [AC:P13408:P76727] [GN:UHPT] [OR:ESCHERICHIA COLI]


[DE:HEXOSE PHOSPHATE TRANSPORT PROTEIN] [SP:P13408:P76727] [DB:swissprot]


>pir:[LN:MMECHP] [AC:A30395:H41853:C65168:Q00500:S30079] [PN:hexose


phosphate transport protein uhpT] [GN:uhpT] [CL:hexose phosphate transport


protein uhpT] [OR:Escherichia coli] [DB:pir1] [MP:82 min] >gp:[GI:g148115]


[LN:ECOUHP] [AC:M17102] [OR:Escherichia coli] [SR:E. coli DNA, clone pRJK10]


[DB:genpept-bct1] [DE:E. coli uhp operon encoding UhpA, UhpB, UhpC, and UhpT


protein, (encoding hexose phosphate transport protein), complete cds, and


anilvBN operon encoded protein, 3′ end.] [NT:hexose phosphate transport


protein UhpT] [LE:3722] [RE:5113] [DI:direct] >gp:[GI:g148120]


[LN:ECOUHPABCT] [AC:M89479] [PN:hexosephosphate transport protein] [GN:uhpT]


[OR:Escherichia coli] [SR:Escherichia coli DNA] [DB:genpept-bct1]


[DE:Escherichia coli uhpABCT operon encoding hexosephosphateutilization


protein (uhpA) gene, complete cds, and hexosephosphate transport protein


(uhpB, uhpC, uhpT) genes, complete cds.] [LE:3722] [RE:5113] [DI:direct]


>gp:[GI:g2367259] [LN:AE000444] [AC:AE000444:U00096] [PN:hexose phosphate


transport protein] [GN:uhpT] [FN:transport; Transport of small molecules:]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 334 of 400 of the complete genome.] [NT:f463; 99 pct identical amino


acid sequence and] [LE:5590] [RE:6981] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_81525_f3_398
775
4547
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_816878_c3_637
776
4548
1632
543
2188
1.0e−226










Description


gp:[GI:g3800818] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative substrate] [GN:opp-1A] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:64] [RE:1524] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_822150_f2_262
777
4549
516
171
89
0.028










Description


gp:[GI:d1006984:g567946] [LN:PXMTGBP] [AC:D30753] [PN:21K protein]


[FN:Presumably cell to cell movement] [OR:Potato mop-top virus] [SR:Potato


mop-top virus (individual_isolate Todd) (library:Tb2-1] [DB:genpept-vrl]


[DE:Potato mop-top virus RNA for 51K protein, 13K protein, 21K protein and 8K


protein, complete cds.] [NT:putative] [LE:1961] [RE:2533] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_875765_c2_525
778
4550
210
69










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_969157_c1_420
779
4551
1026
341
220
8.5e−16










Description


gp:[GI:g3800818] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative substrate] [GN:opp-1A] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus oligopeptide transporter putative substrate binding


domain (opp-1A), oligopeptide transporter putative membrane permease domain


(opp-1B), oligopeptide transporter putative membrane permease domain


(opp-1C), oligopeptide transporter putative ATPase domain (opp-1D), and


oligopeptide transporter putative ATPase domain (opp-1F) genes, complete cds;


and unknown gene.] [LE:64] [RE:1524] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_9806718_c1_474
780
4552
762
253
862
3.4e−86










Description


gp:[GI:g3800822] [LN:AF076683] [AC:AF076683] [PN:oligopeptide transporter


putative ATPase domain] [GN:opp-1F] [OR:Staphylococcus aureus]


(DB:genpept-bct2] [DE:Staphylococcus aureus oligopeptide transporter


putative substrate binding domain (opp-1A), oligopeptide transporter putative


membrane permease domain (opp-1B), oligopeptide transporter putative membrane


permease domain (opp-1C), oligopeptide transporter putative ATPase domain


(opp-1D), and oligopeptide transporter putative ATPase domain (opp-1F) genes,


complete cds; and unknown gene.] [LE:4137] [RE:4892] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_984686_c1_478
781
4553
1221
406
1172
4.8e−119










Description


pir:[LN:C69670] [AC:C69670] [PN:glycine betaine/carnitine/choline ABC


transporter (ATP-binding) opuCA] [GN:opuCA] [CL:glycine betaine/proline


transport protein proV:ATP-binding cassette homology:CBS homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2271389] [LN:AF009352]


[AC:AF009352] [PN:ATPase] [GN:opuCA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis osmoprotectant transport system OpuC


including ATPase (opuCA), transmembrane protein (opuCB),


osmoprotectant binding protein precursor (opuCC) and transmembrane protein


(opuCD) genes, complete cds.] [NT:OpuCA; part of the osmoprotectant transport


system) [LE:860] [RE:2002] [DI:direct] >gp:[GI:e1186071:g2635896]


[LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine betaine/carnitine/choline


ABC] [GN:opuCA] [FN:high affinity transport of glycine betaine,]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 18 of 21):from 3399551 to 3609060.] [NT:alternate gene name:


yvbE] [LE:69373] [RE:70515] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_9970167_f3_393
782
4554
861
286
219
2.9e−25










Description


pir:[LN:E69796] [AC:E69796] [PN:two-component response regulator [YesM]


homolog yesN] [GN:yesN] [CL:response regulator homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182675:g2633009] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yesN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:similar to two-component response regulator


[YesM]] [LE:159260] [RE:160366] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000984_9973515_c1_495
783
4555
261
86










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10000183_c3_2061
784
4556
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10034627_f3_956
785
4557
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10195252_f2_807
786
4558
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10203501_c2_1757
787
4559
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10241433_c1_1640
788
4560
126
41
104
1.4e−05










Description


sp:[LN:YDGI_BACSU] [AC:P96707] [GN:YDGI] [OR:BACILLUS SUBTILIS] [EC:1.—.—.—]


[DE:PUTATIVE NAD(P)H NITROREDUCTASE YDGI,] [SP:P96707] [DB:swissprot]


>pir:LN:C69783] [AC:C69783] [PN:NADH dehydrogenase homolog ydgI] [GN:ydgI]


[CL:nitroreductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020152:g1881372] [LN:AB001488] [AC:AB001488] [GN:ydgI]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:SIMILAR TO NITROREDUCTASE.]


[LE:145410] [RE:146039] [DI:complement] >gp:[GI:e1182545:g2632879]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydgI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.) [NT:similar to NADH dehydrogenase]


[SP:P96707] [LE:11206] [RE:11835] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10332262_f1_254
789
4561
366
121










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1046885_f1_82
790
4562
2217
738
1356
1.5e−138










Description


gp:[GI:e245927:g2462047] [LN:ACRBDOXN] [AC:Z46863] [PN:polyphosphate kinase]


[GN:ppk] [OR:Acinetobacter sp. ADP1] [DB:genpept-bct1] [DE:Acinetobacter sp.


cysD, cobQ, sodM, lysS, rubA, rubB, estB, oxyR, ppk, mtgA, ORF2 and ORF3


genes.] [NT:putative; transcription of ppk is induced by] [LE:9244]


[RE:11319] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10585432_c1_1539
791
4563
591
196
171
2.3e−18










Description


sp:[LN:GGT_BACSU] [AC:P54422] [GN:GGT] [OR:BACILLUS SUBTILIS] [EC:2.3.2.2]


[DE:GAMMA-GLUTANYLTRANSPEPTIDASE PRECURSOR,] [SP:P54422] [DB:swissprot]


>pir:[LN:F69631] [AC:F69631:JC5867:PC4504] [PN:gamma-glutamyltransferase,


precursor:gamma glutamyl transpeptidase] [GN:ggt]


[CL:gamma-glutamyltransferase] [OR:Bacillus subtilis] [EC:2.3.2.2] [DB:pir2]


>gp:[GI:e1183499:g2634224] [LN:BSUB0010] [AC:Z99113:AL009126]


[PN:gamma-glutamyltranspeptidase] [GN:ggt] [FN:glutathione metabolism]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.3.2.2] [DE:Bacillus subtilis


complete genome (section 10 of 21):from 1781201 to 2014980.] [NT:alternate


gene name:pac] [SP:P54422] [LE:222733] [RE:224496] [DI:direct]


>gp:[GI:e1185314:g2634235] [LN:BSUB0011] [AC:Z99114:AL009126]


PN:gamma-glutamyltranspeptidase] [GN:ggt] [FN:glutathione metabolism]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.3.2.2] [DE:Bacillus subtilis


complete genome (section 11 of 21):from 2000171 to 2207900.] [NT:alternate


gene name:pac] [SP:P54422] [LE:3763] [RE:5526] [DI:direct]


>gp:[GI:g1491813] [LN:BSU49358] [AC:U49358]


[PN:gamma-glutamyltranspeptidase] [GN:ggt] [OR:Bacillus subtilis]


[SR:Bacillus subtilis strain = JH642] [DB:genpept-bct2] [DE:Bacillus subtilis


gamma-glutamyltranspeptidase (ggt) gene, complete cds.] [LE:250] [RE:2013]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10600010_c2_1931
792
4564
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10601625_c3_2039
793
4565
231
76
55
0.0050










Description


gp:[GI:e1286089:g3036830] [LN:CJAJ0856] [AC:AJ000856] [PN:ABC transporter


protein] [GN:kpsM] [OR:Campylobacter jejuni] [DB:genpept-bct1]


[DE:Campylobacter jejuni kpsM, kpsT genes.] [LE:134] [RE:916] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10605337_c2_1945
794
4566
747
248
706
1.1e−69










Description


gp:[GI:g666983] [LN:BSPAAT] [AC:X77636] [PN:putative ATP binding subunit]


[GN:ORF3] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis putative


amino acid transporter gene.] [NT:potential ABC-transport system]


[SP:P39456] [LE:1627] [RE:2370] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1063552_f3_982
795
4567
390
129










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1064050_f2_826
796
4568
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10657827_c1_1607
797
4569
1401
466
393
1.7e−36










Description


gp:[GI:e304997:g2294506] [LN:A37836] [AC:A37836] [OR:Streptomyces


pristinaespiralis] [DB:genpept-pat] [DE:Sequence 6 from Patent WO9408014.]


[NT:unnamed protein product] [LE:103] [RE:1689] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10667002_c2_1653
798
4570
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10667003_f1_29
799
4571
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10718762_f1_204
800
4572
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10736312_c1_1452
801
4573
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1074177_c2_1838
802
4574
825
274
417
4.8e−39










Description


pir:[LN:F64819] [AC:F64819] [PN:hypothetical protein b0822] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:d1036489:g4062389] [LN:D90719] [AC:D90719:AB001340]


[PN:Hypothetical protein 1] [OR:Escherichia coli] [SR:Escherichia


coli (strain:K12) DNA, clone:Kohara clone #206] [DB:genpept-bct1]


[DE:Escherichia coli genomic DNA. (18.2–18.6 min).] [NT:ORF_ID:o207#5;


similar to PIR Accession Number] [LE:13745] [RE:14560] [DI:complement]


>gp:[GI:d1036496:g4062396] [LN:D90720] [AC:D90720:AB001340] [PN:Hypothetical


protein 1] [OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone:Kohara clone #207] [DB:genpept-bct1] [DE:Escherichia coli genomic DNA.


(18.4–18.8 min).] [NT:ORF_ID:o207#5; similar to PIR Accession Number]


[LE:5774] [RE:6589] [DI:complement] >gp:[GI:g1787043] [LN:AE000184]


[AC:AE000184:U00096] [PN:orf, hypothetical protein] [GN:b0822] [FN:orf;


Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12


MG1655 section 74 of 400 of the complete genome.] [NT:f271; This 271 aa ORF


is 24 pct identical (16 gaps)] [LE:6609] [RE:7424] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10756925_f1_228
803
4575
1566
521
793
6.9e−70










Description


gp:[GI:d1020925:g2116759] [LN:D86418] [AC:D86418] [PN:YfnA] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA 69–70 degree region, partial sequence.]


[LE:7539] [RE:8927] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10938903_f1_322
804
4576
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10954127_f3_1025
805
4577
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10973385_c3_2080
806
4578
312
103
80
0.010










Description


gp:[GI:g4731918] [LN:AF111944] [AC:AF111944] [PN:development protein DG1122]


[GN:DG1122] [OR:Dictyostelium discoideum] [DB:genpept-inv2]


[DE:Dictyostelium discoideum AX4 development protein DG1122 (DG1122) gene,


partial cds.] [LE:207:829] [RE:744:>1036] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI750300985_11063801_f1_381
807
4579
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11132010_c1_1519
808
4580
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_115761_c3_2118
809
4581
1458
485
799
1.6e−79










Description


pir:[LN:S77243] [AC:S77243] [PN:hypothetical protein slr1363]


[OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1018310:g1652657] [LN:D90907] [AC:D90907:AB001339] [PN:hypothetical


protein] [GN:glgP] [OR:Synechocystis sp.] [SR:Synechocystis sp.


(strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 9/27, 1056467–1188885.] [NT:ORF_ID:slr1363] [LE:49200]


[RE:50702] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_117150_f1_173
810
4582
1311
436
1525
1.9e−156










Description


gp:[GI:g4096796] [LN:SCU40157] [AC:U40157] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus condensing-enzyme-like protein


(orf1) and SpoVE-like protein (orf2) genes, complete cds.] [NT:orf1; unknown


function; similar to] [LE:193] [RE:1362] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1173130_c1_1530
811
4583
2091
696
2666
2.3e−277










Description


pir:[LN:S46952] [AC:S46952:S63605] [PN:phosphotransferase system enzyme


II,, glucose-specific, factor IIA:glucose


permease:phosphoenolpyruvate:glucose phosphotransferase system enzyme II,


glucose-specific:phosphotransferase system enzyme II, glucose-specific,


factor 1:protein-Npi-phosphohistidine--sugar phosphotransferase,


glucose-specific, factor II] [GN:glcA:ptsG] [CL:phosphotransferase system


N-acetylglucosamine-specific enzyme II:phosphotransferase system


glucose-specific enzyme II, factor II homology:phosphotransferase system


glucose-specific enzyme II, factor III homology] [OR:Staphylococcus


carnosus] [EC:2.7.1.69] [DB:pir1] >gp:[GI:g1072418] [LN:SCGLCAB]


[AC:X93360:X80415] [GN:glcA] [OR:Staphylococcus carnosus] [DB:genpept-bct1]


[DE:S. carnosus glcA gene and glcB gene.] [LE:540] [RE:2567] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11756543_f2_497
812
4584
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1178593_f3_990
813
4585
1590
529
1527
1.1e−156










Description


pir:[LN:C69794] [AC:C69794] [PN:glutamate synthase (ferredoxin) homolog


yerD] [GN:yerD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182639:g2632973]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:yerD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [NT:similar to glutamate synthase


(ferredoxin)] [LE:115586] [RE:117163] [DI:complement]


>gp:[GI:e1167974:g2577963] [LN:BSYERABCD] [AC:Y15254] [PN:YerD protein]


[GN:yerD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


13 kB DNA fragment, from yerA to sapB gene.] [NT:similar to plectonema


boryanum large subunit of] [LE:3231] [RE:4808] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1180292_c1_1536
814
4586
1164
387
1050
4.0e−106










Description


pir:[LN:F70069] [AC:F70069] [PN:capsular polyglutamate biosynthesis homolog


ywsC] [GN:ywsC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184496:g2636115]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywsC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21):from 3597091 to 3809700.] [NT:similar to capsular polyglutamate


biosynthesis] [LE:101413] [RE:102594] [DI:complement]


>gp:[GI:e1184496:g2636115] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywsC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [NT:similar to


capsular polyglutamate biosynthesis] [LE:101413] [RE:102594] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11855463_c3_2075
815
4587
747
248
791
1.1e−78










Description


pir:[LN:H69611] [AC:H69611] [PN:3′-phosphoadenosine 5′-phosphosulfate


reductase, cysH:3′-phosphoadenylylsulfate reductase, thioredoxin dependent:


PAPS reductase:PAPS sulfotransferase] [GN:cysH] [OR:Bacillus subtilis]


[EC:1.8.99.4] [DB:pir2] >gp:[GI:e332183:g2462956] [LN:BSPYREYLO]


[AC:AJ000974] [PN:putative phospho-adenylylsulphate] [GN:cysH] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis pyrE to yloA gene region.]


[LE:548] [RE:1249] [DI:direct] >gp:[GI:e1185149:g2633930] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:phosphoadenosine phosphosulfate] [GN:cysH]


[FN:cysteine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.8.99.4] [DE:Bacillus subtilis complete genome (section 9 of 21):from


1598421 to 1807200.] [LE:31361] [RE:32062] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11881630_f2_658
816
4588
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11886592_c2_1671
817
4589
654
217
481
8.0e−46










Description


Sp:[LN:HIS2_HAEIN] [AC:P44434] [GN:HISI:HISIE:HI0475] [OR:HAEMOPHILUS


INFLUENZAE] [EC:3.5.4.19:3.6.1.31] [DE:PYROPHOSPHOHYDROLASE,] [SP:P44434]


[DB:swissprot] >pir:[LN:A64071] [AC:A64071] [PN:phosphoribosyl-AMP


cyclohydrolase, / phosphoribosyl-ATP pyrophosphatase,] [CL:hisI bifunctional


enzyme:hisI bifunctional enzyme homology:hisI protein homology]


[OR:Haemophilus influenzae] [EC:3.5.4.19:3.6.1.31] [DB:pir2]


>gp:[GI:g1573454] [LN:U32730] [AC:U32730:L42023] [PN:phosphoribosyl-AMP


cyclohydrolase /] [GN:HI0475] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 45 of 163 of the


complete genome.] [NT:similar to SP:P06989 GB:D43637 GB:U02072 GB:X03974]


[LE:4576] [RE:5241] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11955127_f1_420
818
4590
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_119633_f1_70
819
4591
1389
462
494
3.3e−47










Description


pir:[LN:B69680] [AC:B69680:140510] [PN:para-nitrobenzyl esterase,] [GN:pnbA]


[CL:cholinesterase homology] [OR:Bacillus subtilis] [EC:3.1.1.—] [DB:pir2]


>gp:[GI:g1762126] [LN:BSU46134] [AC:U46134] [PN:intracellular esterase B]


[GN:estB] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.1.1.1] [DE:Bacillus


subtilis putative orf1 unknown protein, putative transcriptional regulator


(slr), and intracellular esterase B (estB) genes, complete cds.] [NT:EstB;


esterase of the serine-hydrolase family] [LE:1035] [RE:2504] [DI:direct]


>gp:[GI:e1186127:g2635952] [LN:BSUB0018] [AC:Z99121:AL009126]


[PN:para-nitrobenzyl esterase (intracellular] [GN:pnbA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:3.1.1.1] [DE:Bacillus subtilis complete


genome (section 18 of 21):from 3399551 to 3609060.] [NT:alternate gene name:


estB] [LE:130145] [RE:131614] [DI:direct] >gp:[GI:e238702:g1495277]


[LN:BSYVEFGNS] [AC:Z71928] [PN:para-nitrobenzyl esterase] [GN:pnbA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis pnbA, sigL,


yve[J, K, L, M, N, O, P, Q, R, S, T] and yvf[A, B, C, D, E, F, G, H] genes.] [LE:132]


[RE:1601] [DI:complement] >gp:[GI:e313129:g1945688] [LN:BSZ94043]


[AC:Z94043] [PN:para-nitrobenzyl esterase] [GN:pnbA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).] [LE:50057]


[RE:51526] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1207287_c2_1669
820
4592
621
206
365
1.6e−33










Description


sp:[LN:HIS1_LACLA] [AC:Q02129] [GN:HISG] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:2.4.2.17] [DE:ATP


PHOSPHORIBOSYLTRANSFERASE,] [SP:Q02129] [DB:swissprot] >pir:[LN:D45734]


[AC:D45734] [PN:HisG] [OR:Lactococcus lactis subsp. lactis] [DB:pir2]


>gp:[GI:g2565141] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:HisG]


[GN:hisG] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:phosphoribosyl-ATP


synthetase] [LE:3125] [RE:3751] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1207938_c3_2244
821
4593
828
275
953
7.7e−96










Description


gp:[GI:g4433636] [LN:AF029224] [AC:AF029224:AF029225] [PN:NirC] [GN:nirC]


[FN:putative nitrite transporter] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus nir and nar operons, complete


sequences.] [LE:226] [RE:1056] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1230437_c1_1528
822
4594
408
135
202
2.9e−16










Description


sp:[LN:YWBH_BACSU] [AC:P39591] [GN:YWBH:IPA-23R] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 14.3 KD PROTEIN IN EPR-GALK INTERGENIC REGION] [SP:P39591]


[DB:swissprot] >pir:[LN:S39678] [AC:S39678:F70051] [PN:ywbH


protein:hypothetical protein ipa-23r] [GN:ywbH] [CL:conserved hypothetical


protein HI1297] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g413947]


[LN:BSGENR] [AC:X73124] [GN:ipa-23r] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39591]


[LE:23968] [RE:24354] [DI:complement] >gp:[GI:e1186331:g2636367]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywbH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21):from 3798401 to 4010550.] [NT:alternate gene name:ipa-23r]


[SP:P39591] [LE:133605] [RE:133991] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_12600305_f1_260
823
4595
285
94










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_12690706_c3_2230
824
4596
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_12697136_f2_862
825
4597
873
290
1519
8.1e−156










Description


pir:[LN:S77609] [AC:S77609] [PN:probable intercellular adhesion protein B


precursor:icaB protein] [GN:icaB] [OR:Staphylococcus epidermidis] [DB:pir2]


>gp:[GI:g1161381] [LN:SEU43366] [AC:U43366] [PN:IcaB] [GN:icaB]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis operon mediating intercellular adhesion:IcaR, IcaA, IcaD, IcaB,


and IcaC genes, complete cds.] [LE:2265] [RE:3134] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_12698410_f3_1111
826
4598
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_127002_f1_259
827
4599
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1281627_c3_2201
828
4600
1293
430
1106
4.7e−112










Description


pir:[LN:B69876] [AC:B69876] [PN:acetylornithine deacetylase homolog ylmB]


[GN:ylmB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185127:g2633908]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:ylmB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to acetylornithine deacetylase]


[LE:8531] [RE:9811] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_129678_f1_53
829
4601
1416
471
1269
2.5e−129










Description


sp:[LN:YDGF_BACSU] [AC:P96704] [GN:YDGF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSPORT PROTEIN IN EXPZ-DINB INTERGENIC REGION]


[SP:P96704] [DB:swissprot] >pir:[LN:H69782] [AC:H69782] [PN:amino acid ABC


transporter (permease) homolog ydgF] [GN:ydgF] [CL:arginine permease]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020148:g1881368] [LN:AB001488]


[AC:AB001488] [GN:ydgF] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:PROBABLE AMINO


ACID TRANSPORT PERMIASE.] [LE:139917] [RE:141293] [DI:complement]


>gp:[GI:e1182528:g2632862] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydgF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:similar to


amino acid ABC transporter (permease)] [SP:P96704] [LE:203663] [RE:205039]


[DI:complement] >gp:[GI:e1182541:g2632875] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:ydgF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:similar to amino acid ABC transporter (permease)]


[SP:P96704] [LE:5713] [RE:7089] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1298202_f2_822
830
4602
1986
661
1779
2.3e−183










Description


pir:[LN:G69848] [AC:G69848] PN:fructose phosphotransferase system enzyme


homolog yjdD] [GN:yjdD] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183221:g2633555] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:yjdD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to


fructose phosphotransferase system] [LE:77806] [RE:79575] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13089052_c3_2246
831
4603
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1350051_c3_2086
832
4604
915
304
1245
8.7e−127










Description


gp:[GI:g4574118] [LN:AF009415] [AC:AF009415] [PN:choline transporter]


[GN:cudT] [OR:Staphylococcus xylosus] [DB:genpept-bct2] [DE:Staphylococcus


xylosus choline transporter (cudT), putative regulatory protein (cudC),


glycine betaine aldehyde dehydrogenase (cudA), and choline dehydrogenase


(cudB) genes, complete cds.] [NT:CudT] [LE:811] [RE:2433] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1351687_c1_1515
833
4605
906
301
739
3.6e−73










Description


gp:[GI:g1644433] [LN:SAU31175] [AC:U31175] [PN:D-specific D-2-hydroxyacid


dehydrogenase] [GN:ddh] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus D-specific D-2-hydroxyacid dehydrogenase (ddh)


gene, complete cds.] [NT:36.7 kDa protein; similar to NAD+-linked D-LDH,]


[LE:259] [RE:1251] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1359635_f3_1248
834
4606
471
156
297
2.5e−26










Description


pir:[LN:F69870] [AC:F69870] [PN:general stress protein homolog ykzA]


[GN:ykzA] [CL:hypothetical protein yklA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1181516:g2632036] [LN:BSAJ2571] [AC:AJ002571] [PN:YknA] [GN:yknA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


168 56 kb DNA fragment between xlyA and ykoR.] [NT:homologous to OsmC from


Escherichia coli] [LE:34145] [RE:34555] [DI:direct]


>gp:[GI:e1183336:g2633670] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykzA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:alternate


gene name:yzzE; similar to general] [LE:187094] [RE:187504] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1366012_f1_356
835
4607
213
70
81
0.014










Description


sp:[LN:PF2R_HUMAN] [AC:P43088] [GN:PTGFR] [OR:HOMO SAPIENS] [SR:,HUMAN]


[DE:RECEPTOR] (PGF2 ALPHA RECEPTOR)] [SP:P43088] [DB:swissprot]


>pir:[LN:A49973] [AC:A49973] [PN:prostanoid FP receptor] [GN:PTGFR:FP]


[CL:prostaglandin E receptor EP1] [OR:Homo sapiens] [SR:, man] [DB:pir2]


[MP:1p31.1-1p31.1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13678300_f1_40
836
4608
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13711588_f2_551
837
4609
285
94
81
0.0019










Description


pir:[LN:S53365] [AC:S53365] [PN:mucin 5AC (clone CEL2)] [GN:MUC5AC]


[OR:Homo sapiens] [SR:, man] [DB:pir2] [MP:11p15.5-11p15.5]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1376926_c3_2008
838
4610
849
282
438
2.9e−41










Description


gp:[GI:g3127079] [LN:AF061070] [AC:AF061070] [PN:PtxC] [GN:ptxC]


[OR:Pseudomonas stutzeri] [DB:genpept-bct2] [DE:Pseudomonas stutzeri Orf117


(orf117), Orf86 (orf86) genes, complete cds; and ptXABCDE operon, partial


sequence.] [NT:putative inner membrane component of] [LE:3217] [RE:4044]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13796876_f2_710
839
4611
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13835462_c3_2043
840
4612
1449
482
1386
1.0e−141










Description


gp:[GI:e1299584:g3687418] [LN:BLY17554] [AC:Y17554] [PN:permease] [GN:arcD]


[OR:Bacillus licheniformis] [DB:genpept-bct1] [DE:Bacillus licheniformis


arcA, arcB, arcC and arcD genes.] [LE:2579] [RE:3985] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13843910_c1_1637
841
4613
216
71
258
3.9e−22










Description


gp:[GI:e1429613:g4756156] [LN:A67169] [AC:A67169] [PN:NART GENE] [FN:NITRATE


TRANSPORT] [OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 9 from


Patent EP0805205.] [LE:538] [RE:1704] [DI:direct] >gp:[GI:g2529402]


[LN:SCU40014] [AC:U40014] [PN:nitrate transporter] [GN:narT]


[OR:Staphylococcus carnosus] [SR:Staphylococcus carnosus strain = TM300]


[DB:genpept-bct2] [DE:Staphylococcus carnosus nitrate transporter (narT)


gene, complete cds.] [NT:NarT] [LE:90] [RE:1256] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13866433_f2_661
842
4614
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13869827_f3_1087
843
4615
2385
794
2176
1.9e−225










Description


pir:[LN:E70041] [AC:E70041] [PN:probable copper-transporting ATPase, yvgX]


[GN:yvgX] [CL:Bacillus probable copper-transporting ATPase yvgx:ATPase


nucleotide-binding domain homology:ATPase transduction domain


homology:heavy-metal-associated homology] [OR:Bacillus subtilis]


[EC:3.6.1.—] [DB:pir1] >gp:[GI:e1186038:g2635863] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvgX] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to heavy metal-transporting ATPase]


[LE:40633] [RE:43044] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_13955288_f1_5
844
4616
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14113806_f2_559
845
4617
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14222942_f2_747
846
4618
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1440890_f1_362
847
4619
339
112










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14454393_c3_2148
848
4620
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460882_c1_1400
849
4621
177
58
198
7.8e−16










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y17G] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460882_c3_1975
850
4622
177
58
242
1.7e−20










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460882_c3_2098
851
4623
210
69
264
7.9e−23










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460882_c3_2112
852
4624
177
58
226
8.4e−19










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460932_f1_34
853
4625
177
58
208
6.8e−17










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U356353 [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460932_f2_467
854
4626
177
58
196
1.3e−15










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14460932_f3_1045
855
4627
177
58
218
5.9e−18










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14480312_c1_1349
856
4628
1308
435
588
3.6e−57










Description


pir:[LN:F69581] [AC:F69581] [PN:acetoin dehydrogenase E2 component


(dihydrolipoamide acetyltra) acoC] [GN:acoC] [CL:dihydrolipoamide


acetyltransferase:lipoyl/biotin-binding homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182798:g2633132] [LN:BSUB0005] [AC:Z99108:AL009126]


[PN:acetoin dehydrogenase E2 component] [GN:acoC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:alternate gene name:yfjI] [LE:77735] [RE:78931]


[DI:direct] >gp:[GI:d1025206:g2780393] [LN:D78509] [AC:D78509] [PN:YfjI]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:AC327) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis YfjG-YfjR genes, complete cds.]


[LE:7394] [RE:8590] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14490756_f1_295
857
4629
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14492125_f3_1310
858
4630
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14495712_c1_1593
859
4631
297
98
109
5.0e−06










Description


gp:[GI:g4894301] [LN:AF065404] [AC:AF065404] [PN:pXO1-85] [OR:Bacillus


anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence plasmid PX01,


complete sequence.] [LE:99636] [RE:100319] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14534387_f3_1231
860
4632
225
74
91
0.00017










Description


gp:[GI:g1778751] [LN:SLU73444] [AC:U73444] [PN:SLUSH A] [GN:slushA]


[FN:mediates haemolytic activity] [OR:Staphylococcus lugdunensis]


[DB:genpept-bct1] [DE:Staphylococcus lugdunensis SLUSH A (SlushA), SLUSH B


(slushB), and hemolysin (slushC) genes, complete cds.] [LE:570] [RE:701]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14552215_c3_2231
861
4633
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14562760_f1_359
862
4634
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14565637_f2_883
863
4635
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14626432_c2_1687
864
4636
2421
806
1387
7.8e−142










Description


sp:[LN:SECA_STAAU] [AC:O06446] [GN:SECA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:PREPROTEIN TRANSLOCASE SECA SUBUNIT] [SP:O06446] [DB:swissprot]


>gp:[GI:g2078390] [LN:SAU97062] [AC:U97062] [PN:SecA] [GN:secA]


[FN:secretion] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus NCTC 8325 SecA (secA) gene, complete cds.]


[LE:440] [RE:2971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14644037_c3_2056
865
4637
1575
524
401
2.8d−40










Description


sp:[LN:YBJT_ECOLI] [AC:P75822] [GN:YBJT] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 53.7 KD PROTEIN IN ARTP-POXB INTERGENIC REGION] [SP:P75822]


[DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14650312_c3_2045
866
4638
1170
389
319
1.2e−28










Description


gp:[GI:e1423961:g4584121] [LN:BCE7788] [AC:AJ007788] [GN:capA] [OR:Bacillus


cereus] [DB:genpept-bct1] [DE:Bacillus cereus ilvD, ilvA, capA genes, orf4,


orf5 and orf6, partial.] [NT:related sequence M24150] [LE:2729] [RE:3832]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14662577_c3_1984
867
4639
537
178










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14720378_c3_2022
868
4640
726
241
292
8.5e−26










Description


pir:[LN:D70380] [AC:D70380] [PN:hypothetical protein aq_928] [GN:aq_928]


[OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2983456] [LN:AE000714]


[AC:AE000714:AE000657] [PN:putative protein] [GN:aq_928] [OR:Aquifex


aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 46 of 109 of the


complete genome.] [LE:6398] [RE:6988] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14725887_f3_1312
869
4641
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14729702_c2_1699
870
4642
2031
676
288
7.6e−22










Description


gp:[GI:g4322670] [LN:AF094508] [AC:AF094508] [PN:dentin phosphoryn] [OR:Homo


sapiens] [SR:human] [DB:genpept-pri4] [DE:Homo sapiens dentin phosphoryn


mRNA, complete cds.] [LE:<1] [RE:2367] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14742887_c2_1735
871
4643
606
201










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14742937_c1_1449
872
4644
1203
400
94
0.0033










Description


gp:[GI:g2935567] [LN:AF049856] [AC:AF049856] [PN:M protein] [GN:emm]


[OR:Streptococcus pyogenes] [DB:genpept-bct2] [DE:Streptococcus pyogenes


strain SS1457 M protein (emm) gene, partial cds.] [LE:<1] [RE:>403]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14843762_f3_1171
873
4645
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14851551_f1_417
874
4646
993
330
1143
5.6e−116










Description


gp:[GI:g2565150] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:unknown]


[OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis unknown


gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown, HisB


(hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:ORF14] [LE:10850] [RE:11809]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14851713_c2_1650
875
4647
966
321
941
1.4e−94










Description


pir:[LN:D69581] [AC:D69581] [PN:acetoin dehydrogenase E1 component


(TPP-dependent alpha subunit) acoA] [GN:acoA] [CL:pyruvate dehydrogenase


(lipoamide) alpha chain:thiamine pyrophosphate-binding domain homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182796:g2633130] [LN:BSUB0005]


[AC:Z99108:AL009126] [PN:acetoin dehydrogenase E1 component] [GN:acoA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 5 of 21):from 802821 to 1011250.] [NT:alternate gene name:


yfjK] [LE:75688] [RE:76689] [DI:direct] >gp:[GI:d1025208:g2780395]


[LN:D78509] [AC:D78509] [PN:YfjK] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


YfjG-YfjR genes, complete cds.] [LE:9636] RE:10637] [DI:complement]


>gp:[GI:g2957146] [LN:AF006075] [AC:AF006075] [PN:TPP-dependent acetoin


dehydrogenase, E1] [GN:acoA] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis acetoin dehydrogenase enzyme system gene


cluster, ribosomal protein L6-like protein gene, partial cds,


TPP-dependentacetoin dehydrogenase, E1 alpha-subunit (acoA),


TPP-dependentacetoin dehydrogenase, E1 beta-subunit (acoB),


dihydrolipoamideacetyltransferase (acoC) and dihydrolipoamide dehydrogenase


(acoL) genes, complete cds, and regulatory protein (acoR) gene, partial cds.]


[NT:alpha subunit of the E1 component of the acetoin] [LE:825] [RE:1826]


[DI:direct] >gp:[GI:g2957146] [LN:AF006075] [AC:AF006075] [PN:TPP-dependent


acetoin dehydrogenase, E1] [GN:acoA] [OR:Bacillus subtilis] [DB:genpept]


[DE:Bacillus subtilis acetoin dehydrogenase enzyme system gene


cluster, ribosomal protein L6-like protein gene, partial cds,


TPP-dependentacetoin dehydrogenase, E1 alpha-subunit (acoA),


TPP-dependentacetoin dehydrogenase, E1 beta-subunit (acoB),


dihydrolipoamideacetyltransferase (acoC) and dihydrolipoamide dehydrogenase


(acoL) genes, complete cds, and regulatory protein (acoR) gene, partial cds.]


[NT:alpha subunit of the E1 component of the acetoin] [LE:825] [RE:1826]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14879667_c2_1781
876
4648
867
288
735
9.7e−73










Description


sp:[LN:PANC_BACSU] [AC:P52998] [GN:PANC] [OR:BACILLUS SUBTILIS] [EC:6.3.2.1]


[DE:(PANTOATE ACTIVATING ENZYME)] [SP:P52998] [DB:swissprot]


>pir:[LN:H69671] [AC:H69671] [PN:pantothenate synthetase panC] [GN:panC]


[CL:pantoate--beta-alanine ligase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1146241] [LN:BACYPIA] [AC:L47709] [PN:pantothenate synthetase]


[GN:panC] [FN:pantothenic acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.3.2.1] [DE:Bacillus subtilis (clone YAC15-6B) ypiABF


genes, qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene,


ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene,


complete cds's.] [NT:40.8% of identity to the Escherichia coli] [LE:14128]


[RE:14988] [DI:direct] >gp:[GI:e1183687:g2634660] [LN:BSUB0012]


[AC:Z99115:AL009126] [PN:pantothenate synthetase] [GN:panC] [FN:pantothenate


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.2.1]


[DE:Bacillus subtilis complete genome (section 12 of 21):from 2195541 to


2409220.] [SP:P52998] [LE:156679] [RE:157539] DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14880051_f1_116
877
4649
1971
656
2450
1.8e−254










Description


pir:[LN:C69621] [AC:C69621] [PN:fructose-bisphosphatase,] [GN:fbp:yydE]


[CL:Bacillus subtilis fructose-bisphosphatase:phosphoesterase core


homology] [OR:Bacillus subtilis] [EC:3.1.3.11] [DB:pir1]


>gp:[GI:d1011939:g1064791] [LN:BACGNTZA] [AC:D78193] [GN:yydE] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis 36 kb sequence between gntZ and trnY genes encoding 34


ORFs.] [LE:9575] [RE:11590] [DI:direct] >gp:[GI:e1184745:g2636566]


[LN:BSUB0021] [AC:Z99124:AL009126] [PN:fructose-1,6-bisphosphatase] [GN:fbp]


[FN:gluconeogenesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.1.3.11]


[DE:Bacillus subtilis complete genome (section 21 of 21):from 3999281 to


4214814.] [NT:alternate gene name:yydE] [LE:127957] [RE:129972] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14881250_f3_1040
878
4650
999
332
1407
5.9e−144










Description


gp:[GI:g1644433] [LN:SAU31175] [AC:U31175] [PN:D-specific D-2-hydroxyacid


dehydrogenase] [GN:ddh] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus D-specific D-2-hydroxyacid dehydrogenase (ddh)


gene, complete cds.] [NT:36.7 kDa protein; similar to NAD+-linked D-LDH,]


[LE:259] [RE:1251] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14881908_c1_1494
879
4651
213
70
75
0.042










Description


gp:[GI:g4406247] [LN:AF105113] [AC:AF105113] [PN:putative oligosaccharide


repeat unit] [GN:cps19AJ] [OR:Streptococcus pneumoniae] [DB:genpept-bct2]


[DE:Streptococcus pneumoniae type 19A putative oligosaccharide repeat unit


transporter (cps19AJ) gene, partial cds; UDP-N-acetylglucosamine-2-epimerase


(cps19AK), glucose-1-phosphate thymidylyltransferase (cps19AL),


dTDP-4-keto-6-deoxyglucose-3,5-epimerase (cps19AM),


dTDP-glucose-4,6-dehydratase (cps19AN), and dTDP-L-rhamnose synthase


(cps19AO) genes, complete cds; and AliA (aliA) gene, partial cds.]


[NT:Cps19AJ] [LE:<1] [RE:818] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14901578_c3_2235
880
4652
888
295
598
3.2e−58










Description


pir:[LN:B69772] [AC:B69772 ] [PN:conserved hypothetical protein ydbO]


[GN:ydbO] [CL:conserved hypothetical protein MJ0449] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1020044:g1881264] [LN:AB001488] [AC:AB001488] [GN:ydbO]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:FUNCTION UNKNOWN, SIMILAR PRODUCT


IN B. SUBTILIS] [LE:39929] [RE:40801] [DI:direct] >gp:[GI:e1182420:g2632754]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydbO] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [NT:similar to hypothetical proteins]


[LE:103673] [RE:104545] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14931501_c2_1790
881
4653
1062
353
802
7.7e−80










Description


pir:[LN:E71373] [AC:E71373] [PN:probable regulatory protein (pfoS/R)]


[GN:TP0038] [OR:Treponema pallidum subsp. pallidum] [SR:, syphilis


spirochete] [DB:pir2] >gp:[GI:g3322295] [LN:AE001189] [AC:AE001189:AE000520]


[PN:regulatory protein (pfoS/R)] [GN:TP0038] [OR:Treponema pallidum]


(DB:genpept-bct2] [DE:Treponema pallidum section 5 of 87 of the complete


genome.] [NT:similar to GP:1354775 percent identity:100.00;] [LE:1177]


[RE:2229] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14979713_c1_1590
882
4654
483
160
251
1.9e−21










Description


sp:[LN:YORZ_LISMO] AC:P33385] [OR:LISTERIA MONOCYTOGENES] [DE:REGION


(ORFZ)] [SP:P33385] [DB:swissprot] >pir:[LN:F43868] [AC:F43868] [PN:ORFZ]


[OR:Listeria monocytogenes] [DB:pir2] >gp:[GI:g149647] [LN:LISACTLDH]


[AC:M82881] [OR:Listeria monocytogenes] [SR:Listeria monocytogenes (strain


L028) DNA] [DB:genpept-bct1] [DE:Listeria monocytogenes lecithinase, lactate


dehydrogenase (actA) gene complete cds, (plcB) gene complete cds, (ldh) gene


complete cds.] [NT:ORFZ] [LE:3582] [RE:4043] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15052187_f3_1188
883
4655
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15052188_f2_697
884
4656
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15126592_f3_1294
885
4657
1086
361
1831
7.0e−189










Description


pir:[LN:S77610] [AC:S77610] [PN:probable intercellular adhesion protein


C:icaC protein] [GN:icaC] [OR:Staphylococcus epidermidis] [DB:pir2]


>gp:[GI:g1161382] [LN:SEU43366] [AC:U43366] [PN:IcaC] [GN:icaC]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis operon mediating intercellular adhesion:IcaR, IcaA, IcaD, IcaB,


and IcaC genes, complete cds.] [LE:3121] [RE:4188] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1537_c1_1639
886
4658
153
50
89
0.00073










Description


sp:[LN:YDGI_BACSU] [AC:P96707] [GN:YDGI] [OR:BACILLUS SUBTILIS] [EC:1.—.—.—]


[DE:PUTATIVE NAD(P)H NITROREDUCTASE YDGI,] [SP:P96707] [DB:swissprot]


>pir:[LN:C69783] [AC:C69783] [PN:NADH dehydrogenase homolog ydgI] [GN:ydgI]


[CL:nitroreductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020152:g1881372] [LN:AB001488] [AC:AB001488] [GN:ydgI]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:SIMILAR TO NITROREDUCTASE.]


[LE:145410] [RE:146039] [DI:complement] >gp:[GI:e1182545:g2632879]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydgI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [NT:similar to NADH dehydrogenase]


[SP:P96707] [LE:11206] [RE:11835] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_156387_c1_1367
887
4659
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15671925_c3_2051
888
4660
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_157093_c2_1947
889
4661
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15711457_f3_919
890
4662
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_157513_c3_2168
891
4663
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15752187_f2_664
892
4664
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_157807_c1_1613
893
4665
1584
527
1780
1.8e−183










Description


gp:[GI:e316580:g2791907] [LN:SSK11MECA] [AC:Y13094] [GN:CTORF585]


[OR:Staphylococcus sciuri] [DB:genpept-bct1] [DE:S. sciuri mecA gene, strain


K11 (792).] [LE:<1] [RE:1757] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15814001_f1_269
894
4666
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_158411_c3_2104
895
4667
993
330
870
4.8e−87










Description


sp:[LN:LDH_BACSU] [AC:P13714] [GN:LDH:LCTE] [OR:BACILLUS SUBTILIS]


[EC:1.1.1.27] [DE:L-LACTATE DEHYDROGENASE,] [SP:P13714] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15894527_f3_1275
896
4668
267
88










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_15914762_f1_251
897
4669
579
192
654
3.7e−64










Description


gp:[GI:g4574119] [LN:AF009415] [AC:AF009415] [PN:putative regulatory


protein] [GN:cudC] [OR:Staphylococcus xylosus] [DB:genpept-bct2]


[DE:Staphylococcus xylosus choline transporter (cudT), putative regulatory


protein (cudC), glycine betaine aldehyde dehydrogenase (cudA), and choline


dehydrogenase (cudB) genes, complete cds.] [NT:CudC] [LE:2604] [RE:3164]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16048828_c3_2224
898
4670
261
86










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_164715_c3_2251
899
4671
951
316
786
3.8e−78










Description


gp:[GI:g4433641] [LN:AF029224] [AC:AF029224:AF029225] [PN:SirB] [GN:sirB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to C-terminus of


Esherichia coli CysG.] [LE:5079] [RE:6032] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16600062_f1_117
900
4672
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16689067_c1_1368
901
4673
597
198
470
1.2e−44










Description


sp:[LN:HIS7_LACLA] [AC:Q02134] [GN:HISB] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.2.1.19]


[DE:IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE, (IGPD)] [SP:Q02134]


[DB:swissprot] >pir:[LN:G45734] [AC:G45734:C36890] [PN:HisB]


[CL:imidazoleglycerol-phosphate dehydratase:imidazoleglycerol-phosphate


dehydratase homology] [OR:Lactococcus lactis subsp. lactis] [DB:pir2]


>gp:[GI:g2565143] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:HisB]


[GN:hisB] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:dehydratase] [LE:5869]


[RE:6471] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16798125_c2_1862
902
4674
441
146
154
2.6e−10










Description


sp:[LN:GUDT_BACSU] [AC:P42237] [GN:YCBE] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


GLUCARATE TRANSPORTER] [SP:P42237] [DB:swissprot] >pir:[LN:H69752]


[AC:H69752] [PN:probalble glucarate transporter] [GN:ycbE] [CL:hexuronate


transporter] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1007040:g709999]


[LN:BACYCB20] [AC:D30808] [PN:glucarate dehydratase] [GN:ycbE] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168TrpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA around 20 degrees region of chromosome containing


yckA-T genes.] [LE:3924] [RE:5291] [DI:direct] >gp:[GI:e1182200:g2632534]


[LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycbE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21):from 194651 to 415810.] [NT:similar to glucarate transporter]


[SP:P42237] [LE:75738] [RE:77105] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16802312_c3_2228
903
4675
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16834377_c2_1861
904
4676
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_16838207_f1_122
905
4677
288
95
175
2.1e−13










Description


Sp:[LN:YJDJ_ECOLI] [AC:P39274] [GN:YJDJ] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 10.5 KD PROTEIN IN DCUB-LYSU INTERGENIC REGION (O90A)]


[SP:P39274] [DB:swissprot] >pir:[LN:S56356] [AC:S56356:F65222]


[PN:hypothetical 10.5K protein (dcub-lysu intergenic region):hypothetical


protein o90a] [GN:yjd] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g536972]


[LN:ECOUW93] [AC:U14003] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes.]


[NT:ORF_o90a] [LE:42913] [RE:43185] [DI:direct] >gp:[GI:g1790569]


[LN:AE000485] [AC:AE000485:U00096] [PN:orf, hypothetical protein] [GN:yjdJ]


[FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia


coli K-12 MG1655 section 375 of 400 of the complete genome.] [NT:o90a; 100


pct identical amino acid sequence and] [LE:6496] [RE:6768] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_17010952_c3_2147
906
4678
864
287
639
1.4e−62










Description


pir:[LN:G70080] [AC:G70080] [PN:conserved hypothetical protein yxkD]


[GN:yxkD] [CL:conserved hypothetical protein yitT] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1186383:g2636419] [LN:BSUB0020] [AC:Z99123:AL009126]


[GN:yxkD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 20 of 21):from 3798401 to 4010550.]


[NT:similar to hypothetical proteins] [LE:188319] [RE:189155]


[DI:complement] >gp:[GI:d1012387:g1783243] [LN:D83026] [AC:D83026:D45911]


[GN:yxkD] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1)


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence covering


lic-cel region.] [NT:homologous to jojC gene product (B. subtilis;]


[LE:35310] [RE:36146] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_179010_c3_2136
907
4679
546
181
344
2.6e−31










Description


sp:[LN:OGT_HAEIN] [AC:P44687] [GN:OGT:DAT1:HI0402] [OR:HAEMOPHILUS


INFLUENZAE] [EC:2.1.1.63] [DE:ALKYLTRANSFERASE)] [SP:P44687] [DB:swissprot]


>pir:[LN:G64065] [AC:G64065] [PN:methylated-DNA--protein-cysteine


S-methyltransferase homolog] [CL:methylated-DNA--protein-cysteine


S-methyltransferase:methylated-DNA--protein-cysteine S-methyltransferase


homology] [OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g1573373]


[LN:U32723] [AC:U32723:L42023] [PN:methylated-DNA--protein-cysteine]


[GN:HI0402] [OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus


influenzae Rd section 38 of 163 of the complete genome.] [NT:similar to


SP:P11742 GB:X15659 PID:39876] [LE:9611] [RE:10183] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_181885_c3_2161
908
4680
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_194003_f1_134
909
4681
165
54
55
0.025










Description


sp:[LN:RK19_GUITH] [AC:O78409] [GN:RPL19] [OR:GUILLARDIA THETA]


[SR:,CRYPTOMONAS PHI] [DE:CHLOROPLAST 505 RIBOSOMAL PROTEIN L19] [SP:O78409]


[DB:swissprot] >gp:[GI:g3602933] [LN:AF041468]


[AC:AF041468:X14171:X62349:X51511:X14504:X52158:X52912:X56806:M7654 7]


[PN:ribosomal protein L19] [GN:rpl19] [OR:Chloroplast Guillardia theta]


[SR:Guillardia theta] [DB:genpept-pln2] [DE:Guillardia theta complete


plastid genome.] [LE:181] [RE:573] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19531436_c3_2069
910
4682
1365
454
120
4.7e−05










Description


gp:[GI:g1813493] [LN:BFU64314] [AC:U64314] [PN:hydrophobic protein]


[OR:Bacillus firmus] [DB:genpept-bct1] [DE:Bacillus firmus putative


hydrophobic protein gene, partial cds.] [NT:similar to Bacillus subtilis


putative protein] [LE:193] [RE:>795] [D1:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19562805_c3_2135
911
4683
213
70
69
0.036










Description


sp:[LN:VNB_INBMF] [AC:P16200] [GN:NB] [OR:INFLUENZA B VIRUS)


[SR:B/MEMPHIS/3/89,] [DE:NB GLYCOPROTEIN] [SP:P16200] [DB:swissprot]


>pir:[LN:A36825] [AC:A36825] [PN:NB glycoprotein] [CL:influenza B virus NB


glycoprotein] [OR:influenza B virus] [DB:pir1] [MP:segment 6]


>gp:[GI:g325221] [LN:FLBNAE] [AC:M30635] [OR:Influenza B virus]


[SR:Influenza B/Memphis/3/89, cDNA to viral RNA] [DB:genpept-vrl]


[DE:Influenza B/Memphis/3/89, neuraminidase and NB (seg 6) RNA, complete


cds.] [NT:NB protein] [LE:16] [RE:315] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19564702_c3_2073
912
4684
477
158
397
6.3e−37










Description


sp:[LN:GSHZ_NICSY] [AC:P30708] [OR:NICOTIANA SYLVESTRIS] [SR:,WOOD TOBACCO]


[EC:1.11.1.9] [DE:GLUTATHIONE PEROXIDASE HOMOLOG 6P229,] [SP:P30708]


[DB:swissprot] >pir:[LN:S20501] [AC:S20501] [PN:glutathione peroxidase


homolog] [CL:glutathione peroxidase] [OR:Nicotiana sylvestris] [SR:, wood


tobacco] [DB:pir2] >gp:[GI:g19739] [LN:NS6P229] [AC:X60219] [OR:Nicotiana


sylvestris] [SR:wood tobacco] [DB:genpept-pln1] [DE:N. sylvestris mRNA for


6P229 polypeptide homologous to animal glutathione peroxidases.]


[NT:homologous to animal glutathione peroxidases] [SP:P30708] [LE:154]


[RE:663] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19585877_c1_1478
913
4685
1212
403
834
3.1e−83










Description


pir:[LN:H69817] [AC:H69817] [PN:aminoacylase homolog yhaA] [GN:yhaA]


[CL:hippurate hydrolase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183009:g2633343] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhaA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [NT:similar to


aminoacylase] [LE:80123] [RE:81313] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19694050_f3_1299
914
4686
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_197090_c2_1776
915
4687
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19709637_c1_1576
916
4688
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19720642_c2_1710
917
4689
1296
431
525
1.7e−50










Description


gp:[GI:e1358508:g3980137] [LN:LMO34616] [AC:AJ007319]


[PN:succinyl-diaminopimelate desuccinylase] [GN:dapE] [OR:Listeria


monocytogenes] [DB:genpept-bct1] [DE:Listeria monocytogenes ascB, inlG,


inlH, inlE, dapE genes.] [LE:5533] [RE:6672] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_197312_c2_1804
918
4690
873
290
813
5.2e−81










Description


sp:[LN:YHDF_BACSU] [AC:O07575] [GN:YHDF] [OR:BACILLUS SUBTILIS] [EC:1.—.—.—]


[DE:(EC 1.—.—.—)] [SP:O07575] [DB:swissprot] >pir:[LN:D69825] [AC:D69825]


[PN:glucose 1-dehydrogenase homolog yhdF] [GN:yhdF] [CL:short-chain alcohol


dehydrogenase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182946:g2633280] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [NT:similar to


glucose 1-dehydrogenase] [SP:O07575] [LE:22211] [RE:23080] [DI:direct]


>gp:[GI:e1191878:g2226201] [LN:BSY14082] [AC:Y14082] [PN:hypothetical


protein] [GN:yhdF] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 72 to 75 degrees:spoVRto sspB.]


[NT:Similarity to glucose and ribitol dehydrogenase] [SP:O07575] [LE:8859]


[RE:9728] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19781305_f1_20
919
4691
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19787788_f3_1311
920
4692
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_19929586_c3_2180
921
4693
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20081538_f1_158
922
4694
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20167186_c2_1958
923
4695
156
51
229
4.0e−19










Description


gp:[GI:g4096799] [LN:SCU40158] [AC:U40158] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus response regulator-like


protein (orfx) gene, partial cds.] [NT:orfx; function unknown; similar to


response] [LE:<1] [RE:560] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20317_c2_1727
924
4696
2088
695
431
8.4e−38










Description


sp:[LN:TAGF_BACSU] [AC:P13485] [GN:TAGF:RODC:TAG3] [OR:BACILLUS SUBTILIS]


[DE:TEICHOIC ACID BIOSYNTHESIS PROTEIN F] [SP:P13485] [DB:swissprot]


>pir:[LN:S06049] [AC:S06049:G69720] [PN:probable CDPglycerol


glycerophosphotransferase, :CDP-glycerol:polyglycerol phosphate


glycero-phosphotransferase tagF:rodC protein:teichoic-acid synthase]


[GN:rodC:tag3:tagF] [OR:Bacillus subtilis] [EC:2.7.8.12] [DB:pir2] [MP:310


degrees] >gp:[GI:g40100] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodC (tag3)


polypeptide (AA 1–746)] [SP:P13485] [LE:2178] [RE:4418] [DI:direct]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [NT:alternate


gene name:rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [NT:alternate


gene name:rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20323403_f3_1320
925
4697
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20335260_c3_2081
926
4698
1881
626
2151
8.6e−223










Description


gp:[GI:g4098081] [LN:LLU73336] [AC:U73336] [PN:anaerobic ribonucleotide


reductase] [GN:nrdD] [OR:Lactococcus lactis] [DB:genpept-bct2]


[DE:Lactococcus lactis anaerobic ribonucleotide reductase (nrdD)


and anaerobic ribonucleotide reductase activator protein (nrdG)


genes, complete cds.] [NT:NrdD] [LE:167] [RE:2410] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20360885_f3_1003
927
4699
1683
560
906
7.3e−91










Description


sp:[LN:YHXB_BACSU] [AC:P18159] [GN:YHXB] [OR:BACILLUS SUBTILIS] [EC:5.4.2.8]


[DE:PROBABLE PHOSPHOMANNOMUTASE, (PMM)] [SP:P18159] [DB:swissprot]


>pir:[LN:C69835] [AC:C69835:D45868:S18566] [PN:phosphomannomutase homolog


yhxB:hypothetical protein (glpD 3′ region)] [GN:yhxB] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182920:g2633254] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yhxB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to phosphomannomutase] [SP:P18159]


[LE:203459] [RE:205156] [DI:direct] >gp:[GI:e1182932:g2633266] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhxB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to phosphomannomutase] [SP:P18159]


[LE:6779] [RE:8476] [DI:direct] >gp:[GI:e324943:g2226139] [LN:BSY14079]


[AC:Y14079] [PN:hypothetical protein] [GN:yhxB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 75 degrees:


glpPFKDoperon and downstream.] [NT:see EMBL M34393 and Swiss Prot P18159.;


This could] [SP:P18159] [LE:6427] [RE:8124] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20410307_f2_684
928
4700
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20413202_f1_47
929
4701
1152
383
961
1.1e−96










Description


sp:[LN:YHAD_ECOLI] [AC:P23524] [GN:YHAD] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 39.1 KD PROTEIN IN RNPB-SOHA INTERGENIC REGION (ORF 3)]


[SP:P23524] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20433135_c3_2142
930
4702
801
266
151
1.4e−10










Description


gp:[GI:d1011987:g1402529] [LN:D78257] [AC:D78257] [PN:ORF8] [GN:orf8]


[OR:Enterococcus faecalis] [SR:Enterococcus faecalis plasmid:pYI17 DNA]


[DB:genpept-bct1] [DE:Enterococcus faecalis plasmid pYI17 genes for BacA,


BacB, ORF3, ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11, partial cds.]


[LE:1899] [RE:2261] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20484386_f2_470
931
4703
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20507625_c3_2004
932
4704
1011
336
244
1.0e−20










Description


gp:[GI:g3127078] [LN:AF061070] [AC:AF061070] [PN:PtxB] [GN:ptxB]


[OR:Pseudomonas stutzeri] [DB:genpept-bct2] [DE:Pseudomonas stutzeri Orf117


(orf117), Orf86 (orf86) genes, complete cds; and ptxABCDE operon, partial


sequence.] [NT:putative binding protein component of] [LE:2345] [RE:3208]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20509637_c3_2110
933
4705
1335
444
311
8.2e−28










Description


gp:[GI:g3676414] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf423] [LE:755] [RE:2026]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20509637_c3_2186
934
4706
1545
514
1655
3.1e−170










Description


sp:[LN:GNTK_BACLI] [AC:P46834] [GN:GNTK] [OR:BACILLUS LICHENIFORMIS]


[EC:2.7.1.12] [DE:GLUCONOKINASE, (GLUCONATE KINASE)] [SP:P46834]


[DB:swissprot] >pir:[LN:JC2304] [AC:JC2304] [PN:gluconate kinase, :gntK


protein] [GN:gntK] [CL:xylulokinase] [OR:Bacillus licheniformis]


[EC:2.7.—.—] [DB:pir2] >gp:[GI:d1007073:g563951] [LN:BACGNTBL] [AC:D31631]


[PN:gluconate kinase] [GN:gntK] [OR:Bacillus licheniformis] [SR:Bacillus


licheniformis (strain:BGSC5A2) DNA] [DB:genpept-bct1] [DE:Bacillus


licheniformis DNA for hypothetical protein and Gnt proteins.] [LE:I725]


[RE:3266] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20515643_f3_1130
935
4707
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20524067_c1_1622
936
4708
639
212
231
2.5e−19










Description


pir:[LN:C70041] [AC:C70041] [PN:conserved hypothetical protein yvgV]


[GN:yvgV] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186036:g2635861]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvgV] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[LE:37577] [RE:38245] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20589568_c1_1392
937
4709
1557
518
282
1.1e−21










Description


sp:[LN:TAGE_BACSU] [AC:P13484] [GN:TAGE:RODD:GTAA] [OR:BACILLUS SUBTILIS]


[EC:2.4.1.52] [DE:(EC 2.4.1.52) (TEICHOIC ACID BIOSYNTHESIS PROTEIN E)]


[SP:P13484] [DB:swissprot] >pir:[LN:S06048] [AC:S06048:F69720]


[PN:poly(glycerol-phosphate) alpha-glucosyltransferase, tagE:probable rodD


protein:UDP-glucose--polyglycerol phosphate glucosyltransferase tagE]


[GN:tagE:rodD] [OR:Bacillus subtilis] [EC:2.4.1.52] [DB:pir2] [MP:310


degrees] >gp:[GI:g580920] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodD (gtaA)


polypeptide (AA 1–673)) [SP:P13484] [LE:157] [RE:2178] [DI:direct]


>gp:[GI:e1184479:g2636099] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:UDP-glucose:polyglycerol phosphate] [GN:tagE] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.4.1.52]


[DE:Bacillus subtilis complete genome (section 19 of 21):from 3597091 to


3809700.] [NT:alternate gene name:rodD, gtaA, gtaD] [SP:P13484] [LE:80369]


[RE:82390] [DI:complement] >gp:[GI:e1184479:g2636099] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-glucose:polyglycerol phosphate] [GN:tagE]


[FN:teichoic acid biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.4.1.52] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:alternate gene name:rodD, gtaA, gtaD] [SP:P13484]


[LE:80369] [RE:82390] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2068937_f3_1191
938
4710
1539
512
1041
3.6e−105










Description


pir:[LN:C69676] [AC:C69676:B39096:S16904:139952:S18269] [PN:alkaline


phosphatase, III precursor:alkaline phosphatase B (phoB)] [GN:phoB:phoAII]


[CL:alkaline phosphatase] [OR:Bacillus subtilis] [EC:3.1.3.1] [DB:pir2]


>gp:[GI:e1182553:g2632887] [LN:BSUB0004] [AC:Z99107:AL009126] [PN:alkaline


phosphatase III] [GN:phoB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:3.1.3.1] [DE:Bacillus subtilis complete genome (section 4 of 21):from


600701 to 813890.] [NT:alternate gene name:phoAIII] [SP:P19405] [LE:19113]


[RE:20501] [DI:complement] >gp:[GI:d1020477:g1945090] [LN:D88802]


[AC:D88802] [GN:phoB] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:B.


subtilis alkaline phosphatase IIIA; P19405] [LE:6115] [RE:7503]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20822287_c1_1574
939
4711
684
227
563
1.6e−54










Description


sp:[LN:GNTR_BACSU] [AC:P10585] [GN:GNTR] [OR:BACILLUS SUBTILIS]


[DE:GLUCONATE OPERON TRANSCRIPTIONAL REPRESSOR (P28 PROTEIN)] [SP:P10585]


[DB:swissprot] >pir:[LN:C26190] [AC:C26190:A23537:E69636:S10723]


[PN:transcription repressor of gluconate operon gntR:gnt operon regulatory


protein] [GN:gntR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1022429:g563933] [LN:AB005554] [AC:AB005554:D45242:D31629]


[PN:gluconate operon repressor] [GN:gntR] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:BGSC 1A1) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA, 36 kb region between gnt and ioloperons.] [NT:PROSITE;


PS00043; HTH_GNTR_FAMILY; see SWISS_PROT] [LE:4516] [RE:5247]


[DI:complement] >gp:[GI:g143014] [LN:BACGNT] [AC:J02584:M24505] [PN:gnt


repressor] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain Marburg 168)


DNA] [DB:genpept-bct1] [DE:B. subtilis (gluconate operon) gntR, gntK and gntP


genes encoding gnt repressor, gluconate kinase and permease, and gntZ gene.]


[LE:236] [RE:967] [DI:direct] >gp:[GI:e1184731:g2636552] [LN:BSUB0021]


[AC:Z99124:AL009126] [PN:transcriptional regulator (GntR family)] [GN:gntR]


[FN:negative regulation of the gluconate operon] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P10585] [LE:113345] [RE:114076] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_20892325_c1_1389
940
4712
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_210885_f2_690
941
4713
222
73










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2125000_f1_305
942
4714
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI75030000985_2136712_c3_2211
943
4715
1197
398
469
1.5e−44










Description


pir:[LN:H69784] [AC:H69784] [PN:chloramphenicol resistance protein homolog


ydhL] [GN:ydhL] [CL:Streptomyces lividans chloramphenicol resistance


protein] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182559:g2632893]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydhL] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [NT:similar to chloramphenicol resistance


protein] [LE:24142] [RE:25419] [DI:complement] >gp:[GI:d1020483:g1945096]


[LN:D88802] [AC:D88802] [GN:ydhL] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:S.


lividans chloramphenicol resistance protein;] [LE:11144] [RE:12421]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_214026_c2_1767
944
4716
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2148428_f2_892
945
4717
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21493827_c2_1719
946
4718
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21515707_f3_1084
947
4719
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21517012_c2_1722
948
4720
411
136
289
1.8e−25










Description


gp:[GI:g2318065] [LN:AF012532] [AC:AF012532] [PN:YeeE] [GN:yeeE]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis strain 168


trpC2 YefA (yefA) gene, partial cds, and YefB (yefB), YefC (yefC), YeeA


(yeeA), YeeB (yeeB), YeeC (yeeC), YeeD (yeeD), YeeE (yeeE) and YeeF (yeeF)


genes, complete cds.] [LE:8308] [RE:9417] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21523377_f3_1042
949
4721
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21563751_f3_1315
950
4722
237
78










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21579561_c2_1962
951
4723
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21604040_c1_1522
952
4724
2028
675
1295
4.4e−132










Description


sp:[LN:FEOB_METJA] [AC:Q57986] [GN:MJ0566] [OR:METHANOCOCCUS JANNASCHII]


[DE:FERROUS IRON TRANSPORT PROTEIN B HOMOLOG] [SP:Q57986] [DB:swissprot]


>pir:[LN:F64370] [AC:F64370] [PN:ferrous iron transport protein B]


[CL:ferrous iron transport protein B:translation elongation factor Tu


homology] [OR:Methanococcus jannaschii] [DB:pir2] [MP:REV504509-502503]


>gp:[GI:g1591272] [LN:U67505] [AC:U67505:L77117] [PN:ferrous iron transport


protein B (feoB)] [GN:MJ0566] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 47 of 150 of the


complete genome.] [NT:similar to SP:P33650 PID:606344 PID:1199515]


[LE:10027] [RE:12033] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21664126_c2_1712
953
4725
1083
360
1138
1.9e−115










Description


gp:[GI:e1299583:g3687417] [LN:BLY17554] [AC:Y17554] [PN:ornithine


carbamoyltransferase] [GN:arcB] [OR:Bacillus licheniformis]


[DB:genpept-bct1] [EC:2.1.3.3] [DE:Bacillus licheniformis arcA, arcB, arcC


and arcD genes.] [LE:1518] [RE:2525] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21674062_c1_1615
954
4726
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21678217_c2_1764
955
4727
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21687963_c1_1426
956
4728
477
158
192
3.4e−15










Description


gp:[GI:g4980875] [LN:AE001717] [AC:AE001717:AE000512] [PN:arginine


repressor] [GN:TM0371] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 29 of 136 of the complete genome.]


[NT:similar to GB:M27869 SP:P17893 PID:142450] [LE:2550] [RE:3008]


[DI:direct] >gp:[GI:e1489641:g5102818] [LN:TMA132286] [AC:AJ132286]


[PN:arginine repressor] [GN:argR] [FN:regulation of arginine biosynthesis


genes] [OR:Thermotoga maritima] [DB:genpept] [DE:Thermotoga maritima argR


gene, strain MSB8.] [LE:1] [RE:459] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21759718_f1_181
957
4729
297
98
76
0.044










Description


gp:[GI:g4049770] [LN:AF063866] [AC:AF063866] [PN:ORF MSV254 leucine rich


repeat gene family] [GN:MSV254] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB genpept-vrl] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:220798] [RE:221799] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_21774087_c3_2111
958
4730
732
243
336
1.8e−30










Description


sp:[LN:Y882_HAEIN] [AC:P44068] [GN:HI0882] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI0882] [SP:P44068] [DB:swissprot] >pir:[LN:E64015]


[AC:E64015] [PN:hypothetical protein HI0882] [OR:Haemophilus influenzae]


[DB:pir2] >gp:[GI:g1573906] [LN:U32770] [AC:U32770:L42023] [PN:H. influenzae


predicted coding region HI0882] [GN:HI0882] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 85 of 163 of the


complete genome.] [NT:hypothetical protein; identified by GeneMark;]


[LE:1177] [RE:1914] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22275052_f1_248
959
4731
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22296927_f1_418
960
4732
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22304578_c2_1792
961
4733
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22345265_f1_27
962
4734
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22380343_f2_827
963
4735
1983
660
363
2.3e−30










Description


sp:[LN:ALYS_ENTFA] [AC:P37710] [OR:ENTEROCOCCUS FAECALIS] [SR:,STREPTOCOCCUS


FAECALIS] [EC:3.5.1.28] [DE:AUTOLYSIN, (N-ACETYLMURAMOYL-L-ALANINE AMIDASE)]


[SP:P37710] [DB:swissprot] >pir:[LN:A38109] [AC:A38109] [PN:autolysin]


[OR:Enterococcus faecalis] [DB:pir2] >gp:[GI:g829194] [LN:STRHYDROLA]


[AC:M58002] [PN:bacterial cell wall hydrolase] [OR:Enterococcus faecalis]


[SR:Streptococcus faecalis DNA] [DB:genpept-bct1] [DE:Streptococcus faecalis


bacterial cell wall hydrolase gene, complete cds.] [LE:536] [RE:2551]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2242136_c3_2048
964
4736
684
227
583
1.2e−56










Description


gp:[GI:e303881:g1850807] [LN:CPCPEAA] [AC:X71844] [PN:putative transposase]


[OR:Clostridium perfringens] [DB:genpept-bct1] [DE:C. perfringens uapC, cpe,


and nadC genes.] [LE:2477] [RE:2932] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22453186_f3_989
965
4737
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22460302_c1_1511
966
4738
756
251
334
3.0e−30










Description


gp:[GI:g2735514] [LN:SCU96108] [AC:U96108] [PN:SceA precursor] [GN:sceA]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


(3R)-hydroxymyristoyl acyl carrier proteindehydrase homolog (fabZ) gene,


partial cds, YwpF homolog, single-strand binding protein homolog (ssb), SceD


precursor (sceD), SceA precursor (sceA) and SceE precursor (sceE) genes,


complete cds, and TenA homolog (tenA) gene, partial cds.] [NT:secreted


protein] [LE:2736] [RE:3449] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22656300_f2_881
967
4739
1542
513
1508
1.2e−154










Description


gp:[GI:d1039113:g4514332] [LN:AB013369] [AC:AB013369] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 yesT and comEC genes, partial and complete


cds.] [NT:unknown] [LE:4328] [RE:5830] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_22735877_f3_1047
968
4740
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23438751_f2_550
969
4741
228
75










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_234432_c1_1440
970
4742
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23445387_c3_1998
971
4743
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23468942_f1_79
972
4744
1101
366
928
3.4e−93










Description


pir:[LN:A69984] [AC:A69984] [PN:endo-1,4-beta-glucanase homolog ysdC]


[GN:ysdC] [CL:thermophilic aminopeptidase I alpha chain] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184131:g2635347] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ysdC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to endo-1,4-beta-glucanase] [LE:154199]


[RE:155284] [DI:complement] >gp:[GI:e1165304:g1770012] [LN:BSZ75208]


[AC:Z75208] [PN:hypothetical protein] [GN:ysdC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic sequence 89009bp.] [NT:homology to


celA of Clostridium thermocellum and] [LE:14623] [RE:15708] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23475251_c2_1952
973
4745
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23475325_c1_1479
974
4746
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23476503_f3_1228
975
4747
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23476702_c1_1496
976
4748
882
293
595
6.6e−58










Description


sp:[LN:YWBI_BACSU] [AC:P39592] [GN:YWBI:IPA-24D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN THIK-EPR INTERGENIC REGION]


[SP:P39592] [DB:swissprot] >pir:[LN:S39679] [AC:S39679:G70051]


[PN:transcription regulator homolog ywbI:protein ipa-24d] [GN:ywbI]


[CL:probable transcription regulator lsyR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g413948] [LN:BSGENR] [AC:X73124] [GN:ipa-24d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39592]


[LE:24460] [RE:25365] [DI:direct] >gp:[GI:e1186330:g2636366] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywbI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:alternate gene name:ipa-24d; similar to]


[SP:P39592] [LE:132594] [RE:133499] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23479702_c3_2053
977
4749
273
90










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23480467_c1_1549
978
4750
912
303
862
3.4e−86










Description


pir:[LN:G69879] [AC:G69879] [PN:L-serine dehydratase homolog ylpA] [GN:ylpA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185177:g2633958] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:ylpA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to L-serine dehydratase] [LE:59909]


[RE:60811] [DI:direct] >gp:[GI:e323528:g2337815] [LN:BSY13937] [AC:Y13937]


[PN:putative YhaP protein] [GN:ylpA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM region.]


[LE:21681] [RE:22583] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_235205_c2_1845
979
4751
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23553275_f3_1064
980
4752
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23556338_c1_1568
981
4753
303
100
170
7.2e−13










Description


Sp:[LN:YCNE_BACSU] [AC:P94425] [GN:YCNE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 10.9 KD PROTEIN IN PHRC-GDH INTERGENIC REGION] [SP:P94425]


[DB:swissprot] >pir:[LN:A69764] [AC:A69764] [PN:conserved hypothetical


protein ycnE] [GN:ycnE] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182354:g2632688] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ycnE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:similar to


hypothetical proteins] [SP:P94425] [LE:36112] [RE:36399] [DI:complement]


>gp:[GI:d1009654:g1805457] [LN:D50453] [AC:D50453] [GN:ycnE] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:118515] [RE:118802] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23593800_c1_1493
982
4754
942
313
141
8.3e−0.8










Description


pir:[LN:D69778] [AC:D69778] [PN:hypothetical protein ydeJ] [GN:ydeJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020110:g1881330] [LN:AB001488]


[AC:AB001488] [GN:ydeJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:FUNCTION


UNKNOWN.] [LE:102509] [RE:103168] [DI:complement] >gp:[GI:e1182488:g2632822]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydeJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [LE:166254] [RE:166913] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23595262_f2_695
983
4755
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23595312_f3_948
984
4756
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23600412_f3_960
985
4757
1242
413
546
1.0e−52










Description


pir:[LN:E69783] [AC:E69783] [PN:bicyclomycin resistance protein homolog


ydgK] [GN:ydgK] [CL:bicyclomycin resistance protein] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1020154:g1881374] [LN:AB001488] [AC:AB001488] [GN:ydgK]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:SIMILAR TO BICYCLOMYCIN RESISTANCE


PROTEIN.] [LE:146860] [RE:148068] [DI:direct] >gp:[GI:e1182547:g2632881]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydgK] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [NT:similar to bicyclomycin resistance


protein] [LE:12656] [RE:13864] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23600752_f1_215
986
4758
240
79
73
0.014










Description


pir:[LN:S69592] [AC:S69592] [PN:hypothetical protein YDR509w]


[OR:Saccharomyces cerevisiae] [DB:pir2] [MP:4R]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23602015_c2_1892
987
4759
687
228
374
1.7e−34










Description


sp:[LN:YBBL_ECOLI] [AC:P77279] [GN:YBBL] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBBL] [SP:P77279]


[DB:swissprot] >pir:[LN:A64780] [AC:A64780] [PN:probable ABC-type transport


protein ybbL:probable ABC transporter, ATP-binding protein ybbL] [GN:ybbL


[CL:ATP-binding cassette homology] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:g1773172] [LN:ECU82664] [AC:U82664] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:Escherichia coli minutes 9 to 11 genomic sequence.]


[NT:hypothetical protein] [LE:95367] [RE:96044] [DI:direct]


>gp:[GI:g1786698] [LN:AE000155] [AC:AE000155:U00096] [PN:putative


ATP-binding component of a transport] [GN:ybbL] [FN:putative transport; Not


classified] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 45 of 400 of the complete genome.] [NT:o225; This 225 aa


ORF is 32 pct identical (7 gaps)] [LE:4439] [RE:5116] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23604052_f1_209
988
4760
318
105
81
0.0020










Description


sp:[LN:YE1A_METJA] [AC:P81328] [GN:MJ1417.1] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ1417.1] [SP:P81328] [DB:swissprot]


>gp:[GI:g2826408] [LN:U67582] [AC:U67582:L77117] [PN:M. jannaschii predicted


coding region MJ1417.1] [GN:MJ1417.1] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 124 of 150 of the


complete genome.] [NT:Brute Force ORF; identified by GeneMark; putative]


[LE:4562] [RE:4999] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23620252_c1_1606
989
4761
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23625005_c3_2103
990
4762
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23631311_c2_1820
991
4763
297
98










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23635926_f2_538
992
4764
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23636343_c1_1383
993
4765
813
270
409
3.4e−38










Description


sp:[LN:PHNE_ECOLI] [AC:P16683:Q47479:P76792:Q47716] [GN:PHNE]


[OR:ESCHERICHIA COLI] [DE:PHOSPHONATES TRANSPORT SYSTEM PERMEASE PROTEIN


PHNE] [SP:P16683:Q47479:P76792:Q47716] [DB:swissprot] >pir:[LN:F35718]


[AC:F35718:A42732:S56332:S56331:G65219:F65219] [PN:phnE


protein:hypothetical protein b4103] [GN:phnE] [CL:phnE protein]


[OR:Escherichia coli] [DB:pir1] >gp:[GI:g247198] [LN:ECOPHNAQ] [AC:J05260]


[OR:Escherichia coli] [SR:E. coli (strain B) DNA] [DB:genpept-bct1]


[DE:E. coli psiD locus containing alkylphosphonate uptake (phn) genes


Athrough Q, complete cds.] [NT:phnE protein] [LE:6227] [RE:7057] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23642942_c3_2087
994
4766
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23649187_c3_2050
995
4767
2637
878
227
9.2e−15










Description


gp:[GI:g4049717] [LN:AF063866] [AC:AF063866] [PN:ORF MSV156 hypothetical


protein] [GN:MSV156] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vrl] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:140126] [RE:143509] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23672518_f3_1031
996
4768
1011
336
529
6.5e−51










Description


pir:[LN:F69659] [AC:F69659] [PN:molybdopterin biosynthesis protein moeB]


[GN:moeB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185017:g2633798]


[LN:BSUB0008] [AC:Z99111:AL009126] [PN:molybdopterin biosynthesis protein]


[GN:moeB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [LE:100770]


[RE:101789] [DI:direct] >gp:[GI:g3282111] [LN:AF012285]


[AC:AF012285:AF012284:U51911] [PN:molybdopterin biosynthesis protein MoeB]


[GN:moeB] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


mobA-nprE gene region.] [NT:member of the moeB/hesA/thiF family; similar to]


[LE:1258] [RE:2277] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23680300_f1_300
997
4769
948
315










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23710811_c1_1425
998
4770
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23828253_f1_81
999
4771
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23866552_f2_815
1000
4772
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_23868887_c2_1828
1001
4773
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24015687_c1_1476
1002
4774
1521
506
2197
1.1e−227










Description


gp:[GI:g4574120] [LN:AF009415] [AC:AF009415] [PN:glycine betaine aldehyde


dehydrogenase] [GN:cudA] [OR:Staphylococcus xylosus] [DB:genpept-bct2]


[DE:Staphylococcus xylosus choline transporter (cudT), putative regulatory


protein (cudC), glycine betaine aldehyde dehydrogenase (cudA), and choline


dehydrogenase (cudB) genes, complete cds.] [NT:CudA] [LE:3363] [RE:4856]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24019026_f1_390
1003
4775
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24022177_c1_1575
1004
4776
1389
462
1499
1.1e−153










Description


sp:[LN:GNTP_BACSU] [AC:P12012] [GN:GNTP] [OR:BACILLUS SUBTILIS]


[DE:GLUCONATE PERMEASE] [SP:P12012] [DB:swissprot] >pir:[LN:A26190]


[AC:A26190:D69636] [PN:gluconate permease gntp] [GN:gntP] [CL:D-serine


permease] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1022427:g563931]


[LN:AB005554] [AC:AB005554:D45242:D31629] [PN:gluconate permease] [GN:gntP]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 36 kb region between


gnt and ioloperons.] [NT:homologs are found in E. coli and H. influenzae;]


[LE:1607] [RE:2953] [DI:complement] >gp:[GI:g143016] [LN:BACGNT]


[AC:J02584:M24505] [PN:permease] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain Marburg 168) DNA] [DB:genpept-bct1] [DE:B. subtilis


(gluconate operon) gntR, gntK and gntP genes encoding gnt repressor,


gluconate kinase and permease, and gntZ gene.] [LE:2530] [RE:3876]


[DI:direct] >gp:[GI:e1184733:g2636554] [LN:BSUB0021] [AC:Z99124:AL009126]


[PN:gluconate permease] [GN:gntP] [FN:gluconate utilization] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


21 of 21):from 3999281 to 4214814.] [SP:P12012] [LE:115639] [RE:116985]


[DI:direct]

























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24070155_f2_878
1005
4777
495
164
280
1.6e-24










Description


pir:[LN:A69849] [AC:A69849] [PN:hypothetical protein yjdF] [GN:yjdF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183223:g2633557] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjdF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:80891] [RE:81373] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24087760_c2_1742
1006
4778
903
300
665
2.5e-65










Description


pir:[LN:F69997] [AC:F69997] [PN:hypothetical protein ytnM] [GN:ytnM]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184177:g2635393] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ytnM] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:202739] [RE:203641] [DI:complement]


>gp:[GI:e1185801:g2635412] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytnM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21):from 2997771 to 3213410.] [LE:99]


[RE:1001] [DI:complement] >gp:[GI:g2293257] [LN:AF008220] [AC:AF008220]


[PN:YtnM] [GN:ytnM] OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [NT:similar to a hypothetical protein]


[LE:179426] [RE:180328] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24095327_c2_1770
1007
4779
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24101701_c1_1485
1008
4780
1542
513
1542
2.9e-158










Description


gp:[GI:d1039113:g4514332] [LN:AB013369] [AC:AB013369] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 yesT and comEC genes, partial and complete


cds.] [NT:unknown] [LE:4328] [RE:5830] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24220260_c3_2109
1009
4781
1056
351
121
0.00034










Description


gp:[GI:e316518:g2230824] [LN:DDSTATFIR] [AC:Y13097] [PN:STAT protein]


[GN:dstA] [FN:regulates stalk cell differentiation] [OR:Dictyostelium


discoideum] [DB:genpept-inv1] [DE:D. discoideum mRNA for stat protein, first


finger stage.] [LE:507] [RE:2630] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24220290_f2_582
1010
4782
1482
493
935
6.2e-94










Description


sp:[LN:ALDA_ECOLI] [AC:P25553] [GN:ALDA:ALD] [OR:ESCHERICHIA COLI]


[EC:1.2.1.22] [DE:ALDEHYDE DEHYDROGENASE A, (LACTALDEHYDE DEHYDROGENASE)]


[SP:P25553] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24224037_c2_1825
1011
4783
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24225015_f3_1098
1012
4784
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24225015_f3_1127
1013
4785
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24226577_c3_2184
1014
4786
834
277
153
9.4e-11










Description


sp:[LN:MERR_BACSR] [AC:P22853] [GN:MERR] [OR:BACILLUS SP] [SR:RC607,]


[DE:MERCURIC RESISTANCE OPERON REGULATORY PROTEIN] [SP:P22853]


[DB:swissprot] >pir:[LN:A32227] [AC:A32227] [PN:hypothetical protein 1 (mer


operon)] [CL:transcription repressor glnR] [OR:Bacillus sp.] [DB:pir2]


>gp:[GI:e301549:g2995399] [LN:BMMERAR2] [AC:Y09907] [PN:regulatory protein]


[GN:merR] [OR:Bacillus megaterium] [DB:genpept-bct1] [DE:Bacillus megaterium


ORF2, ORF3, ORF4, merR and merA genes.] [LE:574] [RE:972] [DI:direct]


>gp:[GI:g1129093] [LN:AF138877] [AC:AF138877:M22708:M22709:AH003258]


[PN:mercury resistance operon negative regulator] [GN:merR1] [OR:Bacillus


sp. RC607] [DB:genpept-bct2] [DE:Bacillus sp. RC607 mercury resistance


operon, complete sequence.] [LE:827] [RE:1225] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24250177_c1_1630
1015
4787
714
237
653
4.7e-64










Description


gp:[GI:e1429599:g4756153] [LN:A67161] [AC:A67161] [FN:NARJ GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:9374] [RE:9949] [DI:direct]


>gp:[GI:g3929524] [LN:AF029224] [AC:AF029224:AF029225] [PN:NarJ] [GN:narJ]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


nitrate reductases NRA] [LE:11559] [RE:12134] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24251251_c2_1868
1016
4788
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24251400_f2_508
1017
4789
792
263
721
2.9e-71










Description


gp:[GI:g1854577] [LN:STALYTS] [AC:L42945] [GN:lytR] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus lytS and lytR genes,


complete cds.] [LE:1849] [RE:2589] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24251635_f3_1143
1018
4790
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24261062_c1_1458
1019
4791
1773
590
1994
3.7e-206










Description


pir:[LN:F70040] [AC:F70040] [PN:sulfite reductase homolog yvgQ] [GN:yvgQ]


[CL:sulfite reductase (ferredoxin)] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186031:g2635856] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvgQ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [NT:similar to


sulfite reductase] [LE:30110] [RE:31825] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24269812_f1_414
1020
4792
627
208
285
4.7e-25










Description


gp:[GI:e1312907:g3355681] [LN:SC1C2] [AC:AL031124] [PN:hypothetical protein


SC1C2.14c] [GN:SC1C2.14c] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 1C2.] [NT:SC1C2.14c, unknown, len:185


aa; similar to] [LE:14959] [RE:15516] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24273375_c2_1749
1021
4793
600
199
789
1.8e-78










Description


gp:[GI:g4574118] [LN:AF009415] [AC:AF009415] [PN:choline transporter]


[GN:cudT] [OR:Staphylococcus xylosus] [DB:genpept-bct2] [DE:Staphylococcus


xylosus choline transporter (cudT), putative regulatory protein (cudC),


glycine betaine aldehyde dehydrogenase (cudA), and choline dehydrogenase


(cudB) genes, complete cds.] [NT:CudT] [LE:811] [RE:2433] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24275187_f2_858
1022
4794
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24303775_f2_444
1023
4795
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24304187_c2_1728
1024
4796
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24304712_f1_311
1025
4797
1674
557
1015
2.1e-102










Description


sp:[LN:DCIP_ENTCL] [AC:P23234] [GN:IPDC] [OR:ENTEROBACTER CLOACAE]


[EC:4.1.1.74] [DE:(DECARBOXYLASE)] [SP:P23234] [DB:swissprot]


>pir:[LN:S16013] [AC:S16013] [PN:indolepyruvate decarboxylase,]


[CL:acetolactate synthase large chain:thiamine pyrophosphate-binding domain


homology] [OR:Enterobacter cloacae] [EC:4.1.1.-] [DB:pir2]


>gp:[GI:d1014947:g216677] [LN:ENTIPDC] [AC:D90214] [OR:Enterobacter cloacae]


[SR:E. cloacae (strain FERM BP-1529) genomic DNA] [DB:genpept-bct1] [DE:E.


cloacae gene for indolepyruvate decarboxylase.] [NT:indolepyruvate


decarboxylase] [LE:31] [RE:1689] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24333286_f2_802
1026
4798
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24337791_c3_2068
1027
4799
1113
370





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24337807_c3_2076
1028
4800
1890
629
1795
4.6e-185










Description


pir:[LN:G70040] [AC:G70040] [PN:sulfite reductase homolog yvgR] [GN:yvgR]


[CL:sulfite reductase (NADPH):flavodoxin homology:NADPH--ferrihemoprotein


reductase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186032:g2635857] [LN:BSUB0018] [AC:Z99121:AL0091261 [GN:yvgR]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [NT:similar to


sulfite reductase] [LE:31851] [RE:33668] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24338217_c2_1747
1029
4801
597
198
372
2.8e-34










Description


gp:[GI:g4098082] [LN:LLU73336] [AC:U73336] [PN:anaerobic ribonucleotide


reductase activator] [GN:nrdG] [OR:Lactococcus lactis] [DB:genpept-bct2]


[DE:Lactococcus lactis anaerobic ribonucleotide reductase (nrdD)


and anaerobic ribonucleotide reductase activator protein (nrdG)


genes, complete cds.] [NT:NrdG] [LE:2413] [RE:3012] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24351562_f3_1230
1030
4802
255
84





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24353390_c2_1882
1031
4803
696
231
421
1.8e-39










Description


pir:[LN:S76993] [AC:S76993] [PN:hypothetical protein] [CL:ribitol


dehydrogenase:short-chain alcohol dehydrogenase homology] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803, ] [DB:pir2]


>gp:[GI:d1011336:g1001805] [LN:SYCSLRG] [AC:D64005:AB001339]


[PN:hypothetical protein] [OR:Synechocystis sp.] [SR:Synechocystis sp.


(strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 24/27, 3002966–3138603.] [NT:ORF_ID:slr0315] [LE:34344]


[RE:35078] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24353392_c2_1954
1032
4804
2409
802
3358
0.0










Description


gp:[GI:e1429587:g4756149] [LN:A67161] [AC:A67161] [FN:NIRB GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:181] [RE:2586] [DI:direct]


>gp:[GI:g4433639] [LN:AF029224] [AC:AF029224:AF029225] [PN:NirB] [GN:nirB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


NADH-dependent nitrite] [LE:2366] [RE:4771] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24406542_f3_1293
1033
4805
339
112
513
3.2e-49










Description


gp:[GI:g2914128] [LN:SEU43366] [AC:U43366] [PN:IcaD] [GN:icaD]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis operon mediating intercellular adhesion:IcaR, IcaA, IcaD, IcaB,


and IcaC genes, complete cds.] [LE:1963] [RE:2268] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24406952_c1_1434
1034
4806
447
148
188
8.9e-15










Description


sp:[LN:PETP_RHOCA] [AC:P31078] [GN:PETP] [OR:RHODOBACTER CAPSULATUS]


[SR:,RHODOPSEUDOMONAS CAPSULATA] [DE:PETP PROTEIN] [SP:P31078]


[DB:swissprot] >pir:[LN:S22631] [AC:S22631:S21001] [PN:petP protein]


[GN:petP] [OR:Rhodobacter capsulatus] [DB:pir2] >gp:[GI:e49248:g1333802]


[LN:RCPETPR] [AC:Z12113:S42067] [PN:protein of unknown function] [GN:petP]


[OR:Rhodobacter capsulatus] [DB:genpept-bct1] [DE:R. capsulatus petP, petR,


and fbcF genes.] [NT:part of the petPR operon in front of fbc operon]


[SP:P31078] [LE:199] [RE:699] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24415887_c2_1761
1035
4807
927
308
123
2.7e-05










Description


gp:[GI:g3955198] [LN:AF022796] [AC:AF022796] [PN:ModA] [GN:modA]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:molybdate-binding lipoprotein of the] [LE:109] [RE:894] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24416068_c1_1624
1036
4808
549
182
528
8.3e-51










Description


pir:[LN:C69996] [AC:C69996] [PN:conserved hypothetical protein ytmI]


[GN:ytmI] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184188:g2635404]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:ytmI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21):from 2795131 to 3013540.] [NT:similar to hypothetical proteins


from B. subtilis] [LE:212192] [RE:212728] [DI:complement]


>gp:[GI:e1185812:g2635423] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytmI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21):from 2997771 to 3213410.] [NT:similar to


hypothetical proteins from B. subtilis] [LE:9552] [RE:10088] [DI:complement]


>gp:[GI:g2293246] [LN:AF008220] [AC:AF008220] [PN:YtmI] [GN:ytmI]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similar to a hypothetical 19 kD protein from B.]


[LE:170339] [RE:170875] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24421937_c3_1999
1037
4809
1269
422
778
2.7e-77










Description


pir:[LN:B69801] [AC:B69801] [PN:chloramphenicol resistance protein homolog


yfhI] [GN:yfhI] [CL:Streptomyces lividans chloramphenicol resistance


protein] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182844:g2633178]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfhI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21):from 802821 to 1011250.] [NT:similar to antibiotic resistance


protein] [LE:123573] [RE:124766] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24429663_c1_1444
1038
4810
933
310
326
2.1e-29










Description


sp:[LN:YXDK_BACSU] [AC:P42422] [GN:YXDK:B65E] [OR:BACILLUS SUBTILIS]


[EC:2.7.3.-] [DE:(EC 2.7.3.-)] [SP:P42422] [DB:swissprot] >pir:[LN:H70073]


[AC:H70073] [PN:two-component sensor histidine kinase homolog yxdK]


[GN:yxdK] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1003811:g709992]


[LN:BACIOLO] [AC:D14399] [PN:hypothetical protein] [GN:B65E] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (168 trpC2)) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis 15 kb chromosome segment contains


the iol operon.] [NT:homologous to sensor protein BVgC, His protein]


[LE:11893] [RE:12870] [DI:direct] >gp:[GI:e1184690:g2636511] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yxdK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:similar to two-component sensor histidine


kinase] [SP:P42422] [LE:70819] [RE:71796] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24432327_c2_1777
1039
4811
1665
554
1633
6.7e-168










Description


gp:[GI:g473902] [LN:LACALS] [AC:L16975] [PN:alpha-acetolactate synthase]


[GN:als] [OR:Lactococcus lactis] [SR:Lactococcus lactis (strain DSM 20384,


sub_species lactis) DNA] [DB:genpept-bct1] [DE:Lactococcus lactis


alpha-acetolactate synthase (als) gene, complete cds.] [LE:1232] [RE:2896]


[DI:direct] >gp:[GI:g809618] [LN:A23961] [AC:A23961] [PN:alpha-acetolactate


synthase] [OR:Lactococcus lactis] [DB:genpept-pat] [DE:L. lactis


alpha-acetolactate synthase gene.] [LE:550] [RE:2214] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24500300_c1_1462
1040
4812
1206
401
1208
7.3e-123










Description


pir:[LN:B69877] [AC:B69877] [PN:sulfate adenylyltransferase homolog ylnB]


[GN:ylnB] [CL:Synechocystis sulfate adenylyltransferase:sulfate


adenylyltransferase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e332185:g2462958] [LN:BSPYREYLO] [AC:AJ000974] [PN:putative sulfate


adenylyltransferase] [GN:ylnB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis pyrE to yloA gene region.] [LE:2374] [RE:3522]


[DI:direct] >gp:[GI:e1185151:g2633932] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:ylnB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to sulfate adenylyltransferase] [LE:33187] [RE:34335]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_245443_c1_1548
1041
4813
696
231
375
1.4e-34










Description


pir:[LN:F69879] [AC:F69879] [PN:phosphoglycerate dehydrogenase homolog


yloW] [GN:yloW] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185176:g2633957]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:yloW] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to phosphoglycerate


dehydrogenase] [LE:59221] [RE:59883] [DI:direct] >gp:[GI:e323511:g2337814]


[LN:BSY13937] [AC:Y13937] [PN:putative YhaQ protein] [GN:yloW] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA


from the spoVM region.] [LE:20993] [RE:21655] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24611567_c2_1831
1042
4814
1074
357
478
1.7e-45










Description


pir:[LN:S36209] [AC:S36209] [PN:dep protein precursor] [GN:dep]


[OR:Bacillus anthracis] [DB:pir2] >gp:[GI:d1003632:g436034] [LN:BACDEP]


[AC:D14037] [PN:ORF] [GN:dep] [OR:Bacillus anthracis] [SR:Bacillus anthracis


(strain:Davis) plasmid:pTE702 DNA] [DB:genpept-bct1] [DE:Bacillus anthracis


plasmid pTE702 dep gene for ORF, complete cds.] [LE:252] [RE:1652]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24617025_c1_1339
1043
4815
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24617262_c1_1501
1044
4816
825
274
690
5.7e-68










Description


sp:[LN:PANB_BACSU] [AC:P52996] [GN:PANB] [OR:BACILLUS SUBTILIS]


[EC:2.1.2.11] [DE:(KETOPANTOATE HYDROXYMETHYLTRANSFERASE)] [SP:P52996]


[DB:swissprot] >pir:[LN:G69671] [AC:G69671] [PN:ketopantoate


hydroxymethyltransferase panB] [GN:panB] [CL:3-methyl-2-oxobutanoate


hydroxymethyltransferase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1146240]


[LN:BACYPIA] [AC:L47709] [PN:ketopantoate hydroxymethyltransferase]


[GN:panB] [FN:pantothenic acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.1.2.11] [DE:Bacillus subtilis (clone YAC15-6B)


ypiABF genes, qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG


gene, ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene,


complete cds's.] [NT:47.1% of identity to the 3-methyl-2-oxobutanoate]


[LE:13293] [RE:14126] [DI:direct] >gp:[GI:e1183688:g2634661] [LN:BSUB0012]


[AC:Z99115:AL009126] [PN:ketopantoate hydroxymethyltransferase] [GN:panB]


[FN:pantothenate biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.1.2.11] [DE:Bacillus subtilis complete genome (section 12 of 21):from


2195541 to 2409220.] [SP:P52996] [LE:157541] [RE:158374] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24640910_c2_1654
1045
4817
519
172





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24641932_c2_1734
1046
4818
672
223
500
7.7e-48










Description


gp:[GI:g4104595] [LN:AF036964] [AC:AF036964] [PN:putative response


regulator] [GN:rrp1] [OR:Lactobacillus sakei] [DB:genpept-bct2]


[DE:Lactobacillus sake putative response regulator (rrp1) and


putative histidine kinase (hpk1) genes, complete cds.] [NT:Rrp1; member of a


two-component regulatory system] [LE:2112] [RE:2786] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24643930_c3_2138
1047
4819
696
231
399
3.9e-37










Description


sp:[LN:YOHK_ECOLI] [AC:P33373] [GN:YOHK] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 24.5 KD PROTEIN IN PBPG-CDD INTERGENIC REGION] [SP:P33373]


[DB:swissprot] >pir:[LN:E64982] [AC:E64982] [PN:yohK protein] [GN:yohK]


[CL:yohK protein] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g1788464]


[LN:AE000303] [AC:AE000303:U00096] [PN:putative seritonin transporter]


[GN:yohK] [FN:putative transport; Not classified] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 193 of 400 of the


complete genome.] [NT:o231; residues 10295 are 100 pct identical to]


[LE:6088] [RE:6783] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24646963_c3_2072
1048
4820
1350
449
1703
2.6e-175










Description


gp:[GI:e315090:g2791905] [LN:SSK3MECA1] [AC:Y13052] [GN:ORF454]


[OR:Staphylococcus sciuri] [DB:genpept-bct1] [DE:S. sciuri mecA1 gene, strain


K3(MM2).] [LE:4208] [RE:5572] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24648377_c3_2261
1049
4821
1146
381
1301
1.0e-132










Description


gp:[GI:e1429613:g4756156] [LN:A67169] [AC:A67169] [PN:NART GENE] [FN:NITRATE


TRANSPORT] [OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 9 from


Patent EP0805205.] [LE:538] [RE:1704] [DI:direct] >gp:[GI:g2529402]


[LN:SCU40014] [AC:U40014] [PN:nitrate transporter] [GN:narT]


[OR:Staphylococcus carnosus] [SR:Staphylococcus carnosus strain = TM300]


[DB:genpept-bct2] [DE:Staphylococcus carnosus nitrate transporter (narT)


gene, complete cds.] [NT:NarT] [LE:90] [RE:1256] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24648502_c3_2088
1050
4822
468
155
228
5.1e-19










Description


sp:[LN:YHGC_BACSU] [AC:P380491] [GN:YHGC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 18.8 KD PROTEIN IN ECSC-PBPF INTERGENIC REGION] [SP:P38049]


[DB:swissprot] > pir:[LN:B40614] [AC:B40614:F69832] [PN:conserved


hypothetical protein yhgC:hypothetical protein X (pbpF 5′ region)] [GN:yhgC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g304160] [LN:BACPBPF] [AC:L10630]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain W168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis penicillin-binding protein (pbpF)


gene, 5′ end.] [NT:product unknown] [LE:247] [RE:747] [DI:complement]


>gp:[GI:e1183012:g2633346] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhgC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [NT:alternate


gene name:yixC; similar to hypothetical] [SP:P38049] [LE:83202] [RE:83702]


[DI:complement] >gp:[GI:e325006:g2226228] [LN:BSY14083] [AC:Y14083]


[PN:Hypothetical protein] [GN:yixC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 76–78 degrees:


between glyB–aprE.] [NT:See Swiss Prot P38049; YIXC_BACSU] [SP:P38049]


[LE:3061] [RE:3561] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24648551_f2_791
1051
4823
174
57
108
6.6e-06










Description


gp:[GI:g1022725] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp:[GI:g295162] [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) gene and unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24652312_f1_419
1052
4824
1617
538
1137
2.4e-115










Description


gp:[GI:g4835822] [LN:AF102174] [AC:AF102174] [PN:glycine betaine transporter


BetL] [GN:betL] [OR:Listeria monocytogenes] [DB:genpept-bct2] [DE:Listeria


monocytogenes glycine betaine transporter BetL (betL) gene, complete cds.]


[LE:209] [RE:1732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24665957_c3_2149
1053
4825
1494
497
1335
2.5e-136










Description


sp:[LN:XYLB_BACSU] [AC:P39211] [GN:XYLB] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.17] [DE:XYLULOSE KINASE, (XYLULOKINASE)] [SP:P39211]


[DB:swissprot] >pir:[LN:D69735] [AC:D69735] [PN:xylulose kinase xylB]


[GN:xylB] [CL:xylulokinase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1750125] [LN:BSU66480] [AC:U66480] [PN:xylulose kinase] [GN:xylB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis SpoVK


(spoVK), YnbA (ynbA), YnbB (ynbB), GlnR (glnR), glutamine synthetase (glnA),


YnaA (ynaA), YnaB (ynaB), YnaC (ynaC), YnaD (ynaD), YnaE (ynaE), YnaF (ynaF),


YnaG (ynaG), YnaH (ynaH), YnaI (ynaI), YnaJ (ynaJ), xylan beta-1,4-xylosidase


(xynB), xylose repressor (xylR), xylose isomerase (xylA), xylulose


kinase (xylB), YncB (yncB), YncC (yncC), YncD (yncD) and YncE (yncE) genes,


complete cds.] [LE:19399] [RE:20898] [DI:direct] >gp:[GI:e1183420:g2634145]


[LN:BSUB0010] [AC:Z99113:AL009126] [PN:xylulose kinase] [GN:xylB] [FN:xylose


metabolism] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.1.17]


[DE:Bacillus subtilis complete genome (section 10 of 21):from 1781201 to


2014980.] [NT:alternate gene name:yncA] [SP:P39211] [LE:111450] [RE:112949]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24720257_f1_131
1054
4826
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24722175_c1_1538
1055
4827
1101
366
353
2.9e-32










Description


pir:[LN:H70069] [AC:H70069] [PN:capsular polyglutamate biosynthesis homolog


ywtB] [GN:ywtB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184494:g2636113]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywtB] [FN:unknown] [OR:Baciilus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21):from 3597091 to 3809700.] [NT:similar to capsular polyglutamate


biosynthesis] [LE:99788] [RE:100930] [DI:complement]


>gp:[GI:e308090:g1894767] [LN:BSZ92954] [AC:Z92954] [GN:ywtB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis yws [A, B, C, D, E, F, G] and gerBC


genes.] [NT:product highly similar to Bacillus anthracis CapA] [LE:1552]


[RE:2694] [DI:direct] >gp:[GI:e1184494:g2636113] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywtB] [FN:unknown] [OR:Bacilius subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:similar to capsular polyglutamate biosynthesis]


[LE:99788] [RE:100930] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24730438_c2_1833
1056
4828
420
139
374
1.7e-34










Description


gp:[GI:g4959403] [LN:AF115391] [AC:AF115391] [PN:ribose permease RbsD]


[GN:rbsD] [OR:Lactobacillus sakei] [DB:genpept-bct2] [DE:Lactobacillus sakei


LaaA (laaA) gene, partial cds; LaaB (laaB), putative acetate kinase AckA


(ackA), LaaC (laaC) genes, complete cds; rbs operon, complete sequence; and


LaaE (laaE) gene, partial cds.] [LE:4035] [RE:4430] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24797140_c2_1871
1057
4829
900
299
145
7.3e-08










Description


sp:[LN:ESTE_PSEFL] [AC:P22862] [OR:PSEUDOMONAS FLUORESCENS] [EC:3.1.1.2]


[DE:ARYLESTERASE, (ARYL-ESTER HYDROLASE)] [SP:P22862] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24797900_c1_1361
1058
4830
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24812502_c1_1521
1059
4831
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24814838_c2_1789
1060
4832
870
289
350
6.1e-32










Description


pir:[LN:S76790] [AC:S76790] [PN:hypothetical protein] [CL:hypothetical


protein b1725] [OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC


6803, ] [DB:pir2] >gp:[GI:d1019435:g1653791] [LN:D90916]


[AC:D90916:AB001339] [PN:hypothetical protein] [OR:Synechocystis sp.]


[SR:Synechocystis sp. (strain:PCC6803) DNA] [DB:genpept-bct1]


[DE:Synechocystis sp. PCC6803 complete genome, 26/27, 3270710–3418851.]


[NT:ORF_ID:s1r1563] [LE:99350] [RE:100237] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24817202_c1_1512
1061
4833
1809
602
799
2.3e-116










Description


pir:[LN:C69975] [AC:C69975] [PN:acyltransferase homolog yrhL] [GN:yrhL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1934616] [LN:BSU93874] [AC:U93874]


[PN:hypothetical protein YrhL] [GN:yrhL] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis cysteine synthase (yrhA),


cystathioninegamma-lyase (yrhB), YrhC (yrhC), YrhD (yrhD), formate


dehydrogenasechain A (yrhE), YrhF (yrhF), formate dehydrogenase (yrhG),


YrhH (yrhH), regulatory protein (yrhI), cytochrome P450 102 (yrhJ),


YrhK (yrhK), hypothetical protein YrhL (yrhL), putative anti-SigV


factor (yrhM), RNA polymerase sigma factor SigV (sigV) and YrhO (yrhO) genes,


complete cds, and YrhP (yrhP) gene, partial cds.] [NT:similar to Haemophilus


influenzae hypothetical] [LE:13904] [RE:15808] [DI:complement]


>gp:[GI:e1183944:g2635160] [LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrhL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 14 of 21):from 2599451 to 2812870.] [NT:similar to


acyltransferase] [LE:171138] [RE:173042] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_24855337_c2_1957
1062
4834
693
230
1003
3.8e-101










Description


gp:[GI:e1429602:g4756154] [LN:A67161] [AC:A67161] [FN:NARI GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:9942] [RE:10625] [DI:direct]


>gp:[GI:g3929525] [LN:AF029224] [AC:AF029224:AF029225] [PN:NarI] [GN:narI]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


nitrate reductases NRA] [LE:12127] [RE:12810] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_250178_c3_2162
1063
4835
234
77
82
0.0015










Description


pir:[LN:E70557] [AC:E70557] [PN:hypothetical protein Rv1615] [GN:Rv1615]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e316881:g2113899]


[LN:MTCY01B2] [AC:Z95554:AL123456] [PN:hypothetical protein Rv1615]


[GN:Rv1615] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 72/162.]


[NT:Rv1615, (MTCY01B2.07), len:146. Function:unknown] [LE:7451] [RE:7891]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2507950_f1_199
1064
4836
216
71





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_251_f1_433
1065
4837
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25398426_f1_211
1066
4838
198
65





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25413577_f3_1032
1067
4839
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25429700_c2_1683
1068
4840
1356
451
158
1.8e-08










Description


gp:[GI:e332306:g2462111] [LN:BCY11138] [AC:Y11138] [GN:ORF1] [OR:Bacillus


cereus] [DB:genpept-bct1] [DE:B. cereus DNA for ORF1, ORF2 and ORF3 (2402


bp).] [NT:shows weak homology to C. elegans cosmid C33A12 ORF] [LE:156]


[RE:1373] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25431558_f1_63
1069
4841
705
234
855
1.9e-85










Description


gp:[GI:g1575026] [LN:SAU52961] [AC:U52961] [PN:LrgB] [GN:lrgB]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus strain = NCTC 8325-4]


[DB:genpept-bct2] [DE:Staphylococcus aureus holin-like protein LrgA (lrgA)


and LrgB (lrgB) genes, complete cds.] [NT:LytSR-regulated gene; similar to


E. coli yohK] [LE:805] [RE:1506] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25433452_f1_61
1070
4842
1791
596
1867
1.1e-192










Description


gp:[GI:g862312] [LN:STALYTS] [AC:L42945] [GN:lytS] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus lytS and lytR genes,


complete cds.] [LE:92] [RE:1846] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25570262_f1_358
1071
4843
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25578215_c2_1740
1072
4844
543
180
483
4.9e-46










Description


gp:[GI:e316582:g2791909] [LN:SSK11MECA] [AC:Y13094] [GN:ORF141]


[OR:Staphylococcus sciuri] [DB:genpept-bct1] [DE:S. sciuri mecA gene, strain


K11 (792).] [LE:4489] [RE:4914] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2557962_f2_698
1073
4845
1377
458
953
7.7e-96










Description


sp:[LN:NAOX_ENTFA] [AC:P37061] [GN:NOX] [OR:ENTEROCOCCUS FAECALIS]


[SR:,STREPTOCOCCUS FAECALIS] [EC:1.6.99.3] [DE:NADH OXIDASE, (NOXASE)]


[SP:P37061] [DB:swissprot] >pir:[LN:S26965] [AC:S26965] [PN:NADH oxidase]


[CL:NADH peroxidase] [OR:Enterococcus faecalis] [DB:pir2] >gp:[GI:g47045]


[LN:SFNOXAA] [AC:X68847:S45681] [PN:NADH oxidase] [GN:nox] [OR:Enterococcus


faecalis] [DB:genpept-bct1] [DE:S. faecalis nox gene for NADH oxidase.]


[SP:P37061] [LE:88] [RE:1428] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25580425_f1_74
1074
4846
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25585932_c1_1598
1075
4847
276
91
254
9.0e-22










Description


gp:[GI:d1039105:g4514322] [LN:AB013367] [AC:AB013367] [PN:YdeI] [GN:ydeI]


[OR:Bacillus halodurans] [SR:Bacillus halodurans (strain:C-125) DNA]


[DB:genpept-bct1] [DE:Bacillus halodurans C-125 ydeI gene, complete cds.]


[LE:276] [RE:869] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25600015_c3_2090
1076
4848
1632
543
1561
2.9e-160










Description


pir:[LN:E69989] [AC:E69989] [PN:acetate--CoA ligase, ytcI] [GN:ytcI]


[CL:acetate--CoA ligase homology] [OR:Bacillus subtilis] [EC:6.2.1.1]


[DB:pir2] >gp:[GI:e1185829:g2635440] [LN:BSUB0016] [AC:Z99119:AL009126]


[GN:ytcI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 16 of 21):from 2997771 to 3213410.]


[NT:similar to acetate-CoA ligase] [LE:24979] [RE:26574] [DI:complement]


>gp:[GI:g2293232] [LN:AF008220] [AC:AF008220] [PN:YtcI] [GN:ytcI]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:putative acetate CoA-ligase] [LE:153853] [RE:155448]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25626875_f2_653
1077
4849
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25666427_f3_1335
1078
4850
306
101
84
0.0061










Description


sp:[LN:SSUA_BACSU] [AC:P40400] [GN:SSUA] [OR:BACILLUS SUBTILIS] [DE:PUTATIVE


ALIPHATIC SULFONATES BINDING PROTEIN PRECURSOR] [SP:P40400] [DB:swissprot]


>pir:[LN:I39927] [AC:I39927:C69817] [PN:ABC transporter (binding


lipoprotein) homolog ygbA] [GN:ygbA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g438472] [LN:BACORFKLM] [AC:L16808] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (individual_isolate MS11) (library:Tn91]


[DB:genpept-bct1] [DE:Bacillus subtilis orfK, orfL and orfM, complete


cds's.] [NT:Likely N-terminal signal sequence, followed by] [LE:69]


[RE:1067] [DI:direct] >gp:[GI:e1182873:g2633207] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:ygbA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:alternate gene name:yzeA; similar to ABC]


[SP:P40400] [LE:158868] [RE:159866] [DI:direct] >gp:[GI:e308630:g1903039]


[LN:BSZ93102] [AC:Z931021] [PN:hypothetical 36.3 kd lipoprotein precursor]


[GN:yzeA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


yga [L, M, N, O, P, Q, R, S, T], yzdB and yze [A, C] genes.] [NT:homology to nitrate


transport protein precursor] [SP:P40400] [LE:1194] [RE:2192] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25961087_f1_123
1079
4851
813
270
399
3.9e-37










Description


sp:[LN:YFIE_BACSU] [AC:P54721] [GN:YFIE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.5 KD PROTEIN IN GLVBC 3′ REGION] [SP:P54721]


[DB:swissprot] >pir:[LN:H69802] [AC:H69802] [PN:conserved hypothetical


protein yfiE] [GN:yfiE] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182814:g2633148] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfiE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21):from 802821 to 1011250.] [NT:similar to


hypothetical proteins from B. subtilis] [SP:P54721] [LE:94696] [RE:95553]


[DI:direct] >gp:[GI:d1009744:g1486247] [LN:D50543] [AC:D50543] [PN:unknown]


[GN:yfiE] [FN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168, haplotype:haploid) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA for 76-degree region, complete cds.] [LE:8372] [RE:9229] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_25970952_f1_316
1080
4852
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26017278_c1_1441
1081
4853
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26179777_c1_1558
1082
4854
1818
605
522
3.6e-50










Description


pir:[LN:S75742] [AC:S75742] [PN:hypothetical protein s110556]


[OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1011128:g1001236] [LN:SYCSLLE] [AC:D64003:AB001339]


[PN:hypothetical protein] [OR:Synechocystis sp.] [SR:Synechocystis sp.


(strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 22/27, 2755703–2868766.] [NT:ORF_ID:s110556] [LE:45438]


[RE:47333] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26188837_c1_1601
1083
4855
975
324
838
1.2e-83










Description


pir:[LN:A69670] [AC:A69670] [PN:choline ABC transporter (choline-binding


protein) opuBC] [GN:opuBC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186059:g2635884] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:choline


ABC transporter (choline-binding] [GN:opuBC] [FN:high affinity transport of


choline] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [NT:alternate


gene name:prox] [LE:60016] [RE:60936] [DI:complement] >gp:[GI:g2293449]


[LN:AF008930] [AC:AF008930] [PN:choline binding protein precursor]


[GN:opuBC] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


choline transport system including ATPase (opuBA), transmembrane protein


(opuBB), choline binding protein precursor (opuBC) and transmembrane protein


(opuBD) genes, complete cds; and unknown gene.] [NT:part of choline uptake


system; OpuBC; lipoprotein] [LE:2708] [RE:3628] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26207537_f3_1201
1084
4856
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26213885_c3_2215
1085
4857
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26220077_f3_445
1086
4858
447
148
259
2.7e-22










Description


pir:[LN:E69857] [AC:E69857] [PN:conserved hypothetical protein ykmA]


[GN:ykmA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181515:g2632035]


[LN:BSAJ2571] [AC:AJ002571] [PN:YkmA] [GN:ykmA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment


between xlyA and ykoR.] [LE:33559] [RE:34002] [DI:complement]


>gp:[GI:e1183335:g2633669] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykmA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to


hypothetical proteins] [LE:186508] [RE:186951] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26353411_c1_1391
1087
4859
576
191





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26380265_c3_2042
1088
4860
1263
420
1291
1.2e-131










Description


gp:[GI:e1299582:g3687416] [LN:BLY17554] [AC:Y17554] [PN:arginine deiminase]


[GN:arcA] [OR:Bacillus licheniformis] [DB:genpept-bct1] [EC:3.5.3.6]


[DE:Bacillus licheniformis arcA, arcB, arcC and arcD genes.] [LE:248]


[RE:1489] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26383512_c1_1506
1089
4861
1398
465
1195
1.7e-121










Description


sp:[LN:YDGF_BACSU] [AC:P96704] [GN:YDGF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSPORT PROTEIN IN EXPZ-DINB INTERGENIC REGION]


[SP:P96704] [DB:swissprot] >pir:[LN:H69782] [AC:H69782] [PN:amino acid ABC


transporter (permease) homolog ydgF] [GN:ydgF] [CL:arginine permease]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020148:g1881368] [LN:AB001488]


[AC:AB001488] [GN:ydgF] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:PROBABLE AMINO


ACID TRANSPORT PERMIASE.] [LE:139917] [RE:141293] [DI:complement]


>gp:[GI:e1182528:g2632862] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydgF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:similar to


amino acid ABC transporter (permease)] [SP:P96704] [LE:203663] [RE:205039]


[DI:complement] >gp:[GI:e1182541:g2632875] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:ydgF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:similar to amino acid ABC transporter (permease)]


[SP:P96704] [LE:5713] [RE:7089] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26385928_f2_900
1090
4862
1437
478
1441
1.5e-147










Description


pir:[LN:F69811] [AC:F69811] [PN:2-oxoglutarate/malate translocator homolog


yflS] [GN:yflS] [CL:2-oxoglutarate/malate translocator] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182747:g2633081] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yflS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to 2-oxoglutarate/malate translocator]


[LE:26070] [RE:27506] [DI:direct] >gp:[GI:d1023175:g2443241] [LN:D86417]


[AC:D86417] [PN:YflS] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb genomic


DNA, 70–73 degree region, complete cds.] [LE:21015] [RE:22451]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26429800_f2_605
1091
4863
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26449187_c1_1436
1092
4864
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26571937_f2_570
1093
4865
789
262
838
1.2e-83










Description


pir:[LN:D69845] [AC:D69845] [PN:thiamin biosynthesis homolog yjbT] [GN:yjbT]


[CL:thiamine biosynthesis protein thiG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183189:g2633523] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:yjbT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to


thiamin biosynthesis] [LE:50122] [RE:50892] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26595641_f2_572
1094
4866
621
206
416
6.1e-39










Description


sp:[LN:APL_LACLA] [AC:Q48630] [GN:APL] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [DE:ALKALINE PHOSPHATASE LIKE


PROTEIN] [SP:Q48630] [DB:swissprot] >pir:[LN:S39339] [AC:539339]


[PN:alkaline phosphatase-like protein] [CL:probable alkaline phosphatase


yngC] [OR:Lactococcus lactis] [DB:pir2] >gp:[GI:g435296] [LN:LLALPHLP]


[AC:Z29065] [PN:alkaline phosphatase like protein] [GN:apl] [OR:Lactococcus


lactis] [DB:genpept-bct1] [DE:L. lactis (MG1363) apl gene for alkaline


phosphatase like protein.] [SP:Q48630] [LE:339] [RE:1067] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26600425_f3_1300
1095
4867
792
263
220
3.6e-18










Description


sp:[LN:ARY1_MOUSE] [AC:P50294] [GN:AAC1:NAT1] [OR:MUS MUSCULUS] [SR:,MOUSE]


[EC:2.3.1.5] [DE:ARYLANINE N-ACETYLTRANSFERASE 1, (NAT-1)] [SP:P50294]


[DB:swissprot] >gp:[GI:g1045651] [LN:MMNAT1] [AC:U37119] [PN:arylamine


N-acetyltransferase] [GN:NAT1] [OR:Mus musculus] [SR:house mouse


strain = C3H/HeJ] [DB:genpept-rod] [DE:Mus musculus arylamine


N-acetyltransferase (NAT1) gene, complete cds.] [LE:1] [RE:873] [DI:direct]


>gp:[GI:g1008568] [LN:MMU35885] [AC:U35885] [PN:N-acetyltransferase NAT-1]


[OR:Mus musculus] [SR:house mouse strain = C57B16] [DB:genpept-rod] [DE:Mus


musculus N-acetyltransferase NAT-1 mRNA, complete cds.] [LE:217] [RE:1089]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26605001_c3_2206
1096
4868
825
274
686
1.5e-67










Description


sp:[LN:YXBG_BACSU] [AC:P46331] [GN:YXBG:E3BR] [OR:BACILLUS SUBTILIS]


[EC:1.-.-.-] [DE:(EC 1.-.-.-)] [SP:P46331] [DB:swissprot] >pir:[LN:B70073]


[AC:B70073] [PN:glucose 1-dehydrogenase homolog yxbG] [GN:yxbG]


[CL:short-chain alcohol dehydrogenase homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1022451:g904199] [LN:AB005554]


[AC:AB005554:D45242:D31629] [PN:probable oxidoreductase] [GN:yxbG]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1) DNA]


[DB:genpept-bct1] [EC:1.1.1.47] [DE:Bacillus subtilis genomic DNA, 36 kb


region between gnt and iol operons.] [NT:conserved universally] [LE:26446]


[RE:27234] [DI:complement] >gp:[GI:e1184709:g2636530] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yxbG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:alternate gene name:yxaU; similar to glucose]


[SP:P46331] [LE:91359] [RE:92147] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26672512_c1_1554
1097
4869
192
63
48
0.048










Description


gp:[GI:g2444136] [LN:U88974] [AC:U88974] [PN:ORF56] [OR:Streptococcus


thermophilus temperate bacteriophage O1205] [DB:genpept-phg]


[DE:Streptococcus thermophilus temperate bacteriophage O1205,


complete genome.] [LE:42158] [RE:42484] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_266877_f2_877
1098
4870
450
149
285
4.7e-25










Description


pir:[LN:F69653] [AC:F69653] [PN:transcription regulator lrpC] [GN:lrpC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182391:g2632725] [LN:BSUB0003]


[AC:Z99106:AL009126] [PN:transcriptional regulator (Lrp/AsnC family)]


[GN:lrpC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:alternate gene


name:ydaI] [LE:72862] [RE:73296] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26751431_c3_1973
1099
4871
1062
353
1037
9.6e-105










Description


pir:[LN:E69581] [AC:E69581] [PN:acetoin dehydrogenase E1 component


(TPP-dependent beta subunit) acoB] [GN:acoB] [CL:pyruvate dehydrogenase


(lipoamide) beta chain] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182797:g2633131] [LN:BSUB0005] [AC:Z99108:AL009126] [PN:acetoin


dehydrogenase E1 component] [GN:acoB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:alternate gene name:yfjJ] [LE:76693] [RE:77721]


[DI:direct] >gp:[GI:d1025207:g2780394] [LN:D78509] [AC:D78509] [PN:YfjJ]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:AC327) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis YfjG-YfjR genes, complete cds.]


[LE:8604] [RE:9632] [DI:complement] >gp:[GI:g2245638] [LN:AF006075]


[AC:AF006075] [PN:TPP-dependent acetoin dehydrogenase, E1] [GN:acoB]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis acetoin


dehydrogenase enzyme system gene cluster, ribosomal protein L6-like protein


gene, partial cds, TPP-dependent acetoin dehydrogenase, E1 alpha-subunit


CacoA), TPP-dependent acetoin dehydrogenase, E1 beta-subunit (acoB),


dihydrolipoamideacetyltransferase (acoC) and dihydrolipoamide dehydrogenase


(acoL) genes, complete cds, and regulatory protein (acoR) gene, partial cds.]


[NT:beta subunit of the E1 component of the acetoin] [LE:1830] [RE:2858]


[DI:direct] >gp:[GI:g2245638] [LN:AF006075] [AC:AF006075] [PN:TPP-dependent


acetoin dehydrogenase, E1] [GN:acoB] [OR:Bacillus subtilis] [DB:genpept]


[DE:Bacillus subtilis acetoin dehydrogenase enzyme system gene


cluster, ribosomal protein L6-like protein gene, partial cds,


TPP-dependentacetoin dehydrogenase, E1 alpha-subunit (acoA),


TPP-dependentacetoin dehydrogenase, E1 beta-subunit (acoB),


dihydrolipoamideacetyltransferase (acoC) and dihydrolipoamide dehydrogenase


(acoL) genes, complete cds, and regulatory protein (acoR) gene, partial cds.]


[NT:beta subunit of the E1 component of the acetoin] [LE:1830] [RE:2858]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_26751887_c1_1608
1100
4872
954
317
297
2.5e-26










Description


sp:[LN:APBA_AQUAE] [AC:O67619] [GN:APBA:AQ_1727] [OR:AQUIFEX AEOLICUS]


[EC:1.1.1.169] [DE:(REDUCTASE) (KPA REDUCTASE)] [SP:O67619] [DB:swissprot]


>pir:[LN:A70449] [AC:A70449] [PN:hypothetical protein aq_1727] [GN:aq_1727]


[OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2984043] [LN:AE000753]


[AC:AE000753:AE000657] [PN:putative protein] [GN:aq_1727] [OR:Aquifex


aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 85 of 109 of the


complete genome.] [LE:5968] [RE:6900] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_273452_c2_1815
1101
4873
1278
425
800
1.2e-79










Description


sp:[LN:HMDH_ARCFU] [AC:O28538] [GN:HMGA:AF1736] [OR:ARCHAEOGLOBUS FULGIDUS]


[EC:1.1.1.34] [DE:(REDUCTASE)] [SP:O28538] [DB:swissprot] >pir:[LN:G69466]


[AC:G69466] [PN:3-hydroxy-3-methylglutaryl-coenzyme A reductase (mvaA)


homolog] [OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2648815]


[LN:AE000983] [AC:AE000983:AE000782] [PN:3-hydroxy-3-methylglutaryl-coenzyme


A reductase] [GN:AF1736] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2]


[DE:Archaeoglobus fulgidus section 124 of 172 of the complete genome.]


[NT:similar to SP:P13702 GB:M29727 GB:M31807 PID:151259] [LE:7093] [RE:8403]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2735807_c3_1983
1102
4874
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2739050_c2_1816
1103
4875
927
308
583
1.2e-56










Description


sp:[LN:YWBI_BACSU] [AC:P39592] [GN:YWBI:IPA-24D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN THIK-EPR INTERGENIC REGION]


[SP:P39592] [DB:swissprot] >pir:[LN:S39679] [AC:S39679:G70051]


[PN:transcription regulator homolog ywbI:protein ipa-24d] [GN:ywbI]


[CL:probable transcription regulator lsyR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g413948] [LN:BSGENR] [AC:X73124] [GN:ipa-24d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39592]


[LE:24460] [RE:25365] [DI:direct] >gp:[GI:e1186330:g2636366] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywbI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:alternate gene name:ipa-24d; similar to]


[SP:P39592] [LE:132594] [RE:133499] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2739561_f1_99
1104
4876
1440
479
1505
2.5e-154










Description


sp:[LN:GLPT_BACSU] [AC:P37948] [GN:GLPT] [OR:BACILLUS SUBTILIS]


[DE:(PERMEASE)] [SP:P37948] [DB:swissprot] >pir:[LN:I40417]


[AC:I40417:F69634:S37250] [PN:glycerol-3-phosphate transport protein


glpT:glycerol-3-phosphate permease glpT] [GN:glpT] [CL:hexose phosphate


transport protein uhpT] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1034077:g3599636] [LN:AB006424] [AC:AB006424] [GN:ybeE]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb region between 17


and 23 degree.] [LE:36984] [RE:38318] [DI:complement] >gp:[GI:g403372]


[LN:BSGLPTQ] [AC:Z26522] [PN:glycerol 3-phosphate permease] [GN:glpT]


[FN:uptake of glycerol 3-phosphate] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis glpT and glpQ genes for glycerol 3-phosphate permease and


glycerophosphoryl diester phosphodiesterase.] [SP:P37948] [LE:315] [RE:1649]


[DI:direct] >gp:[GI:e1182166:g2632500] [LN:BSUB0002] [AC:Z99105:AL009126]


[PN:glycerol-3-phosphate permease] [GN:glpT] [FN:uptake of


glycerol-3-phosphate] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 2 of 21):from 194651 to 415810.]


[NT:alternate gene name:ybeE] [SP:P37948] [LE:39333] [RE:40667]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2760930_f1_121
1105
4877
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2767577_c3_2139
1106
4878
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2790936_f2_823
1107
4879
954
317
834
3.1e-83










Description


sp:[LN:MANA_STRMU] [AC:Q59935] [GN:PMI] [OR:STREPTOCOCCUS MUTANS]


[EC:5.3.1.8] [DE:(PMI) (PHOSPHOHEXOMUTASE)] [SP:Q59935] [DB:swissprot]


>gp:[GI:d1004537:g451216] [LN:STRPMI] [AC:D16594] [PN:Mannosephosphate


Isomerase] [GN:pmi] [OR:Streptococcus mutans] [SR:Streptococcus mutans


(strain:GS-5) DNA] [DB:genpept-bct1] [EC:5.3.1.8] [DE:S. mutans pmi gene for


mannosephosphate isomerase (complete cds) and scrK gene for fructokinase


(partial cds).] [LE:241] [RE:1191] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2814000_c3_2159
1108
4880
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2819803_c3_1966
1109
4881
363
120
206
1.1e-16










Description


gp:[GI:e1312399:g3341642] [LN:VCH231123] [AC:AJ231123] [GN:z61r] [OR:Vibrio


cholerae] [DB:genpept-bct1] [DE:Vibrio cholerae z61r gene.] [LE:47] [RE:388]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2823562_c3_2100
1110
4882
1365
454
909
3.5e-91










Description


pir:[LN:A71026] [AC:A71026] [PN:probable aminotransferase] [GN:PH1501]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031552:g3257926]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:438aa long hypothetical aminotransferase] [GN:PH1501] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus


horikoshi] [DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA,


1166001–1485000 nt. position (6/7).] [NT:similar to owl:D5045389 percent


identity:38.287 in] [LE:170905] [RE:172221] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2853431_f2_504
1111
4883
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2854787_c1_1553
1112
4884
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_2867961_c2_1846
1113
4885
963
320
410
2.7e-38










Description


pir:[LN:A69756] [AC:A69756] [PN:adhesion protein homolog ycdH] [GN:ycdH]


[CL:adhesin B] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1023108:g2415736]


[LN:AB000617] [AC:AB000617] [PN:YcdH] [GN:ycdH] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA, 22 to 25 degree region, complete cds.] [NT:homologue of


adhesion protein precursor of] [LE:21421] [RE:22380] [DI:direct]


>gp:[GI:e1182237:g2632571] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycdH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21):from 194651 to 415810.] [NT:similar to


adhesion protein] [LE:113236] [RE:114195] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29304552_c3_2150
1114
4886
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29352312_c3_2063
1115
4887
765
254
617
3.1e-60










Description


sp:[LN:YXDL_BACSU] [AC:P42423] [GN:YXDL:B65F] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN IDH 3′ REGION]


[SP:P42423] [DB:swissprot] >pir:[LN:A70074] [AC:A70074] [PN:ABC transporter


(ATP-binding protein) homolog yxdL] [GN:yxdL] [CL:ATP-binding cassette


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1003812:g709993]


[LN:BACIOLO] [AC:D14399] [PN:hypothetical protein] [GN:B65F] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (168 trpC2)) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis 15 kb chromosome segment contains


the iol operon.] [NT:homologous to cell division protein FtsE of E.]


[LE:13014] [RE:13787] [DI:direct] >gp:[GI:e1184689:g2636510] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yxdL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:similar to ABC transporter (ATP-binding


protein)] [SP:P42423] [LE:69902] [RE:70675] [DI:complement]


>gp:[GI:d1008911:g1408484] [LN:D45912] [AC:D45912] [GN:yxdL] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (Marburg 168; trpC2)) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence between the iol and


hut operon, partial and complete cds.] [NT:homologous to FtsE protein of E.


coli, belonging to] [LE:801] [RE:1574] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29375307_f2_499
1116
4888
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29400332_c1_1571
1117
4889
417
138
309
1.3e-27










Description


pir:[LN:C69770] [AC:C69770] [PN:hypothetical protein ydaT] [GN:ydaT]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020028:g1881248] [LN:AB001488]


[AC:AB001488] [GN:ydaT] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:FUNCTION


UNKNOWN.] [LE:26046] [RE:26498] [DI:complement] >gp:[GI:e1182404:g2632738]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydaT] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [LE:89790] [RE:90242] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29493827_f2_872
1118
4890
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29503403_f2_788
1119
4891
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29532827_f2_477
1120
4892
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29695327_c2_1739
1121
4893
750
249





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_29955003_c2_1894
1122
4894
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30007827_c2_1943
1123
4895
789
262
605
5.8e-59










Description


pir:[LN:E69761] [AC:E69761:I40450:S52381] [PN:probable glutamine ABC


transporter] [GN:yckK] [CL:lysine-arginine-ornithine-binding protein]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182313:g2632647] [LN:BSUB0002]


[AC:Z99105:AL009126] [GN:yckK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2 of 21):


from 194651 to 415810.] [NT:similar to glutamine ABC transporter] [LE:215587]


[RE:216393] [DI:complement] >gp:[GI:e1182328:g2632662] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:yckK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21):


from 402751 to 611850.] [NT:similar to glutamine ABC transporter] [LE:7487]


[RE:8293] [DI:complement] >gp:[GI:d1009629:g1805432] [LN:D50453] [AC:D50453]


[PN:homologue of glutamine-binding periplasmic] [GN:yckK] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing the amyE-srfA


region, complete cds.] [LE:89890] [RE:90696] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30078378_c1_1437
1124
4896
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3009382_c3_1965
1125
4897
531
176





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30095011_f1_179
1126
4898
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30133562_c1_1399
1127
4899
1191
396
306
2.8e-27










Description


sp:[LN:YYBF_BACSU] [AC:P37498] [GN:YYBF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 44.2 KD PROTEIN IN COTF-TETB INTERGENIC REGION] [SP:P37498]


[DB:swissprot] >pir:[LN:S65991] [AC:S65991:A70087] [PN:membrane protein


yybF] [GN:yybF] [CL:probable antibiotic resistance protein yybF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005739:g467351] [LN:BAC180K]


[AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:27159] [RE:28373]


[DI:complement] >gp:[GI:e1184792:g2636613] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yybF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:similar to antibiotic resistance protein]


[SP:P37498] [LE:179091] [RE:180305] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_302_f2_645
1128
4900
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30360925_f2_901
1129
4901
642
213
204
2.0e-16










Description


sp:[LN:Y357_HAEIN] [AC:P44658] [GN:HI0357] [OR:HAEMOPHILUS INFLUENZAE]


[DE:PUTATIVE THIAMINE BIOSYNTHESIS PROTEIN HI0357] [SP:P44658]


[DB:swissprot] >pir:[LN:C64063] [AC:C64063] [PN:hypothetical protein


HI0357] [OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g1573325] [LN:U32720]


[AC:U32720:L42023] [PN:thiamine biosynthesis protein, putative] [GN:HI0357]


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 35 of 163 of the complete genome.] [NT:similar to SP:P42883


SP:P43534 SP:P47183] [LE:3006] [RE:3950] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30367767_f1_56
1130
4902
1533
510
342
5.9e-31










Description


pir:[LN:D71235] [AC:D71235] [PN:hypothetical protein PH0142] [GN:PH0142]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030154:g3256528]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:289aa long hypothetical protein] [GN:PH0142] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [NT:motif = soybean


trypsin inhibitor (Kunitz) protease] [LE:124718] [RE:125587] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30470325_c3_2181
1131
4903
1953
650
425
8.1e-38










Description


pir:[LN:A70027] [AC:A70027] [PN:conserved hypothetical protein yvaC]


[GN:yvaC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186043:g2635868]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvaC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[LE:45749] [RE:47644] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_30651577_c3_2155
1132
4904
612
203
88
0.00087










Description


pir:[LN:G70065] [AC:G70065] [PN:hypothetical protein ywpE] [GN:ywpE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184540:g2636159] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywpE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [LE:143698] [RE:144006] [DI:complement]


>gp:[GI:e289144:g1763706] [LN:BSZ83337] [AC:Z83337] [GN:ywpE] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis mbl, flh[O, P], rapD,


ywp [B, C, D, E, F, G, H, I, J] and ywqA genes.] [LE:5315] [RE:5623] [DI:direct]


>gp:[GI:e1184540:g2636159] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywpE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [LE:143698]


[RE:144006] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_31490687_f3_1096
1133
4905
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_31517587_c2_1663
1134
4906
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3157062_c1_1475
1135
4907
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_31693_c2_1716
1136
4908
699
232
128
7.1e-08










Description


pir:[LN:JH0364] [AC:JH0364] [PN:hypothetical protein 176 (SAGP 5′ region)]


[OR:Streptococcus pyogenes] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_31720942_f2_813
1137
4909
576
191





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_31755012_c1_1340
1138
4910
978
325
886
9.6e-89










Description


pir:[LN:E70070] [AC:E70070] [PN:metabolite transport protein homolog ywtG]


[GN:ywtG] [CL:glucose transport protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184489:g2636109] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywtG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [NT:similar to


metabolite transport protein] [LE:94500] [RE:95873] [DI:complement]


>gp:[GI:e308095:g1894771] [LN:BSZ92954] [AC:Z92954] [GN:ywtG] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis yws [A, B, C, D, E, F, G] and gerBC


genes.] [NT:product highly similar to metabolite transport] [LE:6609]


[RE:7982] [DI:direct] >gp:[GI:e1184489:g2636109] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywtG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:similar to metabolite transport protein] [LE:94500]


[RE:95873] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3182927_c2_1673
1139
4911
2082
693
3598
0.0










Description


gp:[GI:g2981225] [LN:AF053006] [AC:AF053006] [PN:lipase precursor] [GN:geh1]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis lipase precursor (geh1) gene, complete cds.] [LE:148] [RE:2214]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_32205143_c2_1642
1140
4912
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_32220202_f2_708
1141
4913
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_32221012_c1_1567
1142
4914
471
156
114
4.6e-06










Description


sp:[LN:NPT4_HUMAN] [AC:O00476] [GN:SLC17A4:NPT4] [OR:HOMO SAPIENS]


[SR:,HUMAN] [DE:(COTRANSPORTER 4) (NA(+)/PI COTRANSPORTER 4)] [SP:O00476]


[DB:swissprot] >gp:[GI:g2062692] [LN:HSU90545] [AC:U90545] [PN:sodium


phosphate transporter] [GN:NPT4] [OR:Homo sapiens] [SR:human]


[DB:genpept-pri2] [DE:Human sodium phosphate transporter (NPT4) mRNA,


complete cds.] [LE:377] [RE:1582] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_32614078_f2_539
1143
4915
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_32664093_f2_568
1144
4916
627
208
142
6.7e-10










Description


pir:[LN:G70418] [AC:G70418] [PN:probable thiamine phosphate synthase 2]


[GN:thiE1] [CL:probable thiamin-phosphate pyrophosphorylase:


thiamin-phosphate pyrophosphorylase homology] [OR:Aquifex aeolicus]


[DB:pir2] >gp:[GI:g2983767] [LN:AE000736] [AC:AE000736:AE000657]


[PN:thiamine phosphate synthase] [GN:thiE1] [ER:Aquifex aeolicus]


[DB:genpept-bct2] [DE:Aquifex aeolicus section 68 of 109 of the complete


genome.] [LE:15292] [RE:15852] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33203385_c3_1997
1145
4917
597
198
967
2.5e-97










Description


gp:[GI:g2978430] [LN:SEU43366] [AC:U43366] [PN:IcaR] [GN:icaR]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis operon mediating intercellular adhesion:IcaR, IcaA, IcaD, IcaB,


and IcaC genes, complete cds.] [LE:39] [RE:596] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33209682_c2_1718
1146
4918
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33211092_f3_1123
1147
4919
471
156
72
0.030










Description


sp:[LN:VL02_VARV] [AC:P33041] [GN:L2R:M2R] [OR:VARIOLA VIRUS] [DE:PROTEIN


L2] [SP:P33041] [DB:swissprot] >pir:[LN:S33088] [AC:S33088:H36844] [PN:L2R


protein:M2R protein] [CL:vaccinia virus F3 protein] [OR:variola virus]


[DB:pir2] >gp:[GI:g262433] [LN:S55844] [AC:S55844] [GN:L2R] [OR:Variola


major virus] [SR:Variola major virus India-1967] [DB:genpept-vrl]


[DE:G9R . . . H7R Evariola major virus, India-1967, Genomic, 19 genes, 18029


nt].] [NT:This sequence comes from FIG. 2.] [LE:1860] [RE:2123] [DI:direct]


>gp:[GI:g438992] [LN:VARCG] [AC:L22579] [OR:Variola major virus] [SR:Variola


major virus (strain Bangladesh-1975) DNA] [DB:genpept-vrl] [DE:Variola major


virus (strain Bangladesh-1975) complete genome.] [NT:homolog of vaccinia


virus CDS L2R; putative] [LE:69256] [RE:69519] [DI:direct] >gp:[GI:g297254]


[LN:VVCGAA] [AC:X69198] [GN:M2R] [OR:Variola virus] [DB:genpept-vrl]


[DE:Variola virus DNA complete genome.] [SP:P33041] [LE:68623] [RE:68886]


[DI:direct] >gp:[GI:g62350] [LN:VVHINDQKH] [AC:X67119] [GN:L2R COP]


[OR:Variola virus] [DB:genpept-vrl] [DE:Variola virus (HindIII-Q, K, H, M, L, I, F


genome fragment) genes.] [SP:P33041] [LE:18508] [RE:18771] [DI:direct]


>gp:[GI:e92818:g1143683] [LN:VVL8R] [AC:X76267] [OR:Variola virus]


[DB:genpept-vrl] [DE:Variola virus (Garcia-1966)


L8R, I1L, I3R, I2L, I4L, I5R, I5.5R, I6R, I7L, I8R, I9R, N1R, N2R, N3L, N4R and N5R


genes.] [NT:ORF13R] [SP:P33041] [LE:10592] [RE:10855] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33219007_f3_1152
1148
4920
375
124





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33241093_c2_1806
1149
4921
1557
518
1634
5.2e-168










Description


pir:[LN:A69759] [AC:A69759] [PN:1-pyrroline-5-carboxylate dehydrogenase


homolog ycgN] [GN:ycgN] [CL:aldehyde dehydrogenase (NAD+):aldehyde


dehydrogenase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182273:g2632607] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycgN]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21):from 194651 to 415810.] [NT:similar to


1-pyrroline-5-carboxylate dehydrogenase] [LE:150401] [RE:151948] [DI:direct]


>gp:[GI:d1009590:g1805393] [LN:D50453] [AC:D50453] [PN:68% identity protein


to] [GN:ycgN] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168


trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for 25–36 degree


region containing the amyE-srfA region, complete cds.] [LE:24702] [RE:26249]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33242842_c1_1579
1150
4922
2871
956
315
2.0e-24










Description


pir:[LN:S59797] [AC:S59797] [PN:hypothetical protein YDR332w:hypothetical


protein D9798.1] [CL:unassigned DEAD/H box helicases:DEAD/H box helicase


homology] [OR:Saccharomyces cerevisiae] [DB:pir2] [MP:4R]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33250287_c1_1513
1151
4923
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33304082_f1_387
1152
4924
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33359381_c2_1697
1153
4925
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33391337_c2_1891
1154
4926
864
287
168
2.1e-12










Description


gp:[GI:g4894301] [LN:AF065404] [AC:AF065404] [PN:pXO1–85] [OR:Bacillus


anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence plasmid PX01,


complete sequence.] [LE:99636] [RE:100319] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33595087_c2_1645
1155
4927
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33620176_c3_2091
1156
4928
858
285
494
3.3e-47










Description


gp:[GI:d1020251:g1943993] [LN:AB001896] [AC:AB001896] [GN:orf30]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:912) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus DNA for sigma70 operon, complete


cds.] [LE:1501] [RE:2310] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33837817_c1_1431
1157
4929
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33985007_f3_1266
1158
4930
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_33988778_f2_888
1159
4931
660
219
636
3.0e-62





Description







pir:[LN:JC4511] [AC:JC4511] [PN:pyroglutamyl-peptidase I,:bacterial


pyrrolidone carboxyl peptidase (PYRase)] [GN:pcp] [OR:Staphylococcus


aureus] [EC:3.4.19.3] [DB:pir2] >gp:[GI:g790573] [LN:SAU19770] [AC:U19770]


[PN:pyrrolidone carboxyl peptidase] [GN:pcp] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus pyrrolidone carboxyl peptidase


(pcp) gene, complete cds.] [NT:pyrase] [LE:204] [RE:842] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34016937_c1_1600
1160
4932
1383
460
1178
1.1e-119










Description


pir:[LN:C69670] [AC:C69670] [PN:glycine betaine/carnitine/choline ABC


transporter (ATP-bindin) opuCA] [GN:opuCA] [CL:glycine betaine/proline


transport protein proV:ATP-binding cassette homology:CBS homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2271389] [LN:AF009352]


[AC:AF009352] [PN:ATPase] [GN:opuCA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis osmoprotectant transport system OpuC


including ATPase (opuCA), transmembrane protein (opuCB),


osmoprotectant binding protein precursor (opuCC) and transmembrane protein


(opuCD) genes, complete cds.] [NT:OpuCA; part of the osmoprotectant transport


system] [LE:860] [RE:2002] [DI:direct] >gp:[GI:e1186071:g2635896]


[LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine betaine/carnitine/choline


ABC] [GN:opuCA] [FN:high affinity transport of glycine betaine,]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 18 of 21):from 3399551 to 3609060.] [NT:alternate gene name:


yvbE] [LE:69373] [RE:70515] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34021912_c2_1736
1161
4933
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3402312_c1_1529
1162
4934
1761
586
1316
2.6e-134










Description


pir:[LN:G69769] [AC:G69769] [PN:pyruvate oxidase homolog ydaP] [GN:ydaP]


[CL:acetolactate synthase large chain:thiamine pyrophosphate-binding domain


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020024:g1881244]


[LN:AB001488] [AC:AB001488] [GN:ydaP] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the region between 35 and 47 degree.]


[NT:SIMILAR TO PYRUVATE OXIDASE AND ACETOLACTATE] [LE:21889] [RE:23613]


[DI:direct] >gp:[GI:e1182400:g2632734] [LN:BSUB0003] [AC:Z99106:AL009126]


[GN:ydaP] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 3 of 21):from 402751 to 611850.]


[NT:similar to pyruvate oxidase] [LE:85633] [RE:87357] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34033563_c1_1627
1163
4935
327
108
388
5.7e-36










Description


gp:[GI:e1429590:g4756150] [LN:A67161] [AC:A67161] [FN:NIRD GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:2589] [RE:2903] [DI:direct]


>gp:[GI:g4433640] [LN:AF029224] [AC:AF029224:AF029225] [PN:NirD] [GN:nirD]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


NADH-dependent nitrite] [LE:4774] [RE:5088] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34094136_f1_408
1164
4936
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34157807_f2_816
1165
4937
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34194002_c2_1941
1166
4938
711
236
657
1.8e-64










Description


sp:[LN:PMGY_ZYMMO] [AC:P30798] [GN:PGM] [OR:ZYMOMONAS MOBILIS] [EC:5.4.2.1]


[DE:(BPG-DEPEND[NT PGAD4)] [SP:P30798] [DB:swissprot] >pir:[LN:C40649]


[AC:C40649] [PN:phosphoglycerate mutase,] [CL:phosphoglycerate


mutase:phosphoglycerate mutase homology] [OR:Zymomonas mobilis] [EC:5.4.2.1]


[DB:pir2] >gp:[GI:g155611] [LN:ZMOPGMA] [AC:L09651]


[PN:phosphoglyceromutase] [GN:pgm] [OR:Zymomonas mobilis] [SR:Zymomonas


mobilis (strain CP4) DNA] [DB:genpept-bct1] [DE:Zymomonas mobilis


phosphoglyceromutase (pgm) gene, complete cds, and 2-hydroxyacid


dehydrogenase homologue (ddh) gene, 5′ end.] [LE:317] [RE:1003] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34197318_f3_1128
1167
4939
903
300
1117
3.2e-113










Description


pir:[LN:A49943] [AC:A49943:S33358] [PN:fructose-bisphosphate aldolase,]


[OR:Staphylococcus carnosus] [EC:4.1.2.13] [DB:pir2] >gp:[GI:g297874]


[LN:SCFDA] [AC:X71729] [PN:fructose-bisphosphate aldolase] [GN:fda]


[OR:Staphylococcus carnosus] [DB:genpept-bct1] [EC:4.1.2.13] [DE:S. carnosus


fda gene.] [SP:Q07159] [LE:667] [RE:1557] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34273436_f2_498
1168
4940
855
284
372
2.8e-34










Description


sp:[LN:YQJG_BACSU] [AC:P54544] [GN:YQJG] [OR:BACILLUS SUBTILIS]


[DE:PRECURSOR] [SP:P54544] [DB:swissprot] >pir:[LN:G69963] [AC:G69963]


[PN:lipoprotein SpoIIIJ-like homolog yqjG] [GN:yqjG] [CL:stage III


sporulation protein:stage III sporulation protein homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1013293:g1303958] [LN:BACJHG42]


[AC:D84432:D82370] [PN:YqjG] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:234919] [RE:235746]


[DI:complement] >gp:(GI:e1185657:g2634823] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to lipoprotein SpoIIIJ-like]


[SP:P54544] [LE:87873] [RE:88700] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34385012_f2_465
1169
4941
1362
453
364
6.0e-40










Description


pir:[LN:S62194] [AC:S62194] [PN:hypothetical protein 4] [CL:dipeptide


transport protein] [OR:Methanosarcina barkeri] [DB:pir2]


>gp:[GI:e212291:g1124957] [LN:MBFMDSUBS] [AC:X93084] [GN:orf4]


[OR:Methanosarcina barkeri] [DB:genpept-bct1] [DE:M. barkeri fmdE, fmdF,


fmdA, fmdC, fmdD, fmdB, orf4, orf3, orf2, and or f1 genes.] [LE:<1] [RE:1588]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34410843_c2_1690
1170
4942
1431
476





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000895_34412952_c3_2210
1171
4943
783
260
580
2.6e-56










Description


sp:[LN:YBBM_ECOLI] [AC:P77307] [GN:YBBM] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 28.2 KD PROTEIN IN USHA-TESA INTERGENIC REGION] [SP:P77307]


[DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI75303000985_34414192_c3_2229
1172
4944
831
276
113
0.00012










Description


pir:[LN:F69104] [AC:F69104] [PN:3′,5′-cyclic-nucleotide phosphodiesterase,


cpdA homolog MTH178:Icc related protein] [GN:MTH178]


[CL:3′,5′-cyclic-nucleotide phosphodiesterase cpdA:3′,5′-cyclic-nucleotide


phosphodiesterase cpdA homology:phosphoesterase core homology]


[OR:Methanobacterium thermoautotrophicum] [EC:3.1.4.17] [DB:pir1]


>gp:[GI:g2621221] [LN:AE000805] [AC:AE000805:AE000666] [PN:Icc related


protein] [GN:MTH178] [OR:Methanobacterium thermoautotrophicum]


[DB:genpept-bct1] [DE:Methanobacterium thermoautotrophicum from bases 114371


to 125512 (section 11 of 148) of the complete genome.] [NT:Function


Code:10.02 - Metabolism of Macromolecules,] [LE:10465] [RE:11055]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34430428_c2_1949
1173
4945
375
124
83
0.0051










Description


pir:[LN:C69776] [AC:C69776] [PN:hypothetical protein yddJ] [GN:yddJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020089:g1881309] [LN:AB001488]


[AC:AB001488] [GN:yddJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:FUNCTION


UNKNOWN.] [LE:78831] [RE:79211] [DI:direct] >gp:[GI:e1182465:g2632799]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:yddJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [LE:142576] [RE:142956] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34554692_f1_62
1174
4946
474
157
403
1.5e-37










Description


gp:[GI:g1575025] [LN:SAU52961] [AC:U52961] [PN:holin-like protein LrgA]


[GN:lrgA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus strain = NCTC


8325-4] [DB:genpept-bct2] [DE:Staphylococcus aureus holin-like protein LrgA


(lrgA) and LrgB (lrgB) genes, complete cds.] [NT:LytSR-regulated gene;


similar to E. coli yohJ] [LE:369] [RE:812] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34585317_c2_1938
1175
4947
1491
496
130
2.6e-05










Description


gp:[GI:g454844] [LN:SCMP48EGG] [AC:M74170] [OR:Schistosoma mansoni]


[SR:Schistosoma mansoni (strain NMRI) female adult worm DNA]


[DB:genpept-inv1] [DE:Schistosoma mansoni p48 eggshell protein gene,


complete cds.] [NT:ORF 3] [LE:687] [RE:1868] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34617937_f3_1227
1176
4948
525
174
223
1.3e-17










Description


gp:[GI:g2952545] [LN:AF051898] [AC:AF051898] [PN:coronin binding protein]


[GN:DB10] [OR:Dictyostelium discoideum] [DB:genpept-inv1] [DE:Dictyostelium


discoideum coronin binding protein (DB10) mRNA, complete cds.] [LE:108]


[RE:1790] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_34647150_c1_1439
1177
4949
1356
451
274
1.6e-23










Description


gp:[GI:g2570198] [LN:LSU54556] [AC:U54556] [PN:microfilarial sheath protein


SHP3] [GN:shp3] [OR:Litomosoides sigmodontis] [DB:genpept-inv1]


[DE:Litomosoides sigmodontis microfilarial sheath proteins SHP3a (shp3a) and


SHP3 (shp3) genes, complete cds.] [NT:structural protein; similar to shp3


genes from] [LE:7991:8260] [RE:8047:9219] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35193950_c2_1811
1178
4950
489
162





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35317188_c2_1684
1179
4951
6414
2137
2779
2.4e-289










Description


gp:[GI:g3929312] [LN:AF100426] [AC:AF100426] [PN:fimbriae-associated protein


Fap1] [GN:fap1] [OR:Streptococcus parasanguinis] [DB:genpept-bct2]


[DE:Streptococcus parasanguis fimbriae-associated protein Fap1 (fap1) gene,


complete cds.] [NT:invovled in fimbriae assembly and fimbriae-mediated]


[LE:284] [RE:7996] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35433438_f3_1030
1180
4952
1137
378
420
2.3e-39










Description


sp:[LN:GLOX_BACSU] [AC:O31616] [GN:YJBR] [OR:BACILLUS SUBTILIS] [EC:1.5.3.-]


[DE:GLYCINE OXIDASE,] [SP:O31616] [DB:swissprot] >pir:[LN:B69845] [AC:B69845]


[PN:sarcosine oxidase homolog yjbR] [GN:yjbR] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183187:g2633521] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjbR] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21):from 1194391 to 1411140.]


[NT:similar to sarcosine oxidase] [SP:O31616] [LE:48816] [RE:49925]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35449093_c2_1668
1181
4953
831
276
103
0.0069










Description


sp:[LN:YHI3_LACLA] [AC:Q02147] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [DE:HYPOTHETICAL 38.0 KD PROTEIN IN


HISC-HISG INTERGENIC REGION (ORF3)] [SP:Q02147] [DB:swissprot]


>pir:[LN:C45734] [AC:C45734] [PN:histidyl-tRNA synthetase homolog]


[OR:Lactococcus lactis subsp. lactis]LDB:pir2] >gp:[GI:g2565140]


[LN:LLU92974] [AC:U92974:M90760:M90761] [PN:unknown] [OR:Lactococcus lactis]


[DB:genpept-bct1] [DE:Lactococcus lactis unknown gene, partial cds, and HisC


(hisC), unknown, HisG (hisG), unknown, HisB (hisB), unknown, HisH (hish), HisA


(hisA), HisF (hisF), HisIE (hisIE), unknown, unknown, LeuA (leuA), LeuB


(leuB), LeuC (leuC), LeuD (leuD), unknown, IlvD (ilvD), IlvB (ilvB), IlvN,


IlvC (ilvC), IlvA (ilvA), AldB (aldB) and aldR (aldR) genes, complete cds.]


[NT:ORF2; potential regulator; similar to histidyl-tRNA] [LE:2146] [RE:3132]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35687_f2_812
1182
4954
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35817137_f3_1254
1183
4955
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35993802_c2_1685
1184
4956
1584
527





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_35995316_f1_393
1185
4957
1257
418
2160
9.6e-224










Description


pir:[LN:S77608] [AC:S77608] [PN:probable intercellular adhesion protein


A:glycosyltransferase:icaA protein] [GN:icaA] [OR:Staphylococcus


epidermidis] [DB:pir2] >gp:[GI:g1161380] [LN:SEU43366] [AC:U43366] [PN:IcaA]


[GN:icaA] [OR:Staphylococcus epidermidis] [DB:genpept-bct2]


[DE:Staphylococcus epidermidis operon mediating intercellular adhesion:IcaR,


IcaA, IcaD, IcaB, and IcaC genes, complete cds.] [LE:761] [RE:1999]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36127302_c2_1875
1186
4958
888
295
1058
5.7e-107










Description


sp:[LN:GTAB_BACSU] [AC:Q05852] [GN:GTAB] [OR:BACILLUS SUBTILIS] [EC:2.7.7.9]


[DE:(GENERAL STRESS PROTEIN 33) (G5P33)] [SP:Q05852] [DB:swissprot]


>pir:[LN:A40650] [AC:A40650:B69638] [PN:UTP--glucose-1-phosphate


uridylyltransferase,:UDP-glucose pyrophosphorylase] [GN:gtaB]


[CL:Escherichia coli UTP--glucose-1-phosphate uridylyltransferase]


[OR:Bacillus subtilis] [EC:2.7.7.9] [DB:pirl] >gp:[GI:g289287] [LN:BACGTABX]


[AC:L12272] [PN:UDP-glucose pyrophosphorylase] [GN:gtaB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain 168, sub_species Marburg) DNA]


[DB:genpept-bct1] [EC:2.7.7.9] [DE:Bacillus subtilis UDP-glucose


pyrophosphorylase (gtaB) gene, complete cds.] [NT:similar to UDP-glucose


pyrophosphorylase of] [LE:120] [RE:9981 [DI:direct] >gp:[GI:g405623]


[LN:BSLYTGTA] [AC:Z22516] [PN:UDP-glucose pyrophosphorylase] [GN:gtaB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.7.9] [DE:B. subtilis lytR,


orfX, and gtaB genes.] [NT:similar to other procaryotic UDP-glucose]


[SP:Q05852] [LE:1581] [RE:2459] [DI:direct] >gp:[GI:e1184473:g2636093]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:UTP-glucose-1-phosphate


uridylyltransferase] [GN:gtaB] [FN:glucosylation of teichoic acid]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.7.9] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [SP:Q05852]


[LE:67599] [RE:68477] [DI:direct] >gp:[GI:e1184473:g2636093] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UTP-glucose-1-phosphate uridylyltransferase]


[GN:gtaB] [FN:glucosylation of teichoic acid] [OR:Bacillus subtilis]


[DB:genpept] [EC:2.7.7.9] [DE:Bacillus subtilis complete genome (section 19


of 21):from 3597091 to 3809700.] [SP:Q05852] [LE:67599] [RE:68477]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36134678_c3_2220
1187
4959
699
232
674
2.8e-66










Description


pir:[LN:F69670] [AC:F69670] [PN:glycine betaine/carnitine/choline ABC


transporter (membrane p) opuCD] [GN:OpUCD] [CL:glycine


betaine/carnitine/choline ABC transporter] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g2271392] [LN:AF009352] [AC:AF009352] [PN:transmembrane protein]


[GN:opuCD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


osmoprotectant transport system OpuC including ATPase (opuCA), transmembrane


protein (opuCB), osmoprotectant binding protein precursor (opuCC) and


transmembrane protein (opuCD) genes, complete cds.] [NT:OpuCD; part of the


osmoprotectant transport system] [LE:3627] [RE:4316] [DI:direct]


>gp:[GI:e1186068:g2635893] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine


betaine/carnitine/choline ABC] [GN:opuCD] [FN:high affinity transport of


glycine betaine,] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 18 of 21):from 3399551 to 3609060.]


[NT:alternate gene name:yvbB] [LE:67059] [RE:67748] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36142510_c1_1394
1188
4960
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36151692_c2_1840
1189
4961
681
226
671
5.8e-66










Description


sp:[LN:YFKO_BACSU] [AC:O34475] [GN:YFKO] [OR:BACILLUS SUBTILIS] [EC:1.-.-.-]


[DE:PUTATIVE NAD(P)H NITROREDUCTASE YFKO,] [SP:O34475] [DB:swissprot]


>pir:[LN:B69809] [AC:B69809] [EPN:NAD(P)H-flavin oxidoreductase homolog


yfkO] [GN:yfkO] [CL:nitroreductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182773:g2633107] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfkO]


[FN:unknown] [OR:Bacillus Subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21):from 802821 to 1011250.] [NT:similar to


NAD(P)H-flavin oxidoreductase] [SP:O34475] [LE:51099] [RE:51764] [DI:direct]


>gp:[GI:d1024284:g2626827] [LN:D83967] [AC:D83967] [PN:YfkO] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 74 degree region.] [LE:16157] [RE:16822]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36205285_c2_1717
1190
4962
780
259
284
6.0e-25










Description


sp:[LN:XYNC_CALSA] [AC:P23553] [GN:XYNC] [OR:CALDOCELLUM SACCHAROLYTICUM]


[SR:, CALDICELLULOSIRUPTOR SACCHAROLYTICUS] [EC:3.1.-.-] [DE:ACETYL ESTERASE,


(ACETYLXYLOSIDASE)] [SP:P23553] [DB:swissprot] >pir:[LN:B37202] [AC:B37202]


[PN:acetylesterase, (XyriC)] [OR:Caldocellum saccharolyticum] [EC:3.1.1.6]


[DB:pir2] >gp:[GI:g144297] [LN:CDCXYNAB] [AC:M34459]


[OR:Caldicellulosiruptor saccharolyticus] [SR:C. saccharolyticum DNA, clone


pNZ1400] [DB:genpept-bct1] [DE:C. saccharolyticum xylanase A (XynA),


beta-xylosidase (XynB) and acetyl esterase (XynC) genes, complete cds.]


[NT:acetyl esterase (XynC)] [LE:1257] [RE:2057] [DI:direct]


>gp:[GI:g2645420] [LN:AF005383] [AC:AF005383] [PN:acetylxylosidase]


[GN:XynC] [OR:Caldicellulosiruptor saccharolyticus] [DB:genpept-bct2]


[DE:Caldicellulosiruptor saccharolyticus putative transport protein (XynG),


putative transport protein (XynH), xylanase (XynF), xylanase (XynE), xylanase


(XynD), xylanase (XynA), acetylxylosidase (XynC) and xylanase (XynB) genes,


complete cds.] [LE:13673] [RE:14473] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36214052_c3_1981
1191
4963
999
332
169
1.3e-10










Description


sp:[LN:Y31K_SULAC] [AC:P46218] [OR:SULFOLOBUS ACIDOCALDARIUS]


[DE:HYPOTHETICAL 31.5 KD PROTEIN] [SP:P4G2l8] [DB:swissprot]


>gp:[GI:g458265] [LN:SAU05664] [AC:U05664] [OR:Sulfolobus acidocaldarius]


[DB:genpept-bct1] [DE:Sulfolobus acidocaldarius RNA polymerase subunit


homolog gene, complete cds.] [NT:homologous to Swiss-Prot Accession Number


P20435:] [LE:61] [RE:888] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36225250_c2_1711
1192
4964
1542
513
2622
1.1e-272










Description


sp:[LN:SEPA_STAEP] [AC:P43148] [GN:SEPA] [OR:STAPHYLOCOCCUS EPIDERMIDIS]


[EC:3.4.24.-] [DE:EXTRACELLULAR ELASTASE PRECURSOR, (SEPP1)] [SP:P43148]


[DB:swissprot] >pir:[LN:A40659] [AC:A40659] [PN:elastase, SepP1]


[OR:Staphylococcus epidermidis] [EC:3.4.24.-] [DB:pir2] >gp:[GI:g396259]


[LN:SESEPP1A] [AC:X69957] [PN:protease] [GN:SepP1] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:S. epidermis gene for protease.]


[SP:P43148] [LE:164] [RE:1687] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36228252_c3_1990
1193
4965
777
258
678
1.1e-66










Description


sp:[LN:HIS6_BACSU] [AC:O34727] [GN:HISF] [OR:BACILLUS SUBTILIS] [DE:HISF


PROTEIN (CYCLASE)] [SP:O34727] [DB:swissprot] >pir:[LN:B69641] [AC:B69641]


[PN:HisF cyclase-like protein hisF] [GN:hisF] [CL:cyclase hisF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186175:g2636000] [LN:BSUB0018]


[AC:Z99121:AL009126] [PN:HisF cyclase-like protein] [GN:hisF] [FN:synthesis


of D-erythro-imidazole glycerol] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 18 of 21):from 3399551 to


3609060.] [SP:O34727] [LE:183072] [RE:183830] [DI:complement]


>gp:[GI:g2618870] [LN:AF017113] [AC:AF017113] [PN:cyclase] [GN:hisF]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 300–304


degree genomic sequence.] [NT:HisF protein] [LE:44003] [RE:44761]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36366326_c2_1646
1194
4966
771
256
409
3.4e-38










Description


pir:[LN:B69906] [AC:B69906] [PN:rarD protein homolog yojE] [GN:yojE]


[CL:Escherichia coli rarD protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185420:g2634341] [LN:BSUB0011] [AC:Z99114:AL009126] [GN:yojE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 11 of 21):from 2000171 to 2207900.] [NT:similar to


hypothetical proteins] [LE:122204] [RE:122995] [DI:complement]


>gp:[GI:g3169320] [LN:AF026147] [AC:AF026147] [PN:YojD] [GN:yojD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


YojA (yojA), YojB (yojB), YojC (yojC), YojD (yojD), YojE (yojE), YojF (yojF),


YojG (yojG), YojH (yojH), YojI (yojI), YojJ (yojJ), YojK (yojK), YojL (yojL),


YojM (yojM), YojN (yojN), and YojO (yojO) genes, complete cds; and OdhA


(odhA) gene,partial cds.] [NT:similar to Escherichia coli RarD protein:]


[LE:2270] [RE:3061] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_36617832_c1_1459
1195
4967
801
266
758
3.5e-75










Description


sp:[LN:SUMT_BACME] [AC:P29928] [GN:COBA] [OR:BACILLUS MEGATERIUM]


[EC:2.1.1.107] [DE:(METHYLASE) (SUMT) (UROPORPHYRINOGEN III METHYLASE)


(UROM)] [SP:P29928] [DB:swissprot] >pir:[LN:A42479] [AC:A42479]


[PN:S-adenosyl-L-methionine uroporphyrinogen III methyltransferase]


[CL:S-adenosyl-L-methionine uroporphyrinogen methyltransferase] [OR:Bacillus


megaterium] [DB:pir2] >gp:[GI:g142695] [LN:BACCOBA] [AC:M62881]


[PN:S-adenosyl-L-methionine:uroporphyrinogen III] [GN:COBA] [ER:Bacillus


megaterium] [SR:Bacillus megaterium DNA] [DB:genpept-bct1] [DE:Bacillus


megaterium S-adenosy-L-methionine:uroporphyrinogen III methyltransferase


(COBA) gene, complete cds.] [NT:ATCC #1078] [LE:119] [RE:835] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_38876_f2_481
1196
4968
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3906718_f1_67
1197
4969
1065
354
747
5.2e-74










Description


pir:[LN:H69789] [AC:H69789] [PN:L-iditol 2-dehydrogenase, homolog


ydjL:sorbitol dehydrogenase homolog] [GN:ydjL] [CL:alcohol


dehydrogenase:long-chain alcohol dehydrogenase homology] [OR:Bacillus


subtilis] [EC:1.1.1.14] [DB:pir1] >gp:[GI:d1023636:g25220161 [LN:AB007638]


[AC:AB007638] [PN:dehydrogenase] [GN:ydjL] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:Marburg 168) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA containing gutA to cotA region, 48 degree.]


[NT:putative] [LE:9403] [RE:10443] [DI:complement]


>gp:[GI:e1182603:g2632937] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydjL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21):from 600701 to 813890.] [NT:similar to


L-iditol 2-dehydrogenase] [LE:76928] [RE:779681 [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3909376_c2_1681
1198
4970
396
131
244
1.0e-20










Description


pir:[LN:H64716] [AC:H64716] [PN:ABC transporter, ATP-binding protein]


[CL:ATP-binding cassette homology] [OR:Helicobacter pylori] [DB:pir2]


>gp:[GI:g2314761] [LN:AE000655] [AC:AE000655:AE000511] [PN:ABC transporter,


ATP-binding protein (abc)] [GN:HP1576] [OR:Helicobacter pylori 26695]


[DB:genpept-bct2] [DE:Helicobacter pylori 26695 section 133 of 134 of the


complete genome.] [NT:similar to GB:L42023 SP:P44785 PID:1005459] [LE:1828]


[RE:2811] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3910675_f3_1222
1199
4971
234
77
57
0.0048










Description


gp:[GI:g3293452] [LN:AF069160] [AC:AF069160] [PN:NADH dehydrogenase 1]


[FN:respiratory enzyme] [OR:Mitochondrion Aphidius ervi] [SR:Aphidius ervi]


[DB:genpept-inv1] [DE:Aphidius ervi NADH dehydrogenase 1 gene, mitochondrial


gene encoding mitochondrial protein, partial cds.] [LE:<1] [RE:>465]


[DI:direct] >gp:[GI:g3293458] [LN:AF069163] [AC:AF069163] [PN:NADH


dehydrogenase 1] [FN:respiratory enzyme] [OR:Mitochondrion Aphidius picipes]


[SR:Aphidius picipes] [DB:genpept-inv1] [DE:Aphidius picipes NADH


dehydrogenase 1 gene, mitochondrial gene encoding mitochondrial protein,


partial cds.] [LE:<1] [RE:>465] [DI:direct] >gp:[GI:g3293460] [LN:AF069164]


[AC:AF069164] [PN:NADH dehydrogenase 1] [FN:respiratory enzyme]


[OR:Mitochondrion Aphidius pisivorus] [SR:Aphidius pisivorus]


[DB:genpept-inv1] [DE:Aphidius pisivorus NADH dehydrogenase 1 gene,


mitochondrial gene encoding mitochondrial protein, partial cds.] [LE:<1]


[RE:>465] [DI:direct] >gp:[GI:g3293464] [LN:AF069166] [AC:AF069166] [PN:NADH


dehydrogenase 1] [FN:respiratory enzyme] [OR:Mitochondrion Aphidius sonchi]


[SR:Aphidius sonchi] [DB:genpept-inv1] [DE:Aphidius sonchi NADH


dehydrogenase 1 gene, mitochondrial gene encoding mitochondrial protein,


partial cds.] [LE:<1] [RE:>465] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3923842_c2_1832
1200
4972
891
296
876
1.1e-87










Description


gp:[GI:g4959402] [LN:AF115391] [AC:AF115391] [PN:putative ribose transporter


RbsU] [GN:rbsU] [OR:Lactobacillus sakei] [DB:genpept-bct2] [DE:Lactobacillus


sakei LaaA (laaA) gene, partial cds; LaaB (laaB), putative acetate kinase


AckA (ackA), LaaC (laaC) genes, complete cds; rbs operon, complete sequence;


and LaaE (laaE) gene, partial cds.] [LE:3130] [RE:4014] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3928162_f2_665
1201
4973
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3928416_f1_170
1202
4974
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3933177_f2_683
1203
4975
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3941078_f1_114
1204
4976
324
107
110
1.6e-06










Description


pir:[LN:C69845] [AC:C69845] [PN:hypothetical protein yjbS] [GN:yjbS]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183188:g2633522] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:49925] [RE:50125] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3941436_f1_6
1205
4977
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3953400_f1_314
1206
4978
195
64
49
0.017










Description


sp:[LN:RFA1_KLEPN] [AC:Q484751 [GN:RFBA] [OR:KLEBSIELLA PNEUMONIAE]


[DE:O-ANTIGEN EXPORT SYSTEM PERMEASE PROTEIN RFBA] [SP:Q48475]


[DB:swissprot] >pir:[LN:560882] [AC:560882] [PN:integral membrane O-antigen


translocator protein rfbA] [GN:rfbA] [CL:integral membrane O-antigen


translocator protein rfbA] [OR:Klebsiella pneumoniae] [DB:pir2]


>gp:[GI:g567182] [LN:KPNRFBA] [AC:L31775] [PN:integral membrane O-antigen


translocator] [GN:wzm] [OR:Klebsiella pneumoniae] [DB:genpept-bct2]


[DE:Klebsiella pneumoniae integral membrane O-antigen translocator protein


(wzm) and ATP-binding protein (wzt) genes, complete cds; and WbbM (wbbM)


gene, partial cds.] [NT:similar to kpsM (E. coli), bexA (H. influenzae),]


[LE:324] [RE:1103] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4004643_f3_1285
1207
4979
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4069643_c3_2243
1208
4980
480
159
160
8.2e-12










Description


gp:[GI:e1310302:g3294247] [LN:SC7C7] [AC:AL031031] [PN:hypothetical protein


SC7C7.14] [GN:SC7C7.14] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 7C7.] [NT:5C7C7.14, unknown, len:161 aa]


[LE:24125] [RE:24610] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4079552_f2_696
1209
4981
630
209
87
0.0012










Description


gp:[GI:g252560] [LN:54406852] [AC:S44069] [GN:VP4/VP2] [OR:Hepatitis A


virus] [SR:Hepatitis A virus LSH/S] [DB:genpept-vrl] [DE:VPl . . . 3C/3D


[hepatitis A virus HAy, LSH/S, Genomic, 6 genes, 2GGnt, segment 2 of 7].]


[NT:This sequence comes from FIG. 3.] [LE:1] [RE:266] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4079626_f1_336
1210
4982
192
63
70
0.018










Description


sp:[LN:UTMP_BOVIN] [AC:P46201] [OR:BOS TAURUS] [SR:,BOVINE] [DE:UTERINE MILK


PROTEIN PRECURSOR (UTMP)] [SP:P46201] [DB:swissprot] >gp:[GI:g438481]


[LN:BOVSPIS] [AC:L22095] [PN:serine proteinase inhibitor precursor] [OR:Bos


taurus] [DB:genpept-mam] [DE:Bos taurus uterine milk protein precursor,


mRNA, complete cds.] [NT:uterine milk protein] [LE:19] [RE:1398] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4084635_f2_483
1211
4983
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4084717_f3_961
1212
4984
621
206
110
0.00027










Description


pir:[LN:B70045] [AC:B70045] [PN:hypothetical protein yvpB] [GN:yvpB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186182:g2636007] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvpB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [LE:189121] [RE:189873] [DI:direct]


>gp:[GI:g2618863] [LN:AF017113] [AC:AF017113] [PN:YvpB] [GN:yvpB]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 300–304


degree genomic sequence.] [LE:37960] [RE:38712] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4093932_f1_69
1213
4985
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4094703_c1_1446
1214
4986
2022
673
224
3.7e-21










Description


pir:[LN:B70001] [AC:B70001] [PN:ABC transporter (permease) homolog ytsD]


[GN:ytsD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185910:g2635521]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytsD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21):from 2997771 to 3213410.] [NT:similar to ABC transporter


(permease)] [LE:110708] [RE:112648] [DI:complement] >gp:[GI:g2293178]


[LN:AF008220] [AC:AF008220] [PN:YtsD] [GN:ytsD] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to NADH dehydrogenase] [LE:67779] [RE:69719] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_40966_c3_2016
1215
4987
1626
541





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4098518_f1_48
1216
4988
711
236
121
5.8e-08










Description


sp:[LN:ARP_PLAFA] [AC:P04931] [OR:PLASMODIUM FALCIPARUM] [DE:ASPAPAGINE-RICH


PROTEIN (AG319) (ARP) (FRAGMENT)] [SP:PO4931] [DB:swissprot]


>pir:[LN:A23770] [AC:A23770] [PN:asparagine-rich protein] [OR:Plasmodium


falciparum] [DB:pir2] >gp:[GI:g160092] [LN:PFAARP] [AC:M24328:X03716]


[PN:asparagine-rich protein] [GN:Ag319] [OR:Plasmodium falciparum]


[SR:Plasmodium falciparum (Ghanaian isolate NF7) asexual bloodstage]


[DB:genpept-inv1] [DE:Plasmodium falciparum asparagine-rich protein (ARP),


partial cds.] [LE:1] [RE:1612] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4100453_c3_2260
1217
4989
1044
347
329
1.0e-20










Description


sp:[LN:DEGS_BACBR] [AC:P54663] [GN:DEGS] [OR:BACILLUS BREVIS] [EC:2.7.3.-]


[DE:SENSOR PROTEIN DEGS,] [SP:P54663] [DB:swissprot] >pir:[LN:I39834]


[AC:I39834] [PN:protein kinase] [GN:degS] [CL:regulatory protein degS]


[OR:Bacillus brevis] [DB:pir2] >gp:[GI:g710495] [LN:BACDEGSU] [AC:L15444]


[PN:protein kinase] [GN:degS] [OR:Brevibacillus brevis] [SR:Bacillus brevis


(strain Alk36) DNA] [DB:genpept-bct2] [DE:Bacillus brevis protein kinase


(degs) gene, complete cds;transcriptional activator protein (degU) gene,


complete cds.] [NT:putative] [LE:398] [RE:1558] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4100938_c2_1860
1218
4990
534
177
293
1.1e-25










Description


sp:[LN:GUDT_BACSU] [AC:P42237] [GN:YCBE] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


GLUCARATE TRANSPORTER] [SP:P42237] [DB:swissprot] >pir:[LN:H69752]


[AC:H69752] [PN:probalble glucarate transporter] [GN:ycbE] [CL:hexuronate


transporter] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1007040:g709999]


[LN:BACYCB20] [AC:D30808] [PN:glucarate dehydratase] [GN:ycbE] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168TrpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA around 20 degrees region of chromosome containing


yckA-T genes.] [LE:3924] [RE:5291] [DI:direct] >gp:[GI:e1182200:g2632534]


[LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycbE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21):from 194651 to 415810.] [NT:similar to glucarate transporter]


[SP:P42237] [LE:75738] [RE:77105] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4110712_c1_1353
1219
4991
591
196





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4112527_f2_563
1220
4992
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4112788_c1_1497
1221
4993
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4148428_f1_160
1222
4994
1149
382
528
8.3e-51










Description


sp:[LN:ADH_ALCELT] [AC:P14940] [GN:ADH] [OR:ALCALIGENES EUTROPHUS]


[EC:1.1.1.1] [DE:ALCOHOL DEHYDROGENASE,] [SP:P14940] [DB:swissprot]


>pir:[LN:A30196] [AC:A30196] [PN:probable alcohol dehydrogenase,]


[CL:alcohol dehydrogenase:long-chain alcohol dehydrogenase homology]


[OR:Alcaligenes eutrophus] [EC:1.1.1.1] [DB:pirl] >gp:[GI:g141900]


[LN:AFAADH] [AC:J03362] [OR:Ralstonia eutropha] [SR:A. eutrophus (strain H16)


DNA, clone SR18] [DB:genpept-bct1] [DE:A. eutrophus alcohol dehydrogenase


(ADH) gene, complete cds.] [NT:alcohol dehydrogenase (EC 1.1.1.1)] [LE:458]


[RE:1558] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4164026_f2_793
1223
4995
162
53
118
9.1e-09










Description


pir:[LN:S68609] [AC:S68609] [PN:recombinase Sin] [CL:transposase repressor]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g495089] [LN:STASINA]


[AC:L23109] [PN:recombinase] [GN:sin] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus DNA; Transposon Tn4002 (transposable elemen]


[DB:genpept-bct1] [DE:Staphylococcus aureus recombinase (sin) gene, complete


cds.] [NT:putative] [LE:389] [RE:997] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4167842_f2_530
1224
4996
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4179635_c3_2003
1225
4997
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4303377_f2_610
1226
4998
270
89
81
0.0019










Description


gp:[GI:g4049784] [LN:AF063866] [AC:AF063866] [PN:ORF MSV234 hypthetical


protein] [GN:MSV234] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB genpept-vrl] [DE:[Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:201477] [RE:201830] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4329453_c1_1533
1227
4999
336
111
220
3.6e-18










Description


pir:[LN:G69781] [AC:G69782.] [PN:thioredoxin homolog ydfQ] [GN:ydfQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020138:g1881358] [LN:AB001488]


[AC:AB001488] [GN:ydfQ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:SIMILAR TO


THIOREDOXIN.] [LE:131947] [RE:132285] [DI:direct] >gp:[GI:e1182517:g2632851]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydfQ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [NT:similar to thioredoxin] [LE:195693]


[RE:196031] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4334818_f2_854
1228
5000
1566
521
111
0.018










Description


pir:[LN:D71618] [AC:D71618] [PN:hypothetical protein PFB0285c] [GN:PFB0285c


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845144] [LN:AE001385]


[AC:AE001385:AE001362] [PN:hypothetical protein] [GN:PFB0285c]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 22 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:303] [RE:4613]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4336088_c1_2078
1229
5001
624
207
283
7.6e-25










Description


pir:[LN:F69877] [AC:F69877] [PN:uroporphyrin-III C-methyltransferase


homolog ylnF] [GN:ylnF] [CL:Aquifex aeolicus siroheme synthase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e332189:g2462962] [LW:BSPYREYLO]


[AC:AJ000974] [PN:YlnF protein] [GN:ylnF] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis pyrE to yloA gene region.] [LE:5769]


[RE:6257] [DI:direct] >gp:[GI:e1185155:g2633936] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:ylnF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to uroporphyrin-III


C-methyltransferase] [LE:36582] [RE:37070] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4379763_f3_1048
1230
5002
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4392767_c1_1619
1231
5003
435
144
196
8.0e-15










Description


gp:[GI:e1314293:g3395543] [LN:SC4A2] [AC:AL031182] [PN:putative sugar


transferase] [GN:SC4A2.10c] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 4A2.] [NT:SC4A2.10c, probable sugar


transferase, len:478;] [LE:9579] [RE:11015] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4459375_f2_830
1232
5004
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4487550_f3_980
1233
5005
1707
568
1408
4.7e-144










Description


pir:[LN:D69748] [AC:D69748:140419] [PN:amino acid transporter homolog ybeC]


[GN:ybeC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1034075:g3599634]


[LN:AB006424) [AC:AB006424] [GN:ybeC] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic


DNA, 70 kb region between 17 and 23 degree.] [LE:34338] [RE:35957]


[DI:direct] >gp:[GI:e1182164:g2632498] [LN:BSUB0002] [AC:Z99105:AL009126]


[GN:ybeC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 2 of 21):from 194651 to 415810.]


[NT:similar to amino acid transporter] [LE:36687] [RE:38306] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4491713_f2_533
1234
5006
1542
513
416
6.1e-39










Description


pir:[LN:F64554] [AC:F64554] [PN:guanosine pentaphosphate phosphohydrolase]


[OR:Helicobacter pylori] [DB:pir2] >gp:[GI:g2313368] [LN:AE000546]


[AC:AE000546:AE000511] [PN:guanosine pentaphosphate phosphohydrolase]


[GN:HP0278] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 24 of 134 of the complete genome.]


[NT:similar to GB:M87049 SP:P25552 GB:M83316 PID:148183] [LE:6964] [RE:8418]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4553166_f3_1122
1235
5007
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4574012_f1_208
1236
5008
1080
359
600
2.0e-58










Description


pir:[LN:JN0500] [AC:JN0500:S34967] [PN:dihydroorotate oxidase, ,


mitochondrial:dihydroorotate dehydrogenase] [GN:dhod] [CL:dihydroorotate


oxidase] [OR:Drosophila melanogaster] [EC:1.3.3.1] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4662_f2_689
1237
5009
318
105
84
0.0046










Description


gp:[GI:g4049856] [LN:AF063866] [AC:AF063866] [PN:ORF MSV064 hypothetical


protein] [GN:MSVOG4] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB genpept-vrl] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:64316] [RE:65158] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4687705_c2_1841
1238
5010
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4687752_c1_1514
1239
5011
1185
394
773
9.1e-77










Description


pir:[LN:F69863] [AC:F69863] [PN:aspartate aminotransferase homolog ykrV]


[GN:ykrV] [CL:aspartate transaminase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184948:g2633729] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykrV]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to


aspartate aminotransferase] [LE:30317] [RE:31513] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4689390_c3_2124
1240
5012
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4694163_c2_1791
1241
5013
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_3694652_c3_2199
1242
5014
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4695451_f2_864
1243
5015
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4698428_c2_1705
1244
5016
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4705077_f2_880
1245
5017
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4713377_f2_618
1246
5018
447
148
108
3.4e-05










Description


gp:[GI:e1407826:g4493896] [LN:PFMAL3P2] [AC:AL034558] [GN:MAL3P2.18]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P2, complete sequence.]


[NT:predicted using hexExon; MAL3P2.18 (PFC0245c),] [LE:84094] [RE:95895]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4719775_c3_2182
1247
5019
744
247
434
7.6e-41










Description


sp:[LN:YWAC_BACSU] [AC:P39583] [GN:YWAC:IPA-7D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 24.6 KD PROTEIN IN DAE-TYRZ INTERGENIC REGION] [SP:P39583]


[DB:swissprot] >pir:[LN:S39662] [AC:539662:C70050]


[PN:GTP-pyrophosphokinase homolog ywaC:protein ipa-7d] [GN:ywaC] [CL:GTP


pyrophosphokinase related protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g413931] [LN:BSGENR] [AC:X73124] [GN:ipa-7d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39583]


[LE:6981] [RE:7613] [DI:direct] >gp:[GI:e1186347:g2636383] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywaC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:alternate gene name:ipa-7d; similar to]


[SP:P39583] [LE:150346] [RE:150978] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4719827_c3_1986
1248
5020
417
138





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4720317_f2_475
1249
5021
1257
418
1659
1.2e-170










Description


gp:[GI:g4574233] [LN:AF106849] [AC:AF106849] [PN:FmhA] [GN:fmhA]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus FmhA


(fmhA) gene, complete cds.] [NT:similar to Staphylococcus aureus FemA and


FemB] [LE:201] [RE:1451] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4723510_c2_1759
1250
5022
2661
886
2374
2.0e-246










Description


sp:[LN:PODK_CLOSY] [AC:P22983]LGN:PPDK] [OR:CLOSTRIDIUM SYMBIOSUM]


[SR:,BACTEROIDES SYMBIOSUS] [EC:2.7.9.1] [DE:(DIKINASE)] [SP:P22983]


[DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





A17503000985_4725068_c3_2219
1251
5023
645
214
605
5.8e-59










Description


pir:[LN:D69670] [AC:D69670] [PN:glycine betaine/carnitine/choline ABC


transporter (membrane p) opuCB] [GN:opuCB] [CL:glycine


betaine/carnitine/choline ABC transporter] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g2271390] [LN:AF009352] [AC:AF009352] [PN:transmembrane protein]


[GN:opuCB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


osmoprotectant transport system OpuC includingATPase (opuCA), transmembrane


protein (opuCB), osmoprotectant binding protein precursor (opuCC) and


transmembrane protein (opuCD) genes, complete cds.] [NT;OpuCB; part of the


osmoprotectant transport system] [LE:2025] [RE:2678] [DI:direct]


>gp:[GI:e1186070:g2635895] [LN:BSUB0018] [AC:Z99121:AL009126] [PN:glycine


betaine/carnitine/choline ABC] [GN:opuCB] [FN:high affinity transport of


glycine betaine,] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genone (section 18 of 21): from 3399551 to 3609060.]


[NT:alternate gene name: yvbD] [LE:68697] [RE:69350] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4726636_c1_1543
1252
5024
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4727187_c2_1702
1253
5025
2889
962
617
7.4e-58










Description


sp:[LN:PIP_LACLA] [AC:P49022] [GN:PIP] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [DE:PHAGE INFECTION PROTEIN]


[SP:P49022] [DB:swissprot] >gp:[GI:g308861] [LN:LACPIP] [AC:L14679] [GN:pip]


[FN:required for phage infection] [OR:Lactococcus lactis] [SR:Lactococcus


lactis (strain C2, sub_species lacis) DNA] [DB:genpept-bct1]


[DE:Lactococcus lactis pip and gerC2 genes, complete cds's, and rrggene, 5′


end of cds.] [NT:GTG start codon] [LE:391] [RE:3096] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4728187_c1_1365
1254
5026
234
77










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4735937_f3_1114
1255
5027
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4737550_c3_2248
1256
5028
759
252
387
7.3e-36










Description


gp:[GI:g4433637] [LN:AF029224] [AC:AF029224:AF029225] [PN:NirR] [GN:nirR]


[FN:involved in nitrite reduction] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus nir and nar operons, complete


sequences.] [LE:1184] [RE:1906] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4777217_c3_2257
1257
5029
1569
522
2425
7.9e-252










Description


gp:[GI:e1429596:g4756152] [LN:A67161] [AC:A67161] [FN:NARH GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:7804] [RE:9381] [DI:direct]


>gp:[GI:g3929523] [LN:AF029224] [AC:AF029224:AF029225] [PN:NarH] [GN:narH]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


nitrate reductases NRA] [LE:9989] [RE:11566] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4787807_f3_984
1258
5030
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4814682_f3_1288
1259
5031
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4870907_f1_195
1260
5032
231
76





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4875316_c1_1545
1261
5033
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4875760_f1_255
1262
5034
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4876387_c3_2099
1263
5035
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4876932_c2_1733
1264
5036
249
82
74
0.013










Description


gp:[GI:g1255424] [LN:CELC33G8] [AC:U53154] [GN:C33G8.3] [OR:Caenorhabditis


elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans cosmid C33G8.]


[LE:27678:27899:28087] [RE:27848:27952:28290] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4878312_c2_1648
1265
5037
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4882893_c3_2012
1266
5038
1209
402
244
1.0e-27










Description


gp:[GI:d1039027:g4512424] [LN:AB017508] [AC:AB017508] [GN:secY] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, complete cds.]


[NT:secY homologue (identity of 70% to B. subtilis )] [LE:22481] [RE:23773]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4891002_c2_1834
1267
5039
1116
371
671
5.8e-66










Description


pir:[LN:A43577] [AC:A43577] [PN:regulatory protein pfoR] [OR:Clostridium


perfringens] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_4980378_c1_1635
1268
5040
537
178
578
4.2e-56










Description


gp:[GI:g4096799] [LN:SCU40158] [AC:U40158] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus response regulator-like


protein (orfx) gene, partial cds.] [NT:orfx; function unknown; similar to


response] [LE:<1] [RE:560] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5117137_c2_1827
1269
5041
459
152
499
9.8e-48










Description


pir:[LN:G70069] [AC:G70069] [PN:capsular polyglutamate biosynthesis homolog


ywtA] [GN:ywtA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184495:g2636114]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywtA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21):from 3597091 to 3809700.] [NT:similar to capsular polyglutamate


biosynthesis] [LE:100949] [RE:101398] [DI:complement]


>gp:[GI:e308089:g1894766] [LN:BSZ92954] [AC:Z92954] [GN:ywtA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis yws [A, B, C, D, E, F, G] and gerBC


genes.] [NT:product highly similar to Bacillus anthracis CapC] [LE:1084]


[RE:1533] [DI:direct] >gp:[GI:e1184495:g2636114] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywtA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:similar to capsular polyglutamate biosynthesis]


[LE:100949] [RE:101398] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5128425_f2_821
1270
5042
1878
625
477
2.1e-45










Description


pir:[LN:F69848] [AC:F69848] [PN:transcription antiterminator BglG family


homolog yjdC] [GN:yjdC] [CL:phosphotransferase system mannitol-specific


enzyme II factor III homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183220:g2633554] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:yjdC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to


transcriptional antiterminator (BglG] [LE:75712] [RE:77658] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5133562_f2_656
1271
5043
222
73
180
6.3e-14










Description


pir:[LN:F70041] [AC:F70041] [PN:probable mercuric ion-binding protein


yvgY:periplasmic mercuric ion-binding protein merP homolog] [GN:yvgY]


[CL:mercuric resistance operon regulatory protein:heavy-metal-associated


homology] [OR:Bacillus subtilis] [DB:pirl] >gp:[GI:e1186039:g2635864]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvgY] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to mercuric transport


protein] [LE:43125] [RE:43334] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5136002_c2_1691
1272
5044
366
121
136
2.9e-09










Description


pir:[LN:C70043] [AC:C70043] [PN:hypothetical protein yvlA] [GN:yvlA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186201:g2636026] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvlA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [LE:207957] [RE:208283] [DI:complement]


>gp:[GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [LE:10417]


[RE:10743] [DI:complement] >gp:[GI:g2618844] [LN:AF017113] [AC:AF017113]


[PN:YvlA] [GN:yvlA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis 300–304 degree genomic sequence.] [LE:19550] [RE:19876] [DI:direct]


>gp:[GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [LE:10417]


[RE:10743] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5203452_c3_1989
1273
5045
579
192
398
5.0e-37










Description


sp:[LN:HIS5_LACLA] [AC:Q02132] [GN:HISH] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:2.4.2.-] [DE:ANIDOTRANSFERASE


HISH,] [SP:Q02132] [DB:swissprot] >pir:[LN:I45734] [AC:I45734] [PN:HisH]


[CL:amidotransferase hisH] [OR:Lactococcus lactis subsp. lactis] [DB:pir2]


>gp:[GI:g2565145] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:HisH]


[GN:hish] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:aminotransferase] [LE:7295]


[RE:7903] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5281568_f3_1043
1274
5046
504
167
330
8.0e-30










Description


pir:[LN:C64897] [AC:C64897] [PN:probable phosphinothricin


N-acetyltransferase,] [CL:phosphinothricin N-acetyltransferase]


[OR:Escherichia coli] [EC:2.3.1.-] [DB:pir2] >gp:[GI:g1787719] [LN:AE000241]


[AC:AE000241:U00096] [PN:putative resistance protein] [GN:b1448]


[FN:putative transport; Drug/analog sensitivity] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 131 of 400 of the


complete genome.] [NT:f172; 38 pct identical (3 gaps) to 169 residues of]


[LE:9570] [RE:10088] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5290675_c3_2108
1275
5047
405
134
411
2.1e-38










Description


sp:[LN:PAND_BACSU] [AC:P52999] [GN:PAND] [OR:BACILLUS SUBTILIS]


[EC:4.1.1.11] [DE:(DECARBOXYLASE)] [SP:P52999] [DB:swissprot]


>pir:[LN:A69672] [AC:A69672] [PN:aspartate 1-decarboxylase panD] [GN:panD]


[CL:aspartate 1-decarboxylase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g1146242] [LN:BACYPIA] [AC:L47709] [PN:aspartate 1-decarboxylase]


[GN:panD] [FN:pantothenic acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:4.1.1.11] [DE:Bacillus subtilis (clone YAC15-6B)


ypiABF genes, qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG


gene, ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene,


complete cds's.] [NT:48.3% of identity to the Escherichia coli aspartate]


[LE:14990] [RE:15373] [DI:direct] >gp:[GI:e1183686:g2634659] [LN:BSUB0012]


[AC:Z99115:AL009126] [PN:aspartate 1-decarboxylase] [GN:panD]


[FN:pantothenate biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.1.11] [DE:Bacillus subtilis complete genome (section 12 of 21):from


2195541 to 2409220.] [SP:P52999] [LE:156294] [RE:156677] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5314077_c1_1448
1276
5048
1593
530
1036
1.2e-104










Description


sp:[LN:YIDK_ECOLI] [AC:P31448] [GN:YIDK] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 62.1 KD PROTEIN IN EMRD-GLVG INTERGENIC REGION] [SP:P31448]


[DB:swissprot] >pir:[LN:H65169] [AC:H65169] [PN:hypothetical 62.1 kD


protein in ilvo-ibpb intergenic region] [GN:yidK 3 [OR:Escherichia coli]


[DB:pir2] >gp:[GI:g290528] [LN:ECOUW82] [AC:L10328] [GN:f571] [FN:unknown]


[OR:Escherichia coli] [SR:Escherichia coli K12 strain MG1655; lambda clones


EC14-52] [DB:genpept-bct1] [DE:E. coli; the region from 81.5 to 84.5


minutes.] [NT:similar to glucose transport proteins] [LE:47795] [RE:49510]


[DI:complement] >gp:[GI:g1790113] [LN:AE000445] [AC:AE000445:U00096]


[PN:putative cotransporter] [GN:yidK] [FN:putative transport; Not


classified] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 335 of 400 of the complete genome.] [NT:f571; 100 pct


identical to YIDK_ECOLI SW:] [LE:5576] [RE:7291] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_53413_f2_855
1277
5049
1602
533
424
8.7e-40










Description


pir:[LN:H64532] [AC:H64532] [PN:2′,3′-cyclic-nucleotide


2′-phosphodiesterase, precursor] [GN:HP0104] [CL:2′,3′-cyclic-nucleotide


2′-phosphodiesterase:2′,3′-cyclic-nucleotide 2′-phosphodiesterase


homology:phosphoesterase core homology] [OR:Helicobacter pylori]


[EC:3.1.4.16] [DB:pir1] >gp:[GI:g2313187] [LN:AE000532]


[AC:AE000532:AE000511] [PN:2′,3′-cyclic-nucleotide 2′-phosphodiesterase]


[GN:HP0104] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 10 of 134 of the complete genome.]


[NT:similar to GB:L42023 SP:P44764 PID:1004048] [LE:3594] [RE:5339]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5369212_c3_2196
1278
5050
1509
502
430
5.4e-40










Description


sp:[LN:TAGE_BACSU] [AC:P13484] [GN:TAGE:RODD:GTAA] [OR:BACILLUS SUBTILIS]


[EC:2.4.1.52] [DE:(EC 2.4.1.52) (TEICHOIC ACID BIOSYNTHESIS PROTEIN E)]


[SP:P13484] [DB:swissprot] >pir:[LN:506048] [AC:506048:F69720]


[PN:poly(glycerol-phosphate) alpha-glucosyltransferase, tagE:probable rodD


protein UDP-glucose--polyglycerol phosphate glucosyltransferase tagE]


[GN:tagE:rodD] [OR:Bacillus subtilis] [EC:2.4.1.52] [DB:pir2] [MP:310


degrees] >gp:[GI:g580920] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodD (gtaA)


polypeptide (AA 1–673)] [SP:P13484] [LE:157] [RE:2178] [DI:direct]


>gp:[GI:e1184479:g2636099] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:UDP-glucose:polyglycerol phosphate] [GN:tagE] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] LEC:2.4.1.52]


[DE:Bacillus subtilis complete genome (section 19 of 21):from 3597091 to


3809700.] [NT:alternate gene name:rodD, gtaA, gtaD] [SP:P13484] [LE:80369]


[RE:82390] [DI:complement] >gp:[GI:e1184479:g2636099] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-glucose:polyglycerol phosphate] [GN:tagE]


[FN:teichoic acid biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.4.1.52] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:alternate gene name:rodD, gtaA, gtaD] [SP:P13484]


[LE:80369] [RE:82390] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_54207_c1_1347
1279
5051
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_56693_c1_1418
1280
5052
792
263
778
2.7e-77










Description


gp:[GI:g2058476] [LN:BTU71200] [AC:U71200] [PN:acetoin reductase] [OR:Bos


taurus] [DB:genpept-mam] [DE:Bos taurus acetoin reductase mRNA, complete


cds.] [NT:similar to acetoin reductase of Klebsiella] [LE:51] [RE:824]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_578162_f3_1226
1281
5053
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5867262_c1_1636
1282
5054
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5891075_f2_736
1283
5055
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5907177_f1_392
1284
5056
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5915653_f2‘3789
1285
5057
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_595260_c2_1956
1286
5058
3780
1259
5568
0.0










Description


gp:[GI:e1429593:g4756151] [LN:A67161] [AC:A67161] [FN:NARG GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 1 from Patent


EP0805205.] [NT:unnamed protein product] [LE:4140] [RE:7814] [DI:direct]


>gp:[GI:g3929522] [LN:AF029224] [AC:AF029224:AF029225] [PN:NarG] [GN:narG]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


nir and nar operons, complete sequences.] [NT:similar to Escherichia coli


nitrate reductases NRA] [LE:6325] [RE:9999] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5963300_f2_895
1287
5059
504
167
116
5.6e-06










Description


gp:[GI:d1044460:g5105361] [LN:AP000062] [AC:AP000062] [PN:213aa long


hypothetical protein] [GN:APE1673] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 5/7.] [LE:71354] [RE:71995] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_5988786_f1_391
1288
5060
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6047827_c2_1778
1289
5061
705
234
569
3.8e-55










Description


gp:[GI:g2565161] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:AldB] [GN:aldB]


[OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis unknown


gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown, HisB


(hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:alpha-acetolactate


decarboxylase] [LE:24488] [RE:25198] [DI:direct] >gp:[GI:g1699352]


[LN:582499] [AC:582499] [PN:alpha-acetolactate decarboxylase] [GN:aldB]


[OR:Lactococcus lactis] [SR:Lactococcus lactis NCDO2118 ssp. lactis]


[DB:genpept-bct1] [DE:aldB = alpha-acetolactate decarboxylase [Lactococcus


lactis, ssp. lactis, NCDO2118, Genomic, 840 nt] .] [NT:This sequence comes


from FIG. 2; AldB] [LE:98] [RE:808] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6070938_c1_1477
1290
5062
1773
590
2475
4.0e-257










Description


gp:[GI:g4574121] [LN:AF009415] [AC:AF009415] [PN:choline dehydrogenase]


[GN:cudB] [OR:Staphylococcus xylosus] [DB:genpept-bct2] [DE:Staphylococcus


xylosus choline transporter (cudT), putative regulatory protein (cudC)


glycine betaine aldehyde dehydrogenase (cudA), and choline dehydrogenase


(cudB) genes, complete cds.] [NT:CudB] [LE:4915] [RE:6597] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6101063_c2_1925
1291
5063
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6101542_f2_836
1292
5064
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6132893_c3_2259
1293
5065
462
153





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6136050_c2_1807
1294
5066
246
81
80
0.0033










Description


gp:[GI:g4980536] [LN:AE001692] [AC:AE001692:AE000512] [PN:iron(II) transport


protein A] [GN:TM0050] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 4 of 136 of the complete genome.]


[NT:similar to SP:P33649 PID:414746 PID:606343] [LE:81] [RE:545] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6136527_c1_1463
1295
5067
615
204
618
2.4e-60










Description


pir:[LN:C69877] [AC:C69877] [PN:adenylylsulfate kinase homolog ylnC]


[GN:ylnC] [CL:adenylylsulfate kinase:adenylylsulfate kinase homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e332186:g2462959] [LN:BSPYREYLO]


[AC:AJ000974] [PN:putative adenosine 5-phosphosulfate kinase] [GN:ylnC]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis pyrE to yloA


gene region.] [LE:3535] [RE:4128] [DI:direct] >gp:[GI:e1185152:g2633933]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:ylnC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to adenylylsulfate kinase]


[LE:34348] [RE:34941] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6251592_c2_1940
1296
5068
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6289068_c2_1750
1297
5069
219
72
233
1.0e-18










Description


gp:[GI:g4574118] [LN:AF009415] [AC:AF009415] [PN:choline transporter]


[GN:cudT] [OR:Staphylococcus xylosus] [DB:genpept-bct2] [DE:Staphylococcus


xylosus choline transporter (cudT), putative regulatory protein (cudC),


glycine betaine aldehyde dehydrogenase (cudA), and choline dehydrogenase


(cudB) genes, complete cds.] [NT:CudT] [LE:811] [RE:2433] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6369688_f2_562
1298
5070
915
304
130
5.9e-06










Description


gp:[GI:g4262225] [LN:ATAC00G200] [AC:AC006200] PN:putative phosphatidic


acid phosphatase] [GN:F10A8.6] [OR:Arabidopsis thaliana] [SR:thale cress]


[DB:genpept-pln2] [DE:Arabidopsis thaliana chromosome II BAC F10A8 genomic


sequence, complete sequence.] [LE:16778] [RE:17686] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_64442202_f3_1033
1299
5071
1050
349
310
1.0e-27










Description


sp:[LN:YYAD_BACSU] [AC:P37520] [GN:YYAD] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 37.7 KD PROTEIN IN RPSF-SPO0J INTERGENIC REGION]


[SP:P37520] [DB:swissprot] >pir:[LN:I40448] [AC:I40448:S66018:C70084:S18084]


[PN:conserved hypothetical protein yyaD (replication origin region)]


[GN:yyaD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005766:g467378]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:51420]


[RE:52436] [DI:complement] >gp:[GI:g580907] [LN:BSORIGS] [AC:X62539]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genes rpmH, rnpA,


50kd, gidA and gidB.] [NT:unnamed protein product] [SP:P37520] [LE:10964]


[RE:11980] [DI:direct] >gp:[GI:e1184820:g2636641] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yyaD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:similar to hypothetical proteins from B.


subtilis] [SP:P37520] [LE:203352] [RE:204368] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_651527_c1_1369
1300
5072
732
243
359
6.7e-33










Description


sp:[LN:HIS4_SYNY3] [AC:P74561] [GN:HISA:SLR0652] [OR:SYNECHOCYSTIS SP]


[SR:PCC 6803,] [EC:5.3.1.16] [DE:ISOMERASE.] [SP:P74561] [DB:swissprot]


>pir:[LN:S76756] [AC:S76756] [PN:hypothetical protein]


[CL:N-(5′-phospho-D-ribosylformimino)-5-amino-1-


(5′′-phosphoribosyl)-4-imidazolecarboxamide isomerase] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1019401:g1653757] [LN:D90916] [AC:D90916:AB001339]


[PN:phosphorybosilformimino-5-amino-] [GN:hisA] [OR:Synechocystis sp.]


[SR:Synechocystis sp. (strain:PCC6803) DNA] [DB:genpept-bct1]


[DE:Synechocystis sp. PCC6803 complete genome, 26/27, 3270710–3418851.]


[NT:ORF_ID:slr0652] [LE:48572] [RE:49342] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6522262_c2_1805
1301
5073
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6642792_f3_978
1302
5074
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6662875_f1_382
1303
5075
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6678507_f1_253
1304
5076
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6745327_f3_1336
1305
5077
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6772250_c1_1380
1306
5078
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6829635_c2_1695
1307
5079
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6829812_c1_1542
1308
5080
948
315
795
4.2e-79










Description


gp:[GI:g4959404] [LN:AF115391] [AC:AF115391] PN:ribokinase RbsK] [GN:rbsK]


[OR:Lactobacillus sakei] [DB:genpept-bct2] [DE:Lactobacillus sakei LaaA


(laaA) gene, partial cds; LaaB (laaB), putative acetate kinase AckA (ackA),


LaaC (laaC) genes, complete cds; rbs operon, complete sequence; and LaaE


(laaE) gene, partial cds.] [LE:4450] [RE:5358] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6837938_f1_376
1309
5081
3561
1186
198
2.1e-14










Description


sp:[LN:CDRl_HUMAN] [AC:P51861] [GN:CDR1] LOR:HOMO SAPIENS] [SR:,HUMAN]


[DE:CEREBELLAR-DEGENERATION-RELATED ANTIGEN 1 (CDR34)] [SP:P51861]


[DB:swissprot] >pir:[LN:A29770] [AC:A29770:A35640] [PN:cerebellar


degeneration-related protein] [GN:CDR1:CDR] [OR:Homo sapiens] [SR:, man]


[DB:pir2] [MP:Xq27.1–Xq27.2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6844012_c2_1748
1310
5082
1344
447
589
2.9e-57










Description


sp:[LN:DCUA_ECOLI] [AC:P04539] [GN:DCUA:GENA] [OR:ESCHERICHIA COLI]


[DE:ANAEROBIC C4-DICARBOXYLATE TRANSPORTER DCUA] [SP:P04539] [DB:swissprot]


>pir:[LN:QQEC94] [AC:S56366:S57340:H65223:A04471:S08589] [PN:dicarboxylate


membrane-transporter protein A:anaerobic c4-dicarboxylate transporter


dcua:aspartase membrane transport protein genA] [GN:dcuA:genA]


[CL:dicarboxylate membrane-transporter protein A] [OR:Escherichia coli]


[DB:pir1] [MP:94 min] >gp:[GI:g510888] [LN:ECDUCA] [AC:X79887]


[PN:dicarboxylate membrane-transporter protein] [GN:dcuB] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:E. coli dcuA gene.] [SP:P04539] [LE:129]


[RE:1430] [DI:direct] >gp:[GI:g5369821] [LN:ECOUW93] [AC:U14003] [GN:genA]


[FN:membrane transport of aspartase] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes.]


[LE:56300] [RE:57601] [DI:complement] >gp:[GI:g1790580] [LN:AE000486]


[AC:AE000486:U00096] [PN:anaerobic dicarboxylate transport] [GN:dcuA]


[FN:transport; Transport of small molecules:] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 376 of 400 of the


complete genome.] [NT:f433; 100 pct identical amino acid sequence and]


[LE:6845] [RE:8146] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6897133_f1_415
1311
5083
126
41
75
0.038










Description


gp:[GI:g53061681] [LN:AF160864] [AC:AF160864] [PN:orf256] [GN:orf256]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf62 (CPGN)] [LE:40866] [RE:41636] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_6928_c1_1546
1312
5084
843
280





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7039051_c3_2238
1313
5085
750
249
585
7.6e-57










Description


sp:[LN:YCKJ_BACSU] [AC:P42200] [GN:YCKJ] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


AMINO-ACID ABC TRANSPORTER PERMEASE PROTEIN] [SP:P42200] [DB:swissprot]


>pir:[LN:I40451] [AC:I40451:D69761:552382] [PN:glutamine ABC transporter


(permease) homolog yckJ:ABC-type transport system probable membrane spanning


protein] [GN:yckJ] [CL:histidine permease protein M] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g666982] [LN:BSPAAT] [AC:X77636] [PN:putative membrane


spanning subunit] [GN:ORF2] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis putative amino acid transporter gene.] [NT:potential


ABC-transport system] [SP:P42200] [LE:909] [RE:16131 EDI:direct]


>gp:[GI:e1182312:g2632646] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:yckJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21):from 194651 to 415810.] [NT:similar to


glutamine ABC transporter (permease)] [SP:P42200] [LE:214896] [RE:215600]


[DI:complement] >gp:[GI:e1182327:g2632661] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:yckJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21):


from 402751 to 611850.] [NT:similar to glutamine ABC transporter (permease)]


[SP:P42200] [LE:6796] [RE:7500] [DI:complement] >gp:[GI:d1009628:g1805431]


[LN:D50453] [AC:D50453] [PN:homologue of glutamine transport system]


[GN:yckJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168 trpC2)


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for 25–36 degree region


containing the amyE-srfA region, complete cds.] [LE:89199] [RE:89903]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7227175_c3_2052
1314
5086
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7228517_c3_2197
1315
5087
411
136
191
4.3e-15










Description


pir:[LN:A70556] [AC:A70556] [PN:probable mutator MutT protein or homolog]


[GN:mutT2] [CL:mutT domain homology] [OR:Mycobacterium tuberculosis]


[DB:pir2] >gp:[GI:e317133:g2117198] [LN:MTCI65] [AC:Z95584:AL123456]


[PN:mutT2] [GN:mutT2] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment.50/162.]


[NT:Rv1160, (MTCI65.27), mutT, len:141. Probable] [LE:24794] [RE:25219]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7234627_c1_1580
1316
5088
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7242128_c2_1926
1317
5089
345
114
352
3.7e-32










Description


gp:[GI:e314909:g2073521] [LN:SSK1MECA] [AC:Y09223] [PN:hypothetical protein]


[OR:Staphylococcus sciuri] [DB:genpept-bct1] [DE:S. sciuri mecA gene & ORF's


450, 145 & 179.] [NT:ORF450] [LE:<1] [RE:1351] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7243832_c2_1644
1318
5090
1722
573
684
2.4e-67










Description


gp:[GI:d1044599:g5105500] [LN:AP000062] [AC:AP000062] [PN:558aa long


hypothetical protein] [GN:APE1810] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 5/7.] [NT:motif = ATP/GTP-binding site motif A (P-loop)] [LE:155809]


[RE:157485] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7245377_c1_1534
1319
5091
1002
333
258
3.4e-22










Description


sp:[LN:EST_ACICA] [AC:P18773] [GN:EST] [OR:ACINETOBACTER CALCOACETICUS]


[EC:3.1.1.-] [DE:ESTERASE,] [SP:P18773] [DB:swissprot] >gp:[GI:g303953]


[LN:ACCESTERAS] [AC:M24890:L20754] [PN:esterase] [OR:Acinetobacter


calcoaceticus] [SR:Acinetobacter calcoaceticus ssp. iwoffii (strain RAG-1)


DNA] [DB:genpept-bct1] [DE:Acinetobacter calcoaceticus esterase gene,


complete cds.] [LE:1] [RE:912] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_7301078_c3_2006
1320
5092
465
154
340
7.0e-31










Description


gp:[GI:g3114664] [LN:AF061267] [AC:AF061267] [PN:ATPase component HtxD]


[GN:htxD] [OR:Pseudomonas stutzeri] [DB:genpept-bct2] [DE:Pseudomonas


stutzeri putative alpha-ketoglutarate-dependent hypophosphite dioxygenase


(htxA), binding protein component HtxB (htxB), inner membrane component HtxC


(htxC), ATPase component HtxD (htxD), inner membrane component HtxE (htxE),


putative C-P lyasesubunits HtxF (htxF), HtxG (htxG), and HtxH (htxH) genes,


complete cds; and putative C-P lyase subunit HtxI (htxI) gene, partial cds.]


[NT:putative binding-protein-dependent hypophosphite] [LE:39961] [RE:5021]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_783375_f2_893
1321
5093
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_784387_c3_1970
1322
5094
1425
474
781
1.3e-77










Description


pir:[LN:G71641] [AC:G71641] [PN:dihydrolipoamide dehydrogenase (pdhD)


RP805] [GN:pdhD:RP805] [CL:dihydrolipoamide dehydrogenase:dihydrolipoamide


dehydrogenase homology] [OR:Rickettsia prowazekii] [DB:pir2]


>gp:[GI:e1343076:g3861332] [LN:RPXX04] [AC:AJ235273:AJ235269]


[PN:DIHYDROLIPOAMIDE:DEHYDROGENASE (pdhD)] [GN:RP805] [OR:Rickettsia


prowazekii] [DB:genpept-bct1] [DE:Rickettsia prowazekii strain Madrid E,


complete genome; segment 4/4.] [LE:137655] [RE:139034] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_787677_f2_636
1323
5095
483
160
246
6.4e-21










Description


gp:[GI:g2735506] [LN:SCU96107] [AC:U96107] [PN:SceB precursor] [GN:sceB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


N5,N10-methylenetetrahydromethanopterinreductase homolog, SceB precursor


(sceB) and putative transmembrane protein genes, complete cds, and putative


Na+/H+ antiporter NhaC (nhaC) gene, partial cds.] [NT:major secreted protein]


[LE:1894] [RE:2685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_798838_c3_1987
1324
5096
1260
419
845
2.1e-84










Description


pir:[LN:E70368] [AC:E70368] [PN:histidinol dehydrogenase] [GN:hisD]


[CL:histidinol dehydrogenase:histidinol dehydrogenase homology] [OR:Aquifex


aeolicus] [DB:pir2] >gp:[GI:g2983343] [LN:AE000707] [AC:AE000707:AE000657]


[PN:histidinol dehydrogenase] [GN:hisD] [OR:Aquifex aeolicus]


[DB:genpept-bct2] [DE:Aquifex aeolicus section 39 of 109 of the complete


genome.] [LE:5716] [RE:6996] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_823518_f1_169
1325
5097
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_832561_c3_2102
1326
5098
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_86088_f2_835
1327
5099
369
122
154
3.6e-11










Description


gp:[GI:g2735504] [LN:SCU96107] [AC:U96107] [ER:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus


N5,N10-methylenetetrahydromethanopterinreductase homolog, SceB precursor


(sceB) and putative transmembrane protein genes, complete cds, and putative


Na+/H+ antiporter NhaC (nhaC) gene, partial cds.] [NT:Orf1] [LE:<1] [RE:185]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_860917_f3_1170
1328
5100
201
66
56
0.0095










Description


pir:[LN:A71605] [AC:A71605] [PN:probable integral membrane protein


PFB0845w] [GN:PFB0845w] [OR:Plasmodium falciparum] [DB:pir2]


>gp:[GI:g3845291] [LN:AE001420] [AC:AE001420:AE001362] [PN:predicted


integral membrane protein] [GN:PFB0845w] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv2] [DE:Plasmodium


falciparum chromosome 2, section 57 of 73 of the complete sequence.]


[NT:predicted by GlimmerM] [LE:9688] [RE:10611] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_867255_f1_235
1329
5101
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_882143_c2_1927
1330
5102
255
84





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_891000_c2_1906
1331
5103
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_895253_c3_2019
1332
5104
510
169
303
5.8e-27










Description


pir:[LN:E71960] [AC:E71960] PN:probable peptide methionine sulfoxide


reductase] [GN:jhp0210] [OR:Helicobacter pylori] [SR:strain J99, , strain


J99] [SR:strain J99,] [DB:pir2] >gp:[GI:g4154731] [LN:AE001459]


[AC:AE001459:AE001439] [PN:putative PEPTIDE:METHIONINE SULFOXIDE:REDUCTASE]


[GN:jhp0210] [OR:Helicobacter pylori J99] [DB:genpept-bct2] [DE:Helicobacter


pylori, strain J99 section 20 of 132 of the complete genome.] [NT:similar to


H. pylori 26695 gene HP0224] [LE:4882] [RE:5961] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_901377_c2_1785
1333
5105
327
108





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_901377_f2_596
1334
5106
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_953142_f1_219
1335
5107
954
317
228
5.1e-19










Description


sp:[LN:YOBS_MYCTU] [AC:Q50648] [GN:MTCY227.28C] [OR:MYCOBACTERIUM


TUBERCULOSIS] [DE:HYPOTHETICAL 26.2 KD PROTEIN CY227.28C] [SP:Q50648]


[DB:swissprot] >pir:[LN:D70724] [AC:D70724] [PN:hypothetical protein


Rv2573] [GN:Rv2573] [OR:Mycobacterium tuberculosis] [DB:pir2]


>gp:[GI:e256179:g1478239] [LN:MTCY227] [AC:Z77724:AL123456] [PN:hypothetical


protein Rv2573] [GN:Rv2573] [OR:Mycobacterium tuberculosis]


[DB:genpept-bct1] [DE:Mycobacterium tuberculosis H37Rv complete genome;


segment 114/162.] [NT:Rv2573, (MTCY227.28c), len:246. Unknown but some]


[SP:Q50648] [LE:5598] [RE:6338] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_953930_f2_838
1336
5108
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_961562_c1_1401
1337
5109
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_968800_c2_1796
1338
5110
804
267
1031
4.2e-104










Description


gp:[GI:e244971:g1340128] [LN:SA1234] [AC:X97985] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus orfs 1, 2, 3 & 4.1] [NT:ORF1] [LE:537] [RE:1304]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9766375_f1_90
1339
5111
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9770801_f2_621
1340
5112
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_978965_c3_2055
1341
5113
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_986312_f2_447
1342
5114
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9875333_c1_1552
1343
5115
1533
510
1134
5.1e-115










Description


sp:[LN:DHAL_VIBCH] [AC:P23240] IGN:ALDA] [OR:VIBRIO CHOLERAE] [EC:1.2.1.3]


[DE:ALDEHYDE:DEHYDROGENASE,] [SP:P23240] [DB:swissprot] >gp:[GI:g155276]


[LN:VIBTAGALDA] [AC:M60658] [PN:aldehyde dehydrogenase] [GN:aldA] [OR:Vibrio


cholerae] [SR:V. cholerae DNA] [DB:genpept-bct1] [EC:l.2.1.3] [DE:Vibrio


cholerae aldehyde dehydrogenase gene, complete cds, and tagA gene, 5′ end.]


[LE:419] [RE:1939] [DI:direct] >gp:[GI:g3004925] [LN:AF034434] [AC:AF034434]


[PN:aldehyde dehydrogenase] [GN:aldA] [OR:Vibrio cholerae] [DB:genpept-bct2]


[DE:Vibrio cholerae pathogenicity island, putative transposase, aldehyde


dehydrogenase (aldA), toxR-activated gene A protein (tagA), putative inner


membrane protein, and putative zincmetalloprotease genes, complete cds; and


toxR-activated gene Dprotein (tagD) gene, partial cds.] [NT:AldA] [LE:2388]


[RE:3908] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9928200_f1_189
1344
5116
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9944635_f2_631
1345
5117
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_995300_f1_28
1346
5118
204
67
70
0.048










Description


gp:[GI:g1173895] [LN:PFU41075] [AC:U41075] [PN:p82] rGN:RAP-1]


[OR:Plasmodium falciparum] [SR:malaria parasite strain = IndJ-1 (clone 1 of


Indian isolate J)] [DB:genpept-inv2] [DE:Plasmodium falciparum strain IndJ-1


rhoptry-associated protein 1 (RAP-1) gene, partial cds.]


[NT:rhoptry-associated protein 1; localized to rhoptry] [LE:<1] [RE:>461]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_9954012_f1_333
1347
5119
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10317307_f2_121
1348
5120
267
88
81
0.016










Description


sp:[LN:TAGB_BACSU] [AC:P27621] [GN:TAGB] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID BIOSYNTHESIS PROTEIN B PRECURSOR] [SP:P27621] [DB:swissprot]


>pir:[LN:C49757] [AC:C49757:C69720] [PN:polyglycerol phosphate techoic acid


biosynthesis protein tagB] [GN:tagB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g143725] [LN:BACTAGABCD] [AC:M57497] [GN:tagB] [OR:Bacillus


subtilis] [SR:B. subtilis (strain 168) DNA] [DB:genpept-bct1] [DE:B. subtilis


tagA, tagB, tagC and tagD genes, complete cds.] [NT:putative] [LE:1603]


[RE:2748] [DI:direct] >gp:[GI:e1184482:g2636102] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:tagB] [FN:polyglycerol phosphate assembly and


export] OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [SP:P27621]


[LE:84143] [RE:85288] [DI:direct] >gp:[GI:e1184482:g2636102] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:tagB] [FN:polyglycerol phosphate assembly and


export] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis complete


genome (section 19 of 21):from 3597091 to 3809700.] [SP:P27621] [LE:84143]


[RE:85288] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10626525_f1_58
1349
5121
1023
340
810
1.1e-80










Description


pir:[LN:E69831] [AC:EG9831] [PN:conserved hypothetical protein yhfP]


[GN:yhfP] [CL:Bacillus subtilis conserved hypothetical protein yhfP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183034:g2633368] [LN:BSUB0006]


[AC:Z99109:AL00912G] [GN:yhfP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to hypothetical proteins] [LE:106496]


[RE:107488] [DI:direct] >gp:[GI:e324995:g2226252] [LN:BSY14084] [AC:Y14084]


[PN:hypothetical protein] [GN:yhfP] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis chromosomal DNA, region 78–80 degrees:aprE to comK.]


[NT:high similarity to yhdH from E. coli (Swiss Prot] [LE:924] [RE:1916]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_10976625_c1_226
1350
5122
888
295
870
4.8e-87










Description


sp:[LN:YHXD_BACSU] [AC:P40398:007554] [GN:YHXD] [OR:BACILLUS SUBTILIS]


[EC:1.-.-.-] [DE:(EC 1.-.-.-) (ORFY)] [SP:P40398:O07554] [DB:swissprot]


>pir:[LN:E69835] [AC:E69835:S43612] [PN:ribitol dehydrogenase homolog yhxD]


[GN:yhxD] [CL:short-chain alcohol dehydrogenase homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1183045:g2633379] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhxD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to ribitol dehydrogenase] [SP:P40398]


[LE:117706] [RE:118605] [DI:complement] >gp:[GI:e324973:g2226172]


[LN:BSY14081] [AC:Y14081] [PN:hypothetical protein] [GN:yhxD] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 92


degrees:region between comK and addAB.] [NT:bp 1–501 overlaps with bp


1525–1947 (end):from EMBL] [SP:P40398] [LE:1] [RE:900] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11114677_f2_73
1351
5123
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_11740778_f2_80
1352
5124
216
71





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1207250_c3_313
1353
5125
480
159
89
0.032










Description


sp:[LN:ATP6_APIME] [AC:Q00275] [GN:ATP6] [OR:APIS MELLIFERA] [SR:,HONEYBEE]


[EC:3.6.1.34] [DE:ATP SYNTHASE A CHAIN, (PROTEIN 6)] [SP:Q00275]


[DB:swissprot] >pir:[LN:A42622] [AC:A42622:S52964] [PN:H+-transporting ATP


synthase, chain 61] [CL:H+-transporting ATP synthase protein 6]


[OR:mitochondrion Apis mellifera] [SR:, honeybee] [EC:3.6.1.34] [DB:pir2]


>gp:[GI:g552442] [LN:AMFGENOM] [AC:L06178] [PN:ATPase subunit 6]


[OR:Mitochondrion Apis mellifera ligustica] [SR:common honeybee]


[DB:genpept-inv1] [DE:Apis mellifera ligustica complete mitochondrial


genome.] [LE:4584] [RE:5264] [DI:direct] >gp:[GI:g552451] [LN:AMFMTATPAS]


[AC:M87065] [PN:adenosine triphosphatase 6] [GN:ATPase6] [OR:Mitochondrion


Apis mellifera ligustica] [SR:Mitochondrion Apis mellifera ligustica


(organelle Mitochondrio] [DB:genpept-inv1] [DE:Apis mellifera mitochondrial


adenosine triphosphatase 8 (ATPase8) gene, complete cds; adenosine


triphosphatase 6 (ATPase6) gene, complete cds.] [LE:141] [RE:821] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_1290703_c1_227
1354
5126
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14644018_f1_39
1355
5127
969
322
324
3.4e-29










Description


gp:[GI:g2196513] [LN:SEU77778] [AC:U77778:U29130] [PN:putative membrane


protein] [GN:epiH] [FN:involved in epidermin secretion] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:Staphylococcus epidermidis plasmid pTue32


putative ABC transporter subunits (epiG), (epiE), and (epiF), putative


membrane protein(epiH), EpiT′ (epiT′) and EpiT′′ (epiT′′) genes, complete


cds.] [NT:EpiH] [LE:2615] [RE:3607] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000985_14647750_c2_238
1356
5128
141
46





Description


NO-HIT



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value














AI7503000986_14656952_f2_93
1357
5129
633
210










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_15035952_f2_91
1358
5130
477
158





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_15117317_c2_243
1359
5131
2184
727
953
2.4e−102





Description







sp:[LN:TAGF_BACSU] [AC:P13485] [GN:TAGF:RODC:TAG3] [OR:BACILLUS SUBTILIS]


[DE:TEICHOIC ACID BIOSYNTHESIS PROTEIN F] [SP:P13485] [DB:swissprot]


>pir:[LN:S06049] [AC:S06049:G69720] [PN:probable CDPglycerol


glycerophosphotransferase, :CDP-glycerol:polyglycerol phosphate


glycero-phosphotransferase tagF:rodC protein:teichoic-acid synthase]


[GN:rodC:tag-3:tagF ] [OR:Bacillus subtilis] [EC:2.7.8.12] [DB:pir2] [MP:310


degrees] >gp:[GI:g40100] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodC (tag3)


polypeptide (AA 1–746)] [SP:P13485] [LE:2178] [RE:4418] [DI:direct]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [NT:alternate


gene name: rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [NT:alternate


gene name: rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_15136562_c2_253
1360
5132
1500
499
1636
3.2e−168





Description







gp:[GI:d1039113:g4514332] [LN:AB013369] [AC:AB013369] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 yesT and comEC genes, partial andcomplete


cds.] [NT:unknown] [LE:4328] [RE:5830] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_15829135_c2_237
1361
5133
204
67
105
1.0e−05





Description







pir:[LN:E69764] [AC:E69764] [PN:hypothetical protein ycnI] [GN:ycnI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182361:g2632695] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:ycnI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21):


from 402751 to611850.] [LE:43004] [RE:43618] [DI:complement]


>gp:[GI:d1009660:g1805463] [LN:D50453] [AC:D50453] [GN:ycnI] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:125407] [RE:126021] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_159377_c3_317
1362
5134
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_17047575_f3_150
1363
5135
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_174218_c1_209
1364
5136
1989
662
1225
1.1e−124





Description







sp:[LN:YHCA_BACSU] [AC:P54585] [GN:YHCA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 58.3 KD PROTEIN IN GLPD-CSPB INTERGENIC REGION] [SP:P54585]


[DB:swissprot] >pir:[LN:E69821] [AC:E69821] [PN:multidrug resistance


protein homolog yhcA] [GN:yhcA] [CL:lincomycin-resistance protein lmrB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182890:g2633224] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yhcA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to1011250.] [NT:similar to multidrug resistance protein]


[SP:P54585] [LE:174464] [RE:176062] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_179653_c3_325
1365
5137
666
221
100
0.015





Description







sp:[LN:TCR2_BACSU] [AC:P14512] [GN:TET] [OR:BACILLUS SUBTILIS]


[DE:TETRACYCLINE RESISTANCE PROTEIN] [SP:P14512] [DB:swissprot]


>pir:[LN:S42238] [AC:S42238] [PN:tetracyclin resistance protein] [GN:tet]


[CL:tetracycline resistance protein] [OR:Staphylococcus aureus] [DB:pir2]


>gp:[GI:g476735] [LN:PNS1CG] [AC:M16217] [GN:tet] [OR:Plasmid pNS1]


[SR:Plasmid pNS1 from Staphylococcus aureus, plasmid pTP5 DNA]


[DB:genpept-bct1] [DE:Plasmid pNS1 (from Staphylococcus aureus)


encodingtetracycline-resistance (tet), complete genome.] [LE:305] [RE:1684]


[DI:direct] >gp:[GI:g456770] [LN:S67449] [AC:S67449] [PN:Tet(K)] [GN:tet(K)]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus pT181]


[DB:genpept-bct1] [DE:tet(K)=tetracycline efflux protein [Staphylococcus


aureus, pT181,Plasmid, 1380 nt].] [NT:tetracycline efflux protein; This


sequence comes] [LE:1] [RE:1380] [DI:direct] >gp:[GI:g1052998] [LN:SAU38428]


[AC:U38428] [PN:tetracycline resistance protein] [GN:tet] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus plasmid pKH6] [DB:genpept-bct1]


[DE:Staphylococcus aureus tetracycline resistance plasmid pKH6,complete


sequence.] [LE:321] [RE:1700] [DI:direct] >gp:[GI:g1053140] [LN:SAU38656]


[AC:U38656] [PN:tetracycline resistance protein] [GN:tet] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus plasmid pKH1] [DB:genpept-bct1]


[DE:Staphylococcus aureus tetracycline resistance plasmid pKH1, tetgene,


complete cds.] [LE:436] [RE:1815] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_19548755_f3_132
1366
5138
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_1970178_f3_146
1367
5139
219
72





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_19742962_c1_221
1368
5140
1026
341
423
1.1e−39





Description







gp:[GI:e1486019:g4995689] [LN:LLA011653] [AC:AJ011653] [PN:aldose


1-epimerase] [GN:galM] [FN:mutarotase] [OR:Lactococcus lactis]


[DB:genpept-bct1] [EC:5.1.3.3] [DE:Lactococcus lactis (strain MG1363)


galactose operon (galAMKTEgenes).] [LE:1990] [RE:3009] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_19960885_c1_228
1369
5141
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_20579752_c3_319
1370
5142
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_20580443_c3_310
1371
5143
333
110
173
3.5e−13





Description







gp:[GI:g3582220] [LN:AE001272] [AC:AE001272] [PN:conserved hypothetical


protein] [GN:ORF00047] [OR:Lactococcus lactis] [DB:genpept-bct2]


[DE:Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmidsequence.]


[NT:similar to GB:X69895 SP:P39044 PID:40067 percent] [LE:44384] [RE:44728]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_20718790_f3_138
1372
5144
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_20789507_c2_280
1373
5145
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_20897125_c1_212
1374
5146
975
324
504
2.9e−48





Description







pir:[LN:H69806] [AC:H69806] [PN:divalent cation transport protein homolog


yfjQ] [GN:yfjQ] [CL:magnesium and cobalt transport protein] [OR:Bacillus


subtilis] [DB:pir2] >gp: [GI:e1182790:g2633124] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfjQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to1011250.] [NT:similar to divalent cation transport protein]


[LE:68033] [RE:68992] [DI:complement] >gp:[GI:d1025214:g2780401] [LN:D78509]


[AC:D78509] [PN:YfjQ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis YfjG-YfjR genes,


complete cds.] [LE:17333] [RE:18292] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_21676937_c1_190
1375
5147
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_22074200_f3_184
1376
5148
126
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_22277215_f3_142
1377
5149
1164
387
109
1.5e−05





Description







pir:[LN:C44863] [AC:C44863] [PN:R45 antigen] [OR:Plasmodium falciparum]


[DB:pir3]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_22455213_f3_169
1378
5150
687
228
411
2.1e−38





Description







gp:[GI:g4982229] [LN:AE001807] [AC:AE001807:AE000512] [PN:response regulator


DrrA] [GN:TM1655] [OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga


maritima section 119 of 136 of the complete genome.] [NT:similar to


PID:1575577 GB:AE000512 percent] [LE:12477] [RE:13220] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_22867942_c1_224
1379
5151
711
236
417
4.8e−39





Description







gp:[GI:g4262236] [LN:ATAC006200] [AC:AC006200] [PN:putative ribose


5-phosphate isomerase] [GN:F10A8.17] [OR:Arabidopsis thaliana] [SR:thale


cress] [DB:genpept-pln2] [DE:Arabidopsis thaliana chromosome II BAC F10A8


genomic sequence,complete sequence.] [LE:58788] [RE:59585] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_22869687_c1_186
1380
5152
438
145
143
5.2e−10





Description







pir:[LN:A64946] [AC:A64946] [PN:hypothetical protein b1841] [CL:copper


resistance protein pcoC] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g1788146]


[LN:AE000278] [AC:AE000278:U00096] [PN:orf, hypothetical protein] [GN:b1841]


[FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia


coli K-12 MG1655 section 168 of 400 of the completegenome.] [NT:f124; This


124 aa ORF is 39 pct identical (6 gaps)] [LE:4445] [RE:4819] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23556552_c2_240
1381
5153
405
134
123
6.9e−08





Description







sp:[LN:YCX1_PORPU] [AC:P51192] [OR:PORPHYRA PURPUREA] [DE:HYPOTHETICAL 20.1


KD PROTEIN IN YCF37-PSAF INTERGENIC REGION (ORF174)] [SP:P51192]


[DB:swissprot] >pir:[LN:S73113] [AC:S73113] [PN:hypothetical protein 174]


[OR:chloroplast Porphyra purpurea] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23601557_f1_10
1382
5154
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23601577_f3_144
1383
5155
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23611437_c1_188
1384
5156
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23839193_c1_193
1385
5157
1614
537
1324
3.7e−135





Description







pir:[LN:F69649] [AC:F69649] [PN:L-lactate permease lctP] [GN:lctP]


[CL:L-lactate permease] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182258:g2632592] [LN:BSUB0002] [AC:Z99105:AL009l26] [PN:L-lactate


permease] [GN:lctP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 2 of 21): from 194651 to415810.]


[NT:alternate gene name: ycgC] [LE:135677] [RE:137302] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23876887_f1_60
1386
5158
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23923412_f1_31
1387
5159
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_23929627_f3_160
1388
5160
177
58
46
0.046





Description







pir:[LN:I40601] [AC:I40601:S70950] [PN:mobilization protein] [GN:mobA]


[OR:Bacteroides vulgatus] [DB:pir2] >gp:[GI:g1079659] [LN:BVU38243]


[AC:U38243:M72418] [PN:mobilization protein] [GN:mobA] [FN:conjugal transfer


of Tn4555] [OR:Bacteroides vulgatus] [DB:genpept-bct1] [DE:Bacteroides


vulgatus beta-lactamase (cfxA) gene, complete cds andmobilization protein


(mobA) gene, complete cds.] [LE:1208] [RE:2611] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24250317_c1_203
1389
5161
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24267567_f3_163
1390
5162
645
214
99
0.0046





Description







pir:[LN:C70649] [AC:C70649] [PN:hypothetical protein Rv3058c] [GN:Rv3058c]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e290931:g1781155]


[LN:MTCY22D7] [AC:Z83866:AL123456] [PN:hypothetical protein Rv3058c]


[GN:Rv3058c] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 133/162.]


[NT:Rv3058c, (MTCY22D7.23), len: 216. Function:] [LE:4546] [RE:5196]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24394175_f3_151
1391
5163
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24407827_c2_266
1392
5164
561
186





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24412826_c3_323
1393
5165
963
320
286
3.7e−25





Description







sp:[LN:HUTG_KLEAE] [AC:P19452] [GN:HUTG] [OR:KLEBSIELLA AEROGENES]


[EC:3.5.3.8] [DE:(HISTIDINE UTILIZATION PROTEIN G) (FRAGMENT)] [SP:P19452]


[DB:swissprot] >gp:[GI:g149204] [LN:KPNHUTC] [AC:M34604] [OR:Klebsiella


aerogenes] [SR:Klebsiella aerogenes (strain W70) DNA] [DB:genpept-bct1]


[DE:K.aerogenes histidine utilization repressor C (hutC) gene, completecds.]


[NT:histidine utilization repressor G] [LE:<1] [RE:669] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24415925_c1_211
1394
5166
903
300
282
9.7e−25





Description







gp:[GI:g1209223] [LN:ACCEST] [AC:L38252] [PN:esterase] [GN:est]


[OR:Acinetobacter lwoffii] [DB:genpept-bct1] [DE:Acinetobacter lwoffii orf1


and esterase (est) genes, complete cds.] [LE:638] [RE:1549] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24662825_c2_279
1395
5167
618
205
538
7.3e−52





Description







pir:[LN:H70068] [AC:H70068] [PN:hypothetical protein ywrF] [GN:ywrF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184514:g2636133] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywrF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091to 3809700.] [LE:119966] [RE:120583] [DI:direct]


>gp:[GI:e311284:g1929333] [LN:BSZ93767] [AC:Z93767] [GN:ywrF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis DNA; 15.2 kb fragment, from ywqN


gene to ywrO gene.] [LE:4588] [RE:5205] [DI:complement]


>gp:[GI:e1184514:g2636133] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywrF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [LE:119966]


[RE:120583] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_2470010_c1_191
1396
5168
723
240
157
1.3e−08





Description







gp:[GI:e1407791:g4493935] [LN:PFMAL3P5] [AC:AL034556] [GN:MAL3P5.8]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P5, complete sequence.]


[NT:predicted using hexExon; MAL3P5.8 (PFC0610c),] [LE:29992] [RE:33537]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_24803386_c1_201
1397
5169
1080
359
215
1.4e−15





Description







pir:[LN:G70728] [AC:G70728] [PN:hypothetical protein Rv2563] [GN:Rv2563]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e1299946:g3261618]


[LN:MTCY9C4] [AC:Z77250:AL123456] [PN:hypothetical protein Rv2563]


[GN:Rv2563] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 113/162.]


[NT:Rv2563, (MTCY9C4.05c), len: 349. Unknown membrane] [LE:5757] [RE:6806]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_2540907_c3_304
1398
5170
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_25527188_c1_225
1399
5171
1137
378
830
8.3e−83





Description







pir:[LN:E69640] [AC:E69640] [PN:hippurate hydrolase hipO] [GN:hipO]


[CL:hippurate hydrolase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184178:g2635394] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:hippurate


hydrolase] [GN:hipO] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.5.1.32]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131to


3013540.] [LE:203660] [RE:204910] [DI:complement] >gp:[GI:e1185802:g2635413]


[LN:BSUB0016] [AC:Z99119:AL009126] [PN:hippurate hydrolase] [GN:hipO]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.5.1.32] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771to 3213410.] [LE:1020]


[RE:2270] [DI:complement] >gp:[GI:g2293256] [LN:AF008220] [AC:AF008220]


[PN:putative hippurate hydrolase] [GN:hipO] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:178157] [RE:179407] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_25551640_c1_214
1400
5172
861
286
112
0.0023





Description







gp:[GI:e1331922:g3758855] [LN:PFMAL3P6] [AC:Z98551] [GN:MAL3P6.11]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P6, complete sequence.]


[NT:predicted using hexExon; MAL3P6.11 (PFC0760c),] [LE:53772] [RE:63956]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_25579390_f1_50
1401
5173
1194
397
402
8.5e−37





Description







gp:[GI:e1294490:g3169038] [LN:SC1C3] [AC:AL023702] [PN:putative transferase]


[GN:SC1C3.12] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 1C3.] [NT:SC1C3.12, possible transferase,


len: 697 aa; weakly] [LE:13186] [RE:15279] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_25910952_c3_309
1402
5174
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_26753588_f1_44
1403
5175
1383
460
344
2.6e−31





Description







pir:[LN:H69762] [AC:H69762] [PN:two-component sensor histidine kinase


homolog yclK] [GN:yclK] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182343:g2632677] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:yclK]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to611850.] [NT:similar to


two-component sensor histidine kinase] [LE:24077] [RE:25498] [DI:direct]


>gp:[GI:d1009643:g1805446] [LN:D50453] [AC:D50453] [PN:homologue of alkaline


phosphatase synthesis] [GN:yclK] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA


for 25–36 degree region containing theamyE-srfA region, complete cds.]


[LE:106480] [RE:107901] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_272550_c2_268
1404
5176
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_292883_c2_229
1405
5177
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_29565627_c3_286
1406
5178
879
292





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_30476575_c1_216
1407
5179
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_30703458_c2_230
1408
5180
906
301
1241
2.3e−126





Description







sp:[LN:PTSB_STAXY] [AC:P51184] [GN:SCRA] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:2.7.1.69] [DE:(EC 2.7.1.69) (EII-SCR)] [SP:P51184] [DB:swissprot]


>pir:[LN:S39978] [AC:S39978] [PN:scrA protein] [CL:phosphotransferase


system sucrose-specific enzyme II, factor II] [OR:Staphylococcus xylosus]


[DB:pir2] >gp:[GI:g407908] [LN:SXSCRA] [AC:X69800] [PN:EIIscr] [GN:scrA]


[OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:S.xylosus scrA gene and


unidentified open reading frames.] [NT:ORF2] [SP:P51184] [LE:1053] [RE:2495]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_34032561_c3_316
1409
5181
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_34199202_c1_189
1410
5182
540
179
343
3.3e−31





Description







gp:[GI:e1184294:g2635712] [LN:BSUB0017] [AC:Z99120:AL009126]


[PN:transcriptional regulator] [GN:paiA] [FN:negative regulation of


sporulation, septation] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 17 of 21): from 3197001to


3414420.] [LE:106800] [RE:107318] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_34610667_c3_297
1411
5183
690
229
465
3.9e−44





Description







pir:[LN:B69377] [AC:B69377] [PN:ABC transporter, ATP-binding protein


homolog] [CL:unassigned ATP-binding cassette proteins: ATP-binding cassette


homology] [OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649576]


[LN:AE001033] [AC:AE001033:AE000782] [PN:ABC transporter, ATP-binding


protein] [GN:AF1018] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2]


[DE:Archaeoglobus fulgidus section 74 of 172 of the complete genome.]


[NT:similar to GB:L77117 SP:Q58206 PID:1591493 percent] [LE:2126] [RE:2812]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_35955213_c3_302
1412
5184
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_36140963_f2_120
1413
5185
1431
476
226
1.9e−15





Description







sp:[LN:TAGF_BACSU] [AC:P13485] [GN:TAGF:RODC:TAG3] [OR:BACILLUS SUBTILIS]


[DE:TEICHOIC ACID BIOSYNTHESIS PROTEIN F] [SP:P13485] [DB:swissprot]


>pir:[LN:S06049] [AC:S06049:G69720] [PN:probable CDPglycerol


glycerophosphotransferase, :CDP-glycerol:polyglycerol phosphate


glycero-phosphotransferase tagF:rodC protein:teichoic-acid synthase]


[GN:rodC:tag-3:tagF] [OR:Bacillus subtilis] [EC:2.7.8.12] [DB:pir2] [MP:310


degrees] >gp:[GI:g40100] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodC (tag3)


polypeptide (AA 1–746)] [SP:P13485] [LE:2178] [RE:4418] [DI:direct]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [NT:alternate


gene name: rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]


>gp:[GI:e1184478:g2636098] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:CDP-glycerol:polyglycerol phosphate] [GN:tagF] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [NT:alternate


gene name: rodC] [SP:P13485] [LE:78129] [RE:80369] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_3906385_f3_183
1414
5186
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_3957511_c2_248
1415
5187
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4062562_c2_269
1416
5188
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4178140_c2_270
1417
5189
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4297627_f2_119
1418
5190
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4382062_f1_19
1419
5191
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4496062_c3_287
1420
5192
345
114
168
1.2e−12





Description







pir:[LN:E69764] [AC:E69764] [PN:hypothetical protein ycnI] [GN:ycnI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182361:g2632695] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:ycnI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21):


from 402751 to611850.] [LE:43004] [RE:43618] [DI:complement]


>gp:[GI:d1009660:g1805463] [LN:D50453] [AC:D50453] [GN:ycnI] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:125407] [RE:126021] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4687893_c1_213
1421
5193
1059
352
523
2.8e−50





Description







gp:[GI:g2822338] [LN:AF016485] [AC:AF016485] [OR:Halobacterium sp. NRC-1]


[DB:genpept-bct2] [DE:Halobacterium sp. NRC-1 plasmid pNRC100, complete


plasmid sequence.] [NT:ORF H0660; similar to ORF in Sulfolobus] [LE:60258]


[RE:61397] [DI:complement] >gp:[GI:g2822427] [LN:AF016485] [AC:AF016485]


[OR:Halobacterium sp. NRC-1] [DB:genpept-bct2] [DE:Halobacterium sp. NRC-1


plasmid pNRC100, complete plasmid sequence.] [NT:ORF H1696; similar to


Sulolobus solfataricus] [LE:161992] [RE:163131] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4689007_f1_49
1422
5194
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4727217_f1_25
1423
5195
402
133





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4797125_f3_148
1424
5196
1647
548
970
1.2e−97





Description







sp:[LN:ARAB_BACSU] [AC:P94524] [GN:ARAB] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.16] [DE:L-RIBULOKINASE,] [SP:P94524] [DB:swissprot]


>pir:[LN:D69587] [AC:D69587] [PN:L-ribulokinase araB] [GN:araB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184128:g2635344] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:L-ribulokinase] [GN:araB] [FN:L-arabinose


utilization] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.1.16]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131to


3013540.] [SP:P94524] [LE:149661] [RE:151343] [DI:complement]


>gp:[GI:e1165307:g1770015] [LN:BSZ75208] [AC:Z75208] [PN:L-ribulokinase]


[GN:araB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis genomic


sequence 89009bp.] [NT:homology to araB of Escherichia coli;identified on]


[SP:P94524] [LE:18564] [RE:20246] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_4881588_c2_258
1425
5197
465
154
134
4.7e−09





Description







pir:[LN:A69783] [AC:A69783] [PN:transcription regulator MarR family homolog


ydgG] [GN:ydgG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020150:g1881370]


[LN:AB001488] [AC:AB001488] [GN:ydgG] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the regionbetween 35 and 47 degree.]


[NT:FUNCTION UNKNOWN.] [LE:142152] [RE:142610] [DI:direct]


>gp:[GI:e1182530:g2632864] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydgG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to611850.] [NT:similar to


transcriptional regulator (MarR family)] [LE:205898] [RE:206356] [DI:direct]


>gp:[GI:e1182543:g26328771] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydgG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to813890.] [NT:similar to


transcriptional regulator (MarR family)] [LE:7948] [RE:8406] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_5111253_f1_6
1426
5198
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_5128587_f1_12
1427
5199
696
231
336
1.8e−30





Description







pir:[LN:A69811] [AC:A69811] [PN:conserved hypothetical protein yf1K]


[GN:yf1K] [CL:hypothetical protein HI0278] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182755:g2633089] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yf1K]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to1011250.] [NT:similar to


hypothetical proteins] [LE:34765] [RE:35430] [DI:direct]


>gp:[GI:d1023167:g2443233] [LN:D86417] [AC:D86417] [PN:Yf1K] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis 35.7 kb genomic DNA, 70–73 degree region,complete


cds.] [LE:13092] [RE:13757] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_5283390_c2_259
1428
5200
1416
471
465
3.9e−44





Description







gp:[GI:g3676414] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf423] [LE:755] [RE:2026]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_6307_f3_182
1429
5201
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_6930462_c2_260
1430
5202
1227
408
634
4.9e−62





Description







pir:[LN:E69783] [AC:E69783] [PN:bicyclomycin resistance protein homolog


ydgK] [GN:ydgK] [CL:bicyclomycin resistance protein] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1020154:g1881374] [LN:AB001488] [AC:AB001488] [GN:ydgK]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the regionbetween 35 and 47 degree.] [NT:SIMILAR TO BICYCLOMYCIN RESISTANCE


PROTEIN.] [LE:146860] [RE:148068] [DI:direct] >gp:[GI:e1182547:g2632881]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydgK] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to813890.] [NT:similar to bicyclomycin resistance


protein] [LE:12656] [RE:13864] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_7242812_f3_152
1431
5203
627
208
373
2.2e−34





Description







sp:[LN:3MGH_BACSU] [AC:P94378] [GN:YXLJ] [OR:BACILLUS SUBTILIS] [EC:3.2.2.-]


[DE:PUTATIVE 3-METHYLADENINE DNA GLYCOSYLASE,] [SP:P94378] [DB:swissprot]


>pir:[LN:D70082] [AC:D70082] [PN:DNA-3-methyladenine glycosidase homolog


yxlJ] [GN:yxlJ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186361:g2636397]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:yxlJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401to 4010550.] [NT:similar to DNA-3-methyladenine


glycosidase] [SP:P94378] [LE:164671] [RE:165261] [DI:complement]


>gp:[GI:d1012408:g1783264] [LN:D83026] [AC:D83026:D45911] [GN:yxlJ]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence covering lic-cel


region.] [NT:homologous to DNA glycosylases; hypothetical] [LE:59204]


[RE:59794] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_803137_f1_5
1432
5204
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_804837_f1_59
1433
5205
963
320
342
4.3e−31





Description







gp:[GI:e327689:g2407930] [LN:LLPFLDB13] [AC:AJ000326] [GN:orfA] [FN:putative


membrane protein] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus


lactis pfl gene (strain DB1341).] [LE:464] [RE:1381] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_814838_c1_208
1434
5206
660
219
472
7.1e−45





Description







pir:[LN:D69821] [AC:D69821] [PN:hypothetical protein yhbJ] [GN:yhbJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182889:g2633223] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yhbJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to1011250.] [LE:173758] [RE:174423] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_837578_c3_326
1435
5207
1233
410
708
7.0e−70





Description







pir:[LN:D70179] [AC:D70179] [PN:Na+/H+ antiporter (nhaC-1) homolog]


[OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2]


>gp:[GI:g2688567] [LN:AE001165] [AC:AE001165:AE000783] [PN:Na+/H+ antiporter


(nhaC-1)] [GN:BB0637] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi (section 51 of 70) of the


complete genome.] [NT:similar to GB:M73530 SP:P27611 PID:143245] [LE:6377]


[RE:7726] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_8568_c3_289
1436
5208
429
142
73
0.017





Description







gp:[GI:g4151243] [LN:AF063590] [AC:AF063590] [PN:microcin E492 immunity


protein] [GN:mceB] [OR:Klebsiella pneumoniae] [DB:genpept-bct2]


[DE:Klebsiella pneumoniae microcin E492 precursor (mceA) and microcinE492


immunity protein (mceB) genes, complete cds.] [NT:overlapping with mceA]


[LE:541] [RE:828] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_901515_c3_318
1437
5209
285
94
81
0.0019





Description







gp:[GI:g4731215] [LN:BMMITOCH03] [AC:AF110612] [PN:cytochrome b apoenzyme]


[GN:Cytb] [OR:Mitochondrion Boophilus microplus] [SR:southern cattle tick]


[DB:genpept-inv2] [DE:Boophilus microplus cytochrome b apoenzyme (Cytb)


gene, partialcds; tRNA-Ser, tRNA-Leu, tRNA-Cys, and tRNA-Met genes,


completesequence; and NADH dehydrogenase subunit 2 (ND2) gene, partial


cds,mitochondrial genes for mitochondrial products.] [LE:<1] [RE:285]


[DI:direct] >gp:[GI:g4731215] [LN:BMMITOCH03] [AC:AF110612] [PN:cytochrome b


apoenzyme] [GN:Cytb] [OR:Mitochondrion Boophilus microplus] [SR:southern


cattle tick] [DB:genpept] [DE:Boophilus microplus cytochrome b apoenzyme


(Cytb) gene, partialcds; tRNA-Ser, tRNA-Leu, tRNA-Cys, and tRNA-Met genes,


completesequence; and NADH dehydrogenase subunit 2 (ND2) gene, partial


cds,mitochondrial genes for mitochondrial products.] [LE:<1] [RE:285]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_968751_f2_63
1438
5210
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_975261_f3_149
1439
5211
168
55
60
0.022





Description







sp:[LN:YC36_GUITH] [AC:O78501] [GN:YCF36] [OR:GUILLARDIA THETA]


[SR:,CRYPTOMONAS PHI] [DE:HYPOTHETICAL 18.4 KD PROTEIN YCF36] [SP:O78501]


[DB:swissprot] >gp:[GI:g3603031] [LN:AF041468]


[AC:AF041468:X14171:X62349:X51511:X14504:X52158:X52912:X56806:M7654 7]


[PN:hypothetical chloroplast RF36] [GN:ycf36] [OR:Chloroplast Guillardia


theta] [SR:Guillardia theta] [DB:genpept-pln2] [DE:Guillardia theta complete


plastid genome.] [LE:88514] [RE:88981] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_9797911_f3_139
1440
5212
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_984628_f2_65
1441
5213
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_990952_f3_155
1442
5214
1209
402
744
1.1e−73





Description







gp:[GI:d1042605:g5103194] [LN:AP000342] [AC:AP000342] [GN:ydhA] [OR:Plasmid


R100] [SR:Plasmid R100 (lab_host:Escherichia coli strain K-12) DNA]


[DB:genpept] [DE:Plasmid R100 genomic DNA.] [NT:58% identical (1 gap) to 376


residues of 404 aa] [LE:37813] [RE:39018] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000986_9944132_f1_20
1443
5215
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10188258_f1_158
1444
5216
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10547152_f1_153
1445
5217
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10662763_c2_764
1446
5218
1089
362
688
9.2e−68





Description







sp:[LN:YACL_BACSU] [AC:Q06754] [GN:YACL] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 40.9 KD PROTEIN IN MECB-GLTX INTERGENIC REGION] [SP:Q06754]


[DB:swissprot] >pir:[LN:S66118] [AC:S66118:D69741] [PN:conserved


hypothetical protein yacL] [GN:yacL] [CL:conserved hypothetical protein


yacL] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005865:g467477]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:172273]


[RE:173373] [DI:direct] >gp:[GI:e1182022:g2632356] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:yacL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [NT:similar to hypothetical proteins] [SP:Q06754]


[LE:108671] [RE:109771] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10667002_c1_690
1447
5219
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10734838_c2_819
1448
5220
996
331
397
6.3e−37





Description







sp:[LN:ER19_YEAST] [AC:P32377] [GN:ERG19:MVD1:MPD:YNR043W:N3427]


[OR:SACCHAROMYCES CEREVISIAE] [SR:,BAKER'S YEAST] [EC:4.1.1.33]


[DE:PYROPHOSPHATE DECARBOXYLASE)] [SP:P32377] [DB:swissprot]


>pir:[LN:S63374] [AC:S63374:S20057] [PN:diphosphomevalonate


decarboxylase,:protein N3427:protein YNR043w] [GN:MVD1:ERG19:MPD]


[OR:Saccharomyces cerevisiae] [EC:4.1.1.33] [DB:pir2] [MP:14R]


>gp:[GI:e238625:g1292890] [LN:SCERG19] [AC:X97557] [PN:diphosphomevalonate


decarboxylase] [GN:ERG19] [OR:Saccharomyces cerevisiae] [SR:baker's yeast]


[DB:genpept-pln1] [EC:4.1.1.33] [DE:S.cerevisiae ERG19 gene.] [SP:P32377]


[LE:544] [RE:1734] [DI:direct] >gp:[GI:e239591:g1302550] [LN:SCYNR043W]


[AC:Z71658:Y13139] [GN:MVD1] [OR:Saccharomyces cerevisiae] [SR:baker's


yeast] [DB:genpept-pln1] [DE:S.cerevisiae chromosome XIV reading frame ORF


YNR043w.] [NT:ORF YNR043w] [SP:P32377] [LE:229] [RE:1419] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10735832_c1_722
1449
5221
273
90
67
0.0041





Description







pir:[LN:E71854] [AC:E71854] [PN:hypothetical protein jhp1053] [GN:jhp1053]


[OR:Helicobacter pylori] [SR:strain J99, , strain J99] [SR:strain J99,]


[DB:pir2] >gp:[GI:g4155644] [LN:AE001533] [AC:AE001533:AE001439]


[PN:putative] [GN:jhp1053] [OR:Helicobacter pylori J99] [DB:genpept-bct2]


[DE:Helicobacter pylori, strain J99 section 94 of 132 of the


completegenome.] [NT:similar to H. pylori 26695 gene HP1124] [LE:5370]


[RE:6365] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_10928_c2_757
1450
5222
1242
413
230
1.2e−16





Description







pir:[LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp:[GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN:hypothetical protein] [OR:Rhodobacter capsulatus] [DB:genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_110766_f1_13
1451
5223
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_117893_c3_957
1452
5224
426
141





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_11894032_c3_930
1453
5225
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12267167_c2_786
1454
5226
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_1227250_f3_539
1455
5227
996
331
562
2.1e−54





Description







sp:[LN:YXEI_BACSU] [AC:P54948] [GN:YXEI:LP9A] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 37.2 KD PROTEIN IN IDH-DEOR INTERGENIC REGION] [SP:P54948]


[DB:swissprot] >pir:[LN:C70075] [AC:C70075] [PN:penicillin amidase homolog


yxeI] [GN:yxeI] [CL:choloylglycine hydrolase] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1184679:g2636500] [LN:BSUB0021] [AC:Z99124:AL009126]


[GN:yxeI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 21 of 21): from 3999281to 4214814.]


[NT:similar to penicillin amidase] [SP:P54948] [LE:62053] [RE:63039]


[DI:complement] >gp:[GI:d1008921:g1408494] [LN:D45912] [AC:D45912] [GN:yxeI]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (Marburg 168;


trpC2)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence between


the iol and hut operon,partial and complete cds.] [NT:homologous to


penicillin acylase] [LE:8437] [RE:9423] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12516511_c2_813
1456
5228
129
42
164
4.7e−12





Description







gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, completecds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12601637_c3_898
1457
5229
144
47
76
0.0065





Description







pir:[LN:B70148] [AC:B70148] [PN:ribosomal protein S12] [GN:BB0387:rpsL]


[CL:Escherichia coli ribosomal protein S12] [OR:Borrelia burgdorferi] [SR:,


Lyme disease spirochete] [DB:pir2] >gp:[GI:g2688295] [LN:AE001144]


[AC:AE001144:AE000783] [PN:ribosomal protein S12 (rpsL)] [GN:BB0387]


[OR:Borrelia burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2]


[DE:Borrelia burgdorferi (section 30 of 70) of the complete genome.]


[NT:similar to SP:P18662 percent identity: 79.03;] [LE:1809] [RE:2183]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12714833_c2_863
1458
5230
1218
405
95
0.021





Description







pir:[LN:S72278] [AC:S72278:S78483] [PN:ATP-dependent Clp proteinase,


homolog] [GN:clpC] [OR:plastid Plasmodium falciparum] [EC:3.4.21.-]


[DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12902217_f2_349
1459
5231
681
226
292
8.5e−26





Description







pir:[LN:D69906] [AC:D69906] [PN:hypothetical protein yojG] [GN:yojG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185418:g2634339] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yojG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171to 2207900.] [LE:120715] [RE:121143] [DI:complement]


>gp:[GI:g3169323] [LN:AF026147] [AC:AF026147] [PN:YojG] [GN:yojG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


YojA (yojA), YojB (yojB), YojC (yojC), YojD(yojD), YojE (yojE), YojF (yojF),


YojG (yojG), YojH (yojH), YojI(yojI), YojJ (yojJ), YojK (yojK), YojL (yojL),


YojM (yojM), YojN(yojN), and YojO (yojO) genes, complete cds; and OdhA


(odhA) gene,partial cds.] [LE:4122] [RE:4550] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_12932802_f1_115
1460
5232
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_134702_f1_113
1461
5233
834
277
673
3.6e−66





Description







sp:[LN:THID_BACSU] [AC:P39610] [GN:THID:IPA-52R] [OR:BACILLUS SUBTILIS]


[EC:2.7.4.7] [DE:(HMP-P KINASE)] [SP:P39610] [DB:swissprot] >pir:[LN:S39707]


[AC:S39707:F69722] [PN:phosphomethylpyrimidine kinase thiD:protein ipa-52r]


[GN:thiD] [CL:phosphomethylpyrimidine phosphate kinase] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g413976] [LN:BSGENR] [AC:X73124] [GN:ipa-52r]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis genomic region (325


to 333).] [SP:P39610] [LE:55788] [RE:56603] [DI:complement]


>gp:[GI:e1186301:g2636337] [LN:BSUB0020] [AC:Z99123:AL009126]


[PN:phosphomethylpyrimidine kinase] [GN:thiD] [FN:thiamin biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.4.7] [DE:Bacillus subtilis


complete genome (section 20 of 21): from 3798401to 4010550.] [NT:alternate


gene name: ywdB, ipa-52r] [SP:P39610] [LE:101359] [RE:102174] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_13695125_c2_771
1462
5234
603
200
117
9.1e−06





Description







gp:[GI:g3025463] [LN:CAU58131] [AC:U58131] [PN:SigX] [GN:sigX]


[OR:Clostridium acetobutylicum] [DB:genpept-bct2] [DE:Clostridium


acetobutylicum pho-sigX gene region, phoP, phoR, sigX,orf36, and orf18


genes, complete cds.] [NT:proposed ECF subfamily RNA polymerase sigmafactor]


[LE:3293] [RE:3847] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_1379061_c3_991
1463
5235
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_13835930_c3_950
1464
5236
276
91





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_13876005_c1_677
1465
5237
339
112





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14254437_c3_903
1466
5238
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14460882_f1_107
1467
5239
177
58
236
7.3e−20





Description







gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, completecds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14501556_f2_325
1468
5240
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14537578_c2_763
1469
5241
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14547143_c3_912
1470
5242
522
173
501
6.0e−48





Description







sp:[LN:YAAJ_BACSU] [AC:P21335] [GN:YAAJ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 17.8 KD PROTEIN IN SERS-DNAH INTERGENIC REGION] [SP:P21335]


[DB:swissprot] >pir:[LN:S11690] [AC:S11690:S66048:B69737] [PN:conserved


hypothetical protein yaaJ] [GN:yaaJ] [CL:hypothetical protein Yaaj]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005796:g467408] [LN:BAC180K]


[AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:89452] [RE:89937]


[DI:direct] >gp:[GI:g40011] [LN:BSORF17] [AC:X52144] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis DNA for ORF17, small cytoplasmic RNA


and partialdnaX gene.] [NT:ORF17 (AA 1–161)] [SP:P21335] [LE:129] [RE:614]


[DI:direct] >gp:[GI:e1181951:g2632285] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:yaaJ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to213080.] [NT:similar to


hypothetical proteins] [SP:P21335] [LE:25850] [RE:26335] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14587817_f3_520
1471
5243
528
175





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14647510_f1_27
1472
5244
255
84





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14879688_c1_704
1473
5245
927
308
234
5.1e−26





Description







pir:[LN:A71042] [AC:A71042] [PN:probable mevalonate kinase] [GN:PH1625]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031680:g3258054]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:335aa long hypothetical mevalonate kinase] [GN:PH1625] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus


horikoshi] [DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA,


1166001–1485000 nt. position(6/7).] [NT:similar to owl:MTU47134 percent


identity: 41.993 in] [LE:275590] [RE:276597] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14882681_c1_717
1474
5246
210
69
99
2.4e−05





Description







gp:[GI:g2897106] [LN:AF020798] [AC:AF020798] [PN:repressor]


[OR:Streptococcus thermophilus bacteriophage TP-J34] [DB:genpept-phg]


[DE:Streptococcus thermophilus bacteriophage lysogeny module,


integrasehomolog (int), putative host cell surface-exposed


lipoprotein,putative metallo-proteinase, repressor, Cro-like


regulatoryprotein, and P1-antirepressor homolog genes, complete cds.]


[NT:CI-like regulatory protein; orf121] [LE:4825] [RE:5190] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_14885260_c2_839
1475
5247
441
146
209
5.3e−17





Description







gp:[GI:g2444132] [LN:U88974] [AC:U88974] [PN:ORF25] [OR:Streptococcus


thermophilus temperate bacteriophage O1205] [DB:genpept-phg]


[DE:Streptococcus thermophilus temperate bacteriophage O1205,


completegenome.] [NT:putative small subunit of the terminase] [LE:13835]


[RE:14329] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_15735181_f3_451
1476
5248
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_15782160_c3_905
1477
5249
747
248
469
1.5e−44





Description







gp:[GI:g1458327] [LN:CELF08F3] [AC:U64847] [GN:F08F3.4] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid F08F3.] [LE:1515:1817:2044:2841]


[RE:1758:1994:2276:3110] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_15892932_c3_902
1478
5250
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16054827_c3_959
1479
5251
357
118
184
2.4e−14





Description







pir:[LN:T00183] [AC:T00183] [PN:hypothetical protein 50] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032884:g3341957] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 50] [LE:36701] [RE:37069]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16212803_c2_844
1480
5252
318
105
124
5.4e−08





Description







pir:[LN:S58144] [AC:S58144] [PN:gene 15 protein] [OR:phage SPP1] [DB:pir2]


>gp:[GI:e244843:g2764862] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 15] [LE:9012] [RE:9320] [DI:direct] >gp:[GI:g1052813]


[LN:SPP1HEADG] [AC:X89721] [GN:15] [OR:Bacteriophage SPP1] [DB:genpept-phg]


[DE:Bacteriophage SPP1 head morphogenesis genes 7 to 15.] [NT:product


required for head morphogenesis] [LE:5788] [RE:6096] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16413130_f1_128
1481
5253
246
81
146
1.8e−08





Description







gp:[GI:g3929312] [LN:AF100426] [AC:AF100426] [PN:fimbriae-associated protein


Fap1] [GN:fap1] [OR:Streptococcus parasanguinis] [DB:genpept-bct2]


[DE:Streptococcus parasanguis fimbriae-associated protein Fap1 (fap1)gene,


complete cds.] [NT:invovled in fimbriae assembly and fimbriae-mediated]


[LE:284] [RE:7996] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16603427_c2_861
1482
5254
531
176





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16681687_c1_635
1483
5255
1029
342
694
2.1e−68





Description







sp:[LN:YACI_BACSU] [AC:P37570] [GN:YACI] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 41.1 KD PROTEIN IN LYSS-MECB INTERGENIC REGION (ORFX)]


[SP:P37570] [DB:swissprot] >pir:[LN:S66114] [AC:S66114:I40507:B69741]


[PN:creatine kinase homolog yacI] [GN:yacI] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1005861:g467473] [LN:BAC180K] [AC:D26185] [PN:unknown]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:166083] [RE:167174] [DI:direct]


>gp:[GI:e1182018:g2632352] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:yacI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to213080.] [NT:similar to creatine


kinase] [SP:P37570] [LE:102481] [RE:103572] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16798777_c1_646
1484
5256
3558
1185
5906
0.0





Description







sp:[LN:RPOB_STAAU] [AC:P47768] [GN:RPOB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.7.6] [DE:BETA CHAIN] (RNA POLYMERASE BETA SUBUNIT)] [SP:P47768]


[DB:swissprot] >pir:[LN:S59951] [AC:S59951] [PN:DNA-directed RNA


polymerase, beta chain] [GN:rpoB] [CL:DNA-directed RNA polymerase beta


chain] [OR:Staphylococcus aureus] [EC:2.7.7.6] [DB:pir2] >gp:[GI:g677851]


[LN:SARPLRPO] [AC:X64172] [PN:DNA-directed RNA polymerase beta chain]


[GN:rpoB] [OR:Staphylococcus aureus] [DB:genpept-bct1] [EC:2.7.7.6]


[DE:S.aureus rplL, orf202, rpoB(rif) and rpoC genes for ribosomalprotein


L7/L12, hypothetical protein ORF202, DNA-directed RNApolymerase beta & beta′


chains.] [SP:P47768] [LE:1222] [RE:4770] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_16972575_f1_196
1485
5257
186
61
76
0.036





Description







gp:[GI:g4580755] [LN:AF061085] [AC:AF061085] [PN:P-glycoprotein]


[OR:Gossypium herbaceum] [DB:genpept-pln2] [DE:Gossypium herbaceum


P-glycoprotein gene, partial cds.] [NT:similar to P-glycoprotein in Hordeum


vulgare and] [LE:<22] [RE:>894] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_1702_f2_209
1486
5258
522
173
88
0.0089





Description







pir:[LN:T00168] [AC:T00168] [PN:hypothetical protein 33] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032869:g3341942] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 33] [LE:28172] [RE:28582]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_19690876_c3_935
1487
5259
876
291
662
5.3e−65





Description







sp:[LN:YWFL_BACSU] [AC:P39648] [GN:YWFL:IPA-90D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.4 KD PROTEIN IN PTA 3′REGION] [SP:P39648] [DB:swissprot]


>pir:[LN:S39745] [AC:S39745:D70056] [PN:ywfL protein:hypothetical protein


ipa-90d] [GN:ywfL] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g414014]


[LN:BSGENR] [AC:X73124] [GN:ipa-90d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis genomic region (325 to 333).] [SP:P39648]


[LE:93300] [RE:94145] [DI:direct] >gp:[GI:e1186264:g2636300] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywfL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401to 4010550.] [NT:alternate gene name: ipa-90d] [SP:P39648]


[LE:63814] [RE:64659] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_19695386_c3_953
1488
5260
771
256
111
0.00059





Description







pir:[LN:T00180] [AC:T00180] [PN:hypothetical protein 46] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032881:g3341954] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 46] [LE:35157] [RE:36050]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20078287_f3_533
1489
5261
825
274
145
2.5e−07





Description







pir:[LN:B70798] [AC:B70798] [PN:probable membrane protein] [GN:Rv3737]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e1264597:g2960161]


[LN:MTV025] [AC:AL022121:AL123456] [PN:hypothetical protein Rv3737]


[GN:Rv3737] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 155/162.]


[NT:Rv3737, (MTV025.085), len: 529. Probable membrane] [LE:94796] [RE:96385]


[DI:direct] >gp:[GI:e1264597:g2960161] [LN:MTV025] [AC:AL022121:AL123456]


[PN:hypothetical protein Rv3737] [GN:Rv3737] [OR:Mycobacterium tuberculosis]


[DB:genpept] [DE:Mycobacterium tuberculosis H37Rv complete genome; segment


155/162.] [NT:Rv3737, (MTV025.085), len: 529. Probable membrane] [LE:94796]


[RE:96385] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20087752_f2_352
1490
5262
1506
501
397
2.5e−36





Description







sp:[LN:TAGE_BACSU] [AC:P13484] [GN:TAGE:RODD:GTAA] [OR:BACILLUS SUBTILIS]


[EC:2.4.1.52] [DE:(EC 2.4.1.52) (TEICHOIC ACID BIOSYNTHESIS PROTEIN E)]


[SP:P13484] [DB:swissprot] >pir:[LN:S06048] [AC:S06048:F69720]


[PN:poly(glycerol-phosphate) alpha-glucosyltransferase, tagE:probable rodD


protein:UDP-glucose--polyglycerol phosphate glucosyltransferase tagE]


[GN:tagE:rodD] [OR:Bacillus subtilis] [EC: 2.4.1.52] [DB:pir2] [MP:310


degrees] >gp:[GI:g580920] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodD (gtaA)


polypeptide (AA 1–673)] [SP:P13484] [LE:157] [RE:2178] [DI:direct]


>gp:[GI:e1184479:g2636099] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:UDP-glucose:polyglycerol phosphate] [GN:tagE] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.4.1.52]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091to


3809700.] [NT:alternate gene name: rodD, gtaA, gtaD] [SP:P13484] [LE:80369]


[RE:82390] [DI:complement] >gp:[GI:e1184479:g2636099] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-glucose:polyglycerol phosphate] [GN:tagE]


[FN:teichoic acid biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


[EC:2.4.1.52] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:alternate gene name: rodD, gtaA, gtaD] [SP:P13484]


[LE:80369] [RE:82390] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20322153_c2_818
1491
5263
219
72





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20331552_c1_659
1492
5264
996
331
447
3.2e−42





Description







pir:[LN:C69066] [AC:C69066] [PN:ornithine cyclodeaminase] [GN:MTH1495]


[OR:Methanobacterium thermoautotrophicum] [DB:pir2] >gp:[GI:g2622612]


[LN:AE000910] [AC:AE000910:AE000666] [PN:ornithine cyclodeaminase]


[GN:MTH1495] [OR:Methanobacterium thermoautotrophicum] [DB:genpept-bct2]


[DE:Methanobacterium thermoautotrophicum from bases 1349621 to


1362200 (section 116 of 148) of the complete genome.] [NT:Function Code:5.09-


L-Amino Acid Metabolism,] [LE:963] [RE:1982] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20511590_c3_893
1493
5265
384
127
414
1.0e−38





Description







sp:[LN:RL7_MICLU] [AC:P02395] [GN:RPLL] [OR:MICROCOCCUS LUTEUS]


[SR:,MICROCOCCUS LYSODEIKTICUS] [DE:50S RIBOSOMAL PROTEIN L7/L12 (MA1/MA2)]


[SP:P02395] [DB:swissprot] >pir:[LN:R7MCML] [AC:A02771] [PN:ribosomal


protein L7/L12:ribosomal protein MA] [CL:Escherichia coli ribosomal protein


L12] [OR:Micrococcus luteus:Micrococcus lysodeikticus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20756260_c1_729
1494
5266
408
135
184
2.4e−14





Description







pir:[LN:T00194] [AC:T00194] [PN:hypothetical protein 61] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032895:g3341968] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 61] [LE:39932] [RE:40402]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_20980262_c2_762
1495
5267
2472
823
2959
0.0





Description







sp:[LN:MECB_BACSU] [AC:P37571] [GN:MECB:CLPC] [OR:BACILLUS SUBTILIS]


[DE:NEGATIVE REGULATOR OF GENETIC COMPETENCE MECB] [SP:P37571]


[DB:swissprot] >pir:[LN:I40508] [AC:I40508:S66115:I40385:H69600] [PN:class


III stress response-related ATPase clpC:adenosine triphosphatase


clpC:clpA/clpB protein homolog] [GN:clpC:mecB] [CL:ATP-dependent Clp


proteinase chain A] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005862:g467474] [LN:BAC180K] [AC:D26185] [PN:clpA/clpB family]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:167171] [RE:169603] [DI:direct] >gp:[GI:g442360]


[LN:BSU02604] [AC:U02604] [PN:ClpC adenosine triphosphatase] [GN:mecB]


[FN:competence gene repressor; required for cell] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis Marburg 168 ClpC adenosine


triphosphatase (mecB)gene, complete cds, orfX and orfY, partial cds.]


[LE:335] [RE:2767] [DI:direct] >gp:[GI:e1182019:g2632353] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:class III stress response-related ATPase] [GN:clpC]


[FN:negative regulator of late competence genes;] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [NT:alternate gene name: mecB] [SP:P37571] [LE:103569]


[RE:106001] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_2117202_c2_831
1496
5268
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_21484465_c2_848
1497
5269
516
171
98
0.019





Description







gp:[GI:g3702331] [LN:ATAC005397] [AC:AC005397] [GN:T3F17.17] [OR:Arabidopsis


thaliana] [SR:thale cress] [DB:genpept-pln2] [DE:Arabidopsis thaliana


chromosome II BAC T3F17 genomic sequence,complete sequence.]


[NT:hypothetical protein] [LE:52308:52593:52780:53023]


[RE:52505:52691:52902:53157] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_21598838_f3_534
1498
5270
465
154
155
7.2e−11





Description







sp:[LN:YJJP_HAEIN] [AC:P44520] [GN:HI0108] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI0108] [SP:P44520] [DB:swissprot] >pir:[LN:I64142]


[AC:I64142] [PN:hypothetical protein HI0108] [OR:Haemophilus influenzae]


[DB:pir2] >gp:[GI:g1573061] [LN:U32696] [AC:U32696:L42023] [PN:conserved


hypothetical protein] [GN:HI0108] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 11 of 163 of the


complete genome.] [NT:similar to GB:U14003 SP:P39402 PID:537207 GB:U00096]


[LE:4095] [RE:4988] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_21603777_f1_144
1499
5271
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_21758468_c3_992
1500
5272
489
162
123
6.9e−08





Description







pir:[LN:B70351] [AC:B70351] [PN:ribosomal-protein-alanine


acetyltransferase] [GN:rimI] [CL:Escherichia coli peptide


N-acetyltransferase rimI] [OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2983204]


[LN:AE000696] [AC:AE000696:AE000657] [PN:ribosomal-protein-alanine


acetyltransferase] [GN:rimI] [OR:Aquifex aeolicus] [DB:genpept-bct2]


[DE:Aquifex aeolicus section 28 of 109 of the complete genome.] [LE:3558]


[RE:4022] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22042128_f3_519
1501
5273
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22069160_c1_652
1502
5274
393
130
623
7.1e−61





Description







sp:[LN:RS12_STAAU] [AC:P48942] [GN:RPSL] [OR:STAPHYLOCOCCUS AUREUS] [DE:30S


RIBOSOMAL PROTEIN S12] [SP:P48942] [DB:swissprot] >gp:[GI:g706921]


[LN:SAU20869] [AC:U20869] [PN:ribosomal protein S12] [GN:rpsL]


[OR:Staphylococcus aureus] [DB genpept-bct2] [DE:Staphylococcus aureus


ribosomal protein S12 (rpsL) gene, completecds, ribosomal protein S7 (rpsG)


and ORF 1 genes, partial cds.] [LE:418] [RE:831] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_2211036_f2_414
1503
5275
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22272200_c1_735
1504
5276
939
312





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22400261_c2_843
1505
5277
834
277
634
4.9e−62





Description







gp:[GI:e139438:g1369939] [LN:BTP9011] [AC:X84706] [PN:major head protein]


[GN:mhp] [OR:Bacteriophage B1] [DB:genpept-phg] [DE:Bacteriophage TP901-1


genomic region.] [LE:360] [RE:1181] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22539010_f3_603
1506
5278
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22539186_f1_67
1507
5279
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22689067_f1_205
1508
5280
1221
406
1218
6.3e−124





Description







sp:[LN:NUPC_BACSU] [AC:P39141] [GN:NUPC] [OR:BACILLUS SUBTILIS]


[DE:PYRIMIDINE NUCLEOSIDE TRANSPORT PROTEIN] [SP:P39141] [DB:swissprot]


>gp:[GI:d1008934:g1408507] [LN:D45912] [AC:D45912] [PN:pyrimidine nucleoside


transport protein] [GN:nupC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:BGSC 1A1 (Marburg 168; trpC2)) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genome sequence between the iol and hut operon,partial and complete


cds.] [LE:20443] [RE:21624] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22694377_c2_776
1509
5281
741
246
762
1.3e−75





Description







pir:[LN:S59955] [AC:S59955] [PN:hypothetical protein 202] [CL:hypothetical


protein MJ0882] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g677850]


[LN:SARPLRPO] [AC:X64172] [PN:hypothetical protein] [GN:ORF202]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.aureus rplL, orf202,


rpoB(rif) and rpoC genes for ribosomalprotein L7/L12, hypothetical protein


ORF202, DNA-directed RNApolymerase beta & beta′ chains.] [LE:399] [RE:1007]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22773302_c1_741
1510
5282
1803
600
1371
3.9e−140





Description







gp:[GI:e286568:g2764983] [LN:BP187PLYH] [AC:Y07740] [PN:cell wall hydrolase


Ply187] [GN:ply187] [OR:Staphylococcus phage 187] [DB:genpept-phg]


[DE:Staphylococcus phage 187 ply187 and hol187 genes.] [LE:222] [RE:2108]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_22790941_c2_847
1511
5283
543
180
143
5.2e−10





Description







gp:[GI:e244714:g2764866] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 17.1] [LE:10481] [RE:11014] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23442135_c1_685
1512
5284
675
224
156
7.9e−11





Description







pir:[LN:F71309] [AC:F71309] [PN:probable phosphoglycolate phosphatase


(gph-2)] [GN:TP0554] [OR:Treponema pallidum subsp. pallidum] [SR:, syphilis


spirochete] [DB:pir2] >gp:[GI:g3322848] [LN:AE001231] [AC:AE001231:AE000520]


[PN:phosphoglycolate phosphatase (gph-2)] [GN:TP0554] [OR:Treponema


pallidum] [DB:genpept-bct2] [DE:Treponema pallidum section 47 of 87 of the


complete genome.] [NT:similar to GB:L42023 SP:P44755 PID:1004013] [LE:1483]


[RE:2151] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23469213_c2_838
1513
5285
411
136





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23477213_c1_701
1514
5286
1011
336
1085
7.9e−110





Description







pir:[LN:S39743] [AC:S39743:D69683] [PN:phosphotransacetylase pta] [GN:pta]


[CL:phosphate acetyltransferase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g580883] [LN:BSGENR] [AC:X73124] [GN:ipa-88d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis genomic region (325 to 333).] [SP:P39646]


[LE:91234] [RE:92205] [DI:direct] >gp:[GI:e1186266:g2636302] [LN:BSUB0020]


[AC:Z99123:AL009126] [PN:phosphotransacetylase] [GN:pta] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.3.1.8] [DE:Bacillus subtilis complete


genome (section 20 of 21): from 3798401to 4010550.] [NT:alternate gene name:


ipa-88d, ywfJ] [SP:P39646] [LE:65754] [RE:66725] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23554700_c3_1002
1515
5287
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23572178_c3_958
1516
5288
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23601637_c2_794
1517
5289
816
271
374
1.7e−34





Description







pir:[LN:S60902] [AC:S60902:S49238:S44071] [PN:CDP-ribitol


pyrophosphorylase] [OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g471234]


[LN:HISBCAL] [AC:X78559] [OR:Haemophilus influenzae] [DB:genpept-bct1]


[DE:H.influenzae DNA for serotype b capsulation locus.] [NT:orf1] [LE:434]


[RE:1858] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23603391_c3_969
1518
5290
294
97
94
0.00030





Description







gp:[GI:e1389970:g4539393] [LN:ATF28A21] [AC:AL035526] [PN:hypothetical


protein] [GN:F28A21.150] [OR:Arabidopsis thaliana] [SR:thale cress]


[DB:genpept-pln1] [DE:Arabidopsis thaliana DNA chromosome 4, BAC clone


F28A21 (ESSAproject).] [LE:62401:62755:63247] [RE:62693:63126:63337]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23617140_c1_686
1519
5291
1404
467
441
6.0e−44





Description







pir:[LN:A69832] [AC:A69832] [PN:long-chain fatty-acid-CoA ligase homolog


yhfT] [GN:yhfT] [CL:acetate--CoA ligase homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183038:g2633372] [LN:BSUB0006] [AC:Z99109:AL009126]


[GN:yhfT] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 6 of 21): from 999501 to1209940.]


[NT:similar to long-chain fatty-acid-CoA ligase] [LE:110451] [RE:111890]


[DI:complement] >gp:[GI:e324999:g2226256] [LN:BSY14084] [AC:Y14084]


[PN:hypothetical protein] [GN:yhfT] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B.subtilis chromosomal DNA, region 78–80 degrees: aprE to comK.]


[NT:similarity to long-chain-acyl-CoA synthetase from] [LE:4879] [RE:6318]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23673313_f2_408
1520
5292
198
65
64
0.0061





Description







gp:[GI:g3329651] [LN:CELT17A3] [AC:AF078787] [GN:T17A3.9] [OR:Caenorhabditis


elegans] [DB:genpept-inv2] [DE:Caenorhabditis elegans cosmid T17A3.]


[LE:15875:16120:16852] [RE:16060:16380:17211] [DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23709631_c1_676
1521
5293
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23712830_c1_713
1522
5294
489
162
227
6.6e−19





Description







gp:[GI:g4049992] [LN:AF077306] [AC:AF077306] [PN:gp157] [OR:Streptococcus


thermophilus bacteriophage Sfi19] [DB:genpept-phg] [DE:Streptococcus


thermophilus bacteriophage Sfi19 gp157, gp233,putative helicase , gp151,


gp271, putative primase, and gp143genes, complete cds.] [NT:orf157] [LE:1]


[RE:474] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23867125_f2_333
1523
5295
204
67
57
0.018





Description







pir:[LN:S21443] [AC:S21443] [PN:hypothetical protein] [OR:Dictyostelium


discoideum] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_23910052_f3_585
1524
5296
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_2392837_c1_732
1525
5297
426
141
226
8.4e−19





Description







gp:[GI:e244844:g2764864] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 16.1] [LE:9632] [RE:10066] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24026077_c3_966
1526
5298
954
317
560
3.4e−54





Description







pir:[LN:S58137] [AC:S58137:S24456] [PN:gene 7 protein] [OR:phage SPP1]


[DB:pir2] >gp:[GI:e244838:g2764848] [LN:BSPP1GENM] [AC:X97918]


[OR:Bacteriophage SPP1] [DB:genpept-phg] [DE:Bacteriophage SPP1 complete


nucleotide sequence.] [NT:gene 7] [LE:3802] [RE:4728] [DI:direct]


>gp:[GI:g1052806] [LN:SPP1HEADG] [AC:X89721] [GN:7] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 head morphogenesis genes 7 to 15.]


[NT:product required for head morphogenesis] [LE:578] [RE:1504] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24026576_c2_854
1527
5299
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24229837_c1_716
1528
5300
243
80
97
3.9e−05





Description







pir:[LN:A56273] [AC:A56273] [PN:hypothetical protein (bacteriocin saiA


3′-region)] [OR:Lactobacillus sake] [DB:pir2] >gp:[GI:g599850]


[LN:LSSAKACLU] [AC:Z46867] [GN:orf1] [OR:Lactobacillus sakei]


[DB:genpept-bct1] [DE:L.sake sakacin A gene cluster.] [LE:5] [RE:268]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24258462_c3_982
1529
5301
336
111
200
4.8e−16





Description







gp:[GI:g928831] [LN:BK5TATTP] [AC:L44593] [FN:unidentified] [OR:Lactococcus


lactis phage BK5-T] [SR:Bacteriophage BK5-T DNA] [DB:genpept-phg]


[DE:Bacteriophage BK5-T ORF′410, 3′ end pf cds, 20 ORFs, repressorprotein,


and Cro repressor protein genes, complete cds, ORF70′gene, 5′ end of cds.]


[NT:ORF95; putative] [LE:7452] [RE:7739] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24275342_c1_718
1530
5302
378
125





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24320256_f1_134
1531
5303
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24328127_f3_452
1532
5304
204
67
154
2.6e−10





Description







sp:[LN:YKGC_ECOLI] [AC:P77212] [GN:YKGC] [OR:ESCHERICHIA COLI]


[DE:INTERGENIC REGION] [SP:P77212] [DB:swissprot] >pir:[LN:H64756]


[AC:H64756] [PN:probable mercury(II) reductase,:ykgC protein] [GN:ykgC]


[OR:Escherichia coli] [EC:1.16.1.1] [DB:pir2] >gp:[GI:g1657503]


[LN:ECU73857] [AC:U73857] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli chromosome minutes 6–8.] [NT:similar to S. aureus


mercury(II) reductase] [LE:26473] [RE:27825] [DI:complement]


>gp:[GI:g1786495] [LN:AE000137] [AC:AE000137:U00096] [PN:putative


oxidoreductase] [GN:ykgC] [FN:putative enzyme; Not classified]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 27 of 400 of the completegenome.] [NT:f450; 35 pct identical (29


gaps) to 430 residues of] [LE:6292] [RE:7644] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24337800_c2_862
1533
5305
1386
461
945
5.4e−95





Description







pir:[LN:T00158] [AC:T00158] [PN:amidase,] [OR:Staphylococcus aureus phage


phi PVL] [EC:3.5.-.-] [DB:pir3] >gp:[GI:d1032859:g3341932] [LN:AB009866]


[AC:AB009866] [PN:amidase (peptidoglycan hydrolase)] [OR:bacteriophage phi


PVL] [SR:bacteriophage phi PVL (specific_host:Staphylococcus aureus ATC]


[DB:genpept-phg] [DE:Bacteriophage phi PVL proviral DNA, complete sequence.]


[NT:orf 25] [LE:20199] [RE:21653] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_2438878_f1_126
1534
5306
213
70
288
2.3e−25





Description







sp:[LN:ARSC_STAAU] [AC:P30330] [GN:ARSC] [OR:STAPHYLOCOCCUS AUREUS]


[DE:ARSENATE REDUCTASE (ARSENICAL PUMP MODIFIER)] [SP:P30330] [DB:swissprot]


>pir:[LN:D41903] [AC:D41903] [PN:arsenate reductase,] [GN:arsC]


[CL:protein-tyrosine-phosphatase, low molecular weight] [OR:Staphylococcus


aureus] [EC:1.-.-.-] [DB:pir1] >gp:[GI:g150729] [LN:PI2ARSRBC] [AC:M86824]


[PN:arsenate reductase] [GN:arsC] [FN:Reduction of arsenate to arsenite]


[OR:Plasmid pI258] [SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid


pI258 arsenic resistance operon (arsRBC) genes, completecds.] [LE:1894]


[RE:2289] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24401462_c3_921
1535
5307
591
196
367
9.6e−34





Description







sp:[LN:YCKF_BACSU] [AC:P42404] [GN:YCKF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.0 KD PROTEIN IN TLPC-SRFAA INTERGENIC REGION (ORF9)]


[SP:P42404] [DB:swissprot] >pir:[LN:H69760] [AC:H69760] [PN:conserved


hypothetical protein yckF] [GN:yckF] [CL:conserved hypothetical protein


MJ1247] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1007003:g1438846]


[LN:BACYCK] [AC:D30762] [PN:unknown] [GN:yckF] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168trpC2) DNA, clone_lib:lambda DASHI]


[DB:genpept-bct1] [DE:Bacillus subtilis DNA around 28 degrees region of


chromosomecontaining yckA-H genes.] [LE:7448] [RE:8005] [DI:complement]


>gp:[GI:e1182297:g2632631] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:yckF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [NT:similar to


hypothetical proteins] [LE:179524] [RE:180081] [DI:complement]


>gp:[GI:d1009614:g1805417] [LN:D50453] [AC:D50453] [GN:yckF] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:53828] [RE:54385] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24407327_c1_643
1536
5308
696
231
892
2.2e−89





Description







pir:[LN:E69694] [AC:E69694:S39861:S40073] [PN:ribosomal protein L1]


[GN:rplA] [CL:Escherichia coli ribosomal protein L1] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182036:g2632370] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:ribosomal protein L1 (BL1)] [GN:rplA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [SP:Q06797] [LE:119107] [RE:119805] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24414050_c2_806
1537
5309
2793
930
4374
0.0





Description







gp:[GI:e1296735:g3201550] [LN:SEY17116] [AC:Y17116] [PN:fibrinogen-binding


protein] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:Staphylococcus epidermidis gene encoding fibrinogen-bindingprotein,


complete CDS.] [LE:38] [RE:3316] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24415875_c1_660
1538
5310
300
99
129
1.7e−07





Description







gp:[GI:g1458327] [LN:CELF08F3] [AC:U64847] [GN:F08F3.4] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid F08F3.] [LE:1515:1817:2044:2841]


[RE:1758:1994:2276:3110] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24422175_f2_402
1539
5311
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24429643_c2_793
1540
5312
222
73
58
0.011





Description







sp:[LN:YA28_PYRHO] [AC:O58584] [GN:PHAL028] [OR:PYROCOCCUS HORIKOSHII]


[DE:HYPOTHETICAL PROTEIN PHAL028] [SP:O58584] [DB:swissprot]


>pir:[LN:B71136] [AC:B71136] [PN:hypothetical protein PH0854] [GN:PH0854]


[CL:hypothetical protein HI0719] [OR:Pyrococcus horikoshii] [DB:pir2]


>gp:[GI:d1030891:g3257265] [LN:AP000003]


[AC:AP000003:AB009484:AB009485:AB009486:AB009487:AB009488:AB009489]


[PN:137aa long hypothetical protein] [GN:PH0854] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept−bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 544001–777000 nt. position(3/7).] [NT:similar to


Swiss_Prot:P37552 percent identity:] [LE:218223] [RE:218636] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24491037_c1_719
1541
5313
495
164





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24500387_c3_961
1542
5314
564
187
85
0.0016





Description







sp:[LN:Y53_BPT3] [AC:P20327] [GN:5.3] [OR:BACTERIOPHAGE T3] [DE:HYPOTHETICAL


GENE 5.3 PROTEIN] [SP:P20327] [DB:swissprot] >pir:[LN:S07514] [AC:S07514]


[PN:gene 5.3 protein] [GN:5.3] [CL:phage T7 gene 2.8 protein] [OR:phage T3]


[DB:pir2] >gp:[GI:g15705] [LN:POT3111G] [AC:X17255] [GN:5.3]


[OR:Bacteriophage T3] [DB:genpept-phg] [DE:Bacteriophage T3 gene 1 to gene


11.] [SP:P20327] [LE:12333] [RE:12638] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_245953_c3_881
1543
5315
579
192
231
2.5e−19





Description







gp:[GI:g1314295] [LN:LMU40604] [AC:U40604] [FN:unknown] [OR:Listeria


monocytogenes] [DB:genpept-bct2] [DE:Listeria monocytogenes ClpC ATPase


(mec) gene, complete cds.] [NT:ORF2; putative 19 kDa protein] [LE:672]


[RE:1196] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24617130_c3_896
1544
5316
3648
1215
5258
0.0





Description







gp:[GI:e187583:g1495791] [LN:SARPOCGEN] [AC:X89233] [PN:DNA-directed RNA


polymerase] [GN:rpoC] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[EC:2.7.7.6] [DE:S.aureus DNA for rpoC gene.] [NT:B′ subunit] [SP:P47770]


[LE:<1] [RE:>3171] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24648937_c3_924
1545
5317
657
218
626
3.4e−61





Description







sp:[LN:UNG_BACSU] [AC:P39615] [GN:UNG:IPA-57D] [OR:BACILLUS SUBTILIS]


[EC:3.2.2.-] [DE:URACIL-DNA GLYCOSYLASE, (UDG)] [SP:P39615] [DB:swissprot]


>pir:[LN:S39712] [AC:S39712:H69728] [PN:uracil-DNA glycosylase, ung]


[GN:ung] [CL:uracil-DNA glycosylase] [OR:Bacillus subtilis] [EC:3.2.2.-]


[DB:pir2] >gp:[GI:g580875] [LN:BSGENR] [AC:X73124] [GN:ipa-57d] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis genomic region (325 to 333).]


[SP:P39615] [LE:59206] [RE:59883] [DI:direct] >gp:[GI:e1186296:g2636332]


[LN:BSUB0020] [AC:Z99123:AL009126] [PN:uracil-DNA glycosylase] [GN:ung]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.2.2.-] [DE:Bacillus subtilis


complete genome (section 20 of 21): from 3798401to 4010550.] [NT:alternate


gene name: ipa-57d, ywdG] [SP:P39615] [LE:98079] [RE:98756] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24650332_c3_962
1546
5318
228
75





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24650468_f3_522
1547
5319
1383
460
711
3.4e−70





Description







gp:[GI:d1037645:g4126638] [LN:AB016282] [AC:AB016282] [PN:site-specific


recombinase for integration and] [OR:bacteriophage phi-105]


[SR:bacteriophage phi-105 DNA] [DB:genpept-phg] [DE:Bacteriophage phi-105


DNA, complete sequence.] [NT:ORF3] [LE:25528] [RE:26952] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24656552_c2_772
1548
5320
150
49
149
1.2e−10





Description







sp:[LN:RL33_THEMA] [AC:P35873] [GN:RPMG] [OR:THERMOTOGA MARITIMA] [DE:50S


RIBOSOMAL PROTEIN L33] [SP:P35873] [DB:swissprot] >gp:[GI:g407022]


[LN:TMNUSGGE] [AC:Z11839] [PN:RIBOSOMAL PROTEIN L33] [OR:Thermotoga


maritima] [DB:genpept-bct1] [DE:T.maritima nusG gene and genes for ribosomal


proteins.] [SP:P35873] [LE:579] [RE:728] [DI:direct] >gp:[GI:g4980957]


[LN:AE001723] [AC:AE001723:AE000512] [PN:ribosomal protein L33] [GN:TM0451]


[OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga maritima section


35 of 136 of the complete genome.] [NT:similar to SP:P35873 GB:Z11839


PID:407022] [LE:5319] [RE:5468] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24667192_f2_350
1549
5321
183
60
201
1.7e−15





Description







sp:[LN:ARSB_STAAU] [AC:P30329] [GN:ARSB] [OR:STAPHYLOCOCCUS AUREUS]


[DE:ARSENICAL PUMP MEMBRANE PROTEIN] [SP:P30329] [DB:swissprot]


>pir:[LN:C41903] [AC:C41903] [PN:arsenical pump membrane protein] [GN:arsB]


[CL:arsenical pump membrane protein] [OR:Staphylococcus aureus] [DB:pir1]


>gp:[GI:g150728] [LN:PI2ARSRBC] [AC:M86824] [PN:arsenic efflux pump protein]


[GN:arsB] [FN:arsenic efflux pump component (membrane] [OR:Plasmid pI258]


[SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 arsenic


resistance operon (arsRBC) genes, completecds.] [LE:587] [RE:1876]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24803462_f1_9
1550
5322
861
286
463
6.4e−44





Description







sp:[LN:YH17_SYNY3] [AC:P73846] [GN:SLR1717] [OR:SYNECHOCYSTIS SP] [SR:PCC


6803,] [DE:HYPOTHETICAL 30.2 KD PROTEIN SLR1717] [SP:P73846] [DB:swissprot]


>pir:[LN:S75043] [AC:S75043] [PN:hypothetical protein slr1717]


[OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1018638:g1652988] [LN:D90910] [AC:D90910:AB001339] [PN:hypothetical


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 12/27,


1430419–1576592.] [NT:ORF_ID:slr1717] [LE:37735] [RE:38541] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24823437_f3_521
1551
5323
495
164
71
0.044





Description







gp:[GI:g46550] [LN:SACP221] [AC:X02166] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus plasmid pC221.] [NT:pot. reading-frame


C (aa 1–90) (4555 is 2nd base in] [SP:P03866] [LE:4287] [RE:>4555]


[DI:direct] >gp:[GI:e190060:g1333818] [LN:SAPC221] [AC:X02529]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus


plasmid pC221 complete DNA sequence.] [NT:pot. orfB (aa 1–92) (4557 is 2nd


base in codon)] [SP:P03866] [LE:4289] [RE:>4557] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24854637_c2_804
1552
5324
903
300
404
1.1e−37





Description







pir:[LN:C70070] [AC:C70070] [PN:conserved hypothetical protein ywtE]


[GN:ywtE] [CL:hypothetical protein ywpJ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184491:g2636110] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywtE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [NT:similar to


hypothetical proteins] [LE:97330] [RE:98190] [DI:direct]


>gp:[GI:e308093:g1894770] [LN:BSZ92954] [AC:Z92954] [GN:ywtE] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis yws[A,B,C,D,E,F,G] and gerBC


genes.] [NT:product similar to Bacillus subtilis YxeH and YcsE] [LE:4292]


[RE:5152] [DI:complement] >gp:[GI:e1184491:g2636110] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywtE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:similar to hypothetical proteins] [LE:97330]


[RE:98190] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_24855325_c3_936
1553
5325
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25398262_f3_622
1554
5326
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25478801_f3_446
1555
5327
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25509692_c3_972
1556
5328
498
165
151
7.4e−11





Description







gp:[GI:e244846:g2764870] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 17.5] [LE:11342] [RE:11881] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25578827_c3_897
1557
5329
261
86
334
3.0e−30





Description







sp:[LN:YBXF_STAAU] [AC:Q53602] [OR:STAPHYLOCOCCUS AUREUS] [DE:PROBABLE


RIBOSOMAL PROTEIN IN RPSL 5′REGION (FRAGMENT)] [SP:Q53602] [DB:swissprot]


>gp:[GI:g706920] [LN:SAU20869] [AC:U20869] [PN:unknown] [FN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


ribosomal protein S12 (rpsL) gene, completecds, ribosomal protein S7 (rpsG)


and ORF 1 genes, partial cds.] [NT:ORF 1] [LE:<1] [RE:320] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25579662_f3_575
1558
5330
1221
406
849
8.0e−85





Description







pir:[LN:H69817] [AC:H69817] [PN:aminoacylase homolog yhaA] [GN:yhaA]


[CL:hippurate hydrolase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183009:g2633343] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhaA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to1209940.] [NT:similar to


aminoacylase] [LE:80123] [RE:81313] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25660937_c3_990
1559
5331
498
165
175
3.5e−13





Description







sp:[LN:OPUC_BACSU] [AC:P46922] [GN:OPUAC] [OR:BACILLUS SUBTILIS] [DE:GLYCINE


BETAINE-BINDING PROTEIN PRECURSOR] [SP:P46922] [DB:swissprot]


>pir:[LN:I40537] [AC:I40537:F69669] [PN:glycine betaine ABC transporter


(glycine betaine-binding protein) opuAC precursor] [GN:opuAC] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182252:g2632586] [LN:BSUB0002]


[AC:Z99105:AL009126] [PN:glycine betaine ABC transporter (glycine]


[GN:opuAC] [FN:glycine betaine transport (osmoprotection)] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21): from 194651 to415810.] [SP:P46922] [LE:128023] [RE:128904]


[DI:direct] >gp:[GI:d1009569:g1805372] [LN:D50453] [AC:D50453] [PN:glycine


betain-binding protein precursor] [GN:opuAC] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis DNA for 25–36 degree region containing theamyE-srfA region,


complete cds.] [LE:2326] [RE:3207] [DI:direct] >gp:[GI:g984805]


[LN:BSU17292] [AC:U17292] [PN:glycine betaine-binding protein precursor]


[GN:opuAC] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


ATPase (opuAA), transmembrane protein (opuAB) andglycine betaine-binding


protein precursor (opuAC) genes, completecds.] [LE:2332] [RE:3213]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25667753_c2_773
1560
5332
564
187
906
7.3e−91





Description







sp:[LN:NUSG_STACA] [AC:P36264] [GN:NUSG] [OR:STAPHYLOCOCCUS CARNOSUS]


[DE:TRANSCRIPTION ANTITERMINATION PROTEIN NUSG] [SP:P36264] [DB:swissprot]


>pir:[LN:S38870] [AC:S38870] [PN:transcription antitermination factor nusG]


[GN:nusG] [CL:transcription antitermination factor nusG] [OR:Staphylococcus


carnosus] [DB:pir2] >gp:[GI:g426473] [LN:SCSECE] [AC:X76134] [GN:nusG]


[OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:S.carnosus secE, nusG and


rplK genes.] [SP:P36264] [LE:331] [RE:879] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_25972086_f1_108
1561
5333
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26173287_c3_970
1562
5334
363
120
103
9.0e−06





Description







gp:[GI:e244712:g2764863] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 16] [LE:9322] [RE:9651] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26206687_c1_642
1563
5335
210
69
278
2.6e−24





Description







sp:[LN:SECE_STAAU] [AC:O06442] [GN:SECE] [OR:STAPHYLOCOCCUS AUREUS]


[DE:PREPROTEIN TRANSLOCASE SECE SUBUNIT] [SP:O06442] [DB:swissprot]


>gp:[GI:g2078376] [LN:SAU96619] [AC:U96619] [PN:SecE] [GN:secE]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus NCTC


8325 SecE (secE), NusG (nusG) and RplK(rplK) genes, complete cds.] [LE:31]


[RE:213] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26290912_f3_547
1564
5336
882
293
665
2.5e−65





Description







pir:[LN:H69759] [AC:H69759] [PN:conserved hypothetical protein yciA]


[GN:yciA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182286:g2632620]


[LN:BSUB0002] [AC:Z99105:AL009126] [GN:yciA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21): from 194651 to415810.] [NT:similar to hypothetical proteins]


[LE:169177] [RE:170094] [DI:direct] >gp:[GI:d1009603:g1805406] [LN:D50453]


[AC:D50453] [GN:yciA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


25–36 degree region containing theamyE-srfA region, complete cds.]


[LE:43480] [RE:44397] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26306568_c1_724
1565
5337
330
109
83
0.019





Description







gp:[GI:g4894306] [LN:AF065404] [AC:AF065404] [PN:pXO1-90] [OR:Bacillus


anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence plasmid PX01,


complete sequence.] [LE:106772] [RE:108730] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26350125_c2_834
1566
5338
252
83
79
0.041





Description







pir:[LN:C69161] [AC:C69161] [PN:sensory transduction histidine kinase]


[GN:MTH468] [OR:Methanobacterium thermoautotrophicum] [DB:pir2]


>gp:[GI:g2621537] [LN:AE000831] [AC:AE000831:AE000666] [PN:sensory


transduction histidine kinase] [GN:MTH468] [OR:Methanobacterium


thermoautotrophicum] [DB:genpept-bct1] [DE:Methanobacterium


thermoautotrophicum from bases 404817 to 415582(section 37 of 148) of the


complete genome.] [NT:Function Code:12.12 - Cell Processes, Broad] [LE:3329]


[RE:4993] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26360327_c1_725
1567
5339
552
183
515
2.0e−49





Description







pir:[LN:T00186] [AC:T00186] [PN:dUTP pyrophosphatase,] [OR:Staphylococcus


aureus phage phi PVL] [EC:3.6.1.23] [DB:pir3] >gp:[GI:d1032887:g3341960]


[LN:AB009866] [AC:AB009866] [PN:dUTPase] [OR:bacteriophage phi PVL]


[SR:bacteriophage phi PVL (specific_host:Staphylococcus aureus ATC]


[DB:genpept-phg] [DE:Bacteriophage phi PVL proviral DNA, complete sequence.]


[NT:orf 53] [LE:37579] [RE:38106] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26369082_c2_837
1568
5340
252
83





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26375952_c1_714
1569
5341
627
208
223
1.7e−18





Description







gp:[GI:e1254413:g2924242] [LN:BTP901456] [AC:Y14232] [PN:hypothetical


protein] [OR:Bacteriophage TP901-1] [DB:genpept-phg] [DE:Bacteriophage


TP901-1 ORFs 1–12.] [NT:ORF11] [LE:5545] [RE:6168] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26569377_c2_810
1570
5342
639
212
625
4.4e−61





Description







sp:[LN:HUMS_BACSU] [AC:P42405:O31477] [GN:YCKG] [OR:BACILLUS SUBTILIS]


[EC:4.1.2.-] [DE:3-HEXULOSE 6-PHOSPHATE FORMALDEHYDE LYASE)]


[SP:P42405:O31477] [DB:swissprot] >pir:[LN:A69761] [AC:A69761]


[PN:D-arabino 3-hexulose 6-phosphate formaldeh homolog yckG] [GN:yckG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182298:g2632632] [LN:BSUB0002]


[AC:Z99105:AL009126] [GN:yckG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2 of 21):


from 194651 to415810.] [NT:similar to D-arabino 3-hexulose 6-phosphate]


[SP:P42405] [LE:180087] [RE:180719] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26734625_f1_89
1571
5343
351
116
210
4.1e−17





Description







gp:[GI:e308969:g2292761] [LN:BSFI21LYS] [AC:X95646] [PN:cI-like repressor]


[GN:orf127] [OR:Streptococcus thermophilus bacteriophage Sfi21]


[DB:genpept-phg] [DE:Streptococcus thermophilus bacteriophage Sfi21 DNA;


lysogenymodule, 8141 bp.] [NT:putative] [LE:5693] [RE:6076] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26772801_f1_91
1572
5344
504
167
168
6.1e−12





Description







pir:[LN:A71608] [AC:A71608] [PN:probable integral membrane protein


PFB0710c] [GN:PFB0710c] [OR:Plasmodium falciparum] [DB:pir2]


>gp:[GI:g3845257] [LN:AE001413] [AC:AE001413:AE001362] [PN:predicted


integral membrane protein] [GN:PFB0710c] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv2] [DE:Plasmodium


falciparum chromosome 2, section 50 of 73 of thecomplete sequence.]


[NT:predicted by GlimmerM] [LE:4351] [RE:5562] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26839638_c1_750
1573
5345
1314
437
1429
2.8e−146





Description







sp:[LN:YWFO_BACSU] [AC:P39651] [GN:YWFO:IPA-93D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 51.0 KD PROTEIN IN PTA 3′REGION] [SP:P39651] [DB:swissprot]


>pir:[LN:G70056] [AC:G70056:S39748] [PN:ywfO protein:hypothetical protein


ipa-93d] [GN:ywfO] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186260:g2636296] [LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywfO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 20 of 21): from 3798401to 4010550.] [NT:alternate


gene name: ipa-93d; similar to] [SP:P39651] [LE:59934] [RE:61235]


[DI:complement] >gp:[GI:e267329:g1561567] [LN:BSUWFO] [AC:Z80355]


[PN:Unknown] [GN:ywfO] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B.subtilis ywfO, ywgA and ywgB genes.] [SP:P39651] [LE:267] [RE:1568]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_26854757_c3_886
1574
5346
660
219
975
3.6e−98





Description







sp:[LN:CYSE_STAXY] [AC:P77985] [GN:CYSE] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:2.3.1.30] [DE:SERINE ACETYLTRANSFERASE, (SAT)] [SP:P77985]


[DB:swissprot] >gp:[GI:e261410:g1514656] [LN:SXCYSEREG] [AC:Y07614]


[PN:serine O-acetyltransferase] [GN:cysE] [OR:Staphylococcus xylosus]


[DB:genpept-bct1] [EC:2.3.1.30] [DE:S.xylosus cysE gene, genomic region.]


[SP:P77985] [LE:707] [RE:1357] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_27318_c2_877
1575
5347
1035
344
1198
8.3e−122





Description







sp:[LN:ADH1_ZYMMO] [AC:P20368] [GN:ADHA] [OR:ZYMOMONAS MOBILIS] [EC:1.1.1.1]


[DE:ALCOHOL DEHYDROGENASE I, (ADH I)] [SP:P20368] [DB:swissprot]


>pir:[LN:A35260] [AC:A35260:E40649:A24801] [PN:alcohol dehydrogenase, 1]


[GN:adhA] [CL:alcohol dehydrogenase:long-chain alcohol dehydrogenase


homology] [OR:Zymomonas mobilis] [EC:1.1.1.1] [DB:pir1] >gp:[GI:g155571]


[LN:ZMOADHA] [AC:M32100] [OR:Zymomonas mobilis] [SR:Z.mobilis (strain CP4)


DNA] [DB:genpept-bct1] [DE:Z.mobilis alcohol dehydrogenase I (adhA) gene,


complete cds.] [NT:alcohol dehydrogenase I (adhA) (EC 1.1.1.1)] [LE:218]


[RE:1231] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_276590_c2_821
1576
5348
375
124
279
2.0e−24





Description







pir:[LN:H70070] [AC:H70070] [PN:hypothetical protein ywzC] [GN:ywzC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186261:g2636297] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywzC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401to 4010550.] [LE:61397] [RE:61621] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_2847887_f2_351
1577
5349
576
191
797
2.6e−79





Description







sp:[LN:ARSB_STAAU] [AC:P30329] [GN:ARSB] [OR:STAPHYLOCOCCUS AUREUS]


[DE:ARSENICAL PUMP MEMBRANE PROTEIN] [SP:P30329] [DB:swissprot]


>pir:[LN:C41903] [AC:C41903] [PN:arsenical pump membrane protein] [GN:arsB]


[CL:arsenical pump membrane protein] [OR:Staphylococcus aureus] [DB:pir1]


>gp:[GI:g150728] [LN:PI2ARSRBC] [AC:M86824] [PN:arsenic efflux pump protein]


[GN:arsB] [FN:arsenic efflux pump component (membrane] [OR:Plasmid pI258]


[SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 arsenic


resistance operon (arsRBC) genes, completecds.] [LE:587] [RE:1876]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_29320127_f3_442
1578
5350
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_29694425_f1_142
1579
5351
852
283
418
3.8e−39





Description







gp:[GI:g1502421] [LN:BSU59433] [AC:U59433] [PN:3-ketoacyl-acyl carrier


protein reductase] [GN:fabG] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis PlsX (plsX), malonyl-CoA:Acyl carrier


proteintransacylase (fabD) and 3-ketoacyl-acyl carrier protein


reductase(fabG) genes, complete cds, and acyl carrier protein (acpP)


gene,partial cds.] [NT:also called 3-oxoacyl-acyl carrier protein] [LE:1813]


[RE:2553] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_30178137_c1_706
1580
5352
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_30267937_f3_532
1581
5353
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_30742332_c2_841
1582
5354
228
75
76
0.012





Description







pir:[LN:D71169] [AC:D71169] [PN:hypothetical protein PH0552] [GN:PH0552]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030584:g3256958]


[LN:AP000002]


[AC:AP000002:AB009475:AB009476:AB009477:AB009478:AB009479:AB009480]


[PN:163aa long hypothetical protein] [GN:PH0552] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 287001–544000 nt. position(2/7).] [NT:similar to


PIR:F64411 percent identity:33.898 in] [LE:205880] [RE:206371] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_31256916_c2_774
1583
5355
507
168
681
5.1e−67





Description







pir:[LN:S38871] [AC:S38871] [PN:ribosomal protein L11] [GN:rplK]


[CL:Escherichia coli ribosomal protein L11] [OR:Staphylococcus carnosus]


[DB:pir2] >gp:[GI:g581638] [LN:SCSECE] [AC:X76134] [PN:L11 protein]


[GN:rplK] [OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:S.carnosus


secE, nusG and rplK genes.] [SP:P36254] [LE:1061] [RE:1483] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_31334838_c3_993
1584
5356
519
172
544
1.7e−52





Description







pir:[LN:E70057] [AC:E70057] [PN:hypothetical protein ywhD] [GN:ywhD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e267625:g1565239] [LN:BSTHRZ]


[AC:Z80360] [PN:Unknown] [GN:ywhD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B.subtilis thrZ downstream chromosomal region.] [LE:3358] [RE:3876]


[DI:direct] >gp:[GI:e1186252:g2636288] [LN:BSUB0020] [AC:Z99123:AL009126]


[GN:ywhD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 20 of 21): from 3798401to 4010550.]


[LE:52838] [RE:53356] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3134386_f3_616
1585
5357
228
75





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_31353377_c2_785
1586
5358
474
157
703
2.4e−69





Description







gp:[GI:d1039003:g4512400] [LN:AB017508] [AC:AB017508] [GN:rpsG] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, completecds.]


[NT:rpsG homologue (identity of 84% to B. subtilis)] [LE:8367] [RE:8837]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_31562_f2_326
1587
5359
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_32031437_c1_736
1588
5360
2706
901
1163
4.3e−118





Description







sp:[LN:VG12_BPPZA] [AC:P07537] [GN:12] [OR:BACTERIOPHAGE PZA] [DE:PRE-NECK


APPENDAGE PROTEIN (LATE PROTEIN GP12)] [SP:P07537] [DB:swissprot]


>pir:[LN:WMBP12] [AC:G24831] [PN:gene 12 protein] [GN:12] [CL:phage PZA


gene 12 protein] [OR:phage PZA] [DB:pir1] >gp:[GI:g216061] [LN:PZACG]


[AC:M11813:M13904:M13905] [PN:pre-neck appendage protein] [OR:Bacteriophage


PZA] [SR:Bacteriophage PZA DNA] [DB:genpept-phg] [DE:Bacteriophage PZA (from


B.subtilis), complete genome.] [LE:11428] [RE:13992] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_32251_f1_98
1589
5361
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_32315907_f3_595
1590
5362
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_32595152_c1_739
1591
5363
402
133





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3306563_c1_688
1592
5364
366
121





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33235050_f2_235
1593
5365
507
168
92
0.0014





Description







pir:[LN:D70063] [AC:D70063] [PN:hypothetical protein ywnA] [GN:ywnA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184569:g2636188] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywnA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091to 3809700.] [LE:168142] [RE:168543] [DI:complement]


>gp:[GI:e269486:g1592697] [LN:BSUEROP] [AC:Y08559] [PN:Unknown] [GN:ywnA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis urease operon and


downstream DNA.] [LE:2688] [RE:3089] [DI:direct] >gp:[GI:e1184569:g2636188]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywnA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of


21): from 3597091to 3809700.] [LE:168142] [RE:168543] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33394062_f1_179
1594
5366
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33414693_c2_820
1595
5367
1089
362
150
6.9e−16





Description







sp:[LN:KIME_METJA] [AC:Q58487] [GN:MJ1087] [OR:METHANOCOCCUS JANNASCHII]


[EC:2.7.1.36] [DE:MEVALONATE KINASE, (MK)] [SP:Q58487] [DB:swissprot]


>pir:[LN:F64435] [AC:F64435] [PN:mevalonate kinase,] [OR:Methanococcus


jannaschii] [EC:2.7.1.36] [DB:pir2] [MP:FOR1026197-1027135]


>gp:[GI:g1591731] [LN:U67551] [AC:U67551:L77117] [PN:mevalonate kinase]


[GN:MJ1087] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 93 of 150 of the complete genome.]


[NT:similar to PID:1184118 SP:Q50559 GB:AE000666] [LE:5625] [RE:6563]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33600035_c1_653
1596
5368
2118
705
3427
0.0





Description







gp:[GI:e1422302:g4582216] [LN:SAU237696] [AC:AJ237696] [PN:elongation factor


G (EF-G)] [GN:fus] [FN:translation elongation factor] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus fus gene.] [LE:83]


[RE:2164] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33756503_c2_830
1597
5369
273
90
265
6.2e−23





Description







gp:[GI:e1285113:g3005826] [LN:BPA2INT] [AC:Y12813] [PN:hypothetical protein]


[GN:orfB] [OR:Lactobacillus casei bacteriophage A2] [DB:genpept-phg]


[DE:Bacteriophage A2 rep, xis and int genes.] [LE:852] [RE:1097]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33786251_c2_865
1598
5370
246
81





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_33869193_c1_726
1599
5371
183
60
130
1.2e−08





Description







sp:[LN:RINB_BPPHA] [AC:Q03183] [GN:RINB] [OR:BACTERIOPHAGE PHI-11]


[DE:TRANSCRIPTIONAL ACTIVATOR RINB] [SP:Q03183] [DB:swissprot]


>pir:[LN:A49703] [AC:A49703] [PN:int gene activator RinB] [OR:phage phi-11]


[DB:pir2] >gp:[GI:g166161] [LN:BPHRINAB] [AC:L07580] [PN:Bacteriophage


phi-11 int gene activator] [GN:rinB] [FN:Activate bacteriophage phi-11 int


gene] [OR:Staphylococcus bacteriophage phi 11] [SR:Bacteriophage phi-11 DNA]


[DB:genpept-phg] [DE:Bacteriophage phi-11 rinA and rin B genes, required for


theactivation of Staphylococcal phage phi-11 int expression.] [LE:60]


[RE:248] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34025066_c2_856
1600
5372
642
213
89
8.2e−07





Description







gp:[GI:e247172:g1926370] [LN:LBPHIG1E] [AC:X98106] [GN:Rorf232]


[OR:Bacteriophage phigle] [DB:genpept-phg] [DE:Lactobacillus bacteriophage


phigle complete genomic DNA.] [LE:4579] [RE:5277] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34242202_c3_956
1601
5373
270
89
78
0.017





Description







sp:[LN:VP8_VARV] [AC:P33039] [GN:L4R:M4R] [OR:VARIOLA VIRUS] [DE:STRUCTURAL


PROTEIN VP8 PRECURSOR (25 KD MAJOR CORE PROTEIN) (P25K)] [SP:P33039]


[DB:swissprot] >pir:[LN:A36845] [AC:A36845:533090] [PN:M4R


protein:structural protein VP8] [CL:vaccinia virus 28K protein] [OR:variola


virus] [DB:pir2] >gp:[GI:g262435] [LN:S55844] [AC:S55844] [PN:glycoprotein


VP8] [GN:L4R] [OR:Variola major virus] [SR:Variola major virus India-1967]


[DB:genpept-vr1] [DE:G9R . . . H7R [variola major virus, India-1967, Genomic, 19


genes,18029 nt].] [NT:This sequence comes from FIG. 2.] [LE:3187] [RE:3942]


[DI:direct] >gp:[GI:g438994] [LN:VARCG] [AC:L22579] [OR:Variola major virus]


[SR:Variola major virus (strain Bangladesh-1975) DNA] [DB:genpept-vr1]


[DE:Variola major virus (strain Bangladesh-1975) complete genome.]


[NT:homolog of vaccinia virus CDS L4R (structural] [LE:70583] [RE:71338]


[DI:direct] >gp:[GI:g297256] [LN:VVCGAA] [AC:X69198] [GN:M4R] [OR:Variola


virus] [DB:genpept-vr1] [DE:Variola virus DNA complete genome.] [SP:P33039]


[LE:69950] [RE:70705] [DI:direct] >gp:[GI:g62352] [LN:VVHINDQKH] [AC:X67119]


[PN:structural protein VP8] [GN:L4R COP] [OR:Variola virus] [DB:genpept-vr1]


[DE:Variola virus (HindIII-Q,K,H,M,L,I,F genome fragment) genes.]


[SP:P33039] [LE:19835] [RE:20590] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34242202_f1_156
1602
5374
210
69
69
0.047





Description







sp:[LN:Y076_MYCPN] [AC:P75555] [OR:MYCOPLASMA PNEUMONIAE] [DE:HYPOTHETICAL


PROTEIN MG076 HOMOLOG] [SP:P75555] [DB:swissprot] >pir:[LN:S73943]


[AC:S73943] [PN:MG076 homolog G07_orf138] [OR:Mycoplasma pneumoniae]


[SR:ATCC 29342, , ATCC 29342] [SR:ATCC 29342,] [DB:pir2] >gp:[GI:g1674320]


[LN:MPAE000059] [AC:AE000059:U00089] [GN:G07_orf138] [OR:Mycoplasma


pneumoniae] [DB:genpept-bct2] [DE:Mycoplasma pneumoniae section 59 of 63 of


the complete genome.] [NT:MG076 homolog, from M. genitalium] [LE:168]


[RE:584] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34407053_f3_433
1603
5375
783
260
564
1.3e−54





Description







pir:[LN:S76797] [AC:S76797] [PN:hypothetical protein] [CL:conserved


hypothetical protein MJ0165: phosphoribosylaminoimidazole carboxylase


catalytic chain homology] [OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803]


[SR:PCC 6803,] [DB:pir2] >gp:[GI:d1019442:g1653798] [LN:D90916]


[AC:D90916:AB001339] [PN:hypothetical protein] [OR:Synechocystis sp.]


[SR:Synechocystis sp. (strain:PCC6803) DNA] [DB:genpept-bct1]


[DE:Synechocystis sp. PCC6803 complete genome, 26/27, 3270710–3418851.]


[NT:ORF_ID:s111489] [LE:107538] [RE:108377] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34609703_c3_963
1604
5376
198
65
110
1.6e−06





Description







pir:[LN:T00185] [AC:T00185] [PN:hypothetical protein 52] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032886:g3341959] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 52] [LE:37356] [RE:37604]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_34651555_c1_734
1605
5377
3123
1040
267
2.8e−24





Description







gp:[GI:e244718:g2764872] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 18] [LE:12264] [RE:13373] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_35162800_c3_885
1606
5378
1506
501
1701
4.2e−175





Description







sp:[LN:SYE_BACSU] [AC:P22250] [GN:GLTX] [OR:BACILLUS SUBTILIS] [EC:6.1.1.17]


[DE:(GLURS)] [SP:P22250] [DB:swissprot] >pir:[LN:SYBSET]


[AC:A36090:S66121:E69635] [PN:glutamate--tRNA ligase, gltX:glutamyl-tRNA


synthetase gltX] [GN:gltX] [CL:glutamate--tRNA ligase:glutamine--tRNA


ligase homology] [OR:Bacillus subtilis] [EC:6.1.1.17] [DB:pir1]


>gp:[GI:d1005868:g467480] [LN:BAC180K] [AC:D26185] [PN:glutamyl-tRNA


synthetase] [GN:gltX] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:174646] [RE:176097]


[DI:direct] >gp:[GI:g143006] [LN:BACGLTXA] [AC:M55073:J05647] [PN:transfer


RNA-Gln synthetase] [GN:gltX] [OR:Bacillus subtilis] [SR:Bacillus subtilis


168T DNA] [DB:genpept-bct1] [EC:6.1.1.17] [DE:Bacillus subtilis


glutamyl-tRNA synthetase gene, complete cds.] [LE:1] [RE:1452] [DI:direct]


>gp:[GI:g289282] [LN:BACGLUSYN] [AC:L14580] [PN:glutamyl-tRNA synthetase]


[GN:gltX] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain 168T) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis glutamyl-tRNA transferase (gltX),


serineacetyltransferase (cysE), and cysteinyl-tRNA synthetase (cysS)genes,


complete cds's.] [LE:1706] [RE:3157] [DI:direct] >gp:[GI:e1182025:g2632359]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:glutamyl-tRNA synthetase] [GN:gltX]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.17] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to213080.] [SP:P22250] [LE:111044]


[RE:112495] [DI:direct] >gp:[GI:g2653659] [LN:U49789] [AC:U49789]


[PN:glutamyl-tRNA synthetase] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis glutamyl-tRNA synthetase gene, complete cds.] [LE:1]


[RE:1452] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_35350062_f2_317
1607
5379
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_35445875_c1_728
1608
5380
159
52
53
0.016





Description







pir:[LN:C70306] [AC:C70306] [PN:conserved hypothetical protein aq_064c]


[GN:aq_064c] [CL:conserved hypothetical secreted protein HP0320]


[OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2982828] [LN:AE000672]


[AC:AE000672:AE000657] [PN:hypothetical protein] [GN:aq_064c] [OR:Aquifex


aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 4 of 109 of the


complete genome.] [LE:2190] [RE:2423] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_36054813_c2_833
1609
5381
387
128
79
0.034





Description







pir:[LN:S41186] [AC:S43812:S41186] [PN:gene 39 protein] [OR:phage SPP1]


[DB:pir2] >gp:[GI:e244746:g2764918] [LN:BSPP1GENM] [AC:X97918]


[OR:Bacteriophage SPP1] [DB:genpept-phg] [DE:Bacteriophage SPP1 complete


nucleotide sequence.] [NT:gene 39] [LE:36342] [RE:36722] [DI:direct]


>gp:[GI:g439643] [LN:BSSPP1] [AC:X67865] [GN:39] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:B.subtilis phage SPP1 DNA sequence coding for products


required forreplication initiation.] [LE:6073] [RE:6453] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_36134715_c3_887
1610
5382
771
256
666
2.0e−65





Description







sp:[LN:YACO_BACSU] [AC:Q06753] [GN:YACO] [OR:BACILLUS SUBTILIS] [EC:2.1.1.-]


[DE:HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE YACO,] [SP:Q06753]


[DB:swissprot] >pir:[LN:S66124] [AC:S66124:G69741:I40000] [PN:conserved


hypothetical protein yacO] [GN:yacO] [CL:conserved hypothetical protein


HI0860] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005871:g467483]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:178868]


[RE:179617] [DI:direct] >gp:[GI:e1182029:g2632363] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:yacO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [NT:similar to hypothetical proteins] [SP:Q06753]


[LE:115266] [RE:116015] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_36228563_c3_960
1611
5383
699
232
110
0.00063





Description







gp:[GI:g2865254] [LN:AF008237] [AC:AF008237:L28928:L28929:L28930:L28931]


[PN:unknown] [OR:Mitochondrion Chlamydomonas eugametos] [SR:Chlamydomonas


eugametos] [DB:genpept-pln2] [DE:Chlamydomonas eugametos mitochondrion,


complete genome.] [NT:orf306; intronic ORF; formerly i3; in frame with]


[LE:<8260] [RE:9180] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_36521067_f3_540
1612
5384
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3908462_c1_703
1613
5385
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3909643_f2_217
1614
5386
1197
398
719
4.8e−71





Description







gp:[GI:g4981502] [LN:AE001759] [AC:AE001759:AE000512] [PN:conserved


hypothetical protein] [GN:TM0964] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 71 of 136 of the complete genome.]


[NT:similar to GP:2622211 percent identity: 60.38;] [LE:5733] [RE:6941]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3912503_c1_698
1615
5387
1500
499
331
1.5e−28





Description







pir:[LN:E69825] [AC:E69825] [PN:amino acid transporter homolog yhdG]


[GN:yhdG] [CL:arginine permease] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182947:g2633281] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to1209940.] [NT:similar to


amino acid transporter] [LE:23330] [RE:24727] [DI:direct]


>gp:[GI:e325026:g2226202] [LN:BSY14082] [AC:Y14082] [PN:hypothetical


protein] [GN:yhdG] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 72 to 75 degrees: spoVRto sspB.]


[NT:Similarity to human retroviral receptor (PIR] [LE:9978] [RE:11375]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3945333_c2_782
1616
5388
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_3961590_c3_922
1617
5389
1164
387
669
9.5e−66





Description







pir:[LN:H69831] [AC:H69831] [PN:acetyl-CoA C-acetyltransferase homolog


yhfS] [GN:yhfS] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183037:g2633371]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhfS] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to1209940.] [NT:similar to acetyl-CoA


C-acetyltransferase] [LE:109360] [RE:110454] [DI:complement]


>gp:[GI:e324998:g2226255] [LN:BSY14084] [AC:Y14084] [PN:hypothetical


protein] [GN:yhfS] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis


chromosomal DNA, region 78–80 degrees: aprE to comK.] [NT:similarity to


acetyl-CoAuacetyltransferases (ThiL,] [LE:3788] [RE:4882] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_39635_f2_316
1618
5390
1245
414
972
7.4e−98





Description







sp:[LN:YKGC_ECOLI] [AC:P77212] [GN:YKGC] [OR:ESCHERICHIA COLI]


[DE:INTERGENIC REGION] [SP:P77212] [DB:swissprot] >pir:[LN:H64756]


[AC:H64756] [PN:probable mercury(II) reductase,:ykgC protein] [GN:ykgC]


[OR:Escherichia coli] [EC:1.16.1.1] [DB:pir2] >gp:[GI:g1657503]


[LN:ECU73857] [AC:U73857] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli chromosome minutes 6–8.] [NT:similar to S. aureus


mercury(II) reductase] [LE:26473] [RE:27825] [DI:complement]


>gp:[GI:g1786495] [LN:AE000137] [AC:AE000137:U00096] [PN:putative


oxidoreductase] [GN:ykgC] [FN:putative enzyme; Not classified]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 27 of 400 of the completegenome.] [NT:f450; 35 pct identical (29


gaps) to 430 residues of] [LE:6292] [RE:7644] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4031952_c2_775
1619
5391
501
166
545
1.3e−52





Description







pir:[LN:D69695] [AC:D69695] [PN:ribosomal protein L10 (BL5) rplJ] [GN:rplJ]


[CL:Escherichia coli ribosomal protein L10] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:d1009473:g786163] [LN:BACRPL2] [AC:D50303] [PN:Ribosomal


Protein L10] [GN:rplJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genes for


ribosomal proteins L1, L10 and L12,partial and complete cds.] [LE:347]


[RE:847] [DI:direct] >gp:[GI:e1182037:g2632371] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:ribosomal protein L10 (BL5)] [GN:rplJ] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to213080.] [SP:P42923] [LE:120057] [RE:120557] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_40676_c1_644
1620
5392
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4078305_c3_927
1621
5393
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4078375_f1_6
1622
5394
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4078518_f1_143
1623
5395
843
280
521
4.6e−50





Description







sp:[LN:YXEK_BACSU] [AC:P54950] [GN:YXEK:LP9C] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 49.3 KD PROTEIN IN IDH-DEOR INTERGENIC REGION] [SP:P54950]


[DB:swissprot] >pir:[LN:E70075] [AC:E70075] [PN:monooxygenase homolog yxeK]


[GN:yxeK] [CL:nitrilotriacetate monooxygenase] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1184677:g2636498] [LN:BSUB0021] [AC:Z99124:AL009126]


[GN:yxeK] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 21 of 21): from 3999281to 4214814.]


[NT:similar to monooxygenase] [SP:P54950] [LE:60328] [RE:61653]


[DI:complement] >gp:[GI:d1008923:g1408496] [LN:D45912] [AC:D45912] [GN:yxeK]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1 (Marburg 168;


trpC2)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence between


the iol and hut operon,partial and complete cds.] [NT:homologous to dszA


gene product of Rhodococcus sp.] [LE:9823] [RE:11148] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4181527_c1_720
1624
5396
447
148
93
0.0045





Description







sp:[LN:V17_BPT7] [AC:P03781] [GN:1.7] [OR:BACTERIOPHAGE T7] [DE:GENE 1.7


PROTEIN] [SP:P03781] [DB:swissprot] >pir:[LN:W1BP77]


[AC:G43002:G43004:S42296:A04406] [PN:gene 1.7 protein] [GN:1.7] [CL:phage


T7 gene 1.7 protein] [OR:phage T7] [DB:pir1] [MP:20.42–21.89]


>gp:[GI:g15512] [LN:PET7XX] [AC:V01127] [OR:Bacteriophage T7]


[DB:genpept-phg] [DE:Left end of bacteriophage T7 genome. Includes the


reading frames ofthe genes 0.3, 0.4, 0.5, 0.6, 0.65, 0.7, 1, 1.1, 1.2, 1.3


(earlyproteins) and 1.4, 1.5, 1.6, 1.7, 2, 2.5, 2.8, 3, 3.5, 4A and 4B(late


proteins). Gene 1 is the T7 RNA polymerase.] [NT:1.7 protein] [SP:P03781]


[LE:8166] [RE:8756] [DI:direct] >gp:[GI:g15576] [LN:T7CG]


[AC:V01146:J02518:X00411] [OR:Bacteriophage T7] [DB:genpept-phg] [DE:Genome


of bacteriophage T7.] [NT:gene 1.7] [SP:P03781] [LE:8166] [RE:8756]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4181577_c3_955
1625
5397
1251
416
465
3.9e−44





Description







pir:[LN:H70427] [AC:H70427] [PN:replicative DNA helicase] [GN:dnaB]


[CL:phage P22 gene 12 protein] [OR:Aquifex aeolicus] [DB:pir2]


>gp:[GI:g2983861] [LN:AE000742] [AC:AE000742:AE000657] [PN:replicative DNA


helicase] [GN:dnaB] [OR:Aquifex aeolicus] [DB:genpept-bct2] [DE:Aquifex


aeolicus section 74 of 109 of the complete genome.] [LE:2249] [RE:3655]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4329063_c3_900
1626
5398
1245
414
1786
4.1e−184





Description







gp:[GI:d1039005:g4512402] [LN:AB017508] [AC:AB017508] [GN:tufA] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, completecds.]


[NT:tufA homologue (identity of 91% to B. subtilis)] [LE:11150] [RE:12340]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4334510_c2_822
1627
5399
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4398453_f3_561
1628
5400
477
158
279
4.5e−24





Description







sp:[LN:NTAA_CHEHE] [AC:P54989] [GN:NTAA:NMOA] [OR:CHELATOBACTER HEINTZII]


[EC:1.14.13.-] [DE:MONOOXYGENASE COMPONENT A) (NTA-MO A)] [SP:P54989]


[DB:swissprot] >gp:[GI:g1119211] [LN:CBYNMOB] [AC:L49438] [GN:nmoA]


[FN:component A of NTA monooxygenase] [OR:Chelatobacter heintzii]


[DB:genpept-bct1] [DE:Chelatobacter heintzii NTA monooxygenase component B


(nmoB), NTAmonooxygenase component A (nmoA), regulatory protein (nmoR)


andtransposase (nmoT) genes, complete cds.] [LE:1323] [RE:2684] [DI:direct]


>gp:[GI:g1480205] [LN:CHU39411] [AC:U39411] [PN:NTA monooxygenase component


A] [GN:ntaA] [OR:Chelatobacter heintzii] [SR:Chelatobacter heintzii


strain=ATCC 29600] [DB:genpept-bct1] [DE:Chelatobacter heintzii


nitrilotriacetate monooxygenase genes,putative regulatory protein (ntaR),


NTA monooxygenase component A(ntaA) and component B (ntaB) genes, complete


cds.] [LE:1123] [RE:2484] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_446062_c1_748
1629
5401
690
229
1165
2.6e−118





Description







sp:[LN:TRA2_STAAU] [AC:P19380] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE-LIKE ELEMENT IS431MEC] [SP:P19380] [DB:swissprot]


>pir:[LN:S12093] [AC:S12093:JU0116] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46602] [LN:SAIS431M]


[AC:X53818:M18438] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.


aureus IS431mec gene associated with methicillin resistance.] [NT:putative


transposase (AA 1–224)] [SP:P19380] [LE:272] [RE:946] [DI:direct]


>gp:[GI:e1237900:g2791991] [LN:SAMECAR1I] [AC:Y14051] [PN:putative


transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus mecA, mecR1, mecI genes and ORF168, ORF142,ORF44, ORF145 and ORF224.]


[NT:ORF224] [LE:8096] [RE:8770] [DI:direct] >gp:[GI:d1046034:g5360858]


[LN:D86934] [AC:D86934] [PN:transposase for insertion sequence-like element]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N062] [LE:48054] [RE:48728]


[DI:direct] >gp:[GI:d1046044:g5360868] [LN:D86934] [AC:D86934]


[PN:transposase for insertion sequence-like element] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of


N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N070] [LE:53400] [RE:54074] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4725006_c3_981
1630
5402
537
178





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4727203_c3_925
1631
5403
369
122
86
0.032





Description







gp:[GI:d1004088:g505029] [LN:MUSMNS1] [AC:D14849] [PN:meiosis-specific


nuclear structural protein 1] [OR:Mus musculus] [SR:Mus mucsulus (strain


ddY) testis pachytene spermatocyte cDNA t] [DB:genpept-rod] [DE:Mouse mRNA


for meiosis-specific nuclear structural protein 1(MNS1), complete cds.]


[LE:180] [RE:1655] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4735833_f2_359
1632
5404
711
236
464
5.0e−44





Description







sp:[LN:YAAG_BACSU] [AC:P37530] [GN:YAAG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 24.1 KD PROTEIN IN SERS-DNAZ INTERGENIC REGION] [SP:P37530]


[DB:swissprot] >pir:[LN:S66045] [AC:S66045:G69736] [PN:deoxypurine kinase


subunit homolog yaaG] [GN:yaaG] [CL:Lactobacillus acidophilus


deoxyadenosine kinase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005793:g467405] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:86746] [RE:87369] [DI:complement] >gp:[GI:e1181948:g2632282]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yaaG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to213080.] [NT:similar to deoxypurine kinase subunit]


[SP:P37530] [LE:23144] [RE:23767] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4741068_c3_967
1633
5405
609
202
210
4.1e−17





Description







gp:[GI:e247154:g1926352] [LN:LBPHIG1E] [AC:X98106] [PN:minor capsid protein]


[GN:Rorf204] [OR:Bacteriophage phigle] [DB:genpept-phg] [DE:Lactobacillus


bacteriophage phigle complete genomic DNA.] [LE:24554] [RE:25168]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4741077_c3_952
1634
5406
687
228
238
4.5e−20





Description







gp:[GI:e247139:g1926334] [LN:LBPHIG1E] [AC:X98106] [GN:Rorf242]


[OR:Bacteriophage phigle] [DB:genpept-phg] [DE:Lactobacillus bacteriophage


phigle complete genomic DNA.] [LE:37600] [RE:38328] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4876967_c3_913
1635
5407
579
192
168
1.2e−12





Description







pir:[LN:G69824] [AC:G69824] [PN:conserved hypothetical protein yhdA]


[GN:yhdA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182923:g2633257]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhdA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to1011250.] [NT:similar to hypothetical proteins]


[LE:207082] [RE:207606] [DI:direct] >gp:[GI:e1182935:g2633269] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhdA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to1209940.] [NT:similar to hypothetical proteins] [LE:10402]


[RE:10926] [DI:direct] >gp:[GI:e324946:g2226142] [LN:BSY14079] [AC:Y14079]


[PN:hypothetical protein] [GN:yhdA] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 75 degrees: glpPFKDoperon and


downstream.] [NT:similarity to the hypothetical protein YIEF from]


[LE:10050] [RE:10574] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4882760_c3_1001
1636
5408
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4886075_f3_559
1637
5409
678
225
794
5.4e−79





Description







sp:[LN:YAAF_BACSU] [AC:P37529] [GN:YAAF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 25.4 KD PROTEIN IN SERS-DNAZ INTERGENIC REGION] [SP:P37529]


[DB:swissprot] >pir:[LN:S66044] [AC:S66044:F69736] [PN:deoxypurine kinase


subunit homolog yaaF] [GN:yaaF] [CL:Lactobacillus acidophilus


deoxyadenosine kinase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005792:g467404] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:86096] [RE:86749] [DI:complement] >gp:[GI:e1181947:g2632281]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yaaF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to213080.] [NT:similar to deoxypurine kinase subunit]


[SP:P37529] [LE:22494] [RE:23147] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4892127_c1_746
1638
5410
2706
901
1557
7.6e−160





Description







pir:[LN:H69780] [AC:H69780] [PN:antibiotic transport-associated protein


homolog ydfJ] [GN:ydfJ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020130:g1881350] [LN:AB001488] [AC:AB001488] [GN:ydfJ]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the regionbetween 35 and 47 degree.] [NT:PROBABLE TRANSPORT PROTEIN, SIMILAR


TO ANTIBIOTIC] [LE:122935] [RE:125109] [DI:direct]


>gp:[GI:e1182509:g2632843] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydfJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to611850.] [NT:similar to


antibiotic transport-associated protein] [LE:186681] [RE:188855] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4901703_c2_792
1639
5411
510
169
95
0.0031





Description







pir:[LN:D69887] [AC:D69887] [PN:conserved hypothetical protein ynaD]


[GN:ynaD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1750115] [LN:BSU66480]


[AC:U66480] [PN:YnaD] [GN:ynaD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis SpoVK (spoVK), YnbA (ynbA), YnbB (ynbB), GlnR(glnR),


glutamine synthetase (glnA), YnaA (ynaA), YnaB (ynaB), YnaC(ynaC), YnaD


(ynaD), YnaE (ynaE), YnaF (ynaF), YnaG (ynaG), YnaH(ynaH), YnaI (ynaI), YnaJ


(ynaJ), xylan beta-1,4-xylosidase (xynB),xylose repressor (xylR), xylose


isomerase (xylA), xylulose kinase(xylB), YncB (yncB), YncC (yncC), YncD


(yncD) and YncE (yncE)genes, complete cds.] [LE:9169] [RE:9681] [DI:direct]


>gp:[GI:e1183411:g2634136] [LN:BSUB0010] [AC:Z99113:AL009126] [GN:ynaD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21): from 1781201to 2014980.] [NT:similar to


hypothetical proteins] [LE:101220] [RE:101732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4946962_c3_907
1640
5412
1068
355
183
1.0e−11





Description







gp:[GI:g3264834] [LN:AF072541] [AC:AF072541] [PN:xylitol dehydrogenase]


[GN:xdh] [FN:xylose utilisation] [OR:Galactocandida mastotermitis]


[DB:genpept-pln2] [EC:1.1.1.9] [DE:Galactocandida mastotermitis xylitol


dehydrogenase (xdh) gene,complete cds.] [NT:a member of the medium chain


dehydrogenase] [LE:301:373] [RE:312:1422] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_4964677_c2_832
1641
5413
444
147
257
4.3e−22





Description







pir:[LN:T00179] [AC:T00179] [PN:ssDNA-binding protein] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032880:g3341953] [LN:AB009866]


[AC:AB009866] [PN:ssDNA binding protein] [OR:bacteriophage phi PVL]


[SR:bacteriophage phi PVL (specific_host:Staphylococcus aureus ATC]


[DB:genpept-phg] [DE:Bacteriophage phi PVL proviral DNA, complete sequence.]


[NT:orf 45] [LE:34657] [RE:35127] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_5080092_c2_809
1642
5414
744
247
529
6.5e−51





Description







sp:[LN:YBFT_BACSU] [AC:O31458] [GN:YBFT] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 27.3 KD PROTEIN IN GLTP-CWLJ INTERGENIC REGION] [SP:O31458]


[DB:swissprot] >pir:[LN:E69750] [AC:E69750] [PN:glucosamine-6-phosphate


isomerase homolog ybfT] [GN:ybfT] [CL:glucosamine-6-phosphate isomerase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1034099:g3599658] [LN:AB006424]


[AC:AB006424] [GN:ybfT] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23degree.] [LE:59813] [RE:60562] [DI:complement]


>gp:[GI:e1182188:g2632522] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ybfT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [NT:similar to


glucosamine-6-phosphate isomerase] [SP:O31458] [LE:62162] [RE:62911]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_5125076_f3_531
1643
5415
810
269
873
2.3e−87





Description







sp:[LN:YWFI_BACSU] [AC:P39645] [GN:YWFI:IPA-87R] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 29.5 KD PROTEIN IN ROCC-PTA INTERGENIC REGION] [SP:P39645]


[DB:swissprot] >pir:[LN:S39742] [AC:S39742:B70056] [PN:ywfI


protein:hypothetical protein ipa-87r] [GN:ywfI] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g414011] [LN:BSGENR] [AC:X73124] [GN:ipa-87r] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis genomic region (325 to 333).]


[SP:P39645] [LE:90200] [RE:90964] [DI:complement] >gp:[GI:e1186267:g2636303]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywfI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401to 4010550.] [NT:alternate gene name: ipa-87r;


similar to] [SP:P39645] [LE:66995] [RE:67759] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_5251588_c1_747
1644
5416
582
193
87
0.0010





Description







gp:[GI:g1079814] [LN:S79230] [AC:S79230] [PN:BM1P1] [GN:CYP106] [OR:Bacillus


megaterium] [DB:genpept-bct2] [DE:CYP106=BM1P2 orf . . . CYP106=P450BM-1 orf


{regulatory regions}[Bacillus megaterium, mRNA Partial, 3 genes, 1400 nt].]


[NT:positive transcription factor involved in] [LE:763] [RE:1059]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_5258515_c3_965
1645
5417
1314
437
1298
2.1e−132





Description







sp:[LN:TERL_BPSPP] [AC:P54308] [GN:2] [OR:BACTERIOPHAGE SPP1] [DE:TERMINASE


LARGE SUBUNIT (G2P)] [SP:P54308] [DB:swissprot] >pir:[LN:S24451] [AC:S24451]


[PN:terminase] [OR:phage SPP1] [DB:pir2] >gp:[GI:e244468:g2764840]


[LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1] [DB:genpept-phg]


[DE:Bacteriophage SPP1 complete nucleotide sequence.] [NT:gene 2]


[SP:P54308] [LE:307] [RE:1575] [DI:direct] >gp:[GI:g15466] [LN:NCSPP116]


[AC:X56064:S35313] [PN:terminase] [GN:SPP1 gene 2] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:B. subtilis bacteriophage SPP1 genes for terminase and


portalprotein.] [SP:P54308] [LE:633] [RE:1901] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_5370450_f3_432
1646
5418
1284
427
305
3.6e−27





Description







pir:[LN:A69256] [AC:A69256] [PN:hypothetical protein AF0049]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2650605] [LN:AE001103]


[AC:AE001103:AE000782] [PN:A. fulgidus predicted coding region AF0049]


[GN:AF0049] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus


fulgidus section 4 of 172 of the complete genome.] [NT:hypothetical protein;


identified by GeneMark;] [LE:7830] [RE:9068] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_56626_c2_855
1647
5419
336
111
84
0.0020





Description







gp:[GI:g1209829] [LN:BBU45421] [AC:U45421] [GN:REP+] [OR:Borrelia


burgdorferi] [SR:Lyme disease spirochete strain=297] [DB:genpept-bct1]


[DE:Borrelia burgdorferi 2.9-1 locus, ORF 5–8, ORF-A-D, REP+, REP−,


andlipoprotein (LP) genes, complete cds.] [NT:repeat motif-containing gene]


[LE:4602] [RE:5156] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_587811_f1_125
1648
5420
345
114





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6056625_c1_755
1649
5421
258
85





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6149152_c3_884
1650
5422
1389
462
1543
2.3e−158





Description







sp:[LN:RADA_BACSU] [AC:P37572] [GN:RADA:SMS] [OR:BACILLUS SUBTILIS] [DE:DNA


REPAIR PROTEIN RADA HOMOLOG (DNA REPAIR PROTEIN SMS HOMOLOG)] [SP:P37572]


[DB:swissprot] >pir:[LN:S66116] [AC:S66116:I40509:A69709] [PN:DNA repair


protein homolog sms] [GN:sms] [CL:DNA repair protein sms] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1005863:g467475] [LN:BAC180K] [AC:D26185]


[PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:169695] [RE:171071]


[DI:direct] >gp:[GI:e1182020:g2632354] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:DNA repair protein homolog] [GN:sms] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [NT:alternate gene name: yacJ] [SP:P37572] [LE:106093]


[RE:107469] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6250050_f2_233
1651
5423
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6406337_f3_448
1652
5424
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6407136_c2_840
1653
5425
1455
484
667
1.6e−65





Description







sp:[LN:SIZ_BPSPP] [AC:P54309] [GN:6:SIZ] [OR:BACTERIOPHAGE SPP1] [DE:PORTAL


PROTEIN (PORTAL VERTEX PROTEIN) (GP6)] [SP:P54309] [DB:swissprot]


>pir:[LN:S21805] [AC:S21805:S24455:S36725] [PN:portal protein:gene 6


protein] [GN:6] [OR:phage SPP1] [DB:pir2] >gp:[GI:e244702:g2764847]


[LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1] [DB:genpept-phg]


[DE:Bacteriophage SPP1 complete nucleotide sequence.] [NT:gene 6]


[SP:P54309] [LE:2334] [RE:3845] [DI:direct] >gp:[GI:g15470] [LN:NCSPP116]


[AC:X56064:S35313] [PN:portal protein] [GN:SPP1 gene 6] [OR:Bacteriophage


SPP1] [DB:genpept-phg] [DE:B. subtilis bacteriophage SPP1 genes for


terminase and portalprotein.] [SP:P54309] [LE:2660] [RE:4171] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6443763_c2_769
1654
5426
408
135
298
2.0e−26





Description







pir:[LN:C69742] [AC:C69742] [PN:conserved hypothetical protein yazC]


[GN:yazC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182028:g2632362]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yazC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to213080.] [NT:similar to hypothetical proteins] [LE:114851]


[RE:115282] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_661062_c1_641
1655
5427
1440
479
1568
5.2e−161





Description







sp:[LN:SYC_BACSU] [AC:Q06752] [GN:CYSS:SPNA] [OR:BACILLUS SUBTILIS]


[EC:6.1.1.16] [DE:(CYSRS)] [SP:Q06752] [DB:swissprot] >pir:[LN:C53402]


[AC:C53402:S44447:S66123:B69612] [PN:cysteine--tRNA ligase,


cysS:cysteinyl-tRNA synthetase cysS] [GN:cysS] [CL:cysteine--tRNA ligase]


[OR:Bacillus subtilis] [EC:6.1.1.16] [DB:pir1] >gp:[GI:d1005870:g467482]


[LN:BAC180K] [AC:D26185] [PN:cysteinyl-tRNA synthetase] [GN:cysS]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:177049] [RE:178449] [DI:direct] >gp:[GI:g289284]


[LN:BACGLUSYN] [AC:L14580] [PN:cysteinyl-tRNA synthetase] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain 168T) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis glutamyl-tRNA transferase (gltX),


serineacetyltransferase (cysE), and cysteinyl-tRNA synthetase (cysS)genes,


complete cds's.] [LE:4109] [RE:5509] [DI:direct] >gp:[GI:g499303] [LN:BSCTS]


[AC:X73989] [PN:cysteine--tRNA ligase] [GN:SPNA/CYSS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.16] [DE:B.subtilis gene for cysteinyl-tRNA


synthetase.] [SP:Q06752] [LE:321] [RE:1721] [DI:direct]


>gp:[GI:e1182027:g2632361] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:cysteinyl-tRNA synthetase] [GN:cysS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.16] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to213080.] [NT:alternate gene name: snpA]


[SP:Q06752] [LE:113447] [RE:114847] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6725707_c2_770
1656
5428
552
183
327
1.7e−29





Description







sp:[LN:YACP_BACSU] [AC:P37574] [GN:YACP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 19.7 KD PROTEIN IN CYSS 3′REGION] [SP:P37574]


[DB:swissprot] >pir:[LN:S66125] [AC:S66125:H69741] [PN:conserved


hypothetical protein yacP] [GN:yacP] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005872:g467484] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:179624] [RE:180136] [DI:direct] >gp:[GI:e1182030:g2632364]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yacP] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to213080.] [NT:similar to hypothetical proteins] [SP:P37574]


[LE:116022] [RE:116534] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6757338_c3_906
1657
5429
1089
362
1129
1.7e−114





Description







pir:[LN:H69750] [AC:H69750] [PN:branched-chain amino acid aminotransferase


homolog ybgE] [GN:ybgE] [CL:branched-chain-amino-acid transaminase BAT1]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1034103:g3599662] [LN:AB006424]


[AC:AB006424] [GN:ybgE] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23degree.] [LE:62005] [RE:63075] [DI:direct]


>gp:[GI:e1182191:g2632525] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ybgE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [NT:similar to


branched-chain amino acid] [LE:64355] [RE:65425] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_6932750_f2_348
1658
5430
378
125
266
4.8e−23





Description







pir:[LN:C69906] [AC:C69906] [PN:hypothetical protein yojF] [GN:yojF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185419:g2634340] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yojF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171to 2207900.] [LE:121397] [RE:121747] [DI:complement]


>gp:[GI:g3169322] [LN:AF026147] [AC:AF026147] [PN:YojF] [GN:yojF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


YojA (yojA), YojB (yojB), YojC (yojC), YojD(yojD), YojE (yojE), YojF (yojF),


YojG (yojG), YojH (yojH), YojI(yojI), YojJ (yojJ), YojK (yojK), YojL (yojL),


YojM (yojM), YojN(yojN), and YojO (yojO) genes, complete cds; and OdhA


(odhA) gene,partial cds.] [LE:3518] [RE:3868] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7032188_f2_246
1659
5431
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7068751_c3_984
1660
5432
945
314
974
4.6e−98





Description







sp:[LN:IOLS_BACSU] [AC:P46336] [GN:IOLS:SS92ER] [OR:BACILLUS SUBTILIS]


[DE:IOLS PROTEIN (VEGETATIVE PROTEIN 147) (VEG147)] [SP:P46336]


[DB:swissprot] >pir:[LN:D69646] [AC:D69646] [PN:myo-inositol catabolism


iolS] [GN:iolS] [CL:conserved hypothetical protein YPL088w] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1022457:g904205] [LN:AB005554]


[AC:AB005554:D45242:D31629] [GN:iolS] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:BGSC 1A1) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


genomic DNA, 36 kb region between gnt and ioloperons.] [NT:plausibly


involved in inositol catabolism] [LE:32539] [RE:33471] [DI:complement]


>gp:[GI:e1184703:g2636524] [LN:BSUB0021] [AC:Z99124:AL009126] [GN:iolS]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 21 of 21): from 3999281to 4214814.] [NT:alternate gene name:


yxbF; myo-inositol catabolism] [SP:P46336] [LE:85121] [RE:86053] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7160287_c2_805
1661
5433
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7164191_c2_798
1662
5434
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7229680_c1_634
1663
5435
492
163
377
8.3e−35





Description







sp:[LN:CTSR_BACSU] [AC:P37568] [GN:CTSR] [OR:BACILLUS SUBTILIS]


[DE:TRANSCRIPTIONAL REGULATOR CTSR] [SP:P37568] [DB:swissprot]


>pir:[LN:S66112] [AC:S66112:D69610] [PN:transcription repressor of class


III stress genes ctsR] [GN:ctsR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005859:g467471] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:165048] [RE:165512] [DI:direct] >gp:[GI:e1182016:g2632350]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:transcriptional regulator] [GN:ctsR]


[FN:negative regulation of class III stress genes] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [NT:alternate gene name: yacG] [SP:P37568] [LE:101446]


[RE:101910] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_7275263_c1_733
1664
5436
441
146
158
1.3e−11





Description







gp:[GI:e244713:g2764865] [LN:BSPP1GENM] [AC:X97918] [OR:Bacteriophage SPP1]


[DB:genpept-phg] [DE:Bacteriophage SPP1 complete nucleotide sequence.]


[NT:gene 17] [LE:10063] [RE:10467] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_782590_f1_114
1665
5437
171
56
56
0.044





Description







gp:[GI:e289995:g1764015] [LN:CICOS41] [AC:Z83760] [PN:COS41.5] [OR:Ciona


intestinalis] [DB:genpept-inv1] [DE:Ciona intestinalis DNA sequence from


cosmid COS41.] [NT:weak similarity to membrane transport proteins]


[LE:11497:13519:14634] [RE:13190:13703:14681] [DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_783425_c1_675
1666
5438
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_818942_c3_989
1667
5439
477
158
173
3.4e−17





Description







sp:[LN:OPUC_BACSU] [AC:P46922] [GN:OPUAC] [OR:BACILLUS SUBTILIS] [DE:GLYCINE


BETAINE-BINDING PROTEIN PRECURSOR] [SP:P46922] [DB:swissprot]


>pir:[LN:I40537] [AC:I40537:F69669] [PN:glycine betaine ABC transporter


(glycine betaine-binding protein) opuAC precursor] [GN:opuAC] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182252:g2632586] [LN:BSUB0002]


[AC:Z99105:AL009126] [PN:glycine betaine ABC transporter (glycine]


[GN:opuAC] [FN:glycine betaine transport (osmoprotection)] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21): from 194651 to415810.] [SP:P46922] [LE:128023] [RE:128904]


[DI:direct] >gp:[GI:d1009569:g1805372] [LN:D50453] [AC:D50453] [PN:glycine


betain-binding protein precursor] [GN:opuAC] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis DNA for 25–36 degree region containing theamyE-srfA region,


complete cds.] [LE:2326] [RE:3207] [DI:direct] >gp:[GI:g984805]


[LN:BSU17292] [AC:U17292] [PN:glycine betaine-binding protein precursor]


[GN:opuAC] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


ATPase (opuAA), transmembrane protein (opuAB) andglycine betaine-binding


protein precursor (opuAC) genes, completecds.] [LE:2332] [RE:3213]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_819575_c2_850
1668
5440
1857
618
158
1.4e−08





Description







gp:[GI:e247163:g1926361] [LN:LBPHIG1E] [AC:X98106] [GN:Rorf372]


[OR:Bacteriophage phigle] [DB:genpept-phg] [DE:Lactobacillus bacteriophage


phigle complete genomic DNA.] [LE:13476] [RE:14594] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_821012_c1_664
1669
5441
1725
574
469
6.8e−44





Description







pir:[LN:S49240] [AC:S49240] [PN:hypothetical protein 3 (capsulation locus)]


[OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g547513] [LN:HIACAPIID]


[AC:Z37516] [OR:Haemophilus influenzae] [DB:genpept-bct1] [DE:Haemophilus


influenzae serotype a capsulation locus region II DNA.] [NT:orf3] [LE:2838]


[RE:5207] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_833125_f3_493
1670
5442
285
94





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_892842_c3_926
1671
5443
387
128
337
1.4e−30





Description







sp:[LN:YWDK_BACSU] [AC:P39619] [GN:YWDK:IPA-61D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 12.0 KD PROTEIN IN UNG-ROCA INTERGENIC REGION] [SP:P39619]


[DB:swissprot] >pir:[LN:S39716] [AC:S39716:F70054] [PN:ywdK


protein:hypothetical protein ipa-61d] [GN:ywdK] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g413985] [LN:BSGENR] [AC:X73124] [GN:ipa-61d] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis genomic region (325 to 333).]


[SP:P39619] [LE:63169] [RE:63510] [DI:direct] >gp:[GI:e1186292:g2636328]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywdK] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401to 4010550.] [NT:alternate gene name: ipa-61d;


similar to] [SP:P39619] [LE:94452] [RE:94793] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_972187_f2_208
1672
5444
924
307
834
3.1e−83





Description







gp:[GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst),enterotoxin (ent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_9765677_c3_949
1673
5445
804
267
226
8.4e−19





Description







gp:[GI:g928839] [LN:BK5TATTP] [AC:L44593] [FN:unidentified] [OR:Lactococcus


lactis phage BK5-T] [SR:Bacteriophage BK5-T DNA] [DB:genpept-phg]


[DE:Bacteriophage BK5-T ORF′410, 3′ end pf cds, 20 ORFs, repressorprotein,


and Cro repressor protein genes, complete cds, ORF70′gene, 5′ end of cds.]


[NT:ORF266; putative] [LE:14882] [RE:15682] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_977181_c1_702
1674
5446
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_978377_c1_689
1675
5447
264
87
75
0.0037





Description







sp:[LN:VG05_VACCC] [AC:P21026] [GN:G5R] [OR:VACCINIA VIRUS] [SR:COPENHAGEN,]


[DE:PROTEIN G5] [SP:P21026] [DB:swissprot] >pir:[LN:A42512] [AC:A42512]


[PN:GSR protein] [OR:vaccinia virus] [DB:pir2] >gp:[GI:g335417] [LN:VACCG]


[AC:M35027] [OR:Vaccinia virus] [SR:Vaccinia virus (strain Copenhagen) DNA,


clone VC-2] [DB:genpept-vr1] [DE:Vaccinia virus, complete genome.] [NT:G5R;


putative] [LE:75218] [RE:76522] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_9819392_c3_908
1676
5448
789
262
179
6.4e−13





Description







gp:[GI:g1463023] [LN:CELF45E1] [AC:U28732] [GN:F45E1.3] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-inv1]


[DE:Caenorhabditis elegans cosmid F45E1.] [LE:13873:15298:15662:15851]


[RE:14009:15615:15806:16024] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_9924055_c2_765
1677
5449
216
71





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_9926903_c2_835
1678
5450
309
102
79
0.0032





Description







pir:[LN:F45681] [AC:F45681] [PN:orf 61.2] [OR:phage T2] [DB:pir2]


>gp:[GI:g298525] [LN:S57515] [AC:S57515] [GN:orf 61.2] [OR:coliphage T2]


[DB:genpept-phg] [DE:orf 61.2 {intergenic region between 41 and 61}


[bacteriophage T2,Genomic, 323 nt].] [NT:This sequence comes from FIG. A3.]


[LE:12] [RE:323] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000987_994052_c3_979
1679
5451
1536
511
130
0.00012





Description







gp:[GI:g4049717] [LN:AF063866] [AC:AF063866] [PN:ORF MSV156 hypothetical


protein] [GN:MSV156] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vr1] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:140126] [RE:143509] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_22939705_c3_35
1680
5452
402
133
99
0.00020





Description







gp:[GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst),enterotoxin (ent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_235762_f2_11
1681
5453
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_23626577_c2_32
1682
5454
210
69
56
0.0035





Description







gp:[GI:d1009788:g829068] [LN:SHFORF] [AC:D50601] [PN:ORF10] [OR:Shigella


sonnei] [SR:Shigella sonnei (individual_isolate HW383) DNA, clone pJK1142]


[DB:genpept-bct1] [DE:Shigella sonnei DNA for 26 ORFs, complete cds.]


[LE:5933] [RE:6628] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_24297062_f1_1
1683
5455
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_24642202_c1_30
1684
5456
648
215
822
5.8e−82










Description


gp:[GI:g2689554] [LN:U93688] [AC:U93688] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus toxic shock syndrome toxin-1


(tst),enterotoxin (ent), and integrase (int) genes, complete cds.] [NT:orf7]


[LE:6109] [RE:6708] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_25665687_c2_33
1685
5457
876
291
322
5.6e−29










Description


gp:[GI:g2689560] [LN:U93688] [AC:U93688] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus toxic shock syndrome toxin-1


(tst),enterotoxin (ent) , and integrase (int) genes, complete cds.]


[NT:orf13] [LE:9717] [RE:10004] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value














AI7503000988_34428905_f1_3
1686
5458
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_35428187_c3_37
1687
5459
438
145










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_36601678_c1_29
1688
5460
1728
575
102
0.010










Description


gp:[GI:g1004289] [LN:PPRNAE14B] [AC:Z50050] [PN:Xylanase B] [OR:Penicillium


purporogenum] [DB:genpept-pln1] [EC:3.2.1.8] [DE:P.purpurogenum mRNA for


endo-1,4-beta-xylanase.] [LE:11] [RE:637] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_4303175_f1_10
1689
5461
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000988_9923176_f3_20
1690
5462
162
53
56
0.013










Description


sp:[LN:NU5M_CAEEL] [AC:P24896] [GN:ND5] [OR:CAENORHABDITIS ELEGANS]


[EC:1.6.5.3] [DE:NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5,] [SP:P24896]


[DB:swissprot] >pir:[LN:S26037] [AC:S26037:S25810] [PN:NADH dehydrogenase


(ubiquinone), chain 5] [GN:ND5] [CL:NADH dehydrogenase (ubiquinone) chain


5] [OR:mitochondrion Caenorhabditis elegans] [EC:1.6.5.3] [DB:pir2]


>gp:[GI:g515886] [LN:MTCE] [AC:X54252:S93745] [OR:Mitochondrion


Caenorhabditis elegans] [SR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:C.


elegans complete mitochondrial genome.] [NT:ND5 protein (AA 1–527)]


[SP:P24896] [LE:11691] [RE:13274] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10003756_f3_471
1691
5463
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10193763_c2_864
1692
5464
186
61










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10194713_f1_31
1693
5465
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10241287_c2_822
1694
5466
663
220
74
0.037










Description


gp:[GI:g924349] [LN:HIV1U13473] [AC:U13473] [PN:envelope glycoprotein V1V2


region] [GN:env] [OR:Human immunodeficiency virus type 1] [DB:genpept-vr1]


[DE:Human immunodeficiency virus type 1 isolate 037 clone 03 fromUganda,


envelope glycoprotein (env) gene, V1V2 region, partial cds.] [LE:<1]


[RE:>285] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10268812_c2_820
1695
5467
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10360902_f3_536
1696
5468
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1042202_c3_948
1697
5469
1074
357
625
4.4e−61










Description


sp:[LN:POTD_ECOLI] [AC:P23861] [GN:POTD] [OR:ESCHERICHIA COLI]


[DE:SPERMIDINE/PUTRESCINE-BINDING PERIPLASMIC PROTEIN PRECURSOR (SPBP)]


[SP:P23861] [DB:swissprot] >pir:[LN:D40840] [AC:D40840:H64856]


[PN:spermidine/putrescine-binding protein precursor:spermidine/putrescine


transport protein D] [GN:potD] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:d1036929:g1651550] [LN:D90747] [AC:D90747:AB001340]


[PN:Spermidine/putrescine transport protein D] [GN:potD] [OR:Escherichia


coli] [SR:Escherichia coli(strain:K12) DNA, clone:Kohara clone #238]


[DB:genpept-bct1] [DE:Escherichia coli genomic DNA. (25.2–25.6 min).]


[NT:ORF_ID:o238#12; similar to PIR Accession Number] [LE:13470] [RE:14516]


[DI:complement] >gp:[GI:g1787367] [LN:AE000212] [AC:AE000212:U00096]


[PN:spermidine/putrescine periplasmic transport] [GN:potD] [FN:transport;


Transport of small molecules: Amino] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 102 of 400 of the completegenome.]


[NT:f348; 100 pct identical to POTD_ECOLI SW: P23861] [LE:7785] [RE:8831]


[DI:complement] >gp:[GI:g147329] [LN:ECOPOTABCD] [AC:M64519] [PN:transport


protein] [GN:potD] [OR:Escherichia coli] [SR:E.coli (strain DR112) DNA,


clone pPT104] [DB:genpept-bct2] [DE:E.coli transport protein (potA, potB,


potC and potD) genes,complete cds.] [LE:3144] [RE:4190] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10579000_c1_734
1698
5470
957
318
728
5.3e−72










Description


sp:[LN:COXX_BACSU] [AC:P24009] [GN:CTAB] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


CYTOCHROME C OXIDASE ASSEMBLY FACTOR] [SP:P24009] [DB:swissprot]


>pir:[LN:C69609] [AC:C69609:S14395] [PN:cytochrome caa3 oxidase (assembly


factor) ctaB] [GN:ctaB] [CL:heme O synthase] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e334763:g2339991] [LN:BS16823KB] [AC:Z98682] [PN:CtaB


protein] [GN:ctaB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA 23.9 kB fragment.] [SP:P24009] [LE:4441] [RE:5358]


[DI:direct] >gp:[GI:g994794] [LN:BSCTABF] [AC:X54140] [PN:cytochrome a


assembly facto] [GN:ctaB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.9.3.1] [DE:B. subtilis ctaB-F genes for cytochrome a assembly factor


andcytochrome-c oxidase (EC 1.9.3.1) subunits II, I, II, and IVB.]


[NT:putative] [SP:P24009] [LE:408] [RE:1325] [DI:direct]


>gp:[GI:e1185078:g2633859] [LN:BSUB0008] [AC:Z99111:AL009126] [PN:cytochrome


caa3 oxydase assembly factor] [GN:ctaB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791to 1603020.] [SP:P24009] [LE:163924] [RE:164841] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1063753_c2_874
1699
5471
1374
457
2070
3.3e−214










Description


sp:[LN:MURD_STAAU] [AC:O33595:O07323] [GN:MURD] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.3.2.9] [DE:ADDING ENZYME)] [SP:O33595:O07323] [DB:swissprot]


>pir:[LN:JC6560] [AC:JC6560] [PN:UDP-N-acetylmuramoylalanine--D-glutamate


ligase, :UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase] [GN:murD]


[OR:Staphylococcus aureus] [EC:6.3.2.9] [DB:pir2] >gp:[GI:g2271510]


[LN:AF009671] [AC:AF009671] [PN:UDP-N-acetylmuramoyl-L-alanine:


D-glutamate] [GN:murD] [FN:catalyzes ATP-dependent D-glutamate addition]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


UDP-N-acetylmuramoyl-L-alanine:D-glutamateligase (murD) gene, complete


cds.] [NT:MurD] [LE:1] [RE:1350] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10740628_f3_637
1700
5472
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10928_c3_958
1701
5473
1242
413
239
1.1e−17










Description


pir:[LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp:[GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN:hypothetical protein] [OR:Rhodobacter capsulatus] [DB:genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10969052_c3_935
1702
5474
1725
574
2602
1.4e−270










Description


sp:[LN:PT1_STAAU] [AC:P51183] [GN:PTSI] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.3.9] [DE:(PHOSPHOTRANSFERASE SYSTEM, ENZYME I)] [SP:P51183]


[DB:swissprot] >gp:[GI:g1070386] [LN:SAPTSHI] [AC:X93205]


[PN:phosphoenolpyruvate-protein phosphatase] [GN:ptsI] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [EC:2.7.3.9] [DE:S.aureus ptsH and ptsI genes.]


[SP:P51183] [LE:462] [RE:2180] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_10972150_c3_1037
1703
5475
2055
684
3024
0.0










Description


sp:[LN:RECG_STAAU] [AC:O50581] [GN:RECG] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.6.1.-] [DE:ATP-DEPENDENT DNA HELICASE RECG,] [SP:O50581]


[DB:swissprot] >gp:[GI:d1025491:g2826896] [LN:AB000439] [AC:AB000439]


[PN:RecG] [GN:recG] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:RN4220) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus recG gene,


complete cds.] [LE:319] [RE:2379] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1173177_f3_667
1704
5476
1053
350
691
4.4e−68










Description


sp:[LN:YAAF_ECOLI] [AC:P22564] [GN:YAAF] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 32.6 KD PROTEIN IN LYTB-DAPB INTERGENIC REGION] [SP:P22564]


[DB:swissprot] >pir:[LN:JE0404] [AC:JE0404:S40553:F64723:S22291]


[PN:probable glycosidase, yaaF] [GN:yaaF] [CL:yaaF protein] [OR:Escherichia


coli] [EC:3.2.-.-] [DB:pir2] >gp:[GI:g41934] [LN:ECLSPDAP] [AC:X54945]


[GN:ORF 3] [OR:Escherichia coli] [DB:genpept-bct1] [DE:E. coli lsp-dapB


interval.] [NT:product appears to be membrane bound] [SP:P22564] [LE:1613]


[RE:2527] [DI:direct] >gp:[GI:d1001780:g216457] [LN:ECO110K]


[AC:D10483:J01597:J01683:J01706:K01298:K01990:M10420:M10611:M12544]


[OR:Escherichia coli] [SR:Escherichia coli (strain:K-12) DNA]


[DB:genpept-bct1] [DE:E.coli K12 genome, 0–2.4 min. region.] [NT:hypothetical


32.6K protein(PIR:JE0404)] [LE:26947] [RE:27861] [DI:direct]


>gp:[GI:g1786213] [LN:AE000113] [AC:AE000113:U00096] [PN:orf, hypothetical


protein] [GN:yaaF] [FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 3 of 400 of the completegenome.]


[NT:o304; 100 pct identical to YAAF_ECOLI SW: P22564] [LE:6634] [RE:7548]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1178828_c2_810
1705
5477
705
234
649
1.3e−63










Description


gp:[GI:g4097530] [LN:LLU64311] [AC:U64311]


[PN:phosphoribosylaminoimidazolesuccinocarboxamide] [GN:purC]


[OR:Lactococcus lactis] [DB:genpept-bct2] [EC:6.3.2.6] [DE:Lactococcus


lactis phosphoribosylaminoimidazolesuccinocarboxamidesynthetase (purC),


phosphoribosylformylglycinamidine synthetase I (purQ),


phosphoribosylformylglycinamidine synthetase II (purL),


andphosphoribosylpyrophosphate amidotransferase (purF) genes, completecds;


and unknown gene.] [NT:SAICAR synthetase] [LE:792] [RE:1502] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1179542_c2_839
1706
5478
222
73










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_11806512_f3_562
1707
5479
207
68
86
0.0050










Description


gp:[GI:e1344613:g3874900] [LN:CEC41G6] [AC:Z81047] [GN:C41G6.8]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid C41G6, complete sequence.] [LE:18951:19702:20184]


[RE:19549:20043:20463] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1204567_c2_897
1708
5480
750
249
481
8.0e−46










Description


pir:[LN:G69878] [AC:G69878] [PN:conserved hypothetical protein yloO]


[GN:yloO] [CL:conserved hypothetical protein yloO:conserved hypothetical


protein yloO homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185167:g2633948] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:yloO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21): from 1598421to 1807200.] [NT:similar to


hypothetical proteins] [LE:51363] [RE:52127] [DI:direct]


>gp:[GI:e323505:g2337805] [LN:BSY13937] [AC:Y13937] [PN:putative Ptc1


protein] [GN:yloO] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA from the spoVM region.] [LE:13135]


[RE:13899] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1209638_c1_775
1709
5481
540
179
642
6.9e−63










Description


sp:[LN:LSPA_STAAU] [AC:P31024] [GN:LSPA:LSP] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.4.23.36] [DE:PEPTIDASE) (SIGNAL PEPTIDASE II) (SPASE II)] [SP:P31024]


[DB:swissprot] >pir:[LN:S20433] [AC:S20433] [PN:lipoprotein signal


peptidase,] [CL:lipoprotein signal peptidase] [OR:Staphylococcus aureus]


[EC:3.4.23.36] [DB:pir2] >gp:[GI:g153045] [LN:STALSP] [AC:M83994:M84707]


[PN:prolipoprotein signal peptidase] [GN:lsp] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


prolipoprotein signal peptidase (lsp) gene,complete cds.] [LE:1213]


[RE:1704] [DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1209682_c2_856
1710
5482
2409
802
1984
4.3e−205










Description


sp:[LN:SYFB_BACSU] [AC:P17922:P94540] [GN:PHET] [OR:BACILLUS SUBTILIS]


[EC:6.1.1.20] [DE:TRNA LIGASE BETA CHAIN) (PHERS)] [SP:P17922:P94540]


[DB:swissprot] >pir:[LN:YFBSB] [AC:A69676:140460:S11731]


[PN:phenylalanine--tRNA ligase, beta chain:phenylalanyl-tRNA synthetase beta


chain] [GN:pheT] [CL:phenylalanine--tRNA ligase beta chain] [OR:Bacillus


subtilis] [EC:6.1.1.20] [DB:pir1] >gp:[GI:e1184112:g2635328] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:phenylalanyl-tRNA synthetase (beta subunit)]


[GN:pheT] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.20]


[DE:Bacillus subtilis complete genome (section 15 of 21):from 2795131 to


3013540.] [SP:P17922] [LE:130980] [RE:133394] [DI:complement]


>gp:[GI:e1165325:g1770031] [LN:BSZ75208] [AC:Z75208] [PN:phenylalanyl-tRNA


synthetase beta subunit] [GN:pheT] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:6.1.1.20] [DE:B. subtilis genomic sequence 89009bp.]


[NT:phenylalanyl-tRNA synthetase beta subunit] [SP:P17922] [LE:36513]


[RE:38927] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13720312_c3_1024
1711
5483
240
79
117
3.0e−07










Description


pir:[LN:C69878] [AC:C69878] [PN:hypothetical protein yloH] [GN:yloH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185160:g2633941] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [LE:43546] [RE:43749] [DI:direct]


>gp:[GI:e323522:g2337798] [LN:BSY13937] [AC:Y13937] [PN:putative rpoZ


protein] [GN:yloH] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA from the spoVM region.] [LE:5318]


[RE:5521] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13757785_f3_639
1712
5484
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_1376317_c2_881
1713
5485
564
187
481
8.0e−46










Description


gp:[GI:e199384:g1514599] [LN:LPPYRBSOP] [AC:Z54240] [GN:pyrR] [FN:regulatory


protein] [OR:Lactobacillus plantarum] [DB:genpept-bct1] [DE:L. plantarum


pyrimidine biosynthetic operon (pyrR, pyrB, pyrC, pyrAA, pyrAB, pyrD, pyrF,


and pyrE) genes.] [LE:781] [RE:1323] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13797076_c3_915
1714
5486
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13864213_f3_624
1715
5487
234
77
186
1.4e−14










Description


pir:[LN:D69871] [AC:D69871] [PN:hypothetical protein ykzG] [GN:ykzG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185044:g2633825] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykzG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:129406] [RE:129615] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13869091_f2_433
1716
5488
294
97
246
6.4e−21










Description


sp:[LN:QOX4_BACSU] [AC:P34959] [GN:QOXD:IPA-40D] [OR:BACILLUS SUBTILIS]


[EC:1.9.3.—] [DE:SUBUNIT QOXD)] [SP:P34959] [DB:swissprot] >pir:[LN:D38129]


[AC:D38129:S39695:H69687] [PN:quinol oxidase aa3-600 chain IV


qoxD:cytochrome aa3 quinol oxidase (subunit IV) qoxD] [GN:qoxD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143399] [LN:BACQOXA] [AC:M86548]


[PN:quinol oxidase] [GN:QOXD] [OR:Bacillus subtilis] [SR:Bacillus subtilis


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis AA3-600 quinol oxidase (QOXA,


QOXB, QOXC, QOXD) genes, complete cds.] [LE:4425] [RE:4799] [DI:direct]


>gp:[GI:g413964] [LN:BSGENR] [AC:X73124] [GN:ipa-40d qoxD] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).]


[SP:P34959] [LE:42877] [RE:43251] [DI:direct] >gp:[GI:e1186313:g2636349]


[LN:BSUB0020] [AC:Z99123:AL009126] [PN:cytochrome aa3 quinol oxidase


(subunit IV)] [GN:qoxD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 20 of 21):from 3798401 to


4010550.] [NT:alternate gene name:ipa-40d] [SP:P34959] [LE:114711]


[RE:115085] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_13916017_c1_738
1717
5489
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14460882_c2_840
1718
5490
240
79
321
7.2e−29










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14557882_f3_532
1719
5491
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14642135_c3_957
1720
5492
1905
634
2456
4.1e−255










Description


sp:[LN:TYPA_BACSU] [AC:O07631] [GN:TYPA] [OR:BACILLUS SUBTILIS]


[DE:GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG] [SP:O07631] [DB:swissprot]


>pir:[LN:E69872] [AC:E69872] [PN:GTP-binding elongation factor homolog


ylaG] [GN:ylaG] [CL:translation elongation factor Tu homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185067:g2633848] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylaG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [NT:similar to GTP-binding elongation factor]


[SP:O07631] [LE:150736] [RE:152574] [DI:direct] >gp:[GI:e1191893:g2224766]


[LN:BSZ97025] [AC:Z97025] [GN:ylaG] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis nprE, yla[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] and


pycA genes.] [NT:product highly similar to elongation factor EF-G]


[SP:O07631] [LE:4995] [RE:6833] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14644066_c2_865
1721
5493
189
62
79
0.0032










Description


gp:[GI:g3212079] [LN:AF068633] [AC:AF068633] [PN:phenol soluble modulin beta


1] [FN:inflammatory protein] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis phenol soluble modulin beta


1 and phenol soluble modulin beta 2 genes, complete cds.] [NT:PSM beta 1]


[LE:669] [RE:803] [DI:direct] >gp:[GI:g3212080] [LN:AF068633] [AC:AF068633]


[PN:phenol soluble modulin beta 2] [FN:inflammatory protein]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis phenol soluble modulin beta 1 and phenol soluble modulin beta 2


genes, complete cds.] [NT:PSM beta 2] [LE:859] [RE:993] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14650302_c1_688
1722
5494
264
87
179
8.0e−14










Description


sp:[LN:YEXA_BACSU] [AC:P12049] [GN:YEXA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 9.7 KD PROTEIN IN PURC-PURL INTERGENIC REGION] [SP:P12049]


[DB:swissprot] >pir:[LN:E29326] [AC:E29326:E69799] [PN:conserved


hypothetical protein yexA:hypothetical protein (pur operon)] [GN:yexA]


[CL:conserved hypothetical protein MJ1593] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182626:g2632960] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yexA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21):from 600701 to 813890.] [NT:similar to


hypothetical proteins] [LE:101124] [RE:101378] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14664012_f2_323
1723
5495
468
155
341
5.4e−31










Description


pir:[LN:E69875] [AC:E69875] [PN:hypothetical protein ylbP] [GN:ylbP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334785:g2340013] [LN:BS16823KB]


[AC:Z98682] [PN:YlbP protein] [GN:ylbP] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB fragment.]


[LE:21896] [RE:22378] [DI:complement] >gp:[GI:e1185100:g2633881]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbP] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [LE:181379] [RE:181861] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14851587_c3_1010
1724
5496
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_14875002_f2_408
1725
5497
141
46
85
0.0044










Description


gp:[GI:g488889] [LN:A12521] [AC:A12521] [PN:Acidic Basic Repeat Antigen


Rhoptry (ABRA)] [OR:Plasmodium falciparum] [SR:malaria parasite P.


falciparum] [DB:genpept-pat] [DE:Ag189 clone.] [LE:1:61] [RE:45:963]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_156502_f1_179
1726
5498
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_16593800_f2_359
1727
5499
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19537562_f2_429
1728
5500
198
65





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19537878_f1_177
1729
5501
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19556326_f1_94
1730
5502
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19557752_c1_777
1731
5503
912
303
844
2.7e−84










Description


sp:[LN:PYRB_BACSU] [AC:P05654] [GN:PYRB] [OR:BACILLUS SUBTILIS] [EC:2.1.3.2]


[DE:TRANSCARBAMYLASE) (ATCASE)] [SP:P05654] [DB:swissprot] >pir:[LN:OWBSAC]


[AC:A25015:C39845:B69686] [PN:aspartate carbamoyltransferase, catalytic


chain:aspartate transcarbamoylase] [GN:pyrB] [CL:ornithine


carbamoyltransferase:aspartate/ornithine carbamoyltransferase homology]


[OR:Bacillus subtilis] [EC:2.1.3.2] [DB:pir1] [MP:37 min] >gp:[GI:g143384]


[LN:BACPYRB] [AC:M13128] [OR:Bacillus subtilis] [SR:B. subtilis (strain


JH861) DNA, clone pLS201] [DB:genpept-bct1] [DE:B. subtilis pyrB gene


encoding aspartate transcarbamoylase, complete cds.] [NT:aspartate


transcarbamoylase (EC 2.1.3.2)] [LE:96] [RE:1010] [DI:direct]


>gp:[GI:e1185141:g2633922] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:aspartate


carbamoyltransferase] [GN:pyrB] [FN:pyrimidine biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.1.3.2] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [SP:P05654] [LE:21455]


[RE:22369] [DI:direct] >gp:[GI:g143387] [LN:BACPYROP] [AC:M59757]


[PN:aspartate transcarbamylase] [GN:pyrB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis ORF1A (pyrR), putative


membrane-bound uracilpermease (pyrP), aspartate transcarbamylase (pyrB),


dihydroorotase (pyrC), glutaminase of carbamyl phosphate synthetase


(pyrAA), carbamyl phosphate synthetase (pyrAB), dihydroorotase


dehydrogenase (pyrD), OMP decarboxylase (pyrF), and OMP-PRPP transferase


(pyrE) genes, complete cds; and unknown gene.] [LE:2859] [RE:3773]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19565627_c2_879
1732
5504
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19609530_f1_155
1733
5505
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19804703_c2_811
1734
5506
747
248
696
1.3e−68










Description


sp:[LN:PURQ_BACSU] [AC:P12041] [GN:PURQ] [OR:BACILLUS SUBTILIS] [EC:6.3.5.3]


[DE:SYNTHASE I)] [SP:P12041] [DB:swissprot] >pir:[LN:SYBS1G]


[AC:F29326:H69684] [PN:phosphoribosylformylglycinamidine synthase,


component I] [GN:purQ] [CL:phosphoribosylformylglycinamidine synthase


component I] [OR:Bacillus subtilis] [EC:6.3.5.3] [DB:pir1] [MP:18 min]


>gp:[GI:g143368] [LN:BACPURF] [AC:J02732:K00047] [OR:Bacillus subtilis]


[SR:B. subtilis (strain DE1 (prototroph DER. or W168)) DNA, clone pPZ]


[DB:genpept-bct1] [DE:B. subtilis pur operon encoding purine biosynthesis


enzymes, 12 genes.] [NT:phosphoribosylformyl glycinamidine synthetase I]


[LE:4393] [RE:5076] [DI:direct] >gp:[GI:e1182627:g2632961] [LN:BSUB0004]


[AC:Z99107:AL009126] [PN:phosphoribosylformylglycinamidine synthetase II]


[GN:purL] [FN:purine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:6.3.5.3] [DE:Bacillus subtilis complete genome (section 4 of 21):from


600701 to 813890.] [SP:P12041] [LE:101375] [RE:102058] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_19957802_c1_752
1735
5507
1896
631
2764
9.5e−288










Description


gp:[GI:e1333202:g3776112] [LN:SATRXA] [AC:AJ223480] [PN:excinuclease ABC,


subunit C] [GN:uvrC] [FN:excision of ultraviolet light-induced]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus trxA


and uvrC genes and partial mutS and dhsC genes.] [NT:alternative gene name:


uvrB] [LE:2972] [RE:4753] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_20312515_f2_242
1736
5508
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_20500055_f1_218
1737
5509
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_20502217_c3_990
1738
5510
1626
541
718
6.1e−71










Description


pir:[LN:G69875] [AC:G69875] [PN:hypothetical protein yllA] [GN:yllA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185102:g2633883] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:yllA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:182988] [RE:184607] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2067627_c2_849
1739
5511
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_20890875_c2_801
1740
5512
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_209840_f1_44
1741
5513
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_20994212_f1_151
1742
5514
207
68
71
0.022










Description


pir:[LN:D69872] [AC:D69872] [PN:hypothetical protein ylaF] [GN:ylaF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185066:g2633847] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylaF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:150435] [RE:150623] [DI:complement]


>gp:[GI:e324391:g2224765] [LN:BSZ97025] [AC:Z97025] [GN:ylaF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis nprE,


yla[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] and pycA genes.] [LE:4694] [RE:4882]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_211677_c3_989
1743
5515
702
233
436
4.7e−41










Description


pir:[LN:E69814] [AC:E69814] [PN:conserved hypothetical protein yfnB]


[GN:yfnB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182712:g2633046]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:yfnB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21):from 600701 to 813890.] [NT:similar to hypothetical proteins]


[LE:203465] [RE:204172] [DI:complement] >gp:[GI:e1182723:g2633057]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfnB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21):from 802821 to 1011250.] [NT:similar to hypothetical proteins]


[LE:1345] [RE:2052] [DI:complement] >gp:[GI:d1020926:g2116760] [LN:D86418]


[AC:D86418] [PN:YfnB] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA


69–70 degree region, partial sequence.] [LE:9019] [RE:9726] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_21648962_c3_930
1744
5516
1827
608
1793
7.4e−185










Description


gp:[GI:g517205] [LN:SPU09352] [AC:U09352] [PN:67 kDa Myosin-crossreactive


streptococcal] [OR:Streptococcus pyogenes] [DB:genpept-bct1]


[DE:Streptococcus pyogenes 42 KD protein (ORF1) gene and 67


KD Myosin-crossreactive streptococcal antigen gene, complete cds.] [NT:ORF2]


[LE:1734] [RE:3506] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_21656327_c1_761
1745
5517
936
311
1464
5.4e−150










Description


gp:[GI:g2149891] [LN:SAU94706] [AC:U94706] [PN:unknown] [GN:yllC]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC, yllD,


pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:987]


[RE:1922] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_21759653_f3_666
1746
5518
609
202
552
2.4e−53










Description


sp:[LN:QOX3_BACSU] [AC:P34958] [GN:QOXC:IPA-39D] [OR:BACILLUS SUBTILIS]


[EC:1.9.3.—] [DE:SUBUNIT QOXC)] [SP:P34958] [DB:swissprot] >pir:[LN:C38129]


[AC:C38129:S39694:G69687] [PN:bo-type ubiquinol oxidase, chain III


qoxC:cytochrome aa3 quinol oxidase (subunit III) qoxC] [GN:qoxC]


[CL:cytochrome-c oxidase chain III] [OR:Bacillus subtilis] [EC:1.10.3.—]


[DB:pir2] >gp:[GI:g143398] [LN:BACQOXA] [AC:M86548] [PN:quinol oxidase]


[GN:QOXC] [OR:Bacillus subtilis] [SR:Bacillus subtilis DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis AA3-600 quinol oxidase (QOXA, QOXB,


QOXC, QOXD) genes, complete cds.] [LE:3809] [RE:4423] [DI:direct]


>gp:[GI:g413963] [LN:BSGENR] [AC:X73124] [GN:ipa-39d qoxC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).]


[SP:P34958] [LE:42261] [RE:42875] [DI:direct] >gp:[GI:e1186314:g2636350]


[LN:BSUB0020] [AC:Z99123:AL009126] [PN:cytochrome aa3 quinol oxidase


(subunit III)] [GN:qoxC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 20 of 21):from 3798401 to 


4010550.] NT:alternate gene name:ipa-39d] [SP:P34958] [LE:115087]


[RE:115701] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_21915911_f1_197
1747
5519
894
297
229
4.0e−19










Description


pir:[LN:G69858] [AC:G69858] [PN:hypothetical protein ykoC] [GN:ykoC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181521:g2632041] [LN:BSAJ2571]


[AC:AJ002571] [PN:YkoC] [GN:ykoC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment between xlyA


and ykoR.] [LE:40195] [RE:40959] [DI:complement] >gp:[GI:e1183341:g2633675]


[LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykoC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7


of 21):from 1194391 to 1411140.] [LE:193144] [RE:193908] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22000943_f1_216
1748
5520
222
73





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22400283_c2_830
1749
5521
981
326
1329
1.1e−135










Description


pir:[LN:C36718] [AC:C36718:A69674] [PN:pyruvate dehydrogenase (lipoamide),


E1 beta chain precursor pdhB] [GN:pdhB] [CL:pyruvate dehydrogenase


(lipoamide) beta chain] [OR:Bacillus subtilis] [EC:1.2.4.1] [DB:pir2]


>gp:[GI:g143378] [LN:BACPYDHY] [AC:M57435:M31542] [PN:pyruvate decarboxylase


(E-1) beta subunit] [GN:pdhB] [OR:Bacillus subtilis] [SR:B. subtilis (strain


168) BRB1 (sacA321 metB5) cell line DNA, clone] [DB:genpept-bct1]


[EC:1.2.4.1] [DE:B. subtilis pyruvate dehydrogenase complex genes, complete


cds; PAL-related lipoprotein (slp) gene, complete cds, lysinedecarboxylase


(cad) gene, partial cds.] [LE:2796] [RE:3773] [DI:direct]


>gp:[GI:e1185049:g2633830] [LN:BSUB0008] [AC:Z99111:AL009126] [PN:pyruvate


dehydrogenase (E1 beta subunit)] [GN:pdhB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.2.4.1] [DE:Bacillus subtilis complete genome


(section 8 of 21):from 1394791 to 1603020.] [SP:P21882] [LE:134060]


[RE:135037] [DI:direct] >gp:[GI:g3282143] [LN:AF012285]


[AC:AF012285:AF012284:U51911] [PN:pyruvate decarboxylase E-1 beta subunit]


[GN:pdhB] [OR:Bacillus subtilis] [DB:genpept-bct2] [EC:1.2.4.1] [DE:Bacillus


subtilismobA-nprE gene region.] [NT:similar to pyruvate decarboxylase (E-1)


beta] [LE:34548] [RE:35525] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2242938_c3_1009
1750
5522
933
310
1055
1.2e−106










Description


sp:[LN:YLYB_BACSU] [AC:Q45480:O31732] [GN:YLYB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 33.7 KD PROTEIN IN LSP-PYRR INTERGENIC REGION (ORF-X)]


[SP:Q45480:O31732] [DB:swissprot] >gp:[GI:g1373157] [LN:BSU48870]


[AC:U48870] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


signal peptidase II (lsp) gene, complete cds, isoleucyl-tRNA synthetase


(ileS) and pyrR genes, partial cds.] [NT:orf-X; hypothetical protein;


Method:conceptual] [LE:1658] [RE:2569] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22461078_c1_769
1751
5523
735
244
814
4.1e−81










Description


gp:[GI:g1314301] [LN:SAU41072] [AC:U41072] [PN:unknown] [GN:ORF]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


isoleucyl-tRNA synthetase (ileS) gene, partial cds.] [LE:106] [RE:723]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22462802_c3_1026
1752
5524
1203
400
1070
3.1e−108










Description


pir:[LN:D69878] [AC:D69878] [PN:pantothenate metabolism flavoprotein


homolog yloI] [GN:yloI] [CL:pantothenate metabolism flavoprotein dfp]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185161:g2633942] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to pantothenate metabolism


flavoprotein] [LE:43830] [RE:45050] [DI:direct] >gp:[GI:e323501:g2337799]


[LN:BSY13937] [AC:Y13937] [PN:putative Dfp protein] [GN:yloI] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA


from the spoVM region.] [LE:5602] [RE:6822] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22478427_c3_987
1753
5525
138
45
115
4.8e−07










Description


sp:[LN:GGI2_STAHA] [AC:P11698] [OR:STAPHYLOCOCCUS HAEMOLYTICUS]


[DE:ANTIBACTERIAL PROTEIN 2 (GONOCOCCAL GROWTH INHIBITOR 2)] [SP:P11698]


[DB:swissprot] >pir:[LN:BXSA2] [AC:S00600] [PN:antibacterial protein


2:gonococcal growth inhibitor 2] [CL:Staphylococcus haemolyticus


antibacterial protein] [OR:Staphylococcus haemolyticus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22542567_c2_855
1754
5526
759
252
562
2.1e−54










Description


pir:[LN:G69984] [AC:G69984] [PN:rRNA methylase homolog ysgA] [GN:ysgA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184114:g2635330] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ysgA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to rRNA methylase] [LE:134799]


[RE:135545] [DI:complement] >gp:[GI:e1165323:g1770029] [LN:BSZ75208]


[AC:Z75208] [PN:hypothetical protein] [GN:ysgA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic sequence 89009bp.] [NT:Homology to


spoU-type rRNA methyltransferases;] [LE:34362] [RE:35108] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22775126_f2_411
1755
5527
633
210
263
1.0e−22










Description


pir:[LN:A69859] [AC:A69859] [PN:hypothetical protein ykoE] [GN:ykoE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181523:g2632043] [LN:BSAJ2571]


[AC:AJ002571] [PN:YkoE] [GN:ykoE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment between xlyA


and ykoR.] [LE:42565] [RE:43164] [DI:complement] >gp:[GI:e1183343:g2633677]


[LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykoE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7


of 21):from 1194391 to 1411140.] [LE:195514] [RE:196113] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_22931642_c2_802
1756
5528
1224
407
1250
2.6e−127










Description


gp:[GI:d1024918:g2696796] [LN:AB009635] [AC:AB009635] [PN:Fmt] [GN:fmt]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:KSA8) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus DNA for Fmt, complete cds.]


[LE:1234] [RE:2427] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23438887_c1_748
1757
5529
300
99
196
1.3e−15










Description


pir:[LN:A69985] [AC:A69985] [PN:hypothetical protein yshA] [GN:yshA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184110:g2635326] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:yshA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:129612] [RE:129869] [DI:complement]


>gp:[GI:e1165327:g1770033] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:yshA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:40038]


[RE:40295] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23442177_f3_600
1758
5530
669
222
429
2.6e−40










Description


pir:[LN:D69864] [AC:D69864] [PN:hypothetical protein yktB] [GN:yktB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185055:g2633836] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:yktB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:140850] [RE:141488] [DI:complement]


>gp:[GI:g3282149] [LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:unknown]


[GN:yktB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis mobA-nprE gene region.] [LE:41338] [RE:41976] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23448838_f1_217
1759
5531
873
290
786
3.8e−78










Description


sp:[LN:FOLD_BACSU] [AC:P54382] [GN:FOLD] [OR:BACILLUS SUBTILIS]


[EC:1.5.1.5:3.5.4.9] [DE:METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE,]


[SP:P54382] [DB:swissprot] >pir:[LN:E69626] [AC:E69626]


[PN:methylenetetrahydrofolate dehydrogenase (NADP+), /


methenyltetrahydrofolate cyclohydrolase,] [GN:folD]


[CL:methylenetetrahydrofolate dehydrogenase (NAD+):


methylenetetrahydrofolate dehydrogenase (NAD+) homology] [OR:Bacillus


subtilis] [EC:1.5.1.5:3.5.4.9] [DB:pir2] >gp:[GI:d1013251:g1303916]


[LN:BACJHG42] [AC:D84432:D82370] [PN:YqiA] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:190351] [RE:191202] [DI:direct] >gp:[GI:e1185699:g2634865] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:methenyltetrahydrofolate cyclohydrolase] [GN:folD]


[FN:purines and amino acids biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.5.1.5:3.5.4.9] [DE:Bacillus subtilis complete genome


(section 13 of 21):from 2395261 to 2613730.] [NT:alternate gene name:yqiA;]


[SP:P54382] [LE:132419] [RE:133270] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23453767_f1_62
1760
5532
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23492327_f1_37
1761
5533
204
67
126
3.3e−08










Description


pir:[LN:S75993] [AC:S75993] [PN:hypothetical protein] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1011491:g1001353] [LN:SYCSLLLH] [AC:D64006:AB001339]


[PN:hypothetical protein] [GN:clpP] [OR:Synechocystis sp.] [SR:Synechocystis


sp. (strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 25/27, 3138604–3270709.] [NT:ORF_ID:sll0498] [LE:80076]


[RE:80528] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23532327_c2_829
1762
5534
1113
370
1432
1.3e−146










Description


sp:[LN:ODPA_BACST] [AC:P21873] [GN:PDHA] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:1.2.4.1] [DE:PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT,]


[SP:P21873] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23550313_f2_329
1763
5535
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23572178_c2_861
1764
5536
846
281
1070
3.1e−108










Description


sp:[LN:DHSB_BACSU] [AC:P08066] [GN:SDHB] [OR:BACILLUS SUBTILIS]


[EC:1.3.99.1] [DE:SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN,] [SP:P08066]


[DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23572253_c1_796
1765
5537
741
246
623
7.1e−61










Description


pir:[LN:B69693] [AC:B69693:JC4821] [PN:ribonuclease III,:RNase D:RNase O]


[GN:rncS:srb] [CL:ribonuclease III:double-stranded RNA-binding repeat


homology] [OR:Bacillus subtilis] [EC:3.1.26.3] [DB:pir2]


>gp:[GI:e1185184:g2633965] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:ribonuclease III] [GN:rncS] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:3.1.26.3] [DE:Bacillus subtilis complete genome (section 9 of 21):from


1598421 to 1807200.] [NT:alternate gene name:rnc] [LE:66689] [RE:67438]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23632962_c2_880
1766
5538
810
269
270
1.8e−23










Description


sp:[LN:YFIE_BACSU] [AC:P54721] [GN:YFIE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.5 KD PROTEIN IN GLVBC 3′REGION] [SP:P54721]


[DB:swissprot] >pir:[LN:H69802] [AC:H69802] [PN:conserved hypothetical


protein yfiE] [GN:yfiE] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182814:g2633148] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfiE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21):from 802821 to 1011250.] [NT:similar to 


hypothetical proteins from B. subtilis] [SP:P54721] [LE:94696] [RE:95553]


[DI:direct] >gp:[GI:d1009744:g1486247] [LN:D50543] [AC:D50543] [PN:unknown]


[GN:yfiE] [FN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168, haplotype:haploid) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA for 76-degree region, complete cds.] [LE:8372] [RE:9229] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23642217_c1_790
1767
5539
648
215
396
8.1e−37










Description


pir:[LN:C69879] [AC:C69879] [PN:hypothetical protein yloS] [GN:yloS]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185171:g2633952] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [LE:55709] [RE:56353] [DI:direct]


>gp:[GI:e323508:g2337809] [LN:BSY13937] [AC:Y13937] [PN:YloS protein]


[GN:yloS] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA from the spoVM region.] [LE:17481] [RE:18125]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23647178_c2_903
1768
5540
633
210
398
5.0e−37










Description


pir:[LN:A69880] [AC:A69880] [PN:hypothetical protein ylpC] [GN:ylpC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185179:g2633960] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:ylpC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [LE:62946] [RE:63512] [DI:direct]


>gp:[GI:e323513:g2337817] [LN:BSY13937] [AC:Y13937] [PN:YlpC protein]


[GN:ylpC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA from the spoVM region.] [LE:24718] [RE:25284]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23650293_c1_785
1769
5541
627
208
693
2.7e−68










Description


pir:[LN:B69878] [AC:B69878] [PN:guanylate kinase homolog yloD] [GN:yloD]


[CL:guanylate kinase:guanylate kinase homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185159:g2633940] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:yloD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to guanylate kinase] [LE:42808] [RE:43542] [DI:direct]


>gp:[GI:e323500:g2337797] [LN:BSY13937] [AC:Y13937] [PN:putative Gmk


protein] [GN:yloD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA from the spoVM region.] [LE:4580]


[RE:5314] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23695900_c2_812
1770
5542
1551
516
1490
9.5e−153










Description


gp:[GI:g4097534] [LN:LLU64311] [AC:U64311] [PN:phosphoribosylpyrophosphate


amidotransferase] [GN:purF] [OR:Lactococcus lactis] [DB:genpept-bct2]


[EC:2.4.2.14] [DE:Lactococcus lactis


phosphoribosylaminoimidazolesuccinocarboxamidesynthetase (purC),


phosphoribosylformylglycinamidine synthetase I (purQ),


phosphoribosylformylglycinamidine synthetase II (purL),


and phosphoribosylpyrophosphate amidotransferase (purF) genes, complete cds;


and unknown gene.] [NT:PRPP ATase] [LE:4921] [RE:6441] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23730340_c1_716
1771
5543
1422
473
2270
2.1e−235










Description


pir:[LN:S19723] [AC:519723] [PN:dihydrolipoamide dehydrogenase,:pyruvate


dehydrogenase complex chain E3] [GN:pdhD] [CL:dihydrolipoamide


dehydrogenase dihydrolipoamide dehydrogenase homology] [OR:Staphylococcus


aureus] [EC:1.8.1.4] [DB:pir1] >gp:[GI:g48874] [LN:SAPDHDNA]


[AC:X58434:S73625] [PN:dihydrolipoamide dehydrogenase:subunit E3] [GN:pdhD]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [EC:1.8.1.4] [DE:S. aureus pdhB,


pdhC and pdhD genes for pyruvate decarboxylase, dihydrolipoamide


acetyltransferase and dihydrolipoamidedehydrogenase.] [LE:1853] [RE:3259]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23836036_c2_887
1772
5544
192
63
153
1.2e−09










Description


sp:[LN:CARB_BACCL] [AC:P46537] [GN:PYRAB] [OR:BACILLUS CALDOLYTICUS]


[EC:6.3.5.5] [DE:(EC 6.3.5.5) (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA


CHAIN)] [SP:P46537] [DB:swissprot] >pir:[LN:I40169] [AC:I40169:S34321]


[PN:carbamoyl-phosphate synthase (glutamine-hydrolyzing),] [GN:pyrAb]


[CL:carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain:biotin


carboxylase homology:carbamoyl-phosphate synthase (glutamine-hydrolyzing)


large chain homology] [OR:Bacillus caldolyticus] [EC:6.3.5.5] [DB:pir2]


>gp:[GI:g312443] [LN:BCPYR] [AC:X73308] [PN:carbamoyl-phosphate synthase]


[GN:PyrAb] [OR:Bacillus caldolyticus] [DB:genpept-bct1] [EC:6.3.5.5]


[DE:B. caldolyticus pyrimidine biosynthesis genes.] [SP:P46537] [LE:3658]


[RE:6855] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_23928937_c3_953
1773
5545
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24025253_f1_219
1774
5546
321
106
198
1.3e−14










Description


pir:[LN:T00323] [AC:T00323] [PN:chitinase, B] [OR:Clostridium


paraputrificum] [EC:3.2.1.14] [DB:pir3] >gp:[GI:d1024701:g2696017]


[LN:AB001874] [AC:AB001874] [PN:chitinase B] [GN:chiB] [OR:Clostridium


paraputrificum] [SR:Clostridium paraputrificum (strain:M21) DNA]


[DB:genpept-bct1] [EC:3.2.1.14] [DE:Clostridium paraputrificum gene for


chitinase B, complete cds.] [LE:1] [RE:2496] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24025467_c2_863
1775
5547
522
173
238
4.5e−20










Description


sp:[LN:YSNB_BACSU] [AC:P94559] [GN:YSNB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 19.2 KD PROTEIN IN RPH-ILVB INTERGENIC REGION] [SP:P94559]


[DB:swissprot] >pir:[LN:D69986] [AC:D69986] [PN:conserved hypothetical


protein ysnB] [GN:ysnB] [CL:conserved hypothetical protein MG207:


phosphoesterase core homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184084:g2635300] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:ysnB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21):from 2795131 to 3013540.] [NT:similar to 


hypothetical proteins] [SP:P94559] [LE:103990] [RE:104505] [DI:complement]


>gp:[GI:e1165358:g1770061] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:ysnB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:homology to HI0260 of Haemophilus


influenzae;] [SP:P94559] [LE:65402] [RE:65917] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24220002_f1_67
1776
5548
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24240676_f3_477
1777
5549
246
81





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24256551_c3_923
1780
5552
1071
356
938
3.0e−94










Description


gp:[GI:d1023423:g2463562] [LN:AB007500] [AC:AB007500:D28879] [PN:MRAY]


[GN:mraY] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:NCTC8325) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus genes for


penicillin-binding protein 1, MraY, MurD, partial and complete cds.]


[LE:3120] [RE:4085] [DI:direct] >gp:[GI:g4104230] [LN:AF034153]


[AC:AF034153] [PN:phospho-N-acetylmuramoyl-pentapeptide] [GN:mraY]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


phospho-N-acetylmuramoyl-pentapeptidetranslocase (mraY) gene, complete cds.]


[LE:28] [RE:993] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24256250_f3_467
1779
5551
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24256551_c3_923
1780
5552
1071
356
938
3.0e−94










Description


sp:[LN:PUR5_BACSU] [AC:P12043] [GN:PURM:ATH] [OR:BACILLUS SUBTILIS]


[EC:6.3.3.1] [DE:(PHOSPHORIBOSYL-AMINOIMIDAZOLE SYNTHETASE) (AIR SYNTHASE)]


[SP:P12043] DB:swissprot] >pir:[LN:AJBSCL] [AC:H29326:A69685]


[PN:phosphoribosylformylglycinamidine


cyclo-ligase,:phosphoribosylaminoimidazole synthetase] [GN:purM]


[CL:phosphoribosylformylglycinamidine cyclo-ligase:


phosphoribosylformylglycinamidine cyclo-ligase homology] [OR:Bacillus


subtilis] [EC:6.3.3.1] [DB:pir1] [MP:18 min] >gp:[GI:g143371] [LN:BACPURF]


[AC:J02732:K00047] [OR:Bacillus subtilis] [SR:B. subtilis (strain DE1


(prototroph DER. or W168)) DNA, clone pPZ] [DB:genpept-bct1] [DE:B. subtilis


pur operon encoding purine biosynthesis enzymes, 12 genes.]


[NT:phosphoribosyl aminoimidazole synthetase (PUR-M)] [LE:8796] [RE:9836]


[DI:direct] >gp:[GI:e1182630:g2632964] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:phosphoribosylaminoimidazole synthetase] [GN:purM] [FN:purine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.3.1]


[DE:Bacillus subtilis complete genome (section 4 of 21):from 600701


to 813890.] [SP:P12043] [LE:105778] [RE:106818] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24257877_c2_854
1781
5553
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24261068_c1_758
1782
5554
147
48
215
1.2e−17










Description


gp:[GI:g3212079] [LN:AF068633] [AC:AF068633] [PN:phenol soluble modulin beta


1] [FN:inflammatory protein] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis phenol soluble modulin beta


1 and phenolsoluble modulin beta 2 genes, complete cds.] [NT:PSM beta 1]


[LE:669] [RE:803] [DI:direct] >gp:[GI:g3212080] [LN:AF068633] [AC:AF068633]


[PN:phenol soluble modulin beta 2] [FN:inflammatory protein]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis phenol soluble modulin beta 1 and phenol soluble modulin beta 2


genes, complete cds.] [NT:PSM beta 2] [LE:859] [RE:993] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24261068_c3_988
1783
5555
147
48
215
1.2e−17










Description


gp:[GI:g3212079] [LN:AF068633] [AC:AF068633] [PN:phenol soluble modulin beta


1] [FN:inflammatory protein] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis phenol soluble modulin beta


1 and phenol soluble modulin beta 2 genes, complete cds.] [NT:PSM beta 1]


[LE:669] [RE:803] [DI:direct] >gp:[GI:g3212080] [LN:AF068633] [AC:AF068633]


[PN:phenol soluble modulin beta 2] [FN:inflammatory protein]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis phenol soluble modulin beta 1 and phenol soluble modulin beta 2


genes, complete cds.] [NT:PSM beta 2] [LE:859] [RE:993] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24275137_f1_21
1784
5556
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24297217_c1_780
1785
5557
3114
1037
3756
0.0










Description


sp:[LN:CARB_BACCL] [AC:P46537] [GN:PYRAB] [OR:BACILLUS CALDOLYTICUS]


[EC:6.3.5.5] [DE:(EC 6.3.5.5) (CARBAMOYL-PHOSPHATE SYNTHETASE AMMONIA


CHAIN)] [SP:P46537] [DB:swissprot] >pir:[LN:I40169] [AC:I40169:S34321]


[PN:carbamoyl-phosphate synthase (glutamine-hydrolyzing),] [GN:pyrAb]


[CL:carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain:biotin


carboxylase homology:carbamoyl-phosphate synthase (glutamine-hydrolyzing)


large chain homology] [OR:Bacillus caldolyticus] [EC:6.3.5.5] [DB:pir2]


>gp:[GI:g312443] [LN:BCPYR] [AC:X73308] [PN:carbamoyl-phosphate synthase]


[GN:PyrAb] [OR:Bacillus caldolyticus] [DB:genpept-bct1] [EC:6.3.5.5]


[DE:B. caldolyticus pyrimidine biosynthesis genes.] [SP:P46537] [LE:3658]


[RE:6855] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24330337_f3_557
1786
5558
957
318
555
1.1e−53










Description


pir:[LN:H69984] [AC:H69984] [PN:conserved hypothetical protein ysgB]


[GN:ysgB ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184111:g2635327]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:ysgB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21):from 2795131 to 3013540.] [NT:similar to hypothetical proteins]


[LE:130003] [RE:130944] [DI:direct] >gp:[GI:e1165326:g1770032] [LN:BSZ75208]


[AC:Z75208] [PN:hypothetical protein] [GN:ysgB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic sequence 89009bp.] [NT:unknown


function; putative] [LE:38963] [RE:39904] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24351577_c1_677
1787
5559
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24355342_c1_799
1788
5560
1014
338
1265
6.6e−129










Description


sp:[LN:SR54_BACSU] [AC:P37105] [GN:FFH] [OR:BACILLUS SUBTILIS] [DE:SIGNAL


RECOGNITION PARTICLE PROTEIN (FIFTY-FOUR HOMOLOG)] [SP:P37105]


[DB:swissprot] >pir:[LN:B47154] [AC:B47154:H69621] [PN:signal recognition


particle chain ffh] [GN:ffh] [CL:signal recognition particle 54 K protein]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185189:g2633970] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:signal recognition particle] [GN:ffh] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [LE:73153] [RE:74493] [DI:direct]


>gp:[GI:d1022545:g2309080] [LN:D14356] [AC:D14356] [PN:Ffh] [GN:ffh]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis orf1, ffh, rpsP genes for ORF1, Ffh


and 30S ribosomal protein S16, complete cds.] [LE:711] [RE:2051] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24406291_c2_902
1789
5561
417
138
369
5.9e−34










Description


pir:[LN:D69879] [AC:D69879] [PN:alkaline-shock protein homolog yloU]


[GN:yloU] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185174:g2633955]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:yloU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to alkaline-shock protein]


[LE:57043] [RE:57405] [DI:direct] >gp:[GI:e323527:g2337812] [LN:BSY13937]


[AC:Y13937] [PN:putative Asp23 protein] [GN:yloU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM


region.] [LE:18815] [RE:19177] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24406563_c1_742
1790
5562
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24407313_f3_590
1791
5563
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24407327_c3_1017
1792
5564
612
203
621
1.2e−60










Description


sp:[LN:PYRE_BACSU] [AC:P25972] [GN:PYRE:PYRX] [OR:BACILLUS SUBTILIS]


[EC:2.4.2.10] [DE:OROTATE PHOSPHORIBOSYLTRANSFERASE, (OPRT) (OPRTASE)]


[SP:P25972] [DB:swissprot] >pir:[LN:F69686] [AC:F69686:A30492] [PN:orotate


phosphoribosyltransferase,] [GN:pyrE] [CL:orotate


phosphoribosyltransferase:orotate phosphoribosyltransferase homology]


[OR:Bacillus subtilis] [EC:2.4.2.10] [DB:pir1] >gp:[GI:e1185148:g2633929]


[LN:BSUB0009] [AC:Z99112:AL009126] [PN:orotate phosphoribosyltransferase]


[GN:pyrE] [FN:pyrimidine biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.4.2.10] [DE:Bacillus subtilis complete genome


(section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:pyrX]


[SP:P25972] [LE:30299] [RE:30949] [DI:direct] >gp:[GI:g143394] [LN:BACPYROP]


[AC:M59757] [PN:OMP-PRPP transferase] [GN:pyrE] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis ORF1A (pyrR), putative


membrane-bound uracilpermease (pyrP), aspartate transcarbamylase (pyrB),


dihydroorotase (pyrC), glutaminase of carbamyl phosphate synthetase


(pyrAA), carbamyl phosphate synthetase (pyrAB), dihydroorotase


dehydrogenase (pyrD), OMP decarboxylase (pyrF), and OMP-PRPP transferase


(pyrE) genes, complete cds; and unknown gene.] [LE:11703] [RE:12353]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24407760_c1_773
1793
5565
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24407936_c2_896
1794
5566
1122
373
1380
4.3e−141










Description


sp:[LN:YLON_BACSU] [AC:O34617] [GN:YLON] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 41.6 KD PROTEIN IN FMT-SPOVM INTERGENIC REGION] [SP:O34617]


[DB:swissprot] >pir:[LN:F69878] [AC:F69878] [PN:conserved hypothetical


protein yloN] [GN:yloN] [CL:conserved hypothetical protein HI0365]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185166:g2633947] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to hypothetical proteins] [SP:O34617]


[LE:50265] [RE:51356] [DI:direct] >gp:[GI:e323524:g2337804] [LN:BSY13937]


[AC:Y13937] [PN:YloN protein] [GN:yloN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM region.]


[SP:O34617] [LE:12037] [RE:13128] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24412812_c3_986
1795
5567
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24415885_c3_960
1796
5568
1227
408
869
6.1e−87










Description


gp:[GI:g4096797] [LN:SCU40157] [AC:U40157] [OR:Staphylococcus carnosus]


[DB genpept-bct2] [DE:Staphylococcus carnosus condensing-enzyme-like protein


(orf1) and spoVE-like protein (orf2) genes, complete cds.] [NT:orf2; unknown


function; similar to spoVE, RodA,] [LE:1676] [RE:2779] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24422077_c3_1013
1797
5569
1101
366
1196
1.4e−121










Description


sp:[LN:CARA_BACCL] [AC:P52557] [GN:PYRAA] [OR:BACILLUS CALDOLYTICUS]


[EC:6.3.5.5] [DE:(EC 6.3.5.5) (CARBAMOYL-PHOSPHATE SYNTHETASE GLUTAMINE


CHAIN)] [SP:P52557] [DB:swissprot] >pir:[LN:I40168] [AC:I40168:S34320]


[PN:carbamoyl-phosphate synthase (glutamine-hydrolyzing),] [GN:pyrAa]


[CL:carbamoyl-phosphate synthase (glutamine-hydrolyzing) small


chain:carbamoyl-phosphate synthase (glutamine-hydrolyzing) small chain


homology:trpG homology] [OR:Bacillus caldolyticus] [EC:6.3.5.5] [DB:pir2]


>gp:[GI:g312442] [LN:BCPYR] [AC:X73308] [PN:carbamoyl-phosphate synthase]


[GN:PyrAa] [OR:Bacillus caldolyticus] [DB:genpept-bct1] [EC:6.3.5.5]


[DE:B. caldolyticus pyrimidine biosynthesis genes.] [SP:P52557] [LE:2571]


[RE:3665] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24424038_c1_791
1798
5570
1692
563
1538
7.8e−158










Description


pir:[LN:E69879] [AC:E69879] [PN:conserved hypothetical protein yloV]


[GN:yloV] [CL:Mycoplasma genitalium hypothetical protein MG369]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185175:g2633956] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloV] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to hypothetical proteins] [LE:57421]


[RE:59082] [DI:direct] >gp:[GI:e323510:g2337813] [LN:BSY13937] [AC:Y13937]


[PN:YloV protein] [GN:yloV] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM region.]


[LE:19193] [RE:20854] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24475252_f2_371
1799
5571
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24484828_c2_832
1800
5572
552
183
311
8.2e−28










Description


gp:[GI:g4981179] [LN:AE001739] [AC:AE001739:AE000512] [PN:conserved


hypothetical protein] [GN:TM0656] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 51 of 136 of the complete genome.]


[NT:similar to SP:P38522 GB:U00096 PID:1742120] [LE:1379] [RE:1909]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24485950_c3_951
1801
5573
537
178
91
0.015










Description


gp:[GI:g5306139] [LN:AF160864] [AC:AF160864] [PN:NADH dehydrogenase subunit


2] [GN:nad2] [OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena


pyriformis] [DB:genpept] [EC:1.6.5.3] [DE:Tetrahymena pyriformis


mitochondrial DNA, complete genome.] [LE:10108] [RE:10644] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24609637_c3_1001
1802
5574
798
265
916
6.4e−92










Description


gp:[GI:g4009492] [LN:AF068904] [AC:AF068904] [PN:YlmD] [GN:ylmD]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus cell


division protein FtsZ (ftsZ) gene, partial cds; YlmD (ylmD), YlmE (ylmE),


YlmF (ylmF), YlmG (ylmG), and YlmH (ylmH) genes, complete cds; and cell


division protein DivIVA (divIVA) gene, partial cds.] [NT:similar to Bacillus


subtilis YlmD] [LE:437] [RE:1228] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24610885_f2_352
1803
5575
423
140





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24632827_c1_786
1804
5576
963
320
917
5.06e−92










Description


pir:[LN:A69626] [AC:A69626] [PN:methionyl-tRNA formyltransferase, fmt]


[GN:fmt] [CL:methionyl-tRNA formyltransferase:phosphoribosylglycinamide


formyltransferase homology] [OR:Bacillus subtilis] [EC:2.1.2.9] [DB:pir2]


>gp:[GI:e1185164:g2633945] [LN:BSUB0009] [AC:Z99112:AL009126]


[PN:methionyl-tRNA formyltransferase] [GN:fmt] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.1.2.9] [DE:Bacillus subtilis complete genome


(section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:yloL]


[LE:47978] [RE:48931] [DI:direct] >gp:[GI:e323503:g2337802] [LN:BSY13937]


[AC:Y13937] [PN:putative Fmt protein] [GN:yloL] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM


region.] [LE:9750] [RE:10703] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24642042_c2_853
1805
5577
561
186
255
7.1e−22










Description


pir:[LN:C69875] [AC:C69875] [PN:hypothetical protein ylbN] [GN:ylbN]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334782:g2340010] [LN:BS16823KB]


[AC:Z98682] [PN:YlbN protein] [GN:ylbN] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB fragment.]


[LE:20393] [RE:20911] [DI:direct] >gp:[GI:e1185097:g2633878] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylbN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:179876] [RE:180394] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24642817_c2_862
1806
5578
810
269
1197
1.1e−121










Description


sp:[LN:MURI_STAHA] [AC:P52974] [GN:DGA] [OR:STAPHYLOCOCCUS HAEMOLYTICUS]


[EC:5.1.1.3] [DE:GLUTAMATE RACEMASE,] [SP:P52974] [DB:swissprot]


>gp:[GI:g520574] [LN:SHU12405] [AC:U12405] [PN:glutamate racemase] [GN:dga]


[OR:Staphylococcus haemolyticus] [DB:genpept-bct1] [DE:Staphylococcus


haemolyticus Y176 glutamate racemase (dga) gene complete cds.] [LE:263]


[RE:1063] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24643836_c3_943
1807
5579
633
210
227
6.6e−19










Description


pir:[LN:D69870] [AC:D69870:A36718] [PN:conserved hypothetical protein


ykyA:hypothetical protein (aceA 5′ region)] [GN:ykyA] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185047:g2633828] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykyA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [NT:alternate gene name:ykrC; similar to 


hypothetical] [LE:131900] [RE:132517] [DI:direct] >gp:[GI:g3282141]


[LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:unknown] [GN:ykrC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


mobA-nprE gene region.] [NT:similar to Orf5 encoded by GenBank Accession]


[LE:32388] [RE:33005] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24645025_c3_1012
1808
5580
1284
427
1287
3.1e−131










Description


sp:[LN:PYRC_BACCL] [AC:P46538] [GN:PYRC] [OR:BACILLUS CALDOLYTICUS]


[EC:3.5.2.3] [DE:DIHYDROOROTASE, (DHOASE)] [SP:P46538] [DB:swissprot]


>pir:[LN:I40167] [AC:I40167:S34319] [PN:dihydroorotase,] [GN:pyrC]


[CL:Bacillus dihydroorotase:Bacillus dihydroorotase homology] [OR:Bacillus


caldolyticus] [EC:3.5.2.3] [DB:pir2] >gp:[GI:g312441] [LN:BCPYR] [AC:X73308]


[PN:dihydroorotase] [GN:PyrC] [OR:Bacillus caldolyticus] [DB:genpept-bct1]


[EC:3.5.2.3] [DE:B. caldolyticus pyrimidine biosynthesis genes.] [SP:P46538]


[LE:1285] [RE:2568] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24648412_c1_798
1809
5581
402
133
302
7.4e−27










Description


sp:[LN:YLXM_BACSU] [AC:P37104] [GN:YLXM] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 13.2 KD PROTEIN IN FFH 5′REGION] [SP:P37104] [DB:swissprot]


>pir:[LN:A47154] [AC:A47154:A69882] [PN:conserved hypothetical protein


ylxM] [GN:ylxM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185188:g2633969]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:ylxM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:similar to hypothetical proteins]


[LE:72807] [RE:73139] [DI:direct] >gp:[GI:d1023083:g2424968] [LN:D14356]


[AC:D14356] [PN:ORF1] [GN:orf1] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis orf1, ffh, rpsP


genes for ORF1, Ffh and 30S ribosomal protein S16, complete cds.] [LE:365]


[RE:697] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24652178_c2_847
1810
5582
477
158
174
2.7e−13










Description


pir:[LN:F69930] [AC:F69930] [PN:conserved hypothetical protein yozB]


[GN:yozB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185386:g2634307]


[LN:BSUB0011] [AC:Z99114:AL009126] [GN:yozB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


11 of 21):from 2000171 to 2207900.] [NT:similar to hypothetical proteins]


[LE:85155] [RE:85691] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24730340_c3_937
1811
5583
672
223
731
2.6e−72










Description


sp:[LN:YKQB_BACSU] [AC:P39760] [GN:YKQB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 24.3 KD PROTEIN IN KINC-ADEC INTERGENIC REGION (ORF4)]


[SP:P39760] [DB:swissprot] >pir:[LN:A69862] [AC:A69862:PC6016]


[PN:conserved hypothetical protein ykqB] [GN:ykqB] [CL:conserved


hypothetical protein MG323] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1007628:g520844] [LN:BACAMOKOOO] [AC:D37799] [PN:orf4] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168]


[DB:genpept-bct1] [DE:Bacillus subtilis genes for ampS, mreBH, orf1, kinC,


orf3, orf4 and orf5.] [LE:5175] [RE:5840] [DI:direct]


>gp:[GI:e1185041:g2633822] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykqB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:alternate


gene name:ylxV, yzaC; similar to] [SP:P39760] [LE:125146] [RE:125811]


[DI:direct] >gp:[GI:g3282136] [LN:AF012285] [AC:AF012285:AF012284:U51911]


[PN:unknown] [GN:ykqA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis mobA-nprE gene region.] [NT:similar to product of orf4


encoded by GenBank] [LE:25634] [RE:26299] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24801713_c3_946
1812
5584
1314
437
1906
7.9e−197










Description


sp:[LN:ODP2_STAAU] [AC:Q59821] [GN:PDHC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.3.1.12] [DE:COMPLEX, (E2)] [SP:Q59821] [DB:swissprot] >pir:[LN:S19722]


[AC:S19722] [PN:dihydrolipoamide S-acetyltransferase, chain E2]


[CL:dihydrolipoamide acetyltransferase:lipoyl/biotin-binding homology]


[OR:Staphylococcus aureus] [EC:2.3.1.12] [DB:pir2] >gp:[GI:g581570]


[LN:SAPDHDNA] [AC:X58434:S73625] [PN:dihydrolipoamide acetyltransferase:


subunit E2] [GN:pdhC] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[EC:2.3.1.12] [DE:S. aureus pdhB, pdhC and pdhD genes for pyruvate


decarboxylase, dihydrolipoamide acetyltransferase and


dihydrolipoamidedehydrogenase.] [SP:Q59821] [LE:557] [RE:1849] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24806587_c2_848
1813
5585
1056
351
399
3.9e−37










Description


pir:[LN:H69873] [AC:H69873] [PN:conserved hypothetical protein ylbC]


[GN:ylbC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334771:g2339999]


[LN:BS16823KB] [AC:Z98682] [PN:YlbC protein] [GN:ylbC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:11510] [RE:12550] [DI:direct] >gp:[GI:e1185086:g2633867]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins from


B. subtilis] [LE:170993] [RE:1720331 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_24851577_c3_971
1814
5586
564
187
405
9.0e−38










Description


pir:[LN:E69874] [AC:E69874] [PN:conserved hypothetical protein ylbH]


[GN:ylbH] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334776:g2340004]


[LN:BS16823KB] [AC:Z98682] [PN:YlbH protein] [GN:ylbH] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:14650] [RE:15144] [DI:direct] >gp:[GI:e1185091:g2633872]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins]


[LE:174133] [RE:174627] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25425202_c1_749
1815
5587
522
173
196
1.3e−15










Description


pir:[LN:B69985] [AC:B69985] [PN:hypothetical protein yshB] [GN:yshB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184109:g2635325] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:yshB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:129072] [RE:129605] [DI:complement]


>gp:[GI:e1165328:g1770034] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:yshB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:40302]


[RE:40835] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25475250_c3_985
1816
5588
1827
608
2503
4.3e−260










Description


pir:[LN:A27763] [AC:A27763:C69704] [PN:succinate dehydrogenase,


flavoprotein:fumarate reductase:fumaric hydrogenase:succinic dehydrogenase]


[GN:sdhA:sdhB] [CL:fumarate reductase flavoprotein:3-oxosteroid


1-dehydrogenase homology:fumarate reductase flavoprotein homology]


[OR:Bacillus subtilis] [EC:1.3.99.1] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25509640_f1_185
1817
5589
240
79
75
0.0084










Description


sp:[LN:YRUB_CLOPA] [AC:P23171] [OR:CLOSTRIDIUM PASTEURIANUM] [DE:(ORF B)]


[SP:P23171] [DB:swissprot] >pir:[LN:S29118] [AC:S29118] [PN:hypothetical


protein 2] [OR:Clostridium pasteurianum] [DB:pir2] >gp:[GI:g144907]


[LN:CLORUB] [AC:M60116] [OR:Clostridium pasteurianum] [SR:C. pasteurianum


(strain ATCC 6013) DNA] [DB:genpept-bct1] [DE:C. pasteurianum open reading


frame A, B, C, and rubredoxin gene, complete cds.] [NT:open reading frame B]


[LE:1126] [RE:1353] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25604677_c1_736
1818
5590
450
149
322
5.6e−29










Description


pir:[LN:C69874] [AC:C69874] [PN:conserved hypothetical protein ylbF]


[GN:ylbF] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334774:g2340002]


[LN:BS16823KB] [AC:Z98682] [PN:YlbF protein] [GN:ylbF] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:13551] [RE:14000] [DI:direct] >gp:[GI:e1185089:g2633870]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins]


[LE:173034] [RE:173483] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25635962_c3_1008
1819
5591
486
161
274
6.9e−24










Description


gp:[GI:e244971:g1340128] [LN:SA1234] [AC:X97985] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus orfs 1,2,3 & 4.] [NT:ORF1] [LE:537] [RE:1304]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25816552_c3_1004
1820
5592
777
258
984
4.0e−99










Description


gp:[GI:g4009496] [LN:AF068904] [AC:AF068904] [PN:YlmH] [GN:ylmH]


[OR:Staphylococcus aureus] [DB genpept-bct2] [DE Staphylococcus aureus cell


division protein FtsZ (ftsZ) gene, partial cds; YlmD (ylmD), YlmE (ylmE),


YlmF (ylmF), YlmG (ylmG), and YlmH (ylmH) genes, complete cds; and cell


division protein DivIVA (divIVA) gene, partial cds.] [NT:similar to Bacillus


subtilis YlmH] [LE:2865] [RE:3671] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25818811_c2_841
1821
5593
153
50
162
5.1e−12










Description


gp:[GI:g1022725] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp:[GI:g295162] [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) gene and unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25939030_f2_399
1822
5594
183
60





Description


NO-HIT


ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25972207_f1_6
1823
5595
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_25976401_f3_533
1824
5596
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26354550_c1_740
1825
5597
192
63





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26423305_c1_767
1826
5598
336
111
386
9.3e−36










Description


gp:[GI:g4009495] [LN:AF068904] [AC:AF068904] [PN:YlmG] [GN:ylmG]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus cell


division protein FtsZ (ftsZ) gene, partial cds; YlmD (ylmD), YlmE (ylmE),


YlmF (ylmF), YlmG (ylmG), and YlmH (ylmH) genes, complete cds; and cell


division protein DivIVA (divIVA) gene, partial cds.] [NT:similar to Bacillus


subtilis YlmG] [LE:2492] [RE:2782] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26597077_c2_875
1827
5599
1398
465
1113
8.5e−113










Description


gp:[GI:g2149896] [LN:SAU94706] [AC:U94706] [PN:cell division protein]


[GN:div1B] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC,


yllD, pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:7179]


[RE:8498] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26598402_c3_1011
1828
5600
1314
437
1251
2.0e−127










Description


sp:[LN:PYRP_BACCL] [AC:P41006] [GN:PYRP] [OR:BACILLUS CALDOLYTICUS]


[DE:URACIL PERMEASE (URACIL TRANSPORTER)] [SP:P41006] [DB:swissprot]


>pir:[LN:S38893] [AC:S38893] [PN:uracil transport protein:uracil permease]


[CL:uracil transport protein uraA] [OR:Bacillus caldolyticus] [DB:pir2]


>gp:[GI:g431231] [LN:BCPYRQP] [AC:X76083] [PN:uracil permease] [GN:pyrP]


[OR:Bacillus caldolyticus] [DB:genpept-bct1] [DE:B. caldolyticus (DSM405)


pyrR, pyrP and pyrB (partial) genes.] [SP:P41006] [LE:1490] [RE:2788]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26614167_c1_795
1829
5601
240
79
238
4.5e−20










Description


sp:[LN:ACP_BACSU] [AC:P80643:P51832] [GN:ACPA:ACPP] [OR:BACILLUS SUBTILIS]


[DE:ACYL CARRIER PROTEIN (ACP)] [SP:P80643:P51832] [DB:swissprot]


>pir:[LN:JC4822] [AC:JC4822:A69582 ] [PN:acyl carrier protein:8.5 K protein]


[GN:acpA:srb] [CL:acyl carrier protein:acyl carrier protein homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185183:g2633964] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:acyl carrier protein] [GN:acpA] [FN:fatty acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate


gene name:acpP] [SP:P80643] [LE:66316] [RE:66549] [DI:direct]


>gp:[GI:d1011632:g1237013] [LN:D64116] [AC:D64116] [PN:ORF2] [GN:orf2]


[OR:Bacillus subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genes for ORF1, ORF2, ORF3, ORF4 and Srb, partial and


complete cds.] [LE:140] [RE:373] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_26828187_f1_147
1830
5602
504
167
187
1.1e−14










Description


pir:[LN:B69873] [AC:B69873] [PN:hypothetical protein ylaL] [GN:ylaL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185072:g2633853] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylaL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:155412] [RE:155897] [DI:complement]


>gp:[GI:e324323:g2224771] [LN:BSZ97025] [AC:Z97025] [GN:ylaL] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis nprE,


yla[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] and pycA genes.] [LE:9671] [RE:10156]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2751260_f3_673
1831
5603
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2766500_c3_938
1832
5604
153
50
113
2.8e−06










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2789801_f2_436
1833
5605
366
121
163
1.2e−11










Description


pir:[LN:D70070] [AC:D70070] [PN:transcription regulator homolog ywtF]


[GN:ywtF] [CL:Bacillus subtilis probable transcription regulator yvhJ]


[OR:Bacillus subtilis ] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_2835285_f3_466
1834
5606
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_29319086_c1_739
1835
5607
519
172
467
2.4e−44










Description


pir:[LN:F69874] [AC:F69874] [PN:lipopolysaccharide core biosynthesis


homolog ylbI] [GN:ylbI] [CL:lipopolysaccharide core biosynthesis protein


kdtB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334777:g2340005]


[LN:BS16823KB] [AC:Z98682] [PN:YlbI protein] [GN:ylbI] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:15208] [RE:15693] [DI:direct] >gp:[GI:e1185092:g2633873]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to lipopolysaccharide core


biosynthesis] [LE:174691] [RE:175176] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_29320217_f2_271
1836
5608
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_29384818_c2_845
1837
5609
3465
1154
3900
0.0










Description


pir:[LN:F69685] [AC:F69685] [PN:pyruvate carboxylase pycA] [GN:pycA]


[CL:pyruvate carboxylase biotin carboxylase homology:lipoyl/biotin-binding


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185076:g2633857]


[LN:BSUB0008] [AC:Z99111:AL009126] [PN:pyruvate carboxylase] [GN:pycA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.4.1.1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:alternate


gene name:ylaP] [LE:158800] [RE:162246] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_29410908_c2_867
1838
5610
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_29488551_f2_398
1839
5611
234
77
59
0.020










Description


gp:[GI:g453389] [LN:BCU05814] [AC:U05814] [PN:cytochrome C oxidase subunit


III] [GN:COIII] [FN:electron transport] [OR:Kinetoplast Blastocrithidia


culicis] [SR:Blastocrithidia culicis] [DB:genpept-inv1] [DE:Blastocrithidia


culicis ATCC30268 kinetoplast NADH dehydrogenase subunit 7 (ND7) gene,


partial cds, and cytochrome C oxidase subunit III (COIII) gene, complete


cds.] [LE:223] [RE:1089] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_30656300_c3_1030
1840
5612
1353
450
912
1.7e−91










Description


sp:[LN:SUN_BACSU] [AC:P94464] [GN:SUN:FMU] [OR:BACILLUS SUBTILIS] [DE:SUN


PROTEIN] [SP:P94464] [DB:swissprot] >pir:[LN:E69878] [AC:E69878]


[PN:RNA-binding Sun protein homolog yloM] [GN:yloM] [CL:hypothetical


protein HI0624] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185165:g2633946]


[LN:BSUB0009] [AC:Z99112:AL009126] [GN:yloM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9


of 21):from 1598421 to 1807200.] [NT:alternate gene name:sun; similar to 


RNA-binding] [SP:P94464] [LE:48918] [RE:50261] [DI:direct]


>gp:[GI:e323504:g2337803] [LN:BSY13937] [AC:Y13937] [PN:putative Fmu


protein] [GN:yloM] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA from the spoVM region.] [SP:P94464]


[LE:10690] [RE:12033] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_30663955_c2_809
1841
5613
1152
383
767
3.9e−76










Description


sp:[LN:PURK_BACSU] [AC:P12045] [GN:PURK] [OR:BACILLUS SUBTILIS]


[EC:4.1.1.21] [DE:(AIR CARBOXYLASE) (AIRC)] [SP:P12045] [DB:swissprot]


>pir:[LN:DCBSPK] [AC:B29326:G69684] [PN:phosphoribosylaminoimidazole


carboxylase, carbon dioxide-fixation chain:phosphoribosylaminoimidazole


carboxylase chain II] [GN:purK] [CL:phosphoribosylaminoimidazole


carboxylase carbon dioxide-fixation chain:phosphoribosylaminoimidazole


carboxylase carbon dioxide-fixation chain homology] [OR:Bacillus subtilis]


[EC:4.1.1.21] [DB:pir1] [MP:18 min] >gp:[GI:g143365] [LN:BACPURF]


[AC:J02732:K00047] [OR:Bacillus subtilis] [SR:B. subtilis (strain DE1


(prototroph DER. or W168)) DNA, clone pPZ] [DB:genpept-bct1] [DE:B. subtilis


pur operon encoding purine biosynthesis enzymes, 12 genes.]


[NT:phosphoribosyl aminoimidazole carboxylase II] [LE:920] [RE:2059]


[DI:direct] >gp:[GI:e1182623:g2632957] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:phosphoribosylaminoimidazole carboxylase II] [GN:purK] [FN:purine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.1.1.21]


[DE:Bacillus subtilis complete genome (section 4 of 21):from 600701


to 813890.] [SP:P12045] [LE:97902] [RE:99041] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_30745680_f2_431
1842
5614
2007
668
2279
2.3e−236










Description


sp:[LN:QOX1_BACSU] [AC:P34956] [GN:QOXB:IPA-38D] [OR:BACILLUS SUBTILIS]


[EC:1.9.3.—] [DE:SUBUNIT QOXB) (OXIDASE AA(3) SUBUNIT 1)] [SP:P34956]


[DB:swissprot] >pir:[LN:B38129] [AC:B38129:S39693:F69687] [PN:bo-type


ubiquinol oxidase, chain I:cytochrome aa3 quinol oxidase chain I:quinol


oxidase aa3-600] [GN:qoxB] [CL:cytochrome-c oxidase chain I:cytochrome-c


oxidase chain I homology] [OR:Bacillus subtilis] [EC:1.10.3.—] [DB:pir2]


>gp:[GI:g143397] [LN:BACQOXA] [AC:M86548] [PN:quinol oxidase] [GN:QOXB]


[OR:Bacillus subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis AA3-600 quinol oxidase (QOXA, QOXB, QOXC, QOXD) genes,


complete cds.] [LE:1846] [RE:3795] [DI:direct] >gp:[GI:g413962] [LN:BSGENR]


[AC:X73124] [GN:ipa-38d qoxB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic region (325 to 333).] [SP:P34956] [LE:40298]


[RE:42247] [DI:direct] >gp:[GI:e1186315:g2636351] [LN:BSUB0020]


[AC:Z99123:AL009126] [PN:cytochrome aa3 quinol oxidase (subunit I)]


[GN:qoxB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 20 of 21):from 3798401 to 4010550.] [NT:alternate


gene name:ipa-38d] [SP:P34956] [LE:115715] [RE:117664] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_31272062_f1_183
1843
5615
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_32242890_f2_397
1844
5616
1701
566
1986
2.6e−205










Description


sp:[LN:YKQC_BACSU] [AC:Q45493] [GN:YKQC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 61.5 KD PROTEIN IN ADEC-PDHA INTERGENIC REGION] [SP:Q45493]


[DB:swissprot] >pir:[LN:B69862] [AC:B69862] [PN:conserved hypothetical


protein ykqC] [GN:ykqC] [CL:conserved hypothetical protein MG139]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185043:g2633824] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykqC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [NT:similar to hypothetical proteins] [SP:Q45493]


[LE:127733] [RE:129400] [DI:complement] >gp:[GI:g3282138] [LN:AF012285]


[AC:AF012285:AF012284:U51911] [PN:unknown] [GN:ykqC] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE


gene region.] [NT:similar to aminopeptidase AMPS with Swiss-Prot] [LE:28221]


[RE:29888] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_32667138_f1_135
1845
5617
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_32756_f3_601
1846
5618
1401
466
748
4.0e−74










Description


pir:[LN:S62667] [AC:S62667] [PN:Nramp1 protein] [CL:natural


resistance-associated macrophage protein 1] [OR:Oryza sativa] [SR:, rice]


[DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_3314128_f2_238
1847
5619
234
77





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_33153_c2_834
1848
5620
900
299
454
5.8e−43










Description


gp:GI:g4981938] [LN:AE001791] [AC:AE001791:AE000512]


[PN:spermidine/putrescine ABC transporter, permease] [GN:TM1377]


[OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga maritima section


103 of 136 of the complete genome.] [NT:similar to GB:L42023 SP:P45170


PID:1007357] [LE:8884] [RE:9672] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_33367325_c1_706
1849
5621
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_33594187_c1_728
1850
5622
303
100
150
7.1e−10










Description


gp:[GI:g2668605] [LN:AF015453] [AC:AF015453] [PN:unknown] [OR:Lactobacillus


rhamnosus] [DB:genpept-bct2] [DE:Lactobacillus rhamnosus


6-phospho-beta-glucosidase homolog gene, partial cds; GNTR transcriptional


regulator homolog and surface located protein genes, complete cds.]


[NT:3.0E-ORF-1] [LE:2236] [RE:>3603] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_33595178_f3_476
1851
5623
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_33651636_c3_981
1852
5624
1776
951
1528
9.0e−157










Description


pir:[LN:C69985] [AC:C69985] [PN:probable DNA-dependent DNA polymerase beta


chain yshC] [GN:yshC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184108:g2635324] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:yshC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21):from 2795131 to 3013540.] [NT:similar to 


DNA polymerase beta] [LE:127286] [RE:128998] [DI:complement]


>gp:[GI:e1165329:g1770035] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:yshC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:40909]


[RE:42621] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34017812_f3_480
1853
5625
1722
573
1369
6.3e−140










Description


pir:[LN:G69877] [AC:G69877] [PN:fibronectin-binding protein homolog yloA]


[GN:yloA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e332190:g2462963]


[LN:BSPYREYLO] [AC:AJ000974] [PN:putative fibronectin-binding protein]


[GN:yloA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


pyrE to yloA gene region.] [NT:protein A-like] [LE:6297] [RE:8015]


[DI:complement] >gp:[GI:e1185156:g2633937] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:yloA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:similar to fibronectin-binding protein]


[LE:37110] [RE:38828] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34100626_f3_494
1854
5626
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34175686_c1_686
1855
5627
513
170
502
4.7e−48










Description


sp:[LN:PUR6_BACSU] [AC:P12044] [GN:PURE] [OR:BACILLUS SUBTILIS]


[EC:4.1.1.21] [DE:(EC 4.1.1.21) (AIR CARBOXYLASE) (AIRC)] [SP:P12044]


[DB:swissprot] >pir:[LN:DEBSPE] [AC:A29326:D69684]


[PN:phosphoribosylaminoimidazole carboxylase, catalytic


chain:phosphoribosylaminoimidazole carboxylase chain I] [GN:purE]


[CL:phosphoribosylaminoimidazole carboxylase catalytic


chain:phosphoribosylaminoimidazole carboxylase catalytic chain homology]


[OR:Bacillus subtilis] [EC:4.1.1.21] [DB:pir1] [MP: 18 min] >gp:[GI:g143364]


[LN:BACPURF] [AC:J02732:K00047] [OR:Bacillus subtilis] [SR:B. subtilis


(strain DE1 (prototroph DER. or W168)) DNA, clone pPZ] [DB:genpept-bct1]


[DE:B. subtilis pur operon encoding purine biosynthesis enzymes, 12 genes.]


[NT:phosphoribosyl aminoimidazole carboxylase I] [LE:439] [RE:927]


[DI:direct] >gp:[GI:e1182622:g2632956] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:phosphoribosylaminoimidazole carboxylase I] [GN:purE] [FN:purine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.1.1.21]


[DE:Bacillus subtilis complete genome (section 4 of 21):from 600701


to 813890.] [SP:P12044] [LE:97421] [RE:97909] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34407750_f2_368
1856
5628
162
53
119
1.8e−07










Description


pir:[LN:G69872] [AC:G69872] [PN:hypothetical protein ylaI] [GN:ylaI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185069:g2633850] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylaI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:153004] [RE:153213] [DI:complement]


>gp:[GI:e324322:g2224768] [LN:BSZ97025] [AC:Z97025] [GN:ylaI] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis nprE,


yla[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] and pycA genes.] [LE:7263] [RE:7472]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34642213_c2_877
1857
5629
615
204
681
5.1e−67










Description


gp:[GI:g4009494] [LN:AF068904] [AC:AF068904] [PN:YlmF] [GN:ylmF]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus cell


division protein FtsZ (ftsZ) gene, partial cds; YlmD (ylmD), YlmE (ylmE),


YlmF (ylmF), YlmG (ylmG), and YlmH (ylmH) genes, complete cds; and cell


division protein DivIVA (divIVA) gene, partial cds.] [NT:similar to Bacillus


subtilis YlmF] [LE:1926] [RE:2480] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34644125_c2_876
1858
5630
1416
471
1792
9.5e−185










Description


sp:[LN:FTSA_STAAU] [AC:O07325] [GN:FTSA] [OR:STAPHYLOCOCCUS AUREUS] [DE:CELL


DIVISION PROTEIN FTSA] [SP:O07325] [DB:swissprot] >gp:[GI:g2149897]


[LN:SAU94706] [AC:U94706] [PN:cell division protein] [GN:ftsA]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC, yllD,


pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:8604]


[RE:10019] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34646937_c3_983
1859
5631
336
111
512
4.1e−49










Description


gp:[GI:e1333201:g3776111] [LN:SATRXA] [AC:AJ223480] [PN:thioredoxin]


[GN:trxA] [FN:thiol:disulfide interchange] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus trxA and uvrC genes and partial


mutS and dhsC genes.] [LE:2334] [RE:2648] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_34650452_c1_782
1860
5632
225
74
87
0.00078










Description


gp:[GI:g488925] [LN:A13473] [AC:A13473] [PN:41 kd antigen] [OR:Plasmodium


falciparum] [SR:malaria parasite P. falciparum] [DB:genpept-pat]


[DE:P. falciparum gene for 41 kd antigen, clone 41-14.] [LE:<1] [RE:>532]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_35285902_c2_859
1861
5633
150
49
46
0.042










Description


sp:[LN:PGH2_MUSVI] [AC:O62725] [GN:PTGS2:COX2] [OR:MUSTELA VISON]


[SR:,AMERICAN MINK] [EC:1.14.99.1] [DE:SYNTHASE 2) (PGH SYNTHASE 2) (PGHS-2)


(PHS II)] [SP:O62725] [DB:swissprot] >gp:[GI:g2959708] [LN:AF047841]


[AC:AF047841] [PN:prostaglandin synthase 2] [OR:Mustela vison] [SR:American


mink] [DB:genpept-mam] [DE:Mustela vison prostaglandin synthase 2 mRNA,


complete cds.] [NT:cyclooxygenase 2] [LE:11] [RE:1825] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_353427_f2_302
1862
5634
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_35365635_c2_846
1863
5635
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_35947191_c2_835
1864
5636
1155
384
149
6.3e−07










Description


gp:[GI:g1633572] [LN:KSU52064] [AC:U52064] [OR:Kaposi's sarcoma-associated


herpesvirus] [SR:Kaposi's sarcoma-associated herpesvirus - Human herpesvirus


8] [DB:genpept-vr1] [DE:Kaposi's sarcoma-associated herpes-like virus ORF73


homolog gene, complete cds.] [NT:Herpesvirus saimiri ORF73 homolog] [LE:1]


[RE:3489] [DI:direct] >gp:[GI:g1718329] [LN:KSU75698] [AC:U75698]


[OR:Kaposi's sarcoma-associated herpesvirus] [SR:Kaposi's sarcoma-associated


herpesvirus - Human herpesvirus 8] [DB:genpept-vr1] [DE:Kaposi's


sarcoma-associated herpesvirus long unique region, 80 putative ORF's and


kaposin gene, complete cds.] [NT:ORF 73; extensive acidic domains, potential


leucine] [LE:123809] [RE:127297] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_35978392_c1_788
1865
5637
2007
668
949
2.0e−95










Description


pir:[LN:H69878] [AC:H69878] [PN:protein kinase homolog yloP] [GN:yloP]


[CL:protein kinase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185168:g2633949] [LN:BSUB0009] [AC:Z99112:AL009126] [GN:yloP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:similar to 


protein kinase] [LE:52121] [RE:54067] [DI:direct] >gp:[GI:e323506:g2337806]


[LN:BSY13937] [AC:Y13937] [PN:putative Pkn2 protein] [GN:yloP] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA


from the spoVM region.] [LE:13893] [RE:15839] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_35980062_f2_357
1866
5638
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36129451_c1_702
1867
5639
288
95
408
4.3e−38










Description


sp:[LN:PTHP_STACA] [AC:P23534] [GN:PTSH] [OR:STAPHYLOCOCCUS CARNOSUS]


[DE:PHOSPHOCARRIER PROTEIN HPR (HISTIDINE-CONTAINING PROTEIN)] [SP:P23534]


[DB:swissprot] >pir:[LN:A42374] [AC:S15367:A42374] [PN:phosphotransferase


system phosphohistidine-containing protein:phosphotransferase system HPr]


[CL:phosphotransferase system phosphohistidine-containing


protein:phosphotransferase system phosphohistidine-containing protein


homology] [OR:Staphylococcus carnosus] [DB:pir1] >gp:[GI:g46908] [LN:SCPTSH]


[AC:X60766] [PN:Histidine-containing protein (HPr)] [GN:ptsH]


[OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:S. carnosus ptsH gene for


histidine-containing protein (HPr).] [SP:P23534] [LE:270] [RE:536]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36141893_c3_1039
1868
5640
1248
415
1166
2.1e−118










Description


gp:[GI:e1185186:g2633967] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:signal


recognition particle (docking protein)] [GN:ftsY] [FN:involved in secretion


of extracellular proteins] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 9 of 21):from 1598421 to 


1807200.] [NT:alternate gene name:srb] [SP:P51835] [LE:71119] [RE:72108]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36142817_c1_717
1869
5641
1149
382
925
7.1e−93










Description


pir:[LN:A70180] [AC:A70180] [PN:spermidine/putrescine ABC transporter,


ATP-binding protein (potA) homolog] [CL:ATP-binding cassette homology]


[OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2]


>gp:[GI:g2688562] [LN:AE001165] [AC:AE001165:AE000783]


[PN:spermidine/putrescine ABC transporter,] [GN:BB0642] [OR:Borrelia


burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2] [DE:Borrelia


burgdorferi (section 51 of 70) of the complete genome.] [NT:similar to 


GB:M64519 SP:P23858 PID:147326 GB:U00096] [LE:11911] [RE:12954]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36147150_c1_757
1870
5642
609
492
5.4e−47










Description


pir:[LN:C69986] [AC:C69986] [PN:conserved hypothetical protein ysnA]


[GN:ysnA] [CL:Methanococcus jannaschii conserved hypothetical protein


MJ0226] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184085:g2635301]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:ysnA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21):from 2795131 to 3013540.] [NT:similar to hypothetical proteins]


[LE:104515] [RE:105111] [DI:complement] >gp:[GI:e1165357:g1770060]


[LN:BSZ75208] [AC:Z75208] [PN:hypothetical protein] [GN:ysnA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic sequence 89009bp.]


[NT:homology to ORFo197 of Escherichia coli; unknown] [LE:64796] [RE:65392]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36219187_c3_920
1871
5643
2208
735
2062
2.3e−213










Description


sp:[LN:PURL_BACSU] [AC:P12042] [GN:PURL] [OR:BACILLUS SUBTILIS] [EC:6.3.5.3]


[DE:SYNTHASE II)] [SP:P12042] [DB:swissprot] >pir:[LN:SYBS2G]


[AC:G29326:C69685] [PN:phosphoribosylformylglycinamidine synthase,


component II:formylglycinamide ribotide amidotransferase] [GN:purL]


[CL:phosphoribosylformylglycinamidine synthase component II] [OR:Bacillus


subtilis] [EC:6.3.5.3] [DB:pir1] [MP:18 min] >gp:[GI:g143369] [LN:BACPURF]


[AC:J02732:K00047] [OR:Bacillus subtilis] [SR:B. subtilis (strain DE1


(prototroph DER. or W168)) DNA, clone pPZ] [DB:genpept-bct1] [DE:B. subtilis


pur operon encoding purine biosynthesis enzymes, 12 genes.]


[NT:phosphoribosylformyl glycinamidine synthetase II] [LE:5060] [RE:7288]


[DI:direct] >gp:[GI:e1182628:g2632962] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:phosphoribosylformylglycinamidine synthetase I] [GN:purQ] [FN:purine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.5.3]


[DE:Bacillus subtilis complete genome (section 4 of 21):from 600701


to 813890.] [SP:P12042] [LE:102042] II[RE:104270] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36445263_f2_320
1872
5644
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36520302_c2_870
1873
5645
189
62
250
2.4e−21










Description


sp:[LN:YLLB_STAAU] [AC:O07319] [GN:YLLB] [OR:STAPHYLOCOCCUS AUREUS]


[DE:HYPOTHETICAL 17.4 KD PROTEIN] [SP:O07319] [DB:swissprot]


>gp:[GI:g2149890] [LN:SAU94706] [AC:U94706] [PN:unknown] [GN:yllB]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC, yllD,


pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:537]


[RE:971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_36601687_c1_692
1874
5646
1260
419
1016
1.6e−102










Description


sp:[LN:PUR2_BACSU] [AC:P12039] [GN:PURD] [OR:BACILLUS SUBTILIS]


[EC:6.3.4.13] [DE:RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE


SYNTHETASE)] [SP:P12039] [DB:swissprot] >pir:[LN:AJBSAG] [AC:B29183:C69684]


[PN:phosphoribosylamine--glycine ligase,:phosphoribosylglycinamide


synthetase] [GN:purD] [CL:phosphoribosylamine--glycine ligase:


phosphoribosylamine--glycine ligase homology] [OR:Bacillus subtilis]


[EC:6.3.4.13] [DB:pir1] [MP:18 min] >gp:[GI:g2465561] [LN:AF011544]


[AC:AF011544] [PN:phosphoribosylglycinamide synthetase] [GN:purD]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


phosphoribosylaminoimidazole-carboxamideformyltransferase (purH-J) gene,


partial cds, phosphoribosylglycinamide synthetase (purD), YecA (yecA),


putative adenine deaminase (yecB), YecC (yecC), and YecD (yecD)


genes, complete cds, and putative glutamate synthase (yecE) gene,


partial cds.] [NT:identified by complementation of E. coli TX267,] [LE:263]


[RE:1531] [DI:direct] >gp:[GI:g143374] [LN:BACPURF] [AC:J02732:K00047]


[OR:Bacillus subtilis] [SR:B. subtilis (strain DE1 (prototroph DER. or W168))


DNA, clone pPZ] [DB:genpept-bct1] [DE:B. subtilis pur operon encoding purine


biosynthesis enzymes, 12 genes.] [NT:phosphoribosyl glycinamide synthetase


(PUR-D; gtg] [LE:11971] [RE:13239] [DI:direct] >gp:[GI:e1182633:g2632967]


[LN:BSUB0004] [AC:Z99107:AL009126] [PN:phosphoribosylglycinamide synthetase]


[GN:purD] [FN:purine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:6.3.4.13] [DE:Bacillus subtilis complete genome (section 4 of 21):from


600701 to 813890.] [SP:P12039] [LE:108953] [RE:110221] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_3912890_f3_463
1875
5647
222
73
246
6.4e−21










Description


sp:[LN:RL28_BACST] [AC:P23374] [GN:RPMB] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L28] [SP:P23374] [DB:swissprot] >pir:[LN:A48396]


[AC:A48396] [PN:ribosomal protein L28] [CL:Escherichia coli ribosomal


protein L28] [OR:Bacillus stearothermophilus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_3945257_f3_664
1876
5648
1176
391
738
4.6e−73










Description


pir:[LN:E69687] [AC:E69687:A38129:S39692] [PN:cytochrome aa3 quinol oxidase


(subunit II) qoxA:quinol oxidase aa3-600 chain qoxA] [GN:qoxA] [CL:bo-type


ubiquinol oxidase chain II precursor:cytochrome-c oxidase chain II


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186316:g2636352]


[LN:BSUB0020] [AC:Z99123:AL009126] [PN:cytochrome aa3 quinol oxidase


(subunit II)] [GN:qoxA] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 20 of 21):from 3798401 to 


4010550.] [NT:alternate gene name:ipa-37d] [LE:117692] [RE:118657]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_3960881_f3_483
1877
5649
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_39808_f3_498
1878
5650
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_3992193_f3_496
1879
5651
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4067342_c3_977
1880
5652
1086
361
1267
4.1e−129










Description


sp:[LN:SYFA_BACSU] [AC:P17921:P94539] [GN:PHES] [OR:BACILLUS SUBTILIS]


[EC:6.1.1.20] [DE:-TRNA LIGASE ALPHA CHAIN) (PHERS)] [SP:P17921:P94539]


[DB:swissprot] >pir:[LN:YFBSA] [AC:H69675:I40459:S11730]


[PN:phenylalanine--tRNA ligase, alpha chain:phenylalanyl-tRNA synthetase


alpha chain] [GN:pheS] [CL:phenylalanine--tRNA ligase alpha chain]


[OR:Bacillus subtilis] [EC:6.1.1.20] [DB:pir1] >gp:[GI:e1184113:g2635329]


[LN:BSUB0015] [AC:Z99118:AL009126] [PN:phenylalanyl-tRNA synthetase (alpha


subunit)] [GN:pheS] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.20]


[DE:Bacillus subtilis complete genome (section 15 of 21):from 2795131 to 


3013540.] [SP:P17921] [LE:133410] [RE:134444] [DI:complement]


>gp:[GI:e1165324:g1770030] [LN:BSZ75208] [AC:Z75208] [PN:phenylalany-tRNA


synthetase beta subunit] [GN:pheS] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:6.1.1.20] [DE:B. subtilis genomic sequence 89009bp.]


[NT:phenylalanyl-tRNA synthetase beta subunit] [SP:P17921] [LE:35463]


[RE:36497] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4103438_c3_970
1881
5653
255
84
110
1.6e−06










Description


pir:[LN:D69874] [AC:D69874] [PN:conserved hypothetical protein ylbG]


[GN:ylbG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334775:g2340003]


[LN:BS16823KB] [AC:Z98682] [PN:YlbG protein] [GN:ylbG] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:14055] [RE:14327] [DI:direct] >gp:[GI:e1185090:g2633871]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins]


[LE:173538] [RE:173810] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4298177_c1_776
1882
5654
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4300332_c1_700
1883
5655
1329
442
98
0.00059










Description


gp:[GI:g5306148] [LN:AF160864] [AC:AF160864] [PN:orf365] [GN:orf365]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf65 (CPGN); ATA initiation] [LE:15906] [RE:17003]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4306562_c1_760
1884
5656
306
101
469
1.5e−44










Description


sp:[LN:YLLB_STAAU] [AC:O07319] [GN:YLLB] [OR:STAPHYLOCOCCUS AUREUS]


[DE:HYPOTHETICAL 17.4 KD PROTEIN] [SP:O07319] [DB:swissprot]


>gp:GI:g2149890] [LN:SAU94706] [AC:U94706] [PN:unknown] [GN:yllB]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC, yllD,


pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:537]


[RE:971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4339053_c3_934
1885
5657
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4457788_f2_344
1886
5658
1716
571
285
5.3e−21










Description


pir:[LN:D71623] [AC:D71623] [PN:erythrocyte membrane protein PfEMP3


PFB0095c] [GN:PFB0095c] [OR:Plasmodium falciparum] [DB:pir2]


>gp:[GI:g3845093] [LN:AE001371] [AC:AE001371:AE001362] [PN:erythrocyte


membrane protein PfEMP3] [GN:PFB0095c] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv2] [DE:Plasmodium


falciparum chromosome 2, section 8 of 73 of the complete sequence.]


[NT:identified by sequence similarity] [LE:1407:8817] [RE:8621:8927]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4509661_c1_783
1887
5659
411
136
168
1.2e−12










Description


gp:[GI:e1453986:g4835313] [LN:SC5H1] [AC:AL049863] [PN:hypothetical protein]


[GN:SC5H1.10c] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 5H1.] [NT:SC5H1.10c, hypothetical


protein, len:160 aa;] [LE:8093] [RE:8575] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4532967_c3_982
1888
5660
2358
785
3159
0.0










Description


gp:[GI:e1333200:g3776110] [LN:SATRXA] [AC:AJ223480] [PN:MutS-like protein]


[GN:mutS] [FN:DNA mismatch repair protein] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus trxA and uvrC genes and partial


mutS and dhsC genes.] [LE:<1] [RE:2161] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4696068_c1_741
1889
5661
186
61
237
5.7e−20










Description


sp:[LN:RL32_BACST] [AC:P07840] [GN:RPMF] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L32 (RIBOSOMAL PROTEIN I) (BL37)] [SP:P07840]


[DB:swissprot] >pir:[LN:R5BS37] [AC:S07236] [PN:ribosomal protein


L32:ribosomal protein BL37:ribosomal protein I] [CL:Escherichia coli


ribosomal protein L32] [OR:Bacillus stearothermophilus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4725000_c1_797
1890
5662
3636
1211
2426
6.2e−252










Description


pir:[LN:G69708] [AC:G69708:JC4819:PC4029] [PN:chromosome segregation SMC


protein:minichromosome stabilizing protein SMC] [GN:smc] [CL:conserved


hypothetical P115 protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185185:g2633966] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:chromosome


segregation SMC protein homolg] [GN:smc] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene name:ylqA] [LE:67539]


[RE:71099] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4725415_c2_873
1891
5663
2337
778
3205
0.0










Description


gp:[GI:d1023422:g2463561] [LN:AB007500] [AC:AB007500:D28879]


[PN:penicillin-binding protein 1] [GN:pbpA] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:NCTC8325) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus genes for penicillin-binding protein 1, MraY, MurD,


partial and complete cds.] [LE:594] [RE:2828] [DI:direct] >gp:[GI:g2149893]


[LN:SAU94706] [AC:U94706] [PN:penicillin-binding protein 1] [GN:pbpA]


[OR:Staphylococcus aureus] [DB genpept-bct2] [DE:Staphylococcus aureus


strain ATCC 8325-4 cell wall/cell division gene cluster, yllB, yllC, yllD,


pbpA, mraY, murD, div1B, ftsA and ftsZ genes, complete cds.] [LE:2318]


[RE:4552] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4741010_c3_956
1892
5664
846
281
650
9.8e−64










Description


sp:[LN:SUHB_BACSU] [AC:Q45499] [GN:SUHB] [OR:BACILLUS SUBTILIS]


[DE:EXTRAGENIC SUPPRESSOR PROTEIN SUHB HOMOLOG] [SP:Q45499] [DB:swissprot]


>pir:[LN:E69864] [AC:E69864] [PN:myo-inositol-1(or 4)-monophosphatase


homolog yktC] [GN:yktC] [CL:suppressor protein suhB] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185057:g2633838] [LN:BSUB0008] [AC:Z99111:AL009126]


[GN:yktC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 8 of 21):from 1394791 to 1603020.]


[NT:similar to myo-inositol-1(or 4)-monophosphatase] [SP:Q45499] [LE:142056]


[RE:142853] [DI:direct] >gp:[GI:g3282150] [LN:AF012285]


[AC:AF012285:AF012284:U51911] [PN:unknown] [GN:yktC] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE


gene region.] [NT:similar to E. coli extragenic suppressor protein]


[LE:42544] [RE:43341] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4741703_c2_894
1893
5665
2418
805
2153
5.3e−223










Description


sp:[LN:PRIA_BACSU] [AC:P94461:O34941] [GN:PRIA] [OR:BACILLUS SUBTILIS]


[DE:PRIMOSOMAL PROTEIN N′ (REPLICATION FACTOR Y)] [SP:P94461:O34941]


[DB:swissprot] >pir:[LN:A69682] [AC:A69682] [PN:primosomal replication


factor Y priA] [GN:priA] [CL:unassigned DEAD/H box helicases:DEAD/H box


helicase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185162:g2633943] [LN:BSUB0009] [AC:Z99112:AL009126] [PN:primosomal


replication factor Y (primosomal] [GN:priA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 9 of 21):


from 1598421 to 1807200.] [NT:alternate gene nam: yloJ] [SP:P94461]


[LE:45047] [RE:47464] [DI:direct] >gp:[GI:e323502:g2337800] [LN:BSY13937]


[AC:Y13937] [PN:putative PriA protein] [GN:yloJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM


region.] [SP:P94461] [LE:6819] [RE:9236] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4769512_f2_349
1894
5666
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4781517_c2_888
1895
5667
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4859425_f2_276
1896
5668
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4875055_f1_23
1897
5669
225
74
74
0.015










Description


sp:[LN:Y27B_METJA] [AC:P81234] [GN:MJ0275.1] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0275.1] [SP:P81234] [DB:swissprot]


>gp:[GI:g2826269] [LN:U67482] [AC:U67482:L77117] [PN:M. jannaschii predicted


coding region MJ0275.1] [GN:MJ0275.1] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 24 of 150 of the


complete genome.] [NT:Brute Force ORF; identified by GeneMark; putative]


[LE:9344] [RE:9790] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4875327_f3_587
1898
5670
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4875452_c3_1034
1899
5671
645
214
521
4.6e−50










Description


gp:[GI:g4982295] [LN:AE001811] [AC:AE001811:AE000512] [PN:ribulose-phosphate


3-epimerase] [GN:TM1718] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 123 of 136 of the complete genome.]


[NT:similar to GB:L77117 SP:Q58093 PID:1591395 percent] [LE:2607] [RE:3269]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4876542_f1_176
1900
5672
633
210
551
3.0e−53










Description


pir:[LN:D69862] [AC:D69862] [PN:formylmethionine deformylase homolog ykrB]


[GN:ykrB] [CL:polypeptide deformylase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185046:g2633827] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykrB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to 


formylmethionine deformylase] [LE:130810] [RE:131364] [DI:complement]


>gp:[GI:g3282140] [LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:unknown]


[GN:ykrB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis mobA-nprE gene region.] [NT:similar to polypeptide deformylase from


Mycoplasma] [LE:31298] [RE:31852] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4877203_c1_793
1901
5673
936
311
661
6.7e−65










Description


pir:[LN:H69620] [AC:H69620] [PN:malonyl CoA-acyl carrier protein


transacylase fabD] [GN:fabD] [CL:[acyl-carrier-protein]


S-malonyltransferase:[acyl-carrier-protein] S-malonyltransferase homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185181:g2633962] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:malonyl CoA-acyl carrier protein transacylase]


[GN:fabD] [FN:fatty acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.3.1.39] [DE:Bacillus subtilis complete genome


(section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:ylpE]


[LE:64546] [RE:65499] [DI:direct] >gp:[GI:e323514:g2337819] [LN:BSY13937]


[AC:Y13937] [PN:putative FabD protein] [GN:ylpE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA from the spoVM


region.] [LE:26318] [RE:27271] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4899187_f3_569
1902
5674
1149
382
402
1.9e−37










Description


pir:[LN:B69875] [AC:B69875] [PN:conserved hypothetical protein ylbM]


[GN:ylbM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e334781:g2340009]


[LN:BS16823KB] [AC:Z98682] [PN:YlbM protein] [GN:ylbM] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA 23.9 kB


fragment.] [LE:18936] [RE:20183] [DI:complement] >gp:[GI:e1185096:g2633877]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ylbM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins]


[LE:178419] [RE:179666] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_4970462_c2_904
1903
5675
750
249
837
1.5e−83










Description


sp:[LN:FABG_BACSU] [AC:P51831:O31733] [GN:FABG] [OR:BACILLUS SUBTILIS]


[EC:1.1.1.100] [DE:ACYL CARRIER PROTEIN REDUCTASE)] [SP:P51831:O31733]


[DB:swissprot] >pir:[LN:A69621] [AC:A69621:PC4176]


[PN:3-oxoacyl-[acyl-carrier-protein] reductase,:3-ketoacyl-acyl carrier


protein reductase fabG:srb protein] [GN:fabG:srb] [CL:ribitol


dehydrogenase:short-chain alcohol dehydrogenase homology] [OR:Bacillus


subtilis] [EC:1.1.1.100] [DB:pir2] >gp:[GI:e1185182:g2633963] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:3-ketoacyl-acyl carrier protein reductase]


[GN:fabG] [FN:fatty acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.1.1.100] [DE:Bacillus subtilis complete genome


(section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:ylpF]


[SP:P51831] [LE:65492] [RE:66232] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5080260_f1_43
1904
5676
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5096012_f3_481
1905
5677
231
76





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5117162_c2_826
1906
5678
1023
340
925
7.1e−93










Description


gp:[GI:d1039221:g4514629] [LN:AB016894] [AC:AB016894] [PN:bd-type quinol


oxidase subunit II] [GN:cbdB] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (strain:K1041) DNA] [DB:genpept-bct1] [DE:Bacillus


stearothermophilus genes for bd-type quinol oxidase subunit I and subunit II,


complete cds.] [NT:cytochrome bd-type quinol oxidase] [LE:1706] [RE:2734]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5157963_f3_573
1907
5679
939
312
219
3.7e−22










Description


pir:[LN:E69827] [AC:E69827] [PN:glycerophosphodiester phosphodiesterase


homolog yhdW] [GN:yhdW] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182963:g2633297] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdW]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [NT:similar to


glycerophosphodiester phosphodiesterase] [LE:37668] [RE:38399]


[DI:complement] >gp:[GI:e1191883:g2226218] [LN:BSY14082] [AC:Y14082]


[PN:hypothetical protein] [GN:yhdW] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 72 to 75 degrees:spoVR to


sspB.] [NT:Similarity to glycerol diester phosphodiesterase] [LE:24316]


[RE:25047] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5162760_f3_514
1908
5680
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5276712_c3_1016
1909
5681
708
235
659
1.1e−64










Description


sp:[LN:DCOP_LACLC] [AC:P50924] [GN:PYRF] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSP CREMORIS:STREPTOCOCCUS CREMORIS] [EC:4.1.1.23] [DE:DECARBOXYLASE)]


[SP:P50924] [DB:swissprot] >gp:[GI:e264705:g1070361] [LN:LLCPYRDB]


[AC:X74207] [PN:OMP decarboxylase] [GN:pyrF] [OR:Lactococcus lactis]


[DB:genpept-bct1] [DE:L. lactis pyrD and pyrF genes.] [SP:P50924] [LE:5309]


[RE:6022] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_595312_c1_733
1910
5682
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5974138_f1_158
1911
5683
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_5978453_c3_1029
1912
5684
492
163
261
1.6e−22










Description


sp:[LN:DEF_BACSU] [AC:P94462] [GN:DEF] [OR:BACILLUS SUBTILIS] [EC:3.5.1.31]


[DE:DEFORMYLASE)] [SP:P94462] [DB:swissprot] >pir:[LN:F69613] [AC:F69613]


[PN:polypeptide deformylase def] [GN:def] [CL:polypeptide deformylase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e290287:g1772499] [LN:BSPRIADFS]


[AC:Y10304] [PN:polypeptide deformylase] [GN:def] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis priA, def, fmt, sun genes.] [SP:P94462]


[LE:1762] [RE:2244] [DI:direct] >gp:[GI:e1185163:g2633944] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:polypeptide deformylase] [GN:def] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:3.5.1.31] [DE:Bacillus subtilis complete


genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate gene name:


yloK] [SP:P94462] [LE:47491] [RE:47973] [DI:direct]


>gp:[GI:e323523:g2337801] [LN:BSY13937] [AC:Y13937] [PN:putative Def


protein] [GN:yloK] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA from the spoVM region.] [SP:P94462]


[LE:9263] [RE:9745] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6023593_c1_730
1913
5685
288
95
296
3.2e−26










Description


pir:[LN:D69873] [AC:D69873] [PN:hypothetical protein ylaN] [GN:ylaN]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185074:g2633855] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ylaN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:157027] [RE:157308] [DI:direct]


>gp:[GI:e1191897:g2224773] [LN:BSZ97025] [AC:Z97025] [GN:ylaN] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis nprE,


yla[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] and pycA genes.] [LE:11286] [RE:11567]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6072125_c1_766
1914
5686
672
223
857
1.1e−85










Description


gp:[GI:g4009493] [LN:AF068904] [AC:AF068904] [PN:YlmE] [GN:ylmE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus cell


division protein FtsZ (ftsZ) gene, partial cds; YlmD (ylmD), YlmE (ylmE),


YlmF (ylmF), YlmG (ylmG),and YlmH (ylmH) genes, complete cds; and cell


division protein DivIVA (divIVA) gene, partial cds.] [NT:similar to Bacillus


subtilis YlmE] [LE:1246] [RE:1920] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6115700_f3_647
1915
5687
1404
467
356
7.8e−64










Description


pir:[LN:H69858] [AC:H69858] [PN:cation ABC transporter (ATP-binding protei)


homolog ykoD] [GN:ykoD] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1181522:g2632042] [LN:BSAJ2571] [AC:AJ002571]


[PN:YkoD] [GN:ykoD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis 168 56 kb DNA fragment between xlyA and ykoR.] [NT:homologous to 


cobalt transport ATP binding protein] [LE:41106] [RE:42578] [DI:complement]


>gp:[GI:e1183342:g2633676] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykoD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to 


cation ABC transporter (ATP-binding] [LE:194055] [RE:195527] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6131693_c1_762
1916
5688
414
137
574
1.1e−55










Description


gp:[GI:d1023421:g2463560] [LN:AB007500] [AC:AB007500:D28879]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:NCTC8325) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for penicillin-binding


protein 1, MraY, MurD, partial and complete cds.] [NT:unnamed protein


product] [LE:212] [RE:613] [DI:direct] >gp:[GI:g2149892] [LN:SAU94706]


[AC:U94706] [PN:cell division protein] [GN:yllD] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus strain ATCC 8325-4 cell


wall/cell division gene cluster, yllB, yllC, yllD, pbpA, mraY, murD, div1B,


ftsA and ftsZ genes, complete cds.] [LE:1936] [RE:2337] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6149077_c3_1033
1917
5689
891
296
708
7.0e−70










Description


pir:[LN:A69879] [AC:A69879] [PN:conserved hypothetical protein yloQ]


[GN:yloQ] [CL:conserved hypothetical protein HI1714] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185169:g2633950] [LN:BSUB0009] [AC:Z99112:AL009126]


[GN:yloQ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 9 of 21):from 1598421 to 1807200.]


[NT:similar to hypothetical proteins] [LE:54082] [RE:54978] [DI:direct]


>gp:[GI:e323525:g2337807] [LN:BSY13937] [AC:Y13937] [PN:YloQ protein]


[GN:yloQ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis genomic DNA from the spoVM region.] [LE:15854] [RE:16750]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_632762_f3_671
1918
5690
222
73





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_642_c3_1005
1919
5691
2784
927
4356
0.0










Description


sp:[LN:SYI_STAAU] [AC:P41972] [GN:ILES] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.1.1.5] [DE:(ILERS)] [SP:P41972] [DB:swissprot] >pir:[LN:S40178]


[AC:S40178] [PN:isoleucine--tRNA ligase,:isoleucyl-tRNA synthetase]


[CL:isoleucine--tRNA ligase] [OR:Staphylococcus aureus] [EC:6.1.1.5]


[DB:pir2] >gp:[GI:g437916] [LN:SAILES] [AC:X74219] [PN:isoleucyl-tRNA


synthetase] [GN:ileS] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus gene for isoleucyl-tRNA synthetase.] [SP:P41972] [LE:91]


[RE:2844] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6720452_c3_936
1920
5692
1356
451
1266
5.2e−129










Description


gp:[GI:d1039220:g4514628] [LN:AB016894] [AC:AB016894] [PN:bd-type quinol


oxidase subunit I] [GN:cbdA] [OR:Bacillus stearothermophilus] [SR:Bacillus


stearothermophilus (strain:K1041) DNA] [DB:genpept-bct1] [DE:Bacillus


stearothermophilus genes for bd-type quinol oxidase subunit I and subunit II,


complete cds.] [NT:cytochrome bd-type quinol oxidase] [LE:363] [RE:1709]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6720655_f3_530
1921
5693
147
48
68
0.045










Description


gp:[GI:g4049913] [LN:AF063866] [AC:AF063866] [PN:ORF MSV141 hypothetical


protein] [GN:MSV141] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vr1] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:121430] [RE:121630] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_6834687_c2_831
1922
5694
309
102
209
5.3e−17










Description


pir:[LN:C69864] [AC:C69864] [PN:hypothetical protein yktA] [GN:yktA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185054:g2633835] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:yktA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:140551] [RE:140817] [DI:direct]


>gp:[GI:g3282148] [LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:unknown]


[GN:yktA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis mobA-nprE gene region.] [LE:41039] [RE:41305] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_7225000_c3_1038
1923
5695
1026
341
898
5.2e−90










Description


pir:[LN:H69679] [AC:H69679] [PN:involved in fatty acid/phospholipid


synthesis plsX] [GN:plsX] [CL:phospholipid synthesis protein] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185180:g2633961] [LN:BSUB0009]


[AC:Z99112:AL009126] [GN:plsX] [FN:involved in fatty acid/phospholipid


synthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21):from 1598421 to 1807200.] [NT:alternate


gene name:ylpD] [LE:63526] [RE:64527] [DI:direct] >gp:[GI:e323529:g2337818]


[LN:BSY13937] [AC:Y13937] [PN:putative PlsX protein] [GN:ylpD] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA


from the spoVM region.] [LE:25298] [RE:26299] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_7320465_c1_719
1924
5696
831
276
525
1.7e−50










Description


pir:[LN:G70179] [AC:G70179] [PN:spermidine/putrescine ABC transporter,


permease protein (potC) homolog] [CL:spermidine/putrescine transport system


permease protein potI] [OR:Borrelia burgdorferi] [SR:, Lyme disease


spirochete] [DB:pir2] >gp:[GI:g2688564] [LN:AE001165] [AC:AE001165:AE000783]


[PN:spermidine/putrescine ABC transporter, permease] [GN:BB0640]


[OR:Borrelia burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2]


[DE:Borrelia burgdorferi (section 51 of 70) of the complete genome.]


[NT:similar to GB:M64519 SP:P23859 PID:147328 GB:U00096] [LE:10307]


[RE:11098] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_867176_c3_924
1925
5697
1512
503
1090
2.3e−110










Description


pir:[LN:C70468] [AC:C70468] [PN:phosphoribosylaminoimidazolecarboxamide


formyltransferase] [GN:purH] [CL:purH bifunctional enzyme] [OR:Aquifex


aeolicus] [DB:pir2] >gp:[GI:g2984204] [LN:AE000765] [AC:AE000765:AE000657]


[PN:phosphoribosylaminoimidazolecarboxamide] [GN:purH] [OR:Aquifex aeolicus]


[DB:genpept-bct2] [DE:Aquifex aeolicus section 97 of 109 of the complete


genome.] [LE:7599] [RE:9119] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_892141_f2_303
1926
5698
396
131
281
1.2e−24










Description


gp:[GI:e1487496:g5042304] [LN:MMU242955] [AC:AJ242955] [PN:hypothetical


protein (P4(21)n)] [GN:P4(21)n] [OR:Mus musculus] [SR:house mouse]


[DB:genpept-rod] [DE:Mus musculus partial mRNA for hypothetical protein


(P4(21)n gene).] [NT:similar with amyh_yeast glucoamylase S1/S2] [LE:<1]


[RE:1203] [DI:direct] >gp:[GI:d1042681:g5103287] [LN:AB028868] [AC:AB028868]


[GN:P4(21)n] [OR:Mus musculus] [SR:Mus musculus mRNA] [DB:genpept] [DE:Mus


musculus P4(21)n mRNA, partial cds.] [NT:The protein is similar with


AMYH_YEAST GLUCOAMYLASE] [LE:<1] [RE:1203] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_892312_c3_980
1927
5699
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_968785_f2_361
1928
5700
939
312
1274
7.4e−130










Description


gp:[GI:g3320606] [LN:AF072726] [AC:AF072726] [PN:putative heme A synthase]


[GN:ctaA] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus putative heme A synthase (ctaA) gene, complete cds.] [NT:CtaA]


[LE:139] [RE:1050] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_968811_c1_753
1929
5701
651
216
599
2.5e−58










Description


sp:[LN:DHSC_BACSU] [AC:P08064] [GN:SDHC] [OR:BACILLUS SUBTILIS]


[DE:SUCCINATE DEHYDROGENASE CYTOCHROME B-558 SUBUNIT] [SP:P08064]


[DB:Swissprot] >pir:[LN:DEBSSC] [AC:A29843:I39972:E69704] [PN:succinate


dehydrogenase, cytochrome b558:fumarate reductase C protein] [GN:sdhC:sdhA]


[CL:succinate dehydrogenase cytochrome b558] [OR:Bacillus subtilis]


[EC:1.3.99.1] [DB:pir1] [MP:70] >gp:[GI:g143525] [LN:BACSDHAB]


[AC:M13470:M15107] [OR:Bacillus subtilis] [SR:B. subtilis DNA, clone pKIM4]


[DB:genpept-bct1] [DE:B. subtilis succinate dehydrogenase complex encoding


cytochrome b-558 subunit, complete cds, and flavoprotein subunit, 5′ end.]


[NT:succinate dehydrogenase cytochrome b-558 subunit] [LE:265] [RE:873]


[DI:direct] >gp:[GI:e1184094:g2635310] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:succinate dehydrogenase (cytochrome b558] [GN:sdhC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21):from 2795131 to 3013540.] [SP:P08064] [LE:112102] [RE:112710]


[DI:complement] >gp:[GI:e1165347:g1770051] [LN:BSZ75208] [AC:Z75208]


[PN:cytochrome b558 subunit of succinate] [GN:sdhC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.3.99.1] [DE:B. subtilis genomic sequence 89009bp.]


[SP:P08064] [LE:57197] [RE:57805] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_969052_f2_434
1930
5702
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_9881927_f1_75
1931
5703
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_990702_c1_765
1932
5704
1185
394
1809
1.5e−186










Description


sp:[LN:FTSZ_STAAU] [AC:P45498] [GN:FTSZ] [OR:STAPHYLOCOCCUS AUREUS] [DE:CELL


DIVISION PROTEIN FTSZ] [SP:P45498] [DB:swissprot] >pir:[LN:S58814]


[AC:S58814] [PN:cell division protein ftsZ] [CL:cell division protein ftsZ]


[OR:Staphylococcus aureus] [DB:pir1] >gp:[GI:g458428] [LN:SAU06462]


[AC:U06462] [PN:FtsZ] [GN:ftsZ] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus SA4 FtsZ (ftsZ) gene, complete cds.] [LE:27]


[RE:1199] [DI:direct] >gp:[GI:g2149898] [LN:SAU94706] [AC:U94706] [PN:cell


division protein] [GN:ftsZ] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus strain ATCC 8325-4 cell wall/cell division gene


cluster, yllB, yllC, yllD, pbpA, mraY, murD, div1B, ftsA and ftsZ genes,


complete cds.] [LE:10052] [RE:11224] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_9923437_f2_345
1933
5705
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_9925910_c2_813
1934
5706
597
198
430
2.0e−40










Description


sp:[LN:PUR3_BACSU] [AC:P12040] [GN:PURN] [OR:BACILLUS SUBTILIS] [EC:2.1.2.2]


[DE:TRANSFORMYLASE) (5′-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE)]


[SP:P12040] [DB:swissprot] >pir:[LN:XYBSGF] [AC:I29326:B69685]


[PN:phosphoribosylglycinamide formyltransferase,] [GN:purN]


[CL:phosphoribosylglycinamide formyltransferase:phosphoribosylglycinamide


formyltransferase homology] [OR:Bacillus subtilis] [EC:2.1.2.2] [DB:pir1]


[MP:18 min] >gp:[GI:g143372] [LN:BACPURF] [AC:J02732:K00047] [OR:Bacillus


subtilis] [SR:B. subtilis (strain DE1 (prototroph DER. or W168)) DNA, clone


pPZ] [DB:genpept-bct1] [DE:B. subtilis pur operon encoding purine


biosynthesis enzymes, 12 genes.] [NT:phosphoribosyl glycinamide


formyltransferase] [LE:9833] [RE:10420] [DI:direct]


>gp:[GI:e1182631:g2632965] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:phosphoribosylglycinamide formyltransferase] [GN:purN] [FN:purine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.1.2.2]


[DE:Bacillus subtilis complete genome (section 4 of 21):from 600701


to 813890.] [SP:P12040] [LE:106815] [RE:107402] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_9933463_c3_933
1935
5707
1188
395
897
6.6e−90










Description


sp:[LN:YWBD_BACSU] [AC:P39587] [GN:YWBD:IPA-19D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 44.4 KD PROTEIN IN EPR-GALK INTERGENIC REGION] [SP:P39587]


[DB:swissprot] >pir:[LN:S39674] [AC:S39674:B70051] [PN:ywbD]


protein:hypothetical protein ipa-19d] [GN:ywbD] [CL:probable


methyltransferase b0967] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g413943]


[LN:BSGENR] [AC:X73124] [GN:ipa-19d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39587]


[LE:20551] [RE:21741] [DI:direct] >gp:[GI:e1186335:g2636371] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywbD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:alternate gene name:ipa-19d; similar to]


[SP:P39587] [LE:136218] [RE:137408] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000990_9954640_f3_487
1936
5708
228
75
117
3.0e−07










Description


gp:[GI:g2196686] [LN:EFU25090] [AC:U25090] [PN:pyrimidine biosynthesis


protein Ab] [GN:pyrAb] [OR:Enterococcus faecalis] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pKV48 pyrimidine biosynthesis protein Ab


(pyrAb) gene, partial cds.] [LE:<1] [RE:>253] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_10928_f1_70
1937
5709
1242
413
238
1.4e−17










Description


pir:[LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp:[GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN:hypothetical protein] [OR:Rhodobacter capsulatus] [DB:genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_10948587_c1_430
1938
5710
822
273
757
4.5e−75










Description


gp:[GI:g4160468] [LN:AF109909] [AC:AF109909] [PN:putative protein] [GN:ykoY]


[OR:Bacillus megaterium] [DB:genpept-bct2] [DE:Bacillus megaterium


polyhydroxyalkanoate gene cluster, complete sequence.] [NT:similar to toxic


anion resistance protein] [LE:277] [RE:1092] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_11210760_f2_261
1939
5711
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_11220301_c2_523
1940
5712
126
41
108
3.4e−06










Description


pir:[LN:QQSA8T] [AC:A04493] [PN:hypothetical protein B-189]


[OR:Staphylococcus aureus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_1180328_c3_606
1941
5713
816
271
372
2.8e−34










Description


pir:[LN:H70003] [AC:H70003] [PN:probable prolyl aminopeptidase,


ytxM:cytosol aminopeptidase V:Pro-X aminopeptidase:proline


aminopeptidase:proline iminopeptidase] [GN:ytxM] [OR:Bacillus subtilis]


[EC:3.4.11.5] [DB:pir2] >gp:[GI:e1185954:g2635565] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytxM] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:alternate gene name:ytfB; similar to prolyl]


[LE:151061] [RE:151885] [DI:complement] >gp:[GI:g2293147] [LN:AF008220]


[AC:AF008220] [PN:YtxM] [GN:ytxM] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similarity with


2-hydroxy-6-oxo-2,4-heptadienoate] [LE:28542] [RE:29366] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_12239817_c2_520
1942
5714
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_12681510_f3_365
1943
5715
825
274
702
3.0e−69










Description


pir:[LN:F69841] [AC:F6984l] [PN:conserved hypothetical protein yitU]


[GN:yitU] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e261990:g1620926]


[LN:BS168NPRB] [AC:Z79580] [GN:putative orf] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis nprB gene.] [LE:4492] [RE:5304]


[DI:complement] >gp:[GI:e1183116:g2633450] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yitU] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to hypothetical proteins] [LE:190463]


[RE:191275] [DI:complement] >gp:[GI:e1173548:g2145415] [LN:BSY09476]


[AC:Y09476] [PN:YitU] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54 kb genomic DNA fragment.] [NT:putative ORF] [LE:47689]


[RE:48501] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_12750290_c1_400
1944
5716
1122
373
1233
1.6e−125










Description


pir:[LN:B69669] [AC:B69669:S15233:D38447] [PN:oligopeptide transport


ATP-binding protein oppD:sporulation initiation protein spo0KD]


[GN:spo0KD:oppD] [CL:inner membrane protein malK:ATP-binding cassette


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183166:g2633500]


[LN:BSUB0007] [AC:Z99110:AL009126] [PN:oligopeptide ABC transporter


(ATP-binding] [GN:oppD] [FN:required for initiation of sporulation,]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 7 of 21):from 1194391 to 1411140.] [NT:alternate gene name:


spo0KD] [LE:28537] [RE:29613] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_13089052_f3_290
1945
5717
240
79
112
1.0e−06










Description


pir:[LN:A60998] [AC:A60998] [PN:replication protein REP] [OR:Staphylococcus


aureus] [DB:pir2] >gp:[GI:g295834] [LN:SAPOX2000] [AC:X55798]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus plasmid pOX2000.]


[NT:ORF 154] [LE:587] [RE:1051] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_13829403_f1_46
1946
5718
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_13848387_f2_141
1947
5719
240
79
131
9.8e−09










Description


pir:[LN:S75993] [AC:S75993] [PN:hypothetical protein] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1011491:g1001353] [LN:SYCSLLLH] [AC:D64006:AB001339]


[PN:hypothetical protein] [GN:clpP] [OR:Synechocystis sp.] [SR:Synechocystis


sp. (strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 25/27, 3138604–3270709.] [NT:ORF_ID:s110498] [LE:80076]


[RE:80528] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_1445930_f2_152
1948
5720
621
206
103
0.0023










Description


pir:[LN:A70417] [AC:A70417] [PN:hypothetical protein aq_1349] [GN:aq_1349]


[OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2983776] [LN:AE000736]


[AC:AE000736:AE000657] [PN:putative protein] [GN:aq_1349] [OR:Aquifex


aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 68 of 109 of the


complete genome.] [LE:1950] [RE:2756] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14460882_c1_443
1949
5721
1722
573
1304
4.9e−133










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14460887_f1_3
1950
5722
153
50
115
1.7e−06










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14484553_c2_467
1951
5723
1356
451
1726
9.3e−178










Description


sp:[LN:G6PA_BACST] [AC:P13375] [GN:PGIA] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:5.3.1.9] [DE:ISOMERASE A)] [SP:P13375] [DB:swissprot] >pir:[LN:NUBSSA]


[AC:S15936:S06196] [PN:glucose-6-phosphate isomerase, A:phosphoglucose


isomerase:phosphohexose isomerase] [CL:glucose-6-phosphate isomerase]


[OR:Bacillus stearothermophilus] [EC:5.3.1.9] [DB:pir1] >gp:[GI:g40046]


[LN:BSPGIA] [AC:X16639] [OR:Bacillus stearothermophilus] [DB:genpept-bct1]


[DE:Bacillus stearothermophilus pgiA gene for phosphoglucoisomeraseisoenzyme


A (EC 5.3.1.9).] [NT:phosphoglucose isomerase A (AA 1–449)] [SP:P13375]


[LE:95] [RE:1444] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14648512_c3_585
1952
5724
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14656432_c3_582
1953
5725
168
55
78
0.033










Description


gp:[GI:g3158514] [LN:CELT04D1] [AC:AF067617] [GN:T04D1.2] [OR:Caenorhabditis


elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans cosmid T04D1.]


[LE:10425:10567:11420:12480] [RE:10517:10646:11689:12789] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_14884437_c1_437
1954
5726
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_15038450_c2_469
1955
5727
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_16683437_f1_5
1956
5728
1023
340
571
2.3e−55










Description


pir:[LN:A69863] [AC:A69863] [PN:conserved hypothetical protein ykrP]


[GN:ykrP] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184942:g2633723]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykrP] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins]


[LE:22614] [RE:23636] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_16832562_f1_67
1957
5729
804
267
320
4.5e−36










Description


pir:[LN:H69843] [AC:H69843] [PN:hypothetical protein yjbH] [GN:yjbH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183175:g2633509] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:38695] [RE:39522] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_187683_c1_417
1958
5730
228
75
256
1.3e−23










Description


sp:[LN:BIN3_STAAU] [AC:P20384] [GN:BIN3] [OR:STAPHYLOCOCCUS AUREUS]


[DE:POTENTIAL DNA-INVERTASE BIN3 (TRANSPOSON TN552)] [SP:P20384]


[DB:swissprot] >gp:[GI:g398182] [LN:SABINR3] [AC:X16298] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus plasmid pI9789 DNA with


binR and bin3 genes, derived from transposon TN552.] [NT:bin3 product]


[SP:P20384] [LE:1049] [RE:1657] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_195177_c2_521
1959
5731
141
46
127
2.6e−08










Description


pir:[LN:S42239] [AC:S42239] [PN:hypothetical protein 3] [OR:Staphylococcus


aureus] [DB:pir2] >gp:[GI:g501834] [LN:PNS1CG] [AC:M16217] [OR:Plasmid pNS1]


[SR:Plasmid pNS1 from Staphylococcus aureus, plasmid pTP5 DNA]


[DB:genpept-bct1] [DE:Plasmid pNS1 (from Staphylococcus aureus)


encoding tetracycline-resistance (tet), complete genome.] [NT:ORF C;


putative] [LE:1870] [RE:2409] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_19531626_f3_304
1960
5732
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_19547938_c2_498
1961
5733
372
123
224
7.4e−18










Description


sp:[LN:G6PD_LEUME] [AC:P11411] [GN:ZWF] [OR:LEUCONOSTOC MESENTEROIDES]


[EC:1.1.1.49] [DE:GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE, (G6PD)] [SP:P11411]


[DB swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_19566553_c1_428
1962
5734
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_1960952_c2_473
1963
5735
906
301
575
8.7e−56










Description


pir:[LN:C69837] [AC:C69837] [PN:5-oxo-1,2,5-tricarboxilic-3-penten acid de


homolog yisK] [GN:yisK] [CL:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183077:g2633411] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yisK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to 5-oxo-1,2,5-tricarboxilic-3-penten


acid] [LE:152216] [RE:153121] [DI:direct] >gp:[GI:e1173509:g2145376]


[LN:BSY09476] [AC:Y09476] [PN:YisK] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54 kb genomic DNA fragment.] [NT:putative - Homology with


oxo-tricarboxilic-pentene] [LE:9442] [RE:10347] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_19610442_f1_56
1964
5736
246
81
219
4.6e−18










Description


gp:[GI:d1045996:g5360820] [LN:D86934] [AC:D86934] [PN:transposase]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N026; putative] [LE:19527]


[RE:19751] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_19790902_c2_493
1965
5737
813
270
919
3.1e−92










Description


pir:[LN:F69844] [AC:F69844] [PN:conserved hypothetical protein yjbN]


[GN:yjbN] [CL:conserved hypothetical protein HI0072] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183181:g2633515] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjbN] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21):from 1194391 to 1411140.]


[NT:similar to hypothetical proteins] [LE:42741] [RE:43541] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_20517062_c2_478
1966
5738
1002
333
961
1.1e−96










Description


pir:[LN:F69842] [AC:F69842] [PN:3-oxoacyl-acyl-carrier protein synthase


homolog yjaX] [GN:yjaX] [CL:3-oxoacyl-[acyl-carrier-protein] synthase III]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183136:g2633470] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yjaX] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to 3-oxoacyl- acyl-carrier protein]


[LE:208189] [RE:209127] [DI:direct] >gp:[GI:e1183153:g2633487] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjaX] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [NT:similar to 3-oxoacyl- acyl-carrier protein]


[LE:13299] [RE:14237] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_20585302_f2_149
1967
5739
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_20739037_c1_452
1968
5740
426
141
690
5.7e−68










Description


gp:[GI:g2267243] [LN:SEU71377] [AC:U71377] [PN:putative transcriptional


regulator AtlR] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:Staphylococcus epidermidis autolysin AtlE and putative transcriptional


regulator AtlR genes, complete cds.] [LE:6867] [RE:7286] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_2125903_f3_313
1969
5741
1239
412
197
6.2e−13










Description


pir:[LN:D71112] [AC:D71112] [PN:hypothetical protein PH0667] [GN:PH0667]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030701:g3257075]


[LN:AP000003]


[AC:AP000003:AB009484:AB009485:AB009486:AB009487:AB009488:AB009489]


[PN:413aa long hypothetical protein] [GN:PH0667] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 544001–777000 nt. position(3/7).] [LE:51915]


[RE:53156] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_21571937_f3_380
1970
5742
213
70
54
0.015










Description


pir:[LN:F71120] [AC:F71120] [PN:hypothetical protein PH0733] [GN:PH0733]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030767:g3257141]


[LN:AP000003]


[AC:AP000003:AB009484:AB009485:AB009486:AB009487:AB009488:AB009489]


[PN:150aa long hypothetical protein] [GN:PH0733] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 544001–777000 nt. position(3/7).] [LE:107943]


[RE:108395] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_21594202_f2_167
1971
5743
1176
391
1674
3.0e−172










Description


gp:[GI:e1301685:g3256224] [LN:SAY14370] [AC:Y14370] [GN:ypfP]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus RF3,


murE, ypfP genes.] [LE:5160] [RE:6335] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_21753125_c2_481
1972
5744
1194
397
664
2.0e−79










Description


pir:[LN:S16649] [AC:S16649:S18271:E69618:I40001] [PN:dipeptide ABC


transporter (permease):dciAC protein] [GN:dppC:dciAC] [CL:oligopeptide


permease protein oppB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[G1:e1181495:g2632015] [LN:BSAJ2571] [AC:AJ002571] [PN:DppC] [GN:dppC]


[FN:ABC-type dipeptide transport system] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment between xlyA


and ykoR.] [LE:14301] [RE:15263] [DI:direct] >gp:[GI:e1183314:g2633648]


[LN:BSUB0007] [AC:Z99110:AL009126] [PN:dipeptide ABC transporter (permease)]


[GN:dppC] [OR:Bacillus siibtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:alternate


gene name:dciAC] [LE:167250] [RE:168212] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_22272583_f3_291
1973
5745
123
40
86
0.0040










Description


gp:[GI:g4098413] [LN:LOU77495] [AC:U77495] [PN:putative integrase] [GN:int]


[OR:Leuconostoc oenos bacteriophage 10MC] [DB:genpept-phg] [DE:Leuconostoc


oenos bacteriophage 10MC putative integrase (int) gene, complete cds.]


[NT:site-specific recombinase] [LE:119] [RE:1165] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_22456512_f3_286
1974
5746
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_22462787_c1_392
1975
5747
525
174
535
1.5e−51










Description


sp:[LN:LEPH_STAAU] [AC:P72364] [GN:SPSA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:INACTIVE SIGNAL PEPTIDASE IA] [SP:P72364] [DB:swissprot]


>gp:[GI:g1595809] [LN:SAU65000] [AC:U65000] [PN:type-I signal peptidase


SpsA] [GN:spsA] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus type-I signal peptidase SpsA (spsA) gene,


and type-I signal peptidase SpsB (spsB) gene, complete cds.] [NT:inactive


signal peptidase homologue; protein lacks] [LE:40] [RE:564] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_22665887_c3_598
1976
5748
129
42
120
2.4e−07










Description


pir:[LN:D69838] [AC:D69838] [PN:conserved hypothetical protein yisU]


[GN:yisU] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183088:g2633422]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yisU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21):from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:165981] [RE:166643] [DI:complement] >gp:[GI:e1173520:g2145387]


[LN:BSY09476] [AC:Y09476] [PN:YisU] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54 kb genomic DNA fragment.] [NT:putative] [LE:23207]


[RE:23869] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_22703588_f2_137
1977
5749
954
317
803
6.0e−80










Description


sp:[LN:MENA_BACSU] [AC:P39582] [GN:MENA:IPA-6D] [OR:BACILLUS SUBTILIS]


[EC:2.5.1.—] [DE:(DHNA-OCTAPRENYLTRANSFERASE)] [SP:P39582] [DB:swissprot]


>pir:[LN:S39661] [AC:S39661:B70050] [PN:menaquinone biosynthesis protein


homolog ywaB:protein ipa-6d] [GN:ywaB] [CL:quinone biosynthesis homolog


ywaB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g413930] [LN:BSGENR]


[AC:X73124] [GN:ipa-6d] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic region (325 to 333).] [SP:P39582] [LE:5904] [RE:6839]


[DI:direct] >gp:[GI:e1186348:g2636384] [LN:BSUB0020] [AC:Z99123:AL009126]


[GN:ywaB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 20 of 21):from 3798401 to 4010550.]


[NT:alternate gene name:ipa-6d; similar to quinone] [SP:P39582] [LE:151120]


[RE:152055] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23438827_c3_566
1978
5750
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23535910_c1_391
1979
5751
603
200
499
9.8e−48










Description


gp:[GI:g4185300] [LN:AF089862] [AC:AF089862] [PN:unknown] [OR:Staphylococcus


carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus type-I signal


peptidase SipA (sipA) and type-I signal peptidase SipB (sipB) genes, complete


cds; and unknown gene.] [NT:Orf1; similar to Bacillus subtilis yhjE] [LE:271]


[RE:948] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23593932_f2_166
1980
5752
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23611563_c3_600
1981
5753
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23625637_c2_526
1982
5754
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23634641_c1_398
1983
5755
1248
415
1475
3.7e−151










Description


pir:[LN:G69842] [AC:G69842] [PN:3-oxoacyl-[acyl-carrier-protein] synthase,]


[GN:yjaY] [CL:3-oxoacyl-[acyl-carrier-protein] synthase I:


3-oxoacyl-[acyl-carrier-protein] synthase I homology] [OR:Bacillus subtilis]


[EC:2.3.1.41] [DB:pir2] >gp:[GI:e1183137:g2633471] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yjaY] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:similar to 3-oxoacyl- acyl-carrier protein]


[LE:209150] [RE:210391] [DI:direct] >gp:[GI:e1183154:g2633488] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjaY] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [NT:similar to 3-oxoacyl- acyl-carrier protein]


[LE:14260] [RE:15501] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_23678800_c3_561
1984
5756
399
132
395
1.0e−36










Description


pir:[LN:H69841] [AC:H69841] [PN:conserved hypothetical protein yitW]


[GN:yitW] [CL:conserved hypothetical protein MJ1129] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e261991:g1620928] [LN:BS168NPRB] [AC:Z79580] [GN:putative


orf] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


nprB gene.] [LE:6256] [RE:6564] [DI:direct] >gp:[GI:e1183118:g2633452]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yitW] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21):from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:192227] [RE:192535] [DI:direct] >gp:[GI:e1173550:g2145417] [LN:BSY09476]


[AC:Y09476] [PN:YitW] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54 kb genomic DNA fragment.] [NT:putative orf] [LE:49453]


[RE:49761] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_2392300_f2_176
1985
5757
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24022191_f2_232
1986
5758
222
73
97
3.9e−05










Description


pir:[LN:G69854] [AC:G69854] [PN:hypothetical protein yjzD] [GN:yjzD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183130:g2633464] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yjzD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:204697] [RE:204882] [DI:complement]


>gp:[GI:e1183147:g2633481] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:yjzD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [LE:9807]


[RE:9992] [DI:complement] >gp:[GI:d1023798:g2564027] [LN:D86376] [AC:D86376]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:CU741) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis ArgF and med genes, partial and


complete cds.] [NT:unnamed protein product] [LE:1027] [RE:1212]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24024142_c2_496
1987
5759
315
104
93
0.00010










Description


gp:[GI:g2654481] [LN:BFU89914] [AC:U89914] [PN:hypothetical 10.1 kDa


protein] [OR:Bacillus firmus] [DB:genpept-bct2] [DE:Bacillus firmus


hypothetical 34.0 kDa protein, hypothetical 8.9 kDa protein, hypothetical


10.1 kDa protein, hypothetical 21.0 kDa protein, putative thiosulfate


sulfur transferase, hypothetical 16.1 kDa transcriptional regulator and


hypothetical 18.2 kDa protein genes, complete cds, and Na+/H+ antiporter


homolog gene, partial cds.] [NT:orf4] [LE:1601] [RE:1882] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24070137_c3_602
1988
5760
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24105342_c1_448
1989
5761
831
276
1242
1.8e−126










Description


pir:[LN:F69656] [AC:F69656:A42715:S27512] [PN:naphthoate synthase,


menB:DHNA synthase:dihydroxynaphthoate synthase:dihydroxynapthoic acid


synthetase menB:menaquinone biosynthesis enzyme/enoyl CoA hydratase homolog]


[GN:menB] [CL:naphthoate synthase:enoyl-CoA hydratase homology]


[OR:Bacillus subtilis] [EC:4.1.3.36] [DB:pir2] >gp:[GI:e1185953:g2635564]


[LN:BSUB0016] [AC:Z99119:AL009126] [PN:dihydroxynapthoic acid synthetase]


[GN:menB] [FN:menaquinone biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:4.1.3.36] [DE:Bacillus subtilis complete genome


(section 16 of 21):from 2997771 to 3213410.] [LE:150211] [RE:151026]


[DI:complement] >gp:[GI:g2293148] [LN:AF008220] [AC:AF008220]


[PN:dihydroxynaphthoate synthase] [GN:menB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:29401] [RE:30216] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24225010_c2_536
1990
5762
168
55





Description


NO-HIT





AI7503000991_24270451_c1_432
1991
5763
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24409428_c1_438
1992
5764
258
85
357
1.1e−32










Description


gp:[GI:g1731452] [LN:SAU38429] [AC:U38429] [PN:recombination protein]


[GN:pre] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus chloramphenicol resistance plasmid pKH7, complete sequence.] [LE:2074]


[RE:3285] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24412517_c3_581
1993
5765
393
130
213
1.2e−16










Description


sp:[LN:G6PD_BACSU] [AC:P54547] [GN:ZWF] [OR:BACILLUS SUBTILIS] [EC:1.1.1.49]


[DE:PROTEIN 11) (VEG11)] [SP:P54547] [DB:swissprot] >pir:[LN:B69964]


[AC:B69964] [PN:probable glucose-6-phosphate 1-dehydrogenase, yqjJ]


[GN:yqjJ] [CL:glucose-6-phosphate dehydrogenase] [OR:Bacillus subtilis]


[EC:1.1.1.49] [DB:pir2] >gp:[GI:d1013296:g1303961] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqjJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:239025] [RE:240494]


[DI:complement] >gp:[GI:e1185654:g2634820] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to glucose-S-phosphate 1-dehydrogenase]


[SP:P54547] [LE:83125] [RE:84594] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24415632_c1_393
1994
5766
579
192
827
1.7e−82










Description


sp:[LN:LEP_STAAU] [AC:P72365] GN:SPSB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.4.21.89] [DE:SIGNAL PEPTIDASE IB, (SPASE IB) [LEADER PEPTIDASE IB)]


[SP:P72365] [DB:swissprot] >gp:[GI:g1595810] [LN:SAU65000] [AC:U65000]


[PN:type-I signal peptidase SpsB] [GN:spsB] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus type-I signal peptidase SpsA


(spsA) gene, and type-I signal peptidase SpsB (spsB) gene, complete cds.]


[NT:signal peptidase, leader peptidase, serine] [LE:580] [RE:1155]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24416702_f2_125
1995
5767
4008
1335
7001
0.0










Description


gp:[GI:g2267242] [LN:SEU71377] [AC:U71377] [PN:autolysin AtlE]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:Staphylococcus


epidermidis autolysin AtlE and putative transcriptional regulator AtlR genes,


complete cds.] [NT:primary attachment to a polystyrene surface] [LE:2620]


[RE:6627] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24428543_f3_297
1996
5768
174
57
72
0.017










Description


gp:[GI:g153715] [LN:STRMLIKEE] [AC:L05021] [PN:M-like protein]


[OR:Streptococcus pyogenes] [SR:Streptococcus pyogenes DNA]


[DB:genpept-bct1] [DE:Streptococcus pyogenes M-like protein gene, partial


cds.] [LE:<1] [RE:>243] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24475252_f3_289
1997
5769
159
52





Description


NO-HIT





AI7503000991_24646886_c3_594
1998
5770
1557
518
296
2.0e−23










Description


pir:[LN:B71973] [AC:B71973] [PN:2′,3′-cyclic-nucleotide


2′-phosphodiesterase] [GN:cpdB] [CL:2′,3′-cyclic-nucleotide


2′-phosphodiesterase:2′,3′-cyclic-nucleotide 2′-phosphodiesterase


homology:phosphoesterase core homology] [OR:Helicobacter pylori] [SR:strain


J99, , strain J99] [SR:strain J99,] [DB:pir2] >gp:[GI:g4154615]


[LN:AE001449] [AC:AE001449:AE001439] [PN:2′,3′-CYCLIC-NUCLEOTIDE


2′-PHOSPHODIESTERASE] [GN:cpdB] [OR:Helicobacter pylori J99]


[DB:genpept-bct2] [DE:Helicobacter pylori, strain J99 section 10 of 132 of


the complete genome.] [NT:similar to H. pylori 26695 gene HP0104] [LE:139]


[RE:1884] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24648412_c1_406
1999
5771
642
213
683
3.1e−67










Description


pir:[LN:E69844] [AC:E69844] [PN:GTP pyrophosphokinase homolog yjbM]


[GN:yjbM] [CL:GTP pyrophosphokinase related protein] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183180:g2633514] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjbM] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21):from 1194391 to 1411140.]


[NT:similar to GTP pyrophosphokinase] [LE:42087] [RE:42722] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24745437_c3_539
2000
5772
1263
420
1659
1.2e−170










Description


sp:[LN:YPCA_BACSU] [AC:P50735] [GN:YPCA] [OR:BACILLUS SUBTILIS] [EC:1.4.1.—]


[DE:(EC 1.4.1.—)] [SP:P50735] [DB:swissprot] >pir:[LN:G69933] [AC:G69933]


[PN:glutamate dehydrogenase homolog ypcA] [GN:ypcA] [CL:glutamate


dehydrogenase (NAD(P)+)] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183741:g2634714] [LN:BSUB0012] [AC:Z99115:AL009126] [GN:ypcA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 12 of 21):from 2195541 to 2409220.] [NT:similar to


glutamate dehydrogenase] [SP:P50735] [LE:205764] [RE:207044] [DI:complement]


>gp:[GI:e1185565:g2634731] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:ypcA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21):from 2395261 to 2613730.] [NT:similar to


glutamate dehydrogenase] [SP:P50735] [LE:6044] [RE:7324] [DI:complement]


>gp:[GI:g1146206] [LN:BACSERA] [AC:L47648] [PN:glutamate dehydrogenase]


[GN:ypcA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA, ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+


dependent glycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes, complete cds.] [NT:similar to Clostridium difficile glutamate]


[LE:9353] [RE:10633] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_24804677_c3_597
2001
5773
366
121
117
1.5e−06










Description


gp:[GI:g2541936] [LN:PSU27310] [AC:U27310] [PN:unknown] [OR:Pseudomonas


syringae] [DB:genpept-bct2] [DE:Pseudomonas syringae phaseolotoxin gene


cluster, complete sequence.] [NT:ORF6; similar to Pseudomonas syringae fatty


acid] [LE:5079] [RE:6062] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_25392826_f2_175
2002
5774
1146
381
557
7.0e−54










Description


pir:[LN:G70007] [AC:G70007] [PN:conserved hypothetical protein yueF]


[GN:yueF] [CL:Bacillus subtilis conserved hypothetical protein yueF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184257:g2635675] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yueF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to hypothetical proteins] [LE:64687]


[RE:65796] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_25429512_c3_593
2003
5775
1392
463
1130
1.3e−114










Description


pir:[LN:H69862] [AC:H69862] [PN:Na+-transporting ATP synthase homolog ykrM]


[GN:ykrM] [CL:Na+-ATP synthase chain J] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184940:g2633721] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykrM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to


Na+-transporting ATP synthase] [LE:20743] [RE:22092] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_25430316_c2_522
2004
5776
171
56
171
5.6e−13










Description


pir:[LN:QQSA8T] [AC:A04493] [PN:hypothetical protein B-189]


[OR:Staphylococcus aureus] [DB:pir1]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26178400_c3_542
2005
5777
186
61
71
0.042










Description


sp:[LN:AOPP_HUMAN] [AC:P30044] [OR:HOMO SAPIENS] [SR:,HUMAN] [DE:71B)]


[SP:P30044] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26212787_f3_335
2006
5778
612
203
308
1.7e−27










Description


pir:[LN:C69844] [AC:C69844] [PN:hypothetical protein yjbK] [GN:yjbK]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183178:g2633512] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:40993] [RE:41565] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26377340_c2_488
2007
5779
999
332
208
4.6e−15










Description


gp:[GI:e257629:g1771202] [LN:LLLVSFPEP] [AC:X99710] [PN:transcription


factor] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:L. lactis ORF, genes


homologous to vsf-1 and pepF2 and gene encoding protein homologous to


methyltransferase.] [NT:weak homology with vsf-1 gene (X73635)] [LE:934]


[RE:1917] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26564012_c2_477
2008
5780
2616
871
2649
1.5e−275










Description


gp:[GI:g3150046] [LN:AF016634] [AC:AF016634] [PN:ClpB chaperone homolog]


[GN:clpB] [OR:Lactococcus lactis subsp. cremoris] [DB:genpept-bct2]


[DE:Lactococcus lactis cremoris ClpB chaperone homolog (clpB)


and phosphoribosylformylglycinamide cyclo-ligase (pur5) genes, complete cds;


and phosphoribosylglycinamide formyltransferase (pur3) gene, partial cds.]


[LE:183] [RE:2786] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26567557_c3_558
2009
5781
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26604662_c2_495
2010
5782
630
209





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_26775637_c1_447
2011
5783
1389
462
599
2.5e−58










Description


sp:[LN:MENF_BACSU] [AC:P23973:P23972] [GN:MENF:ICSM] [OR:BACILLUS SUBTILIS]


[EC:5.4.99.6] [DE:MENAQUINONE-SPECIFIC ISOCHORISMATE SYNTHASE,]


[SP:P23973:P23972] [DB:swissprot] >pir:[LN:A69657]


[AC:A69657:S27507:S27508:I39883] [PN:probable isochorismate synthase,


menaquinone-specific menF] [GN:menF] [CL:isochorismate synthase]


[OR:Bacillus subtilis] [EC:5.4.99.6] [DB:pir2] >gp:[GI:e1185956:g2635567]


[LN:BSUB0016] [AC:Z99119:AL009126] [PN:menaquinone-specific isochorismate


synthase] [GN:menF] [FN:menaquinone biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:5.4.99.6] [DE:Bacillus subtilis complete genome


(section 16 of 21):from 2997771 to 3213410.] [NT:alternate gene name:icsM,


entC] [SP:P23973] [LE:153612] [RE:155027] [DI:complement] >gp:[GI:g2293145]


[LN:AF008220] [AC:AF008220] [PN:isochorismate synthase] [GN:menF]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:25400] [RE:26815] [DI:direct] >gp:[GI:g1185288]


[LN:BACMENAQOP] [AC:M74538:M74182:M74183] [PN:isochorismate synthase]


[GN:menF] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain RB1) DNA]


[DB:genpept-bct2] [DE:Bacillus subtilis menaquinone operon:menF, menD, menB


and menE genes, complete cds.] [NT:based on similarity to E. coli EntC, A.


hydrophila] [LE:143] [RE:1558] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_2848308_c3_607
2012
5784
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_289802_f2_227
2013
5785
189
62
89
0.0019










Description


pir:[LN:F22845] [AC:F22845] [PN:hypothetical protein 6] [OR:mitochondrion


Trypanosoma brucei] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_2922260_c3_574
2014
5786
384
127
174
2.7e−13










Description


pir:[LN:D69844] [AC:D69844] [PN:hypothetical protein yjbL] [GN:yjbL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183179:g2633513] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:41690] [RE:42058] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_29335888_c3_562
2015
5787
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_29570302_f1_24
2016
5788
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_31281253_c3_538
2017
5789
1221
406
1513
3.5e−155










Description


sp:[LN:OAT_BACSU] [AC:P38021] [GN:ROCD] [OR:BACILLUS SUBTILIS] [EC:2.6.1.13]


[DE:AMINOTRANSFERASE)] [SP:P38021] [DB:swissprot] >pir:[LN:S55793]


[AC:S55793:S49267:B53370:H69693] [PN:ornithine--oxo-acid transaminase,


rocD:ornithine aminotransferase:ornithine--oxo-acid aminotransferase]


[GN:rocD] [CL:ornithine--oxo-acid aminotransferase] [OR:Bacillus subtilis]


[EC:2.6.1.13] [DB:pir2] >gp:[GI:d1011955:g1064807] [LN:BACGNTZA] [AC:D78193]


[PN:orthinine aminotransferase] [GN:rocD] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis 36 kb sequence between gntZ and trnY genes encoding 34 ORFs.]


[LE:25845] [RE:27050] [DI:complement] >gp:[GI:g550311] [LN:BSROCDEF]


[AC:X81802] [PN:ornithine< aminotransferase] [GN:rocD] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis rocD, rocE and rocF genes.]


[SP:P38021] [LE:241] [RE:1446] [DI:direct] >gp:[GI:e1184760:g2636581]


[LN:BSUB0021] [AC:Z99124:AL009126] [PN:ornithine aminotransferase] [GN:rocD]


[FN:arginine and ornithine utilization] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.6.1.13] [DE:Bacillus subtilis complete genome


(section 21 of 21):from 3999281 to 4214814.] [SP:P38021] [LE:144229]


[RE:145434] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_31300807_c1_436
2018
5790
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_31525260_c3_579
2019
5791
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_32062875_c1_439
2020
5792
291
96
333
3.8e−30










Description


gp:[GI:g1731452] [LN:SAU38429] [AC:U38429] [PN:recombination protein]


[GN:pre] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus chloramphenicol resistance plasmid pKH7, complete sequence.] [LE:2074]


[RE:3285] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_32067937_f2_247
2021
5793
1365
454
1790
1.5e−184










Description


gp:[GI:g2792490] [LN:AF041467] [AC:AF041467] [PN:coenzyme A disulfide


reductase] [FN:pyridine nucleotide disulfide oxidoreductase]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


coenzyme A disulfide reductase gene, complete cds.] [NT:CoADR; flavoenzyme


(FAD); single catalytic cysteine] [LE:66] [RE:1382] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_32132183_c1_455
2022
5794
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_32457312_c2_501
2023
5795
495
164
233
1.5e−19










Description


gp:[GI:e303881:g1850807] [LN:CPCPEAA] [AC:X71844] [PN:putative transposase]


[OR:Clostridium perfringens] [DB:genpept-bct1] [DE:C. perfringens uapC, cpe,


and nadC genes.] [LE:2477] [RE:2932] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_32635937_c1_429
2024
5796
1503
500
2239
4.1e−232










Description


gp:[GI:e1301684:g3256223] [LN:SAY14370] [AC:Y14370]


[PN:UDP-N-acetylmuramyl-tripeptide synthetase] [GN:murE] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus RF3, murE, ypfP genes.]


[LE:3244] [RE:4722] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_33364067_c1_431
2025
5797
1782
593
542
2.7e−52










Description


gp:[GI:g2109443] [LN:SPDNAARG] [AC:AF000658] [PN:putative serine protease]


[GN:sphtra] [OR:Streptococcus pneumoniae] [DB genpept-bct2]


[DE:Streptococcus pneumoniae R801 tRNA-Arg gene, partial sequence,


and putative serine protease (sphtra), SPSpoJ (spspoJ), initiator protein


(spdnaa) and beta subunit of DNA polymerase III (spdnan) genes, complete


cds.] [NT:SPHtra] [LE:765] [RE:1958] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_3371067_c2_482
2026
5798
954
317
1033
2.5e−104










Description


pir:[LN:E38447] [AC:E38447:S15234:C69669] [PN:oligopeptide transport


ATP-binding protein oppF:sporulation initiation protein spo0KE]


[GN:spo0KE:oppF] [CL:inner membrane protein malK:ATP-binding cassette


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143608] [LN:BACSPO0K]


[AC:M57689] [PN:sporulation protein] [GN:spo0KE] [OR:Bacillus subtilis]


[SR:B. subtilis (strain JH642) DNA, clones pDR20/21, pJL2/3 and pJL7]


[DB:genpept-bct1] [DE:Bacillus subtilis spo0K operon.] [LE:5152] [RE:6078]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_33710968_f2_124
2027
5799
453
150
742
1.7e−73










Description


gp:[GI:g2267241] [LN:SEU71377] [AC:U71377] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphylococcus epidermidis autolysin AtlE and


putative transcriptional regulator AtlR genes, complete cds.] [NT:ORF3]


[LE:1957] [RE:2379] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_3394540_f2_138
2028
5800
312
103





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34006561_f3_312
2029
5801
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34062930_c1_440
2030
5802
273
90
290
1.4e−25










Description


sp:[LN:PRE3_STAAU] [AC:P03864] [OR:STAPHYLOCOCCUS AUREUS] [DE:PLASMID


RECOMBINATION ENZYME (MOBILIZATION PROTEIN)] [SP:P03864] [DB:swissprot]


>gp:[GI:g151683] [LN:PT1CG] [AC:J01764:J01765] [OR:Plasmid pT181]


[SR:Plasmid pT181 DNA from Staphylococcus aureus] [DB:genpept-bct1]


[DE:Plasmid pT181, complete genome.] [NT:Pre protein (plasmid


recombination)] [LE:2521] [RE:3762] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34073552_c2_509
2031
5803
1545
514
2291
1.3e−237










Description


gp:[GI:e1301683:g3256222] [LN:SAY14370] [AC:Y14370] [PN:peptide chain


release factor 3] [GN:RF3] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus RF3, murE, ypfP genes.] [LE:1435] [RE:3000]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34163562_f3_322
2032
5804
486
161
329
1.0e−29










Description


pir:[LN:D69583] [AC:D69583] [PN:alcohol dehydrogenase, adhB] [GN:adhB]


[CL:alcohol dehydrogenase long-chain alcohol dehydrogenase homology]


[OR:Bacillus subtilis] [EC:1.1.1.1] [DB:pir2] >gp:[GI:e209890:g2108273]


[LN:BS233DEG] [AC:X92868:X79978] [PN:NAD alcohol dehydrogenase] [GN:adhB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis 23.9 kb fragment from


map position 233 degrees on the chromosome.] [LE:13725] [RE:14861]


[DI:complement] >gp:[GI:e1183926:g2635142] [LN:BSUB0014]


[AC:Z99117:AL009126] [PN:alcohol dehydrogenase] [GN:adhB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21):from 2599451 to 2812870.] [LE:153270] [RE:154406] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34179031_f2_122
2033
5805
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34398505_f3_354
2034
5806
222
73





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_34407888_c3_572
2035
5807
729
242
288
1.9e−37










Description


gp:[GI:g2952027] [LN:BFU88888] [AC:U88888] [PN:MecA homolog] [GN:mecA]


[OR:Bacillus firmus] [DB:genpept-bct2] [DE:Bacillus firmus MecA homolog


(mecA) and cardiolipin synthase (cls) genes, complete cds.] [LE:349]


[RE:1002] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_35158177_c1_408
2036
5808
1407
468
903
1.5e−90










Description


gp:[GI:d1039121:g4514345] [LN:AB013374] [AC:AB013374] [PN:Ykok] [GN:ykok]


[OR:Bacillus halodurans] [SR:Bacillus halodurans (strain:C-125) DNA]


[DB:genpept-bct1] [DE:Bacillus halodurans C-125 mamX, yjdA, ykoK and yvfK


genes, partial and complete cds.] [LE:1793] [RE:3142] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_35937827_c2_505
2037
5809
510
169
343
3.3e−31










Description


pir:[LN:G69846] [AC:G69846] [PN:hypothetical protein yjcG] [GN:yjcG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183205:g2633539] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjcG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:61943] [RE:62458] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_36128387_c3_621
2038
5810
165
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_36134717_c1_401
2039
5811
1647
548
889
4.6e−89










Description


pir:[LN:A53310] [AC:A53310] [PN:pheromone cAD1 binding protein


precursor:TraC] [GN:traC] [CL:dipeptide transport protein] [OR:Enterococcus


faecalis] [DB:pir2] >gp:[GI:g388269] [LN:AD1TRAC] [AC:L19532] [GN:traC]


[OR:Plasmid pAD1] [SR:Plasmid pAD1 DNA] [DB:genpept-bct1] [DE:Plasmid pAD1


(from Enterococcus faecalis strain:DS16) hemolysinbacteriocin (traC) gene,


complete cds, traA and traB genes, 3′ end.] [LE:166] [RE:1797] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_36229625_f3_295
2040
5812
204
67
195
1.6e−15










Description


pir:[LN:B69869] [AC:B69869] [PN:hypothetical protein ykvS] [GN:ykvS]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184971:g2633752] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:ykvS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:52338] [RE:52769] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_36611062_c3_557
2041
5813
420
139
174
2.7e−13










Description


pir:[LN:D69837] [AC:D69837] [PN:hypothetical protein yisL] [GN:yisL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183078:g2633412] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yisL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:153237] [RE:153593] [DI:direct]


>gp:GI:e1173510:g2145377] [LN:BSY09476] [AC:Y09476] [PN:YisL] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis 54 kb genomic DNA fragment.]


[NT:putative] [LE:10463] [RE:10819] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_37777_c1_434
2042
5814
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_3954718_c1_394
2043
5815
3489
1162
1331
6.7e−136










Description


sp:[LN:ADDB_BACSU] [AC:P23477] [GN:ADDB] [OR:BACILLUS SUBTILIS]


[DE:ATP-DEPENDENT NUCLEASE SUBUNIT B] [SP:P23477] [DB:swissprot]


>pir:[LN:A39432] [AC:A39432:S61272:A69583] [PN:ATP-dependent


deoxyribonuclease chain B addB:ATP-dependent exonuclease synthesis protein


AdaB] [GN:addB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142439]


[LN:BACADDAA] [AC:M63489] [PN:ATP-dependent nuclease] [GN:addA] [OR:Bacillus


subtilis] [SR:B. subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


ATP-dependent nuclease (addA) and (addB), and open reading frame 3, partial


cds.] [LE:502] [RE:4002] [DI:direct] >gp:[GI:e1183064:g2633398]


[LN:BSUB0006] [AC:Z99109:AL009126] [PN:ATP-dependent deoxyribonuclease


(subunit B)] [GN:addB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 6 of 21):from 999501 to 1209940.]


[SP:P23477] [LE:136293] [RE:139793] [DI:direct] >gp:[GI:e1364880:g2226191]


[LN:BSY14081] [AC:Y14081] [PN:ATP-dependent nuclease] [GN:addB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 92


degrees:region between comK and addAB.] [NT:TTG start; see ref [3]; In EMBL


entry M63489 this] [LE:18588] [RE:22088] [DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4019193_c1_418
2044
5816
783
260
749
3.2e-74










Description


pir: [LN:G69845] [AC:G69845] [PN:enoyl-[acyl-carrier-protein] reductase


(NADH), yjbW] [GN:yjbW] [CL:enoyl-[acyl-carrier-protein] reductase (NADH):


short-chain alcohol dehydrogenase homology] [OR:Bacillus subtilis]


[EC:1.3.1.9] [DB:pir2] >gp:[GI:e1183192:g2633526] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbW] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [NT:similar to enoyl-acyl-carrier protein


reductase] [LE:52836] [RE:53645] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4070151_c2_472
2045
5817
447
148
165
2.4e-12










Description


gp:[GI:e1173495:g2145362] [LN:BSY09476] [AC:Y09476] [PN:AddA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis 54kb genomic DNA fragment.]


[SP:P23478] [LE:<1] [RE:702] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4080443_c1_409
2046
5818
1854
617
1574
1.2e-161










Description


pir:[LN:A69845] [AC:A69845] [PN:Na+/H+ antiporter homolog yjbQ] [GN:yjbQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183184:g2633518] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [NT:similar to Na+/H+ antiporter] [LE:45437]


[RE:47281] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4088962_c2_508
2047
5819
279
92
76
0.0065










Description


pir:[LN:A70008] [AC:A70008] [PN:hypothetical protein yueH] [GN:yueH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184255:g2635673] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yueH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:64085] [RE:64333] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4094433_f1_72
2048
5820
999
332
1184
2.5e-120










Description


sp:[LN:SYW_BACSU] [AC:P21656] [GN:TRPS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.2]


[DE:(TRPRS)] [SP:P21656] [DB:swissprot] >pir:[LN:YWBS]


[AC:JT0481:A32452:E69726] [PN:tryptophan--tRNA ligase, :tryptophanyl-tRNA


synthetase] [GN:trpS] [CL:tryptophan--tRNA ligase] [OR:Bacillus subtilis]


[EC:6.1.1.2] [DB:pir1] >gp:[GI:g143786] [LN:BACTRPSA] [AC:M24068]


[OR:Bacillus subtilisi] [SR:B. subtilis (strain QB928) DNA, clone pTSQ2]


[DB:genpept-bct1] [DE:B. subtilis trpS gene encoding tryptophanyl-tRNA


synthetase, complete cds.] [NT:tryptophanyl-tRNA synthetase (EC 6.1.1.2)]


[LE:171] [RE:1163] [DI:direct] >gp:[GI:e1183162:g2633496] [LN:BSUB0007]


[AC:Z99110:AL009126] [PN:tryptophanyl-tRNA synthetase] [GN:trpS]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.1.1.2] [DE:Bacillus subtilis


complete genome (section 7 of 21): from 1194391 to 1411140.] [SP:P21656]


[LE:23195] [RE:24187] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_40957_c1_407
2049
5821
858
285
513
3.2e-49










Description


sp:[LN:YJBO_BACSU] [AC:O31613] [GN:YJBO] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 31.5 KD PROTEIN IN MECA-TENA INTERGENIC REGION] [SP:O31613]


[DB:swissprot] >pir:[LN:G69844] [AC:G69844] [PN:conserved hypothetical


protein yjbO] [GN:yjbO] [CL:conserved hypothetical protein H10176]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183182:g2633516] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbO] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [NT:similar to hypothetical proteins] [SP:O31613]


[LE:43604] [RE:44455] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4100393_f3_379
2050
5822
1215
404
1458
2.3e-149










Description


pir:[LN:B69589] [AC:B69589] [PN:argininosuccinate synthase argG] [GN:argG]


[CL:argininosuccinate synthase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184194:g2635410] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:argininosuccinate synthase] [GN:argG] [FN:arginine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.4.5] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [LE:217075]


[RE:218286] [DI:complement] >gp:[GI:e1185818:g2635429] [LN:BSUB0016]


[AC:Z99119:AL009126] [PN:argininosuccinate synthase] [GN:argG] [FN:arginine


biosynthesis] [OR:Bacillus subtilis] (DB:genpept-bct1] [EC:6.3.4.5]


[DE:Bacillus subtilis complete genome (section 16 of 21): from 2997771 to


3213410.] [LE:14435] [RE:15646] [DI:complement] >gp:[GI:g2293242]


[LN:AF008220] [AC:AF008220] [PN:arginine succinate synthase] [GN:argG]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:164781] [RE:165992] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4173410_c2_504
2051
5823
792
263
485
3.0e-46










Description


pir:[LN:H69846] [AC:H69846] [PN:hypothetical protein yjcH] [GN:yjcH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183206:g2633540] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjcH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:62495] [RE:63217] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4181312_c2_527
2052
5824
606
201
93
0.010










Description


pir:[LN:A71455] [AC:A71455] [PN:probable acetyltransferase] [GN:PH0296]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030311:g3256685]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:172aa long hypothetical acetyltransferase] [GN:PH0296] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1]


[DE:Pyrococcus horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).]


[NT:similar to PIR:A64491 percent identity:42.029 in] [LE:262066]


[RE:262584] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4335752_f1_4
2053
5825
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4546890_f2_174
2054
5826
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4687518_c2_519
2055
5827
585
194
179
8.0e-14










Description


sp:[LN:COMK_BACSU] [AC:P40396] [GN:COMK] [OR:BACILLUS SUBTILIS]


[DE:COMPETENCE TRANSCRIPTION FACTOR (CTF) (COMPETENCE PROTEIN K)]


[SP:P40396] [DB:swissprot] >pir:[LN:S43611] [AC:S43611:A69604]


[PN:competence transcription factor (CTF) comK] [GN:comK] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1183044:g2633378] [LN:BSUB0006]


[AC:Z99109:AL009126] [PN:competence transcription factor (CTF)] [GN:comK]


[FN:final autoregulatory control switch prior to] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [SP:P40396] [LE:117081] [RE:117659] [DI:direct]


>gp:[GI:g546917] [LN:S70734] [AC:S70734] [GN:comK] [OR:Bacillus subtilis]


[SR:Bacillus subtilis E26] [DB:genpept-bct1] [DE:comK [Bacillus subtilis,


E26, Genomic, 3 genes, 1947 nt] .] [NT:This sequence comes from FIG. 3.]


[LE:900] [RE:1478] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4688750_f3_283
2056
5828
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4726010_c1_413
2057
5829
2304
767
1777
3.7e-183










Description


gp:[GI:g1196907] [LN:STMDRRC] [AC:L76359] [PN:daunorubicin resistance


protein] [GN:drrC] [OR:Streptomyces peucetius] [DB:genpept-bct1]


[DE:Streptomyces peucetius daunorubicin resistance protein (drrC)


gene, complete cds.] [LE:991] [RE:3285] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4781275_f2_194
2058
5830
249
82










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4812675_c1_412
2059
5831
321
106
273
3.1e-23










Description


Sp:[LN:G6PD_BACSU] [AC:P54547] [GN:ZWF] [OR:BACILLUS SUBTILIS] [EC:1.1.1.49]


[DE:PROTEIN 11] (VEG11)] [SP:P54547] [DB:swissprot] >pir:[LN:B69964]


[AC:B69964] [PN:probable glucose-6-phosphate 1-dehydrogenase, yqjJ]


[GN:yqjJ] [CL:glucose-6-phosphate dehydrogenase] [OR:Bacillus subtilis]


[EC:1.1.1.49] [DB:pir2] >gp:[GI:d1013296:g1303961] [LN:BACJHG42]


[AC:D84432:D82370] [PN:YqjJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:239025] [RE:240494]


[DI:complement] >gp:[GI:e1185654:g2634820] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to glucose-6-phosphate 1-dehydrogenase)


[SP:P54547] [LE:83125] [RE:84594] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_48587_f3_381
2060
5832
1062
353
729
4.2e-72










Description


sp:[LN:GLPQ_BACSU] [AC:P37965] [GN:GLPQ] [OR:BACILLUS SUBTILIS]


[EC:3.1.4.46] [DE:(GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE)] [SP:P37965]


[DB:swissprot] >pir:[LN:I40418] [AC:I40418:E69634:S37251]


[PN:glycerophosphoryl diester phosphodiesterase glpQ] [GN:glpQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1034076:g3599635] [LN:AB006424]


[AC:AB006424] [GN:ybeD] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23 degree.] [LE:36004] [RE:36885] [DI:complement]


>gp:[GI:g403373] [LN:BSGLPTQ] [AC:Z26522] [PN:glycerophosphoryl diester


phosphodiesterase] [GN:glpQ] [FN:hydrolysis of deacylated phospholipids]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis glpT and glpQ genes


for glycerol 3-phosphate permeaseand glycerophosphoryl diester


phosphodiesterase.] [SP:P37965] [LE:1748] [RE:2629] [DI:direct]


>gp:[GI:e1182165:g2632499] [LN:BSUB0002] [AC:Z99105:AL009126]


[PN:glycerophosphoryl diester phosphodiesterase] [GN:glpQ] [FN:hydrolysis of


deacylated phospholipids] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:3.1.4.46] [DE:Bacillus subtilis complete genome (section 2 of 21): from


194651 to 415810.] [NT:alternate gene name:ybeD] [SP:P37965] [LE:38353]


[RE:39234] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4882133_c1_435
2061
5833
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4882806_c2_524
2062
5834
522
173
399
3.9e-37










Description


pir:[LN:D69838] [AC:D69838] [PN:conserved hypothetical protein yisU]


[GN:yisU] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183088:g2633422]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yisU] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:165981] [RE:166643] [DI:complement] >gp:[GI:e1173520:g2145387]


[LN:BSY09476] [AC:Y09476] [PN:YisU] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54kb genomic DNA fragment.] [NT:putative] [LE:23207]


[RE:23869] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_4961000_f1_6
2063
5835
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_5085003_f1_118
2064
5836
1455
484
1439
2.4e-147










Description


pir:[LN:C69589] [AC:C69589] [PN:argininosuccinate lyase argH] [GN:argH]


[CL:argininosuccinate lyase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184193:g2635409] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:argininosuccinate lyase] [GN:argH] [FN:arginine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.3.2.1] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [LE:215693]


[RE:217078] [DI:complement] >gp:[GI:e1185817:g2635428] [LN:BSUB0016]


[AC:Z99119:AL009126] [PN:argininosuccinate lyase] [GN:argH] [FN:arginine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.3.2.1]


[DE:Bacillus subtilis complete genome (section 16 of 21): from 2997771 to


3213410.] [LE:13053] [RE:14438] [DI:complement] >gp:[GI:g2293243]


[LN:AF008220] [AC:AF008220] [PN:arginine succinate lyase] [GN:argH]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:165989] [RE:167374] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_5115927_c2_528
2065
5837
1680
559
340
1.3e-59










Description


pir:[LN:S76520] [AC:S76520] [PN:hypothetical protein] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1011017:g1001635] [LN:SYCSLRD] [AC:D64002:AB001339]


[PN:2-succinyl-6-hydroxy-2,] [GN:menD] [OR:Synechocystis sp.]


[SR:Synechocystis sp. (strain:PCC6803) DNA] [DB:genpept-bct1]


[DE:Synechocystis sp. PCC6803 complete genome, 21/27, 2644795-2755702.]


[NT:ORF_ID:s110603] [LE:25321] [RE:27108] DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_5165711_f3_336
2066
5838
447
148
338
1.1e-30










Description


pir:[LN:A69844] [AC:A69844] [PN:hypothetical protein yjbI] [GN:yjbI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183176:g2633510] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjbI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:39591] [RE:39989] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_5250258_c1_403
2067
5839
1839
612
1741
2.4e-179










Description


gp:[GI:d1014255:g1651216] [LN:D88209] [AC:D88209] [PN:Pz-peptidase]


[OR:Bacillus licheniformis] [SR:Bacillus licheniformis (strain:N22) DNA]


[DB:genpept-bct1] [DE:Bacillus licheniformis DNA for Pz-peptidase, complete


cds.] [LE:238] [RE:2124] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_579441_c1_386
2068
5840
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_580307_f2_246
2069
5841
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_6057943_c2_517
2070
5842
999
332
990
9.2e-100










Description


pir:[LN:G69830] [AC:G69830] [PN:lipoate-protein ligase homolog yhfJ]


[GN:yhfJ] [CL:lipoate-protein ligase] [OR:Bacillus subtilis] [DB:pir2] 


>gp:[GI:e1183027:g2633361] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhfJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:similar to


lipoate-protein ligase] [LE:99131] [RE:100126] [DI:direct]


>gp:[GI:e325016:g2226243] [LN:BSY14083] [AC:Y14083] [PN:hypothetical


protein] [GN:yhfJ] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 76–78 degrees: between glyB-aprE.]


[NT:Similarity to several lipoate-protein ligases] [LE:18990] [RE:19985]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_6688757_f2_123
2071
5843
507
168
823
4.6e-82










Description


gp:[GI:g2267240] [LN:SEU71377] [AC:U71377] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphylococcus epidermidis autolysin AtlE and


putative transcriptional regulator AtlR genes, complete cds.] [NT:ORF2]


[LE:913] [RE:1383] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_6921877_c1_410
2072
5844
219
72
192
2.3e-14










Description


sp:[LN:G6PD_BACSU] [AC:P54547] [GN:ZWF] [OR:BACILLUS SUBTILIS] [EC:1.1.1.49]


[DE:PROTEIN 11) (VEG11)] [SP:P54547] [DB:swissprot] >pir:[LN:B69964]


[AC:B69964] [PN:probable glucose-6-phosphate 1-dehydrogenase, yqjJ]


[GN:yqjJ] [CL:glucose-6-phosphate dehydrogenase] [OR:Bacillus subtilis]


[EC:1.1.1.49] [DB:pir2] >gp:[GI:d1013296:g1303961] [LN:BACJH642]


[AC:D84432:D82370] [PN:YqjJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:239025] [RE:240494]


[DI:complement] >gp:[GI:e1185654:g2634820] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to glucose-6-phosphate 1-dehydrogenase]


[SP:P54547] [LE:83125] [RE:84594] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7032752_f3_268
2073
5845
795
264
1335
2.5e-136










Description


gp:[GI:g2267239] [LN:SEU71377] [AC:U71377] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphylococcus epidermidis autolysin AtlE and


putative transcriptional regulator AtlR genes, complete cds.] [NT:ORF1]


[LE:<1] [RE:865] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7081712_f1_27
2074
5846
234
77
84
0.00093










Description


pir:[LN:H69835] [AC:H69835] [PN:hypothetical protein yhzC] [GN:yhzC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183043:g2633377] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhzC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:116555] [RE:116788] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7145260_f3_337
2075
5847
243
80










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7228438_c2_471
2076
5848
3231
1076
1793
7.4e-185










Description


sp:[LN:ADDA_BACSU] [AC:P23478] [GN:ADDA] [OR:BACILLUS SUBTILIS]


[DE:ATP-DEPENDENT NUCLEASE SUBUNIT A] [SP:P23478] [DB:swissprot]


>pir:[LN:B39432] [AC:B39432:H69582] [PN:ATP-dependent deoxyribonuclease


chain A addA:ATP-dependent exonuclease synthesis protein AddA] [GN:addA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142440] [LN:BACADDAA] [AC:M63489]


[PN:ATP-dependent nuclease] [GN:addB] [OR:Bacillus subtilis] [SR:B. subtilis


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis ATP-dependent nuclease (addA)


and (addB), and open reading frame 3, partial cds.] [LE:3988] [RE:7687]


[DI:direct] >gp:[GI:e1183065:g2633399] [LN:BSUB0006] [AC:Z99109:AL009126]


[PN:ATP-dependent deoxyribonuclease (subunit A)] [GN:addA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:alternate gene name:recE5] [SP:P23478]


[LE:139780] [RE:143478] [DI:direct] >gp:[GI:e1364881:g2226192] [LN:BSY14081]


[AC:Y14081] [PN:ATP-dependent nuclease] [GN:addA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 92 degrees:


region between comK and addAB.] [NT:see ref [3]; In EMBL entry M63489 this


gene is] [LE:22075] [RE:25773] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7241300_c2_502
2077
5849
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_7308375_c3_567
2078
5850
942
313
791
1.1e-78










Description


pir:[LN:H69668] [AC:H69668:S15231:B38447] [PN:oligopeptide transport system


permease protein oppB:sporulation initiation protein spo0KB] [GN:oppB:spo0KB]


[CL:oligopeptide permease protein oppB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183164:g2633498] [LN:BSUB0007] [AC:Z99110:AL009126]


[PN:oligopeptide ABC transporter (permease)] [GN:oppB] [FN:required for


initiation of sporulation,] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 7 of 21): from 1194391 to


1411140.] [NT:alternate gene name:spo0KB] [LE:26676] [RE:27611] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_782816_c1_396
2079
5851
1857
618
776
3.7e-116










Description


pir:[LN:C69975] [AC:C69975] [PN:acyltransferase homolog yrhL] [GN:yrhL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1934616] [LN:BSU93874] [AC:U93874]


[PN:hypothetical protein YrhL] [GN:yrhL] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis cysteine synthase (yrhA),


cystathioninegamma-lyase (yrhB), YrhC (yrhC), YrhD (yrhD), formate


dehydrogenase chain A (yrhE), YrhF (yrhF), formate dehydrogenase (yrhG),


YrhH (yrhH), regulatory protein (yrhI), cytochrome P450 102 (yrhJ),


YrhK (yrhK), hypothetical protein YrhL (yrhL), putative anti-SigV


factor (yrhM), RNA polymerase sigma factor SigV (sigV) and YrhO (yrhO) genes,


complete cds, and YrhP (yrhP) gene, partial cds.] [NT:similar to Haemophilus


influenzae hypothetical] [LE:13904] [RE:15808] [DI:complement]


>gp:[GI:e1183944:g2635160] [LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrhL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 14 of 21): from 2599451 to 2812870.] [NT:similar to


acyltransferase] [LE:171138] [RE:173042] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_813412_c1_411
2080
5852
156
51
191
3.0e-14










Description


sp:[LN:G6PD_BACSU] [AC:P54547] [GN:ZWF] [OR:BACILLUS SUBTILIS] [EC:1.1.1.49]


[DE:PROTEIN 11) (VEG11)] [SP:P54547] [DB:swissprot] >pir:[LN:B69964]


[AC:B69964] [PN:probable glucose-6-phosphate 1-dehydrogenase, yqjJ]


[GN:yqjJ] [CL:glucose-6-phosphate dehydrogenase] [OR:Bacillus subtilis]


[EC:1.1.1.49] [DB:pir2] >gp:[GI:d1013296:g1303961] [LN:BACJHG42]


[AC:D84432:D82370] [PN:YqjJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642 (trpC2 PheA1)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:239025] [RE:240494]


[DI:complement] >gp:[GI:e1185654:g2634820] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqjJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:similar to glucose-6-phosphate 1-dehydrogenase]


[SP:P54547] [LE:83125] [RE:84594] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_859838_f3_357
2081
5853
384
127










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_978436_f2_126
2082
5854
1188
395
867
9.9e-87










Description


sp:[LN:PATA_BACSU] [AC:P16524] [GN:PATA:UAT] [OR:BACILLUS SUBTILIS]


[EC:2.6.1.—] [DE:PUTATIVE AMINOTRANSFERASE A,] [SP:P16524] [DB:swissprot]


>gp:[GI:e1181905:g2632221] [LN:BS16829KB] [AC:AJ222587] [PN:PatA protein]


[GN:patA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


29kB DNA fragment from ykwC gene to cse15 gene.] [NT:hisC homologue]


[SP:P16524] [LE:6213] [RE:7391] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_985887_c3_570
2083
5855
435
144
570
2.9e-55










Description


pir:[LN:D69843] [AC:D69843] [PN:conserved hypothetical protein yjbD]


[GN:yjbD] [CL:hypothetical protein yjbD] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183170:g2633504] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:yjbD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21): from 1194391 to 1411140.] [NT:similar to


hypothetical proteins] [LE:32779] [RE:33174] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000991_9927077_f3_378
2084
5856
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_10008513_c3_117
2085
5857
2667
888
3361
0.0










Description


pir:[LN:SYBSVS] [AC:A26738] [PN:valine--tRNA ligase, :valyl-tRNA synthetase]


[GN:valS] [CL:valine--tRNA ligase] [OR:Bacillus stearothermophilus]


[EC:6.1.1.9] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_10720877_c1_78
2086
5858
1329
442
1343
3.6e-137










Description


pir:[LN:F69723] [AC:F69723] [PN:trigger factor (prolyl isomerase) tig]


[GN:tig] [CL:trigger factor] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184072:g2635288] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:trigger


factor (prolyl isomerase)] [GN:tig] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131 to


3013540.] [NT:alternate gene name:yzzH] [SP:P80698] [LE:90286] [RE:91560]


[DI:complement] >gp:[GI:e1165373:g1770074] [LN:BSZ75208] [AC:Z75208]


[PN:trigger factor] [GN:tig] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic sequence 89009bp.] [NT:homology to trigger factor of


Haemophilus] [SP:P80698] [LE:78347] [RE:79621] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_11954500_f3_71
2087
5859
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_1211562_c2_94
2088
5860
1269
422
1518
1.0e-155










Description


gp:[GI:e221213:g1296452] [LN:BSCLPXGEN] [AC:X95306] [PN:ClpX protein]


[GN:clpX] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis clpX


gene.] [NT:ATP-dependent protease] [SP:P50866] [LE:168] [RE:1430]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_14725300_c3_108
2089
5861
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_15820252_c1_81
2090
5862
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_16835900_c2_104
2091
5863
147
48
74
0.011










Description


gp:[GI:g1123053] [LN:CELF59A6] [AC:U41994] [GN:F59A6.2] [OR:Caenorhabditis


elegans] [SR:Caenorhabditis elegans strain=Bristol N2] [DB:genpept-invl]


[DE:Caenorhabditis elegans cosmid F59A6.] [LE:19719:20072] [RE:19904:20242]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_188388_c3_122
2092
5864
579
192
220
3.6e-18










Description


sp:[LN:MREC_BACSU] [AC:Q01466] [GN:MREC] [OR:BACILLUS SUBTILIS] [DE:ROD


SHAPE-DETERMINING PROTEIN MREC] [SP:Q01466] [DB:swissprot] >pir:[LN:JC4595]


[AC:JC4595] [PN:cell shape determinant MreC:protease secretion stimulating


protein, MreC] [GN:mreC] [OR:Bacillus stearothermophilus] [DB:pir2] 


>pir:[LN:C45240] [AC:C45240:D45239:S27518] [PN:cell shape determinant mreC]


[GN:mreC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143213] [LN:BACMREMIN]


[AC:M95582] [GN:mreC] [FN:cell shape determining] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain W168) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis (mreB) gene complete cds, (mreC) gene complete cds, (mreD) gene


complete cds, (minC) gene complete cds, (minD) gene complete cds.]


[NT:putative] [LE:1370] [RE:2242] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_19707767_f1_4
2093
5865
324
107










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_20348160_f1_1
2094
5866
222
73
71
0.022










Description


gp:[GI:g1131474] [LN:PBU42580] [AC:U42580:U17055:U32570] [GN:A130R]


[OR:Paramecium bursaria Chlorella virus 1] [DB:genpept-vrl] [DE:Paramecium


bursaria Chlorella virus 1, complete genome.] [LE:69061] [RE:69378]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_21500253_c3_109
2095
5867
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_21563137_c2_102
2096
5868
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_23444187_f3_62
2097
5869
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_23522567_c2_91
2098
5870
381
126
450
1.5e-42










Description


sp:[LN:RL20_BACSU] [AC:P55873] [GN:RPLT] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L20] [SP:P55873] [DB:swissprot] >pir:[LN:F69696]


[AC:F69696] [PN:ribosomal protein L20 rplT] [GN:rplT] [CL:Escherichia coli


ribosomal protein L20] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184134:g2635350] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:ribosomal


protein L20] [GN:rplT] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 15 of 21): from 2795131 to 3013540.]


[SP:P55873] [LE:156202] [RE:156561] [DI:complement]


>gp:[GI:e1165301:g1770009] [LN:BSZ75208] [AC:Z75208] [PN:ribosomal protein


L20] [GN:rplT] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:homology to rplT of Bacillus


stearothermphilus;] [SP:P55873] [LE:13346] [RE:13705] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_23531628_f2_28
2099
5871
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_23697141_c2_97
2100
5872
930
309
1327
1.8e-135










Description


gp:[GI:g2589181] [LN:SAU89396] [AC:U89396] [PN:porphobilinogen deaminase]


[GN:hemC] [OR:Staphylococcus aureus] [DB:genpept-bct2] [EC:4.3.1.8]


[DE:Staphylococcus aureus hemCDBL gene cluster:porphobilinogendeaminase


(hemC), uroporphyrinogen III synthase (hemD), d-aminolevulinic acid


dehydratase (hemB) and GSA-1-aminotransferase (hemL) genes, complete cds.]


[LE:219] [RE:1145] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_24017052_c2_103
2101
5873
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_24240877_c3_119
2102
5874
522
173










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_24625161_c1_87
2103
5875
141
46
160
8.2e-12










Description


sp:[LN:RADC_STAAU] [AC:P31337] [GN:RADC] [OR:STAPHYLOCOCCUS AUREUS] [DE:DNA


REPAIR PROTEIN RADC HOMOLOG (25 KD PROTEIN) (FRAGMENT)] [SP:P31337]


[DB:swissprot] >gp:[GI:g551992] [LN:STATNIS5] [AC:K02985] [OR:Staphylococcus


aureus] [SR:S. aureus (strain RN450) DNA] [DB:genpept-bct1] [DE:S. aureus


(strain RN450) transposon Tn554 insertion site.] [NT:25 kD protein


(putative); putative] [LE:<1] [RE:>249] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_24897312_c3_112
2104
5876
186
61
255
7.1e-22










Description


sp:[LN:HEM2_STAAU] [AC:P50915] [GN:HEMB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.2.1.24] [DE:SYNTHASE) (ALAD) (ALADH)] [SP:P50915] [DB:swissprot]


>gp:[GI:g2589183] [LN:SAU89396] [AC:U89396] [PN:d-aminolevulinic acid


dehydratase] [GN:hemB] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[EC:4.2.1.24] [DE:Staphylococcus aureus hemCDBL gene cluster:


porphobilinogendeaminase (hemC), uroporphyrinogen III synthase


(hemD), d-aminolevulinic acid dehydratase (hemB) and


GSA-1-aminotransferase (hemL) genes, complete cds.] [LE:1838] [RE:2809]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_25582912_f2_23
2105
5877
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_25596000_c3_111
2106
5878
825
274
460
1.3e-43










Description


sp:[LN:HEMX_BACSU] [AC:P16645] [GN:HEMX] [OR:BACILLUS SUBTILIS] [DE:HEMX


PROTEIN] [SP:P16645] [DB:swissprot] >pir:[LN:B35252] [AC:B35252:C69640]


[PN:hemA concentration negative effector hemx] [GN:hemx] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g143036] [LN:BACHEMAXC] [AC:M57676:M32130]


[GN:hemx] [OR:Bacillus subtilis] [SR:B. subtilis DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis hemAXCDBL gene cluster.] [NT:unidentified gene


product] [LE:1607] [RE:2437] [DI:direct] >gp:[GI:e1184065:g2635281]


[LN:BSUB0015] [AC:Z99118:AL009126] [PN:membrane-bound protein] [GN:hemX]


[FN:negative effector of the concentration of HemA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [SP:P16645] [LE:80898] [RE:81728] [DI:complement]


>gp:[GI:e1165382:g1770082] [LN:BSZ75208] [AC:Z75208] [PN:membrane-bound


protein] [GN:hemx] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:membrane bound protein dispensable for heme]


[SP:P16645] [LE:88179] RE:89009] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_2866255_f3_65
2107
5879
264
87
74
0.045










Description


gp:[GI:e1250026:g2842472] [LN:SPBC20F10] [AC:AL021747] [PN:preg-like


protein.] [GN:SPBC20F10.10] [OR:Schizosaccharomyces pombe] [SR:fission


yeast] [DB:genpept-pln1] [DE:S. pombe chromosome II cosmid c20F10.]


[NT:SPBC20F10.10, len:243, SIMILARITY:Arabidopsis] [LE:20474] [RE:21205]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_31510_f3_55
2108
5880
627
208
435
6.0e-41










Description


sp:[LN:3MGA_HAEIN] [AC:P44321] [GN:TAG:HI0654] [OR:HAEMOPHILUS INFLUENZAE]


[EC:3.2.2.20] [DE:GLYCOSYLASE) (TAG)] [SP:P44321] [DB:swissprot]


>pir:[LN:G64084] [AC:G64084] [PN:3-methyladenine DNA glycosylase, I]


[CL:3-methyladenine DNA glycosylase I] [OR:Haemophilus influenzae]


[EC:3.2.2.—] [DB:pir2] >gp:[GI:g1573653] [LN:U32748] [AC:U32748:L42023]


[PN:DNA-3-methyladenine glycosidase I (tagI) [GN:H10654] [OR:Haemophilus


influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 63 of


163 of the complete genome.] [NT:similar to SP:P05100 GB:J02606 GB:X03845


PID:147920] [LE:6773] [RE:7330] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_33395050_c2_95
2109
5881
618
205
577
5.3e-56










Description


sp:[LN:YSXC_BACSU] [AC:P38424] [GN:YSXC] [OR:BACILLUS SUBTILIS] [DE:(ORFX)]


[SP:P38424] [DB:swissprot] >pir:[LN:I40422] [AC:I40422:C69987:S45102]


[PN:conserved hypothetical protein ysxC] [GN:ysxC] [CL:Bacillus subtilis


conserved hypothetical protein ysxC:translation elongation factor Tu


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g496558] [LN:BSLONLA]


[AC:X76424] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis lon gene


for protease La.] [NT:orfX] [SP:P38424] [LE:2669] [RE:3256] [DI:direct]


>gp:[GI:e1184068:g2635284] [LN:BSUB0015] [AC:Z99118:AL009126] [GN:ysxC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [NT:similar to


hypothetical proteins] [SP:P38424] [LE:83852] [RE:84439] [DI:complement]


>gp:[GI:e1165379:g1770079] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:ysxC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [SP:P38424]


[LE:85468] [RE:86055] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_33517_c1_82
2110
5882
1077
358
258
2.8e-21










Description


pir:[LN:E69834] [AC:E69834] [PN:hypothetical protein yhjN] [GN:yhjN]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183059:g2633393] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhjN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:130891] [RE:132045] [DI:complement]


>gp:[GI:e324987:g2226186] [LN:BSY14081] [AC:Y14081] [PN:hypothetical


protein] [GN:yhjN] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 92 degrees:region between comK and addAB.]


[NT:TTG start; Similarity to a hypothetical protein] [LE:13186] [RE:14340]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_34642092_c1_85
2111
5883
1284
427
907
5.7e-91










Description


sp:[LN:FOLC_BACSU] [AC:Q05865] [GN:FOLC] [OR:BACILLUS SUBTILIS]


[EC:6.3.2.17] [DE:SYNTHETASE) (FPGS)] [SP:Q05865] [DB:swissprot]


>pir:[LN:B40646] [AC:B40646:B33490:D69626] [PN:folyl-polyglutamate


synthetase folC] [GN:folC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g142936] [LN:BACFOLC] [AC:L04520] [PN:folyl-polyglutamate


synthetase] [GN:folC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_strain PY79, strain W168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


valyl tRNA synthetase (valS) gene, 3′ end cds; folyl-polyglutamate synthetase


(folC) gene, complete cds; comCgene, 5′ end cds.] [LE:231] [RE:1523]


[DI:direct] >gp:[GI:e1184057:g2635273] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:folyl-polyglutamate synthetase] [GN:folC] [FN:folate biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.2.17] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [SP:Q05865]


[LE:69443] [RE:70735] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_3914012_c2_98
2112
5884
690
229
710
4.3e-70










Description


gp:[GI:g2589182] [LN:SAU89396] [AC:U89396] [PN:uroporphyrinogen III


synthase] [GN:hemD] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[EC:4.2.1.75] [DE:Staphylococcus aureus hemCDBL gene cluster:


porphobilinogendeaminase (hemC), uroporphyrinogen III synthase


(hemD), d-aminolevulinic acid dehydratase (hemB) and


GSA-1-aminotransferase (hemL) genes, complete cds.] [LE:1167] [RE:1835]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_4080443_c3_113
2113
5885
1296
431
2041
3.9e-211










Description


sp:[LN:GSA_STAAU] [AC:O34092] [GN:HEML] [OR:STAPHYLOCOCCUS AUREUS]


[EC:5.4.3.8] [DE:(GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE) (GSA-AT)]


[SP:O34092] [DB:swissprot] >gp:[GI:g2589184] [LN:SAU89396] [AC:U89396]


[PN:GSA-1-aminotransferase] [GN:hemL] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [EC:5.4.3.8] [DE:Staphylococcus aureus hemCDBL gene


cluster:porphobilinogendeaminase (hemC), uroporphyrinogen III synthase


(hemD), d-aminolevulinic acid dehydratase (hemB) and


GSA-1-aminotransferase (hemL) genes, complete cds.] [LE:2857] [RE:4143]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_439183_f1_14
2114
5886
297
98
208
6.8e-17










Description


gp:[GI:e1165375:g1770076] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:ysoC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:80592]


[RE:81206] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_4729837_c2_92
2115
5887
624
207
416
6.1e-39










Description


sp:[LN:YMAB_BACSU] [AC:P50619] [GN:YMAB] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 23.4 KD PROTEIN IN NRDF-CWLC INTERGENIC REGION] [SP:P50619]


[DB:swissprot] >pir:[LN:D69883] [AC:D69883] [PN:hypothetical protein ymaB]


[GN:ymaB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e218063:g1154634]


[LN:BSNRDYMA] [AC:Z68500] [PN:YmaB] [GN:ymaB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis cwlC, nrdE, nrdF, ymaA and ymaB


genes.] [NT:no similarities, cannot be inactivated] [SP:P50619] [LE:4450]


[RE:5070] [DI:direct] >gp:[GI:e1183399:g2634124] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:ymaB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [LE:90169] [RE:90789] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_4891876_f3_45
2116
5888
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_500052_c3_118
2117
5889
669
222
440
1.8e-41










Description


sp:[LN:RADC_BACSU] [AC:Q02170] [GN:YSXA] [OR:BACILLUS SUBTILIS] [DE:DNA


REPAIR PROTEIN RADC HOMOLOG (ORFB)] [SP:Q02170] [DB:swissprot]


>pir:[LN:B45239] [AC:B45239:B45240:I39881:A69987] [PN:DNA repair protein


homolog ysxA] [GN:ysxA] [CL:DNA repair protein radc] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g142854] [LN:BACDIVREG] [AC:M96343] [GN:orfB] [OR:Bacillus 


subtilis] [SR:Bacillus subtilis (sub_strain PY79, strain W168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis orfA, orfB, mreB, mreC, mreD, minC,


and minD genes, complete coding regions.] [NT:homologous to E. coli radC gene


product and to] [LE:762] [RE:1457] [DI:direct] >gp:[GI:g143162]


[LN:BACMAFMREB] [AC:L08793] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain W168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis maf gene,


complete cds; orfB, complete cds; mreB gene, 5′ end.] [NT:putative] [LE:1557]


[RE:2252] [DI:direct] >gp:[GI:e1184053:g2635269] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ysxA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to DNA repair protein] [SP:Q02170]


[LE:65971] [RE:66666] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_5268775_c3_105
2118
5890
960
319
138
8.5e-07










Description


pir:[LN:H69986] [AC:H69986 ] [PN:hypothetical protein ysoA] [GN:ysoA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184073:g2635289] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ysoA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:91788] [RE:92720] [DI:complement]


>gp:[GI:e1165372:g1770073] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:ysoA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:77187]


[RE:78119] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_5860827_c3_110
2119
5891
1347
448
1172
4.8e-119










Description


sp:[LN:HEM1_BACSU] [AC:P16618] [GN:HEMA] [OR:BACILLUS SUBTILIS] [EC:1.2.1.—]


[DE:GLUTAMYL-TRNA REDUCTASE, (GLUTR)] [SP:P16618] [DB:swissprot]


>pir:[LN:A35252] [AC:A35252:C69639] [PN:glutamyl-tRNA reductase, hemA:hemA


protein] [GN:hemA] [CL:glutamyl-tRNA reductase] [OR:Bacillus subtilis]


[EC:1.2.1.—] [DB:pir2] >gp:[GI:g143035] [LN:BACHEMAXC] [AC:M57676:M32130]


[PN:NAD(P)H:glutamyl-transfer RNA reductase] [GN:hemA] [OR:Bacillus


subtilis] [SR:B. subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


hemAXCDBL gene cluster.] [NT:The product of this hemA gene is not an]


[LE:232] [RE:1599] [DI:direct] >gp:[GI:e1184066:g2635282] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:glutamyl-tRNA reductase] [GN:hemA] [FN:porphyrin


biosynthesis] [OR:Bacillus subtilis] (DB:genpept-bct1] [EC:1.2.1.—]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131 to


3013540.] [SP:P16618] [LE:81736] [RE:83103] [DI:complement]


>gp:[GI:e1165381:g1770081] [LN:BSZ75208] [AC:Z75208]


[PN:NAD(P)H:glutamyl-transfer RNA reductase] [GN:hemA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:2.3.1.37] [DE:B. subtilis genomic sequence


89009bp.] [NT:NAD(P)H:glutamyl-t-RNA reductase of the C-5 pathway]


[SP:P16618] [LE:86804] [RE:88171] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_6845382_f2_26
2120
5892
219
72
72
0.034










Description


gp:[GI:e1358367:g3979946] [LN:CEY18D10A] [AC:AL034393] [GN:Y18D10A.14]


[OR:Caenorhabditis elegans] [DB genpept-inv1] [DE:Caenorhabditis elegans


cosmid Y18D10A, complete sequence.] [LE:113813:114013:114203]


[RE:113961:114112:114448] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_7050319_c2_90
2121
5893
237
78
226
8.4e-19










Description


sp:[LN:RL35_BACSU] [AC:P55874] [GN:RPMI] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L35] [SP:P55874] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_7283437_c1_89
2122
5894
162
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_806510_c1_86
2123
5895
714
237
189
7.0e-15










Description


sp:[LN:LEP3_BACSU] [AC:P15378] [GN:COMC] [OR:BACILLUS SUBTILIS]


[EC:3.4.99.—] [DE:(LATE COMPETENCE PROTEIN COMC)] [SP:P15378] [DB:swissprot]


>pir:[LN:A33490] [AC:A33490:E40646:F40646:B69602] [PN:type IV prepilin


peptidase, :genetic transformation late competence protein ComC] [GN:comC]


[CL:type IV prepilin peptidase] [OR:Bacillus subtilis] [EC:3.4.99.—]


[DB:pir2] >gp:[GI:g142704] [LN:BACCOMC] [AC:M30805] [PN:late competence


protein] [GN:comC] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain


IS75) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis late competence protein


(comC) gene, complete cds.] [LE:819] [RE:1565] [DI:direct]


>gp:[GI:e1184056:g2635272] [:LN:BSUB0015] [AC:Z99118:AL009126]


[PN:DNA-binding protein] [GN:comC] [FN:required for the processing and


translocation] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 15 of 21): from 2795131 to 3013540.]


[SP:P15378] [LE:68557] [RE:69303] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_820253_f1_15
2124
5896
297
98
206
1.1e-16










Description


gp:[GI:e1165375:g1770076] [LN:BSZ75208] [AC:Z75208] [PN:hypothetical


protein] [GN:ysoC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:unknown function; putative] [LE:80592]


[RE:81206] [DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000992_978562_c1_79
2125
5897
861
286
1261
1.8e-128










Description


sp:[LN:HEM2_STAAU] [AC:P50915] [GN:HEMB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.2.1.24] [DE:SYNTHASE) (ALAD) (ALADH)] [SP:P50915] [DB:swissprot]


>gp:[GI:g2589183] [LN:SAU89396] [AC:U89396] [PN:d-aminolevulinic acid


dehydratase] [GN:hemB] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[EC:4.2.1.24] [DE:Staphylococcus aureus hemCDBL gene cluster:


porphobilinogendeaminase (hemC), uroporphyrinogen III synthase


(hemD), d-aminolevulinic acid dehydratase (hemB) and


GSA-1-aminotransferase (hemL) genes, complete cds.] [LE:1838] [RE:2809]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10266875_c2_761
2126
5898
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10463_c2_803
2127
5899
504
167
315
3.1e-28










Description


sp:[LN:YTXG_BACSU] [AC:P40779] [GN:YTXG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 15.7 KD PROTEIN IN MURC-AROA INTERGENIC REGION (ORF1)]


[SP:P40779] [DB:swissprot] >pir:[LN:D70003] [AC:D70003:S71001] [PN:general


stress protein homolog ytxG] [GN:ytxG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g556015] [LN:BACUNAM] [AC:L31845] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis UDP-N-acetylmuramate-alanine ligase


gene, partial cds, and 3 ORF's.] [NT:ORF1] [LE:1211] [RE:1642] [DI:direct]


>gp:[GI:e1185851:g2635462] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytxG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [NT:alternate


gene name: csb40; similar to general] [SP:P40779] [LE:48897] [RE:49328]


[DI:complement] >gp:[GI:g2293217] [LN:AF008220] [AC:AF008220] [PN:YtxG]


[GN:ytxG] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


rrnB-dnaB genomic region.] [LE:131098] [RE:131529] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10548383_f1_3
2128
5900
237
78










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10564375_f3_510
2129
5901
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1056693_c2_793
2130
5902
1101
366
774
7.1e-77










Description


pir:[LN:B69998] [AC:B69998] [PN:endo-1,4-beta-glucanase homolog ytoP]


[GN:ytoP] [CL:thermophilic aminopeptidase I alpha chain] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185859:g2635470] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytoP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to endo-1,4-beta-glucanase] [LE:56559]


[RE:57632] [DI:complement] >gp:[GI:g2293210] [LN:AF008220] LAC:AF008220]


[PN:YtoP] [GN:ytoP] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [NT:similar to hypothetical protein f356


from E. coli] [LE:122794] [RE:123867] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10588877_f1_52
2131
5903
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10667002_f1_111
2132
5904
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_109430_f3_485
2133
5905
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_10969427_f3_448
2134
5906
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_112525_f3_546
2135
5907
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_116337_f2_251
2136
5908
627
208
199
6.1e-16










Description


gp:[GI:g3043872] [LN:LLU95837] [AC:U95837] [PN:transmembrane protein Tmp3]


[OR:Lactococcus lactis] [DB:genpept-bct2] [DE:Lactococcus lactis


transmembrane protein Tmp3 gene, partial cds.] [NT:PBP1A homolog; identified


as a fusion to a signal] [LE:<1] [RE:588] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_11881325_f3_568
2137
5909
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1203827_c3_893
2138
5910
639
212
475
3.4e-45










Description


sp:[LN:RISA_ACTPL] [AC:P50854] [GN:RIBE:RIBB] [OR:ACTINOBACILLUS


PLEUROPNEUMONIAE] [SR:, HAEMOPHILUS PLEUROPNEUMONIAE] [EC:2.5.1.9]


[DE:RIBOFLAVIN SYNTHASE ALPHA CHAIN,] [SP:P50854] [DB:swissprot]


>gp:[GI:g1173517] [LN:APU27202] [AC:U27202] [PN:riboflavin synthase alpha


subunit] [GN:ribB] [OR:Actinobacillus pleuropneumoniae] [DB:genpept-bct1]


[DE:Actinobacillus pleuropneumoniae riboflavin biosynthesis


operon, riboflavin-specific deaminase (ribG), riboflavin synthase


alphasubunit (ribB), bifunctional GTP


cyclohydraseII/3,4-dihydroxy-2-butanone-4-phosphate synthase (ribA),


and riboflavin synthase beta subunit (ribH) genes, complete cds.]


[NT:lumazine synthase; similar to Bacillus subtilis] [LE:1685] [RE:2332]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1209417_c3_959
2139
5911
1704
567
797
2.6e-79










Description


sp:[LN:PHOR_BACSU] [AC:P23545] [GN:PHOR] [OR:BACILLUS SUBTILIS] [EC:2.7.3.—]


[DE:ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR,] [SP:P23545]


[DB:swissprot] >pir:[LN:A27650] [AC:A27650:G69676] [PN:phosphate response


regulator histidine kinase phoR] [GN:phoR] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g143331] [LN:BACPHORP] [AC:M23549] [PN:alkaline phosphatase


regulatory protein] [GN:phoR] [OR:Bacillus subtilis] [SR:Bacillus subtilis


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis alkaline phosphatase regulatory


protein (phoPgene, 3′ end and phoR gene, complete cds).] [LE:85] [RE:1824]


[DI:direct] >gp:[GI:e1184159:g2635375] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:two-component sensor histidine kinase] [GN:phoR] [FN:involved in


phosphate regulation] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 15 of 21): from 2795131 to 3013540.]


[SP:P23545] [LE:180011] [RE:181750] [DI:complement] >gp:[GI:g2293271]


[LN:AF008220] [AC:AF008220] [PN:signal transduction protein kinase]


[GN:phoR] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


rrnB-dnaB genomic region.] [LE:201317] RE:203056] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_125880_f2_361
2140
5912
309
102










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1284381_c1_652
2141
5913
741
246
297
2.5e-26










Description


sp:[LN:TAL_METJA] [AC:Q58370] [GN:TAL:MJ0960] [OR:METHANOCOCCUS JANNASCHII]


(EC:2.2.1.—] [DE:TRANSALDOLASE-LIKE PROTEIN,] [SP:Q58370] [DB:swissprot]


>pir:[LN:H64419] [AC:H64419] [PN:transaldolase,] [CL:Bacillus subtilis 23K


phosphoprotein orfU] [OR:Methanococcus jannaschii] [EC:2.2.1.2] [DB:pir2]


[MP:REV892437-891784] >gp:[GI:g1591624] [LN:U67539] [AC:U67539:L77117]


[PN:transaldolase] [GN:MJ0960] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 81 of 150 of the


complete genome.] [NT:similar to SP:P19669 PID:853766 GB:AL009126 percent]


[LE:7990] [RE:8643] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_12894378_f2_347
2142
5914
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13001537_f3_444
2143
5915
249
82










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13089052_f3_538
2144
5916
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1352042_c2_777
2145
5917
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13678452_c1_628
2146
5918
1263
420
438
2.9e-41










Description


sp:[LN:ECSB_BACSU] [AC:P55340] [GN:ECSB:PRST] [OR:BACILLUS SUBTILIS]


[DE:PROTEIN ECSB] [SP:P55340] [DB:swissprot] >pir:[LN:G69619] [AC:G69619]


[PN:ABC transporter (membrane protein) ecsB] [GN:ecsB] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e183450:g1177254] [LN:BSECSABCG] [AC:X87807]


[PN:hypothetical EcsB protein] [GN:ecsB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis ecsA, ecsB, and ecsC genes.] [SP:P55340]


[LE:984] [RE:2210] [DI:direct] >gp:[GI:e1183007:g2633341] [LN:BSUB0006]


[AC:Z99109:AL009126] [PN:ABC transporter (membrane protein)] [GN:ecsB]


[FN:regulates both components of the protein] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [NT:alternate gene name: prsT, yhaC] [SP:P55340]


[LE:78149] [RE:79375] [DI:direct] >gp:[GI:e324951:g2226114] [LN:BSY14077]


[AC:Y14077] [PN:Hypothetical protein] [GN:yhaC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subitlis 10.6 Kb chromosomal DNA:glyB-prsA


region.] [NT:Identified as ecsB. Hypothetical integral membrane] [SP:P55340]


[LE:1538] [RE:2764] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13722338_c3_943
2147
5919
507
168
505
2.3e-48










Description


pir:[LN:F69992] [AC:F69992] [PN:thiol peroxidase homolog ytgI] [GN:ytgI]


[CL:thiol peroxidase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185822:g2635433] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytgI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [NT:similar to


thiol peroxidase] [LE:18998] [RE:19501] [DI:complement] >gp:[GI:g2293238]


[LN:AF008220] [AC:AF008220] [PN:YtgI] [GN:ytgI] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to tagD protein from V. cholerae] [LE:160926] [RE:161429]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13723318_c3_945
2148
5920
1149
382
1230
3.4e-125










Description


pir:[LN:JE0388] [AC:JE0388] [PN:alanine dehydrogenase,] [OR:Enterobacter


aerogenes] [EC:1.4.1.1] [DB:pir3] >gp:[GI:d1041279:g4803749] [LN:AB013821]


[AC:AB013821] [PN:alanine dehydrogenase] [GN:aladh] [OR:Enterobacter


aerogenes] [SR:Enterobacter aerogenes DNA] [DB:genpept-bct1] [EC:1.4.1.1]


[DE:Enterobacter aerogenes aladh gene for alanine dehydrogenase, complete


cds.] [LE:174] [RE:1307] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13787912_c3_891
2149
5921
1524
507
118
1.7e-05










Description


pir:[LN:D64924] [AC:D64924] [PN:hypothetical protein b1668] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:g1549279] [LN:ECUG8703] [AC:U68703] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:Escherichia coli K-12 MG1655 genome, ribC-pykF


region.] [NT:hypothetical protein] [LE:4535] [RE:6139] [DI:direct]


>gp:[GI:g1787957] [LN:AE000262] [AC:AE000262:U00096] [PN:orf, hypothetical


protein] [GN:b1668] [FN:orf; Unknown] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 152 of 400 of the


complete genome.] [NT:o534; This 534 aa ORF is 38 pct identical (6 gaps)]


[LE:872] [RE:2476] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13852187_f1_136
2150
5922
186
61
113
4.5e-06










Description


pir:[LN:S77632] [AC:577632:S52761] [PN:probable integrase] [GN:int]


[OR:Staphylococcus aureus phage phi-13] [DB:pir2] >gp:[GI:g758229]


[LN:PHI13INT] [AC:X82312] [PN:integrase] [GN:int] [FN:integration of phi-13


in S. aureus genome] [OR:Bacteriophage phi-13] [DB:genpept-phg]


[DE:Bacteriophage phi-13 integrase gene.] [LE:461] [RE:1498] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_13939027_f3_560
2151
5923
186
61










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14251933_f2_239
2152
5924
663
220
818
1.5e-81










Description


pir:[LN:A37146] [AC:A37146:A44901:S11354:C69699:I39962] [PN:ribosomal


protein S4:ribosomal protein BS4 (rpsD)] [GN:rpsD] [CL:Escherichia coli


ribosomal protein S4] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143467]


[LN:BACRPSD] [AC:M59358:M34718] [PN:ribosomal protein S4] [GN:rpsD]


[OR:Bacillus subtilis] [SR:B. subtilis (strain 168, isolate BR151] DNA]


[DB:genpept-bct1] [DE:B. subtilis ribosomal protein S4 gene, complete cds and


tyrosyl tRNA synthetase (tyrS] gene, 3′ end.] [LE:756] [RE:1358] [DI:direct]


>gp:[GI:e1185839:g2635450] [LN:BSUB0016] [AC:Z99119:AL009126] [PN:ribosomal


protein S4 (BS4)] [GN:rpsD] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 16 of 21): from 2997771 to


3213410.] [SP:P21466] [LE:37035] [RE:37637] [DI:direct] >gp:[GI:g2293319]


[LN:AF008220] [AC:AF008220] [PN:ribosomal protein S4] [GN:rpsD] [OR:Bacillus 


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:142790] [RE:143392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14460877_c3_963
2153
5925
138
45
131
2.8e-08










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14460882_c1_649
2154
5926
177
58
227
6.6e-19










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknownl [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14460932_c1_612
2155
5927
177
58
211
3.3e-17










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14460932_f2_226
2156
5928
168
55
196
1.3e-15










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14656327_c2_751
2157
5929
624
207
799
1.6e-79










Description


gp:[GI:g1916729] [LN:AF134905] [AC:AF134905:U76550] [PN:CadD] [GN:cadD]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pRW001 CadD (cadD) gene, complete cds.] [NT:confers low level cadmium


resistance] [LE:2328] [RE:2957] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14658152_f3_589
2158
5930
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14742937_c2_774
2159
5931
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14877316_f1_64
2160
5932
483
160
407
5.5e-38










Description


sp:[LN:YEBR_ECOLI] [AC:P76270:O07976:O07978] [GN:YEBR] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 20.3 KD PROTEIN IN PRC-PPHA INTERGENIC REGION]


[SP:P76270:O07976:O07978] [DB:swissprot] >pir:[LN:H64944] [AC:H64944]


[PN:probable membrane protein b1832] [CL:hypothetical protein YKL069w]


[OR:Escherichia coli] [DB:pir2] >gp:[GI:d1016364:g1736473] [LN:D90826]


[AC:D90826:AB001340] [GN:YKL069W, YKL340] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #335 (40.9–41.3


min.).] [NT:ORF_ID:o335#13; similar to [SwissProt Accession] [LE:16795]


[RE:17346] [DI:complement] >gp:[GI:d1016369:g1736479] [LN:D90827]


[AC:D90827:AB001340] [GN:YKL069W, YKL340] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #336 (41.2–41.6


min.).] [NT:ORF_ID:o335#13; similar to [SwissProt Accession] [LE:2748]


[RE:3299] [DI:complement] >gp:[GI:g1788136] [LN:AE000277]


[AC:AE000277:U00096] [PN:orf, hypothetical protein] [GN:b1832] [FN:orf;


Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12


MG1655 section 167 of 400 of the complete genome.] [NT:f183; residues 72–127


are 57 pct identical to] [LE:7076] [RE:7627] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_14882928_c3_923
2161
5933
1098
365
1279
2.2e-130










Description


gp:[GI:e220317:g1177684] [LN:SXCCPA] [AC:X95439] [PN:chorismate mutase]


[GN:aroA] [OR:Staphylococcus xylosus] [DB:genpept-bct1] [EC:5.4.99.5]


[DE:S. xylosus aroA, ccpA, acuC and acuA genes.] [LE:<1] [RE:807] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_15650303_c3_882
2162
5934
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_163151_c3_886
2163
5935
1248
415
1800
1.3e-185










Description


sp:[LN:METK_STAAU] [AC:P50307] [GN:METK] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.5.1.6] [DE:ADENOSYLTRANSFERASE) (ADOMET SYNTHETASE)] [SP:P50307]


[DB:swissprot] >gp:[GI:g10203171] [LN:SAU36379] [AC:U36379]


[PN:S-adenosylmethionine synthetase] [FN:catalyses the synthesis of SAM]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus


S-adenosylmethionine synthetase gene, complete cds.] [NT:SAM synthetase]


[LE:212] [RE:1405] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_16533442_c2_738
2164
5936
522
173
546
1.0e-52










Description


gp:[GI:g1381681] [LN:BSU58864] [AC:U58864] [PN:CspR] [GN:cspR] [OR:Bacillus


subtilis] [SR:Bacillus subtilis strain=JH642] [DB:genpept-bct1] [DE:Bacillus


subtilis methylase homolog (cspR) gene, complete cds.] [NT:methylase


homolog] [LE:573] [RE:1046] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_16586012_f2_308
2165
5937
588
195
456
3.5e-43










Description


pir:[LN:E69999] [AC:E69999] [PN:hypothetical protein ytqB] [GN:ytqB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185922:g2635533] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytqB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:122275] [RE:122859] [DI:direct]


>gp:[GI:g2293301] [LN:AF008220] [AC:AF008220] [PN:YtqB] [GN:ytqB]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:57568] [RE:58152] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_165908_f2_353
2166
5938
507
168
182
3.8e-14










Description


sp:[LN:YHGC_BACSU] [AC:P38049] [GN:YHGC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 18.8 KD PROTEIN IN ECSC-PBPF INTERGENIC REGION] [SP:P38049]


[DB:swissprot] >pir:[LN:B40614] [AC:B40614:F69832] [PN:conserved


hypothetical protein yhgC:hypothetical protein X (pbpF 5′ region)] [GN:yhgC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g304160] [LN:BACPBPF] [AC:L10630]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain W168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis penicillin-binding protein (pbpF)


gene, 5′ end.] [NT:product unknown] [LE:247] [RE:747] [DI:complement]


>gp:[GI:e1183012:g2633346] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhgC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:alternate


gene name: yixC; similar to hypothetical] [SP:P38049] [LE:83202] [RE:83702]


[DI:complement] >gp:[GI:e325006:g2226228] [LN:BSY14083] [AC:Y14083]


[PN:Hypothetical protein] [GN:yixC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 76–78 degrees:


between glyB-aprE.] [NT:See Swiss Prot P38049; YIXC_BACSU] [SP:P38049]


[LE:3061] [RE:3561] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_16835053_c2_758
2167
5939
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_16994043_c3_933
2168
5940
1128
375
81
0.0062










Description


pir:[LN:E69106] [AC:E69106] [PN:hypothetical protein MTH1793] [GN:MTH1793]


[OR:Methanobacterium thermoautotrophicum] [DB:pir2] >gp:[GI:g2622925]


[LN:AE000934] [AC:AE000934:AE000666] [PN:unknown] [GN:MTH1793]


[OR:Methanobacterium thermoautotrophicum] [DB:genpept-bct2]


[DE:Methanobacterium thermoautotrophicum from bases 1640298 to


1655421 (section 140 of 148) of the complete genome.] [NT:Function Code:14.00-


Unknown, ; similar to,] [LE:89] [RE:790] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_189437_f1_34
2169
5941
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_191713_c3_904
2170
5942
11091
3696
1884
6.9e-195










Description


gp:[GI:e286140:g4775551] [LN:SACTORF13] [AC:Y09928] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:S. aureus CTORF1365, partial.] [NT:CT0RF1365]


[LE:<1] [RE:>3982] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_19565876_c3_915
2171
5943
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1960937_c3_964
2172
5944
177
58
228
5.1e-19










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_19742842_c2_769
2173
5945
849
282
776
4.4e-77










Description


pir:[LN:C70040] [AC:C70040] [PN:plant-metabolite dehydrogenase homolog


yvgN] [GN:yvgN] [CL:aldehyde reductase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1249784:g2832788] [LN:BS43KBDNA] [AC:AJ223978] [PN:putative


reductase protein, YvgN] [GN:yvgN] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis 42.7kB DNA fragment from yvsA to yvqA.] [LE:646]


[RE:1476] [DI:direct] >gp:[GI:e1186028:g2635853] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvgN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:alternate gene name:yvsB; similar to]


[LE:26261] [RE:27091] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_19770437_c2_830
2174
5946
1332
443
1018
9.9e-103










Description


pir:[LN:A69998] [AC:A69998] [PN:hypothetical protein ytoI] [GN:ytoI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184176:g2635392] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ytoI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:201244] [RE:202563] [DI:complement]


>gp:[GI:g2293258] [LN:AF008220] [AC:AF008220] [PN:YtoI] [GN:ytoI]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similarity with hypothetical protein 3 from]


[LE:180504] [RE:181823] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1991325_f3_469
2175
5947
219
72










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_19922162_c3_857
2176
5948
1161
386
527
1.1e-50










Description


gp:[GI:g3688818] [LN:AF084104] [AC:AF084104] [PN:hypothetical protein]


[OR:Bacillus firmus] [DB:genpept-bct2] [DE:Bacillus firmus AcsA (acsA) gene,


partial cds; SspA (sspA), hypothetical protein, maltose transportor


ATP-binding protein (malK), leucine-rich protein transcriptional regulator


(lrpR), hypothetical proteins, ABC transporter ATP-binding protein


(natC), NatA (natA), NatB (natB), and hypothetical protein genes,


complete cds; and SpoIIIJ (spoIIIJ) gene, partial cds.] [NT:Orf10; similar to


hypothetical protein YheB from] [LE:5845] [RE:6957] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_1992943_f3_561
2177
5949
747
248
104
2.3e-05










Description


gp:[GI:g160225] [LN:PFACSPI] [AC:M18821] [PN:circumsporozoite protein]


[GN:CSP] [OR:Plasmodium yoelii] [SR:Plasmodium yoelii (strain 17X NL) DNA]


[DB:genpept-inv1] [DE:Plasmodium yoelii circumsporozoite protein (CSP) gene,


5′ end.] [NT:precursor] [LE:1] [RE:>420] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_20365892_c1_731
2178
5950
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2051502_f2_250
2179
5951
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_20706557_c3_860
2180
5952
1254
417
592
1.4e-57










Description


pir:[LN:A69819] [AC:A69819] [PN:probable phosphoesterase, yhaO] [GN:yhaO]


[CL:unassigned probable phosphoesterases:phosphoesterase core homology]


[OR:Bacillus subtilis] [EC:3.1.—.—] [DB:pir2] >gp:[GI:e1182993:g2633327]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhaO] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:64822] [RE:66048] [DI:direct] >gp:[GI:e324934:g2226129] [LN:BSY14078]


[AC:Y14078] [PN:Hypothetical protein] [GN:yhaO] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subitlis 8.7 Kb chromosomal DNA:downstream


glyB-prsA region.] [NT:similarity to exonuclease sbcD from Escherichia]


[LE:4292] [RE:5518] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_20834812_f2_339
2181
5953
306
101
86
0.0039










Description


pir:[LN:S77632] [AC:S77632:S52761] [PN:probable integrase] [GN:int]


[OR:Staphylococcus aureus phage phi-13] [DB:pir2] >gp:[GI:g758229]


[LN:PHI13INT] [AC:X82312] [PN:integrase] [GN:int] [FN:integration of phi-13


in S. aureus genome] [OR:Bacteriophage phi-13] [DB:genpept-phg]


[DE:Bacteriophage phi-13 integrase gene.] [LE:461] [RE:1498] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_20901713_c3_939
2182
5954
1707
568
613
8.2e-60










Description


pir:[LN:G70002] [AC:G70002] [PN:hypothetical protein ytwP] [GN:ytwP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185834:g2635445] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytwP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:31035] [RE:32723] [DI:complement]


>gp:[GI:g2293228] [LN:AF008220] [AC:AF008220] [PN:YtwP] [GN:ytwP]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similarity to fcrA protein precursor from] [LE:147704]


[RE:149392] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_20947781_f2_348
2183
5955
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2115812_f2_222
2184
5956
1113
370
843
3.5e-84










Description


pir:[LN:G69869] [AC:G69869] [PN:Xaa-Pro dipeptidase homolog ykvY] [GN:ykvY]


[CL:X-Pro aminopeptidase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184976:g2633757] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvY]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21): from 1394791 to 1603020.] [NT:similar to


Xaa-Pro dipeptidase] [LE:58367] [RE:59458] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2117077_f3_536
2185
5957
366
121
195
1.6e-15










Description


pir:[LN:A70341] [AC:A70341] [PN:conserved hypothetical protein aq_449]


[GN:aq_449] [CL:hypothetical protein MJ1523] [OR:Aquifex aeolicus]


[DB:pir2] >gp:[GI:g2983116] [LN:AE000690] [AC:AE000690:AE000657]


[PN:hypothetical protein] [GN:aq_449] [OR:Aquifex aeolicus]


[DB:genpept-bct2] [DE:Aquifex aeolicus section 22 of 109 of the complete


genome.] [LE:10789] [RE:11163] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2126250_f2_305
2186
5958
210
69










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_21491462_c1_722
2187
5959
1161
386
1188
9.6e-121










Description


sp:[LN:CISZ_BACSU] [AC:P39120:O34435] [GN:CITZ:CITA2] [OR:BACILLUS SUBTILIS]


[EC:4.1.3.7] [DE:CITRATE SYNTHASE II,] [SP:P39120:O34435] [DB:swissprot]


>pir:[LN:G69600] [AC:G69600:I40381] [:PN:citrate synthase II,] [GN:citZ]


[CL:citrate (si)-synthase] [OR:Bacillus subtilis] [EC:4.1.3.—] [DB:pir2]


>gp:[GI:e1184163:g2635379] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:citrate


synthase II] [GN:citZ] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.1.3.7]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131 to


3013540.] [NT:alternate gene name: citA2] [SP:P39120] [LE:185094]


[RE:186212] [DI:complement] >gp:[GI:g2293267] [LN:AF008220] [AC:AF008220]


[PN:citrate synthase subunit II] [GN:citZ] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:196855] [RE:197973] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_21520887_c2_781
2188
5960
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_21522010_f2_331
2189
5961
1725
574
2393
2.0e-248










Description


sp:[LN:PPCK_STAAU] [AC:P51065] [GN:PCKA] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.1.1.49] [DE:PHOSPHOENOLPYRUVATE CARBOXYKINASE [ATP],] [SP:P51065]


[DB:swissprot] >gp:[GI:g1255262] [LN:SAU51133] [AC:U51133]


[PN:phosphoenolpyruvate carboxykinase] [GN:pcka] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus phosphoenolpyruvate


carboxykinase (pcka) gene, complete cds.] [LE:160] [RE:1752] [DI:direct]


>gp:[GI:g860732] [LN:STAPEPCK] [AC:L42943] [PN:phosphoenolpyruvate


carboxykinase] [GN:pckA] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[EC:4.1.1.32] [DE:Staphylococcus aureus (clone KIN50)


phosphoenolpyruvatecarboxykinase (pckA) gene, complete cds.] [NT:PEPCK;


homologue] [LE:409] [RE:2001] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_21523400_f2_356
2190
5962
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_21645967_f3_575
2191
5963
993
330
368
7.5e-34










Description


sp:[LN:PRSA_BACSU] [AC:P24327] [GN:PRSA] [OR:BACILLUS SUBTILIS] [DE:PROTEIN


EXPORT PROTEIN PRSA PRECURSOR] [SP:P24327] [DB:swissprot] >pir:[LN:S15269]


[AC:S15269:I40003:H69682] [PN:post-translocation molecular chaperone


prsA:33K lipoprotein prsA] [GN:prsA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g39782] [LN:BS33KDA] [AC:X57271:S67658] [PN:33kDa lipoprotein]


[GN:prsA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis prsA gene


for a 33kDa lipoprotein.] [SP:P24327] [LE:63] [RE:941] [DI:direct]


>gp:[GI:e1182997:g2633331] [LN:BSUB0006] [AC:Z99109:AL009126] [PN:molecular


chaperonin] [GN:prsA] [FN:essential for the stability of secreted]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 6 of 21): from 999501 to 1209940.] [SP:P24327] [LE:70340]


[RE:71218] [DI:complement] >gp:[GI:e325181:g2226124] [LN:BSY14077]


[AC:Y14077] [PN:33kDa lipoprotein] [GN:prsA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subitlis 10.6 Kb chromosomal DNA:glyB-prsA


region.] [NT:See Swiss Prot P24327] [SP:P24327] [LE:9695] [RE:10573]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2189718_f3_412
2192
5964
1371
456
1309
1.4e-133










Description


sp:[LN:CYCA_ECOLI] [AC:P39312] [GN:CYCA:DAGA] [OR:ESCHERICHIA COLI]


[DE:D-SERINE/D-ALANINE/GLYCINE TRANSPORTER] [SP:P39312] [DB:swissprot]


>pir:[LN:S56433] [AC:S56433:C65232] [PN:d-serine/d-alanine/glycine


transporter] [GN:cycA] [CL:arginine permease] [OR:Escherichia coli]


[DB:pir2] >gp:[GI:g537049] [LN:ECOUW93] [AC:U14003] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:Escherichia coli K-12 chromosomal region from 92.8 to


00.1 minutes.] [NT:ORF_o470] [LE:120696] [RE:122108] [DI:direct]


>gp:[GI:g1790653] [LN:AE000492] [AC:AE000492:U00096] [PN:transport of


D-alanine, D-serine, and glycine] [GN:cycA] [FN:transport; Transport of


small molecules:Amino] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 382 of 400 of the complete genome.]


[NT:o470; 100 pct identical amino acid sequence and] [LE:2436] [RE:3848]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22078331_f3_564
2193
5965
252
83










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22164757_f2_244
2194
5966
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22271932_c1_651
2195
5967
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22277327_c3_968
2196
5968
1371
456
496
2.0e-47










Description


sp:[LN:DNAB_BACSU] [AC:P07908] [GN:DNAB] [OR:BACILLUS SUBTILIS]


[DE:REPLICATION INITIATION AND MEMBRANE ATTACHMENT PROTEIN] [SP:P07908]


[DB:swissprot] >pir:[LN:B26580] [AC:B26580:A24720:A69617] [PN:chromosome


replication initiation/membrane attachment protein dnaB:dnaB protein]


[GN:dnaB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142863] [LN:BACDNAB]


[AC:M15183] [PN:replication initiation protein] [GN:dnaB] [OR:Bacillus 


subtilis] [SR:Bacillus subtilis (sub_strain PY79, strain W168) DNA]


[DB:genpept-bct1] [DE:B. subtilis dnaB gene, encoding the replication


initiation and membrane attachment protein, complete cds, clone pdnaB12.]


[NT:The part of the protein encoded by 634–693 binds to] [LE:397] [RE:1815]


[DI:direct] >gp:[GI:e1184148:g2635364] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:membrane attachment protein] [GN:dnaB] [FN:initiation of chromosome


replication (DNA) [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 15 of 21): from 2795131 to 3013540.]


[LE:168092] [RE:169510] [DI:complement] >gp:[GI:e1165285:g1769995]


[LN:BSZ75208] [AC:Z75208] [PN:replication initiation protein] [GN:dnaB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic sequence


89009bp.] [NT:the part of the protein encoded by 634–693 binds to]


[SP:P07908] [LE:397] [RE:1815] [DI:direct] >gp:[GI:g2293280] [LN:AF008220]


[AC:AF008220] [PN:DnaB] [GN:dnaB] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [LE:213557] [RE:214975]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22391432_f3_562
2197
5969
525
174
288
2.3e-25










Description


pir:[LN:S77632] [AC:S77632:S52761] [PN:probable integrase] [GN:int]


[OR:Staphylococcus aureus phage phi-13] [DB:pir2] >gp:[GI:g758229]


[LN:PHI13INT] [AC:X82312] [PN:integrase] [GN:int] [FN:integration of phi-13


in S. aureus genome] [OR:Bacteriophage phi-13] [DB:genpept-phg]


[DE:Bacteriophage phi-13 integrase gene.] [LE:461] [RE:1498] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22459692_f1_125
2198
5970
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_22664125_c2_832
2199
5971
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23438837_f3_600
2200
5972
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23468812_f1_141
2201
5973
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23485443_c1_709
2202
5974
1239
412
931
1.6e-93










Description


sp:[LN:THII_BACSU] [AC:O34595] [GN:THII] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


THIAMIN BIOSYNTHESIS PROTEIN THII] [SP:O34595] [DB:swissprot]


>pir:[LN:E69988] [AC:E69988] [PN:conserved hypothetical protein ytbJ]


[GN:ytbJ] [CL:Mycoplasma genitalium hypothetical protein MG372]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185831:g2635442] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytbJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to hypothetical proteins] [SP:O34595]


[LE:27183] [RE:28259] [DI:complement] >gp:[GI:g2293230] [LN:AF008220]


[AC:AF008220] [PN:YtbJ] [GN:ytbJ] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similar to hypothetical


protein MG372 from M.] [LE:152168] [RE:153244] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23489090_c2_835
2203
5975
1038
345
1033
2.5e-104










Description


sp:[LN:KGPF_BACSU] [AC:O34529] [GN:PFKA:PFK] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.11] [DE:(PHOSPHOHEXOKINASE)] [SP:O34529] [DB:swissprot]


>pir:[LN:A69675] [AC:A69675] [PN:6-phosphofructokinase pfk] [GN:pfk]


[CL:6-phosphofructokinase:6-phosphofructokinase 1 homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184168:g2635384] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:6-phosphofructokinase] [GN:pfk] [FN:glycolysis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.1.11] [DE:Bacillus subtilis


complete genome (section 15 of 21): from 2795131 to 3013540.] [SP:O34529]


[LE:190531] [RE:191490] [DI:complement] >gp:[GI:g2293264] [LN:AF008220]


[AC:AF008220] [PN:G-phosphofructokinase] [GN:pfk] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:191577] [RE:192536] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23555302_f2_233
2204
5976
387
128
91
0.00083










Description


gp:[GI:e1363147:g4127385] [LN:APR011678] [AC:AJ011678] [PN:immunodominant


protein] [OR:Apple proliferation phytoplasma] [DB:genpept-bct1] [DE:Apple


proliferation phytoplasma immunodominant protein gene, strainAT.] [LE:885]


[RE:1382] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23601713_c3_894
2205
5977
1194
397
1108
2.9e-112










Description


sp:[LN:GCH2_BACAM] [AC:P51695] [GN:RIBA] [OR:BACILLUS AMYLOLIQUEFACIENS]


[EC:3.5.4.25] [DE:PHOSPHATE SYNTHASE (DHBP SYNTHASE)] [SP:P51695]


[DB:swissprot] >gp:[GI:e223994:g1212775] [LN:BARIBGENS] [AC:X95955]


[PN:3,4-dihydroxy-2-butanone 4-phosphate synthase] [GN:ribA] [OR:Bacillus


amyloliquefaciens] [DB:genpept-bct1] [DE:B. amyloliquefaciens ribB, ribG,


ribA, ribH & ribT genes.] [NT:GTP cyclohydrolase II] [SP:P51695] [LE:2411]


[RE:3607] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23603375_f2_219
2206
5978
417
138
139
1.4e-09










Description


sp:[LN:Y577_METJA] [AC:Q57997] [GN:MJ0577] [OR:METHANOCOCCUS JANNASCHII]


[DE:PROTEIN MJ0577] [SP:Q57997] [DB:swissprot] >pir:[LN:A64372] [AC:A64372]


[PN:hypothetical protein homolog MJ0577] [CL:Escherichia coli ybdQ protein]


[OR:Methanococcus jannaschii] [DB:pir2] [MP:FOR512975-513463]


>gp:[GI:g1591284] [LN:U67506] [AC:U67506:L77117] [PN:conserved hypothetical


protein] [GN:MJ0577] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 48 of 150 of the complete genome.]


[NT:similar to SP:P42297 PID:603780 PID:849027] [LE:8204] [RE:8692]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2362587_f2_321
2207
5979
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23651567_c3_961
2208
5980
888
295
387
5.2e-41










Description


gp:[GI:d1025814:g2897751] [LN:AB008520] [AC:AB008520] [GN:mutM] [OR:Thermus


thermophilus] [SR:Thermus thermophilus (strain:HB8) DNA] [DB:genpept-bct1]


[DE:Thermus thermophilus MutM gene, complete cds.] [LE:297] [RE:1100]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23694052_f2_359
2209
5981
603
200
82
0.0040










Description


pir:[LN:E69818] [AC:E69818] [PN:hypothetical protein yhaK] [GN:yhaK]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182998:g2633332] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhaK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] [LE:72018] [RE:72272] [DI:complement]


>gp:[GI:e324957:g2226123] [LN:BSY14077] [AC:Y14077] [PN:Hypothetical


protein] [GN:yhaK] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subitlis 10.6 Kb chromosomal DNA:glyB-prsA region.] [LE:8641] [RE:8895]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23710885_f2_167
2210
5982
147
48
76
0.027










Description


pir:[LN:S72289] [AC:S72289] [PN:ribosomal protein L2] [GN:rp12]


[OR:plastid Plasmodium falciparum] [DB:pir2] >gp:[GI:e220178:g1171595]


[LN:PFCOMPIRB] [AC:X95276] [GN:rp12] [OR:Plasmodium falciparum] [SR:malaria


parasite P. falciparum] [DB:genpept-inv1] [DE:P. falciparum complete gene map


of plastid-like DNA (IR-B).] [LE:2799] [RE:3536] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2380342_c2_741
2211
5983
636
211
463
6.4e-44










Description


pir:[LN:F69824] [AC:F69824] [PN:two-component response regulator [YhcY]


homolog yhcZ] [GN:yhcZ] [CL:regulatory protein comA:response regulator


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182922:g2633256]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhcZ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to 1011250.] [NT:similar to two-component response


regulator [YhcY]] [LE:206441] [RE:207085] [DI:direct]


>gp:[GI:e1182934:g2633268] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhcZ]


[FN:unknown] [OR:Bacillus subtilis] DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:similar to


two-component response regulator [YhcY] [LE:9761] [RE:10405] [DI:direct]


>gp:[GI:e324945:g2226141] [LN:BSY14079] [AC:Y14079] [PN:hypothetical


protein] [GN:yhcZ] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 75 degrees:glpPFKD operon and downstream.]


[NT:similarity to the transcriptional regulator degU] [LE:9409] [RE:10053]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2383253_c1_635
2212
5984
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_23984787_c3_924
2213
5985
1011
336
1404
1.2e-143










Description


sp:[LN:CCPA_STAXY] [AC:Q56194] [GN:CCPA] [OR:STAPHYLOCOCCUS XYLOSUS]


[DE:PROBABLE CATABOLITE CONTROL PROTEIN A] [SP:Q56194] [DB:swissprot]


>gp:[GI:e220318:g1177685] [LN:SXCCPA] [AC:X95439] [GN:ccpA]


[OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:S. xylosus aroA, ccpA, acuC


and acuA genes.] [SP:Q56194] [LE:1305] [RE:2294] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24017890_c2_843
2214
5986
1428
476
1242
1.8e-126










Description


sp:[LN:LYSP_ECOLI] [AC:P25737] [GN:LYSP:CADR] [OR:ESCHERICHIA COLI]


[DE:LYSINE-SPECIFIC PERMEASE] [SP:P25737] [DB:swissprot]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24020250_c1_654
2215
5987
882
293
551
6.5e-52










Description


gp:[GI:e1295630:g3184134] [LN:SSAASPROT] [AC:AJ000007] [PN:AAS surface


protein] [GN:aas] [OR:Staphylococcus saprophyticus] [DB:genpept-bct1]


[DE:Staphylococcus saprophyticus aas gene.] [LE:203] [RE:4594] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24025463_c1_620
2216
5988
2952
983
1357
1.2e-138










Description


gp:[GI:g710421] [LN:SAU21636] [AC:U21636] [PN:unknown] [OR:Staphylococcus


aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus cmp-binding-factor 1


(cbf1) and ORF X genes, complete cds.] [NT:ORF X] [LE:52] [RE:1158]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24226543_c1_704
2217
5989
783
260
365
1.6e-33










Description


pir:[LN:E69827] [AC:E69827] [PN:glycerophosphodiester phosphodiesterase


homolog yhdW] [GN:yhdW] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182963:g2633297] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdW]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:similar to


glycerophosphodiester phosphodiesterase] [LE:37668] [RE:38399]


[DI:complement] >gp:[GI:e1191883:g2226218] [LN:BSY14082] [AC:Y14082]


[PN:hypothetical protein] [GN:yhdW] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 72 to 75 degrees: spoVR to


sspB.] [NT:Similarity to glycerol diester phosphodiesterase] [LE:24316]


[RE:25047] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2426312_f1_103
2218
5990
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24272568_c2_782
2219
5991
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2428950_c3_844
2220
5992
444
147
227
6.6e-19










Description


gp:[GI:g1022725] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp:[GI:g2951621 [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) gene and unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24296925_f3_534
2221
5993
552
183
127
6.2e-08










Description


gp:[GI:e184374:g2104803] [LN:CBDNAPTCG] [AC:X87972] [GN:P-21]


[OR:Clostridium botulinum] [DB:genpept-bct1] [DE:C. botulinum progenitor


toxin complex genes.] [LE:2337] [RE:2882] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24307677_c2_772
2222
5994
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24334563_c2_789
2223
5995
453
150
109
1.5e-05










Description


gp:[GI:e1492342:g5262792] [LN:ATT13K14] [AC:AL080282] [PN:putative protein]


[GN:T13K14.180] [OR:Arabidopsis thaliana] [SR:thale cress] [DB:genpept]


[DE:Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSAproject).]


[NT:similarity to desiccation-related protein,] [LE:67362:67832]


[RE:67502:68491] [DI:directJoin]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24337750_c3_913
2224
5996
852
283
1238
4.8e-126










Description


sp:[LN:DAAA_STAHA] [AC:P54694] [GN:DAT] [OR:STAPHYLOCOCCUS HAEMOLYTICUS]


[EC:2.6.1.21] [DE:TRANSAMINASE)] [SP:P54694] [DB:swissprot] >gp:[GI:g517475]


[LN:SHU12238] [AC:U12238] [PN:D-amino acid transaminase] [GN:dat]


[OR:Staphylococcus haemolyticus] [DB:genpept-bct1] [DE:Staphylococcus


haemolyticus Y176 D-amino acid transaminase (dat) gene, complete cds.]


[LE:216] [RE:1064] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24407577_c1_724
2225
5997
738
245
833
4.0e-83










Description


sp:[LN:PHOP_BACSU] [AC:P13792] [GN:PHOP] [OR:BACILLUS SUBTILIS] [DE:PHOP]


[SP:P13792] [DB:swissprot] >gp:[GI:g40056] [LN:BSPHOPDNA] [AC:X67676]


[GN:phoP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis phoP


gene.] [SP:P13792] [LE:199] [RE:921] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24407765_c1_710
2226
5998
795
264
413
1.3e-38










Description


sp:[LN:YCB9_PSEDE] [AC:P29942] [OR:PSEUDOMONAS DENITRIFICANS]


[DE:HYPOTHETICAL 27.4 KD PROTEIN IN COBO 3′ REGION (ORF9)] [SP:P29942]


[DB:swissprot] >pir:[LN:I38164] [AC:I38164] [PN:hypothetical protein 9]


[OR:Pseudomonas sp.] [DB:pir2] >gp:[GI:g551929] [LN:PSECOBGEN] [AC:M62866]


[OR:Pseudomonas denitrificans] [SR:Pseudomonas denitrificans (strain SC510)


DNA] [DB:genpept-bct1] [DE:P. denitrificans cobN, cobO, cobP, cobQ, cobW, and


ORF6-9 genes, complete cds.] [NT:ORF9] [LE:12364] [RE:13149] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24409803_c1_633
2227
5999
123
40
81
0.019










Description


pir:[LN:S75730] [AC:S75730:S50064] [PN:8-amino-7-oxononanoate


synthase, :7-keto-8-aminopelargonic acid synthetase:protein


slr0917:7-keto-8-aminopelargonic acid synthetase:protein slr0917] [GN:bioF]


[CL:5-aminolevulinate synthase] [OR:Synechocystis sp.] [SR:PCC 6803, , PCC


6803] [SR:PCC 6803,] [EC:2.3.1.47] [DB:pir2] >gp:[GI:d1011116:g1673311]


[LN:SYCSLLE] [AC:D64003:AB001339] [PN:7-keto-8-aminopelargonic acid


synthetase] [GN:bioF] [OR:Synechocystis sp.] [SR:Synechocystis sp.


(strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 22/27, 2755703-2868766.] [NT:ORF_ID:slr0917] [LE:35986]


[RE:37299] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24417252_c3_902
2228
6000
1248
415
1038
7.5e-105










Description


pir:[LN:F70001] [AC:F70001] [PN:multidrug resistance protein homolog yttB]


[GN:yttB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185908:g2635519]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:yttB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21): from 2997771 to 3213410.] [NT:similar to multidrug resistance


protein] [LE:108543] [RE:109736] [DI:complement] >gp:[GI:g2293179]


[LN:AF008220] [AC:AF008220] [PN:YttB] [GN:yttB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to tetracycline resistance protein from] [LE:70691]


[RE:71884] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24428760_f3_509
2229
6001
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24475377_f3_537
2230
6002
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24490702_c1_616
2231
6003
405
134
74
0.011










Description


sp:[LN:Y70A_METJA] [AC:P81311] [GN:MJ0703.1] [OR:METHANOCOCCUS JANNASCRII]


[DE:HYPOTHETICAL PROTEIN MJ0703.1] [SP:P81311] [DB:swissprot]


>gp:[GI:g2826311] [LN:U67517] [AC:U67517:L77117] [PN:M. jannaschii predicted


coding region MJ0703.1] [GN:MJ0703.1] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 59 of 150 of the


complete genome.] [NT:Brute Force ORF; identified by GeneMark; putative]


[LE:94] [RE:402] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24492130_f1_70
2232
6004
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24508552_c3_971
2233
6005
1953
650
2471
1.1e-256










Description


sp:[LN:SYT1_BACSU] [AC:P18255:P06570] [GN:THRS:THRSV] [OR:BACILLUS SUBTILIS]


[EC:6.1.1.3] [DE:(THRRS)] [SP:P18255:P06570] [DB:swissprot] >pir:[LN:YSBST1]


[AC:B37770:E24720:B69723] [PN:threonine--tRNA ligase,, major


(thrS) :threonyl-tRNA synthetase] [GN:thrS:thrSv] [CL:threonine-tRNA


ligase] [OR:Bacillus subtilis] [EC:6.1.1.3] [DB:pir1] [MP:250 (degrees)]


>gp:[GI:g143766] [LN:BACTRNASB] [AC:M36594] [OR:Bacillus subtilis]


[SR:B. subtilis (strain 168) vegetative form DNA] [DB:genpept-bct1]


[DE:B. subtilis threonyl-tRNA synthetase (thrSv) gene, complete cds.]


[NT:(thrSv) (EC 6.1.1.3)] [LE:365] [RE:2296] [DI:direct]


>gp:[GI:e1184144:g2635360] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:threonyl-tRNA synthetase] [GN:thrS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.3] [DE:Bacillus subtilis complete genome


(section 15 of 21): from 2795131 to 3013540.] [SP:P18255] [LE:163202]


[RE:165133] [DI:complement] >gp:[GI:e1165290:g1769999] [LN:BSZ75208]


[AC:Z75208] [PN:threonyl-tRNA-synthetase] [GN:thrS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.3] [DE:B. subtilis genomic sequence 89009bp.]


[NT:thrs (111–180); Major threonyl-tRNA synthetase] [SP:P18255] [LE:4774]


[RE:6705] [DI:direct] >gp:[GI:g2293284] [LN:AF008220] [AC:AF008220]


[PN:threonine tRNA synthetase] [GN:thrS] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:217934] [RE:219865] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24609676_c2_773
2234
6006
471
156
72
0.030










Description


sp:[LN:NULM_DASNO] [AC:021333] [GN:MTND4L:ND4L:NADH4L] [OR:DASYPUS


NOVEMCINCTUS] [SR:,NINE-BANDED ARMADILLO] [EC:1.6.5.3] [DE:NADH-UBIQUINONE


OXIDOREDUCTASE CHAIN 4L,] [SP:O21333] [DB:swissprot]


>gp:[GI:e311022:g2252509] [LN:MTDNCOMGN] [AC:Y11832] [GN:NADH4L]


[OR:Mitochondrion Dasypus novemcinctus] [SR:nine-banded armadillo]


[DB:genpept-mam] [DE:D. novemcinctus complete mitochondrial genome.]


[SP:O21333] [LE:9903] [RE:10199] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24662915_c3_960
2235
6007
2718
905
2572
2.1e-267










Description


sp:[LN:DPO1_BACSU] [AC:034996] [GN:POLA] [OR:BACILLUS SUBTILIS] [EC:2.7.7.7]


[DE:DNA POLYMERASE I, (POL I)] [SP:O34996] [DB:swissprot] >pir:[LN:E69680]


[AC:E69680] [PN:DNA polymerase I polA] [GN:polA] [CL:DNA-directed DNA


polymerase I] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184158:g2635374]


[LN:BSUB0015] [AC:Z99118:AL009126] [PN:DNA polymerase I] [GN:polA]


[FN:replication and DNA repair] [OR:Bacillus subtilis], [DB:genpept-bct1]


[EC:2.7.7.7] [DE:Bacillus subtilis complete genome (section 15 of 21): from


2795131 to 3013540.] [SP:O34996] [LE:177125] [RE:17976711 [DI:complement]


>gp:[GI:g2293272] [LN:AF008220] [AC:AF008220] [PN:DNA-polymerase I]


[GN:polA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


rrnB-dnaB genomic region.] [LE:203300] [RE:205942] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24692338_c3_895
2236
6008
474
157
540
4.5e-52










Description


sp:[LN:RISB_BACAM] [AC:Q44681] [GN:RIBH] [OR:BACILLUS AMYLOLIQUEFACIENS]


[EC:2.5.1.9] [DE:(LUMAZINE SYNTHASE) (RIBOFLAVIN SYNTHASE BETA CHAIN)]


[SP:Q44681] [DB:swissprot] >gp:[GI:e223995:g1212776] [:LN:BARIBGENS]


[AC:X95955] [PN:lumazine synthase (b-subunit)] [GN:ribH] [OR:Bacillus


amyloliquefaciens] [DB:genpept-bct1] [DE:B. amyloliquefaciens ribB, ribG,


nbA, ribH & ribT genes.] [SP:Q44681] [LE:3639] [RE:4103] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24720291_f2_322
2237
6009
498
165










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24726077_c3_965
2238
6010
1026
341
1088
3.8e-110










Description


sp:[LN:G3P2_BACSU] [AC:O34425] [GN:GAPB] [OR:BACILLUS SUBTILIS]


[EC:1.2.1.12] [DE:GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2, (GAPDH)]


[SP:O34425] [DB:swissprot] >pir:[LN:G69628] [AC:G69628]


[PN:glyceraldehyde-3-phosphate dehydrogenase, gapB] [GN:gapB]


[CL:glyceraldehyde-3-phosphate dehydrogenase] [OR:Bacillus subtilis]


[EC:1.2.1.12] [DB:pir2] >gp:[GI:e1184151:g2635367] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:glyceraldehyde-3-phosphate dehydrogenase] [GN:gapB]


[FN:glycolysis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.2.1.12]


[DE:Bacillus subtilis complete genome (section 15 of 21): from 2795131 to


3013540.] [SP:O34425] [LE:170976] [RE:171998] [DI:complement]


>gp:[GI:g2293277] [LN:AF008220] [AC:AF008220]


[PN:glyceraldehyde-3-P-dehydrogenase] [GN:gapB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:211069] [RE:212091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24740701_c3_903
2239
6011
2508
835
3293
0.0










Description


sp:[LN:SYL_BACSU] [AC:P36430:O34465] [GN:LEUS] [OR:BACILLUS SUBTILIS]


[EC:6.1.1.4] [DE:LEUCYL-TRNA SYNTHETASE, (LEUCINE--TRNA LIGASE) (LEURS)]


[SP:P36430:O34465] [:DB:swissprot] >pir:[LN:D69650] [AC:D69650:A41882]


[PN:leucine--tRNA ligase, :leucyl-tRNA synthetase] [GN:leuS]


[CL:leucine--tRNA ligase] [OR:Bacillus subtilis] (EC:6.1.1.4] [DB:pir2]


>gp:[GI:e1185905:g2635516] [LN:BSUB0016] [AC:Z99119:AL009126]


[PN:leucyl-tRNA synthetase] [GN:leuS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.4] [DE:Bacillus subtilis complete genome


(section 16 of 21): from 2997771 to 3213410.] [SP:P36430] [LE:103940]


[RE:106354] [DI:complement] >gp:[GI:g2293181] [LN:AF008220] [AC:AF008220]


[PN:leucine tRNA synthetase] [GN:leuS] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:74073] [RE:76487] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24744077_c2_739
2240
6012
183
60
74
0.011










Description


pir:[LN:B60608] [AC:B60608] [PN:myosin heavy chain] [CL:myosin heavy


chain:myosin motor domain homology] [OR:Schistosoma mansoni] [DB:pir2]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24797177_c1_689
2241
6013
3534
1177
1450
1.7e-148










Description


pir:[LN:C69999] [AC:C69999] [PN:DNA translocase stage III sporulation prot


homolog ytpT] [GN:ytpT] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185853:g2635464] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytpT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [NT:similar to


DNA translocase stage III sporulation] [LE:51038] [RE:53146] [DI:complement]


>gp:[GI:g2293215] [LN:AF008220] [AC:AF008220] [PN:YtpT] [GN:ytpT]


[OR:Bacillus subtilisi] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:strong similarity to FtsK of E. coli and SpoIIIE of]


[LE:127280] [RE:129388] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_24853437_c1_661
2242
6014
831
276
423
1.1e-39










Description


pir:[LN:D69998] [AC:D69998] [PN:lysophospholipase homolog ytpA] [GN:ytpA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185924:g2635535] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytpA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to lysophospholipase] [LE:123973]


[RE:124752] [DI:complement] >gp:[GI:g2293167] [LN:AF008220] [AC:AF008220]


[PN:probable lysophospholipase] [GN:ytpA] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:55675] (RE:56454] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2538252_c2_752
2243
6015
981
326
988
1.5e-99










Description


sp:[LN:HEMZ_BACSU] [AC:P32396] [GN:HEMH:HEMF] [OR:BACILLUS SUBTILIS]


[EC:4.99.1.1] [DE:SYNTHETASE)] [SP:P32396] [DB:swissprot]>pir:[LN:C47045]


[AC:C47045:H69639] [PN:ferrochelatase, hemH] [GN:hemH] [OR:Bacillus


subtilis] [EC:4.99.1.1] [DB:pir2] >gp:[GI:g143044] [LN:BACHEMEHY]


[AC:M97208] [PN:ferrochelatase] [GN:hemH] [FN:iron is inserted into


protoporphyrin IX giving] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain W168) DNA] [DB:genpept-bct1] [EC:4.99.1.1] [DE:Bacillus subtilis


penicillin binding protein 1A (ponA) gene;uroporphyrinogen decarboxylase


(hemE) gene; ferrochelatase (hemH) gene complete cds, (hemY) gene, complete


cds; ORFA, complete cds; ORFB 5′ end.] [LE:3038] [RE:3970] [DI:direct]


>gp:[GI:e1183015:g2633349] [LN:BSUB0006] [AC:Z99109:AL009126]


[PN:ferrochelatase] [GN:hemH] [FN:incorporation of iron into protoporphyrin


IX] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.99.1.1] [DE:Bacillus


subtilis complete genome (section 6 of 21): from 999501 to 1209940.]


[NT:alternate gene name:hemF] [SP:P32396] [LE:87223] [RE:88155] [DI:direct]


>gp:[GI:e1191886:g2226231] [LN:BSY14083] [AC:Y14083] [PN:Ferrochelatase (EC


4.99.1.1); incorporation of] [GN:hemH] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosomal DNA, region 76–78


degrees:between glyB-aprE.] [NT:see Swiss Prot P32396; HEMZ_BACSU.]


[SP:P32396] [LE:7082] [RE:8014] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25398425_c2_824
2244
6016
1167
388
731
2.6e-72










Description


pir:[LN:F69666] [AC:F69666 ] [PN:NifS protein homolog nifZ] [GN:nifZ]


[CL:nitrogen fixation protein nifS] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185832:g2635443] [LN:BSUB0016] [AC:Z99119:AL009126] [PN:NifS


protein homolog] [GN:nifZ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:28263] [RE:29408] [DI:complement]


>gp:[GI:g2293229] [LN:AF008220] [AC:AF008220] [PN:NifS2] [GN:nifS2]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similar to R. sphaeroides nitrogenase stabilizer]


[LE:151019] [RE:152164] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25476375_c2_813
2245
6017
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2548537_c1_703
2246
6018
222
73










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25586632_c2_759
2247
6019
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25665878_c1_683
2248
6020
1665
554
1014
2.6e-102










Description


pir:[LN:G69992] [AC:G69992] [PN:spore cortex protein homolog ytgP] [GN:ytgP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185878:g2635489] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytgP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to spore cortex protein] [LE:74841]


[RE:76475] [DI:complement] >gp:[GI:g2293198] [LN:AF008220] [AC:AF008220]


[PN:YtgP] LGN:ytgP] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [NT:similar to SpoVB protein from B.


subtilis] [LE:103951] [RE:105585] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25667217_c3_962
2249
6021
627
208
405
9.0e-38










Description


sp:[LN:YTAG_BACSU] [AC:034932] [GN:YTAG] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 22.0 KD PROTEIN IN GAPB-MUTM INTERGENIC REGION] [SP:O34932]


[DB:swissprot] >pir:[LN:A69988] [AC:A69988] [PN:conserved hypothetical


protein ytaG] [GN:ytaG] [CL:conserved hypothetical protein YDR19Gc]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184155:g2635371] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ytaG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to hypothetical proteins] [SP:O34932]


[LE:174866] [RE:175459] [DI:complement] >gp:[GI:g2293275] [LN:AF008220]


[AC:AF008220] [PN:YtaG] [GN:ytaG] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similar to hypothetical


protein HI0890 from H.] [LE:207608] [RE:208201] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_25972087_c3_846
2250
6022
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26175952_f3_532
2251
6023
258
85










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26181551_c2_834
2252
6024
948
315
1016
1.6e-102










Description


sp:[LN:ACCA_BACSU] [AC:O34847] [GN:ACCA] [OR:BACILLUS SUBTILIS] [EC:6.4.1.2]


[DE:(EC 6.4.1.2)] [SP:O34847] [DB:swissprot] >pir:[LN:G69580] [AC:G69580]


[PN:acetyl-CoA carboxylase,, carboxyltransferase alpha chain] [GN:accA]


[CL:acetyl-CoA carboxylase, carboxyltransferase alpha chain] [OR:Bacillus


subtilis] [EC:6.4.1.2] [DB:pir2] >gp:[GI:e1184169:g2635385] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:acetyl CoA carboxylase (alpha subunit)] [GN:accA]


[FN:long-chain fatty acid biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [SP:O34847] [LE:191674] [RE:192651] [DI:complement]


>gp:[GI:g2293263] [LN:AF008220] [AC:AF008220] [PN:acetyl-CoA carboxylase


subunit] [GN:accA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [LE:190416] [RE:191393] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26188891_f1_29
2253
6025
210
69
75
0.012










Description


pir:[LN:S58751] [AC:S58751] [PN:NADH dehydrogenase (ubiquinone), chain 3]


[CL:NADH dehydrogenase (ubiquinone) chain 3] [OR:mitochondrion Hansenula


wingei] [EC:1.6.5.3] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26259686_f3_450
2254
6026
1242
413
801
9.8e-80










Description


pir:[LN:A69643] [AC:A69643] [PN:serine proteinase Do, heat-shock protein


htrA] [GN:htrA ] [CL:proteinase hhoB] [OR:Bacillus subtilis] [DB:pir2] 


>gp:[GI:e118l491:g2632011] [LN:BSAJ2571] [AC:A]002571] [PN:YkdA] [GN:ykdA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA


fragment between xlyA and ykoR.] [NT:putative serine protease, heat-shock


inducible;] [LE:10063] [RE:11412] [DI:complement] >gp:[GI:e1183310:g2633644]


[LN:BSUB0007] [AC:Z99110:AL009126] [PN:serine protease Do (heat-shock


protein)] [GN:htrA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus 


subtilis complete genome (section 7 of 21): from 1194391 to 1411140.]


[NT:alternate gene name:ykdA] [LE:163012] [RE:1643611 [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26567062_c1_642
2255
6027
792
263
428
3.3e-40










Description


pir:[LN:A69996] [AC:A69996] [PN:hypothetical protein ytmA] [GN:ytmA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185931:g2635542] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytmA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:132757] [RE:133530] [DI:complement]


>gp:[GI:g2293162] [LN:AF008220] [AC:AF008220] [PN:putative peptidase]


[GN:ytmA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


rrnB-dnaB genomic region.] [LE:46897] [RE:47670] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_26596062_f3_484
2256
6028
1284
427
1198
8.3e-122










Description


gp:[GI:g2293312] [LN:AF008220] [AC:AF008220] [PN:YtfP] [GN:ytfP]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similarity to hypothetical protein f400 from E.]


[LE:102487] [RE:103704] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2741536_c2_805
2257
6029
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2757633_c2_765
2258
6030
1494
497
1275
1.9e-164










Description


sp:[LN:MENE_STAAU] [AC:Q53634] [GN:MENE] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.2.1.26] [DE:(O-SUCCINYLBENZOATE-COA SYNTHASE)] [SP:Q53634]


[DB:swissprot] [>gp:[GI:g1255259] [LN:SAU51132] [AC:U51132]


[PN:o-succinylbenzoic acid (OSB) CoA ligase] [GN:mene] [FN:converts OSB to


OSB-CoA in menaquinone] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus o-succinylbenzoic acid CoA ligase (mene), and


o-succinylbenzoic acid synthetase (menc) genes, complete cds.] [LE:491]


[RE:1969] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2869676_f2_338
2259
6031
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2923202_c1_699
2260
6032
1473
490
1202
3.1e-122










Description


gp:[GI:g1732197] [LN:VFU65014] [AC:U65014] [PN:PTS permease for


N-acetylglucosamine and] [GN:nagE] [OR:Vibrio furnissii] [DB:genpept-bct2]


[DE:Vibrio furnissii PTS permease for N-acetylglucosamine and glucose (nagE)


gene, complete cds.] [NT:PTS enzyme IINag] [LE:115] [RE:1605] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_29562552_f3_555
2261
6033
276
91
281
1.2e-24










Description


pir:[LN:H69993] [AC:H69993] [PN:hypothetical protein ytjA] [GN:ytjA]


[CL:conserved hypothetical protein HI1000] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185941:g2635552] [LN:BSUB001G] [AC:Z99119:AL009126] [GN:ytjA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [LE:139407]


[RE:139634] [DI:direct] >gp:[GI:g2293294] [LN:AF008220] [AC:AF008220]


[PN:YtjA] [GN:ytjA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [NT:similar to hypothetical 9.3 kD


protein from P.] [LE:40793] [RE:41020] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_30079651_f1_66
2262
6034
1620
539
1135
4.0e-115










Description


sp:[LN:SERA_BACSU] [AC:P35136:032011] [GN:SERA] [OR:BACILLUS SUBTILIS]


[EC:1.1.1.95] [DE:D-3-PHOSPHOGLYCERATE DEHYDROGENASE, (PGDH)]


[SP:P35136:032011] [DB:swissprot] >pir:[LN:C69705] [AC:C69705:S45534]


[PN:phosphoglycerate dehydrogenase, serA] [GN:serA] [CL:Bacillus


phosphoglycerate dehydrogenase] [OR:Bacillus subtilis] [EC:1.1.1.95]


[DB:pir2] >gp:[GI:e1185576:g2634742] [LN:BSUB0013] [AC:Z99116:AL009126]


[PN:phosphoglycerate dehydrogenase] [GN:serA] [FN:serine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.1.1.95] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [SP:P35136]


[LE:15060] [RE:16637] [DI:direct] >gp:[GI:g1146196] [LN:BACSERA] [AC:L47648]


[PN:phosphoglycerate dehydrogenase] [GN:serA] [FN:serine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


phosphoglycerate dehydrogenase (serA), ypaA,ferredoxin (fer), ypbB, recS,


ypbD, ypbE, ypbF, ypbG, ypbH, glutamate dehydrogenase (ypcA), ypdA, ypdB,


ypdC, spore cortexlytic enzyme (sleB), ypeB, ypfA, ypfB, cytidine


monophosphatekinase (cmk), ypfD, ypgA, yphA, yphB, yphC, NAD+


dependentglycerol-3-phosphate dehydrogenase (glyc), yphE and yphF


genes, complete cds.] [LE:40] [RE:1617] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_30084402_f3_446
2263
6035
1188
395
716
1.0e-70










Description


sp:[LN:DHSS_SYNP1] [AC:P14776] [OR:SYNECHOCOCCUS SP] [SR:PCC 6716,]


[EC:1.12.—.—] [DE:SUBUNIT)] [SP:P14776] [DB:swissprot] [>pir:[LN:HQYCSS]


[AC:S06919] [PN:soluble hydrogenase, small chain] [CL:serine--pyruvate


aminotransferase] [OR:Synechococcus sp.] [EC:1.12.—.—] [DB:pir1]


>gp:[GI:g480541 [LN:SYNSOLHY] [AC:X16658] [OR:Synechococcus sp.]


[SR:Synechococcus sp] [DB:genpept-bct1] [DE:Synechococcus DNA for the small


subunit of soluble hydrogenase.] [NT:small subunit of soluble hydrogenase


(AA 1-384)] [SP:P14776] [LE:226] [RE:1380] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_30114637_c3_847
2264
6036
1167
388
1177
1.4e-119










Description


pir:[LN:E69820] [AC:E69820 ] [PN:conserved hypothetical protein yhbA]


[GN:yhbA ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182880:g2633214]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhbA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to 1011250.] [NT:alternate gene name:ygaP; similar to


hypothetical] [LE:164477] [RE:165784] [DI:direct] >gp:[GI:e308636:g1903044]


[LN:BSZ93102] [AC:Z93102] [PN:hypothetical 48.5 kd protein] [GN:ygaP]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


yga[L,M,N,O,P,Q,R,S,T], yzdB and yze[A,C} genes.] [LE:6803] [RE:8110]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_30274187_f3_522
2265
6037
969
322
1317
2.0e-134










Description


pir:[LN:D69999] [AC:D69999 ] [PN:conserved hypothetical protein ytqA]


[GN:ytqA ] [CL:Methanococcus jannaschii conserved hypothetical protein


MJ0486] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185921:g2635532]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytqA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21): from 2997771 to 3213410.] [NT:similar to hypothetical proteins]


[LE:121310] [RE:122278] [DI:direct] >gp:[GI:g2293302] [LN:AF008220]


[AC:AF008220] [PN:YtqA] [GN:ytqA] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-driaB genomic region.] [NT:similarity to biotine


synthase from B. sphaericus] [LE:58149] [RE:59117] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_30508255_c3_912
2266
6038
1416
471
1011
5.5e-102










Description


pir:[LN:S43914] [AC:S43914] [PN:hypothetical protein 1] [CL:peptidase V]


[OR:Bacillus stearothermophilus] [DB:pir2] >gp:[GI:g436965] [LN:BACMALA]


[AC:L13418] [OR:Bacillus stearothermophilus] [SR:Bacillus stearothermophilus


(library:ATCC 7953) DNA] [DB:genpept-bct1] [DE:Bacillus stearothermophilus


maltose permease (malA) gene, complete cds.] [LE:24] [RE:1376] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_31256568_c2_817
2267
6039
201
66
114
6.2e-07










Description


pir:[LN:F71011] [AC:F71011] [PN:hypothetical protein PH1388] [GN:PH1388]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031437:g32578l1]


[LN APO 00006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:119aa long hypothetical protein] [GN:PH1388] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus horikoshi]


[DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000


nt. position (6/7).] [LE:86760] [RE:87119] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_3140917_c3_954
2268
6040
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_31539156_c3_874
2269
6041
204
67










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_3158502_c2_792
2270
6042
225
74
122
2.7e-07










Description


pir:[LN:A69997] [AC:A69997] [PN:hypothetical protein ytmP] [GN:ytmP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185865:g2635476] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytmP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:61986] [RE:62795] [DI:complement]


>gp:[GI:g2293206] [LN:AF008220] AC:AF008220] [PN:YtmP] [GN:ytmP]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:117631] [RE:118440] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33209677_c2_831> 2271
6043
972
323
764
8.2e-76










Description


pir:[LN:F69999] [AC:F69999] [PN:conserved hypothetical protein ytqI]


[GN:ytqI] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184174:g2635390]


[LN:BSUB0015] [AC:Z99118:AL009126] [GN:ytqI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


15 of 21): from 2795l31 to 3013540.] [NT:similar to hypothetical proteins]


[LE:199851] [RE:200792] [DI:complement] >gp:[GI:g2293259] [LN:AF008220]


[AC:AF008220] [PN:YtqI] [GN:ytqI] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similarity to MGPA


protein from M. genitalium] [LE:182275] [RE:183216] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33287515_f1_122
2272
6044
330
109
89
0.0022










Description


gp:[GI:g4091929] [LN:AF069752] [AC:AF069752] [PN:C5,6 desaturase] [GN:ERG3]


[OR:Candida albicans] [DB:genpept-pln2] [DE:Candida albicans C5,6 desaturase


(ERG3) gene, complete cds.] [LE:387] [RE:1547] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33292165_f1_155
2273
6045
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33317002_f1_114
2274
6046
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33360312_f1_74
2275
6047
420
139
295
1.6e-25










Description


gp:[GI:e1284114:g2982646] [LN:SPAJ2293] [AC:AJ002293] [PN:penicillin-binding


protein lb] [GN:pbp1b] [OR:Streptococcus pneumoniae] [DB:genpept-bct1]


[DE:Streptococcus pneumoniae pbp1b gene, partial, beta-lactamresistant.]


[LE:<1] [RE:>1600] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33647577_c2_740
2276
6048
1386
461
1586
6.4e-163










Description


gp:[GI:e1249821:g2832825] [LN:BS43KBDNA] [AC:AJ223978] [PN:fumarase protein,


CitG] [GN:citG] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis 42.7kB DNA fragment from yvsA to yvqA.] [LE:37816] [RE:39204]


[DI:direct] >gp:[GI:e1184383:g2635801] [LN:BSUB0017] [AC:Z99120:AL009126]


[PN:fumarate hydratase] [GN:citG] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.2.1.2] [DE:Bacillus subtilis complete genome (section 17 of 21): from


3197001 to 3414420.] [LE:191083] [RE:192471] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33650137_c2_794
2277
6049
207
68
177
1.3e-13










Description


pir:[LN:A69999] [AC:A69999] [PN:phenylalanyl-tRNA synthetase (beta subunit)


homolog ytpR] [GN:ytpR] [CL:Mycoplasma genitalium hypothetical protein


MG449] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185855:g2635466]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytpR] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21): from 2997771 to 3213410.] [NT:similar to phenylalanyl-tRNA


synthetase (beta] [LE:54055] RE:54660] [DI:complement] >gp:[GI:g2293213]


[LN:AF008220] [AC:AF008220] [PN:YtpR] [GN:ytpR] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to phenylalanine tRNA ligase of E. coli] [LE:125766]


[RE:126371] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_3365887_c2_791
2278
6050
630
209
501
6.0e-48










Description


pir:[LN:A69997] [AC:A69997] [PN:hypothetical protein ytmP] [GN:ytmP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185865:g2635476] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytmP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:61986] [RE:62795] [DI:complement]


>gp:[GI:g2293206] [LN:AF008220] [AC:AF008220] [PN:YtmP] [GN:ytmP]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:117631] [RE:118440] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33792687_c1_629
2279
6051
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33831512_f2_373
2280
6052
234
77
82
0.0093










Description


gp:[GI:e1346461:g3876981] [LN:CEF40D4] [AC:Z81536] [GN:F40D4.10]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid F40D4, complete sequence.] [LE:20486:20882:21041:21585]


[RE:20830:20997:21200:21746] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_33985077_c1_720
2281
6053
1230
409
1529
7.0e-157










Description


pir:[LN:C70001] [AC:C70001] [PN:malate dehydrogenase homolog ytsJ] [GN:ytsJ]


[CL:malate dehydrogenase (oxaloacetate-decarboxylating)] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184171:g2635387] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:ytsJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to malate dehydrogenase] [LE:193843]


[RE:195075] [DI:complement] >gp:[GI:g2293261] [LN:AF008220] [AC:AF008220]


[PN:YtsJ] [GN:ytsJ] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis rrnB-dnaB genomic region.] [NT:similarity to malate dehydrogenase


(NADP+) from] [LE:18799211 [RE:189224] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34177127_c1_721
2282
6054
1806
601
1853
3.3e-191










Description


sp:[LN:KPYK_BACLI] [AC:P51181] [GN:PYK] [OR:BACILLUS LICHENIFORMIS]


[EC:2.7.1.40] [DE:PYRUVATE KINASE, (PK)] [SP:P51181] [DB:swissprot]


>pir:[LN:JC4220] [AC:JC4220] [PN:pyruvate kinase, :ATP:pyruvate


2-O-phosphotransferase] [CL:pyruvate kinase] [OR:Bacillus licheniformis]


[EC:2.7.1.40] [DB:pir2] >gp:[GI:d1007299:g1041099] [LN:BACPYK2] [AC:D31955]


[PN:Pyruvate Kinase] [OR:Bacillus licheniformis] [SR:Bacillus licheniformis


DNA] [DB:genpept-bct1] [DE:Bacillus licheniformis gene for pyruvate kinase,


complete cds.] [LE:132] [RE:1889] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34178128_c3_888
2283
6055
216
71










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34181551_c2_841
2284
6056
924
307
618
2.4e-60










Description


Sp:[LN:DNAI_BACSU] [AC:P06567] [GN:DNAI] [OR:BACILLUS SUBTILIS]


[DE:PRIMOSOMAL PROTEIN DNAI] [SP:P06567] [DB:swissprot] >pir:[LN:IQBS44]


[AC:B24720:C26580:F69617] [PN:primosome component (helicase loader)


dnaI:dnaA protein homolog, 44K:hypothetical protein Y (dnaB 3′ region)]


[GN:dnaI] [CL:44K dnaA protein homolog] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:g39881] [LN:BSDNAB] [AC:X04963] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis dnaB gene for initiation of


chromosomal replication.] [NT:ORF 311 (AA 1-311)] [SP:P06567] [LE:1843]


[RE:2778] [DI:direct] >gp:[GI:e1184147:g2635363] [LN:BSUB0015]


[AC:Z99118:AL00912G] [PN:helicase loader] [GN:dnaI] [FN:DNA synthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 15 of 21): from 2795131 to 3013540.] [NT:alternate gene name:


ytxA, dnaY] [SP:P06567] [LE:167129] [RE:168064] [DI:complement]


>gp:[GI:e1165286:g1769996] [LN:BSZ75208] [AC:Z75208] [PN:replication


protein] [GN:dnaI] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic sequence 89009bp.] [NT:DNA synthesis; putative primosome component]


[SP:P06567] [LE:1843] [RE:2778] [DI:direct] >gp:[GI:g2293281] [LN:AF008220]


[AC:AF008220] [PN:DnaI] [GN:dnaI] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [LE:2150031 [RE:215938]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34199077_c3_883
2285
6057
1017
338
864
2.1e-86










Description


gp:[GI:g1255260] [LN:SAU51132] [AC:U51132] [PN:o-succinylbenzoic acid (OSB)


synthetase] [GN:menc] [FN:converts SHCHC to OSB in menaquinone]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus


o-succinylbenzoic acid CoA ligase (mene), and o-succinylbenzoic acid


synthetase (menc) genes, complete cds.] [LE:1974] [RE:2975] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34272752_c3_862
2286
6058
963
320
1413
1.4e-144










Description


gp:[GI:g710422] [LN:SAU21636] [AC:U21636] [PN:cmp-binding-factor 1]


[GN:cbf1] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus cmp-binding-factor 1 (cbf1) and ORF X genes,complete cds.] [LE:1155]


[RE:2096] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34415925_c3_914
2287
6059
654
217
540
4.5e-52










Description


pir:[LN:B69997] [AC:B69997] [PN:conserved hypothetical protein ytmQ]


[GN:ytmQ] [CL:hypothetical protein H10340] [OR:Bacillus subtilis] [DB:pir2] 


>gp:[GI:e1185863:g2635474] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytmQ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [NT:similar to


hypothetical proteins] [LE:60859] [RE:61500] [DI:complement]


>gp:[GI:g2293207] [LN:AF008220] [AC:AF008220] [PN:YtmQ] [GN:ytmQ]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [NT:similar to hypothetical protein HI0340 from H.]


[LE:118926] [RE:119567] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34429838_c3_884
2288
6060
483
160
261
1.6e-22










Description


pir:[LN:E69994] [AC:E69994 ] [PN:hypothetical protein ytkD] [GN:ytkD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185936:g2635547] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytkD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:136293] [RE:136769] [DI:complement]


>gp:[GI:g2293161] [LN:AF008220] [AC:AF008220] [PN:YtkD] [GN:ytkD]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:43658] [RE:44134] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34610925_f3_445
2289
6061
462
153
274
6.9e-24










Description


pir:[LN:F69883] [AC:F69883] [PN:conserved hypothetical protein ymaD]


[GN:ymaD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:el183387:g2634112]


[LN:BSUB0010] [AC:Z99113:AL009126] [GN:ymaD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


10 of 21): from 1781201 to 2014980.] [NT:similar to hypothetical proteins]


[LE:82267] [RE:82719] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_34617017_c3_869
2290
6062
759
252
773
9.1e-77










Description


sp:[LN:ECSA_BACSU] [AC:P55339] [GN:ECSA:PRST] [OR:BACILLUS SUBTILIS]


[DE:ABC-TYPE TRANSPORTER ATP-BINDING PROTEIN ECSA] [SP:P55339]


[DB:swissprot] >pir:[LN:F69619] [AC:F69619] [PN:ABC transporter


(ATP-binding protein) ecsA] [GN:ecsA] [CL:ATP-binding cassette homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e183449:g1177253] [LN:BSECSABCG]


[AC:X87807] [PN:putative ATP-binding protein of ABC-type] [GN:ecsA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis ecsA, ecsB, and ecsC


genes.] [SP:P55339] [LE:248] [RE:991] [DI:direct] >gp:[GI:e1183006:g2633340]


[LN:BSUB0006] [AC:Z99109:AL009126] [PN:ABC transporter (ATP-binding


protein)] [GN:ecsA] [FN:regulates both components of the protein]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 6 of 21): from 999501 to 1209940.] [NT:alternate gene name:


prsT, ecs-26, yhaD] [SP:P55339] [LE:77413] [RE:78156] [DI:direct]


>gp:[GI:e324952:g2226115] [LN:BSY14077] [AC:Y14077] [PN:Hypothetical


protein] LGN:yhaD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subitlis 10.6 Kb chromosomal DNA:glyB-prsA region.] [NT:Identified as ecsA.


Similar to many ATP binding ABC] [SP:P55339] [LE:2757] [RE:3500]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_35360932_c3_944
2291
6063
1278
425
1493
4.6e-153










Description


sp:[LN:ACKA_BACSU] [AC:P37877] [GN:ACKA] [OR:BACILLUS SUBTILIS] [EC:2.7.2.1]


[DE:ACETATE KINASE, (ACETOKINASE)] [SP:P37877] [DB:swissprot]


>pir:[LN:B499351 [AC:B49935:C69581] [PN:acetate kinase, ackA] [GN:ackA]


[CL:acetate kinase] [OR:Bacillus subtilis] [EC:2.7.2.1] [DB:pir2]


>gp:[GI:e1185820:g2635431] [LN:BSUB0016] [AC:Z99119:AL009126] [PN:acetate


kinase] [GN:ackA] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.2.1]


[DE:Bacillus subtilis complete genome (section 16 of 21): from 2997771 to


3213410.] [SP:P37877][LE:16413] [RE:17600] [DI:complement]


>gp:[GI:g2293240] [LN:AF008220] [AC:AF008220] [PN:acetate kinase] [GN:ackA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:162827] [RE:164014] [DI:directll >gp:[GI:g405134]


[LN:BACACKA] [AC:L17320] [PN:acetate kinase] [GN:ackA] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain W168) DNA] [DB:genpept-bct2]


[DE:Bacillus subtilis acetate kinase (ackA) gene, complete cds.] [LE:698]


[RE:1885] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_36152191_c3_863
2292
6064
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_36541078_c1_647
2293
6065
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_3906642_c1_632
2294
6066
600
199
244
1.0e-20










Description


pir:[LN:H69778] [AC:H69778] [PN:hypothetical protein ydeN] [GN:ydeN]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020114:g1881334] [LN:AB001488]


[AC:AB001488] [GN:ydeN] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:FUNCTION


UNKNOWN.] [LE:106671] RE:107243] [DI:complement] >gp:[GI:e1182492:g2632826]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydeN] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21): from 402751 to 611850.] [LE:170416] [RE:170988] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_3944015_c1_608
2295
6067
540
179
331
6.2e-30










Description


pir:[LN:S68867] [AC:568867:554422] [PN:probable transport protein arpJ:ABC


transporter arpJ] [OR:Listeria monocytogenes] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4073892_c1_631
2296
6068
1458
485
1083
1.3e-109










Description


sp:[LN:PPOX_BACSU] [AC:P32397] [GN:HEMY:HEMG] [OR:BACILLUS SUBTILIS]


[EC:1.3.3.4] [DE:PROTOPORPHYRINOGEN OXIDASE, (PPO)] [SP:P32397]


[DB:swissprot] >pir:[LN:D47045] [AC:D47045:D69640] [PN:coproporphyrinogen


III oxidase/protoporphyrinogen IX oxidase hemY] [GN:hemY] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g143045] [LN:BACHEMEHY] [AC:M97208] [GN:hemY]


[FN:involved in a late step of protoheme IX] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain W168) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis penicillin binding protein 1A (ponA) gene; uroporphyrinogen


decarboxylase (hemE) gene; ferrochelatase (hemH) gene complete cds, (hemY)


gene, complete cds; ORFA, complete cds; ORFB 5′ end.] [LE:3985] [RE:5397]


[DI:direct] >gp:[GI:e1183016:g2633350] [LN:BSUB0006] [AC:Z99109:AL009126]


[PN:protoporphyrinogen IX and coproporphyrinogen III] [GN:hemY] [FN:late


steps of protoheme IX synthesis (porphyrin] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.3.3.4] [DE:Bacillus subtilis complete genome


(section 6 of 21): from 999501 to 1209940.] [NT:alternate gene name:hemG]


[SP:P32397] [LE:88170] [RE:89582] [DI:direct] >gp:[GI:e325009:g2226232]


[LN:BSY14083] [AC:Y14083] [PN:Protoporphyrinogen IX oxidase] [GN:hemY]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosomal


DNA, region 76–78 degrees: between glyB-aprE.] [NT:see Swiss Prot P32397;


HEMG_BACSU.] [SP:P32397] [LE:8029] [RE:9441] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4110882_f3_473
2297
6069
351
116
90
0.00022










Description


pir:[LN:D70004] [AC:D70004] [PN:hypothetical protein ytzB] [GN:ytzB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185860:g2635471] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytzB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:57791] [RE:58108] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4173427_c2_742
2298
6070
474
157
82
0.0020










Description


pir:[LN:A64334] [AC:A64334] [PN:hypothetical protein MJ0272] 


[OR:Methanococcus jannaschii] [DB:pir2] [MP:FOR257413-257652]


>gp:[GI:g1590997] [LN:U67482] [AC:U67482:L77117] [PN:repressor protein,


putative (yorfE)] [GN:MJ0272] [OR:Methanococcus jannaschii]


[DB:genpept-bct2] [DE:Methanococcus jannaschii section 24 of 150 of the


complete genome.] [NT:similar to GP:1536960 percent identity:40.32;]


[LE:563311 [RE:5872] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4183428_c3_921
2299
6071
1329
442
1966
3.5e-203










Description


sp:[LN:MURC_STAAU] [AC:O31211] [GN:MURC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.3.2.8] [DE:ACETYLMURANOYL-L-ALANINE SYNTHETASE)] [SP:O31211]


[DB:swissprot] >gp:[GI:g2642659] [LN:AF034076] [AC:AF034076]


[PN:UDP-N-acetylmuramoyl-L-alanine synthetase] [GN:murC] [FN:cell wall


biosynthesis] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus UDP-N-acetylmuramoyl-L-alanine synthetase (murC)


gene, complete cds.] [NT:MurC; UDP-N-acetylmuramate-alanine ligase] [LE:1]


[RE:1314] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4296950_c2_764
2300
6072
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4299175_c1_637
2301
6073
240
79
102
0.00012










Description


pir:[LN:T00158] [AC:T00158] [PN:amidase,] [OR:Staphylococcus aureus phage


phi PVL] [EC:3.5.—.—] [DB:pir3] >gp:[GI:d1032859:g3341932] [LN:AB009866]


[AC:AB009866] [PN:amidase (peptidoglycan hydrolase)] [OR:bacteriophage phi


PVL] [SR:bacteriophage phi PVL (specific_host:Staphylococcus aureus ATC]


[DB:genpept-phg] [DE:Bacteriophage phi PVL proviral DNA, complete sequence.]


[NT:orf 25] [LE:20199] [RE:21653] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4345967_f2_357
2302
6074
441
146
368
7.5e-34










Description


sp:[LN:HIT_BACSU] [AC:O07513] [GN:HIT] [OR:BACILLUS SUBTILIS] [DE:HIT


PROTEIN] [SP:O07513] [DB:swissprot] >pir:[LN:A69642] [AC:A69642]


[PN:cell-cycle regulation histidine triad (HIT) protein] [GN:hit]


[CL:protein kinase C inhibitor:histidine triad homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1183005:g2633339] [LN:BSUB000S]


[AC:Z99109:AL009126] [PN:Hit-like protein] [GN:hit] [FN:cell-cycle


regulation (inhibition of cell] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 6 of 21): from 999501


to 1209940.] [NT:alternate gene name:yhaE] [SP:O07513] [LE:76488] [RE:76925]


[DI:complement] >gp:[GI:e325178:g2226116] [LN:BSY14077] [AC:Y14077]


[PN:Hypothetical protein] [GN:yhaE] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subitlis 10.6 Kb chromosomal DNA:glyB-prsA region.]


[NT:Similarity to the Hit family of proteins] [SP:007513] [LE:3988]


[RE:4425] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4453537_c3_937
2303
6075
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4459380_c1_712
2304
6076
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4502308_c2_812
2305
6077
636
211
502
4.7e-48










Description


pir:[LN:E69826] [AC:E69826] [PN:1-acylglycerol-3-phosphate O-acyltransfera


homolog yhdO] [GN:yhdO] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182955:g2633289] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdO]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:similar to


1-acylglycerol-3-phosphate] [LE:31375] [RE:31974] [DI:direct]


>gp:[GI:e325031:g22262101 [LN:BSY14082] [AC:Y14082] [PN:hypothetical


protein] [GN:yhdO] [OR:Bacillus subtilis] [DB:genpept-bct11 [DE:Bacillus


subtilis chromosomal DNA, region 72 to 75 degrees: spoVR to sspB.]


[NT:Similarity to a hypothetical protein from] [LE:18023] [RE:18622]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4511283_c3_859
2306
6078
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4568761_c1_630
2307
6079
1116
371
1257
4.7e-128










Description


sp:[LN:DCUP_BACSU] [AC:P32395] [GN:HEME] [OR:BACILLUS SUBTILIS]


[EC:4.1.1.37] [DE:UROPORPHYRINOGEN DECARBOXYLASE, (UPD)] [SP:P32395]


[DB:swissprot] >pir:[LN:B47045] [AC:B47045:G69639] [PN:uroporphyrinogen


decarboxylase, hemE:uroporphyrinogen III decarboxylase hemE] [GN:hemE]


[CL:uroporphyrinogen decarboxylase] [OR:Bacillus subtilisil [EC:4.1.1.37]


[DB:pir2] >gp:[GI:g143043] [LN:BACHEMEHY] [AC:M97208] [PN:uroporphyrinogen


decarboxylase] [GN:hemE] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain W168) DNA] [DB:genpept-bct1] [EC:4.1.1.37] [DE:Bacillus subtilis


penicillin binding protein 1A (ponA) gene; uroporphyrinogen decarboxylase


(hemE) gene; ferrochelatase (hemH) gene complete cds, (hemY) gene, complete


cds; ORFA, complete cds; ORFB 5′ end.] [LE:1905] [RE:2966] [DI:direct]


>gp:[GI:e1183014:g2633348] [LN:BSUB0006] [AC:Z99109:AL009126]


[PN:uroporphyrinogen III decarboxylase] [GN:hemE] [FN:porphyrin


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:4.1.1.37]


[DE:Bacillus subtilis complete genome (section 6 of 21): from 999501


to 1209940.] [SP:P32395] [LE:86090] [RE:87151] [DI:direct]


>gp:[GI:e325194:g2226230] [LN:BSY14083] [AC:Y14083] [PN:Uroporphyrinogen III


decarboxylase] [GN:hemE] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.1.37] [DE:Bacillus subtilis chromosomal DNA, region 76–78 degrees:


between glyB-aprE.] [NT:see Swiss Prot P32395; DCUP_BACSU.] [SP:P32395]


[LE:5949] [RE:7010] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4579675_f3_569
2308
6080
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4693800_f2_225
2309
6081
570
189
191
4.3e-15










Description


pir:[LN:A69220] [AC:A69220] [PN:conserved hypothetical protein MTH898]


[GN:MTH898] [CL:Escherichia coli ybdQ protein] [OR:Methanobacterium


thermoautotrophicum] [DB:pir2] >gp:[GI:g2621993] [LN:AE000865]


[AC:AE000865:AE000666] [PN:conserved protein] [GN:MTH898]


[OR:Methanobacterium thermoautotrophicum] [DB genpept-bct1]


[DE:Methanobacterium thermoautotrophicum from bases 808939 to 820180 (section


71 of 148) of the complete genome.] [NT:Function Code:14.01 - Unknown,


Conserved protein;] CLE:6700] [RE:7149] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4697318_c3_919
2310
6082
867
288
671
5.8e-66










Description


pir:[LN:H69998] [AC:H69998] [PN:hypothetical protein ytpQ] [GN:ytpQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185856:g2635467] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytpQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [LE:54676] [RE:55485] [DI:complement]


>gp:[GI:g2293212] [LN:AF008220] [AC:AF008220] [PN:YtpQ] [GN:ytpQ]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:124941] [RE:125750] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_472538_c1_707
2311
6083
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4776702_c1_669
2312
6084
312
103
164
3.1e-12










Description


sp:[LN:YRKF_BACSU] [AC:P54433] [GN:YRKF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.7 KD PROTEIN IN BLTR-SPOIIIC INTERGENIC REGION]


[SP:P54433] [DB:swissprot] >pir:[LN:D69976] [AC:D69976] [PN:conserved


hypothetical protein yrkF] [GN:yrkF] [OR:Bacillus subtilis] [DB:pir2] 


>gp:[GI:d1013040:g1303705] [LN:BACJH642] [AC:D84432:D82370] [PN:YrkF]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642 (trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:6477] [RE:7034] [DI:direct] >gp:[GI:e1183882:g2635098]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrkF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [NT:similar to hypothetical proteins


from B. subtilis] [SP:P54433] [LE:112396] [RE:112953] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4876300_c2_806
2313
6085
1695
564
1845
2.3e-190










Description


sp:[LN:FTHS_STRMU] [AC:Q59925:Q59926] [GN:FHS] [OR:STREPTOCOCCUS MUTANS]


[EC:6.3.4.3] [DE:SYNTHETASE) (FHS) (FTHFS)] [SP:Q59925:Q59926]


[DB:swissprot] >gp:[GI:g1103865] [LN:SMU39612] [AC:U39612]


[PN:formyl-tetrahydrofolate synthetase] [GN:fhs] [FN:enzyme involved in the


formation of] [OR:Streptococcus mutans] [DB:genpept-bct1] [EC:6.3.4.3]


[DE:Streptococcus mutans formyl-tetrahydrofolate synthetase (fhs)


gene, complete cds.] [NT:formyl-tetrahydrofolate ligase; ATP-dependant]


[LE:115] [RE:1785] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4876718_c1_617
2314
6086
1143
380
810
1.1e-80










Description


pir:[LN:E69824] [AC:E69824] [PN:two-component sensor histidine kinase


homolog yhcY] [GN:yhcY] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182921:g2633255] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhcY]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to 1011250.] [NT:similar to


two-component sensor histidine kinase] [LE:205305] [RE:206444] [DI:direct]


>gp:[GI:e1182933:g2633267] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhcY]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21): from 999501 to 1209940.] [NT:similar to


two-component sensor histidine kinase] [LE:8625] [RE:9764] [DI:direct]


>gp:[GI:e1191876:g2226140] [LN:BSY14079] [AC:Y14079] [PN:hypothetical


protein] [GN:yhcY] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 75 degrees: glpPFKDoperon and downstream.]


[NT:similarity to the sensory transduction kinase degS] [LE:8273] [RE:9412]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4882963_f3_591
2315
6087
834
277
457
2.8e-43










Description


sp:[LN:YHCT_BACSU] [AC:P54604] [GN:YHCT] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 33.7 KD PROTEIN IN CSPB-GLPP INTERGENIC REGION] [SP:P54604]


[DB:swissprot] >pir:[LN:H69823] [AC:H69823] [PN:conserved hypothetical


protein yhcT] [GN:yhcT] [CL:conserved hypothetical protein H10176]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e233879:g1239996] [LN:BS75DGREG]


[AC:X96983] [PN:hypothetical protein] [GN:yhcT] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 75 degrees:cspB


upstream of glpPFKD operon).] [NT:Similarity to DRAP deaminase from


Saccharomyces] [SP:P54604] [LE:16504] [RE:17412] [DI:complement]


>gp:[GI:e1182910:g2633244] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhcT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to 1011250.] [NT:similar to


hypothetical proteins] [SP:P54604] [LE:192310] [RE:193218] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_4938877_c2_778
2316
6088
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5081252_f2_327
2317
6089
360
119
199
6.1e-16










Description


pir:[LN:A70341] [AC:A70341] [PN:conserved hypothetical protein aq_449]


[GN:aq_449] [CL:hypothetical protein MJ1523] [OR:Aquifex aeolicus]


[DB:pir2] >gp:[GI:g2983116] [LN:AE000690] [AC:AE000690:AE000657]


[PN:hypothetical protein] [GN:aq_449] [OR:Aquifex aeolicus]


[DB:genpept-bct2] [DE:Aquifex aeolicus section 22 of 109 of the complete


genome.] [LE:10789] [RE:11163] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5132078_c3_845
2318
6090
729
242
752
1.5e-74










Description


pir:[LN:H69334] [AC:H69334] [PN:glutamine transport protein glnQ] [GN:glnQ]


[CL:inner membrane protein malK:ATP-binding cassette homology]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649950] [LN:AE001058]


[AC:AE001058:AE000782] [PN:glutamine ABC transporter, ATP-binding protein]


[GN:AF0680] [OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus


fulgidus section 49 of 172 of the complete genome.] [NT:similar to GB:M61017


SP:P27675 PID:142988 percent] [LE:10147] [RE:10875] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5135265_c3_967
2319
6091
504
167
438
2.9e-41










Description


gp:[GI:g4982284] [LN:AE001810] [AC:AE001810:AE000512] [PN:conserved


hypothetical protein] [GN:TM1707] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 122 of 136 of the complete genome.]


[NT:similar to GB:M15183 PID:468267 PID:2293279] [LE:13832] [RE:14302]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5273425_c2_735
2320
6092
1053
350
473
5.6e-45










Description


gp:[GI:g4981111] [LN:AE001734] [AC:AE001734:AE000512] [PN:amino acid ABC


transporter, permease protein] [GN:TM0592] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 46 of 136 of the complete


genome.] [NT:similar to GB:AE000782 percent identity:72.86;] [LE:3214]


[RE:3864] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5355250_c1_696
2321
6093
1284
427
1343
3.6e-137










Description


sp:[LN:SYY_BACST] [AC:P00952] [GN:TYRS] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:6.1.1.1] [DE:TYROSYL-TRNA SYNTHETASE, (TYROSINE--TRNA LIGASE] [TYRRS)]


[SP:P00952] [DB:swissprot] >pir:[LN:SYBSYF] [AC:A01179:I40506]


[PN:tyrosine--tRNA ligase, :tyrosyl-tRNA synthetase] [CL:tyrosine--tRNA


ligase] [OR:Bacillus stearothermophilus] [EC:6.1.1.1] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_551907_f3_559
2322
6094
708
235
183
3.0e-14










Description


gp:[GI:g2897104] [LN:AF020798] [AC:AF020798] [PN:putative host cell


surface-exposed lipoprotein] [OR:Streptococcus thermophilus bacteriophage


TP-J34] [DB:genpept-phg] [DE:Streptococcus thermophilus bacteriophage


lysogeny module, integrase homolog (int), putative host cell surface-exposed


lipoprotein, putative metallo-proteinase, repressor, Cro-like


regulatory protein, and P1-antirepressor homolog genes, complete cds.]


[NT:orf142] [LE:3941] [RE:4369] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_572186_c1_692
2323
6095
1284
427
190
2.4e-11










Description


pir:[LN:I51116] [AC:151116] [PN:NF-180] [OR:Petromyzon marinus] [SR:, sea


lamprey] [DB:pir2] >gp:[GI:g632549] [LN:PMU19361] [AC:U19361] [PN:NF-180]


[OR:Petromyzon marinus] [SR:sea lamprey] [DB:genpept-vrtll [DE:Petromyzon


marinus neurofilament subunit NF-180 mRNA, complete cds.] [NT:180 kDa


neurofilament subunit] [LE:122] [RE:3454] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_581382_f2_281
2324
6096
183
60
46
0.040










Description


sp:[LN:PA2A_PSETE] [AC:P23026] [OR:PSEUDONAJA TEXTILIS] [SR:,EASTERN BROWN


SNAKE] [EC:3.1.1.4] [DE:PHOSPHOLIPASE A2 HOMOLOG, TEXTILOTOXIN A CHAIN,]


[SP:P23026] [DB:swissprot] >pir:[LN:S29651] [AC:S29651] [PN:textilotoxin


chain A] [CL:phospholipase A2] [OR:Pseudonaja textilis] [SR:, eastern brown


snake] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5882753_c3_956
2325
6097
273
90










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_5911592_c3_887
2326
6098
924
307
89
0.0048










Description


gp:[GI:e1347496:g3877859] [LN:CEF58G6] [AC:Z68217] [GN:F58G6.1]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid F58G6, complete sequence.] [NT:Similarity to Chicken amphiphysin (PIR


Acc. No.] [LE:4939:5597:5746] [RE:5253:5662:5844] [DI:complementJoin]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6070392_c3_911
2327
6099
708
235
458
2.2e-43










Description


gp:[GI:g4980760] [LN:AE001708] [AC:AE001708:AE000512] [PN:16S


pseudouridylate synthase] [GN:TM0264] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 20 of 136 of the complete


genome.] [NT:similar to SP:P33918 PID:405907 GB:U00096] [LE:17059]


[RE:1777811 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6100150_c3_881
2328
6100
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6125262_c2_840
2329
6101
192
63
71
0.022










Description


pir:[LN:S72295] [AC:572295] [PN:ribosomal protein S8] [GN:rps8]


[OR:plastid Plasmodium falciparum] [DB:pir2] >gp:IIGI:e220199:g1171601]


[LN:PFCOMPIRB] [AC:X95276] [GN:rps8] [OR:Plasmodium falciparum] [SR:malaria


parasite P. falciparum] [DB:genpept-inv1] [DE:P. falciparum complete gene map


of plastid-like DNA (IR-B).] [LE:5492] [RE:5878] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6317_c1_687
2330
6102
411
136
267
3.8e-23










Description


pir:[LN:G69998] [AC:G69998] [PN:thioredoxin Hi homolog ytpP] [GN:ytpP]


[CL:thioredoxin:thioredoxin homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185857:g2635468] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytpP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21): from 2997771 to 3213410.] [NT:similar to


thioredoxin H1] [LE:55500] [RE:55823] [DI:complement] >gp:[GI:g2293211]


[LN:AF008220] [AC:AF008220] [PN:putative thioredoxin] [GN:ytpP] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:124603] [RE:124926] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6689717_c3_849
2331
6103
615
204
72
0.0043










Description


gp:[GI:g4105715] [LN:AF050754] [AC:AF050754] [PN:glucose 6-phosphate


isomerase] [GN:GPI1] [OR:Giardia intestinalis] [DB:genpept-inv2]


[EC:5.3.1.10] [DE:Giardia intestinalis glucose 6-phosphate isomerase (GPI1)


gene, complete cds.] [NT:aminating isomerase] [LE:432] [RE:1232] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6828305_f3_438
2332
6104
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6906300_c2_826
2333
6105
1014
337
519
7.5e-50










Description


sp:[LN:YTXK_BACSU] [AC:P37876] [GN:YTXK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 37.4 KD PROTEIN IN ACKA-SSPA INTERGENIC REGION] [SP:P37876]


[DB:swissprot] >pir:[LN:G70003] [AC:G70003:A49935] [PN:hypothetical protein


ytxK:hypothetical protein (ackA 5′ region)] [GN:ytxK] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185821:g2635432] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytxK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:alternate gene name:ythI] [SP:P37876]


[LE:17948] [RE:18937] [DI:complement] >gp:[GI:g2293239] [LN:AF008220]


[AC:AF008220] [PN:YtxK] [GN:ytxK] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis rrnB-dnaB genomic region.] [NT:similarity to


modification metilase AccI] [LE:161490] [RE:162479] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_6929651_c3_858
2334
6106
366
121
289
1.8e-25










Description


pir:[LN:A69828] [AC:A69828] [PN:hypothetical protein yheA] [GN:yheA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e118298l:g2633315] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yheA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to 1209940.] LE:54726] [RE:55079] [DI:direct]


>gp:[GI:e324964:g2226157] [LN:BSY14080] [AC:Y14080] [PN:hypothetical


protein] [GN:yheA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 75 degrees:sspB upstream of glyB.]


[LE:6651] [RE:7004] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_2335
6107
3204
1067
1849
5.1e-212










Description


sp:[LN:DP3A_BACSU] [AC:O34623] [GN:DNAE] [OR:BACILLUS SUBTILIS] [EC:2.7.7.7]


[DE:DNA POLYMERASE III, ALPHA CHAIN,] [SP:O346231 [DB:swissprot]


>pir:[LN:D69617] [AC:D69617] [PN:DNA polymerase III (alpha subunit) dnaE]


[GN:dnaE] [CL:DNA-directed DNA polymerase III alpha chain] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184172:g2635388] [LN:BSUB0015]


[AC:Z99118:AL009126] [PN:DNA polymerase III (alpha subunit)] [GN:dnaE]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 15 of 21): from 2795131 to 3013540.] [SP:034623] [LE:195212]


[RE:198559] [DI:complement] >gp:[GI:g2293260] [LN:AF008220] [AC:AF008220]


[PN:DNA-polymerase III alpha-chain] [GN:dnaE] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:184508] [RE:187855][DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_7244012_c1_723
2336
6108
1287
428
1768
3.3e-182










Description


gp:[GI:e320380:g2168132] [LN:BIISOCIT] [AC:Y13358] [PN:isocitrate


dehyrogenase] [OR:Bacillus israeli] [DB:genpept-bct1] [DE:Bacillus israeli


isocitrate dehydrogenase gene.] [LE:242] [RE:15191 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_785952_c1_688
2337
6109
459
152
380
4.0e-35










Description


pir:[LN:A69999] [AC:A69999] [PN:phenylalanyl-tRNA synthetase (beta subunit)


homolog ytpR] [GN:ytpR] [CL:Mycoplasma genitalium hypothetical protein


MG449] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185855:g2635466]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytpR] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21): from 2997771 to 3213410.] [NT:similar to phenylalanyl-tRNA


synthetase (beta] [LE:54055] [RE:54660] [DI:complement] >gp:[GI:g2293213]


[LN:AF008220] [AC:AF008220] [PN:YtpR] [GN:ytpR] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to phenylalanine tRNA ligase of E. coli] [LE:125766]


[RE:126371] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_803393_c3_947
2338
6110
732
243
536
1.2e-51










Description


pir:[LN:H69407] [AC:H69407] [PN:conserved hypothetical protein AF1265]


[CL:conserved hypothetical protein MJ1163] [OR:Archaeoglobus fulgidus]


[DB:pir2] >gp:[GI:g2649315] [LN:AE001017] [AC:AE001017:AE000782]


[PN:conserved hypothetical protein] [GN:AF1265] [OR:Archaeoglobus fulgidus]


[DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 90 of 172 of the


complete genome.] [NT:similar to GB:L77117 PID:1591789 percent identity:]


[LE:9248] [RE:9943] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_817555_f2_358
2339
6111
447
148










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_824086_c3_952
2340
6112
882
293
859
7.0e-86










Description


pir:[LN:G70001] [AC:G70001] [PN:acetyl-CoA carboxylase homolog yttI]


[GN:yttI] [CL:acetyl-CoA carboxylase, carboxyltransferase beta chain]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184170:g2635386] [LN:BSUB0015]


[AC:Z99118:AL009126] [GN:yttI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [NT:similar to acetyl-CoA carboxylase] [LE:192636]


[RE:193424] [DI:complement] >gp:[GI:g2293262] [LN:AF008220] [AC:AF008220]


[PN:acetyl-CoA carboxylase subunit] [GN:yttI] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:189643] [RE:19043111 [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_82562_f3_523
2341
6113
1110
369
680
6.5e-67










Description


pir:[LN:H69758] [AC:H69758] [PN:proline oxidase homolog ycgM] [GN:ycgM]


[CL:proline dehydrogenase homolog yusM] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182272:g2632606] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ycgM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to 415810.] [NT:similar to


proline oxidase] [LE:149473] [RE:150384] [DI:direct]


>gp:[GI:d1009589:g1805392] [LN:D50453] [AC:D50453] [GN:ycgM] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing the amyE-srfA


region, complete cds.] [LE:23774] [RE:24685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_867187_c3_851
2342
6114
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_954768_c3_892
2343
6115
1053
350
611
1.3e-59










Description


sp:[LN:RIBG_BACSU] [AC:P17618] [GN:RIBG] [OR:BACILLUS SUBTILIS] [EC:3.5.4.—]


[DE:RIBOFLAVIN-SPECIFIC DEAMINASE,] [SP:P17618] [DB:swissprot]


>pir:[LN:PN0100] [AC:S45543:PN0100:E69692] [PN:riboflavin-specific


deaminase ribG] [GN:ribG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g4l0125]


[LN:BACDIA] [AC:L09228] [GN:ribG] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain 168, sub_species Marburg) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis spoVA to serA region.] [LE:8266] [RE:9351] [DI:direct]


>gp:[GI:g40085] [LN:BSRIB] [AC:X51510] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis riboflavin biosynthesis operon ribG, ribB,


ribA, ribH, and ribT genes.] [NT:ribG protein product (AA 1–361)] [SP:P17618]


[LE:1212] [RE:2297] [DI:direct] >gp:[GI:e1185597:g2634763] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:riboflavin-specific deaminase] [GN:ribG]


[FN:niboflavin biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 13 of 21): from 2395261 to


2613730.] [SP:P17618] [LE:34232] [RE:35317] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_960012_c1_663
2344
6116
450
149
123
6.9e-08










Description


gp:[GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis staphylococcal accessory


regulator Ahomolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_961562_f3_433
2345
6117
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_9785187_c3_867
2346
6118
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_9845327_c1_648
2347
6119
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000993_9884378_c3_916
2348
6120
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_10240925_c2_505
2349
6121
252
83
65
0.024










Description


gp:[GI:d1037669:g4126667] [LN:AB016427] [AC:AB016427] [PN:transmembrane


protein] [GN:bacM] [OR:Bacillus licheniformis] [SR:Bacillus licheniformis


(strain:ATCC 10716) DNA] [DB:genpept-bct1] [DE:Bacillus licheniformis genes


for transmemibrane protein, thioesterase II-like protein and bacitracin


synthetase 1 (BA1),complete and partial cds.] [NT:putative] [LE:694]


(RE:>1956] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_10553827_c3_663
2350
6122
216
71
132
7.6e-09










Description


pir:[LN:F69808] [AC:F69808] [PN:hypothetical protein yfkK] [GN:yfkK]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182777:g2633111] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfkK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:58273] [RE:58488] [DI:complement]


>gp:[GI:d1024280:g2626823] [LN:D83967] [AC:D83967] [PN:YfkK] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 74 degree region.] [LE:9433] [RE:9648]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_11125052_c1_439
2351
6123
1497
498
1715
1.4e-176










Description


pir:[LN:D70008] [AC:D70008] [PN:nicotinate phosphoribosyltransferase


homolog yueK] [GN:yueK] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184252:g2635670] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yueK]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21): from 3197001 to 3414420.] [NT:similar to


nicotinate phosphoribosyltransferase] [LE:61479] [RE:62951] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_11755317_c3_655
2352
6124
759
252
135
4.4e-07










Description


pir:[LN:G70045] [AC:G70045] [PN:hypothetical protein yvqF] [GN:yvqF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1249815:g2832819] [LN:BS43KBDNA]


[AC:AJ223978] [PN:YvqF protein] [GN:yvqF] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 42.7kB DNA fragment from yvsA to


yvqA.] [LE:31389] [RE:32114] [DI:direct] >gp:[GI:e1184389:g2635807]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvqF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21): from 3197001 to 3414420.] LE:198173] [RE:198898] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_117687_c1_441
2353
6125
1377
458
1704
2.0e-175










Description


sp:[LN:PUR8_BACSU] [AC:P12047] [GN:PURB:PURE] [OR:BACILLUS SUBTILIS]


[EC:4.3.2.2] [DE:ADENYLOSUCCINATE LYASE, (ADENYLOSUCCINASE) ASL)]


[SP:P12047] [DB:swissprot] >pir:[LN:WZBSDS] [AC:C29326:A69684]


[PN:adenylosuccinate lyase,] [GN:purB] [CL:fumarate hydratase] [OR:Bacillus


subtilis] [EC:4.3.2.2] [DB:pir1] [MP:18 min] >gp:[GI:g143366] [LN:BACPURF]


[AC:J02732:K00047] [OR:Bacillus subtilis] [SR:B. subtilis (strain DE1


(prototroph DER. or W168)) DNA, clone pPZ] [DB:genpept-bct1] [DE:B. subtilis


pur operon encoding purine biosynthesis enzymes, 12 genes.]


[NT:adenylosuccinate lyase (PUR-B)] [LE:2056] [RE:3351] [DI:direct]


>gp:[GI:e1182624:g2632958] [LN:BSUB0004] [AC:Z99107:AL009126]


[PN:adenylosuccinate lyase] [GN:purB] [FN:purine biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:4.3.2.2] [DE:Bacillus subtilis complete


genome (section 4 of 21): from 600701 to 813890.] [SP:P12047] [LE:99038]


[RE:100333] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_11959438_c2_534
2354
6126
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1214075_f3_332
2355
6127
507
168
328 1.3e-29










Description


gp:[GI:g4981674] [LN:AE001770] [AC:AE001770:AE000512] [PN:ferritin]


[GN:TM1128] [OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga


maritima section 82 of 136 of the complete genome.] [NT:similar to


GB:AE000782 percent identity:71.95;] [LE:15936] [RE:16430] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_12142768_f1_9
2356
6128
300
99
110
4.2e-06










Description


pir:[LN:D71245] [AC:D71245 ] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_12270011_f2_269
2357
6129
180
59
239
3.5e-20










Description


gp:[GI:e1311097:g3320009] [LN:SEHLDGN] [AC:Z49220] [GN:agrD]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:Staphylococcus


epidermidis hld and agr[A,B,C,D] genes.] [LE:1327] [RE:1467] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_12531558_f3_283
2358
6130
351
116










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_12603166_f3_301
2359
6131
303
100
100
1.9e-05










Description


pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:A5009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1287557_f1_56
2360
6132
213
70










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_13678131_f3_393
2361
6133
840
279
299
1.5e-26










Description


pir:[LN:E69787] [AC:E69787] [PN:hypothetical protein ydiL] [GN:ydiL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182580:g2632914] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:ydiL] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [LE:47946] [RE:48680] [DI:complement]


>gp:[GI:d1020504:g1945117] [LN:D88802] [AC:D88802] [GN:ydiL] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168,


isolate:JH642] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


phoB-rrnE-groESL region, complete cds.] [NT:transmembrane] [LE:34948]


[RE:35682] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1377337_c3_668
2362
6134
840
279
602
1.2e-58










Description


gp:[GI:g310603] [LN:STAORFPHI] [AC:L19300] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (library:NCTC 8325) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus DNA sequence encoding three ORFs, complete cds;


prophage phi-11 sequence homology, 5′ flank.] [LE:2651] [RE:3100]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_13837927_c2_518
2363
6135
1155
384
621
1.2e-60










Description


sp:[LN:TNPA_STAAU] [AC:P06696] [GN:TNPA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:TRANSPOSASE A (TRANSPOSON TN554)] [SP:P06696] [DB:swissprot]


>pir:[LN:A24584] [AC:A24584] [PN:transposition regulatory protein tnpA]


[GN:tnpA] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g581277]


[LN:ISTN554] [AC:X03216:K02987] [PN:tnpA protein] [GN:tnpA]


[OR:Staphylococcus aureus] [DB genpept-bct1] [DE:Staphylococcus aureus


transposon Tn554.] [NT:(aa 1-361)] [SP:P06696] [LE:134] [RE:1219]


[DI:direct] >gp:[GI:d1046007:g5360831] [LN:D86934] [AC:D86934]


[PN:transposaseA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N045; tnpA]


[LE:29383] [RE:30468] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_13851088_c3_609
2364
6136
1089
362
185
6.2e-14










Description


gp:[GI:g1947171] [LN:CELE03H12] [AC:AF000299] [GN:E03H12.5]


[OR:Caenorhabditis elegans] [SR:Caenorhabditis elegans strain=Bristol N2]


[DB:genpept-inv2] [DE:Caenorhabditis elegans cosmid E03H12.] [NT:coded for


by C. elegans cDNA yk170g3.5] [LE:1043:1176:1733] [RE:1131:1689:1762]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1385927_c1_442
2365
6137
711
236
851
4.9e-85










Description


sp:[LN:PCRB_STAAU] [AC:Q53726] [OR:STAPHYLOCOCCUS AUREUS] [DE:PCRB PROTEIN]


[SP:Q53726] [DB:swissprot] >pir:[LN:S39922] [AC:S39922:S27666 ] [PN:pcrB


protein] [CL:pcrB protein] [OR:Staphylococcus aureus] [DB:pir2]


>gp:[GI:g153061] [LN:STAPCRA] [AC:M63176] [GN:pcrA] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain SA20) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus helicase required for T181 replication (pcrA) gene,


complete cds.] [LE:256] [RE:939] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1410277_f1_15
2366
6138
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1414005_c1_477
2367
6139
579
192
324
3.4e-29










Description


pir:[LN:F69815] [AC:F69815] [PN:hypothetical protein ygaC] [GN:ygaC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182857:g2633191] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:ygaC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:135417] [RE:135734] [DI:direct]


>gp]GI:e281578:g1673391] [LN:BSZ82044] [AC:Z82044] [PN:hypothetical 12.2 kd


protein] [GN:ygaC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


25 kb genomic DNA segment (from sspE to katA).] [LE:2267] [RE:2584]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14460882_c3_694
2368
6140
240
79
365
1.6e-33










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14460882_f2_232
2369
6141
126
41
99
9.9e-05










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635][PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14581306_f3_377
2370
6142
303
100
160
8.2e-12










Description


gp:[GI:g3676415] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf149] [LE:2068] [RE:2484]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14642137_f3_381
2371
6143
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14714077_c1_445
2372
6144
1209
402
715
1.3e-70










Description


pir:[LN:G69794] [AC:G69794] [PN:hypothetical protein yerH] [GN:yerH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182643:g2632977] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yerH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [LE:122441] [RE:123631] [DI:direct]


>gp:[GI:e1167977:g2577966] [LN:BSYERABCD] [AC:Y15254] [PN:YerH protein]


[GN:yerH] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


13kB DNA fragment, from yerA to sapB gene.] [LE:10086] [RE:11276]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14845336_f1_44
2373
6145
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14849093_c3_686
2374
6146
294
97
133
6.0e-09










Description


pir:[LN:F71245] [AC:F71245] [PN:hypothetical protein PHS004] [GN:PHS004]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030236:g3256610]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:A1B009469] [PN:58aa


long hypothetical protein] [GN:PHS004] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3] DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [NT:similar to


GENPEPT:Z47547 percent identity:50.000] [LE:195255] [RE:195431] DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14883592_c1_429
2375
6147
2076
691
600
2.0e−58










Description


pir:[LN:S40098] [AC:S40098] [PN:hypothetical protein] [OR:Clostridium


butyricum] [DB:pir2] >gp:[GI:g436133] [LN:CBPYFOLY] [AC:Z29084]


[OR:Clostridium butyricum] [DB:genpept-bct1] [DE:C. butyricum transposon


containing tbcC gene.] [NT:product is similar to TnpB of transposon Tn554


from] [LE:1088] [RE:3070] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_14900826_c2_587
2376
6148
351
116
188
8.9e−15










Description


gp:[GI:g208931] [LN:SYNORFLAC] [AC:M15619] [OR:synthetic construct]


[SR:E. coli (strain SE5000) synthetic DNA, clone pKB1] [DB:genpept-syn]


[DE:Synthetic E. coli ORF16/lacZ fusion protein, partial cds.] [NT:ORF16-lacZ


fusion protein] [LE:29] [RE:>232] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_15033167_c3_671
2377
6149
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_15041430_c2_563
2378
6150
249
82










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_15121077_c1_448
2379
6151
1476
491
1626
3.7e−167










Description


pir:[LN:B69795] [AC:B69795] [PN:amidase homolog yerM] [GN:yerM]


[CL:indoleacetamide hydrolase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182648:g2632982] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yerM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to 813890.] [NT:alternate gene


name: yedB; similar to amidase] [LE:127844] [RE:129301] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_16110257_f3_287
2380
6152
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_16209675_c3_674
2381
6153
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_16219007_f3_366
2382
6154
921
306
1319
1.3e−134










Description


sp:[LN:BLAC_STAAU] [AC:P00807] [GN:BLAZ] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.5.2.6] [DE:BETA-LACTAMASE PRECURSOR, (PENICILLINASE)] [SP:P00807]


[DB:swissprot] >pir:[LN:PNSAP]


[AC:A01002:A23600:A90289:S06757:A45789:B45789:D45789::S11784:A60992]


[PN:beta-lactamase, precursor:cephalosporinase:penicillinase] [GN:blaZ]


[CL:beta-lactamase I] [OR:Staphylococcus aureus] [EC:3.5.2.6] [DB:pir1]


>gp:[GI:g551850] [LN:ENEBELAA] [AC:M60253] [PN:beta-lactamase] [GN:blaZ]


[OR:Enterococcus faecalis] [SR:Enterococcus faecalis (strain HH22) cDNA to


mRNA] [DB:genpept-bct1] [EC:3.5.2.6] [DE:E. faecalis beta-lactamase mRNA,


complete cds.] [LE:142] [RE:987] [DI:direct] >gp:[GI:g150717] [LN:PI25BLAZA]


[AC:M15526] [PN:beta-lactamase] [GN:blaZ] [OR:Plasmid pI258] [SR:Plasmid


pI258 (clone: pWN101) DNA] [DB:genpept-bct1] [EC:3.5.2.6] [DE:Plasmid pI258


(from S. aureus) beta-lactamase (blaZ), complete cds.] [LE:140] [RE:985]


[DI:direct] >gp:[GI:g581568] [LN:SAPBLAZ] [AC:X04121] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:S. aureus PC1 beta-lactamase gene blaZ from


plasmid pI258.] [NT:beta-lactamase (aa 1–281)] [SP:P00807] [LE:140] [RE:985]


[DI:direct] >gp:[GI:g581590] [LN:SATN552] [AC:X52734] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:S. aureus Tn552 transposable element.] [NT:blaZ


protein (AA 1–281)] [SP:P00807] [LE:5399] [RE:6244] [DI:direct]


>gp:[GI:g581591] [LN:SATNBLAZ] [AC:X16471] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus transposon Tn4002 blaZ gene


forbeta-lactamase.] [NT:beta-lactamase (AA 1–281)] [SP:P00807] [LE:142]


[RE:987] [DI:direct] >gp:[GI:g1575125] [LN:SAU58139] [AC:U58139]


[PN:beta-lactamase] [GN:blaZ] [OR:Staphylococcus aureus] [SR:Staphylococcus


aureus strain = a53] [DB:genpept-bct1] [DE:Staphylococcus aureus


beta-lactamase (blaz) gene, complete cds.] [LE:142] [RE:987] [DI:direct]


>gp:[GI:g537336] [LN:STALACBAA] [AC:M25252] [PN:beta-lactamase]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus (clone pPC1) beta-lactamase gene, complete cds.]


[LE:123] [RE:968] [DI:direct] >gp:[GI:g537337] [LN:STALACBAB] [AC:M25253]


[PN:beta-lactamase] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus (clone pS1) beta-lactamase


gene, complete cds.] [LE:29] [RE:874] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_16677343_c1_412
2383
6155
447
148
111
1.3e−06










Description


sp:[LN:Y357_METJA] [AC:Q57803] [GN:MJ0357] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0357] [SP:Q57803] [DB:swissprot] >pir:[LN:E64344]


[AC:E64344] [PN:hypothetical protein MJ0357] [OR:Methanococcus jannaschii]


[DB:pir2] [MP:REV326407–325940] >gp:[GI:g1591066] [LN:U67489]


[AC:U67489:L77117] [PN:M. jannaschii predicted coding region MJ0357]


[GN:MJ0357] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 31 of 150 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:1632] [RE:2099]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_16695300_f3_307
2384
6156
1113
370
586
5.9e−57










Description


pir:[LN:H69815] [AC:H69815] [PN:hypothetical protein ygaE] [GN:ygaE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182859:g2633193] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:ygaE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:137853] [RE:138914] [DI:complement]


>gp:[GI:e281580:g1673393] [LN:BSZ82044] [AC:Z82044] [PN:hypothetical 40.7 kd


protein] [GN:ygaE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


25 kb genomic DNA segment (from sspE to katA).] [LE:4703] [RE:5764]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_19536693_c3_645
2385
6157
318
105
232
1.9e−19










Description


pir:[LN:A69795] [AC:A69795] [PN:conserved hypothetical protein yerL]


[GN:yerL] [CL:probable glu-tRNA amidotransferase C chain] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:g2589194] [LN:AF008553] [AC:AF008553]


[PN:Glu-tRNAGln amidotransferase subunit C] [GN:gatC] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis Glu-tRNAGln amidotransferase


subunits C (gatC), A (gatA) and B (gatB) genes, complete cds.] [LE:412]


[RE:702] [DI:direct] >gp:[GI:g2114425] [LN:BSU92466] [AC:U92466]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis strain JH642


amidase-like protein, partial cds, osmoregulated proline transporter (opuE)


gene, complete cds and SapB (sapB) gene, partial cds.] [NT:similar to


Synechocystis sp. hypothetical protein,] [LE:278] [RE:568] [DI:complement]


>gp:[GI:e1182647:g2632981] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yerL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to 813890.] [NT:alternate gene


name: yedA; similar to hypothetical] [LE:127538] [RE:127828] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_19570253_f2_152
2386
6158
213
70










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1958183_f1_121
2387
6159
648
215
976
2.8e−98










Description


gp:[GI:e1311096:g3320008] [LN:SEHLDGN] [AC:Z49220] [GN:agrB]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:Staphylococcus


epidermidis hld and agr[A,B,C,D] genes.] [LE:759] [RE:1343] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1972278_f3_306
2388
6160
300
99
316
2.4e−28










Description


sp:[LN:GSAB_BACSU] [AC:P71084] [GN:GSAB] [OR:BACILLUS SUBTILIS] [EC:5.4.3.8]


[DE:(GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE) (GSA-AT)] [SP:P71084]


[DB:swissprot] >gp:[GI:e281581:g1673394] [LN:BSZ82044] [AC:Z82044]


[PN:glutamate-1-semialdehyde aminotransferase] [GN:gsaB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis 25 kb genomic DNA segment (from


sspE to katA).] [SP:P71084] [LE:5984] [RE:7273] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_1988811_c3_672
2389
6161
1083
360
779
2.1e−77










Description


pir:[LN:A69802] [AC:A69802] [PN:A/G-specific adenine glycosylase homolog


yfhQ] [GN:yfhQ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182852:g2633186]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfhQ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to 1011250.] [NT:similar to A/G-specific adenine


glycosylase] [LE:132342] [RE:133451] [DI:direct] >gp:[GI:d1025399:g2804547]


[LN:D85082] [AC:D85082] [PN:YfhQ] [OR:Bacillus subtilis] [SR:Bacillus


subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, genome sequence,


79 to 81 degree region.] [LE:25233] [RE:26342] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20100206_f2_137
2390
6162
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20344411_c2_508
2391
6163
336
111
440
1.8e−41










Description


sp:[LN:CH10_STAEP] [AC:P48227] [GN:GROES:HSP10] [OR:STAPHYLOCOCCUS


EPIDERMIDIS] [DE:10)] [SP:P48227] [DB:swissprot] >gp:[GI:g535341]


[LN:SEU13618] [AC:U13618] [PN:heat shock protein 10] [GN:hsp10]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:Staphylococcus


epidermidis 9759 heat shock protein 10 (hsp10) and heat shock protein 60


(hsp60) genes, complete cds.] [LE:105] [RE:389] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20348427_c2_578
2392
6164
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_2037838_f2_223
2393
6165
249
82
122
8.8e−08










Description


pir:[LN:A71136] [AC:A71136] [PN:hypothetical protein PH0853] [GN:PH0853]


[CL:isoleucine--tRNA ligase] [OR:Pyrococcus horikoshii] [DB:pir2]


>gp:[GI:d1030890:g3257264] [LN:AP000003]


[AC:AP000003:AB009484:AB009485:AB009486:AB009487:AB009488:AB009489]


[PN:134aa long hypothetical protein] [GN:PH0853] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 544001–777000 nt. position(3/7).] [LE:216446]


[RE:216850] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20414052_f1_49
2394
6166
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20735686_f1_87
2395
6167
957
318
853
3.0e−85










Description


sp:[LN:YYBQ_BACSU] [AC:P37487] [GN:YYBQ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 34.0 KD PROTEIN IN COTF-TETB INTERGENIC REGION] [SP:P37487]


[DB:swissprot] >pir:[LN:S65980] [AC:S65980:D70088] [PN:conserved


hypothetical protein yybQ] [GN:yybQ] [CL:conserved hypothetical protein


MJ0608] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005728:g467340]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:16200]


[RE:17129] [DI:direct] >gp:[GI:e1184781:g2636602] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yybQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [NT:similar to hypothetical proteins] [SP:P37487]


[LE:168132] [RE:169061] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_20881510_c2_510
2396
6168
492
163
216
9.6e−18










Description


gp:[GI:g3688823] [LN:AF084104] [AC:AF084104] [PN:hypothetical protein]


[OR:Bacillus firmus] [DB:genpept-bct2] [DE:Bacillus firmus AcsA (acsA) gene,


partial cds; SspA (sspA), hypothetical protein, maltose transportor


ATP-binding protein (malK), leucine-rich protein transcriptional regulator


(lrpR), hypothetical proteins, ABC transporter ATP-binding protein


(natC), NatA (natA), NatB (natB), and hypothetical protein genes,


complete cds; and SpoIIIJ (spoIIIJ) gene, partial cds.] [NT:Orf15; similar to


transcription regulator YtrA from] [LE:9870] [RE:10229] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_2125637_f3_294
2397
6169
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_21494536_c3_644
2398
6170
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_21516287_f1_17
2399
6171
135
44
100
1.9e−05










Description


pir:[LN:G64564] [AC:G64564] [PN:hypothetical protein HP0359]


[OR:Helicobacter pylori] [DB:pir2] >gp:[GI:g2313473] [LN:AE000553]


[AC:AE000553:AE000511] [PN:H. pylori predicted coding region HP0359]


[GN:HP0359] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 31 of 134 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:250] [RE:315]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_21616078_c1_440
2400
6172
192
63
135
3.7e−09










Description


pir:[LN:C69792] [AC:C69792] [PN:hypothetical protein yebG] [GN:yebG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2239294] [LN:BSU51115] [AC:U51115]


[PN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


CotA (cotA), GabP (gabP), YeaB (yeaB), YeaC (yeaC), YebA (yebA), GMP


synthetase (guaA) genes, complete cds, and AIR carboxylase I (purE) gene,


partial cds.] [NT:yebG] [LE:15312] [RE:15509] [DI:direct]


>gp:[GI:e1182621:g2632955] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yebG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to 813890.] [LE:96901]


[RE:97098] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_21676433_c3_634
2401
6173
1137
378
192
3.3e−12










Description


gp:[GI:e1292355:g3127839] [LN:SC1A6] [AC:AL023496] [PN:hypothetical protein]


[GN:SC1A6.07c] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid 1A6.] [NT:SC1A6.07c, unknown, len: 813]


[LE:7442] [RE:9070] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_22289077_c2_514
2402
6174
546
181










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_22688428_c2_584
2403
6175
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23438461_c1_413
2404
6176
687
228
103
0.029










Description


gp:[GI:g5306158] [LN:AF160864] [AC:AF160864] [PN:orf1386] [GN:orf1386]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf77 (CPGN); ATA initiation] [LE:22317] [RE:26477]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23495437_f2_262
2405
6177
1305
434
1004
3.0e−101










Description


pir:[LN:JC4864] [AC:JC4864] [PN:aspartate transaminase,] [GN:aspAT]


[OR:Bacillus circulans] [EC:2.6.1.1] [DB:pir2] >gp:[GI:e216734:g1147557]


[LN:BCASPAMIN] [AC:X94433] [PN:Aspartate aminotransferase] [OR:Bacillus


circulans subsp. alkalophilus] [DB:genpept-bct1] [EC:2.6.1.1]


[DE:B. circulans aspartate aminotransferase gene.] [LE:367] [RE:1665]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23572125_c2_571
2406
6178
534
177
393
1.7e−36










Description


sp:[LN:YKHA_BACSU] [AC:P49851] [GN:YKHA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 20.1 KD PROTEIN IN HMP 5′REGION (ORF1)] [SP:P49851]


[DB:swissprot] >gp:[GI:d1011919:g1063246] [LN:BAC168TRP2] [AC:D78189]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168trpC2) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis hmp DNA for 7 ORFs, complete cds.]


[NT:low homology to P14 protein of Heamophilus] [LE:241] [RE:780]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23595386_c1_484
2407
6179
627
208
271
1.4e−23










Description


pir:[LN:H70032] [AC:H70032] [PN:glycerate dehydrogenase homolog yvcT]


[GN:yvcT] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186156:g2635981]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvcT] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21): from 3399551 to 3609060.] [NT:similar to glycerate dehydrogenase]


[LE:162076] [RE:163053] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23600175_f2_274
2408
6180
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23629202_c1_433
2409
6181
381
126
598
3.2e−58










Description


sp:[LN:BLAI_STAAU] [AC:P18415] [GN:BLAI:PENI] [OR:STAPHYLOCOCCUS AUREUS]


[DE:REPRESSOR PROTEIN)] [SP:P18415] [DB:swissprot] >pir:[LN:S11782]


[AC:S11782:S34446] [PN:regulatory protein blaI] [GN:blaI] [CL:regulatory


protein blaI] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46758]


[LN:SATN552] [AC:X52734] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus Tn552 transposable element.] [NT:blaI protein (AA 1–126)]


[SP:P18415] [LE:3165] [RE:3545] [DI:complement] >gp:[GI:g152967] [LN:STABLA]


[AC:M62650] [GN:blaI] [FN:putative blaZ repressor] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus DNA] [DB:genpept-bct1] [DE:Staphylococcus


aureus blaZ gene, 5′ end; blaR1 gene, complete cds; blaI gene, complete cds;


and binR gene, 5′ end.] [LE:1903] [RE:2283] [DI:direct] >gp:[GI:g152970]


[LN:STABLAIA] [AC:M92376] [PN:beta-lactamase repressor] [GN:BlaI]


[FN:represses the production of the blaZ product] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain RN4) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus beta-lactamase repressor (BlaI) gene, complete


cds.] [NT:no obvious promoters were found in the region] [LE:16] [RE:396]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23672302_f3_302
2410
6182
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23672562_c1_411
2411
6183
297
98
86
0.0034










Description


gp:[GI:e8900:g1335718] [LN:PFRESAR1] [AC:X05182] [PN:ring-infected


eryrthrocyte surface antigen] [GN:RESA] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv1] [DE:P. falciparum FC27


Ag46 RESA mRNA for ring-infected eryrthrocyte surface antigen.] [SP:P13830]


[LE:<1] [RE:>955] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23727212_f2_175
2412
6184
303
100
87
0.00045










Description


pir:[LN:B69818] [AC:B69818] [PN:conserved hypothetical protein yhaH]


[GN:yhaH] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183002:g2633336]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhaH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:similar to hypothetical proteins from B.


subtilis] [LE:73870] [RE:74226] [DI:complement] >gp:[GI:e325179:g2226119]


[LN:BSY14077] [AC:Y14077] [PN:Hypothetical protein] [GN:yhaH] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 10.6 Kb chromosomal DNA:


glyB-prsA region.] [LE:6687] [RE:7043] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23727250_f3_362
2413
6185
1395
464
1167
1.6e−118










Description


sp:[LN:DHA2_BACSU] [AC:P39616] [GN:YWDH:IPA-58R] [OR:BACILLUS SUBTILIS]


[EC:1.2.1.3] [DE:PROBABLE ALDEHYDE DEHYDROGENASE YWDH,] [SP:P39616]


[DB:swissprot] >pir:[LN:S39713] [AC:S39713:C70054] [PN:aldehyde


dehydrogenase homolog ywdH:protein ipa-58r] [GN:ywdH] [CL:aldehyde


dehydrogenase (NAD+):aldehyde dehydrogenase homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g413982] [LN:BSGENR] [AC:X73124] [GN:ipa-58r] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).]


[SP:P39616] [LE:59908] [RE:61281] [DI:complement] >gp:[GI:e1186295:g2636331]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:ywdH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21): from 3798401 to 4010550.] [NT:alternate gene name: ipa-58r;


similar to aldehyde] [SP:P39616] [LE:96681] [RE:98054] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_2379658_f2_144
2414
6186
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_23850907_f1_109
2415
6187
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24017175_f2_202
2416
6188
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24218791_f1_86
2417
6189
588
195
525
1.7e−50










Description


pir:[LN:C70008] [AC:C70008] [PN:pyrazinamidase/nicotinamidase homolog yueJ]


[GN:yueJ] [CL:hypothetical protein b1011] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184253:g2635671] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yueJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21): from 3197001 to 3414420.] [NT:similar to


pyrazinamidase/nicotinamidase] [LE:62967] [RE:63518] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24225632_f2_253
2418
6190
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24257827_c2_511
2419
6191
387
128










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24265676_f1_120
2420
6192
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24350953_f2_151
2421
6193
132
43
72
0.017










Description


pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24353382_c3_608
2422
6194
1623
540
2592
1.6e−269










Description


gp:[GI:g535342] [LN:SEU13618] [AC:U13618] [PN:heat shock protein 60]


[GN:hsp60] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:Staphylococcus epidermidis 9759 heat shock protein 10 (hsp10) and heat


shock protein 60 (hsp60) genes, complete cds.] [LE:445] [RE:2064]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24407787_c1_483
2423
6195
354
117
84
0.029










Description


sp:[LN:SERX_YEAST] [AC:P40054] [GN:YER081W] [OR:SACCHAROMYCES CEREVISIAE]


[SR:,BAKER'S YEAST] [EC:1.1.1.95] [DE:(PGDH)] [SP:P40054] [DB:swissprot]


>pir:[LN:S50584] [AC:S50584] [PN:probable phosphoglycerate dehydrogenase,


YER081w] [OR:Saccharomyces cerevisiae] [EC:1.1.1.95] [DB:pir2] [MP:5R]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24415942_c2_516
2424
6196
840
279










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24475252_c2_533
2425
6197
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24475252_f1_2
2426
6198
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_24885938_c3_639
2427
6199
642
213
302
7.4e−27










Description


pir:[LN:B69792] [AC:B69792] [PN:hypothetical protein yebF] [GN:yebF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2239293] [LN:BSU51115] [AC:U51115]


[PN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


CotA (cotA), GabP (gabP), YeaB (yeaB), YeaC (yeaC), YebA (yebA), GMP


synthetase (guaA) genes, complete cds, and AIR carboxylase I (purE) gene,


partial cds.] [NT:yebF] [LE:15046] [RE:15312] [DI:direct]


>gp:[GI:e1182620:g2632954] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yebF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to 813890.] [LE:96635]


[RE:96901] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25428507_c1_457
2428
6200
576
191
109
0.0063










Description


pir:[LN:G71609] [AC:G71609] [PN:hypothetical protein PFB0650w] [GN:PFB0650w]


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845240] [LN:AE001408]


[AC:AE001408:AE001362] [PN:hypothetical protein] [GN:PFB0650w]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 45 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:4458] [RE:11960]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25595387_f1_93
2429
6201
432
143
326
2.1e−29










Description


gp:[GI:g3676415] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf149] [LE:2068] [RE:2484]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25603388_f1_122
2430
6202
1293
430
2112
1.2e−218










Description


gp:[GI:g2981295] [LN:AF012132] [AC:AF012132] [PN:histidine kinase] [GN:agrC]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis agr system including response regulator(agrA), histidine kinase


(agrC), AgrD (agrD), AgrB (agrB) and deltatoxin (hld) genes, complete cds.]


[NT:AgrC; similar to S. aureus and S. lugdunensis AgrC] [LE:975] [RE:2264]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_256265_c2_564
2431
6203
1092
363
538
7.3e−52










Description


pir:[LN:F70045] [AC:F70045] [PN:two-component sensor histidine kinase


homolog yvqE] [GN:yvqE] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1249816:g2832820] [LN:BS43KBDNA] [AC:AJ223978] [PN:YvqE protein]


[GN:yvqE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


42.7 kB DNA fragment from yvsA to yvqA.] [LE:32111] [RE:33193] [DI:direct]


>gp:[GI:e1184388:g2635806] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvqE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21): from 3197001 to 3414420.] [NT:similar to


two-component sensor histidine kinase] [LE:197094] [RE:198176]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25678438_c2_583
2432
6204
474
157
334
3.0e−30










Description


pir:[LN:E70344] [AC:E70344] [PN:conserved hypothetical protein aq_495]


[GN:aq_495] [CL:bacterioferritin comigratory protein:alkyl hydroperoxidase


c22 protein homology] [OR:Aquifex aeolicus] [DB:pir2] >gp:[GI:g2983147]


[LN:AE000692] [AC:AE000692:AE000657] [PN:hypothetical protein] [GN:aq_495]


[OR:Aquifex aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 24 of


109 of the complete genome.] [LE:11182] [RE:11667] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25781392_f1_54
2433
6205
1029
342
225
5.7e−17










Description


pir:[LN:H69815] [AC:H69815] [PN:hypothetical protein ygaE] [GN:ygaE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182859:g2633193] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:ygaE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:137853] [RE:138914] [DI:complement]


>gp:[GI:e281580:g1673393] [LN:BSZ82044] [AC:Z82044] [PN:hypothetical 40.7 kd


protein] [GN:ygaE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


25 kb genomic DNA segment (from sspE to katA).] [LE:4703] [RE:5764]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_25790718_c2_541
2434
6206
315
104
349
7.7e−32










Description


pir:[LN:B69794] [AC:B69794] [PN:hypothetical protein yerC] [GN:yerC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g2465565] [LN:AF011544]


[AC:AF011544] [PN:YecD] [GN:yecD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis


phosphoribosylaminoimidazole-carboxamideformyltransferase (purH-J) gene,


partial cds, phosphoribosylglycinamide synthetase (purD), YecA (yecA),


putative adenine deaminase (yecB), YecC (yecC), and YecD (yecD)


genes, complete cds, and putative glutamate synthase (yecE) gene,


partial cds.] [NT:no apparent homology has been identified] [LE:6547]


[RE:6861] [DI:direct] >gp:[GI:e1182638:g2632972] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yerC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [LE:115237] [RE:115551] [DI:direct]


>gp:[GI:e1167973:g2577962] [LN:BSYERABCD] [AC:Y15254] [PN:YerC protein]


[GN:yerC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


13 kB DNA fragment, from yerA to sapB gene.] [LE:2882] [RE:3196] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26177163_c1_466
2435
6207
1272
423
971
9.5e−98










Description


sp:[LN:AMPS_BACSU] [AC:P39762] [GN:AMPS] [OR:BACILLUS SUBTILIS]


[EC:3.4.11.—] [DE:AMINOPEPTIDASE AMPS,] [SP:P39762] [DB:swissprot]


>pir:[LN:C69585] [AC:C69585] [PN:aminopeptidase ampS] [GN:ampS]


[CL:Bacillus aminopeptidase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185035:g2633816] [LN:BSUB0008] [AC:Z99111:AL009126]


[PN:aminopeptidase] [GN:ampS] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:3.4.11.—] [DE:Bacillus subtilis complete genome (section 8 of 21): from


1394791 to 1603020.] [SP:P39762] [LE:119612] [RE:120844] [DI:complement]


>gp:[GI:g3282130] [LN:AF012285] [AC:AF012285:AF012284:U51911]


[PN:aminopeptidase] [GN:ampS] [OR:Bacillus subtilis] [DB:genpept-bct2]


[DE:Bacillus subtilis mobA-nprE gene region.] [NT:similar to ampS gene with


GenBan Accession Number] [LE:20100] [RE:21332] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26205151_f2_147
2436
6208
156
51
117
3.0e−07










Description


pir:[LN:B71245] [AC:B71245] [PN:hypothetical protein PH0220] [GN:PH0220]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030232:g3256606]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:171aa long hypothetical protein] [GN:PH0220] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:192864]


[RE:193379] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26209510_c1_478
2437
6209
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26209577_f3_358
2438
6210
1068
355
892
2.2e−89










Description


pir:[LN:C69811] [AC:C69811] [PN:nitric-oxide synthase homolog yflM]


[GN:yflM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182753:g2633087]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yflM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to 1011250.] [NT:similar to nitric-oxide synthase]


[LE:33422] [RE:34432] [DI:direct] >gp:[GI:d1023169:g2443235] [LN:D86417]


[AC:D86417] [PN:YflM] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb genomic


DNA, 70–73 degree region, complete cds.] [LE:14090] [RE:15100]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26212875_c3_616
2439
6211
318
105










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26354787_c2_499
2440
6212
744
247
121
0.00043










Description


gp:[GI:g3549261] [LN:AF057019] [AC:AF057019] [PN:interaptin] [GN:abpD]


[OR:Dictyostelium discoideum] [DB:genpept-inv2] [DE:Dictyostelium discoideum


interaptin (abpD) gene, complete cds.] [LE:1861:2796:7392]


[RE:2378:7315:7570] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26369052_f1_91
2441
6213
141
46
101
1.5e−05










Description


gp:[GI:g3676415] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf149] [LE:2068] [RE:2484]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26593808_f2_159
2442
6214
981
326
753
1.2e−74










Description


pir:[LN:H69801] [AC:H69801] [PN:hypothetical protein yfhP] [GN:yfhP]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182851:g2633185] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfhP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:131143] [RE:132126] [DI:complement]


>gp:[GI:d1025398:g2804546] [LN:D85082] [AC:D85082] [PN:YfhP] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:24034] [RE:25017]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26689703_c3_679
2443
6215
453
150
562
2.1e−54










Description


sp:[LN:FUR3_BACSU] [AC:P71086] [GN:YGAG] [OR:BACILLUS SUBTILIS] [DE:FERRIC


UPTAKE REGULATION PROTEIN HOMOLOG 3] [SP:P71086] [DB:swissprot]


>pir:[LN:B69816] [AC:B69816] [PN:transcription regulator Fur family homolog


ygaG] [GN:ygaG] [CL:ferric uptake regulator] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182862:g2633196] [LN:BSUB0005] [AC:Z99108:AL009126]


[GN:ygaG] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 5 of 21): from 802821 to 1011250.]


[NT:similar to transcriptional regulator (Fur family)] [SP:P71086]


[LE:141173] [RE:141610] [DI:direct] >gp:[GI:e281583:g1673396] [LN:BSZ82044]


[AC:Z82044] [PN:hypothetical 16.4 kd protein] [GN:ygaG] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis 25 kb genomic DNA segment (from


sspE to katA).] [NT:homology to ferric uptake regulation protein]


[SP:P71086] [LE:8023] [RE:8460] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26756500_c3_654
2444
6216
777
258
721
2.9e−71










Description


pir:[LN:E69810] [AC:E69810] [PN:methionine aminopeptidase homolog yflG]


[GN:yflG] [CL:Escherichia coli methionyl aminopeptidase] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182759:g2633093] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yflG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to methionine aminopeptidase] [LE:36423]


[RE:37172] [DI:complement] >gp:[GI:d1023163:g2443229] [LN:D86417]


[AC:D86417] [PN:YflG] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb genomic


DNA, 70–73 degree region, complete cds.] [LE:11350] [RE:12099] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_26757312_f3_321
2445
6217
1197
398
577
5.3e−56










Description


gp:[GI:e1423916:g4584097] [LN:BAJ10131] [AC:AJ010131] [GN:yfkH] [OR:Bacillus


cereus] [DB:genpept-bct1] [DE:Bacillus cereus yfkH gene and partial ykvW,


bc333c genes.] [LE:863] [RE:1732] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_285808_f2_146
2446
6218
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_29307187_c3_687
2447
6219
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_29500277_f3_392
2448
6220
171
56
169
9.2e−13










Description


gp:[GI:g1196510] [LN:MSGTCWPA] [AC:M15467] [PN:unknown protein]


[OR:Mycobacterium tuberculosis] [SR:Mycobacterium tuberculosis (strain


Erdman) DNA] [DB:genpept-bct1] [DE:M. tuberculosis 65 kDa antigen (cell wall


protein a) gene.] [NT:ORF F175; putative] [LE:242] [RE:769] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_2992943_c1_425
2449
6221
624
207
382
2.5e−35










Description


gp:[GI:g4981569] [LN:AE001764] [AC:AE001764:AE000512] [PN:ABC transporter,


ATP-binding protein] [GN:TM1028] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 76 of 136 of the complete genome.]


[NT:similar to GB:AE000782 percent identity: 60.48;] [LE:5922] [RE:6803]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_30265640_c3_693
2450
6222
1080
359
684
2.4e−67










Description


pir:[LN:E71373] [AC:E71373] [PN:probable regulatory protein (pfoS/R)]


[GN:TP0038] [OR:Treponema pallidum subsp. pallidum] [SR:, syphilis


spirochete] [DB:pir2] >gp:[GI:g3322295] [LN:AE001189] [AC:AE001189:AE000520]


[PN:regulatory protein (pfoS/R)] [GN:TP0038] [OR:Treponema pallidum]


[DB:genpept-bct2] [DE:Treponema pallidum section 5 of 87 of the complete


genome.] [NT:similar to GP:1354775 percent identity: 100.00;] [LE:1177]


[RE:2229] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_30506437_c2_517
2451
6223
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_30677268_c1_419
2452
6224
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_31273377_f1_113
2453
6225
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3128452_c1_438
2454
6226
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_31289637_c2_545
2455
6227
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_31534456_c3_689
2456
6228
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_32037826_c1_451
2457
6229
1476
491
1119
2.0e−113










Description


pir:[LN:E69793] [AC:E69793] [PN:RNA methyltransferase homolog yefA]


[GN:yefA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182653:g2632987]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:yefA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:alternate gene name: yerS; similar to


RNA] [LE:136409] [RE:137788] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3251577_c3_642
2458
6230
2190
729
3095
0.0










Description


sp:[LN:PCRA_STAAU] [AC:Q53727] [GN:PCRA] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.6.1.—] [DE:ATP-DEPENDENT HELICASE PCRA,] [SP:Q53727] [DB:swissprot]


>pir:[LN:S39923] [AC:S39923:S27667] [PN:DNA helicase pcrA] [GN:pcrA]


[CL:helicase II] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g153062]


[LN:STAPCRA] [AC:M63176] [PN:helicase] [GN:pcrA] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain SA20) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus helicase required for T181 replication (pcrA)gene,


complete cds.] [LE:943] [RE:2970] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_32634387_f2_133
2459
6231
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_32680_c3_692
2460
6232
936
311
776
4.4e−77










Description


sp:[LN:STSP_STAAU] [AC:P04188] [OR:STAPHYLOCOCCUS AUREUS] [EC:3.4.21.19]


[DE:PROTEINASE) (V8 PROTEINASE) (ENDOPROTEINASE GLU-C)] [SP:P04188]


[DB:swissprot] >pir:[LN:PRSASK] [AC:A26812:A00966] [PN:glutamyl


endopeptidase, precursor:staphylococcal serine proteinase]


[CL:staphylococcal serine proteinase] [OR:Staphylococcus aureus]


[EC:3.4.21.19] [DB:pir1] >gp:[GI:g46687] [LN:SASP] [AC:Y00356]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus V8


serine protease gene.] [NT:preproenzyme (AA −68 to 268)] [SP:P04188]


[LE:354] [RE:1364] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_32689162_f3_397
2461
6233
807
268
1384
1.6e−141










Description


gp:[GI:g2981299] [LN:AF012132] [AC:AF012132] [PN:unknown] [GN:orf5]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [DE:Staphylococcus


epidermidis agr system including response regulator(agrA), histidine kinase


(agrC), AgrD (agrD), AgrB (agrB) and deltatoxin (hld) genes, complete cds.]


[NT:similar to S. aureus and S. lugdunensis orf5] [LE:3778] [RE:4572]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_32696088_c2_580
2462
6234
1749
582
1899
4.3e−196










Description


pir:[LN:G69815] [AC:G69815] [PN:ABC transporter (ATP-binding protein)


homolog ygaD] [GN:ygaD] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182858:g2633192] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:ygaD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:136007] [RE:137776] [DI:direct] >gp:[GI:e281579:g1673392]


[LN:BSZ82044] [AC:Z82044] [PN:unidentified transporter-ATP binding]


[GN:ygaD] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis 25 kb


genomic DNA segment (from sspE to katA).] [LE:2857] [RE:4626] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_33237786_f3_316
2463
6235
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3330167_f3_398
2464
6236
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_33456965_c2_592
2465
6237
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_33463542_c1_487
2466
6238
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3361326_c2_588
2467
6239
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_33631292_c1_461
2468
6240
414
137
84
0.048










Description


gp:[GI:g2182758] [LN:BBU42599] [AC:U42599] [OR:Borrelia burgdorferi]


[SR:Lyme disease spirochete] [DB:genpept-bct1] [DE:Borrelia burgdorferi


plasmid cp18, OspE (ospE) gene, partial cds.] [NT:OrfE] [LE:1395] [RE:1967]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_33631626_c1_489
2469
6241
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3392952_c1_410
2470
6242
591
196
195
1.6e−15










Description


gp:[GI:e247149:g1926347] [LN:LBPHIG1E] [AC:X98106] [GN:Rorf172]


[OR:Bacteriophage phigle] [DB:genpept-phg] [DE:Lactobacillus bacteriophage


phigle complete genomic DNA.] [LE:29618] [RE:30136] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34023427_c3_651
2471
6243
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34164192_c3_640
2472
6244
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34275325_c2_576
2473
6245
1521
506
238
5.0e−17










Description


sp:[LN:TAGH_BACSU] [AC:P42954] [GN:TAGH] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID TRANSLOCATION ATP-BINDING PROTEIN TAGH] [SP:P42954] [DB:swissprot]


>pir:[LN:S69203] [AC:S69203:A69721] [PN:teichoic acid translocation


ATP-binding protein tagH] [GN:tagH] [CL:ATP-binding cassette homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g755153] [LN:BSU13832] [AC:U13832]


[PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 highly


hydrophobic integral membrane protein(tagG) gene and ATP-binding protein


(tagH) gene, complete cds.] [LE:1134] [RE:2717] [DI:direct]


>gp:[GI:e1184476:g2636096] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 19 of 21): from 3597091 to 3809700.] [SP:P42954] [LE:75534]


[RE:77117] [DI:complement] >gp:[GI:e1184476:g2636096] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid


translocation] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [SP:P42954]


[LE:75534] [RE:77117] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34383400_c3_618
2474
6246
582
193
78
0.010










Description


gp:[GI:g4726117] [LN:ATAC006436] [AC:AC006436] [GN:F13J11.13]


[OR:Arabidopsis thaliana] [SR:thale cress] [DB:genpept-pln2] [DE:Arabidopsis


thaliana chromosome II BAC F13J11 genomic sequence, complete sequence.]


[NT:unknown protein] [LE:50474] [RE:50725] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34557262_c2_585
2475
6247
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34572177_c2_513
2476
6248
735
244
147
1.5e−08










Description


pir:[LN:S42928] [AC:S42928] [PN:probable membrane-spanning protein]


[OR:Staphylococcus epidermidis] [DB:pir2] >gp:[GI:g459263] [LN:SESTPSMP]


[AC:Z30586] [PN:membrane spanning protein (putative)] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:S. epidermidis (968) genes for potential


ABC transporter and potential membrane spanning protein.] [LE:896] [RE:1666]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_34652177_c3_656
2477
6249
648
215
546
1.0e−52










Description


pir:[LN:E70045] [AC:E70045] [PN:two-component response regulator [YvqE]


homolog yvqC] [GN:yvqC] [CL:regulatory protein comA:response regulator


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1249817:g2832821]


[LN:BS43KBDNA] [AC:AJ223978] [PN:YvqC protein] [GN:yvqC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 42.7 kB DNA fragment from


yvsA to yvqA.] [LE:33171] [RE:33806] [DI:direct] >gp:[GI:e1184387:g2635805]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvqC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21): from 3197001 to 3414420.] [NT:similar to two-component response


regulator [YvqE]] [LE:196481] [RE:197116] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_35428128_c3_635
2478
6250
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_35443785_c2_562
2479
6251
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_35885_f3_383
2480
6252
504
167










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36119093_c3_643
2481
6253
2001
666
2102
1.3e−217










Description


pir:[LN:F69794] [AC:F69794] [PN:DNA ligase (NAD+),] [GN:yerG]


[CL:polydeoxyribonucleotide synthase (NAD+)] [OR:Bacillus subtilis]


[EC:6.5.1.2] [DB:pir1] >gp:[GI:e1182642:g2632976] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yerG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:similar to DNA ligase] [LE:120419] [RE:122425]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36195250_f3_359
2482
6254
822
273
375
1.4e−34










Description


sp:[LN:PHEA_METJA] [AC:Q58054] [GN:PHEA:MJ0637] [OR:METHANOCOCCUS


JANNASCHII] [EC:4.2.1.51] [DE:PROBABLE PREPHENATE DEHYDRATASE, (PDT)]


[SP:Q58054] [DB:swissprot] >pir:[LN:E64379] [AC:E64379] [PN:prephenate


dehydratase,] [CL:prephenate dehydratase:prephenate dehydratase homology]


[OR:Methanococcus jannaschii] [EC:4.2.1.51] [DB:pir2] [MP:REV567914–567096]


>gp:[GI:g1591349] [LN:U67511] [AC:U67511:L77117] [PN:chorismate


mutase/prephenate dehydratase (pheA)] [GN:MJ0637] [OR:Methanococcus


jannaschii] [DB:genpept-bct2] [DE:Methanococcus jannaschii section 53 of 150


of the complete genome.] [NT:similar to SP:P43909 PID:683585 percent


identity:] [LE:7667] [RE:8485] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36219692_c3_648
2483
6255
561
186
133
2.0e−08










Description


pir:[LN:A36886] [AC:A36886] [PN:surface protein PAg negative regulator par]


[GN:par] [OR:Streptococcus sobrinus] [DB:pir2] >gp:[GI:d1003084:g425488]


[LN:STRREPRESP] [AC:D13323] [PN:repressor protein] [GN:par]


[OR:Streptococcus sobrinus] [SR:Streptococcus sobrinus (strain MT3791) DNA,


clone pPG11] [DB:genpept-bct1] [DE:Streptococcus sobrinus gene for repressor


protein of surface protein antigen gene (pag), complete cds.] [NT:This ORF2


starts at the GTG codon (position 1162)] [LE:1162] [RE:1773] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36220000_c2_525
2484
6256
1047
348
557
7.0e−54










Description


pir:[LN:D69856] [AC:D69856] [PN:conserved hypothetical protein ykgB]


[GN:ykgB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181502:g2632022]


[LN:BSAJ2571] [AC:AJ002571] [PN:YkgB] [GN:ykgB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment


between xlyA and ykoR.] [LE:22000] [RE:23049] [DI:complement]


>gp:[GI:e1183321:g2633655] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykgB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21): from 1194391 to 1411140.] [NT:similar to


hypothetical proteins] [LE:174949] [RE:175998] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36221013_f2_135
2485
6257
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36336012_c3_664
2486
6258
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36367302_c3_600
2487
6259
564
187
122
2.7e−06










Description


sp:[LN:Y359_METJA] [AC:Q57805] [GN:MJ0359] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0359] [SP:Q57805] [DB:swissprot] >pir:[LN:G64344]


[AC:G64344] [PN:hypothetical protein MJ0359] [OR:Methanococcus jannaschii]


[DB:pir2] [MP:REV327449–326805] >gp:[GI:g1591068] [LN:U67489]


[AC:U67489:L77117] [PN:M. jannaschii predicted coding region MJ0359]


[GN:MJ0359] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 31 of 150 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:2497] [RE:3141]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36457341_c2_593
2488
6260
135
44
81
0.019










Description


pir:[LN:S75730] [AC:S75730:S50064] [PN:8-amino-7-oxononanoate


synthase,:7-keto-8-aminopelargonic acid synthetase:protein


slr0917:7-keto-8-aminopelargonic acid synthetase:protein slr0917] [GN:bioF]


[CL:5-aminolevulinate synthase] [OR:Synechocystis sp.] [SR:PCC 6803, , PCC


6803] [SR:PCC 6803,] [EC:2.3.1.47] [DB:pir2] >gp:[GI:d1011116:g1673311]


[LN:SYCSLLE] [AC:D64003:AB001339] [PN:7-keto-8-aminopelargonic acid


synthetase] [GN:bioF] [OR:Synechocystis sp.] [SR:Synechocystis sp.


(strain:PCC6803) DNA] [DB:genpept-bct1] [DE:Synechocystis sp. PCC6803


complete genome, 22/27, 2755703–2868766.] [NT:ORF_ID:slr0917] [LE:35986]


[RE:37299] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_36522175_f1_69
2489
6261
1557
518
2240
3.2e−232










Description


gp:[GI:g2565311] [LN:AF024571] [AC:AF024571] [PN:high affinity proline


permease] [GN:putP] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus high affinity proline permease (putP)


gene, complete cds.] [LE:339] [RE:1832] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_39077_f2_270
2490
6262
717
238
1223
1.9e−124










Description


gp:[GI:g2981294] [LN:AF012132] [AC:AF012132] [PN:response regulator]


[GN:agrA] [OR:Staphylococcus epidermidis] [DB:genpept-bct2]


[DE:Staphylococcus epidermidis agr system including response


regulator (agrA), histidine kinase (agrC), AgrD (agrD), AgrB (agrB) and


deltatoxin (hld) genes, complete cds.] [NT:AgrA; similar to S. aureus and S.


lugdunensis AgrA] [LE:242] [RE:958] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3939013_c2_573
2491
6263
210
69
109
2.1e−06










Description


pir:[LN:C69807] [AC:C69807] [PN:hypothetical protein yfjT] [GN:yfjT]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182787:g2633121] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfjT] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:65959] [RE:66144] [DI:direct]


>gp:[GI:d1024269:g2626812] [LN:D83967] [AC:D83967] [PN:YfjT] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 74 degree region.] [LE:1777] [RE:1962]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_3942015_c1_471
2492
6264
528
175
790
1.4e−78










Description


sp:[LN:YLY1_STAAU] [AC:Q53719] [OR:STAPHYLOCOCCUS AUREUS] [DE:HYPOTHETICAL


18.6 KD PROTEIN IN LYTA 3′REGION (ORF1)] [SP:Q53719] [DB:swissprot]


>gp:[GI:g310602] [LN:STAORFPHI] [AC:L19300] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (library: NCTC 8325) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus DNA sequence encoding three ORFs, complete cds;


prophage phi-11 sequence homology, 5′ flank.] [LE:1798] [RE:2313]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4021888_c3_615
2493
6265
669
222
83
0.0039










Description


pir:[LN:D71114] [AC:D71114] [PN:hypothetical protein PH0683] [GN:PH0683]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030717:g3257091]


[LN:AP000003]


[AC:AP000003:AB009484:AB009485:AB009486:AB009487:AB009488:AB009489]


[PN:107aa long hypothetical protein] [GN:PH0683] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 544001–777000 nt. position(3/7).] [LE:63024]


[RE:63347] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4062500_c2_507
2494
6266
1401
466
502
3.3e−47










Description


gp:[GI:e1314011:g3393011] [LN:SAA224764] [AC:AJ224764] [PN:Clumping factor


B] [GN:clfB] [FN:binds fibrinogen] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus strain Newman clumping factor B


(clfB) gene.] [LE:28] [RE:2769] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4072936_c1_453
2495
6267
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4093753_f3_387
2496
6268
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4095277_c3_627
2497
6269
1827
608
2760
2.5e−287










Description


pir:[LN:S11783] [AC:S11783:S27371:S34445] [PN:bla regulator protein


blaR1:probable beta-lactam receptor signal transducer protein] [GN:blaR1]


[CL:mecR1 protein:beta-lactamase OXA2 homology] [OR:Staphylococcus aureus]


[DB:pir2] >gp:[GI:g152966] [LN:STABLA] [AC:M62650] [GN:blaR1] [FN:putative


beta-lactam receptor-signal] [OR:Staphylococcus aureus] [SR:Staphylococcus


aureus DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus blaZ gene, 5′ end;


blaR1 gene, complete cds; blaI gene, complete cds; and binR gene, 5′ end.]


[LE:156] [RE:1913] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_409556_f1_10
2498
6270
135
44
112
2.5e−06










Description


pir:[LN:D71245] [AC:D71245] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4101517_f1_100
2499
6271
1068
355










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4179637_c3_622
2500
6272
387
128
207
8.6e−17










Description


sp:[LN:TRAC_STAAU] [AC:P06698] [GN:TNPC] [OR:STAPHYLOCOCCUS AUREUS]


[DE:TRANSPOSASE FOR TRANSPOSON TN554] [SP:P06698] [DB:swissprot]


>pir:[LN:C24584] [AC:C24584] [PN:transposition regulatory protein tnpC]


[GN:tnpC] [CL:transposition regulatory protein tnpC] [OR:Staphylococcus


aureus] [DB:pir2] >gp:[GI:g43729] [LN:ISTN554] [AC:X03216:K02987] [PN:pot.


tnpC protein] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus transposon Tn554.] [NT:(aa 1–125)] [SP:P06698]


[LE:3115] [RE:3492] [DI:direct] >gp:[GI:d1046009:g5360833] [LN:D86934]


[AC:D86934] [PN:transposaseC] [GN:tnpC] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N047] [LE:32364] [RE:32741] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_430325_c1_456
2501
6273
1383
460
649
1.3e−63










Description


gp:[GI:g3820539] [LN:AF080002] [AC:AF080002] [PN:UDP-N-acetylmuramyl


tripeptide synthetase MurC] [GN:murC] [OR:Heliobacillus mobilis]


[DB:genpept-bct2] [DE:Heliobacillus mobilis exopolyphosphatase Ppx (ppx)


gene, partial cds; cobyric acid synthase CobQ (cobQ),


UDP-N-acetylmuramyltripeptide synthetase MurC (murC), glutamyl tRNA


reductase HemA (hemA), photosynthesis gene cluster, complete sequence, stage


IIsporulation protein E Sp2E (sp2E), cell cycle protein MesJ (mesJ), and


ATP-dependent zinc metallopeptidase FtsH (ftsH) genes, complete cds; and


nucleoside diphosphate kinase B NdkB (ndkB) gene, partial cds.] [LE:2000]


[RE:3367] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4329635_f2_164
2502
6274
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4689130_f2_272
2503
6275
306
101
81
0.029










Description


pir:[LN:A58932] [AC:A58932] [PN:cytochrome C-type biogenesis protein CCMF]


[GN:yejR:ccmF] [OR:mitochondrion Cyanidioschyzon merolae] [DB:pir2]


>gp:[GI:d1037513:g4115789] [LN:D89861] [AC:D89861] [PN:cytochrome C-type


biogenesis protein CCMF] [GN:yejR or ccmF] [OR:Mitochondrion Cyanidioschyzon


merolae] [SR:Cyanidioschyzon merolae (strain:10D) mitochondrion DNA]


[DB:genpept-pln1] [DE:Cyanidioschyzon merolae mitochondrial DNA, complete


sequence.] [LE:16296] [RE:18158] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4722265_c1_472
2504
6276
858
285
416
6.1e−39










Description


pir:[LN:H69800] [AC:H69800] [PN:hypothetical protein yfhG] [GN:yfhG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182842:g2633176] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfhG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:122320] [RE:123114] [DI:direct]


>gp:[GI:d1025389:g2804537] [LN:D85082] [AC:D85082] [PN:YfhG] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:15211] [RE:16005]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4726566_f2_189
2505
6277
582
193
187
3.8e−13










Description


gp:[GI:g4981093] [LN:AE001732] [AC:AE001732:AE000512] [PN:DNA polymerase


III, alpha subunit] [GN:TM0576] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 44 of 136 of the complete genome.]


[NT:similar to GB:M22996 SP:P13267 GB:M33543 GB:S55653] [LE:5720] [RE:9823]


[DI:direct] >gp:[GI:g3930535] [LN:AF065313] [AC:AF065313] [PN:DNA polymerase


III] [GN:polC] [OR:Thermotoga maritima] [DB:genpept-bct2] [DE:Thermotoga


maritima DNA polymerase III (polC) gene, complete cds.] [NT:family C DNA


polymerase] [LE:235] [RE:4338] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4728377_f2_171
2506
6278
1146
381
544
1.7e−52










Description


pir:[LN:F69807] [AC:F69807] [PN:hypothetical protein yfkB] [GN:yfkB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182785:g2633119] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfkB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:64694] [RE:65155] [DI:complement]


>gp:[GI:d1024271:g2626814] [LN:D83967] [AC:D83967] [PN:YfkB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:AC327) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 74 degree region.] [LE:2766] [RE:3227]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4876387_f3_376
2507
6279
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4881313_c1_475
2508
6280
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_4900443_c1_449
2509
6281
1440
479
2460
1.5e−255










Description


sp:[LN:YZDD_BACSU] [AC:Q45486] [GN:YZDD] [OR:BACILLUS SUBTILIS]


[DE:PET112-LIKE PROTEIN] [SP:Q45486] [DB:swissprot] >gp:[GI:g1354211]


[LN:BSU49790] [AC:U49790] [PN:PET112-like protein] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis PET112-like protein gene, complete


cds.] [LE:433] [RE:1860] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_5133500_f1_48
2510
6282
480
159
358
8.6e−33










Description


pir:[LN:E69808] [AC:E69808] [PN:protein-tyrosine phosphatase homolog yfkJ]


[GN:yfkJ] [CL:protein-tyrosine-phosphatase, low molecular weight]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182778:g2633112] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfkJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to protein-tyrosine phosphatase]


[LE:58691] [RE:59161] [DI:direct] >gp:[GI:d1024279:g2626822] [LN:D83967]


[AC:D83967] [PN:YfkJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 74


degree region.] [LE:8760] [RE:9230] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_5167268_c3_649
2511
6283
1080
359
613
8.2e−60










Description


sp:[LN:DINP_ECOLI] [AC:Q47155:Q47683] [GN:DINP] [OR:ESCHERICHIA COLI]


[DE:DNA-DAMAGE-INDUCIBLE PROTEIN P] [SP:Q47155:Q47683] [DB:swissprot]


>pir:[LN:H64747] [AC:H64747] [PN:DNA-damage-inducible protein dinP]


[GN:dinP] [CL:umuC protein] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:d1008174:g984587] [LN:ECODINJ] [AC:D38582] [PN:DinP] [OR:Escherichia


coli] [SR:Escherichia coli (sub_strain W3110, strain K-12) (library:


Kohara'] [DB:genpept-bct1] [DE:Escherichia coli genes for 'YafH, YafI, YafJ,


YafK, YafQ, DinJ, YafL, YafM, FhiA, MbhA, DinP, YafN, YafO and YafP.]


[NT:hypothetical; similarity to YLW6_CAEEL (P34409),] [LE:8540] [RE:9595]


[DI:direct] >gp:[GI:d1041669:g4902967] [LN:ECOTSF] [AC:D83536]


[PN:DNA-damage-inducible protein p.] [GN:dinP] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA] [DB:genpept-bct1] [DE:Escherichia


coli genomic DNA. (4.1–6.1 min).] [NT:ORF_ID:o127#9; similar to PIR


Accession Number] [LE:60446] [RE:61501] [DI:direct] >gp:[GI:g1552799]


[LN:ECU70214] [AC:U70214] [PN:DinP] [GN:dinP] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:Escherichia coli chromosome minutes 4–6.] [LE:81973]


[RE:83028] [DI:direct] >gp:[GI:g1786425] [LN:AE000131] [AC:AE000131:U00096]


[PN:damage-inducible protein P; putative tRNA] [GN:dinP] [FN:putative


enzyme; Not classified] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 21 of 400 of the complete genome.]


[NT:o351; 100 pct identical to GB: ECODINJ_11] [LE:7487] [RE:8542]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_5269400_f3_291
2512
6284
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_570327_c1_424
2513
6285
171
56
52
0.026










Description


pir:[LN:S68156] [AC:S68156] [PN:NADH dehydrogenase (ubiquinone), chain 3]


[GN:ND3] [CL:NADH dehydrogenase (ubiquinone) chain 3] [OR:mitochondrion


Dictyostelium discoideum] [EC:1.6.5.3] [DB:pir2] >gp:[GI:d1041830:g4958885]


[LN:AB000109] [AC:AB000109] [PN:NADH dehydrogenase subunit 3] [GN:nad3]


[OR:Mitochondrion Dictyostelium discoideum] [SR:Dictyostelium discoideum


(strain:AX3, partially X22 (48172–5151] [DB:genpept-inv1] [EC:1.6.5.3]


[DE:Dictyostelium discoideum mitochondrial DNA, complete sequence.]


[LE:24783] [RE:25145] [DI:direct] >gp:[GI:d1004450:g699592] [LN:DDID16466]


[AC:D16466] [PN:NADH dehydrogenase subunit 3] [GN:nad3] [OR:Mitochondrion


Dictyostelium discoideum] [SR:Dictyostelium discoideum (strain:AX3)


mitochondrion DNA] [DB:genpept-inv1] [EC:1.6.5.3] [DE:Dictyostelium


discoideum mitochondrial DNA.] [LE:7866] [RE:8228] [DI:direct]


>gp:[GI:d1004450:g699592] [LN:DDID16466] [AC:D16466] [PN:NADH dehydrogenase


subunit 3] [GN:nad3] [OR:Mitochondrion Dictyostelium discoideum]


[SR:Dictyostelium discoideum (strain:AX3) mitochondrion DNA] [DB:genpept]


[EC:1.6.5.3] [DE:Dictyostelium discoideum mitochondrial DNA.] [LE:7866]


[RE:8228] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_5860052_f3_388
2514
6286
435
144
107
3.4e−06










Description


pir:[LN:H71190] [AC:H71190] [PN:hypothetical protein PH1800] [GN:PH1800]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031862:g3258236]


[LN:AP000007]


[AC:AP000007:AB009464:AB009465:AB009521:AB009522:AB009523:AB009524]


[PN:133aa long hypothetical protein] [GN:PH1800] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1485001–1738505 nt. position(7/7).] [LE:80658]


[RE:81059] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_5913882_f2_167
2515
6287
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_6053308_c2_538
2516
6288
903
300
815
3.2e−81










Description


sp:[LN:NADE_ECOLI] [AC:P18843:P78235] [GN:NADE:EFG:NTRL] [OR:ESCHERICHIA


COLI] [EC:6.3.5.1] [DE:PROTEIN)] [SP:P18843:P78235] [DB:swissprot]


>pir:[LN:D64933] [AC:D64933:A26928] [PN:NAD+ synthase


(glutamine-hydrolyzing),:nitrogen-regulatory protein] [GN:nadE] [CL:spore


outgrowth factor B] [OR:Escherichia coli] [EC:6.3.5.1] [DB:pir2] [MP:34–39


min] >gp:[GI:d1016252:g1742846] [LN:D90817] [AC:D90817:AB001340]


[PN:NH(3)-dependent NAD(+) synthetase (EC 6.3.5.1)] [GN:nadE, efg, ntrL_]


[OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone_lib:Kohara lambda minise] [DB:genpept-bct1] [DE:E. coli genomic DNA,


Kohara clone #326(39.1–39.4 min.).] [NT:ORF_ID:o326#9; similar to [SwissProt


Accession] [LE:7818] [RE:8645] DI:direct] >gp:[GI:d1016258:g1742853]


[LN:D90818] [AC:D90818:AB001340] [PN:NH(3)-dependent NAD(+) synthetase (EC


6.3.5.1)] [GN:nadE, efg, ntrL_] [OR:Escherichia coli] [SR:Escherichia coli


(strain:K12) DNA, clone_lib:Kohara lambda minise] [DB:genpept-bct1]


[DE:E. coli genomic DNA, Kohara clone #327(39.2–39.5 min.).]


[NT:ORF_ID:o326#9; similar to [SwissProt Accession] [LE:2186] [RE:3013]


[DI:direct] >gp:[GI:g1788036] [LN:AE000269] [AC:AE000269:U00096] [PN:NAD


synthetase, prefers NH3 over glutamine] [GN:nadE] [FN:enzyme; Biosynthesis


of cofactors, carriers:] [OR:Escherichia coli] [DB:genpept-bct2]


[EC:6.3.5.1] [DE:Escherichia coli K-12 MG1655 section 159 of 400 of the


complete genome.] [NT:o275; residues 32–274 are 100 pct identical to]


[LE:1232] [RE:2059] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_6147252_c1_473
2517
6289
846
281
150
1.6e−08










Description


sp:[LN:TAGG_BACSU] [AC:P42953] [GN:TAGG] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID TRANSLOCATION PERMEASE PROTEIN TAGG] [SP:P42953] [DB:swissprot]


>pir:[LN:S69202] [AC:S69202:H69720] [PN:teichoic acid permease


tagG:integral membrane protein tagG] [GN:tagG] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g755152] [LN:BSU13832] [AC:U13832] [PN:highly hydrophobic


integral membrane protein] [GN:tagG] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 highly


hydrophobic integral membrane protein(tagG) gene and ATP-binding protein


(tagH) gene, complete cds.] [LE:287] [RE:1114] [DI:direct]


>gp:[GI:e1184477:g2636097] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:permease]


[GN:tagG] [FN:teichoic acid translocation] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [SP:P42953] [LE:77137] [RE:77964] [DI:complement]


>gp:[GI:e1184477:g2636097] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:permease]


[GN:tagG] [FN:teichoic acid translocation] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [SP:P42953] [LE:77137] [RE:77964] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_632661_c2_560
2518
6290
777
258
490
8.8e−47










Description


gp:[GI:g3820538] [LN:AF080002] [AC:AF080002] [PN:cobyric acid synthase CobQ]


[GN:cobQ] [OR:Heliobacillus mobilis] [DB:genpept-bct2] [DE:Heliobacillus


mobilis exopolyphosphatase Ppx (ppx) gene, partial cds; cobyric acid synthase


CobQ (cobQ), UDP-N-acetylmuramyltripeptide synthetase MurC (murC), glutamyl


tRNA reductase HemA (hemA), photosynthesis gene cluster, complete sequence,


stage IIsporulation protein E Sp2E (sp2E), cell cycle protein MesJ


(mesJ), and ATP-dependent zinc metallopeptidase FtsH (ftsH) genes,


complete cds; and nucleoside diphosphate kinase B NdkB (ndkB) gene,


partial cds.] [LE:1238] [RE:1996] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_6682627_c3_604
2519
6291
357
118
123
6.9e−08










Description


gp:[GI:g624123] [LN:PBU42580] [AC:U42580:U17055:U32570] [GN:a58L]


[OR:Paramecium bursaria Chlorella virus 1] [DB:genpept-vrl] [DE:Paramecium


bursaria Chlorella virus 1, complete genome.] [NT:contains Glu-, Gln-rich


regions: QVQVV (11X), KEVWE] [LE:31140] [RE:31628] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_6829687_c2_512
2520
6292
618
205
355
1.8e−32










Description


pir:[LN:S42925] [AC:S42925] [PN:probable transport protein] [CL:ATP-binding


cassette homology] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g459256]


[LN:SASTPSMP] [AC:Z30588] [PN:Potential ABC transporter] [GN:stpC]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus (RN4220) genes for


potential ABC transporter and potential membrane spanning protein.] [LE:199]


[RE:894] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_6931261_c1_409
2521
6293
537
178
128
2.0e−08










Description


gp:[GI:g2689551] [LN:U93688] [AC:U93688] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus toxic shock syndrome toxin-1


(tst), enterotoxin (ent), and integrase (int) genes, complete cds.] [NT:orf4]


[LE:3868] [RE:4395] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_7164087_c2_575
2522
6294
333
110
217
7.5e−18










Description


pir:[LN:A69801] [AC:A69801] [PN:hypothetical protein yfhH] [GN:yfhH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182843:g2633177] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfhH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [LE:123116] [RE:123430] [DI:direct]


>gp:[GI:d1025390:g2804538] [LN:D85082] [AC:D85082] [PN:YfhH] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:16007] [RE:16321]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_7207518_f2_267
2523
6295
375
124
151
7.4e−11










Description


pir:[LN:B27059] [AC:B27059] [PN:hypothetical protein 2] [OR:Glycine max]


[SR:, soybean] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_789010_c3_620
2524
6296
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_799188_f1_118
2525
6297
468
155
252
9.8e−20










Description


gp:[GI:g3929312] [LN:AF100426] [AC:AF100426] [PN:fimbriae-associated protein


Fap1] [GN:fap1] [OR:Streptococcus parasanguinis] [DB:genpept-bct2]


[DE:Streptococcus parasanguis fimbriae-associated protein Fap1 (fap1) gene,


complete cds.] [NT:involved in fimbriae assembly and fimbriae-mediated]


[LE:284] [RE:7996] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_815903_c1_423
2526
6298
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_820325_f2_156
2527
6299
948
315
1131
1.1e−114










Description


sp:[LN:GSAB_BACSU] [AC:P71084] [GN:GSAB] [OR:BACILLUS SUBTILIS] [EC:5.4.3.8]


[DE:(GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE) (GSA-AT)] [SP:P71084]


[DB:swissprot] >gp:[GI:e281581:g1673394] [LN:BSZ82044] [AC:Z82044]


[PN:glutamate-1-semialdehyde aminotransferase] [GN:gsaB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis 25 kb genomic DNA segment (from


sspE to katA).] [SP:P71084] [LE:5984] [RE:7273] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_860677_f1_3
2528
6300
177
58
72
0.017










Description


gp:[GI:g3845668] [LN:AF021254] [AC:AF021254] [PN:unknown] [GN:RTL5]


[OR:avian adenovirus type 8] [DB:genpept-vrl] [DE:Avian adenovirus type 8


strain ATCC A-2A 100 K protein homolog gene, partial cds; RTL10, RTR1, late


33 K protein homolog, pVIII homolog, RTL9, RTR2, fibre homolog, RTL8, RTL7,


RTL6, RTL5, and RTR3 genes, complete cds; and RTL4 gene, partial cds.]


[LE:8905] [RE:9216] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_885756_c3_662
2529
6301
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_979712_c1_430
2530
6302
1422
473
111
0.023










Description


pir:[LN:C71610] [AC:C71610] [PN:probable membrane associated protein


PFB0615c] [GN:PFB0615c] [OR:Plasmodium falciparum] [DB:pir2]


>gp:[GI:g3845231] [LN:AE001406] [AC:AE001406:AE001362] [PN:predicted


membrane associated protein] [GN:PFB0615c] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv2] [DE:Plasmodium


falciparum chromosome 2, section 43 of 73 of the complete sequence.]


[NT:predicted by GlimmerM] [LE:1921:2496:6961] [RE:2310:6749:8358]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_985678_c3_646
2531
6303
975
324
889
4.6e−89










Description


pir:[LN:F69795] [AC:F69795] [PN:conserved hypothetical protein yerQ]


[GN:yerQ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182652:g2632986]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:yerQ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to hypothetical proteins]


[LE:135242] [RE:136153] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000994_9859433_c2_561
2532
6304
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_10580443_c1_140
2533
6305
237
78
246
6.4e−21










Description


sp:[LN:YEED_ECOLI] [AC:P33014] [GN:YEED] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 8.1 KD PROTEIN IN SBCB-HISL INTERGENIC REGION] [SP:P33014]


[DB:swissprot] >pir:[LN:C64966] [AC:C64966] [PN:yeeD protein] [GN:yeeD]


[CL:conserved hypothetical protein HI0721] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:d1016564:g1736686] [LN:D90839] [AC:D90839:AB001340] [GN:yeeD]


[OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone_lib:Kohara lambda minise] [DB:genpept-bct1] [DE:E. coli genomic DNA,


Kohara clone #349(44.6–45.0 min.).] [NT:ORF_ID:o349#3; similar to [SwissProt


Accession] [LE:12878] [RE:13105] [DI:complement] >gp:[GI:d1016569:g1736692]


[LN:D90840] [AC:D90840:AB001340] [GN:yeeD] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #350(44.9–45.2


min.).] [NT:ORF_ID:o349#3; similar to [SwissProt Accession] [LE:1569]


[RE:1796] [DI:complement] >gp:[GI:g405955] [LN:ECOHU43] [AC:U00009]


[PN:yeeD] [OR:Escherichia coli] [SR:Escherichia coli K12 BHB2600]


[DB:genpept-bct1] [DE:sbcB region of E. coli K12 BHB2600.] [NT:similar to ORF


in fliE-amyA intergenic region] [LE:4083] [RE:4310] [DI:complement]


>gp:[GI:g1788322] [LN:AE000292] [AC:AE000292:U00096] [PN:orf, hypothetical


protein] [GN:yeeD] [FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 182 of 400 of the complete genome.]


[NT:f75; 100 pct identical to YEED_ECOLI SW: P33014] [LE:9541] [RE:9768]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_12142768_f1_32
2534
6306
300
99
110
4.2e−06










Description


pir:[LN:D71245] [AC:D71245] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_13907566_c1_148
2535
6307
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_14493812_c1_131
2536
6308
465
154
289
1.8e−25










Description


pir:[LN:C69786] [AC:C69786] [PN:conserved hypothetical protein ydiB]


[GN:ydiB] [CL:hypothetical protein HI0065] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182570:g2632904] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21): from 600701 to 813890.] [NT:similar to


hypothetical proteins] [LE:40670] [RE:41146] [DI:direct]


>gp:[GI:d1020494:g1945107] [LN:D88802] [AC:D88802] [GN:ydiB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168,


isolate:JH642] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


phoB-rrnE-groESL region, complete cds.] [NT:E. coli hypothetical protein;


P31805 (267)] [LE:27672] [RE:28148] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_1461637_f2_60
2537
6309
249
82
123
6.9e−08










Description


sp:[LN:ILVN_BACSU] [AC:P37252] [GN:ILVN] [OR:BACILLUS SUBTILIS]


[EC:4.1.3.18] [DE:(ACETOHYDROXY-ACID SYNTHASE SMALL SUBUNIT) (ALS)]


[SP:P37252] [DB:swissprot] >pir:[LN:E69644] [AC:E69644] [PN:acetolactate


synthase (small subunit) ilvN] [GN:ilvN] [CL:acetolactate synthase small


chain] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143092] [LN:BACILNB]


[AC:L03181] [PN:acetolactate synthase small subunit] [GN:ilvN] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


ilvB, ilvN and ilvC genes, complete ilv-leuoperon.] [LE:2438] [RE:2962]


[DI:direct] >gp:[GI:e1184079:g2635295] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:acetolactate synthase (acetohydroxy-acid] [GN:ilvN]


[FN:valine/isoleucine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.3.18] [DE:Bacillus subtilis complete genome (section 15 of 21): from


2795131 to 3013540.] [SP:P37252] [LE:98696] [RE:99220] [DI:complement]


>gp:[GI:e1165365:g1770067] [LN:BSZ75208] [AC:Z75208] [PN:acetolactate


synthase small subunit] [GN:ilvN] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.3.18] [DE:B. subtilis genomic sequence 89009 bp.] [NT:acetolactate


synthase (acetohydroxy-acid synthase)] [SP:P37252] [LE:70687] [RE:71211]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_14849093_c3_180
2538
6310
294
97
133
6.0e−09










Description


pir:[LN:F71245] [AC:F71245] [PN:hypothetical protein PHS004] [GN:PHS004]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030236:g3256610]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469] [PN:58aa


long hypothetical protein] [GN:PHS004] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [NT:similar to


GENPEPT:Z47547 percent identity:50.000] [LE:195255] [RE:195431] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_14897837_f1_29
2539
6311
1275
424
1161
4.3e−128










Description


sp:[LN:THD1_LACLA] [AC:Q02145] [GN:ILVA] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.2.1.16] [DE:DEAMINASE)]


[SP:Q02145] [DB:swissprot] >pir:[LN:S35141] [AC:S35141] [PN:probable


threonine dehydratase,] [GN:ilvA] [CL:threonine dehydratase]


[OR:Lactococcus lactis subsp. lactis] [EC:4.2.1.16] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_157802_c1_135
2540
6312
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_1702_f2_36
2541
6313
522
173
88
0.0089










Description


pir:[LN:T00168] [AC:T00168] [PN:hypothetical protein 33] [OR:Staphylococcus


aureus phage phi PVL] [DB:pir3] >gp:[GI:d1032869:g3341942] [LN:AB009866]


[AC:AB009866] [OR:bacteriophage phi PVL] [SR:bacteriophage phi PVL


(specific_host:Staphylococcus aureus ATC] [DB:genpept-phg] [DE:Bacteriophage


phi PVL proviral DNA, complete sequence.] [NT:orf 33] [LE:28172] [RE:28582]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_19564128_c2_172
2542
6314
315
104










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_20422318_f3_73
2543
6315
417
138
105
2.2e−05










Description


pir:[LN:D69633] [AC:D69633] [PN:glutamine ABC transporter


(glutamine-binding protein) glnH] [GN:glnH]


[CL:lysine-arginine-ornithine-binding protein] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183973:g2635189] [LN:BSUB0014] [AC:Z99117:AL009126]


[PN:glutamine ABC transporter (glutamine-binding] [GN:glnH] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [LE:202928] [RE:203749] [DI:direct]


>gp:[GI:e1183991:g2635207] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:glutamine


ABC transporter (glutamine-binding] [GN:glnH] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131 to 3013540.] [LE:7248] [RE:8069] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_2114077_c2_166
2544
6316
156
51
115
1.1e−06










Description


pir:[LN:D69786] [AC:D69786] [PN:glycoprotein endopeptidase homolog ydiC]


[GN:ydiC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182571:g2632905]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to glycoprotein endopeptidase]


[LE:41127] [RE:41816] [DI:direct] >gp:[GI:d1020495:g1945108] [LN:D88802]


[AC:D88802] [GN:ydiC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:H.


influenzae hypothetical protein; P43990 (182)] [LE:28129] [RE:28818]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_2125637_f3_111
2545
6317
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_22441907_f2_58
2546
6318
1869
622
1924
9.7e−199










Description


sp:[LN:ILVD_BACSU] [AC:P51785] [GN:ILVD] [OR:BACILLUS SUBTILIS] [EC:4.2.1.9]


[DE:110) (VEG110)] [SP:P51785] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_22766502_f1_18
2547
6319
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_23478463_f3_99
2548
6320
1755
584
1667
1.7e−171










Description


pir:[LN:B69644] [AC:B69644:I39865] [PN:acetolactate synthase, large chain]


[GN:ilvB] [CL:acetolactate synthase large chain:thiamine


pyrophosphate-binding domain homology] [OR:Bacillus subtilis] [EC:4.1.3.18]


[DB:pir2] >gp:[GI:e1184080:g2635296] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:acetolactate synthase (acetohydroxy-acid] [GN:ilvB]


[FN:valine/isoleucine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.3.18] [DE:Bacillus subtilis complete genome (section 15 of 21): from


2795131 to 3013540.] [LE:99217] [RE:100941] [DI:complement]


>gp:[GI:e1165364:g1770066] [LN:BSZ75208] [AC:Z75208] [PN:acetolactate


synthase large subunit] [GN:ilvB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:4.1.3.18] [DE:B. subtilis genomic sequence 89009 bp.] [NT:acetolactate


synthase (acetohydroxy-acid synthase)] [LE:68966] [RE:70690] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_23867325_f2_64
2549
6321
570
189
561
2.6e−54










Description


sp:[LN:LEUD_LACLA] [AC:Q02144] [GN:LEUD] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.2.1.33] [DE:(ISOPROPYLMALATE


ISOMERASE) (ALPHA-IPM ISOMERASE)] [SP:Q02144] [DB:swissprot]


>pir:[LN:E36889] [AC:E36889:S35135] [PN:probable 3-isopropylmalate


dehydratase, chain leuD] [GN:leuD] [CL:3-isopropylmalate dehydratase small


chain] [OR:Lactococcus lactis subsp. lactis] [EC:4.2.1.33] [DB:pir2]


>gp:[GI:g2565154] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:LeuD]


[GN:leuD] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC) , unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:isopropylmalate dehydratase


subunit] [LE:16590] [RE:17165] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_24343813_c1_139
2550
6322
1119
372
1075
9.0e−109










Description


sp:[LN:YEEE_ECOLI] [AC:P33015] [GN:YEEE] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 38.1 KD PROTEIN IN SBCB-HISL INTERGENIC REGION] [SP:P33015]


[DB:swissprot] >pir:[LN:D64966] [AC:D64966] [PN:membrane protein yeeE]


[GN:yeeE] [OR:Escherichia coli] [DB:pir2] >gp:[GI:d1016565:g1736687]


[LN:D90839] [AC:D90839:AB001340] [GN:yeeE] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E. coli genomic DNA, Kohara clone #349(44.6–45.0


min.).] [NT:ORF_ID:o349#4; similar to [SwissProt Accession] [LE:13119]


[RE:14177] [DI:complement] >gp:[GI:d1016570:g1736693] [LN:D90840]


[AC:D90840:AB001340] [GN:yeeE] [OR:Escherichia coli] [SR:Escherichia coli


(strain:K12) DNA, clone_lib:Kohara lambda minise] [DB:genpept-bct1]


[DE:E. coli genomic DNA, Kohara clone #350(44.9–45.2 min.).]


[NT:ORF_ID:o349#4; similar to [SwissProt Accession] [LE:1810] [RE:2868]


[DI:complement] >gp:[GI:g405956] [LN:ECOHU43] [AC:U00009] [PN:yeeE]


[OR:Escherichia coli] [SR:Escherichia coli K12 BHB2600] [DB:genpept-bct1]


[DE:sbcB region of E. coli K12 BHB2600.] [NT:similar to ORF in fliE-amyA


intergenic region] [LE:4324] [RE:5382] [DI:complement] >gp:[GI:g1788323]


[LN:AE000292] [AC:AE000292:U00096] [PN:putative transport system permease


protein] [GN:yeeE] [FN:putative transport; Not classified] [OR:Escherichia


coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 182 of 400


of the complete genome.] [NT:f352; 100 pct identical to YEEE_ECOLI SW:


P33015] [LE:9782] [RE:10840] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_24640625_c2_175
2551
6323
960
319
954
6.0e−96










Description


sp:[LN:SCRR_STAXY] [AC:P74892] [GN:SCRR] [OR:STAPHYLOCOCCUS XYLOSUS]


[DE:SUCROSE OPERON REPRESSOR (SCR OPERON REGULATORY PROTEIN)] [SP:P74892]


[DB:swissprot] >gp:[GI:e264641:g949974] [LN:SXSCRBA] [AC:X67744] [PN:sucrose


repressor] [GN:scrR] [OR:Staphylococcus xylosus] [DB:genpept-bct1]


[DE:S. xylosus scrB and scrR genes.] [SP:P74892] [LE:495] [RE:1457]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_24646962_c1_150
2552
6324
210
69
79
0.0032










Description


gp:[GI:g2564351] [LN:VCU83795] [AC:U83795] [PN:RstR] [GN:rstR] [FN:repressor


of rstA transcription] [OR:Vibrio cholerae] [DB:genpept-bct1] [DE:Vibrio


cholerae RstR (rstR), RstA1 (rstA1), RstB1 (rstB1) and RstC (rstC) genes,


complete cds.] [LE:496] [RE:834] [DI:complement] >gp:[GI:g2564356]


[LN:VCU83796] [AC:U83796] [PN:RstR] [GN:rstR] [FN:repressor of rstA


transcription] [OR:Vibrio cholerae] [DB:genpept-bct1] [DE:Vibrio cholerae


RstR (rstR), RstA2 (rstA2), and RstB2 (rstB2) genes, complete cds.] [LE:496]


[RE:834] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_24814812_f3_90
2553
6325
1950
649
1516
1.7e−155










Description


sp:[LN:YDIF_BACSU] [AC:O05519] [GN:YDIF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDIF] [SP:O05519]


[DB:swissprot] >pir:[LN:G69786] [AC:G69786] [PN:ABC transporter


(ATP-binding protein) homolog ydiF] [GN:ydiF] [CL:ATP-binding cassette


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182574:g2632908]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to ABC transporter (ATP-binding


protein)] [SP:O05519] [LE:43544] [RE:45472] [DI:complement]


>gp:[GI:d1020498:g1945111] [LN:D88802] [AC:D88802] [GN:ydiF] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168,


isolate:JH642] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


phoB-rrnE-groESL region, complete cds.] [NT:H. influenzae hypothetical ABC


transporter; P44808] [LE:30546] [RE:32474] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_24823588_f2_63
2554
6326
1386
461
1633
6.7e−168










Description


sp:[LN:LEU2_LACLA] [AC:Q02142] [GN:LEUC] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.2.1.33] [DE:(ISOPROPYLMALATE


ISOMERASE) (ALPHA-IPM ISOMERASE) (IPMI)] [SP:Q02142] [DB:swissprot]


>pir:[LN:S35134] [AC:S35134] [PN:probable 3-isopropylmalate dehydratase,


chain leuC] [GN:leuC] [OR:Lactococcus lactis subsp. lactis] [SR:strain


NCDO2118, , strain NCDO2118] [SR:strain NCDO2118,] [EC:4.2.1.33] [DB:pir2]


>gp:[GI:g2565153] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:LeuC]


[GN:leuC] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:isopropylmalate dehydratase


subunit] [LE:15188] [RE:16570] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_25900300_c3_212
2555
6327
330
110
297
2.5e−26










Description


gp:[GI:g2689561] [LN:U93688] [AC:U93688] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus toxic shock syndrome toxin-1


(tst), enterotoxin (ent), and integrase (int) genes, complete cds.]


[NT:orf14] [LE:10769] [RE:11029] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_26615912_c3_206
2556
6328
1479
492
1943
9.5e−201










Description


sp:[LN:SCRB_STAXY] [AC:Q05936] [GN:SCRB] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:3.2.1.26] [DE:SUCROSE-6-PHOSPHATE HYDROLASE, (SUCRASE) (INVERTASE)]


[SP:Q05936] [DB:swissprot] >pir:[LN:A47059] [AC:A47059] [PN:sucrase ScrB]


[OR:Staphylococcus xylosus] [DB:pir2] >gp:[GI:e264653:g288269] [LN:SXSCRBA]


[AC:X67744] [PN:beta-fructofuranosidase] [GN:scrB] [OR:Staphylococcus


xylosus] [DB:genpept-bct1] [EC:3.2.1.26] [DE:S. xylosus scrB and scrR genes.]


[SP:Q05936] [LE:1541] [RE:3025] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_2866090_f2_35
2557
6329
1254
417
1250
2.6e−127










Description


gp:[GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst), enterotoxin (ent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_29307312_c3_181
2558
6330
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_31436_f1_15
2559
6331
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_31680342_f3_74
2560
6332
546
181
176
4.6e−12










Description


gp:[GI:g1633572] [LN:KSU52064] [AC:U52064] [OR:Kaposi's sarcoma-associated


herpesvirus] [SR:Kaposi's sarcoma-associated herpesvirus - Human herpesvirus


8] [DB:genpept-vrl] [DE:Kaposi's sarcoma-associated herpes-like virus ORF73


homolog gene, complete cds.] [NT:Herpesvirus saimiri ORF73 homolog] [LE:1]


[RE:3489] [DI:direct] >gp:[GI:g1718329] [LN:KSU75698] [AC:U75698]


[OR:Kaposi's sarcoma-associated herpesvirus] [SR:Kaposi's sarcoma-associated


herpesvirus - Human herpesvirus 8] [DB:genpept-vrl] [DE:Kaposi's


sarcoma-associated herpesvirus long unique region, 80 putative ORF's and


kaposin gene, complete cds.] [NT:ORF 73; extensive acidic domains, potential


leucine] [LE:123809] [RE:127297] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_33203138_c1_133
2561
6333
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_3361326_c2_151
2562
6334
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_34257878_f2_62
2563
6335
1065
354
894
1.4e−89










Description


sp:[LN:LEU3_LACLA] [AC:Q02143] [GN:LEUB] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:1.1.1.85] [DE:(IMDH) (3-IPM-DH)]


[SP:Q02143] [DB:swissprot] >pir:[LN:S35133] [AC:S35133:C36889]


[PN:3-isopropylmalate dehydrogenase,] [GN:leuB] [CL:3-isopropylmalate


dehydrogenase] [OR:Lactococcus lactis subsp. lactis] [SR:strain NCDO2118, ,


strain NCDO2118] [SR:strain NCDO2118,] [EC:1.1.1.85] [DB:pir2]


>gp:[GI:g2565152] [LN:LLU92974] [AC:U92974:M90760:M90761] [PN:LeuB]


[GN:leuB] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus lactis


unknown gene, partial cds, and HisC (hisC), unknown, HisG (hisG), unknown,


HisB (hisB), unknown, HisH (hish), HisA (hisA), HisF (hisF), HisIE (hisIE),


unknown, unknown, LeuA (leuA), LeuB (leuB), LeuC (leuC), LeuD (leuD),


unknown, IlvD (ilvD), IlvB (ilvB), IlvN, IlvC (ilvC), IlvA (ilvA), AldB


(aldB) and aldR (aldR) genes, complete cds.] [NT:isopropylmalate


dehydrogenase] [LE:13788] [RE:14825] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_34412750_c3_207
2564
6336
966
321
1031
4.2e−104










Description


pir:[LN:S20799] [AC:S58482:S20799] [PN:hypothetical protein 7]


[CL:ribokinase] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46512]


[LN:SAAGRAB] [AC:X52543:M32737] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus agrA, agrB and hld genes.] [NT:orf 7] [LE:4896] [RE:5855]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_35598750_f3_72
2565
6337
849
282
112
3.9e−06










Description


gp:[GI:g2897106] [LN:AF020798] [AC:AF020798] [PN:repressor]


[OR:Streptococcus thermophilus bacteriophage TP-J34] [DB:genpept-phg]


[DE:Streptococcus thermophilus bacteriophage lysogeny module,


integrase homolog (int), putative host cell surface-exposed


lipoprotein, putative metallo-proteinase, repressor, Cro-like


regulatory protein, and P1-antirepressor homolog genes, complete cds.]


[NT:CI-like regulatory protein; orf121] [LE:4825] [RE:5190] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_36132937_f2_53
2566
6338
1641
546
273
9.6e−20










Description


sp:[LN:HEXA_STRPN] [AC:P10564] [GN:HEXA] [OR:STREPTOCOCCUS PNEUMONIAE]


[DE:DNA MISMATCH REPAIR PROTEIN HEXA] [SP:P10564] [DB:swissprot]


>pir:[LN:C28667] [AC:C28667] [PN:DNA mismatch repair protein hexA] [GN:hexA]


[CL:DNA mismatch repair protein mutS] [OR:Streptococcus pneumoniae]


[DB:pir2] >gp:[GI:g153655] [LN:STRHEXA] [AC:M18729] [PN:mismatch repair


protein] [GN:hexA] [OR:Streptococcus pneumoniae] [SR:Streptococcus


pneumoniae (strain 175) (clone: pLS141.) DNA] [DB:genpept-bct1]


[DE:S. pneumoniae mismatch repair protein (hexA) gene, complete cds.]


[LE:971] [RE:3505] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_36206502_c3_197
2567
6339
483
160
340
7.0e−31










Description


pir:[LN:E69786] [AC:E69786] [PN:ribosomal-protein-alanine N-acetyltransfer


homolog ydiD] [GN:ydiD] [CL:Escherichia coli peptide N-acetyltransferase


rimI] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182572:g2632906]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to ribosomal-protein-alanine]


[LE:41826] [RE:42281] [DI:direct] >gp:[GI:d1020496:g1945109] [LN:D88802]


[AC:D88802] [GN:ydiD] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:H.


influenzae, ribosomal protein alanine] [LE:28828] [RE:29283] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_409556_f1_33
2568
6340
135
44
112
2.5e−06










Description


pir:[LN:D71245] [AC:D71245] [PN:hypothetical protein PH0221] [GN:PH0221]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030234:g3256608]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:235aa long hypothetical protein] [GN:PH0221] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:194212]


[RE:194919] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_4707506_c2_174
2569
6341
1314
437
1156
2.4e−117










Description


sp:[LN:NRGA_BACSU] [AC:Q07429] [GN:NRGA] [OR:BACILLUS SUBTILIS] [DE:PROBABLE


AMMONIUM TRANSPORTER (MEMBRANE PROTEIN NRGA)] [SP:Q07429] [DB:swissprot]


>pir:[LN:A36865] [AC:A36865:D69667] [PN:ammonium transporter nrgA] [GN:nrgA]


[CL:ammonium transporter nrgA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g143264] [LN:BACNRGABO] [AC:L03216] [PN:membrane-associated protein]


[GN:nrgA] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain 168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis operon membrane-associated protein


(nrgA), and PII-like protein (nrgB) genes, complete cds.] [NT:putative]


[LE:126] [RE:1340] [DI:direct] >gp:[GI:e1184557:g2636176] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ammonium transporter] [GN:nrgA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21): from 3597091 to 3809700.] [SP:Q07429] [LE:158754] [RE:159968]


[DI:direct] >gp:[GI:e283112:g1684645] [LN:BSZ82987] [AC:Z82987] [PN:unknown]


[GN:nrgA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


ywo[A,B,C,D,E,F,G,H], nrg[A,B], spoIIID and mb1 genes.] [SP:Q07429]


[LE:1335] [RE:2549] [DI:complement] >gp:[GI:e1184557:g2636176] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ammonium transporter] [GN:nrgA] [OR:Bacillus


subtilis] [DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of


21): from 3597091 to 3809700.] [SP:Q07429] [LE:158754] [RE:159968]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_4958387_c1_132
2570
6342
537
178
305
3.6e−27










Description


pir:[LN:D69786] [AC:D69786] [PN:glycoprotein endopeptidase homolog ydiC]


[GN:ydiC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182571:g2632905]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to glycoprotein endopeptidase]


[LE:41127] [RE:41816] [DI:direct] >gp:[GI:d1020495:g1945108] [LN:D88802]


[AC:D88802] [GN:ydiC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:H.


influenzae hypothetical protein; P43990 (182)] [LE:28129] [RE:28818]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_5359438_c2_167
2571
6343
1107
368
1096
5.4e−111










Description


sp:[LN:YDIE_BACSU] [AC:005518] [GN:YDIE] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 36.8 KD PROTEIN IN PHOB-GROES INTERGENIC REGION]


[SP:O05518] [DB:swissprot] >pir:[LN:F69786] [AC:F69786] [PN:glycoprotein


endopeptidase homolog ydiE] [GN:ydiE] [CL:O-sialoglycoprotein


endopeptidase] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182573:g2632907]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:ydiE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to 813890.] [NT:similar to glycoprotein endopeptidase]


[SP:O05518] [LE:42274] [RE:43314] [DI:direct] >gp:[GI:d1020497:g1945110]


[LN:D88802] [AC:D88802] [GN:ydiE] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168, isolate:JH642] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds.] [NT:P.


haemolytica o-sialoglycoprotein endopeptidase;] [LE:29276] [RE:30316]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_5909428_c3_203
2572
6344
750
249
582
1.6e−56










Description


gp:[GI:d1039124:g4514349] [LN:AB013375] [AC:AB013375] [PN:YdiH] [GN:ydiH]


[OR:Bacillus halodurans] [SR:Bacillus halodurans (strain:C-125) DNA]


[DB:genpept-bct1] [DE:Bacillus halodurans C-125 ydiH, ydiI, ydij, yhcA and


yxaA genes, complete and partial cds.] [LE:235] [RE:870] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_6836010_c2_153
2573
6345
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_860790_f3_101
2574
6346
1593
530
1391
3.0e−142










Description


sp:[LN:LEU1_LACLA] [AC:Q02141] [GN:LEUA] [OR:LACTOCOCCUS LACTIS]


[SR:,SUBSPLACTIS:STREPTOCOCCUS LACTIS] [EC:4.1.3.12] [DE:SYNTHASE)


(ALPHA-IPM SYNTHETASE)] [SP:Q02141] [DB:swissprot] >pir:[LN:S35132]


[AC:S35132:B36889] [PN:2-isopropylmalate synthase,:alpha-isopropylmalate


synthase] [GN:leuA] [CL:2-isopropylmalate synthase leuA] [OR:Lactococcus


lactis subsp. lactis] [EC:4.1.3.12] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_9843800_f1_8
2575
6347
192
63
47
0.020










Description


gp:[GI:e236301:g1263146] [LN:MTMCECYTB] [AC:Z70776] [PN:cytochrome b]


[OR:Mitochondrion Mugil cephalus] [SR:Mugil cephalus] [DB:genpept-vrt]


[DE:M. cephalus mitochondrial cytochrome b gene.] [LE:<1] [RE:>292]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000995_995451_f2_61
2576
6348
1020
339
1139
1.5e−115










Description


sp:[LN:ILVC_BACSU] [AC:P37253] [GN:ILVC] [OR:BACILLUS SUBTILIS]


[EC:1.1.1.86] [DE:ISOMEROREDUCTASE) (ALPHA-KETO-BETA-HYDROXYLACIL


REDUCTOISOMERASE)] [SP:P37253] [DB:swissprot] >pir:[LN:C69644] [AC:C69644]


[PN:ketol-acid reductoisomerase ilvC] [GN:ilvC] [CL:Methanococcus


ketol-acid reductoisomerase: ketol-acid reductoisomerase homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143093] [LN:BACILNB] [AC:L03181]


[PN:ketol-acid reductoisomerase] [GN:ilvC] [OR:Bacillus subtilis]


[SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis ilvB,


ilvN and ilvC genes, complete ilv-leuoperon.] [LE:2979] [RE:4007]


[DI:direct] >gp:[GI:e1184078:g2635294] [LN:BSUB0015] [AC:Z99118:AL009126]


[PN:ketol-acid reductoisomerase (acetohydroxy-acid] [GN:ilvC]


[FN:valine/isoleucine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.1.1.86] [DE:Bacillus subtilis complete genome (section 15 of 21): from


2795131 to 3013540.] [SP:P37253] [LE:97651] [RE:98679] [DI:complement]


>gp:[GI:e1165366:g1770068] [LN:BSZ75208] [AC:Z75208] [PN:ketol-acid


reductoisomerase] [GN:ilvC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.1.1.86] [DE:B. subtilis genomic sequence 89009 bp.] [NT:ketol-acid


reductoisomerase (acetohydroxy-acid] [SP:P37253] [LE:71228] [RE:72256]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_10719452_c3_376
2577
6349
684
227
371
3.6e−34










Description


sp:[LN:HLY3_BACSU] [AC:P54175] [GN:YPLQ] [OR:BACILLUS SUBTILIS]


[DE:HEMOLYSIN III HOMOLOG] [SP:P54175] [DB:swissprot] >pir:[LN:D69938]


[AC:D69938] [PN:hemolysin III homolog homolog yplQ] [GN:yplQ]


[CL:hemolysin III yplQ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256643]


[LN:BACYACA] [AC:L77246] [GN:yplQ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis (YAC10-9 clone) DNA region between the serA and kdg


loci.] [NT:20.2% identity with NADH dehydrogenase of the] [LE:25508]


[RE:26149] [DI:complement] >gp:[GI:e1183626:g2634599] [LN:BSUB0012]


[AC:Z99115:AL009126] [GN:yplQ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 12 of 21):


from 2195541 to 2409220.] [NT:similar to hemolysin III homolog] [SP:P54175]


[LE:99003] [RE:99644] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_10734567_f3_197
2578
6350
249
82










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_10752342_c2_327
2579
6351
981
326
773
9.1e−77










Description


pir:[LN:D69812] [AC:D69812] [PN:ferrichrome ABC transporter (permease)


homolog yfmE] [GN:yfmE] [CL:vitamin B12 transport protein btuC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182740:g2633074] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfmE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ferrichrome ABC transporter


(permease)] [LE:20404] [RE:21405] [DI:complement] >gp:[GI:d1023182:g2443248]


[LN:D86417] [AC:D86417] [PN:YfmE] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb


genomic DNA, 70–73 degree region, complete cds.] [LE:27116] [RE:28117]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_10759818_c1_271
2580
6352
1008
335
669
9.5e−66










Description


pir:[LN:B69812] [AC:B69812] [PN:ferrichrome ABC transporter (binding prote)


homolog yfmC] [GN:yfmC] [CL:iron(III) dicitrate transport protein]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182742:g2633076] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfmC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ferrichrome ABC transporter (binding]


[LE:22475] [RE:23422] [DI:complement] >gp:[GI:d1023180:g2443246] [LN:D86417]


[AC:D86417] [PN:YfmC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb genomic


DNA, 70–73 degree region, complete cds.] [LE:25099] [RE:26046] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_11913877_f1_49
2581
6353
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_11961568_c2_311
2582
6354
945
314
1007
1.5e−101










Description


sp:[LN:LACC_STAAU] [AC:P11099] [GN:LACC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.1.144] [DE:TAGATOSE-6-PHOSPHATE KINASE, (PHOSPHOTAGATOKINASE)]


[SP:P11099] [DB:swissprot] >pir:[LN:S04358] [AC:S04358] [PN:lacC protein]


[GN:lacC] [CL:6-phosphofructokinase 2] [OR:Staphylococcus aureus] [DB:pir2]


>gp:[GI:g46605] [LN:SALACCD] [AC:X14827] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus lacC and lacD genes.] [NT:lacC


polypeptide (AA 1–310)] [SP:P11099] [LE:55] [RE:987] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_12578885_f2_109
2583
6355
366
121










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_12603166_f2_89
2584
6356
303
100
110
1.6e−06










Description


pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_1287875_f3_173
2585
6357
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_13680468_c2_336
2586
6358
1080
359
1133
6.4e−115










Description


sp:[LN:YBAL_BACSU] [AC:P50863] [GN:YBAL:REC233] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 38.6 KD PROTEIN IN CWLD-GERD INTERGENIC REGION] [SP:P50863]


[DB:swissprot] >pir:[LN:A69743] [AC:A69743] [PN:ATP-binding Mrp-like


protein homolog ybaL] [GN:ybaL] [CL:conserved probable membrane protein


YIL003w] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e95614:g1177249]


[LN:BSCWLD] [AC:X74737] [GN:rec233] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis cwlD, rec223 and gerD genes.] [SP:P50863] [LE:1376] [RE:2434]


[DI:direct] >gp:[GI:e1182087:g2632421] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:ybaL] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [NT:alternate


gene name: ybxI; similar to ATP-binding] [LE:157420] [RE:158478] [DI:direct]


>gp:[GI:d1011652:g1644213] [LN:D64126] [AC:D64126] [PN:unknown] [GN:orf14]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genes for ribosomal proteins L13 and


S9, putative cell wall hydrolase CwlD, gerD protein, 16S ribosomal RNA and


23S ribosomal RNA.] [LE:6981] [RE:8039] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_13871068_c1_247
2587
6359
666
221
893
1.7e−89










Description


gp:[GI:d1039013:g4512410] [LN:AB017508] [AC:AB017508] [GN:rpsC] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, complete cds.]


[NT:rpsC homologue (identity of 87% to B. subtilis)] [LE:16781] [RE:17440]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_13886593_c2_318
2588
6360
252
83
96
5.0e−05










Description


gp:[GI:g727435] [LN:LLU23376] [AC:U23376] [OR:Lactococcus lactis]


[DB:genpept-bct1] [DE:Lactococcus lactis N5-(1-carboxyethyl)-L-ornithine


synthase (ceo)gene, complete cds.] [NT:putative 6-kDa protein] [LE:165]


[RE:353] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_1408450_f2_158
2589
6361
564
187
104
9.8e−06










Description


pir:[LN:E71186] [AC:E71186] [PN:hypothetical protein PH1769] [GN:PH1769]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031827:g3258201]


[LN:AP000007]


[AC:AP000007:AB009464:AB009465:AB009521:AB009522:AB009523:AB009524]


[PN:100aa long hypothetical protein] [GN:PH1769] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1485001–1738505 nt. position(7/7).] [LE:59186]


[RE:59488] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_1410277_f1_4
2590
6362
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_14277217_c2_297
2591
6363
516
171
626
3.4e−61










Description


sp:[LN:RS5_BACSU] [AC:P21467] [GN:RPSE:SPCA] [OR:BACILLUS SUBTILIS] [DE:30S


RIBOSOMAL PROTEIN S5 (BS5)] [SP:P21467] [DB:swissprot] >pir:[LN:R3BS5S]


[AC:D69699:S12680:S11355] [PN:ribosomal protein S5] [GN:rpsE]


[CL:Escherichia coli ribosomal protein S5] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:g1044981] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein S5]


[GN:rpsE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:3585] [RE:4085] [DI:direct] >gp:[GI:e1182066:g2632400]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:ribosomal protein S5] [GN:rpsE]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [SP:P21467] [LE:143359]


[RE:143859] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_14312750_c3_354
2592
6364
492
163
665
2.5e−65










Description


sp:[LN:RL13_STACA] [AC:Q00990] [GN:RPLM] [OR:STAPHYLOCOCCUS CARNOSUS]


[DE:50S RIBOSOMAL PROTEIN L13] [SP:Q00990] [DB:swissprot] >pir:[LN:S23063]


[AC:S23063] [PN:ribosomal protein L13] [GN:rplM] [CL:Escherichia coli


ribosomal protein L13] [OR:Staphylococcus carnosus] [DB:pir2]


>gp:[GI:g46912] [LN:SCRPLM] [AC:X63912:S79454] [PN:ribosomal protein L13]


[GN:rplM] [OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:S. carnosus rplM


gene for ribosomal protein L13.] [SP:Q00990] [LE:309] [RE:746] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_14346067_c2_316
2593
6365
1023
340
561
2.6e−54










Description


gp:[GI:g4321580] [LN:AF050114] [AC:AF050114] [PN:alginate lyase]


[OR:Pseudomonas sp. W7] [DB:genpept-bct2] [DE:Pseudomonas sp. W7 alginate


lyase gene, complete cds.] [LE:1] [RE:1038] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_14531558_f1_53
2594
6366
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_14900826_c3_386
2595
6367
351
116
188
8.9e−15










Description


gp:[GI:g208931] [LN:SYNORFLAC] [AC:M15619] [OR:synthetic construct]


[SR:E. coli (strain SE5000) synthetic DNA, clone pKB1] [DB:genpept-syn]


[DE:Synthetic E. coli ORF16/lacZ fusion protein, partial cds.] [NT:ORF16-lacZ


fusion protein] [LE:29] [RE:>232] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_157750_c3_379
2596
6368
195
64










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_15879002_f2_96
2597
6369
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_16829627_c2_300
2598
6370
372
123
484
3.8e−46










Description


gp:[GI:g1044989] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein S13]


[GN:rpsM] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:8197] [RE:8562] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_16835333_c2_288
2599
6371
840
279
1198
8.3e−122










Description


gp:[GI:g1165306] [LN:BSU43929] [AC:U43929] [PN:L2] [GN:rplB] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis ribosomal protein gene


cluster, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV and rpsC genes, complete


cds, and rplP gene, partial cds.] [NT:ribosomal protein] [LE:2266] [RE:3099]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_197127_f2_121
2600
6372
1965
654
285
9.0e−22










Description


sp:[LN:Y4XN_RHISN] [AC:P55706] [GN:Y4XN] [OR:RHIZOBIUM SP] [SR:NGR234,]


[DE:HYPOTHETICAL 71.0 KD PROTEIN Y4XN] [SP:P55706] [DB:swissprot]


>gp:[GI:g2182722] [LN:AE000106] [AC:AE000106:U00090] [PN:Y4xN] [GN:y4xN]


[OR:Rhizobium sp. NGR234] [DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid


pNGR234a, section 43 of 46 of the complete plasmid sequence.]


[NT:hypothetical 71 kd protein; similar to Escherichia] [LE:6573] [RE:8459]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_19730052_c1_278
2601
6373
1479
492
990
9.2e−100










Description


pir:[LN:F69763] [AC:F69763] [PN:multidrug resistance protein homolog ycnB]


[GN:ycnB] [CL:lincomycin-resistance protein lmrB] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182351:g2632685] [LN:BSUB0003] [AC:Z99106:AL009126]


[GN:ycnB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 3 of 21): from 402751 to 611850.]


[NT:similar to multidrug resistance protein] [LE:32866] [RE:34284]


[DI:complement] >gp:[GI:d1009651:g1805454] [LN:D50453] [AC:D50453]


[PN:homologue of multidrug resistance protein B,] [GN:ycnB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing the amyE-srfA


region, complete cds.] [LE:115269] [RE:116687] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_19822151_c2_302
2602
6374
372
123
433
9.7e−41










Description


pir:[LN:F32307] [AC:F32307:C69696] [PN:ribosomal protein L17:ribosomal


protein BL15 (rplQ)] [GN:rplQ] [CL:Escherichia coli ribosomal protein L17]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142464] [LN:BACALPHA] [AC:M26414]


[PN:ribosomal protein L17] [GN:rplQ] [OR:Bacillus subtilis] [SR:Bacillus


subtilis DNA] [DB:genpept-bct1] [DE:B. subtilis initiation factor 1,


ribosomal proteins B, S13, S11, L17 and RNA polymerase alpha core protein


genes, complete cds.] [LE:2603] [RE:2965] [DI:direct] >gp:[GI:g1044992]


[LN:BACRPLP] [AC:L47971] [PN:ribosomal protein L17] [GN:rplQ] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis ribosomal protein


(rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane protein (secY)


gene, adenylatekinase (adk) gene, methionine aminopeptidase (map)


gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA) gene.]


[LE:10177] [RE:10539] [DI:direct] >gp:[GI:e1182077:g2632411] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:ribosomal protein L17 (BL15)] [GN:rplQ]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [SP:P20277] [LE:149951]


[RE:150313] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_20363762_c3_375
2603
6375
1215
404
587
4.7e−57










Description


gp:[GI:g5052662] [LN:AF145686] [AC:AF145686] [PN:BcDNA.LD24639]


[GN:BcDNA.LD24639] [OR:Drosophila melanogaster] [SR:fruit fly]


[DB:genpept-inv2] [DE:Drosophila melanogaster clone LD24639 BcDNA.LD24639


(BcDNA.LD24639)mRNA, complete cds.] [LE:199] [RE:1761] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_2125637_f3_165
2604
6376
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_21516287_f1_6
2605
6377
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_21751063_c1_245
2606
6378
579
192
621
1.2e−60










Description


sp:[LN:RL3_BACST] [AC:P28600] [GN:RPLC] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L3] [SP:P28600] [DB:swissprot] >pir:[LN:S24363]


[AC:S24363:S36085] [PN:ribosomal protein L3] [GN:rpl3] [CL:Escherichia


coli ribosomal protein L3] [OR:Bacillus stearothermophilus] [DB:pir2]


>gp:[GI:g40102] [LN:BSRPLCLD] [AC:X67014:S42397] [PN:ribosomal protein L3]


[GN:rp1C] [OR:Bacillus stearothermophilus] [DB:genpept-bct1]


[DE:B. stearothermophilus genes rplC and rplD for ribosomal proteins L3 and


L4, respectively.] [SP:P28600] [LE:52] [RE:693] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_21915941_c1_250
2607
6379
372
123
571
2.3e−55










Description


sp:[LN:RL14_BACSU] [AC:P12875] [GN:RPLN] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L14] [SP:P12875] [DB:swissprot] >pir:[LN:R5BS4B]


[AC:S05992:H69695] [PN:ribosomal protein L14] [GN:rplN] [CL:Escherichia


coli ribosomal protein L14] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:g1044974] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein L14]


[GN:rplN] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:675] [RE:1043] [DI:direct] >gp:[GI:g40150] [LN:BSSPC] [AC:X15664]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis S10/spc operon rpmC,


rpsQ, rplN, rplX, rplE, rpsN genes.] [NT:L14 protein (AA 1–122)] [SP:P12875]


[LE:840] [RE:1208] [DI:direct] >gp:[GI:e1182059:g2632393] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:ribosomal protein L14] [GN:rplN] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [SP:P12875] [LE:140449] [RE:140817] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_22002318_c3_342
2608
6380
330
109
390
3.5e−36










Description


sp:[LN:RL24_BACST] [AC:P04455] [GN:RPLX] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L24] [SP:P04455] [DB:swissprot] >pir:[LN:R5BS24]


[AC:A02819] [PN:ribosomal protein L24] [CL:Escherichia coli ribosomal


protein L24] [OR:Bacillus stearothermophilus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_22455303_f3_190
2609
6381
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_22688428_c3_383
2610
6382
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_22900877_c1_252
2611
6383
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23460931_f2_100
2612
6384
429
142










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23572128_c3_346
2613
6385
183
60
282
9.7e−25










Description


sp:[LN:RL30_STAAU] [AC:006444] [GN:RPMD] [OR:STAPHYLOCOCCUS AUREUS] [DE:50S


RIBOSOMAL PROTEIN L30] [SP:O06444] [DB:swissprot] >gp:[GI:g2078380]


[LN:SAU96620] [AC:U96620] [PN:ribosomal protein L30] [GN:L30]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus NCTC


8325 ribosomal protein L30 (L30),ribosomal protein L15 (L15) and SecY (secY)


genes, complete cds.] [LE:65] [RE:244] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23572180_c3_349
2614
6386
222
73
326
2.1e−29










Description


pir:[LN:F69644] [AC:F69644] [PN:translation initiation factor IF-1]


[GN:infA] [CL:translation initiation factor IF-1] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g142459] [LN:BACALPHA] [AC:M26414] [PN:initiation factor


1] [GN:infA] [OR:Bacillus subtilis] [SR:Bacillus subtilis DNA]


[DB:genpept-bct1] [DE:B. subtilis initiation factor 1, ribosomal proteins B,


S13, S11, L17 and RNA polymerase alpha core protein genes, complete cds.]


[LE:235] [RE:453] [DI:direct] >gp:[GI:g1044987] [LN:BACRPLP] [AC:L47971]


[PN:initiation factor IF-1] [GN:infA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ribosomal protein (rplPNXEFROQ,


rpmCDJ, rpsQNHEMK) genes, integral membrane protein (secY) gene,


adenylatekinase (adk) gene, methionine aminopeptidase (map) gene, initiation


factor 1 (infA) gene, RNA polymerase alpha (rpoA) gene.] [LE:7809] [RE:8027]


[DI:direct] >gp:[GI:e1182072:g2632406] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:initiation factor IF-I] [GN:infA] [FN:protein synthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [SP:P20458] [LE:147583] [RE:147801] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23573587_c2_294
2615
6387
201
66
287
2.9e−25










Description


gp:[GI:d1039020:g4512417] [LN:AB017508] [AC:AB017508] [GN:rpsN] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, complete cds.]


[NT:rpsN homologue (identity of 92% to B. subtilis)] [LE:19712] [RE:19897]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23603450_c2_317
2616
6388
585
194
85
0.0017










Description


pir:[LN:S77761] [AC:S77761] [PN:probable phosphotransferase system enzyme


II,:protein MC456:protein-Npi-phosphohistidine--sugar phosphotransferase]


[OR:Mycoplasma capricolum] [EC:2.7.1.69] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23632750_c3_365
2617
6389
525
174
726
8.7e−72










Description


pir:[LN:JC2527] [AC:JC2527:PC2381] [PN:alkaline shock protein] [GN:asp23]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g894289] [LN:S76213]


[AC:S76213] [PN:alkaline shock protein 23] [GN:asp23] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus 912] [DB:genpept-bct1] [DE:asp23 = alkaline


shock protein 23 {methicillin resistant} [Staphylococcus aureus, 912,


Genomic, 1360 nt].] [NT:Method: conceptual translation with partial peptide]


[LE:343] [RE:852] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23634813_c3_355
2618
6390
771
256
970
1.2e−97










Description


sp:[LN:LACR_STAAU] [AC:P16644] [GN:LACR] [OR:STAPHYLOCOCCUS AUREUS]


[DE:LACTOSE PHOSPHOTRANSFERASE SYSTEM REPRESSOR] [SP:P16644] [DB:swissprot]


>pir:[LN:A44506] [AC:A44506] [PN:lactose operon repressor lacR]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g153035] [LN:STALACR]


[AC:M32103] [PN:lacR repressor] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain 8325-4) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus lac repressor (lacR) gene, complete cds and lacA


repressor (lacA), partial cds.] [LE:1058] [RE:1813] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23642761_f1_22
2619
6391
228
75
80
0.0064










Description


gp:[GI:d1000903:g220579] [LN:MUSPRIMP] [AC:D00570:J00614] [OR:Mus musculus]


[SR:Mus musculus male cDNA to mRNA] [DB:genpept-rod] [DE:Mus musculus mRNA


for ORFs (putative primordial protein), complete cds.] [NT:open reading frame


(196 AA)] [LE:584] [RE:1174] [DI:direct] >gp:[GI:d1000903:g220579]


[LN:MUSPRIMP] [AC:D00570:J00614] [OR:Mus musculus] [SR:Mus musculus male


cDNA to mRNA] [DB:genpept] [DE:Mus musculus mRNA for ORFs (putative


primordial protein), complete cds.] [NT:open reading frame (196 AA)] [LE:584]


[RE:1174] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23683375_c3_356
2620
6392
507
168
583
1.2e−56










Description


sp:[LN:LACA_STRMU] [AC:P26423] [GN:LACA] [OR:STREPTOCOCCUS MUTANS]


[EC:5.3.1.26] [DE:GALACTOSE-6-PHOSPHATE ISOMERASE LACA SUBUNIT,] [SP:P26423]


[DB:swissprot] >pir:[LN:C43258] [AC:C43258:S27701] [PN:galactoside


O-acetyltransferase,] [GN:lacA] [OR:Streptococcus mutans] [EC:2.3.1.18]


[DB:pir2] >gp:[GI:g153673] [LN:STRLACOP] [AC:M80797] [PN:galactosidase


acetyltransferase] [GN:lacA] [OR:Streptococcus mutans] [SR:Streptococcus


mutans (strain PS14) DNA] [DB:genpept-bct1] [EC:2.3.1.18] [DE:Streptococcus


mutans lac operon.] [LE:1534] [RE:1962] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_2379658_f2_82
2621
6393
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23882135_c2_303
2622
6394
873
290
665
2.5e−65










Description


sp:[LN:YBXA_BACSU] [AC:P40735] [GN:YBXA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBXA] [SP:P40735]


[DB:swissprot] >pir:[LN:E69751] [AC:E69751:G32307] [PN:ABC transporter


(ATP-binding protein) homolog ybxA] [GN:ybxA] [CL:ATP-binding cassette


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182078:g2632412]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:ybxA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [NT:alternate gene name: ybaD; similar to ABC]


[SP:P40735] [LE:150441] [RE:151286] [DI:direct] >gp:[GI:d1011641:g1644202]


[LN:D64126] [AC:D64126] [PN:unknown] [GN:orf4] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genes for ribosomal proteins L13 and S9, putative cell wall


hydrolase CwlD, gerD protein, 16S ribosomal RNA and 23S ribosomal RNA.]


[LE:1] [RE:846] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_23944052_f1_36
2623
6395
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24223787_c1_258
2624
6396
156
51
221
2.8e−18










Description


sp:[LN:RPOA_BACSU] [AC:P20429] [GN:RPOA] [OR:BACILLUS SUBTILIS] [EC:2.7.7.6]


[DE:ALPHA CHAIN) (RNA POLYMERASE ALPHA SUBUNIT)] [SP:P20429] [DB:swissprot]


>pir:[LN:E32307] [AC:E32307:C24972:E69698] [PN:DNA-directed RNA polymerase,


alpha chain rpoA:transcriptase alpha chain] [GN:rpoA] [CL:DNA-directed RNA


polymerase alpha chain] [OR:Bacillus subtilis] [EC:2.7.7.6] [DB:pir2]


>gp:[GI:g142463] [LN:BACALPHA] [AC:M26414] [PN:RNA polymerase


alpha-core-subunit] [GN:rpoA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


DNA] [DB:genpept-bct1] [DE:B. subtilis initiation factor 1, ribosomal


proteins B, S13, S11, L17 and RNA polymerase alpha core protein genes,


complete cds.] [LE:1581] [RE:2525] [DI:direct] >gp:[GI:g1044991]


[LN:BACRPLP] [AC:L47971] [PN:RNA polymerase alpha-core-subunit] [GN:rpoA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis ribosomal


protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane protein


(secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase (map)


gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA) gene.]


[LE:9155] [RE:10099] [DI:direct] >gp:[GI:e1182076:g2632410] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:RNA polymerase (alpha subunit)] [GN:rpoA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.7.6] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to 213080.] [SP:P20429] [LE:148929]


[RE:149873] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24244012_c3_374
2625
6397
546
181
280
1.6e−24










Description


pir:[LN:C70048] [AC:C70048] [PN:conserved hypothetical protein yvsG]


[GN:yvsG] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1249789:g2832793]


[LN:BS43KBDNA] [AC:AJ223978] [PN:YvsG protein] [GN:yvsG] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 42.7 kB DNA fragment from


yvsA to yvqA.] [LE:5971] [RE:6453] [DI:complement]


>gp:[GI:e1186023:g2635848] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvsG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21): from 3399551 to 3609060.] [NT:similar to


hypothetical proteins] [LE:21284] [RE:21766] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24252318_c1_256
2626
6398
126
41
191
4.3e−15










Description


sp:[LN:RL36_BACST] [AC:P07841] [GN:RPMJ] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:(BL38)] [SP:P07841] [DB:swissprot] >pir:[LN:R5BS36] [AC:S08566:S59066]


[PN:ribosomal protein L36:ribosomal protein BL38:ribosomal protein II]


[CL:Escherichia coli ribosomal protein L36] [OR:Bacillus stearothermophilus]


[DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24328927_f1_39
2627
6399
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24337750_c2_312
2628
6400
981
326
1524
2.4e−156










Description


sp:[LN:LACD_STAAU] [AC:P11100] [GN:LACD] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.1.2.40] [DE:ALDOLASE) (D-TAGATOSE-1,6-BISPHOSPHATE ALDOLASE)]


[SP:P11100] [DB:swissprot] >pir:[LN:S04359] [AC:S04359] [PN:lacD protein]


[GN:lacD] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46606] [LN:SALACCD]


[AC:X14827] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus lacC and lacD genes.] [NT:lacD polypeptide (AA 1–326)] [SP:P11100]


[LE:991] [RE:1971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24339718_c2_335
2629
6401
483
160
93
0.033










Description


gp:[GI:e246715:g1617437] [LN:SGCOM7865] [AC:X98110] [PN:pheromone receptor]


[GN:comD2] [OR:Streptococcus gordonii] [DB:genpept-bct1] [DE:S. gordonii


tRNA-Arg, comC2, comD2 & comE2 genes.] [NT:histidine kinase] [LE:656]


[RE:2014] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24350953_f1_10
2630
6402
132
43
72
0.017










Description


pir:[LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24397127_c2_313
2631
6403
1776
591
2460
1.5e−255










Description


sp:[LN:PTLB_STAAU] [AC:P11162] [GN:LACE] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.1.69] [DE:(EC 2.7.1.69) (EII-LAC)] [SP:P11162] [DB:swissprot]


>pir:[LN:B28474] [AC:B28474] [PN:phosphotransferase system enzyme II,,


lactose-specific, factor II] [OR:Staphylococcus aureus] [EC:2.7.1.69]


[DB:pir2] >gp:[GI:g153038] [LN:STALACS] [AC:J03479:M17729]


[OR:Staphylococcus aureus] [SR:S. aureus (strain 8325-4) DNA, clone pFB34]


[DB:genpept-bct1] [DE:S. aureus enzyme III-lac (lacF), enzyme II-lac (lacE),


and phospho-beta-galactosidase (lacG) genes, complete cds.] [NT:enzyme II-lac


(lacE)] [LE:413] [RE:2131] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24402217_c3_350
2632
6404
405
134
560
3.4e−54










Description


sp:[LN:RS11_BACSU] [AC:P04969] [GN:RPSK] [OR:BACILLUS SUBTILIS] [DE:30S


RIBOSOMAL PROTEIN S11 (BS11)] [SP:P04969] [DB:swissprot] >pir:[LN:R3BSS1]


[AC:D32307:B24972:S11361:B69700] [PN:ribosomal protein S11:ribosomal


protein BS11] [GN:rpsK] [CL:Escherichia coli ribosomal protein S11]


[OR:Bacillus subtilis] [DB:pir1] >gp:[GI:g142462] [LN:BACALPHA] [AC:M26414]


[PN:ribosomal protein S11] [GN:rpsK] [OR:Bacillus subtilis] [SR:Bacillus


subtilis DNA] [DB:genpept-bct1] [DE:B. subtilis initiation factor 1,


ribosomal proteins B, S13, S11, L17 and RNA polymerase alpha core protein


genes, complete cds.] [LE:1009] [RE:1404] [DI:direct] >gp:[GI:g1044990]


[LN:BACRPLP] [AC:L47971] [PN:ribosomal protein S11] [GN:rpsK] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis ribosomal protein


(rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane protein (secY)


gene, adenylatekinase (adk) gene, methionine aminopeptidase (map)


gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA) gene.]


[LE:8583] [RE:8978] [DI:direct] >gp:[GI:g143451] [LN:BACRPOA] [AC:M13957]


[OR:Bacillus subtilis] [SR:B. subtilis (strain 168 Marburg) DNA clone


lambda-gt11-11-1] [DB:genpept-bct1] [DE:B. subtilis DNA sequence of the


rpsM-rpoA interval.] [NT:ribosomal protein S11] [LE:133] [RE:528]


[DI:direct] >gp:[GI:e1182075:g2632409] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:ribosomal protein S11 (BS11)] [GN:rpsK] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [SP:P04969] [LE:148357] [RE:148752] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24641927_c1_273
2633
6405
1380
459
978
1.7e−98










Description


sp:[LN:YKAA_BACFI] [AC:P30267] [OR:BACILLUS FIRMUS] [DE:HYPOTHETICAL 50.9 KD


PROTEIN IN KATA 3′REGION (ORF A)] [SP:P30267] [DB:swissprot]


>pir:[LN:S27491] [AC:S27491] [PN:hypothetical protein A] [OR:Bacillus


firmus] [DB:pir2] >gp:[GI:g143121] [LN:BACKATA2] [AC:L02548:M74194]


[OR:Bacillus firmus] [SR:Bacillus firmus DNA] [DB:genpept-bct1] [DE:B. firmus


ORF A and ORF B, complete cds.] [NT:ORF A; putative] [LE:225] [RE:1616]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24648312_f1_48
2634
6406
747
248
905
9.3e−91










Description


gp:[GI:g845686] [LN:STALACR] [AC:M32103] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain 8325-4) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus lac repressor (lacR) gene, complete cds and lacA


repressor (lacA), partial cds.] [NT:ORF-27] [LE:76] [RE:807] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24744040_c1_270
2635
6407
1065
354
361
4.1e−33










Description


gp:[GI:g4982168] [LN:AE001804] [AC:AE001804:AE000512] [PN:hypothetical


protein] [GN:TM1597] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 116 of 136 of the complete genome.]


[NT:similar to percent identity: 0.00; identified by] [LE:7299] [RE:8363]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24806662_c1_248
2636
6408
237
78
252
1.5e−21










Description


sp:[LN:RL29_BACSU] [AC:P12873] [GN:RPMC] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L29] [SP:P12873] [DB:swissprot] >pir:[LN:R5BS2L]


[AC:S05990:E69697] [PN:ribosomal protein L29] [GN:rpmC] [CL:Escherichia


coli ribosomal protein L29] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:g1044972] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein L29]


[GN:rpmC] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:142] [RE:342] [DI:direct] >gp:[GI:g40148] [LN:BSSPC] [AC:X15664]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis S10/spc operon rpmC,


rpsQ, rplN, rplX, rplE, rpsN genes.] [NT:L29 protein (AA 1–66)] [SP:P12873]


[LE:313] [RE:513] [DI:direct] >gp:[GI:e1182057:g2632391] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:ribosomal protein L29] [GN:rpmC] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [SP:P12873] [LE:139922] [RE:140122] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_24855303_c3_368
2637
6409
1047
348
784
6.2e−78










Description


pir:[LN:C69812] [AC:C69812] [PN:ferrichrome ABC transporter (permease)


homolog yfmD] [GN:yfmD] [CL:ferrichrome ABC transporter] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182741:g2633075] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfmD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ferrichrome ABC transporter


(permease)] [LE:21402] [RE:22403] [DI:complement] >gp:[GI:d1023181:g2443247]


[LN:D86417] [AC:D86417] [PN:YfmD] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb


genomic DNA, 70–73 degree region, complete cds.] [LE:26118] [RE:27119]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_25908568_c1_253
2638
6410
453
150
706
1.1e−69










Description


sp:[LN:RL15_STAAU] [AC:O06445] [GN:RPLO] [OR:STAPHYLOCOCCUS AUREUS] [DE:50S


RIBOSOMAL PROTEIN L15] [SP:O06445] [DB:swissprot] >gp:[GI:g2078381]


[LN:SAU96620] [AC:U96620] [PN:ribosomal protein L15] [GN:L15]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus NCTC


8325 ribosomal protein L30 (L30), ribosomal protein L15 (L15) and SecY (secY)


genes, complete cds.] [LE:261] [RE:701] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_26205151_f2_85
2639
6411
156
51
123
6.9e−08










Description


pir:[LN:B71245] [AC:B71245] [PN:hypothetical protein PH0220] [GN:PH0220]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030232:g3256606]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:171aa long hypothetical protein] [GN:PH0220] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).] [LE:192864]


[RE:193379] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_26360036_c3_345
2640
6412
387
128
429
2.6e−40










Description


sp:[LN:RL18_BACSU] [AC:P46899:P70969] [GN:RPLR] [OR:BACILLUS SUBTILIS]


[DE:50S RIBOSOMAL PROTEIN L18] [SP:P46899:P70969] [DB:swissprot]


>gp:[GI:g1044980] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein L18]


[GN:rplR] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:3198] [RE:3560] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_26773450_c1_249
2641
6413
285
94
380
4.0e−35










Description


sp:[LN:RS17_BACST] [AC:P23828] [GN:RPSQ] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:30S RIBOSOMAL PROTEIN S17] [SP:P23828] [DB:swissprot] >pir:[LN:S17865]


[AC:S17865:S59056] [PN:ribosomal protein S17] [GN:rps17] [CL:Escherichia


coli ribosomal protein S17] [OR:Bacillus stearothermophilus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_26776678_c2_290
2642
6414
372
123
431
1.6e−40










Description


sp:[LN:RL22_BACST] [AC:P23311] [GN:RPLV] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L22] [SP:P23311] [DB:swissprot] >pir:[LN:S10612]


[AC:S10612] [PN:ribosomal protein L22] [CL:Escherichia coli ribosomal


protein L22] [OR:Bacillus stearothermophilus] [DB:pir2] >gp:[GI:g40107]


[LN:BSRPLS] [AC:X54994] [PN:ribosomal protein L22] [OR:Bacillus


stearothermophilus] [DB:genpept-bct1] [DE:B. stearothermophilus gene for


ribosomal proteins L2, S19, L22, S3, and L16.] [SP:P23311] [LE:923] [RE:1264]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_2735801_c1_269
2643
6415
1848
615
274
1.3e−20










Description


sp:[LN:Y4XN_RHISN] [AC:P55706] [GN:Y4XN] [OR:RHIZOBIUM SP] [SR:NGR234,]


[DE:HYPOTHETICAL 71.0 KD PROTEIN Y4XN] [SP:P55706] [DB:swissprot]


>gp:[GI:g2182722] [LN:AE000106] [AC:AE000106:U00090] [PN:Y4xN] [GN:y4xN]


[OR:Rhizobium sp. NGR234] [DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid


pNGR234a, section 43 of 46 of the complete plasmid sequence.]


[NT:hypothetical 71 kd protein; similar to Escherichia] [LE:6573] [RE:8459]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_277312_c1_276
2644
6416
1353
450
452
9.4e−43










Description


gp:[GI:e1391039:g4467970] [LN:MXEGLBG] [AC:X76640] [PN:hypothetical protein]


[FN:transmembrane protein, putative] [OR:Myxococcus xanthus]


[DB:genpept-bct1] [DE:Myxococcus xanthus celA gene and ORFX.] [NT:ORFX]


[LE:669] [RE:2192] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_285808_f2_84
2645
6417
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_29314381_f2_151
2646
6418
138
45
79
0.0032










Description


pir:[LN:QQECR3] [AC:A04439] [PN:hypothetical protein E-116] [OR:Escherichia


coli] [DB:pir1] [MP:72 min]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_29328312_c2_289
2647
6419
339
112
431
1.6e−40










Description


gp:[GI:g4927744] [LN:AF126059] [AC:AF126059] [PN:RpS19] [GN:rpsS]


[OR:Streptococcus pneumoniae] [DB:genpept-bct2] [DE:Streptococcus pneumoniae


isolate R6 ribosomal protein operon, partial sequence.] [NT:30S ribosomal


protein S19] [LE:934] [RE:1215] [DI:direct] >gp:[GI:g4927753] [LN:AF126060]


[AC:AF126060] [PN:RpS19] [GN:rpsS] [OR:Streptococcus pneumoniae]


[DB:genpept-bct2] [DE:Streptococcus pneumoniae isolate ZR1 ribosomal protein


operon, partial sequence.] [NT:30S ribosomal protein S19] [LE:934] [RE:1215]


[DI:direct] >gp:[GI:g4927762] [LN:AF126061] [AC:AF126061] [PN:RpS19]


[GN:rpsS] [OR:Streptococcus pneumoniae] [DB:genpept-bct2] [DE:Streptococcus


pneumoniae isolate SP#5 ribosomal protein operon, partial sequence.] [NT:30S


ribosomal protein S19] [LE:934] [RE:1215] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_29562550_f3_218
2648
6420
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_30742165_c3_347
2649
6421
1323
440
1919
3.3e−198










Description


sp:[LN:SECY_STACA] [AC:Q05217] [GN:SECY] [OR:STAPHYLOCOCCUS CARNOSUS]


[DE:PREPROTEIN TRANSLOCASE SECY SUBUNIT] [SP:Q05217] [DB:swissprot]


>pir:[LN:S30115] [AC:S30115] [PN:preprotein translocase secY] [GN:secY]


[CL:preprotein translocase secY] [OR:Staphylococcus carnosus] [DB:pir2]


>gp:[GI:g49189] [LN:SCSECY] [AC:X70086:S47913:X68981] [GN:secY]


[OR:Staphylococcus carnosus] [DB:genpept-bct1] [DE:S. carnosus secY gene.]


[SP:Q05217] [LE:223] [RE:1515] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_3131677_f2_99
2650
6422
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_31377318_c1_246
2651
6423
291
96
297
2.5e−26










Description


sp:[LN:RL23_BACSU] [AC:P42924] [GN:RPLW] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L23] [SP:P42924] [DB:swissprot] >pir:[LN:A69697]


[AC:A69697] [PN:ribosomal protein L23] [GN:rplW] [CL:Escherichia coli


ribosomal protein L23] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:d1009466:g786155] [LN:BACRPL1] [AC:D50302] [PN:Ribosomal Protein


L23] [GN:rplW] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168)


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genes for ribosomal proteins


L13, L4, L23, L2, S19, L22, S3 and L16, partial and complete cds.] [LE:1140]


[RE:1427] [DI:direct] >gp:[GI:e1182051:g2632385] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:ribosomal protein L23] [GN:rplW] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 to 213080.] [SP:P42924] [LE:136990] [RE:137277] [DI:direct]


>gp:[GI:g1165305] [LN:BSU43929] [AC:U43929] [PN:L23] [GN:rplW] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis ribosomal protein gene


cluster, rpsJ, rplC, rplD, rplW, rplB, rpsS, rplV and rpsC genes, complete


cds, and rplP gene, partial cds.] [NT:ribosomal protein] [LE:1947] [RE:2234]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_3304562_c3_359
2652
6424
366
121
411
2.1e−38










Description


sp:[LN:PTLA_STAAU] [AC:P02909] [GN:LACF] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.1.69] [DE:(EC 2.7.1.69) (EIII-LAC)] [SP:P02909] [DB:swissprot]


>gp:[GI:g153037] [LN:STALACS] [AC:J03479:M17729] [OR:Staphylococcus aureus]


[SR:S. aureus (strain 8325-4) DNA, clone pFB34] [DB:genpept-bct1]


[DE:S. aureus enzyme III-lac (lacF), enzyme II-lac (lacE),


and phospho-beta-galactosidase (lacG) genes, complete cds.] [NT:enzyme


III-lac (lacF)] [LE:102] [RE:413] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_33437802_c2_299
2653
6425
669
222
772
1.2e−76










Description


sp:[LN:KAD_BACSU] [AC:P16304] [GN:ADK] [OR:BACILLUS SUBTILIS] [EC:2.7.4.3]


[DE:(SUPEROXIDE-INDUCIBLE PROTEIN 16) (SOI16)] [SP:P16304] [DB:swissprot]


>pir:[LN:JS0492] [AC:JS0492:S12684:S08630:E69583] [PN:adenylate


kinase,:ATP-AMP transphosphorylase] [GN:adk] [CL:adenylate kinase]


[OR:Bacillus subtilis] [EC:2.7.4.3] [DB:pir2] >gp:[GI:g1044985] [LN:BACRPLP]


[AC:L47971] [PN:adenylate kinase] [GN:adk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ribosomal protein (rplPNXEFROQ,


rpmCDJ, rpsQNHEMK) genes, integral membrane protein (secY) gene,


adenylatekinase (adk) gene, methionine aminopeptidase (map) gene, initiation


factor 1 (infA) gene, RNA polymerase alpha (rpoA) gene.] [LE:6101] [RE:6754]


[DI:direct] >gp:[GI:d1000951:g216340] [LN:BACSECY] [AC:D00619] [PN:adenylate


kinase] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:207–21) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genes for ribosomal proteins, SecY,


adenylatekinase and methionine amino peptidase, complete cds.] [LE:2055]


[RE:2708] [DI:direct] >gp:[GI:e1182070:g2632404] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:adenylate kinase] [GN:adk] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.4.3] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to 213080.] [SP:P16304] [LE:145875] [RE:146528]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_33463542_c2_337
2654
6426
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34017517_c2_304
2655
6427
828
275
714
1.6e−70










Description


pir:[LN:F69742] [AC:F69742] [PN:hypothetical protein ybaF] [GN:ybaF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182080:g2632414] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:ybaF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [LE:152128] [RE:152925] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34188213_c2_295
2656
6428
423
140
579
3.3e−56










Description


gp:[GI:g1044978] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein S8]


[GN:rpsH] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:2198] [RE:2596] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34406562_c1_259
2657
6429
867
288
644
4.2e−63










Description


pir:[LN:E69742] [AC:E69742] [PN:ABC transporter (ATP-binding protein)


homolog ybaE] [GN:ybaE] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182079:g2632413] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:ybaE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to 213080.] [NT:similar to ABC transporter (ATP-binding protein)]


[LE:151301] [RE:152131] [DI:direct] >gp:[GI:d1011642:g1644203] [LN:D64126]


[AC:D64126] [PN:unknown] [GN:orf5] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genes for


ribosomal proteins L13 and S9, putative cell wall hydrolase CwlD, gerD


protein, 16S ribosomal RNA and 23S ribosomal RNA.] [LE:861] [RE:1691]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34557262_c3_384
2658
6430
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34647177_c2_296
2659
6431
558
185
638
1.8e−62










Description


gp:[GI:d1039022:g4512419] [LN:AB017508] [AC:AB017508] [GN:rplF] [OR:Bacillus


halodurans] [SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1]


[DE:Bacillus halodurans C-125 genomic DNA, 32 kb fragment, complete cds.]


[NT:rplF homologue (identity of 78% to B. subtilis)] [LE:20357] [RE:20893]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_34651577_f2_127
2660
6432
1047
348
502
4.7e−48










Description


pir:[LN:D69756] [AC:D69756] [PN:conserved hypothetical protein yceB]


[GN:yceB] [CL:ynbW protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1023111:g2415739] [LN:AB000617] [AC:AB000617] [PN:YceB] [GN:yceB]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 22 to 25 degree region,


complete cds.] [NT:homologue of a hypothetical 36.6 kDa protein in]


[LE:23969] [RE:24910] [DI:complement] >gp:[GI:e1182240:g2632574]


[LN:BSUB0002] [AC:Z99105:AL009126] [GN:yceB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 2


of 21): from 194651 to 415810.] [NT:similar to hypothetical proteins]


[LE:115784] [RE:116725] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_35348182_f2_94
2661
6433
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_36135437_c2_287
2662
6434
648
215
676
1.7e−66










Description


sp:[LN:RL4_BACST] [AC:P28601] [GN:RPLD] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L4] [SP:P28601] [DB:swissprot] >pir:[LN:S24364]


[AC:S24364:S36086] [PN:ribosomal protein L4] [GN:rpl4] [CL:Escherichia


coli ribosomal protein L4] [OR:Bacillus stearothermophilus] [DB:pir2]


>gp:[GI:g40103] [LN:BSRPLCLD] [AC:X67014:S42397] [PN:ribosomal protein L4]


[GN:rp1D] [OR:Bacillus stearothermophilus] [DB:genpept-bct1]


[DE:B. stearothermophilus genes rplC and rplD for ribosomal proteins L3 and


L4, respectively.] [SP:P28601] [LE:724] [RE:1347] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_36226575_c1_251
2663
6435
558
185
766
5.0e−76










Description


sp:[LN:RL5_BACSU] [AC:P12877] [GN:RPLE] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L5 (BL6)] [SP:P12877] [DB:swissprot] >pir:[LN:R5BS5]


[AC:S05994:A69695] [PN:ribosomal protein L5:BL6] [GN:rplE] [CL:Escherichia


coli ribosomal protein L5] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:g1044976] [LN:BACRPLP] [AC:L47971] [PN:ribosomal protein L5]


[GN:rplE] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


ribosomal protein (rplPNXEFROQ, rpmCDJ, rpsQNHEMK) genes, integral membrane


protein (secY) gene, adenylatekinase (adk) gene, methionine aminopeptidase


(map) gene, initiation factor 1 (infA) gene, RNA polymerase alpha (rpoA)


gene.] [LE:1419] [RE:1958] [DI:direct] >gp:[GI:g40152] [LN:BSSPC]


[AC:X15664] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis S10/spc


operon rpmC, rpsQ, rplN, rplX, rplE, rpsN genes.] [NT:L5 protein (AA 1–179)]


[SP:P12877] [LE:1584] [RE:2123] [DI:direct] >gp:[GI:e1182061:g2632395]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:ribosomal protein L5 (BL6)] [GN:rplE]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [SP:P12877] [LE:141193]


[RE:141732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4062510_f3_217
2664
6436
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4100327_f3_181
2665
6437
360
119
133
6.0e−09










Description


pir:[LN:D69798] [AC:D69798] [PN:hypothetical protein yetG] [GN:yetG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182694:g2633028] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yetG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [LE:183921] [RE:184298] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4165677_c2_305
2666
6438
807
268
544
1.7e−52










Description


sp:[LN:TRUA_BACSU] [AC:P70973] [GN:TRUA] [OR:BACILLUS SUBTILIS]


[EC:4.2.1.70] [DE:I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE)]


[SP:P70973] [DB:swissprot] >pir:[LN:F69726] [AC:F69726] [PN:pseudouridylate


synthase I truA] [GN:truA] [CL:tRNA-pseudouridine synthase I] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182081:g2632415] [LN:BSUB0001]


[AC:Z99104:AL009126] [PN:pseudouridylate synthase I] [GN:truA] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:4.2.1.70] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [NT:alternate gene name: ybaH]


[SP:P70973] [LE:152935] [RE:153678] [DI:direct] >gp:[GI:d1011645:g1644206]


[LN:D64126] [AC:D64126] [PN:unknown] [GN:orf8] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis genes for ribosomal proteins L13 and S9, putative cell wall


hydrolase CwlD, gerD protein, 16S ribosomal RNA and 23S ribosomal RNA.]


[LE:2496] [RE:3239] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4305287_f3_211
2667
6439
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4564036_c3_363
2668
6440
1044
347
898
5.2e−90










Description


pir:[LN:A69813] [AC:A69813] [PN:quinone oxidoreductase homolog yfmJ]


[GN:yfmJ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182735:g2633069]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfmJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21): from 802821 to 1011250.] [NT:similar to quinone oxidoreductase]


[LE:14498] [RE:15517] [DI:complement] >gp:[GI:d1023187:g2443253] [LN:D86417]


[AC:D86417] [PN:YfmJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 35.7 kb genomic


DNA, 70–73 degree region, complete cds.] [LE:33004] [RE:34023] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4694030_c3_367
2669
6441
1236
411
362
3.2e−33










Description


gp:[GI:g5354197] [LN:AF157493] [AC:AF157493] [PN:putative transporter]


[GN:ditE] [OR:Zymomonas mobilis] [DB:genpept] [DE:Zymomonas mobilis ZM4


fosmid clone 42D7, complete sequence.] [LE:17549] [RE:18844] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4697262_c2_310
2670
6442
540
179
806
2.9e−80










Description


pir:[LN:D43258] [AC:D43258] [PN:galactose-6-phosphate isomerase subunit


LacB] [OR:Streptococcus mutans] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4714817_c2_315
2671
6443
879
292
200
1.0e−14










Description


gp:[GI:g4206189] [LN:LLU60828] [AC:U60828] [PN:unknown] [OR:Lactococcus


lactis] [DB:genpept-bct2] [DE:Lactococcus lactis galactose-lactose operon,


complete sequence.] [NT:orfx] [LE:12631] [RE:13554] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4886592_c3_341
2672
6444
450
149
614
6.4e−60










Description


sp:[LN:RL16_BACSU] [AC:P14577] [GN:RPLP] [OR:BACILLUS SUBTILIS] [DE:50S


RIBOSOMAL PROTEIN L16] [SP:P14577] [DB:swissprot] >pir:[LN:B69696]


[AC:B69696:S05989] [PN:ribosomal protein L16 (rplP)] [GN:rplP]


[CL:Escherichia coli ribosomal protein L16] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182056:g2632390] [LN:BSUB0001] [AC:Z99104:AL009126] [PN:ribosomal


protein L16] [GN:rplP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [LE:139498]


[RE:139932] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4897202_c1_257
2673
6445
768
255
996
2.1e−100










Description


sp:[LN:RPOA_BACS5] [AC:O50634] [GN:RPOA] [OR:BACILLUS SP] [SR:C-125,]


[EC:2.7.7.6] [DE:ALPHA CHAIN) (RNA POLYMERASE ALPHA SUBUNIT)] [SP:O50634]


[DB:swissprot] >gp:[GI:d1025104:g2760185] [LN:AB010082] [AC:AB010082]


[PN:RNA polymerase alpha subunit] [GN:rpoA] [OR:Bacillus halodurans]


[SR:Bacillus halodurans (strain:C-125) DNA] [DB:genpept-bct1] [DE:Bacillus


halodurans C-125 gene for initiation factor IF-I, RNA polymerase alpha


subunit and ribosomal proteins, partial and complete cds.] [LE:1701]


[RE:2645] [DI:direct] >gp:[GI:d1039034:g4512431] [LN:AB017508] [AC:AB017508]


[GN:rpoA] [OR:Bacillus halodurans] [SR:Bacillus halodurans (strain:C-125)


DNA] [DB:genpept-bct1] [DE:Bacillus halodurans C-125 genomic DNA, 32 kb


fragment, complete cds.] [NT:rpoA homologue (identity of 85% to B. subtilis)]


[LE:26934] [RE:27878] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4897253_f3_189
2674
6446
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_4901712_c1_261
2675
6447
408
135
496
2.0e−47










Description


pir:[LN:H69699] [AC:H69699:S11359] [PN:ribosomal protein S9


(rpsI):ribosomal protein BS10] [GN:rpsI] [CL:Escherichia coli ribosomal


protein S9] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182083:g2632417]


[LN:BSUB0001] [AC:Z99104:AL009126] [PN:ribosomal protein S9] [GN:rpsI]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to 213080.] [SP:P21470] [LE:154299]


[RE:154691] [DI:direct] >gp:[GI:d1011647:g1644208] [LN:D64126] [AC:D64126]


[PN:ribosomal protein S9] [GN:rpsI] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genes for


ribosomal proteins L13 and S9, putative cell wall hydrolase CwlD, gerD


protein, 16S ribosomal RNA and 23S ribosomal RNA.] [LE:3860] [RE:4252]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_5110637_c2_306
2676
6448
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_5189012_f1_55
2677
6449
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_55437_c2_314
2678
6450
1428
475
2439
2.6e−253










Description


sp:[LN:LACG_STAAU] [AC:P11175] [GN:LACG] [OR:STAPHYLOCOCCUS AUREUS]


[EC:3.2.1.85] [DE:GALACTOHYDROLASE) (PGALASE) (P-BETA-GAL) (PBG)]


[SP:P11175] [DB:swissprot] >pir:[LN:A27233] [AC:A27233]


[PN:beta-galactosidase,:lactase] [CL:Agrobacterium beta-glucosidase]


[OR:Staphylococcus aureus] [EC:3.2.1.23] [DB:pir2] >gp:[GI:g153039]


[LN:STALACS] [AC:J03479:M17729] [OR:Staphylococcus aureus] [SR:S. aureus


(strain 8325-4) DNA, clone pFB34] [DB:genpept-bct1] [DE:S. aureus enzyme


III-lac (lacF), enzyme II-lac (lacE), and phospho-beta-galactosidase (lacG)


genes, complete cds.] [NT:phospho-beta-galactosidase (lacG)] [LE:2149]


[RE:3561] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_6854675_f1_20
2679
6451
279
92
119
1.8e−07










Description


pir:[LN:A69895] [AC:A69895] [PN:hypothetical protein ynzG] [GN:ynzG]


[CL:hypothetical protein yolF] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1183408:g2634133] [LN:BSUB0010] [AC:Z99113:AL009126] [GN:ynzG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 10 of 21): from 1781201 to 2014980.] [LE:99142]


[RE:99393] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_797308_f2_112
2680
6452
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_812840_c1_260
2681
6453
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000996_9771907_c2_334
2682
6454
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_10406642_f1_38
2683
6455
342
113
165
2.8e−12










Description


sp:[LN:NARQ_BACSU] [AC:P39756] [GN:NARQ:NARAA] [OR:BACILLUS SUBTILIS]


[DE:NARQ PROTEIN] [SP:P39756] [DB:swissprot] >pir:[LN:B69665] [AC:B69665]


[PN:required for formate dehydrogenase activity narQ] [GN:narQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e276834:g1648855] [LN:BSATPC]


[AC:Z81356] [PN:unknown] [GN:narQ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis atpC gene.] [SP:P39756] [LE:7048] [RE:7836] [DI:direct]


>gp:[GI:g580895] [LN:BSNARAAB] [AC:Z35277] [PN:unknown] [GN:narAA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis (168) narA gene.]


[SP:P39756] [LE:490] [RE:1278] [DI:direct] >gp:[GI:e1184577:g2636196]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:narQ] [FN:required for formate


dehydrogenase activity] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [NT:alternate gene name: narAA] [SP:P39756] [LE:175331]


[RE:176119] [DI:complement] >gp:[GI:e1184577:g2636196] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:narQ] [FN:required for formate dehydrogenase


activity] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis complete


genome (section 19 of 21): from 3597091 to 3809700.] [NT:alternate gene name:


narAA] [SP:P39756] [LE:175331] [RE:176119] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_1054640_f3_189
2684
6456
213
70
170
7.2e−13










Description


sp:[LN:NARQ_BACSU] [AC:P39756] [GN:NARQ:NARAA] [OR:BACILLUS SUBTILIS]


[DE:NARQ PROTEIN] [SP:P39756] [DB:swissprot] >pir:[LN:B69665] [AC:B69665]


[PN:required for formate dehydrogenase activity narQ] [GN:narQ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e276834:g1648855] [LN:BSATPC]


[AC:Z81356] [PN:unknown] [GN:narQ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis atpC gene.] [SP:P39756] [LE:7048] [RE:7836] [DI:direct]


>gp:[GI:g580895] [LN:BSNARAAB] [AC:Z35277] [PN:unknown] [GN:narAA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis (168) narA gene.]


[SP:P39756] [LE:490] [RE:1278] [DI:direct] >gp:[GI:e1184577:g2636196]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:narQ] [FN:required for formate


dehydrogenase activity] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091 to


3809700.] [NT:alternate gene name: narAA] [SP:P39756] [LE:175331]


[RE:176119] [DI:complement] >gp:[GI:e1184577:g2636196] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:narQ] [FN:required for formate dehydrogenase


activity] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis complete


genome (section 19 of 21): from 3597091 to 3809700.] [NT:alternate gene name:


narAA] [SP:P39756] [LE:175331] [RE:176119] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_10580182_f1_9
2685
6457
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_10646887_f1_25
2686
6458
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_11756250_f3_197
2687
6459
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_11767205_f3_213
2688
6460
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_1209800_c2_304
2689
6461
282
93
72
0.0011










Description


sp:[LN:LACF_AGRRD] [AC:P29823] [GN:LACF] [OR:AGROBACTERIUM RADIOBACTER]


[DE:LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN LACF] [SP:P29823]


[DB:swissprot] >pir:[LN:MMAGCF] [AC:S25248:S22740] [PN:membrane protein


lacF] [GN:lacF] [CL:inner membrane protein ugpA] [OR:Agrobacterium


radiobacter] [DB:pir1] >gp:[GI:g38969] [LN:ARLACOP]


[AC:X66596:S40378:S40757] [GN:lacF] [OR:Agrobacterium radiobacter]


[DB:genpept-bct1] [DE:A. radiobacter lac operon.] [SP:P29823] [LE:1897]


[RE:2793] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_12270176_c2_349
2690
6462
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_12595175_f2_140
2691
6463
498
165
261
1.6e−22










Description


sp:[LN:YKKC_BACSU] [AC:P49856] [GN:YKKC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 11.9 KD PROTEIN IN HMP 3′REGION] [SP:P49856] [DB:swissprot]


>pir:[LN:A69857] [AC:A69857] [PN:chaperonin homolog ykkC] [GN:ykkC]


[CL:sugE protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1011924:g1063251] [LN:BAC168TRP2] [AC:D78189] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis hmp DNA for 7 ORFs, complete cds.] [NT:unnamed protein


product] [LE:4724] [RE:5062] [DI:direct] >gp:[GI:e1181509:g2632029]


[LN:BSAJ2571] [AC:AJ002571] [PN:YkkC] [GN:ykkC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment


between xlyA and ykoR.] [SP:P49856] [LE:28642] [RE:28980] [DI:direct]


>gp:[GI:e1183329:g2633663] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykkC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21): from 1194391 to 1411140.] [NT:similar to


chaperonin] [SP:P49856] [LE:181591] [RE:181929] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_1375308_c2_341
2692
6464
411
136
103
9.0e−06










Description


gp:[GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis staphylococcal accessory


regulator A homolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_13849056_c1_251
2693
6465
279
92
79
0.041










Description


gp:[GI:e1313955:g3392923] [LN:LLNISG] [AC:AJ000993] [PN:hypothetical


protein] [GN:orfD] [OR:Lactococcus lactis] [DB:genpept-bct1] [DE:Lactococcus


lactis nisG gene, orfA, orfB, orfC, and orfD.] [LE:3153] [RE:4799]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_1406552_c1_252
2694
6466
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14094002_c2_303
2695
6467
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14097586_f3_201
2696
6468
438
145
470
1.2e−44










Description


sp:[LN:URE2_STAXY] [AC:P42874] [GN:UREB] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:3.5.1.5] [DE:UREASE BETA SUBUNIT, (UREA AMIDOHYDROLASE)] [SP:P42874]


[DB:swissprot] >pir:[LN:S38484] [AC:S38484] [PN:urease, beta chain]


[CL:urease 12K chain:urease 12K chain homology] [OR:Staphylococcus xylosus]


[EC:3.5.1.5] [DB:pir1] >gp:[GI:g410515] [LN:SXUREABC] [AC:X74600] [PN:urease


beta subunit] [GN:ureB] [OR:Staphylococcus xylosus] [DB:genpept-bct1]


[DE:S. xylosus gene for ureA, ureB, and ureC genes for urease gamma, beta and


alpha subunits.] [SP:P42874] [LE:886] [RE:1299] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14220635_c3_380
2697
6469
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14454632_c2_289
2698
6470
177
58
226
8.4e−19










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14460882_f1_23
2699
6471
189
62
221
2.8e−18










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14501888_f2_129
2700
6472
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000997_14549010_c2_339
2701
6473
666
221
531
4.0e−51










Description


gp:[GI:e1429630:g4756162] [LN:A67171] [AC:A67171] [FN:MOBA GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:4821] [RE:5411] [DI:direct]


>gp:[GI:g3955208] [LN:AF022796] [AC:AF022796] [PN:MobA] [GN:mobA]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic gene cluster, complete sequence.]


[NT:protein similar to MobA of Escherichia coli] [LE:7042] [RE:7632]


[DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_14550133_f1_14
2702
6474
543
180










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_15820176_f3_207
2703
6475
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_16129817_f1_68
2704
6476
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_19533567_f2_100
2705
6477
264
87
80
0.0025










Description


gp: [GI:g5306165] [LN:AF160864] [AC:AF160864] [PN:orf98] [GN:orf98]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf71 (CPGN); ATT initiation] [LE:37598] [RE:37894]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_20112790_c3_399
2706
6478
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_20345067_c3_365
2707
6479
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_2126925_f3_211
2708
6480
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_21611592_f3_236
2709
6481
369
122
89
0.0017










Description


pir: [LN:E71805] [AC:E71805] [PN:protein-export membrane protein] [GN:secF]


[CL:Escherichia coli preprotein translocase chain secF] [OR:Helicobacter


pylori] [SR:strain J99, , strain J99] [SR:strain J99,] [DB:pir2]


>gp:[GI:g4156068] [LN:AE001567] [AC:AE001567:AE001439] [PN:PROTEIN-EXPORT


MEMBRANE PROTEIN] [GN:secF] [OR:Helicobacter pylori J99] [DB:genpept-bct2]


[DE:Helicobacter pylori, strain J99 section 128 of 132 of the


complete genome.] [NT:similar to H. pylori 26695 gene HP1549] [LE:9115]


[RE:10086] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_21646015_f2_104
2710
6482
210
69
158
1.3e−11










Description


gp: [GI:g1022725] [LN:SHU35635] [AC:U35635]  [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp: [GI:g295162] [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) geneand unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_21675050_f3_230
2711
6483
360
119










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_21681561_f1_74
2712
6484
891
296
776
4.4e−77










Description


pir: [LN:D69744] [AC:D69744] [PN:conserved hypothetical protein ybbI]


[GN:ybbI] [CL:conserved hypothetical protein b2428] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1182103:g2632437] [LN:BSUB0001] [AC:Z99104:AL009126]


[GN:ybbI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to213080.] [NT:similar to


hypothetical proteins] [LE:192050] [RE:192964] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_21776942_c1_244
2713
6485
642
213
855
1.9e−85










Description


sp: [LN:YBXG_BACSU] [AC:P54425:O31438] [GN:YBXG:YBDP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSPORT PROTEIN IN NDHF-CSGA INTERGENIC REGION (ORF1)]


[SP:P54425:O31438] [DB:swissprot] >pir: [LN:H69751] [AC:H69751:PC6045]


[PN:amino acid permease homolog ybxG] [GN:ybxG] [CL:arginine permease]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1034070:g3599629] [LN:AB006424]


[AC:AB006424] [GN:ybdP] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23degree.] [LE:29556] [RE:30944] [DI:direct]


>gp: [GI:e1182158:g2632492] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ybxG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [NT:alternate gene


name: ybdP; similar to amino acid] [SP:P54425] [LE:31905] [RE:33293]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_2211433_f3_205
2714
6486
867
288
534
1.9e−51










Description


sp: [LN:URED_BACSB] [AC:Q07400] [GN:URED] [OR:BACILLUS SP] [SR:TB-90,]


[DE:UREASE ACCESSORY PROTEIN URED] [SP:Q07400] [DB:swissprot]


>pir: [LN:G36950] [AC:G36950] [PN:ureD protein] [OR:Bacillus sp.] [DB:pir2]


>gp: [GI:d1003839:g216366] [LN:BACUREA] [AC:D14439] [PN:urease accessory


protein] [GN:UreD] [OR:Bacillus sp.] [SR:Bacillus sp. (strain:TB-90) DNA]


[DB:genpept-bct1] [DE:Thermophilic Bacillus genes for urease subunits and


ureaseaccessory proteins, complete cds.] [LE:4281] [RE:5096] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_22290657_c3_382
2715
6487
387
128
164
3.1e−12










Description


gp: [GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis staphylococcal accessory


regulator Ahomolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_22455337_f3_217
2716
6488
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_22692177_c1_271
2717
6489
537
178
556
9.0e−54










Description


gp: [GI:e1429621:g4756159] [LN:A67171] [AC:A67171] [FN:MOAB GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:1150] [RE:1662] [DI:direct]


>gp: [GI:g3955202] [LN:AF022796] [AC:AF022796] [PN:MoaB] [GN:moaB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to MoaB of Escherichia coli] [LE:3371] [RE:3883]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_22734582_c2_293
2718
6490
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_23538332_f1_18
2719
6491
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_23609628_c2_330
2720
6492
975
324
385
1.2e−35










Description


gp: [GI:g2645495] [LN:AF017231] [AC:AF017231]


[PN:inosine-adenosine-guanosine-nucleoside] [FN:catalyzes the hydrolysis of


the N-ribosidic] [OR:Trypanosoma brucei brucei] [DB:genpept-inv1]


[DE:Trypanosoma brucei brucei


inosine-adenosine-guanosine-nucleosidehydrolase mRNA, complete cds.]


[NT:N-ribohydrolase; IAG-nucleoside hydrolase] [LE:187] [RE:1170]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI750300997_23620260_c2_311
2721
6493
1107
368
334
3.0e−30










Description


sp: [LN:ODH_ARTSP] [AC:Q44297] [GN:ODH] [OR:ARTHROBACTER SP] [SR:1C,]


[EC:l.5.1.28] [DE:OPINE DEHYDROGENASE,] [SP:Q44297] [DB:swissprot]


>pir: [LN:I39664] [AC:I39664] [PN:probable D-octopine dehydrogenase,]


[OR:Arthrobacter sp.] [EC:1.5.1.11] [DB:pir2] >gp:[GI:d1008736:g1060848]


[LN:ARGOD] [AC:D45211] [PN:opine dehydrogenase] [OR:Arthrobacter sp.]


[SR:Arthrobacter sp. DNA, clone pODH1] [DB:genpept-bct1] [DE:Arthrobacter


sp. gene for opine dehydrogenase, complete cds.] [LE:254] [RE:1333]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_23631551_c3_395
2722
6494
792
263










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_23642167_f3_175
2723
6495
1218
405
611
1.3e−59










Description


pir: [LN:B70065] [AC:B70065] [PN:antibiotic resistance protein homolog ywoG]


[GN:ywoG] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1184551:g2636170]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywoG] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21): from 3597091to 3809700.] [NT:similar to antibiotic resistance


protein] [LE:151451] [RE:152641] [DI:direct] >gp: (GI:e283116:g1684651]


[LN:BSZ82987] [AC:Z82987] [PN:unknown similar to quinolon resistance


protein] [GN:ywoG] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


ywo[A,B,C,D,E,F,G,H], nrg[A,B], spoIIID and mb1 genes.] [LE:8662] [RE:9852]


[DI:complement] >gp: [GI:e1184551:g2636170] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywoG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:similar to antibiotic resistance protein]


[LE:151451] [RE:152641] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_23678262_c3_394
2724
6496
573
190
370
4.6e−34










Description


pir: [LN:B69832] [AC:B69832] [PN:biotin biosynthesis homolog yhfU] [GN:yhfU]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1183039:g2633373] [LN:BSUB0006]


[AC:Z99109:AL009126] [GN:yhfU] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6 of 21):


from 999501 to1209940.] [NT:similar to biotin biosynthesis] [LE:111897]


[RE:112457] [DI:complement] >gp: [GI:e325000:g2226257] [LN:BSY14084]


[AC:Y14084] [PN:hypothetical protein] [GN:yhfu] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis chromosomal DNA, region 78–80 degrees: aprE


to comK.] [NT:similarity to BioY from Bacillus sphaericus (Swiss] [LE:6325]


[RE:6885] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24104677_c2_291
2725
6497
1656
551
1619
2.0e−166










Description


sp: [LN:PTIB_BACSU] [AC:P54715] [GN:GLVC:GLVCB:GLV-2] [OR:BACILLUS SUBTILIS]


[EC:2.7.1.69] [DE:II, BC COMPONENT),] [SP:P54715] [DB:swissprot]


>pir: [LN:G69635] [AC:G69635] [PN:PTS arbutin-like enzyme IIBC component


glvC] [GN:glvC] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1182810:g2633144]


[LN:BSUB0005] [AC:Z99108:AL009126] [PN:phosphotransferase system (PTS)


arbutin-like] [GN:glvC] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 5 of 21): from 802821


to1011250.] [NT:alternate gene name: yfiB] [SP:P54715] [LE:88901] [RE:90484]


[DI:direct] >gp: [GI:d1009740:g1486243] [LN:D50543] [AC:D50543] [PN:unknown]


[GN:glv-2] [FN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168, haplotype:haploid) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA for 76-degree region, complete cds.] [LE:2577] [RE:4160] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24257012_c1_268
2726
6498
735
244
927
4.4e−93










Description


gp: [GI:g3955199] [LN:AF022796] [AC:AF022796] [PN:ModB] [GN:modB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:integral membrane-spanning protein of the] [LE:906] [RE:1577]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_24303812_c3_352
2727
6499
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24314818_c2_340
2728
6500
1035
344
1410
2.9e−144










Description


gp: [GI:e1429633:g4756163] [LN:A67171] [AC:A67171] [PN:MOPA GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [LE:5470] [RE:6492] [DI:direct] >gp: [GI:g3955209] [LN:AF022796]


[AC:AF022796] [PN:MoaA] [GN:moaA] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus molybdenum cofactor


biosynthetic genecluster, complete sequence.] [NT:protein similar to MoaA of


Escherichia coli] [LE:7691] [RE:8713] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_24406502_f2_127
2729
6501
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24406577_c2_346
2730
6502
3156
1051
2317
2.2e−240










Description


pir: [LN:E69795] [AC:E69795] [PN:acriflavin resistance protein homolog yerP]


[GN:yerP] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182651:g2632985]


[LN:BSUB0004] [AC:Z99107:AL009126] [GN:yerP] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4


of 21): from 600701 to813890.] [NT:similar to acriflavin resistance protein]


[LE:131722] [RE:134919] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24431532_c1_277
2731
6503
1254
417
1796
3.6e−185










Description


gp: [GI:g4574235] [LN:AF106850] [AC:AF106850] [PN:FmhB] [GN:fmhB]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus FmhB


(fmhB) gene, complete cds.] [NT:similar to Staphylococcus aureus FemA and


FemE] [LE:204] [RE:1469] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24616251_f2_148
2732
6504
696
231
139
2.6e−07










Description


gp: [GI:g567887] [LN:STMDNRN] [AC:L37338] [PN:putative repressor] [GN:dnrO]


[OR:Streptomyces peucetius] [SR:Streptomyces peucetius ATCC 29050 DNA]


[DB:genpept-bct2] [DE:Streptomyces peucetius TDP-D-glucose-4,6-dehydratase


(dnrM) gene,3′ end, regulatory protein (dnrN) gene, complete cds, and


repressorprotein (dnrO) gene, complete cds.] [NT:putative] [LE:1085]


[RE:2107] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_24644008_c3_396
2733
6505
792
263
911
2.2e−91










Description


gp: [GI:g3955198] [LN:AF022796] [AC:AF022796] [PN:ModA] [GN:modA]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:molybdate-binding lipoprotein of the] [LE:109] [RE:894] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_24650452_f1_64
2734
6506
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_24804077_c3_358
2735
6507
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_25430317_c1_274
2736
6508
492
163
446
4.1e−42










Description


gp: [GI:g3955205] [LN:AF022796] [AC:AF022796] [PN:MobB] [GN:mobB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to MobB of Escherichia coli] [LE:5873] [RE:6355]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_25443838_c2_305
2737
6509
789
262
448
2.5e−42










Description


gp: [GI:d1023468:g2506027] [LN:D42078] [AC:D42078] [GN:NAG]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus DNA for N-acetyl-glucosaminidase, partialcds.]


[LE:<1] [RE:1448] [DI:direct] >gp: [GI:d1023468:g2506027] [LN:D42078]


[AC:D42078] [GN:NAG] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


DNA] [DB:genpept] [DE:Staphylococcus aureus DNA for


N-acetyl-glucosaminidase, partialcds.] [LE:<1] [RE:1448] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_25548385_f1_7
2738
6510
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_25554213_f1_49
2739
6511
627
208
943
8.8e−95










Description


sp: [LN:UREG_STAXY] [AC:P42877] [GN:UREG] [OR:STAPHYLOCOCCUS XYLOSUS]


[DE:UREASE ACCESSORY PROTEIN UREG] [SP:P42877] [DB:swissprot]


>gp: [GI:g511070] [LN:SXUREFG] [AC:Z35136] [PN:UreG] [OR:Staphylococcus


xylosus] [DB:genpept-bct1] [DE:S.xylosus (C2a) UreF and UreG genes.]


[SP:P42877] [LE:781] [RE:1395] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_25582885_f1_22
2740
6512
453
150
153
4.6e−11










Description


pir: [LN:C70065] [AC:C70065] [PN:transcription regulator MarR family homolog


ywoH] [GN:ywoH] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1184550:g2636169]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywoH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21): from 3597091to 3809700.] [NT:similar to transcriptional regulator


(MarR family)] [LE:151016] [RE:151429] [DI:direct] >gp: [GI:e283130:g1684652]


[LN:BSZ82987] [AC:Z82987] [PN:unknown, similar to cytolysin SlyA from]


[GN:ywoH] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis


ywo[A,B,C,D,EF,G,HJ, nrg[A,B], spoIIID and mb1 genes.] [LE:9874] [RE:10287]


[DI:complement] >gp: [GI:e1184550:g2636169] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywoH] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:similar to transcriptional regulator (MarR family)]


[LE:151016] [RE:151429] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_25679762_c1_248
2741
6513
831
276
374
1.7e−34










Description


sp: [LN:SUHB_BACSU] [AC:Q45499] [GN:SUHB] [OR:BACILLUS SUBTILIS]


[DE:EXTRAGENIC SUPPRESSOR PROTEIN SUHB HOMOLOG] [SP:Q45499] [DB:swissprot]


>pir: [LN:E69864] [AC:E69864] [PN:myo-inositol-1(or 4)-monophosphatase


homolog yktC] [GN:yktC] [CL:suppressor protein suhB] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1185057:g2633838] [LN:BSUB0008] [AC:Z99111:AL009126]


[GN:yktC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 8 of 21): from 1394791to 1603020.]


[NT:similar to myo-inositol-1(or 4)-monophosphatase] [SP:Q45499] [LE:142056]


[RE:142853] [DI:direct] >gp: [GI:g3282150] [LN:AF012285]


[AC:AF0122285:AF012284:U51911] [PN:unknown] [GN:yktC] [FN:unknown]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE


gene region.] [NT:similar to E. coli extragenic suppressor protein]


[LE:42544] [RE:43341] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_26182800_c1_276
2742
6514
813
270
90
0.045










Description


sp: [LN:YCX3_ASTLO] [AC:P34778] [OR:ASTASIA LONGA] [SR:,EUGLENOPHYCEAN ALGA]


[DE:HYPOTHETICAL 20.1 KD PROTEIN IN TRNS-RPL20 INTERGENIC REGION (ORF170)]


[SP:P34778] [DB:swissprot] >pir: [LN:538600] [AC:538600] [PN:hypothetical


protein 170 [rp120 5′ region)] [OR:plastid Astasia longa] [DB:pir2]


>gp: [GI:g414866] [LN:ALRIBPTR] [AC:X75653] [GN:orf170] [OR:Chloroplast


Astasia longa] [SR:euglenophycean alga] [DB:genpept-pln1] [DE:A.longa


plastid genes for ribosomal proteins and tRNAs.] [SP:P34778] [LE:1985]


[RE:2497] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_26367127_f1_44
2743
6515
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_26375031_f1_8
2744
6516
195
64
86
0.015










Description


pir: [LN:A70387] [AC:A70387] [PN:conserved hypothetical protein aq_1006]


[GN:aq_1006] [OR:Aquifex aeolicus] [DB:pir2] >gp: [GI:g2983515]


[LN:AE000718] [AC:AE000718:AE000657] [PN:hypothetical protein] [GN:aq_1006]


[OR:Aquifex aeolicus] [DB:genpept-bct2] [DE:Aquifex aeolicus section 50 of


109 of the complete genome.] [LE:2797] [RE:5733] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_26758426_c2_316
2745
6517
750
249
121
2.8e−07










Description


gp: [GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis staphylococcal accessory


regulator Ahomolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_29494067_c3_356
2746
6518
213
70
50
0.031










Description


pir: [LN:PC1133] [AC:PC1133:S18087] [PN:hypothetical protein 119 (rmpG 5′


region)] [OR:Lactococcus lactis] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_29697752_c2_302
2747
6519
786
261
499
9.8e−48










Description


sp: [LN:LYTR_BACSU] [AC:Q02115] [GN:LYTR] [OR:BACILLUS SUBTILIS]


[DE:MEMBRANE-BOUND PROTEIN LYTR] [SP:Q02115] [DB:swissprot] >pir: [LN:A47679]


[AC:A47679:H69654] [PN:lyt divergon expression attenuator LytR] [GN:lytR]


[CL:Bacillus subtilis probable transcription regulator yvhJ] [OR:Bacillus


subtilis] [DB:pir2] >gp: [GI:g143156] [LN:BACLYTABCD] [AC:M87645]


[PN:membrane bound protein] [GN:lytR] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain W168) DNA] [DB:genpept-bct1] [DE:Bacillus subtillis


membrane bound protein (lytA and lytR) ; amidaseenhancer (lytB); and amidase


(lytC) genes, complete cds's.) [LE:92] [RE:1012] [DI:complement]


>gp: [GI:e1184471:g2636091] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:membrane-bound protein] [GN:lytR] [FN:attenuator role for lytABC and


lytR expression] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091to 3809700.]


[SP:Q02115] [LE:65251] [RE:66171] [DI:direct] >gp: [GI:e1184471:g2636091]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:membrane-bound protein] [GN:lytR]


[FN:attenuator role for lytABC and lytR expression] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [SP:Q02115] [LE:65251] [RE:66171] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_31284550_f3_237
2748
6520
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_3250075_f3_220
2749
6521
1008
335
705
1.5e−69










Description


pir: [LN:A71175] [AC:A71175] [PN:probable dehydrogenase] [GN:PH0597]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp: [GI:d1030629:g3257003]


[LN:AP000002]


[AC:AP000002:AB009475:AB009476:AB009477:AB009478:AB009479:AB009480]


[PN:376aa long hypothetical dehydrogenase] [GN:PH0597] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1]


[DE:Pyrococcus horikoshii OT3 genomic DNA, 287001–544000 nt. position (2/7) .]


[NT:similar to owl:BSZ9404317 percent identity: 49.821] [LE:248539]


[RE:249669] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_33360910_f3_216
2750
6522
549
182
120
1.4e−07










Description


pir: [LN:S74932] [AC:S74932] [PN:hypothetical protein slr0686]


[OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp: [GI:d1017705:g1652047] [LN:D90902] [AC:D90902:AB001339] [PN:hypothetical


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 4/27,


402290–524345.] [NT:ORF_ID:slr0686] [LE:27521] [RE:27880] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_33694505_f3_198
2751
6523
162
53
47
0.0063










Description


gp: [GI:d1042768:g5103471] [LN:AP000058] [AC:AP000058] [PN:102aa long


hypothetical protein] [GN:APE0083] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 1/7.] [LE:56764] [RE:57072] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_3371062_f1_10
2752
6524
333
110
90
0.0034










Description


gp: [GI:g1040951] [LN:AOU35271] [AC:U35271] [PN:NADH dehydrogenase subunit 6]


[OR:Mitochondrion Anopheles oswaldoi] [SR:Anopheles oswaldoi]


[DB:genpept-inv1] [DE:Anopheles oswaldoi NADH dehydrogenase subunit 6 gene,


mitochondrialgene encoding mitochondrial product, partial cds.] [LE:<1]


[RE:525] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_34192165_f1_63
2753
6525
345
114
264
7.9e−23










Description


pir: [LN:B69857] [AC:B69857] [PN:chaperonin homolog ykkD] [GN:ykkD]


[CL:sugE protein] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:e1181510:g2632030] [LN:BSAJ2571] [AC:AJ002571] [PN:YkkD] [GN:ykkD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


168 56 kb DNA fragment between xlyA and ykoR.] [LE:28980] [RE:29297]


[DI:direct] >gp: [GI:e1183330:g2633664] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:ykkD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21): from 1194391to 1411140.]


[NT:similar to chaperonin] [LE:181929] [RE:182246] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_34411552_f2_123
2754
6526
1722
573
2703
2.8e−281










Description


sp: [LN:URE1_STAXY] [AC:P42873] [GN:UREC] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:3.5.1.5] [DE:UREASE ALPHA SUBUNIT, (UREA AMIDOHYDROLASE)] [SP:P42873]


[DB:swissprot] >pir: [LN:S38485] [AC:538485] [PN:urease, 62K chain:urease


alpha chain] [GN:ureC] [CL:urease 62K chain:urease 62K chain homology]


[OR:Staphylococcus xylosus] [EC:3.5.1.5] [DB:pir2] >gp: [GI:g410516]


[LN:SXUREABC] [AC:X74600] [PN:urease alpha subunit] [GN:ureC]


[OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:S.xylosus gene for ureA,


ureB, and ureC genes for urease gamma,beta and alpha subunits.] [SP:P42873]


[LE:1296] [RE:3011] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_34430_f2_96
2755
6527
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_34431300_c2_300
2756
6528
774
257
139
2.8e−09










Description


gp: [GI:d1011987:g1402529] [LN:D78257] [AC:D78257] [PN:ORF8] [GN:orf8]


[OR:Enterococcus faecalis] [SR:Enterococcus faecalis plasmid:pYI17 DNA]


[DB:genpept-bct1] [DE:Enterococcus faecalis plasmid pYI17 genes for BacA,


BacB, ORF3,ORF4, ORF5, ORF6, ORF7, ORF8, ORF9, ORF10, ORF11,partial cds.]


[LE:1899] [RE:2261] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_34617187_f2_156
2757
6529
207
68
74
0.00010










Description


gp: [GI:g4164553] [LN:AF081828] [AC:AF081828] [PN:NADH dehydrogenase 6]


[OR:Mitochondrion Ixodes hexagonus] [SR:Ixodes hexagonus] [DB:genpept-inv2]


[DE:Ixodes hexagonus mitochondrial DNA, complete genome.] [LE:9406]


[RE:9831] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_35191527_f1_19
2758
6530
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_35319025_f3_200
2759
6531
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_35547892_f3_218
2760
6532
156
51
161
8.5e−12










Description


gp: [GI:g2735506] [LN:SCU96107] [AC:U96107] [PN:SceB precursor] [GN:sceB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


N5,N10-methylenetetrahydromethanopterinreductase homolog, SceB precursor


(sceB) and putative transmembraneprotein genes, complete cds, and putative


Na+/H+ antiporter NhaC(nhaC) gene, partial cds.] [NT:major secreted protein]


[LE:1894] [RE:2685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_35572051_f1_72
2761
6533
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_36017151_f2_110
2762
6534
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_36113805_c1_245
2763
6535
750
249
775
5.6e−77










Description


sp: [LN:YBXG_BACSU] [AC:P54425:O31438] [GN:YBXG:YBDP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL TRANSPORT PROTEIN IN NDHF-CSGA INTERGENIC REGION (ORF1)]


[SP:P54425:O31438] [DB:swissprot] >pir: [LN:H69751] [AC:H69751:PC6045]


[PN:amino acid permease homolog ybxG] [GN:ybxG] [CL:arginine permease]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1034070:g3599629] [LN:AB006424]


[AC:AB006424] [GN:ybdP] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23degree.] [LE:29556] [RE:30944] [DI:direct]


>gp: [GI:e1182158:g2632492] [LN:BSUB0002] [AC:Z99105:AL00912E] [GN:ybxG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [NT:alternate gene


name: ybdP; similar to amino acid] [SP:P54425] [LE:31905] [RE:33293]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_36132792_c3_402
2764
6536
255
84
218
5.9e−18










Description


gp: [GI:e1429627:g4756161] [LN:A67171] [AC:A67171] [PN:MOAD GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [LE:4583] [RE:4816] [DI:direct] >gp: [GI:g3955207] [LN:AF022796]


[AC:AF022796] [PN:MoaD] [GN:moaD] [OR:Staphylococcus carnosus]


[DB:genpept-bct2] [DE:Staphylococcus carnosus molybdenum cofactor


biosynthetic genecluster, complete sequence.] [NT:protein similar to MoaD of


Escherichia coli] [LE:6804] [RE:7037] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_36134427_c1_241
2765
6537
657
218
251
1.9e−21










Description


sp: [LN:YHCW_BACSU] [AC:P54607] [GN:YHCW] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 24.7 KD PROTEIN IN CSPB-GLPP INTERGENIC REGION] [SP:P54607]


[DB:swissprot] >pir: [LN:C69824] [AC:C69824] [PN:phosphoglycolate


phosphatase homolog yhcW] [GN:yhcW] [CL:hypothetical protein b2690]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e233881:g1239999] [LN:BS75DGREG]


[AC:X96983] [PN:hypothetical protein] [GN:yhcW] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis chromosomal DNA (region 75 degrees: cspB


upstream ofglpPFKD operon) .] [NT:similarity to phosphoglycolate phosphatase


from] [SP:P54607] [LE:18604] [RE:19266] [DI:direct]


>gp: [GI:e1l82913:g2633247] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhcW]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to1011250.] [NT:similar to


phosphoglycolate phosphatase] [SP:P546071 [LE:194410] [RE:195072]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_36209660_f2_116
2766
6538
378
125










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_36225625_f1_56
2767
6539
795
264
1034
2.0e−104










Description


gp: [GI:e244971:g1340128] [LN:SA1234] [AC:X97985] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S.aureus orfs 1,2,3 & 4.] [NT:ORF1] [LE:537] [RE:1304]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_36615903_c2_329
2768
6540
1164
387
1007
1.5e−101










Description


pir: [LN:H69771] [AC:H69771] [PN:butyryl-CoA dehydrogenase homolog ydbM]


[GN:ydbM] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1020042:g188l262]


[LN:AB001488] [AC:AB001488] [GN:ydbM] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the regionbetween 35 and 47 degree.]


[NT:SIMILAR TO ACYL-COA DEHYDROGENASE.] [LE:38215] [RE:39360] [DI:direct]


>gp: [GI:e1182418:g2632752] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydbM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to611850.] [NT:similar to


butyryl-CoA dehydrogenase] [LE:101959] [RE:103104] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_3943752_f2_128
2769
6541
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_3947153_f3_204
2770
6542
456
151
482
6.2e−46










Description


sp: [LN:UREE_BACSB] [AC:Q07401] [GN:UREE] [OR:BACILLUS SP] [SR:TB-90,]


[DE:UREASE ACCESSORY PROTEIN UP.EE] [SP:Q07401] [DB:swissprot]


>pir: [LN:D36950] [AC:D36950] [PN:ureE protein] [OR:Bacillus sp.] [DB:pir2]


>gp: [GI:d1003836:g393297] [LN:BACUREA] [AC:D14439] [PN:urease accessory


protein] [GN:UreE] [OR:Bacillus sp.] [SR:Bacillus sp. (strain:TB-90) DNA]


[DB:genpept-bct1] [DE:Thermophilic Bacillus genes for urease subunits and


ureaseaccessory proteins, complete cds.] [LE:2521] [RE:2967] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_3991557_f1_55
2771
6543
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4042327_c3_390
2772
6544
918
305
309
1.3e−27










Description


gp: [GI:g1322222] [LN:HSU35735] [AC:U35735] [PN:RACH1] [GN:RACH1] [OR:Homo


sapiens] [SR:human] [DB:genpept-pri2] [DE:Human RACH1 (RACH1) mRNA, complete


cds.] [LE:169] [RE:1338] [DI:direct].
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4086568_c3_381
2773
6545
1983
660
130
1.8e−07










Description


sp: [LN:SOXS_ECOLI] [AC:P22539] [GN:SOXS] [OR:ESCHERICHIA COLI]


[DE:REGULATORY PROTEIN SOXS] [SP:P22539] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_42500_f1_24
2774
6546
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_4459380_f1_84
2775
6547
207
68










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_44595905_c2_343
2776
6548
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4486693_f2_92
2777
6549
804
267
976
2.8e−98










Description


gp: [GI:e324856:g2226002] [LN:SXY14043] [AC:Y14043]


[PN:glucose-1-dehydrogenase] [GN:gdh] [OR:Staphylococcus xylosus]


[DB:genpept-bct1] [DE:Staphylococcus xylosus glcU and gdh genes.] [LE:1222]


[RE:2013] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4491450_f2_150
2778
6550
873
290
310
1.0e−27










Description


gp: [GI:g4980827] [LN:AE001714] [AC:AE001714:AE000512] [PN:transcriptional


regulator, RpiR family] [GN:TM0326] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 26 of 136 of the complete


genome.] [NT:similar to SP:P46118 PID:881368 GB:U00096] [LE:3706] [RE:4548]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4547163_f1_48
2779
6551
699
232
741
2.2e−73










Description


sp: [LN:UREF_STAXY] [AC:P42876] [GN:UREF] [OR:STAPHYLOCOCCUS XYLOSUS]


[DE:UREASE ACCESSORY PROTEIN UREF] [SP:P42876] [DB:swissprot]


>gp: [GI:g511069] [LN:SXUREFG] [AC:Z35136] [PN:UreF] [OR:Staphylococcus


xylosus] [DB:genpept-bct1] [DE:S.xylosus (C2a) UreF and UreG genes.]


[SP:P42876] [LE:79] [RE:648] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_4569012_f1_79
2780
6552
588
195










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_4720290_f2_145
2781
6553
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_4720928_f1_11
2782
6554
186
61










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_4726550_f2_143
2783
6555
177
58










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4800202_c1_269
2784
6556
621
206
694
2.1e−68










Description


gp: [GI:g3955200] [LN:AF022796] [AC:AF022796] [PN:ModC] [GN:modC]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:ATP-binding protein of the molybdate-specific ABC] [LE:1578] [RE:2186]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4804153_f1_33
2785
6557
690
229
618
2.4e−60










Description


gp: [GI:e1429636:g4756164] [LN:A67171] [AC:A67171] [FN:MOAC GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:1846] [RE:2331] [DI:complement]


>gp: [GI:g3955203] [LN:AF022796] [AC:AF022796] [PN:MoaC] [GN:moaC]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to MoaC of Escherichia coli] [LE:4067] [RE:4552]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4876675_f2_122
2786
6558
399
132
430
2.0e−40










Description


sp: [LN:URE3_STAXY] [AC:P42875] [GN:UREA] [OR:STAPHYLOCOCCUS XYLOSUS]


[EC:3.5.1.5] [DE:UREASE GAMMA SUBUNIT, (UREA AMIDOHYDROLASE)] [SP:P42875]


[DB:swissprot] >pir: [LN:538483] [AC:538483] [PN:urease, 11K chain:urease


gamma chain] [CL:urease 11K chain:urease 11K chain homology]


[OR:Staphylococcus xylosus] [EC:3.5.1.5] [DB:pir2] >gp: [GI:g581787]


[LN:SXUREABC] [AC:X74600] [PN:urease gamma subunit] [GN:ureA]


[OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:S.xylosus gene for ureA,


ureB, and ureC genes for urease gamma,beta and alpha subunits.] [SP:P42875]


[LE:568] [RE:870] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4884662_c3_367
2787
6559
1128
375
333
1.0e−32










Description


gp: [GI:e1393931:g4490992] [LN:5CE29] [AC:AL035707] [PN:putative salicylate


hydroxylase] [GN:5CE29.14c] [OR:Streptomyces coelicolor] [DB:genpept-bct1]


[DE:Streptomyces coelicolor cosmid E29.] [NT:5CE29.14c, possible salicylate


hydroxylase, len:] [LE:19076] [RE:20338] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_4976687_c1_281
2788
6560
924
307
232
1.9e−19










Description


gp: [GI:g4980727] [LN:AE001707] [AC:AE001707:AE000512] [PN:conserved


hypothetical protein] [GN:TM0229] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 19 of 136 of the complete genome.]


[NT:similar to GB:L77117 PID:1591686 percent identity:] [LE:5630] [RE:6487]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_5082812_c2_310
2789
6561
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_5087556_c2_335
2790
6562
849
282
990
9.2e−100










Description


gp: [GI:el429618:g4756158] [LN:A67171] [AC:A67171] [FN:MOEB GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:117] [RE:1118] [DI:direct]


>gp: [GI:g395520l] [LN:AF022796] [AC:AF022796] [PN:MoeB] [GN:moeB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to the molybdopterin synthase] [LE:2338] [RE:3339]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_5113550_f2_149
2791
6563
1089
362
269
2.3e−23










Description


pir: [LN:C70217] [AC:C70217] [PN:outer surface protein homolog] [OR:Borrelia


burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2] >gp: [GI:g2689897]


[LN:AE000792] [AC:AE000792] [PN:outer surface protein, putative] [GN:BBB07]


[OR:Borrelia burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2]


[DE:Borrelia burgdorferi plasmid cp26, complete plasmid sequence.]


[NT:similar to GB:M88764 SP:Q09090 PID:469166] [LE:4769] [RE:5866]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_5266018_f2_160
2792
6564
771
256
415
7.8e−39










Description


sp: [LN:YFIA_BACSU] [AC:P547l7] [GN:YFIA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 29.3 KD PROTEIN IN GLVG-GLVBC INTERGENIC REGION]


[SP:P54717] [DB:swissprot] >pir: [LN:D69802] [AC:D69802] [PN:conserved


hypothetical protein yfiA] [GN:yfiA] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:e1l82809:g2633l43] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfiA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to1011250.] [NT:similar to


hypothetical proteins] [SP:P54717] [LE:88122] [RE:88886] [DI:direct]


>gp: [GI:d1009739:g1486242] [LN:D50543] [AC:D50543] [PN:unknown] [GN:yfiA]


[FN:unknown] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168,


haplotype:haploid) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


76-degree region, complete cds.] [LE:1798] [RE:2562] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_5898328_f2_91
2793
6565
864
287
1102
1.2e−111










Description


gp: [GI:e324855:g2226001] [LN:SXY14043] [AC:Y14043] [PN:glucose uptake


protein] [GN:glcU] [OR:Staphylococcus xylosus] [DB:genpept-bct1]


[DE:Staphylococcus xylosus glcU and gdh genes.] [LE:306] [RE:1172]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_6050010_c3_404
2794
6566
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_6757755_f2_121
2795
6567
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_6929676_c1_255
2796
6568
342
113










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_7031318_f2_153
2797
6569
339
112










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_7086677_c3_364
2798
6570
243
80
78
0.019










Description


sp: [LN:LY4F_MOUSE] [AC:Q60653] [GN:LY49F:LY-49F:LY49-F] [OR:MUS MUSCULUS]


[SR:,MOUSE] [DE:T-CELL SURFACE GLYCOPROTEIN LY-49F (LY49-F ANTIGEN)]


[SP:Q60653] [DB:swissprot] >pir: [LN:149051] [AC:149051] [PN:Ly-49F-GE


antigen] [OR:Mus musculus] [SR:, house mouse] [DB:pir2] >gp: [GI:g533492]


[LN:MMU10092] [AC:U10092] [PN:Ly-49F-GE antigen] [OR:Mus musculus] [SR:house


mouse] (DB:genpept-rod] [DE:Mus musculus C57BL/6 Ly-49F-GE antigen mRNA,


complete cds.] [LE:81] [RE:881] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_818812_c2_337
2799
6571
1287
428
1560
3.6e−160










Description


gp: [GI:e1429624:g4756160] [LN:A67171] [AC:A67171] [FN:MOEA GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:2396] [RE:3655] [DI:direct]


>gp: [GI:g3955204] [LN:AF022796] [AC:AF022796] [PN:MoeA] [GN:moeA]


[OR:Staphylococcus carnosus] [DB genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to MoeA of Escherichia coli] [LE:4617] [RE:5876]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_829761_c1_288
2800
6572
2172
723
1751
2.1e−180










Description


pir: [LN:H69724] [AC:H69724] [PN:DNA topoisomerase III topB] [GN:topB]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1020016:g1881236] [LN:AB001488]


[AC:AB001488] [PN:PROBABLE DNA TOPOISOMERASE III] [GN:topB] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1]


[EC:5.99.1.2] [DE:Bacillus subtilis genome sequence, 148 kb sequence of the


regionbetween 35 and 47 degree.] [LE:9617] [RE:11800] [DI:direct]


>gp: [GI:e1182392:g2632726] [LN:BSUB0003] [AC:Z99106:AL009126] [PN:DNA


topoisomerase III] [GN:topB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:5.99.1.2] [DE:Bacillus subtilis complete genome (section 3 of 21): from


402751 to611850.] [LE:73361] [RE:75544] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_834686_c2_290
2801
6573
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_959427_f1_62
2802
6574
417
138
241
2.2e−20










Description


gp: [GI:g2735506] [LN:5CU96107] [AC:U96107] [PN:SceB precursor] [GN:sceB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


N5,N10-methylenetetrahydromethanopterinreductase homolog, SceB precursor


(sceB) and putative transmembraneprotein genes, complete cds, and putative


Na+/H+ antiporter NhaC(nhaC) gene, partial cds.] [NT:major secreted protein]


[LE:1894] [RE:2685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_964077_c1_275
2803
6575
453
150
659
1.1e−64










Description


gp: [GI:g3955206] [LN:AF022796] [AC:AF022796] [PN:MoaE] [GN:moaE]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


ENT:protein similar to MoaE of Escherichia coli] [LE:6352] [RE:6804]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_975061_c3_377
2804
6576
1455
484
916
6.4e−92










Description


sp: [LN:YB07_HAEIN] [AC:Q57007:P96339] [GN:H11107] [OR:HAEMOPHILUS


INFLUENZAE] [DE:HYPOTHETICAL NA+/H+ ANTIPORTER H11107] [SP:Q57007:P96339]


[DB:swissprot] >pir: [LN:164182] [AC:I64182] [PN:Na+/H+-exchanging protein


homolog:Na+/H+ antiporter] [CL:Na+/H+-exchanging protein] [OR:Haemophilus


influenzae] [DB:pir2] >gp: [GI:g1574661] [LN:U32790] [AC:U32790:L42023]


[PN:Na+/H+ antiporter (nhaC)] [GN:H11107] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 105 of 163 of the


completegenome.] [NT:similar to GB:M73530 SP:P27611 PID:143245] [LE:7526]


[RE: 8932] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000997_9845631_f3_222
2805
6577
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_9928188_f1_39
2806
6578
132
43
95
0.00025










Description


sp: [LN:NARQ_BACSU] [AC:P39756] [GN:NARQ:NARAA] [OR:BACILLUS SUBTILIS]


[DE:NARQ PROTEIN] [SP:P39756] [DB:swissprot] >pir: [LN:B69665] [AC:B69665]


[PN:required for formate dehydrogenase activity narQ] [GN:narQ]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e276834:g1648855] [LN:BSATPC]


[AC:Z81356] [PN:unknown] [GN:narQ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B.subtilis atpC gene.] [SP:P39756] [LE:7048] [RE:7836] [DI:direct]


>gp: [GI:g580895] [LN:BSNAPAAB] [AC:Z352773 [PN:unknown] [GN:narAA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis (168) narA gene.]


[SP:P39756] [LE:490] [RE:1278] [DI:direct] >gp: [GI:e1184577:g2636196]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:narQ] [FN:required for formate


dehydrogenase activity] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091to


3809700.] [NT:alternate gene name: narAA] [SP:P39756] [LE:175331]


[RE:176119] [DI:complement] >gp: [GI:e1184577:g2636196] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:narQ] [FN:required for formate dehydrogenase


activity] [OR:Bacillus subtilis] EDB:genpept] [DE:Bacillus subtilis complete


genome (section 19 of 21): from 3597091to 3809700.] [NT:alternate gene name:


narAA] [SP:P39756] [LE:175331] [RE:176119] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_9928500_c1_270
2807
6579
261
86
286
3.7e−25










Description


gp: [GI:e1429618:g4756158] [LN:A67171] [AC:A67171] [FN:MOEB GENE]


[OR:Staphylococcus carnosus] [DB:genpept-pat] [DE:Sequence 11 from Patent


EP0805205.] [NT:unnamed protein product] [LE:117] [RE:1118] [DI:direct]


>gp: [GI:g3955201] [LN:AF022796] [AC:AF022796] [PN:MoeB] [GN:moeB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


molybdenum cofactor biosynthetic genecluster, complete sequence.]


[NT:protein similar to the molybdopterin synthase] [LE:2338] [RE:3339]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000997_9977318_f1_75
2808
6580
1437
478
700
4.9e−69










Description


pir: [LN:D65017] [AC:D65017] [PN:hypothetical protein b2429]


[CL:phosphotransferase system sucrose-specific enzyme II, factor II]


[OR:Escherichia coli] [DB:pir2] >gp: [GI:d1017042:g1799859] [LN:D90872]


[AC:D90872:AB001340] [PN:PTS SYSTEM, SUCROSE-SPECIFIC IIBC COMPONENT]


[GN:IPA-49D] [OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone_lib:Kohara lambda minise] [DB:genpept-bct1] [DE:E.coli genomic DNA,


Kohara clone #419(54.7–55.1 min.).] [NT:similar to [SwissProt Accession


Number P05306] ] [LE:9801] [RE:11225] [DI:direct] >gp: [GI:d1017045:g1799863]


[LN:D90873] [AC:D90873:AB001340] [PN:PTS SYSTEM, SUCROSE-SPECIFIC IIBC


COMPONENT] [GN:IPA-49D] [OR:Escherichia coli] [SR:Escherichia coli


(strain:K12) DNA, clone_lib:Kohara lambda minise] [DB:genpept-bct1]


[DE:E.coli genomic DNA, Kohara clone #420(54.9–55.2 min.).] [NT:similar to


[SwissProt Accession Number P05306] ] [LE:611] [RE:2035] [DI:direct]


>gp: [GI:g1788769] [LN:AE000330] [AC:AE000330:U00096] [PN:putative PTS enzyme


II] [GN:b2429] [FN:putative enzyme; Not classified] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 220 of 400 of the


completegenome.] [NT:o474; 33 pct identical (29 gaps) to 436 residues]


[LE:5237] [RE:6661] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_10159760_f1_50
2809
6581
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_10312805_f3_197
2810
6582
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_10646950_c1_238
2811
6583
1221
406
1151
8.0e−117










Description


pir: [LN:A69974] [AC:A69974] [PN:cystathionine gamma-synthase homolog yrhB]


[GN:yrhB] [CL:O-succinylhomoserine (thiol)-lyase] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:g1934606] [LN:BSU93874] [AC:U93874] [PN:cystathionine


gamma-lyase] [GN:yrhB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis cysteine synthase (yrhA), cystathioninegamma-lyase (yrhB), YrhC


(yrhC), YrhD (yrhD), formate dehydrogenasechain A (yrhE), YrhF (yrhF),


formate dehydrogenase (yrhG), YrhH(yrhH), regulatory protein (yrhI),


cytochrome P450 102 (yrhJ), YrhK(yrhK), hypothetical protein YrhL (yrhL),


putative anti-SigV factor(yrhM), RNA polymerase sigma factor SigV (sigV) and


YrhO (yrhO)genes, complete cds, and YrhP (yrhP) gene, partial cds.]


[NT:similar to Rattus norvegicus cystathionine] [LE:986] [RE:2125]


[DI:direct] >gp: [GI:e1183955:g2635171] [LN:BSUB0014] [AC:Z99117:AL009126]


[GN:yrhB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 14 of 21): from 2599451to 2812870.]


[NT:similar to cystathionine gamma-synthase] [LE:184821] [RE:185960]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_10723177_f1_59
2812
6584
255
84










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7303000998_11213532_c3_351
2813
6585
246
81
90
0.00022










Description


gp: [GI:g208931] [LN:SYNORFLAC] [AC:M15619] [OR:synthetic construct]


[SR:E.coli (strain SE5000) synthetic DNA, clone pKB1] [DB:genpept-syn]


[DE:Synthetic E.coli ORF16/lacZ fusion protein, partial cds.] [NT:ORF16-lacZ


fusion protein] [LE:29] [RE:>232] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_1178785_c3_323
2814
6586
939
312
731
2.6e−72










Description


pir: [LN:H69973] [AC:H69973] [PN:cysteine synthase homolog yrhA] [GN:yrhA]


[CL:threonine dehydratase] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:g1934605] [LN:BSU93874] [AC:U93874] [PN:cysteine synthase] [GN:yrhA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis cysteine


synthase (yrhA), cystathioninegamma-lyase (yrhB) , YrhC (yrhC) , YrhD (yrhD) ,


formate dehydrogenasechain A (yrhE) , YrhF (yrhF) , formate dehydrogenase


(yrhG) , YrhH(yrhH) , regulatory protein (yrhI) , cytochrome P450 102 (yrhJ) ,


YrhK(yrhK) , hypothetical protein YrhL (yrhL) , putative anti-SigV


factor(yrhM) , RNA polymerase sigma factor SigV (sigV) and YrhO (yrhO)genes,


complete cds, and YrhP (yrhP) gene, partial cds.] [NT:similar to cysteine


synthase from Spinacia] [LE:61] [RE:984] [DI:direct]


>gp: [GI:e1183956:g2635172] [LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrhA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 14 of 21): from 2599451to 2812870.] [NT:similar to


cysteine synthase] [LE:185962] [RE:186885] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_11931540_f2_96
2815
6587
825
274
786
3.8e−78










Description


sp: [LN:YLAC_STAXY] [AC:033812] [OR:STAPHYLOCOCCUS XYLOSUS] [DE:HYPOTHETICAL


TRANSCRIPTIONAL REGULATOR IN LACR 5′REGION (FRAGMENT)] [SP:033812]


[DB:swissprot] >gp: [G1:e352090:g2462703] [LN:SXLACRPH] [AC:Y14599]


[PN:transcriptional regulator from the LysR-type] [OR:Staphylococcus


xylosus] [DB:genpept-bct1] [DE:Staphylococcus xylosus lacR, lacP, lacH genes


and 2 ORF's.] [NT:ORF1] [SP:033812] [LE:<1] [RE:814] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_1256387_c2_297
2816
6588
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_12603166_f2_86
2817
6589
303
100
100
1.9e−05










Description


pir: [LN:G7l244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp: [GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN: 106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7) .] [LE:191072]


[RE:191392] [DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_126068_f1_46
2818
6590
555
184
164
3.4e−11










Description


pir: [LN:A71661] [AC:A71661] [PN:hypothetical protein RP563] [GN:RP563]


[OR:Rickettsia prowazekii] [DB:pir2] >gp: [GI:e1342855:g3861111] [LN:RPXX03]


[AC:AJ235272:AJ235269] [PN:unknown] [GN:RP563] [OR:Rickettsia prowazekii]


[DB:genpept-bct1] [DE:Rickettsia prowazekii strain Madrid E, complete


genome; segment3/4.] [LE:110476] [RE:112242] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_13089052_f3_214
2819
6591
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_13678300_c2_267
2820
6592
1233
410
1393
1.8e−142










Description


pir: [LN:B69760] [AC:B69760] [PN:conserved hypothetical protein yciC]


[GN:yciC] [CL:conserved hypothetical protein yciC] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1182288:g2632622] [LN:BSUB0002] [AC:Z99105:AL009126]


[GN:yciC] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 2 of 21): from 194651 to415810.]


[NT:similar to hypothetical proteins] [LE:170984] [RE:172177] [DI:direct]


>gp: [GI:d1009605:g1805408] [LN:D50453] [AC:D50453] [PN:homologues to nitrile


hydratase region] [GN:yciC] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


25–36 degree region containing theamyE-srfA region, complete cds.]


[LE:45287] [RE:46480] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_13912712_c3_312
2821
6593
150
49
52
0.015










Description


sp: [LN:IMM1_ECOLI] [AC:P02985] [GN:IMM] [OR:ESCHERICHIA COLI] [DE:COLICIN E1


IMMUNITY PROTEIN (IMME1) (MICROCIN E1 IMMUNITY PROTEIN)] [SP:P02985]


[DB:swissprot] >gp: [GI:g455140] [LN:CE1CEA] [AC:M12543] [OR:Plasmid ColE1]


[SR:Plasmid ColE1 (a colicin-producing derivative strain from E.col]


[DB:genpept-bct1] [DE:Plasmid ColE1 cea (3′ end), imm and lys genes


(complete cds) .] [NT:immunity protein] [LE:32] [RE:373] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_13923427_f3_196
2822
6594
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_14218805_c2_301
2823
6595
129
42
80
0.0095










Description


sp: [LN:TRER_BACSU] [AC:P39796] [GN:TRER] [OR:BACILLUS SUBTILIS]


[DE:TREHALOSE OPERON TRANSCRIPTIONAL REPRESSOR] [SP:P39796] [DB:swissprot]


>pir: [LN:JC5038] [AC:JC5038:567931:D69725:I40499:567866] [PN:transcription


repressor of trehalose operon treR] [GN:treR] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:g1000453] [LN:BSTREAPR] [AC:Z54245] [PN:TreR] [GN:treR]


[FN:repressor of the trehalose operon] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis treA, treP and treR genes.] [NT:position


3684 corresponds to position 2543 of] [SP:P39796] [LE:3352] [RE:4068]


[DI:direct] >gp: [GI:e1182772:g2633106] [LN:BSUB0005] [AC:Z99108:AL009126]


[PN:transcriptional regulator (GntR family)] [GN:treR] [FN:negative


regulation of the trehalose operon] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 5 of 21): from 802821


to1011250.] [NT:alternate gene name: yfxA] [SP:P39796] [LE:50243] [RE:50959]


[DI:direct] >gp: [GI:d1024286:g2626829] [LN:D83967] [AC:D83967] [PN:TreR]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:AC327) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 74 degree region.]


[LE:16962] [RE:17678] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_14271068_f1_51
2824
6596
261
86
68
0.018










Description


sp: [LN:PROP_ECOLI] [AC:P30848] [GN:PROP] [OR:ESCHERICHIA COLI]


[DE:PROLINE/BETAINE TRANSPORTER (PROLINE PORTER II) (PPII)] [SP:P30848]


[DB:swissprot] >pir: [LN:532331] [AC:S32331:S56339:F65220]


[PN:proline/betaine transport protein:proline permease II:proline porter II]


[GN:proP] [CL:citrate utilization determinant] [OR:Escherichia coli]


[DB:pir2] [MP:93 min] >gp: [GI:g147357] [LN:ECOPROBETT] [AC:M83089] [PN:a


proline/betaine transporter] [GN:proP] [FN:active uptake of proline or


betaine] [OR:Escherichia coli] [DB:genpept-bct1] [DE:E. coli proline/betaine


transporter (proP) gene, complete cds.] [NT:Evidence that this open reading


frame encodes a] [LE:433] [RE:1935] [DI:direct] >gp: [GI:g536955]


[LN:ECOUW93] [AC:U14003] [GN:proP] [FN:active uptake of proline or betaine]


[OR:Escherichia coli] [DB:genpept-bct1] [DE:Escherichia coli K-12


chromosomal region from 92.8 to 00.1 minutes.] [NT:CG Site No. 361]


[LE:21331] [RE:22833] [DI:direct] >gp: [GI:g1790550] [LN:AE000483]


[AC:AE000483:U00096] [PN:low-affinity transport system; proline permease]


[GN:proP] [FN:transport; Transport of small molecules: Amino]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 373 of 400 of the completegenome.] [NT:o500; 100 pct identical to


PROP_ECOLI SW: P30848;] [LE:5301] [RE:6803] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_14460882_c1_217
2825
6597
1695
564
1304
4.9e−133










Description


gp: [GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, completecds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_14485686_c2_287
2826
6598
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_15022153_f1_73
2827
6599
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_15900305_f3_177
2828
6600
789
262
78
0.019










Description


gp: [GI:g453517] [LN:TETRRTRNA] [AC:L28677] [OR:Mitochondrion Tetrahymena


pyriformis] [SR:Mitochondrion Tetrahymena pyriformis (strain ST, organell]


(DB:genpept-inv1] [DE:Tetrahymena pyriformis ribosomal RNA; tRNA-Trp; ORF


1–4; tRNA-Glu;cytochrome oxidase subunit 1; NADH dehydrogenase; ribosomal


proteinLl4.] [NT:ORF3] [LE:4384] [RE:4680] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_16196963_f2_133
2829
6601
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_16257665_f1_37
2830
6602
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_16281286_c3_322
2831
6603
1359
452
1059
4.5e−107










Description


pir: [LN:F69825] [AC:F69825] [PN:sodium-dependent transporter homolog yhdH]


[GN:yhdH] [CL:gamma-aminobutyric acid transporter] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1l82948:g2633282] [LN:BSUBQ0006] [AC:Z99109:AL009126]


[GN:yhdH] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 6 of 21): from 999501 to1209940.]


[NT:similar to sodium-dependent transporter] [LE:24845] [RE:26200]


[DI:direct] >gp: [GI:e1191879:g2226203] [LN:BSY14082] [AC:Y14082]


[PN:hypothetical protein] [GN:yhdH] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis chromosomal DNA, region 72 to 75 degrees: spoVRto


sspB.] [NT:Similarity to sodium dependent transporters;] [LE:11493]


[RE:12848] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_19712762_c3_347
2832
6604
600
199
813
5.2e−81










Description


sp: [LN:RECR_BACSU] [AC:P24277] [GN:RECR:RECM:RECD] [OR:BACILLUS SUBTILIS]


[DE:RECOMBINATION PROTEIN RECR] [SP:P24277] [DB:swissprot] >pir: [LN:B69691]


[AC:B69691:S13788:S66051] [PN:DNA repair and genetic recombination


recR:recM protein] [GN:recR] [CL:recR protein] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:dl005799:g467411] [LN:BAC180K] [AC:D26185]


[PN:recombination protein] [GN:recR] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:92467]


[RE:93063] [DI:direct] >gp: [GI:g453239] [LN:BSRECM] [AC:X17014] [GN:recR]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis dnaZX and


recR genes and two unidentified readingframes.] [SP:P24277] [LE:2314]


[RE:2910] [DI:direct] >gp: [GI:e1181954:g2632288] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:recR] [FN:DNA repair and genetic recombination]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 1 of 21): from 1 to213080.] [NT:alternate gene name: recM]


[SP:P24277] [LE:28865] [RE:29461] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_19960162_c1_232
2833
6605
2631
876
1785
5.2e−184










Description


pir: [LN:E69745] [AC:E69745] [PN:hypothetical protein ybcD] [GN:ybcD]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1182118:g2632452] [LN:BSUB0001]


[AC:Z99104:AL009126] [GN:ybcD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1 of 21):


from 1 to213080.] [LE:207166] [RE:209430] [DI:direct]


>gp: [GI:e1182136:g2632470] [LN:BSUB0002] [AC:Z99105:AL009126] [GN:ybcD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 2 of 21): from 194651 to415810.] [LE:12516]


[RE:14780] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_20093_c3_311
2834
6606
306
101










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_20314005_c3_335
2835
6607
4590
1529
4186
0.0










Description


sp: [LN:GLTB_BACSU] [AC:P39812] [GN:GLTB:GLTA] [OR:BACILLUS SUBTILIS]


[EC:1.4.1.13] [DE:GLUTAMATE SYNTHASE [NADPH] LARGE CHAIN, (NADPH-GOGAT)]


[SP:P39812] [DB:swissprot] >pir: [LN:G69634] [AC:G69634] [PN:glutamate


synthase (large subunit) gltA] [GN:gltA] [CL:glutamate synthase (NADPH)]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1183503:g2634228] [LN:BSUB0010]


[AC:Z99113:AL009126] [PN:glutamate synthase (large subunit)] [GN:gltA]


[FN:glutamate biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.4.1.13] [DE:Bacillus subtilis complete genome (section 10 of 21): from


1781201to 2014980.] [SP:P39812] [LE:228126] [RE:232688] [DI:complement]


>gp: [GI:e1185318:g2634239] [LN:BSUB0011] [AC:Z99114:AL009126] [PN:glutamate


synthase (large subunit)] [GN:gltA] [FN:glutamate biosynthesis] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:1.4.1.13] [DE:Bacillus subtilis complete


genome (section 11 of 21): from 2000171to 2207900.] [SP:P39812] [LE:9156]


[RE:13718] [DI: complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_203886_f2_137
2836
6608
159
52
116
2.8e−06










Description


gp: [GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst) ,enterotoxin (ent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_20602262_c2_303
2837
6609
543
180
105
0.00015










Description


sp: [LN:YHBS_ECOLI] [AC:P45473] [GN:YHBS] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 18.5 KD PROTEIN IN SOHA-MTR INTERGENIC REGION (F167)]


[SP:P45473] [DB:swissprot] >pir: [LN:H65105] [AC:H65105] [PN:hypothetical


protein b3156] [OR:Escherichia coli] [DB:pir2] >gp: [GI:g606096] [LN:ECOUW67]


[AC:U18997] [OR:Escherichia coli] [DB:genpept-bct1] [DE:Escherichia coli


K-12 chromosomal region from 67.4 to 76.0 minutes.] [NT:ORF_f167; end


overlaps end of o100 by 14 bases;] [LE:81007] [RE:81510] [DI:complement]


>gp: [GI:g1789546] [LN:AE000396] [AC:AE000396:U00096] [PN:orf, hypothetical


protein] [GN:yhbS] [FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 286 of 400 of the completegenome.]


[NT:f167; f167; end overlaps end of 0100 by 14] [LE:6918] [RE:7421]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_20602263_c2_270
2838
6610
1512
503
1414
1.1e−144










Description


sp: [LN:NDHF_BACSU] [AC:P39755] [GN:NDHF] [OR:BACILLUS SUBTILIS] [EC:1.6.5.3]


[DE:OXIDOREDUCTASE CHAIN 5)] [SP:P39755] [DB:swissprot] >pir: [LN:C69666]


[AC:C69666] [PN:NADH dehydrogenase (subunit 5) ndhF] [GN:ndhF]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1034042:g3599601] [LN:AB006424]


[AC:AB006424] [PN:NADH DEHYDROGENASE SUBUNIT 5] [GN:ndhF] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis genomic DNA, 70 kb region between 17 and 23degree.]


[LE:8378] [RE:9895] [DI:direct] >gp: [GI:g903587] [LN:BSU28323] [AC:U28323]


[PN:NADH dehydrogenase subunit 5] [GN:ndhF] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis NADH dehydrogenase subunit 5 (ndhF)


gene,complete cds.] [LE:519] [RE:2036] [DI:direct]


>gp: [GI:e1182116:g2632450] [LN:BSUB0001] [AC:Z99104:AL009126] [PN:NADH


dehydrogenase (subunit 5)] [GN:ndhF] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.6.5.3] [DE:Bacillus subtilis complete genome


(section 1 of 21): from 1 to213080.] [NT:alternate gene name: ybxE]


[SP:P39755] [LE:205395] [RE:206912] [DI:direct] >gp: [GI:e1182134:g2632468]


[LN:BSUB0002] [AC:Z99105:AL009126] [PN:NADH dehydrogenase (subunit 5)]


[GN:ndhF] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.6.5.3] [DE:Bacillus


subtilis complete genome (section 2 of 21): from 194651 to415810.]


[NT:alternate gene name: ybxE] [SP:P39755] [LE:10745] [RE:12262] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_2142316_f3_207
2839
6611
213
70
52
0.040










Description


gp: [GI:e1287275:g3063696] [LN:ATF4D11] [AC:AL022537] [PN:putative protein]


[GN:F4D11.60] [OR:Arabidopsis thaliana] [SR:thale cress] [DB:genpept-pln1]


[DE:Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAIIproject) .]


[NT:contains EST gb:W43721] [LE:21418:21729:22060] [RE:21537:22004:22174]


(DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_21516287_f1_2
2840
6612
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_2195338_c3_342
2841
6613
165
54










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_22305342_f3_205
2842
6614
543
180
162
8.7e−11










Description


gp: [GI:g4019275] [LN:AF083424] [AC:AF083424] [OR:Ateline herpesvirus 3]


[DB:genpept-vr1] [DE:Ateline herpesvirus 3 complete genome.] [NT:orf 48]


[LE:62159] [RE:64537] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_22437751_c3_307
2843
6615
489
162
160
5.5e−11










Description


pir: [LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp: [GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN:hypothetical protein] [OR:Rhodobacter capsulatus] [DB:genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_22459802_f2_135
2844
6616
156
51
117
1.0e−06










Description


gp: [GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, completecds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_22688428_c3_348
2845
6617
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_23484678_c2_304
2846
6618
1731
576
1263
1.1e−128










Description


pir: [LN:S13786] [AC:S13786:S00745:S66049:B69618] [PN:DNA-directed DNA


polymerase, III chain dnaX:DNA polymerase III (gamma and tau subunits) dnax]


[GN:dnaX:dnaZX] [OR:Bacillus subtilis] [EC:2.7.7.7] [DB:pir2]


>gp: [GI:dl005797:g467409] [LN:BAC180K] [AC:D26185] [PN:DNA polymerase III


subunit] [GN:dnaH] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:90414] [RE:92105]


[DI:direct] >gp: [GI:g580914] [LN:BSRECM] [AC:X17014] [GN:dnaZX] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis dnaZX and recR genes and


two unidentified readingframes.] [SP:P09122] [LE:261] [RE:1952] [DI:direct]


>gp: [GI:e1181952:g2632286] [LN:BSUB0001] [AC:Z99104:AL009126] [PN:DNA


polymerase III (gamma and tau subunits)] [GN:dnaX] [FN:DNA synthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.7.7.7] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to213080.] [NT:alternate gene


name: dnaH, dna-8132] [SP:P09122] [LE:26812] [RE:28503] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_23556500_f1_33
2847
6619
282
93










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_2359675_c3_329
2848
6620
141
46
68
0.047










Description


pir: [LN:S72295] [AC:S72295] [PN:ribosomal protein S8] [GN:rps8]


[OR:plastid Plasmodium falciparum] LDB:pir2] >gp: [GI:e220199:g1171601]


[LN:PFCOMPIRB] [AC:X95276] [GN:rps8] [OR:Plasmodium falciparum] [SR:malaria


parasite P. falciparum] [DB:genpept-inv1] [DE:P.falciparum complete gene map


of plastid-like DNA (IR-B) .] [LE:5492] [RE:5878] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_23631262_f2_94
2849
6621
150
49










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_23994687_f1_45
2850
6622
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_24016916_c3_341
2851
6623
1044
347
396
8.1e−37










Description


sp: [LN:YEIH_ECOLI] [AC:P33019] [GN:YEIH] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 36.9 KD PROTEIN IN LYSP-NFO INTERGENIC REGION] [SP:P33019]


[DB:swissprot] >pir: [LN:E64984] [AC:E64984] [PN:hypothetical 36.9 kD


protein in lysP-nfo intergenic region] [GN:yeiH] [OR:Escherichia coli]


[DB:pir2] >gp: [GI:g405879] [LN:ECOHU47] [AC:U00007] [PN:yeiH]


[OR:Escherichia coli] [SR:Escherichia coli K12 BHB2600] [DB:genpept-bct1]


[DE:47 to 48 centisome region of E.coli K12 BHB2600.] [LE:57462] [RE:58511]


[DI:direct] >gp: [GI:g1788482] [LN:AE000305] [AC:AE000305:U00096] [PN:orf,


hypothetical protein] [GN:yeiH] [FN:orf; Unknown] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 195 of 400 of the


completegenome.] [NT:o349; 100 pct identical to YEIH_ECOLI SW: P33019]


[LE:2831] [RE:3880] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24220967_c1_228
2852
6624
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24227192_c3_343
2853
6625
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24235626_c1_257
2854
6626
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_24272337_f3_204
2855
6627
432
143
96
0.0025










Description


pir: [LN:D69633] [AC:D69633] [PN:glutamine ABC transporter


(glutamine-binding protein) ginH] [GN:glnH]


[CL:lysine-arginine-ornithine-binding protein] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1183973:g2635189] [LN:BSUB0014] [AC:Z99117:AL009126]


[PN:glutamine ABC transporter (glutamine-binding] [GN:glnH] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21) from 2599451to 2812870.] [LE:202928] [RE:203749] [DI:direct]


>gp: [GI:e1183991:g2635207] [LN:BSUB0015] [AC:Z99118:AL009126] [PN:glutamine


ABC transporter (glutamine-binding] [GN:glnH] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 15 of 21):


from 2795131to 3013540.] [LE:7248] [RE:8069] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_24350953_f1_6
2856
6628
132
43
72
0.017










Description


pir: [LN:G71244] [AC:G71244] [PN:hypothetical protein PH0217] [GN:PH0217]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp: [GI:d1030229:g3256603]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:106aa long hypothetical protein] [GN:PH0217] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7) .] [LE:191072]


[RE:191392] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24390937_f3_198
2857
6629
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24391885_f3_178
2858
6630
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_24475252_f3_213
2859
6631
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_24664802_c1_234
2860
6632
747
248
380
4.0e−35










Description


pir: [LN:H70027] [AC:H70027] [PN:carboxylesterase homolog yvaK] [GN:yvaK]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1186050:g2635875] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvaK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551to 3609060.] [NT:similar to carboxylesterase] [LE:53733]


[RE: 54479] [DI: complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_25422288_c2_277
2861
6633
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_25442803_c2_306
2862
6634
261
86










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_25586693_c3_346
2863
6635
333
110
374
1.7e−34










Description


sp: [LN:YAAK_BACSU] [AC:P24281] [GN:YAAK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 11.8 KD PROTEIN IN DNAZ-RECR INTERGENIC REGION] [SP:P24281]


[DB:swissprot] >pir: [LN:S13787] [AC:S13787:S66050:C69737] [PN:conserved


hypothetical protein yaaK] [GN:yaaK] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:d1005798:g467410] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:92129] [RE:92452] [DI:direct] >gp: [GI:g40073] [LN:BSRECM]


[AC:X17014] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


dnaZX and recR genes and two unidentified readingframes.] [NT:ORF107]


[SP:P24281] [LE:1976] [RE:2299] [DI:direct] >gp: [GI:e1181953:g2632287]


[LN:BSUB0001] [AC:Z99104:AL009126] [GN:yaaK] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 1


of 21): from 1 t0213080.] [NT:similar to hypothetical proteins] [SP:P24281]


[LE:28527] [RE:28850] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_256468_c2_294
2864
6636
330
109










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_26460887_f1_34
2865
6637
1524
507
366
6.4e−32










Description


sp: [LN:TAGE_BACSU] [AC:P13484] [GN:TAGE:RODD:GTAA] [OR:BACILLUS SUBTILIS]


[EC:2.4.1.52] [DE:(EC 2.4.1.52) (TEICHOIC ACID BIOSYNTHESIS PROTEIN E)]


[SP:P13484] [DB:swissprot] >pir: [LN:506048] [AC:506048:F69720]


[PN:poly(glycerol-phosphate) alpha-glucosyltransferase, tagE:probable rodD


protein:UDP-glucose- -polyglycerol phosphate glucosyltransferase tagE]


[GN:tagE:rodD] [OR:Bacillus subtilis] [EC: 2.4.1.52] [DB:pir2] [MP:310


degrees] >gp: [GI:g580920] [LN:BSRODC] [AC:X15200] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis rodC operon.] [NT:rodD (gtaA)


polypeptide (AA 1–673)] [SP:P13484] [LE:157] [RE:2178] [DI:direct]


>gp: [GI:e1184479:g2636099] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:UDP-glucose:polyglycerol phosphate] [GN:tagE] [FN:teichoic acid


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.4.1.52]


[DE:Bacillus subtilis complete genome (section 19 of 21): from 3597091to


3809700.] [NT:alternate gene name: rodD, gtaA, gtaD] [SP:P13484] [LE:80369]


[RE:82390] [DI:complement] >gp: [GI:e1184479:g2636099] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:UDP-glucose:polyglycerol phosphate] [GN:tagE]


[FN:teichoic acid biosynthesis] [OR:Bacillus subtilis] [DB:genpept]


(EC:2.4.1.52] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:alternate gene name: rodD, gtaA, gtaD] [SP:P13484]


[LE:80369] [RE:82390] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_26776562_c3_317
2866
6638
399
132










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_2769816_f3_206
2867
6639
135
44
135
2.5e−08










Description


gp: [GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst) ,enterotoxin Cent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_30265952_c2_291
2868
6640
387
128
118
2.3e−07










Description


pir: [LN:H69029] [AC:H69029] [PN:mutator MutT related protein] [GN:MTH122]


[CL:mutT domain homology] [OR:Methanobacterium thermoautotrophicum]


[DB:pir2] >gp: [GI:g2621161] [LN:AE000801] [AC:AE000801:AE000666] [PN:mutator


MutT related protein] [GN:MTH122] [OR:Methanobacterium thermoautotrophicum]


[DB:genpept-bct1] [DE:Methanobacterium thermoautotrophicum from bases 68653


to 79584 (section 7 of 148) of the complete genome.] [NT:Function Code:10.09 -


Metabolism of Macromolecules,] [LE:9193] [RE:9660] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_30682802_c3_321
2869
6641
261
86










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_33399055_c2_273
2870
6642
393
130
419
3.0e−39










Description


pir: [LN:H69745] [AC:H69745] [PN:hypothetical protein ybcI] [GN:ybcI]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1034047:g3599606] [LN:AB006424]


[AC:AB006424] [GN:ybcI] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic DNA, 70 kb


region between 17 and 23degree.] [LE:13549] [RE:13923] [DI:direct]


>gp: [GI:e1182121:g2632455] [LN:BSUB0001] [AC:Z99104:AL009126] [GN:ybcI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 1 of 21): from 1 to213080.] [LE:210558] [RE:210932]


[DI:direct] >gp: [GI:e1182139:g2632473] [LN:BSUB0002] [AC:Z99105:AL009126]


[GN:ybcI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 2 of 21): from 194651 to415810.]


[LE:15908] [RE:16282] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_33756432_f1_7
2871
6643
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_34407625_c3_309
2872
6644
354
117
587
4.7e−57










Description


gp: [GI:g1658281] [LN:SLU74623] [AC:U74623] [PN:CadX] [FN:cadmium resistance]


[OR:Staphylococcus lugdunensis] [DB:genpept-bct1] [DE:Staphylococcus


lugdunensis strain 995 cadmium resistance plasmidpLUG10, complete sequence.]


[LE:2624] [RE:2971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_34557262_c3_349
2873
6645
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_35431657_f2_114
2874
6646
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_36227142_c1_240
2875
6647
993
330
409
3.4e−38










Description


sp: [LN:LYTE_BACSU] [AC:P54421] [GN:LYTE:PAPQ] [OR:BACILLUS SUBTILIS]


[DE:PAPQ PRECURSOR) (CELL WALL-ASSOCIATED POLYPEPTIDE CWBP33)] [SP:P54421]


[DB:swissprot] >gp: [GI:g1488662] [LN:BSU38819] [AC:U38819]


[PN:phosphatase-associated protein] [GN: lytE] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis phosphatase-associated protein


(lytE) gene,complete cds.] [NT:Muralytic when cloned in E.coli; Iap60


homolog;] [LE:443] [RE:1447] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_36568828_c2_266
2876
6648
1050
349
984
4.0e−99










Description


pir: [LN:A43577] [AC:A43577] [PN:regulatory protein pfoR] [OR:Clostridium


perfringens] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_36593802_c2_282
2877
6649
867
288
454
5.8e−43










Description


sp: [LN:PLPA_PASHA] [AC:Q08868:Q07363] [GN:PLPA] [OR:PASTEURELLA HABMOLYTICA]


[DE:OUTER MEMBRANE LIPOPROTEIN 1 PRECURSOR (PLP1)] [SP:Q08868:Q07363]


[DB:swissprot] >pir: [LN:JN0751] [AC:JN0751] [PN:Outer membrane 30K


protein:ORF1] [CL:lipoprotein-28] [OR:Pasteurella haemolytica] [DB:pir2]


>gp: [GI:g349530] [LN:PASLIPOPR] [AC:L11037] [PN:lipoprotein] [OR:Pasteurella


haemolytica] [SR:Pasteurella haemolytica (strain A1) DNA] [DB:genpept-bct1]


[DE:Pasteurella haemolytica lipoprotein gene, complete cds.] [NT:precursor]


[LE:171] [RE:1004] [DI:direct] >gp: [GI:g150508] [LN:PASLIPOPRO] [AC:M91072]


[PN:lipoprotein] [OR:Pasteurella haemolytica] [SR:Pasteurella haemolytica


(strain A1) (library: pUCl9 of R. Craven e] [DB:genpept-bct1]


[DE:Pasteurella haemolytica (clones pGEB2830,pBRES2830) lipoproteingene,


complete cds.] [LE:136] [RE:969] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_3944143_c3_308
2878
6650
627
208
971
9.5e−98










Description


gp: [GI:g1916729] [LN:AF134905] [AC:AF134905:U76550] [PN:CadD] [GN:cadD]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pRW001 CadD (cadD) gene, completecds.] [NT:confers low level cadmium


resistance] [LE:2328] [RE:2957] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_3945253_f3_203
2879
6651
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_3954385_f1_32
2880
6652
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4064818_c1_239
2881
6653
675
224
533
2.5e−51










Description


sp: [LN:YAEE_ECOLI] [AC:P31547] [GN:YAEE] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YAEE] [SP:P31547]


[DB:swissprot] >pir: [LN:F64744] [AC:F64744] [PN:probable transport protein


yaeE] [GN:yaeE] [CL:probable transport protein yaeE] [OR:Escherichia coli]


[DB:pir2] >gp: [GI:d1041643:g4902941] [LN:ECOTSF] [AC:D83536]


[PN:Hypothetical 23.3 kd protein in rcsF-abc] [GN:yaeE] [OR:Escherichia


coli] [SR:Escherichia coli (strain:K12) DNA] [DB:genpept-bct1]


[DE:Escherichia coli genomic DNA. (4.1–6.1 min) .] [NT:ORF_ID:o124#1;


similar to SwissProt Accession] [LE:30521] [RE:31174] [DI:complement]


>gp: [GI:g1552774] [LN:ECU70214] [AC:U70214] [GN:yaeE] [OR:Escherichia coli]


[DB:genpept-bct1] [DE:Escherichia coli chromosome minutes 4–6.]


[NT:hypothetical] [LE:52043] [RE:52696] [DI:complement] >gp: [GI:g1786397]


[LN:AE000129] [AC:AE000129:U00096] [PN:putative transport system permease


protein] [GN:yaeE] [FN:putative transport; Not classified] [OR:Escherichia


coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 19 of 400


of the completegenome.] [NT:f218; 100 pct identical to YAEE_ECOLI SW:


P31547] [LE:944] [RE:1597] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4082828_c3_320
2882
6654
702
233
211
3.3e−17










Description


pir: [LN:F71886] [AC:F71886] [PN:hypothetical protein jhp0787] [GN:jhp0787]


[OR:Helicobacter pylori] [SR:strain J99, , strain J99] [SR:strain J99,]


[DB:pir2] >gp: [GI:g4155367] [LN:AE001509] [AC:AE001509:AE001439]


[PN:putative] [GN:jhp0787] [OR:Helicobacter pylori J99] [DB:genpept-bct2]


[DE:Helicobacter pylori, strain J99 section 70 of 132 of the


completegenome.] [NT:similar to H. pylori 26695 gene HP0851] [LE:2708]


[RE:3394] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_4101525_f1_60
2883
6655
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4328468_c2_298
2884
6656
1473
490
1279
2.2e−130










Description


pir: [LN:H69634] [AC:H69634] [PN:glutamate synthase (small subunit) gltB]


[GN:gltB] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1183502:g2634227]


[LN:BSUB0010] [AC:Z99113:AL009126] [PN:glutamate synthase (small subunit)]


[GN:gltB] [FN:glutamate biosynthesis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:1.4.1.13] [DE:Bacillus subtilis complete genome


(section 10 of 21): from 1781201to 2014980.] [LE:226628] [RE:228109]


[DI:complement] >gp: [GI:e1185317:g2634238] [LN:BSUB0011]


[AC:Z99114:AL009126] [PN:glutamate synthase (small subunit)] [GN:gltB]


[FN:glutamate biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.4.1.13] [DE:Bacillus subtilis complete genome (section 11 of 21): from


2000171to 2207900.] [LE:7658] [RE:9139] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_4335766_c1_261
2885
6657
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4344011_f3_152
2886
6658
252
83
60
0.023










Description


gp: [GI:d1036760:g4062561] [LN:D90737] [AC:D90737:AB001340]


[PN:4-hydroxyphenylacetate 3-monooxygenase (EC] [GN nmoB] [OR:Escherichia


coli] [SR:Escherichia coli(strain:K12) DNA, clone:Kohara clone #227]


[DB:genpept-bct1] [DE:Escherichia coli genomic DNA. (22.8–23.1 min) .]


[NT:ORF_ID:o228#5; similar to PIR Accession Number] [LE:15357] [RE:15932]


[DI:complement] >gp: [GI:d1036770:g4062570] [LN:D90738] [AC:D90738:AB001340]


[PN:4-hydroxyphenylacetate 3-monooxygenase (EC] [GN:nmoB] [OR:Escherichia


coli] [SR:Escherichia coli(strain:K12) DNA, clone:Kohara clone #228]


[DB:genpept-bct1] [DE:Escherichia coli genomic DNA. (23.0–23.4 min) .]


[NT:ORF_ID:o228#5; similar to PIR Accession Number] [LE:3821] [RE:4396]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_4485682_f3_159
2887
6659
264
87










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4580132_f1_72
2888
6660
171
56
161
3.6e−11










Description


gp: [GI:g2689564] [LN:U93688] [AC:U93688] [PN:integrase] [GN:int]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus toxic


shock syndrome toxin-1 (tst),enterotoxin (ent), and integrase (int) genes,


complete cds.] [NT:similar to staphylococcal phage integrase] [LE:13871]


[RE:15091] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_4703167_f1_44
2889
6661
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_4703512_c3_315
2890
6662
486
161
335
2.4e−30










Description


pir: [LN:A70068] [AC:A70068 ] [PN:conserved hypothetical protein ywqN]


[GN:ywqN] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1184521:g2636140]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywqN] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21): from 3597091to 3809700.] [NT:similar to hypothetical proteins]


[LE:124753] [RE:125298] [DI:complement] >gp: [GI:e308071:g1894752]


[LN:BSZ92952] [AC:Z92952] [PN:unknown] [GN:ywqN] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes.]


[LE:13028] [RE:13573] [DI:direct] >gp: [GI:e1184521:g2636140] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywqN] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091to 3809700.] [NT:similar to hypothetical proteins] [LE:124753]


[RE:125298] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_47343_c1_219
2891
6663
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_5265643_f1_30
2892
6664
1122
373










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_5343760_f2_129
2893
6665
267
88










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_5860927_f2_138
2894
6666
189
62
75
0.023










Description


gp: [GI:e1283542:g4455153] [LN:ATF6I18] [AC:ALO22198] [PN:putative protein]


[GN:F6I18.10] [OR:Arabidopsis thaliana] [SR:thale cress] [DB:genpept-pln1]


[DE:Arabidopsis thaliana DNA chromosome 4, BAC clone F6118 (ESSAIIproject) .]


[NT:contains EST gb:T22575, T22317] [LE:>199:404:631] [RE:347:548:921]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_6052175_f1_65
2895
6667
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_6053437_c3_310
2896
6668
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_6251262_f3_146
2897
6669
189
62
75
0.0084










Description


gp: [GI:d1044717:g5105618] [LN:AP000062] [AC:AP000062] [PN:121aa long


hypothetical protein] [GN:APE1925] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 5/7.] [NT:similar to OWL:AB00947213 percent identity:62.500]


[LE:233017] [RE:233382] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_657678_f3_208
2898
6670
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_6698526_c2_264
2899
6671
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_6743788_c2_272
2900
6672
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_6760887_f3_174
2901
6673
924
307
333
3.8e−30










Description


sp: [LN:GLTC_BACSU] [AC:P20668] [GN:GLTC] [OR:BACILLUS SUBTILIS]


[DE:TRANSCRIPTIONAL REGULATORY PROTEIN GLTC] [SP:P20668] [DB:swissprot]


>pir: [LN:A69635] [AC:A69635:A33951:A61642] [PN:transcription activator of


glutamate synthase operon gltC:regulatory protein gltC] [GN:gltC]


[CL:probable transcription regulator lsyR] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:e1183504:g2634229] [LN:BSUB0010] [AC:Z99113:AL009126]


[PN:transcriptional regulator (LysR family)] [GN:gltC] [FN:positive


regulation of the glutamate synthase] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201to 2014980.] [SP:P20668] [LE:232835] [RE:233737] [DI:direct]


>gp: [GI:e1185319:g2634240] [LN:BSUB0011] [AC:Z99114:AL009126]


[PN:transcriptional regulator (LysR family)] [GN:gltC] [FN:positive


regulation of the glutamate synthase] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171to 2207900.] [SP:P20668] [LE:13865] [RE:14767] [DI:direct]


>gp: [GI:g457514] [LN:M28509] [AC:M28509] [GN:gltC] [FN:positive


transcriptional regulator] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis (gltC) gene, complete cds and glutamate synthase,large


subunit (gltA) gene, partial cds. gene.] [LE:34] [RE:936] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_6832950_c1_218
2902
6674
189
62










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000998_956312_f2_139
2903
6675
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000998_984703_c2_281
2904
6676
1026
341
763
1.0e−75










Description


sp: [LN:ABC_ECOLI] [AC:P30750:P77517] [GN:ABC] [OR:ESCHERICHIA COLI]


[DE:ATP-BINDING PROTEIN ABC] [SP:P30750:P77517] [DB:swissprot]


>pir: [LN:G64744] [AC:G64744:141113] [PN:probable ABC-type transport protein


abc] [GN:abc] [CL:unassigned ATP-binding cassette proteins: ATP-binding


cassette homology] [OR:Escherichia coli] [DB:pir2] >gp: [GI:g1552775]


[LN:ECU70214] [AC:U70214] [PN:ATP-binding protein] [GN:abc] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:Escherichia coli chromosome minutes 4–6.]


[LE:52689] [RE:53720] [DI:complement] >gp: [GI:g1786398] [LN:AE000129]


[AC:AE000129:U00096] [PN:ATP-binding component of a transporter] [GN:abc]


[FN:transport; Not classified] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 19 of 400 of the completegenome.]


[NT:f343; 98 pct identical to fragment (231] [LE:1590] [RE:2621]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10191427_c1_745
2905
6677
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10320337_c3_1119
2906
6678
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10359688_f3_633
2907
6679
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10546925_c3_1155
2908
6680
978
325
1246
6.8e−127










Description


sp: [LN:DNAA_STAAU] [AC:P49994] [GN:DNAA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA] [SP:P49994]


[DB:swissprot] >pir: [LN:JC5607] [AC:JC5607] [PN:replication initiation


protein dnaA] [GN:dnaA] [CL:replication initiation protein dnaA]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:d1014451:g1694677] [LN:D89066]


[AC:D89066] [PN:DnaA] [GN:dnaA] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


DNA for DnaA, complete cds.] [LE:456] [RE:1817] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10556300_f2_428
2909
6681
174
57










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10556712_c3_1187
2910
6682
990
329
1667
1.7e−171










Description


gp: [GI:g1408063] [LN:STAMECRA] [AC:L14017] [PN:methicillin-resistance


protein] [GN:mecR] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


methicillin-resistance protein (mecR) geneand unknown ORF, complete cds.]


[NT:putative] [LE:125] [RE:1111] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10582782_f3_549
2911
6683
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_10629385_f1_185
2912
6684
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10634800_c1_819
2913
6685
966
321
143
2.4e−07










Description


pir: [LN:D69900] [AC:D69900] [PN:conserved hypothetical protein yobV]


[GN:yobV] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:g2619048] [LN:AF027868]


[AC:AF027868] [PN:transcription regulator] [GN:yobV] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis chromosome region between terC and


odhAB.] [NT:similar to Mycobacterium tuberculosis hypothetical] [LE:63061]


[RE:64002] [DI:complement] >gp: [GI:e1185382:g2634303] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yobV] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] ]DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171to 2207900.] [NT:similar to hypothetical proteins] [LE:82152]


[RE:83 093] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_1071002_f3_616
2914
6686
411
136
71
0.026










Description


gp: [G1:g142964] [LN:BACGERD] [AC:M27259] [OR:Bacillus subtilis]


[SR:B.subtilis (strain 168) DNA, clone lambda-EMBL-3-2H] [DB:genpept-bct1]


[DE:B.subtilis gerD gene, complete cds.] [NT:unknown ORF] [LE:<1] [RE:282]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10727217_f1_212
2915
6687
270
89
212
2.5e−17










Description


pir: [LN:B69770] [AC:B69770] [PN:conserved hypothetical protein ydaS]


[GN:ydaS] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1020027:g1881247]


[LN:AB001488] [AC:AB001488] [GN:ydaS] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence, 148 kb sequence of the regionbetween 35 and 47 degree.]


[NT:FUNCTION UNKNOWN.] [LE:25711] [RE:25968] [DI:complement]


>gp: [GI:e1182403:g2632737] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydaS]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 to611850.] [NT:similar to


hypothetical proteins from B. subtilis] [LE:89455] [RE:89712]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10928_c2_1083
2916
6688
1242
413
240
8.2e−18










Description


pir: [LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp: [GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN: hypothetical protein] [OR:Rhodobacter capsulatus] [DB genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_10928_f1_226
2917
6689
1017
338
175
1.3e−10










Description


pir: [LN:T03492] [AC:T03492] [PN:hypothetical protein] [OR:Rhodobacter


capsulatus] [DB:pir2] [MP:1] >gp: [GI:g3128293] [LN:AF010496] [AC:AF010496]


[PN:hypothetical protein] [OR:Rhodobacter capsulatus] [DB:genpept-bct2]


[DE:Rhodobacter capsulatus strain SB1003, partial genome.] [LE:54291]


[RE:55613] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_111500_c3_1239
2918
6690
546
181
101
1.9e−05










Description


gp: [GI:g940735] [LN:LMIAP1270] [AC:X85869] [PN:invasive associated protein]


[GN:iap] [OR:Listeria monocytogenes] [DB:genpept-bct1] [DE:L.monocytogenes


type 1 partial iap gene (strain 12705/89) .] [NT:invades nonprofessional


phagocytic cells] [LE:<1] [RE:>260] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_111592_c2_931
2919
6691
243
80
83
0.0083










Description


gp: [GI:e1349691:g3880163] [LN:CET24A11] [AC:Z49072] [GN:T24A11.2]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid T24A11, complete sequence.] [LE:22751:23187:23506]


[RE:23145:23464:23646] [DI:complementJoin]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_115627_f2_344
2920
6692
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_1205000_f1_183
2921
6693
555
184
314
4.0e−28










Description


pir: [LN:F69768] [AC:F69768] [PN:acetyltransferase homolog ydaF] [GN:ydaF]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1020012:g1881232] [LN:AB001488]


[AC:AB001488] [GN:ydaF] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the regionbetween 35 and 47 degree.] [NT:PROBABLE


ACETYLTRANSFERASE.] [LE:6233] [RE:6784] [DI:direct]


>gp: [GI:e1182387:g2632721] [LN:BSUB0003] [AC:Z99106:AL00912G] [GN:ydaF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21): from 402751 toG11850.] [NT:similar to


acetyltransferase] [LE:69977] [RE:70528] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_12536337_f2_405
2922
6694
327
108










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_12588250_c1_671
2923
6695
198
65










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_1259387_f2_250
2924
6696
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_1261078_f1_223
2925
6697
579
192
471
9.1e−45










Description


sp: [LN:XPT_BACSU] [AC:P42085] [GN:XPT] [OR:BACILLUS SUBTILIS] [EC:2.4.2.—]


[DE:XANTHINE PHOSPHORIBOSYLTRANSFERASE,] [SP:P42085] [DB:swissprot]


>pir: [LN:S51309] [AC:S51309:E69734] [PN:xanthine phosphoribosyltransferase


xpt] [GN:xpt] [OR:Bacillus subtilis] [DB:pir2] >gp: p8 GI:g1256617]


[LN:BACYACA] [AC:L77246] [PN:adenine phosphoribosyltransferase] [GN:xpt]


[FN:purine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.4.2.7] [DE:Bacillus subtilis (YAC10-9 clone) DNA region between the


serA andkdg loci.] [NT:27% identity with E.coli adenine] [LE:1426] [RE:2010]


[DI:direct] >gp: [GI:e1183653:g2634626] [LN:BSUB0012] [AC:Z99115:AL009126]


[PN:xanthine phosphoribosyltransferase] [GN:xpt] [FN:purine biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:2.4.2.7] [DE:Bacillus subtilis


complete genome (section 12 of 21): from 2195541to 2409220.] [SP:P42085]


[LE:123142] [RE:123726] [DI:complement] >gp: [GI:g633169] [LN:BSXPTPBUX]


[AC:X83878] [PN:xanthine phosphoribosyltransferase] [GN:xpt] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B.subtilis xpt and pbuX genes.] [SP:P42085]


[LE:357] [RE:941] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_1301_f3_471
2926
6698
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_13089052_f1_2
2927
6699
123
40










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_134677_f2_417
2928
6700
1101
366
1373
2.4e−140










Description


sp: [LN:YYAF_BACSU] [AC:P37518] [GN:YYAF] [OR:BACILLUS SUBTILIS] [DE:REGION]


[SP:P37518] [DB:swissprot] >pir: [LN:S66016] [AC:S66016:E70084] [PN:probable


GTP-binding protein yyaF] [GN:yyaF] [CL:yeast probable purine


nucleotide-binding protein YBRO25c] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:d1005764:g467376] [LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:47839] [RE:48939] [DI:complement] >gp: [GI:e1184818:g2636639]


[LN:BSUB0021] [AC:Z99124:AL009126] [GN:yyaF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


21 of 21): from 3999281to 4214814.] [NT:similar to hypothetical proteins]


[SP:P37518] [LE:199771] [RE:200871] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_13704191_c1_811
2929
6701
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_13750258_f1_41
2930
6702
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_1379132_c1_806
2931
6703
564
187
589
2.9e−57










Description


gp: [GI:d1045999:g5360823] [LN:D86934] [AC:D86934] [PN:IS150-like


transposase] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N028; putative]


[LE:<20180] [RE:20578] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_13828575_f1_31
2932
6704
444
147
617
3.1e−60










Description


sp: [LN:ARSC_STAAU] [AC:P30330] [GN:ARSC] [OR:STAPHYLOCOCCUS AUREUS]


[DE:ARSENATE REDUCTASE (ARSENICAL PUMP MODIFIER)] [SP:P30330] [DB:swissprot]


>pir:[LN:D41903] [AC:D41903] [PN:arsenate reductase,] [GN:arsC]


[CL:protein-tyrosine-phosphatase, low molecular weight] [OR:Staphylococcus


aureus] [EC:1.—.—.—] [DB:pir1] >gp:[GI:g150729] [LN:PI2ARSRBC] [AC:M86824]


[PN:arsenate reductase] [GN:arsC] [FN:Reduction of arsenate to arsenite]


[OR:Plasmid p1258] [SR:Plasmid p1258 DNA] [DB:genpept-bct1] [DE:Plasmid


p1258 arsenic resistance operon (arsRBC) genes, completecds.] [LE:1894]


[RE:2289] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_1384628_f2_290
2933
6705
1278
425
251
4.3e−19










Description


pir: [LN:H64514] [AC:H64514] [PN:hypothetical protein MJECL41]


[OR:Methanococcus jannaschii] [DB:pir2] [MP:ECLREV53908-52610]


>gp:[GI:g1522674] [LN:MII2CG] [AC:L77118] [PN:M. jannaschii predicted coding


region MJECL41] [GN:MJECL41] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii large extra-chromosomal element,


completesequence.] [NT:identified by GeneMark; putative] [LE:52610]


[RE:53908] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_13864680_c2_1056
2934
6706
384
127
247
5.0e−21










Description


sp: [LN:YQCJ_BACSU] [AC:P45949] [GN:YQCJ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 12.3 KD PROTEIN IN CWLA-CISA INTERGENIC REGION] [SP:P45949]


[DB:swissprot] >pir: [LN:H69949] [AC:H69949] [PN:transcription regulator


ArsR family homolog yqcJ] [GN:yqcJ] [CL:arsenical resistance operon


repressor] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1013110:g1303775]


[LN:BACJH642] [AC:D84432:D82370] [PN:YqcJ] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheAl) ) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:61977] [RE:62294] [DI:direct] >gp: [GI:d1007542:g1217882] [LN:BACSKIN]


[AC:D32216] [PN:ORF3] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642 (trpC2 pheA1) ) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 48


kb region including a skin element which islocated between spoIVCB and


spoIIIC.] [NT:similarity to arsenical resistance operon] [LE:43732]


[RE:44049] [DI:direct] >gp: [GI:e1183810:g2635026] [LN:BSUB0014]


[AC:Z99117:AL009126] [GN:yqcJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 14 of 21):


from 2599451to 2812870.] [NT:similar to transcriptional regulator (ArsR


family)] [SP:P45949] [LE:57136] [RE:57453] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_13912551_c1_827
2935
6707
1695
564
156
6.7e−08










Description


gp: [GI:g4530172] [LN:AF085222] [AC:AF085222] [PN:putative primase]


[OR:Streptococcus thermophilus bacteriophage DT1] [DB:genpept-phg]


[DE:Streptococcus thermophilus bacteriophage DT1, complete genome.]


[NT:Orf3G] [LE:28549] [RE:30063] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14111687_f3_529
2936
6708
225
74
104
3.3e−05










Description


sp: [LN:Y4IQ_RHISN] [AC:P55500] [GN:Y4IQ,Y4ND,Y4SD] [OR:RHIZOBIUM SP]


[SR:NGR234,] [DE:PUTATIVE INSERTION SEQUENCE ATP-BINDING PROTEIN


Y4IQ/Y4ND/Y4SD] [SP:P55500] [DB:swissprot] >gp: [GI:g2182455] [LN:AE000079]


[AC:AE000079:U00090] [PN:Y4iQ]][GN:y4iQ] [OR:Rhizobium sp. NGR234]


[DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid pNGR234a, section 16 of


46 of thecomplete plasmid sequence.] [NT:putative insertion sequence


ATP-binding protein;] [LE:1883] [RE:2779] [DI:complement] >gp: [GI:g2182539]


[LN:AE000086] [AC:AE000086:U00090] [PN:Y4nD] [GN:y4nD] [OR:Rhizobium sp.


NGR234] [DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid pNGR234a, section


23 of 46 of thecomplete plasmid sequence.] [NT:putative insertion sequence


ATP-binding protein;] [LE:8640] [RE:9536] [DI:complement] >gp: [GI:g2182618]


[LN:AE000095] [AC:AE000095:U00090] [PN:Y4sD] [GN:y4sD] [OR:Rhizobium sp.


NGR234] [DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid pNGR234a, section


32 of 46 of thecomplete plasmid sequence.] [NT:putative insertion sequence


ATP-binding protein;] [LE:7675] [RE:8571] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14220027_f3_618
2937
6709
1143
380
190
3.0e−12










Description


gp: [GI:d1025733:g2879913] [LN:D85752] [AC:D85752] [GN:bacG] [OR:Enterococcus


faecalis] [SR:Enterococcus faecalis plasmid:pPD1 DNA] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pPD1 bacA, bacB, bacC, bacD, bacE,bacF,


bacG, bacH and bad genes, complete cds.] [LE:5832] [RE:7055] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14460882_c3_1296
2938
6710
342
114
484
3.8e−46










Description


gp: [GI:g1022726] [LN:5HU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain = Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, completecds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14532058_c3_1228
2939
6711
273
90
452
9.4e−43










Description


sp: [LN:TRA1_STAAU] [AC:P14506] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE ELEMENT IS257 IN TRANSPOSON TN4003] [SP:P14506]


[DB:swissprot] >pir: [LN:504l62] [AC:S04162] [PN:transposase 1]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g46748] [LN:SATN4003]


[AC:X13290] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus multi-resistance plasmid pSK1 DNA containingtransposon Tn4003.]


[NT:transposase (AA 1–224)] [SP:P14506] [LE:89] [RE:763] [DI:complement]


>gp: [GI:g46753] [LN:SATN4003] [AC:X13290] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus multi-resistance plasmid pSK1


DNA containingtransposon Tn4003.] [NT:transposase (AA 1–224)] [SP:P14506]


[LE:4017] [RE:4691] [DI:complement] >gp: [GI:g1762092] [LN:5EU40381]


[AC:U40381] [PN:transposase] [GN:tnp] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK697 insertion


sequenceIS257(697A) putative transposase gene, complete cds.] [NT:Tnp;


putative transposase] [LE:57] [RE:731] [DI:direct] >gp: [GI:g1762098]


[LN:SEU40384] [AC:U40384] [PN:transposase] [GN:tnp] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK818


insertion sequenceIS257(818A) putative transposase gene, complete cds.]


[NT:Tnp; putative transposase] [LE:57] [RE:731] [DI:direct]


>gp: [GI:g3676405] [LN:AF051916] [AC:AF051916] [PN:putative transposase TnpC]


[GN:tnpC] [OR:Staphylococcus aureus] [DB genpept-bct2] [DE:Staphylococcus


aureus plasmid pJE1 remnant of replication proteinRep (rep), trimethoprim


resistance protein DfrA (dfrA), thymidylatesynthetase ThyE (thyE), and


putative transposase Tnp (tnp) genes,complete cds; and unknown gene.]


[LE:65] [RE:739] [DI:direct] >gp: [GI:g3676411] [LN:AF051916] [AC:AF051916]


[PN:putative transposase TnpE] [GN:tnpE] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pJE1 remnant of


replication proteinRep (rep), trimethoprim resistance protein DfrA (dfrA),


thymidylatesynthetase ThyE (thyE), and putative transposase Tnp (tnp)


genes,complete cds; and unknown gene.] [LE:4409] [RE:5083] [DI:direct]


>gp: [GI:g3676433] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


transposase TnpC] [GN:tnpC] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41. complete sequence.] LE:22981]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_14578382_f1_27
2940
6712
192
63










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_14625031_f3_489
2941
6713
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14719827_c3_1275
2942
6714
330
109
85
0.0070










Description


gp: [GI:g4049891] [LN:AF063866] [AC:AF063866] [PN:ORF MSV019 hypothetical


protein] [GN:MSV019] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vr1] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:21761] [RE:23074] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_14728382_f1_210
2943
6715
300
99
336
1.8e−30










Description


sp: [LN:RSG_BACSU] [AC:P21468] [GN:RPSF] [OR:BACILLUS SUBTILIS] [DE:30S


RIBOSOMAL PROTEIN SG (BS9)] [SP:P21468] [DB:swissprot] >pir: [LN:S66015]


[AC:S66015:S11356:E69699] [PN:ribosomal protein S6 (BS9) rpsF:ribosomal


protein BS9] [GN:rpsF] [CL:Escherichia coli ribosomal protein S6]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:d1005763:g467375] [LN:BAC180K]


[AC:D26185] [PN:ribosomal protein 56] [GN:rpsF] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (sub species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:47441] [RE:47728] [DI:complement] >gp: [GI:e1184817:g2636638]


[LN:BSUB0021] [AC:Z99124:AL009126] [PN:ribosomal protein SG (BS9)] [GN:rpsF]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 21 of 21): from 3999281to 4214814.] [SP:P21468] [LE:199373]


[RE:199660] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_14881552_f1_187
2944
6716
216
71










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_15033181_c3_1093
2945
6717
444
147
90
0.0071










Description


gp: [GI:g4176374] [LN:AC004953] [AC:AC004953] [GN:WUGSC:H_DJ1059M17.2]


[OR:Homo sapiens] [SR:INFORMATION] [DB:genpept-pri3] [DE:Homo sapiens PAC


clone DJ1059M17 from 7q21–q31.1, completesequence.] [NT:myosin regulatory


light chain 2; similar to S22715] [LE:67137:67324:69882]


[RE:67235:67372:69960] [DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_15052318_f2_391
2946
6718
1395
464
1606
4.9e−165










Description


sp: [LN:THDF_BACSU] [AC:P25811] [GN:THDF] [OR:BACILLUS SUBTILIS] [DE:POSSIBLE


THIOPHENE AND FURAN OXIDATION PROTEIN THDF] [SP:P25811] [DB:swissprot]


>pir: [LN:JQ1215] [AC:140439:S66026:C69722:JQ1215:S18075] [PN:thiophen /


furan oxidation protein thdF:50K protein homolog] [GN:thdF] [CL:thiophen /


furan oxidation protein:translation elongation factor Tu homology]


[OR:Bacillus subtilis] DB:pir2] >gp: [GI:d1005774:g467386] [LN:BAC180K]


[AC:D26185] [PN:thiophen and furan oxidation] [GN:tdhF] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:59506] [RE:60885] [DI:complement] >gp: [GI:g40025] [LN:BSORIGS]


[AC:X62539] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B.subtilis genes


rpmH, rnpA, 50kd, gidA and gidB.] [NT:homologous to E.coli 50K] [SP:P25811]


[LE:2515] [RE:3894] [DI:direct] >gp: [GI:e1184828:g2636649] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:thdF] [FN:thiophen and furan oxidation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 21 of 21): from 3999281to 4214814.] [SP:P25811] [LE:211438]


[RE:212817] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_15055313_c3_1183
2947
6719
444
147
753
1.2e−74










Description


gp: [GI:d1046028:g5360852] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF CN038] [LE:45523] [RE:>45966] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_15632952_c1_833
2948
6720
489
162










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_157500_c1_771
2949
6721
729
242
253
1.2e−21










Description


sp: [LN:YD31_HELPY] [AC:O25889] [GN:HP1331] [OR:HELICOBACTER PYLORI]


[SR:,CANPYLOBACTER PYLORI] [DE:HYPOTHETICAL PROTEIN HP1331] [SP:025889]


[DB:swissprot] >pir: [LN:C64686] [AC:C64686] [PN:conserved hypothetical


integral membrane protein HP1331] [CL:hypothetical protein b2682]


[OR:Helicobacter pylori] [DB:pir2] >gp: [GI:g2314496] [LN:AE000634]


[AC:AE000634:AE000511] [PN:conserved hypothetical integral membrane]


[GN:HP1331] [OR:Helicobacter pylori 26695] [DB:genpept-bct2]


[DE:Helicobacter pylori 26695 section 112 of 134 of the completegenome.]


[NT:similar to GB:L42023 SP:P44302 PID:1008819] [LE:10600] [RE:11286]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_15752213_f1_167
2950
6722
270
89
74
0.034










Description


gp: [GI:g2645365] [LN:SHU83823] [AC:U83823] [PN:NADH dehydrogenase subunit 4]


[GN:ND4] [OR:Mitochondrion Sigmodon hispidus] [SR:Sigmodon hispidus]


[DB:genpept-rod] [DE:Sigmodon hispidus NADH dehydrogenase subunit 3 (ND3)


and NADHdehydrogenase subunit 4L (ND4L) genes, complete cds,


NADHdehydrogenase subunit 4 (ND4) gene, partial cds, and tRNA-Arg


gene,complete sequence, mitochondrial genes encoding mitochondrialproducts.]


[LE:709] [RE:>1332] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_15788276_f3_494
2951
6723
198
65
56
0.028










Description


gp: [GI:g452394] [LN:BMFLC3] [AC:Z26886] [PN:Nd-sD mutant fibroin light


chain] [OR:Bombyx mori] [SR:domestic silkworm] [DB:genpept-inv1] [DE:B.mori


gene for Nd-sD mutant fibroin light chain.] [LE:<1:1275:1732]


[RE:125:1447:2074] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_15893843_f2_246
2952
6724
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_161661_f3_507
2953
6725
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_16222092_f1_44
2954
6726
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_162812_c2_1058
2955
6727
147
48










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_16432963_c1_709
2956
6728
1116
371
972
7.4e−98










Description


pir: [LN:A69847] [AC:A69847] [PN:cystathionine gamma-synthase homolog yjcI]


[GN:yjcI] [CL:O-succinylhomoserine (thiol)-lyase] [OR:Bacillus subtilis]


[DB:pir2] >gp: [GI:e1l83207:g2633541] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjcI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21): from 1194391to 1411140.]


[NT:similar to cystathionine gamma-synthase] [LE:63573] [RE:64694]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_16601512_c1_834
2957
6729
510
169
98
0.0027










Description


gp: [GI:e1346924:g3877219] [LN:CEF4GF3] [AC:Z81085] [GN:F46F3.3]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid F46F3, complete sequence.] [LE:12629:13473:14592:14734]


[RE:12740:13771:14687:14877] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_16688_c2_1062
2958
6730
216
71
95
6.4e−05










Description


gp: [GI:g5230679] [LN:AF036485] [AC:AF036485:AF036486:AF036487:U93364]


[PN:hypothetical protein] [OR:Plasmid pNZ4000] [DB:genpept] [DE:Plasmid


pNZ4000, complete sequence.] [NT:Orf-100] [LE:42675:1] [RE:42810:167]


[DI:complementJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_16695311_f2_259
2959
6731
693
230
1184
2.5e−120










Description


sp: [LN:TRA2_STAAU] [AC:P19380] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE-LIKE ELEMENT IS431MEC] [SP:P19380] [DB:swissprot]


>pir: [LN:512093] [AC:S12093:JU0116] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g46602] [LN:SAIS431M]


[AC:X53818:M18438] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.


aureus IS431mec gene associated with methicillin resistance.] [NT:putative


transposase (AA 1–224)] [SP:P19380] [LE:272] [RE:946] [DI:direct]


>gp: [GI:e1237900:g2791991] [LN:SANECAR1I] [AC:Y14051] [PN:putative


transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus mecA, mecR1, med genes and ORF168, ORF142,ORF44, ORF145 and ORF224.]


[NT:ORF224] [LE:8096] [RE:8770] [DI:direct] >gp: [GI:d1046034:g5360858]


[LN:D86934] [AC:D86934] [PN:transposase for insertion sequence-like element]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N062] [LE:48054] [RE:48728]


[DI:direct] >gp: [GI:dl046044:g5360868] [LN:D86934] [AC:D86934]


[PN:transposase for insertion sequence-like element] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of


N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N070] [LE:53400] [RE:54074] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_16695311_f2_282
2960
6732
693
230
1191
4.6e−121










Description


sp: [LN:TRA2_STAAU] [AC:P19380] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE-LIKE ELEMENT IS431MEC] [SP:P19380] [DB:swissprot]


>pir: [LN:512093] [AC:S12093:JU0116] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g46602] [LN:SAIS431M]


[AC:X53818:M18438] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.


aureus IS431mec gene associated with methicillin resistance.] [NT:putative


transposase (AA 1–224)] [SP:P19380] [LE:272] [RE:946] [DI:direct]


>gp: [GI:e1237900:g2791991] [LN:SANECAR1I] [AC:Y14051] [PN:putative


transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus mecA, mecR1, mecI genes and ORF168, ORF142,ORF44, ORF145 and ORF224.]


[NT:ORF224] [LE:8096] [RE:8770] [DI:direct] >gp: [GI:d1046034:g5360858]


[LN:D86934] [AC:D86934] [PN:transposase for insertion sequence-like element]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N062] [LE:48054] [RE:48728]


[DI:direct] >gp: [GI:d1046044:g5360868] [LN:D86934] [AC:D86934]


[PN:transposase for insertion sequence-like element] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of


N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N070] [LE:53400] [RE:54074] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_16975082_c1_860
2961
6733
306
101










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_17004551_f1_11
2962
6734
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_193812_c1_810
2963
6735
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_19531308_c1_778
2964
6736
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_19548192_c3_1120
2965
6737
765
254
68
0.00074










Description


pir: [LN:S44477] [AC:S44477:558747] [PN:NADH dehydrogenase (ubiquinone),


chain 4L] [GN:ND4L] [CL:NADH dehydrogenase (ubiquinone) chain 4L]


[OR:mitochondrion Hansenula wingei] [EC:1.6.5.3] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_1960300_f1_181
2966
6738
201
66










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_19613436_f2_338
2967
6739
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_19647213_c3_1213
2968
6740
342
113
157
1.7e−11










Description


pir: [LN:C69774] [AC:C69774] [PN:transcription regulator phage-related


homolog ydcN] [GN:ydcN] [OR:Bacillus subtilis] [DB:pir2]


>gp: [GI:d1020073:g1881293] [LN:AB001488] [AC:AB001488] [GN:ydcN]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the regionbetween 35 and 47 degree.] [NT:PROBABLE REPRESSOR PROTEIN.]


[LE:64366] [RE:64749] [DI:complement] >gp: [GI:e1182448:g2632782]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydcN] [FN:unknown][[OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21): from 402751 to611850.] [NT:similar to transcriptional regulator]


[LE:128111] [RE:128494] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_19719812_c1_877
2969
6741
474
157
803
6.0e−80










Description


sp: [LN:TRA1_STAAU] [AC:P14506] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE ELEMENT IS257 IN TRANSPOSON TN4003] [SP:P14506]


[DB:swissprot] >pir: [LN:S04162] [AC:504162] [PN:transposase 1]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g46748] [LN:SATN4003]


[AC:X13290] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus multi-resistance plasmid pSK1 DNA containingtransposon Tn4003.]


[NT:transposase (AA 1–224)] [SP:P14506] [LE:89] [RE:763] [DI:complement]


>gp: [GI:g46753] [LN:SATN4003] [AC:X13290] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus multi-resistance plasmid pSK1


DNA containingtransposon Tn4003.] [NT:transposase (AA 1–224)] [SP:P14506]


[LE:4017] [RE:4691] [DI:complement] >gp: [GI:g1762092] [LN:SEU40381]


[AC:U40381] [PN:transposase] [GN:tnp] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK697 insertion


sequenceIS257(697A) putative transposase gene, complete cds.] [NT:Tnp;


putative transposase] [LE:57] [RE:731] [DI:direct] >gp: [GI:g1762098]


[LN:SEU40384] [AC:U40384] [PN:transposase] [GN:tnp] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK818


insertion sequenceIS257(818A) putative transposase gene, complete cds.]


[NT:Tnp; putative transposase] [LE:57] [RE:731] [DI:direct]


>gp:[GI:g3676405] [LN:AF051916] [AC:AF051916] [PN:putative transposase TnpC]


[GN:tnpC] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pJE1 remnant of replication proteinRep (rep), trimethoprim


resistance protein DfrA (dfrA), thymidylatesynthetase ThyE (thyE), and


putative transposase Tnp (tnp) genes,complete cds; and unknown gene.]


[LE:65] [RE:739] [DI:direct] >gp: [GI:g3676411] [LN:AF051916] [AC:AF051916]


[PN:putative transposase TnpE] [GN:tnpE] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pJE1 remnant of


replication proteinRep (rep), trimethoprim resistance protein DfrA (dfrA),


thymidylatesynthetase ThyE (thyE), and putative transposase Tnp (tnp)


genes,complete cds; and unknown gene.] [LE:4409] [RE:5083] [DI:direct]


>gp: [GI:g3676433] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


transposase TnpC] [GN:tnpC] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:22981]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_19720462_f2_314
2970
6742
1203
400
370
4.6e−34










Description


sp: [LN:YJIJ_ECOLI] [AC:P39381] [GN:YJIJ] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 41.4 KD PROTEIN IN IADA-MCRD INTERGENIC REGION (F392)]


[SP:P39381] [DB:swissprot] >pir: [LN:S56557] [AC:556557:F65247]


[PN:hypothetical 41.4K protein (iadA-mcrD intergenic region):hypothetical


protein f392] [GN:yjiJ] [OR:Escherichia coli] [DB:pir2] >gp: [GI:g537173]


[LN:ECOUW93] [AC:U14003] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes.]


[NT:ORF_f392] [LE:252329] [RE:253507] [DI:complement] >gp: [GI:g1790788]


[LN:AE000503] [AC:AE000503:U00096] [PN:putative transport protein] [GN:yjiJ]


[FN:putative transport; Not classified] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 393 of 400 of the


completegenome.] [NT:f392; 100 pct identical amino acid sequence and]


[LE:10037] [RE:11215] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_19767150_c3_1177
2971
6743
567
188
746
6.6e−74










Description


gp: [GI:d1046049:g5360873] [LN:D86934] [AC:D86934] [PN:orfX]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF CN051] [LE:56338] [RE:>56817]


[DI:complement] >gp: [GI:d1046058:g5391439] [LN:AB014440] [AC:AB014440]


[PN:orfX] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:NCTC8325) DNA] [DB:genpept] [DE:Staphylococcus aureus genes for


orf1, orfX, orf2, orf3, partial andcomplete cds.] [NT:integration site of


mecDNA was predicted to locate] [LE:1396] [RE:1875] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_19803150_f2_421
2972
6744
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_20194532_c1_732
2973
6745
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20329376_f1_94
2974
6746
174
57
57
0.013










Description


pir: [LN:D70158] [AC:D70158] [PN:lipoprotein signal peptidase,] [OR:Borrelia


burgdorferi] [SR:, Lyme disease spirochete] [EC:3.4.23.36] [DB:pir2]


>gp: [GI:g2688373] [LN:AE001151] [AC:AE001151:AE000783] [PN:signal peptidase


II (1sp)] [GN:BB0469] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi (section 37 of 70) of the


complete genome.] [NT:similar to GB:X78084 PID:459545 SP:Q59835 percent]


[LE:10907] [RE:11419] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_20359682_f1_169
2975
6747
168
55










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20517318_f1_193
2976
6748
1200
399
1171
6.1e−119










Description


gp: [GI:e281310:g1667356] [LN:CTZ82038] [AC:Z82038] [PN:acetyl coenzyme A


acetyltransferase (thiolase)] [GN:thlA] [OR:Thermoanaerobacterium


thermosaccharolyticum] [DB:genpept-bct1] [EC:2.3.1.9]


[DE:C.thermosaccharolyticum etfB, etfA, hbd, thlA and actA genes.] [LE:2642]


[RE:3820] [DI:direct] >gp: [GI:e308220:g1903332] [LN:TTBCSOPRN] [AC:Z92974]


[PN:acetyl coenzyme A acetyltransferase (thiolase)] [GN:thl]


[OR:Thermoanaerobacterium thermosaccharolyticum] [DB genpept-bct1]


[EC:2.3.1.9] [DE:T.thermosaccharolyticum BCS operon DNA.] [LE:4835]


[RE:6013] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20523253_c3_1227
2977
6749
252
83
447
3.2e−42










Description


sp: [LN:TRA1_STAAU] [AC:P14506] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE ELEMENT IS257 IN TRANSPOSON TN4003] [SP:P14506]


[DB:swissprot] >pir: [LN:S04162] [AC:504162] [PN:transposase 1]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g46748] [LN:SATN4003]


[AC:X13290] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus multi-resistance plasmid pSK1 DNA containingtransposon Tn4003.]


[NT:transposase (AA 1–224)] [SP:P14506] [LE:89] [RE:763] [DI:complement]


>gp: [GI:g46753] [LN:SATN4003] [AC:X13290] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus multi-resistance plasmid pSK1


DNA containingtransposon Tn4003.] [NT:transposase (AA 1–224)] [SP:P14506]


[LE:4017] [RE:4691] [DI:complement] >gp: [GI:g1762092] [LN:SEU40381]


[AC:U40381] [PN:transposase] [GN:tnp] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK697 insertion


sequenceIS257(697A) putative transposase gene, complete cds.] [NT:Tnp;


putative transposase] [LE:57] [RE:731] [DI:direct] >gp: [GI:g1762098]


[LN:5EU40384] [AC:U40384] [PN:transposase] [GN:tnp] [OR:Staphylococcus


epidermidis] [DB:genpept-bct1] [DE:Staphyloccous epidermidis plasmid pSK818


insertion sequenceIS257(818A) putative transposase gene, complete cds.]


[NT:Tnp; putative transposase] [LE:57] [RE:731] [DI:direct]


>gp: [GI:g3676405] [LN:AF051916] [AC:AF051916] [PN:putative transposase TnpC]


[GN:tnpC] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pJE1 remnant of replication proteinRep (rep), trimethoprim


resistance protein DfrA (dfrA), thymidylatesynthetase ThyE (thyE), and


putative transposase Tnp (tnp) genes,complete cds; and unknown gene.]


[LE:65] [RE:739] [DI:direct] >gp: [GI:g3676411] [LN:AF051916] [AC:AF051916]


[PN:putative transposase TnpE] [GN:tnpE] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pJE1 remnant of


replication proteinRep (rep), trimethoprim resistance protein DfrA (dfrA),


thymidylatesynthetase ThyE (thyE), and putative transposase Tnp (tnp)


genes,complete cds; and unknown gene.] [LE:4409] [RE:5083] [DI:direct]


>gp: [GI:g3676433] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


transposase TnpC] [GN:tnpC] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:22981]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20585963_c3_1206
2978
6750
348
115
478
1.7e−45










Description


gp: [GI:d1045998:g5360822] [LN:D86934] [AC:D86934] [PN:IS150-like


transposase] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N311 [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N027; putative]


[LE:19826] [RE:20179] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20585963_c3_1283
2979
6751
906
301
647
2.0e−63










Description


gp: [GI:g929972] [LN:BAU30714] [AC:U30714] [OR:Bacillus anthracis]


[SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis Weybridge A toxin


plasmid pXO1 right invertedrepeat element (WeyAR) bordering the


toxin-encoding region, ORFAand ORFB genes, complete cds.] [NT:ORFB; similar


to B. anthracis SterneL element ORFB;] [LE:512] [RE:1336] [DI:direct]


>gp: [GI:g929975] [LN:BAU30715] [AC:U30715] [OR:Bacillus anthracis]


[SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis Sterne toxin


plasmid pXO1 left inverted repeatelement (SterneL) bordering the


toxin-encoding region, ORFB andtruncated ORFA genes, complete cds.]


[NT:ORFB; similar to B. anthracis WeyAR element ORFB;] [LE:458] [RE:1282]


[DI:direct] >gp: [GI:g4894312] [LN:AF065404] [AC:AF065404] [PN:pXO1–96]


[OR:Bacillus anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence


plasmid PXO1, complete sequence.] [LE:116307] [RE:117131] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_20964212_c3_1232
2980
6752
1692
563
652
6.0e−64










Description


gp: [GI:d1046002:g5360826] [LN:D86934] [AC:D86934] [PN:site-specific


recombinase] [GN:ccrB] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N037; cassette


chromosome recombinase B] [LE:25508] [RE:27136] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_2116643_f3_472
2981
6753
189
62
47
0.0062










Description


sp: [LN:TYB4_MOUSE] [AC:P20065] [GN:TMSB4:PTMB4] [OR:MUS MUSCULUS]


[SR:,MOUSE] [DE:THYMOSIN BETA-4] [SP:P20065] [DB:swissprot] >pir: [LN:A37217]


[AC:A37217:508074:512884] [PN:thymosin beta-4] [CL:thymosin beta] [OR:Mus


musculus] [SR:, house mouse] [DB:pir2] >gpKGI:g54794] [LN:MMTHYB4]


[AC:X16053:M38039:M54991] [OR:Mus musculus] [SR:house mouse]


[DB:genpept-rod] [DE:Mouse mRNA for thymosin beta-4.] [NT:thymosin beta-4a


(AA 1–50)] [SP:P20065] [LE:140] [RE:292] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_2120265_c3_1214
2982
6754
870
289
151
6.1e−08










Description


pir: [LN:S76167] [AC:S76167] [PN:hypothetical protein] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp: [GI:d1019159:g1653513] [LN:D90914] [AC:D90914:AB001339] [PN:hypothetical


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 16/27,


1991550–2137258.] [NT:ORF_ID:slr0959] [LE:37283] [RE:38872] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_2128400_f1_188
2983
6755
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_2148468_f2_400
2984
6756
2073
690
1718
6.6e−177










Description


gp: [GI:g3789932] [LN:AF090142] [AC:AF090142] [PN:lipase precursor] [GN:gehD]


[OR:Staphylococcus epidermidis] [DB:genpept-bct2] [EC:3.1.1.3]


[DE:Staphylococcus epidermidis lipase precursor (gehD) gene, completecds.]


[NT:GehD] [LE:293] [RE:2224] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_21506575_c1_702
2985
6757
897
298
331
6.2e−30










Description


pir: [LN:JC5911] [AC:JC5911] [PN:lysin] [GN:lys] [OR:Lactobacillus phage


phi-gle] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_21521878_c1_795
2986
6758
354
117
181
1.2e−12










Description


pir: [LN:F64114] [AC:F64114] [PN:type I site-specific deoxyribonuclease,


chain hsdR] [GN:hsdR] [CL:DEAD/H box helicase homology] [OR:Haemophilus


influenzae] [EC:3.1.21.3] [DB:pir2] >gp: [GI:g1574743] [LN:U32808]


[AC:U32808:L42023] [PN:type I restriction enzyme (hsdR)] [GN:H11285]


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 123 of 163 of the completegenome.] [NT:similar to PID:1685100


percent identity: 59.01;] [LE:5702] [RE:8869] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_21532937_f2_349
2987
6759
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_21644175_c3_1179
2988
6760
273
90
439
2.2e−41










Description


gp: [GI:d1046045:g5360869] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF CN049] [LE:54106] [RE:>54378] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_21660805_f1_145
2989
6761
1017
338
867
9.9e−87










Description


gp: [GI:g3044072] [LN:AF055713] [AC:AF055713] [PN:beta-hemolysin] [GN:hlb]


[OR:Staphylococcus schleiferi] [DB:genpept-bct2] [DE:Staphylococcus


schleiferi beta-hemolysin (hib) gene, partial cds.] [LE:1] [RE:>987]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_21736277_f2_365
2990
6762
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_22078331_f2_355
2991
6763
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_2209675_f1_61
2992
6764
1470
489
465
3.9e−44










Description


sp: [LN:TYD2_PETCR] [AC:Q06086] [GN:TYRDC-2] [OR:PETROSELINtJM CRISPUM]


[SR:,PARSLEY:PETROSELINUM HORTENSE] [EC:4.1.1.25] [DE:TYROSINE DECARBOXYLASE


2,] [SP:Q06086] [DB:swissprot] >pir: [LN:A44405] [AC:A44405] [PN:tyrosine


decarboxylase,] [GN:tyrCD] [CL:aromatic-L-amino-acid decarboxylase:animal


histidine decarboxylase homology] [OR:Petroselinum crispum] [SR:, parsley]


[EC:4.1.1.25] [DB:pir2] >gp: [GI:g169671] [LN:PUMTRYDC2X] [AC:M96070]


[PN:tyrosine decarboxylase] [GN:TryDC-2] [OR:Petroselinum crispum]


[SR:Petroselinum crispum (library: lambda gt11) cDNA to mRNA]


[DB:genpept-pln1] [EC:4.1.1.25] [DE:Parsley tyrosine decarboxylase (TryDC-2)


mRNA, complete cds.] [LE:4] [RE:1548] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_2214217_c2_984
2993
6765
1845
614
2888
6.9e−301










Description


gp: [GI:g5114231] [LN:AF136709] [AC:AF136709] [PN:histidine kinase YycG]


[GN:yycG] [OR:Staphylococcus aureus] [DB:genpept] [DE:Staphylococcus aureus


response regulator YycF (yycF) and histidinekinase YycG (yycG) genes,


complete cds.] [LE:1363] [RE:3189] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_22275082_f2_264
2994
6766
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_22291327_c2_908
2995
6767
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_22383437_f2_293
2996
6768
321
106
80
0.0091










Description


pir: [LN:529577] [AC:151043:529577] [PN:Ig light chain] [GN:IgL]


[OR:Oncorhynchus mykiss] [SR:, rainbow trout] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_22475037_c3_1209
2997
6769
126
41
114
2.3e−06










Description


gp: [GI:g2605928] [LN:AF029727] [AC:AF029727] [OR:Enterococcus faecium]


[DB:genpept-bct2] [DE:Enterococcus faecium insertion sequence IS1485,


complete sequence.] [NT:putative; orfB] [LE:402] [RE:1238] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_22537563_c1_840
2998
6770
231
76










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_22679825_f1_84
2999
6771
168
55
111
7.6e−06










Description


pir: [LN:B69978] [AC:B69978] [PN:2-nitropropane dioxygenase homolog yrpB]


[GN:yrpB] [OR:Bacillus subtilis] [DB:pir2] >gp:g1934639] [LN:BSU93875]


[AC:U93875] [PN:2-nitropropane dioxygenase] [GN:yrpB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis alcohol dehydrogenase (adhB) gene,


partial cds,hypothetical spore coat protein (yraF), hypothetical spore


coatprotein (yraG), YraH (yraH), YraI (yraI), YraJ (yraJ), YraK (yraK) ,YraL


(yraL), chitosanase precursor (csn), YraM (yraM), LysR-familytranscription


regulator (yraN), YraO (yraO), YrpG (yrpG), RNApolymerase sigma factor SigZ


(sigZ), YrpE (yrpE), YrpD (yrpD), YrpC(yrpC) and 2-nitropropane dioxygenase


(yrpB) genes, complete cds,and aminoglycoside 6-adenylyltransferase (aadK)


gene, partial cds.] [NT:similar to 2-nitropropane dioxigenase of Williopsis]


[LE:16473] [RE:17516] [DI:complement] >gp: [GI:e1183909:g2635125]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrpB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451to 2812870.] [NT:similar to 2-nitropropane


dioxygenase] [LE:136734] [RE:137777] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_22900337_c2_906
3000
6772
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_22902302_c1_767
3001
6773
1407
468
2010
7.5e−208










Description


sp: [LN:SYS_STAAU] [AC:P95689] [GN:SERS] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.1.1.11] [DE:SERYL-TRNA SYNTHETASE, (SERINE--TRNA LIGASE) (SERRS)]


[SP:P95689] [DB:swissprot] >gp: [GI:e291101:g1835218] [LN:SASERS] [AC:Y09924]


[PN:seryl-trna synthetase] [GN:serS] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [EC:6.1.1.11] [DE:S.aureus serS gene.] [SP:P95689] [LE:1]


[RE:1287] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23437803_f3_452
3002
6774
714
237
129
7.7e−07










Description


gp: [GI:g4981720] [LN:AE001774] [AC:AE001774:AE000512] [PN:transcriptional


regulator, crp family] [GN:TM1171] [OR:Thermotoga maritima]


[DB:genpept-bct2] [DE:Thermotoga maritima section 86 of 136 of the complete


genome.] [NT:similar to GB:Z26044 SP:P47200 PID:398391 percent] [LE:5164]


[RE:5769] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23438301_f1_87
3003
6775
255
84










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23438876_f3_528
3004
6776
258
85










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23439193_c3_1263
3005
6777
495
164
453
7.4e−43










Description


pir: [LN:G69784] [AC:G69784] [PN:hypothetical protein ydhK] [GN:ydhK]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1182558:g2632892] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:ydhK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to813890.] [LE:23509] [RE:24126] [DI:direct]


>gp: [GI:d1020482:g1945095] [LN:D88802] [AC:D88802] [GN:ydhK] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub species:Marburg, strain:168,


isolate:JH642] [DB:genpept-bct1] [DE:Bacillus subtilis DNA for


phoB-rrnE-groESL region, complete cds.] [NT:membrane protein] [LE:10511]


[RE:11128] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_2345025_c2_913
3006
6778
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23462762_c3_1097
3007
6779
1527
508
2298
2.3e−238










Description


sp: [LN:AHPF_STAAU] [AC:O05204] [GN:AHPF] [OR:STAPHYLOCOCCUS AUREUS]


[EC:1.6.4.—] [DE:ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F,] [SP:O05204]


[DB:swissprot] >gp: [GI:g1916317] [LN:SAU92441] [AC:U92441:X85029] [PN:alkyl


hydroperoxide reductase subunit F] [GN:ahpF] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus alkyl hydroperoxide reductase


subunit C(aphC) and subunit F (aphF) genes, complete cds.] [NT:AhpF]


[LE:1376] [RE:2899] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23468762_f3_521
3008
6780
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23507_c1_765
3009
6781
2709
902
3998
0.0










Description


gp: [GI:d1001842:g540542] [LN:STAGYRABA] [AC:D10489] [PN:DNA gyrase A]


[GN:gyrA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:ATCC12600) DNA].  [DB:genpept-bct1] [EC:5.99.1.3] [DE:Staphylococcus


aureus genes for DNA gyrase A and B, complete cds.] [LE:2152] [RE:4815]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23537785_f2_233
3010
6782
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23538427_c2_887
3011
6783
309
102
132
8.3e−09










Description


pir: [N:F71456] [AC:F71456] [PN:hypothetical protein PH0308] [GN:PH0308]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp: [GI:d1030324:g3256698]


[LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:215aa long hypothetical protein] [GN:PH0308] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1–287000 nt. position (1/7).]


[NT:motif = prokaryotic membrane lipoprotein lipid] [LE:271764] [RE:272411]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23556577_f1_99
3012
6784
324
107










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23563500_c1_706
3013
6785
156
51










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_235678_f2_239
3014
6786
216
71
203
2.3e−16










Description


pir: [LN:F69903] [AC:F69903] [PN:D-alanyl-D-alanine carboxypeptidase homolog


yodJ] [GN:yodJ] [OR:Bacillus subtilis] [DB:pir2] >gp: [GI:g2415396]


[LN:AF015775] [AC:AF015775] [PN:carboxypeptidase] [GN:yodJ] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis YodA (yodA), YodB (yodB),


YodC (yodC), YodD(yodD), ABC-transporter (yodE), permease (yodF), proteinase


(ctpA) ,YodH (yodH), YodI (yodI), carboxypeptidase (yodJ), purinenucleoside


phosphorylase (deoD), YodL (yodL), YodM (yodM), YodN(yodN), YodO (yodO),


YodP (yodP), acetylornitine deacetylase(argE), butirate-acetoacetate CoA


transferase (yodR), butyrateacetoacetate-CoA transferase (yodS), YodT


(yodT), CgeE (cgeE), CgeD(cgeD), CgeC (cgeC), CgeA (cgeA), CgeB (cgeB), YzxA


(yzxA),UDP-glucose epimerase (yodU), YodV (yodV), and YodW (yodW)


genes,complete cds; and YodZ (yodZ) gene, partial cds.] [NT:similar to


Enterococcus faecium D-alanil-D-alanine] [LE:8510] [RE:9331] [DI:complement]


>gp: [GI:e1185433:g2634354] [LN:BSUB0011] [AC:Z99114:AL009126] [GN:yodJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 11 of 21): from 2000171to 2207900.] [NT:similar to


D-alanyl-D-alanine carboxypeptidase] [LE:133640] [RE:134461] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23610885_c1_820
3015
6787
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23610952_c2_1082
3016
6788
855
284
305
3.6e−27










Description


pir: [LN:H69468] [AC:H69468] [PN:lysophospholipase homolog]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp: [GI:g2648798] [LN:AE000982]


[AC:AE000982:AE000782] [PN:lysophospholipase] [GN:AF1753] [OR:Archaeoglobus


fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 125 of 172 of


the complete genome.] [NT:similar to GP:1763011 percent identity: 33.46;]


[LE:10776] [RE:11576] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23612907_c1_696
3017
6789
144
47










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23631512_c3_1178
3018
6790
1323
440
2289
2.0e−237










Description


gp: [GI:d1046046:g5360870] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF CN050] [LE:54760] [RE:>56082] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23632883_c1_844
3019
6791
183
60










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23634682_c2_1013
3020
6792
375
124










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23634786_f3_619
3021
6793
1200
399
692
3.5e−68










Description


gp: [GI:d1025735:g2879915] [LN:D85752] [AC:D85752] [GN:bacI] [OR:Enterococcus


faecalis] [SR:Enterococcus faecalis plasmid:pPD1 DNA] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pPD1 bacA, bacB, bacC, bacD, bacE,bacF,


bacG, bacH and bad genes, complete cds.] [LE:7732] [RE:8931] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23635302_c1_867
3022
6794
138
45










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23635931_c1_854
3023
6795
375
124
637
2.3e−62










Description


sp: [LN:MERT_STAAU] [AC:P08656] [GN:MERT] [OR:STAPHYLOCOCCUS AUREUS]


[DE:MERCURIC TRANSPORT PROTEIN (MERCURY ION TRANSPORT PROTEIN)] [SP:P08656]


[DB:swissprot] >pir: [LN:D29504] [AC:D29504] [PN:hypothetical 14K protein


(mer operon)] [OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:g459906]


[LN:L29436] [AC:L29436:M15048:N00048] [GN:mert] [OR:Plasmid p1258]


[SR:Plasmid p1258 DNA] [DB:genpept-bct1] [DE:Plasmid p1258 (from S.aureus


strain RN23 8325) mercury resistance(mer) operon encoding mercuric reductase


(merA), organomercuriallyase (merB), regulatory protein (merR) and membrane


transportprotein (merT), complete cds.] [LE:2704] [RE:3090] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23679765_f3_449
3024
6796
1269
422
1274
7.4e−130










Description


gp: [GI:e1299582:g3687416] [LN:BLY17554] [AC:Y17554] [PN:arginine deiminase]


[GN:arcA] [OR:Bacillus licheniformis] [DB:genpept-bct1] [EC:3.5.3.G]


[DE:Bacillus licheniformis arcA, arcB, arcC and arcD genes.] [LE:248]


[RE:1489] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23703175_c3_1103
3025
6797
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23704502_f1_158
3026
6798
267
88










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23834461_f3_588
3027
6799
162
53










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_23860812_f2_403
3028
6800
603
200
540
4.5e−52










Description


gp: [GI:g4l85302] [LN:AF089862] [AC:AF089862] [PN:type-I signal peptidase


SipB] [GN:sipB] [OR:Staphylococcus carnosus] [DB:genpept-bct2]


[DE:Staphylococcus carnosus type-I signal peptidase SipA (sipA) andtype-I


signal peptidase SipB (sipB) genes, complete cds; andunknown gene.]


[NT:leader peptidase] [LE:1502] [RE:2071] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23866566_c2_1067
3029
6801
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23959802_c1_787
3030
6802
171
56










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23959802_c3_1250
3031
6803
153
50










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23959802_c3_1261
3032
6804
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23959802_f2_313
3033
6805
210
69










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_23959802_f3_447
3034
6806
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24016062_f1_168
3035
6807
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24023300_c2_964
3036
6808
516
171
760
2.2e−75










Description


sp: [LN:DNAA_STAAU] [AC:P49994] [GN:DNAA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA] [SP:P49994]


[DB:swissprot] >pir: [LN:JC5607] [AC:JC5607] [PN:replication initiation


protein dnaA] [GN:dnaA] [CL:replication initiation protein dnaA]


[OR:Staphylococcus aureus] [DB:pir2] >gp: [GI:d1014451:g1694677] [LN:D89066]


[AC:D89066] [PN:DnaA] [GN:dnaA] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus DNA] [DB genpept-bct1] [DE:Staphylococcus aureus


DNA for DnaA, complete cds.] [LE:456] [RE:1817] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24101587_f3_455
3037
6809
339
112
79
0.0098










Description


pir: [LN:542040] [AC:542040] [PN:hypothetical protein 3] [OR:Leuconostoc


oenos] [DB:pir2] >gp: [GI:g515739] [LN:LEUORF15X] [AC:L28806] [FN:unknown]


[OR:Oenococcus oeni] [DB:genpept-bct1] [DE:Leuconostoc oenos complete


ORF1–ORF5.] [NT:ORF3; putative] [LE:2571] [RE:2975] [DI:direct]


>gp: [GI:g454968] [LN:LOPLORFG] [AC:Z29976] [OR:Oenococcus oeni]


[DB:genpept-bct1] [DE:L.oenos plasmid p4028 ORF1, ORF2, ORF3, ORF4, ORF5


genes.] [NT:ORF3] [LE:2571] [RE:2975] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24110635_c3_1231
3038
6810
132
43










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24220062_c3_1104
3039
6811
285
94
68
0.045










Description


gp: [GI:g4731269] [LN:AF110706] [AC:AF110706] [PN:cytochrome oxidase I]


[OR:Mitochoridrion Bemisia tabaci] [SR:sweet potato whitefly]


[DB:genpept-inv2] [DE:Bemisia tabaci cytochrome oxidase I gene, partial


cds;mitochondrial gene for mitochondrial product.] [NT:premature stop


codon.] [LE:<1] [RE:330] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24234562_c2_890
3040
6812
222
73
64
0.026










Description


gp: [GI:g4808591] [LN:AF093829] [AC:AF093829]


[PN:alpha-1,2-fucosyltransferase long form] [OR:Helicobacter pylori]


[DB:genpept-bct2] [DE:Helicobacter pylori strain UA1182


alpha-1,2-fucosyltransferasegene, alternative products, complete cds.]


[NT:ribosomal slippage] [LE:141:573] [RE:573:1042] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24250010_c3_1271
3041
6813
225
74










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24255312_f1_128
3042
6814
159
52










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24256437_c1_717
3043
6815
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24273442_f1_22
3044
6816
384
127
144
4.1e−10










Description


pir: [LN:C70043] [AC:C70043] [PN:hypothetical protein yvlA] [GN:yvlA]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1186201:g2636026] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvlA] [FN:unknown] OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551to 3609060.] [LE:207957] [RE:208283] [DI:complement]


>gp: [GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [LE:10417]


[RE:10743] [DI:complement] >gp: [GI:g2618844] [LN:AF017113] [AC:AF017113]


[PN:YvlA] [GN:yvlA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis 300–304 degree genomic sequence.] [LE:19550] [RE:19876] [DI:direct]


>gp: [GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [LE:10417]


[RE:10743] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24273442_f1_85
3045
6817
384
127
142
6.7e−10










Description


pir: [LN:C70043] [AC:C70043] [PN:hypothetical protein yvlA] [GN:yvlA]


[OR:Bacillus subtilis] [DB:pir2] >gp: [GI:e1186201:g2636026] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvlA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551to 3609060.] [LE:207957] [RE:208283] [DI:complement]


>gp: [GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [LE:10417]


[RE:10743] [DI:complement] >gp: [GI:g2618844] [LN:AF017113] [AC:AF017113]


[PN:YvlA] [GN:yvlA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis 300–304 degree genomic sequence.] [LE:19550] [RE:19876] [DI:direct]


>gp: [GI:e1184419:g2636039] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvlA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091to 3809700.] [LE:10417]


[RE:10743] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24297050_c2_904
3046
6818
141
46










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24299037_c3_1238
3047
6819
255
84
68
0.045










Description


gp: [GI:g4049677] [LN:AF063866] [AC:AF063866] [PN:ORF MSV084 hypothetical


protein] [GN:MSVO84] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vrl] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:80206] [RE:80577] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24329192_c2_986
3048
6820
180
59










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24332641_c1_768
3049
6821
129
42










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24401712_c1_826
3050
6822
1125
374
117
0.0014










Description


pir: [LN:C70168] [AC:C70168] [PN:DNA polymerase I (polA) homolog]


[OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2]


>gp: [GI:g2688462] [LN:AE001156] [AC:AE00115G:AE000783] [PN:DNA polymerase I


(polA)] [GN:BB0548] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi (section 42 of 70) of the


complete genome.] [NT:similar to GB:L42023 SP:P43741 PID:1005915] [LE:6171]


[RE:8897] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24406311_c3_1111
3051
6823
135
44










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24406338_c3_1122
3052
6824
186
61










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value















AI7503000999_24407313_c2_880
3053
6825
126
41










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24407812_c3_1182
3054
6826
771
256
1062
2.2e−107










Description


gp: [GI:d1046030:g5360854] [LN:D86934] [AC:D86934]


[PN:glycerophosphoryldiester phosphodiesterase] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N039; putative] [LE:46160] [RE:>46792]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value
















AI7503000999_24407828_c3_1230
3055
6827
2013
670
157
2.1e−07










Description


gp: [GI:g4049717] [LN:AF063866] [AC:AF063866] [PN:ORF MSV156 hypothetical


protein] [GN:MSV156] [OR:Melanoplus sanguinipes entomopoxvirus]


[DB:genpept-vrl] [DE:Melanoplus sanguinipes entomopoxvirus, complete


genome.] [LE:140126] [RE:143509] [DI:direct]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24409452_c3_1294
3056
6828
432
143
132
7.6e−09










Description


sp:[LN:Y577_METJA] [AC:Q57997] [GN:MJ0577] [OR:METHANOCOCCUS JANNASCHII]


[DE:PROTEIN MJ0577] [SP:Q57997] [DB:swissprot] >pir:[LN:A64372] [AC:A64372]


[PN:hypothetical protein homolog MJ0577] [CL:Escherichia coli ybdQ protein]


[OR:Methanococcus jannaschii] [DB:pir2] [MP:F0R512975–513463]


>gp:[GI:g1591284] [LN:U67506] [AC:U67506:L77117] [PN:conserved hypothetical


protein] [GN:MJ0577] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 48 of 150 of the complete genome.]


[NT:similar to SP:P42297 PID:603780 PID:849027] [LE:8204] [RE:8692]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24411262_f1_37
3057
6829
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24412507_f2_339
3058
6830
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24414680_c1_843
3059
6831
1287
428
141
1.3e−05










Description


gp:[GI:g1041785] [LN:PYU36927] [AC:U36927] [PN:rhoptry protein]


[FN:erythrocyte invasion and possible binding] [OR:Plasmodium yoelii]


[DB:genpept-inv1] [DE:Plasmodium yoelii rhoptry protein gene, partial cds.]


[LE:<1] [RE:7206] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24414818_f3_516
3060
6832
441
146
94
0.00083










Description


sp:[LN:PHNB—ECOLI] [AC:P16681] [GN:PHNB] [OR:ESCHERICHIA COLI] [DE:PHNB


PROTEIN] [SP:P16681] [DB:swissprot] >pir:[LN:C35718]


[AC:C35718:S56335:B65220] [PN:phnB protein] [GN:phnB] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:g147195] [LN:ECOPHNAQ] [AC:J05260] [OR:Escherichia


coli] [SR:E.coli (strain B) DNA] [DB:genpept-bct1] [DE:E.coli psiD locus


containing alkylphosphonate uptake (phn) genes Athrough Q, complete cds.]


[NT:phnB protein] [LE:3767] [RE:4210] [DI:direct] >gp:[GI:g536951]


[LN:ECOUW93] [AC:U14003] [GN:phnB] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes.]


[LE:16226] [RE:16669] [DI:complement] >gp:[GI:g1790546] [LN:AE000483]


[AC:AE000483:U00096] [PN:orf, hypothetical protein] [GN:phnB] [FN:orf;


Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12


MG1655 section 373 of 400 of the complete genome.] [NT:f147; 100 pct


identical amino acid sequence and] [LE:97] [RE:540] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24424092_c2_1017
3061
6833
522
173
104
0.00027










Description


gp:[GI:e1488089:g5051453] [LN:NME242841] [AC:AJ242841] [PN:hypothetical


protein] [OR:Neisseria meningitidis] [DB:genpept-bct1] [DE:Neisseria


meningitidis DNA for opcA region, strain Z2491.] [NT:ORFA] [LE:10162]


[RE:10707] [DI:direct] >gp:[GI:e1488089:g5051453] [LN:NME242841]


[AC:AJ242841] [PN:hypothetical protein] [OR:Neisseria meningitidis]


[DB:genpept] [DE:Neisseria meningitidis DNA for opcA region, strain Z2491.]


[NT:orfA] [LE:10162] [RE:10707] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24430392_c1_856
3062
6834
681
226
1116
4.1e−113










Description


sp:[LN:MERB_STAAU] [AC:P08653] [GN:MERB] [OR:STAPHYLOCOCCUS AUREUS]


[EC:4.99.1.2] [DE:ALKYLMERCURY LYASE, (ORGANOMERCURIAL LYASE)] [SP:P08653]


[DB:swissprot] >pir: [LN:F29504] [AC:F29504] [PN:alkylmercury lyase,]


[CL:alkylmercury lyase] [OR:Staphylococcus aureus] [EC:4.99.1.2] [DB:pir2]


>gp:[GI:g459908] [LN:L29436] [AC:L29436:M15048:N00048] [PN:organomercurial


lyase] [GN:merB] [OR:Plasmid pI258] [SR:Plasmid pI258 DNA] [DB:genpept-bct1]


[DE:Plasmid pI258 (from S.aureus strain RN23 8325) mercury resistance(mer)


operon encoding mercuric reductase (merA), organomercuriallyase (merB),


regulatory protein (merR) and membrane transport protein (merT), complete


cds.] [LE:4873] [RE:5523] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24431502_c3_1121
3063
6835
846
281
347
1.3e−31










Description


gp:[GI:g3818562] [LN:AF076529] [AC:AF076529] [PN:ATP binding protein BviA]


[GN:bviA] [OR:Butyrivibrio fibrisolvens] [DB:genpept-bct2] [DE:Butyrivibrio


fibrisolvens response regulator homolog gene, partial cds; histidine kinase


homolog, butyrivibriocin AR10 operon, complete sequence; and unknown gene.]


[LE:2342] [RE:3187] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24432662_c2_1052
3064
6836
969
322
301
2.3e−47










Description


sp:[LN:YACK—ECOLI] [AC:P36649:P75655] [GN:YACK] [OR:ESCHERICHIA COLI]


[DE:PROBABLE 53.4 KD BLUE-COPPER PROTEIN YACQ PRECURSOR] [SP:P36649:P75655]


[DB:swissprot] >pir:[LN:C64735] [AC:C64735:S45200] [PN:probable


copper-binding protein yacK] [GN:yacK] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:g1786314] [LN:AE000121] [AC:AE000121:U00096] [PN:orf, hypothetical


protein] [GN:yacK] [FN:orf; Unknown] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 11 of 400 of the completegenome.]


[NT:o516; 100 pct identical to 463 residues] [LE:9364] [RE:10914]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24475252_f1_1
3065
6837
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24486008_c2_1059
3066
6838
978
325
136
1.6e−06










Description


gp:[GI:g4378164] [LN:AF102543] [AC:AF102543] [PN:unknown] [OR:Zymomonas


mobilis] [DB:genpept-bct2] [DE:Zymomonas mobilis


5,10-methylenetetrahydrofolate reductase (metF)gene, partial cds;


lipoprotein precursor (vacJ), ferredoxin-NADP+reductase (fpr), succinic


semialdehyde dehydrogenase (gabD), thymidylate synthetase (thyA), gluconate


permease (gntP), UTP-glucose-1-phosphate uridyltransferase,


diaminopimelatedecarboxylase (lysA), arginosuccinate lyase (argH),


NADH-dependent butanol dehydrogenase (yugJ), and morphine 6-dehydrogenase


(mdh)genes, complete cds; tRNA-Ala gene, complete sequence; aminopeptidase N


(pepN) gene, complete cds; and unknown genes.] [NT:zm4orf2] [LE:12502]


[RE:13458] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24641941_f3_456
3067
6839
510
169





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24645817_c2_979
3068
6840
453
150
461
1.0e−43










Description


gp:[GI:g143421] [LN:BACRGC] [AC:M57623:J05723] [PN:ribosomal protein L9]


[GN:ribosomal protein L9] [OR:Bacillus stearothermophilus]


[SR:B. stearothermophilus DNA] [DB:genpept-bct1] [DE:B. stearothermophilus


ribosomal protein L9 gene, complete cds.] [LE:1] [RE:450] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24647142_c2_930
3069
6841
645
214
575
8.7e−56










Description


gp:[GI:e352094:g2462707] [LN:SXLACRPH] [AC:Y14599] [PN:hypothetical protein]


[GN:orf5] [OR:Staphylococcus xylosus] [DB:genpept-bct1] [DE:Staphylococcus


xylosus lacR, lacP, lacH genes and 2 ORF's.] [LE:6476] [RE:7105]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24647292_f3_668
3070
6842
1275
424
1180
6.7e−120










Description


sp:[LN:PBUX_BACSU] [AC:P42086] [GN:PBUX] [OR:BACILLUS SUBTILIS] [DE:XANTHINE


PERMEASE] [SP:P42086] [DB:swissprot] >pir:[LN:S51310] [AC:S51310:E69673]


[PN:xanthine permease pbuX] [GN:pbuX] [CL:xanthine permease pbuX]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1256618] [LN:BACYACA] [AC:L77246]


[PN:transport protein] [GN:ypaQ] [FN:pyrimidine salvage] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis (YAC10-9 clone) DNA region


between the serA and kdg loci.] [NT:26% of identity to the Bacillus


caldolyticus uracil] [LE:2007] [RE:3323] [DI:direct]


>gp:[GI:e1183652:g2634625] [LN:BSUB0012] [AC:Z99115:AL009126] [PN:xanthine


permease] [GN:pbuX] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 12 of 21): from 2195541 to 2409220.]


[NT:alternate gene name:ypaQ] [SP:P42086] [LE:121829] [RE:123145]


[DI:complement] >gp:[GI:g633170] [LN:BSXPTPBUX] [AC:X83878] [PN:xanthine


permease] [GN:pbuX] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


xpt and pbuX genes.] [SP:P42086] [LE:938] [RE:2254] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24650427_f3_493
3071
6843
3126
1041
1653
2.3e−220










Description


pir:[LN:F64114] [AC:F64114] [PN:type I site-specific deoxyribonuclease,


chain hsdR] [GN:hsdR] [CL:DEAD/H box helicase homology] [OR:Haemophilus


influenzae] [EC:3.1.21.3] [DB:pir2] >gp:(GI:g1574743] [LN:U32808]


[AC:U32808:L42023] [PN:type I restriction enzyme (hsdR)] [GN:HI1285]


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 123 of 163 of the completegenome.] [NT:similar to PID:1685100


percent identity:59.01;] [LE:5702] [RE:8869] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24783462_c2_1016
3072
6844
339
112
77
0.0086










Description


gp:[GI:g2772544] [LN:STREMM40G] [AC:L46817] [PN:M-40 protein] [GN:emm40]


[FN:antiphagocytic] [OR:Streptococcus pyogenes] [DB:genpept-bct2]


[DE:Streptococcus pyogenes M-40 protein (emm40) gene, partial cds.] [LE:<1]


[RE:>341] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24797126_f1_88
3073
6845
249
82
69
0.036










Description


gp:[GI:g2772603] [LN:DMU85764] [AC:U85764] [PN:accessory gland protein


Acp32CD] [GN:Acp32CD] [FN:responsible for physiological and behavioral]


[OR:Drosophila melanogaster] [SR:fruit fly] [DB:genpept-inv1] [DE:Drosophila


melanogaster accessory gland protein Acp32CD (Acp32CD) gene, partial cds.]


[LE:74] [RE:>377] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24800412_c2_981
3074
6846
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24812927_f2_227
3075
6847
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24817142_c1_764
3076
6848
1947
648
3147
0.0










Description


pir:[LN:A40585] [AC:A40585:A35406:S54711:A42295:S36024] [PN:DNA


topoisomerase (ATP-hydrolyzing), chain B] [GN:gyrB] [CL:DNA topoisomerase


(ATP-hydrolyzing) chain B] [OR:Staphylococcus aureus] [EC:5.99.1.3]


[DB:pir1] >gp:[GI:g296395] [LN:SAGYRREC] [AC:X71437] [PN:DNA gyrase]


[GN:gyrB] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.aureus genes


gyrB, gyrA and recF (partial).] [SP:P20832] [LE:282] [RE:2216] [DI:direct]


>gp:[GI:d1001841:g540541] [LN:STAGYRABA] [AC:D10489] [PN:DNA gyrase B]


[GN:gyrB] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


[strain:ATCC12600) DNA] [DB:genpept-bct1] [EC:5.99.1.3] [DE:Staphylococcus


aureus genes for DNA gyrase A and B, complete cds.] [LE:181] [RE:2115]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24847250_f2_320
3077
6849
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_24848452_c3_1175
3078
6850
792
263
223
1.7e−18










Description


pir:[LN:H70089] [AC:H70089] [PN:hypothetical protein yycI] [GN:yycI]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1011959:g1064811] [LN:BACGNTZA]


[AC:D78193] [GN:yycI] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 36kb sequence


between gntZ and trnY genes encoding 34 ORFs.] [LE:31210] [RE:32052]


[DI:complement] >gp:[GI:e1184764:g2636585] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yycI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [LE:149594] [RE:150436] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_254527_c2_1038
3079
6851
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25548452_f1_207
3080
6852
915
304
354
2.3e−32










Description


pir:[LN:A69867] [AC:A69867] [PN:conserved hypothetical protein ykuT]


[GN:ykuT] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181925:g2632241]


[LN:BS16829KB] [AC:AJ222587] [PN:YkuT protein] [GN:ykuT] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 29kB DNA fragment from


ykwC gene to cse15 gene.] [LE:25580] [RE:26383] [DI:complement]


>gp:[GI:e1185011:g2633792] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykuT]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21): from 1394791 to 1603020.] [NT:similar to


hypothetical proteins] [LE:95836] [RE:96639] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25554012_c2_912
3081
6853
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25554675_c3_1094
3082
6854
927
308
179
2.5e−11










Description


sp:[LN:SR40_YEAST] [AC:P32583] [GN:SRP40:YKR092C:YKR412A] [OR:SACCHAROMYCES


CEREVISIAE] [SR:,BAKER'S YEAST] [DE:SUPPRESSOR PROTEIN SRP40] [SP:P32583]


[DB:swissprot] >pir:[LN:538170] [AC:S38170:S40645:S37702] [PN:SRP40


protein:protein YKR092c:protein YKR412a] [GN:SRP40] [OR:Saccharomyces


cerevisiae] [DB:pir2] [MP:11R] >gp:[GI:g450552] [LN:SCDNACHXI] [AC:X73541]


[OR:Saccharomyces cerevisiae] [SR:baker's yeast] [DB:genpept-pln1]


[DE:S.cerevisiae DNA of chromosome XI, right arm.] [NT:ORF YKR412]


[SP:P32583] [LE:1952] [RE:3172] [DI:complement] >gp:[GI:g486581]


[LN:SCYKR092C] [AC:Z28317:Y13137] [GN:SRP40] [OR:Saccharomyces cerevisiae]


[SR:baker's yeast] [DB:genpept-pln1] [DE:S.cerevisiae chromosome XI reading


frame ORF YKR092c.] [NT:ORF YKR092c] [SP:P32583] [LE:400] [RE:1620]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25565637_f2_257
3083
6855
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25583568_f1_12
3084
6856
363
120
71
0.022










Description


pir:[LN:T03326] [AC:T03326] [PN:gene 119 protein] [GN:119] [OR:Lactococcus


phage bIL170] [DB:pir2] >gp:[GI:g3282279] [LN:AF009630] [AC:AF009630]


[PN:119] [GN:119] [OR:bacteriophage bIL170] [DB:genpept-phg]


[DE:Bacteriophage bIL170, complete genome.] [LE:15351] [RE:15644]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25587802_c1_809
3085
6857
777
258
114
0.00010










Description


sp:[LN:FLIZ_BORBU] [AC:Q44904:Q44764] [GN:FLIZ:BB0276] [OR:BORRELIA


BURGDORFERI] [SR:,LYME DISEASE SPIROCHETE] [DE:FLAGELLAR PROTEIN FLIZ]


[SP:Q44904:Q44764] [DB:swissprot] >pir:[LN:D70134] [AC:D70134]


[PN:flagellar biosynthesis protein (fliZ) homolog] [OR:Borrelia burgdorferi]


[SR:,Lyme disease spirochete] [DB:pir2] >gp:[GI:g1165261] [LN:BBU43739]


[AC:U43739] [PN:FliZ] [GN:fliZ] [OR:Borrelia burgdorferi] [SR:Lyme disease


spirochete strain=B31] [DB:genpept-bct1] [DE:Borrelia burgdorferi fesmid


clone 31, complete sequence.] [NT:flagellar protein required for flagella


formation] [LE:9847] [RE:10473] [DI:complement] >gp:[GI:g2688190]


[LN:AE001137] [AC:AE001137:AE000783] [PN:flagellar biosynthesis protein


(fliZ)] [GN:BB0276] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi (section 23 of 70) of the


complete genome.] [NT:similar to PID:1165261 PID:1185058 SP:Q44904]


[LE:15237] [RE:15863] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25642038_f3_481
3086
6858
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25660880_c2_975
3087
6859
177
58/





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25667767_c3_1114
3088
6860
1191
396
907
5.7e−91










Description


pir:[LN:B69847] [AC:B69847] [PN:cystathionine beta-lyase homolog yjcJ]


[GN:yjcJ] [CL:O-succinylhomoserine (thiol)-lyase] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183208:g2633542] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjcJ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21): from 1194391 to 1411140.]


[NT:similar to cystathionine beta-lyase] [LE:64687] [RE:65859] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25679712_f3_626
3089
6861
660
219
153
2.0e−09










Description


gp:[GI:e1315386:g3417427] [LN:SPBC30B4] [AC:AL031262] [PN:hypothetical


protein] [GN:SPBC30B4.01c] [OR:Schizosaccharomyces pombe] [SR:fission yeast]


[DB:genpept-pln1] [DE:S. pombe chromosome II cosmid c30B4.] [NT:SPBC30B4.01c,


len:344aa, similarity, YNL283C,] [LE:<1] [RE:1034] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25792911_c1_777
3090
6862
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_25831512_c3_1105
3091
6863
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26172675_f1_124
3092
6864
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26181512_c2_1003
3093
6865
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26198535_c3_1116
3094
6866
765
254
136
5.4e−07










Description


pir:[LN:D70817] [AC:D70817] [PN:hypothetical protein Rv1716] [GN:Rv1716]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e1299966:g3261548]


[LN:MTV048] [AC:AL022003:AL123456] [PN:hypothetical protein Rv1716]


[GN:Rv1716] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 77/162.]


[NT:Rv1716, (MTV048.03,MTCY04C12.01) len:276. Unknown] [LE:1750] [RE:2580]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26214002_f3_647
3095
6867
870
289
627
2.7e−61










Description


sp:[LN:SPOJ_BACSU] [AC:P26497] [GN:SPO0J] [OR:BACILLUS SUBTILIS] [DE:STAGE 0


SPORULATION PROTEIN J] [SP:P26497] [DB:swissprot] >pir:[LN:A38536]


[AC:I40445:A38536:S66020:E69710:S18081] [PN:Soj antagonist/chromosome


positioning and transport protein spo0J:spo0J93 protein:stage 0 sporulation


protein J93] [GN:spo0J:spo0J93] [CL:Bacillus subtilis transport protein


spo0J] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005768:g467380]


[LN:BAC180K] [AC:D26185] [PN:stage 0 sporultion] [GN:spo0J] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:53552] [RE:54400] [DI:complement] >gp:[GI:g40031] [LN:BSORIGS]


[AC:X62539] [GN:spoOJ93] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genes rpmH, rnpA, 50kd, gidA and gidB.] [SP:P26497] [LE:9000]


[RE:9848] [DI:direct] >gp:[GI:e1184822:g2636643] [LN:BSUB0021]


[AC:Z99124:AL009126] [PN:antagonist of Soj] [GN:spo0J] [FN:involved in


positionning part of the chromosome] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P26497] [LE:205484] [RE:206332] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26261512_f2_275
3096
6868
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26351510_f2_375
3097
6869
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26365911_f1_165
3098
6870
561
186
203
2.3e−16










Description


pir:[LN:E69779] [AC:E69779] [PN:transcription regulator TetR/AcrR family


homolog ydeS] [GN:ydeS] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020119:g1881339] [LN:AB001488] [AC:AB001488] [GN:ydeS]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:PROBABLE TRANSCRIPTIONAL REGULATOR,


SIMILAR TO] [LE:111555] [RE:112151] [DI:direct] >gp:[GI:e1182498:g2632832]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydeS] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21): from 402751 to 611850.] [NT:similar to transcriptional regulator


(TetR/AcrR] [LE:175301] [RE:175897] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26597010_f3_530
3099
6871
186
61
103
2.9e−05










Description


sp:[LN:Y4UH_RHISN] [AC:Q53200] [GN:Y4UH] [OR:RHIZOBIUM SP] [SR:NGR234,]


[DE:PUTATIVE INSERTION SEQUENCE ATP-BINDING PROTEIN Y4UH] [SP:Q53200]


[DB:swissprot] >gp:[GI:e213893:g1486429] [LN:RSPNGR234] [AC:Z68203]


[PN:transposase homologue] [GN:orf10] [OR:Rhizobium sp.] [SR:Rhizobium sp]


[DB:genpept-bct1] [DE:Rhizobium sp. plasmid NGR234a DNA.] [NT:putative]


[SP:Q53200] [LE:13370] [RE:14116] [DI:complement] >gp:[GI:g2182658]


[LN:AE000099] [AC:AE000099:U00090] [PN:Y4uH] [GN:y4uH] [OR:Rhizobium sp.


NGR234] [DB:genpept-bct2] [DE:Rhizobium sp. NGR234 plasmid pNGR234a, section


36 of 46 of the complete plasmid sequence.] [NT:putative insertion sequence


ATP-binding protein] [LE:8181] [RE:8927] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_266000015_f1_162
3100
6872
354
117
280
1.6e−24










Description


sp:[LN:RNPA_BACSU] [AC:P25814] [GN:RNPA] [OR:BACILLUS SUBTILIS]


[EC:3.1.26.5] [DE:RIBONUCLEASE P PROTEIN COMPONENT, (PROTEIN C5) (RNASE P)]


[SP:P25814] [DB:swissprot] >pir:[LN:S66029] [AC:S66029:D69693]


[PN:ribonuclease P protein component rnpA] [GN:rnpA] [CL:ribonuclease P,


protein component] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005777:g467389] [LN:BAC180K] [AC:D26185] [PN:protein component of


ribonuclease P] [GN:rnpA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:62749] [RE:63099]


[DI:complement] >gp:[GI:e1184831:g2636652] [LN:BSUB0021]


[AC:Z99124:AL009126] [PN:ribonuclease P (protein component)] [GN:rnpA]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.1.26.5] [DE:Bacillus subtilis


complete genome (section 21 of 21): from 3999281 to 4214814.] [SP:P25814]


[LE:214681] [RE:215031] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26604502_f2_390
3101
6873
159
52
205
1.4e−16










Description


sp:[LN:RL34_BACST] [AC:P23376] [GN:RPMH] [OR:BACILLUS STEAROTHERMOPHILUS]


[DE:50S RIBOSOMAL PROTEIN L34] [SP:P23376] [DB:swissprot] >pir:[LN:C48396]


[AC:C48396] [PN:ribosomal protein L34] [CL:Escherichia coli ribosomal


protein L34] [OR:Bacillus stearothermophilus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26615636_f1_194
3102
6874
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26756660_c2_950
3103
6875
651
216
19
0.00035










Description


pir:[LN:B69858] [AC:B69858] [PN:hypothetical protein yknW] [GN:yknW]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185024:g2633805] [LN:BSUB0008]


[AC:Z99111:AL009126] [GN:yknW] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:108197] [RE:108892] [DI:direct]


>gp:[GI:g3282118] [LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:YknW]


[GN:yknW] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


mobA-nprE gene region.] [LE:8685] [RE:9380] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_26759707_c1_830
3104
6876
450
149
504
2.9e−48










Description


gp:[GI:d1046006:g5360830] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N044] [LE:28947] [RE:29264] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_270890_c3_1162
3105
6877
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2745462_c1_691
3106
6878
642
213
116
0.00066










Description


gp:[GI:e1407824:g4493894] [LN:PFMAL3P2] [AC:AL034558] [GN:MAL3P2.16]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P2, complete sequence.]


[NT:predicted using hexExon; MAL3P2.16 (PF0235w),] [LE:73132:73647]


[RE:73149:77270] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2782563_c3_1129
3107
6879
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2819632_f1_105
3108
6880
387
128





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2867812_c2_1060
3109
6881
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2921941_c1_680
3110
6882
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2925292_f2_325
3111
6883
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2931557_c3_1158
3112
6884
1119
372
1692
3.7e−174










Description


sp:[LN:RECF_STAAU] [AC:P29232] [GN:RECF] [OR:STAPHYLOCOCCUS AUREUS] [DE:RECF


PROTEIN] [SP:P29232] [DB:swissprot] >pir:[LN:C40585]


[AC:S54710:C40585:C42295:S36023] [PN:recF protein] [CL:recF protein]


[OR:Staphylococcus aureus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_29320127_c3_1181
3113
6885
390
129
677
1.4e−66










Description


gp:[GI:d1046033:g5360857] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF CN041] [LE:47629] [RE:>48018] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_2946092_c2_1006
3114
6886
435
144
97
0.00051










Description


pir:[LN:F71224] [AC:F71224] [PN:hypothetical protein PH0057] [GN:PH0057]


[CL:protein kinase C inhibitor:histidine triad homology] [OR:Pyrococcus


horikoshii] [DB:pir2] >gp:[GI:d1030068:g3256442] [LN:AP000001]


[AC:AP000001:AB009465:AB009464:AB009466:AB009467:AB009468:AB009469]


[PN:168aa long hypothetical protein] [GN:PH0057] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 1-287000 nt. position (1/7).] [NT:similar to


owl:HPAE00058613 percent identity:] [LE:49752] [RE:50258] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_29532926_c3_1128
3115
6887
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_29860902_c3_1115
3116
6888
2277
758
1816
2.7e−187










Description


pir:[LN:C69657] [AC:C69657] [PN:cobalamin-independent methionine synthase


metC] [GN:metC] [CL:cobalamin-independent methionine synthase] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1181518:g2632038] [LN:BSAJ2571] [AC:AJ002571]


[PN:MetC] [GN:metC] [FN:involved in methionine metabolism] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment


between xlyA and ykoR.] [SP:P80877] [LE:35445] [RE:37733] [DI:complement]


>gp:[GI:e1183338:g2633672] [LN:BSUB0007] [AC:Z99110:AL009126]


[PN:cobalamin-independent methionine synthase] [GN:metC] [FN:methionine


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21): from 1194391 to 1411140.] [SP:P80877]


[LE:188394] [RE:190682] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3007887_f1_113
3117
6889
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_30080255_f1_172
3118
6890
384
127





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_30084637_f3_567
3119
6891
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_30086682_c2_1041
3120
6892
732
243
1134
5.1e−115










Description


pir:[LN:C29504] [AC:C29504] [PN:hypothetical 24K protein (mer operon)]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g459905] [LN:L29436]


[AC:L29436:M15048:N00048] [OR:Plasmid pI258] [SR:Plasmid pI258 DNA]


[DB:genpept-bct1] [DE:Plasmid pI258 (from S.aureus strain RN23 8325) mercury


resistance(mer) operon encoding mercuric reductase (merA),


organomercuriallyase (merB), regulatory protein (merR) and membrane


transport protein (merT), complete cds.] [NT:ORF4] [LE:1936] [RE:2616]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_30111718_c2_1051
3121
6893
2124
707
1980
7.5e−211










Description


sp:[LN:COPB_ENTHR] [AC:P05425] [GN:COPB] [OR:ENTEROCOCCUS HIRAE]


[EC:3.6.1.36] [DE:COPPER/POTASSIUM-TRANSPORTING ATPASE B,] [SP:P05425]


[DB:swissprot] >pir:[LN:B45995] [AC:B45995] [PN:copper-transporting ATPase,


copB] [GN:copB] [CL:Enterococcus copper-transporting ATPase copB: ATPase


nucleotide-binding domain homology:ATPase transduction domain homology]


[OR:Enterococcus hirae] [EC:3.6.1.-] [DB:pir1] >gp:(GI:g290643]


[LN:ENECOPPUMP] [AC:L13292:J02729] [PN:ATPase] [GN:copB] [FN:copper pump]


[OR:Enterococcus hirae] [SR:Enterococcus hirae DNA] [DB:genpept-bct1]


[DE:Enterococcus hirae ATPase (copA) gene, complete cds; ATPase (copB)gene,


complete cds.] [NT:putative] [LE:2273] [RE:4510] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_30516552_f1_160
3122
6894
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_31267125_c3_1216
3123
6895
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_31443827_f2_419
3124
6896
510
169
563
1.6e−54










Description


sp:[LN:SSB_BACSU] [AC:P37455] [GN:SSB] [OR:BACILLUS SUBTILIS]


[DE:SINGLE-STRAND BINDING PROTEIN (SSB) (HELIX-DESTABILIZING PROTEIN)]


[SP:P37455] [DB:swissprot] >pir:[LN:S66014] [AC:S66014:F69718] [PN:single


strand DNA binding protein ssb] [GN:ssb] [CL:single-stranded DNA-binding


protein: single-stranded DNA-binding protein homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1005762:g467374] [LN:BAC180K] [AC:D26185]


[PN:single strand DNA binding protein] [GN:ssb] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:46882] [RE:47400] [DI:complement] >gp:[GI:e1184816:g2636637]


[LN:BSUB0021] [AC:Z99124:AL009126] [PN:single-strand DNA-binding protein]


[GN:ssb] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 21 of 21): from 3999281 to 4214814.] [SP:P37455]


[LE:198814] [RE:199332] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_31535626_f3_569
3125
6897
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3158177_f2_232
3126
6898
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_32062762_c2_954
3127
6899
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_32226577_c3_1254
3128
6900
354
117
596
5.2e−58










Description


pir:[LN:B29504] [AC:B29504] [PN:hypothetical 18K protein (mer operon)]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g459904] [LN:L29436]


[AC:L29436:M15048:N00048] [OR:Plasmid pI258] [SR:Plasmid pI258 DNA]


[DB:genpept-bct1] [DE:Plasmid pI258 (from S.aureus strain RN23 8325) mercury


resistance(mer) operon encoding mercuric reductase (merA),


organomercuriallyase (merB), regulatory protein (merR) and membrane


transport protein (merT), complete cds.] [NT:ORF3] [LE:1454] [RE:1939]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_32423410_c1_718
3129
6901
210
69
167
1.5e−12










Description


sp:[LN:YG27_ARCFU] [AC:O28646] [GN:AF1627] [OR:ARCHAEOGLOBUS FULGIDUS]


[DE:HYPOTHETICAL TRANSCRIPTIONAL REGULATOR AF1627] [SP:O28646]


[DB:swissprot] >pir:[LN:B69453] [AC:B69453] [PN:repressor protein homolog]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2648932] [LN:AE000990]


[AC:AE000990:AE000782] [PN:repressor protein] [GN:AF1627] [OR:Archaeoglobus


fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 117 of 172 of


the complete genome.] [NT:similar to GB:L77117 PID:1590997 percent


identity:] [LE:7667] [RE:7882] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_32577_f3_495
3130
6902
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3320317_f3_648
3131
6903
237
78
150
9.5e−11










Description


gp:[GI:g2109447] [LN:SPDNAARG] [AC:AF000658] [FN:unknown] [OR:Streptococcus


pneumoniae] [DB:genpept-bct2] [DE:Streptococcus pneumoniae R801 tRNA-Arg


gene, partial sequence, and putative serine protease (sphtra), SPSpoJ


(spspoJ), initiator protein (spdnaa) and beta subunit of DNA polymerase III


(spdnan)genes, complete cds.] [NT:ORFX] [LE:5708] [RE:5902] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33228180_f1_192
3132
6904
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33244187_c3_1168
3133
6905
1989
662
1592
1.5e−163










Description


sp:[LN:YYBT_BACSU] [AC:P37484] [GN:YYBT] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 74.3 KD PROTEIN IN RPLI-COTF INTERGENIC REGION] [SP:P37484]


[DB:swissprot] >pir:[LN:S65976] [AC:S65976:G70088] [PN:hypothetical protein


yybT] [GN:yybT] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005724:g467336]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:11639]


[RE:13618] [DI:complement] >gp:[GI:e1184777:g2636598] [LN:BSUB0021)


[AC:Z99124:AL009126] [GN:yybT] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P37484] [LE:163571] [RE:165550] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33261588_c2_1004
3134
6906
690
229





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33261637_c3_1237
3135
6907
543
180
79
0.0068










Description


gp:[GI:g765070] [LN:STAATL] [AC:L41499] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain 8325/4) DNA] [DB:genpept-bct1]


[DE:Staphylococcus aureus ORF1, partial cds, ORF2, ORF3, autolysin(at1)


genes, complete cds.] [NT:ORF1] [LE:<1] [RE:249] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33337760_c2_983
3136
6908
705
234
1191
4.6e−121










Description


gp:[GI:g5114230] [LN:AF136709] [AC:AF136709] [PN:response regulator YycF]


[GN:yycF] [OR:Staphylococcus aureus] [DB:genpept] [DE:Staphylococcus aureus


response regulator YycF (yycF) and histidinekinase YycG (yycG) genes,


complete cds.] [LE:649] [RE:1350] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33720053_c1_808
3137
6908
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33790702_f3_612
3138
6910
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33867212_f3_548
3139
6911
339
112





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_33994126_f3_633
3140
6912
144
47
47
0.045










Description


gp:[GI:g1204027] [LN:UREUREASEA] [AC:L40489] [OR:Ureaplasma urealyticum]


[SR:Ureaplasma urealyticum (strain 7) DNA] [B:genpept-bct1] [DE:Ureaplasma


urealyticum strain 7 urease operon encoding ORF1, ureA, ureB, ureC, ureE,


ureF, and ureG, complete cds, and ureD genes, 5′ end of cds.] [NT:ORF1;


Protein sequence is in conflict with the] [LE:136] [RE:468] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34016880_f2_333
3141
6913
2028
675
3474
0.0










Description


pir:[LN:JQ0774] [AC:JQ0774] [PN:penicillin-binding protein mecA,


low-affinity:penicillin-binding protein 2′] [GN:mecA] [OR:Staphylococcus


epidermidis] [DB:pir2] >gp:[GI:g46994] [LN:SEMECAPB] [AC:X52592]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:S. epidermidis mecA


gene for PBP2′ (penicillin binding protein 2′).] [NT:PBP2′ (AA1–668)]


[LE:141] [RE:2147] [DI:direct] >gp:[GI:d1046026:g5360850] [LN:D86934]


[AC:D86934] [PN:penicillin binding protein 2] [GN:mecA] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of


N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N058] [LE:43471] [RE:45477] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3401887_f1_225
3142
6914
1485
494
1969
1.7e−203










Description


pir:[LN:DEBSMP] [AC:S66039:S12623:D69638] [PN:IMP


dehydrogenase,:inositol-monophosphate dehydrogenase guaB] [GN:guaB] [CL:IMP


dehydrogenase:CBS homology] [OR:Bacillus subtilis] [EC:1.1.1.205] [DB:pir1]


>gp:[GI:d1005787:g467399] [LN:BAC180K] [AC:D26185] [PN:IMP dehydrogenase]


[GN:guaB] [OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:79515] [RE:80981] [DI:direct]


>gp:[GI:e1181942:g2632276] [LN:BSUB0001] [AC:Z99104:AL009126]


[PN:inositol-monophosphate dehydrogenase] [GN:guaB] [FN:GMP biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:1.1.1.205] [DE:Bacillus


subtilis complete genome (section 1 of 21): from 1 to 213080.] [NT:alternate


gene name:guaA] [SP:P21879] [LE:15913] [RE:17379] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34023251_f2_389
3143
6915
198
65
68
0.045










Description


gp:[GI:g205733] [(LN:RATNKBNT4] [AC:M21187:J03185:M18622] [OR:Rattus


norvegicus] [SR:Rat testis DNA, clone rNT19] [DB:genpept-rod] [DE:Rat


neurotensin/neuromedin N gene, exon 4.] [NT:preproneurotensin/neuromedin N]


[LE:M21218.1:8:11] [RE:232:163] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34160260_f2_322
3144
6916
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34178401_f3_462
3145
6917
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34179761_c2_903
3146
6918
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34180340_f2_398
3147
6919
711
236
609
2.2e−59










Description


gp:[GI:d1025734:g2879914] [LN:D85752] [AC:D85752] [GN:bacH] [OR:Enterococcus


faecalis] [SR:Enterococcus faecalis plasmid:pPD1 DNA] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pPD1 bacA, bacB, bacC, bacD, bacE, bacF,


bacG, bacH and bacI genes, complete cds.] [LE:7148] [RE:7735] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34182952_f3_625
3148
6920
402
133
88
0.013










Description


pir:[LN:G69850] [AC:G69850] [PN:hypothetical protein yjhA] [GN:yjhA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183238:g2633572] [LN:BSUB0007]


[AC:Z99110:AL009126] [GN:yjhA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7 of 21):


from 1194391 to 1411140.] [LE:94377] [RE:95018] [DI:direct] >gp:[GI:g2612890]


[LN:AF015825] [AC:AF015825] [PN:putative lipoprotein] [GN:yjhA] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 168 cotT-rapA region


sequence.] [LE:8537] [RE:9178] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34266582_c2_965
3149
6921
1158
385
1796
3.6e−185










Description


sp:[LN:DP3B_STAAU] [AC:P50029] [GN:DNAN] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.7.7.7] [DE:DNA POLYMERASE III, BETA CHAIN,] [SP:P50029] [DB:swissprot]


>pir:[LN:S54708] [AC:S54708] [PN:DNA-directed DNA polymerase, III beta


chain:dnaN] [GN:dnaN] [CL:DNA-directed DNA polymerase III beta chain]


[OR:Staphylococcus aureus] [EC:2.7.7.7] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34414012_f1_211
3150
6922
273
90
336
1.8e−30










Description


pir:[LN:S66013] [AC:S66013:S11368:A69701] [PN:ribosomal protein S18


(rpsR):ribosomal protein BS21] [GN:rpsR] [CL:Escherichia coli ribosomal


protein S18] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005761:g467373]


[LN:BAC180K] [AC:D26185] [PN:ribosomal protein S18] [GN:rpsR] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (sub_species:Marburg, strain:168) DNA]


[DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region of replication


origin.] [LE:46599] [RE:46844] [DI:complement] >gp:[GI:e1184815:g2636636]


[LN:BSUB0021] [AC:Z99124:AL009126] [PN:ribosomal protein S18] [GN:rpsR]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 21 of 21): from 3999281 to 4214814.] [SP:P21475] [LE:198531]


[RE:198776] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34414187_c1_692
3151
6923
399
132
152
5.8e−11










Description


pir:[LN:B69778] [AC:B69778] [PN:hypothetical protein ydeH] [GN:ydeH]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020108:g1881328] [LN:AB001488]


[AC:AB001488] [GN:ydeH] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:FUNCTION


UNKNOWN.] [LE:100881] [RE:101327] [DI:direct] >gp:[GI:e1182486:g2632820]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydeH] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21): from 402751 to 611850.] [LE:164626] [RE:165072] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34417552_f3_615
3152
6924
381
126





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34417813_c2_985
3153
6925
807
268
851
4.9e−85










Description


pir:[LN:A70090] [AC:A70090] [PN:hypothetical protein yycJ] [GN:yycJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1011958:g1064810] [LN:BACGNTZA]


[AC:D78193] [GN:yycJ] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis 36kb sequence


between gntZ and trnY genes encoding 34 ORFs.] [LE:30382] [RE:31188]


[DI:complement] >gp:[GI:e1184763:g2636584] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yycJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [LE:148766] [RE:149572] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34580342_c1_730
3154
6926
771
256
802
7.7e−80










Description


pir:[LN:A70001] [AC:A70001] [PN:ABC transporter (ATP-binding protein)


homolog ytsC] [GN:ytsC] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185911:g2635522] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytsC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:112638] [RE:113399] [DI:complement] >gp:[GI:g2293177]


[LN:AF008220] [AC:AF008220] [PN:transporter] [GN:ytsC] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:67028] [RE:67789] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34631527_f1_20
3155
6927
834
277
609
2.2e−59










Description


gp:[GI:d1045999:g5360823] [LN:D86934] [AC:D86934] [PN:IS150-like


transposase] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N028; putative]


[LE:<20180] [RE:20578] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34643751_c1_688
3156
6928
591
196
910
2.8e−91










Description


gp:[GI:g1916316] [LN:SAU92441] [AC:U92441:X85029] [PN:alkyl hydroperoxide


reductase subunit C] [GN:ahpC] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus alkyl hydroperoxide reductase subunit C(aphC) and


subunit F (aphF) genes, complete cds.] [NT:AhpC] [LE:791] [RE:1360]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_34664700_f2_393
3157
6929
861
286
617
3.1e−60










Description


sp:[LN:YYAA_BACSU] [AC:P37524] [GN:YYAA] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 32.8 KD PROTEIN IN SPO0J-GIDB INTERGENIC REGION]


[SP:P37524] [DB:swissprot] >pir:[LN:I40442] [AC:I40442:S66023:H70083:S18078]


[PN:DNA-binding protein Spo0J-like homolog yyaA:probable DNA binding


protein (replication origin region)] [GN:yyaA] [CL:Bacillus subtilis


transport protein spo0J] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1005771:g467383] [LN:BAC180K] [AC:D26185] [PN:DNA binding protein


(probable)] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis


DNA, 180 kilobase region of replication origin.] [LE:55893] [RE:56744]


[DI:complement] >gp:[GI:g40028] [LN:BSORIGS] [AC:X62539] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genes rpmH, rnpA, 50kd, gidA and


gidB.] [NT:unnamed protein product] [SP:P37524] [LE:6656] [RE:7507]


[DI:direct] >gp:[GI:e1184825:g2636646] [LN:BSUB0021] [AC:Z99124:AL009126]


[GN:yyaA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 21 of 21): from 3999281 to 4214814.]


[NT:similar to DNA-binding protein Spo0J-like] [SP:P37524] [LE:207825]


[RE:208676] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35157813_f2_244
3158
6930
519
172
473
5.6e−45










Description


sp:[LN:ATDA_ECOLI] [AC:P37354] [GN:SPEG] [OR:ESCHERICHIA COLI] [EC:2.3.1.57]


[DE:ACETYLTRANSFERASE) (SAT)] [SP:P37354] [DB:swissprot]


>gp:[GI:d1016007:g1742583] [LN:D90799] [AC:D90799:AB001340] [PN:Spermidine


N1-acetyltransferase (EC 2.3.1.57)] [GN:speG] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E.coli genomic DNA, Kohara clone #308(35.3–35.7


min).] [NT:ORF_ID:o309#16; similar to [SwissProt Accession] [LE:<18154]


[RE:18711] [DI:direct] >gp:[GI:d1016029:g1742606] [LN:D90800]


[AC:D90800:AB001340] [PN:Spermidine N1-acetyltransferase (EC 2.3.1.57)]


[GN:speG] [OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone_lib:Kohara lambda minise] [DB:genpept-bct1] [DE:E.coli genomic DNA,


Kohara clone #309(35.4–35.7 min.).] [ENT:ORF_ID:o309#16; similar to


[SwissProt Accession] [LE:<14930] [RE:15487] [DI:direct]


>gp:[GI:d1016031:g1742609] [LN:D90801] [AC:D90801:AB001340] [PN:Spermidine


N1-acetyltransferase (EC 2.3.1.57)] [GN:speG] [OR:Escherichia coli]


[SR:Escherichia coli (strain:K12) DNA, clone_lib:Kohara lambda minise]


[DB:genpept-bct1] [DE:E.coli genomic DNA, Kohara clone #310(35.7–36.0


min.).] [NT:ORF_ID:o309#16; similar to [SwissProt Accession] [LE:<814]


[RE:1371] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35324092_c1_772
3159
6931
987
328
219
9.3e−28










Description


sp:[LN:MET2_YEAST] [AC:P08465] [GN:MET2:YNL277W:N0615] [OR:SACCHAROMYCES


CEREVISIAE] [SR:,BAKER'S YEAST] [EC:2.3.1.31] [DE:ACETYLASE)] [SP:P08465]


[DB:swissprot] >pir:[LN:S63251] [AC:S63251:A27163] [PN:homoserine


O-acetyltransferase,:protein N0615:protein YNL277w] [GN:MET2]


[CL:homoserine acetyltransferase] [OR:Saccharomyces cerevisiae]


[EC:2.3.1.31] [DB:pir2] [MP:14L] >gp:[GI:e239735:g1302344] [LN:SCYNL277W]


[AC:Z71553:Y13139] [GN:MET2] [OR:Saccharomyces cerevisiae] [SR:baker's


yeast] [DB:genpept-pln1] [DE:S.cerevisiae chromosome XIV reading frame ORF


YNL277w.] [NT:ORF YNL277w] [SP:P08465] [LE:896] [RE:2356] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35334686_f2_331
3160
6932
1659
552
1253
1.2e−127










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35343807_f1_220
3161
6933
237
78





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35369052_c1_774
3162
6934
1404
467
1261
1.8e−128










Description


gp:[GI:g4416322] [LN:AF106032] [AC:AF106032] [PN:replicative helicase]


[GN:dnaB] [OR:Bacillus stearothermophilus] [DB:genpept-bct2] [DE:Bacillus


stearothermophilus replicative helicase (dnaB) gene, complete cds.] [NT:5′-


3′ helicase; similar to Bacillus subtilis DnaC;] [LE:1] [RE:1365]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35554635_c2_1001
3163
6935
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35944052_c1_682
3164
6936
690
229





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35978127_f3_661
3165
6937
777
258
559
4.3e−54










Description


sp:[LN:YWCG_BACSU] [AC:P39605] [GN:YWCG:IPA-43D] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 28.3 KD PROTEIN IN QOXD-VPR INTERGENIC REGION] [SP:P39605]


[DB:swissprot] >pir:[LN:S39698] [AC:S39698:B70053] [PN:NADPH-flavin


oxidoreductase homolog ywcG:protein ipa-43d] [GN:ywcG] [CL:NADPH-flavin


oxidoreductase homolog] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g413967]


[LN:BSGENR] [AC:X73124] [GN:ipa-43d] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic region (325 to 333).] [SP:P39605]


[LE:45340] [RE:46089] [DI:direct] >gp:[GI:e1186310:g2636346] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywcG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [NT:alternate gene name:ipa-43d; similar to]


[SP:P39605] [LE:111873] [RE:112622] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35984430_f2_444
3166
6938
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_35991677_c2_973
3167
6939
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36135952_f2_327
3168
6940
1650
549
2777
4.0e−289










Description


gp:[GI:d1046002:g5360826] [LN:D86934] [AC:D86934] [PN:site-specific


recombinase] [GN:ccrB] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N037; cassette


chromosome recombinase B] [LE:25508] [RE:27136] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36147301_f3_670
3169
6941
237
78
78
0.0090










Description


sp:[LN:COTE_BACSU] [AC:P14016] [GN:COTE] [OR:BACILLUS SUBTILIS] [DE:SPORE


COAT PROTEIN E] [SP:P14016] [DB:swissprot] >pir:[LN:A31245]


[AC:A31245:B69605] [PN:outer spore coat protein cotE] [GN:cotE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1200225] [LN:BSCOTE] [AC:X13009]


[PN:coat protein] [GN:cotE] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis cotE gene for 21kD coat protein.] [SP:P14016] [LE:390]


[RE:935] [DI:direct] >gp:[GI:e1185294:g2634075] [LN:BSUB0009]


[AC:Z99112:AL009126] [PN:morphogenic protein] [GN:cotE] [FN:outer coat


assembly] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 9 of 21): from 1598421 to 1807200.] [SP:P14016]


[LE:176015] [RE:176560] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36211052_c1_855
3170
6942
1662
553
2755
8.5e−287










Description


sp:[LN:MERA_STAAU] [AC:P08663] [GN:MERA] [OR:STAPHYLOCOCCUS AUREUS]


[EC:1.16.1.1] [DE:MERCURIC REDUCTASE, (HG(II) REDUCTASE)] [SP:P08663]


[DB:swissprot] >pir:[LN:E29504] [AC:E29504] [PN:mercury(II)


reductase,:Hg(II) reductase:mercuric reductase] [GN:merA] [CL:Bacillus


mercury(II) reductase:dihydrolipoamide dehydrogenase


homology:heavy-metal-associated homology] [OR:Staphylococcus aureus]


[EC:1.16.1.1] [DB:pir2] >gp:[GI:g459907] [LN:L29436]


[AC:L29436:M15048:N00048] [PN:mercuric reductase] [GN:merA] [OR:Plasmid


pI258] [SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 (from


S.aureus strain RN23 8325) mercury resistance(mer) operon encoding mercuric


reductase (merA), organomercuriallyase (merB), regulatory protein (merR) and


membrane transport protein (merT), complete cds.] [LE:3148] [RE:4791]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36225427_f2_319
3171
6943
615
204





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36226501_c2_1018
3172
6944
891
296





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36228126_f2_392
3173
6945
1896
631
2407
6.42−250










Description


sp:[LN:GIDA_BACSU] [AC:P25812] [GN:GIDA] [OR:BACILLUS SUBTILIS] [DE:GLUCOSE


INHIBITED DIVISION PROTEIN A] [SP:P25812] [DB:swissprot] >pir:[LN:BWBSGA]


[AC:I40440:566025:G69631:JQ1216:S18076] [PN:glucose-inhibited division


protein gidA] [GN:gidA] [CL:gidA protein] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:d1005773:g467385] [LN:BAC180K] [AC:D26185] [PN:unknown] [GN:gidA]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:57599] [RE:59485] [DI:complement]


>gp:[GI:g40026] [LN:BSORIGS] [AC:X62539] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genes rpmH, rnpA, 50kd, gidA and gidB.]


[NT:homologous to E.coli gidA] [SP:P25812] [LE:3915] [RE:5801] [DI:direct]


>gp:[GI:e1184827:g2636648] [LN:BSUB0021] [AC:Z99124:AL009126]


[PN:glucose-inhibited division protein] [GN:gidA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P25812] [LE:209531] [RE:211417] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36359761_f3_604
3174
6946
840
279
581
2.0e−56










Description


sp:[LN:YFOL_STRTR] [AC:P96051] [OR:STREPTOCOCCUS THERMOPHILUS]


[DE:(ORF1091)] [SP:P96051] [DB:swissprot] >gp:[GI:g1685111] [LN:STU58210]


[AC:U58210] [OR:Streptococcus thermophilus] [SR:Streptococcus thermophilus


strain=Sfi6] [DB:genpept-bct2] [DE:Streptococcus thermophilus


tetrahydrofolate dehydrogenase/cyclohydrolase (folD), penicillin-binding


protein 2b(pbp2b) and DNA repair and recombination protein (recM)


genes, complete cds.] [NT:orf1091] [LE:1091] [RE:1927] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36522507_f1_163
3175
6947
741
246
740
2.9e−73










Description


sp:[LN:GIDB_BACSU] [AC:P25813] [GN:GIDB] [OR:BACILLUS SUBTILIS] [DE:GLUCOSE


INHIBITED DIVISION PROTEIN B] [SP:P25813] [DB:swissprot] >pir:[LN:BWBSGB]


[AC:I40441:S66024:H69631:JQ1217:S18077] [PN:glucose-inhibited division


protein gidB] [GN:gidB] [CL:gidB protein] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:d1005772:g467384] [LN:BAC180K] [AC:D26185] [PN:unknown] [GN:gidB]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:56866] [RE:57585] [DI:complement]


>gp:[GI:g40027] [LN:BSORIGS] [AC:X62539] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genes rpmH, rnpA, 50kd, gidA and gidB.]


[NT:homologous to E.coli gidB] [SP:P25813] [LE:5815] [RE:6534] [DI:direct]


>gp:[GI:e1184826:g2636647] [LN:BSUB0021] [AC:Z99124:AL009126]


[PN:glucose-inhibited division protein] [GN:gidB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P25813] [LE:208798] [RE:209517] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_36584652_c1_805
3176
6948
339
112
380
4.0e−35










Description


gp:[GI:d1045996:g5360820] [LN:D86934] [AC:D86934] [PN:transposase]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N026; putative] [LE:19527]


[RE:19751] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_37892_f1_217
3177
6949
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3906578_f1_8
3178
6950
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3913137_f2_262
3179
6951
570
189
982
6.5e−99










Description


gp:[GI:g459909] [LN:L29436] [AC:L29436:M15048:N00048] [OR:Plasmid pI258]


[SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 (from S.aureus


strain RN23 8325) mercury resistance(mer) operon encoding mercuric reductase


(merA), organomercuriallyase (merB), regulatory protein (merR) and membrane


transport protein (merT), complete cds.] [NT:ORF1] [LE:5718] [RE:6266]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3937713_c3_1215
3180
6952
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3938802_f2_326
3181
6953
1383
460
2306
3.2e−239










Description


gp:[GI:d1046000:g5360824] [LN:D86934] [AC:D86934] [PN:site-specific


recombinase] [GN:ccrA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:N315) DNA, clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus


aureus genes, mec region, partial and complete cds.] [NT:ORF N034; cassette


chromosome recombinase A] [LE:24137] [RE:25486] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_3954450_c3_1101
3182
6954
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4016887_f1_6
3183
6955
174
57
157
2.6e−10










Description


sp:[LN:CADA_LISMO] [AC:Q60048] [GN:CADA] [OR:LISTERIA MONOCYTOGENES]


[EC:3.6.1.-] [DE:ATPASE)] [SP:Q60048] [DB:swissprot] >gp:[GI:g495646)


[LN:LISCADTNP] [AC:L28104] [PN:ATPase] [GN:cadA] [FN:cadmium resistance]


[OR:Transposon Tn5422] [SR:Listeria monocytogenes (individual_isolate Lm74)


DNA; Transposo] [DB:genpept-una] [DE:Listeria monocytogenes ATPase (cadA)


gene; accessory protein (cadC)gene; resolvase (tnpR) gene and transposase


(tnpA) gene.] [LE:158] [RE:2293] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4022952_f1_64
3184
6956
1515
504
1186
3.9e−140










Description


pir:[LN:C70880] [AC:C70880] [PN:probable hsdM protein] [GN:hsdM]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:(GI:e1173886:g2624278]


[LN:MTV002] [AC:AL008967:AL123456] [PN:hsdM] [GN:hsdM] [OR:Mycobacterium


tuberculosis] [DB:genpept-bct1] [DE:Mycobacterium tuberculosis H37Rv


complete genome; segment 122/162.] [NT:Rv2756c, (MTV002.21c), len:540 aa.


hsdM, type I] [LE:19902] [RE:21524] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4025302_f3_464
3185
6957
1293
430
1892
2.4e−195










Description


sp:[LN:ARSB_STAAU] [AC:P30329] [GN:ARSB] [OR:STAPHYLOCOCCUS AUREUS]


[DE:ARSENICAL PUMP MEMBRANE PROTEIN] [SP:P30329] [DB:swissprot]


>pir:[LN:C41903] [AC:C41903] [PN:arsenical pump membrane protein] [GN:arsB]


[CL:arsenical pump membrane protein] [OR:Staphylococcus aureus] [DB:pir1]


>gp:[GI:g150728] [LN:PI2ARSRBC] [AC:M86824] [PN:arsenic efflux pump protein]


[GN:arsB] [FN:arsenic efflux pump component (membrane] [OR:Plasmid pI258]


[SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 arsenic


resistance operon (arsRBC) genes, complete cds.] [LE:587] [RE:1876]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4093937_c3_1172
3186
6958
192
63





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4098518_c2_1040
3187
6959
417
318
682
4.0e−67










Description


sp:[LN:MERR_STAAU] [AC:P22874] [GN:MERR] [OR:STAPHYLOCOCCUS AUREUS]


[DE:MERCURIC RESISTANCE OPERON REGULATORY PROTEIN] [SP:P22874]


[DB:swissprot] >pir:[LN:A29504] [AC:A29504] [PN:hypothetical 16K protein


(mer operon)] [CL:transcription repressor glnR] [OR:Staphylococcus aureus]


[DB:pir2] >gp:[GI:g459903] [LN:L29436] [AC:L29436:M15048:N00048] [OR:Plasmid


pI258] [SR:Plasmid pI258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 (from


S.aureus strain RN23 8325) mercury resistance(mer) operon encoding mercuric


reductase (merA), organomercuriallyase (merB), regulatory protein (merR) and


membrane transport protein (merT), complete cds.] [NT:ORF2] [LE:1030]


[RE:1437] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4120462_f2_235
3188
6960
945
314
791
1.1e−78










Description


sp:[LN:ARCL—ECOLI] [AC:Q46807] [GN:YQEA] [OR:ESCHERICHIA COLI] [DE:CARBAMATE


KINASE-LIKE PROTEIN 1] [SP:Q46807] [DB:swissprot] >pir:[LN:B65071]


[AC:B65071] [PN:hypothetical protein b2874] [CL:carbamate kinase]


[OR:Escherichia coli] [DB:pir2] >gp:[GI:g887824] [LN:ECU28375] [AC:U28375]


[OR:Escherichia coli] [DB:genpept-bct1] [DE:Escherichia coli K-12 genome;


approximately 64 to 65 minutes.] [NT:ORF_o310] [LE:21276] [RE:22208]


[DI:direct] >gp:[GI:g1789238] [LN:AE000370] [AC:AE000370:U00096]


[PN:putative kinase] [GN:yqeA] [FN:putative enzyme; Not classified]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 260 of 400 of the complete genome.] [NT:o310; This 310 aa ORF is 45


pct identical (21 gaps)] [LE:11360] [RE:12292] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_41265_c3_1170
3189
6961
1365
454
1593
1.2e−163










Description


pir:[LN:A42280] [AC:S65968:A42280:H69683] [PN:adenylosuccinate synthase,


purA:IMP--aspartate ligase] [GN:purA] [CL:adenylosuccinate synthase]


[OR:Bacillus subtilis] [EC:6.3.4.4] [DB:pir2] >gp:[GI:d1005716:g467328)


[LN:BAC180K] [AC:D26185] [PN:adenylosuccinate synthetase] [GN:purA]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (sub_species:Marburg,


strain:168) DNA] [DB:genpept-bct1] [DE:B. subtilis DNA, 180 kilobase region


of replication origin.] [LE:3429] [RE:4721] [DI:complement]


>gp:[GI:e1184768:g2636589] [LN:BSUB0021] [AC:Z99124:AL009126]


[PN:adenylosuccinate synthetase] [GN:purA] [FN:AMP biosynthesis]


[OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.4.4] [DE:Bacillus subtilis


complete genome (section 21 of 21): from 3999281 to 4214814.] [SP:P29726]


[LE:155361] [RE:156653] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4179680_c2_977
3190
6962
936
311
214
1.7e−16










Description


sp:[LN:YYBS_BACSU] [AC:P37485] [GN:YYBS] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 34.5 KD PROTEIN IN RPLI-COTF INTERGENIC REGION] [SP:P37485]


[DB:swissprot] >pir:[LN:S65977] [AC:S65977:F70088] [PN:hypothetical protein


yybS] [GN:yybS] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1005725:g467337]


[LN:BAC180K] [AC:D26185] [PN:unknown] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (sub_species:Marburg, strain:168) DNA] [DB:genpept-bct1] [DE:B.


subtilis DNA, 180 kilobase region of replication origin.] [LE:13655]


[RE:14584] [DI:complement] >gp:[GI:e1184778:g2636599] [LN:BSUB0021]


[AC:Z99124:AL009126] [GN:yybS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 21 of 21):


from 3999281 to 4214814.] [SP:P37485] [LE:165587] [RE:166516] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4196051_f1_29
3191
6963
333
110
424
8.7e−40










Description


pir:[LN:A41902] [AC:A41902] [PN:arsenical resistance operon repressor]


[GN:arsR] [CL:arsenical resistance operon repressor] [OR:Staphylococcus


xylosus] [DB:pir1]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_42162_c3_1124
3192
6964
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4305342_f2_445
3193
6965
1557
518
2015
2.2e−208










Description


sp:[LN:GUAA_BACSU] [AC:P29727:O34531] [GN:GUAA] [OR:BACILLUS SUBTILIS]


[EC:6.3.5.2] [DE:AMIDOTRANSFERASE] [GMP SYNTHETASE)] [SP:P29727:O34531]


[DB:swissprot] >pir:[LN:C69638] [AC:C69638:B42280] [PN:GMP synthase


(glutamine-hydrolyzing), guaA] [GN:guaA] [CL:GMP synthase


(glutamine-hydrolyzing):trpG homology] [OR:Bacillus subtilis] [EC:6.3.5.2]


[DB:pir2] >gp:[GI:g2239288] [LN:BSU51115] [AC:U51115] [PN:GMP synthetase]


[GN:guaA] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


CotA (cotA), GabP (gabP), YeaB (yeaB), YeaC(yeaC), YebA (yebA), GMP


synthetase (guaA) genes, complete cds, and AIR carboxylase I (purE) gene,


partial cds.] [LE:9970] [RE:11511] [DI:direct] >gp:[GI:e1182615:g2632949]


[LN:BSUB0004] [AC:Z99107:AL009126] [PN:GMP synthetase] [GN:guaA] [FN:GMP


biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:6.3.5.2]


[DE:Bacillus subtilis complete genome (section 4 of 21): from 600701


to 813890.] [NT:alternate gene name: guaB] [SP:P29727] [LE:91559] [RE:93100]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4335750_f1_166
3194
6966
600
199
158
2.0e−11










Description


pir[LN:I40868] [AC:I40868] [PN:hypothetical protein 3] [OR:Clostridium


perfringens] [DB:pir2] >gp:[GI:g853809] [LN:CPNANH] [AC:X87369]


[OR:Clostridium perfringens] [DB:genpept-bct1] [DE:C.perfringens nanH gene &


ORF1, 2, 3 & 4.] [NT:ORF3] [LE:4957] [RE:5754] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4453165_c1_862
3195
6967
537
178
202
1.8e−15










Description


gp:[GI:d1006123:g473790] [LN:ECO82K] [AC:D26562] [PN:'ORF'] [OR:Escherichia


coli] [SR:Escherichia coli (sub_strain W3110, strain K-12) (library:


Kohara′] [DB:genpept-bct1] [DE:Escherichia coli genome, 2.4–4.1 min region


(110, 917–193, 643 bp from 0 min).] [NT:'copper resistance protein copA


homology'] [LE:25693] [RE:27117] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_446062_c3_1126
3196
6968
159
52
231
2.5e−19










Description


pir:[LN:A60634] [AC:A60634:C30471:S26349] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46597] [LN:SAI52571]


[AC:X53952] [PN:transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S.aureus plasmid pSH6 DNA for insertion sequences IS257-1 and IS256.]


[LE:188] [RE:862] [DI:direct] >gp:[GI:g3676452] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative transposase TnpE] [GN:tnpE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [LE:40946] [RE:41620] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4475050_f2_341
3197
6969
162
53
68
0.045










Description


pir:[LN:F71007] [AC:F71007] [PN:hypothetical protein PH1356] [GN:PH1356]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031405:g3257779]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:111aa long hypothetical protein] [GN:PH1356] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus horikoshi]


[DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000


nt. position(6/7).] [LE:56557] [RE:56892] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4485937_f1_10
3198
6970
1044
347
1060
3.5e−107










Description


sp:[LN:OTCC_HAEIN] [AC:P44770] [GN:ARCB:HI0596] [OR:HAEMOPHILUS INFLUENZAE]


[EC:2.1.3.3] [DE:ORNITHINE CARBAMOYLTRANSFERASE, CATABOLIC, (OTCASE)]


[SP:P44770] [DB:swissprot] >pir:[LN:H64079] [AC:H64079] [PN:ornithine


carbamoyltransferase,] [CL:ornithine carbamoyltransferase:


aspartate/ornithine carbamoyltransferase homology] [OR:Haemophilus


influenzae] [EC:2.1.3.3] [DB:pir2] >gp:[GI:g1573585] [LN:U32741]


[AC:U32741:L42023] [PN:ornithine carbamoyltransferase (arcB)] [GN:HI0596]


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 56 of 163 of the complete genome.] [NT:similar to GB:X05637


SP:P08308 PID:45288 percent] [LE:3467] [RE:4471] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_448785_f3_518
3199
6971
927
308
408
4.3e−38










Description


sp:[LN:SOXR_ARTSP] [AC:Q44311] [GN:SOXR] [OR:ARTHROBACTER SP] [SR:TE1826,]


[DE:TRANSCRIPTIONAL REGULATOR SOXR] [SP:Q44311] [DB:swissprot]


>gp:[GI:d1026865:g3116220] [LN:AB007122] [AC:AB007122] [PN:negative


regulator] [OR:Arthrobacter sp.] [SR:Arthrobacter sp. (strain:TE1826) DNA]


[DB:genpept-bct1] [DE:Arthrobacter sp. gene for negative regulator,


sarcosine oxidase, transporter, creatinase, creatininase and


transporter, complete cds.] [LE:321] [RE:1190] [DI:complement]


>gp:[GI:d1010363:g1333651] [LN:ARGTE1826] [AC:D63413] [PN:regulator]


[GN:soxR] [OR:Arthrobacter sp.] [SR:Arthrobacter sp. (strain:TE1826) DNA]


[DB:genpept-bct1] [DE:Arthrobacter sp. gene for sarcosine oxidase, complete


cds.] [LE:1539] [RE:2408] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4694677_c1_832
3200
6972
324
107










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4697337_f3_519
3201
6972
549
182
255
7.1e−22










Description


pir:[LN:B69978] [AC:B69978] [PN:2-nitropropane dioxygenase homolog yrpB]


[GN:yrpB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1934639] [LN:BSU93875]


[AC:U93875] [PN:2-nitropropane dioxygenase] [GN:yrpB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis alcohol dehydrogenase (adhB) gene,


partial cds, hypothetical spore coat protein (yraF), hypothetical spore


coat protein (yraG), YraH (yraH), YraI (yraI), YraJ (yraJ), YraK (yraK), YraL


(yraL), chitosanase precursor (csn), YraM (yraM), LysR-family transcription


regulator (yraN), YraO (yraO), YrpG (yrpG), RNA polymerase sigma factor SigZ


(sigZ), YrpE (yrpE), YrpD (yrpD), YrpC (yrpC) and 2-nitropropane dioxygenase


(yrpB) genes, complete cds, and aminoglycoside 6-adenylyltransferase (aadK)


gene, partial cds.] [NT:similar to 2-nitropropane dioxigenase of Williopsis]


[LE:16473] [RE:17516] [DI:complement] >gp:[GI:e1183909:g2635125]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrpB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [NT:similar to 2-nitropropane


dioxygenase] [LE:136734] [RE:137777] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4714062_c1_759
3202
6974
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4722338_c3_1233
3203
6975
234
77
57
0.047










Description


gp:[GI:g1354131] [LN:EHU48386] [AC:U48386] [PN:pEhS4] [GN:EhS4]


[OR:Entamoeba histolytica] [DB:genpept-inv2] [DE:Entamoeba histolytica


putative serine/threonine protein kinase(EhS4) gene, complete cds.]


[NT:putative serine/threonine protein kinase] [LE:243:510] [RE:463:1791]


[DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4725385_f1_213
3204
6976
675
224
366
1.2e−33










Description


sp:[LN:YRHP_BACSU] [AC:O05406] [GN:YRHP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 23.4 KD PROTEIN IN AAPA-SIGV INTERGENIC REGION] [SP:O05406)


[DB:swissprot] >pir:[LN:F69975] [AC:F69975] [PN:dihydrodipicolinate


reductase homolog yrhP] [GN:yrhP] [CL:hypothetical protein b1798]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1183940:g2635156] [LN:BSUB0014]


[AC:Z99117:AL009126] [GN:yrhP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 14 of 21):


from 2599451 to 2812870.] [NT:similar to dihydrodipicolinate reductase]


[SP:O05406] [LE:167862] [RE:168494] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4726555_f2_234
3205
6977
474
157
203
2.3e−16










Description


gp:[GI:g4980875] [LN:AE001717] [AC:AE001717:AE000512] [PN:arginine


repressor] [GN:TM0371] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 29 of 136 of the complete genome.]


[NT:similar to GB:M27869 SP:P17893 PID:142450] [LE:2550] [RE:3008]


[DI:direct] >gp:[GI:e1489641:g5102818] [LN:TMA132286] [AC:AJ132286]


[PN:arginine repressor] [GN:argR] [FN:regulation of arginine biosynthesis


genes] [OR:Thermotoga maritima] [DB:genpept] [DE:Thermotoga maritima argR


gene, strain MSB8.] [LE:1] [RE:459] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4766933_f3_490
3206
6978
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4770028_c1_740
3207
6979
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_48412_f2_258
3208
6980
159
52
124
1.8e−07










Description


pir:[LN:H65154] [AC:H65154:S47779:S01252] [PN:probable transposase,


33.3K:hypothetical protein o283:probable transposase B] [GN:yi5B]


[OR:Escherichia coli] [DB:pir2] >gp:[GI:g1789981] [LN:AE000433]


[AC:AE000433:U00096] [PN:IS150 putative transposase] [GN:t150] [FN:IS,


phage, Tn; Transposon-related functions] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655 section 323 of 400 of the


complete genome.] [NT:o283; 99 pct identical amino acid sequence and]


[LE:1897] [RE:2748] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4866425_f2_315
3209
6981
465
154
305
3.6e−27










Description


pir:[LN:B69978] [AC:B69978] [PN:2-nitropropane dioxygenase homolog yrpB]


[GN:yrpB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1934639] [LN:BSU93875]


[AC:U93875] [PN:2-nitropropane dioxygenase] [GN:yrpB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis alcohol dehydrogenase (adhB) gene,


partial cds, hypothetical spore coat protein (yraF), hypothetical spore


coat protein (yraG), YraH (yraH), YraI (yraI), YraJ (yraJ), YraK (yraK), YraL


(yraL), chitosanase precursor (csn), YraM (yraM), LysR-family transcription


regulator (yraN), YraO (yraO), YrpG (yrpG), RNA polymerase sigma factor SigZ


(sigZ), YrpE (yrpE), YrpD (yrpD), YrpC (yrpC) and 2-nitropropane dioxygenase


(yrpB) genes, complete cds, and aminoglycoside 6-adenylyltransferase (aadK)


gene, partial cds.] [NT:similar to 2-nitropropane dioxigenase of Williopsis]


[LE:16473] [RE:17516] [DI:complement] >gp:(GI:e1183909:g2635125]


[LN:BSUB0014] [AC:Z99117:AL009126] [GN:yrpB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


14 of 21): from 2599451 to 2812870.] [NT:similar to 2-nitropropane


dioxygenase] [LE:136734] [RE:137777] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4867343_c3_1210
3210
6982
2739
912
234
6.2e−16










Description


pir:[LN:G70178] [AC:G70178] [PN:exodeoxyribonuclease V, alpha chain (recD)


homolog] [OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2]


>gp:[GI:g2688552] [LN:AE001164] [AC:AE001164:AE000783]


[PN:exodeoxyribonuclease V, alpha chain (recD)] [GN:BB0632] [OR:Borrelia


burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2] [DE:Borrelia


burgdorferi (section 50 of 70) of the complete genome.] [NT:similar to


SP:P04993 GB:X04581 GB:X04582 PID:42683] [LE:9371] [RE:11203]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4895250_f3_627
3211
6983
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_492086_f3_540
3212
6984
1824
607





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4957943_f3_655
3213
6985
600
199
205
7.3e−16










Description


sp:[LN:F26_CAEEL] [AC:Q21122] [GN:K02B2.1] [OR:CAENORHABDITIS ELEGANS]


[EC:2.7.1.105:3.1.3.46] [DE:BISPHOSPHATASE,] [SP:Q21122] [DB:swissprot]


>gp:[GI:g1118103] [LN:CELKO2B2] [AC:U41558] [GN:K02B2.1] [OR:Caenorhabditis


elegans] [DB:genpept-inv2] [DE:Caenorhabditis elegans cosmid K02B2.]


[NT:Contains similarity to Pfam domain:PF00300 (PGAM),]


[LE:5652:5766:6320:6579] [RE:5700:5991:6527:6830] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_4971051_c2_1028
3214
6986
825
274
196
1.3e−15










Description


gp:[GI:g1405404] [LN:LLU60336] [AC:U60336] [PN:AbiGi] [GN:abiGi] [FN:with


AbiGii, causes abortive infection of phage] [OR:Lactococcus lactis subsp.


cremoris] [DB:genpept-bct1] [DE:Lactococcus lactis cremoris abortive


infection proteins (abiGi and abiGii) genes, complete cds.] [LE:4376]


[RE:5125] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5133462_f3_538
3215
6987
1530
509
146
1.2e−06










Description


pir:[LN:G71620] [AC:G71620] [PN:hypothetical protein PFB0195c] [GN:PFB0195c]


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845121] [LN:AE001380]


[AC:AE001380:AE001362] [PN:hypothetical protein] [GN:PFB0195c]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 17 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:1011] [RE:3101]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5190938_c3_1167
3216
6988
471
156
77
0.031










Description


sp:[LN:YH37_HAEIN] [AC:P44301] [GN:HI1737] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI1737] [SP:P44301] [DB:swissprot] >pir:[LN:E64041]


[AC:E64041] [PN:branched-chain amino acid transport protein azlD homolog


HI1737] [CL:branched-chain amino acid transport protein azlD]


[OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g1574595] [LN:U32846]


[AC:U32846:L42023] [PN:conserved hypothetical protein] [GN:HI17371


[OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus influenzae


Rd section 161 of 163 of the complete genome.] [NT:similar to GB:AL009126


percent identity: 53.70;] [LE:9500] [RE:9829] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5275393_f1_18
3217
6989
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5292300_c2_1002
3218
6990
342
113
83
0.029










Description


pir:[LN:A71655] [AC:A71655] [PN:hypothetical protein RP5111] [GN:RP511]


[OR:Rickettsia prowazekii] [DB:pir2] >gp:[GI:e1342807:g3861063] [LN:RPXX03]


[AC:AJ235272:AJ235269] [PN:unknown] [GN:RP511] [OR:Rickettsia prowazekii]


[DB:genpept-bct1] [DE:Rickettsia prowazekii strain Madrid E, complete


genome; segment3/4.] [LE:35291] [RE:38143] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5313316_c2_936
3219
6991
1413
470
245
8.3e−38










Description


pir:[LN:S74046] [AC:S74046] [PN:probable sugar transport protein c0110]


[OR:Sulfolobus solfataricus] [DB:pir2] >gp:[GI:e283949:g1707740]


[LN:SS100KBFR] [AC:Y08256] [PN:sugar transporter] [GN:orf c01010]


[OR:Sulfolobus solfataricus] [DB:genpept-bct1] [DE:S. solfataricus 100 kbp


DNA fragment.] [LE:71310] [RE:72581] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_5367337_c3_1274
3220
6992
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_57217_c1_735
3221
6993
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_582777_c2_892
3222
6994
1476
491
1405
9.7e−144










Description


sp:[LN:YHCL_BACSU] [AC:P54596] [GN:YHCL] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 49.0 KD PROTEIN IN CSPB-GLPP INTERGENIC REGION] [SP:P54596]


[DB:swissprot] >pir:[LN:H69822] [AC:H69822] [PN:sodium-glutamate symporter


homolog yhcL] [GN:yhcL] [CL:Bacillus subtilis sodium-glutamate symporter


homolog yhcL] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e233874:g1239988]


[LN:BS75DGREG] [AC:X96983] [PN:hypothetical protein] [GN:yhcL] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis chromosomal DNA (region 75


degrees: cspB upstream of glpPFKD operon).] [NT:similarity to the


proton/sodium-glutamate symport] [SP:P54596] [LE:7868] [RE:9259] [DI:direct]


>gp:(GI:e1182902:g2633236] [LN:BSUB0005] [AC:Z99108:AL009126] [GN:yhcL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 5 of 21): from 802821 to 1011250.] [NT:similar to


sodium-glutamate symporter] [SP:P54596] [LE:183674] [RE:185065] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_595937_f2_394
3223
6995
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6016063_f3_662
3224
6996
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6054512_f3_600
3225
6997
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6095000_f2_425
3226
6998
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_649141_f2_330
3227
6999
567
188










Description


NO-HIT
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6521882_f1_32
3228
7000
195
64
81
0.0019










Description


gp:[GI:g5306165] [LN:AF160864] [AC:AF160864] [PN:orf98] [GN:orf98]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf71 (CPGN); ATT initiation] [LE:37598] [RE:37894]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6643751_c1_859
3229
7001
270
89





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6644537_f1_178
3230
7002
258
85





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6650267_f3_611
3231
7003
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6715_c3_1123
3232
7004
510
169





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6728178_f1_176
3233
7005
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6728578_c2_942
3234
7006
1893
630
678
1.1e−66










Description


pir:[LN:B70001] [AC:B70001] [PN:ABC transporter (permease) homolog ytsD]


[GN:ytsD] [OR:Bacillus subtilis] [DB:pir2] >gp:(GI:e1185910:g2635521]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytsD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21): from 2997771 to 3213410.] [NT:similar to ABC transporter


(permease)] [LE:110708] [RE:112648] [DI:complement] >gp:(GI:g2293178]


[LN:AF008220] [AC:AF008220] [PN:YtsD] [GN:ytsD] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to NADH dehydrogenase] [LE:67779] [RE:69719] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6819462_f1_9
3235
7007
1491
496
1508
1.2e−154










Description


gp:[GI:e1299584:g3687418] [LN:BLY17554] [AC:Y17554] [PN:permease] [GN:arcD]


[OR:Bacillus licheniformis] [DB:genpept-bct1] [DE:Bacillus licheniformis


arcA, arcB, arcC and arcD genes.] [LE:2579] [RE:3985] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6828125_c1_788
3236
7008
252
83
398
5.0e−37










Description


gp:[GI:d1046032:g5360856] [LN:D86934] [AC:D86934] [OR:Staphylococcus aureus]


[SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of N31]


[DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF CN040] [LE:47301] [RE:>47552] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6834501_c1_828
3237
7009
231
76





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6929627_c2_1064
3238
7010
1146
381
756
5.7e−75










Description


pir:[LN:F70903] [AC:F70903] [PN:probable adhE protein] [GN:adhE]


[CL:long-chain alcohol dehydrogenase homology] [OR:Mycobacterium


tuberculosis] [DB:pir2] >gp:[GI:e322878:g2213499] [LN:MTCI28]


[AC:Z97050:AL123456] [PN:adhE] [GN:adhE] [OR:Mycobacterium tuberculosis]


[DB:genpept-bct1] [DE:Mycobacterium tuberculosis H37Rv complete genome;


segment 10/162.] [NT:Rv0162c, (MTCI28.02c), len:383, adhE, alcohol]


[LE:1482] [RE:2633] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6929642_f1_14
3239
7011
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6929686_c1_1081
3240
7012
264
87
368
7.5e−34










Description


pir:[LN:A60634] [AC:A60634:C30471:S26349] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46597] [LN:SAIS52571]


[AC:X53952] [PN:transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus plasmid pSH6 DNA for insertion sequences IS257-1 and IS256.]


[LE:188] [RE:862] [DI:direct] >gp:[GI:g3676452] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative transposase TnpE] [GN:tnpE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [LE:40946] [RE:41620] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_6929686_f1_111
3241
7013
693
230
1195
1.7e−121










Description


sp:[LN:TRA2_STAAU] [AC:P19380] [OR:STAPHYLOCOCCUS AUREUS] [DE:TRANSPOSASE


FOR INSERTION SEQUENCE-LIKE ELEMENT IS431MEC] [SP:P19380] [DB:swissprot]


>pir:[LN:S12093] [AC:S12093:JU0116] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46602] [LN:SAIS431M]


[AC:X53818:M18438] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S.


aureus IS431mec gene associated with methicillin resistance.] [NT:putative


transposase (AA1–224)] [SP:P19380] [LE:272] [RE:946] [DI:direct]


>gp:[GI:e1237900:g2791991] [LN:SAMECAR1I] [AC:Y14051] [PN:putative


transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus mecA, mecR1, mecI genes and ORF168, ORF142, ORF44, ORF145 and ORF224.]


[NT:ORF224] [LE:8096] [RE:8770] [DI:direct] >gp:[GI:d1046034:g5360858]


[LN:D86934] [AC:D86934] [PN:transposase for insertion sequence-like element]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:N315) DNA,


clone_lib:library of N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec


region, partial and complete cds.] [NT:ORF N062] [LE:48054] [RE:48728]


[DI:direct] >gp:[GI:d1046044:g5360868] [LN:D86934] [AC:D86934]


[PN:transposase for insertion sequence-like element] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain:N315) DNA, clone_lib:library of


N31] [DB:genpept] [DE:Staphylococcus aureus genes, mec region, partial and


complete cds.] [NT:ORF N070] [LE:53400] [RE:54074] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_7031563_c1_763
3242
7014
243
80
358
8.6e−33










Description


pir:[LN:S54709] [AC:S54709] [PN:hypothetical protein 81] [OR:Staphylococcus


aureus] [DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_7223587_c3_1174
3243
7015
1401
466
218
4.9e−15










Description


gp:[GI:d1011960:g1064812] [LN:BACGNTZA] [AC:D78193] [GN:yycH] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis 36kb sequence between gntZ and trnY genes encoding 34


ORFs.] [LE:32039] [RE:33415] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_7297338_f1_190
3244
7016
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_791307_c3_1273
3245
7017
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_862927_c3_1289
3246
7018
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_87562_f3_550
3247
7019
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_892142_f2_249
3248
7020
198
65





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_898550_f3_629
3249
7021
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_917550_c1_869
3250
7022
216
71
143
5.2e−10










Description


gp:[GI:g929968] [LN:BAU30713] [AC:U30713] [OR:Bacillus anthracis]


[SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis Sterne toxin


plasmid pXO1 right inverted repeat element (SterneR) bordering the


toxin-encoding region, ORFA and truncated ORFB genes, complete cds.]


[NT:ORFA; similar to B. anthracis WeyAR element ORFA;] [LE:171] [RE:491]


[DI:direct] >gp:[GI:g929971] [LN:BAU30714] [AC:U30714] [OR:Bacillus


anthracis] [SR:plasmid pXO1] [DB:genpept-bct1] [DE:Bacillus anthracis


Weybridge A toxin plasmid pXO1 right inverted repeat element (WeyAR)


bordering the toxin-encoding region, ORFA and ORFB genes, complete cds.]


[NT:ORFA; similar to B. anthracis SterneR element ORFA;] [LE:171] [RE:491]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_969050_c2_1031
3251
7023
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_970077_c3_1098
3252
7024
135
44
52
0.040










Description


gp:[GI:e264333:g1050454] [LN:CHRFBFPGE] [AC:X91081] [GN:rfbP]


[OR:Campylobacter hyoilei] [DB:genpept-bct1] [DE:C.hyoilei rfbF and rfbP


genes.] [LE:1896] [RE:2498] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_970250_c2_1057
3253
7025
912
303
446
4.1e−42










Description


pir:[LN:E69219] [AC:E69219] [PN:conserved hypothetical protein MTH894]


[GN:MTH894] [OR:Methanobacterium thermoautotrophicum] [DB:pir2]


>gp:[GI:g2621989] [LN:AE000865] [AC:AE000865:AE000666] [PN:conserved


protein] [GN:MTH894] [OR:Methanobacterium thermoautotrophicum]


[DB:genpept-bct1] [DE:Methanobacterium thermoautotrophicum from bases 808939


to 820180 (section 71 of 148) of the complete genome.] [NT:Function


Code:14.01 - Unknown, Conserved protein;] [LE:4427] [RE:5410] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_970386_f1_60
3254
7026
333
110
270
5.2e−23










Description


pir:[LN:D70073] [AC:D70073] [PN:metabolite transport protein homolog yxcC]


[GN:yxcC] [CL:glucose transport protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184706:g2636527] [LN:BSUB0021] [AC:Z99124:AL009126] [GN:yxcC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 21 of 21): from 3999281 to 4214814.] [NT:similar to


metabolite transport protein] [LE:87516] [RE:88901] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9765951_c1_816
3255
7027
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9773385_c1_687
3256
7028
816
271
303
5.8e−27










Description


gp:[GI:g757830] [LN:EC4HPADNA] [AC:Z37980] [PN:2-oxo-hept-3-ene-1,7-dioate


hydratase] [GN:hpaH] [OR:Escherichia coli] [DB:genpept-bct1] [DE:E.coli


hpa[G, R, E, D, F, H, I, X, A, B, C] genes.] [LE:4957] [RE:5760] [DI:direct]


>gp:[GI:g2695682] [LN:AF036583] [AC:AF036583]


[PN:2-oxo-hept-4-ene-1,7-dioate hydratase] [GN:hpcG] [OR:Escherichia coli]


[DB:genpept-bct2] [DE:Escherichia coli 2-oxo-hept-4-ene-1,7-dioate hydratase


(hpcG) gene, complete cds.] [NT:OHED hydratase] [LE:1] [RE:804] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_979178_c3_1277
3257
7029
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9792842_c1_711
3258
7030
1851
616
1480
1.1e−151










Description


pir:[LN:C69840] [AC:C69840] [PN:conserved hypothetical protein yitJ]


[GN:yitJ] [OR:Bacillus subtilis] [DB:pir2] >gp:(GI:e1183103:g2633437]


[LN:BSUB0006] [AC:Z99109:AL009126] [GN:yitJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 6


of 21): from 999501 to 1209940.] [NT:similar to hypothetical proteins]


[LE:178731] [RE:180569] [DI:complement] >gp:[GI:e1173535:g2145402]


[LN:BSY09476] [AC:Y09476] [PN:YitJ] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis 54kb genomic DNA fragment.] [NT:putative - Some homology with


MetH2 (S. cerevisae)] [LE:35957] [RE:37795] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_980000_c3_1090
3259
7031
228
75





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9806332_f3_491
3260
7032
450
149
237
9.3e−20










Description


pir:[LN:A71175] [AC:A71175] [PN:probable dehydrogenase] [GN:PH0597]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030629:g3257003]


[LN:AP000002]


[AC:AP000002:AB009475:AB009476:AB009477:AB009478:AB009479:AB009480]


[PN:376aa long hypothetical dehydrogenase] [GN:PH0597] [OR:Pyrococcus


horikoshii] [SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1]


[DE:Pyrococcus horikoshii OT3 genomic DNA, 287001–544000 nt. position(2/7).]


[NT:similar to owl:BSZ9404317 percent identity: 49.821] [LE:248539]


[RE:249669] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9806692_c3_1251
3261
7033
1374
457
907
5.7e−91










Description


sp:[LN:YMER_STAAU] [AC:P08655] [OR:STAPHYLOCOCCUS AUREUS] [DE:HYPOTHETICAL


19.7 KD PROTEIN IN MERCURIC RESISTANCE OPERON] [SP:P08655] [DB:swissprot]


>pir:[LN:G29504] [AC:G29504] [PN:hypothetical 20K protein (mer regulatory


region)] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g459902] [LN:L29436]


[AC:L29436:M15048:N00048] [PN:regulatory protein] [GN:merR] [OR:Plasmid


pI258] [SR:Plasmid p1258 DNA] [DB:genpept-bct1] [DE:Plasmid pI258 (from


S. aureus strain RN23 8325) mercury resistance(mer) operon encoding mercuric


reductase (merA), organomercuriallyase (merB), regulatory protein (merR) and


membrane transport protein (merT), complete cds.] [LE:188] [RE:730]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_9847811_c1_698
3262
7034
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503000999_991500_f1_182
3263
7035
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_11955055_c1_45
3264
7036
192
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_1214635_c2_48
3265
7037
387
128
469
1.5e−44










Description


gp:[GI:d1036080:g4001724] [LN:AB015981] [AC:AB015981] [PN:OrfA] [GN:orfA]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:302] [RE:685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_13089052_c2_46
3266
7038
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_1378550_f3_34
3267
7039
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_14460932_f2_21
3268
7040
294
97
451
1.2e−42










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_14500036_c3_66
3269
7041
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_15041078_f2_13
3270
7042
279
92
319
1.2e−28










Description


pir:[LN:G70012] [AC:G70012] [PN:conserved hypothetical protein yuiF]


[GN:yuiF] [CL:conserved integral membrane protein HP0758] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184283:g2635701] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yuiF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to hypothetical proteins] [LE:96999]


[RE:98327] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_21646015_f3_36
3271
7043
201
66
198
7.8e−16










Description


gp:[GI:g1022725] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF2] [LE:394] [RE:1083] [DI:complement] >gp:[GI:g295162] [LN:STAMECRA]


[AC:L14017] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


COL) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus methicillin-resistance


protein (mecR) gene and unknown ORF, complete cds.] [NT:unknown ORF1;


putative] [LE:1492] [RE:2181] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_22136087_c2_53
3272
7044
1512
503
2102
1.3e−217










Description


gp:[GI:d1036084:g4001728] [LN:AB015981] [AC:AB015981] [PN:MnhD] [GN:mnhD]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:3976] [RE:5472]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_22457312_f1_9
3273
7045
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_23456932_f3_26
3274
7046
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_23859843_f1_10
3275
7047
393
130
212
2.5e−17










Description


sp:[LN:GS13_BACSU] [AC:P80870:O05238] [GN:YUGI] [OR:BACILLUS SUBTILIS]


[DE:GENERAL STRESS PROTEIN 13 (GSP13)] [SP:P80870:O05238] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_23947132_f3_23
3276
7048
378
125
269
2.3e−23










Description


gp:[GI:e291128:g1834379] [LN:BLCOMAB] [AC:Y10551] [GN:ComAB] [FN:positive


activator of lichenysin synthetase] [OR:Bacillus licheniformis]


[DB:genpept-bct1] [DE:B. licheniformis comAB gene.] [LE:617] [RE:>963]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_24644702_c1_41
3277
7049
435
144
647
2.0e−63










Description


gp:[GI:d1036082:g4001726] [LN:AB015981] [AC:AB015981] [PN:MnhB] [GN:mnhB]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:3214] [RE:3642]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_26756252_c3_61
3278
7050
2427
808
3318
0.0










Description


gp:[GI:d1036081:g4001725] [LN:AB015981] [AC:AB015981] [PN:MnhA] [GN:mnhA]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:816] [RE:3221]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_29742890_f2_22
3279
7051
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_32689812_c2_54
3280
7052
312
103
386
9.3e−36










Description


gp:[GI:d1036086:g4001730] [LN:AB015981] [AC:AB015981] [PN:MnhF] [GN:mnhF]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:5953] [RE:6246]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_33397338_c3_64
3281
7053
492
163
635
3.8e−62










Description


gp:[GI:d1036085:g4001729] [LN:AB015981] [AC:AB015981] [PN:MnhE] [GN:mnhE]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:5474] [RE:5953]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_34384380_c1_42
3282
7054
333
110
468
1.9e−44










Description


gp:[GI:d1036083:g4001727] [LN:AB015981] [AC:AB015981] [PN:MnhC] [GN:mnhC]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:3642] [RE:3983]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_34617286_f2_19
3283
7055
612
203
304
3.9e−35










Description


sp:[LN:YDJ3_SCHPO] [AC:P87051] [GN:SPAC57A10.03] [OR:SCHIZOSACCHAROMYCES


POMBE] [SR:,FISSION YEAST] [EC:5.2.1.8] [DE:PROBABLE PEPTIDYL-PROLYL


CIS-TRANS ISOMERASE C57A10.03,] [SP:P87051] [DB:swissprot]


>gp:[GI:e313994:g2058370] [LN:SPAC57A10] [AC:Z94864] [PN:peptidyl-prolyl


cis-trans isomerase] [GN:SPAC57A10.03] [OR:Schizosaccharomyces pombe]


[SR:fission yeast] [DB:genpept-pln1] [DE:S. pombe chromosome I cosmid


c57A10.] [NT:SPAC57A10.03, len:155, SIMILARITY:Caenorhabditis] [SP:P87051]


[LE:5344:5414:5521:5779] [RE:5373:5455:5574:5858] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_36604587_c1_44
3284
7056
1173
390





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_4017050_c3_59
3285
7057
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_5114680_c3_65
3286
7058
363
120
463
6.4e−44










Description


gp:[GI:d1036087:g4001731] [LN:AB015981] [AC:AB015981] [PN:MnhG] [GN:mnhG]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:6224] [RE:6580]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_6672886_f3_35
3287
7059
1173
390
914
1.0e−91










Description


sp:[LN:YQIG_BACSU] [AC:P54524] [GN:YQIG] [OR:BACILLUS SUBTILIS] [EC:1.-.-.-]


[DE:PROBABLE NADH-DEPENDENT FLAVIN OXIDOREDUCTASE YQIG,] [SP:P54524]


[DB:swissprot] >pir:[LN:C69961] [AC:C69961] [PN:NADH-dependent flavin


oxidoreductase homolog yqiG] [GN:yqiG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1013261:g1303926] [LN:BACJH642] [AC:D84432:D82370] [PN:YqiG]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:JH642(trpC2 PheA1))


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNA, 283 Kb region containing


skin element.] [LE:202096] [RE:203214] [DI:complement]


>gp:[GI:e1185689:g2634855] [LN:BSUB0013] [AC:Z99116:AL009126] [GN:yqiG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 13 of 21): from 2395261 to 2613730.] [NT:similar to


NADH-dependent flavin oxidoreductase] [SP:P54524] [LE:120407] [RE:121525]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001000_783125_c3_56
3288
7060
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10000312_c3_1340
3289
7061
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10006340_f2_492
3290
7062
501
166
85
0.0011










Description


gp:[GI:g160616] [LN:PFAR45B] [AC:M83791] [PN:trophozoite antigen] [GN:R45]


[OR:Plasmodium falciparum] [SR:Plasmodium falciparum (strain Tak 9.96)


(library:lambda-gt11] [DB:genpept-inv1] [DE:Plasmodium falciparum


trophozoite antigen gene (repeat region), partial cds.] [LE:<1] [RE:>327]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10265677_f2_556
3291
7063
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10267016_c2_1133
3292
7064
789
262
210
4.1e−17










Description


sp:[LN:TIPA_STRLI] [AC:P32184] [GN:TIPA] [OR:STREPTOMYCES LIVIDANS]


[DE:TRANSCRIPTIONAL ACTIVATOR TIPA] [SP:P32184] [DB:swissprot]


>pir:[LN:S35354] [AC:S35354:A45923] [PN:tipA protein] [GN:tipA] [CL:tipA


protein] [OR:Streptomyces lividans] [DB:pir2] >gp:[GI:g408223] [LN:S64314]


[AC:S64314] [PN:TipAL–AS] [GN:tipA] [OR:Streptomyces lividans]


[DB:genpept-bct1] [DE:tipAL–AS complex:tipA=TipAL–AS [Streptomyces


lividans, Genomic, 1146 nt].] [NT:thiostrepton-specific recognition protein;


Method:] [LE:120] [RE:881] [DI:direct] >gp:[GI:e1453008:g4808352] [LN:SCE9]


[AC:AL049841] [PN:transcriptional regulator] [GN:SCE9.20] [OR:Streptomyces


coelicolor] [DB:genpept-bct1] [DE:Streptomyces coelicolor cosmid E9.]


[NT:SCE9.20c, tipA, transcriptional regulator, len:253] [LE:21108]


[RE:21869] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10268818_f3_803
3293
7065
234
77





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10343756_f3_840
3294
7066
174
57


Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10439005_f1_44
3295
7067
516
171
157
1.7e−11










Description


gp:[GI:d1044366:g5105267] [LN:AP000062] [AC:AP000062] [PN:114aa long


hypothetical protein] [GN:APE1580] [OR:Aeropyrum pernix] [SR:Aeropyrum


pernix (strain:K1) DNA] [DB:genpept] [DE:Aeropyrum pernix genomic DNA,


section 5/7.] [NT:similar to OWL:AB00946832 percent identity:37.500]


[LE:13911] [RE:14255] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI75030010001_10548187_f3_766
3296
7068
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10581693_f2_490
3297
7069
684
227
842
4.4e−84










Description


pir:[LN:A69868] [AC:A69868] [PN:ykvJ protein] [GN:ykvJ] [CL:conserved


hypothetical protein HI1191] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184962:g2633743] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21): from 1394791 to 1603020.] [NT:similar to


hypothetical proteins] [LE:44124] [RE:44783] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10589818_f2_358
3298
7070
201
66
58
0.0051










Description


gp:[GI:e321942:g2664263] [LN:EFAS48C] [AC:Y12234] [PN:hypothetical protein]


[OR:Enterococcus faecalis] [DB:genpept-bct1] [DE:E. faecalis plasmid DNA


containing gene cluster involved in production and immunity to peptide


antibiotic AS-48.] [NT:ORF6] [LE:4556] [RE:5065] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10667002_c3_1423
3299
7071
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10667002_c3_1504
3300
7072
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10737818_f1_230
3301
7073
471
156
233
1.7e−18










Description


sp:[LN:YP17_LISMO] [AC:P52309] [OR:LISTERIA MONOCYTOGENES] [DE:HYPOTHETICAL


17.1 KD PROTEIN IN DNAG/DNAE 5′REGION (P17)] [SP:P52309] [DB:swissprot]


>gp:[GI:g664754] [LN:LMU13165] [AC:U13165] [PN:P17] [OR:Listeria


monocytogenes] [DB:genpept-bct2] [DE:Listeria monocytogenes P17 (orfP17),


DNA primase (dnaG) and sigma43 subunit of RNA polymerase (rpoD) genes,


complete cds.] [NT:orfP17] [LE:196] [RE:645] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_10976387_c3_1503
3302
7074
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_11023402_f3_781
3303
7075
273
90
127
2.6e−08










Description


pir:[LN:A71007] [AC:A71007] [PN:hypothetical protein PH1351] [GN:PH1351]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031400:g3257774]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:101aa long hypothetical protein] [GN:PH1351] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus horikoshi]


[DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA, 1166001–1485000


nt. position(6/7).] [LE:50986] [RE:51291] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_110275_f2_577
3304
7076
276
91
292
8.5e−26










Description


gp:[GI:e255528:g1617429] [LN:SEABCTS] [AC:X99127] [PN:membrane protein]


[FN:iron repressible ABC transport system] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis gene encoding ABC transport system.]


[LE:878] [RE:1624] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_11152176_c1_967
3305
7077
1029
342
1111
1.4e−112










Description


pir:[LN:A69855] [AC:A69855] [PN:low-affinity inorganic phosphate transport


homolog ykaB] [GN:ykaB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1181485:g2632005] [LN:BSAJ2571] [AC:AJ002571] [PN:YkaB] [GN:ykaB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA


fragment between xlyA and ykoR.] [NT:homologous to low affinity phosphate


transporter] [LE:1614] [RE:2600] [DI:complement] >gp:[GI:e1183304:g2633638]


[LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykaB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7


of 21): from 1194391 to 1411140.] [NT:similar to low-affinity inorganic


phosphate] [LE:154563] [RE:155549] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_112561_f1_99
3306
7078
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_116383_f2_590
3307
7079
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_11728376_c2_1327
3308
7080
249
82
241
2.2e−20










Description


pir:[LN:A70026] [AC:A70026] [PN:hypothetical protein yuzB] [GN:yuzB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184298:g2635716] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yuzB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:110425] [RE:110661] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_11831433_f2_602
3309
7081
159
52
48
0.031










Description


gp:[GI:g554799] [LN:HIVB54CH] [AC:M96497] [PN:envelope protein] [GN:env]


[OR:Human immunodeficiency virus type 1] [SR:Human immunodeficiency virus


type 1 (individual_isolate) RNA] [DB:genpept-vr1] [DE:Human


immunodeficiency virus type 1 (clone B5-4) V1 & V2 regions of the envelope


protein (env) gene, partial cds.] [NT:hypervariable regions V1 and V2;


putative] [LE:<1] [RE:>296] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_11883557_f1_292
3310
7082
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1199063_f1_135
3311
7083
510
169
165
5.3e−12










Description


sp:[LN:YJJP_HAEIN] [AC:P44520] [GN:HI0108] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI0108] [SP:P44520] [DB:swissprot] >pir:[LN:I64142]


[AC:I64142] [PN:hypothetical protein HI0108] [OR:Haemophilus influenzae]


[DB:pir2] >gp:[GI:g1573061] [LN:U32696] [AC:U32696:L42023] [PN:conserved


hypothetical protein] [GN:HI0108] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 11 of 163 of the


complete genome.] [NT:similar to GB:U14003 SP:P39402 PID:537207 GB:U00096]


[LE:4095] [RE:4988] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1214688_f1_146
3312
7084
939
312
526
1.4e−50










Description


sp:[LN:MURB_BACSU] [AC:P18579:P16669:P37581] [GN:MURB] [OR:BACILLUS


SUBTILIS] [EC:1.1.1.158] [DE:ACETYLMURAMATE DEHYDROGENASE)]


[SP:P18579:P16669:P37581] [DB:swissprot] >pir:[LN:A43727]


[AC:S26500:PC1128:A43727:B69662] [PN:UDP-N-acetylenolpyruvoylglucosamine


reductase murB:hypothetical protein (murG 3′ region)] [GN:murB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g142833] [LN:BACDDSA] [AC:M31827]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (clone:lambda-BS1) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis (clone lambda-BS1) cell division and


sporulation protein (dds) gene, complete cds.] [NT:ORF2] [LE:479] [RE:1390]


[DI:direct] >gp:(GI:e1185113:g2633894] [LN:BSUB0008] [AC:Z99111:AL009126]


[PN:UDP-N-acetylenolpyruvoylglucosamine reductase] [GN:murB]


[FN:peptidoglycan biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:1.1.1.158] [DE:Bacillus subtilis complete genome (section 8 of 21): from


1394791 to 1603020.] [NT:alternate gene name: ylxC] [SP:P18579] [LE:197268]


[RE:198179] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_12616018_f2_357
3313
7085
270
89
84
0.0027










Description


gp:[GI:g48992] [LN:ECINCI2] [AC:X62169:S47694] [GN:pilU] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:E.coli IncI2 plasmid R721 pilU, plV, shf, rci


genes.] [LE:29] [RE:664] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_12617827_c1_1083
3314
7086
762
253
1160
8.9e−118










Description


gp:[GI:e1393156:g4490615] [LN:SAU133520] [AC:AJ133520] [PN:triosephosphate


isomerase] [GN:tpi] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus gap operon (gapR, gap, pgk and tpi genes).]


[LE:4307] [RE:5068] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_12789077_c3_1469
3315
7087
1107
368
1311
8.9e−134










Description


sp:[LN:UVRA_BACSU] [AC:O34863] [GN:UVRA] [OR:BACILLUS SUBTILIS]


[DE:EXCINUCLEASE ABC SUBUNIT A] [SP:O34863] [DB:swissprot] >pir:[LN:F69729]


[AC:F69729] [PN:excinuclease ABC chain A:excision endonuclease ABC,, chain


A:uvrA protein] [GN:uvrA] [CL:excinuclease ABC chain A:ATP-binding cassette


homology] [OR:Bacillus subtilis] [EC:3.1.-.-] [DB:pir2]


>gp:[GI:e1184422:g2636042] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:excinuclease ABC (subunit A)] [GN:uvrA] [FN:excision of ultraviolet


light-induced] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091 to 3809700.]


[SP:O34863] [LE:12034] [RE:14907] [DI:complement] >gp:[GI:g2618842]


[LN:AF017113] [AC:AF017113] [PN:excinuclease ABC subunit A] [GN:uvrA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 300–304


degree genomic sequence.] [LE:15386] [RE:18259] [DI:direct]


>gp:[GI:e1184422:g2636042] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:excinuclease ABC (subunit A)] [GN:uvrA] [FN:excision of ultraviolet


light-induced] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21): from 3597091 to 3809700.] [SP:O34863]


[LE:12034] [RE:14907] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_12929631_f2_529
3316
7088
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_12948336_c3_1475
3317
7089
273
90
316
2.4e−28










Description


sp:[LN:CLPP_BACSU] [AC:P80244:O08433] [GN:CLPP] [OR:BACILLUS SUBTILIS]


[EC:3.4.21.92] [DE:(ENDOPEPTIDASE CLP) (CASEINOLYTIC PROTEASE) (PROTEASE


TI)] [SP:P80244:O08433] [DB:swissprot] >pir:[LN:B69601] [AC:B69601:A47683]


[PN:ATP-dependent clp proteinase, chain P:stress protein G7] [GN:clpP]


[CL:ATP-dependent Clp proteinase chain P] [OR:Bacillus subtilis]


[EC:3.4.21.-] [DB:pir2] >gp:[GI:e1186142:g2635967] [LN:BSUB0018]


[AC:Z99121:AL009126] [PN:ATP-dependent Clp protease proteolytic subunit]


[GN:clpP] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.4.21.92]


[DE:Bacillus subtilis complete genome (section 18 of 21): from 3399551 to


3609060.] [NT:alternate gene name:yvdN] [SP:P80244] [LE:145744] [RE:146337]


[DI:direct] >gp:[GI:e313044:g1945673] [LN:BSZ94043] [AC:Z94043]


[PN:hypothetical protein] [GN:yvdN] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment (88 kb).] [NT:similar to CLPP—ECOLI


ATP-dependent clp protease] [SP:P80244] [LE:35334] [RE:35927]


[DI:complement] >gp:[GI:g2668494] [LN:BSU59754] [AC:U59754] [PN:ClpP]


[GN:clpP] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis Clp


protease proteolytic component (clpP) gene, complete cds.] [NT:proteolytic


component of Clp protease] [LE:140] [RE:733] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1351533_c2_1261
3318
7090
2571
856
3966
0.0










Description


sp:[LN:SECA_STAAU] [AC:O06446] [GN:SECA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:PREPROTEIN TRANSLOCASE SECA SUBUNIT] [SP:O06446] [DB:swissprot]


>gp:[GI:g2078390] [LN:SAU97062] [AC:U97062] [PN:SecA] [GN:secA]


[FN:secretion] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus NCTC 8325 SecA (secA) gene, complete cds.]


[LE:440] [RE:2971] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1362705_c1_960
3319
7091
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1366018_f3_723
3320
7092
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13710887_c2_1298
3321
7093
753
250
315
3.1e−28










Description


pir[LN:I39522] [AC:I39522] [PN:3-dehydroquinate dehydratase,, catabolic]


[GN:quiB] [CL:3-dehydroquinate dehydratase:3-dehydroquinate dehydratase


homology] [OR:Acinetobacter calcoaceticus] [EC:4.2.1.10] [DB:pir2]


>gp:(GI:g3172120] [LN:ACCPCAOP]


[AC:L05770:U04359:M33798:U20284:U11554:L13114:L03407] [PN:catabolic


dehydroquinate dehydratase] [GN:quiB] [FN:dehydration of dehydroquinate to]


[OR:Acinetobacter sp. ADP1] [DB:genpept-bct2] [DE:Acinetobacter sp. ADP1


pca-qui-pob supraoperonic cluster, complete sequence.] [LE:10923] [RE:11795]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13714193_c3_1456
3322
7094
582
193
583
1.2e−56










Description


sp:[LN:YSEA_STACA] [AC:P47995] [OR:STAPHYLOCOCCUS CARNOSUS] [DE:HYPOTHETICAL


PROTEIN IN SECA 5′REGION (ORF1) (FRAGMENT)] [SP:P47995] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13727318_f1_246
3323
7095
813
270
348
9.9e−32










Description


gp:[GI:g2735506] [LN:SCU96107] [AC:U96107] [PN:SceB precursor] [GN:sceB]


[OR:Staphylococcus carnosus] [DB:genpept-bct2] [DE:Staphylococcus carnosus


N5,N10-methylenetetrahydromethanopterinreductase homolog, SceB precursor


(sceB) and putative transmembrane protein genes, complete cds, and putative


Na+/H+ antiporter NhaC(nhaC) gene, partial cds.] [NT:major secreted protein]


[LE:1894] [RE:2685] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1376577_f2_374
3324
7096
675
224
77
0.0044










Description


pir:[LN:F70141] [AC:F70141] [PN:probable oligopeptide transport ATP-binding


protein oppF] [GN:oppF] [CL:inner membrane protein malK:ATP-binding


cassette homology] [OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete]


[DB:pir2] >gp:[GI:g2688242] [LN:AE001140] [AC:AE001140:AE000783]


[PN:oligopeptide ABC transporter, ATP-binding] [GN:BB0335] [OR:Borrelia


burgdorferi] [SR:Lyme disease spirochete] [DB:genpept-bct2] [DE:Borrelia


burgdorferi (section 26 of 70) of the complete genome.] [NT:similar to


SP:P24137 percent identity: 56.81;] [LE:3216] [RE:4187] [DI:direct]


>gp:[GI:g2281463] [LN:AF000366] [AC:AF000366] [PN:oligopeptide permease


homolog F] [GN:oppF] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi oligopeptide permease homologs AI


(oppAI), AII(oppAII), AIII (oppAIII), B (oppB), C (oppC), D (oppD), and


F(oppF), P26 (p26) and enolase homolog (eno) genes, complete cds.] [NT:OppF]


[LE:9017] [RE:9988] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13803167_f2_373
3325
7097
552
183
157
8.0e−11










Description


pir:[LN:A69774] [AC:A69774] [PN:integrase homolog ydcL] [GN:ydcL]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1020071:g1881291] [LN:AB001488]


[AC:AB001488] [GN:ydcL] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence,


148 kb sequence of the region between 35 and 47 degree.] [NT:PROBABLE


INTEGRASE.] [LE:62741] [RE:63847] [DI:complement] >gp:[GI:e1182446:g2632780]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydcL] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21): from 402751 to 611850.] [NT:similar to integrase] [LE:126486]


[RE:127592] [DI :complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13834425_c2_1291
3326
7098
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13921942_c3_1483
3327
7099
1554
517
1690
6.1e−174










Description


pir:[LN:D69675] [AC:D69675:I40024] [PN:phosphoglycerate mutase,, 2,


3-diphosphoglycerate-independent] [GN:pgm] [CL:phosphoglycerate mutase, 2,


3-bisphosphoglycerate-independent] [OR:Bacillus subtilis] [EC:5.4.2.1]


[DB:pir2] >gp:[GI:e1186079:g2635904] [LN:BSUB0018] [AC:Z99121:AL009126]


[PN:phosphoglycerate mutase] [GN:pgm] [FN:glycolysis] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:5.4.2.1] [DE:Bacillus subtilis complete genome


(section 18 of 21): from 3399551 to 3609060.] [SP:P39773] [LE:77390]


[RE:78925] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_13931527_c3_1337
3328
7100
723
240
87
0.011










Description


pir:[LN:S49604] [AC:S49604] [PN:hypothetical protein 126 (rps12 3′ region)]


[OR:plastid Astasia longa] [DB:pir2] >gp:[GI:e156256:g1334340] [LN:ALRPS12]


[AC:X82630] [GN:orf126] [OR:Chloroplast Astasia longa] [SR:euglenophycean


alga] [DB:genpept-pln1] [DE:A. longa plastid rps12, orf126 and orf288 genes.]


[NT:ata start] [LE:<1424] [RE:1801] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1408438_f1_283
3329
7101
948
315
110
8.1e−06










Description


sp:[LN:YDCZ_ECOLI] [AC:P76111] [GN:YDCZ] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 15.9 KD PROTEIN IN TEHB-ANSP INTERGENIC REGION] [SP:P76111]


[DB:swissprot] >pir:[LN:B64897] [AC:B64897] [PN:probable membrane protein


b1447] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g1787718] [LN:AE000241]


[AC:AE000241:U00096] [PN:orf, hypothetical protein] [GN:b1447] [FN:orf;


Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12


MG1655 section 131 of 400 of the complete genome.] [NT:f149; This 149 aa ORF


is 31 pct identical (11 gaps)] [LE:9124] [RE:9573] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14097163_f1_50
3330
7102
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14120465_f1_56
3331
7103
513
170





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14454632_f1_194
3332
7104
177
58
225
1.1e−18










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14460882_c1_1104
3333
7105
177
58
234
1.2e−19










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14460882_f3_776
3334
7106
183
60
128
6.0e−08










Description


gp:[GI:g1022726] [LN:SHU35635] [AC:U35635] [PN:unknown] [OR:Staphylococcus


haemolyticus] [SR:Staphylococcus haemolyticus strain=Y176] [DB:genpept-bct1]


[DE:Staphylococcus haemolyticus IS1272 ORF1 and ORF2 genes, complete cds.]


[NT:ORF1] [LE:1101] [RE:1922] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14478377_c3_1383
3335
7107
1149
382
637
2.3e−62










Description


sp:[LN:HMPA_BACSU] [AC:P49852] [GN:HMP:ANE3] [OR:BACILLUS SUBTILIS]


[DE:FLAVOHEMOPROTEIN (HAEMOGLOBIN-LIKE PROTEIN] [FLAVOHEMOGLOBIN)]


[SP:P49852] [DB:swissprot] >pir:[LN:B69642] [AC:B69642] [PN:flavohemoglobin


hmp] [GN:hmp] [CL:flavohemoglobin:cytochrome-b5 reductase homology:globin


homology] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1011920:g1063247]


[LN:BAC168TRP2] [AC:D781891 [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis hmp DNA for 7


ORFs, complete cds.] [NT:high homology to flavohemoprotein


(Haemoglobin-like] [LE:999] [RE:2198] [DI:direct] >gp:[GI:e1181505:g2632025]


[LN:BSAJ2571] [AC:AJ002571] [PN:YkiA] [GN:ykiA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment between xlyA


and ykoR.] [NT:Flavohemoprotein] [SP:P49852] [LE:24916] [RE:26115]


[DI:direct] >gp:[GI:e1183324:g2633658] [LN:BSUB0007] [AC:Z99110:AL009126]


[PN:flavohemoglobin] [GN:hmp] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 7 of 21): from 1194391 to


1411140.] [NT:alternate gene name:ykiA] [SP:P49852] [LE:177865] [RE:179064]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14494461_c2_1178
3336
7108
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14500052_f1_64
3337
7109
204
67





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14538202_c3_1510
3338
7110
762
253
1034
2.0e−104










Description


sp:[LN:V296_BACSU] [AC:P80866] [GN:YURI] [OR:BACILLUS SUBTILIS]


[DE:VEGETATIVE PROTEIN 296 (VEG296)] [SP:P80866] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14564005_f2_456
3339
7111
249
82
87
0.0016










Description


pir:[LN:B69341] [AC:B69341] [PN:cobalt transport protein (cbiQ-1) homolog]


[OR:Archaeoglobus fulgidus] [DB:pir2] >gp:[GI:g2649885] [LN:AE001054]


[AC:AE001054:AE000782] [PN:cobalt transport protein (cbiQ-1)] [GN:AF0730]


[OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus fulgidus


section 53 of 172 of the complete genome.] [NT:similar to GP:1419077 percent


identity:32.61;] [LE:978] [RE:1700] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14642203_c3_1363
3340
7112
834
277
772
1.2e−76










Description


pir:[LN:G70080] [AC:G70080] [PN:conserved hypothetical protein yxkD]


[GN:yxkD] [CL:conserved hypothetical protein yitT] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1186383:g2636419] [LN:BSUB0020] [AC:Z99123:AL009126]


[GN:yxkD] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 20 of 21): from 3798401 to 4010550.]


[NT:similar to hypothetical proteins] [LE:188319] [RE:189155]


[DI:complement] >gp:[GI:d1012387:g1783243] [LN:D83026] [AC:D83026:D45911]


[GN:yxkD] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1)


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome sequence covering


lic-cel region.] [NT:homologous to jojC gene product (B. subtilis;]


[LE:35310] [RE:36146] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14648452_c3_1464
3341
7113
801
266
346
1.6e−31










Description


gp:[GI:e244971:g1340128] [LN:SA1234] [AC:X97985] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S.aureus orfs 1, 2, 3 & 4.] [NT:ORF1] [LE:537] [RE:1304]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14875890_c3_1412
3342
7114
846
281
734
1.2e−72










Description


gp:[GI:e1359127:g4007669] [LN:SC4B5] [AC:AL034443] [PN:putative


oxidoreductase] [GN:SC4B5.01c] [OR:Streptomyces coelicolor]


[DB:genpept-bct1] [DE:Streptomyces coelicolor cosmid 4B5.] [NT:SC4B5.01c,


probable oxidoreductase, len; 277aa,] [LE:52] [RE:885] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14878807_f2_599
3343
7115
960
162
2.8e−09










Description


gp:[GI:e321943:g2664264] [LN:EFAS48C] [AC:Y12234] [PN:hypothetical protein]


[OR:Enterococcus faecalis] [DB:genpept-bct1] [DE:E. faecalis plasmid DNA


containing gene cluster involved in production and immunity to peptide


antibiotic AS-48.] [NT:ORF7] [LE:5043] [RE:6266] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14886052_c3_1386
3344
7116
495
164
307
2.2e−27










Description


sp:[LN:YQGC_BACSU] [AC:P54486] [GN:YQGC] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 17.3 KD PROTEIN IN CCCA-SODA INTERGENIC REGION] [SP:P54486]


[DB:swissprot] >pir:[LN:G69955] [AC:G69955] [PN:hypothetical protein yqgC]


[GN:yqgC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:d1013185:g1303850]


[LN:BACJH642] [AC:D84432:D82370] [PN:YqgC] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:JH642(trpC2 PheA1)) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, 283 Kb region containing skin element.]


[LE:132903] [RE:133385] [DI:direct] >gp:[GI:e1185770:g2634936] [LN:BSUB0013]


[AC:Z99116:AL009126] [GN:yqgC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [SP:P54486] [LE:190236] [RE:190718] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_14970251_f3_623
3345
7117
294
97





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15057762_c2_1198
3346
7118
1575
524
1194
2.2e−121










Description


sp:[LN:MEMP_ALCEU] [AC:Q07252] [OR:ALCALIGENES EUTROPHUS] [DE:MEMBRANE


PROTEIN] [SP:Q07252] [DB:swissprot] >pir:[LN:I39534] [AC:I39534:S33452]


[PN:hypothetical protein] [OR:Alcaligenes eutrophus] [DB:pir2]


>gp:[GI:g311309] [LN:AELACDEH] [AC:Z22737] [PN:putative membrane-bound


protein with four times] [OR:Ralstonia eutropha] [DB:genpept-bct1]


[DE:A. eutrophus genes for lactate dehydrogenase, putative membrane-bound


protein with four times repitition of Pro-Ser-Ala at the N-terminus (function


unknown) and transglycosidase (partial).] [SP:Q07252] [LE:962] [RE:2503]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_1561_c1_1025
3347
7119
1944
647
1406
7.6e−144










Description


pir:[LN:A69814] [AC:A69814] [PN:ABC transporter (ATP-binding protein)


homolog yfmR] [GN:yfmR] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1182716:g2633050] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yfmR] [FN:unknown] [OR:Bacillus subtilis]


(DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:similar to ABC transporter (ATP-binding protein)]


[LE:208365] [RE:210254] [DI:direct] >gp:[GI:e1182727:g2633061] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yfmR] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:6245] [RE:8134] [DI:direct] >gp:[GI:d1020922:g2116756]


[LN:D86418] [AC:D86418] [PN:YfmR] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic


DNA 69–70 degree region, partial sequence.] [LE:2937] [RE:4826]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15661088_c2_1162
3348
7120
513
170





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15751312_f1_164
3349
7121
2136
711
1980
1.1e−204










Description


sp:[LN:ADH2_ENTHI] [AC:Q24803:Q27649] [GN:ADH2] [OR:ENTAMOEBA HISTOLYTICA]


[EC:1.1.1.1:1.2.1.10] [DE:DEHYDROGENASE, (ACDH)] [SP:Q24803:Q27649]


[DB:swissprot] >gp:[GI:g488430] [LN:EHU04863] [AC:U04863] [PN:alcohol


dehydrogenase 2] [OR:Entamoeba histolytica] [DB:genpept-inv1] [DE Entamoeba


histolytica HM1:IMSS alcohol dehydrogenase 2 (EhADH2)mRNA, complete cds.]


[NT:The derived amino acid sequence of EhADH2 is] [LE:3] [RE:2615]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15752262_f3_666
3350
7122
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15756542_c2_1195
3351
7123
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_157767_c3_1366
3352
7124
1077
358
534
1.9e−51










Description


gp:[GI:d1045428:g5106360] [LN:AB028629] [AC:AB028629] [PN:lipase] [GN:lipA]


[OR:Clostridium perfringens] [SR:Clostridium perfringens (strain:13) DNA,


clone:pSB235] [DB:genpept] [DE:Clostridium perfringens metB, cysK, ygaG,


lipA genes for cystathionine beta-synthase, cysteine synthase,


hypothetical protein, lipase, partial and complete cds.] [NT:esterase]


[LE:3248] [RE:4183] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_15781336_c2_1131
3353
7125
471
156
150
9.5e−11










Description


pir:[LN:C70059] [AC:C70059] [PN:hypothetical protein ywiB] [GN:ywiB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186235:g2636271] [LN:BSUB0020]


[AC:Z99123:AL009126] [GN:ywiB] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 20 of 21):


from 3798401 to 4010550.] [LE:35970] [RE:36398] [DI:complement]


>gp:[GI:e324352:g2224755] [LN:BSZ97024] [AC:Z97024] [GN:ywiB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis ywiA, sbo, ywiB, argS and


narK genes.] [LE:1255] [RE:1683] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_16522890_f1_189
3354
7126
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_16603207_f3_710
3355
7127
378
125
217
7.5e−18










Description


pir:[LN:S72776] [AC:S72776] [PN:B1496_F1_41 protein] [OR:Mycobacterium


leprae] [DB:pir2] >gp:[GI:g466873] [LN:U00013] [AC:U00013] [PN:B1496_F1_41]


[OR:Mycobacterium leprae] [DB:genpept-bct1] [DE:Mycobacterium leprae cosmid


B1496.] [LE:29815] [RE:30312] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_166062_c2_1287
3356
7128
123
40
50
0.030










Description


pir:[LN:573871] [AC:S73871] [PN:type I restriction enzyme ecokI specificity


protein homolog:hypothetical protein H10_orf145L:hypothetical protein


H10_orf145L] [OR:Mycoplasma pneumoniae] [SR:ATCC 29342, , ATCC 29342]


[SR:ATCC 29342,] [DB:pir2] >gp:[GI:g1674242] [LN:MPAE000053]


[AC:AE000053:U00089] [GN:H10_orf145L] [OR:Mycoplasma pneumoniae]


[DB:genpept-bct2] [DE:Mycoplasma pneumoniae section 53 of 63 of the complete


genome.] [NT:type I restriction enzyme ecokI specificity protein] [LE:3554]


[RE:3991] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_166713_c2_1263
3357
7129
2001
666
2697
1.2e−280










Description


sp:[LN:UVRB_BACSU] [AC:P37954:O34455] [GN:UVRB:DINA:UVR] [OR:BACILLUS


SUBTILIS] [DE:EXCINUCLEASE ABC SUBUNIT B (DINA PROTEIN)] [SP:P37954:O34455]


[DB:swissprot] >pir:(LN:G69729] [AC:G69729:I39817:B37317] [PN:excinuclease


ABC chain B:DNA repair protein DinA:excision endonuclease ABC,, chain


B:hypothetical protein (DNA damage-inducible A76 promoter 3′ region):UrvB


homolog DinA] [GN:uvrB:uvr:dinA] [CL:excinuclease ABC chain B:DEAD/H box


helicase homology] [OR:Bacillus subtilis] [EC:3.1.-.-] [DB:pir2]


>gp:[GI:e1184423:g2636043] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:excinuclease ABC (subunit B)] [GN:uvrB] [FN:excision of ultraviolet


light-induced] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21): from 3597091 to 3809700.]


[NT:alternate gene name: dinA, uvrA] [SP:P37954] [LE:14915] [RE:16900]


[DI:complement] >gp:[GI:g2618841] [LN:AF017113] [AC:AF017113]


[PN:excinuclease ABC subunit B] [GN:uvrB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis 300–304 degree genomic sequence.]


[LE:13393] [RE:15378] [DI:direct] >gp:[GI:e1184423:g2636043] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:excinuclease ABC (subunit B)] [GN:uvrB]


[FN:excision of ultraviolet light-induced] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [NT:alternate gene name:dinA, uvrA] [SP:P37954]


[LE:14915] [RE:16900] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_16677343_c1_925
3358
7130
447
148
107
3.4e−06










Description


sp:[LN:Y357_METJA] [AC:Q57803] [GN:MJ0357] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0357] [SP:Q57803] [DB:swissprot] >pir:[LN:E64344]


[AC:E64344] [PN:hypothetical protein MJ0357] [OR:Methanococcus jannaschii]


[DB:pir2] [MP:REV326407–325940] >gp:[GI:g1591066] [LN:U67489]


[AC:U67489:L77117] [PN:M. jannaschii predicted coding region MJ0357]


[GN:MJ0357] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 31 of 150 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:1632] [RE:2099]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_16834512_c3_1401
3359
7131
1380
459
661
6.7e−65










Description


sp:[LN:PHR_BACFI] [AC:Q04449] [GN:PHR] [OR:BACILLUS FIRMUS] [EC:4.1.99.3]


[DE:(PHOTOREACTIVATING ENZYME] [FRAGMENT)] [SP:Q04449] [DB:swissprot]


>gp:[GI:g142783] [LN:BACCTA] [AC:M94110] [PN:DNA photolyase] [GN:phr]


[OR:Bacillus firmus] [SR:Bacillus firmus (strain OF4) DNA] [DB:genpept-bct1]


[EC:4.1.99.3] [DE:Bacillus firmus DNA photolyase (phr) gene, 3′ end, and


cytochromeoxidase (cta) operon.] [NT:putative] [LE:1] [RE:1020] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_16850303_c1_1090
3360
7132
477
158
510
6.7e−49










Description


sp:[LN:SMPB_BACSU] [AC:O32230] [GN:SMPB] [OR:BACILLUS SUBTILIS] [DE:SMALL


PROTEIN B HOMOLOG] [SP:O32230] [DB:swissprot] >pir:[LN:F70027] [AC:F70027]


[PN:conserved hypothetical protein yvaI] [GN:yvaI] [CL:small protein smpB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186048:g2635873] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvaI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to hypothetical proteins] [SP:O32230]


[LE:50760] [RE:51230] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_17011562_c3_1354
3361
7133
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_181500_c3_1353
3362
7134
798
265
415
7.8e−39










Description


sp:[LN:TAGA_BACSU] [AC:P27620] [GN:TAGA] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID BIOSYNTHESIS PROTEIN A] [SP:P27620] [DB:swissprot] >pir:[LN:B49757]


[AC:B49757:B69720] [PN:polyglycerol phosphate techoic acid biosynthesis


protein tagA] [GN:tagA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g143724]


[LN:BACTAGABCD] [AC:M57497] [GN:tagA] [OR:Bacillus subtilis] [SR:B. subtilis


(strain 168) DNA] [DB:genpept-bct1] [DE:B. subtilis tagA, tagB, tagC and tagD


genes, complete cds.] [NT:putative] [LE:800] [RE:1570] [DI:direct]


>gp:[GI:e1184481:g2636101] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:tagA]


[FN:polyglycerol phosphate assembly and export] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [SP:P27620] [LE:83340] [RE:84110] [DI:direct]


>gp:[GI:e1184481:g2636101] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:tagA]


[FN:polyglycerol phosphate assembly and export] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [SP:P27620] [LE:83340] [RE:84110] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_187568_c2_1149
3363
7135
327
108
178
1.0e−13










Description


pir:[LN:F70008] [AC:F70008] [PN:hypothetical protein yufC] [GN:yufC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184242:g2635660] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yufC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:53800] [RE:54084] [DI:direct]


>gp:[GI:e311513:g1934775] [LN:BSZ93932] [AC:Z93932] [PN:unknown] [GN:yufC]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment


from yufA to yufE.] [LE:7444] [RE:7728] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_187916_c2_1189
3364
7136
612
203
344
2.6e−31










Description


gp:[GI:e1314177:g3395518] [LN:PMAJ84] [AC:AJ000084] [PN:putative acetyl


transferase] [GN:pat] [OR:Proteus mirabilis] [DB:genpept-bct1] [DE:Proteus


mirabilis ccm and pat genes and partial ygbA gene.] [LE:949] [RE:1506]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_189187_c1_1040
3365
7137
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19532277_c1_1120
3366
7138
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19537812_c2_1293
3367
7139
150
49
39
0.0042










Description


pir:[LN:A70221] [AC:A70221] [PN:conserved hypothetical protein BBC08]


[OR:Borrelia burgdorferi] [SR:, Lyme disease spirochete] [DB:pir2]


>gp:[GI:g2689920] [LN:AE000791] [AC:AE000791] [PN:conserved hypothetical


protein] [GN:BBC08] [OR:Borrelia burgdorferi] [SR:Lyme disease spirochete]


[DB:genpept-bct2] [DE:Borrelia burgdorferi plasmid cp9, complete plasmid


sequence.] [NT:similar to GB:U03641 PID:458212 percent identity:] [LE:5534]


[RE:5980] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19547783_f2_493
3368
7140
771
256
448
2.5e−42










Description


gp:[GI:g4481749] [LN:AF007865] [AC:AF007865] [PN:BacR] [GN:bacR]


[OR:Bacillus licheniformis] [DB:genpept-bct2] [DE:Bacillus licheniformis


bacitracin synthetase operon, complete sequence; BacS (bacS), BcrA (bcrA),


BcrB (bcrB), and BcrC (bcrC) genes, complete cds.] [NT:44488] [LE:44497]


[RE:45213] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_195885_f2_436
3369
7141
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19589187_f3_689
3370
7142
207
68
57
0.019










Description


pir:[LN:F71027] [AC:F71027] [PN:hypothetical protein PH1514] [GN:PH1514]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031565:g3257939]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:310aa long hypothetical protein] [GN:PH1514] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus horikoshi]


[DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA, 1166001–1485000


nt. position(6/7).] [LE:183119] [RE:184051] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19696951_c3_1486
3371
7143
183
60
193
2.6e−15










Description


pir:[LN:A70028] [AC:A70028] [PN:hypothetical protein yvaL] [GN:yvaL]


[CL:protein-export protein secG] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186051:g2635876] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvaL]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21): from 3399551 to 3609060.] [LE:54605]


[RE:54835] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19704062_f2_528
3372
7144
183
60





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_197127_c3_1411
3373
7145
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19714012_c1_939
3374
7146
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_197152_c3_1343
3375
7147
348
115
257
4.3e−22










Description


gp:[GI:d1036083:g4001727] [LN:AB015981] [AC:AB015981] [PN:MnhC] [GN:mnhC]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:3642] [RE:3983]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19726575_c1_942
3376
7148
155
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19765965_c1_1098
3377
7149
249
82
323
4.4e−29










Description


gp:[GI:g2226349] [LN:AF003593] [AC:AF003593] [PN:CspC] [GN:cspC]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus CspC


(cspC) gene, complete cds.] [NT:similar to major cold-shock protein]


[LE:444] [RE:644] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19766886_f1_59
3378
7150
435
144
167
1.9e−12










Description


gp:[GI:e1294701:g3171734] [LN:BTPGI2XX] [AC:X13481] [OR:Bacillus


thuringiensis] [DB:genpept-bct1] [DE:Bacillus thuringiensis plasmid pGI2


with transposon Tn4430.] [NT:ORF 2] [LE:6037] [RE:6849] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19804502_f2_364
3379
7151
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19814387_c1_966
3380
7152
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_19929556_f2_545
3381
7153
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2007677_f2_513
3382
7154
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2007767_c2_1199
3383
7155
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20110186_f3_688
3384
7156
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20322153_c2_1212
3385
7157
219
72





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20350875_c3_1515
3386
7158
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20485663_f2_563
3387
7159
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20491385_f1_252
3388
7160
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20604832_f3_692
3389
7161
558
185
106
0.012










Description


gp:[GI:g552163] [LN:PFA10B] [AC:J03986] [OR:Plasmodium falciparum]


[SR:P. falciparum (strain IMTM22) asexual erythrocytic form DNA, clon]


[DB:genpept-inv1] [DE:P. falciparum 10b antigen gene, partial cds.] [NT:10b


antigen] [LE:<1] [RE:>1124] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20707877_c3_1457
3390
7162
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20734387_f3_640
3391
7163
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20830417_c3_1332
3392
7164
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20893828_c1_974
3393
7165
219
72





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_20900017_c2_1239
3394
7166
2169
722
3396
0.0










Description


gp:[GI:e1393150:g4490609] [LN:SAU133495] [AC:AJ133495] [PN:ribonucelotide


reductase major subunit] [GN:rir1] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus ribonucleotide reductase


operon.] [LE:4481] [RE:2604] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_209452_f1_276
3395
7167
648
215
754
9.4e−75










Description


gp:[GI:e255528:g1617429] [LN:SEABCTS] [AC:X99127] [PN:membrane protein]


[FN:iron repressible ABC transport system] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis gene encoding ABC transport system.]


[LE:878] [RE:1624] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_209627_c3_1444
3396
7168
1032
343
1571
2.5e−161










Description


gp:[GI:e1393151:g4490610] [LN:SAU133495] [AC:AJ133495] [PN:ribonucleotide


reductase minor subunit] [GN:rir2] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus ribonucleotide reductase


operon.] [LE:2722] [RE:3693] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21490925_c1_1005
3397
7169
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21509430_c1_962
3398
7170
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21525061_c1_1016
3399
7171
681
226
110
0.00014










Description


sp:[LN:YB69_HAEIN] [AC:P44118] [GN:HI1169] [OR:HAEMOPHILUS INFLUENZAE]


[DE:HYPOTHETICAL PROTEIN HI1169] [SP:P44118] [DB:swissprot] >pir:[LN:A64021]


[AC:A64021] [PN:hypothetical protein HI1169] [OR:Haemophilus influenzae]


[DB:pir2] >gp:[GI:g1574096] [LN:U32797] [AC:U32797:L42023] [PN:H. influenzae


predicted coding region HI1169] [GN:HI1169] [OR:Haemophilus influenzae Rd]


[DB:genpept-bct2] [DE:Haemophilus influenzae Rd section 112 of 163 of the


complete genome.] [NT:hypothetical protein; identified by GeneMark;] [LE:511]


[RE:1077] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21537811_c1_1007
3400
7172
1137
378
925
7.1e−93










Description


sp:[LN:CSBB_BACSU] [AC:Q45539] [GN:CSBB] [OR:BACILLUS SUBTILIS] [DE:CSBB


PROTEIN] [SP:Q45539] [DB:swissprot] >pir:[LN:JC5173] [AC:JC5173:G69607]


[PN:stress response protein csbB] [GN:csbB] [CL:stress response protein


csbB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g1387979] [LN:BACCSBB]


[AC:L77099] [GN:csbB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis csbB gene, complete cds.] [NT:similar to hypothetical protein from


Synechocystis] [LE:310] [RE:1299] [DI:direct] >gp:[GI:e1182849:g2633183]


[LN:BSUB0005] [AC:Z99108:AL009126] [PN:stress response protein] [GN:csbB]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 5 of 21): from 802821 to 1011250.] [NT:alternate gene name:


yfhN] [SP:Q45539] [LE:127505] [RE:128494] [DI:direct]


>gp:[GI:d1025396:g2804544] [LN:D85082] [AC:D85082] [PN:YfhN] [OR:Bacillus


subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, genome sequence, 79 to 81 degree region.] [LE:20396] [RE:21385]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21617215_f1_36
3401
7173
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21726510_f2_612
3402
7174
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21751287_f3_684
3403
7175
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21883512_c3_1512
3404
7176
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21897308_f2_541
3405
7177
261
86





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_21963877_c2_1273
3406
7178
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22265936_c3_1452
3407
7179
1128
375
1557
7.6e−160










Description


pir:[LN:A55856] [AC:A55856] [PN:11m protein] [GN:11m] [CL:lipophilic


protein lim] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:d1023388:g4433370]


[LN:STASRM551A] [AC:D21131] [PN:lipophilic protein which affects bacterial


lysis] [GN:11m] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(strain:SRM551) DNA, clone_lib:lambda ZapII] [DB:genpept-bct1]


[DE:Staphylococcus aureus gene for a participant in homogeneous expression of


high-level methicillin resistance, complete cds.] [LE:148] [RE:1203]


[DI direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22381693_c3_1472
3408
7180
852
283
1187
1.2e−120










Description


sp:[LN:LGT_STAAU] [AC:P52282] [GN:LGT] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.4.99.-] [DE:PROLIPOPROTEIN DIACYLGLYCERYL TRANSFERASE,] [SP:P52282]


[DB:swissprot] >gp:[GI:g1016770] [LN:SAU35773] [AC:U35773]


[PN:prolipoprotein diacylglyceryl transferase] [GN:lgt] [FN:transfer of


diglyceride moiety to SH Group of] [OR:Staphylococcus aureus]


[DB genpept-bct1] [DE:Staphylococcus aureus prolipoprotein diacylglyceryl


transferase(lgt) gene, complete cds.] [LE:297] [RE:1136] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22391068_c1_1046
3409
7181
1056
351
1284
6.4e−131










Description


gp:[GI:e1330455:g3724158] [LN:SAA005352] [AC:AJ005352] [PN:lipoprotein]


[GN:sstD] [FN:iron transporter] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus, Sst putative iron transport operon.] [LE:3066]


[RE:4095] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22446053_c2_1132
3410
7182
726
241
335
2.4e−30










Description


pir[LN:A64479] [AC:A64479] [PN:DNA-(apurinic or apyrimidinic site)


lyase,:endonuclease III] [CL:Methanococcus jannaschii conserved


DNA-(apurinic or apyrimidinic site) lyase] [OR:Methanococcus jannaschii]


[EC:4.2.99.18] [DB:pir2] [MP:F0R1403656–1404318] >gp:[GI:g1592082]


[LN:U67584] [AC:U67584:L77117] [PN:endonuclease III, putative (nth2)]


[GN:MJ1434] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 126 of 150 of the complete genome.]


[NT:similar to GB:U11289 SP:P39788 PID:533099] [LE:7078] [RE:7740]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22462926_c1_1122
3411
7183
783
260
669
9.5e−66










Description


pir:[LN:H70023] [AC:H70023] [PN:N-acetyl-glucosamine catabolism homolog


yutF] [GN:yutF] [CL:nagD protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184308:g2635726] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yutF]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21): from 3197001 to 3414420.] [NT:similar to


N-acetyl-glucosamine catabolism] [LE:120087] [RE:120857] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22687900_c3_1369
3412
7184
681
226
685
1.9e−67










Description


pir:[LN:G70000] [AC:G70000] [PN:two-component response regulator [YtsB]


homolog ytsA] [GN:ytsA] [CL:ompR protein:response regulator homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185913:g2635524] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytsA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to two-component response regulator


[YtsB] [LE:114498] [RE:115193] [DI:complement] >gp:[GI:g2293175]


[LN:AF008220] [AC:AF008220] [PN:signal transduction regulator] [GN:ytsA)


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB


genomic region.] [LE:65234] [RE:65929] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22776938_c2_1323
3413
7185
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_22895400_f3_753
3414
7186
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23427750_c1_938
3415
7187
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23438461_c1_926
3416
7188
687
228
103
0.029










Description


gp:[GI:g5306158] [LN:AF160864] [AC:AF160864] [PN:orf1386] [GN:orf1386]


[OR:Mitochondrion Tetrahymena pyriformis] [SR:Tetrahymena pyriformis]


[DB:genpept] [DE:Tetrahymena pyriformis mitochondrial DNA, complete genome.]


[NT:Open reading frame ymf77 (CPGN); ATA initiation] [LE:22317] [RE:26477]


[DI complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23439005_f1_6
3417
7189
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23429061_c1_984
3418
7190
531
176
258
3.4e−22










Description


pir:[LN:F69927] [AC:F69927] [PN:hypothetical protein yosT] [GN:yosT]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185472:g2634393] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yosT] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [LE:157797] [RE:158246] [DI:complement]


>gp:[GI:g3025644] [LN:AF020713] [AC:AF020713] [PN:unknown] [GN:yosT]


[OR:Bacteriophage SPBc2] [DB:genpept-phg] [DE:Bacteriophage SPBc2 complete


genome.] [LE:127274] [RE:127723] [DI:direct] >gp:[GI:g2522410] [LN:AF012906]


[AC:AF012906:U80600] [PN:unknown] [GN:yojV] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis yojP gene, partial cds; yojQ/S,


yojR, yojT, yojU, yojV, yojW, yojX, yojY, yojZ, and yokA genes, complete


cds.] [LE:4921] [RE:5370] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23444838_c2_1267
3419
7191
264
87
373
2.2e−34










Description


gp:[GI:e1387399:g4379428] [LN:SAAJ3781] [AC:AJ223781] [PN:thioredoxin


reductase] [GN:trxB] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[EC:1.6.4.5] [DE:Staphylococcus aureus trxB gene.] [LE:1262] [RE:2197]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23445175_f3_674
3420
7192
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23445890_c2_1177
3421
7193
492
163
333
3.8e−30










Description


pir:[LN:S74709] [AC:S74709] [PN:hypothetical protein s111188]


[OR:Synechocystis sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1017593:g1651934] [LN:D90901] [AC:D90901:AB001339] [PN:hypothetical


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 3/27,


271600–402289.] [NT:ORF_ID:s111188] [LE:42106] [RE:42600] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23446912_f2_597
3422
7194
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2345062_f3_639
3423
7195
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23450_c3_1490
3424
7196
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23469552_c1_923
3425
7197
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23475892_c1_1121
3426
7198
1362
453
707
9.0e−70










Description


pir:[LN:G70015] [AC:G70015] [PN:conserved hypothetical protein yunD]


[GN:yunD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184316:g2635734]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yunD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21): from 3197001 to 3414420.] [NT:similar to hypothetical proteins]


[LE:125728] [RE:127116] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23476517_c2_1259
3427
7199
1296
431
638
1.8e−62










Description


sp:[LN:CMF1_BACSU] [AC:P39145] [GN:COMFA:COMF1] [OR:BACILLUS SUBTILIS]


[DE:COMF OPERON PROTEIN 1] [SP:P39145] [DB:swissprot] >pir:[LN:G69602)


[AC:G69602:S77620:S35011:I40387:S28597] [PN:late competence protein


required for DNA uptake comFA:ATP-dependent DNA helicase/translocase comF1]


[GN:comFA:comF1] [CL:DEAD/H box helicase homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g580841] [LN:BSCOMFG] [AC:Z18629] [PN:F1] [GN:comForf1]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis comF gene.]


[SP:P39145] [LE:952] [RE:2343] [DI:direct] >gp:[GI:e1184453:g2636073]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:late competence protein] [GN:comFA]


[FN:required for DNA uptake (competence)] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [SP:P39145] [LE:44137] [RE:45528] [DI:complement]


>gp:[GI:g1762332] [LN:BSU56901] [AC:U56901] [GN:comFA] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis putative transcriptional


regulator (yvhJ), Ycr59c/YigZ homolog (yvhK), histidine kinase


(degS), transcriptional regulator of degradation enzyme (degU), (degV),


(comFA), (comFB), (comFC), flagellar protein (yviB), negative regulator of


flagellin(flgM), flagellar protein (yviC), flagellar-hook associated


protein1 (flgK), flagellar-hook associated protein 3 (flgL),


(yviE), transmembrane protein (yviF), (csrA), flagellin (hag),


flagellar protein (yviH), flagellar hook-associated protein 2


(fliD), flagellar protein (fliS), flagellar protein (fliT), sigma-54modulator


homolog (yviI), and (secA) genes, complete cds.] [NT:involved in


transformation] [LE:5065] [RE:6456] [DI:direct] >gp:[GI:e1184453:g2636073]


[LN:BSUB0019] [AC:Z99122:AL009126] [PN:late competence protein] [GN:comFA]


[FN:required for DNA uptake (competence)] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21): from


3597091 to 3809700.] [SP:P39145] [LE:44137] [RE:45528] [DI:complement]



























ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23492127_f2_368
3428
7200
453
150





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23494051_f2_444
3429
7201
1101
366
336
1.8e−30







Description


sp:[LN:YHCK_BACSU] [AC:P54595] [GN:YHCK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 40.7 KD PROTEIN IN CSPB-GLPP INTERGENIC REGION] [SP:P54595]


[DB:swissprot] >pir:[LN:G69822] [AC:G69822] [PN:conserved hypothetical


protein yhcK] [GN:yhcK] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e233892:g1239987] [LN:BS75DGREG] [AC:X96983] [PN:hypothetical


protein] [GN:yhcK] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


chromosomal DNA (region 75 degrees:cspB upstream of glpPFKD operon).]


[NT:similarity to hypothetical proteins from] [SP:P54595] [LE:6616]


[RE:7695] [DI:complement] >gp:[GI:e1182901:g2633235] [LN:BSUB0005]


[AC:Z99108:AL009126] [GN:yhcK] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5 of 21):


from 802821 to 1011250.] [NT:similar to hypothetical proteins] [SP:P54595]


[LE:182422] [RE:183501] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_235042_c1_1064
3430
7202
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2352140_f3_902
3431
7203
156
51





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23523326_c3_1385
3432
7204
1242
413
416
6.1e−39










Description


sp:[LN:YICK_ECOLI] [AC:P31436] [GN:YICK] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 43.5 KD PROTEIN IN SELC-NLPA INTERGENIC REGION] [SP:P31436]


[DB:swissprot] >pir:[LN:D65167] [AC:D65167] [PN:probable membrane protein


yicK] [GN:yicK] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g290508]


[LN:ECOUW82] [AC:L10328] [GN:o394] [FN:unknown] [OR:Escherichia coli]


[SR:Escherichia coli K12 strain MG1655; lambda clones EC14–52]


[DB:genpept-bct1] [DE:E. coli; the region from 81.5 to 84.5 minutes.]


[NT:similar to unidentified ORF near 47 minutes] [LE:26345] [RE:27529]


[DI:direct] >gp:[GI:g1790091] [LN:AE000443] [AC:AE000443:U00096]


[PN:two-module transport protein] [GN:yicK] [FN:putative transport; Not


classified] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 333 of 400 of the complete genome.] [NT:o394; 100 pct


identical to YICK_ECOLI SW:] [LE:8286] [RE:9470] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23572177_c3_1482
3433
7205
1194
397
1792
9.5e−185










Description


gp:[GI:e1393155:g4490614] [LN:SAU133520] [AC:AJ133520] [PN:phosphoglycerate


kinase] [GN:pgk] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus gap operon (gapR, gap, pgk and tpi genes).]


[LE:2995] [RE:4185] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23600175_f2_616
3434
7206
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23617338_f1_66
3435
7207
528
175
215
1.2e−24










Description


sp:[LN:YAGU_ECOLI] [AC:P77262] [GN:YAGU] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 23.0 KD PROTEIN IN INTF-EAEH INTERGENIC REGION] [SP:P77262]


[DB:swissprot] >pir:[LN:G64754] [AC:G64754] [PN:probable membrane protein


yagU] [GN:yagU] [OR:Escherichia coli] [DB:pir2] >gp:[GI:g1657488]


[LN:ECU73857] [AC:U73857] [OR:Escherichia coli] [DB:genpept-bct1]


[DE:Escherichia coli chromosome minutes 6–8.] [NT:hypothetical protein]


[LE:10789] [RE:11403] [DI:direct] >gp:[GI:g1786481] [LN:AE000136]


[AC:AE000136:U00096] [PN:orf, hypothetical protein] [GN:yagU] [FN:orf;


Unknown] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12


MG1655 section 26 of 400 of the complete genome.] [NT:o204; 26 pct identical


to 46 residues of approx.] [LE:7372] [RE:7986] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23621010_c1_971
3436
7208
843
280
167
1.5e−10










Description


pir:[LN:E69777] [AC:E69777] [PN:transcription regulator AraC/XylS family


homolog ydeC] [GN:ydeC] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020103:g1881323] [LN:AB001488] [AC:AB001488] [GN:ydeC]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:PROBABLE HTH_ARAC_FAMILY OF


TRANSCRIPTIONAL] [LE:94733] [RE:95608] [DI:complement]


>gp:[GI:e1182481:g2632815] [LN:BSUB0003] [AC:Z99106:AL009126] [GN:ydeC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 3 of 21):from 402751 to 611850.] [NT:similar to


transcriptional regulator [AraC/XylS] [LE:158478] [RE:159353]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23626000_f2_582
3437
7209
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23629040_c2_1318
3438
7210
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23631928_f2_520
3439
7211
228
75





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23634651_c1_964
3440
7212
1044
347
549
5.0e−53










Description


pir:[LN:H70000] [AC:H70000] [PN:two-component sensor histidine kinase


homolog ytsB] [GN:ytsB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185912:g2635523] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytsB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21):from 2997771 to 3213410.] [NT:similar to


two-component sensor histidine kinase] [LE:113501] [RE:114505]


[DI:complement] >gp:[GI:g2293176] [LN:AF008220] [AC:AF008220] [PN:signal


transduction protein kinase] [GN:ytsB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:65922] [RE:66926] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23672137_c2_1196
3441
7213
957
318
260
6.6e−32










Description


pir:[LN:S76964] [AC:S76964] [PN:hypothetical protein] [OR:Synechocystis


sp.] [SR:PCC 6803, , PCC 6803] [SR:PCC 6803,] [DB:pir2]


>gp:[GI:d1019609:g1653966] [LN:D90917] [AC:D90917:AB001339] [PN:47 kD


protein] [OR:Synechocystis sp.] [SR:Synechocystis sp. (strain:PCC6803) DNA]


[DB:genpept-bct1] [DE:Synechocystis sp. PCC6803 complete genome, 27/27,


3418852–3573470.] [NT:ORF_ID:slr0609] [LE:151573] [RE:152724] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23672562_c1_924
3442
7214
297
98
86
0.0034










Description


gp:[GI:e8900:g1335718] [LN:PFRESAR1] [AC:X05182] [PN:ring-infected


eryrthrocyte surface antigen] [GN:RESA] [OR:Plasmodium falciparum]


[SR:malaria parasite P. falciparum] [DB:genpept-inv1] [DE:P. falciparum FC27


Ag46 RESA mRNA for ring-infected eryrthrocyte surface antigen.] [SP:P13830]


[LE:<1] [RE:>955] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23703750_c1_1095
3443
7215
639
212





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23728412_c3_1509
3444
7216
699
232
726
8.7e−72










Description


pir:[LN:C70020] [AC:C70020] [PN:conserved hypothetical protein yusB]


[GN:yusB] [CL:probable transport protein yaeE] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1184352:g2635770] [LN:BSUB0017] [AC:Z99120:AL009126]


[GN:yusB] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 17 of 21):from 3197001 to 3414420.]


[NT:similar to hypothetical proteins] [LE:164664] [RE:165332]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23844575_c2_1274
3445
7217
1062
353
1442
1.2e−147










Description


gp:[GI:e1393153:g4490612] [LN:SAU133520] [AC:AJ133520] [PN:gap regulator]


[GN:gapR] [OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus


aureus gap operon (gapR, gap, pgk and tpi genes).] [LE:779] [RE:1792]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23984775_f1_83
3446
7218
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_23989061_f2_399
3447
7219
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2401430_c3_1473
3448
7220
762
253
1076
7.1e−109










Description


gp:[GI:e1387399:g4379428] [LN:SAAJ3781] [AC:AJ223781] [PN:thioredoxin


reductase] [GN:trxB] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[EC:1.6.4.5] [DE:Staphylococcus aureus trxB gene.] [LE:1262] [RE:2197]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24022582_f2_316
3449
7221
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24033567_c2_1316
3450
7222
450
149
207
8.6e−17










Description


pir:[LN:G70023] [AC:G70023] [PN:hypothetical protein yutE] [GN:yutE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184309:g2635727] [LN:BSUB0017]


EAC:Z99120:AL009126] [GN:yutE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:120886] [RE:121320] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24218785_c2_1275
3451
7223
1047
348
1597
4.4e−164










Description


gp:[GI:e1393154:g4490613] [LN:SAU133520] [AC:AJ133520]


[PN:glyceraldehyde-3-phosphate dehydrogenase] [GN:gap] [FN:transferrin


binding protein] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus gap operon (gapR, gap, pgk and tpi genes).]


[NT:putative] [LE:1845] [RE:2855] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24230001_f2_362
3452
7224
258
85





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24240888_f1_281
3453
7225
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24242285_c3_1516
3454
7226
1056
351
439
2.2e−41










Description


gp:[GI:g4981378] [LN:AE001751] [AC:AE001751:AE000512] [PN:hemolysin-related


protein] [GN:TM0845] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 63 of 136 of the complete genome.]


[NT:similar to GB:AE000783 percent identity:61.61;] [LE:5310] [RE:6677]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24251500_f2_416
3455
7227
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24253153_f1_150
3456
7228
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24256287_c2_1260
3457
7229
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24258388_c3_1405
3458
7230
507
168
102
0.0053










Description


gp:[GI:e1407794:g4493938] [LN:PFMAL3P5] [AC:AL034556] [GN:MAL3P5.10]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P5, complete sequence.]


[NT:predicted using hexExon; MAL3P5.10 (PFC0620w),] [LE:46925] [RE:48919]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24259762_f3_679
3459
7231
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24266888_c3_1413
3460
7232
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24272125_c2_1292
3461
7233
261
86
72
0.024










Description


gp:[GI:g942589] [LN:MIU29676] [AC:U29676:X55271] [PN:unknown] [OR:Mycoplasma


iowae] [DB:genpept-bct2] [DE:Mycoplasma iowae 16S rRNA gene, complete


sequence, and 23S rRNA gene, partial sequence.] [LE:<1] [RE:438] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24297000_f2_548
3462
7234
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24329053_c1_979
3463
7235
444
147
142
2.8e−09










Description


gp:[GI:g3329623] [LN:CELF36H12] [AC:AF078790] [GN:F36H12.3]


[OR:Caenorhabditis elegans] [DB:genpept-inv2] [DE:Caenorhabditis elegans


cosmid F36H12.] [NT:coded for by C. elegans cDNA CEMSF30F]


[LE:21606:21872:22500:22677] [RE:21701:22454:22629:22875] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24335801_c2_1326
3464
7236
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24345257_f3_652
3465
7237
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24347175_c3_1416
3466
7238
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24391937_c1_1068
3467
7239
759
252
105
0.0062










Description


pir:[LN:E70031] [AC:E70031] [PN:hypothetical protein yvcD] [GN:yvcD]


[CL:tetratricopeptide repeat homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186169:g2635994] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvcD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [LE:175675]


[RE:177129] [DI:complement] >gp:[GI:e313021:g1945645] [LN:BSZ94043]


[AC:Z94043] [PN:hypothetical protein] [GN:yvcD] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).] [LE:4542]


[RE:5996] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24397952_c1_1067
3468
7240
681
226
119
0.00011










Description


pir:[LN:E70031] [AC:E70031] [PN:hypothetical protein yvcD] [GN:yvcD]


[CL:tetratricopeptide repeat homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186169:g2635994] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvcD]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [LE:175675]


[RE:177129] [DI:complement] >gp:[GI:e313021:g1945645] [LN:BSZ94043]


[AC:Z94043] [PN:hypothetical protein] [GN:yvcD] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).] [LE:4542]


[RE:5996] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24406577_c3_1415
3469
7241
390
129





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24407637_f1_57
3470
7242
243
80





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24415930_f2_310
3471
7243
1068
355
977
2.2e−98










Description


pir:[LN:D70024] [AC:D70024] [PN:NADH dehydrogenase homolog yutJ] [GN:yutJ]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184299:g2635717] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yutJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to NADH dehydrogenase] [LE:110924]


[RE:111916] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24429650_c3_1408
3472
7244
1197
398
848
1.0e−84










Description


sp:[LN:NAGA_BACSU] [AC:O34450] [GN:NAGA] [OR:BACILLUS SUBTILIS]


[EC:3.5.1.25] [DE:DEACETYLASE)] [SP:O34450] [DB:swissprot] >pir:[LN:A69664]


[AC:A69664] [PN:N-acetylglucosamine-6-phosphate deacetylase nagA] [GN:nagA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186189:g2636014] [LN:BSUB0018]


[AC:Z99121:AL009126] [PN:N-acetylglucosamine-G-phosphate deacetylase]


[GN:nagA] [FN:N-acetyl glucosamine utilization] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:3.5.1.25] [DE:Bacillus subtilis complete genome


(section 18 of 21):from 3399551 to 3609060.] [SP:O34450] [LE:194866]


[RE:196056] [DI:direct] >gp:[GI:g2618856] [LN:AF017113] [AC:AF017113]


[PN:N-acetylglucosamine 6-P deacetylase] [GN:nagA] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis 300–304 degree genomic sequence.]


[LE:31777] [RE:32967] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24479842_c1_1106
3473
7245
558
185
256
5.5e−22










Description


pir:[LN:D69800] [AC:D69800] [PN:conserved hypothetical protein yfhC]


[GN:yfhC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182838:g2633172]


[LN:BSUB0005] [AC:Z99108:AL009126] [GN:yfhC] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 5


of 21):from 802821 to 1011250.] [NT:similar to hypothetical proteins]


[LE:120274] [RE:120858] [DI:direct] >gp:[GI:d1025385:g2804533] [LN:D85082]


[AC:D85082] [PN:YfhC] [OR:Bacillus subtilis] [SR:Bacillus subtilis DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis DNA, genome sequence, 79 to 81


degree region.] [LE:13165] [RE:13749] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24490676_c2_1179
3474
7246
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24506712_c2_1240
3475
7247
975
324
879
5.3e−88










Description


gp:[GI:e1330453:g3724156] [LN:SAA005352] [AC:AJ005352] [PN:membrane protein]


[GN:sstB] [FN:iron transport] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus, Sst putative iron transport operon.] [LE:1451]


[RE:2132] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24507932_c1_1027
3476
7248
600
199
322
5.6e−29










Description


pir:[LN:D699241] [AC:D69924] [PN:hypothetical protein yorS] [GN:yorS]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185499:g2634420] [LN:BSUB0011]


[AC:Z99114:AL009126] [GN:yorS] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 11 of 21):


from 2000171 to 2207900.] [LE:172005] [RE:172523] [DI:complement]


>gp:[GI:g3025618] [LN:AF020713] [AC:AF020713] [PN:unknown] [GN:yorS]


[OR:Bacteriophage SPBc2] [DB:genpept-phg] [DE:Bacteriophage SPBc2 complete


genome.] [LE:112997] [RE:113515] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24611512_c2_1139
3477
7249
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24616050_f2_445
3478
7250
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24640828_c2_1138
3479
7251
516
171





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24642632_f3_765
3480
7252
1245
414
1245
8.7e−127










Description


sp:[LN:PEPT_BACSU] [AC:P55179] [GN:PEPT] [OR:BACILLUS SUBTILIS]


[EC:3.4.11.—] [DE:PEPTIDASE T, (AMINOTRIPEPTIDASE) (TRIPEPTIDASE)]


[SP:P55179] [DB:swissprot] >pir:[LN:H69674] [AC:H69674]


[PN:aminotripeptidase,:peptidase T] [GN:pepT] [OR:Bacillus subtilis]


[EC:3.4.11.—] [DB:pir2] >gp:[GI:e254163:g1429259] [LN:BSGALE] [AC:X99339]


[GN:pepT] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis orfs 1,2,3,4, pepT and galE genes.] [SP:P55179] [LE:5267]


[RE:6499] [DI:direct] >gp:[GI:e1186391:g2636427] [LN:BSUB0020]


[AC:Z99123:AL009126] [PN:peptidase T (tripeptidase)] [GN:pepT] [OR:Bacillus


subtilis] [DB:genpept-bct1] [EC:3.4.11.—] [DE:Bacillus subtilis complete


genome (section 20 of 21):from 3798401 to 4010550.] [SP:P55179] [LE:195467]


[RE:196699] [DI:direct] >gp:[GI:d1012379:g1783235] [LN:D83026]


[AC:D83026:D45911] [GN:pepT] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:BGSC 1A1) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome


sequence covering lic-cel region.] [NT:highly homologous to tripeptidases


(peptidase T)] [LE:27766] [RE:28998] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24650427_f2_349
3481
7253
330
109
331
6.2e−30










Description


pir:[LN:C69772] [AC:C69772] [PN:thioredoxin homolog ydbP] [GN:ydbP]


[CL:thioredoxin:thioredoxin homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:d1020045:g1881265] [LN:AB001488] [AC:AB001488] [GN:ydbP]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:168) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence, 148 kb sequence of


the region between 35 and 47 degree.] [NT:PROBABLE THIOREDOXIN.] [LE:40816]


[RE:41136] [DI:complement] >gp:[GI:e1182421:g2632755] [LN:BSUB0003]


[AC:Z99106:AL009126] [GN:ydbP] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3 of 21):


from 402751 to 611850.] [NT:similar to thioredoxin] [LE:104560] [RE:104880]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24650462_c1_944
3482
7254
1515
504
848
1.0e−84










Description


pir:[LN:G70008] [AC:G70008] [PN:NADH dehydrogenase (ubiquinone) homolog


yufD] [GN:yufD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184241:g2635659]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yufD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to NADH dehydrogenase


(ubiquinone)] [LE:51840] [RE:53282] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24664840_c2_1203
3483
7255
1968
655
1694
2.3e−174










Description


pir:[LN:H69626] [AC:H69626] [PN:PTS fructose-specific enzyme IIBC component


fruA] [GN:fruA] [CL:phosphotransferase system enzyme II,


fructose-specific:phosphotransferase system mannitol-specific enzyme II


factor III homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185030:g2633811] [LN:BSUB0008] [AC:Z99111:AL009126]


[PN:phosphotransferase system (PTS)] [GN:fruA] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8 of 21):


from 1394791 to 1603020.] [LE:113871] [RE:115778] [DI:direct]


>gp:[GI:g3282125] [LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:fructose


PTS IIABC] [GN:fruA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus


subtilis mobA-nprE gene region.] [NT:similar to fructose-specific PTS system


IIBC] [LE:14359] [RE:16266] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24796927_f1_61
3484
7256
789
262
325
2.7e−29










Description


pir:[LN:E69883] [AC:E69883] [PN:phage-related replication protein homolog


ymaC] [GN:ymaC] [CL:phage-related replication protein] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1183386:g2634111] [LN:BSUB0010]


[AC:Z99113:AL009126] [GN:ymaC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 10 of 21):


from 1781201 to 2014980.] [NT:similar to phage-related protein] [LE:81490]


[RE:82197] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24803125_c1_993
3485
7257
978
325
982
6.5e−99










Description


sp:[LN:MDH_BACIS] [AC:Q59202] [GN:MDH] [OR:BACILLUS ISRAELI] [EC:1.1.1.37]


[DE:MALATE DEHYDROGENASE,] [SP:Q59202] [DB:swissprot] >pir:[LN:S61213]


[AC:S61213] [PN:malate dehydrogenase,] [CL:L-lactate dehydrogenase]


[OR:Bacillus israeli] [EC:1.1.1.37] [DB:pir2] >gp:[GI:g963019] [LN:BIDNAMD]


[AC:X90527] [PN:malate dehydrogenase] [OR:Bacillus israeli]


[DB:genpept-bct1] [EC:1.1.1.37] [DE:B. israeli DNA for malate dehydrogenase


gene.] [SP:Q59202] [LE:291] [RE:1229] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_24803332_c2_1305
3486
7258
840
279
712
2.6e−70










Description


pir:[LN:B70020] [AC:B70020] [PN:conserved hypothetical protein yusA]


[GN:yusA] [CL:lipoprotein-28] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184351:g2635769] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yusA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


hypothetical proteins] [LE:163826] [RE:164650] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2531500_c3_1360
3487
7259
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25401377_c1_1045
3488
7260
852
283
939
2.3e−94







Description


gp:[GI:e1330454:g3724157] [LN:SAA005352] [AC:AJ005352] [PN:ATP binding


protein] [GN:SstC] [FN:iron transport] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus, Sst putative iron transport


operon.] [LE:2186] [RE:2947] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25401675_c2_1319
3489
7261
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25415802_c1_1102
3490
7262
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25473782_c3_1498
3491
7263
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25492312_f1_302
3492
7264
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25572180_c1_956
3493
7265
1272
423
895
1.1e−89










Description


sp:[LN:YXJA_BACSU] [AC:P42312] [GN:YXJA:N15HR] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 43.7 KD PROTEIN IN KATB 3′REGION] [SP:P42312]


[DB:swissprot] >pir:[LN:G70078] [AC:G70078] [PN:pyrimidine nucleoside


transport homolog yxjA] [GN:yxjA] [CL:pyrimidine nucleoside transport


protein nupC] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186401:g2636437]


[LN:BSUB0020] [AC:Z99123:AL009126] [GN:yxjA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


20 of 21):from 3798401 to 4010550.] [NT:similar to pyrimidine nucleoside


transport] [SP:P42312] [LE:206141] [RE:207334] [DI:direct]


>gp:[GI:e1184627:g2636448] [LN:BSUB0021] [AC:Z99124:AL009126] [GN:yxjA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 21 of 21):from 3999281 to 4214814.] [NT:similar to


pyrimidine nucleoside transport] [SP:P42312] [LE:5261] [RE:6454] [DI:direct]


>gp:[GI:d1012369:g665999] [LN:D83026] [AC:D83026:D45911] [GN:yxjA]


[OR:Bacillus subtilis] [SR:Bacillus subtilis (strain:BGSC 1A1) DNA]


[DB:genpept-bct1] [DE:Bacillus subtilis genome sequence covering lic-cel


region.] [NT:homologous to pyrimidine nucleoside transport] [LE:17131]


[RE:18324] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25585891_c2_1218
3494
7266
1980
659
1949
2.2e−201










Description


pir:[LN:D69815] [AC:D69815] [PN:conserved hypothetical protein yfnI]


[GN:yfnI] [CL:Bacillus subtilis probable anion-binding protein yflE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182705:g2633039] [LN:BSUB0004]


[AC:Z99107:AL009126] [GN:yfnI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 4 of 21):


from 600701 to 813890.] [NT:alternate gene name:yetP; similar to


hypothetical] [LE:195080] [RE:197041] [DI:direct] >gp:[GI:d1020933:g2116767]


[LN:D86418] [AC:D86418] [PN:YfnI] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain:AC327) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genomic


DNA 69–70 degree region, partial sequence.] [LE:16150] [RE:18111]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_25806300_f1_275
3495
7267
750
249
1270
2.0e−129










Description


gp:[GI:e255626:g1617428] [LN:SEABCTS] [AC:X99127] [PN:ATP binding protein]


[FN:iron repressible ABC transport system] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis gene encoding ABC transport system.]


[LE:41] [RE:787] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26171927_c2_1246
3496
7268
342
113
221
2.8e−18










Description


sp:[LN:YTXJ_BACSU] [AC:P39914] [GN:YTXJ] [OR:BACILLUS SUBTILIS] [DE:(ORF3)]


[SP:P39914] [DB:swissprot] >pir:[LN:S21420] [AC:S21420:F70003:S71003]


[PN:general stress protein homolog ytxJ] [GN:ytxJ] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g39815] [LN:BSAROAG] [AC:X65945] [GN:orf 2] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis aroA-aroG gene.] [SP:P39914]


[LE:105] [RE:431] [DI:direct] >gp:[GI:e1185849:g2635460] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytxJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:alternate gene name:csb40; similar to general]


[SP:P39914] [LE:48061] [RE:48387] [DI:complement] >gp:[GI:g2293219]


[LN:AF008220] [AC:AF008220] [PN:YtxJ] [GN:ytxJ] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:132039] [RE:132365] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26176693_f2_482
3497
7269
828
275
685
1.9e−67










Description


pir:[LN:A69162] [AC:A69162] [PN:gufA protein homolog MTH473] [GN:MTH473]


[CL:gufA protein] [OR:Methanobacterium thermoautotrophicum] [DB:pir2]


>gp:[GI:g2621542] [LN:AE000831] [AC:AE000831:AE000666] [PN:conserved


protein] [GN:MTH473] [OR:Methanobacterium thermoautotrophicum]


[DB:genpept-bct1] [DE:Methanobacterium thermoautotrophicum from bases 404817


to 415582 (section 37 of 148) of the complete genome.] [NT:Function


Code:14.01 - Unknown, Conserved protein;] [LE:9769] [RE:10548] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2618827_c1_1042
3498
7270
288
95
75
0.023










Description


sp:[LN:LUXY_VIBFI] [AC:P21578] [GN:LUXY] [OR:VIBRIO FISCHERI] [DE:YELLOW


FLUORESCENT PROTEIN (YFP)] [SP:P21578] [DB:swissprot] >pir:[LN:A36037]


[AC:A36037:A39946] [PN:yellow fluorescent protein:luxY protein] [GN:luxY]


[CL:riboflavin synthase alpha chain] [OR:Vibrio fischeri] [DB:pir2]


>gp:[GI:g155235] [LN:VIBLUXY] [AC:M60852] [PN:yellow fluorescent protein]


[GN:luxY] [OR:Vibrio fischeri] [SR:V. fischeri (strain Y-1) DNA]


[DB:genpept-bct1] [DE:Vibrio fischeri yellow fluorescent protein (luxY)


gene, completecds.] [LE:45] [RE:629] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26190785_c2_1306
3499
7271
1287
428
1408
4.7e−144










Description


pir:[LN:F70019] [AC:F70019] [PN:NifS protein homolog homolog yurW] [GN:yurW]


[CL:nifS protein] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184347:g2635765] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yurW]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


NifS protein homolog] [LE:159503] [RE:160723] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26204837_f1_69
3500
7272
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26211552_c2_1270
3501
7273
984
327
1034
2.0e−104










Description


pir:[LN:B70032] [AC:B70032] [PN:conserved hypothetical protein yvcL]


[GN:yvcL] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186163:g2635988]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvcL] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[LE:169083] [RE:170033] [DI:complement] >gp:[GI:e313028:g1945652]


[LN:BSZ94043] [AC:Z94043] [PN:hypothetical protein] EGN:yvcL] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).]


[NT:similar to Y103_MYCGE hypothetical protein mg103] [LE:11638] [RE:12588]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26259638_f1_134
3502
7274
765
254
176
2.2e−11










Description


pir:[LN:B70798] [AC:B70798 ] [PN:probable membrane protein] [GN:Rv3737]


[OR:Mycobacterium tuberculosis] [DB:pir2] >gp:[GI:e1264597:g2960161]


[LN:MTV025] [AC:AL022121:AL123456] [PN:hypothetical protein Rv3737]


[GN:Rv3737] [OR:Mycobacterium tuberculosis] [DB:genpept-bct1]


[DE:Mycobacterium tuberculosis H37Rv complete genome; segment 155/162.]


[NT:Rv3737, (MTV025.085), len:529. Probable membrane] [LE:94796] [RE:96385]


[DI:direct] >gp:[GI:e1264597:g2960161] [LN:MTV025] [AC:AL022121:AL123456]


[PN:hypothetical protein Rv3737] [GN:Rv3737] [OR:Mycobacterium tuberculosis]


[DB:genpept] [DE:Mycobacterium tuberculosis H37Rv complete genome; segment


155/162.] [NT:Rv3737, (MTV025.085), len:529. Probable membrane] [LE:94796]


[RE:96385] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26359805_f1_11
3503
7275
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26360663_c3_1530
3504
7276
1308
435
1039
5.9e−105










Description


pir:[LN:A70015] [AC:A70015] [PN:NADH dehydrogenase homolog yumB] [GN:yumB]


[CL:NADH dehydrogenase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184289:g2635707] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yumB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


NADH dehydrogenase] [LE:102091] [RE:103311] [DI:complement]


>gp:[GI:e311467:g1934829] [LN:BSZ93939] [AC:Z93939] [PN:NADH dehydrogenase]


[GN:yumB] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis genomic


DNA fragment from yumA to yulF.] [NT:putative; unknown] [LE:528] [RE:1748]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26367175_c3_1476
3505
7277
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26376077_c1_1113
3506
7278
192
63
101
1.5e−05










Description


pir:[LN:C70063] [AC:C70063] [PN:hypothetical protein ywmG] [GN:ywmG]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e276829:g1648859] [LN:BSATPC]


[AC:Z81356] [PN:unknown] [GN:ywmH] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis atpC gene.] [LE:10910] [RE:11098] [DI:direct]


>gp:[GI:e1184573:g2636192] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:ywmG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [LE:172069]


[RE:172257] [DI:complement] >gp:[GI:e1184573:g2636192] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:ywmG] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [LE:172069] [RE:172257] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26464707_c3_1493
3507
7279
141
46
43
0.039










Description


pir:[LN:S58357] [AC:S66652:S58357] [PN:pepI protein] [GN:pepI]


[OR:Staphylococcus epidermidis] [DB:pir2] >gp:[GI:g945016] [LN:SEPEPGNS]


[AC:Z49865] [PN:PepI] [GN:pepI] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis pepA, pepB, pepC, pepI, pepP and pepT


genes.] [LE:2028] [RE:2237] [DI:direct] >gp:[GI:g398082] [LN:STAPEPA]


[AC:L23967] [PN:immunity protein] [GN:pepI] [OR:Staphylococcus epidermidis]


[SR:Staphylococcus epidermidis DNA] [DB:genpept-bct1] [DE:Staphylococcus


epidermidis lantibiotic (pepA) and immunity protein (pepI) gene, complete


cds.] [LE:377] [RE:586] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26578577_c1_1065
3508
7280
1791
596
2276
1.8e−238










Description


sp:[LN:UVRA_BACSU] [AC:O34863] [GN:UVRA] [OR:BACILLUS SUBTILIS]


[DE:EXCINUCLEASE ABC SUBUNIT A] [SP:O34863] [DB:swissprot] >pir:[LN:F69729]


[AC:F69729] [PN:excinuclease ABC chain A:excision endonuclease ABC,, chain


A:uvrA protein] [GN:uvrA] [CL:excinuclease ABC chain A:ATP-binding cassette


homology] [OR:Bacillus subtilis] [EC:3.1.—.—] [DB:pir2]


>gp:[GI:e1184422:g2636042] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:excinuclease ABC (subunit A)] [GN:uvrA] [FN:excision of ultraviolet


light-induced] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 19 of 21):from 3597091 to 3809700.]


[SP:O34863] [LE:12034] [RE:14907] [DI:complement] >gp:[GI:g2618842]


[LN:AF017113] [AC:AF017113] [PN:excinuclease ABC subunit A] [GN:uvrA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 300–304


degree genomic sequence.] [LE:15386] [RE:18259] [DI:direct]


>gp:[GI:e1184422:g2636042] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:excinuclease ABC (subunit A)] [GN:uvrA] [FN:excision of ultraviolet


light-induced] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [SP:O34863]


[LE:12034] [RE:14907] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26594050_c3_1524
3509
7281
243
80
378
6.5e−35










Description


gp:[GI:d1013748:g1405337] [LN:D86240] [AC:D86240] [PN:D-alanyl carrier


protein] [GN:dltC] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(isolate:KAN9G) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus gene for


unknown function and dlt operon dltA, dltB, dltC and dltD genes, complete cds.]


[NT:Sequence homologous to the dltC genes of] [LE:5303] [RE:5539]


[DI:direct] >gp:[GI:g4530243] [LN:AF101234] [AC:AF101234] [PN:D-alanine


carrier protein DltC] [GN:dltC] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus dltABCD operon, complete sequence; and unknown


gene.] [LE:4276] [RE:4512] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26735877_c3_1508
3510
7282
402
133
446
4.1e−42










Description


pir:[LN:A70021] [AC:A70021] [PN:glycine cleavage system protein H homolog


yusH] [GN:yusH] [CL:glycine cleavage system protein H:


lipoyl/biotin-binding homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184358:g2635776] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yusH]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


glycine cleavage system protein H] [LE:168182] [RE:168565] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26753150_f1_147
3511
7283
336
111
295
4.1e−26










Description


sp:[LN:YKI4_YEAST] [AC:P36078] [GN:YKL084W] [OR:SACCHAROMYCES CEREVISIAE]


[SR:,BAKER'S YEAST] [DE:HYPOTHETICAL 13.6 KD PROTEIN IN MDH1-VMA5 INTERGENIC


REGION] [SP:P36078] [DB:swissprot] >pir:[LN:S37909] [AC:S37909]


[PN:hypothetical protein YKL084w] [OR:Saccharomyces cerevisiae] [DB:pir2]


[MP:11L] >gp:[GI:g486123] [LN:SCYKL084W] [AC:Z28084:Y13137]


[OR:Saccharomyces cerevisiae] [SR:baker's yeast] [DB:genpept-pln1]


[DE:S. cerevisiae chromosome XI reading frame ORF YKL084w.] [NT:ORF YKL084w]


[SP:P36078] [LE:382] [RE:732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26757807_f2_578
3512
7284
951
316
1619
2.0e−166










Description


gp:[GI:e255529:g1617430] [LN:SEABCTS] [AC:X99127] [PN:lipoprotein] [FN:iron


repressible ABC transport system] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis gene encoding ABC transport system.]


[LE:1621] [RE:2550] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26834387_f1_234
3513
7285
711
236
115
1.2e−06










Description


gp:[GI:g3043880] [LN:LLU95841] [AC:U95841] [PN:transmembrane protein Tmp6]


[OR:Lactococcus lactis] [DB:genpept-bct2] [DE:Lactococcus lactis


transmembrane protein Tmp6 gene, partial cds.] [NT:identified as a fusion to


a signal peptide-less] [LE:<1] [RE:354] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_26839462_c3_1474
3514
7286
1011
336
817
2.0e−81










Description


sp:[LN:YVCK_BACSU] [AC:O06974] [GN:YVCK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 34.7 KD PROTEIN IN CRH-TRXB INTERGENIC REGION] [SP:O06974]


[DB:swissprot] >gp:[GI:e313027:g1945651] [LN:BSZ94043] [AC:Z94043]


[PN:hypothetical protein] [GN:yvcK] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment (88 kb).] [NT:similar to hypothetical


SYCSLRA] [SP:O06974] [LE:10662] [RE:11615] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2752262_c3_1426
3515
7287
1014
337
652
6.0e−64










Description


pir:[LN:G69669] [AC:G69669] [PN:choline ABC transporter (ATP-binding


protein) opuBA] [GN:opuBA] [CL:glycine betaine/proline transport protein


proV:ATP-binding cassette homology:CBS homology] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1186061:g2635886] [LN:BSUB0018] [AC:Z99121:AL009126]


[PN:choline ABC transporter (ATP-binding protein)] [GN:opuBA] [FN:high


affinity transport of choline] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 18 of 21):from 3399551 to


3609060.] [NT:alternate gene name:proV] [LE:61618] [RE:62763]


[DI:complement] >gp:[GI:g2293447] [LN:AF008930] [AC:AF008930] [PN:ATPase]


[GN:opuBA] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


choline transport system including ATPase (opuBA), transmembrane protein


(opuBB), choline binding protein precursor (opuBC) and transmembrane protein


(opuBD) genes, complete cds; and unknown gene.] [NT:OpuBA; part of choline


uptake system] [LE:881] [RE:2026] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_275268_c2_1225
3516
7288
1125
374
766
5.0e−76










Description


sp:[LN:HIS8_BACSU] [AC:P17731:O32008] [GN:HISC:HISH] [OR:BACILLUS SUBTILIS]


[EC:2.E.1.9] [DE:PHOSPHATE TRANSAMINASE)] [SP:P17731:O32008] [DB:swissprot]


>pir:[LN:A26532] [AC:A26532:G22794:H69640] [PN:histidinol-phosphate


transaminase, / tyrosine and phenylalanine aminotransferase


hisC:histidinol-phosphate aminotransferase] [GN:hisC:hisH] [CL:probable


histidinol-phosphate transaminase] [OR:Bacillus subtilis] [EC:2.6.1.9]


[DB:pir2] [MP:205 (degrees)] >gp:[GI:g143814] [LN:BACVARGNS]


[AC:M80245:M15409] [PN:HisH] [GN:hisH] [OR:Bacillus subtilis] [SR:Bacillus


subtilis DNA] [DB:genpept-bct1] [DE:B. subtilis dbpA, mtr(A,B), gerC(1–3),


ndk, cheR, aro(B,E,F,H), trp(A–F), hisH, and tyrA genes, complete cds.]


[LE:14250] [RE:15332] [DI:direct] >gp:[GI:e1183707:g2634680] [LN:BSUB0012]


[AC:Z99115:AL009126] [PN:tyrosine/phenylalanine aminotransferase] [GN:hisC]


[FN:histidine biosynthesis] [OR:Bacillus subtilis] [DB:genpept-bct1]


[EC:2.6.1.9:2.6.1.5] [DE:Bacillus subtilis complete genome (section 12 of


21):from 2195541 to 2409220.] [NT:alternate gene name:aroJ;


histidinol-phosphate] [SP:P17731] [LE:174116] [RE:175198] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2917200_f1_277
3517
7289
192
63





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2926425_f2_465
3518
7290
960
319
456
3.5e−43










Description


sp:[LN:BMRU_BACSU] [AC:P39074] [GN:BMRU] [OR:BACILLUS SUBTILIS] [DE:BMRU


PROTEIN] [SP:P39074] [DB:swissprot] >pir:[LN:F69595] [AC:F69595]


[PN:multidrug resistance protein cotranscribed with bmr bmrU] [GN:bmrU]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g409286] [LN:BACBMRURBE]


[AC:L25604] [GN:bmrU] [FN:unknown, but cotranscribed with bmr] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis bmrU, multidrug efflux


transporter (bmr) and its regulator (bmrR) genes, complete cds, and


branched-chain 2-oxo acid dehydrogenase (bfmB) gene, 3 end.] [LE:227]


[RE:1120] [DI:direct] >gp:[GI:d1013282:g1303947] [LN:BACJH642]


[AC:D84432:D82370] [PN:BmrU] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:JH642(trpC2 PheAl)) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis


DNA, 283 Kb region containing skin element.] [LE:225092] [RE:225985]


[DI:complement] >gp:[GI:e1185668:g2634834] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:multidrug resistance protein] [GN:bmrU]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 13 of 21):from 2395261 to 2613730.] [SP:P39074] [LE:97634]


[RE:98527] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_2929517_c3_1399
3519
7291
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_29376503_f2_504
3520
7292
246
81





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_29378425_f3_790
3521
7293
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_29501510_c1_950
3522
7294
1125
374
432
1.2e−40










Description


sp:[LN:TAGB_BACSU] [AC:P27621] [GN:TAGB] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID BIOSYNTHESIS PROTEIN B PRECURSOR] [SP:P27621] [DB:swissprot]


>pir:[LN:C49757] [AC:C49757:C69720] [PN:polyglycerol phosphate techoic acid


biosynthesis protein tagB] [GN:tagB] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g143725] [LN:BACTAGABCD] [AC:M57497] [GN:tagB] [OR:Bacillus


subtilis] [SR:B. subtilis (strain 168) DNA] [DB:genpept-bct1] [DE:B. subtilis


tagA, tagB, tagC and tagD genes, complete cds.] [NT:putative] [LE:1603]


[RE:2748] [DI:direct] >gp:[GI:e1184482:g2636102] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:tagB] [FN:polyglycerol phosphate assembly and


export] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [SP:P27621]


[LE:84143] [RE:85288] [DI:direct] >gp:[GI:e1184482:g2636102] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:tagB] [FN:polyglycerol phosphate assembly and


export] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis complete


genome (section 19 of 21):from 3597091 to 3809700.] [SP:P27621] [LE:84143]


[RE:85288] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_29570877_c3_1414
3523
7295
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3001313_c2_1262
3524
7296
681
226
154
3.6e−11










Description


pir:[LN:A65001] [AC:A65001] [PN:hypothetical protein b2291] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:g1788628] [LN:AE000318] [AC:AE000318:U00096]


[PN:putative alpha helix protein] [GN:b2291] [FN:phenotype; Not classified]


[OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli K-12 MG1655


section 208 of 400 of the complete genome.] [NT:o199] [LE:4988] [RE:5587]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30198587_f3_629
3525
7297
258
85
306
2.8e−27










Description


pir:[LN:C70024] [AC:C70024] [PN:NifU protein homolog homolog yutI] [GN:yutI]


[CL:conserved hypothetical nifU-like protein HP1492] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184301:g2635719] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yutI] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to NifU protein homolog] [LE:112444]


[RE:112779] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30265692_c3_1521
3526
7298
1050
349
1070
3.1e−108










Description


gp:[GI:g4530240] [LN:AF101234] [AC:AF101234] [PN:unknown] [OR:Staphylococcus


aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus dltABCD operon, complete


sequence; and unknown gene.] [NT:Orf1; similar to hydroxyacid dehydrogenases]


[LE:51] [RE:1010] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30272661_f1_265
3527
7299
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30491275_c1_961
3528
7300
1104
367
391
2.7e−36










Description


pir:[LN:H69867] [AC:H69867] [PN:conserved hypothetical protein ykvI]


[GN:ykvI] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184961:g2633742]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to hypothetical proteins from


B. subtilis] [LE:42768] [RE:43811] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30601588_c3_1356
3529
7301
834
277
561
2.6e−54










Description


sp:[LN:TAGG_BACSU] [AC:P42953] [GN:TAGG] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID TRANSLOCATION PERMEASE PROTEIN TAGG] [SP:P42953] [DB:swissprot]


>pir:[LN:S69202] [AC:S69202:H69720] [PN:teichoic acid permease


tagG:integral membrane protein tagG] [GN:tagG] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:g755152] [LN:BSU13832] [AC:U13832] [PN:highly hydrophobic


integral membrane protein] [GN:tagG] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 highly


hydrophobic integral membrane protein(tagG) gene and ATP-binding protein


(tagH) gene, complete cds.] [LE:287] [RE:1114] [DI:direct]


>gp:[GI:e1184477:g2636097] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:permease]


[GN:tagG] [FN:teichoic acid translocation] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [SP:P42953] [LE:77137] [RE:77964] [DI:complement]


>gp:[GI:e1184477:g2636097] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:permease]


[GN:tagG] [FN:teichoic acid translocation] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [SP:P42953] [LE:77137] [RE:77964] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30661260_c1_1080
3530
7302
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_30745328_c1_1103
3531
7303
606
201
200
4.8e−16










Description


pir:[LN:S56619] [AC:S56619:B65255] [PN:gpmB protein:hypothetical protein


o215b] [GN:gpmB] [CL:phosphoglycerate mutase homology] [OR:Escherichia


coli] [DB:pir2] >gp:[GI:g537235] [LN:ECOUW93] [AC:U14003] [OR:Escherichia


coli] [DB:genpept-bct1] [DE:Escherichia coli K-12 chromosomal region from


92.8 to 00.1 minutes.] [NT:Kenn Rudd identifies as gpmB] [LE:324630]


[RE:325277] [DI:direct] >gp:[GI:g1790856] [LN:AE000509] [AC:AE000509:U00096]


[PN:phosphoglyceromutase 2] [GN:gpmB] [FN:enzyme; Energy metabolism, carbon:


Glycolysis] [OR:Escherichia coli] [DB:genpept-bct2] [DE:Escherichia coli


K-12 MG1655 section 399 of 400 of the complete genome.] [LE:8985] [RE:9632]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31257943_c2_1156
3532
7304
414
137
669
9.5e−66










Description


gp:[GI:g1913907] [LN:SAU91741] [AC:U91741] [PN:TagD] [GN:tagD] [FN:teichoic


acid biosynthesis] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus teichoic acid biosynthesis TagB gene, partial cds


and TagX and TagD genes, complete cds.] [NT:similar to Bacillus subtilis


TagD] [LE:1534] [RE:1932] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31267503_c2_1168
3533
7305
813
270
784
6.2e−78










Description


pir:[LN:A70001] [AC:A70001] [PN:ABC transporter (ATP-binding protein)


homolog ytsC] [GN:ytsC] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1185911:g2635522] [LN:BSUB0016]


[AC:Z99119:AL009126] [GN:ytsC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 16 of 21):


from 2997771 to 3213410.] [NT:similar to ABC transporter (ATP-binding


protein)] [LE:112638] [RE:113399] [DI:complement] >gp:[GI:g2293177]


[LN:AF008220] [AC:AF008220] [PN:transporter] [GN:ytsC] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[LE:67028] [RE:67789] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31289687_c1_1051
3534
7306
681
226
132
5.1e−06










Description


gp:[GI:g4894306] [LN:AF065404] [AC:AF065404] [PN:pXO1-90] [OR:Bacillus


anthracis] [DB:genpept-bct2] [DE:Bacillus anthracis virulence plasmid PX01,


complete sequence.] [LE:106772] [RE:108730] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31428188_f2_401
3535
7307
222
73





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31578_c2_1265
3536
7308
537
178
463
5.4e−44










Description


pir:[LN:H70044] [AC:H70044] [PN:O-acetyltransferase homolog yvoF] [GN:yvoF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186184:g2636009] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvoF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to O-acetyltransferase] [LE:190798]


[RE:191316] [DI:complement] >gp:[GI:g2618861] [LN:AF017113] [AC:AF017113]


[PN:putative acetyltransferase] [GN:yvoF] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis 300–304 degree genomic sequence.]


[LE:36517] [RE:37035] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31803377_f3_884
3537
7309
612
203





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_31876563_c1_1124
3538
7310
1239
412
1924
9.7e−199










Description


gp:[GI:d1013747:g1405336] [LN:D86240] [AC:D86240] [PN:hypothethecal membrane


transporter] [GN:dltB] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(isolate:KAN96) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus gene for


unknown function and dlt operon dltA, dltB, dltC and dltD genes, complete cds.]


[NT:Sequence homologous to the dltB genes of] [LE:4071] [RE:5285]


[DI:direct] >gp:GI:g4530242] [LN:AF101234] [AC:AF101234] [PN:putative


membrane protein DltB] [GN:dltB] [FN:involved in D-alanine transfer into


teichoic] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus dltABCD operon, complete sequence; and unknown gene.] [LE:3044]


[RE:4258] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32062553_c1_943
3539
7311
468
155
354
2.3e−32










Description


pir:[LN:S61393] [AC:561393] [PN:hypothetical protein 2] [OR:Bacillus sp.]


[SR:strain C-125, , strain C-125] [SR:strain C-125,] [DB:pir2]


>gp:[GI:d1007182:g854656] [LN:BACAPS] [AC:D31823] [PN:ORF2] [OR:Bacillus


sp.] [SR:Bacillus sp. (strain:C-125) DNA] [DB:genpept-bct1] [DE:Bacillus sp.


Na+/H+ antiporter system responsible genes.] [NT:Na+/H+ antiporter system


responsible gene] [LE:2669] [RE:3109] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32070827_f3_789
3540
7312
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32212902_c2_1135
3541
7313
1035
344
468
1.9e−44










Description


pir:[LN:F70046] [AC:F70046] [PN:iron permease homolog yvrB] [GN:yvrB]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1249808:g2832812] [LN:BS43KBDNA]


[AC:AJ223978] [PN:putative hemin permease, YvrB] [GN:yvrB] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 42.7 kB DNA fragment from


yvsA to yvqA.] [LE:24699] [RE:25760] [DI:direct] >gp:[GI:e1184396:g2635814]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvrB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to iron permease]


[LE:204527] [RE:205588] [DI:complement] >gp:[GI:e1186005:g2635830]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvrB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to iron permease] [LE:1977]


[RE:3038] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32225012_f1_54
3542
7314
498
165
276
4.2e−24










Description


pir:[LN:F69870] [AC:F69870] [PN:general stress protein homolog ykzA]


[GN:ykzA] [CL:hypothetical protein yklA] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1181516:g2632036] [LN:BSAJ2571] [AC:AJ002571] [PN:YknA] [GN:yknA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


168 56 kb DNA fragment between xlyA and ykoR.] [NT:homologous to OsmC from


Escherichia coli] [LE:34145] [RE:34555] [DI:direct]


>gp:[GI:e1183336:g2633670] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykzA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:alternate


gene name:yzzE; similar to general] [LE:187094] [RE:187504] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32475037_f3_651
3543
7315
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_32611068_c1_927
3544
7316
1674
557
1694
2.3e−174










Description


sp:[LN:SYR_BACSU] [AC:P46906] [GN:ARGS] [OR:BACILLUS SUBTILIS] [EC:6.1.1.19]


[DE:ARGINYL-TRNA SYNTHETASE, (ARGININE--TRNA LIGASE) (ARGRS)] [SP:P46906]


[DB:swissprot] >pir:[LN:E69589] [AC:E69589:S60082] [PN:arginine--tRNA


ligase, argS:arginyl-tRNA synthetase] [GN:argS] [CL:Bacillus arginine--tRNA


ligase] [OR:Bacillus subtilis] [EC:6.1.1.19] [DB:pir2]


>gp:[GI:e1186234:g2636270] [LN:BSUB0020] [AC:Z99123:AL009126]


[PN:arginyl-tRNA synthetase] [GN:argS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:6.1.1.19] [DE:Bacillus subtilis complete genome


(section 20 of 21):from 3798401 to 4010550.] [SP:P46906] [LE:34303]


[RE:35973] [DI:complement] >gp:[GI:e324388:g2224756] [LN:B5Z97024]


[AC:Z97024] [PN:arginyl tRNA synthetase] [GN:argS] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis ywiA, sbo, ywiB, argS and narK


genes.] [SP:P46906] [LE:1680] [RE:3350] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33210952_f2_370
3545
7317
234
77
93
0.0025










Description


gp:[GI:g3859891] [LN:AF072678] [AC:AF072678] [PN:alpha-actinin] [GN:AACTI]


[OR:Trichomonas vaginalis] [DB:genpept-inv2] [DE:Trichomonas vaginalis


alpha-actinin (AACTI) mRNA, complete cds.] [NT:actin binding protein]


[LE:247] [RE:3042] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33239001_f2_356
3546
7318
276
91





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33304063_f1_151
3547
7319
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33414143_c3_1395
3548
7320
1710
569
619
1.9e−60










Description


gp:[GI:g2773332] [LN:AF040718] [AC:AF040718] [PN:ABC transporter CydC]


[GN:cydC] [OR:Shigella flexneri] [DB:genpept-bct2] [DE:Shigella flexneri ABC


transporter CydC (cydC) gene, complete cds.] [NT:similar to E. coli CydC]


[LE:1648] [RE:3369] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33628441_f3_645
3549
7321
255
84





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_33645967_f1_18
3550
7322
282
93
73
0.019










Description


gp:[GI:g2444074] [LN:CPU88070] [AC:U88070] [GN:scc1] [FN:putative chaperone


of type III secretory] [OR:Chlamydophila caviae] [DB:genpept-bct2]


[DE:Chlamydophila caviae cds1, cds2, copN and scc1 genes, complete cds.]


[NT:similar to SycE of Yersinia] [LE:4766] [RE:5206] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34069680_c1_1125
3551
7323
213
70





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34160625_c3_1368
3552
7324
438
145





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34173262_c3_1497
3553
7325
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34173385_c1_975
3554
7326
621
206
151
7.4e−11










Description


pir:[LN:E71040] [AC:E71040] [PN:hypothetical protein PH1613] [GN:PH1613]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1031668:g3258042]


[LN:AP000006]


[AC:AP000006:AB005215:AB009510:AB009511:AB009512:AB009513:AB009514]


[PN:166aa long hypothetical protein] [GN:PH1613] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA, clone:Pyrococcus horikoshi]


[DB:genpept-bct1] [DE:Pyrococcus horikoshii OT3 genomic DNA, 1166001-1485000


nt. position(6/7).] [LE:263709] [RE:264209] [DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34173750_c3_1485
3555
7327
480
159





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34176550_f1_24
3556
7328
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34189817_c1_945
3557
7329
2052
683
888
5.9e−89










Description


pir:[LN:E70040] [AC:E70040] [PN:conserved hypothetical protein yvgP]


[GN:yvgP] [CL:hypothetical protein yvgP] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1186030:g2635855] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvgP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [NT:similar to


hypothetical proteins] [LE:27843] [RE:29855] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3424162_c3_1511
3558
7330
489
162
529
6.5e−51










Description


pir:[LN:E70019] [AC:E70019] [PN:NifU protein homolog homolog yurV] [GN:yurV]


[CL:Yeast nitrogen fixation protein:nitrogen fixation protein homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184346:g2635764] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yurV] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to NifU protein homolog] [LE:159070]


[RE:159513] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34251887_c2_1322
3559
7331
1266
421
1649
1.3e−169










Description


gp:[GI:g4530244] [LN:AF101234] [AC:AF101234] [PN:putative exoprotein DltD]


[GN:dltD] [FN:involved in D-alanine transfer into teichoic]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


dltABCD operon, complete sequence; and unknown gene.] [LE:4509] [RE:5684]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34254581_c1_954
3560
7332
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34261088_c3_1387
3561
7333
312
103
75
0.018





Description


gp:[GI:g488925] [LN:A13473] [AC:A13473] [PN:41 kd antigen] [OR:Plasmodium


falciparum] [SR:malaria parasite P. falciparum] [DB:genpept-pat]


[DE:P. falciparum gene for 41 kd antigen, clone 41-14.] [LE:<1] [RE:>532]


[DI:direct]





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34562762_c3_1336
3562
7334
750
249
230
3.2e−19










Description


pir:[LN:D71157] [AC:D71157] [PN:hypothetical protein PH0459] [GN:PH0459]


[OR:Pyrococcus horikoshii] [DB:pir2] >gp:[GI:d1030488:g3256862]


[LN:AP000002]


[AC:AP000002:AB009475:AB009476:AB009477:AB009478:AB009479:AB009480]


[PN:232aa long hypothetical protein] [GN:PH0459] [OR:Pyrococcus horikoshii]


[SR:Pyrococcus horikoshii (strain:OT3) DNA] [DB:genpept-bct1] [DE:Pyrococcus


horikoshii OT3 genomic DNA, 287001-544000 nt. position(2/7).] [LE:132975]


[RE:133673] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34571000_f1_163
3563
7335
537
178
393
1.7e−35










Description


sp:[LN:ADH2_ENTHI] [AC:Q24803:Q27649] [GN:ADH2] [OR:ENTAMOEBA HISTOLYTICA]


[EC:1.1.1.1:1.2.1.10] [DE:DEHYDROGENASE, (ACDH)] [SP:Q24803:Q27649]


[DB:swissprot] >gp:[GI:g488430] [LN:EHU04863] [AC:U04863] [PN:alcohol


dehydrogenase 2] [OR:Entamoeba histolytica] [DB:genpept-inv1] [DE:Entamoeba


histolytica HM1:IMSS alcohol dehydrogenase 2 (EhADH2)mRNA, complete cds.]


[NT:The derived amino acid sequence of EhADH2 is] [LE:3] [RE:2615]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34589027_c2_1197
3564
7336
315
104
98
0.00023










Description


sp:[LN:Y420_METJA] [AC:Q57863] [GN:MJ0420] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0420] [SP:Q57863] [DB:swissprot] >pir:[LN:D64352]


[AC:D64352] [PN:hypothetical protein MJ0420] [OR:Methanococcus jannaschii]


[DB:pir2] [MP:FOR378394-379536] >gp:[GI:g1591123] [LN:U67494]


[AC:U67494:L77117] [PN:O-antigen polymerase isolog] [GN:MJ0420]


[OR:Methanococcus jannaschii] [DB:genpept-bct2] [DE:Methanococcus jannaschii


section 36 of 150 of the complete genome.] [NT:similar to GB:M60066


SP:P26479 PID:154343 percent] [LE:1855] [RE:2997] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34612887_f2_512
3565
7337
465
154
260
2.1e−22










Description


pir:[LN:E69857] [AC:E69857] [PN:conserved hypothetical protein ykmA]


[GN:ykmA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181515:g2632035]


[LN:BSAJ2571] [AC:AJ002571] [PN:YkmA] [GN:ykmA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment


between xlyA and ykoR.] [LE:33559] [RE:34002] [DI:complement]


>gp:[GI:e1183335:g2633669] [LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykmA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 7 of 21):from 1194391 to 1411140.] [NT:similar to


hypothetical proteins] [LE:186508] [RE:186951] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34627136_f3_681
3566
7338
306
101
73
0.014










Description


pir:[LN:S36690] [AC:S36690] [PN:hypothetical protein] [OR:Autographa


californica nuclear polyhedrosis virus:AcMNPV] [DB:pir2] >gp:[GI:g296321]


[LN:ACNPVDNA] [AC:X71415] [GN:ORF 339] [OR:Autographa californica


nucleopolyhedrovirus] [DB:genpept-vrl] [DE:Autographa californica nuclear


polyhedrosis virus DNA.] [SP:Q06669] [LE:<1] [RE:339] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34641875_c3_1406
3567
7339
939
312
704
1.9e−69










Description


pir:[LN:A69627] [AC:A69627] [PN:fructose 1-phosphate kinase fruB] [GN:fruB]


[CL:6-phosphofructokinase 2] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185029:g2633810] [LN:BSUB0008] [AC:Z99111:AL009126]


[PN:fructose-1-phosphate kinase] [GN:fruB] [OR:Bacillus subtilis]


[DB:genpept-bct1] [EC:2.7.1.56] [DE:Bacillus subtilis complete genome


(section 8 of 21):from 1394791 to 1603020.] [LE:112945] [RE:113856]


[DI:direct] >gp:[GI:g3282124] [LN:AF012285] [AC:AF012285:AF012284:U51911]


[PN:fructose-1-phosphate kinase] [GN:fruB] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE gene region.] [NT:similar


to L. lactis tagatose-6-phosphate kinase,] [LE:13433] [RE:14344] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34642567_c1_1089
3568
7340
2406
801
2175
1.0e−228










Description


pir:[LN:G70027] [AC:G70027] [PN:conserved hypothetical protein yvaJ]


[GN:yvaJ] [CL:virulence-associated protein vacB homolog] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1186049:g2635874] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvaJ] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to hypothetical proteins] [LE:51375]


[RE:53714] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_34645311_f3_867
3569
7341
525
174
186
1.4e−14










Description


gp:[GI:g4981094] [LN:AE001732] [AC:AE001732:AE000512] [PN:conserved


hypothetical protein] [GN:TM0577] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 44 of 136 of the complete genome.]


[NT:similar to SP:P46854 PID:606376 GB:U00096] [LE:9820] [RE:10359]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3518_f2_375
3570
7342
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_35422880_c2_1228
3571
7343
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_35444127_f2_443
3572
7344
663
220
514
2.5e−49










Description


sp:[LN:YVYE_BACSU] [AC:P32437:P96500] [GN:YVYE:YVHK] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 24.8 KD PROTEIN IN DEGS-TAGO INTERGENIC REGION]


[SP:P32437:P96500] [DB:swissprot] >pir:[LN:A70049] [AC:A70049:A30191]


[PN:conserved hypothetical protein yvyE] [GN:yvyE] [CL:hypothetical protein


HI0722] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184457:g2636077]


[LN:BSUB0019] [AC:Z99122:AL009126] [GN:yvyE] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


19 of 21):from 3597091 to 3809700.] [NT:alternate gene name:yvhK; similar


to hypothetical] [SP:P32437] [LE:48723] [RE:49376] [DI:direct]


>gp:[GI:g1762328] [LN:BSU56901] [AC:U56901] [PN:Ycr59c/YigZ homolog]


[GN:yvhK] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


putative transcriptional regulator (yvhJ), Ycr59c/YigZ homolog (yvhK),


histidine kinase (degS), transcriptional regulator of degradation enzyme


(degU), (degV), (comFA), (comFB), (comFC), flagellar protein (yviB), negative


regulator of flagellin (flgM), flagellar protein (yviC), flagellar-hook


associated protein1 (flgK), flagellar-hook associated protein 3 (flgL),


(yviE), transmembrane protein (yviF), (csrA), flagellin (hag),


flagellar protein (yviH), flagellar hook-associated protein 2


(fliD), flagellar protein (fliS), flagellar protein (fliT), sigma-54 modulator


homolog (yviI), and (secA) genes, complete cds.] [LE:1217] [RE:1870]


[DI:complement] >gp:[GI:e1184457:g2636077] [LN:BSUB0019]


[AC:Z99122:AL009126] [GN:yvyE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept] [DE:Bacillus subtilis complete genome (section 19 of 21):from


3597091 to 3809700.] [NT:alternate gene name:yvhK; similar to hypothetical]


[SP:P32437] [LE:48723] [RE:49376] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_35945277_c3_1463
3573
7345
1065
354
1275
5.8e−130










Description


sp:[LN:RF2_BACSU] [AC:P28367:O34444] [GN:PRFB] [OR:BACILLUS SUBTILIS]


[DE:PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2)] [SP:P28367:O34444] [DB:swissprot]


>pir:[LN:JN0146] [AC:H69681:JN0146] [PN:translation releasing factor


RF-2:peptide chain release factor 2:prfB] [GN:prfB] [CL:translation


releasing factor] [OR:Bacillus subtilis] [DB:pir1]


>gp:[GI:e1184435:g2636055] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:peptide


chain release factor 2] [GN:prfB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 19 of 21):from 3597091 to


3809700.] [SP:P28367] [LE:29109:30139] [RE:30137:30210] [DI:complementJoin]


>gp:[GI:g2331287] [LN:AF013188] [AC:AF013188] [PN:release factor 2]


[GN:prfB] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


release factor 2 (prfB) gene, complete cds.] [NT:orf3; naturally occurring


frame-shift] [LE:75:148] [RE:146:1176] [DI:directJoin] >gp:[GI:g2618874]


[LN:AF017113] [AC:AF017113] [PN:putative peptide chain release factor RF-2]


[GN:prfB] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis


300–304 degree genomic sequence.] [LE:83:156] [RE:154:1184] [DI:directJoin]


>gp:[GI:e1184435:g2636055] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:peptide


chain release factor 2] [GN:prfB] [OR:Bacillus subtilis] [DB:genpept]


[DE:Bacillus subtilis complete genome (section 19 of 21):from 3597091 to


3809700.] [SP:P28367] [LE:29109:30139] [RE:30137:30210] [DI:complementJoin]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_35988961_f2_376
3574
7346
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36131311_c3_1455
3575
7347
696
231
194
2.1e−15










Description


gp:[GI:g451867] [LN:BACFLGMK] [AC:L14437] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain W168) [library:lambda gtWES library]


[DB:genpept-bct1] [DE:Bacillus subtilis (clones pDM116 and pDM113] flagellin


synthesis regulatory protein (flgM) and flagellar hook-filament


junction protein [flgK] genes and orf139, orf160, orfx, complete cds's.]


[NT:in Z18629, ORFX is called comForf3; ORFX; putative] [LE:<1] [RE:754]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36133385_c3_1377
3576
7348
681
226
203
2.3e−16










Description


pir:[LN:G69798] [AC:G69798] [PN:hypothetical protein yetJ] [GN:yetJ]


[CL:hypothetical protein yetJ] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182699:g2633033] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yetJ]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21):from 600701 to 813890.] [LE:186800]


[RE:187444] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36229676_c1_936
3577
7349
795
264
238
4.5e−20










Description


gp:[GI:g3172115] [LN:ACCPCAOP]


[AC:L05770:U04359:M33798:U20284:U11554:L13114:L03407] [PN:beta-ketoadipate


enol-lactone hydrolase] [GN:pcaD] [OR:Acinetobacter sp. ADP1]


[DB:genpept-bct2] [EC:3.1.1.24] [DE:Acinetobacter sp. ADP1 pca-qui-pob


supraoperonic cluster, complete sequence.] [NT:ELH] [LE:6843] [RE:7643]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36230252_c1_1000
3578
7350
777
258
480
1.0e−45










Description


pir:[LN:B69627] [AC:B69627] [PN:transcription repressor of fructose operon


fruR] [GN:fruR] [CL:regulatory protein gutR] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1185028:g2633809] [LN:BSUB0008] [AC:Z99111:AL009126]


[PN:transcriptional regulator (DeoR family)] [GN:fruR] [FN:negative


regulation of the fructose operon] OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:Bacillus subtilis complete genome (section 8 of 21):from 1394791 to


1603020.] [LE:112193] [RE:112948] [DI:direct] >gp:[GI:g3282123]


[LN:AF012285] [AC:AF012285:AF012284:U51911] [PN:FruR] [GN:fruR] [OR:Bacillus


subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis mobA-nprE gene region.]


[NT:similar to L. lactis lactose PTS system repressor,] [LE:12681]


[RE:13436] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36367302_c3_1330
3579
7351
564
187
122
2.7e−06










Description


sp:[LN:Y359_METJA] [AC:Q57805] [GN:MJ0359] [OR:METHANOCOCCUS JANNASCHII]


[DE:HYPOTHETICAL PROTEIN MJ0359] [SP:Q57805] [DB:swissprot] >pir:[LN:G64344]


[AC:G64344] [PN:hypothetical protein MJ0359] [OR:Methanococcus jannaschii]


[DB:pir2] [MP:REV327449-326805] >gp:[GI:g1591068] [LN:U67489]


[AC:U67489:L77117] [PN:M. jannaschii predicted coding region MJ0359]


[GN:MJ0359] [OR:Methanococcus jannaschii] [DB:genpept-bct2]


[DE:Methanococcus jannaschii section 31 of 150 of the complete genome.]


[NT:hypothetical protein; identified by GeneMark;] [LE:2497] [RE:3141]


[DI:complement]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_336563_c2_1302
3580
7352
1074
357
908
4.5e−91










Description


pir:[LN:D70020] [AC:D70020] [PN:ABC transporter (ATP-binding protein)


homolog yusC] [GN:yusC] [CL:ATP-binding cassette homology] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1184353:g2635771] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yusC] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to ABC transporter (ATP-binding


protein)] LE:165325] [RE:166350] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_36601562_c3_1403
3581
7353
1182
393
1669
1.0e−171










Description


sp:[LN:NORA_STAAU] [AC:P21191] [GN:NORA] [OR:STAPHYLOCOCCUS AUREUS]


[DE:QUINOLONE RESISTANCE NORA PROTEIN] [SP:P21191] [DB:swissprot]


>pir:[LN:A37838] [AC:A37838] [PN:norA protein] [OR:Staphylococcus aureus]


[DB:pir2] >gp:[GI:d1014850:g216975] [LN:STANORA] [AC:D90119] [PN:ORF for


norA] [GN:norA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain


TK2566) genomic DNA] [DB:genpept-bct1] [DE:S. aureus norA gene.] [LE:478]


[RE:1644] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_37927_f1_282
3582
7354
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_391527_f3_880
3583
7355
930
309
700
4.9e−69







Description


sp:[LN:TAGH_BACSU] [AC:P42954] [GN:TAGH] [OR:BACILLUS SUBTILIS] [DE:TEICHOIC


ACID TRANSLOCATION ATP-BINDING PROTEIN TAGH] [SP:P42954] [DB:swissprot]


>pir:[LN:S69203] [AC:S69203:A69721] [PN:teichoic acid translocation


ATP-binding protein tagH] [GN:tagH] [CL:ATP-binding cassette homology]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g755153] [LN:BSU13832] [AC:U13832]


[PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 168 highly


hydrophobic integral membrane protein[tagG] gene and ATP-binding protein


(tagH) gene, complete cds.] [LE:1134] [RE:2717] [DI:direct]


>gp:[GI:e1184476:g2636096] [LN:BSUB0019] [AC:Z99122:AL009126]


[PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid translocation]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete


genome (section 19 of 21):from 3597091 to 3809700.] [SP:P42954] [LE:75534]


[RE:77117] [DI:complement] >gp:[GI:e1184476:g2636096] [LN:BSUB0019]


[AC:Z99122:AL009126] [PN:ATP-binding protein] [GN:tagH] [FN:teichoic acid


translocation] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [SP:P42954]


[LE:75534] [RE:77117] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3922550_f1_67
3584
7356
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3928762_f2_369
3585
7357
1368
455
839
9.2e−84










Description


pir:[LN:B70007] [AC:B70007] [PN:Na+−transporting ATP synthase homolog yubG]


[GN:yubG] [CL:Na+−ATP synthase chain J] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1185983:g2635594] [LN:BSUB0016] [AC:Z99119:AL009126] [GN:yubG]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 16 of 21):from 2997771 to 3213410.] [NT:similar to


Na+−transporting ATP synthase] [LE:190389] [RE:191726] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3939218_c1_922
3586
7358
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3942263_c3_1381
3587
7359
726
241
913
1.3e−91










Description


pir:[LN:C69793] [AC:C69793] [PN:conserved hypothetical protein yeeI]


[GN:yeeI] [CL:hypothetical protein MG332] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182664:g2632998] [LN:BSUB0004] [AC:Z99107:AL009126] [GN:yeeI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 4 of 21):from 600701 to 813890.] [NT:similar to


hypothetical proteins] [LE:151216] [RE:151938] [DI:direct]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3944001_c1_1130
3588
7360
1524
507
684
2.4e−67










Description


pir:[LN:F70012] [AC:F70012] [PN:leucyl aminopeptidase homolog yuiE]


[GN:yuiE] [CL:cytosol aminopeptidase] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184284:g2635702] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yuiE]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


leucyl aminopeptidase] [LE:98474] [RE:99976] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3948587_f2_340
3589
7361
873
290
378
6.5e−35







Description


gp:[GI:g4980658] [LN:AE001701] [AC:AE001701:AE000512] [PN:conserved


hypothetical protein] [GN:TM0164] [OR:Thermotoga maritima] [DB:genpept-bct2]


[DE:Thermotoga maritima section 13 of 136 of the complete genome.]


[NT:similar to GB:AE000666 percent identity:61.11;] [LE:9393] [RE:10187]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3953452_c2_1201
3590
7362
507
168
328
1.3e−29










Description


pir:[LN:D69849] [AC:D69849] [PN:transcription regulation homolog yjdI]


[GN:yjdI] [CL:conserved hypothetical protein HI1434] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1183226:g2633560] [LN:BSUB0007] [AC:Z99110:AL009126]


[GN:yjdI] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 7 of 21):from 1194391 to 1411140.]


[NT:similar to transcription regulation] [LE:82766] [RE:83245] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3955067_c2_1278
3591
7363
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3959377_f3_886
3592
7364
126
41
149
1.7e−10










Description


gp:[GI:e255528:g1617429] [LN:SEABCTS] [AC:X99127] [PN:membrane protein]


[FN:iron repressible ABC transport system] [OR:Staphylococcus epidermidis]


[DB:genpept-bct1] [DE:S. epidermidis gene encoding ABC transport system.]


[LE:878] [RE:1624] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3962915_f2_507
3593
7365
627
208
139
1.1e−08










Description


pir:[LN:C71375] [AC:C71375] [PN:conserved hypothetical integral membrane


protein TP0033] [GN:TP0033] [OR:Treponema pallidum subsp. pallidum] [SR:,


syphilis spirochete] [DB:pir2] >gp:[GI:g3322288] [LN:AE001188]


[AC:AE001188:AE000520] [PN:conserved hypothetical integral membrane]


[GN:TP0033] [OR:Treponema pallidum] [DB:genpept-bct2] [DE:Treponema pallidum


section 4 of 87 of the complete genome.] [NT:similar to PID:1001613


PID:1001643 percent] [LE:7016] [RE:7627] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_39818_f2_530
3594
7366
240
79
234
1.2e−19










Description


gp:[GI:g1575061] [LN:SAU57060] [AC:U57060] [PN:ScdA] [GN:scdA]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus scdA


gene, complete cds.] [NT:S. aureus cells containing a scdA disruption have]


[LE:361] [RE:1035] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_3994027_f1_193
3595
7367
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4023518_f2_400
3596
7368
909
302
579
3.3e−56










Description


pir:[LN:G69800] [AC:G69800] [PN:cell-division inhibitor homolog yfhF]


[GN:yfhF] [CL:cell division inhibitor yfhF] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1182841:g2633175] [LN:BSUB0005] [AC:Z99108:AL009126]


[GN:yfhF] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 5 of 21):from 802821 to 1011250.]


[NT:similar to cell-division inhibitor] [LE:121320] [RE:122231]


[DI:complement] >gp:[GI:d1025388:g2804536] [LN:D85082] [AC:D85082] [PN:YfhF]


[OR:Bacillus subtilis] [SR:Bacillus subtilis DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA, genome sequence, 79 to 81 degree region.]


[LE:14211] [RE:15122] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4036093_c3_1384
3597
7369
864
287
461
1.0e−43










Description


pir:[LN:B69866] [AC:B69866] [PN:transcription regulator LysR family homolog


ykuM] [GN:ykuM] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181918:g2632234]


[LN:BS16829KB] [AC:AJ222587] [PN:YkuM protein] [GN:ykuM] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 29 kB DNA fragment from


ykwC gene to cse15 gene.] [NT:homologous to LysR type transcriptional


regulators] [LE:20403] [RE:21284] [DI:direct] >gp:[GI:e1185004:g2633785]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykuM] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to transcriptional regulator


(LysR family)] [LE:90659] [RE:91540] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4072006_f3_845
3598
7370
201
66





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4095055_f2_463
3599
7371
894
297
512
4.2e−49










Description


pir:[LN:B71256] [AC:B71256] [PN:conserved hypothetical integral membrane


protein TP0986] [GN:TP0986] [OR:Treponema pallidum subsp. pallidum] [SR:,


syphilis spirochete] [DB:pir2] >gp:[GI:g3323311] [LN:AE001266]


[AC:AE001266 :AE000520] [PN:conserved hypothetical integral membrane]


[GN:TP0986] [OR:Treponema pallidum] [DB:genpept-bct2] [DE:Treponema pallidum


section 82 of 87 of the complete genome.] [NT:similar to GB:AE000511


PID:2314395 percent] [LE:1967] [RE:2851] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4096093_c3_1496
3600
7372
354
117
155
2.8e−11










Description


pir:[LN:B42573] [AC:B42573] [PN:urf120] [OR:Paracoccus denitrificans]


[DB:pir2]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4100093_c3_1419
3601
7373
1161
386
489
1.1e−46










Description


pir:[LN:E64556] [AC:E64556] [PN:para-aminobenzoate synthetase]


[OR:Helicobacter pylori] [DB:pir2] >gp:[GI:g2313385] [LN:AE000547]


[AC:AE000547:AE000511] [PN:para-aminobenzoate synthetase (pabB)] [GN:HP0293]


[OR:Helicobacter pylori 26695] [DB:genpept-bct2] [DE:Helicobacter pylori


26695 section 25 of 134 of the complete genome.] [NT:similar to GB:K02673


SP:P05041 GB:U07748 GB:U07749] [LE:20379] [RE:22058] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4101643_c2_1314
3602
7374
399
132
304
4.5e−27










Description


pir:[LN:F70023] [AC:F70023] [PN:hypothetical protein yutD] [GN:yutD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184310:g2635728] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yutD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:121344] [RE:121652] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4103393_c2_1215
3603
7375
597
198
436
4.7e−41










Description


sp:[LN:PABA_SALTY] [AC:P06193] [GN:PABA] OR:SALMONELLA TYPHIMURIUM]


[EC:4.1.3.—] [DE:(EC 4.1.3.—) (ADC SYNTHASE)] [SP:P06193] [DB:swissprot]


>pir:[LN:S09636] [AC:S09636] [PN:pabA protein] [GN:pabA] [CL:glutamine


amidotransferase trpG homology] [OR:Salmonella typhimurium] [DB:pir2]


>gp:[GI:g47816] [LN:STPABA] [AC:X02603] [OR:Salmonella typhimurium]


[DB:genpept-bct1] [DE:Salmonella typhimurium pabA gene for


para-aminobenzoate synthase glutamine amidotransferase.] [NT:pabA gene


product (aa 1–187)] [SP:P06193] [LE:1] [RE:564] [DI:direct] >gp:[GI:g154228]


[LN:STYPABAA] [AC:M32355] [OR:Salmonella typhimurium] [SR:S. typhimurium DNA,


clone pSZD3] [DB:genpept-bct1] [DE:S. typhimurium glutamine amidotransferase


subunit of para-aminobenzoate synthase (pabA) and pot. cell division


proteinfic] genes, complete cds.] [NT:glutamine amidotransferase] [LE:970]


[RE:1533] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4110888_c3_1380
3604
7376
405
134
93
0.00010










Description


gp:[GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] [DE:Staphylococcus epidermidis staphylococcal accessory


regulator A homolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4111691_c1_1018
3605
7377
744
247
351
1.5e−31










Description


sp:[LN:YCSJ_BACSU] [AC:P42967] [GN:YCSJ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 63.8 KD PROTEIN IN SIPU-PBPC INTERGENIC REGION] [SP:P42967]


[DB:swissprot] >pir:[LN:G69765] [AC:G69765:I39898] [PN:allophanate


hydrolase homolog ycsJ:probable urea amidolyase] [GN:ycsJ] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:d1007939:g790943] [LN:BAC39R] [AC:D38161]


[PN:urea amidolyase] [OR:Bacillus subtilis] [SR:Bacillus subtilis


(strain:168TrpC2) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis genome around


39 degrees region encoding 17 ORFs, complete cds.] [LE:10358] [RE:12094]


[DI:direct] >gp:[GI:e1182375:g2632709] [LN:BSUB0003] [AC:Z99106:AL009126]


[GN:ycsJ] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 3 of 21):from 402751 to 611850.]


[NT:similar to allophanate hydrolase] [SP:P42967] [LE:56667] [RE:58403]


[DI:direct] >gp:[GI:d1009674:g1805477] [LN:D50453] [AC:D50453]


[PN:homologues to hypothetical protein HI1731 of H.] [GN:ycsJ] [OR:Bacillus


subtilis] [SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis DNA for 25–36 degree region containing theamyE-srfA


region, complete cds.] [LE:139065] [RE:140801] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4195817_c1_955
3606
7378
1743
580
2597
4.7e−270










Description


gp:[GI:e264711:g1262136] [LN:SAPBP4GEN] [AC:X91786] [PN:ATP-binding cassette


transporter A] [GN:abcA] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus abcA, pbp4, and tagD genes.] [LE:311] [RE:2038] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_42167_c1_959
3607
7379
834
277
1083
1.3e−109










Description


gp:[GI:g4928292] [LN:AF132117] [AC:AF132117] [PN:FhuA] [GN:fhuA]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


ferrichrome uptake operon, complete sequence and unknown genes.] [NT:ATP


binding protein.] [LE:2780] [RE:3514] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_422162_f3_795
3608
7380
456
151
439
2.2e−41










Description


pir:[LN:B69868] [AC:B69868] [PN:6-pyruvoyl tetrahydrobiopterin synthase


homolog ykvK] [GN:ykvK] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184963:g2633744] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvK]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to


6-pyruvoyl tetrahydrobiopterin synthase] [LE:44776] [RE:45225] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_422800_f3_903
3609
7381
447
148
627
2.7e−61










Description


gp:[GI:g3283053] [LN:AF054173] [AC:AF054173] [PN:staphylococcal accessory


regulator A homolog] [GN:sarA] [OR:Staphylococcus epidermidis]


[DB:genpept-bct2] DE:Staphylococcus epidermidis staphylococcal accessory


regulator A homolog (sarA) gene, complete cds.] [LE:887] [RE:1261]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_425927_f1_232
3610
7382
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_429675_f2_558
3611
7383
216
71





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4330390_c3_1517
3612
7384
876
291
787
3.0e−78










Description


pir:[LN:A70016] [AC:A70016] [PN:hypothetical protein yunF] [GN:yunF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184318:g2635736] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yunF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:127975] [RE:128829] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4351465_c2_1159
3613
7385
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4461693_f2_596
3614
7386
240
79





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4487588_f3_797
3615
7387
609
202
81
0.00094










Description


pir:[LN:B69478] [AC:B69478] [PN:NADH dehydrogenase (ubiquinone),, 43.2 kDa


subunit homolog] [OR:Archaeoglobus fulgidus] [EC:1.6.5.3] [DB:pir2]


>gp:[GI:g2648717] [LN:AE000976] [AC:AE000976:AE000782] [PN:F420H2:quinone


oxidoreductase, 43.2 kDa subunit,] [GN:AF1827] [OR:Archaeoglobus fulgidus]


[DB:genpept-bct2] [DE:Archaeoglobus fulgidus section 131 of 172 of the


complete genome.] [NT:similar to PID:882405 SP:P50973 percent identity:]


[LE:4241] [RE:5455] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4501250_c1_1097
3616
7388
1080
359
871
3.7e−87










Description


gp:[GI:d1020364:g1944409] [LN:D87026] [AC:D87026:D28136] [PN:membrane


protein] [OR:Bacillus stearothermophilus] [SR:Bacillus stearothermophilus


(strain:TRBE14) DNA] [DB:genpept-bct1] [DE:Bacillus stearothermophilus


glycogen operon genes, complete cds.] [NT:The ORF is similar to the


Alkaligenes eutrophus] [LE:144] [RE:1097] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4511550_c2_1247
3617
7389
1278
425
318
1.5e−28










Description


sp:[LN:YHAD_ECOLI] [AC:P23524] [GN:YHAD] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 39.1 KD PROTEIN IN RNPB-SOHA INTERGENIC REGION (ORF 3)]


[SP:P23524] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4535652_f1_255
3618
7390
225
74





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4539143_c1_1066
3619
7391
942
313
970
1.2e−97










Description


sp:[LN:HPRK_BACSU] [AC:O34483] [GN:PTSK] [OR:BACILLUS SUBTILIS] [EC:2.7.1.—]


[DE:HPR(SER) KINASE,] [SP:O34483] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4578956_f1_101
3620
7392
297
98
79
0.021










Description


gp:[GI:e1350598:g3881046] [LN:CEY51A2D] [AC:AL021497] [GN:Y51A2D.12]


[OR:Caenorhabditis elegans] [DB:genpept-inv1] [DE:Caenorhabditis elegans


cosmid Y51A2D, complete sequence.] [LE:83074:83534:84872]


[RE:83208:83768:84978] [DI:complementJoin]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4687843_c2_1324
3621
7393
330
109
242
1.7e−20










Description


pir:[LN:C70026] [AC:C70026] [PN:hypothetical protein yuzD] [GN:yuzD]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184300:g2635718] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yuzD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:112018] [RE:112344] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4689077_c2_1271
3622
7394
333
110
466
3.1e−44










Description


sp:[LN:CLPP_BACSU] [AC:P80244:O08433] [GN:CLPP] [OR:BACILLUS SUBTILIS]


[EC:3.4.21.92] [DE:(ENDOPEPTIDASE CLP) (CASEINOLYTIC PROTEASE) (PROTEASE


TI)] [SP:P80244:O08433] [DB:swissprot] >pir:[LN:B69601] [AC:B69601:A47683]


[PN:ATP-dependent clp proteinase, chain P:stress protein G7] CGN:clpP]


[CL:ATP-dependent Clp proteinase chain P] [OR:Bacillus subtilis]


[EC:3.4.21.—] [DB:pir2] >gp:[GI:e1186142:g2635967] [LN:BSUB0018]


[AC:Z99121:AL009126] [PN:ATP-dependent Clp protease proteolytic subunit]


[GN:clpP] [OR:Bacillus subtilis] [DB:genpept-bct1] [EC:3.4.21.92]


[DE:Bacillus subtilis complete genome (section 18 of 21):from 3399551 to


3609060.] [NT:alternate gene name:yvdN] [SP:P80244] [LE:145744] [RE:146337]


[DI:direct] >gp:[GI:e313044:g1945673] [LN:BSZ94043] [AC:Z94043]


[PN:hypothetical protein] [GN:yvdN] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment (88 kb).] [NT:similar to CLPP_ECOLI


ATP-dependent clp protease] [SP:P80244] [LE:35334] [RE:35927]


[DI:complement] >gp:[GI:g2668494] [LN:BSU59754] [AC:U59754] [PN:ClpP]


[GN:clpP] [OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis Clp


protease proteolytic component (clpP) gene, complete cds.] [NT:proteolytic


component of Clp protease] [LE:140] [RE:733] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4689130_f2_614
3623
7395
306
101
81
0.029










Description


pir:[LN:A58932] [AC:A58932] [PN:cytochrome C-type biogenesis protein CCMF]


[GN:yejR:ccmF] [OR:mitochondrion Cyanidioschyzon merolae] [DB:pir2]


>gp:[GI:d1037513:g4115789] [LN:D89861] [AC:D89861] [PN:cytochrome C-type


biogenesis protein CCMF] [GN:yejR or ccmF] [OR:Mitochondrion Cyanidioschyzon


merolae] [SR:Cyanidioschyzon merolae (strain:10D) mitochondrion DNA]


[DB:genpept-pln1] [DE:Cyanidioschyzon merolae mitochondrial DNA, complete


sequence.] [LE:16296] [RE:18158] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4695293_c3_1487
3624
7396
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4703180_c1_1041
3625
7397
453
150
541
3.5e−52










Description


gp:[GI:e1393149:g4490608] [LN:SAU133495] [AC:AJ133495] [PN:NRD1] [GN:nrd1]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus


ribonucleotide reductase operon.] [LE:138] [RE:536] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4709575_c2_1309
3626
7398
354
117





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4726462_f2_572
3627
7399
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4726527_f3_774
3628
7400
528
175
749
3.2e−74










Description


pir:[LN:D69868] [AC:D69868] [PN:conserved hypothetical protein ykvM]


[GN:ykvM] [CL:hypothetical protein ykvM] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184965:g2633746] [LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvM]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 8 of 21):from 1394791 to 1603020.] [NT:similar to


hypothetical proteins] [LE:45967] [RE:46464] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4773392_f2_359
3629
7401
288
95





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4775287_c3_1420
3630
7402
1008
335
238
1.3e−34










Description


sp:[LN:YBGK_ECOLI] [AC:P75745] [GN:YBGK] [OR:ESCHERICHIA COLI]


[DE:HYPOTHETICAL 34.4 KD PROTEIN IN PHRB-NEI INTERGENIC REGION] [SP:P75745]


[DB:swissprot] >pir:[LN:G64806] [AC:G64806] [PN:ybgK protein] [GN:ybgK]


[CL:hypothetical protein HI1730] [OR:Escherichia coli] [DB:pir2]


>gp:[GI:d1036362:g4062308] [LN:D90710] [AC:D90710:AB001340] [PN:Hypothetical


protein HI1730] [OR:Escherichia coli] [SR:Escherichia coli (strain:K12) DNA,


clone:Kohara clone #175] [DB:genpept-bct1] [DE:Escherichia coli genomic DNA.


(15.9–16.3 min).] [NT:ORF_ID:o175#7; similar to PIR Accession Number]


[LE:6967] [RE:7899] [DI:direct] >gp:[GI:g1786930] [LN:AE000174]


[AC:AE000174:U00096] [PN:putative carboxylase] [GN:ybgK] [FN:putative


enzyme; Not classified] [OR:Escherichia coli] [DB:genpept-bct2]


[DE:Escherichia coli K-12 MG1655 section 64 of 400 of the complete genome.]


[NT:o310; This 310 aa ORF is 48 pct identical (1 gap)] [LE:10112] [RE:11044]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_47763_f3_814
3631
7403
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4804643_f1_90
3632
7404
246
81
75
0.0026










Description


gp:[GI:e1332553:g3764009] [LN:PFMAL3P4] [AC:AL008970] [GN:MAL3P4.11]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv1] [DE:Plasmodium falciparum MAL3P4, complete sequence.]


[NT:predicted using hexExon; MAL3P4.11 (PFC0510w),] [LE:68636] [RE:71146]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4806575_c2_1171
3633
7405
651
216
503
3.7e−48










Description


pir:[LN:H69854] [AC:H69854] [PN:hypothetical protein ykaA] [GN:ykaA]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1181486:g2632006] [LN:BSAJ2571]


[AC:AJ002571] [PN:YkaA] [GN:ykaA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis 168 56 kb DNA fragment between xlyA


and ykoR.] [LE:2613] [RE:3230] [DI:complement] >gp:[GI:e1183305:g2633639]


[LN:BSUB0007] [AC:Z99110:AL009126] [GN:ykaA] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 7


of 21):from 1194391 to 1411140.] [LE:155562] [RE:156179] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4876077_f3_796
3634
7406
714
237
778
2.7e−77










Description


pir:[LN:C69868] [AC:C69868] [PN:coenzyme PQQ synthesis homolog ykvL]


[GN:ykvL] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184964:g2633745]


[LN:BSUB0008] [AC:Z99111:AL009126] [GN:ykvL] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 8


of 21):from 1394791 to 1603020.] [NT:similar to coenzyme PQQ synthesis]


[LE:45218] [RE:45949] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4885876_c1_1071
3635
7407
918
305
829
1.1e−82










Description


sp:[LN:YVCJ_BACSU] [AC:006973] [GN:YVCJ] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 33.9 KD PROTEIN IN CRH-TRXB INTERGENIC REGION] [SP:O06973]


[DB:swissprot] >pir:[LN:H70031] [AC:H70031] [PN:conserved hypothetical


protein yvcJ] [GN:yvcJ] [CL:Bacillus subtilis conserved hypothetical


protein yvcJ] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1186165:g2635990]


[LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvcJ] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


18 of 21):from 3399551 to 3609060.] [NT:similar to hypothetical proteins]


[SP:O06973] [LE:171011] [RE:171898] [DI:complement]


>gp:[GI:e313026:g1945650] [LN:BSZ94043] [AC:Z94043] [PN:hypothetical


protein] [GN:yvcJ] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:B. subtilis


genomic DNA fragment (88 kb).] [NT:similar to hypothetical MTCY21B4]


[SP:O06973] [LE:9773] [RE:10660] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4892878_c3_1357
3636
7408
1077
358
455
4.5e−43










Description


gp:[GI:g1913906] [LN:SAU91741] [AC:U91741] [PN:TagX] [GN:tagX] [FN:teichoic


acid biosynthesis] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:Staphylococcus aureus teichoic acid biosynthesis TagB gene, partial cds


and TagX and TagD genes, complete cds.] [LE:632] [RE:1471] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_4898376_f2_574
3637
7409
207
68
52
0.024










Description


gp:[GI:g4588017] [LN:AF087657] [AC:AF087657] [PN:NADH-ubiquinone


oxidoreductase chain 6] [GN:ND6] [OR:Mitochondrion Agrocybe aegerita]


[SR:Agrocybe aegerita] [DB:genpept-pln2] [DE:Agrocybe aegerita


NADH-ubiquinone oxidoreductase chain 6 (ND6)gene, mitochondrial gene


encoding mitochondrial protein, complete cds.] [NT:NADH dehydrogenase]


[LE:34] [RE:453] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5084652_f3_849
3638
7410
507
168
536
1.2e−51










Description


gp:[GI:g1575061] [LN:SAU57060] [AC:U57060] [PN:ScdA] [GN:scdA]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:Staphylococcus aureus scdA


gene, complete cds.] [NT:S. aureus cells containing a scdA disruption have]


[LE:361] [RE:1035] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5117793_c3_1531
3639
7411
273
91
197
9.9e−16










Description


sp:[LN:YRN3_VIBPA] [AC:P46231] [OR:VIBRIO PARAHAEMOLYTICUS] [DE:HYPOTHETICAL


PROTEIN IN RNT 5′REGION (ORF3) (FRAGMENT)] [SP:P46231] [DB:swissprot]


>gp:[GI:g497126] [LN:VPU06949] [AC:U06949] [PN:ORF3] [OR:Vibrio


parahaemolyticus] [DB:genpept-bct1] [DE:Vibrio parahaemolyticus BB22 RNase T


(rnt) gene and flagellar motor component (motY) gene, complete cds.] [LE:<1]


[RE:420] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5131265_c2_1243
3640
7412
276
91
80
0.0071










Description


gp:[GI:g3582235] [LN:AE001272] [AC:AE001272] [PN:L. lactis predicted coding


region ORF00014] [GN:ORF00014] [OR:Lactococcus lactis] [DB:genpept-bct2]


[DE:Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence.]


[NT:hypothetical protein; identified by GeneMark;] [LE:10983] [RE:11600]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5182962_f1_196
3641
7413
1068
355
295
1.3e−30










Description


sp:[LN:RESE_BACSU] [AC:P35164] [GN:RESE] [OR:BACILLUS SUBTILIS] EC:2.7.3.—]


[DE:SENSOR PROTEIN RESE,] [SP:P35164] [DB:swissprot] >pir:[LN:H69691]


[AC:H69691:S45560] [PN:two-component sensor histidine kinase resE] [GN:resE]


[CL:sensor histidine kinase homology] [:OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g410142] [LN:BACDIA] [AC:L09228] [OR:Bacillus subtilis] [SR:Bacillus


subtilis (strain 168, sub_species Marburg) DNA] [DB:genpept-bct1]


[DE:Bacillus subtilis spoVA to serA region.] [NT:ORFX18] [LE:22425]


[RE:24194] [DI:direct] >gp:[GI:e1185580:g2634746] [LN:BSUB0013]


[AC:Z99116:AL009126] [PN:two-component sensor histidine kinase] [GN:resE]


[FN:involved in global regulation of aerobic and] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 13 of 21):


from 2395261 to 2613730.] [NT:alternate gene name:ypxE] [SP:P35164]


[LE:19389] [RE:21158] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5195393_c3_1352
3642
7414
654
217
1088
3.8e−110










Description


gp:[GI:e255543:g1617434] [LN:SESIRR] [AC:X99128] [PN:putative iron dependant


repressor] [GN:sirR] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:S. epidermidis sirR gene.] [LE:14] [RE:658] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5276677_c1_1026
3643
7415
1566
521
703
2.4e−69










Description


pir:[LN:B64622] [AC:B64622] [PN:osmoprotection protein] [OR:Helicobacter


pylori] [DB:pir2] >gp:[GI:g2313949] [LN:AE000593] [AC:AE000593:AE000511]


[PN:osmoprotection protein (proWX)] [GN:HP0818] [OR:Helicobacter pylori


26695] [DB:genpept-bct2] [DE:Helicobacter pylori 26695 section 71 of 134 of


the complete genome.] [NT:similar to PID:1109685 SP:Q45461 GB:AL009126]


[LE:4862] [RE:6523] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5283592_f1_215
3644
7416
288
95
73
0.014










Description


gp:[GI:g1054677] [LN:CCCOX3] [AC:X92734] [PN:cytochrome oxidase] [GN:coxIII]


[OR:Mitochondrion Chara corallina] [SR:Chara corallina] [DB:genpept-pln1]


[DE:C. corallina mitochondrial cox3 gene.] [NT:subunit III] [LE:<1] [RE:>381]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5292175_c3_1484
3645
7417
1323
440
2112
1.2e−218










Description


gp:[GI:g3152725] [LN:AF065394] [AC:AF065394] [PN:enolase] [GN:eno]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


enolase (eno) gene, complete cds.] [NT:ENO; laminin binding protein]


[LE:103] [RE:1407] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_53552_f2_450
3646
7418
660
219
179
8.0e−14










Description


sp:[LN:GRPB_BACFI] [AC:Q45133] [GN:GRPB] [OR:BACILLUS FIRMUS]


[DE:GLUTAMATE-RICH PROTEIN GRPB] [SP:Q45133] [DB:swissprot]


>gp:[GI:g1209681] [LN:BFU39410] [AC:U39410] [PN:glutamate-rich protein]


[GN:grpB] [OR:Bacillus firmus] [SR:Bacillus firmus strain=OF4]


[DB:genpept-bct1] [DE:Bacillus firmus OrfA, OrfB, glutamate-rich protein


(grpA), OrfC, and glutamate-rich protein (grpB) genes, complete cds.]


[LE:2695] [RE:3219] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5355325_c3_1454
3647
7419
888
295
526
1.4e−50










Description


sp:[LN:DEGV_BACSU] [AC:P32436] [GN:DEGV] [OR:BACILLUS SUBTILIS] [DE:DEGV


PROTEIN] [SP:P32436] [DB:swissprot] >pir:[LN:D30191]


[AC:I40386:D30191:A70042:S28596] [PN:conserved hypothetical protein yviA]


[GN:yviA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:g39848] [LN:BSCOMFG]


[AC:Z18629] [PN:U3] [GN:degUorf3] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis comF gene.] [SP:P32436] [LE:1] [RE:846] [DI:direct]


>gp:[GI:e1184454:g2636074] [LN:BSUB0019] [AC:Z99122:AL009126] [GN:yviA]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 19 of 21):from 3597091 to 3809700.] [NT:alternate


gene name:degV, sacU; similar to] [LE:45634] [RE:46479] [DI:complement]


>gp:[GI:g1762331] [LN:BSU56901] [AC:U56901] [GN:degV] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis putative transcriptional regulator


(yvhJ), Ycr59c/YigZ homolog (yvhK), histidine kinase


(degS), transcriptional regulator of degradation enzyme (degU), (degV),


(comFA), (comFB), (comFC), flagellar protein (yviB), negative regulator of


flagellin (flgM), flagellar protein (yviC), flagellar-hook associated


protein1 (flgK), flagellar-hook associated protein 3 (flgL),


(yviE), transmembrane protein (yviF), (csrA), flagellin (hag),


flagellar protein (yviH), flagellar hook-associated protein 2


(fliD), flagellar protein (fliS), flagellar protein (fliT), sigma-54 modulator


homolog (yviI), and (secA) genes, complete cds.] [LE:4114] [RE:4959]


[DI:direct] >gp:[GI:e1184454:g2636074] [LN:BSUB0019] [AC:Z99122:AL009126]


[GN:yviA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept] [DE:Bacillus


subtilis complete genome (section 19 of 21):from 3597091 to 3809700.]


[NT:alternate gene name:degV, sacU; similar to] [SP:P32436] [LE:45634]


[RE:46479] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5367843_c3_1488
3648
7420
759
252
791
1.1e−78










Description


sp:[LN:EST_BACST] [AC:Q06174] [GN:EST] [OR:BACILLUS STEAROTHERMOPHILUS]


[EC:3.1.1.1] [DE:CARBOXYLESTERASE PRECURSOR,] [SP:Q06174] [DB:swissprot]


>pir:[LN:JC1374] [AC:JC1374] [PN:carboxylesterase,] [GN:Est] [OR:Bacillus


stearothermophilus] [EC:3.1.1.1] [DB:pir2] >gp:[GI:d1002674:g216314]


[LN:BACPBH7] [AC:D12681] [PN:esterase] [OR:Bacillus stearothermophilus]


[SR:Bacillus stearothermophilus DNA, clone pBH7] [DB:genpept-bct1]


[DE:Bacillus stearothermophilus esterase gene.] [LE:181] [RE:924]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_57800_c3_1494
3649
7421
147
48





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5869433_f2_542
3650
7422
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5869702_f2_595
3651
7423
309
102
87
0.015










Description


sp:[LN:YMW6_YEAST] [AC:Q04264:Q04780] [GN:YMR076C:YM9582.01C:YM9916.15C]


[OR:SACCHAROMYCES CEREVISIAE] [SR:,BAKER'S YEAST] [DE:HYPOTHETICAL 147.0 KD


PROTEIN IN ABF2-CHL12 INTERGENIC REGION] [SP:Q04264:Q04780] [DB:swissprot]


>pir:[LN:554451] [AC:554451:552836] [PN:hypothetical protein


YMR076c:hypothetical protein YM9582.01c:hypothetical protein YM9916.15c]


[GN:PDS5] [OR:Saccharomyces cerevisiae] [DB:pir2] [MP:13R]













ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_5938762_c1_987
3652
7424
1704
567
566
7.8e−55










Description


sp:[LN:CYDD_HAEIN] [AC:P45082] [GN:CYDD:HI1157] [OR:HAEMOPHILUS INFLUENZAE]


[DE:TRANSPORT ATP-BINDING PROTEIN CYDD] [SP:P45082] [DB:swissprot]


>pir:[LN:F64186] [AC:F64186] [PN:ABC-type transport protein cydD] [GN:cydD]


[CL:unassigned ATP-binding cassette proteins:ATP-binding cassette


homology] [OR:Haemophilus influenzae] [DB:pir2] >gp:[GI:g1574714]


[LN:U32795] [AC:U32795:L42023] [PN:ATP-binding protein protein (cydD)]


[GN:HI1157] [OR:Haemophilus influenzae Rd] [DB:genpept-bct2] [DE:Haemophilus


influenzae Rd section 110 of 163 of the complete genome.] [NT:similar to


GB:L21749 SP:P29018 GB:L25859 PID:146416] [LE:6353] [RE:8113]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6023915_c2_1313
3653
7425
969
322
1144
4.4e−116










Description


pir:[LN:D70023] [AC:D70023 ] [PN:lipoic acid synthetase, yutB] [GN:yutB]


[CL:lipoic acid synthase] [OR:Bacillus subtilis] [EC:2.8.1.—] [DB:pir2]


>gp:[GI:e1184312:g2635730] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yutB]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


lipoic acid synthetase] [LE:122382] [RE:123188] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6037756_f3_682
3654
7426
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6050010_f1_177
3655
7427
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6051500_c1_972
3656
7428
189
62





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6051537_c1_1063
3657
7429
276
91
112
1.0e−06










Description


sp:[LN:CSBA_BACSU] [AC:P37953] [GN:CSBA] [OR:BACILLUS SUBTILIS] [DE:CSBA


PROTEIN] [SP:P37953] [DB:swissprot] >gp:[GI:g142780] [LN:BACCSBA]


[AC:M80473] [GN:csbA] [OR:Bacillus subtilis] [SR:Bacillus subtilis (strain


168, sub_species Marburg) DNA] [DB:genpept-bct1] [DE:Bacillus subtilis csbA


and uvr/dinA genes, complete cds.] [NT:putative membrane protein; putative]


[LE:380] [RE:610] [DI:direct] >gp:[GI:g142842] [LN:BACDINA76] [AC:M64048]


[PN:DNase inhibitor] [GN:dinA] [OR:Bacillus subtilis] [SR:Bacillus subtilis


DNA] [DB:genpept-bct1] [DE:Bacillus subtilis DNase inhibitor (dinA76) gene,


complete cds and promoter region.] [LE:64] [RE:294] [DI:direct]


>gp:[GI:e1184424:g2636044] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:putative


membrane protein] [GN:csbA] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 19 of 21):


from 3597091 to 3809700.] [SP:P37953] [LE:17086] [RE:17316] [DI:complement]


>gp:[GI:g2618840] [LN:AF017113] [AC:AF017113] [PN:CsbA] [GN:csbA]


[OR:Bacillus subtilis] [DB:genpept-bct2] [DE:Bacillus subtilis 300–304


degree genomic sequence.] [LE:12977] [RE:13207] [DI:direct]


>gp:[GI:e1184424:g2636044] [LN:BSUB0019] [AC:Z99122:AL009126] [PN:putative


membrane protein] [GN:csbA] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept]


[DE:Bacillus subtilis complete genome (section 19 of 21):from 3597091 to


3809700.] [SP:P37953] [LE:17086] [RE:17316] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6053176_f1_195
3658
7430
519
172





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6056628_c3_1339
3659
7431
150
49





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6057338_c3_1518
3660
7432
840
279
622
9.1e−61










Description


pir:[LN:H70015] [AC:H70015] [PN:hypothetical protein yunE] [GN:yunE]


OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184317:g2635735] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yunE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:127136] [RE:127957] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6094177_c2_1235
3661
7433
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6101581_f1_74
3662
7434
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6257763_c3_1479
3663
7435
660
219
189
1.7e−13










Description


gp:[GI:g2246532] [LN:U93872] [AC:U93872] [OR:Kaposi's sarcoma-associated


herpesvirus] [SR:Kaposi's sarcoma-associated herpesvirus - Human herpesvirus


8] [DB:genpept-vrl] [DE:Kaposi's sarcoma-associated herpesvirus glycoprotein


M, DNA replication protein, glycoprotein, DNA replication protein,


FLICE inhibitory protein and v-cyclin genes, complete cds, and


tegument protein gene, partial cds.] [NT:ORF 73, contains large complex


repeat CR 73] [LE:124324] [RE:127593] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_626592_c1_935
3664
7436
852
283
233
1.5e−19










Description


pir:[LN:A69463] [AC:A69463] [PN:2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic


acid hydrolase (pcbD) homolog] [OR:Archaeoglobus fulgidus] [DB:pir2]


>gp:[GI:g2648849] [LN:AE000986] [AC:AE000986:AE000782]


[PN:2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid] [GN:AF1706]


[OR:Archaeoglobus fulgidus] [DB:genpept-bct2] [DE:Archaeoglobus fulgidus


section 121 of 172 of the complete genome.] [NT:similar to GP:1395174


percent identity:29.41;] [LE:11775] [RE:12491] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6423376_f3_670
3665
7437
261
86





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6437525_f3_862
3666
7438
294
97





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6440640_c3_1379
3667
7439
1278
425
139
6.0e−06










Description


pir:[LN:D71621] [AC:D71621] [PN:hypothetical protein PFB0185w] [GN:PFB0185w]


[OR:Plasmodium falciparum] [DB:pir2] >gp:[GI:g3845117] [LN:AE001378]


[AC:AE001378:AE001362] [PN:hypothetical protein] [GN:PFB0185w]


[OR:Plasmodium falciparum] [SR:malaria parasite P. falciparum]


[DB:genpept-inv2] [DE:Plasmodium falciparum chromosome 2, section 15 of 73


of the complete sequence.] [NT:predicted by GlimmerM] [LE:6504:8652]


[RE:8473:9075] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6444037_c2_1180
3668
7440
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6642827_c3_1342
3669
7441
2403
800
1527
1.1e−156










Description


pir:[LN:A70010] [AC:A70010] [PN:NADH dehydrogenase homolog yufT] [GN:yufT]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184238:g2635656] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yufT] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to NADH dehydrogenase] [LE:48758]


[RE:51082] [DI:direct] >gp:[GI:e311455:g1934817] [LN:BSZ93937] [AC:Z93937]


[PN:unknown] [GN:yufT] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment from yufK to yufV.] [NT:potential Na/H


antiporter/phaA homologue/NADH] [LE:10546] [RE:12870] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6650312_f2_600
3670
7442
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6675016_c1_1077
3671
7443
132
43





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6680312_f2_518
3672
7444
714
237
211
4.7e−17










Description


gp:[GI:g3329623] [LN:CELF36H12] [AC:AF078790] [GN:F36H12.3]


[OR:Caenorhabditis elegans] [DB:genpept-inv2] [DE:Caenorhabditis elegans


cosmid F36H12.] [NT:coded for by C. elegans cDNA CEMSF30F]


[LE:21606:21872:22500:22677] [RE:21701:22454:22629:22875] [DI:directJoin]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6681577_c1_1110
3673
7445
432
143
277
3.3e−24










Description


pir:[LN:G70020] [AC:G70020] [PN:hypothetical protein yusF] [GN:yusF]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184356:g2635774] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yusF] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [LE:167450] [RE:167890] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6695968_c2_1320
3674
7446
1470
489
2005
2.5e−207










Description


gp:[GI:g4530241] [LN:AF101234] [AC:AF101234] [PN:D-alanine-D-alanyl carrier


protein ligase DltA] [GN:dltA] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus dltABCD operon, complete sequence; and unknown


gene.] [LE:1590] [RE:3047] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6822175_c2_1222
3675
7447
1914
637
1229
4.3e−125










Description


pir:[LN:F69901] [AC:F69901] [PN:DNA helicase recQ:ATP-dependent DNA


helicase homolog yocI] [GN:yocI] [CL:recQ protein:DEAD/H box helicase


homology:recQ helicase homology] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:g2619051] [LN:AF027868] [AC:AF027868] [PN:RecQ homolog] [GN:yocI]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis chromosome


region between terC and odhAB.] [NT:similar to E. coli RecQ protein (607 aa)]


[LE:74004] [RE:75779] [DI:complement] >gp:[GI:e1185394:g2634315]


[LN:BSUB0011] [AC:Z99114:AL009126] [GN:yocI] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


11 of 21):from 2000171 to 2207900.] [NT:similar to ATP-dependent DNA


helicase] [LE:93095] [RE:94870] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6823453_c3_1346
3676
7448
483
160
270
1.8e−23










Description


gp:[GI:d1036085:g4001729] [LN:AB015981] [AC:AB015981] [PN:MnhE] [GN:mnhE]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (strain:209P) DNA]


[DB:genpept-bct1] [DE:Staphylococcus aureus genes for OrfA, MnhA, MnhB,


MnhC, MnhD, MnhE, MnhF and MnhG, complete cds.] [LE:5474] [RE:5953]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6829638_c3_1402
3677
7449
186
61





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6833313_c3_1371
3678
7450
1920
639
550
3.9e−53










Description


pir:[LN:B70001] [AC:B70001] [PN:ABC transporter (permease) homolog ytsD]


[GN:ytsD] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185910:g2635521]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:ytsD] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21):from 2997771 to 3213410.] [NT:similar to ABC transporter


(permease)] [LE:110708] [RE:112648] [DI:complement] >gp:[GI:g2293178]


[LN:AF008220] [AC:AF008220] [PN:YtsD] [GN:ytsD] [OR:Bacillus subtilis]


[DB:genpept-bct2] [DE:Bacillus subtilis rrnB-dnaB genomic region.]


[NT:similarity to NADH dehydrogenase] [LE:67779] [RE:69719] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6836088_c1_1118
3679
7451
1320
439
1260
2.2e−128










Description


pir:[LN:G70019] [AC:G70019] [PN:conserved hypothetical protein yurX]


[GN:yurX] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184348:g2635766]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yurX] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to hypothetical proteins]


[LE:160723] [RE:162036] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_6929512_c1_1119
3680
7452
1416
471
2098
3.6e−217










Description


pir:[LN:D70019] [AC:D70019] [PN:conserved hypothetical protein yurU]


[GN:yurU] [CL:Methanobacterium thermoautotrophicum ABC transporter chain


Ycf24] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184345:g2635763]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yurU] [FN:unknown] [OR:Bacillus


subtilis] DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to hypothetical proteins]


[LE:157652] [RE:159049] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_7042878_f1_40
3681
7453
177
58





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_7239188_f2_519
3682
7454
675
224
491
6.9e−47










Description


pir:[LN:D70033] [AC:D70033] [PN:conserved hypothetical protein yvdD]


[GN:yvdD] [CL:yeast conserved hypothetical protein YJL055w] [OR:Bacillus


subtilis] [DB:pir2] >gp:[GI:e1186152:g2635977] [LN:BSUB0018]


[AC:Z99121:AL009126] [GN:yvdD] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 18 of 21):


from 3399551 to 3609060.] [NT:similar to hypothetical proteins] [LE:158450]


[RE:159025] [DI:complement] >gp:[GI:e313036:g1945663] [LN:BSZ94043]


[AC:Z94043] [PN:hypothetical protein] [GN:yvdD] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:B. subtilis genomic DNA fragment (88 kb).] [NT:similar


to YJF5_YEAST hypothetical 26.9 kd protein] [LE:22646] [RE:23221]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_7800_c1_1093
3683
7455
198
65
54
0.033










Description


gp:[GI:g3789915] [LN:AF083442] [AC:AF083442] [PN:G protein-coupled receptor


G2A] [OR:Mus musculus] [SR:house mouse] [DB:genpept-rod] [DE:Mus musculus G


protein-coupled receptor G2A mRNA, complete cds.] [LE:147] [RE:1295]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_781415_c3_1393
3684
7456
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_783375_c2_1236
3685
7457
180
59





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_788950_c3_1347
3686
7458
531
176
219
4.6e−18










Description


pir:[LN:E70008] [AC:E70008 ] [PN:conserved hypothetical protein yufB]


[GN:yufB] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184243:g2635661]


[LN:BSUB0017] [AC:Z99120:AL009126] [GN:yufB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


17 of 21):from 3197001 to 3414420.] [NT:similar to hypothetical proteins]


[LE:54068] [RE:54442] [DI:direct] >gp:[GI:e311512:g1934774] [LN:BSZ93932]


[AC:Z93932] [PN:unknown] [GN:yufB] [OR:Bacillus subtilis] [DB:genpept-bct1]


[DE:B. subtilis genomic DNA fragment from yufA to yufE.] [LE:7086] [RE:7460]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_821963_c2_1165
3687
7459
546
181
103
0.0018










Description


gp:[GI:g4731376] [LN:AF135127] [AC:AF135127:AF047896] [PN:isoflavone


reductase homolog Bet v 5] [GN:BETV5] [OR:Betula pendula] [SR:European white


birch] [DB:genpept-pln2] [DE:Betula pendula isoflavone reductase homolog Bet


V 5 (BETV5) mRNA, partial cds.] [NT:allergen; IgE binding protein] [LE:1]


[RE:>900] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_822777_c3_1397
3688
7460
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_870300_c1_958
3689
7461
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_899177_c3_1335
3690
7462
930
309
596
5.2e−58










Description


pir:[LN:G70046] [AC:G70046] [PN:iron-binding protein homolog yvrC] [GN:yvrC]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1249807:g2832811] [LN:BS43KBDNA]


[AC:AJ223978] [PN:putative metal binding protein, YvrC] [GN:yvrC]


[OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis 42.7 kB DNA


fragment from yvsA to yvqA.] [LE:23792] [RE:24736] [DI:direct]


>gp:[GI:e1184397:g2635815] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yvrC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


iron-binding protein] [LE:205551] [RE:206495] [DI:complement]


>gp:[GI:e1186006:g2635831] [LN:BSUB0018] [AC:Z99121:AL009126] [GN:yvrC]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 18 of 21):from 3399551 to 3609060.] [NT:similar to


iron-binding protein] [LE:3001] [RE:3945] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_900256_c1_1017
3691
7463
210
69





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_959437_c1_965
3692
7464
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_9642_f1_227
3693
7465
876
291
769
2.4e−76










Description


pir:[LN:E70006] [AC:E70006] [PN:probable bacitracin resistance protein


(undecapreno) yubB] [GN:yubB] [CL:Escherichia coli bacitracin resistance


protein bacA] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1185988:g2635599]


[LN:BSUB0016] [AC:Z99119:AL009126] [GN:yubB] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section


16 of 21):from 2997771 to 3213410.] [NT:similar to bacitracin resistance


protein] [LE:195935] [RE:196765] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_969075_c1_1109
3694
7466
354
117
359
6.7e−33










Description


pir:[LN:B70021] [AC:B70021] [PN:arsenate reductase homolog yusI] [GN:yusI]


[CL:hypothetical protein yjbD] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1184359:g2635777] [LN:BSUB0017] [AC:Z99120:AL009126] [GN:yusI]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 17 of 21):from 3197001 to 3414420.] [NT:similar to


arsenate reductase] [LE:168632] [RE:168988] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_969555_f1_218
3695
7467
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_969812_f1_63
3696
7468
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_970327_c2_1301
3697
7469
297
98
167
1.5e−12










Description


pir:[LN:F70020] [AC:F70020] [PU:thioredoxin homolog yusE] [GN:yusE]


[OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1184355:g2635773] [LN:BSUB0017]


[AC:Z99120:AL009126] [GN:yusE] [FN:unknown] [OR:Bacillus subtilis]


[DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 17 of 21):


from 3197001 to 3414420.] [NT:similar to thioredoxin] [LE:167128] [RE:167448]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_973400_f3_690
3698
7470
180
59
43
0.013










Description


gp:[GI:e1363550:g4127809] [LN:EFAJ3161] [AC:AJ223161] [PN:hypothetical


protein] [GN:orf6] [OR:Enterococcus faecalis] [DB:genpept-bct1]


[DE:Enterococcus faecalis plasmid pS86, rep86 and mob86 genes.] [LE:4421]


[RE:4732] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_978426_c1_1043
3699
7471
978
325
1338
1.2e−136










Description


gp:[GI:e1330452:g3724155] [LN:SAA005352] [AC:AJ005352] [PN:membrane protein]


[GN:sstA] [FN:iron transport protein] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:Staphylococcus aureus, Sst putative iron transport


operon.] [LE:273] [RE:1245] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_9882950_c2_1204
3700
7472
1350
449
1090
2.3e−110










Description


sp:[LN:YHDP_BACSU] [AC:O07585] [GN:YHDP] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 49.9 KD PROTEIN IN CITA-SSPB INTERGENIC REGION] [SP:O07585]


[DB:swissprot] >pir:[LN:F69826] [AC:F69826] [PN:hemolysin homolog yhdP]


[GN:yhdP] [CL:hypothetical protein HI0107] [OR:Bacillus subtilis] [DB:pir2]


>gp:[GI:e1182956:g2633290] [LN:BSUB0006] [AC:Z99109:AL009126] [GN:yhdP]


[FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis


complete genome (section 6 of 21):from 999501 to 1209940.] [NT:similar to


hemolysin] [SP:O07585] [LE:32043] [RE:33377] [DI:complement]


>gp:[GI:e1191881:g2226211] [LN:BSY14082] [AC:Y14082] [PN:hypothetical


protein] [GN:yhdP] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis chromosomal DNA, region 72 to 75 degrees:spoVR to sspB.]


[NT:Similarity to yhdT, this submission, and to] [SP:O07585] [LE:18691]


[RE:20025] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_9884625_f2_464
3701
7473
1509
502
1226
9.0e−125










Description


sp:[LN:YCLF_BACSU] [AC:P94408] [GN:YCLF] [OR:BACILLUS SUBTILIS]


[DE:HYPOTHETICAL 53.3 KD PROTEIN IN SFP-GERKA INTERGENIC REGION] [SP:P94408]


[DB:swissprot] >pir:[LN:C69762] [AC:C69762] [PN:di-tripeptide ABC


transporter (membrane pr) homolog yclF] [GN:yclF] [CL:peptide transporter


protein] [OR:Bacillus subtilis] [DB:pir2] >gp:[GI:e1182334:g2632668]


[LN:BSUB0003] [AC:Z99106:AL009126] [GN:yclF] [FN:unknown] [OR:Bacillus


subtilis] [DB:genpept-bct1] [DE:Bacillus subtilis complete genome (section 3


of 21):from 402751 to 611850.] [NT:similar to di-tripeptide ABC transporter


(membrane] [SP:P94408] [LE:13065] [RE:14543] [DI:complement]


>gp:[GI:d1009635:g1805438] [LN:D50453] [AC:D50453] [PN:homologue of


Di-tripeptide transporter Dtp of L.] [GN:yclF] [OR:Bacillus subtilis]


[SR:Bacillus subtilis (strain:168 trpC2) DNA] [DB:genpept-bct1] [DE:Bacillus


subtilis DNA for 25–36 degree region containing theamyE-srfA region,


complete cds.] [LE:95468] [RE:96946] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503001001_989010_c1_1128
3702
7474
408
135
371
3.6e−34










Description


pir:[LN:G70024] [AC:G70024] [PN:conserved hypothetical protein yutM]


[GN:yutM] [CL:conserved hypothetical protein HI0376] [OR:Bacillus subtilis]


[DB:pir2] >gp:[GI:e1184295:g2635713] [LN:BSUB0017] [AC:Z99120:AL009126]


[GN:yutM] [FN:unknown] [OR:Bacillus subtilis] [DB:genpept-bct1] [DE:Bacillus


subtilis complete genome (section 17 of 21):from 3197001 to 3414420.]


[NT:similar to hypothetical proteins] [LE:107656] [RE:108018]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_11291_c2_183
3703
7475
153
50





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_1369012_c2_207
3704
7476
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_13790943_c1_161
3705
7477
1644
547
2797
3.0e−291










Description


pir:[LN:C56976] [AC:C56976] [PN:transfer complex protein TrsK] [GN:trsK]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310618] [LN:STATRSC]


[AC:L11998] [GN:trsK] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:10475]


[RE:12115] [DI:direct] >gp:[GI:g3676445] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative membrane protein TraK] [GN:traK] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [NT:similar to transfer-associated proteins of] [LE:34078]


[RE:35718] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_14507827_c3_220
3706
7478
168
55
273
8.7e−24










Description


pir:[LN:F56976] [AC:F56976] [PN:transfer complex protein TrsO′]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g3676448] [LN:AF051917]


[AC:AF051917:L19570] [PN:unknown] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [NT:Orf55; possibly truncated by 1S257 transposon] [LE:37179]


[RE:37346] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_14844187_c2_195
3707
7479
3081
1026
5411
0.0










Description


sp:[LN:SYIP_STAAU] [AC:P41368] [GN:MUPR] [OR:STAPHYLOCOCCUS AUREUS]


[EC:6.1.1.5] [DE:(ISOLEUCINE--TRNA LIGASE) (ILERS) (MUPIROCIN RESISTANCE


PROTEIN)] [SP:P41368] [DB:swissprot] >gp:[GI:g581558] [LN:SADNAMUPR]


[AC:X75439] [PN:isoleucyl tRNA synthetase] [GN:ileS] [OR:Staphylococcus


aureus] [DB:genpept-bct1] [DE:S. aureus plasmid encoded DNA, mup R gene.]


[SP:P41368] [LE:477] [RE:3551] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_15631901_c3_234
3708
7480
645
214
943
8.8e−95










Description


gp:[GI:g3676416] [LN:AF051917] [AC:AF051917:L19570] [PN:putative resolvase


Res] [GN:res] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:2779]


[RE:3336] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_156910_f2_62
3709
7481
483
160
729
4.2e−72










Description


gp:[GI:g3676415] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf149] [LE:2068] [RE:2484]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_19625062_c3_225
3710
7482
165
54





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_19665885_c1_175
3711
7483
1728
575
2999
0.0










Description


gp:[GI:g3676419] [LN:AF051917] [AC:AF051917:L19570] [PN:LtrC-like protein]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf575; similar to Lactococcus lactis


pRS01 LtrC] [LE:6350] [RE:8074] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_19744010_c3_232
3712
7484
288
95
466
3.1e−44










Description


gp:[GI:g3676414] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf423] [LE:755] [RE:2026]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_2115625_f2_61
3713
7485
195
64





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_2150037_c1_180
3714
7486
336
111
464
5.0e−44










Description


gp:[GI:g3676421] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf90] [LE:10316] [RE:10588]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_21754035_f3_110
3715
7487
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23468753_c3_236
3716
7488
1647
548
2838
1.4e−295










Description


gp:[GI:g3676418] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid phSK41, complete sequence.] [NT:Orf538] [LE:4531] [RE:6147]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_2359417_c2_211
3717
7489
309
102
392
2.1e−36










Description


gp:[GI:g3676422] [LN:AF051917] [AC:AF051917:L19570] [PN:putative membrane


protein] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pSK41, complete sequence.] [NT:Orf77] [LE:10692] [RE:10925]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23603382_c2_196
3718
7490
603
200
688
9.2e−68










Description


sp:[LN:YIL2_STAAU] [AC:P41370] [OR:STAPHYLOCOCCUS AUREUS] [DE:HYPOTHETICAL


PROTEIN IN ILES 3′REGION (ORF C) (FRAGMENT)] [SP:P41370] [DB:swissprot]


>pir:[LN:S40262] [AC:S40262] [PN:hypothetical protein C] [OR:Staphylococcus


aureus] [DB:pir2] >gp:[GI:g438228] [LN:SADNAMUPR] [AC:X75439]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus plasmid encoded


DNA, mup R gene.] [NT:ORF C] [SP:P41370] [LE:3621] [RE:>4013] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23651712_c2_191
3719
7491
480
159
779
2.1e−77










Description


pir:[LN:B56976] [AC:B56976] [PN:transfer protein complex TrsJ] [GN:trsJ]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310617] [LN:STATRSC]


[AC:L11998] [GN:trsJ] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:10014]


[RE:10478] [DI:direct] >gp:[GI:g3676444] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative membrane protein TraJ] [GN:traJ] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:33617] [RE:34081] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23727302_c3_215
3720
7492
1296
431
2175
2.5e−225










Description


pir:[LN:G36891] [AC:G36891] [PN:transfer complex protein TrsF] [GN:trsF]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310613] [LN:STATRSC]


[AC:L11998] [GN:trsF] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:5011] [RE:6291]


[DI:direct] >gp:[GI:g3676440] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative membrane protein TraF] [GN:traF] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:28614] [RE:29894] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_c2_201
3721
7493
234
77





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_f1_16
3722
7494
162
53





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_f1_32
3723
7495
135
44





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_f1_51
3724
7496
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_f2_70
3725
7497
174
57





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_23959802_f3_119
3726
7498
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24001537_c2_187
3727
7499
750
249
1184
2.5e−120










Description


pir:[LN:E36891] [AC:E36891] [PN:transfer complex protein TrsD] [GN:trsD]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310611] [LN:STATRSC]


[AC:L11998] [GN:trsD] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:2283] [RE:2966]


[DI:direct] >gp:[GI:g3676438] [LN:AF0519171 [AC:AF051917:L19570] [PN:TraD]


[GN:traD] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pSK41, complete sequence.] [LE:25886] [RE:26569] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24298387_c1_171
3728
7500
147
48
68
0.045










Description


sp:[LN:PSBH_CHLVU] [AC:P56323] [GN:PSBH] [OR:CHLORELLA VULGARIS]


[DE:PHOTOSYSTEM II 10 KD PHOSPHOPROTEIN] [SP:P56323] [DB:swissprot]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24393803_f1_28
3729
7501
171
56





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24415937_c2_189
3730
7502
489
162
819
1.2e−81










Description


pir:[LN:I36891] [AC:I36891] [PN:transfer complex protein TrsH] [GN:trsH]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310615] [LN:STATRSC]


[AC:L11998] [GN:trsH] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:7395] [RE:7880]


[DI:direct] >gp:[GI:g3676442] [LN:AF051917] [AC:AF051917:L19570]


[PN:lipoprotein TraH] [GN:traH] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [NT:signal


peptide recognized as a pheromone by the] [LE:30998] [RE:31483] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24664812_c1_155
3731
7503
423
140
671
5.8e−66










Description


pir:[LN:D36891] [AC:D36891] [PN:transfer complex protein TrsC] [GN:trsC]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310610] [LN:STATRSC]


[AC:L11998] [GN:trsC] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:1889] [RE:2296]


[DI:direct] >gp:[GI:g3676437] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative membrane protein TraC] [GN:traC] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:25492] [RE:25899] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24723137_f1_49
3732
7504
225
74
315
3.1e−28










Description


pir:[LN:A36891] [AC:A36891] [PN:transfer complex protein TrsN] [GN:trsN]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g3676434] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative regulator of transfer genes ArtA]


[GN:artA] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pSK41, complete sequence.] [LE:23764] [RE:23952]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_24792033_c2_192
3733
7505
138
45





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_25587777_f1_52
3734
7506
264
87
444
6.6e−42










Description


gp:[GI:g3676425] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf86] [LE:12564] [RE:12824]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_26594052_c1_150
3735
7507
336
111
567
6.1e−55










Description


gp:[GI:g3676424] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf109] [LE:12231] [RE:12560]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_26600927_c2_206
3736
7508
786
261
1347
1.4e−137










Description


gp:[GI:g3676417] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf259] [LE:3618] [RE:4397]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_29558262_c2_205
3737
7509
129
42





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_30273550_c1_162
3738
7510
432
143
671
5.8e−66










Description


pir:[LN:E56976] [AC:E56976] [PN:transfer complex protein TrsM] [GN:trsM]


[CL:single-stranded DNA-binding protein homology] [OR:Staphylococcus aureus]


[DB:pir2] >gp:[GI:g310620] [LN:STATRSC] [AC:L11998] [GN:trsM]


[OR:Staphylococcus aureus] [SR:Staphylococcus aureus (individual_isolate


pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus conjugative transfer


gene complex (trs).] [NT:putative] [LE:13127] [RE:13519] [DI:direct]


>gp:[GI:g3676447] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


single-stranded DNA binding protein] [GN:traM] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:36730] [RE:37122] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_30503392_c2_188
3739
7511
1083
360
1889
5.0e−195










Description


gp:[GI:g3676441] [LN:AF051917] [AC:AF051917:L19570] [PN:putative membrane


protein TraG] [GN:traG] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:29912]


[RE:30988] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_33786251_c3_230
3740
7512
1113
370
1926
6.0e−199










Description


sp:[LN:AACA_STAAU] [AC:P14507] [GN:AACA-APHD] [OR:STAPHYLOCOCCUS


AUREUS:ENTEROCOCCUS FAECALIS] [SR:,STREPTOCOCCUS FAECALIS]


[EC:2.3.1.—:2.7.1.—] [DE:AMINOGLYCOSIDE PHOSPHOTRANSFERASE, [APH[2′′))]


[SP:P14507] [DB:swissprot] >pir:[LN:S26353] [AC:S26353] [PN:aminoglycoside


resistance protein aacA-aphD] [OR:Staphylococcus aureus] [DB:pir2]


>pir:[LN:A26048] [AC:A26048] [PN:aminoglycoside acetyltransferase]


[OR:Enterococcus faecalis] [DB:pir2] >gp:[GI:g152948] [LN:STAAGLSRA]


[AC:M18086:M29261] [PN:aminoglycoside resistance protein] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain SK982) DNA] [DB:genpept-bct1]


[DE:S. aureus transposon 4001 aacA-aphD aminoglycoside resistance


gene, complete cds, and right and left IS256 transposase genes.] [LE:1725]


[RE:3164] [DI:direct] >gp:[GI:g153586] [LN:STRBRP] [AC:M13771]


[OR:Enterococcus faecalis] [SR:S. faecalis DNA, clone pSF815A]


[DB:genpept-bct1] [DE:Streptococcus faecalis 6′-aminoglycoside


acetyltransferasephosphotransferase (AAC(6′)-APH(2′)) bifunctional


resistance protein, complete cds.] [NT:AAC(6′)-APH(2′) bifunctional


resistance protein] [LE:304] [RE:1743] [DI:direct] >gp:[GI:g3676454]


[LN:AF051917] [AC:AF051917:L19570] [PN:bifunctional aminoglycoside modifying


enzyme] [GN:aacA-aphD] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:42505]


[RE:43944] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_33786251_f2_66
3741
7513
390
129
644
4.2e−63










Description


sp:[LN:TRA6_STAAU] [AC:P19775] [GN:TNP] [OR:STAPHYLOCOCCUS AUREUS]


[DE:TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS256 IN TRANSPOSON TN4001]


[SP:P19775] [DB:swissprot] >pir:[LN.:JS0296] [AC:JS0296] [PN:transposase]


[GN:tnp] [OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g152947]


[LN:STAAGLSRA] [AC:M18086:M29261] [PN:transposase] [OR:Staphylococcus


aureus] [SR:Staphylococcus aureus (strain SK982) DNA] [DB:genpept-bct1]


[DE:S. aureus transposon 4001 aacA-aphD aminoglycoside resistance


gene, complete cds, and right and left IS256 transposase genes.] [LE:102]


[RE:1274] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_34242300_c1_158
3742
7514
2037
678
3430
0.0










Description


pir:[LN:F36891] [AC:F36891] [PN:transfer complex protein TrsE]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310612] [LN:STATRSC]


[AC:L11998] [GN:trsE] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:2981] [RE:4999]


[DI:direct] >gp:[GI:g3676439] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative ATPase TraE] [GN:traE] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:26584] [RE:28602] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_34642562_c1_174
3743
7515
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_35397177_c2_182
3744
7516
1062
353
1760
2.3e−181










Description


gp:[GI:g3676423] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf346] [LE:11188] [RE:12228]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_35397177_c3_241
3745
7517
132
44
142
3.1e−09










Description


gp:[GI:g3676423] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf346] [LE:11188] [RE:12228]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_36048212_c3_221
3746
7518
774
257
783
7.9e−78










Description


sp:[LN:YIL1_STAAU] [AC:P41369] [OR:STAPHYLOCOCCUS AUREUS] [DE:HYPOTHETICAL


PROTEIN IN ILES 5′REGION (ORF B) (FRAGMENT)] [SP:P41369] [DB:swissprot]


>pir:[LN:S40261] [AC:S40261] [PN:hypothetical protein B] [OR:Staphylococcus


aureus] [DB:pir2] >gp:[GI:g438227] [LN:SADNAMUPR] [AC:X75439]


[OR:Staphylococcus aureus] [DB:genpept-bct1] [DE:S. aureus plasmid encoded


DNA, mup R gene.] [NT:ORF B] [SP:P41369] [LE:<1] [RE:450] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_36605260_c1_169
3747
7519
630
209
1077
5.5e−109










Description


gp:[GI:g3676413] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf204] [LE:72] [RE:686] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_3907943_f3_103
3748
7520
2010
669
3498
0.0










Description


gp:[GI:g3676420] [LN:AF051917] [AC:AF051917:L19570] [PN:oriT nickase Nes]


[GN:nes] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pSK41, complete sequence.] [LE:8115] [RE:10112]


[DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_3908407_c3_214
3749
7521
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4300002_c1_153
3750
7522
126
41





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4428802_f2_57
3751
7523
168
55





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4486075_c1_154
3752
7524
975
324
1640
1.2e−168










Description


pir:[LN:B36891] [AC:B36891] [PN:transfer complex protein TrsA] [GN:trsA]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310608] [LN:STATRSC]


[AC:L11998] [GN:trsA] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:521] [RE:1495]


[DI:direct] >gp:[GI:g3676435] [LN:AF051917] [AC:AF051917:L19570] [PN:TraA]


[GN:traA] [OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus


aureus plasmid pSK41, complete sequence.] [LE:24124] [RE:25098] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4586062_c1_176
3753
7525
141
46





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4724035_c1_170
3754
7526
1134
377
1728
5.7e−178










Description


gp:[GI:g3676414] [LN:AF051917] [AC:AF051917:L19570] [PN:unknown]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [NT:Orf423] [LE:755] [RE:2026]


[DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_4745437_c2_190
3755
7527
2118
705
3603
0.0










Description


pir:[LN:A56976] [AC:A56976] [PN:transfer complex protein TrsI] [GN:trsI]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310616] [LN:STATRSC]


[AC:L11998] [GN:trsI] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:7896] [RE:9998]


[DI:direct] >gp:[GI:g3676443] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative topoisomerase TraI] [GN:traI] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:31499] [RE:33601] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_5109675_c2_186
3756
7528
324
107
535
1.5e−51










Description


pir:[LN:C36891] [AC:C36891] [PN:transfer complex protein TrsB] [GN:trsB]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310609] [LN:STATRSC]


[AC:L11998] [GN:trsB] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:1512] [RE:1829]


[DI:direct] >gp:[GI:g3676436] [LN:AF051917] [AC:AF051917:L19570]


[PN:putative membrane protein TraB] [GN:traB] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:25115] [RE:25432] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_5314202_c3_219
3757
7529
918
305
1524
2.4e−156










Description


pir:[LN:D56976] [AC:D56976] [PN:transfer complex protein TrsL] [GN:trsL]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g310619] [LN:STATRSC]


[AC:L11998] [GN:trsL] [OR:Staphylococcus aureus] [SR:Staphylococcus aureus


(individual_isolate pG01) DNA] [DB:genpept-bct1] [DE:Staphylococcus aureus


conjugative transfer gene complex (trs).] [NT:putative] [LE:12193]


[RE:13110] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_c1_152
3758
7530
693
230
1199
6.5e−122










Description


gp:[GI:g1762100] [LN:SEU40385] [AC:U40385] [PN:transposase] [GN:tnp]


[OR:Staphylococcus epidermidis] [DB:genpept-bct1] [DE:Staphyloccous


epidermidis plasmid pSK818 insertion sequence IS257 (818B) putative


transposase gene, complete cds.] [NT:Tnp; putative transposase] [LE:57]


[RE:731] [DI:direct] >gp:[GI:g1762102] [LN:SEU40386] [AC:U40386]


[PN:transposase] [GN:tnp] [OR:Staphylococcus epidermidis] [DB:genpept-bct1]


[DE:Staphyloccous epidermidis plasmid pSK818 insertion sequence IS257 (818C)


putative transposase gene, complete cds.] [NT:Tnp; putative transposase]


[LE:57] [RE:731] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_c1_163
3759
7531
693
230
1201
4.0e−122










Description


pir:[LN:A60634] [AC:A60634:C30471:S26349] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46597] [LN:SAIS2571]


[AC:X53952] [PN:transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus plasmid pSH6 DNA for insertion sequences IS257-1 and IS256.]


[LE:188] [RE:862] [DI:direct] >gp:[GI:g3676452] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative transposase TnpE] [GN:tnpE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [LE:40946] [RE:41620] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_c1_168
3760
7532
693
230
1205
1.5e−122










Description


pir:[LN:C60634] [AC:C60634:S26351] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46600] [LN:SAIS2572]


[AC:X53951] [PN:putative transposase] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus plasmid pSH6 DNA for insertion sequences


IS257-2, IS257-3 and IS256.] [LE:1752] [RE:2426] [DI:direct]


>gp:[GI:g3676456] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


transposase TnpG] [GN:tnpG] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:45713]


[RE:46387] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_c2_197
3761
7533
660
219
1116
4.1e−113










Description


pir:[LN:A60634] [AC:A60634:C30471:S26349] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46597] [LN:SAIS2571]


[AC:X53952] [PN:transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus plasmid pSH6 DNA for insertion sequences IS257-1 and IS256.]


[LE:188] [RE:862] [DI:direct] >gp:[GI:g3676452] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative transposase TnpE] [GN:tnpE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [LE:40946] [RE:41620] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_c3_229
3762
7534
693
230
1201
4.0e−122










Description


pir:[LN:A60634] [AC:A60634:C30471:S26349] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46597] [LN:SAIS2571]


[AC:X53952] [PN:transposase] [OR:Staphylococcus aureus] [DB:genpept-bct1]


[DE:S. aureus plasmid pSH6 DNA for insertion sequences IS257-1 and IS256.]


[LE:188] [RE:862] [DI:direct] >gp:[GI:g3676452] [LN:AF051917]


[AC:AF051917:L19570] [PN:putative transposase TnpE] [GN:tnpE]


[OR:Staphylococcus aureus] [DB:genpept-bct2] [DE:Staphylococcus aureus


plasmid pSK41, complete sequence.] [LE:40946] [RE:41620] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_6929686_f3_115
3763
7535
684
227
1196
1.4e−121










Description


pir:[LN:B60634] [AC:B60634:S26350] [PN:probable transposase]


[OR:Staphylococcus aureus] [DB:pir2] >gp:[GI:g46599] [LN:SAIS2572]


[AC:X53951] [PN:putative transposase] [OR:Staphylococcus aureus]


[DB:genpept-bct1] [DE:S. aureus plasmid pSH6 DNA for insertion sequences


IS257-2, IS257-3 and IS256.] [LE:556] [RE:1221] [DI:complement]


>gp:[GI:g3676455] [LN:AF051917] [AC:AF051917:L19570] [PN:putative


transposase TnpF] [GN:tnpF] [OR:Staphylococcus aureus] [DB:genpept-bct2]


[DE:Staphylococcus aureus plasmid pSK41, complete sequence.] [LE:44517]


[RE:45182] [DI:complement]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012391_822802_c3_213
3764
7536
1011
336
1647
2.2e−169










Description


gp:[GI:g3676426] [LN:AF051917] [AC:AF051917:L19570] [PN:putative replication


initiation protein Rep] [GN:rep] [OR:Staphylococcus aureus]


[DB:genpept-bct2] [DE:Staphylococcus aureus plasmid pSK41, complete


sequence.] [LE:13205] [RE:14164] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_1442583_c1_19
3765
7537
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_1442583_c3_25
3766
7538
144
47





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_23671885_c1_18
3767
7539
159
52





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_2776391_f3_12
3768
7540
207
68





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_29323431_f3_15
3769
7541
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_30495306_f2_6
3770
7542
123
40





Description


NO-HIT





ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_34023375_c2_23
3771
7543
501
166
790
1.4e−78










Description


sp:[LN:REMA_STAAU] [AC:P13969] [GN:REPL:REP] [OR:STAPHYLOCOCCUS


AUREUS:STAPHYLOCOCCUS SIMULANS] [DE:REPLICATION AND MAINTENANCE PROTEIN


(PLASMID REPLICATION PROTEIN)] [SP:P13969] [DB:swissprot] >pir:[LN:A29827]


[AC:A29827:C46568] [PN:replication protein REP] [OR:Staphylococcus aureus]


[DB:pir2] >gp:[GI:g153064] [LN:PE5PE5A] [AC:M17990] [GN:repL] [OR:Plasmid


pE5] [SR:Plasmid pE5 DNA] [DB:genpept-bct1] [DE:Plasmid pE5 (from


Staphylococcus aureus, strain RN451) repL protein and ermC protein, complete


cds.] [LE:389] [RE:865] [DI:direct] >gp:[GI:g506624] [LN:STAPT48CG]


[AC:M19652] [OR:Plasmid pT48] [SR:Plasmid pT48 (from S. aureus strain T48)


DNA] [DB:genpept-bct1] [DE:Plasmid pT48 (from S. aureus strain T48) complete


genome.] [NT:putative. ORF B.] [LE:64] [RE:540] [DI:complement]


>gp:[GI:g2407672] [LN:AF019140] [AC:AF019140] [PN:Rep] [GN:rep]


[OR:Staphylococcus simulans] [DB:genpept-bct2] [DE:Staphylococcus simulans


erythromycin resistance plasmid pPV142 rRNAN-6-methyltransferase (ermM) and


replication protein (rep) genes, complete cds.] [NT:plasmid replication


protein] [LE:1699] [RE:2175] [DI:direct] >gp:[GI:g1791222] [LN:SCU82607]


[AC:U82607] [PN:plasmid replication protein] [OR:Staphylococcus chromogenes]


[DB:genpept-bct2] [DE:Staphylococcus chromogenes plasmid pPV141 erythromycin


resistance plasmid, rRNA N-6-methyltransferase (ermM) and plasmid


replication protein genes, complete cds.] [LE:1583] [RE:2059] [DI:direct]
















ORF Name
NT ID
AA ID
NT LN
AA LN
Score
P-Value





AI7503012392_4304683_c2_21
3772
7544
771
256
1270
2.0e−129










Description


sp:[LN:ERM4_STAAU] [AC:P13978] [GN:ERMC] [OR:STAPHYLOCOCCUS AUREUS]


[EC:2.1.1.48] [DE:RESISTANCE PROTEIN)] [SP:P13978] [DB:swissprot]


>pir:[LN:B46568] [AC:B46568] [PN:ermC protein] [CL:rRNA


(adenine-N6-)-methyltransferase] [OR:Staphylococcus aureus] [DB:pir2]


>gp:[GI:g455358] [LN:STAPT48CG] [AC:M19652] [PN:23S RNA methylase] [GN:ermC]


[OR:Plasmid pT48] [SR:Plasmid pT48 (from S. aureus strain T48) DNA]


[DB:genpept-bct1] [DE:Plasmid pT48 (from S. aureus strain T48) complete


genome.] [LE:988] [RE:1722] [DI:complement]

## Claims

1. An isolated nucleic acid comprising a nucleotide sequence encoding an S. epidermidis polypeptide of SEQ ID NO:5607.

2. A recombinant expression vector comprising the nucleic acid of claim 1 operably linked to a transcription regulatory element.

3. A cell comprising a recombinant expression vector of claim 2.

4. A method for producing an S. epidermidis polypeptide comprising culturing a cell of claim 3 under conditions that permit expression of the polypeptide.

5. An isolated nucleic acid comprising a nucleotide sequence of SEQ ID NO:1835, or its complement, wherein said nucleic acid encodes an S. epidermidis polypeptide or a fragment of at least twenty amino acid residues.

6. A recombinant expression vector comprising the nucleic acid of claim 5 operably linked to a transcription regulatory element.

7. A cell comprising a recombinant expression vector of claim 6.

8. A method for producing an S. epidermidis polypeptide comprising culturing a cell of claim 7 under conditions that permit expression of the polypeptide.

9. A probe comprising a nucleotide sequence consisting of at least forty contiguous nucleotides of a nucleotide sequence of SEQ ID NO:1835 or its complement.