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                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS MECDPv1.0





- Main page
- Cattle reference (v2.9)
- Cattle extended (v1.0)
- Sheep reference (v2.4)
- Sheep extended (v1.0)
- Sheep international (v75)
- Sheep Tissues Bank (v30)
- Species Mapped to Cattle
- Species Mapped to Sheep
- Cell Lines

ARS1.2 MECDPV1.0 .bam by breedheadline bar 1 - MECDPv1.0
               2 - ARS1.2 MECDPV1.0 .bam by breed  **14x WGS of MECDPv1.0** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Breed
USMARC animal ID
Public links
Estimateda mapped read coverage
GB  >Q20bAngus
19879801
URL
17.1
51.4Angus
19939802
URL
13.9
41.7Angus
19999821
URL
14.5
43.4Angus
19999822
URL
14.9
44.8Angus
19999823
URL
15.4
46.3Angus
19999825
URL
14.9
44.6Angus, 6 genomes URLAnkole-Watusi
19360202
URL
13.9
41.7Ankole-Watusi
19360205
URL
16.5
49.5Ankole-Watusi
19360214
URL
18.2
54.5Ankole-Watusi
19360220
URL
14.2
42.7Ankole-Watusi
19360223
URL
16.1
48.3Ankole-Watusi
19360226
URL
17.3
51.8Ankole-Watusi
19360229
URL
16.4
49.2Ankole-Watusi
19360235
URL
15.3
45.9Ankole-Watusi
19360238
URL
19.7
59.2Ankole-Watusi
19360241
URL
36.7
110.1Ankole-Watusi, 10 genomes URLAyrshire
19360805
URL
13.8
41.3Ayrshire
19360822
URL
13.7
41.1Ayrshire
19360860
URL
16.4
49.2Ayrshire
19360866
URL
13.4
40.3Ayrshire, 4 genomes URLBeefalo
NAGP5851
URL
35.3
106.0Beefalo
NAGP5854
URL
37.8
113.1Beefalo
NAGP5861
URL
32.2
69.7Beefalo
NAGP5887
URL
42.7
128.0Beefalo
NAGP5895
URL
40.5
121.5Beefalo
NAGP5872
URL
30.0
90.0Beefalo
NAGP5874
URL
34.5
103.5Beefalo, 7 genomes URLBeefmaster
19999925
URL
26.3
78.8Beefmaster
19999926
URL
14.2
42.6Beefmaster
19999927
URL
36.5
109.4Beefmaster
19999928
URL
17.9
53.7Beefmaster
19999929
URL
14.9
44.8Beefmaster, 5 genomes URLBelgian Blue
19360119
URL
14.5
43.5Belgian Blue
19360120
URL
23.5
70.5Belgian Blue
19360125
URL
13.6
41.0Belgian Blue
19360127
URL
16.1
48.4Belgian Blue, 4 genomes URLBlonde d'Aquitaine
19360602
URL
19.1
57.2Blonde d'Aquitaine
19360608
URL
18.1
54.2Blonde d'Aquitaine
19360611
URL
17.1
51.3Blonde d'Aquitaine
19360614
URL
19.5
58.4Blonde d'Aquitaine, 4 genomes URLBrahman
19919842
URL
26.6
79.7Brahman
19999811
URL
26.5
79.4Brahman
19999812
URL
13.5
40.6Brahman
19999813
URL
17.1
51.2Brahman
19999819
URL
16.4
49.2Brahman, 5 genomes URLBrahmousin
19361305
URL
14.3
42.8Brahmousin
19361314
URL
14.6
43.9Brahmousin
19361346
URL
13.9
41.6Brahmousin
19361361
URL
14.5
43.6Brahmousin, 4 genomes URLBrangus
19999909
URL
16.1
48.4Brangus
19999910
URL
16.0
48.1Brangus
19999911
URL
28.3
84.9Brangus
19999912
URL
14.3
42.9Brangus
19999913
URL
14.2
42.7Brangus, 5 genomes URLBraunvieh
19220065
URL
14.4
43.2Braunvieh
19220072
URL
14.7
44.1Braunvieh
19220079
URL
15.3
46.0Braunvieh
19220086
URL
14.3
42.8Braunvieh, 4 genomes URLBrown Swiss
19220321
URL
16.6
49.9Brown Swiss
19220324
URL
13.6
40.9Brown Swiss
19220378
URL
15.4
46.1Brown Swiss
19220381
URL
22.0
65.9Brown Swiss, 4 genomes URLCharolais
19939808
URL
13.4
40.2Charolais
19969825
URL
13.6
40.8Charolais
19989916
URL
16.6
49.9Charolais
19989919
URL
22.8
68.3Charolais
19999851
URL
13.6
40.8Charolais
19999852
URL
15.9
47.6Charolais, 6 genomes URLChianina
19999914
URL
13.4
40.2Chianina
19999918
URL
13.5
40.4Chianina
19999923
URL
14.5
43.5Chianina
19999924
URL
17.8
53.4Chianina, 4 genomes URLCorriente
19202900
URL
15.4
46.1Corriente
19202901
URL
13.7
41.1Corriente
19202902
URL
17.5
52.4Corriente
19202903
URL
14.2
42.7Corriente, 4 genomesURLDevon
19201901
URL
25.9
77.8Devon
19201906
URL
10.2
30.5Devon
19201910
URL
16.3
49.0Devon
19201921
URL
24.2
72.6Devon, 4 genomesURLDexter
19201932
URL
13.7
41.2Dexter
19201937
URL
16.7
50.1Dexter
19201941
URL
14.1
42.3Dexter
19201953
URL
17.5
52.6Dexter, 4 genomesURLGelbvieh
19929826
URL
16.9
50.8Gelbvieh
19989876
URL
14.2
42.5Gelbvieh
19999863
URL
26.0
78.1Gelbvieh
19999864
URL
13.7
41.2Gelbvieh
19999865
URL
16.9
50.7Gelbvieh
19999866
URL
13.8
41.5Gelbvieh, 6 genomesURLGuernsey
19361402
URL
14.8
44.3Guernsey
19361408
URL
13.4
40.2Guernsey
19361422
URL
22.4
67.1Guernsey
19361434
URL
15.8
47.5Guernsey, 4 genomesURLHereford
19969811
URL
15.8
47.5Hereford
19969812
URL
19.4
58.2Hereford
19989837
URL
19.4
58.1Hereford
19999828
URL
13.7
41.2Hereford
19999829
URL
14.7
44.0Hereford
20049808
URL
13.8
41.3Hereford, 6 genomesURLHighland
19361102
URL
13.8
41.5Highland
19361105
URL
14.1
42.4Highland
19361126
URL
15.2
45.6Highland
19361131
URL
14.7
44.2Highland, 4 genomesURLHolstein
19999883
URL
13.5
40.4Holstein
19999884
URL
16.7
50.2Holstein
19999886
URL
14.2
42.5Holstein
19999887
URL
13.6
40.8Holstein, 4 genomesURLIndu Brazil
19361502
URL
15.9
47.8Indu Brazil
19361508
URL
20.6
61.7Indu Brazil
19361528
URL
15.4
46.3Indu Brazil
19361549
URL
13.9
41.7Indu Brazil, 4 genomesURLJersey
34824843
URL
17.2
51.7Jersey
34824853
URL
18.3
54.8Jersey
40159734
URL
16.4
49.3Jersey
42507541
URL
15.5
46.5Jersey, 4 genomesURLLimousin
19989863
URL
14.5
43.4Limousin
19999833
URL
16.0
48.2Limousin
19999834
URL
14.4
43.2Limousin
19999835
URL
15.6
46.8Limousin
19999837
URL
15.2
45.7Limousin
19999838
URL
14.1
42.4Limousin, 6 genomesURLMaine-Anjou
19999900
URL
13.9
41.8Maine-Anjou
19999901
URL
15.2
45.6Maine-Anjou
19999902
URL
13.4
40.3Maine-Anjou
19999903
URL
13.6
40.7Maine-Anjou
19999904
URL
14.1
42.4Maine-Anjou, 5 genomesURLMarchigiana
19360404
URL
15.3
45.9Marchigiana
19360406
URL
21.8
65.3Marchigiana
19360409
URL
15.6
46.9Marchigiana
19360410
URL
20.5
61.6Marchigiana, 4 genomesURLMiniature Hereford
19231337
URL
16.7
50.1Miniature Hereford
19231340
URL
17.2
51.7Miniature Hereford
19231343
URL
13.7
41.1Miniature Hereford, 3 genomesURLMiniature Zebu
19361202
URL
30.3
90.8Miniature Zebu
19361205
URL
18.1
54.2Miniature Zebu
19361208
URL
16.5
49.5Miniature Zebu
19361211
URL
21.6
64.8Miniature Zebu, 4 genomesURLMontbeliarde
19360902
URL
12.0
40.1Montbeliarde
19360905
URL
15.6
46.7Montbeliarde
19360908
URL
16.9
50.8Montbeliarde
19360910
URL
15.2
45.6Montbeliarde, 4 genomesURLMurray Grey
19204503
URL
13.4
40.1Murray Grey
19204506
URLMurray Grey
19204509
URLMurray Grey
19204535
URLMurray Grey, 4 genomesURLNelore
19350205
URL
22.7
68.0Nelore
19350207
URL
16.6
49.7Nelore
19350210
URL
16.8
50.3Nelore
19350213
URL
18.3
54.8Nelore, 4 genomesURLPiedmontese
19310107
URL
17.8
53.3Piedmontese
19310122
URL
14.9
44.8Piedmontese
19310137
URL
14.7
44.2Piedmontese
19310142
URL
24.3
73.0Piedmontese
19310147
URL
15.8
47.5Piedmontese
19859862
URL
17.1
51.2Piedmontese
19869834
URL
15.4
46.1Piedmontese
19869835
URL
19.6
58.7Piedmontese
LVC Rachael 25X
URL
39.7
119.1Piedmontese I, 9 genomesURLPiedmontese
NAPA01
URL
15.4
46.3Piedmontese
NAPA02
URL
17.5
52.6Piedmontese
NAPA03
URL
14.6
43.9Piedmontese
NAPA04
URL
16.9
50.7Piedmontese
NAPA05
URL
14.1
42.4Piedmontese
NAPA06
URL
13.4
40.3Piedmontese
NAPA07
URL
13.8
41.5Piedmontese
NAPA09
URL
14.8
44.5Piedmontese
TBS08Y Lexie
URL
57.2
171.6Piedmontese II, 9genomesURLPiedmontese
NAPA10
URL
16.2
48.7Piedmontese
NAPA11
URL
15.8
47.4Piedmontese
NAPA12
URL
18.5
55.4Piedmontese
NAPA13
URL
13.4
40.3Piedmontese
NAPA14
URL
13.9
41.6Piedmontese
NAPA15
URL
13.4
40.3Piedmontese
NAPA16
URL
14.1
42.4Piedmontese
NAPA17
URL
18.4
55.1Piedmontese
NAPA18
URL
19.0
57.1Piedmontese III, 9 genomes URLPiedmontese
NAPA19
URL
21.0
63.0Piedmontese
NAPA20
URL
25.6
76.9Piedmontese
NAPA21
URL
22.0
66.1Piedmontese
NAPA22
URL
14.3
42.8Piedmontese
NAPA23
URL
15.6
46.7Piedmontese
NAPA24
URL
13.3
40.0Piedmontese IV, 6 genomes URLPinzgauer
19360702
URL
14.4
43.1Pinzgauer
19360705
URL
14.5
43.6Pinzgauer
19360708
URL
14.8
44.4Pinzgauer
19360714
URL
15.6
46.8Pinzgauer, 4 genomesURLRed Angus
19979802
URL
13.4
40.3Red Angus
19999855
URL
13.8
41.5Red Angus
19999856
URL
14.0
41.9Red Angus
19999857
URL
20.4
61.2Red Angus
19999859
URL
13.5
40.5Red Angus
19999860
URL
13.6
40.9Red Angus, 6 genomesURLRed Poll
19214224
URL
18.9
56.7Red Poll
19214226
URL
14.8
44.4Red Poll
19214229
URL
15.2
45.6Red Poll
19214232
URL
14.1
42.3Red Poll, 4 genomesURLRomagnola
19361002
URL
13.9
41.7Romagnola
19361014
URL
14.7
44.1Romagnola
19361037
URL
14.4
43.2Romagnola
19361040
URL
15.5
43.5Romagnola, 4 genomesURLSalers
19999874
URL
13.9
41.8Salers
19999875
URL
13.9
41.7Salers
19999876
URL
13.9
41.8Salers
19999880
URL
16.5
49.6Salers
19999882
URL
14.4
43.1Salers, 5 genomesURLSanta Gertrudis
19999905
URL
27.5
82.5Santa Gertrudis
19999906
URL
14.2
42.7Santa Gertrudis
19999907
URL
14.6
43.7Santa Gertrudis
19999908
URL
14.9
44.7Santa Gertrudis, 4 genomesURLSenepol
19360003
URL
14.3
43.0Senepol
19360006
URL
14.8
44.3Senepol
19360009
URL
15.1
45.3Senepol
19360018
URL
14.7
44.1Senepol, 4 genomesURLShorthorn
19999891
URL
14.1
42.2Shorthorn
19999892
URL
13.7
41.0Shorthorn
19999893
URL
13.6
40.9Shorthorn
19999894
URL
13.7
41.2Shorthorn
19999895
URL
15.1
45.2Shorthorn, 5 genomesURLSimmental
19929810
URL
22.1
66.4Simmental
19999842
URL
16.0
48.1Simmental
19999843
URL
17.0
51.1Simmental
19999846
URL
18.1
54.3Simmental
19999847
URL
16.5
49.5Simmental
19999848
URL
13.4
40.2Simmental, 6 genomesURLTarentaise
19293032
URL
13.6
40.9Tarentaise
19293033
URL
15.9
47.7Tarentaise
19293034
URL
16.0
48.1Tarentaise
19293035
URL
14.6
43.8Tarentaise, 4 genomesURLTexas Longhorn
19999870
URL
14.3
42.8Texas Longhorn
19999871
URL
13.8
41.4Texas Longhorn
19999872
URL
13.5
40.6Texas Longhorn
19999873
URL
13.8
41.4Texas Longhorn, 4 genomesURLTexas Longhorn, CTLR
19330108
URL
26.7
80.3Texas Longhorn, CTLR
19330113
URL
19.7
59.2Texas Longhorn, CTLR
19330116
URL
22.7
68.1Texas Longhorn, CTLR
19330119
URL
13.3
40.0Texas Longhorn, CTLR, 4 genomesURLTuli
19360501
URL
13.5
40.6Tuli
19360504
URL
15.9
47.7Tuli
19360506
URL
14.5
43.5Tuli
19360509
URL
13.5
40.4Tuli
19360512
URL
18.2
54.5Tuli
19360514
URL
14.7
44.1Tuli
19360517
URL
13.5
40.4Tuli
19360522
URL
14.5
43.4Tuli
19360525
URL
14.5
43.4Tuli
19360526
URL
15.9
47.7Tuli, 10 genomesURLWagyu
19201661
URL
14.0
41.9Wagyu
19201692
URL
18.1
54.4Wagyu
19201703
URL
16.3
48.4Wagyu
19201777
URL
15.0
44.9Wagyu, 4 genomesURLTotalAverageaCitation:  Heaton MP, Smith TPL, Carnahan JK, Basnayake V, Qiu J, Simpson B, Kalbfleisch TS. Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with high-altitude pulmonary hypertension. F1000Research 2016, 5:2003.doi: 10.12688/f1000research.9254.1bTotal gigabases of genomic sequence with a quality score greater than or equal to 20.  Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. << Previous

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