U.S. flagAn official website of the United States government
                    Here's how you know **Official websites use .gov**
                            
                            A **.gov** website belongs to an official government organization in the United States.
 **Secure .gov websites use HTTPS**
                            
                            A **lock** (                            
                              A locked padlock                                                      
                            
                            ) or **https://** means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.


Menu Agricultural Research Service
						
                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
 close



    Research

                    Research Projects
                                    Publications
                                    Collaborations
                                    News
                People

                    Staff Listing
                                    Careers


        


                    WGS
                        WGS main page
                                    Cattle reference (v2.9)
                                    Cattle extended (v1.0)
                                    Sheep reference (v2.4)
                                    Sheep extended (v1.0)
                                    Sheep ISGC75
                                    Species mapped to cattle
                                    Species mapped to sheep
                                    Cell lines
                    USMARC Research Units
                        Animal Health Genomics
                                    Genetics and Animal Breeding
                                    Livestock Bio-systems
                                    Meat Safety & Quality
                                    Nutrition, Growth and PhysiologySearch small
                    Search
            
            ARS Home
                                About ARS
                                Contact Us




ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS Species mapped to cattle







Buffalo, Capeheadline bar 1 - Species mapped to cattle
               2 - Banteng
                  3 - Bison
                  4 - Bongo
                  5 - Buffalo, Cape
                  6 - Buffalo, water
                  7 - Bushbuck
                  8 - Caribou
                  9 - Eland
                  10 - Gaur
                  11 - Gemsbok
                  12 - Moose
                  13 - Muskox
                  14 - Nilgai
                  15 - Pronghorn
                  16 - Sheep, bighorn
                  17 - Sheep, domestic
                  18 - Wildebeest
                  19 - Yak
                  20 - Temp   **10-20x WGS of Cape buffalo (*Syncerus caffer*)** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Species/breeda
Animal ID
Public links
Estimatedmapped read coverage
GB>Q20bCape buffalo
200778001
URL
14x
41.5Cape buffalo
200778002
URL
14x
43.1Cape buffalo
200778003*
URL
14x
41.7Cape buffalo
201178007
URL
14x
41.6Cape buffalo
201178008
URL
18x
52.6Cape buffalo
200778004
URL
14x
43.5Cape buffalo
200778005*
URL
16x
48.7Cape buffalo, 7 genomes URLTotalAverageaCitation:doi:bTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.*Note: these data sets appear to be from the same animal. << Previous

                        1
                        2
                        3
                        4
                        [5]
                        6
                        7
                        8
                        9
                        10
                        11
                        12
                        13
                        14
                        15
                        16
                        17
                        18
                        19
                        20

                     Next >>


Return to top


Connect with ARS Sign up


ARS Home
                            USDA.gov
                            Plain Writing
                            Policies & Links
                            Civil Rights Statements
                            FOIA
                            Accessibility Statement
                            Privacy Policy
                            Non-Discrimination Statement
                            Quality of Information
                            USA.gov
                            WhiteHouse.gov