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                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS





- Main page
- Cattle reference (v2.9)
- Cattle extended (v1.0)
- Sheep reference (v2.4)
- Sheep extended (v1.0)
- Sheep international (v75)
- Sheep Tissues Bank (v30)
- Species Mapped to Cattle
- Species Mapped to Sheep
- Cell Lines

ISGC75headline bar **10x WGS of ISGC75 by mixed groups** **To view DNA sequence data for an animal or a mixed group:** Download and install a desktop version ofIGV
Load the Oarv3.1 genome from IGV's server "Sheep (Ovis Aries v3.1)"
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download  Breed group
Animal ID
Region of Prominance
Public linksISGC75_Group1_8tracks URLAfshari
AFS32
NW Iran
URLAfshari
AFS33
NW Iran
URLAfrican White Dorper
AW454
South Africa
URLAfrican White Dorper
AWD1
South Africa
URLAfrican White Dorper
AWD3
South Africa
URLAwassi, Turkish
AWT1
Turkey
URLAwassi, Turkish
AWT2
Turkey
URLBrazilian Creole
BCS1
Brazil
URLISGC75_Group2_8tracks URLBrazilian Creole
BCS3
Brazil
URLBangladeshi
BGE2
Bangladesh
URLBangladeshi
BGE4
Bangladesh
URLMorada Nova
BMN3
Brazil
URLMorada Nova
BMN4
Brazil
URLSanta Inês
BSI3
Brazil
URLSanta Inês
BSI4
Brazil
URLCastellana
CAS1
Spain
URLISGC75_Group3_8tracksURLCastellana
CAS3
Spain
URLCine Capari
CC50
Turkey
URLChangthangi
CHA02
Jammu and Kashmir
URLChangthangi
CHA05
Jammu and Kashmir
URLChurra
CHU1
Spain
URLChurra
CHU2
Spain
URLCheviot
CHVA1
England-Scotland
URLCheviot
CHVC1
England-Scotland
URLISGC75_Group4_8tracksURLWelsh Mountain, Dolgellau
DWM1
Wales
URLEthiopian Menz
EMZ1
Ethiopia
URLFinnsheep
FIN1
Finland
URLFinnsheep
FIN4
Finland
URLGarole, Banglegdeshi
GAR14
Bangledesh
URLGarole, Indian
GAR4
India
URLGulf Coast native
GCN4
USA Gulf Coast
URLGulf Coast native
GCN5
USA Gulf Coast
URLISGC75_Group5_8tracksURLGarut
GUR4
Indonesia
URLGarut
GUR5
Indonesia
URLKarya
KR4
Turkey
URLKarakas
KRS3
Turkey
URLKarakas
KRS5
Turkey
URLLacaune, Meat
LAC1
France
URLLacaune, Milk
LAC84
France
URLMerino
MER454
Spain
URLISGC75_Group6_8tracksURLMerino
MERA1
Spain
URLMerino
MERC1
Spain
URLNorduz
NDZ1
Turkey
URLNorduz
NDZ4
Turkey
URLAfrikaner, Namaqua
NQA11
South Africa
URLOvis canadensis
OCAN1
Canada-USA
URLOvis canadensis
OCAN2
Canada-USA
URLOvis canadensis
OCAN3
Canada-USA
URLISGC75_Group7_9tracksURLOvis dalli
ODAL1
Canada-USA
URLOvis dalli
ODAL2
Canada-USA
URLOjalada
OJA4
Spain
URLOjalada
OJA5
Spain
URLDorset, Poll
PD454
USA
URLAfrikaner, Ronderib
RDA2
South Africa
URLAfrikaner, Ronderib
RDA4
South Africa
URLRomney
ROM454
England
URLSalz
SALA1
Spain
URLISGC75_Group8_9tracksURLSalz
SALA2
Spain
URLSalz
SALC1
Spain
URLScottish Blackface
SBF454
United Kingdom
URLSakiz
SKZ1
Turkey
URLSakiz
SKZ4
Turkey
URLSwiss Mirror
SMS2
Switzerland
URLSumatra
SUM2
Sumatra
URLSumatra
SUM7
Sumatra
URLSwiss White Alpine
SWAA27
Switzerland
URLISGC75_Group9_9tracksURLSwiss White Alpine
SWAA29
Switzerland
URLSwiss White Alpine
SWAN3
Switzerland
URLSwiss White Alpine
SWAN4
Switzerland
URLTexel
TEX454
Netherlands
URLWelsh Mountain, Tregaron
TWM1
Wales
URLValais Blacknose
VBS2
Switzerland
URLWelsh Hardy Speckled Face
WHSF1
Wales
URLTibetan, Northern
ZB08
Tibet
URLTibetan, Eastern
ZD11
Tibet
URL A description of this ISGC panel from **Heaton  et al. (2014) SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep. PLoS ONE 9(4): e94851:** "The ISGC had selected 75 animals for WGS to extend its investigation of genetic diversity and selection in the world’s sheep breeds [10]. The majority of animals (61%) were drawn from the previous study [10] to capture the diversity present across *Ovis aries*. Additional animals were recruited that either had previously been used in the construction of genomic resources for the sheep genome [26], carried disease genes, or were wild sheep sampled from the Bighorn (*Ovis Canadensis*) and Thinhorn (*Ovis dalli*) populations of North America. Each genome was sequenced to a depth of approximately 10-fold mapped read coverage with Illumina GAII (unpublished). Prepublication access to the .bam files was provided under the Toronto guidelines for data users [27]. In total, 70 domestic sheep from 43 breed groups were used to derive genotypes for the candidate SNPs and their nearby genomic regions. These data were combined with Sanger sequence data from a U.S. panel of 96 sheep (described below) to comprise a data set from 166 sheep totaling 54 breed groups."


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