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Dr. McCarty's Presentations
- Cotton Improvement 1948-2018
- Cotton Genetics Award 1961-2018
- Cotton Diversity

**Education******

B.S.; Agronomy; 1968; Mississippi State University

M.S.; Agronomy; 1971; Mississippi State University

Ph.D.; Agronomy; 1974; Mississippi State University; Research Emphasis: Agronomy, plant breeding, & entomology

**Biography & Research Interests**

Dr. McCarty’s research area is Agronomy/Breeding with emphasis in expanding cotton’s genetic diversity, conversion of photoperiodic primitive races of cotton to day-neutrality, germplasm enhancement for improved fiber quality, and breeding for root-knot and reniform nematode resistance. During his research career he has had enough success to remain motivated and enough failure to remain well grounded.

**Outside Interests**

Dr. McCarty’s other interest include visiting the family farm, enjoying the wonders of nature, family history, photography, and traveling. ****

**Projects**

- Projects Enhancing Agronomic Traits, Fiber Quality, and Resistance to Environmental Stress, Nematodes, and Fungal Diseases in CottonIn-House Appropriated (D) Accession Number:444591
**News**

- ARS News Articles USDA Researchers Develop Naturally Fire-Resistant Cotton LinesUSDA's Agricultural Research Service Honors Scientists of the Year
**Publications**

- Publications - (Clicking on the reprint icon  will take you to the publication reprint.)  
- Multi-Omics Analysis of Pigmentation Related to Proanthocyanidin Biosynthesis in Brown Cotton (Gossypium hirsutum L.)  -(Peer Reviewed Journal)   Hinchliffe, D.J., Naoumkina, M., Thyssen, G.N., Nam, S., Chang, S., Mccarty, J.C., Jenkins, J.N. 2024. Multi-Omics Analysis of Pigmentation Related to Proanthocyanidin Biosynthesis in Brown Cotton (Gossypium hirsutum L.). Frontiers in Plant Science. 15: 1372232. https://doi.org/10.3389/fpls.2024.1372232.   
- Breeding of high seed oil oleate levels into Upland cotton from wild Gossypium barbadense L. germplasm.  -(Peer Reviewed Journal)   Dowd, M.K., Shockey, J., Mccarty Jr, J.C., Jenkins, J.N. 2023. Breeding of high seed oil oleate levels into Upland cotton from wild Gossypium barbadense L. germplasm. Crop Science. 63(6):3393-3401. https://doi.org/10.1002/csc2.21119.   
- Interrelationships between cotton fiber quality traits and fluid handling and moisture management properties of nonwoven textiles  -(Peer Reviewed Journal)   Hron, R.J., Hinchliffe, D.J., Thyssen, G.N., Condon, B.D., Zeng, L., Santiago Cintron, M., Jenkins, J.N., Mccarty Jr, J.C., Sui, R. 2023. Interrelationships between cotton fiber quality traits and fluid handling and moisture management properties of nonwoven textiles. Textile Research Journal. https://doi.org/10.1177/00405175221132011.   
- Interrelationships between cotton fiber quality traits and tensile properties of hydroentangled nonwoven fabrics  -(Peer Reviewed Journal)   Hinchliffe, D.J., Thyssen, G.N., Condon, B.D., Zeng, L., Hron, R.J., Madison, C.A., Jenkins, J.N., Mccarty Jr, J.C., Delhom, C.D., Sui, R. 2023. Interrelationships between cotton fiber quality traits and tensile properties of hydroentangled nonwoven fabrics. Journal of Industrial Textiles. https://doi.org/10.1177/15280837231171312.   
- Evaluation of reniform nematode resistant commercially available cotton cultivars compared with USDA developed cotton breeding lines -(Proceedings)   Conner, A., Allen, T.W., Jimenez Madrid, A.M., Tripathi, S., Tadlock, N., Wilkerson, T., Stetina, S.R., Chastain, D.R., McCarty Jr, J.C. 2023. Evaluation of reniform nematode resistant commercially available cotton cultivars compared with USDA developed cotton breeding lines. National Cotton Council Beltwide Cotton Conference. 1:325-327.   
- Chromosome substitution lines with improved essential mineral nutrients and fiber quality traits in Upland cotton  -(Peer Reviewed Journal)   Saha, S., Tewolde, H., Jenkins, J.N., Mccarty Jr, J.C., Stelly, D.M. 2023. Chromosome substitution lines with improved essential mineral nutrients and fiber quality traits in Upland cotton. Genetic Resources and Crop Evolution. https://doi.org/10.1007/s10722-023-01628-2.   
- Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population  -(Peer Reviewed Journal)   Thyssen, G.N., Condon, B.D., Hinchliffe, D.J., Zeng, L., Naoumkina, M., Jenkins, J.N., Mccarty,J.C., Sui, R., Madison, C., Li, P., Fang, D.D. Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population. PLOS ONE. 18:e0278696.2023. https://doi.org/10.1371/journal.pone.0278696.   
- Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population  -(Peer Reviewed Journal)   Fang, D.D., Thyssen, G.N., Wang, M.C., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2022. Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population. Molecular Genetics and Genomics. 298:143-152. https://doi.org/10.1007/s00438-022-01974-3.   
- Virulence of two isolates of Meloidogyne enterolobii (guava root-knot nematode) from North Carolina on cotton lines resistant to southern root-knot nematode (M. incognita) and reniform nematode (Rotylenchulus reniformis)  -(Peer Reviewed Journal)   Gaudin, A.G., Wubben, M., Mccarty Jr, J.C., Jenkins, J.N. 2023. Virulence of two isolates of Meloidogyne enterolobii (guava root-knot nematode) from North Carolina on cotton lines resistant to southern root-knot nematode (M. incognita) and reniform nematode (Rotylenchulus reniformis). Journal of Nematology. 55:0021. https://doi.org/10.2478/jofnem-2023-0021.   
- A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance  -(Peer Reviewed Journal)   Zhu, Y., Thyssen, G.N., Abdelraheem, A., Teng, Z., Fang, D.D., Jenkins, J.N., Mccarty Jr, J.C., Wedegaertner, T., Hake, K., Zhang, J. 2022. A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance. Theoretical and Applied Genetics. 135:2297-2312. https://doi.org/10.1007/s00122-022-04113-z.   
- Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton  -(Peer Reviewed Journal)   Wang, M., Qi, Z., Thyssen, G.N., Naoumkina, M.A., Jenkins, J.N., McCarty, J.C., Xiao, Y., Li, J., Zhang, X., Fang, D.D. 2022. Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton. Communications Biology. 5:60. https://doi.org/10.1038/s42003-022-03022-7.   
- Registration of seven recombinant inbred lines of Upland Cotton with improved fiber length or strength  -(Peer Reviewed Journal)   Jenkins, J.N., Mccarty Jr, J.C., Hayes, R.W., Wubben, M., Fang, D.D., Thyssen, G.N., Zeng, L., Campbell, B.T., Jones, D.C. 2021. Registration of seven recombinant inbred lines of Upland cotton with improved fiber length or strength. Journal of Plant Registrations. 16:94-99. https://doi.org/10.1002/plr2.20193.   
- Effects of interspecific chromosome substitution in upland cotton on cottonseed macronutrients  -(Peer Reviewed Journal)   Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2021. Effects of interspecific chromosome substitution in upland cotton on cottonseed macronutrients. Plants. 10(6):1-13. https://doi.org/10.3390/plants10061158.   
- History of USDA-ARS Cotton Host Resistance and Breeding Research at Mississippi State, MS -(Peer Reviewed Journal)   Mccarty Jr, J.C., Jenkins, J.N., Saha, S., Wubben, M. 2021. History of USDA-ARS Cotton Host Resistance and Breeding Research at Mississippi State, MS. Journal of Cotton Science. 25:101-157. https://www.cotton.org/journal/2021-25/2/.   
- Effect of chromosome substitution from alien tetraploid cotton species in Upland cotton on (+) and (-) gossypol enantiomer levels in cottonseed -(Peer Reviewed Journal)   Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2021. Effect of chromosome substitution from alien tetraploid cotton species in Upland cotton on (+) and (-) gossypol enantiomer levels in cottonseed. Journal of Cotton Science. 25:7-20.   
- GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents  -(Peer Reviewed Journal)   Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Wedegaertner, T., Zhang, J. 2020. GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents. Molecular Genetics and Genomics. 296(1):119-129. https://doi.org/10.1007/s00438-020-01733-2.   
- GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents -(Peer Reviewed Journal)     
- Effects of interspecific chromosome substitution in upland cotton on cottonseed micronutrients  -(Peer Reviewed Journal)   Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2020. Effects of interspecific chromosome substitution in upland cotton on cottonseed micronutrients. Plants. 9(9):1-17. https://doi.org/10.3390/plants9091081.   
- Assessing genetic variation for Fusarium wilt race 4 resistance in tetraploid cotton by screening over three thousand germplasm lines under greenhouse or controlled conditions  -(Peer Reviewed Journal)   Zhang, J., Abdelraheem, A., Zhu, Y., Wheeler, T.A., Dever, J., Frelichowski, J.E., Love, J., Ulloa, M., Jenkins, J.N., McCarty Jr, J.C., Nichols, R., Wedegaertner, T. 2020. Assessing genetic variation for Fusarium wilt race 4 resistance in tetraploid cotton by screening over three thousand germplasm lines under greenhouse or controlled conditions. Euphytica. 216:108. https://doi.org/10.1007/s10681-020-02646-2.   
- Effect of chromosome substitution from Gossypium barbadense L,G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonsend protein and oil content  -(Peer Reviewed Journal)   Saha, S., Bellaloui, N., Jenkins, J.N., Mccarty Jr, J.C., Stelly, D.M. 2020. Effect of chromosome substitution from Gossypium barbadense L,G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonsend protein and oil content. Euphytica. 216:118. https://doi.org/10.1007/s10681-020-02644-4.   
- Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population  -(Peer Reviewed Journal)   Kim, H.J., Delhom, C.D., Fang, D.D., Zeng, L., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2020. Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population. Crop Science. 60(5):2266–2279. https://doi.org/10.1002/csc2.20197.   
- Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles  -(Peer Reviewed Journal)   He, Z., Zhang, H., Fang, D.D., Zeng, L., Jenkins, J.N., McCarty, J.C. 2020. Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles. Agronomy Journal. 112:3963-3974. https://doi.org/10.1002/agj2.20264.   
- Differential effects of cotton root-knot nematode resistance QTL on RKN development and fecundity  -(Peer Reviewed Journal)   Wubben, M., Gaudin, A.G., Mccarty Jr, J.C., Jenkins, J.N. 2020. Differential effects of cotton root-knot nematode resistance QTL on RKN development and fecundity. Phytopathology. 110:927-932. https://doi.org/10.1094/PHYTO-09-19-0370-R.   
- Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents  -(Peer Reviewed Journal)   Zhang, J., Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty Jr, J.C., Wedegaertner, T. 2019. Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents. Euphytica. 216:9. https://doi.org/10.1007/s10681-019-2547-6.   
- Registration of four upland cotton germplasm lines with elevated levels of seed oil oleic acid  -(Peer Reviewed Journal)   Dowd, M.K., McCarty Jr, J.C., Shockey, J., Jenkins, J.N. 2020. Registration of four upland cotton germplasm lines with elevated levels of seed oil oleic acid. Journal of Plant Registrations. 14(1):64-71. https://doi.org/10.1002/plr2.20017.   
- Registration of RMBHMTUP-C4 a Random Mated Population with alleles from Four Gossypium Species introgressed into Upland Cotton Germplasm -(Germplasm Registration)     
- Cotton Improvement Conference, 1948-2018 and Cotton Genetics Research Award 1961-2018 -(Peer Reviewed Journal)     
- Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton  -(Peer Reviewed Journal)   Islam, M.S., Fang, D.D., Jenkins, J.N., Guo, J., Mccarty Jr, J.C., Jones, D.C. 2019. Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton. Molecular Genetics and Genomics. 295:67-69. https://doi.org/10.1007/s00438-019-01599-z.   
- Revealing GE interactions from trial data without replications  -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr, J.C. 2019. Revealing GE interactions from trial data without replications. Open Journal of Statistics. 9:407-419. https://doi.org/10.4236/ojs.2019.93027.   
- A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton  -(Peer Reviewed Journal)   Wubben, M., Thyssen, G.N., Callahan, F.E., Fang, D.D., Deng, D.D., Mccarty Jr, J.C., Li, P., Islam, M.S., Jenkins, J.N. 2019. A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton. Theoretical and Applied Genetics. 2019)132:1425–1434. https://doi.org/10.1007/s00122-019-03289-1.   
- Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population  -(Peer Reviewed Journal)   Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Florane, C.B. 2019. Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population. BMC Genomics. 20:112. https://doi.org/10.1186/s12864-019-5427-5.   
- Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.)  -(Peer Reviewed Journal)   Thyssen, G.N., Jenkins, J.N., McCarty, J.C., Zeng, L., Campbell, B.T., Delhom, C.D., Islam, M.S., Li, P., Jones, D.C., Condon, B.D., Fang, D.D. 2018. Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 132:989-999. https://doi.org/10.1007/s00122-018-3254-8.   
- Evaluation of a multi-parent advanced generation inter-cross (MAGIC) introgressed line population for Verticillium wilt resistance in Upland cotton  -(Peer Reviewed Journal)   Martinez, G.K., Abdelraheem, A., Darapuneni, M., Jenkins, J.N., McCarty Jr, J.C., Zhang, J. 2019. Evaluation of a multi-parent advanced generation inter-cross (MAGIC) introgressed line population for Verticillium wilt resistance in Upland cotton. Euphytica. 214:197. https://doi/10.1007/s10681-018-2278-0.   
- Genetic diversity of day-neutral converted landrace, Gossypium hirsutum L., accessions  -(Peer Reviewed Journal)   McCarty Jr, J.C., Deng, D.D., Jenkins, J.N., Geng, L. 2018. Genetic diversity of day-neutral converted landrace, Gossypium hirsutum L., accessions. Euphytica. 214:173. https://doi.org/10.1007/s10681-018-2264-6.   
- The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.)  -(Peer Reviewed Journal)   Thyssen, G.N., Naoumkina, M.A., McCarty, J.C., Jenkins, J.N., Florane, C.B., Li, P., Fang, D.D. 2018. The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.). Biomed Central (BMC) Plant Biology. 18:186. https://doi.org/10.1186/s12870-018-1414-2.   
- Cotton response to residual poultry litter: leaf area, nitrogen removal, and yield  -(Peer Reviewed Journal)   Read, J.J., Adeli, A., McCarty Jr, J.C., Feng, G.G. 2018. Cotton response to residual poultry litter: leaf area, nitrogen removal, and yield. Agronomy Journal. 110(6):2360-2368. https://doi.org/10.2134/agronj2018.05.0348.   
- Introgression of Gossypium barbadense L. into Upland cotton germplasm RMBUP-C4S1  -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr, J.C., Deng, D.D., Geng, L., Hayes, R.W., Jones, D.C., Mammadova, R. 2018. Introgression of Gossypium barbadense L. into Upland cotton germplasm RMBUP-C4S1. Euphytica. 214:118. https://doi.org/10.1007/s10681-018-2200-9.   
- Genetic control of flame retardancy in white lint cotton (gossypium hirsutum) -(Abstract Only)     
- Genetic and transcriptomic dissection of the fiber length trait using a cotton (Gossypium hirsutum L.) MAGIC population. -(Abstract Only)     
- Recent developments in fiber genomics of tetraploid cotton species  -(Book / Chapter)   Ayubov, M.S., Abdurakhmonov, I.Y., Sripathi, V.R., Saha, S., Norov, T.M., Buriev, Z.T., Shermatov, S.E., Ubaydullaeva, K.A., Mccarty Jr, J.C., Deng, D.D., Jenkins, J.N. 2017. Recent developments in fiber genomics of tetraploid cotton species. Cotton. 6:123-152. 10.5772/intechopen.72922.   
- A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton -(Abstract Only)     
- Genotypic comparisons of chromosomes 01, 04 and 18 from three tetraploid species of gossypium in topcrosses with five elite cultivars of G. hirsutum L  -(Peer Reviewed Journal)   Jenkins, J.N., Mccarty Jr, J.C., Campbell, B.T., Hayes, R.W., Wu, J., Saha, S., Stelly, D.M. 2017. Genotypic comparisons of chromosomes 01, 04 and 18 from three tetraploid species of gossypium in topcrosses with five elite cultivars of G. hirsutum L. Euphytica. 213:107.   
- Effects of plant density on boll retention and yield of cotton  -(Peer Reviewed Journal)   McCarty Jr, J.C., Jenkins, J.N., Hayes, R.W., Wubben, M. 2017. Effects of plant density on boll retention and yield of cotton. American Journal of Plant Sciences. 8:891-906.   
- The GhTT2_A07 gene is linked to the brown color and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibers -(Abstract Only)     
- Tri-species shuffling of chromosomes to study the effects on fiber traits using chromosome substitution lines -(Peer Reviewed Journal)   Saha, S., Wu, J., Jenkins, J.N., Mccarty Jr, J.C., Campbell, B.T., Hayes, R.W., Stelly, D.M. 2017. Tri-species shuffling of chromosomes to study the effects on fiber traits using chromosome substitution lines. Crop Science. 57(3):1211-1226.   
- Individual and combined contributions of the Renbarb1, Renbarb2, and Renbarb3 quantitative trait loci to reniform nematode (Rotylenchulus reniformis Linford & Oliveira) resistance in Upland Cotton (Gossypium hirsutum L.) -(Peer Reviewed Journal)   Wubben, M., McCarty Jr, J.C., Jenkins, J.N., Callahan, F.E., Deng, D.D. 2017. Individual and combined contributions of the Renbarb1, Renbarb2, and Renbarb3 quantitative trait loci to reniform nematode (Rotylenchulus reniformis Linford & Oliveira) resistance in Upland Cotton (Gossypium hirsutum L.). Euphytica. 213:1-9.   
- Genetic effects of chromosomes 01, 04, and 18 from three tetraploid gossypium species in topcrosses with five elite cultivars  -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr, J.C., Campbell, B.T., Hayes, R.W., Wu, J., Saha, S., Stelly, D. 2017. Genetic effects of chromosomes 01, 04, and 18 from three tetraploid gossypium species in topcrosses with five elite cultivars. Crop Science. 57:1338-1346.   
- Four chromosome-specific (Gossypium barbadense chromosome 5sh) Upland cotton RILs with improved elongation  -(Peer Reviewed Journal)   Saha, S., Jenkins, J.N., McCarty Jr, J.C., Hayes, R.W., Stelly, D.M., Campbell, B.T. 2017. Four chromosome-specific (Gossypium barbadense chromosome 5sh) Upland cotton RILs with improved elongation. Journal of Plant Registrations. 11(2):165-167.   
- Registration of six germplasm lines of cotton, Gosspyium hirsutum L. with resistance to root-knot and reniform nematodes  -(Germplasm Registration)   Mccarty Jr, J.C., Jenkins, J.N., Wubben, M., Hayes, R.W., Callahan, F.E., Deng, D.D. 2017. Registration of six germplasm lines of cotton, Gosspyium hirsutum L. with resistance to root-knot and reniform nematodes. Journal of Plant Registrations. 11:168-171.   
- A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton  -(Peer Reviewed Journal)   Islam, M.S., Thyssen, G.N., Jenkins, J.N., Zeng, L., Delhom, C.D., McCarty, J.C., Deng, D.D., Hinchliffe, D.J., Jones, D.C., Fang, D.D. 2016. A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton. BMC Genomics. 17:903. https://doi.org/10.1186/s12864-016-3249-2.   
- The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres -(Peer Reviewed Journal)   Hinchliffe, D.J., Condon, B.D., Thyssen, G.N., Naoumkina, M.A., Madison, C.A., Reynolds, M.L., Delhom, C.D., Fang, D.D., Li, P., McCarty Jr, J.C. 2016. The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres. Journal of Experimental Botany. 67(18):5461-5471.   
- Subsurface banding, placement of pelletized poultry litter in cotton  -(Peer Reviewed Journal)   Adeli, A., Mccarty Jr, J.C., Read, J.J., Willers, J.L., Jenkins, J.N., Feng, G.G. 2016. Subsurface banding, placement of pelletized poultry litter in cotton. Agronomy Journal. 108(4):1356-1366.   
- High resistance to thermal decomposition in brown cotton is linked to tannins and sodium content -(Peer Reviewed Journal)   Nam, S., Kim, H.J., Condon, B.D., Hinchliffe, D.J., Chang, S., Mccarty, J.C., Madison, C.A. 2016. High resistance to thermal decomposition in brown cotton is linked to tannis and sodium content. Cellulose. 23(2):1137-1152.   
- Field experimental design comparisons to detect field effects associated with agronomic traits in Upland cotton -(Peer Reviewed Journal)   Bondalapati, K.D., Jenkins, J.N., Mccarty Jr, J.C., Wu, J. 2015. Field experimental design comparisons to detect field effects associated with agronomic traits in Upland cotton. Euphytica. 206:747-757.   
- Soybean yield and nutrient utilization following long-term pelletized broiler litter application to cotton  -(Peer Reviewed Journal)   Adeli, A., Read, J.J., McCarty Jr., J.C., Jenkins, J.N., Feng, G.G. 2015. Soybean yield and nutrient utilization following long-term pelletized broiler litter application to cotton. Agronomy Journal. 107:1128-1134.   
- Precision litter application practices for cotton production and soil properties -(Abstract Only)   Adeli, A., Jenkins, J.N., Mccarty Jr, J.C., Read, J.J., Tewolde, H. 2014. Precision litter application practices for cotton production and soil properties. American Society of Agronomy Abstracts. November 2-5, 2014, Longbeach, CA.   
- Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.) -(Peer Reviewed Journal)   Fang, D.D., Jenkins, J.N., Deng, D.D., McCarty Jr, J.C., Li, P., Wu, J. 2014. Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 15:397.   
- Registration of RMPAP-C4, a random-mated primitive race accession cotton germplasm population  -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N., Gutierrez, O.A., Hayes, R.W. 2014. Registration of RMPAP-C4, a random-mated primitive race accession cotton germplasm population. Journal of Plant Registrations. 8:313-317.   
- Introgression genetics and breeding between Upland and Pima cotton: a review -(Peer Reviewed Journal)   Zhang, J., Percy, R.G., McCarty Jr, J.C. 2014. Introgression genetics and breeding between Upland and Pima cotton: A review. Euphytica. 198:1-12.   
- Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton -(Abstract Only)   Nichols, R.L., Bell, A.A., Creech, R.C., Chee, P.W., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J., Lawrence, K.L., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Thaxton, P., Ulloa, M., Wallace, T., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton. Proceedings of the Beltwide Cotton Conferences. CDROM.   
- Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton -(Abstract Only)   Nichols, R.L., Bell, A.A., Creech, R.G., Chee, P., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J.E., Lawrence, K.S., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Smith-Thaxton, P., Ulloa, M., Wallace, T.P., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton [abstract]. Beltwide Cotton Conferences, January 6-8, 2014, New Orleans, LA. p. 662.   
- Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.) -(Peer Reviewed Journal)   Thyssen, G.N., McCarty, J.C., Li, P., Jenkins, J.N., Fang, D.D. 2014. Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.). Molecular Breeding. 33:341-348.   
- Efect of tri-species chromosome shuffling on agronomic and fiber traits in Upland cotton -(Abstract Only)     
- Pollen genotyping in cotton for genetic linkage analysis -(Abstract Only)   Aziz, A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2013. Pollen genotyping in cotton for genetic linkage analysis. Proceedings Research: Celebrating Excellence, April 1-5, 2013, Nashville, TN. CD ROM.   
- Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars -(Proceedings)   Xu, Y., Jenkins, J.N., McCarty Jr, J.C., Wu, J. 2013. Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars. In: W. Song, editors.  Proceedings Twenty-fourth Annual Kansas State University Conference on Applied Statistics in Agriculture, April 29-May 1, 2012, Manhattan, Kansas.  p. 309-320.   
- Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Jones, D.C. 2013. Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm. Journal of Plant Registrations. 7:224-228.   
- Genetic analysis without replications: Model evaluation and application in spring wheat -(Peer Reviewed Journal)   Wu, J., Bondalapati, K., Glover, K., Berzonsky, W., Jenkins, J.N., McCarty, J.C. 2013. Genetic analysis without replications: model evaluation and application in spring wheat. Euphytica. 190:447-458.   
- Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N., Wubben, M., Gutierrez, O.A., Hayes, R.W., Callahan, F.E., Deng, D.D. 2013. Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode. Journal of Plant Registrations. 7:220-223.   
- Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines -(Peer Reviewed Journal)   Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2013. Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 126:109-117.   
- Detecting epistatic effects associated with cotton traits by a modified MDR approach -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Glover, K. 2012. Detecting epistatic effects associated with cotton traits by a modified MDR approach. Euphytica. 187:289-301.   
- Association of SSR markers with important fiber traits in Upland cotton -(Abstract Only)   Saha, S., Emgamberdiev, S.S., Wu, J., Jenkins, J.N., McCarty Jr, J.C., Deng, D.D., Abdurakhmonov, I. 2012. Association of SSR markers with important fiber traits in Upland cotton [abstract]. National Cotton Council Beltwide Cotton Conference. p. 754.   
- Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in topcrosses with five elite Upland cotton G. hirsutum L. cultivars -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr, J.C., Wu, J., Hayes, R.W., Stelly, D. 2012. Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in top crosses with five elite Upland cotton G. hirsutum L. cultivars. Euphytica. 187:161-173.   
- Evaluation of precision litter application practices for cotton production and soil properties -(Abstract Only)   Adeli, A., Jenkins, J.N., McCarty Jr., J.C., Tewolde, H., Read, J.J. 2012. Evaluation of precision litter application practices for cotton production and soil properties. National Cotton Council Beltwide Cotton Conference, January 3-6, 2012, Orlando, FL. CD-ROM.   
- Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement -(Abstract Only)   Saha, S., Stelly, D.M., Raska, D., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Abdusalom, M., Gotmare, V., Abdurakhmonov, I.Y., Campbell, B.T. 2011. Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement. Proceedings World Cotton Research Conference-5. p. 129.   
- Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode -(Germplasm Registration)   McCarty, Jr., J.C., Jenkins, J.N., Wubben, M., Hayes, R.W., Lafoe, M. 2012. Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode. Journal of Plant Registrations. 6:85-87.   
- Chromosome substituution lines:  Concept, development and utilization in the genetic improvement of upland cotton -(Book / Chapter)   Saha, S., Stelly, D.M., Raska, D.A., Wu, J., Jenkins, J.N., McCarty, Jr., J.C., Makamov, A., Gotmare, V., Abudurakhmonov, I., Campbell, B.T. 2012. Chromosome substitution lines:  Concept, development and utilization in the genetic improvement of upland cotton. In: Abdurakhmoov, I.Y., editor. Plant Breeding. InTech. p. 107-128.   
- SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.) -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr., J.C., Wubben, M.J., Hayes, R.W., Gutierrez, O.A., Callahan, F.E., Deng, D.D. 2012. SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.). Euphytica. 183:49-54.   
- Comparisons of Four Approximation Algorithms for Large-Scale Linkage Map Construction -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Lou, X. 2011. Comparisons of four approximation algorithms for large-scale linkage map construction. Theoretical and Applied Genetics. 123:649-655.   
- Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines -(Abstract Only)   Aziz, A.N., Kommireddy, V.L., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2011. Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines. Proceedings 1890 Association of Research Directors, Biennial Research Symposium, April 9-11, 2011, Atlanta, GA. CD ROM.   
- Delineation of Interspecific Epistasis on Fiber Quality Traits in Gossypium hirsutum by ADAA Analysis of Intermated G. barbadense Chromosome Substitution Lines -(Peer Reviewed Journal)   Saha, S., Wu, J., Jenkins, J.N., McCarty, J.C., Hayes, R.W., Stelly, D.M. 2011. Delineation of interspecific epistasis on fiber quality traits in Gossypium hirsutum by ADAA analysis of intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 122:1351-1361.   
- Effects of within-row plant spacings on growth, boll retention, and yield of four cotton cultivars -(Peer Reviewed Journal)   McCarty Jr., J.C., Cash, L., Jenkins, J.N. 2011. Effects of within-row plant spacings on growth, boll retention, and yield of four cotton cultivars. Mississippi Agricultural and Forestry Experiment Station Bulletin 1191. 12 p.   
- A generalized approach and computer tool for quantitative genetics study -(Proceedings)   Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2011. A generalized approach and computer tool for quantitative genetics study. Proceedings Applied Statistics in Agriculture, April 25-27, 2010, Manhattan, KS. p.85-106.   
- Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes. Genetica. 138:1171-1179.   
- Interspecific Chromosome Substitution Lines as Genetic Resources for Improvement, Trait Analyses and Genomic Inference -(Abstract Only)     
- Identification of QTL Regions and SSR Markers Associated with Resistance to Reniform Nematode in Gossypium barbadense L. accession GB713 -(Peer Reviewed Journal)   Gutierrez, O., Robinson, A.F., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Callahan, F.E., Nichols, R.L. 2011. Identification of QTL regions and SSR markers associated with resistance to reniform nematode in Gossypium barbadense L. accession GB713. Theoretical and Applied Genetics. 122:271-280.   
- QTL Analysis of Resistance to Reniform Nematode in Gossypium barbadense L. Accession GB713 -(Abstract Only)   Gutierrez, O.A., Robinson, A.F., Jenkins, J.N., McCarty Jr, J.C., Wubben, M., Callahan, F.E. 2010. QTL analysis of resistance to reniform nematode in Gossypium barbadense L. accession GB713. Agronomy Abstracts, American Society of Agronomy, October 31-November 3, 2010, Longbeach, CA. CD ROM.   
- SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton -(Peer Reviewed Journal)   Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Hayes, R.W., Callahan, F.E. 2010. SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton. Theoretical and Applied Genetics. 121:1323-1337.   
- Atypical Ligon Lintless-2 Phenotype in Cotton -(Peer Reviewed Journal)   An, C., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Atypical Ligon Lintless-2 Phenotype in Cotton. Journal of Cotton Science. 14:13-16.   
- Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits -(Peer Reviewed Journal)   Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Hayes, R.W., Stelly, D. 2010. Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits. Journal of Theoretical and Applied Genetics. 120:1193-1205.   
- Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses -(Peer Reviewed Journal)   Wu, J., McCarty Jr., J.C., Jenkins, J.N. 2010. Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses. Theoretical and Applied Genetics. 120:1473-1483.   
- Breeding potential of introgressions into cotton:  genetic effects and heterosis -(Peer Reviewed Journal)   Wu, J., McCarty Jr, J.C., Jenkins, J.N., Meredith Jr, W.R. 2010. Breeding potential of introgressions into cotton: genetic effects and heterosis. Plant Breeding. 129:526-532.   
- Use of fiber and fuzz mutants to detect QTL for yield components, seed, and fiber traits of Upland cotton -(Peer Reviewed Journal)   An, C., Jenkins, J.N., Wu, J., Guo, Y., McCarty Jr., J.C. 2010. Use of Fiber and Fuzz Mutants to Detect QTL for Yield Components, Seed, and Fiber Traits of Upland Cotton. Euphytica. 172:21-34.   
- Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr., J.C., Wu, J., Gutierrez, O. 2009. Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids. Euphytica. 167:397-408.   
- SSR-FACILITATED IDENTIFICATION OF INTERSPECIFIC HYPOANEUPLOID HYBRIDS OF GOSSYPIUM HIRSUTUM X G. TOMENTOSUM NUTT. -(Peer Reviewed Journal)   Gutierrez, O.A., Stelly, D.M., Saha, S., Jenkins, J.N., McCarty Jr., J.C., Raska, D.A., Scheffler, B.E. 2009. Integrative placement and orientation of non-redundant SSR loci in cotton linkage groups by deficiency analysis. Molecular Breeding. 23:693-707.   
- Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Thaxton, P. 2009. Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background. Euphytica. 167:371-380.   
- Genetic changes in plant growth and their associations with chromosomes from Gossypium hirsutum L. in G. hirsutum L. -(Peer Reviewed Journal)   Wu, J., McCarty Jr., J.C., Saha, S., Jenkins, J.N., Hayes, R.W. 2009. Genetic Changes in Plant Growth and their Associations with Chromosomes from Gossypium hirsutum L. in G. hirsutum L. Genetica. 137:56-66.   
- Testing variance components by two jackknife methods -(Proceedings)   Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2009. Testing variance components by two jackknife methods. In: Applied Statistics In Agriculture Conference Proceedings, April 27-29, 2008, Manhattan, KS. pp. 1-17.   
- Status of the USA cotton germplasm collection and crop vulnerability -(Peer Reviewed Journal)   Wallace, T.P., Bowman, D., Campbell, B.T., Chee, P., Gutierrez, O.A., Kohel, R.J., McCarty, J., Myers, G., Percy, R., Robinson, F., Smith, W., Stelly, D.M., Stewart, J.M., Thaxton, P., Ulloa, M., Weaver, D.B. 2009. Status of the USA cotton germplasm collection and crop vulnerability. Genetic Resources and Crop Evolution 56:507-532.   
- Genetic detection of node of first fruiting branch in crosses of a cultivar with two exotic accessions of Upland cotton -(Peer Reviewed Journal)   Guo, Y., McCarty Jr., J.C., Jenkins, J.N., An, C., Saha, S. 2009. Genetic detection of node of first fruiting branch in crosses of a cultivar with two exotic accessions of upland cotton. Euphytica. 166:317-329.   
- Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton -(Peer Reviewed Journal)   Wu, J., Gutierrez, O. A., Jenkins, J.N., McCarty Jr., J.C., Zhu, J. 2009. Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton. Euphytica. 165:231-245.   
- Registration of RMUP-C5, a random mated population of Upland cotton germplasm -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Bowman, D.T., Watson, C.E., Jones, D.C. 2008. Registration of RMUP-C5, a random mated population of Upland cotton germplasm. Journal of Plant Registrations. 2:239-242.   
- Interspecific chromosome substitution lines as genetic resources for improvement, trait analysis and genomic inference -(Abstract Only)   Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Interspecific chromosome substitution lines as genetic resources for improvement, trait analysis and genomic inference [abstract]. Cotton Science. 20(S):84.   
- Chromosome substitution lines:  useful genomic resources in cotton -(Abstract Only)   Saha, S., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Chromosome substitution lines:  useful genomic resources in cotton [abstract]. Cotton Science. 20(S):111.   
- A novel allele of Li-2 producing different types of fibers in cotton seeds in different branches of the same plant -(Abstract Only)   An, C., Jenkins, J.N., Saha, S., McCarty Jr., J.C. 2008. A novel allele of Li-2 producing different types of fibers in cotton seeds in different branches of the same plant [abstract]. Agronomy Abstracts. CD-ROM.   
- Enhancement and diversity of primitive cotton, Gossypium hirsutum L., accessions -(Proceedings)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2008. Enhancement and diversity of primitive cotton, Gossypium hirsutum L., accessions.  In Proceedings 18th EUCARPIA General Congress - Modern Vareity Breeding for Present and Future Needs, Septembeer 9-12, 2008, Valencia, Spain. p. 185-189.   
- Interspecific chromosome substitution lines in the genetic improvement of Upland cotton -(Abstract Only)   Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Interspecific chromosome substitution lines in the genetic improvement of Upland cotton. Agronomy Abstracts. Paper No. 718-8.   
- Genetic analysis of agronomic and fiber traits using four interspecific chromosome substitution lines -(Peer Reviewed Journal)   Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Stelly, D.M. 2008. Genetic analysis of agronomic and fiber traits using four interspecific chromosome substitution lines in cotton. Plant Breeding. 127:612-618.   
- Genetic association of lint yield with its components in cotton chromosome substitution lines -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Percy, R.G. 2008. Genetic association of lint yield with its components in cotton chromosome substitution lines. Euphytica. 164:199-207.   
- Evaluation of cotton chromosome substitution lines crossed with high fiber strength lines -(Abstract Only)   Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2008. Evaluation of cotton chromosome substitution lines crossed with high fiber strength lines [abstract]. National Cotton Council Beltwide Cotton Conference. p. 904.   
- Chromosome substitution lines (CS-B) revealed the presence of cryptic beneficial alleles in G. barbadense with potential to increase lint and seedcotton yield in Upland cotton -(Abstract Only)   Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2008. Chromosome substitution lines (CS-B) revealed the presence of cryptic beneficial alleles in G. barbadense with potential to increase lint and seed cotton yield in Upland cotton [abstract]. National Cotton Council Beltwide Cotton Conference. p. 831.   
- QTL for node of first fruiting branch in a cross of an Upland cotton, Gossypium hirsutum L., cultivar with primitive accession Texas 701 -(Peer Reviewed Journal)   Guo, Y., McCarty Jr., J.C., Jenkins, J.N., Saha, S. 2008. QTLs for node of first fruiting branch in a cross of an upland cotton, Gossypium hirsutum L., cultivar with primitive accession Texas 701. Euphytica. 163:113-122.   
- Evaluation of cotton populations for agronomic and fiber traits after different cycles of random mating -(Experiment Station)   McCarty Jr., J.C., Jenkins, J.N., Wu, J., Gutierrez, O.A., Hayes, R.W. 2008. Evaluation of cotton populations for agronomic and fiber traits after different cycles of random mating. Mississippi Agricultural and Forestry Experiment Station Bulletin 1168. 16 p.   
- Genetic associations of cotton yield with its component traits in derived primitive accessions crossed by elite Upland cultivars using the conditional ADAA genetic model -(Peer Reviewed Journal)   McCarty Jr., J.C., Wu, J., Jenkins, J.N. 2008. Genetic association of cotton yield with its component traits in derived primitive accessions crossed by elite Upland cultivars using the conditional ADAA genetic model. Euphytica. 161:337-352.   
- Association of seed traits with specific Pima 3-79 chromosomes in a TM-1 background -(Abstract Only)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Thaxton, P. 2007. Association of seed traits with specific Pima 3-79 chromosomes in a TM-1 background. Agronomy Abstracts. CD-ROM.   
- Development of Reniform Nematode Resistance in Upland Cotton -(Review Article)   Robinson, A.F., Augudelo, P., Avila, C.A., Bell, A.A., Callahan, F.E., Cook, C.G., Dighe, N.D., Gutierrez, O.A., Hayes, R.W., Jenkins, J.N., Johnson, J.T., Kantety, R., Lawrence, G.W., Lawrence, K.S., Mangineni, L., Mccarty, J.C., Menz, M.A., Meredith, W.A., Nichols, R.L., Robbins, R.T., Sacks, E., Scheffler, B., Sciumbato, G.L., Smith, C.W., Starr, J.L., Stelly, D.M., Stetina, S.R., Stewart, J.M., Thaxton, P.M., Wallace, T.P., Weaver, D.B., Wubben, M.J., Young, L.D. 2008.  Development of reniform nematode resistance in Upland cotton. In: Proceedings of the World Cotton Research Conference-4, September 10-14, 2007, Lubbock, Texas. 2008 CDROM.   
- Notice of release of RMUP-C5, a random mated population of Upland cotton germplasm -(Germplasm Release)   Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Bowman, D.T., Watson, C.E., Jones, D. 2007. Notice of release of RMUP-C5, a random mated population of Upland cotton germplasm. USDA, Mississippi Agricultural and Forestry Experiment Station, North Carolina Agricultural Research Service, and Cotton, Inc. Germplasm Release. 4/30/07.  6 p.   
- GENETIC EFFECTS OF THIRTEEN GOSSYPIUM BARBADENSE L. CHROMOSOME SUBSTITUTION LINES IN TOPCROSSES WITH UPLAND COTTON CULTIVARS:  II. FIBER QUALITY TRAITS -(Peer Reviewed Journal)   Jenkins, J.N., McCarty Jr., J.C., Wu, J., Saha, S., Gutierrez, O.A., Hayes, R.W., Stelly, D.M. 2007. Genetic effects of thirteen Gossypium barbadense L. chromosome substitution lines in topcrosses with upland cotton cultivars:  II. Fiber quality traits. Crop Science. 47:561-572.   
- Registration of MS-01RKN, MS-24RKN, MS-30RKN, MS-33RKN, MS-35RKN and MS-37RKN cotton germplasm lines with resistance to root-knot nematode -(Peer Reviewed Journal)   Creech, R.G., Jenkins, J.N., McCarty Jr., J.C., Hayes, R.W., Creech, J.B., Haire, D., Cantrell, R. 2007. Registration of MS-01RKN, MS-24RKN, MS-30RKN, MS-33RKN, MS-35RKN and MS-37RKN cotton germplasm lines with resistance to root-knot nematode. Journal of Plant Registrations. 1:147-148.   
- Development and release of C5 breeding populations of cotton developed through random mating -(Abstract Only)   Gutierrez, O., Jenkins, J.N., McCarty Jr., J.C., Bowman, D.T., Watson, C.E., Jones, D.C., Cantrell, R. 2007. Development and release of C5 breeding populations of cotton developed through random mating [abstract]. National Cotton Council Beltwide Cotton Conference. p. 639.   
- Determination of chromosome effects for cotton cultivars crossed with chromosome substitution lines and TM-1 -(Abstract Only)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Wallace, T. 2007. Determination of chromosome effects for cotton cultivars crossed with chromosome substitution lines and TM-1 [abstract]. National Cotton Council Beltwide Cotton Conference. p. 2115.   
- Association of flowering time genes with simple sequence repeat markers in a primitive cotton accession (Gossypium hirsutum L.) -(Abstract Only)   Guo, Y., MCcarty Jr., J.C., Jenkins, J.N., Saha, S., Wu, J. 2007. QTL analyses of flowering time in a primitive cotton accession (Gossypium hirsutum L.)[Abstract]. National Cotton Council Beltwide Cotton Conference. p. 231.   
- USE OF PRIMITIVE DERIVED COTTON ACCESSIONS FOR AGRONOMIC AND FIBER TRAITS IMPROVEMENT: VARIANCE COMPONENTS AND GENETIC EFFECTS -(Peer Reviewed Journal)   McCarty Jr., J.C., Wu, J., Jenkins, J.N. 2007. Use of primitive derived cotton accessions for agronomic and fiber traits improvement: Variance components and genetic effects. Crop Science. 47:100-110.   
- Notice of release of six root-knot nematode resistant upland cotton germplasm lines -(Germplasm Release)   Jenkins, J.N., MCcarty Jr., J.C., Hayes, R.W., Creech, R.G., Creech, J.B., Haire, D.L. 2006. Notice of release of six root-knot nematode resistant upland cotton germplasm lines. USDA and Mississippi Agricultural and Forestry Experiment Station Germplasm Release. 11/14/2006.  3 p.   
- INTERSPECIFIC CHROMOSOME SUBSTITUTION LINES IN UPLAND COTTON IMPROVEMENT -(Abstract Only)   Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2006. Interspecific chromosome substitution lines in upland cotton improvement. International Cotton Genome Initiative Workshop. p. 11.   
- AFLP MARKER ASSOCIATIONS WITH AGRONOMIC AND FIBER TRAITS IN DAY-NEUTRAL PRIMITIVE ACCESSIONS AND COTTON CULTIVARS -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Zhong, M., Swindle, M. 2007. AFLP marker associations with agronomic and fiber traits in cotton. Euphytica. 153:153-163.   
- ASSOCIATION OF ROOT-KNOT NEMATODE RESISTANCE GENES WITH SSR MARKERS ON TWO CHROMOSOMES IN COTTON -(Peer Reviewed Journal)   Ynturi, P., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Saha, S. 2006. Association of root-knot nematode resistance genes with simple sequence repeat markers on two chromosomes in cotton. Crop Science. 46:2670-2674.   
- BULKED-POLLEN METHODOLOGY FOR THE DEVELOPMENT OF RANDOM MATING POPULATIONS IN COTTON -(Peer Reviewed Journal)   Gutierrez, O.A., Bowman, D.T., Cole, C.B., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Watson, C.E. 2006. Development of random-mated populations using bulked pollen methodology: Cotton as a model. Journal of Cotton Science. 10:175-179.   
- EFFECTS OF CHROMOSOME 5SH FROM GOSSYPIUM HIRSUTUM L. ON FLOWER PRODUCTION IN G. HIRSUTUM L. -(Peer Reviewed Journal)   McCarty Jr., J.C., Wu, J., Saha, S., Jenkins, J.N., Hayes, R.W. 2006. Effects of chromosome 5sh from Gossypium hirsutum L. on flower production in G. hirsutum L. Euphytica. 152:99-107.   
- COMBINING ABILITY OF 13 GOSSYPIUM BARBADENSE L. CHROMOSOMES SUBSTITUTED INTO G. HIRSUTUM L. WHEN TOPCROSSED WITH FIVE DIVERSE CULTIVARS: YIELD AND YIELD COMPONENTS -(Peer Reviewed Journal)   Jenkins, J.N., Wu, J., McCarty Jr., J.C., Saha, S., Gutierrez, O.A., Hayes, R.W., Stelly, D.M. 2006. Genetic effects of thirteen Gossypium hirsutum L. chromosome substitution lines in topcrosses with upland cotton cultivars:  I. Yield and yield components. Crop Science. 46:1169-1178.   
- AN INTRASPECIFIC SSR LINKAGE MAP OF COTTON -(Abstract Only)   Gutierrez, O.A., Wu, J., Jenkins, J.N., McCarty, Jr., J.C., Raska, D.A., Stelly, D.M. 2006. An intraspecific SSR linkage map of cotton. National Cotton Council Beltwide Cotton Conference. p. 826.   
- EFFECT OF CHROMOSOME SPECIFIC INTROGRESSION IN UPLAND COTTON ON FIBER AND AGRONOMIC TRAITS -(Peer Reviewed Journal)   Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Gutierrez, O.A., Percy, R.G., Cantrell, R.G., Stelly, D.M. 2006. Effects of chromosome-specific introgression in upland cotton on fiber and agronomic traits. Genetics. 172:1927-1938.   
- GENETIC DIVERSITY FOR AGRONOMIC AND FIBER TRAITS IN DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM ACCESSIONS -(Peer Reviewed Journal)   McCarty, J.C., Wu, J., Jenkins, J.N. 2006. Genetic diversity for agronomic and fiber traits in day-neutral primitive cotton germplasm. Euphytica. 148:283-293.   
- SSR-FACILITATED GOSSYPUM HIRSUTUM L. MARKER LOCALIZATION AND LINKAGE GROUP IDENTIFICATION USING INTERSPECIFIC HYPOANEUPLOID HYBRIDS -(Abstract Only)   Gutierrez, O.A., Saha, S., Jenkins, J.N., MCcarty Jr., J.C., Raska, D.A., Stelly, D.M. 2006. SSR-facilitated Gossypum hirsutum L. marker localization and linkage group identification using interspecific hypoaneuploid hybrids [abstract]. Plant and Animal Genome VX Conference Abstracts. CD-ROM.   
- AN SSR LINKAGE MAP OF UPLAND COTTON, GOSSYPIUM HIRSUTUM L. -(Abstract Only)   Gutierrez, O.A., Wu, J., Jenkins, J.N., McCarty Jr, J.C., Raska, D.A., Stelly, D.M. 2005. An SSR linkage map of upland cotton, Gossypium hirsutum L. [abstract]. Agronomy Abstracts. Abstract No. 48-6.   
- A RESURSIVE APPROACH TO DETECT MULTIVARIABLE CONDITIONAL VARIANCE COMPONENTS AND CONDITIONAL RANDOM EFFECTS -(Peer Reviewed Journal)   Wu, J., Wu, D., Jenkins, J.N., McCarty Jr., J.C. 2006. A recursive approach to detect multivariable conditional variance components and conditional random effects. Computational Statistics and Data Analysis. 50:285-300.   
- VARIANCE COMPONENT ESTIMATION USING THE ADAA MODEL WHEN GENOTYPES VARY ACROSS ENVIRONMENTS -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Wu, D. 2006. Variance component estimation using the additive, dominance, and additive x additive model when genotypes vary across environments. Crop Science. 46:174-179.   
- A NEW GENETIC MODEL TO DETERMINE CHROMOSOMAL EFFECTS IN CHROMOSOME SUBSTITUTION LINES AND OTHER GERMPLASMS -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Stelly, D.M. 2006. An additive-dominance model to determine chromosomal effects in chromosome substitution lines and other germplasms. Theoretical and Applied Genetics. 112:391-399.   
- REGISTRATION OF 17 UPLAND (GOSSYPIUM HIRSUTUM) COTTON GERMLASM LINES DISOMIC FOR DIFFERENT G. BARBADENSE CHROMOSOME OR ARM SUBSTITUTIONS -(Peer Reviewed Journal)   Stelly, D.M., Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A. 2005. Registration of 17 upland (Gossypium hirsutum) cotton germplasm lines disomic for different G. barbadense chromosome or arm substitutions. Crop Science. 45:2663-2665.   
- REGISTRATION OF 14 PRIMITIVE DERIVED COTTON GERMPLASM LINES WITH IMPROVED FIBER STRENGTH -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N. 2005. Registration of 14 primitive derived cotton germplasm lines with improved fiber strength. Crop Science. 45:2668.   
- COMPARISONS OF TWO STATISTICAL MODELS FOR EVALUATING BOLL RETENTION IN COTTON -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Watson, C.E. 2005. Comparisons of two statistical models for evaluating boll retention in cotton. Agronomy Journal. 97:1291-1294.   
- REGISTRATION OF 21 DAY LENGTH-NEUTRAL FLOWERING PRIMITIVE COTTON GERMPLASM LINES -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N. 2005. Registration of 21 day length-neutral flowering primitive cotton germplasm lines. Crop Science. 45:2134.   
- POTENTIAL OF PRIMITIVE ACCESSIONS FOR COTTON IMPROVEMENT -(Experiment Station)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2005. Potential of primitive accessions for cotton improvement. Mississippi Agricultural and Forestry Experiment Station Technical Bulletin 1141. 22 p.   
- EVALUATING AMERICAN AND CHINA COTTON CULTIVARS AND THEIR CROSSES FOR IMPROVEMENT -(Peer Reviewed Journal)   McCarty Jr., J.C., Wu, J., Jenkins, J.N., Guo, X. 2005. Evaluating American and China cotton cultivars and their crosses for improvement. Cotton Science. 17:47-55.   
- INFLUENCE OF FOUR PLANT POPULATIONS ON BOLL RETENTION AND LINT YIELD ON FOUR COMMERCIAL CULTIVARS -(Abstract Only)   Cash, L., Jenkins, J.N., McCarty Jr., J.C. 2005. Influence of four plant populations on boll retention and lint yield on four commercial cultivars [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1019.   
- RESISTANCE TO RENIFORM NEMATODE IN EXOTIC COTTON LINES -(Abstract Only)   Lafoe, J.M., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Robinson, A.F. 2005. Resistance to reniform nematode in exotic cotton lines [abstract]. National Cotton Council Beltwide Cotton Conference. p.1068.   
- EFFECTS OF VIP ON SELECTED COTTON INSECT PESTS IN FIELD AND LABORATORY EXPERIMENTS -(Abstract Only)   Jenkins, J.N., McCarty Jr., J.C. 2005. Effects of VIP on selected cotton insect pests in field and laboratory experiments [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1046.   
- MIXED MODEL BASED CONDITIONAL ANALYSIS FOR COMPLEX TRAITS -(Abstract Only)   Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Mixed model based conditional analysis for complex traits [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1010.   
- GROWTH AND FRUITING HABITS OF DP 555 BG/RR IN VARIOUS ROW PATTERNS AND PLANT SPACINGS -(Abstract Only)   Miller, H.T., Jenkins, J.N., McCarty Jr., J.C. 2005. Growth and fruiting habits of DP 555 BG/RR in various row patterns and plant spacings [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1001.   
- DETECTION OF RENIFORM NEMATODE RESISTANCE IN PRIMITIVE GOSSYPIUM HIRSUTUM AND G. BARBADENSE DURING A SURVEY OF THE U.S. NATIONAL COTTON COLLECTION AND INITIATION OF RESEARCH TO INCORPORATE RESISTANCE INTO AGRONOMIC COTTON -(Abstract Only)   Robinson, A.F., Bridges, A.C., Percival, A.E., Gutierrez, O.A., LaFoe, J.M., McCarty, Jr., J.C., Jenkins, J.N. 2005. Detection of reniform nematode resistance in primitive Gossypium hirsutum and G. barbadense during a survey of the U.S. National Cotton Collection and initiation of research to incorporate resistance into agronomic cotton [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.   
- DEVELOPMENT OF BREEDING POPULATIONS IN COTTON THROUGH RANDOM MATING -(Abstract Only)   Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Bowman, D.T., Watson, C.E. 2005. Development of breeding populations in cotton through random mating [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1000.   
- A NEW METHOD FOR CONSTRUCTING LINKAGE MAPS FOR ORGANISMS WITH ACHIASMATIC GAMETOGENESIS -(Peer Reviewed Journal)   Wu, J., Zhu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Constructing linkage maps with achiasmatic gametogenesis. Acta Genetica Sinica. 32:608-615.   
- PRIMITIVE COTTON GERMPLASM:  YIELD AND FIBER TRAITS FOR TWENTY-ONE DAY-NEUTRAL ACCESSIONS -(Experiment Station)   McCarty Jr., J.C., Jenkins, J.N. 2004. Primitive cotton germplasm:  yield and fiber traits for twenty-one day-neutral accessions. Mississippi Agricultural and Forestry Experiment Station Research Report 23(14). 6 p.   
- ASSOCIATION OF AGRONOMIC AND FIBER TRAITS WITH SPECIFIC 3-79 (GOSSYPIUM BARBADENSE) CHROMOSOMES IN A TM-1 (G. HIRSUTUM) BACKGROUND -(Peer Reviewed Journal)   Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Stelly, D.M., Percy, R.G., Raska, D.A. 2004. Effect of chromosome substitutions from Gossypium hirsutum L. 3-79 into G. hirsutum L. TM-1 on agronomic and fiber traits. Journal of Crop Science. 8:162-169.   
- CYTOGENETIC RESOURCES IN DISSECTING COMPLEX QTLS AND ENHANCING GERMPLASM IN UPLAND COTTON -(Abstract Only)   Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Percy, R.G., Cantrell, R.G., Stelly, D.M. 2004. Cytogenetic resources in dissecting complex QTLs and enhancing germplasm in upland cotton. International Cotton Genome Initiative ICG-2004 Workshop Proceedings. p. 81.   
- USE OF PRIMITIVE ACCESSIONS IN COTTON IMPROVEMENT -(Proceedings)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Use of primitive accessions in cotton improvement. In: Fischer, T., editor. Proceedings 4th International Crop Science Congress, September 26-October 1, 2004, Brisbane, Australia. 2004 CDROM.   
- CHROMOSOME SUBSTITUTION LINES FROM GOSSYPIUM BARBADENSE L. AS SOURCES FOR G HIRSUTUM L. IMPROVEMENT -(Proceedings)   Jenkins, J.N., McCarty Jr., J.C., Wu, J., Saha, S., Stelly, D. Chromosome substitution lines from Gossypium barbadense L. as sources for G. hirsutum L. improvement. In: Fisher, T., editor. Proceedings 4th International Crop Science Congress, September 26-October 1, 2004, Brisbane, Australia. 2004 CDROM.   
- Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. -(Peer Reviewed Journal)   Ulloa, M., Saha, S., Jenkins, J.N., Meredith, Jr., W.R., McCarty, Jr., J.C., Stelly, D.M. 2005. Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. Journal of Heredity. 96(2):132-144.   
- GENETIC ASSOCIATION OF YIELD WITH ITS COMPONENT TRAITS IN A RECOMBINANT INBRED POPULATION OF COTTON -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., McCarty Jr., J.C., Zhu, J. 2004. Genetic association of yield with its component traits in a recombinant inbred population of cotton. Euphytica. 149:171-179.   
- NOTICE OF RELEASE OF 14 UPLAND COTTON, GOSSYPIUM HIRSUTUM L., PRIMITIVE DERIVED GERMPLASM LINES WITH IMPROVED FIBER STRENGTH -(Germplasm Release)   McCarty Jr., J.C., Jenkins, J.N. 2004. Notice of release of 14 upland cotton, Gossypium hirsutum L., primitive derived germplasm lines with improved fiber strength. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station. 7/29/04.   
- DISTRIBUTION OF BOLL NUMBER AND LINT YIELD BY TIME AND POSITION IN UPLAND COTTON CULTIVARS -(Proceedings)   Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Distribution of boll number and lint yield by time and position in upland cotton cultivars. Applied Statistics In Agriculture Conference Proceedings. p. 296-309.   
- CHROMOSOME SUBSTITUTION LINES:  IMPORTANT GENOMIC RESOURCES IN COTTON -(Abstract Only)   Saha, S., Jenkins, J.N., McCarty, Jr., J.C., Wu, J., Gutierrez, O.A., Cantrell, R.G., Percy, R.G., Stelly, D.M. 2004. Chromosome substitution lines: important genomic resources in cotton. Biotechnology Symposium Proceedings, Alabama A&M University. CD-ROM.   
- NOTICE OF RELEASE OF 17 GERMPLASM LINES OF UPLAND (GOSSYPIUM HIRSUTUM) COTTON, EACH WITH A DIFFERENT PAIR OF G. BARBADENSE CHROMOSOMES OR ARMS SUBSTITUTED FOR THE RESPECTIVE G. HIRSUTUM CHROMOSOMES OR ARMS -(Germplasm Release)   Stelly, D.M., Raska, W., Jenkins, J.N., McCarty, J.C., Gutierrez, O.A. Notice of release of 17 germplasm lines of upland (Gossypium hirsutum) cotton, each with a different pair of G. barbadense chromosomes or arms substituted for the respective G. hirsutum chromosomes or arms. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station, 5/04/04.   
- INHERITANCE OF ROOT-KNOT NEMATODE RESISTANCE IN M-315 RNR AND M78-RNR COTTON -(Peer Reviewed Journal)   McPherson, M.G., Jenkins, J.N., Watson, C.E., McCarty Jr., J.C. 2004. Inheritance of root-knot nematode resistance in M-315 RNR and M78-RNR cotton. Journal of Cotton Science. 8:154-161.   
- NOTICE OF RELEASE OF 21 BC4F4 NONCOMMERCIAL FLOWERING DAY NEUTRAL GERMPLASM LINES OF UPLAND COTTON INVOLVING GOSSYPIUM HIRSUTUM L. RACE ACCESSIONS -(Germplasm Release)   McCarty Jr., J.C., Jenkins, J.N. 2004. Notice of release of 21 Bc4f4 noncommercial flowering day neutral germplasm lines of upland cotton involving Gossypium hirsutum L. race accessions. Germplasm Release. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station, 3/22/04.   
- A RECOMBINANT INBRED POPULATION OF COTTON FOR QTL AND DNA MARKER ASSOCIATION -(Abstract Only)   Jenkins, J.N., Wu, J., McCarty Jr, J.C., Reddy, U., Zhu, J. 2004. A recombinant inbred population of cotton for QTL and DNA marker association. World Cotton Research Conference Proceedings. p. 352.   
- CHROMOSOME-SPECIFIC RESOURCES FOR GERMPLASM INTROGRESSION AND GENOMICS IN GOSSYPIUM -(Abstract Only)   Stelly, D.M., Saha, S., Raskal, D.A., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Percy, R.G., Gardunial, B., Dighel, N. 2004. Chromosome-specific resources for germplasm introgression and genomics in Gossypium [abstract]. Plant and Animal Genomes XII Conference Proceedings. Paper no. W187.   
- NOTICE OF RELEASE OF FOURTEEN GERMPLASM LINES OF COTTON WHICH HAVE ONE PAIR OF CHROMOSOMES OR ARMS FROM G. BARBADENSE SUBSTITUTED FOR THE RESPECTIVE G. HIRSUTUM CHROMOSOME OR ARM -(Abstract Only)   Stelly, D.M., Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr, J.C., Gutierrez, O.A. 2004. Notice of release of 17 germplasm lines of upland (Gossypium hirsutum), each with a different pair of G. barbadense chromosomes or arms substituted for the respective G. hirsutum chromosomes or arms. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1205-1207.   
- COMPARING TWO METHODS IN EVALUATION OF BOLL RETENTION -(Abstract Only)   Wu, J., Jenkins, J.N., McCarty Jr, J.C. 2004. Comparing two methods in evaluation of boll retentionm [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1118.   
- GROWTH AND FRUITING HABITS OF DP 555 BG/RR IN VARIOUS ROW PATTERNS AND PLANT SPACINGS -(Abstract Only)   Miller, H.T., Jenkins, J.N., McCarty Jr, J.C. 2004. Growth and fruiting habits of DP 555 BG/RR in various row patterns and plant spacings [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1117.   
- SEGREGATION FOR ROOT-KNOT NEMATODE RESISTANCE GENE(S)IN F2 POPULATIONS FROM RESISTANT X SUSCEPTIBLE CROSSES -(Abstract Only)   Ynturi, P., Jenkins, J.N., McCarty Jr, J.C., Saha, S. 2004. Segregation for root-knot nematode resistance gene(s)in F2 populations from resistant x susceptible crosses [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1112.   
- GENETIC DISTANCE AMONG COTTON CULTIVARS USED IN THE DEVELOPMENT OF RANDOM MATING POPULATIONS BASED ON SSR MARKERS AND COEFFICIENT OF PARENTAGE -(Abstract Only)   Gutierrez, O.A., Jenkins, J.N., McCarty Jr, J.C., Bowman, D.T., Watson, C.E. 2004. Genetic distance among cotton cultivars used in the development of random mating populations based on SSR markers and coefficient of parentage [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1061.   
- PRIMITIVE ACCESSION GERMPLASM BY CULTIVAR CROSSES AS SOURCES FOR COTTON IMPROVEMENT I:  PHENOTYPIC VALUES AND VARIANCE COMPONENTS -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: I.  Phenotypic values and variance components. Crop Science. 44:1226-1230.   
- PRIMITIVE ACCESSION GERMPLASM BY CULTIVAR CROSSES AS SOURCES FOR COTTON IMPROVEMENT II:  GENETIC EFFECTS AND GENOTYPIC VALUES -(Peer Reviewed Journal)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004.  Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: II. Genetic effects and genotypic values. Crop Science. 44:1231-1235.   
- SSR MARKER(S) ASSOCIATED WITH ROOT-KNOT NEMATODE RESISTANCE GENE(S) IN COTTON -(Peer Reviewed Journal)   Bezawada, C., Saha, S., Jenkins, J.N., Creech, R.C., McCarty, J.C. 2003. SSR marker(s) associated with root-knot nematode resistance gene(s) in cotton. Journal of Cotton Science. 7:179-184.   
- GENETICS AND COMBINING ABILITY OF YIELD AND FIBER PROPERTIES OF SELECTED   AMERICAN AND AUSTRALIAN COTTON GENOTYPES: I. GENETIC VARIANCE AND          COMBINING ABILITY -(Peer Reviewed Journal)   CHEATHAM, C.L., JENKINS, J.N., MCCARTY JR, J.C., WATSON, C.E., WU, J. GENETICS VARIANCES AND COMBINING ABILITY OF CROSSES AND AMERICAN CULTIVARS, AUSTRALIAN CULTIVARS, AND WILD COTTONS. JOURNAL OF COTTON SCIENCE. 2003. V.7.P.16-22.   
- COMPARISONS OF QUANTITATIVE TRAIT LOCUS MAPPING PROPERTIES BETWEEN TWO METHODS OF RECOMBINANT INBRED LINE DEVELOPMENT -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., Zhu, J., McCarty, J.C., Watson, C.E. 2003. Comparisons of quantitative trait locus mapping properties between two methods of recombinant inbred line development. Euphytica. 132:159-166.   
- PRIMITIVE ACCESSIONS OF COTTON AS GENETIC SOURCES FOR IMPROVING YIELD AND FIBER PROPERTIES -(Proceedings)   McCarty Jr, J.C., Jenkins, J.N., Wu, J. 2004. Primitive accessions of cotton as genetic sources for improving yield and fiber properties. World Cotton Research Conference Proceedings. p. 114-118.   
- CHROMOSOMAL EFFECT ON FIBER AND AGRONOMIC TRAITS UTILIZING GOSSYPIUM BARBADENSE CHROMOSOME-SPECIFIC F2 HYBRID POPULATION OF G. HIRSUTUM -(Proceedings)   Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr, J.C., Gutierrez, O.A., Percy, R.G., Cantrell, R.G., Wu, J., Zhu, J., Stelly, D.M. 2004. Effect of chromosome on important quantitative traits of agronomic and fiber traits using Gossypium barbadense chromosome-specific recombinant lines of Gossypium hirsutum. World Cotton Research Conference Proceedings. p. 170-174.   
- GENETICALLY BASED INCREASES IN COTTON PLANT LINT BIOSYNTHESIS -(Peer Reviewed Journal)   MCCARTY JR, J.C., HEDIN, P.A. GENETICALLY BASED INCREASES IN COTTON PLANT LINT BIOSYNTHESIS. MISSISSIPPI AGRICULTURAL AND FORESTRY EXPERIMENT STATION RESEARCH REPORT. 2003. v.20.4p.   
- MONTE CARLO SIMULATIONS ON MARKER GROUPING AND ORDERING -(Peer Reviewed Journal)   Wu, J., Jenkins, J.N., Zhu, J., McCarty, J.C., Watson, C.E. 2003. Monte carlo simulations on marker grouping and ordering. Theoretical Applied Genetics. 107:568-573.   
- USE OF PRIMITIVE ACCESSION OF COTTON AS SOURCES OF GENES FOR IMPROVING YIELD COMPONENTS AND FIBER PROPERTIES -(Experiment Station)   MCCARTY JR, J.C., JENKINS, J.N., WU, J. USE OF PRIMITIVE ACCESSIONS OF COTTON AS SOURCES OF GENES FOR IMPROVING YIELD COMPONENTS AND FIBER PROPERTIES. MISSISSIPPI AGRICULTURAL AND FORESTRY EXPERIMENT STATION TECHNICAL BULLETIN 1130. 2003. 17p.   
- WITHIN BOLL YIELD COMPONENTS OF SIX CULTIVARS OF COTTON AND THEIR F1 AND F2 PROGENY -(Abstract Only)   COLE, C.B., JENKINS, J.N., MCCARTY JR, J.C. WITHIN BOLL YIELD COMPONENTS OF SIX CULTIVARS OF COTTON AND THEIR F1 AND F2 PROGENY. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 824   
- APPLICATIONS OF MIXED LINEAR MODEL APPROACHES ON COTTON QUANTITATIVE GENETICS -(Abstract Only)   WU, J., JENKINS, J.N., MCCARTY JR, J.C., ZHU, J. APPLICATIONS OF MIXED LINEAR MODEL APPROACHES ON COTTON QUANTITATIVE GENETICS. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 825.   
- POTENTIAL USE OF BULKED-POLLEN METHODOLOGY IN COTTON -(Abstract Only)   GUTIERREZ, O.A., JENKINS, J.N., MCCARTY JR, J.C., BOWMAN, D.T., WATSON, C.E. POTENTIAL USE OF BULKED-POLLEN METHODOLOGY IN COTTON. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 784.   
- EST-SSR: USEFUL MARKERS FOR MOLECLAR MAPPING IN COTTON -(Abstract Only)   KATAM, R., QURESHI, S.N., WU, J., SAHA, S., JENKINS, J.N., MCCARTY JR, J.C., REDDY, U.K., KANTETY, R.V., ZHU, J. EST-SSR: USEFUL MARKERS FOR MOLECLAR MAPPING IN COTTON. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 884.   
- MOLECULAR CLONING, DIFFERENTIAL EXPRESSION, AND FUNCTIONAL CHARACTERIZATION OF A FAMILY OF CLASS I UBIQUITIN-CONJUGATING ENZYME (E2) GENES IN COTTON (GOSSYPIUM) -(Peer Reviewed Journal)   ZHANG, X., JENKINS, J.N., CALLAHAN, F.E., CREECH, R.G., SI, Y., MCCARTY JR, J.C., SAHA, S., MA, D. MOLECULAR CLONING, DIFFERENTIAL EXPRESSION, AND FUNCTIONAL CHARACTERIZATION OF A FAMILY OF CLASS I UBIQUITIN-CONJUGATING ENZYME (E2) GENES IN COTTON (GOSSYPIUM). BIOCHIMICA ET BIOPHYSICA ACTA. 2003.  v.1625.p.269-279.   
- PRIMITIVE ACCESSIONS OF COTTON AS GENETIC SOURCES FOR IMPROVING YIELD AND FIBER PROPERTIES -(Abstract Only)   McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Primitive accessions of cotton as genetic sources for improving yield and fiber properties. World Cotton Research Conference Proceedings. p. 113-118.   
- CHROMOSOME SUBSTITUTION LINES IN COTTON IMPROVEMENT -(Abstract Only)   Saha, S., Stelly, D.M., Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Cantrell, R.G., Percy, R.G., Raska, D.A. 2002. Chromosome substitution lines in cotton improvement. Cotton Science. 14(S): 78.   
- REGISTRATION OF 16 DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM LINES -(Peer Reviewed Journal)   MCCARTY JR, J.C., JENKINS, J.N. REGISTRATION OF 16 DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM LINES. CROP SCIENCE. 2002. v.42.p.1755-1756.   
- GENETIC DISTANCE OF COTTON BASED ON SSR MARKERS AND ITS RELATIONSHIP       WITH F2-HYBRID PERFORMANCE -(Peer Reviewed Journal)   GUTIERREZ, O.A., BASU, S., SAHA, S., JENKINS, J.N., SHOEMAKER, D.B., CHEATHAM, C.L., MCCARTY JR, J.C. GENETIC DISTANCE AMONG SELECTED GENOTYPES AND ITS RELATIONSHIP WITH F2 PERFORMANCE. CROP SCIENCE. 2002. V.42.P.1841-1847.   
- SEGREGATION OF DNA MARKERS AND THE DAY-NEUTRAL PHENOTYPE IN BACKCROSS      POPULATIONS OF COTTON -(Peer Reviewed Journal)   Zhong, M., McCarty Jr, J.C., Jenkins, J.N., Saha, S. 2002. Assessment of day-neutral backcross populations of cotton using AFLP markers. Journal of Cotton Science. 6:97-103.   
- SEPARATION OF SINGLE GENE EFFECTS FROM ADDITIVE-DOMINANCE GENETIC MODELS -(Proceedings)     
- A NOVEL STRATEGY FOR GENERAL SUSTAINABILITY AND RESISTANCE MANAGEMENT      IN PEST AND PATHOGEN RESISTANT CROPS -(Peer Reviewed Journal)     
- MOLECULAR MARKERS AND QUANTITATIVE TRAITS IN GOSSYPIUM HIRSUTUM L. -(Book / Chapter)     
- SSR BASED ASSESSMENT OF GENETIC DIVERSITY IN COTTON RACE STOCK ACCESSIONS -(Peer Reviewed Journal)     
- PRELIMINARY GENETIC STUDY FOR RECOMBINANT INBRED LINES OF UPLAND COTTON -(Abstract Only)     
- FRUITING CHARACTERISTICS OF SELECTED U.S. AND ACSI CULTIVARS AND THEIR     HYBRIDS -(Abstract Only)     
- EVALUATION OF AN EXPERIMENTAL PLANT GROWTH REGULATOR ON TWO CULTIVARS -(Abstract Only)     
- RESISTANCE TO TOBACCO BUDWORM IN EXOTIC COTTON GERMPLASM -(Abstract Only)     
- GENETIC VARIATION OF EARLY AND LATE SEASON BOLL RETENTION -(Abstract Only)     
- EVALUATION OF CULTIVAR BY RACE STOCK F2 HYBRIDS -(Abstract Only)     
- A COMPARATIVE STUDY INVOLVING TRANSGENIC LINES OF COTTON WITH AN           EMPHASIS ON MATURITY, YIELD, AND YIELD COMPONENTS -(Abstract Only)     
- GENES FROM EXOTIC GERMPLASM AND THEIR USES IN CULTIVAR IMPROVEMENT IN      GOSSYPIUM HIRSUTUM L. AND G. BARBADENSE L. -(Book / Chapter)     
- MINIMAL EFFECTS OF FOLIAR APPLICATIONS OF GIBBERELLIC ACID AND             CARBOHYDRATES ON THE YIELD OF COTTON (GOSSYPIUM HIRSUTUM L.) LINT -(Experiment Station)     
- GENETIC ASSOCIATION AMONG YIELD AND FRUITING TRAITS IN F2 HYBRID COTTON -(Abstract Only)     
- MOLECULAR MARKER BASED GENETIC ANALYSIS OF QTL'S USING RECOMBINANT INBRED  LINES IN COTTON -(Abstract Only)     
- NEMATODE RESISTANCE IN COTTON -(Book / Chapter)     
- AN RFLP AND QTL LINKAGE MAP IN GOSSYPIUM HIRSUTUM L. -(Proceedings)     
- CHROMOSOMAL LOCATION OF RFLP MARKERS LINKED TO QTL IN COTTON -(Proceedings)     
- DIVERSITY OF PRIMITIVE UPLAND COTTON GERMPLASM -(Proceedings)     
- QTL ASSOCIATED WITH AGRONOMIC AND FIBER TRAITS OF UPLAND COTTON            (GOSSYPIUM HIRSUTUM L.) -(Peer Reviewed Journal)     
- AN RFLP LINKAGE MAP OF UPLAND COTTON (GOSSYPIUM HIRSUTUM L.) -(Peer Reviewed Journal)     
- COTTON GERMPLASM:  ROOT-KNOT NEMATODE RESISTANCE IN DAY-NEUTRAL            PRIMITIVE ACCESSIONS -(Experiment Station)     
- INTROGRESSION OF DAY-NEUTRAL GENES IN PRIMITIVE COTTON ACCESSIONS:         I. GENETIC VARIANCES AND CORRELATIONS -(Peer Reviewed Journal)     
- INTROGRESSION OF DAY-NEUTRAL GENES IN PRIMITIVE COTTON ACCESSIONS:         II.  PREDICTED GENETIC EFFECTS -(Peer Reviewed Journal)     
- THRIPS (THYSANOPTERA: THRIPIDAE) TOLERANCE IN COTTON:  SOURCES AND         HERITABILITY -(Peer Reviewed Journal)     
- COTTON WITH DELTA ENDOTOXIN GENES FROM BACILLUS THURINGIENSIS KURSTAKI:    II.  INSECT RESISTANCE AND AGRONOMIC PERFORMANCE -(Peer Reviewed Journal)     
- DAMAGE AND BEHAVIORAL PATTERNS OF HELIOTHIS VIRESCENS AND                  HELICOVERPA ZEA ON UPLAND COTTON -(Abstract Only)     
- COMPARISON OF FIBER DEVELOPMENT AND BOLL MATURITY BY FRUITING SITES        OF AN EARLY AND FULL SEASON COTON CULTIVAR -(Abstract Only)     
- CALORIC ANALYSIS OF THE DISTRIBUTION OF ENERGY IN RIPENED COTTON -(Proceedings)     
- GENETICS OF PHOTOPERIODISM IN GOSSYPIUM HIRSUTUM RACE STOCKS -(Abstract Only)     
- DEVELOPMENT AND MATURITY MEASUREMENTS ON TRANSGENIC BT AND                 ROUNDUP READY COTTON -(Abstract Only)     
- DIFFERENT SOURCES OF ROOT-KNOT NEMATODE RESISTANCE -(Abstract Only)     
- COTTON GOSSYPIUM SPP. PLANT GOSSYPOL CONTENTS OF SELECTED GL2 AND GL3      ALLELES -(Peer Reviewed Journal)     

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