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                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS Species mapped to cattle







Tempheadline bar 1 - Species mapped to cattle
               2 - Banteng
                  3 - Bison
                  4 - Bongo
                  5 - Buffalo, Cape
                  6 - Buffalo, water
                  7 - Bushbuck
                  8 - Caribou
                  9 - Eland
                  10 - Gaur
                  11 - Gemsbok
                  12 - Moose
                  13 - Muskox
                  14 - Nilgai
                  15 - Pronghorn
                  16 - Sheep, bighorn
                  17 - Sheep, domestic
                  18 - Wildebeest
                  19 - Yak
                  20 - Temp   **10-20x WGS of Temp (*Temp temp*)** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Species/breeda
Animal IDb
Public links
Estimatedmapped read coverage
GB>Q20cName

URLName

URLName

URLName, x genomes URLTotalAverageaCitation:doi:bAnimal IDs beginning with "SRR" represent fastq data sets downloaded from NCBI, mapped to ARS-UCD1.2, .bam files moved to AWS, and made accessible here for viewing in IGV.cTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. << Previous

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