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                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS Species mapped to cattle







Bantengheadline bar 1 - Species mapped to cattle
               2 - Banteng
                  3 - Bison
                  4 - Bongo
                  5 - Buffalo, Cape
                  6 - Buffalo, water
                  7 - Bushbuck
                  8 - Caribou
                  9 - Eland
                  10 - Gaur
                  11 - Gemsbok
                  12 - Moose
                  13 - Muskox
                  14 - Nilgai
                  15 - Pronghorn
                  16 - Sheep, bighorn
                  17 - Sheep, domestic
                  18 - Wildebeest
                  19 - Yak
                  20 - Temp   **10-20x WGS of Banteng (*Bos javanicus*)** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Species/breeda
Animal ID
Public links
Estimatedmapped read coverage
GB>Q20bBanteng
SDZ OR206
URL
19x
58.4Banteng
SDZ KB3218
URL
19x
58.3Banteng
TTX 84_B
URL
22x
67.1Banteng
TTX88_B
URL
22x
68.1Banteng
TTX 79_1
URL
18x
53.8Banteng
TTX 90_B
URL
40x
120.6Banteng
TTX 99_B
URL
24x
71.4Banteng
TTX 0807_1
URL
14x
42.5Banteng
TTX 0805_B
URL
21x
62.8Banteng
TTX 97_1
URL
16x
46.6Banteng
TTX 85_B
URL
34x
103.3Banteng
TTX 82_B
URL
20x
60.1Banteng
TTX 86_B1
URL
16x
46.3Banteng, 13 genomes URLTotal

859.3Average

66.1aCitation:doi:bTotal gigabytes of fastq genomic sequence used.  Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. << Previous

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