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                    U.S. DEPARTMENT OF AGRICULTURE
 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS Species mapped to cattle







Sheep, domesticheadline bar 1 - Species mapped to cattle
               2 - Banteng
                  3 - Bison
                  4 - Bongo
                  5 - Buffalo, Cape
                  6 - Buffalo, water
                  7 - Bushbuck
                  8 - Caribou
                  9 - Eland
                  10 - Gaur
                  11 - Gemsbok
                  12 - Moose
                  13 - Muskox
                  14 - Nilgai
                  15 - Pronghorn
                  16 - Sheep, bighorn
                  17 - Sheep, domestic
                  18 - Wildebeest
                  19 - Yak
                  20 - Temp   **10-20x WGS of sheep (*Ovis aries*)** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Species/breeda
Animal IDb
Public links
Estimatedmapped read coverage
GB>Q20cNavajo-Churro
199950927
URL
17.6
52.8Dorper
200011945
URL
21.8
65.3Dorset
200012903
URL
17.4
52.2Finn
200016018
URL
18.4
55.2Katahdin
200008947
URL
18.8
56.5Rambouillet
200035922
URL
17.9
53.7Romanov
199914942
URL
17.8
53.3Suffolk
200117163
URL
18.7
56.1Texel
200006910
URL
18.8
56.5USMARC Comp.
200203048
URL
18.2
54.7Sheep, 10 genomes URLTotal
185.4
556.3Average
18.5
55.6aCitation:  Heaton MP, Smith TPL, Freking BA*et al.*Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity [version 1; peer review: 2 approved].F1000Research2017,6:1303doi: (https://doi.org/10.12688/f1000research.12216.1)bAnimals mapped to ARS-UCD1.2, .bam files moved to AWS, and made accessible here for viewing in IGV.cTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. << Previous

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