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 U.S. Meat Animal Research Center: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center WGS Species mapped to cattle







Bisonheadline bar 1 - Species mapped to cattle
               2 - Banteng
                  3 - Bison
                  4 - Bongo
                  5 - Buffalo, Cape
                  6 - Buffalo, water
                  7 - Bushbuck
                  8 - Caribou
                  9 - Eland
                  10 - Gaur
                  11 - Gemsbok
                  12 - Moose
                  13 - Muskox
                  14 - Nilgai
                  15 - Pronghorn
                  16 - Sheep, bighorn
                  17 - Sheep, domestic
                  18 - Wildebeest
                  19 - Yak
                  20 - Temp   **10-20x WGS of Plains Bison (*Bison bison bison*)** **To view DNA sequence data for an animal or a breed group:** Download and install a desktop version ofIGV **(for example, version 2.12.2)**
In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
***Copy* a URL link address**(right-click) and paste into**IGV:**  **File**> "Load from URL..."
Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)  Species/breeda
Animal ID
Public links
Estimatedmapped read coverage
GB>Q20bBison, Plains
NAGP14568
URLBison, Plains
NAGP5852
URLBison, Plains
709
URLBison, Plains
199912003
URLBison, Plains
199912001
URLBison, 5 genomes URLBeefalo
NAGP5851
URL
35.3
106.0Beefalo
NAGP5854
URL
37.8
113.1Beefalo
NAGP5861
URL
32.2
96.7Beefalo
NAGP5887
URL
42.7
128.0Beefalo
NAGP5895
URL
40.5
121.5Beefalo
NAGP5872
URL
30.0
90.0Beefalo
NAGP5874
URL
34.5
103.5Beefalo, 7 genomesURL
759.6Bison-Beefalo, 12 genomesURLBrahman
19919842
URL
19.6
79.7Indu Brazil
19361502
URL
11.8
47.8Nelore
19350205
URL
20.4
68.0Indicus, 3 genomes URL


195.7Bison, Beefalo, Indicus, 20 genome URLTotalAverageaCitation:  Oppenheimer et al. A Reference Genome Assembly of American Bison, Bison bison bison, Journal of Heredity, 112:174–183.doi: https://doi.org/10.1093/jhered/esab003bTotal gigabases of genomic sequence with a quality score greater than or equal to 20.  Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. << Previous

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