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                    U.S. DEPARTMENT OF AGRICULTURE
 Dale Bumpers National Rice Research Center: Stuttgart, AR
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ARS Home Southeast Area Stuttgart, Arkansas Dale Bumpers National Rice Research Center People & Locations







Jeremy  Edwards
                        Dale Bumpers National Rice Research Center

                        




                        
                        Research Geneticist (Plants)
                        Phone: (870) 672-6109
                        
                        
                        Fax: (870) 673-7581(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsBroadening and Strengthening the Genetic Base of Rice for Adaptation to a Changing Climate, Crop Production Systems, and Markets
                                                    In-House Appropriated
                                                                    (D)Accession Number: 445546Mechanisms of Cold Stress Tolerance Responses in Rice
                                                    Reimbursable Cooperative Agreement
                                                                    (R)Accession Number: 443981Assessment of Rice Production Under Selected Abiotic and Biotic Stress Environments
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 444580**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Discovery and validation of above ground biomass enhancing alleles from a diverse USDA-ARS Aus panel of rice (Oryza sativa L.)

- (Abstract Only)Mitchell, J.R., Ponniah, S.K., Rohila, J.S., Sookaserm, T.B., Jackson, A.K., Edwards, J., McClung, A., Huggins, T.D. 2024. Discovery and validation of above ground biomass enhancing alleles from a diverse USDA-ARS Aus panel of rice (Oryza sativa L.). Meeting Abstract. Association of 1890 Research Directors, Inc. Nashville, Tennessee, April 6-9, 2024.USDA-ARS and UAPB collaborative research project: Boosting drought stress tolerance in US rice through cutting-edge genomic approach

- (Abstract Only)Mitchell, J., Rohila, J.S., Edwards, J., Sookaserm, T.B., Jackson, A.K., Huggins, T.D., Ponniah, S.K. 2024. USDA-ARS and UAPB collaborative research project: Boosting drought stress tolerance in US rice through cutting-edge genomic approach. Meeting Abstract. 65th Annual Rural Life Conference, University of Arkansas at Pine Bluff, Pine Bluff, Arkansas.  March 15, 2024. p 26-27.Navigating rice seedling cold resilience: QTL mapping in two inbred line populations and the search for genes
                                                        

- (Peer Reviewed Journal)Schlappi, M.R., Jessel, A.R., Jackson, A.K., Phan, H., Jia, M.H., Edwards, J., Eizenga, G.C. 2023. Navigating rice seedling cold resilience: QTL mapping in two inbred line populations and the search for genes. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2023.1303651.Substitution mapping yield-related traits using chromosome segment substitution lines derived from three ancestral donors in the background of elite Indica and Japonica rice

- (Abstract Only)Eizenga, G.C., Edwards, J., Jackson, A.K., Huggins, T.D. 2023. Substitution mapping yield-related traits using chromosome segment substitution lines derived from three ancestral donors in the background of elite Indica and Japonica rice. Meeting Abstract. ASA-CSSA-SSSA International Annual Meeting, Oct 28-Nov 2, 2023, St. Louis, Missouri.Yield component QTLs identified by genome-wide association mapping validated in a diverse tropical japonica × tropical japonica rice biparental mapping population
                                                        

- (Peer Reviewed Journal)Eizenga, G.C., Rice, A., Huggins, T.D., Shakiba, E., Edwards, J., Jackson, A.K., Jia, M.H., Ali, L. 2023. Yield component QTLs identified by genome-wide association mapping validated in a diverse tropical japonica × tropical japonica rice biparental mapping population. Crop Science. https://doi.org/10.1002/csc2.20999.Genetic loci regulating the concentrations of anthocyanins and proanthocyanidins in the pericarps of purple and red rice
                                                        

- (Peer Reviewed Journal)Chen, M., Pinson, S.R., Jackson, A.K., Edwards, J. 2023. Genetic loci regulating the concentrations of anthocyanins and proanthocyanidins in the pericarps of purple and red rice. The Plant Genome. https://doi.org/10.1002/tpg2.20338.Discovery of genes that regulate the concentrations of anthocyanin and proanthocyanidin antioxidants in purple and red rice varieties

- (Proceedings)Pinson, S.R., Chen, M., Grunden, E., Everette, J.D., Jackson, A.K., Edwards, J. 2024. Discovery of genes that regulate the concentrations of anthocyanin and proanthocyanidin antioxidants in purple and red rice varieties [abstract]. Proceedings of 39th Rice Technical Working Group, Hot Springs, Arkansas, February 20-23, 2023. p. 63-64.QTL mapping and genomic prediction of disease reactions of rice to the rice blast fungus M. oryzae races

- (Abstract Only)Genotyping accessions in the National Small Grains rice collection to enable curation and identification of accessions with traits useful for U.S. rice breeders

- (Proceedings)Huggins, T.D., Edwards, J., McClung, A.M., Jia, M.H. 2024. Genotyping accessions in the National Small Grains rice collection to enable curation and identification of accessions with traits useful for U.S. rice breeders [abstract]. Proceedings of 39th Rice Technical Working Group meeting, Hot Springs, Arkansas, February 20-23, 2023. p. 62.Development and exploration of a global tropical japonica diversity panel

- (Abstract Only)Characterizing variation in rice agronomic performance with multi-temporal UAV imagery and manifold learning

- (Abstract Only)Genomic dissection of tropical japonica x indica rice population for responses to variation in growing temperatures

- (Proceedings)Rohila, J.S., Huggins, T.D., McClung, A.M., Edwards, J. 2024. Genomic dissection of tropical japonica x indica rice population for responses to variation in growing temperatures. Rice Technical Working Group Meeting Proceedings. February 20-23, 2024, Hot Springs, Arkansas.  Electronic Publication. p. 60.USDA-ARS Aus Rice Panel: An untapped resource to enrich natural genetic variation for abiotic stress tolerance in US rice breeding programs

- (Proceedings)Rohila, J.S., Sookaserm, T.B., Mitchell, J., Jackson, A.K., Edwards, J., McClung, A.M., Huggins, T.D., Ponniah, S. 2024. USDA-ARS Aus Rice Panel: An untapped resource to enrich natural genetic variation for abiotic stress tolerance in US rice breeding programs. Rice Technical Working Group Meeting Proceedings. February 20-23, 2023, Hot Springs, Arkansas.  Electronic Publication. p. 81.Insights from the phenotypic and genotypic characterization of accessions belonging to the Oryza rufipogon Species Complex (ORSC)

- (Proceedings)Eizenga, G.C., Kim, H., Jung, J., Greenberg, A.J., Edwards, J., Naredo, E.B., Banaticla-Hilario, C.N., Harrington, S.E., Shi, Y., McClung, A.M., McNally, K.L., McCouch, S.R. 2024. Insights from the phenotypic and genotypic characterization of accessions belonging to the Oryza rufipogon Species Complex (ORSC). Proceedings of 39th Rice Technical Working Group meeting, Hot Springs, Arkansas, Feb 20-23, 2023. p. 61-62.Discerning the influence of admixture on the genotypic and phenotypic characterization of the Oryza rufipogon species complex (ORSC)

- (Abstract Only)Eizenga, G.C., Kim, H., Jung, J., Greenberg, A.J., Edwards, J., Naredo, E.B., Banaticla-Hilario, C.N., Harrington, S.E., Shi, Y., McNally, K.L., McCouch, S.R. 2023. Discerning the influence of admixture on the genotypic and phenotypic characterization of the Oryza rufipogon species complex (ORSC). Plant and Animal Genome 30 Conference, San Diego, California.  January 13-18, 2023.Validation of yield component QTLs identified by Genome-Wide Association Mapping in a tropical japonica × tropical japonica Rice Biparental Mapping Population

- (Abstract Only)Eizenga, G.C., Rice, A.D., Huggins, T.D., Shakiba, E., Edwards, J., Jackson, A.K., Jia, M.H., Ali, L. 2022. Validation of yield component QTLs identified by Genome-Wide Association Mapping in a tropical japonica × tropical japonica Rice Biparental Mapping Population. ASA, CSSA, SSSA International Meeting, Baltimore, Maryland.  November 6-9, 2022.Use of spectral imaging to predict agronomic performance in research and commercial rice fields

- (Abstract Only)McClung, A.M., Hashem, A., Bellis, E., Huggins, T.D., Faraq, F., Reba, M.L., Edwards, J. 2022. Use of spectral imaging to predict agronomic performance in research and commercial rice fields. Meeting Abstract. ASA-CSSA-SSSA International Annual Meeting, Baltimore, Maryland.Identification of QTLs associated with tillering and root biomass that are robust across different developmental stages and environments in rice
                                                        

- (Peer Reviewed Journal)Barnaby, J.Y., McClung, A.M., Edwards, J., Jackson, A.K., Pinson, S.R. 2022. Identification of QTLs associated with tillering and root biomass that are robust across different developmental stages and environments in rice. Scientific Reports. https://doi.org/10.1038/s41598-022-17109-y.Assessment of rice sheath blight resistance including associations with plant architecture, as revealed by genome-wide association studies
                                                        

- (Peer Reviewed Journal)Li, D., Zhang, F., Pinson, S.R., Edwards, J., Jackson, A.K., Xia, X., Eizenga, G.C. 2022. Assessment of rice sheath blight resistance including associations with plant architecture, as revealed by genome-wide association studies. Rice. https://doi.org/10.1186/s12284-022-00574-4.Phenotypic variation and the impact of admixture in the Oryza rufipogon Species Complex (ORSC)
                                                        

- (Peer Reviewed Journal)Eizenga, G.C., Kim, H., Jung, J., Greenberg, A.J., Edwards, J., Naredo, E.B., Banaticla-Hilario, C.N., Harrington, S.E., Shi, Y., Kimball, J.A., Harper, L.A., Mcnally, K.L., McCouch, S.R. 2022. Phenotypic variation and the impact of admixture in the Oryza rufipogon Species Complex (ORSC). Frontiers in Plant Science. https://doi.org/10.3389/fpls.2022.787703.Breedbase: a digital ecosystem for modern plant breeding
                                                        

- (Peer Reviewed Journal)Morales, N., Ogbonna, A.C., Ellerbrock, B.J., Bauchet, G.J., Tantikanjana, T., Tecle, I.Y., Powell, A.F., Lyon, D., Naama, M., Simoes, C.C., Saha, S., Hosmani, P., Flores, M., Panitz, N., Preble, R.S., Agbona, A., Rabbi, I., Kulakow, P., Peteti, P., Kawuki, R., Esuma, W., Kanaabi, M., Chelagant, D.M., Uba, E., Olojede, A., Onyeka, J., Shah, T., Karanja, M., Egesi, C., Tufan, H., Paterne, A., Asfaw, A., Jannink, J., Wolfe, M., Birkett, C.L., Hershberger, J.M., Gore, M.A., Robbins, K.R., Rife, T., Chaney, C., Poland, J., Arnaud, E., Laporte, M., Waring, D.J., Brown, A., Bayo, S., Uwimana, B., Akech, V., Yencho, C., De Boeck, B., Campos, H., Swennen, R., Edwards, J., Mueller, L.A., Kulembeka, H., Salum, K., Mrema, E. 2022. Breedbase: a digital ecosystem for modern plant breeding. G3, Genes/Genomes/Genetics. https://doi.org/10.1093/g3journal/jkac078.Exploring relationships between phenotypic groups and genotypic subpopulations in ancestral rice, the Oryza rufipogon Species Complex (ORSC)

- (Abstract Only)Eizenga, G.C., Kim, H., Jung, J., McNally, K.L., Greenberg, A.J., Edwards, J., Naredo, E.B., Banaticla-Hilario, C.N., Harrington, S.E., Shi, Y., Kimball, J.A., Harper, L.A., McCouch, S.R. 2022. Exploring relationships between phenotypic groups and genotypic subpopulations in ancestral rice, the Oryza rufipogon Species Complex (ORSC). Abstract. Plant and Animal Genome Conference. San Diego, California. January 8-12, 2022.Relationships among arsenic-related traits, including grain arsenic concentration and rice straighthead resistance, as revealed by genome-wide association
                                                        

- (Peer Reviewed Journal)Pinson, S.R., Heuschele, D.J., Edwards, J., Jackson, A.K., Sharma, S., Barnaby, J.Y. 2022. Relationships among arsenic-related traits, including grain arsenic concentration and rice straighthead resistance, as revealed by genome-wide association. Frontiers in Genetics. https://doi.org/10.3389/fgene.2021.787767.Modeling phenotypic groups reflects genetic relationships between cultivars and their wild relatives in rice

- (Abstract Only)Greenberg, A.J., Edwards, J., McNally, K.L., Jung, J., Kim, H., Naredo, E.B., Banaticla-Hilario, C.N., Eizenga, G.C., McCouch, S.R. 2021. Modeling phenotypic groups reflects genetic relationships between cultivars and their wild relatives in rice. Abstract. ASA,CSSA,SSSA International Annual Meeting.  Salt Lake City, Utah.Evaluation of seedling cold stress in the Krasnodarskij 3352 x Carolino 164 Recombinant Inbred Line population

- (Abstract Only)Eizenga, G.C., Shimoyama, N.S., Jia, M.H., Jackson, A.K., Edwards, J., Jessel, A.D., Schlappi, M.R. 2021. Evaluation of seedling cold stress in the Krasnodarskij 3352 x Carolino 164 Recombinant Inbred Line population. Abstract.  ASA,CSSA,SSSA International Annual Meeting, Salt Lake City, Utah.Unraveling the relationship between phenotype based classification of the oryza rufipogon species complex and genotypic subpopulations

- (Abstract Only)Eizenga, G.C., Kim,H., Jung, J., McNally, K.L., Greenberg, A.J., Edwards, J., Naredo, E.B., Banaticla-Hilario, C.N., Harrington, S.E., Shi, Y., Kimball, J.A., Harper, L.A., McCouch, S.R. 2021. Unraveling the relationship between phenotype based classification of the oryza rufipogon species complex and genotypic subpopulations. Abstract.  ASA,CSSA,SSSA International Annual Meeting.  Salt Lake City, Utah.Rice yield prediction using unmanned aircraft systems

- (Abstract Only)Hashem, A.A., Morris, M., McClung, A.M., Huggins, T.D., Faraq, F., Reba, M.L., Bellis, E.S., Edwards, J. 2022. Rice yield prediction using unmanned aircraft systems. Abstract. 25th National Conservation Systems Cotton and Rice Conference, January 31 - February 2, 2022.  Jonesboro, Arkansas.Identification of QTL affecting inorganic arsenic levels in rice grain

- (Abstract Only)Barnaby, J.Y., Fernandez-Baca, C., McClung, A.M., Edwards, J. 2021. Identification of QTL affecting inorganic arsenic levels in rice grain. ASA-CSSA-SSSA Proceedings. Salt Lake City, Utah, November 7-10, 2021.Exploring adaptation to changing environments (E) and mitigation strategies through genetics (G) and management (M) for crop improvement

- (Abstract Only)Barnaby, J.Y., Fernandez-Baca, C.P., McClung, A.M., Edwards, J., Huggins, T.D., Rivers, A.R., Fleisher, D.H. 2021. Exploring adaptation to changing environments (E) and mitigation strategies through genetics (G) and management (M) for crop improvement. Korean Women in Science Symposium. https://www.kwise.org/blog/kwse-kwise-joint-web-seminar/Prototype for developing SNP markers from GWAS and biparental QTL for rice panicle and grain traits
                                                        

- (Peer Reviewed Journal)Eizenga, G.C., Jackson, A.K., Edwards, J. 2021. Prototype for developing SNP markers from GWAS and biparental QTL for rice panicle and grain traits. Agricultural and Environmental Letters. https://doi.org/10.1002/ael2.20047.Genomic prediction and QTL mapping of root system architecture and above-ground agronomic traits in rice (Oryza sativa L.) with a multi-trait index and Bayesian networks
                                                        

- (Peer Reviewed Journal)Sharma, S., Pinson, S.R., Gealy, D.R., Edwards, J. 2021. Genomic prediction and QTL mapping of root system architecture and above-ground agronomic traits in rice (Oryza sativa L.) with a multi-trait index and Bayesian networks. G3, Genes/Genomes/Genetics. https://doi.org/10.1093/g3journal/jkab178.Gene disruption by structural mutations drives selection in US rice breeding over the last century
                                                        

- (Peer Reviewed Journal)Vaughn, J.N., Korani, W., Stein, J.C., Edwards, J., Peterson, D.G., Simpson, S.A., Youngblood, R.C., Grimwood, J., Ware, D., Mcclung, A.M., Scheffler, B.E. 2021. Gene disruption by structural mutations drives selection in US rice breeding over the last century. PLoS Genetics. 17(3): e1009389. https://doi.org/10.1371/journal.pgen.1009389.Grain inorganic arsenic content in rice managed through targeted introgressions and irrigation management
                                                        

- (Peer Reviewed Journal)Fernandez-Baca, C.P., McClung, A.M., Edwards, J., Codling, E.E., Reddy, V., Barnaby, J.Y. 2021. Grain inorganic arsenic content in rice managed through targeted introgressions and irrigation management. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2020.612054.Enhancing the searchability, breeding utility and efficient management of germplasm accessions in the USDA-ARS rice collection
                                                        

- (Peer Reviewed Journal)McClung, A.M., Edwards, J., Jia, M.H., Huggins, T.D., Bockelman, H.E., Ali, L., Eizenga, G.C. 2020. Enhancing the searchability, breeding utility and efficient management of germplasm accessions in the USDA-ARS rice collection. Crop Science. https://doi.org/10.1002/csc2.20256.Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice.
                                                        

- (Peer Reviewed Journal)Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2020. Vis/NIR hyperspectral imaging distinguishes sub-population, production environment, and physicochemical properties in rice. Scientific Reports. https://doi.org/10.1038/s41598-020-65999-7.Efficient accession management and characterization of the USDA-ARS rice germplasm collection through phenotyping and genotyping

- (Abstract Only)Huggins, T.D., McClung, A.M., Edwards, J., Jia, M.H., Bockelman, H.E., Ali, M.L., Eizenga, G.C. 2020. Efficient accession management and characterization of the USDA-ARS rice germplasm collection through phenotyping and genotyping. Meeting Abstract.Genomic prediction and bayesian network analysis of multiple root architecture traits in rice

- (Abstract Only)Sharma, S., Gealy, D.R., Pinson, S.R., Edwards, J. 2020. Genomic prediction and bayesian network analysis of multiple root architecture traits in rice. Poster presentation.  Arkansas Bioinformatics Consortium, Little Rock, Arkansas.  February 10-11, 2020.Ricebase: A BreedBase implementation for rice with tools for gene discovery and marker development.

- (Abstract Only)Edwards, J. 2020. Ricebase: A BreedBase implementation for rice with tools for gene discovery and marker development. International Plant and Animal Genome Conference, San Diego, California, January 11-15, 2020. Abstract W155. Electronic Publication.SNP markers for panicle architecture and grain traits based on RDP1 GWA-QTL and available for japonica rice improvement

- (Abstract Only)Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2019. SNP markers for panicle architecture and grain traits based on RDP1 GWA-QTL and available for japonica rice improvement. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.SNP markers for panicle architecture and grain traits developed from GWA-QTL and available for japonica rice improvement

- (Abstract Only)Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2019. SNP markers for panicle architecture and grain traits developed from GWA-QTL and available for japonica rice improvement. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.Ricebase update: comparative GWAS annotation for gene discovery and marker development.

- (Proceedings)Edwards, J., Jackson, A.K., Jia, M.H., Eizenga, G.C. 2021. Ricebase update: comparative GWAS annotation for gene discovery and marker development. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 79. Electronic Publication.Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses

- (Proceedings)Pinson, S.R., Edwards, J., Jackson, A.K., Heuschele, D.J., Barnaby, J.Y., Tarpley, L., Green, C.E., Codling, E.E., Smith, A.P. 2021. Genetic loci and agronomic traits impacting grain-arsenic concentrations revealed by GWA and biparental QTL analyses. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. Pp 89-90. Electronic Publication.Prospective genomic regions with superior alleles for seedling stage salt tolerance identified via GWAS in the USDA rice mini-core collection

- (Proceedings)Rohila, J.S., Edwards, J., Tran, G.D., Jackson, A.K., McClung, A.M. 2021. Prospective genomic regions with superior alleles for seedling stage salt tolerance identified via GWAS in the USDA rice mini-core collection. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 80. Electronic Publication.QTL mapping and genomic prediction of seedling root architectural traits in a rice RIL population.

- (Proceedings)Sharma, S., Edwards, J., Gealy, D.R., Pinson, S.R. 2021. QTL mapping and genomic prediction of seedling root architectural traits in a rice RIL population. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 83-84. Electronic Publication.Curating the USDA-ARS rice germplasm collection: efficient accession management and characterization through phenotyping and genotyping

- (Proceedings)Huggins, T.D., McClung, A.M., Edwards, J., Jia, M.H., Bockelman, H.E., Ali, L.M., Eizenga, G.C. 2021. Curating the USDA-ARS rice germplasm collection: efficient accession management and characterization through phenotyping and genotyping. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 76. Electronic Publication.GWA mapping of cold tolerance traits at the seedling stage and validation in two rice biparental mapping populations

- (Proceedings)Eizenga, G.C., Shimoyama, N.S., Jackson, A.K., Edwards, J., Jessel, A.R., Schlappi, M.R. 2021. GWA mapping of cold tolerance traits at the seedling stage and validation in two rice biparental mapping populations. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 81-82. Electronic Publication.Gene disruption by structural mutations drives selection in U.S. rice breeding over the last century

- (Proceedings)Vaughn, J.N., Stein, J.C., Korani, W., Edwards, J., Peterson, D.G., Simpson, S.A., Grimwood, J., Ware, D., McClung, A.M., Scheffler, B.E. 2021. Gene disruption by structural mutations drives selection in U.S. rice breeding over the last century. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 77. Electronic Publication.Identification of GWA-QTLs and germplasm useful for enhancing sheath blight resistance

- (Proceedings)Eizenga, G.C., Pinson, S.R., Li, D., Zhang, F., Edwards, J., Jackson, A.K. 2021. Identification of GWA-QTLs and germplasm useful for enhancing sheath blight resistance. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p. 114-115. Electronic Publication.Differentiating sub-population, production environment and grain chalk by hyperspectral imaging

- (Proceedings)Barnaby, J.Y., Huggins, T.D., Lee, H., McClung, A.M., Pinson, S.R., Oh, M., Bauchan, G.R., Tarpley, L., Lee, K., Kim, M.S., Edwards, J. 2021. Differentiating sub-population, production environment and grain chalk by hyperspectral imaging. Proceedings of 38th Rice Technical Working Group Meeting, February 24-27, 2020, Orange Beach, Alabama. p 177. Electronic Publication.Rice seedling cold stress QTL revealed by genome-wide association mapping and biparental mapping

- (Abstract Only)Eizenga, G.C., Shimoyama, N.S., Jackson, A.K., Edwards, J., Jessel, A.R., Schlappi, M.R. 2019. Rice seedling cold stress QTL revealed by genome-wide association mapping and biparental mapping. Abstract, Plant and Animal Genome Conference XXVIII, San Diego, California, January 11-15, 2020.Phylogenetic origin and dispersal pattern of Taiwan weedy rice.
                                                        

- (Peer Reviewed Journal)Wu, D., Gealy, D.R., Jia, M.H., Edwards, J., Lai, M., McClung, A.M. 2019. Phylogenetic origin and dispersal pattern of Taiwan weedy rice. Pest Management Science. https://doi.org/10.1002/ps.5683.Identification of superior alleles for seedling stage salt tolerance in the USDA rice mini-core collection
                                                        

- (Peer Reviewed Journal)Rohila, J.S., Edwards, J., Tran, G.D., Jackson, A.K., McClung, A.M. 2019. Identification of superior alleles for seedling stage salt tolerance in the USDA rice mini-core collection. Plants. https://doi.org/10.3390/plants8110472.The genetic basis of cold stress tolerance in rice at the seedling stage identified in two independent high resolution genome-wide association mapping studies

- (Abstract Only)Eizenga, G.C., Shimoyama, N., Jackson, A.K., Edwards, J., Schlappi, M.R. 2019. The genetic basis of cold stress tolerance in rice at the seedling stage identified in two independent high resolution genome-wide association mapping studies. Abstract, ASA-CSSA-SSSA Annual Meeting, San Antonio, Texas, November 10-13, 2019.Registration of the ‘Estrela/NSFTV199’ Rice Recombinant Inbred Line Mapping Population

- (Peer Reviewed Journal)Eizenga, G.C., Chen, M., Jia, M.H., Jackson, A.K., Edwards, J. 2019. Registration of the ‘Estrela/NSFTV199’ Rice Recombinant Inbred Line Mapping Population. Journal of Plant Registrations. 13:469-478.BrAPI - An application programming interface for plant breeding applications
                                                        

- (Peer Reviewed Journal)Abbeloos, R., Bauchet, G., Benites-Alfaro, O., Birkett, C.L., Carceller, P., Costa, B.V., Edwards, J., Finkers, R., Guignon, V., Hok, P., Kilian, A., Laporte, M., Lebauer, D., Lyon, D., Marshall, D., Matthews, D.E., Milne, I., Morales, N., Mueller, L., Papoutsoglou, E., Pearce, B., Perez-Masias, I., Ramirez-Gonzalez, R.H., Rauback, S., Rife, T., Robbins, K., Rouard, M., Selby, P., Sempere, G., Shaw, P., Gordon, S., Uszynski, G., Verouden, M., Backlund, J.E., Salido, M.B., Cornut, G., Gao, S.Y., Patrick, K., Lagare, J.E., Lange, M., Larmande, P., Neveu, P., Prommier, C., Tahore, A., Sarma, C., Scholz, U., Mistry, N., Simon, R., Soldevilla, N., Tovar, C. 2019. BrAPI - An application programming interface for plant breeding applications. Bioinformatics. https://doi.org/10.1093/bioinformatics/btz190.Functional characterization of a new class of rice blast resistance gene Ptr

- (Abstract Only)Jia, Y., Zhao, H., Wang, X., Minkenberg, B., Wheatley, M., Fan, J., Jia, M.H., Famoso, A., Edwards, J., Wamishe, Y., Valent, B., Want, G., Yang, Y. 2019. Functional characterization of a new class of rice blast resistance gene Ptr. Plant and Animal Genome Conference.Genes and physiological factors associated with natural variation in rice arsenic concentrations

- (Abstract Only)Pinson, S.R., Edwards, J., Heuschele, J.D., Tarpley, L., Green, C.E., Smith, A.P. 2018. Genes and physiological factors associated with natural variation in rice arsenic concentrations. Meeting Abstract. Available: http://ricecongress2018.irri.org/sites/default/files/Genes%20and%20Physiological%20Factors%20Associated%20With%20Natural%20Variation%20in%20Rice%20Arsenic%20Concentrations.pdfIdentification of genetic diversity in the USDA-minicore and among selected Vietnamese rice accessions for seedling stage salt tolerance

- (Abstract Only)Rohila, J.S., Edwards, J., Gioi, T.D., McClung, A.M. 2018. Identification of genetic diversity in the USDA-minicore and among selected Vietnamese rice accessions for seedling stage salt tolerance. Meeting Abstract. 5th International Rice Congress, October 14-17, 2018, Marina Bay Sands, Singapore.Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population
                                                        

- (Peer Reviewed Journal)Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Liakat, A.M., Shakiba, E., Tran, N.T., McCouch, S.R., Edwards, J. 2018. Validation of yield component traits identified by GWA mapping in a tropical japonica x tropical japonica rice mapping population. The Plant Genome. https://doi.org/10.3835/plantgenome2018.04.0021.Identifying panicle architecture traits for rice improvement: a treasure hunt from genome-wide association studies to QTL validation, marker development and germplasm release

- (Abstract Only)Eizenga, G.C., Jackson, A.K., Jia, M.H., Edwards, J., McClung, A.M. 2018. Identifying panicle architecture traits for rice improvement: a treasure hunt from genome-wide association studies to QTL validation, marker development and germplasm release. Available: http://ricecongress2018.irri.org/conference-program.The rice blast resistance gene Ptr encodes an atypical protein required for broad spectrum disease resistance
                                                        

- (Peer Reviewed Journal)Zhao, H., Wang, X., Jia, Y., Minkenberg, B., Wheatley, M., Fan, J., Jia, M.H., Famoso, A., Edwards, J., Wamishe, Y., Valent, B., Wang, G., Yang, Y. 2018. The rice blast resistance gene Ptr encodes an atypical protein required for broad spectrum disease resistance. Nature Communications. https://doi.org:10.1038/s41467-018-04369-4.Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits
                                                        

- (Peer Reviewed Journal)Huggins, T.D., Chen, M., Fjellstrom, R.G., Jackson, A.K., McClung, A.M., Edwards, J. 2018. Association analysis of three diverse rice (Oryza sativa L.) germplasm collections for loci regulating grain quality traits. The Plant Genome. https://doi:10.3835/plantgenome2017.09.0085.Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections

- (Proceedings)Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis and marker development for grain quality traits using USDA diverse rice germplasm collections. Rice Technical Working Group Meeting Proceedings, February 19-22, 2018, San Diego, California.  Electronic PublicationDeveloping molecular markers for use in marker-assisted selection from rice genome-wide association studies

- (Proceedings)Eizenga, G.C., Edwards, J., Jackson, A.K., Jia, M.H., Boykin, D.L. 2018. Developing molecular markers for use in marker-assisted selection from rice genome-wide association studies. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 71-72.A Reference Genome for US Rice

- (Abstract Only)Scheffler, B.E., Edwards, J., Stein, J., Ware, D., Vaughn, J.N., Schmutz, J., Peterson, D., Youngblood, C., Duke, M.V., Grimwood, J., Simpson, S.A., Mcclung, A.M. 2018. A Reference Genome for US Rice. Meeting Abstract. 37th Rice Technical Working Group.p.50.Genetic and physiological relationships between grain arsenic and resistance to straighthead

- (Proceedings)Pinson, S.R., Edwards, J., Hueschele, D.J., Tarpley, L., Isbell, C., Green, C.E., Smith, A.P. 2018. Genetic and physiological relationships between grain arsenic and resistance to straighthead. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.Rice diversity panels available through the genetic stocks oryza collection

- (Proceedings)McClung, A.M., Bernhardt, L., Edwards, J., Eizenga, G.C. 2018. Rice diversity panels available through the genetic stocks oryza collection. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. p. 80.Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection

- (Proceedings)McClung, A.M., Bockelman, H.E., Jia, M.H., Edwards, J. 2018. Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection. Proceedings of 37th Rice Technical Working Group Meeting, February 19-22, 2018, Long Beach, California. p 79. Electronic Publication.Dissection of genetic architecture of grain chalk using NIR spectroscopy

- (Proceedings)Barnaby, J.Y., Huggins, T.D., Lee, H., Oh, M., McClung, A.M., Pinson, S.R., Tarpley, L., Kim, M.S., Edwards, J. 2018. Dissection of genetic architecture of grain chalk using NIR spectroscopy. Rice Technical Working Group Meeting Proceedings. February 19-22, 2018, San Diego, California. Electronic Publication.Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection

- (Abstract Only)Huggins, T.D., Edwards, J., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis for loci regulating grain quality traits and marker development in the USDA rice collection. Meeting Abstract. Phenome 2018 Conference, Tucson Arizona. Poster Number 46.Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits

- (Abstract Only)Edwards, J., Huggins, T.D., Chen, M., Jackson, A.K., McClung, A.M. 2018. Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits. Plant and Animal Genome Conference XXVI Proceedings. P0913.Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population
                                                        

- (Peer Reviewed Journal)Eizenga, G.C., Sanchez, P., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for domestication related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Molecular Breeding. https://doi.org:10.1007/s11032-017-0734-5.GENOME WIDE ASSOCIATION STUDY DISSECTING GENETIC ARCHITECTURE OF GRAIN PHYSICOCHEMICAL TRAITS IN RICE

- (Abstract Only)Barnaby, J.Y., Huggins, T.D., McClung, A.M., Pinson, S.R., Edwards, J., Tarpley, L., Kim, M.S., Lee, H., Oh, M. 2017. Genome wide association study dissecting genetic architecture of grain physicochemical traits in rice. 34th Annual Mid Atlantic Plant Molecular Biology Society Conference . p.15. Program Booklet. http://wp.towson.edu/mapmbs/files/2017/08/34th-MAPMBS-program-2017-26ysoam.pdfValidation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population

- (Abstract Only)Eizenga, G.C., Jia, M.H., Jackson, A.K., Boykin, D.L., Ali, L.M., Shakiba, E., McCouch, S.R., Edwards, J.D. 2017. Validation of yield component traits identified by GWA mapping in a rice tropical japonica x tropical japonica RIL mapping population. Crop Science Society of America. https://scisoc.confex.com/scisoc/2017am/webprogram/Paper106518.html.Phenotypic Evaluation of Weed-competitive Traits and Yield of Rice RILs from an Indica x Tropical Japonica Mapping Population

- (Abstract Only)Gealy, D.R., Pinson, S.R., Edwards, J. 2018. Phenotypic evaluation of weed-competitive traits and yield of rice RILs from an Indica x Tropical Japonica mapping population. Proceedings, 8th World Congress of Alleopathy, July 24-28, Marseille, France pg 39.Genetic Architecture of Cold Tolerance in Rice (Oryza sativa) Determined through High Resolution Genome-Wide Analysis

- (Peer Reviewed Journal)Shakiba, E., Edwards, J., Jodari, F., Duke, S.E., Baldo, A.M., Korniliev, P., Mccouch, S.R., Eizenga, G.C. 2017. Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. PLoS One. doi:10.1371/journalpone.0172133.Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.)

- (Peer Reviewed Journal)Sater, H.M., Pinson, S.R.M., Moldenhauer, K., Siebenmorgen, T.J., Mason, R.E., Boyett, V.A., Edwards, J. 2017. Fine mapping and introgressing qFIS1-2, a major QTL for kernel fissure resistance in rice (Oryza sativa L.). Crop Science. doi:10.2135/cropsci2016.09.08213.Genetic Architecture of Grain Chalk in Rice and Interactions with a Low Phytic Acid Locus

- (Peer Reviewed Journal)Edwards, J., Jackson, A.K., Bryant, R.J., McClung, A.M. 2017. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Field Crops Research. doi:10.1016/jc.fcr.2017.01.015.Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population

- (Abstract Only)Eizenga, G.C., Sanchez, P.L., Jackson, A.K., Edwards, J., Hurwitz, B.L., Wing, R.A., Kudrna, D. 2017. Genetic variation for traits associated with domestication identified in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) x ancestral rice, O. nivara, mapping population. Meeting Abstract. https://pag.confex.com/pag/xxv/meetingapp.cgi/Paper/24453.Agronomic and physiological performance of Teqing x Lemont introgression rice (Oryza sativa L.) lines under limited irrigation system

- (Abstract Only)Rohila, J.S., Edwards, J., Zhao, H., McClung, A.M. 2017. Agronomic and physiological performance of Teqing x Lemont introgression rice (Oryza sativa L.) lines under limited irrigation system. Meeting Abstract. Proc.InterDrought-V Abstracts. p. 142.Ricebase - a resource for rice breeding

- (Abstract Only)Edwards, J. 2017. Ricebase - a resource for rice breeding. Plant and Animal Genome. doi:10.106/j.fcr.2017.01.015.Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data

- (Peer Reviewed Journal)Edwards, J., Baldo, A.M., Mueller, L.A. 2016. Ricebase: a breeding and genetics platform for rice, integrating individual molecular markers, pedigrees, and whole-genome-based data. Database: The Journal of Biological Databases and Curation. 2016:baw107.Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines

- (Peer Reviewed Journal)Eizenga, G.C., Edwards, J., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components measured throughout the growth cycle of Jefferson rice (Oryza sativa) x O. rufipogon introgression lines. Crop Science 56:1-12.  DOI: 10.2135/cropsci2015.10.0603.Dissecting cold tolerance in rice as revealed by association mapping

- (Proceedings)Shakiba, E., Jodari, F., Edwards, J., Baldo, A.M., Duke, S.E., Korniliev, P., McCouch, S.R., Eizenga, G.C. 2017. Dissecting cold tolerance in rice as revealed by association mapping. Proc. 36th Rice Technical Working Group Meeting Proceedings. pp. 64-65.  1-4 March 2016.  CDROM.Assessing foliar ascorbate content in the rice diversity panel 1

- (Proceedings)Castillo-Gonzalez, S.E., Tibbs, M., Wilkie, A., Yeater, K.M., Edwards, J., McClung, A.M., Eizenga, G.C., Mccouch, S.R., Lorence, A. 2017. Assessing foliar ascorbate content in the rice diversity panel 1. Proc. 36th Rice Technical Working Group Meeting, Galveston, TX, p. 77.  March 1-4, 2016. CDROM.Free and open source tools for high throughput rice phenotyping and data storage

- (Proceedings)Edwards, J. 2017. Free and open source tools for high throughput rice phenotyping and data storage. Rice Technical Working Group Meeting Proceedings. March 1-4, 2016, Galveston, Texas.  CDROM.Genetic and environmental effects in the TeQing-into-Lemont (TIL) population under flooded and alternating wet-dry conditions

- (Proceedings)Edwards, J., Teaster, N.D., Scheffler, B.E., McClung, A.M. 2017. Genetic and environmental effects in the TeQing-into-Lemont (TIL) population under flooded and alternating wet-dry conditions. Proc. 36th Rice Technical Working Group Meeting, Galveston, TX, p. 69-70. March 1-4, 2016. CDROM.Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines

- (Abstract Only)Edwards, J., Eizenga, G.C., Yeater, K.M., McCouch, S.R., McClung, A.M. 2016. Transgressive variation for yield components and dynamic traits in Jefferson (Oryza sativa) x O. rufipogon introgression lines. Plant and Animal Genome Conference Proceedings. W012.Unlocking the variation hidden in rice germplasm collections with genomics

- (Abstract Only)Eizenga, G.C., Shakiba, E., Edwards, J., Baldo, A.M., Korniliev, P., Mccouch, S.R. 2015. Unlocking the variation hidden in rice germplasm collections with genomics. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. .  In: Abstracts, Annual Meeting, ASA-CSSA-SSSA, Minneapolis, MN  15-18 November 2015.  Available at:  https://scisoc.confex.com/scisoc/2015am/webprogram/Paper92079.html Paper 92079.Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus

- (Abstract Only)Mcclung, A.M., Jackson, A.K., Bryant, R.J., Edwards, J. 2015. Genetic architecture of grain chalk in rice and interactions with a low phytic acid locus. Agronomy Abstracts, paper number 94185, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94185.html.  ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1035.Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar

- (Abstract Only)Mcclung, A.M., Eizenga, G.C., Mccouch, S.M., Edwards, J. 2015. Greenhouse validation of yield component transgressive variation effects of wild Oryza species introgressions in an elite US rice cultivar. Agronomy Abstracts, paper number 94223, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper94223.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 1037.Rice breeding trends over 30 years for predicting response to climate change

- (Abstract Only)Mcclung, A.M., Wang, D.R., Woodard, J.D., Mccouch, S.M., Edwards, J. 2015. Rice breeding trends over 30 years for predicting response to climate change. Agronomy Abstracts, paper number 95665, Minneapolis, MN, Nov. 15-18, 2015. https://scisoc.confex.com/scisoc/2015am/webprogram/Paper95665.html. ASA-CSSA-SSSA Annual Meeting Abstracts. Poster Number 601.
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