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                    U.S. DEPARTMENT OF AGRICULTURE
 Genetics and Animal Breeding: Clay Center, NE
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ARS Home Plains Area Clay Center, Nebraska U.S. Meat Animal Research Center Genetics and Animal Breeding People & Locations







Sung Bong Shin
                        Genetics and Animal Breeding

                        




                        
                        Biologist
                        Phone: (402) 762-4359
                        
                        
                        Fax: (Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            **Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Variations in antibody repertoires correlate with vaccine responses
                                                        

- (Peer Reviewed Journal)Safonova, Y., Shin, S.B., Kramer, L., Reecy, J., Watson, C.T., Smith, T.P.L., Pevzner, P.A. 2022. Variations in antibody repertoires correlate with vaccine responses. Genome Research. 32:791-804. https://doi.org/10.1101/gr.276027.121.Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
                                                        

- (Peer Reviewed Journal)Bickhart, D.M., Kolmogorov, M., Tseng, E., Portik, D., Korobeynikov, A., Tolstoganov, I., Uritskiy, G., Liachko, I., Sullivan, S.T., Shin, S.B., Zorea, A., Andreu, V., Panke-Buisse, K., Medema, M., Mizrahi, I., Pevzner, P., Smith, T.P. 2022. Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities. Nature Biotechnology. 40:711-719. https://doi.org/10.1038/s41587-021-01130-z.Revealing how variations in antibody repertoires correlate with vaccine responses
                                                        

- (Pre-print Publication)Safonova, Y., Shin, S.B., Kramer, L., Reecy, J., Watson, C.T., Smith, T.P.L., Pevzner, P.A. 2021. Revealing how variations in antibody repertoires correlate with vaccine responses. bioRxiv. Article 454618. https://doi.org/10.1101/2021.08.06.454618.Ruminal protozoal populations of Angus steers differing in feed efficiency
                                                        

- (Peer Reviewed Journal)Clemmons, B.A., Shin, S.B., Smith, T.P.L., Embree, M.M., Voy, B.H., Schneider, L.G., Donohoe, D.R., McLean, K.J., Myer, P. 2021. Ruminal protozoal populations of Angus steers differing in feed efficiency. Animals. 11(6). Article 1561. https://doi.org/10.3390/ani11061561.Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
                                                        

- (Pre-print Publication)Bickhart, D.M., Kolmogorov, M., Tseng, E., Portik, D., Korobeynikov, A., Tolstoganov, I., Uritskiy, G., Liachko, I., Sullivan, S.T., Shin, S.B., Zorea, A., Andreu, V., Panke-Buisse, K., Medema, M., Mizrahi, I., Pevzner, P., Smith, T.P. 2021. Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing. bioRxiv. https://doi.org/10.1101/2021.05.04.442591.metaFlye: scalable long-read metagenome assembly using repeat graphs
                                                        

- (Peer Reviewed Journal)Kolmogorov, M., Bickhart, D.M., Behsaz, B., Gurevich, A., Rayko, M., Shin, S.B., Kuhn, K.L., Yuan, J., Polevikov, E., Smith, T.P.L., Pevzner, P.A. 2020. metaFlye: scalable long-read metagenome assembly using repeat graphs. Nature Methods. 17:1103-1110. https://doi.org/10.1038/s41592-020-00971-x.Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Pythium ultimum infection

- (Peer Reviewed Journal)Shin, S.B., Zheng, P., Fazio, G., Mazzola, M., Main, D., Zhu, Y. 2016. Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Pythium ultimum infection. Physiological and Molecular Plant Pathology. 94:16-26.Transcriptional regulation of auxin metabolism and ethylene biosynthesis activation during apple (Malus × domestica) fruit maturation

- (Other)Shin, S.B., Lee, J., Rudell Jr, D.R., Evans, K.C., Zhu, Y. 2016. Transcriptional regulation of auxin metabolism and ethylene biosynthesis activation during apple (Malus × domestica) fruit maturation. Journal of Plant Growth Regulation. 35:655-666.Transcript profiles of auxin efflux carrier and IAA-amido synthetase genes suggest the role of auxin on apple (Malus x domestica) fruit maturation patterns

- (Peer Reviewed Journal)Shin, S.B., Lee, J., Rudell Jr, D.R., Evans, K., Zhu, Y. 2015. Transcript profiles of auxin efflux carrier and IAA-amido synthetase genes suggest the role of auxin on apple (Malus x domestica) fruit maturation patterns. American Journal of Plant Sciences. 6:620-630.Transcriptional regulation of ethylene and jasmonate mediated defense response in apple (Malus domestica) root during Pythium ultimum infection

- (Peer Reviewed Journal)Shin, S.B., Lv, J., Mazzola, M., Zhu, Y. 2014. Transcriptional regulation of ethylene and jasmonate mediated defense response in apple (Malus domestica) root during Pythium ultimum infection. Horticulture Research. 1:53.Genome-wide identification of jasmonate biosynthetic genes and their characterization of their expression profiles during apple (Malus x domestica) fruit maturation

- (Peer Reviewed Journal)Lv, J., Rao, J., Johnson, F., Shin, S.B., Zhu, Y. 2015. Genome-wide identification of jasmonate biosynthetic genes and their characterization of their expression profiles during apple (Malus x domestica) fruit maturation. Plant Growth Regulation. 73:335-364.Transcriptome profiling on apple root defense responses to infection by Pythium ultimum

- (Proceedings)Zhu, Y., Zheng, P., Shin, S.B., Fazio, G., Mazzola, M., Main, D. 2014. Transcriptome profiling on apple root defense responses to infection by Pythium ultimum. Proceedings of 7th International Rosaceae Genomics Conference. 12.Candidate gene approach and transcriptome analysis to elucidate the defense responses in apple rootstocks against replant disease inciting pathogens

- (Abstract Only)Differential molecular response of apple rootstocks to replant disease causing soil-borne pathogens

- (Proceedings)Shin, S.B., Fazio, G., Norelli, J.L., Mazzola, M., Zhu, Y. 2014. Differential molecular response of apple rootstocks to replant disease causing soil-borne pathogens. Proceedings of 7th International Rosaceae Genomics Conference. 70.Isolation and characterization of apple Pythium ultimum response genes and their ethylene and jasmonate mediated transcriptional regulation

- (Proceedings)Shin, S.B., Fazio, G., Mazzola, M., Zhu, Y. 2014. Isolation and characterization of apple Pythium ultimum response genes and their ethylene and jasmonate mediated transcriptional regulation. Proceedings of 7th International Rosaceae Genomics Conference. 12.Differential suppression of ethylene biosynthesis and receptor genes in 'Golden Delicious' apple by preharvest and postharvest 1-MCP treatments

- (Peer Reviewed Journal)Varanasi, V., Shin, S.B., Johnson, F., Mattheis, J.P., Zhu, Y. 2013. Differential suppression of ethylene biosynthesis and receptor genes in 'Golden Delicious' apple by preharvest and postharvest 1-MCP treatments. Journal of Plant Growth Regulation. 32:585-595.Gene expression profiles of auxin metabolism in maturing apple fruit

- (Abstract Only)Shin, S.B., Mattheis, J.P., Evans, K., Zhu, Y. 2012. Gene expression profiles of auxin metabolism in maturing apple fruit. Meeting Abstract.Gene expression profiles for two auxin transporters during apple fruit maturation and ripening

- (Abstract Only)Shin, S.B., Mattheis, J.P., Evans, K., Zhu, Y. 2012. Gene expression profiles for two auxin transporters during apple fruit maturation and ripening. American Society of Horticulture Science Meeting.Expression profiles of MdACS3 gene suggest function as an accelerator of apple (Malus x domestica) fruit ripening.

- (Peer Reviewed Journal)Varanasi, V., Mattheis, J.P., Rudell Jr, D.R., Zhu, Y., Shin, S.B. 2011. Expression profiles of MdACS3 gene suggest function as an accelerator of apple (Malus x domestica) fruit ripening. Postharvest Biology and Technology. 62:141-148.


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