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 Infectious Bacterial Diseases Research: Ames, IA
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ARS Home Midwest Area Ames, Iowa National Animal Disease Center Infectious Bacterial Diseases Research People & Locations







Darrell  Bayles
                        Infectious Bacterial Diseases Research

                        




                        
                        Biologist
                        Phone: (515) 337-7165
                        
                        
                        Fax: (515) 337-7149(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsIntervention Strategies for Spirochete Diseases
                                                    In-House Appropriated
                                                                    (D)Accession Number: 441160**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Isolation and characterization of saprophytic and pathogenic strains of Leptospira from water sources in the Midwestern United States
                                                        

- (Peer Reviewed Journal)Hamond, C., LeCount, K., Anderson, T., Putz, E.J., Stuber, T., Hicks, J., Camp, P., Van Der Linden, H., Bayles, D.O., Schlater, L.K., Nally, J.E. 2024. Isolation and characterization of saprophytic and pathogenic strains of Leptospira from water sources in the Midwestern United States. Frontiers in Water. 6. https://doi.org/10.3389/frwa.2024.1278088.Concurrent colonization of rodent kidneys with multiple species and serogroups of pathogenic Leptospira
                                                        

- (Peer Reviewed Journal)Hamond, C., LeCount, K., Browne, A., Anderson, T., Stuber, T., Hicks, J., Camp, P., Fernandes, L.G., Van Der Linden, H., Goris, M.G., Bayles, D.O., Schlater, L.K., Nally, J.E. 2023. Concurrent colonization of rodent kidneys with multiple species and serogroups of pathogenic Leptospira. Applied and Environmental Microbiology. 89(10). https://doi.org/10.1128/aem.01204-23.Improved DNA amplification of the hallmark IS900 element in Mycobacterium avium subspecies paratuberculosis: a re-examination based on whole genome sequence analysis
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Stabel, J.R., Bayles, D.O., Biet, F. 2023. Improved DNA amplification of the hallmark IS900 element in Mycobacterium avium subspecies paratuberculosis: a re-examination based on whole genome sequence analysis. Applied and Environmental Microbiology. 89(2). https://doi.org/10.1128/aem.01682-22.Isolation of Leptospira kirschneri serovar Grippotyphosa from a red panda (Ailurus fulgens) after antimicrobial therapy: case report
                                                        

- (Peer Reviewed Journal)LeCount, K., Fox, K., Anderson, T., Bayles, D.O., Stuber, T., Hicks, J., Schlater, L.K., Nally, J.E. 2023. Isolation of Leptospira kirschneri serovar Grippotyphosa from a red panda (Ailurus fulgens) after antimicrobial therapy: case report. Frontiers in Veterinary Science. 9. https://doi.org/10.3389/fvets.2022.1064147.Leptospira borgpetersenii serovar Hardjo and Leptospira santarosai serogroup Pyrogenes isolated from bovine dairy herds in Puerto Rico
                                                        

- (Peer Reviewed Journal)Hamond, C., Dirsmith, K.L., LeCount, K., Soltero, F.V., Rivera-Garcia, S., Camp, P., Anderson, T., Hicks, J.A., Galloway, R., Sutherland, G., Schafer, I.J., Goris, M.G., Van Der Linden, H., Stuber, T., Bayles, D.O., Schlater, L., Nally, J.E. 2022. Leptospira borgpetersenii serovar Hardjo and Leptospira santarosai serogroup Pyrogenes isolated from bovine dairy herds in Puerto Rico. Frontiers in Veterinary Science. 9. https://doi.org/10.3389/fvets.2022.1025282.Comparative virulence and antimicrobial resistance distribution of streptococcus suis isolates obtained from the United States
                                                        

- (Peer Reviewed Journal)Nicholson, T.L., Bayles, D.O. 2022. Comparative virulence and antimicrobial resistance distribution of streptococcus suis isolates obtained from the United States. Frontiers in Microbiology. 13. https://doi.org/10.3389/fmicb.2022.1043529.Proteomic dataset comparing strains of Leptospira borgpetersenii serovar Hardjo cultured at different temperatures
                                                        

- (Peer Reviewed Journal)Putz, E.J., Fernandes, L.G., Bayles, D.O., Lippolis, J.D., Nally, J.E. 2022. Proteomic dataset comparing strains of Leptospira borgpetersenii serovar Hardjo cultured at different temperatures. Data in Brief. 45. https://doi.org/10.1016/j.dib.2022.108713.Some like it hot, some like it cold; Proteome comparison of Leptospira borgpetersenii serovar Hardjo strains propagated at different temperatures
                                                        

- (Peer Reviewed Journal)Putz, E.J., Fernandes, L., Sivasankaran, S., Bayles, D.O., Alt, D.P., Lippolis, J.D., Nally, J.E. 2022. Some like it hot, some like it cold; Proteome comparison of Leptospira borgpetersenii serovar Hardjo strains propagated at different temperatures. Journal of Proteomics. 262(2022). Article 104602. https://doi.org/10.1016/j.jprot.2022.104602.Bovine leptospirosis due to persistent renal carriage of Leptospira borgpetersenii serovar Tarassovi
                                                        

- (Peer Reviewed Journal)Hamond, C., Lecount, K., Stuber, T., Putz, E.J., Bayles, D.O., Camp, P., Goris, M.G., Van Der Linden, H., Stone, N.E., Schlater, L., Sahl, J.W., Wagner, D.M., Nally, J.E. 2022. Bovine leptospirosis due to persistent renal carriage of Leptospira borgpetersenii serovar Tarassovi. Frontiers in Veterinary Science. 9. Article 848664. https://doi.org/10.3389/fvets.2022.848664.Complete genome sequence of four strains of Leptospira borgpetersenii serovar Hardjo isolated from cattle in the Central United States
                                                        

- (Peer Reviewed Journal)Putz, E.J., Bayles, D.O., Alt, D.P., Nally, J.E. 2022. Complete genome sequence of four strains of Leptospira borgpetersenii serovar Hardjo isolated from cattle in the Central United States. Journal of Genomics. 10. Pages 45-48. https://doi.org/10.7150/jgen.69822.Lesion material from Treponema-associated Hoof Disease of wild elk induces disease pathology in the sheep Digital Dermatitis model
                                                        

- (Peer Reviewed Journal)Wilson-Welder, J.H., Olsen, S.C., Alt, D.P., Bayles, D.O., Han, S., Mansfield, K. 2022. Lesion material from Treponema-associated Hoof Disease of wild elk induces disease pathology in the sheep Digital Dermatitis model. Frontiers in Veterinary Science. 8. Article 782149. https://doi.org/10.3389/fvets.2021.782149.Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine
                                                        

- (Peer Reviewed Journal)Sharma, V.K., Akavaram, S.N., Bayles, D.O. 2022. Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine. BMC Genomics. 23. Article 107. https://doi.org/10.1186/s12864-021-08167-z.Draft genome sequences of two Bison-type and two Sheep-type strains of Mycobacterium avium subspecies paratuberculosis
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Bayles, D.O. 2021. Draft genome sequences of two Bison-type and two Sheep-type strains of Mycobacterium avium subspecies paratuberculosis. Microbiology Resource Announcements. 10(28).  Page 21. https://doi.org/10.1128/MRA.00526-21.Complete genome sequence of Escherichia coli Antibiotic-Resistance Isolate AR Bank #0346
                                                        

- (Peer Reviewed Journal)Stuart, K.L., Bayles, D.O., Shore, S., Nicholson, T.L. 2021. Complete genome sequence of Escherichia coli Antibiotic-Resistance Isolate AR Bank #0346. Microbiology Resource Announcements. 10(23). https://doi.org/10.1128/MRA.00305-21.A pseudomolecule assembly of the Rocky Mountain elk genome
                                                        

- (Peer Reviewed Journal)Masonbrink, R.E., Alt, D.P., Bayles, D.O., Boggiatto, P.M., Edwards, H., Tatum, F.M., Williams, J.E., Wilson-Welder, J.H., Wood, M., Zimin, A., Severin, A., Olsen, S.C. 2021. A pseudomolecule assembly of the Rocky Mountain elk genome. PLoS ONE. 16(4). https://doi.org/10.1371/journal.pone.0249899.Distinct transcriptional profiles of Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203 cultured at different temperatures
                                                        

- (Peer Reviewed Journal)Putz, E.J., Sivasankaran, S.K., Fernandes, L.G., Brunelle, B.W., Lippolis, J.D., Alt, D.P., Bayles, D.O., Hornsby, R.L., Nally, J.E. 2021. Distinct transcriptional profiles of Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203 cultured at different temperatures. PLOS Neglected Tropical Diseases. 15(4). Article e0009320. https://doi.org/10.1371/journal.pntd.0009320.De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification
                                                        

- (Peer Reviewed Journal)Dobson, L.K., Zimin, A., Bayles, D., Fritz-Waters, E., Alt, D., Olsen, S., Blanchong, J., Reecy, J., Smith, T.P.L., Derr, J.N. 2021. De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification. Animal Genetics. 52(3):263-274. https://doi.org/10.1111/age.13060.DeNovo assembly and annotation of the North American Bison (bison bison)reference genome and subsequent variant identification
                                                        

- (Peer Reviewed Journal)Dobson, L., Derr, J., Reecy, J., Zimin, A., Balnchong, J., Olsen, S.C., Alt, D.P., Bayles, D.O., Smith, T.P., Fritz-Waters, E., Konganti, K. 2022. DeNovo assembly and annotation of the North American Bison (bison bison)reference genome and subsequent variant identification. Animal Genetics. Animal Genetics Vol.52, Issue 3, pgs. 263-274. https://doi.org/10.1111/age.13060.Complete genome sequence of a type III ovine strain of Mycobacterium avium subspecies paratuberculosis
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Bayles, D.O., Biet, F. 2021. Complete genome sequence of a type III ovine strain of Mycobacterium avium subspecies paratuberculosis. Microbiology Resource Announcements. 10. https://doi.org/10.1128/MRA.01480-20.Diagnostic sequences that distinguish M. avium subspecies strains
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Stabel, J.R., Bayles, D.O., Condes, C., Biet, F. 2021. Diagnostic sequences that distinguish M. avium subspecies strains. Frontiers in Veterinary Science. 7. https://doi.org/10.3389/fvets.2020.620094.Comparative virulence and genomic analysis of streptococcus suis isolates
                                                        

- (Peer Reviewed Journal)Nicholson, T.L., Waack, U., Anderson, T.K., Bayles, D.O., Zaia, S.R., Goertz, I., Eppinger, M., Hau, S.J., Brockmeier, S., Shore, S. 2021. Comparative virulence and genomic analysis of streptococcus suis isolates. Frontiers in Microbiology. 11. Article 620843. https://doi.org/10.3389/fmicb.2020.620843.Population genomic analysis of Mycoplasma bovis elucidates geographical variations and genes associated with host types
                                                        

- (Peer Reviewed Journal)Kumar, R., Register, K.B., Christopher-Hennings, J., Moroni, P., Gioia, Gloria, Garcia-Fernandez, N., Nelson, J., Jelinski, M., Lysnyansky, I., Bayles, D.O., Alt, D.P., Scaria, J. 2020. Population genomic analysis of Mycoplasma bovis elucidates geographical variations and genes associated with host types. Microorganisms. 8(10). Article 1561. https://doi.org/10.3390/microorganisms8101561.Severity of bovine tuberculosis is associated with innate immune-biased transcriptional signatures of whole blood in early weeks after experimental Mycobacterium bovis infection
                                                        

- (Peer Reviewed Journal)Wiarda, J.E., Boggiatto, P.M., Bayles, D.O., Waters, R.W., Thacker, T.C., Palmer, M.V. 2020. Severity of bovine tuberculosis is associated with innate immune-biased transcriptional signatures of whole blood in early weeks after experimental Mycobacterium bovis infection. PLoS ONE. 15(11). https://doi.org/10.1371/journal.pone.0239938.Genetic diversity among Mycobacterium avium subspecies revealed by analysis of complete genome sequences
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Conde, C., Bayles, D.O., Branger, M., Biet, F. 2020. Genetic diversity among Mycobacterium avium subspecies revealed by analysis of complete genome sequences. Frontiers in Microbiology. 11. https://doi.org/10.3389/fmicb.2020.01701.Comparative virulence and genomic analysis of streptococcus suis isolates

- (Abstract Only)Complete genome sequences of 16 Mycoplasma bovis isolates from Canadian bison and cattle
                                                        

- (Peer Reviewed Journal)Register, K.B., Bayles, D.O., Ma, H., Windeyer, C., Perez-Casal, J., Bras, A., Suleman, M., Woodbury, M., Jelinski, M., Alt, D.P. 2020. Complete genome sequences of 16 Mycoplasma bovis isolates from Canadian bison and cattle. Microbiology Resource Announcements. 9(23):e00325-20. https://doi.org/10.1128/MRA.00325-20.Comparison of two multilocus sequence typing schemes for Mycoplasma bovis and revision of the pubMLST reference method
                                                        

- (Peer Reviewed Journal)Register, K.B., Lysnyansky, I., Jelinski, M., Boatwright Jr, W.D., Waldner, M., Bayles, D.O., Pilo, P., Alt, D.P. 2020. Comparison of two multilocus sequence typing schemes for Mycoplasma bovis and revision of the pubMLST reference method. Journal of Clinical Microbiology. 58(6):e00283-20. https://doi.org/10.1128/JCM.00283-20.Comparison of two schemes for multilocus sequence typing (MLST) of Mycoplasma bovis and revision of the pubMLST reference method

- (Abstract Only)Characterization of the RB51 genome sequence in the context of vaccine properties
                                                        

- (Peer Reviewed Journal)Bricker, B.J., Goonesekere, N., Bayles, D.O., Alt, D.P., Olsen, S.C., Vrentas, C.E. 2020. Genome report-a genome sequence analysis of the RB51 strain of Brucella abortus in the context of its vaccine properties. G3, Genes/Genomes/Genetics. 10(4):1175-1181. https://doi.org/10.1534/g3.119.400964.Complete genome sequence of Bordetella bronchiseptica strain KM22
                                                        

- (Peer Reviewed Journal)Nicholson, T.L., Bayles, D.O., Shore, S. 2020. Complete genome sequence of Bordetella bronchiseptica strain KM22. Microbiology Resource Announcements. 9(4). https://doi.org/10.1128/MRA.01207-19.Genomic and antigenic characterization of a cytopathic bovine viral diarrhea virus 1i isolated in the United States
                                                        

- (Peer Reviewed Journal)Neill, J.D., Crossley, B.M., Mosena, A.C., Ridpath, J.F., Bayles, D.O., Killian, M.L., Falkenberg, S.M. 2019. Genomic and antigenic characterization of a cytopathic bovine viral diarrhea virus 1i isolated in the United States. Virology. 535:279-282. https://doi.org/10.1016/j.virol.2019.07.020.Transcriptomic differences noted in Glasserella parasuis between growth in broth and on agar
                                                        

- (Peer Reviewed Journal)Brockmeier, S., Hau, S.J., Mou, K.T., Bayles, D.O. 2019. Transcriptomic differences noted in Glasserella parasuis between growth in broth and on agar. PLoS One. 14(8):e0220365. https://doi.org/10.1371/journal.pone.0220365.Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7
                                                        

- (Peer Reviewed Journal)Sharma, V.K., Akavaram, S.N., Schaut, R.G., Bayles, D.O. 2019. Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7. BMC Genomics. 20:196. https://doi.org/10.1186/s12864-019-5568-6.Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7
                                                        

- (Peer Reviewed Journal)Sharma, V.K., Akavaram, S.N., Schaut, R.G., Bayles, D.O. 2019. Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7. BMC Genomics. 20(1). Article 196. https://doi.org/10.1186/s12864-019-5568-6.Identification of BVDV2b and 2c subgenotypes in the United States: genetic and antigenic characterization
                                                        

- (Peer Reviewed Journal)Neill, J.D., Workman, A.M., Hesse, R., Bai, J., Poulsen-Porter, E., Meadors, B., Anderson, J., Bayles, D.O., Falkenberg, S.M. 2019. Identification of BVDV2b and 2c subgenotypes in the United States: genetic and antigenic characterization. Virology. 528:19-29. https://doi.org/10.1016/j.virol.2018.12.002.Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates
                                                        

- (Peer Reviewed Journal)Nicholson, T.L., Brunelle, B.W., Bayles, D.O., Alt, D.P., Shore, S. 2018. Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates. PLoS One. 13(11):e0205700. https://doi.org/10.1371/journal.pone.0205700.Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis
                                                        

- (Peer Reviewed Journal)Boggiatto, P.M., Vrentas, C.E., Fitzsimmons, D.J., Bayles, D.O., Alt, D.P., Olsen, S.C. 2018. Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis. BioMed Central (BMC) Molecular Biology. 19:10. https://doi.org/10.1186/s12867-018-0111-x.Isolation and characterization of pathogenic leptospires associated with cattle
                                                        

- (Peer Reviewed Journal)Nally, J.E., Hornsby, R.L., Alt, D.P., Bayles, D.O., Wilson-Welder, J.H., Bauer, N.E. 2018. Isolation and characterization of pathogenic leptospires associated with cattle. Veterinary Microbiology. 218:25-30. https://doi.org/10.1016/j.vetmic.2018.03.023.Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli

- (Abstract Only)Molecular genetic analysis of a large Mycobacterium avium subsp. paratuberculosis mutant bank

- (Abstract Only)Rathnaiah, G., Bayles, D.O., Stabel, J.R., Zinniel, D., Bannantine, J.P., Grohn, Y.T., Barletta, R.G. 2017. Molecular genetic analysis of a large Mycobacterium avium subsp. paratuberculosis mutant bank. Meeting Abstract. P010/144.Draft genome sequences of 64 swine associated LA-MRSA ST5 isolates from the USA

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of 63 swine-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates from the United States. Genome Announcements. 5(44):e01081-17.Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli

- (Abstract Only)Miller, L.C., Fleming, D., Li, X., Bayles, D., Blecha, F., Sang, Y. 2017. Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli. 98th Conference of Research Workers in Animal Diseases. Abstract No. 237, p. 131.Comparison of the transcriptome response within the tracheobronchial lymphnode following infection with PRRSV, PCV2 or SIV

- (Abstract Only)Miller, L.C., Fleming, D., Harhay, G., Bayles, D., Kehrli, M., Lager, K. 2017. Comparison of the transcriptome response within the tracheobronchial lymphnode following infection with PRRSV, PCV2, or SIV. 98th Conference of Research Workers in Animal Diseases. Abstract No. 190, p. 107.Draft genome sequences of 50 MRSA ST5 isolates obtained from a U.S. hospital

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of 50 methicillin-resistant Staphylococcus aureus sequence type 5 isolates obtained from a U.S. hospital. Genome Announcements. 5(44):e01083-17.Draft genome sequences of 9 LA-MRSA ST5 isolates from humans with long term swine contact

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Davies, P.R., Haan, J.S., Nicholson, T.L. 2017. Draft genome sequences of nine livestock-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates from humans with long-term swine contact. Genome Announcements. 5(41):e01079-17.Draft genome sequences of 9 LA-MRSA ST5 isolates obtained from humans after short term swine contact

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of nine livestock-associated methicillin-resistant Staphylococcus aureus sequence type 5 isolates obtained from humans after short-term swine contact. Genome Announcements. 5(41):e01080-17.Draft genome sequences of 14 swine associated LA-MRSA ST398 isolates from the U.S.

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Draft genome sequences of 14 livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 isolates from swine farms in the United States. Genome Announcements. 5(44):e01082-17.Draft genome sequences of 1 MSSA and 7 MRSA ST5 isolates obtained from California

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of one methicillin-sensitive and seven methicillin-resistant Staphylococcus aureus sequence type 5 Isolates obtained in California. Genome Announcements. 5(42):e01084-17.Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells at differential activation statuses
                                                        

- (Peer Reviewed Journal)Miller, L.C., Fleming, D.S., Li, X., Bayles, D.O., Blecha, F., Sang, Y. 2017. Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli. PLoS One. 12(7):e0181256. https://doi.org/10.1371/journal.pone.0181256.The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome
                                                        

- (Peer Reviewed Journal)Johnson, T.A., Looft, T.P., Severin, A.J., Bayles, D.O., Nasko, D.J., Wommack, E., Howe, A., Allen, H.K. 2017. The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome. mBio. 8(4):e00709-17. https://doi.org/10.1128/mBio.00709-17.Complete genome sequence of livestock associated methicillin resistant Staphylococcus aureus ST398 isolated from swine in USA
                                                        

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Complete genome sequence of livestock-associated methicillin-resistant Staphylococcus aureus sequence type 398 isolated from swine in the United States. Genome Announcements. 5(32):pii: e00790-17. https://doi.org/10.1128/genomeA.00790-17.Complete genome sequence of a swine associated LA-MRSA ST5 isolate from the USA
                                                        

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Frana, T.S., Nicholson, T.L. 2017. Complete genome sequence of a swine associated LA-MRSA ST5 isolate from the USA. Genome Announcements. 5(32):e00791-17. https://doi.org/10.1128%2FgenomeA.00791-17.Cell wall peptidolipids of Mycobacterium avium: from genetic prediction to exact structure of a nonribosomal peptide
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Etienne, G., Laval, F., Lemassu, A., Daffe, M., Bayles, D.O., Ganneau, C., Bonhomme, F., Branger, M., Cochard, T., Bay, S., Biet, F., Stabel, J.R. 2017. Cell wall peptidolipids of Mycobacterium avium: from genetic prediction to exact structure of a nonribosomal peptide. Molecular Microbiology. 105(4):525-539. https://doi.org/10.1111/mmi.13717.Comparative genomic and transcriptional analysis of virulent and non-virulent Haemophilus parasuis isolates

- (Abstract Only)Transcriptomic analysis reveals the potential of highly pathogenic PRRS virus to modulate immune system activation related to host-pathogen and damage associated signaling in infected porcine monocytes

- (Abstract Only)Salmonella DIVA vaccine reduces disease, colonization and shedding due to virulent S. Typhimurium infection in swine
                                                        

- (Peer Reviewed Journal)Bearson, B.L., Bearson, S.M., Brunelle, B.W., Bayles, D.O., Lee, I., Kich, J.D. 2017. Salmonella DIVA vaccine reduces disease, colonization and shedding due to virulent S. Typhimurium infection in swine. Journal of Medical Microbiology. 66:651-661. doi: 10.1099/jmm.0.000482.Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses, and metabolism

- (Peer Reviewed Journal)Sharma, V.K., Bayles, D.O., Alt, D.P., Looft, T.P., Brunelle, B.W., Stasko, J.A. 2017. Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses, and metabolism. BMC Microbiology. 17(1):56. doi: 10.1186/s12866-017-0966-x.Complete genome sequences of two Staphylococcus aureus ST5 isolates from California, USA

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Complete genome sequences of two Staphylococcus aureus sequence type 5 isolates from California, USA. Genome Announcements. 5:e00099-17. doi.org/10.1128/genomeA.00099-17.Draft genome sequences of 14 Staphylococcus aureus ST5 isolates from California, USA

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Nicholson, T.L. 2017. Draft genome sequences of 14 Staphylococcus aureus sequence type 5 isolates from California, USA. Genome Announcements. 5(13):e00098-17. doi.org/10.1128/genomeA.00098-17.Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Crocidura russula) is associated with a novel serovar of pathogenic Leptospira in Ireland

- (Peer Reviewed Journal)Nally, J.E., Bayles, D.O., Hornsby, R.L., Arent, Z., Gilmore, C., Regan, S., McDevitt, A.D., Yearsley, J., Fanning, S., McMahon, B.J. 2016. Emerging infectious disease implications of invasive mammalian species: the greater white-toothed shrew (Crocidura russula) is associated with a novel serovar of pathogenic Leptospira in Ireland. PLOS Neglected Tropical Diseases. 10(12):e0005174.Complete genome sequences of curli-negative and curli-positive isolates of foodborne Escherichia coli O157:H7 strain 86-24

- (Peer Reviewed Journal)Sharma, V.K., Bayles, D.O., Alt, D.P., Looft, T.P. 2016. Complete genome sequences of curli-negative and curli-positive isolates of foodborne Escherichia coli O157:H7 strain 86-24. Genome Announcements. 4(6):e01323-16. doi: 10.1128/genomeA.01323-16.A tandem duplication of a 5-bp sequence in the rcsB gene confers biofilm-producing phenotype in Escherichia coli O157:H7 strain 86-24

- (Abstract Only)Temporal dynamics of ‘HoBi’-like pestivirus quasispecies in persistently infected calves generated under experimental conditions
                                                        

- (Peer Reviewed Journal)Weber, M.N., Bauermann, F.V., Canal, C.W., Bayles, D.O., Neill, J.D., Ridpath, J.F. 2016. Temporal dynamics of ‘HoBi’-like pestivirus quasispecies in persistently infected calves generated under experimental conditions. Journal of Virology. 227(2017):23-33: doi: 10.1016/j.virusres.2016.09.018.Complete genome sequence of Leptospira alstonii serovar room 22, strain GWTS#1

- (Peer Reviewed Journal)Nally, J.E., Bayles, D.O., Hurley, D., Fanning, S., McMahon, B.J., Arent, Z. 2016. Complete genome sequence of Leptospira alstonii serovar room 22, strain GWTS#1. Genome Announcements. pii: e01230-16. doi: 10.1128/genomeA.01230-16.Function and phylogeny of bacterial butyryl coenzyme A:acetate transferases and their diversity in the proximal colon of swine
                                                        

- (Peer Reviewed Journal)Trachsel, J., Bayles, D.O., Looft, T.P., Levine, U.Y., Allen, H.K. 2016. Function and phylogeny of bacterial butyryl coenzyme A:acetate transferases and their diversity in the proximal colon of swine. Applied and Environmental Microbiology. 82(22):6788-6798. http://dx.doi.org/10.1128/AEM.02307-16.Comparative analysis of signature genes in porcine reproductive and respiratory syndrome virus (PRRSV)-infected porcine monocyte-derived dendritic cells at differential activation statuses

- (Abstract Only)Comparison of ‘HoBi’-like viral populations among persistent infected calves generated under experimental conditions and to inoculum virus

- (Peer Reviewed Journal)Weber, M.N., Bauermann, F.V., Bayles, D.O., Canal, C.W., Neill, J.D., Ridpath, J.F. 2016. Comparison of ‘HoBi’-like viral populations among persistent infected calves generated under experimental conditions and to inoculum virus. Virology. 492:225-231. doi: 10.1016/j.virol.2016.03.001.Analysis of Mycobacterium avium subsp. paratuberculosis mutant libraries reveals loci-dependent transcription biases and strategies to novel mutant discovery

- (Peer Reviewed Journal)Rathnaiah, G., Bannantine, J.P., Bayles, D.O., Zinniel, D.K., Stabel, J.R., Grohn, Y.T., Barletta, R.G. 2016. Analysis of Mycobacterium avium subsp. paratuberculosis mutant libraries reveals loci-dependent transcription biases and strategies to novel mutant discovery. Microbiology. 162:633-641. doi: 10.1099/mic.0.000258.Comparative genomic analysis of the swine pathogen Bordetella bronchiseptica strain KM22 to other B. bronchiseptica sequenced genomes

- (Peer Reviewed Journal)Nicholson, T.L., Shore, S., Register, K.B., Bayles, D.O., Kingsley, R.A., Brunelle, B.W. 2016. Comparative genomic analysis of the swine pathogen Bordetella bronchiseptica strain KM22. Veterinary Microbiology. 182:87-94.Effects of pseudorabies virus infection on the tracheobronchial lymph node transcriptome

- (Peer Reviewed Journal)Miller, L.C., Bayles, D.O., Zanella, E.L., Lager, K.M., 2016. Effects of pseudorabies virus infection on the tracheobronchial lymph node transcriptome. Bioinformatics and Biology Insights. 9(Suppl 2):25-36.Analysis of Mycobacterium avium subspecies paratuberculosis mutant libraries reveals loci-dependent transposition biases and strategies to novel mutant discovery

- (Abstract Only)Rathnaia, G., Bannantine, J.P., Bayles, D.O., Zinniel, D., Stabel, J.R., Grohn, Y., Barletta, R. 2015. Analysis of Mycobacterium avium subspecies paratuberculosis mutant libraries reveals loci-dependent transposition biases and strategies to novel mutant discovery. Meeting Abstract. Rathnaia, G., Bannantine, J.P., Bayles, D., Zinniel, D., Stabel, J.R., Grohn, Y., Barletta, R., 2015. CRWAD Conference.Draft genome sequences of nine Streptococcus suis strains isolated in the United States

- (Peer Reviewed Journal)Hau, S.J., Bayles, D.O., Alt, D.P., Brockmeier, S.L., Frana, T.S., Nicholson, T.L. 2015. Draft genome sequences of nine Streptococcus suis strains isolated in the United States. Genome Announcements. 3(6):e01301-15.Complete genome sequence of Coriobacteriaceae Strain 68-1-3, a novel mucus- degrading isolate from the swine intestinal tract

- (Peer Reviewed Journal)Comparison of the breadth and complexity of bovine viral diarrhea (BVDV) populations circulating in 34 persistently infected cattle generated in one outbreak
                                                        

- (Peer Reviewed Journal)Ridpath, J.F., Bayles, D.O., Neill, J.D., Falkenberg, S.M., Bauermann, F.F., Holler, L., Braun, L.J., Young, D.B., Kane, S.E., Chase, C.C. 2015. Comparison of the breadth and complexity of bovine viral diarrhea (BVDV) populations circulating in 34 persistently infected cattle generated in one outbreak. Virology. 485:297-304. doi. 10.1016/j.virol.2015.07.022.Comparative transcriptional profiling reveals differential expression of pathways directly and indirectly influencing biofilm formation in Escherichia coli O157:H7

- (Abstract Only)Sharma, V.K., Alt, D.P., Bayles, D.O., Looft, T.P., Brunelle, B.W. 2015. Comparative transcriptional profiling reveals differential expression of pathways directly and indirectly influencing biofilm formation in Escherichia coli O157:H7 [abstract]. Verocytotoxin Producing Escherichia Coli. p. 119.Complete genome sequence of Leptospira interrogans serovar Bratislava, strain PigK151

- (Peer Reviewed Journal)Alt, D.P., Wilson-Welder, J.H., Bayles, D.O., Cameron, C., Adler, B., Bulach, D.M., Seemann, T., Lehane, M.J., Haines, L.R., Darby, A.C., Hall, N., Radford, A.D., Zuerner, R.L. 2015. Complete genome sequence of Leptospira interrogans serovar Bratislava, strain PigK151. Genome Announcements. 3(3):e00678-15. DOI: 10.1128/genomeA.00678-15.Genome sequences of serotype A6 Mannheimia haemolytica isolates D174 and D38 recovered from bovine pneumonia
                                                        

- (Peer Reviewed Journal)Hauglund, M.J., Tatum, F.M., Bayles, D.O., Maheswaran, S.K., Briggs, R.E. 2015. Genome sequences of serotype A6 Mannheimia haemolytica isolates D174 and D38 recovered from bovine pneumonia. Genome Announcements. 3(2):e00093-15. DOI: 10.1128/genomeA.00086-15.Genome sequences of Mannheimia haemolytica serotype A2 isolates D171 and D35, recovered from bovine pneumonia
                                                        

- (Peer Reviewed Journal)Hauglund, M.J., Tatum, F.M., Bayles, D.O., Maheswaran, S.K., Briggs, R.E. 2015. Genome sequences of Mannheimia haemolytica serotype A2 isolates D171 and D35, recovered from bovine pneumonia. Genome Announcements. 3(2):1e00093-15. DOI 10.1128/genomeA.00093-15.Complete genome sequence of Ornithobacterium rhinotracheal strain ORT-UMN 88
                                                        

- (Peer Reviewed Journal)Zehr, E.S., Bayles, D.O., Boatwright Jr, W.D., Tabatabai, L.B., Register, K.B. 2014. Complete genome sequence of Ornithobacterium rhinotracheal strain ORT-UMN 88. Standards in Genomic Sciences. 9:16. DOI: 10.1186/1944-3277-9-16.Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791
                                                        

- (Peer Reviewed Journal)Zehr, E.S., Bayles, D.O., Boatwright Jr, W.D., Tabatabai, L.B., Register, K.B. 2014. Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791. Standards in Genomic Sciences. 9:14. DOI: 10.1186/1944-3277-9-14.Draft genome sequence of the Bordetella bronchiseptica swine isolate KM22
                                                        

- (Peer Reviewed Journal)Nicholson, T.L., Shore, S., Bayles, D.O., Register, K.B., Kingsley, R.A. 2014. Draft genome sequence of the Bordetella bronchiseptica swine isolate KM22. Genome Announcements. 2(4). e00670-14. DOI: 10.1128/genomeA.00670-14.Simultaneous rapid sequencing of multiple RNA virus genomes
                                                        

- (Peer Reviewed Journal)Neill, J.D., Bayles, D.O., Ridpath, J.F. 2014. Simultaneous rapid sequencing of multiple RNA virus genomes. Journal of Virological Methods. 201:68-72. DOI: 10.1016/j.viromet.2014.02.016.Bacteria, phages, and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations
                                                        

- (Peer Reviewed Journal)Looft, T.P., Allen, H.K., Cantarel, B., Levine, U.Y., Bayles, D.O., Alt, D.P., Henrissat, B., Stanton, T.B. 2014. Bacteria, phages, and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. Journal of the International Society for Microbial Ecology. 8(8):1566-1576. DOI: 10.1038/ismej.2014.12.Draft genome sequence of a Mycobacterium avium complex isolate from a broadbill bird
                                                        

- (Peer Reviewed Journal)Bannantine, J.P., Bayles, D.O., Robbe-Austerman, S., Burrell, A.M., Stabel, J.R. 2014. Draft genome sequence of a Mycobacterium avium complex isolate from a broadbill bird. Genome Announcements. 2(1):1.Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion
                                                        

- (Peer Reviewed Journal)Wilson-Welder, J.H., Elliott, M.K., Zuerner, R.L., Bayles, D.O., Alt, D.P., Stanton, T.B. 2013. Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion. BMC Microbiology. 13:280. Available: http://www.biomedcentral.com/content/pdf/1471-2180-13-280.pdf.Genome sequences of Mannheimia haemolytica serotype A1 strains D153 and D193 from bovine pneumonia

- (Peer Reviewed Journal)Hauglund, M.J., Tatum, F.M., Bayles, D.O., Maheswaran, S.K., Briggs, R.E. 2013. Genome sequences of Mannheimia haemolytica serotype A1 strains D153 and D193 from bovine pneumonia. Genome Announcements. 1(5). DOI: 10.1128/genomeA.00848-13.Genome sequences of Mannheimia haemolytica serotype A1 strains D153 and D193 from bovine pneumonia
                                                        

- (Peer Reviewed Journal)Hauglund, M.J., Tatum, F.M., Bayles, D.O., Maheswaran, S.K., Briggs, R.E. 2013. Genome sequences of Mannheimia haemolytica serotype A1 strains D153 and D193 from bovine pneumonia. Genome Announcements. 1(5):e00848-13. DOI: 10.1128/genomeA.00848-13.Dynamic phages in the swine gut ecosystem

- (Abstract Only)Allen, H.K., Looft, T.P., Bayles, D.O., Alt, D.P., Stanton, T.B. 2013. Dynamic phages in the swine gut ecosystem [abstract]. Molecular Genetics of Bacteria and Phage Meeting. p. 94.The agricultural antibiotic carbadox induces generalized transducing phage in multidrug-resistant Salmonella enterica serovar Typhimurium DT104

- (Abstract Only)Bearson, B.L., Brunelle, B.W., Allen, H.K., Bayles, D.O., Stanton, T.B. 2013. The agricultural antibiotic carbadox induces generalized transducing phage in multidrug-resistant Salmonella enterica serovar Typhimurium DT104. Abstracts of the 2013 Molecular Genetics of Bacteria and Phages Meeting, August 6-10, 2013, Madison, Wisconsin. p. 95.Porcine granulocyte-colony stimulating factor (G-CSF) delivered via replication-defective adenovirus induces a sustained increase in circulating peripheral blood neutrophils

- (Peer Reviewed Journal)Loving, C.L., Kehrli, M.E., Brockmeier, S.L., Bayles, D.O., Michael, D.D., Schlink, S.N., Lager, K.M. 2013. Porcine granulocyte-colony stimulating factor (G-CSF) delivered via replication-defective adenovirus induces a sustained increase in circulating peripheral blood neutrophils. Biologicals. Available: http://dx.doi.org/10.1016/j.biologicals.2013.07.001.Gene expression changes in the swine microbiota with the in-feed antibiotic carbadox

- (Abstract Only)Looft, T.P., Allen, H.K., Severin, A., Levine, U.Y., Bayles, D.O., Alt, D.P., Stanton, T.B. 2013. Gene expression changes in the swine microbiota with the in-feed antibiotic carbadox. [abstract]. 113th General Meeting, American Society for Microbiology. p. 200.A divergent clade of circular single-stranded DNA viruses from pig feces

- (Peer Reviewed Journal)Cheung, A.K., Ng, T.F., Lager, K.M., Bayles, D.O., Alt, D.P., Delwart, E.L., Pogranichniy, R.M., Kehrli, Jr., M.E. 2013. A divergent clade of circular single-stranded DNA viruses from pig feces. Archives of Virology. 158(10):2157-2162.Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host

- (Peer Reviewed Journal)Bearson, S.M., Allen, H.K., Bearson, B.L., Looft, T.P., Brunelle, B.W., Kich, J.D., Tuggle, C.K., Bayles, D.O., Alt, D.P., Levine, U.Y., Stanton, T.B. 2013. Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the natural porcine host. Infection, Genetics and Evolution. 16:330-340.The agricultural antibiotic carbadox induces prophage and antibiotic resistance gene transfer in multidrug-resistant salmonella enterica serovar typhimurium DT104

- (Abstract Only)Bearson, B.L., Brunelle, B.W., Allen, H.K., Bayles, D.O., Stanton, T.B. 2013. The agricultural antibiotic carbadox induces prophage and antibiotic resistance gene transfer in multidrug-resistant salmonella enterica serovar typhimurium DT104. Abstracts of the 113th General Meeting of the American Society for Microbiology, May 18-21, 2013, Denver, Colorado. Paper No. #M-1103.Pathogenicity and transmission of the novel A (H3N2v) influenza virus isolated from humans in experimentally inoculated pigs

- (Abstract Only)Draft genome sequences of two virulent serotypes of avian Pasteurella multocida

- (Peer Reviewed Journal)Abrahante, J.E., Johnson, T.J., Hunter, S.S., Maheswaran, S.K., Hauglund, M.J., Bayles, D.O., Tatum, F.M., Briggs, R.E. 2013. Draft genome sequences of two virulent serotypes of avian Pasteurella multocida. Genome Announcements. 1(1):e00058. DOI:10.1128/genomeA.00058-12.A curated public database for multilocus sequence typing (MLST) and analysis of Haemophilus parasuis based on an optimized typing scheme

- (Peer Reviewed Journal)Mullins, M., Register, K.B., Brunelle, B.W., Aragon, V., Galofre-Mila, N., Bayles, D.O., Jolley, K.A. 2013. A curated public database for multilocus sequence typing (MLST) and analysis of Haemophilus parasuis based on an optimized typing scheme. Veterinary Microbiology. 162(2-4):899-906.Estimation of viral richness from shotgun metagenomes using a frequency count approach

- (Peer Reviewed Journal)Allen, H.K., Bunge, J., Foster, J.A., Bayles, D.O., Stanton, T.B. 2013. Estimation of viral richness from shotgun metagenomes using a frequency count approach. BMC Microbiome. 1(5). Available: http://www.microbiomejournal.com/content/1/1/5.Swine tracheobronchial lymph node mRNA responses in swine infected with a highly pathogenic strain of porcine reproductive and respiratory syndrome virus

- (Abstract Only)Miller, L.C., Fleming, D., Arbogast, A., Bayles, D.O., Guo, B., Lager, K.M., Henningson, J.N., Schlink, S.N., Yang, H., Faaberg, K.S., Kehrli, Jr., M.E. 2012. Swine tracheobronchial lymph node mRNA responses in swine infected with a highly pathogenic strain of porcine reproductive and respiratory syndrome virus. 2012 International PRRS Symposium. p. 96.Diversity of viruses detected by deep sequencing in pigs from a common background

- (Peer Reviewed Journal)Lager, K.M., Ng, T.F., Bayles, D.O., Alt, D.P., Delwart, E.L., Cheung, A.K. 2012. Diversity of viruses detected by deep sequencing in pigs from a common background. Journal of Veterinary Diagnostic Investigation. 24(6):1177-1179.Analysis of the swine tracheobronchial lymphnode transcriptomic response to infection with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus

- (Peer Reviewed Journal)Miller, L.C., Fleming, D., Arbogast, A., Bayles, D.O., Guo, B., Lager, K.M., Henningson, J.N., Schlink, S.N., Yang, H.-C., Faaberg, K.S., Kehrli, Jr., M.E. 2012. Analysis of the swine tracheobronchial lymph node transcriptomic response to infection with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus. BioMed Central (BMC) Veterinary Research. 8(1):208. Available: http://www.biomedcentral.com/1746-6148/8/208.Analysis of the swine tracheobronchial lymphnode transcriptomic response to infection with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus

- (Abstract Only)Comparison of 2010-2011 H3N2 influenza A viruses isolated from swine and the A(H3N2)v isolated from humans in 2011

- (Abstract Only)Kitikoon, P., Vincent, A.L., Gauger, P., Schlink, S.N., Bayles, D.O., Gramer, M., Darnell, D., Webby, R., Lager, K.M., Swenson, S., Klimov, A. 2012. Comparison of 2010-2011 H3N2 influenza A viruses isolated from swine and the A(H3N2)v isolated from humans in 2011 [abstract]. American Society for Virology 31st Annual Meeting. p. 102.Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the porcine host

- (Abstract Only)Bearson, S.M., Allen, H.K., Bearson, B.L., Looft, T.P., Brunelle, B.W., Kich, J.D., Bayles, D.O., Alt, D.P., Levine, U.Y., Stanton, T.B. 2012. Profiling the gastrointestinal microbiota in response to Salmonella: low versus high Salmonella shedding in the porcine host [abstract]. American Society for Microbiology General Meeting, June 16-19, 2012, San Francisco, California. p. 3150.Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011

- (Peer Reviewed Journal)Kitikoon, P., Vincent, A.L., Gauger, P.C., Schlink, S.N., Bayles, D.O., Gramer, M.R., Darnell, D., Webby, R.J., Lager, K.M., Swenson, S.L., Klimov, A. 2012. Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011. Journal of Virology. 86(12):6804-6814.Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offer insights into host association

- (Peer Reviewed Journal)Bannantine, J.P., Wu, C., Hsu, C., Zhou, S., Schwartz, D.C., Bayles, D.O., Paustian, M.L., Alt, D.P., Sreevatsan, S., Kapur, V., Talaat, A.M. 2012. Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association. Biomed Central (BMC) Genomics. 13:89. Available: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337245/pdf/1471-2164-13-89.pdf.DNA sequence and analysis of a 90.1 kb virulence plasmid in shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75

- (Peer Reviewed Journal)Yan, X., Fratamico, P.M., Needleman, D.S., Bayles, D.O. 2012. DNA sequence and analysis of a 90.1 kb virulence plasmid in shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75. Plasmid Journal. 68:25-32.In-feed antibiotic effects on the swine intestinal microbiome

- (Peer Reviewed Journal)Looft, T.P., Johnson, T., Allen, H.K., Bayles, D.O., Alt, D.P., Cole, J., Hashsham, S., Stedtfeld, R., Stedtfeld, T., Chai, B., Tiedje, J., Stanton, T.B. 2012. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences. 109(5):1691-1696.Antibiotics in feed induce prophages in swine fecal microbiomes

- (Peer Reviewed Journal)Allen, H.K., Looft, T.P., Bayles, D.O., Humphrey, S.B., Levine, U.Y., Alt, D.P., Stanton, T.B. 2011. Antibiotics in feed induce prophages in swine fecal microbiomes. mBio [serial online]. 2(6). Available: http://mbio.asm.org/content/2/6/e00260-11.Genome sequence of Haemophilus parasuis strain 29755

- (Peer Reviewed Journal)Mullins, M.A., Register, K.B., Bayles, D.O., Dyer, D.W., Kuehn, J.S., Phillips, G.J. 2011. Genome sequence of Haemophilus parasuis strain 29755. Standards in Genomic Sciences. 5(1):61-68.Large scale parallel pyrosequencing technology: PRRSV strain VR-2332 nsp2 deletion mutant stability in swine

- (Peer Reviewed Journal)Guo, B., Vorwald, A.C., Alt, D.P., Lager, K.M., Bayles, D.O., Faaberg, K.S. 2011. Large scale parallel pyrosequencing technology: PRRSV strain VR-2332 nsp2 deletion mutant stability in swine. Virus Research. 161(2):162-169.The application and performance of single nucleotide polymorphism markers for population genetic analyses of Lepidoptera

- (Peer Reviewed Journal)Coates, B.S., Bayles, D.O., Wanner, K.W., Robertson, H.M., Hellmich II, R.L., Sappington, T.W. 2011. The application and performance of single nucleotide polymorphism markers for population genetic analyses of Lepidoptera. Frontiers in Genetics. 2(38):1-10.Haemophilus parasuis exhibits IgA protease activity but lacks homologs of the IgA protease genes of Haemophilus influenzae

- (Peer Reviewed Journal)Mullins, M.A., Register, K.B., Bayles, D.O., Butler, J.E. 2011. Haemophilus parasuis exhibits IgA protease activity but lacks homologs of the IgA protease genes of Haemophilus influenzae. Veterinary Microbiology. 153(3-4):407-412.Transcriptome sequencing, and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae)

- (Peer Reviewed Journal)Margam, V.M., Coates, B.S., Bayles, D.O., Hellmich II, R.L., Agunbiade, T., Seufferheld, M.J., Sun, W., Kroemer, J.A., Ba, M.N., Binso-Dabire, C.L., Baoua, I., Ishiyaku, M.F., Covas, F.G., Srinivasan, R., Armstrong, J., Murdock, L.L., Pittendrigh, B.R. 2011. Transcriptome sequencing, and rapid development and application of SNP markers for the legume pod borer Maruca vitrata (Lepidoptera: Crambidae). PLoS One. 6(7):e21388.A curated multi-locus sequence typing (MLST) database for Haemophilus parasuis

- (Abstract Only)Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008

- (Peer Reviewed Journal)Lorusso, A., Vincent, A.L., Harland, M.L., Alt, D., Bayles, D.O., Swenson, S.L., Gramer, M.R., Russel, C.A., Smith, D.J., Lager, K.M., Lewis, N.S. 2011. Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008. Journal of General Virology. 92(Pt 4):919-930.G-CSF Analogue Treatment Increases Peripheral Neutrophil Numbers in Pigs - a Potential Alternative for In-Feed Antibiotics

- (Abstract Only)Loving, C.L., Brockmeier, S.L., Bayles, D.O., Greenlee, J.J., Lager, K.M., Kehrli, Jr., M.E. 2010. G-CSF analogue treatment increases peripheral neutrophil numbers in pigs - a potential alternative for in-feed antibiotics. Conference of Research Workers in Animal Diseases. Paper No. 140.Immunologic responses to Mycobacterium avium subsp. paratuberculois protein cocktail vaccines in a mouse model

- (Proceedings)Barnhill, A.E., Bannantine, J.P., Chang, Y., Osman, M., Bayles, D.O., Stabel, J.R. 2010. Immunologic responses to Mycobacterium avium subsp. paratuberculosis protein cocktail vaccines in a mouse model. In: Proceedings of Conference of Research Workers in Animal Diseases, December 6-8, 2010, Chicago, Illinois. p. 15.Genetic and Antigenic Characterization of H1 Influenza Viruses from United States Swine Prior to the Emergence of the 2009 Pandemic H1N1

- (Abstract Only)Lorusso, A., Vincent, A., Harland, M., Alt, D., Bayles, D., Swenson, S., Gramer, M., Russell, C., Smith, D., Lager, K., Lewis, N. 2010. Genetic and antigenic characterization of H1 Influenza Viruses from United States swine prior to the emergence of the 2009 pandemic H1N1 [abstract]. Conference of Research Workers in Animal Diseases. Paper No. 194.Transcript Expression Analysis in Tracheobronchial Lymph Nodes of Pseudorabies Virus Infected Pigs

- (Abstract Only)Miller, L.C., Harhay, G.P., Bayles, D.O., Zanella, E.L., Lager, K.M. 2010. Transcript expression analysis in tracheobronchial lymph nodes of pseudorabies virus infected pigs [abstract]. Conference of Research Workers in Animal Diseases. Paper No. 115P.Immunlogic responses to Mycobacterium avium subsp. paratuberculosis protein cocktail vaccines in a mouse model

- (Abstract Only)Barnhill, A.E., Bannantine, J.P., Chang, Y., Osman, M.A., Bayles, D.O., Stabel, J.R. 2010. Immunlogic responses to Mycobacterium avium subsp. paratuberculosis protein cocktail vaccines in a mouse model [abstract]. U.S.-Japan Cooperative Program in Natural Resources Panel of Animal and Avian Health. p. 15.Transcript Expression Analysis in Tracheobronchial Lymph Nodes of Pseudorabies Virus Infected Pigs

- (Abstract Only)Miller, L.C., Harhay, G.P., Bayles, D.O., Zanella, E.L., Lager, K.M. 2010. Transcript expression analysis in tracheobronchial lymph nodes of pseudorabies virus infected pigs [abstract]. 45th Meeting of the United States-Japan Cooperative Program in Natural Resources Panel of Animal and Avian Health. p. 11.Transcript Expression Analysis in Tracheobronchial Lymph Nodes of Pseudorabies Virus Infected Pigs

- (Abstract Only)Miller, L.C., Harhay, G.P., Bayles, D.O., Zanella, E.L., Lager, K.M. 2010. Transcript Expression Analysis in Tracheobronchial Lymph Nodes of Pseudorabies Virus Infected Pigs [abstract]. 32nd Conference for the International Society for Animal Genetics. Paper No. P105.Genome Sequence of Mycobacterium avium subspecies paratuberculosis Sheep Isolate 397 Reveals Striking Differences Among a Genetically Homogeneous Subspecies

- (Abstract Only)Metagenomic and 16S rRNA Analyses of Fecal Bacteria of Swine Given Diets Containing Antibiotics

- (Abstract Only)Genetic and Antigenic Characterization of 2008 Swine Influenza Viruses from the United States

- (Proceedings)Vincent, A.L., Harland, M.L., Lorusso, A., Alt, D.P., Bayles, D.O., Swenson, S.L., Gramer, M.R., Lager, K.M., Lewis, N. 2010. Genetic and Antigenic Characterization of 2008 Swine Influenza Viruses from the United States. In: Proceedings of the International Pig Veterinary Society Congress, July 18-21, 2010, Vancouver, Canada. p. 259.Characteristics of an Extensive Mycobacterium avium subspecies paratuberculosis Recombinant Protein Set

- (Peer Reviewed Journal)Bannantine, J.P., Stabel, J.R., Bayles, D.O., Geisbrecht, B. 2010. Characteristics of an Extensive Mycobacterium avium subspecies paratuberculosis Recombinant Protein Set. Protein Expression and Purification. 72(2):223-233.A Modified Multi-Locus Sequence Typing (MLST) Scheme for Haemophilus parasuis

- (Proceedings)Register, K.B., Mullins, M., Bayles, D.O. 2010. A Modified Multi-Locus Sequence Typing (MLST) Scheme for Haemophilus parasuis. In: Proceedings of the International Pig Veterinary Society Congress, July 18-21, 2010, Vancouver, Canada. p. 516.Identification and Molecular Cloning of a Novel Porcine Parvovirus

- (Peer Reviewed Journal)Cheung, A.K., Wu, G., Wang, D., Bayles, D.O., Lager, K.M., Vincent, A.L. 2010. Identification and Molecular Cloning of a Novel Porcine Parvovirus. Archives of Virology. 155(5):801-806.Emerging Pestiviruses

- (Abstract Only)Ridpath, J.F., Bayles, D.O., Neill, J.D., Kirkland, P.D., Finlaison, D.S., Frost, M.J. 2010. Emerging Pestiviruses [abstract]. UJNR Food & Agricultural Panel. p. 114-115.Studies of pathogenesis, transmission, heterologous protection, and genomics of four isolates of Haemophilus parasuis

- (Abstract Only)Brockmeier, S., Loving, C.L., Register, K.B., Nicholson, T.L., Bayles, D.O., Phillips, G.J. 2009. Studies of pathogenesis, transmission, heterologous protection, and genomics of four isolates of Haemophilus parasuis [abstract]. 2009 Conference of Research Workers in Diseases. Abstract No. 15, p. 118.Studies of Pathogenesis, Transmission, and Heterologous Protection of Four Isolates of Haemophilus parasuis in a Highly Susceptible Swine Population

- (Abstract Only)Brockmeier, S., Loving, C.L., Register, K.B., Nicholson, T.L., Bayles, D.O., Phillips, G.J. 2010. Studies of pathogenesis, transmission, and heterologous protection of four isolates of Haemophilus parasuis in a highly susceptible swine population [abstract]. 2010 American Association of Swine Veterinarians Annual Meeting. p. 127-129.Characterization and comparative analysis of the genes encoding Haemophilus parasuis outer membrane proteins P2 and P5

- (Peer Reviewed Journal)Mullins, M.A., Register, K.B., Bayles, D.O., Loving, C.L., Nicholson, T.L., Brockmeier, S.L., Dyer, D.W., Phillips, G.J. 2009. Characterization and Comparative Analysis of the Genes Encoding Haemophilus parasuis Outer Membrane Proteins P2 and P5. Journal of Bacteriology. 191(19):5988-6002.Identification and Comparative Analysis of Genes Encoding Outer Membrane Proteins P2 and P5 in Haemophilus parsuis

- (Abstract Only)Mullins, M.A., Register, K.B., Bayles, D.O., Loving, C.L., Nicholson, T.L., Brockmeier, S.L., Dyer, D.W., Phillips, G.J. 2009. Identification and comparative analysis of genes encoding outer membrane proteins P2 and P5 in Haemophilus parsuis [abstract]. 109th American Society for Microbiology General Meeting. Poster No. Z-034.The CsgA and Lpp proteins affect HEp-2 cell invasion, motility, and biofilm formation in a strain of Escherichia coli O157:H7

- (Peer Reviewed Journal)Uhlich, G.A., Gunther, N.W., Bayles, D.O., Mosier, D.A. 2009. The CsgA and Lpp proteins affect HEp-2 cell invasion, motility, and biofilm formation in a strain of Escherichia coli O157:H7. Infection and Immunity. 77(4):1543-1552.Analysis of foodborne bacteria by differential scanning calorimetry

- (Book / Chapter)Tunick, M.H., Novak, J.S., Bayles, D.O., Lee, J., Kaletunc, G. 2009. Analysis of foodborne bacteria by differential scanning calorimetry. Calorimetry in Food Processing.Proteomic changes in Escherichia coli when grown in fresh milk versus laboratory media

- (Peer Reviewed Journal)Lippolis, J.D., Bayles, D.O., Reinhardt, T.A. 2009. Proteomic changes in Escherichia coli when grown in fresh milk versus laboratory media. Journal of Proteome Research. 8(1):149-158.Identification of a Divided Genome for VSH-1, the Prophage-Like Gene Transfer Agent of Brachyspira hyodysenteriae

- (Peer Reviewed Journal)Stanton, T.B., Humphrey, S.B., Bayles, D.O., Zuerner, R.L. 2008. Identification of a Divided Genome for VSH-1, the Prophage-Like Gene Transfer Agent of Brachyspira hyodysenteriae. Journal of Bacteriology. 191(5):1719-1721.Comparison of Recognized Pestivirus Species with Two New Putative Species Represented by the Strains Pronghorn and Bungowannah

- (Abstract Only)Ridpath, J.F., Bayles, D.O., Neill, J.D., Kirkland, P.D., Finlaison, D.S., Frost, M.J. 2008. Comparison of Recognized Pestivirus Species with Two New Putative Species Represented by the Strains Pronghorn and Bungowannah [abstract]. 7th International Pestivirus Symposium, European Society for Veterinary Virology. p. 119.Osteopontin:  A Novel Cytokine Involved in the Regulation of Mycobacterium avium subsp. paratuberculosis Infection in Periparturient Dairy Cattle

- (Peer Reviewed Journal)Karcher, E.L., Bayles, D.O., Bannantine, J.P., Beitz, D.C., Stabel, J.R. 2008. Osteopontin:  A Novel Cytokine Involved in the Regulation of Mycobacterium avium subsp. paratuberculosis Infection in Periparturient Dairy Cattle. Journal of Dairy Science. 91(8):3079-3091.The CsgA and Lpp proteins affect motility and cell invasion in a strain of Escherichia coli O157:H7

- (Abstract Only)Uhlich, G.A., Bayles, D.O., Mosier, D.A. The CsgA and Lpp proteins affect motility and cell invasion in a strain of Escherichia coli O157:H7. Meeting Abstract.Early Antibody Response Against Mycobacterium avium subspecies paratuberculosis Antigens in Subclinical Cattle

- (Peer Reviewed Journal)Bannantine, J.P., Bayles, D.O., Waters, W.R., Palmer, M.V., Stabel, J.R., Paustian, M. 2008. Early Antibody Response Against Mycobacterium avium subspecies paratuberculosis Antigens in Subclinical Cattle. Proteome Science. 6:5.COMPARISON OF THE CECAL MICROBIOTA OF DOMESTIC AND WILD TURKEYS

- (Peer Reviewed Journal)Scupham, A.J., Patton, T.G., Bent, E., Bayles, D.O. 2008. Comparison of the cecal microbiota of domestic and wild turkeys. Microbial Ecology. 56(2):322-31. Available: http://www.springerlink.com/content/x2kr73p8l4837555/fulltext.html.The Lpp lipoprotein suppresses motility in a biofilm-forming strain of Escherichia coli O157:H7

- (Abstract Only)Uhlich, G.A., Bayles, D.O. 2007. The Lpp lipoprotein suppresses motility in a biofilm-forming strain of Escherichia coli O157:H7. International Association of Food Protection. Abstract. P5-15.POST-INFECTIOUS IRRITABLE BOWEL SYNDROME:  A LONG TERM CONSEQUENCE OF BACTERIAL GASTROENTERITIS

- (Review Article)Smith, J.L., Bayles, D.O. 2007. Post-infectious irritable bowel syndrome:  a long term consequence of bacterial gastroenteritis. Journal of Food Protection. Vol.70(7):1762-1769.Identification of Potential Cold-Related Genes in Listeria monocytogenes

- (Abstract Only)MUTATIONS IN CRP/FNR FAMILY OF REGULATORY GENES IN LISTERIA MONOCYTOGENES STRAIN F2365 DO NOT ALTER HEAT RESISTANCE AT 60 DEGREES C

- (Peer Reviewed Journal)Bayles, D.O., Uhlich, G.A. 2006. Mutations in crp/fnr family of regulatory genes in listeria monocytogenes strain f2365 do not alter heat resistance at 60 degrees c. Journal of Food Protection. 69:2758-2760.A COLD-SENSITIVE LISTERIA MONOCYTOGENES MUTANT HAS A TRANSPOSON INSERTION IN A GENE ENCODING A PUTATIVE MEMBRANE PROTEIN AND SHOWS ALTERED (P)PPGPP LEVELS

- (Peer Reviewed Journal)Liu, S., Bayles, D.O., Mason, T.M., Wilkinson, B.J. 2006. A cold-sensitive Listeria monocytogenes mutant has a transposon insertion in a gene encoding a putative membrane protein and shows altered (p)ppGpp levels. Applied and Environmental Microbiology. 72(6):3955-3959.NONLINEAR MODELING OF REAL-TIME REVERSE TRANSCRIPTION PCR DATA FROM MULTIPLE INDEPENDENT SAMPLES FOR STATISTICALLY VERIFIED DETERMINATION OF RELATIVE MRNA EXPRESSION CHANGES

- (Abstract Only)Bayles, D.O. 2006. Nonlinear modeling of real-time reverse transcription pcr data from multiple independent samples for statistically verified determination of relative mrna expression changes. Meeting Abstract. CD-ROM ISBN 1-55581-389-5THE CONTRIBUTION OF CYTOLETHAL DISTENDING TOXIN TO BACTERIAL PATHOGENESIS

- (Review Article)Smith, J.L., Bayles, D.O. 2006. The contribution of cytolethal distending toxin to bacterial pathogenesis. Critical Reviews in Microbiology. 32:227-248.THERMAL ANALYSIS OF RIBOSOMAL PROTEINS IN FOODBORNE BACTERIA

- (Peer Reviewed Journal)Tunick, M.H., Bayles, D.O., Novak, J.S. 2006. Thermal analysis of ribosomal proteins in foodborne bacteria. Journal of Thermal Analysis. V. 83; No.1.LISTERIA MONOCYTOGENES

- (Book / Chapter)Paoli, G., Bhunia, A., Bayles, D. 2005. Listeria monocytogenes. Foodborne Pathogens: Microbiology and Molecular Biology Reviews. Horizon Scientific Press, Norwich, UK. Chapter 15. p. 295-325.IMPROVED TECHNIQUE FOR ROBOTIC SPOTTING AND DETECTION OF LOW ABUNDANCE PROTEINS BY MALDI-TOF/TOF MASS SPECTROMETRY

- (Abstract Only)Nunez, A., Bayles, D.O., Fortis, L.L. 2005. Improved technique for robotic spotting and detection of low abundance proteins by maldi-tof/tof mass spectrometry. Meeting Abstract.IMPROVEMENTS IN ROBOTIC SAMPLE PREPARATION FOR THE IDENTIFICATION OF LOW ABUNDANCE BACTERIAL PROTEINS VIA MALDI MASS SPECTROMETRY

- (Abstract Only)Bayles, D.O. 2005. Improvements in robotic sample preparation for the identification of low abundance bacterial proteins via maldi mass spectrometry. 105 General Meeting of the American Association for Microbiology. CD ROM ISBN 1-55581-338-0. Paper NO. 0-018.MUTATIONS IN CRP/FNR FAMILY OF REGULATORY GENES IN LISTERIA MONOCYTOGENES DO NOT ALTER THE HEAT RESISTANCE OF THE PATHOGEN

- (Abstract Only)Bayles, D.O., Uhlich, G.A. 2005. Mutations in crp/fnr family of regulatory genes in listeria monocytogenes do not alter the heat resistance of the pathogen. Meeting Abstract. Poster P1-11. pg. 69.ANALYSIS OF FOODBORNE BACTERIA BY DIFFERENTIAL SCANNING CALORIMETRY

- (Abstract Only)Tunick, M.H., Bayles, D.O., Novak, J.S. 2005. Analysis of foodborne bacteria by differential scanning calorimetry. (abstract). IFT Annual Mtg. Paper No. 74-2. Available: http://ift.confex.com/ift2005/techprogram/paper 27433 htm.MOLECULAR APPROACHES FOR DETECTION, IDENTIFICATION, AND ANALYSIS OF FOOD-BORNE PATHOGENS

- (Book / Chapter)Fratamico, P.M., Bayles, D.O. 2005. Molecular approaches for detection, identification, and analysis of food-borne pathogens. Book Chapter. Foodborne Pathogens: Microbiology and Molecular Biology. Caister Academic Press, Norfolk, Virginia. pg. 1-13.PRECURSOR AND TEMPERATURE MODULATION OF FATTY ACID COMPOSITION AND GROWTH OF LISTERIA MONOCYTOGENES COLD-SENSITIVE MUTANTS WITH TRANSPOSON-INTERRUPTED BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE

- (Peer Reviewed Journal)Zhu, K., Bayles, D.O., Xiong, A., Jayaswal, R.K., Wilkinson, B.J. 2005. Precursor and temperature modulation of fatty acid composition and growth of listeria monocytogenes cold-sensitive mutants with transposon-interrupted branched-chain alpha-keto acid dehydrogenase. Microbiology. 151:615-623.EFFECTS OF SUSPENSION IN EMULSIFIED WIENER, OR INCUBATION IN WIENER PACKAGES, ON THE VIRULENCE OF L. MONOCYTOGENES SCOTT A IN INTRAGASTRICALLY INOCULATED A/J MICE

- (Peer Reviewed Journal)Faith, N.G., Tamplin, M.L., Bayles, D.O., Luchansky, J.B., Czuprynski, C.J. 2005. Effects of suspension in emulsified wiener, or incubation in wiener packages, on the virulence of L. monocytogenes Scott A in intragastrically inoculated A/J mice. Journal of Food Protection. v. 68. p. 597-601."OHMICS" AND CONTROL OF FOOD-BORNE PATHOGENS: EMPHASIS ON LISTERIA MONOCYTOGENES IN READY-TO-EAT MEATS

- (Proceedings)Uhlich, G.A., Bayles, D.O., Gilbreth, S.E., Call, J.E., Luchansky, J.B. 2004. "ohmics" and control of food-borne pathogens: emphasis on listeria monocytogenes in ready-to-eat meats. United States Japan Natural Resources Protein Panel. Food and Agriculture Panel. p. 397-401DSC ANALYSIS OF FOODBORNE BACTERIA

- (Proceedings)Tunick, M.H., Bayles, D.O., Novak, J.S. 2004. DSC Analysis of Foodborne Bacteria. NATAS 32nd Annual Conf. Proceedings. October 4-6, 2004. Williamsburg, VA. 2004 CDROM.WHOLE GENOME COMPARISONS OF SEROTYPE 4B AND 1/2A STRAINS OF THE FOOD-BORNE PATHOGEN LISTERIA MONOCYTOGENES REVEAL NEW INSIGHTS INTO THE CORE GENOME COMPONENTS OF THIS SPECIES

- (Peer Reviewed Journal)Nelson, K., Fouts, D., Mongodin, E., Fraser, C., Kathariou, S., Wonderling, L.D., Uhlich, G.A., Bayles, D.O., Luchansky, J.B. 2004. Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen listeria monocytogenes reveal new insights into the core genome components of this species. Proceedings Of The National Academy Of Sciences. 2004. Vol. 32. No. pg. 2386-2395.SURVIVAL OF LISTERIA MONOCYTOGENES STRAIN H7762 AND RESISTANCE TO SIMULATED GASTRIC FLUID FOLLOWING EXPOSURE TO FRANKFURTER EXUDATE

- (Peer Reviewed Journal)Wonderling, L.D., Bayles, D.O. 2004. Survival of listeria monocytogenes strain h7762 and resistance to simulated gastric fluid following exposure to frankfurter exudate. Journal of Food Protection. 67:1170-1176THE HTRA (DEGP) GENE OF LISTERIA MONOCYTOGENES 10403S, A SEROTYPE 1/2A     ISOLATE, IS ESSENTIAL FOR OPTIMAL GROWTH UNDER STRESS CONDITIONS

- (Peer Reviewed Journal)WONDERLING, L.D., BAYLES, D.O., WILKINSON, B.J. THE HTRA (DEGP) GENE OF LISTERIA MONOCYTOGENES 10403S, A SEROTYPE 1/2A     ISOLATE, IS ESSENTIAL FOR OPTIMAL GROWTH UNDER STRESS CONDITIONS. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2004. Vol. 4T7. pg. 1935-1943CHANGES IN THERMAL SENSITIVITY RESULTING FROM PH AND NUTRITIONAL SHIFTS OF ACID-ADAPTED AND NON-ACID-ADAPTED LISTERIA MONOCYTOGENES SCOTT A, A SEROTYPE 4B STRAIN

- (Peer Reviewed Journal)Bayles, D.O. 2004. Changes in thermal sensitivity resulting from ph and nutritional shifts of acid-adapted and non-acid-adapted listeria monocytogenes scott a, a serotype 4b strain. Journal of Food Protection. 67:316-321.CHANGES IN THERMAL SENSITIVITY RESULTING FROM PH AND NUTRITIONAL SHIFTS OF ACID ADAPTED AND NON-ACID ADAPTED SALMONELLA ENTERICA SEROVAR TYPHIMURIUM DT104

- (Peer Reviewed Journal)Bayles, D.O. Changes in thermal sensitivity resulting from ph and nutritional shifts of acid adapted and non-acid adapted salmonella enterica serovar typhimurium dt104. Journal of Food Protection.A METHOD FOR EVALUATING CHANGES TO UVM FOR IMPROVING THE GROWTH OF LISTERIA MONOCYTOGENES

- (Abstract Only)Bayles, D.O. 2003. A method for evaluating changes to uvm for improving the growth of listeria monocytogenes. Meeting Abstract. P074.ENVIRONMENTAL, HOST, AND BACTERIAL FACTORS THAT INFLUENCE THE PATHOGENESIS OF GASTROINTESTINAL LISTERIOSIS

- (Proceedings)Czuprynski, C.J., Faith, N.G., Tamplin, M.L., Uhlich, G.A., Wonderling, L.D., Bayles, D.O., Luchansky, J.B. 2003. Environmental, host, and bacterial factors that influence the pathogenesis of gastrointestinal listeriosis. Meeting Abstract. Part 8,Section 15, No.3.APPLICATION OF THE SAS ADX INTERFACE FOR OPTIMIZATION OF SINGLE AND MULTIPLEX PCR FOR REAL-TIME PCR DETECTION OF LISTERIA

- (Proceedings)Bayles, D.O. 2003. Application of the sas adx interface for optimization of single and multiplex pcr for real-time pcr detection of listeria. United States Japan Natural Resources Protein Panel 31st Annual Meeting Proceedings. p. H1-9.DNA MICROARRAYS:  GENE EXPRESSION APPLICATIONS

- (Other)Bayles, D.O. 2003. Dna microarrays:  gene expression applications. American Society for Microbiology. ASM News. 69(4):204.DEVELOPMENT OF A REAL-TIME MULTIPLEX PCR ASSAY FOR DETECTION OF LISTERIA MONOCYTOGENES AND COMPARISON OF DUAL-LABELED PROBES, MOLECULAR BEACONS, AND SYBRÂ GREEN I FOR DETECTION IN REAL TIME

- (Abstract Only)Bayles, D.O. 2003. Development of a real-time multiplex pcr assay for detection of listeria monocytogenes and comparison of dual-labeled probes, molecular beacons, and sybrâ green i for detection in real time. 103rd General Meeting of the American Association for Microbiology. Paper No. 057. p. 499.


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