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                    U.S. DEPARTMENT OF AGRICULTURE
 Soybean Genomics & Improvement Laboratory: Beltsville, MD
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ARS Home Northeast Area Beltsville, Maryland (BARC) Beltsville Agricultural Research Center Soybean Genomics & Improvement Laboratory People & Locations







Benjamin F Matthews

(Ben)
                        Soybean Genomics & Improvement Laboratory

                        




                        
                        Plant Physiologist
                        Phone: (301) 504-5730
                        
                        
                        Fax: (301) 504-5728(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            **Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Analysis of the genome sequence of Phomopsis longicolla: A fungal pathogen causing Phomopsis seed decay in soybean
                                                        

- (Peer Reviewed Journal)Li, S., Darwish, O., Alkharouf, N., Musungu, B.M., Matthews, B.F. 2017. Analysis of the genome sequence of Phomopsis longicolla: A fungal pathogen causing Phomopsis seed decay in soybean. BMC Genomics. 18:688. https://doi.org/10.1186/s12864-017-4075-x.Proteomic and metabolomic analysis of minimax and Williams 82 soybeans grown under two different conditions
                                                        

- (Peer Reviewed Journal)John, M., Khan, F., Luthria, D.L., Matthews, B.F., Garrett, W.M., Natarajan, S.S. 2017. proteomic and metabolomic analysis of minimax and Williams 82 soybeans grown under two different conditions. Journal of Food Biochemistry. 41:e12404. https://doi.org/10.1111/jfbc.12404.Agrobacterium rhizogenes - based transformation of soybean roots to form composite plants

- (Peer Reviewed Journal)Matthews, B.F., Youssef, R.M. 2016. Agrobacterium rhizogenes - based transformation of soybean roots to form composite plants. Bio-protocol. 6:e1708.Genome Sequencing and Analysis of Phomopsis longicolla Isolate MSPL 10-6 Causing Phomopsis Seed Decay in Soybean

- (Abstract Only)Li, S., Darwish, O., Matthews, B.F., Alkharouf, N. 2017. Genome Sequencing and Analysis of Phomopsis longicolla Isolate MSPL 10-6 Causing Phomopsis Seed Decay in Soybean. Annual International Plant & Animal Genome Conference. Plant & Animal Genome XXV, P0021. San Diego, CA. 14-18, January 2017. http://intlpag.org.A searchable database for the genome of Phomopsis longicolla (isolate MSPL 10-6)

- (Peer Reviewed Journal)Darwish, O., Li, S., May, Z., Matthews, B.F., Alkharouf, N. 2016. A searchable database for the genome of Phomopsis longicolla isolate MSPL 10-6. Bioinformation. 12(4):233-236.Genome-wide functional annotation of Phomopsis longicolla isolate MSPL 10-6

- (Peer Reviewed Journal)Darwish, O., Li, S., Matthews, B.F., Alkharouf, N. 2016. Genome-wide functional annotation of Phomopsis longicolla isolate MSPL 10-6. Genomics Data. 8:67-69.Soybean cyst nematode, Heterodera glycines, infection assay using soybean roots

- (Peer Reviewed Journal)Matthews, B.F., Youssef, R.M. 2016. Soybean cyst nematode, Heterodera glycines, infection assay using soybean roots. Bio-protocol. 6:e1707.Root transformation of Glycine max with responsive promoters to nematode infection

- (Peer Reviewed Journal)Alzohairy, A.M., Macdonald, M.H., Amer, R., Matthews, B.F. 2015. Root transformation of Glycine max with responsive promoters to nematode infection. Egyptian Journal of Genetics and Cytology. 44:149-164.Draft genome sequence of Phomopsis longicolla MSPL 10-6
                                                        

- (Peer Reviewed Journal)Li, S., Darwish, O., Alkharouf, N., Matthews, B.F., Ji, P., Domier, L.L., Zhang, N., Bluhm, B.H. 2015. Draft genome sequence of Phomopsis longicolla MSPL 10-6. Genomics Data. 3:55-56.Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction

- (Peer Reviewed Journal)Hosseini, P., Matthews, B.F. 2014. Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction. Biomed Central (BMC) Plant Biology. 14:300.SoyProLow: A protein database enriched in low abudndant soybean proteins

- (Peer Reviewed Journal)Natarajan, S.S., Tavakolan, M., Alkharour, N.W., Matthews, B.F. 2014. SoyProLow: A protein database enriched in low abudndant soybean proteins. Bioinformation. 10(9): 598-601.SCNProDB: A database for the identification of soybean cyst nematode proteins

- (Peer Reviewed Journal)Tavakolan, M., Alkharouf, N.W., Matthews, B.F., Natarajan, S.S. 2014. SCNProDB: A database for the identification of soybean cyst nematode proteins. Bioinformation. 10(9):400-405.Floral transcriptomes in woodland strawberry uncover developing receptacle and another gene networks

- (Peer Reviewed Journal)Hollender, C.A., Kang, C., Darwish, O., Geretz, A., Matthews, B.F., Slovin, J.P., Alkharouf, N., Liu, Z. 2014. Floral transcriptomes in woodland strawberry uncover developing receptacle and another gene networks. Plant Physiology. DOI:10.1104/pp.114.237529.Ectopic expression of Arabidopsis genes encoding salicylic acid- and jasmonic acid-related proteins confers partial resistance to soybean cyst nematode (Heterodera glycines) in transgenic soybean roots

- (Peer Reviewed Journal)Matthews, B.F., Beard, H.S., Brewer, E.P., Kabir, S., Macdonald, M.H., Youssef, R.M. 2014. Ectopic expression of Arabidopsis genes encoding salicylic acid- and jasmonic acid-related proteins confers partial resistance to soybean cyst nematode (Heterodera glycines) in transgenic soybean roots. Biomed Central (BMC) Plant Biology. 14:96.Manipulation of two alpha-endo-beta-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots

- (Peer Reviewed Journal)Woo, M., Beard, H.S., Macdonald, M.H., Brewer, E.P., Youssef, R., Kim, H., Matthews, B.F. 2014. Manipulation of two alpha-endo-beta-1,4-glucanase genes, AtCel6 and GmCel7, reduces susceptibility to Heterodera glycines in soybean roots. Molecular Plant Pathology. DOI:15.10.1111/mpp.12157.Overexpression of four Arabidopsis thaliana NHLgenes in soybean (Glycine max) roots and their effect over resistance to the soybean cyst nematode (Heterodera glycines)

- (Peer Reviewed Journal)Maldonado, A., Macdonald, M.H., Brewer, E.P., Beard, H.S., Youssef, R.M., Matthews, B.F. 2014. Overexpression of four Arabidopsis thaliana NHLgenes in soybean (Glycine max) roots and their effect over resistance to the soybean cyst nematode (Heterodera glycines). Physiological and Molecular Plant Pathology. 86:1-10.Modification of the expression of two NPR1 suppressors SNC1 and SNI1, in coybean (Glycine max) confers partial resistance to the soybean cyst nematode (Heterodera glycines)

- (Peer Reviewed Journal)Maldonado, A., Macdonald, M.H., Youssef, R.M., Brewer, E.P., Beard, H.S., Matthews, B.F. 2014. Modification of the expression of two NPR1 suppressors SNC1 and SNI1, in coybean (Glycine max) confers partial resistance to the soybean cyst nematode (Heterodera glycines). Functional Plant Biology. 41(7):714-726.Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita)

- (Peer Reviewed Journal)Youssef, R.M., Matthews, B.F. 2013. Expression of Arabidopsis genes AtNPR1 and AtTGA2 in transgenic soybean roots of composite plants confers resistance to root-knot nematode (Meloidogyne incognita). International Journal of Current Biotechnology. 1(10):15-25.Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

- (Peer Reviewed Journal)Tremblay, A., Hosseini, P., Li, S., Alkharouf, N.W., Matthews, B.F. 2013. Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing. Biomed Central (BMC) Genomics. 14:614.Proteomics: an efficient tool to analyze nematode proteins

- (Peer Reviewed Journal)Matthews, B.F., Natarajan, S.S. 2013. Proteomics: an efficient tool to analyze nematode proteins. Journal of Plant Production Science. 3(2):61-64.Dynamic proteome analysis of roots of soybean compatible and incompatible to Heterodera glycines

- (Peer Reviewed Journal)Chen, X., Garrett, W.M., Macdonald, M.H., Khan, F.H., Matthews, B.F., Natarajan, S.S. 2013. Dynamic proteome analysis of roots of soybean compatible and incompatible to Heterodera glycines. Current Protemics. 10:278-291.Gene expression study of phakopsoara pachyrzhiz-glycine max in interaction in susceptible plant using next generation sequencing

- (Peer Reviewed Journal)Tremblay, A., Hosseini, P., Alkharouf, N.W., Li, S., Matthews, B.F. 2011. Gene expression study of phakopsoara pachyrzhiz-glycine max in interaction in susceptible plant using next generation sequencing. Sequencing. doi:10.1155/2011/827250.The expression of a naturally occuriing truncated allele of an alpha-SNAP gene suppresses plant parasitic nematode infection

- (Peer Reviewed Journal)Matsye, P.D., Lawrence, G.W., Youssef, R., Kim, K., Matthews, B.F., Klink, V.P. 2012. Functional analysis of a naturally occurring mutant of an alpha soluble NSF attachment protein gene residing within the RHG1 locus. Plant Molecular Biology. 79:1-25.Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing
                                                        

- (Peer Reviewed Journal)Tremblay, A., Hosseini, P., Alkharouf, N.W., Li, S., Matthews, B.F. 2011. Gene expression in leaves of susceptible Glycine max during infection with Phakopsora pachyrhizi using Next-Generation sequencing. Sequencing. doi:10.1155/2011/827250.Evaluation of protein extraction methods suitable for two-dimensional gel electrophoresis of the soybean cyst nematode (Heterodera glycines)

- (Peer Reviewed Journal)Chen, X., Macdonald, M.H., Garrett, W.M., Matthews, B.F., Natarajan, S.S. 2011. Evaluation of protein extraction methods suitable for two-dimensional gel electrophoresis of the soybean cyst nematode (Heterodera glycines). Analytical Biochemistry. 41(2):240-247.Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines

- (Peer Reviewed Journal)Xi, C., Macdonald, M.H., Khan, F.H., Garrett, W.M., Matthews, B.F., Natarajan, S.S. 2011. Two-dimensional proteome reference maps for the soybean cyst nematode Heterodera glycines. Proteomics. 11(24):4742-4746.Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves

- (Peer Reviewed Journal)Tremblay, A., Hosseini, P., Li, S., Alkharouf, N., Matthews, B.F. 2011. Identification of genes expressed by Phakopsora pachyrhizi, the pathogen causing soybean rust, at a late stage of infection of susceptible soybean leaves. Plant Pathology. 60:1-14.Mapping cell fate decisions that occur during soybean defense responses

- (Peer Reviewed Journal)Matsye, P.D., Kumar, R., Hosseini, P., Jones, C.M., Alkharouf, N.W., Matthews, B.F., Klink, V.P. 2011. Mapping cell fate decisions that occur during soybean defense responses. Plant Molecular Biology. 77:513-528.Proteomic analysis of soybean cyst nematode

- (Peer Reviewed Journal)Natarajan, S.S., Matthews, B.F. 2011. Proteomic analysis of soybean cyst nematode. Journal of Plant Protection Research. 2(2):77-79.Using Illumina mRNA-Sequencing to understand Glycine max-Phakopsora pachyhrizi interaction

- (Abstract Only)Using a next generation sequencing strategy to understand Glycine max-Phakopsora pachyhrizi interaction

- (Abstract Only)Discovery of new soybean and soybean rust genes using next generation sequencing

- (Abstract Only)Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.)

- (Peer Reviewed Journal)Lee, S., Kim, B., Kwon, T., Jeong, M., Park, S., Lee, J., Byun, M., Kwon, H., Matthews, B.F., Hong, C., Park, S. 2011. Overexpression of the MAP kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.). Journal of Bioscience and Bioengineering. 36:139-151.Differences in gene expression occurring between the rapid and potent localized resistant soybean cv Peking as compared to PI 88788 in response to rust

- (Peer Reviewed Journal)Klink, V.P., Hosseini, P., Matsye, P.D., Alkharouf, N.W., Matthews, B.F. 2010. Differences in gene expression occurring between the rapid and potent localized resistant soybean cv Peking as compared to PI 88788 in response to rust. Plant Molecular Biology. 75:141-165.Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402)

- (Peer Reviewed Journal)Klink, V.P., Hosseini, P., Matsye, P.D., Alkharouf, N.W., Matthews, B.F. 2012. Differences in gene expression amplitude overlie a conserved transcriptomic program occurring between the rapid and potent localized resistant reaction at the syncytium of the Glycine max genotype Peking (PI 548402). Plant Molecular Biology. 75:141-165.An efficient annotation and gene expression derivation tool for Illumina Solexa datasets

- (Peer Reviewed Journal)Hosseini, P., Tremblay, A., Matthews, B.F., Alkharouf, N. 2010. An efficient annotation and gene expression derivation tool for Illumina Solexa datasets. Biomed Central (BMC) Genomics. 3:183.Transcriptome analysis of a compatible response by Glycine max to Phakopsora pachyrhizi infection

- (Peer Reviewed Journal)Tremblay, A., Hosseini, P., Alkharouf, N., Li, S., Matthews, B.F. 2010. Transcriptome Analysis of a Compatible Response by Glycine max to Phakopsora pachyrhizi Infection. Plant Science. 179:183-193.Microarray detection calls as a means to compare transcripts within syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines)

- (Peer Reviewed Journal)Klink, V.P., Overall, C.C., Alkharouf, N.W., Macdonald, M.H., Matthews, B.F. 2010. Microarray detection calls as a means to compare transcripts within syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines). Journal of Biomedicine and Biotechnology. 2010(2010):Article ID 491217 30 pages.Post-transcriptional gene silencing of root knot-nematode in transformed soybean roots

- (Peer Reviewed Journal)Ibrahim, H., Alkharouf, N., Meyer, S.L., Sanad, M., El-Din, A., Hussein, E., Matthews, B.F. 2010. Post-transcriptional gene silencing of root knot-nematode in transformed soybean roots. Experimental Parasitology. 127:90-99.Differing responses to carbon dioxide enrichment by a dwarf and a normal-sized soybean cultivar may depend on sink capacity

- (Peer Reviewed Journal)Sicher  Jr, R.C., Bunce, J.A., Matthews, B.F. 2010. Differing responses to carbon dioxide enrichment by a dwarf and a normal-sized soybean cultivar may depend on sink capacity. Canadian Journal of Plant Science. 90:257-264.Syncytium gene expression in Glycine max [PI88788} roots undergoing a resistant reaction of the parasitic nematode Heterodera glycines

- (Peer Reviewed Journal)Klink, V., Houssein, P., Matsye, P., Alkharouf, N., Matthews, B.F. 2010. An expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 88788 undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Physiology and Biochemistry. 48:176-193.A gene expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode)

- (Peer Reviewed Journal)Klink, V., Housseini, P., Matsye, P., Alkharouf, N., Matthews, B.F. 2009. A gene expression analysis of syncytia isolated from the roots of the Glycine max (soybean) genotype PI 548402 (Peking) undergoing a resistant reaction after infection by Heterodera glycines (soybean cyst nematode). Plant Molecular Biology. 71:525-567.Emerging approaches to broaden the resistance of soybean to the soybean cyst nematode

- (Peer Reviewed Journal)Klink, V., Matthews, B.F. 2009. Emerging approaches to broaden the resistance of soybean to the soybean cyst nematode. Plant Physiology. 151:1017-1022.Laser capture microdissection and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust

- (Peer Reviewed Journal)Tremblay, A., Li, S., Scheffler, B.E., Matthews, B.F. 2009. Laser capture microdissection (LCM) and expressed sequence tag analysis of uredinia formed by Phakopsora pachyrhizi, the causal agent of Asian soybean rust. Physiological and Molecular Plant Pathology. 73(6):163-174.Laser capture microdissection, a new technique to collect specific cells

- (Other)Tremblay, A., Matthews, B.F. 2009. Laser capture microdissection, a new technique to collect specific cells. Extension Magazine. 4:4Population-specific gene expression in the pathogenic nematode Hederodera glycines  exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of Glycine max.

- (Peer Reviewed Journal)Klink, V.P., Hosseini, P., Macdonald, M.H., Alkharouf, N.W., Matthews, B.F. 2009. Population-specific gene expression in the pathogenic nematode Hederodera glycines  exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of Glycine max. Biomed Central (BMC) Genomics. 10:111. http://www.biomedcentral.com/1471-2164/10/111.Protease inhibitor expression in soybean roots exhibiting susceptible and resistance reactions to soybean cyst nematode

- (Peer Reviewed Journal)Nahed, R., Macdonald, M.H., Matthews, B.F. 2008. Protease inhibitor expression in soybean roots exhibiting susceptible and resistance reactions to soybean cyst nematode. Journal of Nematology. 40:138-146.Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases

- (Peer Reviewed Journal)Choi, J.J., Alkharouf, N.W., Schneider, K., Matthews, B.F., Frederick, R.D. 2008. Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases. Functional and Integrative Genomics. 8:341-359Understanding Cold Tolerance in Blueberry Using EST Libraries, cDNA Microarrays, and Subtractive Hybridization

- (Peer Reviewed Journal)Rowland, L.J., Dhanaraj, A.L., Naik, D., Alkharouf, N., Matthews, B.F., Arora, R. 2008. Understanding Cold Tolerance in Blueberry Using EST Libraries, cDNA Microarrays, and Subtractive Hybridization. HortScience. 43:1975-1981.MiniMax, a new diminutive Glycine max genotype with a rapid life cycle, embryonic potential and transformation capabilities

- (Peer Reviewed Journal)Klink, V.P., Macdonald, M.H., Martins, V., Park, S., Kim, K., Baek, S., Matthews, B.F. 2007. MiniMax, a new diminutive Glycine max genotype with a rapid life cycle, embryonic potential and transformation capabilities. Plant Cell Tissue And Organ Culture. 92:183-195.Glycine max (soybean) roots and syncytia isolated by laser capture microdissection (LCM) exhibit differential gene expression

- (Peer Reviewed Journal)Klink, V.P., Matthews, B.F. 2007. Glycine max (soybean) roots and syncytia isolated by laser capture microdissection (LCM) exhibit differential gene expression. Plant Signaling and Behavior. 3(2):105-107.A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection

- (Peer Reviewed Journal)Klink, V.P., Overall, C., Macdonald, M.H., Matthews, B.F. 2007. A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection. Planta. 226:1423-1447.Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean roots infected by soybean cyst nematode (Heterodera glycines)

- (Peer Reviewed Journal)Klink, V.P., Overall, C.C., Aklharouf, N.W., Macdonald, M.H., Matthews, B.F. 2007. Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean roots infected by soybean cyst nematode (Heterodera glycines). Planta. 226:1389-1409.IDENTIFICATION OF SOYBEAN CYST NEMATODE, HETERODERA GLYCINES, DNA SEQUENCES WITH HIGH SIMILARITY TO THOSE OF CAENORHABDITIS ELEGANS WITH MUTANT LETHAL PHENOTYPES

- (Peer Reviewed Journal)Alkharouf, N., Klink, V.P., Matthews, B.F. 2007. Identification of soybean cyst nematode, heterodera glycines, dna sequences with high similarity to those of caenorhabditis elegans with mutant lethal phenotypes. Experimental Parasitology. 115:247-258.Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max

- (Peer Reviewed Journal)Klink, V.P., Matthews, B.F. 2007. Developing a systems biology approach to study disease progression caused by Heterodera glycines in Glycine max. Gene Regulation and Systems Biology. 2:1-17.Understanding Cold Tolerance in Blueberry Using EST Libraries and cDNA Microarrays and Subtractive Hybridization

- (Abstract Only)Rowland, L.J., Dhanaraj, A.L., Naik, D., Alkharouf, N., Matthews, B.F., Arora, R. 2007. Understanding Cold Tolerance in Blueberry Using EST Libraries and cDNA Microarrays and Subtractive Hybridization. HortScience, v. 42, p. 822BBGD: AN ONLINE DATABASE FOR BLUEBERRY GENOMIC DATA.

- (Peer Reviewed Journal)Alkharouf, N.W., Dhanaraj, A.L., Naik, D., Overall, C., Matthews, B.F., Rowland, L.J. 2007. Bbgd: an online database for blueberry genomic data.. Biomed Central (BMC) Plant Biology.  7:05.A decline in transcript abundance for Heterodera glycines homolog Caenorhabditis elegans uncoordinated genes accompanies its sedentary parasitic phase.

- (Peer Reviewed Journal)Martins, V., Klink, V.P., Alkharouf, N., Macdonald, M.H., Matthews, B.F. 2006. A decline in transcript abundance for Heterodera glycines homolog Caenorhabditis elegans uncoordinated genes accompanies its sedentary parasitic phase.. BioMed Central Developmental Biology. 7(35):1-11.GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY UNDER FIELD AND COLD ROOM CONDITIONS USING CDNA MICROARRAYS

- (Peer Reviewed Journal)Dhanaraj, A.L., Alfharouf, N.W., Beard, H.S., Chouikha, I.B., Matthews, B.F., Wei, H., Arora, R., Rowland, L.J. 2006. Gene expression profiles during cold acclimation in blueberry under field and cold room conditions using cdna microarrays. Planta.  DOI10.1007/s00425-006-0382-1.  225:735-751.BROADENING RESISTANCE OF SOYBEAN TO THE SOYBEAN CYST NEMATODE USING BIOTECHNOLOGY

- (Proceedings)Matthews, B.F., Klink, V.P., Alkharouf, N. 2006. Broadening resistance of soybean to the soybean cyst nematode using biotechnology. Meeting Proceedings. 3rd Congreso de Soja del Mercousur, June 24, 2006 - July 4, 2006, Rosairo, Argentina. p. 6-9.ISOLATION OF A PATHOGENESIS RELATED GENE (PR GENE) USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA

- (Abstract Only)Klink, V.P., Macdonald, M.H., Matthews, B.F. 2006. Isolation of a pathogenesis related gene (pr gene) using laser capture microdissection of glycine max (soybean) syncytia [abstract]. BARC Poster Day. Paper No. 24.MICROARRAY ANALYSIS OF GENES EXPRESSED IN RPPL-MEDIATED RESISTANCE TO ASIAN SOYBEAN RUST

- (Abstract Only)Schneider, K., Choi, J.J., Alkharouf, N.W., Lum, N.L., Munroe, D.J., Matthews, B.F., Frederick, R.D. 2006. Microarray analysis of genes expressed in rppl-mediated resistance to asian soybean rust. American Phytopathological Society 96:S104GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY USING CDNA MICROARRAYS.

- (Proceedings)Dhanaraj, A.L., Alkharouf, N., Beard, H.S., Chouikha, I.B., Matthews, B.F., Wei, H., Arora, R., Rowland, L.J. 2006. Gene expression profiles during cold acclimation in blueberry using cdna microarrays.. Proceedings from "Functional Genomics of Model Organisms to Crop Plants for Global Health". April 3-5, 2006, Washington, D.C. p.39.ISOLATION OF GENES USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA FORMED BY THE PLANT PATHOGEN HETERODERA GLYCINES, (SOYBEAN CYST NEMATODE).

- (Abstract Only)Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2005. Isolation of genes using laser capture microdissection of glycine max (soybean) syncytia formed by the plant pathogen heterodera glycines, (soybean cyst nematode) [abstract]. Cambridge Healthtech Institute Laser Capture Microdissection: Cutting Edge Applications. Paper No. 219.ISOLATION AND CHARACTERIZATION OF THE SOYBEAN CYST NEMATODE (HETERODERA GLYCINES) HOMOLOG OF CAENORHABDITIS ELEGANS UNC-97 GENE.

- (Abstract Only)Martins, V., Klink, V.P., Alkharouf, N., Macdonald, M.H., Matthews, B.F. 2005. Isolation and characterization of the soybean cyst nematode (heterodera glycines) homolog of caenorhabditis elegans unc-97 gene [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. p. 13. .IDENTIFICATION OF SOYBEAN CYST NEMATODE LETHAL GENES USING COMPUTATIONAL METHODS

- (Abstract Only)Alkharouf, N., Klink, V.P., Matthews, B.F. 2005. Identification of soybean cyst nematode lethal genes using computational methods [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. Paper No. 24.GENE EXPRESSION CHANGES IN SOYBEAN AFTER INFECTION WITH SOYBEAN RUST (PHAKOPSORA PACHYRHIZI).

- (Abstract Only)Alkharouf, N., Choi, J.J., Frederick, R.D., Matthews, B.F. 2005. Gene expression changes in soybean after infection with soybean rust (phakopsora pachyrhizi) [abstract]. BARC Poster Day. Paper No. 09.ISOLATION OF AN AQUAPORIN (GMPIP2,2) USING LASER CAPTURE MICRODISSECTION OF GLYCINE MAX (SOYBEAN) SYNCYTIA FORMED BY THE PLANT PATHOGEN HETERODERA GLYCINES, (SOYBEAN CYST NEMATODE).

- (Abstract Only)Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2005. Isolation of an aquaporin (gmpip2,2) using laser capture microdissection of glycine max (soybean) syncytia formed by the plant pathogen heterodera glycines, (soybean cyst nematode) [abstract]. BARC Poster Day. Paper No. 17.MONITORING GENE EXPRESSION PROFILES DURING COLD ACCLIMATION IN BLUEBERRY UNDER FIELD AND COLD ROOM CONDITIONS USING CDNA MICROARRAYS

- (Abstract Only)Dhanaraj, A., Alkharouf, N., Beard, H.S., Ben Chouikha, I., Matthews, B.F., Rowland, L.J. 2005. Monitoring gene expression profiles during cold acclimation in blueberry under field and cold room conditions using cdna microarrays. In Vitro Biology.  41:38-A.GENOME POLYMORPHISM IDENTIFIES A SUBTILISIN-LIKE PROTEASE NEAR THE RHG4 LOCUS IN SOYBEAN

- (Peer Reviewed Journal)Nelsen, N., Li, Z., Warner, A., Matthews, B.F. 2004. Genome polymorphism identifies a subtilisin-like protease near the rhg4 locus in soybean. Crop Science 44: 264-273.PRELIMINARY STUDIES ON MICROARRAY ANALYSIS OF GENE EXPRESSION DURING COLD ACCLIMATION IN BLUEBERRY.

- (Abstract Only)Dhanaraj, A., Alkharouf, N.W., Beard, H.S., Ben Chouikha, I., Matthews, B.F., Rowland, L.J. 2004. Preliminary studies on microarray analysis of gene expression during cold acclimation in blueberry.. Meeting Abstract.  p. 35MOLECULAR CHARACTERIZATION OF  A SOYBEAN CYST NEMATODE HOMOLOGY OF UNC-87.

- (Peer Reviewed Journal)Matthews, B.F., Pilitt, K.L., Klink, V.P. 2004. Molecular characterization of  a soybean cyst nematode homology of unc-87. Journal of Nematology 36: 457-465.RESISTANCE MECHANISMS IN SOYBEAN: GENE EXPRESSION PROFILE AT AN EARLY STAGE OF SOYBEAN CYST NEMATODE INVASION

- (Peer Reviewed Journal)Khan, R., Alkharouf, N., Beard, H.S., Knap, H., Meyer, S.L., Chouikha, I., Greffenstette, J., Matthews, B.F. 2004. Resistance mechanisms in soybean: gene expression profile at an early stage of soybean cyst nematode invasion. J. Nematol. 36: 241-248.IDENTIFICATION OF RESISTANT GENES AND PATHWAYS IN SOYBEAN AGAINST THE CYST NEMATODE USING BIOINFORMATICS AND DATA MINING TOOLS

- (Abstract Only)Alkharouf, N., Matthews, B.F. 2004. Identification of resistant genes and pathways in soybean against the cyst nematode using bioinformatics and data mining tools [abstract]. BARC Poster Day. Abstract #06.LASER CAPTURE MICROSCOPY ISOLATION OF SYNCYTIAL CELLS FROM HETERODERA GLYCINES FEEDING SITES AND EST ANALYSIS

- (Abstract Only)Klink, V.P., Macdonald, M.H., Alkharouf, N., Matthews, B.F. 2004. Laser capture microscopy isolation of syncytial cells from heterodera glycines feeding sites and est analysis. Meeting Proceedings. Cambridge Healthtech Institute. P.6.SGMD: THE SOYBEAN GENOMICS AND MICROARRAY DATABASE.

- (Peer Reviewed Journal)Alkharouf, N., Matthews, B.F. 2003. Sgmd: the soybean genomics and microarray database.. Nucleic Acids Research. 32:D398-D400.ANALYSIS OF EXPRESSED SEQUENCE TAGS FROM ROOTS OF RESISTATNT SOYBEAN INFECTED BY THE SOYBEAN CYST NEMATODE.

- (Abstract Only)Alkharouf, N., Khan, R., Matthews, B.F. 2003. Analysis of expressed sequence tags from roots of resistatnt soybean infected by the soybean cyst nematode [abstract]. Mid Atlantic Plant Molecular Biology Society Conference . p. 30.ALTERATIONS OF GENE EXPRESSION AND METABOLITE LEVELS IN SOYBEAN ROOTS DURING INVASION BY THE SOYBEAN CYST NEMATODE

- (Abstract Only)Matthews, B.F., Khan, R., Alkharouf, N., Sumner, L.W. 2003. Alterations of gene expression and metabolite levels in soybean roots during invasion by the soybean cyst nematode [abstract]. Mid Atlantic Plant Molecular Biology Society Conference. p.13.MOLECULAR CHARACTERIZATION OF ARGININE KINASES IN THE SOYBEAN CYST NEMATODE (HETERODERA GLYCINES).

- (Peer Reviewed Journal)Matthews, B.F., Tucker, M.L., Macdonald, M.H., Thai, V.K. 2003. Molecular characterization of arginine kinases in the soybean cyst nematode (heterodera glycines).. Journal of Nematology. 35:252-258.MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4

- (Abstract Only)MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4

- (Abstract Only)Hofmann, N.E., Arelli, P.R., Matthews, B.F., Quigley, C.V., Cregan, P.B. 2002. Molecular beacons to select for scn resistance at rhg1 and rhg4. Biennial Conference on Molecular and Cellular Biology of the Soybean. P. 211.ASCARIS SUUM: CDNA MICROARRAY ANALYSIS OF 4TH STAGE LARVAE (L4) DURING SELF-CURE FROM THE INTESTINE

- (Peer Reviewed Journal)Morimoto, M., Zarlenga, D.S., Beard, H.S., Alkharouf, N., Matthews, B.F., Urban Jr, J.F. 2003. Ascaris suum: cdna microarray analysis of 4th stage larvae (l4) during self-cure from the intestine. Experimental Parasitology.  104:113-121 (2003)MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN ROOTS

- (Abstract Only)ANALYSIS OF DNA MICROARRAY DATA

- (Abstract Only)FUNCTIONAL ANNOTATION OF THE GENOMIC REGION SURROUNDING THE RHG4 LOCUS IN  SOYBEAN PI 437.654

- (Abstract Only)MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN RESISTANT OR SUSCEPTIBLE TO SOYBEAN CYST NEMATODE

- (Abstract Only)REGULATION OF PHYTOCHEMICALS BY MOLECULAR TECHNIQUES

- (Book / Chapter)MAP BASED CLONING OF A SOYBEAN CYSTNEMATODE RESISTANCE GENE

- (Abstract Only)COMPARISON OF RESISTANT AND SUSCEPTIBLE SOYBEAN GENOMES

- (Peer Reviewed Journal)STRATEGY FOR ISOLATION OF A SOYBEAN GENE

- (Abstract Only)GENOMIC EXPRESSION PROFILING IN SOYBEAN PLANTS

- (Abstract Only)SMGD: THE SOYBEAN GENOMICS AND MICROARRAY DATABASE

- (Abstract Only)MICROARRAY ANALYSIS OF GENE EXPRESSION IN SOYBEAN PLANTS

- (Abstract Only)A PHYSICAL MAP OF A GENE-DENSE REGION IN SOYBEAN

- (Peer Reviewed Journal)GENE EXPRESSION PROFILING IN SOYBEAN PLANTS RESISTANT OR SUSCEPTIBLE TO    SOYBEAN CYST NEMATODE (SCN) USING MICROARRAY ANALYSIS.

- (Abstract Only)MICROARRAYS: APPLICATION TO SOYBEAN GENE EXPRESSION DURING SOYBEAN         CYST NEMATODE INVASION

- (Book / Chapter)MAP-BASED CLONING OF A SOYBEAN CYST NEMATODE RESISTANCE GENE

- (Abstract Only)USE OF FTA FOR RAPID PCR SCREENING OF PLANT SAMPLES

- (Abstract Only)DETECTION OF PLANT GENES USING A RAPID, NON-ORGANIC DNA ISOLATION METHOD

- (Peer Reviewed Journal)GENES EXPRESSED BY SOYBEAN IN RESPONSE TO THE SOYBEAN CYST NEMATODE

- (Abstract Only)INCORPORATION OF SEQUENCED CDNA AND GENOMIC MARKERS INTO THE SOYBEAN MAP

- (Peer Reviewed Journal)EXPRESSION OF GENENS INVOLVED IN THE RESISTANCE OF SOYBEAN TO SCN

- (Abstract Only)GENOMIC EXPRESSION PROFILING IN SOYBEAN PLANTS RESISTANT OR SUSCEPTIBLE    TO SOYBEAN CYST NEMATODE (SCN)

- (Abstract Only)COMPARISON OF RESISTANT AND SUSCEPTIBLE GENOMES NEAR A SOYBEAN CYST        NEMATODE RESISTANCE GENE

- (Abstract Only)CHARACTERIZATION OF EST IN A SOYBEAN AMPLIFIED OF CDNA LIBRARY AND A       SOYBEAN NORMALIZED CDNA LIBRARY

- (Proceedings)PLANT TRANSFORMATION BY GENE TRANSFER INTO POLLEN

- (Trade Journal)IDENTIFICATION AND EXPRESSION OF A CDNA ENCODING CYSTATHIONINE GAMMA       SYNTHOSE

- (Peer Reviewed Journal)ISOLATION AND CHARACTERIZATION OF A CDNA ENCODING A MONOFUNCTIONAL         ASPARTOKINASE FROM SOYBEAN

- (Peer Reviewed Journal)USING CDNA ARRAYS TO EXAMINE THE RESPONSE OF SOYBEAN TO SCN

- (Trade Journal)EXAMINATION OF THE TRANSCRIPTION OF A MONOFUNCTIONAL ASPARTOKINASE IN      SOYBEAN SEEDLINGS

- (Trade Journal)DETECTION OF PLANT GENES USING A RAPID, NON-ORGANIC GENOMIC DNA ISOLATION  METHOD

- (Abstract Only)DETECTION OF PLANT GENES USING A RAPID METHOD

- (Abstract Only)CDNA ARRAY REPRESENTING GENES EXPRESSED BY SOYBEAN

- (Abstract Only)TARGETED ISOLATION OF SIMPLE SEQUENCE REPEAT MARKERS THROUGH THE USE OF    BACTERIAL ARTIFICIAL CHROMOSOMES

- (Peer Reviewed Journal)DETECTION OF A CASCADE OF DIFFERENTIALLY EXPRESSED GENES

- (Peer Reviewed Journal)PURIFICATION AND PRELIMINARY CHARACTERIZATION OF THE SOYBEAN GLYOXYSOMAL   ASPARTATE AMINOTRANSFERASE ISOZYME

- (Peer Reviewed Journal)GENETIC MAPPING OF THE SOYBEAN GENE RJ4, CONDITIONING NODULATION           RESTRICTION WITH BRADYRHIZOBIUM ELKANII, A CHLOROSIS-INDUCING              MICROSYMBIONT, WITH MOLECULAR MARKER LOCI

- (Peer Reviewed Journal)CLONING & EXPRESSION OF TWO SOYBEAN GENES ENCODING SIMILAR ASPARTOKINASE-  HOMESERINE DEHYDROGENASE ISOFORMS

- (Peer Reviewed Journal)DIFFERENTIALLY EXPRESSED GENES OF SOYBEAN IN RESPONSE TO INVASION BY THE   THE SOYBEAN CYST NEMATODE

- (Abstract Only)DIFFERENTIALLY EXPRESSED GENES INDUCED IN RESISTANT SOYBEAN PLANTS IN      RESPONSE TO SOYBEAN CYST NEMATODE, HEDERODERA GLYCINES, INVASION

- (Abstract Only)MOLECULAR MARKERS FOR RESISTANCE TO MULTIPLE RACES OF SOYBEAN CYST NEMATODE(SCN) AS APPLIED TO ADVANCED GERMPLASM

- (Peer Reviewed Journal)PCR MARKERS RESIDING CLOSE TO THE RHG4 LOCUS CONFERRING RESISTANCE TO      SOYBEAN CYST NEMATHODE RACE 3 ON LINKAGE GROUP A OF SOYBEAN

- (Peer Reviewed Journal)LYSINE THREONINE AND METHIONINE BIOSYNTHESIS

- (Book / Chapter)RAPID ASSAY OF MOLECULAR MARKERS CLOSELY LINKED TO THE RHG4 LOCUS IMPARTINGRESISTANCE TO SOYBEAN CYST NEMATODE RACE 3

- (Peer Reviewed Journal)DIFFERENTIAL GENE EXPRESSION IN RESPONSE TO SOYBEAN CYST NEMATODE,         HETERODERA GLYCINES, INFECTION

- (Trade Journal)
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