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                    U.S. DEPARTMENT OF AGRICULTURE
 Animal Genomics and Improvement Laboratory: Beltsville, MD
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ARS Home Northeast Area Beltsville, Maryland (BARC) Beltsville Agricultural Research Center Animal Genomics and Improvement Laboratory People & Locations







Ransom L Baldwin

(Randy)
                        Animal Genomics and Improvement Laboratory

                        




                        
                        Research Leader
                        Phone: (301) 504-8964
                        
                        
                        Fax: (301) 504-8414(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsImproving Dairy Cow Feed Efficiency and Environmental Sustainability Using Genomics and Novel Technologies to Identify Physiological Contributions and Adaptations
                                                    In-House Appropriated
                                                                    (D)Accession Number: 442582Characterizing the NAD+ Metabolome of Liver, Blood, and Milk in Dairy Cows Transitioning from Gestation to Lactation
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 445058**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Dry matter intake in US Holstein cows: exploring the genomic and phenotypic impact of milk components and body weight composite

- (Peer Reviewed Journal)Updating test-day milk yield factors for use in genetic evaluations and dairy production systems: A comprehensive review
                                                        

- (Peer Reviewed Journal)Wu, X.-L., Wiggans, G.R., Norman, H.D., Caputo, M., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Sievert, S., Mattison, J., Burchard, J., Durr, J. 2023. Updating test-day milk yield factors for use in genetic evaluations and dairy production systems: A comprehensive review. Frontiers in Genetics. 14:1298114. https://doi.org/10.3389/fgene.2023.1298114.Genome-wide acetylation modification of H3K27ac in bovine rumen cell following butyrate exposure
                                                        

- (Peer Reviewed Journal)Kang, X., Li, C., Liu, S., Baldwin, R.L., Liu, G., Li, C.-J. 2023. Genome-wide acetylation modification of H3K27ac in bovine rumen cell following butyrate exposure. Biomolecules. 13(7):1137.  https://doi.org/10.3390/biom13071137.Estimating test day milk yields by modeling proportional daily yields: Going beyond linearity
                                                        

- (Peer Reviewed Journal)Wu, X., Wiggans, G.R., Norman, H.D., Enzenauer, H.A., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Burchard, J., Durr, J. 2023. Estimating test day milk yields by modeling proportional daily yields: Going beyond linearity. Journal of Dairy Science. 106(12):8979-9005. https://doi.org/10.3168/jds.2023-23479.Get test-day milk yields right: what have we learned?

- (Abstract Only)Wu, X., Wiggans, G.R., Norman, H.D., Enzenaur, H.A., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Sievert, S.J., Mattison, J., Burchard, J., Durr, J. 2023. Get test-day milk yields right: What have we learned? [abstract]. Journal of Dairy Science. 106(Suppl. 1):154(abstr. 2624).Does modeling causal relationships improve the accuracy of estimating lactation milk yields?
                                                        

- (Peer Reviewed Journal)Wu, X., Miles, A.M., Van Tassell, C.P., Wiggans, G.R., Norman, H.D., Baldwin, R.L., Burchard, J., Durr, J. 2023. Does modeling causal relationships improve the accuracy of estimating lactation milk yields? Journal of Dairy Science Communications. https://doi.org/10.3168/jdsc.2022-0343.Impact of parity differences on residual feed intake estimation in Holstein cows
                                                        

- (Peer Reviewed Journal)Cavani, L., Parker Gaddis, K.L., Baldwin, R.L., Santos, J.E., Koltes, J.E., Tempelman, R.J., Vandehaar, M.J., Caputo, M.J., White, H.M., Penagaricano, F., Weigel, K.A. 2023. Impact of parity differences on residual feed intake estimation in Holstein cows. Journal of Dairy Science Communications. https://doi.org/10.3168/jdsc.2022-0307.Impact of epistasis effects on the accuracy of predicting phenotypic
values of residual feed intake in U.S. Holstein cows
                                                        

- (Peer Reviewed Journal)Liang, Z., Prakapenka, D., Parker Gaddis, K.L., Vandehaar, M.J., Weigel, K.A., Tempelman, R.J., Koltes, J.E., Santos, J.P., White, H.M., Penagaricano, F., Baldwin, R.L., Da, Y. 2022. Impact of epistasis effects on the accuracy of predicting phenotypic values of residual feed intake in U.S. Holstein cows. Frontiers in Genetics. 13:1017490. https://doi.org/10.3389/fgene.2022.1017490.An exponential regression model to estimate daily milk yields

- (Proceedings)Wu, X.-L., Wiggans, G.R., Norman, H.D., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Burchard, J., Durr, J. 2022. An exponential regression model to estimate daily milk yields. Interbull Bulletin. 57:67-73.Daily milk yield correction factors: what are they?
                                                        

- (Peer Reviewed Journal)Wu, X., Wiggans, G.R., Norman, H.D., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Burchard, J., Durr, J. 2022. Daily milk yield correction factors: what are they? Journal of Dairy Science Communications. https://doi.org/10.3168/jdsc.2022-0230.Butyrate induces modifications of the CTCF-binding landscape in cattle cells
                                                        

- (Peer Reviewed Journal)Boschiero, C., Gao, Y., Baldwin, R.L., Ma, L., Li, C., Liu, G. 2022. Butyrate induces modifications of the CTCF-binding landscape in cattle cells. Biomolecules. 12(9):1177.  https://doi.org/10.3390/biom12091177.Differentially CTCF-binding sites in cattle rumen tissue during weaning
                                                        

- (Peer Reviewed Journal)Boschiero, C., Gao, Y., Baldwin, R.L., Ma, L., Li, C., Liu, G. 2022. Differentially CTCF-binding sites in cattle rumen tissue during weaning. International Journal of Molecular Sciences. 23(16):9070. https://doi.org/10.3390/ijms23169070.Investigation of rumen long noncoding RNA before and after weaning in cattle
                                                        

- (Peer Reviewed Journal)Marceau, A., Gao, Y., Baldwin, R.L., Li, C., Jiang, J., Ma, L., Liu, G. 2022. Investigation of rumen long noncoding RNA before and after weaning in cattle. BMC Genomics. 23:531. https://doi.org/10.1186/s12864-022-08758-4.Statistical methods revisited for estimating daily milk yields: how well do they work?
                                                        

- (Peer Reviewed Journal)Wu, X., Wiggans, G.R., Norman, H.D., Miles, A.M., Van Tassell, C.P., Baldwin, R.L., Burchard, J., Durr, J. 2022. Statistical methods revisited for estimating daily milk yields: how well do they work? Frontiers in Genetics. 13:943705. https://doi.org/10.3389/fgene.2022.943705.Predicting dry matter intake in Canadian Holstein dairy cattle using milk mid-infrared reflectance spectroscopy and other 
commonly available predictors via artificial neural networks
                                                        

- (Peer Reviewed Journal)Shadpour, S., Chud, T.C., Hailemariam, D., Oliveira, H.R., Plastow, G., Stothard, P., Lassen, J., Baldwin, R.L., Miglior, F., Baes, C., Tulpan, D., Schenkel, F.S. 2022. Predicting dry matter intake in Canadian Holstein dairy cattle using milk mid-infrared reflectance spectroscopy and other  commonly available predictors via artificial neural networks. Journal of Dairy Science. 105(10):8257–8271. https://doi.org/10.3168/jds.2021-21297.Predicting dry matter intake in Canadian Holstein dairy cattle using milk mid-infrared reflectance spectroscopy and other commonly available predictors via artificial neural networks
                                                        

- (Peer Reviewed Journal)Shadpour, S., Chud, T.C., Hailemariam, D., De Oliveira, H.R., Plastow, G., Stothard, P., Lassen, J., Baldwin, R.L., Miglior, F., Baes, C.F., Tulpan, D., Schenkel, F.S. 2022. Predicting dry matter intake in Canadian Holstein dairy cattle using milk mid-infrared reflectance spectroscopy and other commonly available predictors via artificial neural networks. Journal of Dairy Science. 105(10):8257–8271. https://doi.org/10.3168/jds.2021-21297.The dynamics of chromatin accessibility prompted by butyrate-induced chromatin modification in bovine cells
                                                        

- (Peer Reviewed Journal)Boschiero, C., Gao, Y., Liu, M., Baldwin, R.L., Ma, L., Li, C., Liu, G. 2022. The dynamics of chromatin accessibility prompted by butyrate-induced chromatin modification in bovine cells. Ruminants. 2(2):226-243. https://doi.org/10.3390/ruminants2020015.Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide
                                                        

- (Peer Reviewed Journal)Gao, Y., Li, J., Cai, G., Wang, Y., Yang, W., Li, Y., Zhao, X., Li, R., Gao, Y., Tuo, W., Baldwin, R.L., Li, C., Fang, L., Liu, G.E. 2022. Single-cell transcriptomic and chromatin accessibility analyses of dairy cattle peripheral blood mononuclear cells and their responses to lipopolysaccharide. BMC Genomics. 23:338. https://doi.org/10.1186/s12864-022-08562-0.Multiple-trait random regression modeling of feed efficiency in US Holsteins
                                                        

- (Peer Reviewed Journal)Khanal, P., Parker Gaddis, K.L., Vandehaar, M., Weigel, K., White, H., Penagaricano, F., Koltes, J., Santos, J., Baldwin, R.L., Buchard, J., Durr, J., Templeton, R. 2022. Multiple-trait random regression modeling of feed efficiency in US Holsteins. Journal of Dairy Science. 105(7):5954-5971. https://doi.org/10.3168/jds.2021-21739.Characterization of accessible chromatin regions in cattle rumen epithelial tissue during weaning
                                                        

- (Peer Reviewed Journal)Boschiero, C., Gao, Y., Baldwin, R.L., Ma, L., Liu, G.E., Li, C.-J. 2022. Characterization of accessible chromatin regions in cattle rumen epithelial tissue during weaning. Genes. 13:535. https://doi.org/10.3390/genes13030535.Functional annotation of regulatory elements in cattle genome reveals the roles of extracellular interaction and dynamic change of chromatin states in rumen development during weaning
                                                        

- (Peer Reviewed Journal)Gao, Y., Liu, S., Baldwin, R.L., Connor, E.E., Cole, J.B., Ma, L., Fang, L., Li, C., Liu, G. 2022. Functional annotation of regulatory elements in cattle genome reveals the roles of extracellular interaction and dynamic change of chromatin states in rumen development during weaning. Genomics. 114:110296. https://doi.org/10.1016/j.ygeno.2022.110296.Transcriptional reprogramming in rumen epithelium during the developmental transition of pre-ruminant to the ruminant in cattle
                                                        

- (Peer Reviewed Journal)Baldwin, R.L., Liu, M., Connor, E.E., Ramsay, T.G., Liu, G., Li, C. 2021. Transcriptional reprogramming in rumen epithelium during the developmental transition of pre-ruminant to the ruminant in cattle. Animals. 11(10):2870. https://doi.org/10.3390/ani11102870.Implementation of feed saved evaluations in the U.S.

- (Proceedings)Parker Gaddis, K.L., Van Raden, P.M., Tempelman, R.J., Weigel, K.A., White, H.M., Penagaricano, F., Koltes, J.E., Santos, J.E., Baldwin, R.L., Burchard, J., Durr, J., Vandehaar, M.J. 2021. Implementation of feed saved evaluations in the U.S. Interbull Bulletin. 56:147–152.Single-cell transcriptomic analyses of cattle ruminal epithelial cells before and after weaning
                                                        

- (Peer Reviewed Journal)Gao, Y., Fang, L., Baldwin, R.L., Connor, E.E., Cole, J.B., Van Tassell, C.P., Ma, L., Li, C., Liu, G. 2021. Single-cell transcriptomic analyses of cattle ruminal epithelial cells before and after weaning. Genomics. 113(4):2045-2055. https://doi.org/10.1016/j.ygeno.2021.04.039.Genomic evaluations for Feed Saved in Holsteins

- (Abstract Only)Parker Gaddis, K.L., Van Raden, P.M., Tempelman, R.J., Weigel, K.A., White, H.M., Penagaricano, F., Koltes, J.E., Santos, J.E., Baldwin, R.L., Durr, J.W., Burchard, J.F., Vandehaar, M.J. 2021. Genomic evaluations for Feed Saved in Holsteins [abstract]. Journal of Dairy Science. 104(Suppl. 1):120(abstr. 302).Multiple trait random regression modelling of feed efficiency in dairy cattle

- (Abstract Only)Khanal, P., Parker Gaddis, K.L., Van Raden, P.M., Weigel, K.A., White, H.M., Penagaricano, F., Koltes, J.E., Santos, J.E., Baldwin, R.L., Burchard, J.F., Durr, J.W., Vandehaar, M.J., Tempelman, R. 2021. Multiple trait random regression modelling of feed efficiency in dairy cattle [abstract]. Journal of Dairy Science. 104(Suppl. 1):120(abstr. 303).Improving dairy feed efficiency, sustainability, and profitability by impacting farmer's breeding and culling decisions

- (Abstract Only)Vandehaar, M.J., Tempelman, R., Koltes, J.E., Appuhamy, R., White, H.M., Weigel, K.A., Baldwin, R.L., Van Raden, P.M., Penagaricano, F., Santos, J.E., Durr, J.W., Nicolazzi, E., Burchard, J.F., Parker Gaddis, K.L. 2021. Improving dairy feed efficiency, sustainability, and profitability by impacting farmer's breeding and culling decisions [abstract]. International Committee on Animal Recording(ICAR), April 26-30, Leeuwarden, The Netherlands. Abstract 8.6.Implementation of Feed Saved evaluations in the U.S.

- (Abstract Only)Synthetic alkaloid treatment influences the intestinal epithelium and mesenteric adipose transcriptome in Holstein steers
                                                        

- (Peer Reviewed Journal)McLean, K.J., Baldwin, R.L., Li, C., Klotz, J.L., Edwards, J.L., McLeod, K.R. 2020. Synthetic alkaloid treatment influences the intestinal epithelium and mesenteric adipose transcriptome in Holstein steers. Frontiers in Veterinary Science. 7. Article 615. https://doi.org/10.3389/fvets.2020.00615.The profiling of DNA methylation and its regulation on divergent tenderness in Angus beef cattle
                                                        

- (Peer Reviewed Journal)Zhao, C., Ji, G., Carrillo, J.A., Li, Y., Tian, F., Baldwin, R.L., Zan, L., Song, J. 2020. The profiling of DNA methylation and its regulation on divergent tenderness in Angus beef cattle. Frontiers in Genetics. 11:939. https://doi.org/10.3389/fgene.2020.00939.Establishment and transcriptomic analyses of a cattle rumen epithelial
primary cells (REPC) culture by bulk and single-cell RNA sequencing to
elucidate interactions of butyrate and rumen development
                                                        

- (Peer Reviewed Journal)Lin, S., Fang, L., Kang, X., Liu, S., Liu, M., Connor, E.E., Baldwin, R.L., Liu, G., Li, C. 2020. Establishment and transcriptomic analyses of a cattle rumen epithelial primary cells (REPC) culture by bulk and single-cell RNA sequencing to elucidate interactions of butyrate and rumen development. Heliyon. 6(6):e041123. https://doi.org/10.1016/j.heliyon.2020.e04112.Comparative whole genome DNA methylation profiling of cattle tissues reveals global and tissue-specific methylation patterns
                                                        

- (Peer Reviewed Journal)Zhou, Y., Liu, S., Hu, Y., Fang, L., Gao, Y., Xia, H., Schroeder, S.G., Rosen, B.D., Connor, E.E., Li, C., Baldwin, R.L., Cole, J.B., Van Tassell, C.P., Yang, L., Ma, L., Liu, G. 2020. Comparative whole genome DNA methylation profiling of cattle tissues reveals global and tissue-specific methylation patterns. BMC Biology. 18(1):85. https://doi.org/10.1186/s12915-020-00793-5.Epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment
                                                        

- (Peer Reviewed Journal)Kang, X., Liu, S., Fang, L., Lin, S., Liu, M., Baldwin, R.L., Liu, G., Li, C. 2020. Epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment. Data in Brief. 28:104983. https://doi.org/10.1016/j.dib.2019.104983.Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations
                                                        

- (Peer Reviewed Journal)Fang, L., Liu, S., Liu, M., Kang, X., Lin, S., Li, B., Connor, E.E., Baldwin, R.L., Tenesa, A., Ma, L., Liu, G., Li, C. 2019. Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations. BMC Biology. 17(1):68. https://doi.org/10.1186/s12915-019-0687-8.Transcriptomic profiling of duodenal epithelium reveals temporally dynamic impacts of direct duodenal starch-infusion during dry period of dairy cattle
                                                        

- (Peer Reviewed Journal)Li, C., Lin, S., Ranilla-Garcia, M.J., Baldwin, R.L. 2019. Transcriptomic profiling of duodenal epithelium reveals temporally dynamic impacts of direct duodenal starch-infusion during dry period of dairy cattle. Frontiers in Veterinary Science. 6:214. https://doi.org/10.3389/fvets.2019.00214.Effect of milking frequency and alpha-tocopherol plus selenium supplementation on sheep milk lipid composition and oxidative stability
                                                        

- (Peer Reviewed Journal)Pulido, E., Fernandez, M., Prieto, N., Baldwin, R.L., Andres, S., Lopez, S., Giraldez, F.J. 2019. Effect of milking frequency and alpha-tocopherol plus selenium supplementation on sheep milk lipid composition and oxidative stability. Journal of Dairy Science. 102(4):3097-3109. https://doi.org/10.3168/jds.2018-15456.Temporal dynamics in meta longitudinal RNA-Seq data
                                                        

- (Peer Reviewed Journal)Oh, S., Li, C., Baldwin, R.L., Song, S., Liu, F., Li, R.W. 2019. Temporal dynamics in meta longitudinal RNA-Seq data. Scientific Reports. 9(1):763. https://doi.org/10.1038/s41598-018-37397-7.Transcriptomic impacts of rumen epithelium induced by butyrate infusion in dairy cattle in dry period

- (Abstract Only)Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing
                                                        

- (Peer Reviewed Journal)Capuco, A.V., Bickhart, D.M., Li, C., Clover, C.M., Choudhary, R., Grossi, P., Bertoni, G., Trevisi, E., Aiken, G.E., Mcleod, K.R., Baldwin, R.L. 2018. Effect of consuming endophyte-infected fescue seed on transcript abundance in the mammary gland of lactating and dry cows, as assessed by RNA sequencing. Journal of Dairy Science. 101(11):10478–10494. https://doi.org/10.3168/jds.2018-14735.Assembly and analysis of changes in transcriptomes of dairy cattle rumen epithelial during lactation and dry periods
                                                        

- (Peer Reviewed Journal)Baldwin, R.L., Li, C., Li, R.W. 2018. Assembly and analysis of changes in transcriptomes of dairy cattle rumen epithelial during lactation and dry periods. Agricultural Sciences. 9:619-638. https://doi.org/10.4236/as.2018.95043.Profiling of transcriptome responses of the intestinal epithelium to starch hydrolysate direct infusion using RNA-seq technology
                                                        

- (Abstract Only)Li, C., Baldwin, R.L. 2018. Profiling of transcriptome responses of the intestinal epithelium to starch hydrolysate direct infusion using RNA-seq technology. Journal of Animal Science. 96(Suppl_3):425. https://doi.org/10.1093/jas/sky404.931.Transcriptomic impacts of rumen epithelium induced by butyrate infusion in dairy cattle in dry period
                                                        

- (Peer Reviewed Journal)Baldwin, R.L., Li, R.W., Jia, Y., Li, C. 2018. Transcriptomic impacts of rumen epithelium induced by butyrate infusion in dairy cattle in dry period. Gene Regulation and Systems Biology. 12:1–11. https://doi.org/10.1177/1177625018774798.Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm
                                                        

- (Peer Reviewed Journal)Zhou, Y., Connor, E.E., Bickhart, D.M., Li, C., Baldwin, R.L., Schroeder, S.G., Rosen, B.D., Yang, L., Van Tassell, C.P., Liu, G. 2018. Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm. Gigascience. 7(5):1-13. https://doi.org/10.1093/gigascience/giy039.Genome-wide sequencing and comparative profiling of cattle sperm DNA methylome reveals its hypomethylated patterns

- (Abstract Only)Rumen function and development

- (Peer Reviewed Journal)Baldwin, R.L., Connor, E.E. 2017. Rumen function and development. Veterinary Clinics of North America: Food Animal Practice. https://doi.org/10.1016/j.cvfa.2017.06.001.Selection of internal reference genes for normalization of reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis in the rumen epithelium

- (Peer Reviewed Journal)Die, J.V., Baldwin, R.L., Rowland, L.J., Li, R.W., Oh, S., Li, C., Connor, E.E., Ranilla, M. 2017. Selection of internal reference genes for normalization of reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis in the rumen epithelium. PLoS One. 12(2):e0172674.Reducing gut effects from Cryptosporidium parvum infection in dairy calves through prophylactic glucagon-like peptide 2 therapy or feeding of an artificial sweetener

- (Peer Reviewed Journal)Connor, E.E., Wall, E.H., Bravo, D.M., Clover, C.M., Elsasser, T.H., Baldwin, R.L., Santin, M., Kahl, S., Vinyard, B.T., Walker, M.P. 2017. Reducing gut effects from Cryptosporidium parvum infection in dairy calves through prophylactic glucagon-like peptide 2 therapy or feeding of an artificial sweetener. Journal of Dairy Science. 100(4):3004-3018.Consumption of endophyte-infected fescue seed during the dry period does not decrease milk production in the following lactation
                                                        

- (Peer Reviewed Journal)Baldwin, R.L., Capuco, A.V., Clover, C.M., Grossi, P., Choudhary, R.K., Vanzant, E.S., Elsasser, T.H., Bertoni, G., Trevisi, E., Aiken, G.E., Mcleod, K.R. 2016. Consumption of endophyte-infected fescue seed during the dry period does not decrease milk production in the following lactation. Journal of Dairy Science. 99(9):7574-7589. https://doi.org/10.3168/jds.2016-10993.Consumption of endophyte-infected fescue seed during the dry period and lactation affects mammary gland gene expression in dairy cows

- (Abstract Only)Baldwin, R.L., Li, C., Bickhart, D.M., Clover, C.M., Grossi, P., Choudhary, R.K., Elsasser, T.H., Bertoni, G., Trevisi, E., Aiken, G.E., Mcleod, K.R., Capuco, A.V. 2016. Consumption of endophyte-infected fescue seed during the dry period and lactation affects mammary gland gene expression in dairy cows. Journal of Dairy Science. Vol. 99 (E-Supplement 1):401.The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome

- (Peer Reviewed Journal)Li, R.W., Li, W., Baldwin, R.L., Yu, P., Urban Jr, J.F. 2016. The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome. Scientific Reports. 6:20606.Glucagon-like peptide 2 and its beneficial effects on gut function and health in production animals
                                                        

- (Review Article)Connor, E.E., Clover, C.M., Wall, E.H., Baldwin, R.L., Santin, M., Elsasser, T.H., Bravo, D. 2016. Glucagon-like peptide 2 and its beneficial effects on gut function and health in production animals. Domestic Animal Endocrinology. 56:S56-S65.Transcriptomic sequencing reveals a set of unique genes activated by butyrate-induced histone modification

- (Peer Reviewed Journal)Li, C., Li, R.W., Baldwin, R.L., Blomberg, L., Wu, S., Li, W. 2016. Transcriptomic sequencing reveals a set of unique genes activated by butyrate-induced histone modification. Scientific Reports. 10:1-8.Glucagon-like peptide 2 and its beneficial effects on gut function and health in production animals

- (Abstract Only)Connor, E.E., Clover, C.M., Wall, E.H., Baldwin, R.L., Santin, M., Elsasser, T.H., Bravo, D.M. 2015. Glucagon-like peptide 2 and its beneficial effects on gut function and health in production animals [abstract]. Proceedings of 8th International Conference on Farm Animal Endocrinology. p. 18.Role of rumen butyrate in regulation of nitrogen utilization and urea nitrogen kinetics in growing sheep

- (Peer Reviewed Journal)Agarwal, U., Hu, Q., Baldwin, R.L., Bequette, B. 2015. Role of rumen butyrate in regulation of nitrogen utilization and urea nitrogen kinetics in growing sheep. Journal of Animal Science. 93:2382-2390. DOI: 10.2527/jas.2014-8738.Transcriptional regulators transforming growth factor-beta 1 and estrogen-related receptor-alpha identified as putative mediators of calf rumen epithelial tissue development and function during weaning
                                                        

- (Peer Reviewed Journal)Connor, E.E., Baldwin, R.L., Walker, M.P., Ellis, S., Li, C., Kahl, S., Chung, H., Li, R.W. 2014. Transcriptional regulators transforming growth factor-beta 1 and estrogen-related receptor-alpha identified as putative mediators of calf rumen epithelial tissue development and function during weaning. Journal of Dairy Science. 97:4193-4207.Role and function of short chain fatty acids in rumen epithelial metabolism, development and importance of the rumen epithelium in understanding control of transcriptome

- (Book / Chapter)Baldwin, R.L., Mcleod, K.R. 2014. Role and function of short chain fatty acids in rumen epithelial metabolism, development and importance of the rumen epithelium in understanding control of transcriptome. In: Congjun, Li, Editor. Butyrate: Food Sources, Functions and Health Benefits. New York, NY: Nova Science Publishers. p. 119-218.Ileal tight junction gene expression in glucagon-like peptide 2-treated dairy bull calves with and without coccidiosis

- (Abstract Only)Walker, M.P., Baldwin, R.L., Kahl, S., Connor, E.E. 2014. Ileal tight junction gene expression in glucagon-like peptide 2-treated dairy bull calves with and without coccidiosis. Journal of Dairy Science. 97(E-Suppl. 1):687. Abstract M208.A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells

- (Peer Reviewed Journal)Shin, J., Xu, L., Li, R.W., Gao, Y., Bickhart, D.M., Liu, G., Baldwin, R.L., Li, C. 2014. A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells. Animal Genetics. 45:40–50. DOI:10.1111.age.12147.Butyrate: A dietary inhibitor of histone deacetylases and an epigenetic regulator

- (Book / Chapter)Li, C., Li, R.W., Baldwin, R.L., Elsasser, T.H. 2014. Butyrate: A dietary inhibitor of histone deacetylases and an epigenetic regulator. Butyrate: Food Sources, Functions and Health Benefits. New York, NY:Nova Science Publishers. p.233-258.Comparative glycolysis and Krebs cycle metabolism of the bovine and murine mammary gland determined with [13C6] glucose and mass spectrometry

- (Abstract Only)Juengst, L.J., Connor, E.E., Baldwin, R.L., Bequette, B.J. 2014. Comparative glycolysis and Krebs cycle metabolism of the bovine and murine mammary gland determined with [13C6] glucose and mass spectrometry. Journal of Dairy Science. 97(E-Suppl. 1):613. Abstract W146.Hot Topic: Brown marmorated stink bug odor compounds do not transfer into milk by feeding bug-contaminated corn silage to lactating dairy cattle

- (Peer Reviewed Journal)Baldwin, R.L., Zhang, A., Fultz, S., Abubeker, S.U., Harris, C., Connor, E.E., Van Hekken, D.L. 2014. Hot Topic: Brown marmorated stink bug odor compounds do not transfer into milk by feeding bug-contaminated corn silage to lactating dairy cattle. Journal of Dairy Science. 97:1877-1884.Functional proteomic and interactome analysis of proteins associated with beef tenderness in angus cattle

- (Peer Reviewed Journal)Zhao, C., Zan, L., Wang, Y., Updike, M., Liu, G., Bequette, B.J., Baldwin, R.L., Song, J. 2013. Functional proteomic and interactome analysis of proteins associated with beef tenderness in angus cattle. Livestock Science. 161:201-209.The life and legacy of Dr. Lee Baldwin

- (Proceedings)Baldwin, R.L., Calvert, C.C. 2013. The life and legacy of Dr. Ransom Leland (Lee) Baldwin V. In:J. Oltjen, E. Kebreab, and H. Lapierre (Eds.), Energy and protein metabolism and nutriion in sustainable animal production. Proceedings of the 4th Symposium. Sacramento, CA. pp. 515-516. Wageningen Academic Publishers, The Netherlands. 2013.Use of residual feed intake in Holsteins during early lactation shows potential to improve feed efficiency through genetic selection

- (Peer Reviewed Journal)Connor, E.E., Hutchison, J.L., Norman, H.D., Olson, K.M., Van Tassell, C.P., Leith, J.M., Baldwin, R.L. 2013. Use of residual feed intake in Holsteins during early lactation shows potential to improve feed efficiency through genetic selection. Journal of Animal Science. 91:3978-3988.Brown marmorated stink bug odor compounds do not transfer into milk in lactating dairy cattle by feeding bug contaminated corn silage

- (Abstract Only)Baldwin, R.L., Zhang, A., Fultz, S., Abubeker, S.U., Harris, C., Connor, E.E., Van Hekken, D.L. 2013. Brown marmorated stink bug odor compounds do not transfer into milk in lactating dairy cattle by feeding bug contaminated corn silage. In: J. Anim. Sci Vol. 91, E-Suppl. 2/J. Dairy Sci. Vol. 96, E-Suppl. 1, pp. 263.Cellular composition and expression of potential stem cell markers in mammary tissue of cows consuming endophyte-infected fescue seed during the dry period and early lactation

- (Abstract Only)Choudhary, R.K., Baldwin, R.L., Clover, C.M., Grossi, P., Elsasser, T.H., Bertoni, G., Trevisi, E., Mcleod, K.R., Capuco, A.V. 2013. Cellular composition and expression of potential stem cell markers in mammary tissue of cows consuming endophyte-infected fescue seed during the dry period and early lactation. In: J. Anim. Sci. Vol. 91, E-Suppl. 2/J. Dairy Sci. Vol. 96, E-Suppl. 1,  pp. 571.Gene expression in bovine rumen epithelium during weaning indentifies molecular regulators of rumen development and growth

- (Peer Reviewed Journal)Connor, E.E., Baldwin, R.L. 6th , Li, C., Li, R.W., Chung, H. 2013. Gene expression in bovine rumen epithelium during weaning indentifies molecular regulators of rumen development and growth. Functional and Integrative Genomics. 13:133-142.Glucagon-like peptide 2 therapy reduces negative effects of diarrhea on calf gut

- (Peer Reviewed Journal)Connor, E.E., Kahl, S., Elsasser, T.H., Baldwin, R.L., Fayer, R., Santin, M., Sample, G.L., Clover, C.M. 2013. Glucagon-like peptide 2 therapy reduces negative effects of diarrhea on calf gut. Journal of Dairy Science. 96(3):1793-1802.Glucagon-like peptide 2 therapy reduces the negative impacts the proinflammatory response in the gut of calves with coccidiosis

- (Abstract Only)Connor, E.E., Kahl, S., Elsasser, T.H., Baldwin, R.L., Fayer, R., Santin, M., Sample, G.L., Clover, C.M. 2012. Glucagon-like peptide 2 therapy reduces the negative impacts the proinflammatory response in the gut of calves with coccidiosis. Meeting Abstract. p.17.Paper No. 403.Quantification of transcriptome responses of the rumen epithelium to butyrate infusion

- (Peer Reviewed Journal)Baldwin, R.L., Wu, S., Li, W., Li, C., Bequette, B.J., Li, R.W. 2012. Quantification of transcriptome responses of the rumen epithelium to butyrate infusion. Gene Regulation and Systems Biology. 6:67–80.The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes

- (Peer Reviewed Journal)Wu, S., Baldwin, R.L., Li, W., Li, C., Connor, E.E., Li, R.W. 2012. The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes. Metagenomics. 1:11. DOI:10.4303/mg/235571.Muscle Transcriptomic Analyses in Angus Cattle with Divergent Tenderness

- (Peer Reviewed Journal)Zhao,C., Tian, F., Yu, Y., Luo, J., Hu, Q., Bequette, B.J., Baldwin, R.L., Liu, G., Zan, L., Updike, M., Song, J. 2012. Muscle Transcriptomic Analyses in Angus Cattle with Divergent Tenderness. Molecular Biology Reports. 39(4):4185-93.Characterization of differentially expressed genes in calf rumen epithelium in response to weaning

- (Abstract Only)Chung, H., Baldwin, R.L., Li, C., Connor, E.E. 2012. Characterization of differentially expressed genes in calf rumen epithelium in response to weaning. BARC Poster Day. p. 05.Effects of feeding endophyte-infected fescue seed to Holstein cows during the dry period on plasma nitric oxide (NO), xanthine oxidase (XO) and haptoglobin (Hp) status in newborn calves.

- (Abstract Only)Kahl, S., Elsasser, T.H., Baldwin, R.L., Capuco, A.V., Grossi, P., Mcload, K.R. 2012. Effects of feeding endophyte-infected fescue seed to Holstein cows during the dry period on plasma nitric oxide (NO), xanthine oxidase (XO) and haptoglobin (Hp) status in newborn calves.. Journal of Animal Science. 90 (Suppl. 3):508.Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers

- (Peer Reviewed Journal)Baldwin, R.L., Li, R.W., Li, C., Song, J., Bequette, B.J. 2012. Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing Angus beef steers. Physiological Genomics. 44:543-550. DOI:10.1152/physiolgenomics.Increased milk production by Holstein cows consuming endophyte-infected fescue seed during the dry period.

- (Abstract Only)Baldwin, R.L., Capuco, A.V., Clover, C.M., Grossi, P., Choudhary, R.K., Elsasser, T.H., Bertoni, G., Trevisi, E., Harmon, D., Mcleod, K.R. 2012. Increased milk production by Holstein cows consuming endophyte-infected fescue seed during the dry period [abstract]. 95(Suppl. 2):416  90 (Suppl. 3):416.GROWTH AND DEVELOPMENT SYMPOSIUM: Understanding and mitigating the impacts of inflammation on animal growth and development

- (Proceedings)Connor, E.E., Baldwin, R.L., Blanton Jr., J.R., Johnson, S.E., Poulos, S., Welsh Jr., T.H. 2012. GROWTH AND DEVELOPMENT SYMPOSIUM: Understanding and mitigating the impacts of inflammation on animal growth and development. Journal of Animal Science. 90(5):1436-1437.Genome-wide ChIP-seq mapping and analysis of butyrate-induced H3K9 and H3K27 acetylation and epigenomic landscape alteration in bovine cells

- (Peer Reviewed Journal)Heon Shin, J., Li, R.W., Gao, Y., Baldwin, R.L., Li, C. 2012. Genome-wide ChIP-seq mapping and analysis of butyrate-induced H3K9 and H3K27 acetylation and epigenomic landscape alteration in bovine cells. Functional and Integrative Genomics. 12(1):119-130.Perturbation dynamics of the rumen microbiota in response to exogenous butyrate

- (Peer Reviewed Journal)Li, R.W., Wu, S., Li, W., Baldwin, R.L., Li, C. 2012. Perturbation dynamics of the rumen microbiota in response to exogenous butyrate. Public Library of Science Biology. 7(1):e29392. DOI:10.1371/journal.pone.0029392.Genome-wide ChIP-seq mapping and analysis of butyrate-induced H3K9 and H3K27 acetylation and epigenomic landscapes alteration in bovine cells

- (Abstract Only)Li, C., Li, R.W., Gao, Y., Shin, J., Baldwin, R.L. 2012. Genome-wide ChIP-seq mapping and analysis of butyrate-induced H3K9 and H3K27 acetylation and epigenomic landscapes alteration in bovine cells [abstract]. Annual International Plant & Animal Genome Conference. W. 020.Characterization of the rumen microbiota in pre-ruminant calves using metagenomic tools

- (Peer Reviewed Journal)Li, R.W., Connor, E.E., Li, C., Baldwin, R.L., Sparks, M. 2011. Characterization of the rumen microbiota in pre-ruminant calves using metagenomic tools. Environmental Microbiology. 14(1):129-139.Influence of energy supply on expression of genes encoding for lipogenic enzymes and regulatory proteins in growing beef steers

- (Other)Mcleod, K.R., Baldwin, R.L., Connor, E.E. 2010. Influence of energy supply on expression of genes encoding for lipogenic enzymes and regulatory proteins in growing beef steers. Beef Research and Extension Report. Agr. Report SR-2010. pp. 161-167.The glucagon-like peptide 2 pathway may mediate growth and development of the bovine gastrointestinal tract

- (Peer Reviewed Journal)Connor, E.E., Baldwin, R.L., Capuco, A.V., Clover, C.M., Ellis, S.E., Sciabica, K.E. 2010. The glucagon-like peptide 2 pathway may mediate growth and development of the bovine gastrointestinal tract. Journal of Dairy Science. 93:5167-5178.Hepatic transcriptome of beef steers is differentially modulated by composition of energy-substrate supply in growing beef

- (Proceedings)Baldwin, R.L., Sumner-Thomson, J., Connor, E.E., Li, R.W., Mcleod, K.R., Bequette, B.J. 2010. Hepatic transcriptome of beef steers is differentially modulated by composition of energy-substrate supply in growing beef. In: G.M. Crovetto (Ed.), Energy and Protein Metabolism and Nutrition; Parma, Italy. pp. 313-314. Wageningen Academic Publishers, The Netherlands.Metagenomics detects functional shifts in the bovine rumen microbiota in response to propionate intake

- (Book / Chapter)Sparks, M., Huang, Y., Baldwin, R.L., Connor, E.E., Li, C., Sonstegard, T.S., Schroeder, S.G., Li, R.W. 2011. Metagenomics detects functional shifts in the bovine rumen microbiota in response to propionate intake. In: Li, R.W. editor. Metagenomics and its Applications in Agriculture. New York, NY: Nova Science Publishers. p. 165-183.Glucagon-like peptide 2 may mediate growth and development of the bovine gastrointestinal tract

- (Abstract Only)Connor, E.E., Baldwin, R.L., Capuco, A.V., Clover, C.M., Ellis, S.E. 2010. Glucagon-like peptide 2 may mediate growth and development of the bovine gastrointestinal tract. Journal of Animal Science 88(2), E-Suppl:631.Gene expression profiling in bovine rumen during development and weaning

- (Other)Connor, E.E., Baldwin, R.L., Li, R.W. 2009. Gene expression profiling in bovine rumen during development and weaning. Accession Number GSE18382.Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes

- (Review Article)Connor, E.E., Li, R.W., Baldwin, R.L., Li, C. 2009. Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes. Animal. 4(7):993-1007.Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth

- (Peer Reviewed Journal)Connor, E.E., Kahl, S., Elsasser, T.H., Parker, J., Li, R.W., Van Tassell, C.P., Baldwin, R.L., Barao, S.M. 2009. Enhanced mitochondrial complex gene function and reduced liver size may mediate improved feed efficiency of beef cattle during compensatory growth. Functional and Integrative Genomics. 10(1):39-51.Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes

- (Abstract Only)Connor, E.E., Li, R.W., Baldwin, R.L., Li, C. 2009. Gene expression in the digestive tissues of ruminants and their relationships with feeding and digestive processes.ISRP XIth International Symposium on Ruminant Physiology, Clermont-Ferrand, France, September 6-9.Estimates of residual feed intake in Holstein dairy cattle using an automated, continuous feed intake monitoring system

- (Abstract Only)Connor, E.E., Hutchison, J.L., Norman, H.D., Baldwin, R.L. 2009. Estimates of residual feed intake in Holstein dairy cattle using an automated, continuous feed intake monitoring system. [abstract]. Journal of Dairy Science. 92(E-Suppl. 1):123. Abstract 33.Glutamate is the major anaplerotic substrate in the tricarboxylic acid cycle of isolated rumen epithelial and duodenal mucosal cells from beef cattle

- (Peer Reviewed Journal)El-Dadi, S.W., Baldwin, R.L., Mcleod, K.R., Sunny, N.E., Bequette, B.J. 2009. Glutamate is the major anaplerotic substrate in the tricarboxylic acid cycle of isolated rumen epithelial and duodenal mucosal cells from beef cattle. Journal of Nutrition. 139(5):869-875.Predicting Perchlorate Exposure in Milk From Concentrations in Dairy Feed

- (Peer Reviewed Journal)Rice, C., Baldwin, R.L., Abbott, L., Hapeman, C.J., Capuco, A.V., Le, A.N., Bialek Kalinski, K.M., Bannerman, D.D., Hare Jr, W.R., Paape, M.J. 2007. Predicting Perchlorate Exposure in Milk From Concentrations in Dairy Feed. Journal of Agricultural and Food Chemistry. 55:8806-8813.Intestinal and ruminal epithelial and hepatic metabolism regulatory gene expression as affected by forage to concentrate ratio in bulls

- (Proceedings)Baldwin, R.L., El-Kadi, S.W., Mcleod, K.R., Connor, E.E., Bequette, B.J. 2007. Intestinal and ruminal epithelial and hepatic metabolism regulatory gene expression as affected by forage to concentrate ratio in bulls. Symposium Proceedings. pp. 293-294.Salvage of blood urea nitrogen in sheep is highly dependent on plasma urea concentration and the efficiency of capture within the diegestive tract

- (Peer Reviewed Journal)Sunny, N.E., Owens, S.L., Baldwin, R.L., El-Kadi, S.W., Kohn, R.A., Bequette, B.J. 2007. Salvage of blood urea nitrogen in sheep is highly dependent on plasma urea concentration and the efficiency of capture within the diegestive tract. Journal of Animal Science. 85(4):1006-1013.INFLUENCE OF RUMINAL AND POSTRUMINAL CARBOHYDRATE INFUSION ON VISCERAL ORGAN MASS AND ADIPOSE TISSUE ACCRETION IN GROWING BEEF STEERS.

- (Peer Reviewed Journal)Mccleod, K.E., Baldwin, R.L., Solomon, M.B., Baumann, R.G. 2007. Influence of ruminal and postruminal carbohydrate infusion on visceral organ mass and adipose tissue accretion in growing beef steers. Journal of Animal Science. 85:2256-2270.TRANSFER OF PERCHLORATE FROM DAIRY FEED TO MILK: POSSIBLE EXPOSURE SCENARIOS

- (Abstract Only)Rice, C., Abbott, L., Capuco, A.V., Hapeman, C.J., Baldwin, R.L., Hare Jr, W.R., Paape, M.J., Mccarty, G.W., Mcconnell, L.L., Van Tassell, C.P. 2006. Transfer of perchlorate from dairy feed to milk: possible exposure scenarios [abstract]. International Conference on The Future of Agriculture: Science, Stewardship and Sustainability (Aug 7-9, Sacramento, CA). 1:52.INFLUENCE OF ABOMASAL CARBOHYRDATES ON SUBCUTANEOUS, OMENTAL, AND MESENTERIC ADIPOSE LIPOGENIC AND LYPOLYTIC RATES IN GROWING BEEF STEERS.

- (Peer Reviewed Journal)Baldwin, R.L., Baumann, R.G., Mcleod, K.R. 2007. Influence of abomasal carbohyrdates on subcutaneous, omental, and mesenteric adipose lipogenic and lypolytic rates in growing beef steers. Journal of Animal Science. 85:2271-2282.EFFECT OF MASTITIS ON MILK PERCHLORATE CONCENTRATIONS IN DAIRY COWS

- (Peer Reviewed Journal)Bannerman, D.D., Paape, M.J., Baldwin, R.L., Rice, C., Bialek Kalinski, K.M., Capuco, A.V. 2006. Effect of mastitis on milk perchlorate concentrations in dairy cows. Journal of Dairy Science. 89(8):3011-3019.EFFECT OF PARTICLE SIZE ON PASSAGE RATES FROM THE RUMEN TO THE DUODENUM OF LACTATING DAIRY COWS.

- (Abstract Only)Peterson, A.B., Baldwin, R.L., Kohn, R. 2006. Effect of particle size on passage rates from the rumen to the duodenum of lactating dairy cows [abstract]. American Dairy Science and Society of Animal Science. 89:242.INFLUENCE OF CARBOHYDRATE INFUSION ON LIPOGENIC ENZYME AND REGULATORY PROTEIN GENE EXPRESSION IN GROWING BEEF STEER.

- (Abstract Only)Baldwin, R.L., Mcleod, K., Baumann, R.G., Connor, E.E. 2006. Influence of carbohydrate infusion on lipogenic enzyme and regulatory protein gene expression in growing beef steer [abstract]. Experimental Biology Meeting. FASEB Journal 20, Abstract #LB380.EFFECT OF RUMINALLY DEGRADED PROTEIN SOURCE ON NITROGEN METABOLISM IN HOLSTEIN COWS

- (Abstract Only)Peterson, A.B., Baldwin, R.L., Bequette, B.J., Kohn, R.A. 2006. Effect of ruminally degraded protein source on nitrogen metabolism in Holstein cows [abstract]. Journal of Dairy Science. 89(Suppl. 1)180.METABOLISM OF AMINO ACIDS AND GLUCOSE BY THE SHEEP GATROINTESTINAL TRACT IN RESPONSE TO POST-RUMINAL PROTEIN SUPPLIES.

- (Peer Reviewed Journal)El-Kadi, S.W., Baldwin, R.L., Sunny, N.E., Owens, S.L., Bequette, B.J. 2006. Metabolism of amino acids and glucose by the sheep gatrointestinal tract in response to post-ruminal protein supplies. Journal of Nutrition. 136(5):1261-1269.FATE OF DIETARY PERCHLORATE IN LACTATING DAIRY COWS: RELEVANCE TO ANIMAL HEALTH AND LEVELS IN THE MILK SUPPLY.

- (Peer Reviewed Journal)Capuco, A.V., Rice, C., Baldwin, R.L., Bannerman, D.D., Paape, M.J., Hare, Jr., W.R., Kauf, A.C., McCarty, G.W., Hapeman, C.J., Sadeghi, A.M., Starr, J.L., McConnell, L.L., Van Tassell, C.P. 2005. Fate of dietary perchlorate in lactating dairy cows: Relevance to animal health and levels in the milk supply. Proceedings of the National Academy of Sciences. 102(45):16152-16157.MILK PRODUCTON OF DAIRY COWS FED DIFFERING CONCENTRATIONS OF RUMEN DEGRADED PROTEIN

- (Peer Reviewed Journal)Kalscheur, K.F., Baldwin, R.L., Glenn, B.P., Kohn, R.A. 2006. Milk Producton of Dairy Cows Fed Differing cConcentrations of Rumen Degraded Protein. Journal of Dairy Sci. 89:249-259.METABOLIC FATES OF AMMONIA NITROGEN IN RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS ISOLATED FROM GROWING SHEEP.

- (Peer Reviewed Journal)Oba, M., Baldwin, R.L., Owens, S.L., Bequette, B.J. 2005. Metabolic fates of ammonia nitrogen in ruminal epithelial and duodenal mucosal cells isolated from growing sheep. Journal of Dairy Science. 88:3963-3970.PREDICTING PERCHLORATE EXPOSURE IN MILK FROM CONCENTRATIONS IN DAIRY FEED

- (Abstract Only)Rice, C., Abbott, L.C., Hapeman, C.J., Baldwin, R.L., Capuco, A.V., Mccarty, G.W., Hare Jr, W.R. 2005. Predicting perchlorate exposure in milk from concentrations in dairy feed. [abstract].American Chemical Society Annual Meeting Symposium Proceedings.  pp. 928-930.ASSESSING THE RELATIONSHIP BETWEEN RUMINAL PERCHLORATE INFUSION IN DAIRY COWS AND ITS LEVELS IN MILK

- (Abstract Only)Capuco, A.V., Baldwin, R.L., Rice, C., Hare Jr, W.R., Paape, M.J., Bannerman, D.D., Kauf, A.C., Mccarty, G.W., Sadeghi, A.M., Starr, J.L., Mcconnell, L.L., Hapeman, C.J., Van Tassell, C.P. 2005. Assessing the relationship between ruminal perchlorate infusion in dairy cows and its levels in milk [abstract]. Journal of Dairy Science. 88(1):237.EFFECT OF RUMINALLY DEGRADED PROTEIN SOURCE ON PRODUCTION PERFORMANCE IN HOLSTEIN COWS.

- (Abstract Only)Peterson, A.B., Baldwin, R.L., Kohn, R. 2005. Effect of ruminally degraded protein source on production performance in Holstein cows [abstract]. Journal of Animal Science. 88(1)99.CHARACTERIZATION OF A NORMALIZED CDNA LIBRARY FROM BOVINE INTESTINAL MUSCLE AND EPITHELIAL TISSUES

- (Peer Reviewed Journal)Baumann, R.G., Baldwin, R.L., Van Tassell, C.P., Matukumalli, L.K., Sonstegard, T.S. 2005. Characterization of a normalized cDNA library from bovine intestinal muscle and epithelial tissues. Animal Biotechnology. 16(1):17-30.EFFECT OF VFA ON AMMONIA UTILIZATION FOR AMINO ACID AND UREA SYNTHESIS BY RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS ISOLATED FROM GROWING SHEEP

- (Abstract Only)Baldwin, R.L., Bequette, B.J., Oba, M., Owens, S.L.,  2003. Effect of vfa on ammonia utilization for amino acid and urea synthesis by ruminal epithelial and duodenal mucosal cells isolated from growing sheep [abstract]. Journal of Dairy Science 86(Suppl. 1):280.CHARACTERIZATION OF A NORMALIZED CDNA LIBRARY FROM BOVINE INTESTINAL MUSCLE AND EPITHELIAL TISSUES

- (Abstract Only)Baumann, R.G., Baldwin, R.L., Sonstegard, T.S., Van Tassell, C.P., Matukumalli, L. 2004. Characterization of a normalized cDNA library from bovine intestinal muscle and epithelial tissues [abstract]. 7th International Meeting of the Microarray Gene Expression Data Society. p. 24.INFLUENCE OF ABOMASAL CARBOHYDRATES ON SMALL INTESTINAL SODIUM-DEPENDENT GLUCOSE CO-TRANSPORTER ACTIVITY AND ABUNDANCE IN STEERS

- (Peer Reviewed Journal)Baldwin, R.L., Rodriquez, S.M., Guimaraes, K.C., Matthews, J.C., Mcleod, K.M., Harmon, D.L. 2004. Influence of abomasal carbohydrates on small intestinal sodium-dependent glucose co-transporter activity and abundance in steers. Journal of Animal Science. 82:(10):3015-3023.CONSTRUCTION AND ANALYSIS OF A CDNA LIBRARY GENERATED FROM INTESTINAL MUSCLE AND EPITHELIAL TISSUES OF HOLSTEIN CATTLE: OVER 20,000 5'-EST SEQUENCES

- (Germplasm Release)Baumann, R.G., Baldwin, R.L., Sonstegard, T.S., Van Tassell, C.P., Matukumalli, L. 2004. Construction and analysis of a cDNA library generated from intestinal muscle and epithelial tissues of holstein cattle: over 20,000 5'-est sequences. Germplasm Release.USE OF AMMONIA-N BY RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS ISOLATED FROM GROWING SHEEP

- (Abstract Only)Oba, M., Baldwin, R.L., Owens, S.L., Bequette, B.J. 2004. Use of ammonia-n by ruminal epithelial and duodenal mucosal cells isolated from growing sheep. [abstract] ADSA/ASAS/PAS Joint Meeting, St. Louis, MO. vol. 83(suppl. 1, p.219UTILIZATION OF AMMONIA-N BY RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS ISOLATED FROM GROWING SHEEP

- (Abstract Only)Oba, M., Baldwin, R.L., Owens, S.L., Bequette, B.J. 2004. Utilization of ammonia-n by ruminal epithelial and duodenal mucosal cells isolated from growing sheep [abstract]. BARC Poster Day.CONSTRUCTION OF A NORMALIZED CDNA LIBRARY OF THE BOVINE INTESTINE: 8BOV-GENE IDENTIFICATION AND METABOLIC PATHWAY DISCOVERY

- (Abstract Only)Baumann, R.G., Baldwin, R.L., Sonstegard, T.S., Van Tassell, C.P., Matukumalli, L. 2004. Construction of a normalized cDNA library of the bovine intestine: 8BOV - Gene identification and metabolic pathway discovery [abstract]. BARC Poster Day. p. 32.BOVINE SOMATOTROPIN AND RUMEN UNDERGRADABLE PROTEIN EFFECTS ON ORGAN AND TISSUE WEIGHTS AND COMPONENTS OF GROWTH OF PREPUBERTAL HEIFERS.

- (Peer Reviewed Journal)Moallem, U., Dahl, G.E., Duffey, E.K., Capuco, A.V., Mcleod, K.R., Baldwin, R.L., Erdman, R.A. 2004. Bovine somatotropin and rumen undergradable protein effects in prepubertal heifers: Effects on body composition and organ tissue weights. Journal of Dairy Science. 87(11):3869-3880.OXIDATION OF GLUCOSE, GLUTAMATE, AND GLUTAMINE BY ISOLATED OVINE ENTEROCYTES IN VITRO IS DECREASED BY PRESENCE OF OTHER METABOLIC FUELS

- (Peer Reviewed Journal)Oba, M., Baldwin, R.L., Bequette, B.J. 2004. Oxidation of glucose, glutamate, and glutamine by isolated ovine enterocytes in vitro is decreased by presence of other metabolic fuels. Journal of Dairy Science. 82(2):479-486.UREA SYNTHESIS BY RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS FROM GROWING SHEEP

- (Peer Reviewed Journal)Oba, M., Baldwin, R.L., Owens, S.L., Bequette, B.J. 2004. Urea synthesis by ruminal epithelial and duodenal mucosal cells from growing sheep. Journal of Dairy Science. 87(6):1803-1805.RUMEN DEVELOPMENT, INTESTINAL GROWTH AND HEPATIC METABOLISM IN THE PRE-AND POST-WEANING RUMINANT

- (Review Article)Baldwin, R.L., Mcleod, K.R., Klotz, J.L., Heitmann, R.N. 2004. Rumen development, intestinal growth and hepatic metabolism in the pre-and post-weaning ruminant. Journal of Dairy Science. 87:E. Suppl.:E55-E65.INFLUENCE OF SUBTHERAPEUTIC CHLORTETRACYCLINE AND DIETARY PROTEIN ON CIRCULATING CONCENTRATION OF INSULIN-LIKE GROWTH FACTOR-1 IN GROWING BEEF STEERS

- (Peer Reviewed Journal)McLeod, K.R., Baldwin, R.L., Rumsey, T.S., Elsasser, T.H., Kahl, S., Streeter, M.N. 2003. Influence of subtherapeutic chlortetracycline and dietary protein on circulating concentration of insulin-like growth factor-1 in growing beef steers. Journal of Animal and Veterinary Advances. 2:531-35.OXIDATION OF GLUCOSE, GLUTAMATE, AND GLUTAMINE BY ISOLATED OVINE ENTEROCYTES IN VITRO IS DECREASED BY PRESENCE OF OTHER METABOLIC FUELS

- (Abstract Only)Baldwin, R.L., Bequette, B.J., Oba, M.,  2003. Oxidation of glucose, glutamate, and glutamine by isolated ovine enterocytes in vitro is decreased by presence of other metabolic fuels [abstract]. Journal of Dairy Science 86(suppl. 1):226.UREA SYNTHESIS BY RUMINAL EPITHELIAL AND DUODENAL MUCOSAL CELLS ISOLATED FROM GROWING SHEEP

- (Abstract Only)Baldwin, R.L., Bequette, B.J., Oba, M., Owens, S.L.,  2003. Urea synthesis by ruminal epithelial and duodenal mucosal cells isolated from growing sheep [abstract]. Journal of Dairy Science 86(Suppl. 1):59.INFLUENCE OF ABOMASAL CARBOHYDRATES ON SMALL INTESTINAL SODIUM-DEPENDENT GLUCOSE CO-TRANSPORTER ACTIVITY AND ABUNDANCE IN STEERS

- (Abstract Only)Baldwin, R.L., Rodriquez, S.M., Guimaraes, K.C., Mathews, J.C., Mcleod, K.R., Harmon, D.L.,  2003. Influence of abomasal carbohydrates on small intestinal sodium-dependent glucose co-transporter activity and abundance in steers [abstract]. Journal of Dairy Science 86 (Suppl. 1):266.VISCERAL TISSUE GROWTH AND PROLIFERATION DURING THE BOVINE LACTATION CYCLE

- (Peer Reviewed Journal)Baldwin, R.L., Mcleod, K.R., Capuco, A.V. 2004. Visceral tissue growth and proliferation during the bovine lactation cycle. Journal of Dairy Science.87:2977-2986.EFFECTS OF INTESTINAL DEVELOPMENT ON CALF GROWTH

- (Abstract Only)Baldwin, R.L., Mcleod, K., Heitman, R., Klotz, J.,  2003. Effects of intestinal development on calf growth [abstract. Journal of Dairy Science 86(suppl. 1):136EFFECTS OF RUMINAL AND POST RUMINAL INFUSION OF STARCH HYDROLYSATE OR GLUCOSE ON THE MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT IN GROWING STEERS

- (Abstract Only)Van Kessel, J.S., Nedoluha, P.C., Williams-Campbell, A., Baldwin, Vi, R.L., Mcleod, K.R. 2004. Effects of ruminal and post ruminal infusion of starch hydrolysate or glucose on the microbial ecology of the gastrointestinal tract in growing steers. Meeting Abstract. p.236.EFFECTS OF RUMINAL AND POST-RUMINAL INFUSION OF STARCH HYDROLYSATE OR      GLUCOSE ON THE MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT IN GROWING  STEERS

- (Peer Reviewed Journal)VAN KESSEL, J.S., NEDOLUHA, P.C., WILLIAMS CAMPBELL, A.M., BALDWIN, R.L., MCLEOD, K.R. EFFECTS OF RUMINAL AND POST-RUMINAL INFUSION OF STARCH HYDROLYSATE OR GLUCOSE ON THE MICROBIAL ECOLOGY OF THE GASTROINTESTINAL TRACT IN GROWING STEERS. JOURNAL OF ANIMAL SCIENCE. 2002. pp. 3027-3034.EFFECT OF STAGE OF LACTATION ON VISCERAL TISSUE MASS AND INTESTINAL PROLIFERATION

- (Abstract Only)BALDWIN, R.L., CAPUCO, A.V., MCLEOD, K. EFFECT OF STAGE OF LACTATION ON VISCERAL TISSUE MASS AND INTESTINAL PROLIFERATION. JOURNAL OF DAIRY SCIENCE. 2002.INFLUENCE OF RUMINAL AND POSTRUMINAL CARBOHYDRATE INFUSION ON VISCERAL ORGAN MASS AND ADIPOSE TISSUE ACCRETION IN GROWING BEEF STEERS.

- (Abstract Only)BALDWIN, R.L., MCLEOD, K., CAPUCO, A.V., SOLOMON, M.B., HARMON, D. INFLUENCE OF RUMINAL AND POSTRUMINAL CARBOHYDRATE INFUSION ON VISCERAL ORGAN MASS AND ADIPOSE TISSUE ACCRETION IN GROWING BEEF STEERS. JOURNAL OF ANIMAL SCIENCE. 2002.EVALUATION OF PRIMARY RUMEN EPITHELIAL CELL INCUBATION TECHNIQUES IN SHEEP

- (Peer Reviewed Journal)GILLIS, R.C., KLOTZ, J.L., BALDWIN, R.L., HEITMANN, R.N. EVALUATION OF PRIMARY RUMEN EPITHELIAL CELL INCUBATION TECHNIQUES IN SHEEP. SMALL RUMINANT RESEARCH. 2002.EFFECT OF INCREASING RUMINALLY DEGRADED PROTEIN ON LACTATION PERFORMANCE OF DAIRY COWS

- (Peer Reviewed Journal)DEVELOPMENTAL CHANGES IN KETOGENIC ENZYME GENE EXPRESSION DURING SHEEP     RUMEN DEVELOPMENT

- (Peer Reviewed Journal)BALDWIN, R.L., LANE, M.A., JESSE, B.W. DEVELOPMENTAL CHANGES IN KETOGENIC ENZYME GENE EXPRESSION DURING SHEEP RUMEN DEVELOPMENT. JOURNAL OF ANIMAL SCIENCE. 2002. vol. 80(6), pp. 1538-44.RUMINAL FERMENTATION AND INTESTINAL FLOW OF NUTRIENTS BY LACTATING COWS CONSUMING BROWN MIDRIB CORN SILAGES

- (Peer Reviewed Journal)Greenfield, T.L., Baldwin, R.L., Erdman, R.A., Mcleod, K.R. 2001. Ruminal fermentation and intestinal flow of nutrients by lactating cows consuming brown midrib corn silages. Journal of Dairy Science. 84(11):2469-2477.MAMMARY CELL NUMBER, PROLIFERATION AND APOPTOSIS DURING THE BOVINE   LACTATION CYCLE: RELATION TO MILK PRODUCTION AND EFFECT OF BST

- (Peer Reviewed Journal)Capuco, A.V., Wood, D.L., Baldwin, R.L., Mcleod, K.R., Paape, M.J. 2001. Mammary cell number, proliferation and apoptosis during the bovine   lactation cycle: relation to milk production and effect of bst. Journal of Dairy Science. 84(10):2177-2187.EFFECTS OF ADDED RUMEN UNDEGRADED PROTEIN AND BOVINE SOMATOTROPIN          ADMINISTRATION ON ORGAN AND TISSUE WEIGHTS IN PREPUBRTAL DIARY HEIFERS.

- (Abstract Only)MOALLEM, U., DAHL, G.E., CAPUCO, A.V., BALDWIN, R.L., ERDMAN, R.A. EFFECTS OF ADDED RUMEN UNDEGRADED PROTEIN AND BOVINE SOMATOTROPIN ADMINISTRATION ON ORGAN AND TISSUE WEIGHTS IN PREPUBRTAL DIARY HEIFERS. JOINT ABSTRACTS OF THE AMERICAN DAIRY SCIENCE AND SOCIETY OF ANIMAL SCIENCE. 2001.EFFECTS OF BROWN MIDRIB CORN SILAGE ON THE ENERGY BALANCE OF DAIRY CATTLE

- (Peer Reviewed Journal)INFLUENCE OF RUMINAL OR POSTRUMINAL STARCH INFUSION ON ENERGY BALANCE IN   GROWING BEEF STEERS.

- (Peer Reviewed Journal)GLUCOSE OXIDATION BY ISOLATED STEER DUODENAL ENTEROCYTES IN VITRO

- (Proceedings)Baldwin, R.L., Mcleod, K.R. 2001. Glucose oxidation by isolated steer duodenal enterocytes in vitro. Proceedings of the Energy Metabolism of Farm Animals. p. 217-220.GLUCOSE OXIDATION BY ISOLATED STEER DUODENAL ENTEROCYTES IN VITRO

- (Abstract Only)INFLUENCE OF CHLORTETRACYCLINE AND DIETARY PROTEIN LEVEL ON VISCERAL ORGAN MASS OF GROWING BEEF STEERS

- (Peer Reviewed Journal)REFINEMENTS IN PRIMARY RUMEN EPITHELIAL CELL CULTURE TECHNIQUES

- (Peer Reviewed Journal)MINIMIZING NUTRIENT EXCRETION FROM DAIRY CATTLE AND REDUCING THE           ENVIRONMENTAL IMPACTS OF MANURE NUTRIENTS

- (Abstract Only)EFFECTS OF DIET FORAGE-TO-CONCENTRATE RATIO AND METABOLIZABLE ENERGY INTAKEON VISCERAL ORGAN GROWTH AND IN VITRO OXIDATIVE CAPACITY OF GUT TISSUES IN SHEEP

- (Peer Reviewed Journal)EFFECTS OF DIET FORAGE-TO-CONCENTRATE RATIO AND METABOLIZABLE ENERGY INTAKEON ISOLAGED RUMEN EPITHELIAL CELL SUBSTRATE METABOLISM IN VITRO

- (Peer Reviewed Journal)SHEEP INTESTINAL DEVELOPMENT IN RESPONSE TO DIFFERENT DIETARY TREATMENTS

- (Peer Reviewed Journal)EFFECTS OF ORAL CHLORTESTRACYCLINE (CTC) AND DIETARY PROTEIN LEVEL ON      PLASMA CONCENTRATIONS OF GROWTH HORMONE AND THYROID HORMONES IN BEEF STEERSBEFORE AND AFTER CHALLENGE WITH A COMBO OF THYROTROPIN RELEASING HORMONE

- (Peer Reviewed Journal)INFLUENCE OF CHLORTETRACYCLINE AND DIETARY PROTEIN LEVEL ON PLASMA         SOMATOMEDIN-C CONCENTRATION, PERFORMANCE, VISCERAL ORGAN MASS, AND CARCASS MERIT OF GROWING BEEF STEERS

- (Abstract Only)CHLORTETRACYCLINE AFFECTS PLASMA GROWTH HORMONE AND THROID HORMONES IN BEEFSTEERS AFTER CHALLENGE WITH THYROTROPIN RELEASING HORMONE PLUS GROWTH      HORMONE RELEASING HORMONE

- (Abstract Only)PLASMA IGF-1 CONCENTRATIONS, PERFORMANCE, AND CARCASS MERIT OF GROWING BEEFSTEERS FED A SUB-THERAPEUTIC LEVEL OF CHLORTETRACYCLINE AND TWO DIETARY    PROTEIN LEVELS

- (Peer Reviewed Journal)INFLUENCE OF ENERGY DENSITY AND METABOLIZABLE ENERGY INTAKE ON SUBSTRATE   METABOLISM BY RUMINAL EPITHELIAL CELLS ISOLATED FROM SHEEP

- (Proceedings)INFLUENCE OF ENERGY DENSITY AND METABOLIZABLE ENERGY INTAKE ON VISCERAL    ORGAN GROWTH IN SHEEP.

- (Peer Reviewed Journal)IN VITRO RUMEN FERMENTATION CHARACTERISTICS OF CONTINUOUS CULTURE RUMEN    FERMENTORS FED A SUB-THERAPEUTIC LEVEL OF CHLORTETRACYCLINE AND TWO DIETARYPROTEIN LEVELS.

- (Abstract Only)INFLUENCE OF ENERGY DENSITY AND METABOLIZABLE ENERGY INTAKE ON SUBSTRATE   METABOLISM BY RUMINAL AND DUODENAL EPITHELIAL CELLS ISOLATED FROM SHEEP.

- (Abstract Only)INFLUENCE OF ENERGY DENSITY AND METABOLIZABLE ENERGY INTAKE ON VISCERAL    ORGAN GROWTH IN SHEEP.

- (Abstract Only)USE OF ISIOLATED RUMINAL EPITHELIAL CELLS IN THE STUDY OF RUMEN METABOLISM.

- (Peer Reviewed Journal)IN VITRO RUMEN FERMENTATION CHARACTERISTICS OF CONTINUOUS CULTURE RUMEN    FERMENTORS FED A SUB-THERAPEUTIC LEVEL OF CHLORTETRACYCLINE AND TWO DIETARYPROTEIN LEVELS.

- (Peer Reviewed Journal)IDENTIFICATION OF TWO CDNA CLONES ENCODING SMALL PROLINE-RICH PROTEINS     EXPRESSED IN SHEEP RUMINAL EPITHELIUM

- (Peer Reviewed Journal)THE EFFECT OF VOLATILE FATTY ACID ADMINISTRATION ON SHEEP RUMINAL AND      INTESTINAL PHYSICAL DEVELOPMENT

- (Abstract Only)


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