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                    U.S. DEPARTMENT OF AGRICULTURE
 Plant Germplasm Introduction and Testing Research: Pullman, WA
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ARS Home Pacific West Area Pullman, Washington Plant Germplasm Introduction and Testing Research People & Locations







Clarice J Coyne

(Clare)
                        Plant Germplasm Introduction and Testing Research

                        




                        
                        Research Geneticist
                        Phone: (509) 335-3878
                        
                        
                        Fax: (509) 335-6654(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsGenetic Resource and Information Management for Pulse, Temperate Forage Legume, Oilseed, Vegetable, Grasses, Sugar, Ornamental, and Other Crops
                                                    In-House Appropriated
                                                                    (D)Accession Number: 443951MP3: More Protein, More Peas, More Profit (MSU)
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 440749Targeted Genomic Assisted Improvement of Seed Protein Concentration
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 442624Evaluation and Genome-wide Association Study for Ashy Stem Blight Resistance in USDA Common Bean (Phaseolus vulgaris) Germplasm
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 442673**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Editorial: Legume root diseases
                                                        

- (Peer Reviewed Journal)Pilet-Nayel, M., Coyne, C.J., Le May, C., Banniza, S. 2024. Editorial: Legume root diseases. Frontiers in Plant Science. 15:1393326. https://doi.org/10.3389/fpls.2024.1393326.Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea (Cicer arietinum)

- (Peer Reviewed Journal)Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh
                                                        

- (Peer Reviewed Journal)Guerra-Garcia, A., Trnený, O., Brus, J., Renzi, J., Kumar, S., Bariotakis, M., Coyne, C.J., Chitikineni, A., Bett, K.E., Varshney, R., Pirintsos, S., Berger, J., Von Wettberg, E., Smýkal, P. 2024. Genetic structure and ecological niche space of lentil’s closest wild relative, Lens orientalis (Boiss.) Schmalh. Plant Biology. e13615. https://doi.org/10.1111/plb.13615.Kabuli chickpea seed quality diversity and preliminary genome-wide association study identifies markers and potential candidate genes
                                                        

- (Peer Reviewed Journal)Mugabe, D., Frieszell, C., Warburton, M.L., Coyne, C.J., Sari, H., Uhdre, R., Wallace, L.T., Ma, Y., Zheng, P., McGee, R.J., Ganjyal, G. 2023. Kabuli chickpea seed quality diversity and preliminary genome-wide association study identifies markers and potential candidate genes. Agrosystems, Geosciences & Environment. 6(4):e20437. https://doi.org/10.1002/agg2.20437.A hypervariable intron of the STAYGREEN locus provides discrimination among Pisum fulvum accessions and reveals evidence for a relatively recent hybridization event with Pisum sativum
                                                        

- (Peer Reviewed Journal)Weeden, N., Lavin, M., Abbo, S., Coyne, C.J., McPhee, K. 2023. A hypervariable intron of the STAYGREEN locus provides discrimination among Pisum fulvum accessions and reveals evidence for a relatively recent hybridization event with Pisum sativum. Frontiers in Plant Science. 14:1233280. https://doi.org/10.3389/fpls.2023.1233280.Impacts of germplasm characterization and candidate gene discovery
                                                        

- (Book / Chapter)Sari, H., Ma, Y., Mangat, P., Uhdre, R., Salia, O., Riaz, F., Mcgee, R.J., Warburton, M.L., Coyne, C.J. 2024. Impacts of germplasm characterization and candidate gene discovery. In: Kumar, J. Gupta, D.S. Kumar, S. Editors. The Lentil Genome, United Kingdom: Academic Press, p.247-265. https://doi.org/10.1016/B978-0-443-19409-2.00017-X.Spectral indices for characterizing lentil accessions in the dryland of Pacific Northwest
                                                        

- (Peer Reviewed Journal)Amin, M.N., Islam, M.M., Coyne, C.J., Carpenter-Boggs, L., McGee, R.J. 2023. Spectral indices for characterizing lentil accessions in the dryland of Pacific Northwest. Genetic Resources and Crop Evolution. https://doi.org/10.1007/s10722-023-01614-8.Plant Exploration, the why of the Frank N. Meyer Medal
                                                        

- (Popular Publication)Coyne, C.J., Eizenga, G.C., Warburton, M.L., Liu, S. 2023. Plant Exploration, the why of the Frank N. Meyer Medal. CSSA Special Publications. 68(5):42-44. https://doi.org/10.1002/csan.21020.Inclusive collaboration across plant physiology and genomics: now is the time!
                                                        

- (Other)Baxter, I., Ainsworth, E.A., Brooks, M.D., Castano-Duque, L.M., Londo, J.P., Washburn, J.D., McElrone, A.J., Coyne, C.J., et al. 2023. Inclusive collaboration across plant physiology and genomics: now is the time! Plant Direct. 7(5). Article e493. https://doi.org/10.1002/pld3.493.Resistance in pea (Pisum sativum) genetic resources to the pea aphid, Acyrthosiphon pisum
                                                        

- (Peer Reviewed Journal)Rahman, M.M., Porter, L.D., Ma, Y., Coyne, C.J., Zheng, P., Chaves-Cordoba, B., Naidu, R.A. 2023. Resistance in pea (Pisum sativum) genetic resources to the pea aphid, Acyrthosiphon pisum. Entomologia Experimentalis et Applicata. 171(6):435-448. https://doi.org/10.1111/eea.13296.Multi-trait genomic prediction improves selection accuracy for enhancing seed mineral concentrations in pea (Pisum sativum L.)
                                                        

- (Peer Reviewed Journal)Atanda, S.A., Steffes, J., Lan, Y., Al Bari, M., Kim, J., Morales, M., Johnson, J., Saludares, R.A., Worral, H., Piche, L., Ross, A., Grusak, M.A., Coyne, C.J., McGee, R.J., Rao, J., Bandillo, N. 2022. Multi-trait genomic prediction improves selection accuracy for enhancing seed mineral concentrations in pea (Pisum sativum L.). The Plant Genome. 2022. Article e20260. https://doi.org/10.1002/tpg2.20260.How could the use of crop wild relatives in breeding increase the adaptation of crops to marginal environments?
                                                        

- (Peer Reviewed Journal)Renzi, J.P., Coyne, C.J., Berger, J., von Wettberg, E., Nelson, M., Ureta, S., Hernandez, F., Smykal, P., Brus, J. 2022. How could the use of crop wild relatives in breeding increase the adaptation of crops to marginal environments? Frontiers in Plant Science. 13. Article 886162. https://doi.org/10.3389/fpls.2022.886162. [Corrigendum: Frontiers in Plant Science: 2022, 13, Article 1101822.]Resistance in lentil (Lens culinaris) genetic resources to the pea aphid (Acyrthosiphon pisum)
                                                        

- (Peer Reviewed Journal)Das, S., Porter, L.D., Ma, Y., Coyne, C.J., Chaves-Cordoba, B., Naidu, R.A. 2022. Resistance in lentil (Lens culinaris) genetic resources to the pea aphid (Acyrthosiphon pisum). Entomologia Experimentalis et Applicata. 170(8):755-769. https://doi.org/10.1111/eea.13202.Phenotypic and genetic characterization of the lentil single plant-derived core collection for resistance to root rot caused by Fusarium avenaceum
                                                        

- (Peer Reviewed Journal)Heineck, G.C., Altendorf, K.R., Coyne, C.J., Ma, Y., McGee, R.J., Porter, L.D. 2022. Phenotypic and genetic characterization of the lentil single plant-derived core collection for resistance to root rot caused by Fusarium avenaceum. Phytopathology. 112(9):1979-1987. https://doi.org/10.1094/PHYTO-12-21-0517-R.Pea seed protein concentrations in USDA plant genetic resources

- (Abstract Only)Rain in the desert: Bringing machine learning to pulse genetic resources

- (Abstract Only)Harnessing genetic diversity in the USDA Pea Germplasm Collection through genomic prediction
                                                        

- (Peer Reviewed Journal)Al Bari, M., Zheng, P., Viera, I., Worral, H., Szwiec, S., Ma, Y., Main, D., Coyne, C.J., McGee, R.J., Bandillo, N. 2021. Harnessing genetic diversity in the USDA Pea Germplasm Collection through genomic prediction. Frontiers in Genetics. 12. Article 707754. https://doi.org/10.3389/fgene.2021.707754.Integrating genomic and phenomic approaches to support plant genetic resources conservation and use
                                                        

- (Peer Reviewed Journal)Volk, G.M., Byrne, P.F., Coyne, C.J., Flint Garcia, S.A., Reeves, P.A., Richards, C.M. 2021. Integrating genomic and phenomic approaches to support plant genetic resources conservation and use. Plants. 10(11). Article e2260. https://doi.org/10.3390/plants10112260.Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species
                                                        

- (Pre-print Publication)Ramsay, L., Koh, C., Kagale, S., Gao, D., Kaur, S., Haile, T., Gela, T., Chen, L., Cao, Z., Konkin, D., Toegelova, H., Doležel, J., Rosen, B.D., Stonehouse, R., Humann, J., Main, D., Coyne, C.J., Mcgee, R.J., Cook, D., Penmetsa, V., Vandenberg, A., Chan, C., Banniza, S., Edwards, D., Bayer, P., Batley, J., Udupa, S., Bett, K.E. 2021. Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species. bioRxiv. https://doi.org/10.1101/2021.07.23.453237.Distinguishing among Pisum accessions using a hypervariable intron within Mendel’s green/yellow cotyledon gene
                                                        

- (Peer Reviewed Journal)Weeden, N., Coyne, C.J., Lavin, M., McPhee, K. 2021. Distinguishing among Pisum accessions using a hypervariable intron within Mendel’s green/yellow cotyledon gene. Genetic Resources and Crop Evolution. 68:2591-2609. https://doi.org/10.1007/s10722-021-01152-1.Genetic diversity and GWAS of agronomic traits using an ICARDA lentil (Lens culinaris Medik.) Reference Plus collection
                                                        

- (Peer Reviewed Journal)Rajendran, K., Coyne, C.J., Zheng, P., Saha, G., Main, D., Amin, N., Ma, Y., Kisha, T.J., Bett, K., Kumar Agrawal, S., McGee, R.J. 2021. Genetic diversity and GWAS of agronomic traits using an ICARDA lentil (Lens culinaris Medik.) Reference Plus collection. Plant Genetic Resources. 1-10. https://doi.org/10.1017/S147926212100006X.Understanding photothermal interactions will help expand production range and increase genetic diversity of lentil (Lens culinaris Medik.)
                                                        

- (Peer Reviewed Journal)Wright, D., Neupane, S., Heidecker, T., Haile, T., Coyne, C.J., McGee, R.J., Udupa, S., Henkrar, F., Barilli, E., Rubiales, D., Gioia, T., Mehra, R., Sarker, A., Dhakal, R., Anwar, B., Sarker, D., Vandenberg, A., Bett, K.E. 2020. Understanding photothermal interactions will help expand production range and increase genetic diversity of lentil (Lens culinaris Medik.). Plants, People, Planet. 3(2):171-181. https://doi.org/10.1002/ppp3.10158.Limited divergent adaptation despite a substantial environmental cline in wild pea
                                                        

- (Peer Reviewed Journal)Hellwig, T., Abbo, S., Sherman, A., Coyne, C.J., Saranga, Y., Lev-Yadun, S., Main, D., Zheng, P., Ophir, R. 2020. Limited divergent adaptation despite a substantial environmental cline in wild pea. Molecular Ecology. 29(22):4322-4338. https://doi.org/10.1111/mec.15633.Environmental and genetic determinants of amphicarpy in Pisum fulvum, a wild relative of domesticated pea
                                                        

- (Peer Reviewed Journal)Hellwig, T., Flor, A., Saranga, Y., Coyne, C.J., Main, D., Sherman, A., Ophir, R., Abbo, S. 2020. Environmental and genetic determinants of amphicarpy in Pisum fulvum, a wild relative of domesticated pea. Plant Science. 298. https://doi.org/10.1016/j.plantsci.2020.110566.Dissecting genetic architecture of Aphanomyces root rot resistance in lentil by QTL mapping and genome-wide association
                                                        

- (Peer Reviewed Journal)Ma, Y., Coyne, C.J., Sankaran, S., Main, D., Porter, L.D., Mugabe, D., Smitchger, J., Zhang, C., Amin, M., Fasheed, N., Ficklin, S., McGee, R.J. 2020. Dissecting genetic architecture of Aphanomyces root rot resistance in lentil by QTL mapping and genome-wide association. International Journal of Molecular Sciences. 21(6):2129. https://doi.org/10.3390/ijms21062129.Potential and limits of exploitation of crop wild relatives for pea, lentil and chickpea improvement
                                                        

- (Peer Reviewed Journal)Coyne, C.J., Kumar, S., Von Wettberg, E., Marques, E., Berger, J., Redden, R., Ellis, N., Brus, J., Zablatzká, L., Smykal, P. 2020. Potential and limits of exploitation of crop wild relatives for pea, lentil and chickpea improvement. Legume Science. 2(2):1-25. https://doi.org/10.1002/leg3.36.The future of legume genetic data resources: Challenges, opportunities, and priorities
                                                        

- (Peer Reviewed Journal)Bauchet, G., Bett, K.E., Cameron, C.T., Campbell, J.D., Cannon, E., Cannon, S.B., Carlson, J., Chan, A., Cleary, A., Close, T., Cook, D., Cooksey, A., Coyne, C.J., Dash, S., Dickstein, R., Farmer, A., Fernandez-Baca, D., Hokin, S., Jones, E., Kang, Y., Monteros, M., Munoz-Amatriain, M., Mysore, K., Pislariu, C., Richards, C.M., Shi, A., Town, C., Udvardi, M., Wettberg, E., Young, N., Zhao, P. 2019. The future of legume genetic data resources: Challenges, opportunities, and priorities. Legume Science. 1(1):e16. https://doi.org/10.1002/leg3.16.Fingerprinting pea varieties using genes of interest to breeders and extending the variation within the green/yellow cotyledon color gene (I) to wild germplasm

- (Abstract Only)Building a better lentil from the ground up

- (Abstract Only)Integration of traditional and image-based phenotyping tools to identify QTL for Aphanomyces root rot resistance in lentil

- (Abstract Only)The Pulse Crop Database:  Expanding the cool season food legume database into a resource for pulse crop discovery and improvement

- (Abstract Only)A reference genome for pea provides insight into legume genome evolution
                                                        

- (Peer Reviewed Journal)Kreplak, J., Madoui, M., Capal, P., Novak, P., Labadie, K., Aubert, G., Bayer, P., Krishna-Kishore, G., Symes, R.A., Main, D., Klein, A., Berard, A., Fukova, I., Fournier, C., D'Agata, L., Belser, C., Berrabah, W., Simkova, H., Lee, H.T., Kougbead, A., Terezol, M., Huneau, C., Turo, C.J., Mohellibi, N., Neumann, P., Falque, M., Gallardo-Guerrero, K., McGee, R.J., Tar'An, B., Bendahmane, A., Aury, J., Batley, J., Le Paslier, M., Ellis, T., Warkentin, T., Coyne, C.J., Salse, J., Edwards, D., Lichtenzveig, J., Macas, J., Dolezel, J., Wincker, P., Burstin, J. 2019. A reference genome for pea provides insight into legume genome evolution. Nature Genetics. 51:1411-1422. https://doi.org/10.1038/s41588-019-0480-1.Pea seed protein concentration: GWAS approach utilizing Pea Core Plus Collection

- (Abstract Only)The molecular mechanisms underlying plant vernalization revealed by systems analysis of transcriptomes in chickpea and related species

- (Abstract Only)Confirmation of Fusarium root rot resistance QTL Fsp-Ps 2.1 of pea under controlled conditions
                                                        

- (Peer Reviewed Journal)Coyne, C.J., Porter, L.D., Boutet, G., Ma, Y., McGee, R.J., Lesné, A., Baranger, A., Pilet-Nayal, M. 2019. Confirmation of Fusarium root rot resistance QTL Fsp-Ps 2.1 of pea under controlled conditions. Biomed Central (BMC) Plant Biology. 19:98(2019). https://doi.org/10.1186/s12870-019-1699-9.Quantitative trait loci for cold tolerance in chickpea
                                                        

- (Peer Reviewed Journal)Mugabe, D., Coyne, C.J., Piakowski, J., Zheng, P., Ma, Y., McGee, R.J., Main, D., Vandemark, G.J., Zhang, H., Abbo, S. 2018. Quantitative trait loci for cold tolerance in chickpea. Crop Science. 59(2):573–582. https://doi.org/10.2135/cropsci2018.08.0504.Molecular evidence for two domestication events in the pea crop
                                                        

- (Peer Reviewed Journal)Trneny, O., Brus, J., Hradilova, I., Rathore, A., Das, R., Kopecky, P., Coyne, C.J., Reeves, P.A., Richards, C.M., Smykal, P. 2018. Molecular evidence for two domestication events in the pea crop. Genes. 9(11). https://doi.org/10.3390/genes9110535.Frank Meyer - an early plant explorer

- (Popular Publication)Coyne, C.J. 2018. Frank N. Meyer, Plant Explorer. Crop Science Society of America. https://sustainable-secure-food-blog.com/2018/09/21/frank-meyer-and-early-plant-explorer/.Independent selection for seed free tryptophan content and vernalization response in chickpea domestication
                                                        

- (Peer Reviewed Journal)Pinhasi Van-Oss, R., Gopher, A., Kerem, Z., Sherman, A., Zhang, H., Coyne, C.J., Vandemark, G.J., Reamy, O., Abbo, S. 2018. Independent selection for seed free tryptophan content and vernalization response in chickpea domestication. Plant Breeding. 137(3):290-300. https://doi.org/10.1111/pbr.12598.Enhancing faba bean (Vicia faba L.) germplasm for resilience to temperature extremes

- (Abstract Only)Genome wide association studies on yield components using a lentil genetic diversity panel

- (Abstract Only)Harvesting Legume Genomes: Plant Genetic Resources

- (Abstract Only)Characterizing Chickpeas for End Use Characteristics

- (Abstract Only)Wild relatives of domesticated pea in the Mediterranean Region and the Fertile Crescent will respond to global climate change

- (Abstract Only)KASP assays for powdery mildew resistance breeding in pea

- (Abstract Only)The Pisum Genus: Getting out of Pea Soup!

- (Abstract Only)Genomic diversity and macroecology of the crop wild relatives of domesticated pea

- (Peer Reviewed Journal)Smykal, P., Hradilová, I., Trnený, O., Brus, J., Rathore, A., Bariotakis, M., Das, R., Bhattacharyya, D., Richards, C.M., Coyne, C.J., Pirintsos, S. 2017. Genomic diversity and macroecology of the crop wild relatives of domesticated pea. Nature Scientific Reports. doi:10.1038/s41498-017-17623-4.Development and validation of breeder-friendly KASPar markers for er1, a powdery mildew resistance gene in pea (Pisum sativum L.)
                                                        

- (Peer Reviewed Journal)Ma, Y., Coyne, C.J., Main, D., Pavan, S., Sun, S., Zhu, Z., Zong, X., Leitao, J., McGee, R.J. 2017. Development and validation of breeder-friendly KASPar markers for er1, a powdery mildew resistance gene in pea (Pisum sativum L.). Molecular Breeding. 37:151. https://doi.org/10.1007/s11032-017-0740-7.Updates to the Cool Season Food Legume Genome Database: Resources for pea, lentil,
faba bean and chickpea genetics, genomics and breeding

- (Abstract Only)Seventeen years of research on genetics of resistance 
to Aphanomyces root rot of pea

- (Abstract Only)Identification of quantitative trait loci (QTL) controlling cold tolerance in chickpea recombinant RIL population (CRIL2) from Cicer arietinum L. x Cicer reticulatum

- (Abstract Only)Selecting lentil accessions for global selenium biofortification
                                                        

- (Peer Reviewed Journal)Thavarajah, D., Abare, A., Mapa, I., Coyne, C.J., Kumar, S., Pushparajah, T. 2017. Selecting lentil accessions for global selenium biofortification. Plants. 6(3):34. https://doi.org/10.3390/plants6030034.Harvesting the Pea Genome: Association Mapping of the Pisum Single Plant Plus Collection

- (Abstract Only)Association mapping of variation in starch chain length distribution in pea (Pisum sativum L.) using carbohydrate and starch metabolism candidate genes

- (Peer Reviewed Journal)Carpenter, M.A., Cooper, R., Frew, T.J., Butler, R.C., Murray, S.R., Moya, L., Coyne, C.J., Timmerman-Vaughan, G. 2017. Association mapping of variation in starch chain length distribution in pea (Pisum sativum L.) using carbohydrate and starch metabolism candidate genes. Biomed Central (BMC) Plant Biology 17:132. DOI 10.1186/s12870-017-1080-9.A community resource for exploring and utilizing genetic diversity in the USDA Pea Single Plant Plus Collection

- (Peer Reviewed Journal)Holdsworth, W.L., Gazave, E., Cheng, P., Myers, J.R., Gore, M.A., Coyne, C.J., McGee, R.J., Mazourek, M. 2017. A community resource for exploring and utilizing genetic diversity in the USDA Pea Single Plant Plus Collection. Horticulture Research. doi: 10.1038/hortres.2017.17.A modified mass selection scheme for creating winter-hardy faba bean (Vicia faba L.) lines with a broad genetic base
                                                        

- (Peer Reviewed Journal)Landry, E.J., Coyne, C.J., Mcgee, R.J., Hu, J. 2017. A modified mass selection scheme for creating winter-hardy faba bean (Vicia faba L.) lines with a broad genetic base. Journal of Euphytica. 213:72. https://doi.org/10.1007/s10681-017-1843-2.Genome-wide SNP identification, linkage map construction and QTL mapping for mineral nutrient concentrations and contents in pea (Pisum sativum L.)

- (Peer Reviewed Journal)Ma, Y., Grusak, M.A., Cheng, P., Mazourek, M., Coyne, C.J., Main, D., McGee, R.J. 2017. Genome-wide SNP identification, linkage map construction and QTL mapping for mineral nutrient concentrations and contents in pea (Pisum sativum L.). Biomed Central (BMC) Plant Biology. doi: 10.1186/s12870-016-0956-4.From Mendel’s discovery on pea to today ́s plant genetics and breeding

- (Peer Reviewed Journal)Smykal, P., Varsheny, R., Singh, V., Coyne, C.J., Domoney, C., Kejnovsky, E., Warkentin, T. 2016. From Mendel’s discovery on pea to today ́s plant genetics and breeding. Theoretical and Applied Genetics. doi: 10.1007/s00122-016-2803-2.Development of SCAR markers linked to sin-2, the stringless pod locus in pea (Pisum sativum L.)

- (Peer Reviewed Journal)Ma, Y., Hu, J., Myers, J., Mazourek, M., Coyne, C.J., Main, D., Wang, M., Humann, J., Mcgee, R.J. 2016. Development of SCAR markers linked to sin-2, the stringless pod locus in pea (Pisum sativum L.). Molecular Breeding. doi: 10.1007/s11032-016-0525-4.Genetic diversity of cultivated lentil (Lens culinaris Medik.) and its relation to the world’s agro-ecological zones
                                                        

- (Peer Reviewed Journal)Khazaei, H., Caron, C., Fedoruk, M., Diapari, M., Vandenberg, A., Coyne, C.J., Mcgee, R.J., Bett, K. 2016. Genetic diversity of cultivated lentil (Lens culinaris Medik.) and its relation to the world’s agro-ecological zones. Frontiers in Plant Science. doi: 10.3389/fpls.2016.01093.Identification of quantitative trait loci controlling root and shoot traits associated to drought tolerance in a lentil (Lens culinaris Medik.) recombinant inbred line population

- (Peer Reviewed Journal)Idrissi, O., Udupa, S.M., De Keyser, E., Mcgee, R.J., Coyne, C.J., Saha, G., Muehlbauer, F., Van Damme, P., De Riek, J. 2016. Identification of quantitative trait loci controlling root and shoot traits associated to drought tolerance in a lentil (Lens culinaris Medik.) recombinant inbred line population. Frontiers in Plant Science. doi: 10.3389/fpls.2016.01174.Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor

- (Peer Reviewed Journal)Penmetsa, R.V., Carrasquilla-Garcia, N., Bergmann, E.M., Vance, L., Castro, B., Kassa, M.T., Sarma, B.K., Datta, S., Farmer, A.D., Baek, J.M., Coyne, C.J., Varshney, R.K., Von Wettberg, E.B., Cook, D.R. 2016. Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor. New Phytologist. 211:1440-1451.Genome wide association study using the ICARDA Lentil Reference set and agronomic data

- (Abstract Only)Taking lentils out of their comfort zone

- (Abstract Only)Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea

- (Peer Reviewed Journal)Desgroux, A., L'Anthoene, V., Roux-Duparque, M., Riviere, J., Aubert, G., Tayeh, N., Moussart, A., Mangin, P., Vetel, P., Pirio, C., Mcgee, R.J., Coyne, C.J., Burstin, J., Baranger, A., Manzanares-Dauleux, M., Bourion, V., Pilet-Nayel, M. 2016. Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea. BMC Genomics. 17:124.Evaluation of common bean (Phaseolus vulgaris L.) collection for agromorphological and seed mineral concentration

- (Peer Reviewed Journal)Adaptation of autumn-sown faba bean germplasm to southeastern  Washington

- (Peer Reviewed Journal)Landry, E.J., Coyne, C.J., Mcgee, R.J., Hu, J. 2016. Adaptation of autumn-sown faba bean germplasm to southeastern  Washington. Agronomy Journal. 108:301–308.Vernalization response of domesticated× wild chickpea progeny is subject to strong genotype by environment interaction

- (Peer Reviewed Journal)Oss, R.P., Sherman, A., Zhang, H., Vandemark, G.J., Coyne, C.J., Abbo, S. 2015. Vernalization response of domesticated× wild chickpea progeny is subject to strong genotype by environment interaction. Plant Breeding. 135:102-110.Genetic relationship in Cicer Sp. expose evidence for geneflow between the cultigen and its wild progenitor
                                                        

- (Peer Reviewed Journal)Van Oss, R., Abbo, S., Eshed, R., Sherman, A., Coyne, C.J., Vandemark, G.J., Zhang, H., Peleg, Z. 2015. Genetic relationship in Cicer Sp. expose evidence for geneflow between the cultigen and its wild progenitor. PLoS One. doi: 10.1371/journal.pone.0139789.Registration of four winter-hardy faba bean germplasm lines for use in winter pulse and cover crop development

- (Peer Reviewed Journal)Landry, E.J., Lafferty, J.E., Coyne, C.J., Pan, W.L., Hu, J. 2015. Registration of four winter-hardy faba bean germplasm lines for use in winter pulse and cover crop development. Journal of Plant Registrations. 9:367–370.Identification of QTL controlling high levels of partial resistance to Fusarium solani f. sp. pisi in pea

- (Peer Reviewed Journal)Coyne, C.J., Pilet-Nayel, M., McGee, R.J., Porter, L., Smykal, P., Grunwald, N.J., Inglis, D. 2015. Identification of QTL controlling high levels of partial resistance to Fusarium solani f. sp. pisi in pea. Plant Breeding. 134:446-453.The International Pea Genome Sequencing Project: Sequencing and Assembly Progresses Updates

- (Abstract Only)Genotyping by sequencing reveals the genetic diversity of the USDA pisum diversity collection

- (Abstract Only)Holdsworth, W., Ma, Y., Cheng, P., Mcgee, R.J., Coyne, C.J., Gore, M., Mazourek, M. 2015. Genotyping by sequencing reveals the genetic diversity of the USDA pisum diversity collection [Abstract]. Plant and Animal Genome Conference. https://pag.confex.com/pag/xxiii/webprogram/Paper14071.html.Agronomic performance of spring-sown Faba bean in Southeastern Washington

- (Peer Reviewed Journal)Landry, E., Hu, J., Coyne, C.J. 2015. Agronomic performance of spring-sown Faba bean in Southeastern Washington. Agronomy Journal. 107:574-578 doi:10.2134/agronj14.0284.Len Gen: The international lentil genome sequencing project

- (Abstract Only)Bett, K., Ramsay, L., Chan, C., Sharpe, A., Cook, D., Penmetsa, V., Chang, P., Coyne, C.J., McGee, R.J., Main, D., Vandenberg, B. 2015. Len Gen: The international lentil genome sequencing project. Plant and Animal Genome Conference. https://pag.confex.com/pag/xxiii/webprogram/Paper14074.html.Pea (Pisum sativum L.)

- (Book / Chapter)Warkentin, T., Smykal, P., Coyne, C.J., Weeden, N., Domoney, C., Bing, D., Leonforte, T., Zong, X., Dixit, G., Boros, L., McPhee, K., McGee, R.J., Burstin, J., Ellis, N. 2014. Pea (Pisum sativum L.). In: A. De Ron (editor) Handbook of Plant Breeding: Grain Legumes. Springer Science and Business Media, New York.Association mapping of agronomic and quality traits in USDA pea single-plant collection

- (Peer Reviewed Journal)Cheng, P., Holdsworth, W., Ma, Y., Coyne, C.J., Mazourek, M., Grusak, M.A., Fuchs, S., Mcgee, R.J. 2015. Phylogenetic analysis and association mapping for agronomic and quality traits in the USDA pea single-plant collection. Molecular Breeding. 35:75. doi: 10.1007/s11032-015-0277-6.Grain legume genetic resources for allele mining

- (Abstract Only)A validated source panel of SSR markers for effective discrimination of lentil species

- (Abstract Only)Large-scale microsatellite development in grasspea (Lathyrus sativus L.), an orphan legume of the arid areas

- (Peer Reviewed Journal)Yang, T., Jiang, J., Burlyaeva, M., Hu, J., Coyne, C.J., Kumar, S., Redden, R., Sun, X., Wang, F., Chang, J., Hao, X., Guan, J., Zong, X. 2014. Large-scale microsatellite development in grasspea (Lathyrus sativus L.), an orphan legume of the arid areas. Biomed Central (BMC) Plant Biology. 14:65.Geographical gradient of the eIF4E alleles conferring resistance to potyviruses in pea (Pisum sp.) germplasm

- (Peer Reviewed Journal)Konecná, E., Šafárová, D., Navrátil, M., Hanácek, P., Coyne, C.J., Flavell, A., Vishyakova, M., Ambrose, M., Redden, R., Smykal, P. 2014. Geographical gradient of the eIF4E alleles conferring resistance to potyviruses in pea (Pisum sp.) germplasm. PLoS One. 9(3):e90394. DOI: 10.1371/journal.pone.0090394.Target region amplification polymorphism (TRAP) for assessing genetic
diversity and marker-trait associations in chickpea (Cicer arietinum l.) germplasm

- (Peer Reviewed Journal)Kumar, Y., Kwon, S.J., Coyne, C.J., Hu, J., Grusak, M.A., Kisha, T.J., Mcgee, R.J., Sarker, A. 2014. Target region amplification polymorphism (TRAP) for assessing genetic diversity and marker-trait associations in chickpea (Cicer arietinum l.) germplasm. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-014-0089-2.Legume crops phylogeny and genetic diversity for science and breeding

- (Peer Reviewed Journal)Smýkal, P., Coyne, C.J., Ambrose, M.J., Maxted, N., Schaefer, H., Blair, M.W., Berger, J., Greene, S.L., Nelson, M.N., Besharat, N., Vymyslický, T., Toker, C., Saxena, R.K., Roorkiwal, M., Pandey, M.K., Hu, J., Li, Y.H., Wang, L.X., Guo, Y., Qiu, L.J., Redden, R.J., Varshney, R.K. 2014. Legume crops phylogeny and genetic diversity for science and breeding. Critical Reviews in Plant Sciences. 34:43-104. doi: 10.1080/07352689.2014.897904.Lentils (Lens culinaris L.), a rich source of folates

- (Peer Reviewed Journal)Sen Gupta, D., Thavarajah, D., Knutson, P., Thavarajah, P., Mcgee, R.J., Coyne, C.J., Kumar, S. 2013. Lentils (Lens culinaris L.), a rich source of folates. Journal of Agricultural and Food Chemistry. 61:7794-7799.User-friendly markers linked to Fusarium wilt race 1 resistance Fw gene for marker-assisted selection in pea

- (Peer Reviewed Journal)Kwon, S.J., Smykal, P., Hu, J., Wang, M., Kim, S., McGee, R.J., McPhee, K., Coyne, C.J. 2013. User-friendly markers linked to Fusarium wilt race 1 resistance Fw gene for marker-assisted selection in pea. Plant Breeding. doi:10.111/pbr.12085.Lentil genetic and genomic resources

- (Book / Chapter)Coyne, C.J., Mcgee, R.J. 2013. Lentil genetic and genomic resources. In:Elsevier Insights, London. p. 157-180.Pea (Pisum sp.) genetic resources, its analysis and exploration

- (Book / Chapter)Smýkal, P., Coyne, C.J., Redden, R., Maxted, N. 2013. Pea (Pisum sp.) genetic resources, its analysis and exploration. In: Plant Germplasm Introduction and Testing. London, United Kingdom: Elsevier Insights. p. 157-180.QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea

- (Peer Reviewed Journal)Hamon, C., Coyne, C.J., Mcgee, R.J., Lesné, A., Esnault, R., Mangin, P., Hervé,, M., Le Goff, I., Deniot, G., Roux-Duparque, M., Morin, G., Mcphee, K. 2013. QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea. Biomed Central (BMC) Plant Biology. 13:45. doi:10.1186/1471-2229-13-45Mycobiota of Lupinus albus seed from a public germplasm collection

- (Peer Reviewed Journal)Alomran, M.M., Lupien, S.L., Coyne, C.J., Dugan, F.M. 2013. Mycobiota of Lupinus albus seed from a public germplasm collection. North American Fungi. 8(4):1-15.Multi-locus molecular phylogeny and allelic variation in a transcription factor gene suggest the multiple independent origins of kabuli chickpea

- (Abstract Only)Penmetsa, R.V., Carrasquilla-Garcia, N., Sarma, B.K., Bergmann, E.M., Vance, L.C., Castro, B.M., Kassa, M.T., Datta, S., Dubey, A., Gujaria, N., Baek, J.M., Woodward, J.E., Farmer, A.D., Coyne, C.J., Wettberg, E.J., Varshney, R.K., Cook, D.R. 2012. Multi-locus molecular phylogeny and allelic variation in a transcription factor gene suggest the multiple independent origins of kabuli chickpea. Meeting Abstract. Proceedings of VI International Legume Genomic & Genetics Conference Oct. 2-7, 2012 Hyderabad, India.Screening for winter-hardiness in a cultivated chickpea/wild relative RIL population

- (Abstract Only)Mcgee, R.J., Piaskowski, J.L., Vandemark, G.J., Zhang, H., Abbo, S., Coyne, C.J. 2012. Screening for winter-hardiness in a cultivated chickpea/wild relative RIL population. Meeting Abstract. ASA-CSSA-SSSA International Annual Meeting, Oct. 21-24, 2012, Cincinnati, OH.Pea (Pisum sativum L.) in the genomics era

- (Peer Reviewed Journal)Smykal, P., Aubert, G., Bustin, J., Coyne, C.J., Ellis, N., Flavell, A., Ford, R., Hybl, M., Macas, J., Mcphee, K., Redden, R., Rubiales, D., Weller, J., Warkentin, T. 2012. Pea (Pisum sativum L.) in the genomics era. Agronomy. 2(2), 74-115.Population structure and linkage disequilibrium in Lupinus albus L. germplasm and its implication for association mapping

- (Peer Reviewed Journal)Iqbal, M.J., Mamidi, S., Ahsan, R., Kianian, S.F., Coyne, C.J., Hamama, A.A., Narina, S.S., Bhardwaj, H.L. 2012. Population structure and linkage disequilibrium in Lupinus albus L. germplasm and its implication for association mapping. Theoretical and Applied Genetics. DOI 10.1007/s00122-012-1850-6.Candidate genes, translational genomics and mapping approaches to identify Ascochyta, mycosphaerella and Fusarium resistance QTLs/genes

- (Abstract Only)Smykal, P., Coyne, C.J. 2012. Candidate genes, translational genomics and mapping approaches to identify Ascochyta, mycosphaerella and Fusarium resistance QTLs/genes. International Ascochyta Workshop. http://www.ascochyta.org/en/index.html.Genetic diversity, population structure and genome-wide marker-trait association analysis of the USDA pea (Pisum sativum L.) core collection

- (Peer Reviewed Journal)Kwon, S.J., Brown, A.F., Hu, J., Mcgee, R.J., Watt, C., Kisha, T.J., Timmerman-Vaughan, G., Grusak, M.A., Mcphee, K., Coyne, C.J. 2012. Genetic diversity, population structure and genome-wide marker-trait association analysis of the USDA pea (Pisum sativum L.) core collection. Genes and Genomics. 10.1007/s13258-011-0213-z.SNP-based genotyping in lentil: linking sequence information with phenotypes

- (Abstract Only)Bett, K., Sharpe, A., Coyne, C.J., Mcgee, R.J., Ramsay, L.D., Clarke, W.E., Sanderson, L., Fedoruk, M., Vandenberg, B. 2012. SNP-based genotyping in lentil: linking sequence information with phenotypes. Meeting Abstract. Plant and Animal Genome XX, San Diego, CA January 14-18, 2012.Registration of Pea Germplasm Partially Resistant to Aphanomyces Root Rot for Breeding Fresh or Freezer Pea and Dry Pea Types

- (Peer Reviewed Journal)Mcgee, R.J., Coyne, C.J., Pilet Nayel, M., Moussart, A., Tivoli, B., Baranger, A., Hamon, C., Mcphee, K., Vandemark, G.J. 2012. Registration of Pea Germplasm Partially Resistant to Aphanomyces Root Rot for Breeding Fresh or Freezer Pea and Dry Pea Types. Journal of Plant Registrations. 6:203-207.Natural outcrossing rate of faba bean under Pullman field conditions and its implication to germplasm management and enhancement

- (Abstract Only)Hu, J., Landry, E.J., Mweng, J.E., Coyne, C.J. 2011. Natural outcrossing rate of faba bean under Pullman field conditions and its implication to germplasm management and enhancement. North American Pulse Improvement Association. Biennial Meeting, Nov 3-4, San Juan, Puerto Rico, USA.Progress report on enhancing faba bean germplasm for improved winter-hardiness at Pullman, Washington

- (Abstract Only)Hu, J., Mcgee, R.J., Landry, E.J., Mweng, J.E., Coyne, C.J. 2011. Progress report on enhancing faba bean germplasm for Improved winter-hardiness at Pullman, Washington. North American Pulse Improvement Association. Biennial Meeting, Nov 3-4, 2011, San Juan, Puerto Rico, USA.Additional pea EST-SSR markers for comparative mapping in pea (Pisum sativum L.)

- (Peer Reviewed Journal)Decarie, J., Coyne, C.J., Brumett, S., Shultz, J. 2011. Additional pea EST-SSR markers for comparative mapping in pea (Pisum sativum L.). Plant Breeding. DOI: 10,1111/j.1439-0523.2011.01917.x.Mendel, 150 years on

- (Peer Reviewed Journal)Ellis, T.N., Hofer, J.M., Timmerman-Vaughan, G.M., Coyne, C.J., Hellens, R.P. 2011. Mendel, 150 years on. Trends in Plant Science. http://dx.doi.org/10.1016/j.tplants.2011.06.006.Mapping QTL for Fusarium wilt Race 2 partial resistance in pea (Pisum sativum L.)

- (Peer Reviewed Journal)Mcphee, K., Inglis, D., Gundersen, B., Coyne, C.J. 2012. Mapping QTL for Fusarium wilt Race 2 partial resistance in pea (Pisum sativum L.). Plant Breeding. pgs 1-7. doi:10.1111/j.1439-0523.2011.01938.x.Nitrogen fixation potential in global chickpea mini-core collection

- (Peer Reviewed Journal)Biabani, A., Carpenter-Boggs, L., Coyne, C.J., Taylor, L.D., Smith, J.L., Higgins, S. 2011. Nitrogen fixation potential in global chickpea mini-core collection. Biology and Fertility of Soils. 47:679–685.Nitrogen fixation potential in global chickpea mini-core collection

- (Peer Reviewed Journal)Biabani, A., Carpenter-Boggs, L., Coyne, C.J., Taylor, L.D., Smith, J.L., Higgins, S. 2011. Nitrogen fixation potential in global chickpea mini-core collection. Biology and Fertility of Soils. 47:679-685.Chapter 8. Genetic Adjustment to Changing Climates: Pea

- (Book / Chapter)Lentil germplasm, a basis for improvement

- (Peer Reviewed Journal)Synteny analysis of loci controlling partial resistance to Aphanomyces euteiches between Pisum sativum and Medicago truncatula

- (Abstract Only)New consistent QTL in pea associated with partial resistance to Aphanomyces euteiches in multiple field and controlled environments from France and the United States

- (Peer Reviewed Journal)Hamon, C., Baranger, A., Coyne, C.J., Mcgee, R.J., Le Goff, I., L Anthoene, V., Esnault, R., Riviere, J., Klein, A., Mangin, P., Mcphee, K.E., Roux-Duparque, M., Porter, L., Miteul, H., Lesne, A., Morin, G., Onfroy, C., Moussart, A., Tivoli, B., Delourme, R., Pilet Nayel, M. 2011. New consistent QTL in pea associated with partial resistance to Aphanomyces euteiches in multiple field and controlled environments from France and the United States. Theoretical and Applied Genetics. 123:261-281.Cicer

- (Book / Chapter)Mallikarjuna, N., Coyne, C.J., Cho, S., Rynearson, S., Rajesh, P., Jadhav, D.R., Muehlbauer, F. 2011. Cicer. Wild Crop Relatives: Genomic and Breeding Resources. Legume Crops and Forages. Springer, New York, N.Y. pp. 63-82.Phylogeny, phylogeography and genetic diversity of Pisum genus

- (Peer Reviewed Journal)Smykal, P., Kenicer, G., Flavell, A.J., Kosterin, O., Redden, R.J., Ford, R., Coyne, C.J., Maxted, N., Ambrose, M.J., Ellis, T.N. 2010. Phylogeny, phylogeography and genetic diversity of Pisum genus. Plant Genetic Resources. 1-15 doi:10.1017/S147926211000033X.Identification of Mendel's white flower character

- (Peer Reviewed Journal)Hellens, R.P., Moreau, C., Wang, K., Schwinn, K., Thomson, S., Fiers, M., Frew, T.J., Murray, S.R., Hofer, J., Jacobs, J., Davies, K.M., Allan, A.C., Bendahmane, A., Coyne, C.J., Timmerman, G.M., Ellis, N.T. 2010. Identification of Mendel's white flower character. PLoS One. 5 (10).Genetic diversity and relationship among faba bean (Vicia faba L.) germplasm entries as revealed by TRAP markers

- (Peer Reviewed Journal)Kwon, S.J., Hu, J., Coyne, C.J. 2010. Genetic diversity and relationship among faba bean (Vicia faba L.) germplasm entries as revealed by TRAP markers. Plant Genetic Resources: Characterization and Utilization. 8(3); 204-213.Lentils in Alaska: Potential and Prospects

- (Proceedings)Furman, B.J., Coyne, C.J. 2010. Lentils in Alaska: Potential and Prospects. Pisum Genetics. 41:61-62.A preliminary report on green peas in Alaska

- (Proceedings)Furman, B.J., Mcgee, R.J., Coyne, C.J. 2010. A preliminary report on green peas in Alaska. Pisum Genetics. 41:61-62Genetic Diversity within the USDA Pisum sativum Collection for Seed Sugar Composition and Concentration

- (Abstract Only)Mcgee, R.J., Coyne, C.J., Mattinson, S.D., Fuchs, S., Fellman, J. 2010. Genetic Diversity within the USDA Pisum sativum Collection for Seed Sugar Composition and Concentration. Food Legume Research International Conference Proceedings. abstract.Preliminary assessment of the genetic diversity of Pisum sativum USDA core seed collection for seed sugar composition and concentration

- (Abstract Only)Coyne, C.J., Mcgee, R.J., Mattinson, D.S., Fuch, S., Fellman, J.K. 2010. Preliminary assessment of the genetic diversity of Pisum sativum USDA core seed collection for seed sugar composition and concentration. Pisum Genetics 41:49-50.First-year results of evaluating winter-hardiness of 55 faba bean (Vicia faba L.) accessions from the NPGS collection

- (Peer Reviewed Journal)Hu, J., Mwengi, J.E., Coyne, C.J., Pan, W.L. 2009. First-year results of evaluating winter-hardiness of 55 faba bean (Vicia faba L.) accessions from the NPGS collection. Pisum Genetics. 41:57-58.Variation for seed minerals and protein concentrations in diverse germplasm of lentil

- (Abstract Only)Grusak, M.A., Coyne, C.J. 2009. Variation for seed minerals and protein concentrations in diverse germplasm of lentil [abstract]. North America Pulse Improvement Association Biennial Meeting. p. 11.Association mapping of yield candidate gene homologs in a diverse collection of pea (Pisum sativum L.) lines

- (Abstract Only)Murray, S., Falloon, L., Frew, T., Coyne, C.J., Butler, R., Timmerma-Vaughn, G. 2009. Association mapping of yield candidate gene homologs in a diverse collection of pea (Pisum sativum L.) lines. Meeting Proceedings. 19th Annual queenstown Molecular Biology Meetings 30 Aug-1st Sept., 2009.Analysis of the accumulation of Pea enation mosaic virus genomes in seed tissues and lack of evidence for seed transmission in pea (Pisum sativum L.)

- (Peer Reviewed Journal)Timmerman-Vaughn, G., Larsen, R.C., Murray, S., Coyne, C.J. 2009. Analysis of the accumulation of Pea enation mosaic virus genomes in seed tissues and lack of evidence for seed transmission in pea (Pisum sativum L.). Phytopathology 99:1281-1288.Development of genetic resources for association mapping in pea

- (Abstract Only)Coyne, C.J., Diesso, D., Vandemark, G.J., Timmerman-Vaughan, G., Brown, A.F. 2009. Development of genetic resources for association mapping in pea. Meeting Proceedings. Model Legume Congress, Asilomar Conference Grounds, July 12-16, 2009.Allelic diversity of USDA chickpea core collection of quantitative trait loci for resistance to ascochyta blight.

- (Abstract Only)Coyne, C.J., Taylor, L.D., Varshney, R.K. 2009. Allelic diversity of USDA chickpea core collection of quantitative trait loci for resistance to ascochyta blight. Second International Ascochyta Workshop, June 29-July 2, 2009.Formal collaboration between John Innes Pisum collection and USDA-ARS collection over Pisum genetic stocks.

- (Other)Ambrose, M.J., Coyne, C.J. 2009. Formal collaboration between John Innes Pisum collection and USDA-ARS collection over Pisum genetic stocks. Pisum Genetics 40:27.EFFORT TOWARDS A WORLD PEA (Pisum sativum L.) GERMPLASM CORE COLLECTION: The case for common markers and data compatibility

- (Peer Reviewed Journal)Smykal, P., Coyne, C.J., Ford, R., Redden, R., Hybl, M., Flavell, A.J., Warkentin, T., Burstin, J., Duc, G., Ambrose, M., Ellis, T., 2009. EFFORT TOWARDS A WORLD PEA (Pisum sativum L.) GERMPLASM CORE COLLECTION: The case for common markers and data compatibility. Pisum Genetics 40:11-14.Evaluation of USDA Lupinus sp. collection for seed-borne potyviruses

- (Peer Reviewed Journal)Robertson, N.L., Coyne, C.J. 2009. Evaluation of USDA Lupinus sp. collection for seed-borne potyviruses. Plant Genetic Resources. Published online 07 May 2009. doi:10.1017/S1479262109257923First Report of Bean Yellow Mosaic Virus from Diseased Lupinus luteus L. in Eastern Washington

- (Peer Reviewed Journal)Robertson, N.L., Coyne, C.J. 2009. First Report of Bean Yellow Mosaic Virus from Diseased Lupinus luteus L. in Eastern Washington. Plant Disease. 93(3):319.TaqMan assays exploring allelic diversity in USDA pea core collection.

- (Abstract Only)Coyne, C.J., Brown, A.F., Timmerman-Vaughn, G. 2009. TaqMan assays exploring allelic diversity in USDA pea core collection. Plant and Animal Genome XVII Conference Abstract p. 150.Chapter 6. Genetic Resources: Collection, Characterization, Conservation and Documentation

- (Book / Chapter)Furman, B.J., Coyne, C.J., Redden, B., Sharma, S.K., Vishnyakova, M. 2009. Chapter 6. Genetic Resources: Collection, Characterization, Conservation and Documentation. pages 64-75. In: The Lentil: Botany, Production and Uses, Erskine, W., Muehlbauer, F.J., Sarker, A. and Sharma, B. (eds.). CAB International, Oxfordshire, United Kingdom. Book Chapter.Genetic diversity analysis of 122 Lupin PI lines using AFLP markers.

- (Abstract Only)Iqbal, M., Coyne, C.J., Bhardwaj, H., Ahsan, R. 2008. Genetic diversity analysis of 122 Lupin PI lines using AFLP markers. Agronomy Abstracts. Annual Meeting ASA-CSSA-SSSA October 4-9, Houston, TX. p 658-9.Yield component analysis of the USDA chickpea core

- (Abstract Only)Coyne, C.J. 2008. Yield component analysis of the USDA chickpea core. Agronomy Abstracts. American Society of Agronomy, Madison, WI., p 658-2.Registration of W6 26740, W6 26743 and W6 26745 green pea germplasm resistant to Fusarium root rot.

- (Peer Reviewed Journal)Coyne, C.J., Porter, L., Inglis, D.A., Grunwald, N.J., Mcphee, K.E., Muehlbauer, F.J. 2008. Registration of W6 26740, W6 26743 and W6 26745 Green Pea Germplasm Resistant to Fusarium Root Rot. Journal of Plant Registrations (2008) Vol 2, No. 2, 137-139.Molecular identification of genetically distinct accessions in the USDA chickpea core collection.

- (Peer Reviewed Journal)Varshney, R.K., Coyne, C.J., Swamy, P., Hoisington, D. 2007. Molecular identification of genetically distinct accessions in the USDA chickpea core collection. Pisum Genetics 39: 32-33.Evaluation of genetic diversity, population structure and identification of a Medicago truncatula core collection using SSR markers

- (Abstract Only)Han, Y., Zhang, G., Sledge, M.K., Greene, S.L., Coyne, C.J., Monteros, M. 2007. Evaluation of genetic diversity, population structure and identification of a Medicago truncatula core collection using SSR markers. Abstract 278-3. Agronomy Abstracts. American Society of Agronomy, Madison, WI.Construction and characterization of two bacterial artificial chromosome libraries of pea (Pisum sativum L.) for the isolation of economically important genes

- (Peer Reviewed Journal)Coyne, C.J., Mcclendon, M.T., Walling, J.G., Timmerman-Vaughn, G.M., Murray, S., Meksem, K., Lightfoot, D.A., Shultz, J.L., Keller, K.E., Martin, R.R., Inglis, D.A., Rajesh, P.N., Mcphee, K.E., Weeden, N.F., Grusak, M.A., Storlie, E.W. 2007. Construction and characterization of two bacterial artificial chromosome libraries of pea (Pisum sativum L.) for the isolation of economically important genes. Genome 50:871-875.Pollen as a means of international transfer of germplasm

- (Peer Reviewed Journal)Mallikarjuna, N., Mcgrew, S.L., Rynearson, S., Rajest, P.N., Coyne, C.J., Muehlbauer, F.J. 2007. Pollen as a means of international transfer of germplasm. Journal of Semi-Arid Tropical Agricultural Research (eJournal of J.SAT Agric. Res. 3(1):www.icrisat.org/Journal/chickpea_pigeonpea3.htm.Lens Biodiversity

- (Book / Chapter)Redden, B., Maxted, N., Furman, B., Coyne, C.J. 2007. Lens Biodiversity, p. 11-22.in: SS Yadav, D. McNeil, P.C. Stevenson (eds). Lentil: An Ancient Crop for Modern Times.Candidate genes associated with QTL controlling resistance to fusarium root rot in pea

- (Abstract Only)Coyne, C.J., Pilet-Nayel, M.-L 2008. Candidate genes associated with QTL controlling resistance to fusarium root rot in pea. Plant and Animal Genome VX Conference Abstracts. January 12-16, San Diego, CA.Biodiversity Management

- (Book / Chapter)Redden, B., Furman, B., Upadhyaya, H.D., Pundir, R.S., Gowda, C.L., Coyne, C.J., Enneking, D. 2007. Biodiversity Management. In: Yadav S.S., R.J. Redden, W. Chen, B. Sharma, editors. Chickpea Breeding and Management. p. 355-368.Yield Component Study of the USDA Pea Core Collection

- (Abstract Only)Coyne, C.J., Brown, A., Watt, C., Butler, R., Timmerman-Vaughan, G. 2006. Yield Component Study of the USDA Pea Core Collection [abstract]. ASA-CSSA-SSSA Annual Meeting Abstract. p. 273-12.APPLICATION OF BIOTECHNOLOGY IN BREEDING LENTIL FOR RESISTANCE TO BIOTIC AND ABIOTIC STRESS.

- (Peer Reviewed Journal)Muehlbauer, F.J., Cho, S., Sarker, A., Mcphee, K.E., Coyne, C.J., Rajesh, P., Ford, R. 2006. Application of biotechnology in breeding lentil for resistance to biotic and abiotic stress. Euphytica 147: 149-165.SCREENING TECHNIQUES AND SOURCES OF RESISTANCE TO ROOT DISEASES IN COOL SEASON FOOD LEGUMES

- (Peer Reviewed Journal)Infantino, A., Kharrat, M., Riccioni, L., Coyne, C.J., Mcphee, K.E., Grunwald, N.J. 2006. Screening techniques and sources of resistance to root diseases in cool season food legumes. Euphytica 147:201-221.SSR diversity of vegetable soybean [Glycine max (L.) Merr.]

- (Peer Reviewed Journal)Mimura, M., Coyne, C.J., Bambuck, M.W., Lumpkin, T.A. 2006. Ssr diversity of vegetable soybean [glycine max (l.) merr.]. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-006-0006-4.Identification of Large-Seeded High Yielding Diverse Kabuli Accessions in Newly Assembled Chickpea Germplasm.

- (Peer Reviewed Journal)Upadhyaya, H.D., Coyne, C.J., Singh, S., Gowda, C., Lalitha, N., Muehlbauer, F.J. 2006. Identification of Large-Seeded High Yielding Diverse Kabuli Accessions in Newly Assembled Chickpea Germplasm. International Chickpea and Pigeonpea Newsletter.13:2-5REFINED USDA-ARS PEA CORE COLLECTION BASED ON 26 QUANTITATIVE TRAITS

- (Peer Reviewed Journal)Coyne, C.J., Brown, A., Timmerman-Vaughan, G.M., Mcphee, K.E., Grusak, M.A. 2005. Refined usda-ars pea core collection based on 26 quantitative traits. Pisum Genetics. 37:3-6.APPLICATION OF MOLECULAR MARKERS IN COOL SEASON FOOD LEGUME BREEDING

- (Proceedings)Coyne, C.J., Baum, M., Sharma, P.C., Gaur, P.M., Muehlbauer, F.J., Mcphee, K.E., Chen, W., Timmerman-Vaughan, G.M., Pilet-Nayel, M., Brown, A., Mcgee, R.J., Udupa, S.M., Hamwieh, A., Choumane, W. 2005. Application of molecular markers in cool season food legume breeding. Proceedings of the International Food Legume Research Conference IV, October 18-22, 2005, New Delhi, India. p. 1-29.Y15_999FW, A DOMINANT SCAR MARKER LINKED TO THE FUSARIUM WILT RACE 1 (FW) RESISTANCE GENE IN PEA

- (Peer Reviewed Journal)Okubara, P.A., Keller, K.E., Mcclendon, M.T., Inglis, D.A., Mcphee, K.E., Coyne, C.J. 2005.  Y15_999fw, a dominant scar marker linked to the fusarium wilt race 1 (fw) resistance gene in pea. Pisum Genetics.  Vol.37, pp32-35.VARIATION FOR PEA SEED PROTEIN CONCENTRATION IN THE USDA PISUM CORE COLLECTION

- (Peer Reviewed Journal)Coyne, C.J., Grusak, M.A., Razai, L. 2005. Variation for pea seed protein concentration in the usda pisum core collection. Pisum Genetics. 37:7-11.MICROSATELLITE MARKER POLYMORPHISM AND MAPPING IN PEA (PISUM SATIVUM L.)

- (Peer Reviewed Journal)Loridon, K., Mcphee, K.E., Morin, J., Dubreuil, P., Pilet-Nayel, M.L., Aubert, G., Rameau, C., Baranger, A., Coyne, C.J., Lejeune-Henault, I., Burstin, J. 2005. Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.). Journal of Theoretical and Applied Genetics 111:1022-1031.SIMPLIFIED GERMINATION OF PERENNIAL CICER

- (Peer Reviewed Journal)Coyne, C.J., Sharp-Vincent, T., Cashman, M.J., Watt, C., Chen, W., Muehlbauer, F.J., Mallikarjuna, N. 2005. Simplified germination of perennial cicer. International Chickpea NDA Pigeonpea Newsletter, V. 12, P. 16.CONSISTENT QTLS IN PEA FOR PARTIAL RESISTANCE TO APHANOMYCES EUTEICHES ISOLATES FROM THE U.S. AND FRANCE.

- (Peer Reviewed Journal)Pilet-Nayel, M.L., Muehlbauer, F.J., Mcgee, R.J., Kraft, J.M., Baranger, A., Coyne, C.J. 2005. Consistent qtls in pea for partial resistance to aphanomyces euteiches isolates from the u.s. and france.. Phytopathology. 95:1287-1293.CHARACTERIZATION OF CHICKPEA DIFFERENTIALS FOR VIRULENCE ASSAY OF ASCOCHYTA BLIGHT AND IDENTIFICATION OF CHICKPEA ACCESSIONS RESISTANT TO ASCOCHYTA RABIEI

- (Peer Reviewed Journal)Chen, W., Coyne, C.J., Peever, T., Muehlbauer, F.J. 2004. Characterization of chickpea differentials for virulence assay of ascochyta blight and identification of chickpea accessions resistant to ascochyta rabiei. Plant Pathology. 53:759-769.PROCEEDINGS OF THE SECOND INTERNATIONAL APHANOMYCES WORKSHOP

- (Proceedings)GRUNWALD, N.J., COYNE, C.J. (Eds.)  2003. PROCEEDINGS OF THE SECOND INTERNATIONAL APHANOMYCES WORKSHOP. UNITED STATE DEPARTMENT OF AGRICULTURE-AGRICULTURAL RESEARCH SERVICE, PROSSER, WA.  112 pp.CONSTRUCTION OF FIRST HINDIII BACTERIAL ARTIFICIAL CHROMOSOME LIBRARY AND ITS USE IN IDENTIFICATION OF CLONES ASSOCIATED WITH DISEASE RESISTANCE IN CHICKPEA

- (Peer Reviewed Journal)RAJESH, P.N., COYNE, C.J., MEKSEM, K., DEV, K.D., GUPTA, V., MUEHLBAUER, F.J. CONSTRUCTION OF FIRST HINDIII BACTERIAL ARTIFICIAL CHROMOSOME LIBRARY AND ITS USE IN IDENTIFICATION OF CLONES ASSOCIATED WITH DISEASE RESISTANCE IN CHICKPEA. JOURNAL OF THEORETICAL AND APPLIED GENETICS. 2004. v. 108. p. 663-669.RESISTANCE TO FUSARIUM ROOT ROT IN THE PISUM CORE COLLECTION

- (Abstract Only)GRUNWALD, N.J., COFFMAN, V.A., KRAFT, J., COYNE, C.J. RESISTANCE TO FUSARIUM ROOT ROT IN THE PISUM CORE COLLECTION. NORTH AMERICAN PULSE IMPROVEMENT ASSOCIATION. p. 14. 2003.GENETICS OF PARTIAL RESISTANCE TO APHANOMYCES ROOT ROT IN PEA

- (Proceedings)PILET-NAYEL, M.L., DORMEGNIES, T., MCGEE, R.J., ESNAULT, R., MANGIN, P., ROUX-DUPARQUE, M., GRUNWALD, N.J., BARANGER, A., COYNE, C.J. GENETICS OF PARTIAL RESISTANCE TO APHANOMYCES ROOT ROT IN PEA. International Aphanomyces Symposium. P 72-75. 2003.CHARACTERIZATION OF CHICKPEA DIFFERENTIALS FOR ASCOCHYTA RABIEI USING AN IMPROVED VIRULENCE ASSAY

- (Abstract Only)CHEN, W., COYNE, C.J., PEEVER, T., MUEHLBAUER, F.J. CHARACTERIZATION OF CHICKPEA DIFFERENTIALS FOR ASCOCHYTA RABIEI USING AN IMPROVED VIRULENCE ASSAY. PHYTOPATHOLOGY 93(Supplement):S16A NOVEL RAPD MARKER LINKED TO THE FUSARIUM WILT RACE 5 RESISTANCE GENE (FWF) IN PISUM SATIVUM

- (Peer Reviewed Journal)Okubara, P.A., Inglis, D.A., Muehlbauer, F.J., Coyne, C.J. A novel RAPD marker linked to the Fusarium wilt race 5 resistance gene (Fwf) in pisum sativum. Pisum Genetics 34:6-8.CONSTRUCTION OF THE FIRST BACTERIAL ARTIFICAL CHROMOSOME LIBRARY IN CHICKPEA

- (Peer Reviewed Journal)RAJESH, P.N., MEKSEM, K., COYNE, C.J., LIGHTFOOT, D.A., MUEHLBAUER, F.J. CONSTRUCTION OF THE FIRST BACTERIAL ARTIFICAL CHROMOSOME LIBRARY IN CHICKPEA. INTERNATIONAL CHICKPEA AND PIGEONPEA NEWSLETTER. 2002. v. 9. p. 29-30.QUANTITATIVE TRAIT LOCI MAPPING FOR APHANOMYCES ROOT ROT RESISTANCE IN PEA.

- (Proceedings)QUANTITATIVE TRAIT LOCI FOR FIELD PARTIAL RESISTANCE TO APHANOMYCES        ROOT ROT IN PEA

- (Peer Reviewed Journal)PILET-NAYEL, M., MUEHLBAUER, F.J., MCGEE, R., KRAFT, J., BARANGER, A., COYNE, C.J. QUANTITATIVE TRAIT LOCI FOR FIELD PARTIAL RESISTANCE TO APHANOMYCES        ROOT ROT IN PEA. JOURNAL OF THEORETICAL AND APPLIED GENETICS. 2002.POSITIONAL CLONING OF FUSARIUM WILT RESISTANCE GENES IN PEA.

- (Proceedings)DNA MARKERS FOR FUSARIUM HEAD BLIGHT RESISTANCE QTLS IN TWO WHEAT          POPULATIONS

- (Peer Reviewed Journal)DNA MARKERS FOR FUSARIUM HEAD BLIGHT RESISTANCE QTLS IN TWO WHEAT          POPULATIONS

- (Peer Reviewed Journal)CROP IMPROVEMENT AND THE ACCUMULATION AND PARTITIONING OF BIOMASS AND      NITROGEN IN LENTIL (LENS CULINARIS MEDIK.)

- (Peer Reviewed Journal)
                    ARS News Articles
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                                                Disease-resistant Peas Developed for Releaseitem
                                                New Peas Unfazed by Viral Bullyitem
                                                New Peas Resist Fungal Foe


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