# Patent

## Title
Heparosan-glucuronic acid-5-epimerase, and method for producing polysaccharide using same

## Abstract

To provide a polypeptide having heparosan-glucuronate 5-epimerase activity, whereby means for producing a polysaccharide in which hexuronic acid residues has been epimerized is provided. Through screening of Achatina fulica cDNA library, a DNA encoding a polypeptide of heparosan-glucuronate 5-epimerase is obtained. The epimerase acts on glucuronic acid residues of N-acetyl heparosan and/or iduronic acid residues of completely desulfated N-acetylated heparin. The polypeptide encoded by the DNA is expressed by insect cells, to thereby yield the polypeptide having heparosan-glucuronate 5-epimerase activity. By bringing the polypeptide into contact with N-acetyl heparosan or completely desulfated N-acetylated heparin, a polysaccharide in which hexuronic acid residues has been epimerized is yielded.

## Background
CROSS REFERENCE TO RELATED APPLICATIONS
This application is a National Stage of International Application No. PCT/JP2014/065533 filed Jun. 12, 2014, claiming priority based on Japanese Patent Application No. 2013-123435 filed Jun. 12, 2013, the contents of all of which are incorporated herein by reference in their entirety.
TECHNICAL FIELD
The present invention relates to a heparosan-glucuronate 5-epimerase (heparosan-glucuronic acid-5-epimerase). More specifically, the present invention relates to an enzyme derived from Achatina fulica, the enzyme having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues, and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues; to a polypeptide having such activity; to a nucleic acid encoding the polypeptide; to a vector including the nucleic acid; to a host cell harboring the nucleic acid and/or the vector; to a method for producing the polypeptide; to a method for producing a polysaccharide in which hexuronic acid residues has been epimerized, the method employing the enzyme and/or the polypeptide; and to others.
BACKGROUND ART
The present specification may employ the following abbreviations.
GAG: glycosaminoglycan
PG: proteoglycan
GlcNAc: N-acetyl glucosamine
GlcNS: N-sulfated glucosamine
GlcN: glucosamine
GlcA: glucuronic acid
IdoA: iduronic acid
IdoA(2S): 2-O-sulfated iduronic acid
HexA: hexuronic acid
aMan: 2,5-anhydromannose
AS: acharan sulfate
ACH: acharan (2-O-desulfated AS)
NAH: N-acetyl heparosan
NSH: N-deacetylated N-sulfated heparosan
HEP: heparin
CDSNAc-HEP: completely desulfated N-acetylated heparin
CDSNS-HEP: completely desulfated N-resulfated heparin
HS: heparan sulfate
C5-epi: heparosan-N-sulfate-glucuronate 5-epimerase
HG-5epi: heparosan-glucuronate 5-epimerase
It is known that acharan sulfate (AS) is a type of glycosaminoglycan (GAG), which is isolated from Achatina fulica and is known to be a linear GAG having a structure in which disaccharides formed of GlcNAc and IdoA(2S) (-[4GlcNAcα1-4IdoA(2S)α1]-), represented by the following structural formula (1), are repeatedly polymerized (Non-Patent Documents 1 and 2). Also, AS is known to have physiological activities similar to those of heparin (HEP) and heparan sulfate (HS), which are GAG having the carbohydrate backbone common to AS. Specifically, such activities include angiogenic inhibitory activity (Non-Patent Document 3), immunostimulatory activity (Non-Patent Document 4), hypoglycemic activity (Non-Patent Document 4), anti-coagulation activity (Non-Patent Document 5), anti-tumor activity (Non-Patent Document 6), and adhesion inhibitory activity against Helicobacter pylori (Non-Patent Document 7).




Biosynthesis of HEP and HS has been elucidated through analyses of carbohydrate structures provided by knock-out mice or mutant cells, and experiments evaluating substrate specificity of enzymes. The elucidated mechanism of the biosynthesis includes synthesis of N-acetyl heparosan (NAH), which is a GAG having a structure in which disaccharide units being formed of GlcNAc and GlcA (-[4GlcNAcα1-4GlcAβ1]-) are repeatedly polymerized; N-deacetylation and N-sulfation; epimerization of GlcA residues to IdoA residues; and O-sulfation, in this order (Non-Patent Documents 8 and 9). Among these steps, epimerization of GlcA residues to IdoA residues is catalyzed by a heparosan-N-sulfate-glucuronate 5-epimerase (C5-epi, EC: 5.1.3.17). Thus, all the known members of C5-epi involved in biosynthesis of HEP and HS are known to act on, as a substrate, N-deacetylated N-sulfated heparosan (NSH), which is a GAG generated through N-deacetylation and N-sulfation of NAH, and to not act on NAH itself (Non-Patent Documents 10 to 14 and Patent Documents 1 and 2).
Regarding Achatina fulica, proteome analysis has been carried out to collectively identify a group of enzymes involved in biosynthesis of proteoglycan (PG). The analysis has revealed a variety of enzymes involved in biosynthesis of PG core protein or GAG, based on the homology to a known protein (Non-Patent Document 15). Regarding synthetic pathway of HEP and HS, proteins, which are thought to serve as NAH synthase, N-deacetylase/N-sulfotransferase, and O-sulfotransferase have been found. However, no protein having a homology to C5-epi, which is a known epimerase, has been identified. In addition, regarding Achatina fulica, the enzymatic cascade in biosynthesis of AS has not been elucidated. Thus, the substrate on which an IdoA synthase acts and the product obtainable by the synthase reaction have not been identified.
PRIOR ART DOCUMENTS
Patent Documents


    Patent Document 1: WO 1998/048006, pamphlet
    Patent Document 2: WO 2002/046379, pamphlet


Non-Patent Documents


    Non-Patent Document 1: Kim Y. S., Jo Y. Y., Chang I. M., Toida T, Park Y, Linhardt R. J., J. Biol. Chem., 1996 May 17; 271(20): 11750-5.
    Non-Patent Document 2: Kim Y. S., Ahn M. Y., Wu S. J., Kim D. H., Toida T, Teesch L. M, Park Y., Yu G., Lin J., Linhardt R. J., Glycobiology, 1998 September; 8(9): 869-77.
    Non-Patent Document 3: Ghosh A. K., Hirasawa N, Lee Y. S., Kim Y. S., Shin K. H., Ryu N., Ohuchi K., Br. J. Pharmacol., 2002 October; 137(4): 441-8.
    Non-Patent Document 4: Shim J. Y., Lee Y. S., Jung S. H., Choi H. S., Shin K. H., Kim Y. S., Arch. Pharm. Res., 2002 December; 25(6): 889-94.
    Non-Patent Document 5: Li D. W., Lee I. S., Sim J. S., Toida T, Linhardt R. J., Kim Y. S., Thromb Res., 2004; 113(1): 67-73.
    Non-Patent Document 6: Joo E. J., Yang H., Park Y., Park N. Y., Toida T., Linhardt R. J., Kim Y. S., J. Cell Biochem., 2010 Aug. 1; 110(5): 1272-8.
    Non-Patent Document 7: Sim J. S., Hahn B. S., Im A. R., Park Y., Shin J. E., Bae E. A., Kim D. H., Kim Y. S., Glycoconj. J., 2011 August; 28(6): 411-8.
    Non-Patent Document 8: Lindahl U., Kusche-Gullberg M, Kjellen L., J. Biol. Chem., 1998 Sep. 25; 273(39): 24979-82.
    Non-Patent Document 9: Esko J. D., Lindahl U., J. Clin. Invest., 2001 July; 108(2): 169-73.
    Non-Patent Document 10: Campbell P., Hannesson H. H., Sandback D., Roden L., Lindahl U., Li J. P., J. Biol. Chem., 1994 Oct. 28; 269(43): 26953-8.
    Non-Patent Document 11: Li J., Hagner-McWhirter A., Kjellen L., Palgi J., Jalkanen M., Lindahl U., J. Biol. Chem., 1997 Oct. 31; 272(44): 28158-63.
    Non-Patent Document 12: Hagner-Mcwhirter A., Lindahl U., Li J. P., Biochem. J., 2000 Apr. 1; 347 Pt 1: 69-75.
    Non-Patent Document 13: Li J. P., Gong F., El Darwish K., Jalkanen M., Lindahl U., J. Biol. Chem., 2001 Jun. 8; 276(23): 20069-77.
    Non-Patent Document 14: Crawford B. E., Olson S. K., Esko J. D., Pinhal M. A., J. Biol. Chem., 2001 Jun. 15; 276(24): 21538-43.
    Non-Patent Document 15: Gesteira T. F., Coulson-Thomas V. J., Ogata F. T., Farias E. H., Cavalheiro R. P., de Lima M. A., Cunha G. L, Nakayasu E. S., Almeida I. C., Toma L., Nader H. B., Biochim. Biophys. Acta., 2011 December; 1814(12): 1862-9.


SUMMARY OF THE INVENTION
Problems to be Solved by the Invention
An object of the present invention is to provide a heparosan-glucuronate 5-epimerase (HG-5epi). More specific objects of the present invention include to provide an enzyme derived from Achatina fulica, the enzyme having activity of epimerizing GlcA residues of NAH to IdoA residues, and/or activity of epimerizing IdoA residues of CDSNAc-HEP to GlcA residues (hereinafter such activities are collectively referred to as “HG-5epi activity”); a polypeptide having such activities; a nucleic acid encoding the polypeptide; a vector including the nucleic acid; a host cell harboring the nucleic acid and/or the vector; a method for producing the polypeptide; a method for producing a polysaccharide in which HexA has been epimerized, the method employing the enzyme and/or the polypeptide; and others.
Means for Solving the Problems
The present inventors have focused on AS being a GAG which includes GlcNAc and IdoA(2S) as structural components and which includes no GlcNS in the backbone thereof, and have thought that Achatina fulica contains a novel epimerase having substrate specificity completely different from that of a known C5-epi involved in biosynthesis of HEP and HS. In other words, the present inventors have conceived that an epimerase acting on NAH as a substrate—HG-5epi—is present in Achatina fulica, and the epimerase is involved in biosynthesis of AS.
The present inventors have conducted extensive studies to attain the aforementioned objects, and have found that a novel epimerase—HG-5epi—is present in Achatina fulica. The inventors have successfully isolated a DNA encoding HG-5epi from Achatina fulica. The present invention has been accomplished on the basis of the above.
Accordingly, the present invention can be exemplified as follows.
[1]
An enzyme derived from Achatina fulica, the enzyme having the following characteristics (A) and (B):
(A) the enzyme having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues; and
(B) the enzyme having substantially no activity of epimerizing glucuronic acid residues of N-sulfated heparosan to iduronic acid residues and/or substantially no activity of epimerizing iduronic acid residues of completely desulfated N-resulfated heparin to glucuronic acid residues.
[2]
A polypeptide selected from the group consisting of the following (A) to (C):
(A) a polypeptide comprising the amino acid sequence (a1) or (a2):

    
    
        (a1) the amino acid sequence defined by amino acid NOs: 1 to 601 in SEQ ID NO: 2, and
        (a2) the amino acid sequence defined by amino acid NOs: 34 to 601 in SEQ ID NO: 2;
    
    


(B) a polypeptide comprising the amino acid sequence equivalent to that of the polypeptide (A), except that one or a small number of amino acid residues are substituted, deleted, inserted, and/or added, and having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues; and
(C) a polypeptide comprising the amino acid sequence of a fusion polypeptide formed by adding a peptide tag to the polypeptide (A) or (B), and having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues.
[3]
A polypeptide having the following characteristics (A) to (C):
(A) the polypeptide having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues;
(B) the polypeptide having an optimum pH of 5.5 to 6.0; and
(C) the polypeptide substantially losing the activity in the presence of 0.1% (w/v) or more of sodium deoxycholate.
[4]
A nucleic acid encoding the aforementioned enzyme or any of the aforementioned polypeptides.
[5]
A DNA selected from the group consisting of the following (A) to (C):
(A) a DNA comprising the nucleotide sequence (a1) or (a2):

    
    
        (a1) the nucleotide sequence defined by base NOs: 1 to 1,806 in SEQ ID NO: 1, and
        (a2) the nucleotide sequence defined by base NOs: 100 to 1,806 in SEQ ID NO: 1;
    
    


(B) a DNA hybridizing with the DNA consisting of the nucleotide sequence complementary to that of the DNA (A) under a stringent condition, and encoding a polypeptide having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues; and
(C) a DNA comprising the nucleotide sequence of a fusion DNA formed by adding the DNA encoding a peptide tag to the DNA (A) or (B), and encoding a polypeptide having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues.
[6]
A vector including the aforementioned nucleic acid and/or the aforementioned DNA.
[7]
A host cell harboring the aforementioned nucleic acid, the aforementioned DNA, and/or the aforementioned vector.
[8]
A method for producing a polypeptide, the method comprising the following (A) and (B):
(A) a step of expressing a polypeptide having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues, and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues, by using the host cell; and
(B) a step of recovering the polypeptide expressed in the step (A).
[9]
A polypeptide produced through the aforementioned method.
[10]
A method for producing a polysaccharide in which hexuronic acid residues has been epimerized, the method comprising a step of bringing an enzyme and/or a polypeptide having activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues and/or activity of epimerizing iduronic acid residues of completely desulfated N-acetylated heparin to glucuronic acid residues, into contact with a polysaccharide including a disaccharide formed of an N-acetyl glucosamine residue and a hexuronic acid residue.
[11]
A method for producing a polysaccharide in which hexuronic acid residues has been epimerized, the method comprising a step of bringing the aforementioned enzyme and/or the aforementioned polypeptide into contact with a polysaccharide including a disaccharide formed of an N-acetyl glucosamine residue and a hexuronic acid residue.
[12]
A polysaccharide produced through any of the aforementioned methods.
[13]
A polysaccharide having a structure in which glucuronic acid residues of N-acetyl heparosan has been epimerized to iduronic acid residues.
[14]
Any of the aforementioned polysaccharides, wherein the ratio of the amount of the iduronic acid residues to that of the hexuronic acid residues present in the polysaccharide backbone thereof is 20% to 75%.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 A photoimage of a CBB-stained gel of a column-purified HG-5epi eluted fraction obtained by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions.
FIG. 2 A flow diagram showing an HPLC post column labeling method.
FIG. 3 A chromatogram of NAH or CDSNAc-HEP subjected to N-deacetylation and nitrous acid degradation, followed by the HPLC post column labeling method.
FIG. 4 A chromatogram of NAH subjected to contact with roughly purified HG-5epi and then N-deacetylation and nitrous acid degradation, followed by the HPLC post column labeling method.
FIG. 5 A chromatogram of NSH subjected to contact with roughly purified HG-5epi and then nitrous acid degradation, followed by the HPLC post column labeling method.
FIG. 6 A chromatogram of NAH subjected to contact with HG-5epi and then N-deacetylation and nitrous acid degradation, followed by the HPLC post column labeling method.



MODES FOR CARRYING OUT THE INVENTION
(1) Enzyme of the Present Invention
The enzyme of the present invention is an enzyme derived from Achatina fulica, the enzyme having the following characteristics (A) and (B).
(A) the enzyme having activity of epimerizing GlcA residues of NAH to IdoA residues and/or activity of epimerizing IdoA residues of CDSNAc-HEP to GlcA residues; and
(B) the enzyme having substantially no activity of epimerizing GlcA residues of NSH to IdoA residues and/or substantially no activity of epimerizing IdoA residues of CDSNS-HEP to GlcA residues.
As used herein, the expression “derived from Achatina fulica” refers to a state that a target is able to be recovered from Achatina fulica. 
The enzyme of the present invention has HG-5epi activity. As mentioned above, the term “HG-5epi activity” refers to activity of epimerizing GlcA residues of NAH to IdoA residues, and/or activity of epimerizing IdoA residues of completely desulfated N-acetylated heparin (CDSNAc-HEP) to GlcA residues. HG-5epi activity can be determined through, for example, an HPLC post column labeling method as described in the below-mentioned <Example 14>, <Example 16>, or <Example 17>. Alternatively, HG-5epi activity may be determined through a method employing a radioisotope as described in, for example, the below-mentioned <Example 20> or <Example 21>. More specifically, the activity of epimerizing GlcA residues of NAH to IdoA residues may be determined through a method described in the below-mentioned <Example 14>, <Example 16>, <Example 20>, or <Example 21>. Also, specifically, the activity of epimerizing IdoA residues of CDSNAc-HEP to GlcA residues may be determined through a method described in the below-mentioned <Example 17>.
The enzyme of the present invention may have both of, or either one of activity of epimerizing GlcA residues of NAH to IdoA residues and activity of epimerizing IdoA residues of CDSNAc-HEP to GlcA residues. For example, the enzyme of the present invention may have activity of epimerizing GlcA residues of NAH to IdoA residues and substantially no activity of epimerizing IdoA residues of CDSNAc-HEP to GlcA residues.
NAH is a polysaccharide including disaccharides formed of a GlcNAc residue and a GlcA residue. CDSNAc-HEP is a polysaccharide including disaccharides formed of a GlcNAc residue and a GlcA residue, and disaccharides formed of a GlcNAc residue and an IdoA residue. Hereinafter, GlcA and IdoA will be collectively referred to as “HexA.” That is, each of NAH and CDSNAc-HEP is a polysaccharide including disaccharides formed of a GlcNAc residue and a HexA residue.
NAH and CDSNAc-HEP are examples of the substrate on which the enzyme of the present invention acts, and no particular limitation is imposed on the substrate on which the enzyme of the present invention acts. That is, so long as the enzyme of the present invention has HG-5epi activity, the enzyme may have activity of epimerizing a HexA residue adjacent to a GlcNAc residue of another polysaccharide including a disaccharide formed of a GlcNAc residue and a HexA residue (i.e., a polysaccharide other than NAH and CDSNAc-HEP). No particular limitation is imposed on the term “another polysaccharide” as used herein, so long as the polysaccharide includes a disaccharide formed of a GlcNAc residue and a HexA residue. The concept “another polysaccharide” more specifically refers to a polysaccharide including a disaccharide formed of a GlcNAc residue and a GlcA residue, and/or a disaccharide formed of a GlcNAc residue and an IdoA residue. The “epimerization of HexA residues” refers to epimerization of GlcA residues to IdoA residues and/or epimerization of IdoA residues to GlcA residues.
As used herein, the “disaccharide formed of a GlcNAc residue and a HexA residue” refers to a disaccharide in which a GlcNAc residue is bonded to a HexA residue. No particular limitation is imposed on the sequential order of the GlcNAc residue and the HexA residue in the “disaccharide formed of a GlcNAc residue and a HexA residue.” Specific examples of the “disaccharide formed of a GlcNAc residue and a HexA residue” include disaccharides represented by the structural formulas (2) to (5) given hereinbelow.
In other words, more specifically, the enzyme of the present invention may be, for example, an enzyme having activity of epimerizing a disaccharide (GlcNAcα1-4GlcA) represented by the following structural formula (2) which is formed of a GlcNAc residue and a GlcA residue and which is present in a polysaccharide backbone, to a disaccharide (GlcNAcα1-4IdoA) represented by the following structural formula (3) which is formed of a GlcNAc residue and an IdoA residue, and/or activity of epimerizing the disaccharide represented by the following structural formula (3) which is present in a polysaccharide backbone, to the disaccharide represented by the following structural formula (2).




Also, more specifically, the enzyme of the present invention may be, for example, an enzyme having activity of epimerizing a disaccharide (GlcAβ1-4GlcNAc) represented by the following structural formula (4) which is formed of a GlcA residue and a GlcNAc residue and which is present in a polysaccharide backbone, to a disaccharide (IdoAα1-4GlcNAc) represented by the following structural formula (5) which is formed of an IdoA residue and a GlcNAc residue, and/or activity of epimerizing the disaccharide represented by the following structural formula (5) which is present in a polysaccharide backbone, to the disaccharide represented by the following structural formula (4).




No particular limitation is imposed on the position of the GlcA residue in the polysaccharide (e.g., NAH) epimerized to the IdoA residue by the enzyme of the present invention. In the polysaccharide (e.g., NAH) backbone, such a GlcA residue is present at a reducing end, at a non-reducing end, or at a middle portion of the polysaccharide backbone. In the present invention, the position may be any of the three cases.
No particular limitation is imposed on the position of the IdoA residue in the polysaccharide (e.g., CDSNAc-HEP) epimerized to the GlcA residue by the enzyme of the present invention. In the polysaccharide (e.g., CDSNAc-HEP) backbone, such an IdoA residue is present at a reducing end, at a non-reducing end, or at a middle portion of the polysaccharide backbone. In the present invention, the position may be any of the three cases.
The enzyme of the present invention is an enzyme having substantially no C5-epi activity. As used herein, the term “C5-epi activity” refers to activity of epimerizing GlcA residues of NSH to IdoA residues, and/or activity of epimerizing IdoA residues of completely desulfated N-resulfated heparin (CDSNS-HEP) to GlcA residues. The C5-epi activity may be determined through an HPLC post column labeling method as described in, for example, the below-mentioned <Example 15> or <Example 18>. Specifically, the activity of epimerizing GlcA residues of NSH to IdoA residues may be determined through a method described in the below-mentioned <Example 15>. Also, specifically, the activity of epimerizing IdoA residues of CDSNS-HEP to GlcA residues may be determined through a method described in the below-mentioned <Example 18>.
The expression “having substantially no activity” means that no change (increase or decrease) in IdoA content or substantially no change (increase or decrease) in IdoA content is observed before and after bringing a polysaccharide corresponding to the activity into contact with an enzyme. Specifically, for example, the expression “having substantially no C5-epi activity” means that no change (increase or decrease) in IdoA content or substantially no change (increase or decrease) in IdoA content is observed before and after bringing NSH into contact with an enzyme, and/or that no change (increase or decrease) in IdoA content or substantially no change (increase or decrease) in IdoA content is observed before and after bringing CDSNS-HEP into contact with an enzyme.
As used herein, the “IdoA content” refers to a ratio of the amount of IdoA residues to that of HexA residues present in a polysaccharide backbone; i.e., the percentage equivalent derived by dividing the total number of IdoA residues by that of HexA residues (the sum of the total number of GlcA residues and that of IdoA residues). The IdoA content may be determined through a method as described in, for example, the below-mentioned <Example 14>, <Example 15>, <Example 16>, <Example 17>, or <Example 18>. Thus, the state that “substantially no change in IdoA content is observed” may refer to the case where upon determining and comparing IdoA contents through an HPLC post column labeling method before and after bringing a polysaccharide into contact with the enzyme of the present invention, a change only within an error range is observed in IdoA content. Specifically, the state that “substantially no change in IdoA content is observed” may refer to the case where the amount of the change is 5% or less, 2% or less, 1% or less, or 0.5% or less, i.e., when the IdoA content before enzymatic reaction is n (%), the IdoA content after the enzymatic reaction is n−5(%) to n+5(%), n−2(%) to n+2(%), n−1(%) to n+1(%), or n−0.5(%) to n+0.5(%).
Whether or not a protein has HG-5epi activity can be determined through a method as described in the below-mentioned <Example 14>, <Example 16>, <Example 17>, <Example 20>, or <Example 21>. Also, whether or not a protein has substantially no C5-epi activity can be determined through a method as described in the below-mentioned <Example 15> or <Example 18>. Thus, these methods may determine whether or not any protein derived from Achatina fulica is the enzyme of the present invention.
The enzyme of the present invention may be recovered from Achatina fulica. In one specific procedure, for example, the enzyme of the present invention is recovered from a cell disrupted product obtained by crushing Achatina fulica cells or a cell extract obtained from Achatina fulica cells. The “crushing (disruption or disintegration)” may be carried out through a technique appropriately selected in accordance with the cell species. Examples of the crushing technique include homogenizing, ultrasonication, freezing and thawing, and addition of a surfactant. These techniques may be appropriately employed in combination. No particular limitation is imposed on the cells from which the enzyme of the present invention is to be recovered, so long as the enzyme of the present invention is expressed in the cells. Examples of such cells include mucous gland cells.
The enzyme of the present invention may be recovered through a known technique as employed in isolation and purification of protein. Examples of such techniques include precipitation with ammonium sulfate, gel filtration chromatography, ion exchange chromatography, hydrophobic interaction chromatography, hydroxyapatite chromatography, and affinity chromatography. These techniques may be appropriately employed in combination.
The enzyme of the present invention may consist of the enzyme of the present invention as a single component or may contain an additional component other than the enzyme of the present invention. Examples of the “additional component other than the enzyme of the present invention” include alkali metal salts, surfactants, buffers, and components derived from Achatina fulica. No particular limitation is imposed on the form of the enzyme of the present invention, and it may be liquid or solid. In the case where the enzyme of the present invention is provided as a liquid, the liquid may be in the frozen state or the liquid state (thawed state). When the enzyme of the present invention is provided as a solid, the solid may be a lyophilized product, an immobilized enzyme (e.g., an enzyme-immobilized material in which the enzyme is immobilized on agarose beads and the like), etc.
Regarding the product of the enzyme of the present invention, the weight concentration of the enzyme of the present invention may be appropriately predetermined. Regarding the product of the enzyme of the present invention, the weight concentration of the enzyme of the present invention may be, for example, 0.001% or more, 0.01% or more, 0.1% or more, 1% or more, 5% or more, 10% or more, 25% or more, or 50% or more. Also, regarding the product of the enzyme of the present invention, the weight concentration of the enzyme of the present invention may be, for example, 100% or less, 75% or less, 50% or less, 25% or less, 10% or less, 5% or less, or 1% or less.
(2) Polypeptide of the Present Invention
The polypeptide of the present invention is a polypeptide having HG-5epi activity. So long as the polypeptide of the present invention has HG-5epi activity, no particular limitation is imposed on the type of polypeptide.
An embodiment of the polypeptide of the present invention may be an embodiment of the enzyme of the present invention.
The polypeptide of the present invention may be, for example, a polypeptide comprising a specific amino acid sequence and having HG-5epi activity.
Specifically, the polypeptide of the present invention may be, for example, a polypeptide selected from the group consisting of the following (A) to (C):
(A) A polypeptide comprising an amino acid sequence (a1) or (a2):

    
    
        (a1) the amino acid sequence defined by amino acid NOs: 1 to 601 in SEQ ID NO: 2, and
        (a2) the amino acid sequence defined by amino acid NOs: 34 to 601 in SEQ ID NO: 2;
    
    


(B) a polypeptide comprising the amino acid sequence equivalent to that of polypeptide (A), except that one or a small number of amino acid residues are substituted, deleted, inserted, and/or added, and having HG-5epi activity; and
(C) a polypeptide comprising the amino acid sequence of a fusion polypeptide formed by adding a peptide tag to the polypeptide (A) or (B), and having HG-5epi activity.
In other words, the polypeptide of the present invention provides the following three embodiments. A first embodiment is a polypeptide comprising the amino acid sequence defined by amino acid NOs: 1 to 601 or 34 to 601 in SEQ ID NO: 2. A second embodiment is a polypeptide comprising the amino acid sequence equivalent to that of the polypeptide of the first embodiment, except that one or a small number of amino acid residues are substituted, deleted, inserted, and/or added, and having HG-5epi activity. A third embodiment is a polypeptide comprising the amino acid sequence of a fusion polypeptide formed by adding a peptide tag to the polypeptide of the first or second embodiment, and having HG-5epi activity.
As used herein, the expression “comprising the amino acid sequence” also encompasses the case of “consisting of the amino acid sequence.”
In the second embodiment, “a small number” refers to the number of amino acid residues that ensures HG-5epi activity, even when that number of amino acid residues are substituted, deleted, inserted, and/or added. For example, the number with respect to all the amino acid residues forming the polypeptide is preferably 10% or less, more preferably 5% or less, still more preferably 2% or less, particularly preferably 1% or less.
More specifically, in the case of the polypeptide consisting of an amino acid sequence defined by amino acid NOs: 1 to 601 in SEQ ID NO: 2, the total number of the amino acid residues is 601. Thus, “a small number” is preferably 2 to 60, more preferably 2 to 30, still more preferably 2 to 12, particularly preferably 2 to 6. In the case of the polypeptide consisting of an amino acid sequence defined by amino acid NOs: 34 to 601 in SEQ ID NO: 2, the total number of the amino acid residues is 568. Thus, “a small number” is preferably 2 to 56, more preferably 2 to 28, still more preferably 2 to 11, particularly preferably 2 to 5. In these polypeptides, “a small number” may be 2, 2 or 3, 2 to 4, or 2 to 5.
The “substitution, deletion, insertion, and/or addition” of the second embodiment is, for example, a conservative variation where HG-5epi activity is not lost. A typical conservative variation is conservative substitution. Conservative substitution is a variation among Phe, Trp, and Tyr, in the case where the substitution occurs at an aromatic amino acid residue; a variation among Leu, Ile, and Val, in the case where the substitution occurs at a hydrophobic amino acid residue; a variation between Gln and Asn, in the case where the substitution occurs at a polar amino acid residue; a variation among Lys, Arg, and His, in the case where the substitution occurs at a basic amino acid residue; a variation between Asp and Glu, in the case where the substitution occurs at an acidic amino acid residue; or a variation between Ser and Thr, in the case where the substitution occurs at an amino acid residue having a hydroxyl group. Specific examples of the substitution which can be recognized as conservative substitution include a substitution of Ala by Ser or Thr; a substitution of Arg by Gln, His, or Lys; a substitution of Asn by Glu, Gln, Lys, His, or Asp; a substitution of Asp by Asn, Glu, or Gln; a substitution of Cys by Ser or Ala; a substitution of Gln by Asn, Glu, Lys, His, Asp, or Arg; a substitution of Glu by Gly, Asn, Gln, Lys, or Asp; a substitution of Gly by Pro; a substitution of His by Asn, Lys, Gln, Arg, or Tyr; a substitution of Ile by Leu, Met, Val, or Phe; a substitution of Leu by Ile, Met, Val, or Phe; a substitution of Lys by Asn, Glu, Gln, His, or Arg; a substitution of Met by Ile, Leu, Val, or Phe; a substitution of Phe by Trp, Tyr, Met, Ile, or Leu; a substitution of Ser by Thr or Ala; a substitution of Thr by Ser or Ala; a substitution of Trp by Phe or Tyr; a substitution of Tyr by His, Phe, or Trp; and a substitution of Val by Met, Ile, or Leu.
In other words, for example, the polypeptide of the second embodiment may be a polypeptide which has a homology of 90% or higher with respect to the entire amino acid sequence of the polypeptide of the first embodiment, more preferably 95% or higher, still more preferably 98% or higher, particularly preferably 99% or higher, and which has HG-5epi activity. In the present invention, “homology” may also refer to “identity.”
The “peptide tag” described in the third embodiment refers to a peptide consisting of an amino acid sequence for facilitating detection or purification of protein. No particular limitation is imposed on the length and amino acid sequence of the “peptide tag,” so long as the fusion polypeptide formed by adding the peptide tag to the polypeptide of the first or second embodiment does not lose HG-5epi activity. Examples of the peptide tag include FLAG (registered trademark) peptide (FLAG tag), 6×His peptide (His.Tag (registered trademark)), c-myc peptide (myc tag), protein A, MBP (maltose-binding protein), and GST (glutathione-S-transferase). Of these, FLAG peptide (SEQ ID NO: 32) is preferred.
The “peptide tag” may be directly added to the polypeptide of the first or second embodiment, or added thereto via a peptide linker consisting of any amino acid sequence. Similar to the case of peptide tag, no particular limitation is imposed on the length and amino acid sequence of the “peptide linker,” so long as the fusion polypeptide formed by adding the peptide tag to the polypeptide of the first or second embodiment does not lose HG-5epi activity. Examples of the peptide linker include the dipeptide formed of N-terminal asparagine and C-terminal serine, and the dipeptide formed of N-terminal valine and C-terminal aspartic acid.
Also, the “peptide tag” may be added to either the N-terminus or the C-terminus of the polypeptide of the first or second embodiment, or to both terminuses. Preferably, the “peptide tag” is added to only the N-terminus of the polypeptide.
The polypeptide of the present invention is a polypeptide having HG-5epi activity. Whether or not the polypeptide has HG-5epi activity can be determined through a method as described in, for example, the below-mentioned <Example 14>, <Example 16>, <Example 17>, <Example 20>, or <Example 21>. Through employment of any of these methods, the polypeptide of the second or third embodiment can be selected. Namely, the polypeptide of the second embodiment may be obtained by, for example, selecting parts of the amino acid residues into which substitution, deletion, insertion, and/or addition of one or a small number of amino acid residues can be introduced without losing HG-5epi activity from the amino acid sequence of the polypeptide of the first embodiment, based on the presence or absence of HG-5epi activity as an index. Also, the polypeptide of the third embodiment may be obtained by, for example, selecting an amino acid sequence to which a peptide tag can be added without losing HG-5epi activity from the amino acid sequence of the polypeptide of the first or second embodiment, based on the presence or absence of HG-5epi activity as an index.
So long as the polypeptide of the present invention has HG-5epi activity, the polypeptide may have an additional activity of epimerizing a HexA residue adjacent to a GlcNAc residue of another polysaccharide (i.e. polysaccharide other than NAH or CDSNAc-HEP) including a disaccharide formed of a GlcNAc residue and a HexA residue.
The polypeptide of the present invention may have C5-epi activity or may have substantially no C5-epi activity. The presence or absence of C5-epi activity may be determined through a method as described in, for example, the below-mentioned <Example 15> or <Example 18>.
The polypeptide of the present invention may have an optimum pH of 5.5 to 6.0 for HG-5epi activity. The optimum pH may be determined through a method as described in, for example, the below-mentioned <Example 22>.
The polypeptide of the present invention may substantially lose HG-5epi activity in the presence of 0.1% (w/v) or more of sodium deoxycholate.
The polypeptide of the present invention may have a feature that HG-5epi activity decreases depending on alkali metal chloride concentration and/or alkaline earth metal chloride concentration (that is, HG-5epi activity decreases as alkali metal chloride concentration and/or alkaline earth metal chloride concentration increases). Examples of “alkali metal chloride” include sodium chloride. Examples of “alkaline earth metal chloride” include magnesium chloride, calcium chloride, and manganese chloride. This feature may be significant in the case of alkaline earth metal chlorides, especially calcium chloride among them. Also, this feature may be, for example, a feature that HG-5epi activity is substantially lost in the presence of 64 mM or more of calcium chloride.
As used herein, the expression “HG-5epi activity is substantially lost” may refer to, for example, the HG-5epi activity in the presence of a target substance (e.g., sodium deoxycholate, alkali metal chloride, or alkaline earth metal chloride) being 10% or less, 5% or less, 2% or less, or 1% or less of the HG-5epi activity in the absence of the target substance.
Whether or not HG-5epi activity has been substantially lost may be determined through, for example, a method employing a radioisotope as described in the below-mentioned <Example 23> or <Example 24>. In this case, the expression “HG-5epi activity is substantially lost” may refer to, for example, the following feature. Specifically, a polypeptide is brought into contact with a target polysaccharide (e.g., [5-3H]NAH) in which the hydrogen atom at 5-position of HexA residues has been substituted by 3H (tritium) in the presence of a target substance (e.g., sodium deoxycholate, alkali metal chloride, or alkaline earth metal chloride). The target polysaccharide (e.g., [5-3H]NAH) is removed from each of the reaction mixtures before and after the contact process, and each resultant solution is fed to a scintillation counter. The radioactivity of 3H2O of each solution, formed during the course of epimerization of HexA residues of the target polysaccharide (e.g., [5-3H]NAH) by HG-5epi activity, is measured. In comparison of the two solutions, there is no significant difference between two measurements (dpm). For example, the expression “HG-5epi activity is substantially lost” may refer to the measurement of the solution obtained from the reaction mixture after the contact process being 3 times or less that of the solution obtained from the reaction mixture before the contact process. Notably, [5-3H]NAH may be prepared through, for example, a method as described in the below-mentioned <Example 19>.
So long as the polypeptide of the present invention has HG-5epi activity, the polypeptide is not limited to a polypeptide having a specific amino acid sequence as described in any of the first to third embodiments. The polypeptide of the present invention, for example, may be a polypeptide having HG-5epi activity and one or more features as described above.
The polypeptide of the present invention may have the following characteristics (A) to (C):
(A) the polypeptide having HG-5epi activity;
(B) the polypeptide having an optimum pH of 5.5 to 6.0; and
(C) the polypeptide substantially losing HG-5epi activity in the presence of 0.1% (w/v) or more of sodium deoxycholate.
Such a polypeptide may further have one or more features as described above. That is, such a polypeptide may, for example, have an additional activity of epimerizing a HexA residue adjacent to a GlcNAc residue of another polysaccharide (i.e. polysaccharide other than NAH or CDSNAc-HEP) including a disaccharide formed of a GlcNAc residue and a HexA residue. Also, such a polypeptide may have, for example, C5-epi activity or may have substantially no C5-epi activity. Furthermore, such a polypeptide may have, for example, a feature that the activity decreases depending on the alkali metal chloride concentration and/or the alkaline earth metal chloride concentration.
The polypeptide of the present invention may be prepared through, for example, a genetic technique by use of the below-mentioned host cell of the present invention. Examples of the “genetic technique” include a method employing insect cells as described in the below-mentioned <Example 6> to <Example 13>.
(3) Nucleic Acid of the Present Invention
The nucleic acid of the present invention is a nucleic acid encoding the enzyme of the present invention or the polypeptide of the present invention. As described above, an embodiment of the polypeptide of the present invention may be an embodiment of the enzyme of the present invention. Thus, an embodiment of the nucleic acid of the present invention may be a nucleic acid encoding the enzyme of the present invention. No particular limitation is imposed on the nucleic acid of the present invention, so long as the nucleic acid encodes the polypeptide of the present invention. So long as the nucleic acid of the present invention encodes the polypeptide of the present invention, the nucleic acid encompasses all the nucleic acids consisting of different nucleotide sequences resulting from genetic code degeneration.
The “nucleic acid” encompasses DNA and RNA. Also, the nucleic acid of the present invention may be a double strand nucleic acid or a single strand nucleic acid. In the case of the double strand, a hybrid nucleic acid formed of DNA and RNA is acceptable. So long as the nucleic acid of the present invention encodes the polypeptide of the present invention, the nucleic acid may be a nucleic acid which includes intron sequences in a domain encoding the polypeptide of the present invention, or a nucleic acid which includes no intron sequence in a domain encoding the polypeptide of the present invention. Examples of the nucleic acid of the present invention include mRNA (mRNA precursor or mature mRNA) derived from Achatina fulica, and cDNA synthesized through reverse transcription of mRNA. The nucleic acid of the present invention may be an isolated nucleic acid.
The nucleic acid of the present invention may be, for example, a nucleic acid which comprises a specific nucleotide sequence and which encodes a polypeptide having HG-5epi activity.
Specifically, the nucleic acid of the present invention may be, for example, a DNA selected from the group consisting of the following (A) to (C):
(A) a DNA comprising the nucleotide sequence (a1) or (a2):

    
    
        (a1) the nucleotide sequence defined by base NOs: 1 to 1,806 in SEQ ID NO: 1, and
        (a2) the nucleotide sequence defined by base NOs: 100 to 1,806 in SEQ ID NO: 1;
    
    


(B) a DNA hybridizing with the DNA consisting of the nucleotide sequence complementary to that of the DNA (A) under a stringent condition, and encoding a polypeptide having HG-5epi activity; and
(C) a DNA comprising the nucleotide sequence of a fusion DNA formed by adding the DNA encoding a peptide tag to the DNA (A) or (B), and encoding a polypeptide having HG-5epi activity.
In other words, the nucleic acid of the present invention provides the following three embodiments. A first embodiment is a DNA comprising the nucleotide sequence defined by base NOs: 1 to 1,806 or 100 to 1,806 in SEQ ID NO: 1. A second embodiment is a DNA hybridizing with the DNA consisting of the nucleotide sequence complementary to that of the DNA of the first embodiment under a stringent condition, and encoding a polypeptide having HG-5epi activity. A third embodiment is a DNA comprising the nucleotide sequence of a fusion DNA formed by adding the DNA encoding a peptide tag to the DNA of the first or second embodiment, and encoding a polypeptide having HG-5epi activity. Such DNAs may be isolated DNAs.
As used herein, the expression “comprising the nucleotide sequence” also encompasses the case of “consisting of the nucleotide sequence.”
The DNA of the first embodiment may be produced through, for example, a method as described in the below-mentioned <Example 1> to <Example 5>. Alternatively, the DNA of the first embodiment may be produced through a polymerase chain reaction (PCR) employing designed oligonucleotides based on the nucleotide sequence defined by SEQ ID NO: 1 as primers, in which DNA fragments are amplified by use of a nucleic acid (chromosomal DNA or cDNA) derived from Achatina fulica as a template.
In the second embodiment, the term “stringent conditions” generally refers to the conditions under which a specific hybrid is formed but a non-specific hybrid is not formed. In other words, the term “stringent conditions” refers to conditions under which a specific hybrid with a DNA having a nucleotide sequence complementary to that of the DNA of the first embodiment is formed. An example of such conditions is conditions under which DNA fragments having a high homology (e.g., a homology of 80% or higher, preferably 90% or higher, more preferably 95% or higher, still more preferably 97% or higher, particularly preferably 99% or higher) are hybridized with each other, and DNA fragments having a homology lower than the level are not hybridized with each other. Examples of such conditions include conditions generally employed in washing of southern hybridization; i.e., conditions of washing once, desirably 2 or 3 times, at a salt concentration and temperature corresponding to 60° C., 1×SSC, 0.1% SDS, desirably 60° C., 0.1×SSC, 0.1% SDS, more desirably 68° C., 0.1×SSC, 0.1% SDS. Examples of such conditions further include conditions including hybridization at 42° C. in a solution formed of 50% formamide, 4×SSC, 50 mM HEPES-NaOH (pH: 7.0), 10×Denhardt's solution, and 100 μg/mL salmon sperm DNA; washing at room temperature with a solution formed of 2×SSC and 0.1% SDS; and further washing at 50° C. with a solution formed of 0.1×SSC and 0.1% SDS (Sambrook J., et al., Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989)).
The DNA of the second embodiment may be prepared, for example, by introducing, into the nucleotide sequence of the DNA of the first embodiment, substitution, deletion, insertion, and/or addition of nucleic acid residues (hereinafter collectively referred to as “introduction of variation”). The “introduction of variation” may be performed through, for example, a known technique.
The “introduction of variation” may be carried out through, for example, a technique employing restriction enzymes and a T4DNA ligase. More specifically, the technique includes limitedly digesting by restriction enzymes both terminuses of a DNA fragment having a nucleotide sequence into which a variation has been introduced so as to encode a polypeptide consisting of an objective amino acid sequence; mixing the digested product with a vector into which the nucleotide sequence consisting of SEQ ID NO: 1 has been subcloned, and which has been limitedly digested with the same restriction enzymes; and ligating the two components by use of a T4DNA ligase, to thereby yield a DNA into which the variation has been introduced. The “DNA fragment having a nucleotide sequence into which a variation has been introduced” may be obtained through, for example, a PCR employing as a primer an oligonucleotide into which such a variation has been introduced. Alternatively, the above DNA fragment may also be obtained by mixing, in an aqueous solution, two complementary oligonucleotides which have been synthesized to have sequences into which a variation has been introduced at specific bases; heating the mixture at 90 to 100° C. for 1 to 2 minutes; and cooling the mixture to room temperature.
An alternative example of a method for “introduction of variation” is a site-specific variation introduction method. Examples of the site-specific variation introduction method include a PCR-based method (Higuchi, R., 61, in PCR technology, Erlich, H. A. Eds., Stockton press (1989); Carter, P., Meth. in Enzymol., 154, 382 (1987)), and a method employing a phage (Kramer, W. and Frits, H. J., Meth. in Enzymol., 154, 350 (1987); Kunkel, T. A. et al., Meth. in Enzymol., 154, 367 (1987)). Specifically, for example, the site-specific variation introduction method may be carried out by means of KOD-Plus-Mutagenesis Kit (Product of Toyobo).
The “peptide tag” of the third embodiment is the same as the peptide tag which is described in detail in the above-mentioned “(2) polypeptide of the present invention.” Thus, so long as the encoded polypeptide has HG-5epi activity, a fusion DNA to which a DNA encoding the peptide tag has been added also falls within the scope of the nucleic acid of the present invention. The “DNA encoding the peptide tag” may be a DNA encoding only a peptide tag or a fusion DNA consisting of a DNA encoding a peptide tag and another DNA encoding a linker sequence.
Alternatively, the nucleic acid of the present invention may also be yielded through total chemical synthesis of the nucleotide sequence thereof.
The polypeptide encoded by the nucleic acid of the present invention has HG-5epi activity. The polypeptide encoded by the nucleic acid of the present invention may be prepared by the method described in the above-mentioned “(2) Polypeptide of the present invention.” The presence or absence of HG-5epi activity of the polypeptide encoded by the nucleic acid of the present invention may be determined through the method described in the above-mentioned “(2) Polypeptide of the present invention.”
(4) Vector of the Present Invention
The vector of the present invention is a vector including the nucleic acid of the present invention. The vector of the present invention may include one type of the nucleic acid of the present invention or two or more members of the nucleic acid of the present invention. The vector of the present invention may include one copy of the nucleic acid of the present invention or two or more copies thereof.
As used herein, the term “vector” refers to a nucleic acid molecule employed for incorporating the nucleic acid of the present invention into a host cell. No particular limitation is imposed on the vector, so long as there can be attained amplification of the nucleic acid of the present invention or expression of the polypeptide encoded by the nucleic acid of the present invention, in the host cell. Examples of the vector include a phage, a plasmid, and a virus. The vector may be appropriately chosen in accordance with factors such as the type of host cells, and the desired expression level of the polypeptide encoded by the nucleic acid of the present invention. For example, when a prokaryotic cell such as a bacterium cell is used as a host cell, a phage or a plasmid can be suitably used as a vector. Also, for example, when a eukaryotic cell such as an insect cell is used as a host cell, a plasmid or a virus can be suitably used as a vector.
Examples of the phage which can be employed in bacterium cells include phage particles in which a plasmid serving as a phage DNA is packaged. Examples of the plasmid which can be employed in bacterium cells include pBlue Script II SK(+). Examples of the plasmid which can be employed in insect cells or the like include pIZ-V5 (product of Life Technologies Corporation).
Examples of the virus employable in insect cells or the like include Baculovirus. Baculovirus is preferably nuclear polyhedrosis virus (NPV). Examples of NPV include Autographa californica NPV (AcNPV) and Bombyx mori NPV (BmNPV). Of these, AcNPV is preferred. Through infecting, in a routine manner, a host cell (e.g., an insect cell) with a virus into which the nucleic acid of the present invention has been incorporated, the resultant host cell can harbor the nucleic acid of the present invention and allows expression of the polypeptide encoded by the nucleic acid of the present invention.
The nucleic acid of the present invention may be incorporated into a phage through a conventional technique. An example of the method for incorporating the nucleic acid of the present invention into a phage is a technique described in the below-mentioned <Example 2>. In one specific manner, for example, a phage DNA including the nucleic acid of the present invention is packaged in phage particles. More specifically, for example, any two of the restriction enzyme sites present in the multi-cloning site of a plasmid serving as a phage DNA are selected, and the plasmid and the nucleic acid of the present invention are limitedly digested with the restriction enzymes, followed by ligation. An example of the plasmid is Lambda ZAP II. The nucleic acid of the present invention may be a DNA prepared through PCR employing oligonucleotides in each of which a restriction enzyme site has been added to the 5′ end, as primers. Alternatively, such a restriction enzyme site may be incorporated into the nucleic acid of the present invention through ligation of a DNA fragment having a structure generated by limited digestion with a restriction enzyme at the 5′ end, to the nucleic acid of the present invention serving as another DNA fragment.
The nucleic acid of the present invention may be incorporated into a plasmid through a conventional technique. An example of the method for incorporating the nucleic acid of the present invention into a plasmid is a technique described in the below-mentioned <Example 6> or <Example 10>. In one specific manner, for example, any two of the restriction enzyme sites present in the multi-cloning site of a plasmid are selected, and the plasmid and the nucleic acid of the present invention are limitedly digested with the restriction enzymes, followed by ligation. The nucleic acid of the present invention may be a DNA prepared through PCR employing oligonucleotides in each of which a restriction enzyme site has been added to the 5′ end, as primers. Alternatively, such a restriction enzyme site may be incorporated into the nucleic acid of the present invention through ligation of a DNA fragment having a structure generated by limited digestion with a restriction enzyme at the 5′ end, to the nucleic acid of the present invention serving as another DNA fragment.
The nucleic acid of the present invention may be incorporated into a virus through a conventional technique. For example, incorporation of the nucleic acid of the present invention to a virus may be carried out by preparing a bacmid. More specifically, for example, a bacterium for preparing a bacmid is transformed by use of a donor plasmid into which the nucleic acid of the present invention has been incorporated, to thereby prepare a bacmid into which the nucleic acid of the present invention has been incorporated. Examples of the bacterium for preparing a bacmid include E. coli DH10Bac strain. Examples of the donor plasmid include pFastBac1. When a host cell (e.g., an insect cell) is transfected with the thus-prepared bacmid, the bacmid functions as a virus as it is.
Alternatively, for example, the nucleic acid of the present invention may be incorporated into a virus by use of a plasmid called a transfer vector. In one specific manner, for example, a host cell (e.g., an insect cell) is co-transfected with a viral genome and a transfer vector into which the nucleic acid of the present invention has been incorporated, to thereby prepare a virus into which the nucleic acid of the present invention has been incorporated. Examples of the transfer vector include pPSC8 (product of Protein Science) and pVL1393 (product of AB vector).
(5) Host Cell of the Present Invention
The host cell of the present invention is a host cell harboring the nucleic acid of the present invention and/or the vector of the present invention (hereinafter the nucleic acid and the vector are collectively referred to as “the vector or the like of the present invention”). Notably, since the vector of the present invention includes the nucleic acid of the present invention, a host cell harboring the vector of the present invention also falls within a host cell harboring the nucleic acid of the present invention. The host cell of the present invention may harbor one species of the vector or the like of the present invention or two or more species of the vector or the like of the present invention. The host cell of the present invention may harbor one copy of the vector or the like of the present invention or two or more copies of the vector or the like of the present invention. The host cell of the present invention may harbor the vector or the like of the present invention on the chromosome thereof or outside the chromosome thereof. Needless to say, the host cell of the present invention may harbor the vector or the like of the present invention on the chromosome thereof and outside the chromosome thereof. The host cell of the present invention may be a host cell transfected by use of the vector or the like of the present invention. As used herein, the term “host cell” refers to a cell for use as a host in amplification of the vector or the like of the present invention or in expression of a polypeptide encoded by the vector or the like of the present invention. No particular limitation is imposed on the host cell, so long as the host cell can be transfected by the vector or the like of the present invention. The host cell is preferably an isolated cell. The host cell may be appropriately selected in accordance with the purpose of the use of the vector or the like of the present invention.
In order to amplify the vector or the like of the present invention, the host cell is, for example, preferably a prokaryotic cell; e.g., a bacterium cell. Among such bacterium cells, Escherichia coli is preferred. Examples of the Escherichia coli strain include XL-1 Blue MRF′ strain, JM109 strain, and DH5α strain.
In the expression of a polypeptide encoded by the vector or the like of the present invention, the host cell may be, for example, a host cell generally employed in heterologous expression of a protein. The host cell is, for example, preferably a eukaryotic cell; e.g., an insect cell, an animal cell, a plant cell, or a yeast cell. Of these, an insect cell is preferred. Examples of the insect cell include Sf9 cell, Sf21 cell, and SF+ cell, each derived from Spodoptera frugiperda, and High Five cell, derived from Trichoplusia ni. The insect cell is preferably a cell derived from Spodoptera frugiperda. Among them, Sf21 cell is preferred.
Transfection of the host cell may be carried out through a conventional technique. No particular limitation is imposed on the method for transfecting the host cell, so long as the vector or the like of the present invention can be incorporated into the host cell. Specific examples of the host cell transfection method include the calcium phosphate method, lipofection method, the DEAE dextran method, electroporation method, and micro-injection method. Of these, lipofection method is preferred. Lipofection method is preferably performed by use of Cellfectin II Reagent.
(6) Polypeptide Production Method of the Present Invention
The polypeptide of the present invention can be produced by use of, for example, the host cell of the present invention. Specifically, the polypeptide of the present invention can be produced through, for example, the method for producing a polypeptide, the method comprising the following (A) and (B) (hereinafter the production method may be referred to as “the polypeptide production method of the present invention”):
(A) a step of expressing a polypeptide having HG-5epi activity by using the host cell; and
(B) a step of recovering the polypeptide expressed in the step (A).
In step (A), the host cell of the present invention is cultured, and a polypeptide which has HG-5epi activity (i.e., the polypeptide of the present invention) and which is encoded by the vector or the like of the present invention is expressed.
A specific example of step (A) may include culturing Sf21 cells obtained by the following procedures: transforming E. coli DH10Bac cells with pFastBac1 into which the nucleic acid of the present invention has been incorporated; extracting a bacmid from the transformant; and transfecting Sf21 cell with the bacmid by lipofection method.
No particular limitation is imposed on the culture conditions under which the host cell is cultured, so long as the polypeptide of the present invention encoded by the vector or the like of the present invention can be expressed. The culture conditions may be appropriately selected in accordance with the type of the host cell, the desired expression level of the polypeptide of the present invention encoded by the vector or the like of the present invention, etc. For example, in the case of culturing an insect cell, a culture medium generally employed in insect cells may be used. Examples of the culture medium include a commercial serum-free medium for insect cell culture; specifically, Sf900III serum-free medium. In one mode, for example, culture may be performed at 27° C. to 28° C. with shaking.
In step (B), the polypeptide of the present invention expressed by the host cell in step (A) is recovered. As used herein, the term “recovery” or “recovering” refers to obtaining a fraction containing the polypeptide of the present invention from the culture broth of the host cell. More specifically, in the case where the polypeptide of the present invention is secreted to the outside of the cells, the culture broth itself may be recovered as the polypeptide of the present invention. Alternatively, the supernatant after centrifugation of the culture broth may be recovered as the polypeptide of the present invention. Yet alternatively, the fraction obtained by purifying the culture broth through column or the like may also be recovered as the polypeptide of the present invention.
In the case where the expressed polypeptide of the present invention is accumulated inside the cells, an extract obtained by disrupting the cells may be recovered as the polypeptide of the present invention, or a fraction obtained by purifying the extract by means of a column or the like may also be recovered as the polypeptide of the present invention. In the case where the expressed polypeptide of the present invention is accumulated in the cell membrane, the cells themselves may be recovered as the polypeptide of the present invention, or a disrupted product of the cells may be recovered as the polypeptide of the present invention. The “disruption” may be performed through an appropriate technique in accordance with the type of host cells. Examples of the disruption technique include homogenization method, ultrasonication method, freezing and thawing method, and surfactant-addition method. These techniques may be appropriately employed in combination.
Purification may be performed through a known technique as employed in isolation and purification of protein. Examples of such techniques include precipitation with ammonium sulfate, gel filtration chromatography, ion exchange chromatography, hydrophobic interaction chromatography, hydroxyapatite chromatography, and affinity chromatography. Particularly when a peptide tag has been added to the polypeptide of the present invention, the polypeptide may be purified through affinity chromatography based on the affinity with respect to the tag. These techniques may be appropriately employed in combination.
The purification may be performed to a desired extent. The weight concentration of the polypeptide of the present invention in the recovered fraction may be, for example, 0.001% or higher, 0.01% or higher, 0.1% or higher, 1% or higher, 5% or higher, 10% or higher, 25% or higher, or 50% or higher. Also, the weight concentration of the polypeptide of the present invention in the recovered fraction may be, for example, 100% or lower, 75% or lower, 50% or lower, 25% or lower, 10% or lower, 5% or lower, or 1% or lower.
Whether or not the thus-recovered fraction contains the polypeptide of the present invention may be determined through the method as described in the aforementioned “(2) Polypeptide of the present invention.” That is, the presence or absence of HG-5epi activity is checked. Alternatively, whether or not the thus-recovered fraction contains the polypeptide of the present invention may be determined through western blotting employing an antibody which can bind to the polypeptide of the present invention. Western blotting may be performed through a method as described in the below-mentioned <Example 9>.
(7) Polysaccharide Production Method of the Present Invention
The polysaccharide production method of the present invention is a method for producing a polysaccharide, in which HexA residues has been epimerized, comprising a step of bringing an enzyme and/or a polypeptide each having HG-5epi activity (hereinafter collectively referred to as “HG-5epi of the present invention”) into contact with a polysaccharide including a disaccharide formed of a GlcNAc residue and a HexA residue. The HG-5epi of the present invention may have C5-epi activity or may have substantially no C5-epi activity. As the HG-5epi of the present invention, one species of enzyme having HG-5epi activity may be used, or two or more species of enzymes each having HG-5epi activity may be used. As the HG-5epi of the present invention, one species of polypeptide having HG-5epi activity may be used, or two or more species of polypeptides each having HG-5epi activity may be used. As the HG-5epi of the present invention, one or more species of enzymes each having HG-5epi activity and one or more species of polypeptides each having HG-5epi activity may be used in combination. Examples of the “enzyme having HG-5epi activity” include the enzyme of the present invention. Examples of the “polypeptide having HG-5epi activity” include the polypeptide of the present invention.
No particular limitation is imposed on the aforementioned “polysaccharide including a disaccharide formed of a GlcNAc residue and a HexA residue,” so long as the polysaccharide serves as a substrate on which the HG-5epi of the present invention acts.
As used herein, the “disaccharide formed of a GlcNAc residue and a HexA residue” refers to a disaccharide in which a GlcNAc residue is bonded to a HexA residue. No particular limitation is imposed on the sequential order of the GlcNAc residue and the HexA residue in the “disaccharide formed of a GlcNAc residue and a HexA residue.” It is sufficient that one molecule of the polysaccharide has at least one “disaccharide formed of a GlcNAc residue and a HexA residue” in the polysaccharide backbone thereof. In other words, one molecule of the polysaccharide may have one or two or more “disaccharides each formed of a GlcNAc residue and a HexA residue” in the polysaccharide backbone thereof. When one molecule of the polysaccharide has two or more “disaccharides each formed of a GlcNAc residue and a HexA residue,” two or more disaccharides may be bonded together to form, in the polysaccharide backbone thereof, a glycan having a length of four or more saccharide residues, or may be bonded by the mediation of another molecule in the polysaccharide backbone of the polysaccharide. As used herein, the “another molecule” refers to, for example, a glycan formed of one or more saccharide residues, other than a disaccharide formed of a GlcNAc residue and a HexA residue.
No particular limitation is imposed on the bonding mode of the GlcNAc residue to the HexA residue in the “disaccharide formed of a GlcNAc residue and a HexA residue,” so long as the HG-5epi of the present invention can act thereon. The bonding mode of the “disaccharide formed of a GlcNAc residue and a HexA residue” is preferably 1-4 glycoside bonding. Regarding anomers of the GlcNAc residue and the HexA residue in the “disaccharide formed of a GlcNAc residue and a HexA residue,” the GlcNAc residue is preferably α-anomer, the GlcA residue is preferably β-anomer, and the IdoA residue is preferably α-anomer.
Specific examples of the “disaccharide formed of a GlcNAc residue and a HexA residue” include a disaccharide having a bond between the GlcNAc residue and the GlcA residue represented by [-4GlcNAcα1-4GlcAβ1-] or [-4GlcAβ1-4GlcNAcα1-]; and a disaccharide having a bond between the GlcNAc residue and the IdoA residue represented by [-4GlcNAcα1-4IdoAα1-] or [-4IdoAα1-4GlcNAcα1-]. Specific examples of the polysaccharide including such a “disaccharide formed of a GlcNAc residue and a HexA residue” include NAH, completely desulfated N-acetylated HS (CDSNAc-HS), CDSNAc-HEP, and ACH (2-0-desulfated AS). Of these, NAH and CDSNAc-HEP are preferred.
As used herein, the “epimerization of HexA residues” refers to epimerization of GlcA residues to IdoA residues and/or epimerization of IdoA residues to GlcA residues. Thus, as used herein, the “polysaccharide in which HexA residues has been epimerized” refers to a polysaccharide obtained through a step of bringing the HG-5epi of the present invention into contact with a polysaccharide including disaccharides formed of a GlcNAc residue and a HexA residue. Specifically, the procedure includes a step of epimerizing the entirety or part of GlcA residues of the disaccharides contained in the polysaccharide backbone into IdoA residues, and/or a step of epimerizing the entirety or part of IdoA residues of the disaccharides contained in the polysaccharide backbone into GlcA residues.
The polysaccharide production method of the present invention encompasses a method of epimerizing HexA residues of disaccharides contained in the polysaccharide backbone including the disaccharides formed of a GlcNAc residue and a HexA residue (i.e., a HexA residue adjacent to a GlcNAc residue), to thereby increase or decrease the IdoA content of the polysaccharide; and a method of producing a polysaccharide employing the epimerization method.
Specific examples of the “polysaccharide in which HexA residues has been epimerized” include a polysaccharide having a structure in which the entirety or part of the GlcA residues of NAH have been epimerized into IdoA residues, and a polysaccharide having a structure in which the entirety or part of the GlcA residues of CDSNAc-HEP have been epimerized into IdoA residues and/or the entirety or part of the IdoA residues of CDSNAc-HEP have been epimerized into GlcA residues.
The “polysaccharide in which HexA residues has been epimerized” may be a polysaccharide having IdoA residues. No particular limitation is imposed on the IdoA content of the “polysaccharide in which HexA residues has been epimerized,” and it can be controlled to be any value in accordance with the conditions under which the HG-5epi of the present invention is brought into contact with a polysaccharide including disaccharides formed of a GlcNAc residue and a HexA residue. In one specific manner, conditions including the amount of the HG-5epi of the present invention added to the reaction and the reaction time are appropriately predetermined, so as to attain desired IdoA content. The term “IdoA content” has the same definition as described in detail in the aforementioned “(1) Enzyme of the present invention.”
The “polysaccharide in which HexA residues has been epimerized” may be a polysaccharide having IdoA content different from that of HEP (IdoA content: 77%) and that of HS (IdoA content: 19%) (Hook M, Lindahl U, Iverius P. H., Biochem. J. 1974 January; 137(1): 33-43.).
The IdoA content of the “polysaccharide in which HexA residues has been epimerized” may be appropriately adjusted. The IdoA content of the “polysaccharide in which HexA residues has been epimerized” may be, for example, 0.1% or more, 1% or more, 5% or more, 10% or more, 20% or more, 25% or more, 30% or more, 35% or more, 40% or more, or 50% or more. The “IdoA content” may also be, for example, 100% or less, 99% or less, 95% or less, 90% or less, 80% or less, 75% or less, 70% or less, 65% or less, 60% or less, 50% or less, 40% or less, 30% or less, 20% or less, 10% or less, 5% or less, or 1% or less. Preferred IdoA content ranges of the “polysaccharide in which HexA residues has been epimerized” include 20% to 75%, 25% to 75%, 30% to 75%, 35% to 75%, 40% to 75%, 20% to 70%, 25% to 70%, 30% to 70%, 35% to 70%, 40% to 70%, 20% to 65%, 25% to 65%, 30% to 65%, 35% to 65%, 40% to 65%, 20% to 60%, 25% to 60%, 30% to 60%, 35% to 60%, and 40% to 60%.
The polysaccharide in which HexA residues has been epimerized and which is obtained through the polysaccharide production method of the present invention is useful as a novel material.
EXAMPLES
The present invention will next be described in detail by way of examples, which should not be construed as limiting the technical scope of the invention thereto.
CDSNAc-HEP, CDSNS-HEP, NAH, and NSH employed in the Examples were obtained through a known method described in documents.
In preparation of CDSNAc-HEP and CDSNS-HEP, completely desulfated heparin (CDS-HEP) was used as an intermediate.
CDS-HEP was produced by desulfating HEP through a known method disclosed in a document. Specifically, HEP derived from the porcine intestine (product of Sigma Aldrich) was subjected to 6-O-desulfation by use of N-methyl-N-(trimethylsilyl)-trifluoroacetamide (MTSTFA) and 2-O-desulfation by lyophilization in the presence of sodium hydroxide (Kariya Y., Herrmann J., Suzuki K., Isomura T., Ishihara M., J. Biochem. 1998 February; 123(2): 240-6.) and to N-desulfation by solvolysis in heated DMSO solvent (Ayotte L., Perlin A. S., Carbohydr. Res. 1986 Jan. 1; 145(2): 267-77.). The thus-obtained CDS-HEP has a structure in which all the sulfate groups of HEP are substantially removed.
CDSNAc-HEP was obtained by subjecting CDS-HEP to N-acetylation by use of acetic anhydride (Danishefsky I., Methods Carbohydr. Chem. 1965; 5: 407-409.).
CDSNS-HEP was obtained by subjecting CDS-HEP to N-sulfation by use of a sulfur trioxide-pyridine complex (Leali D., Belleri M., Urbinati C., Coltrini D., Oreste P., Zoppetti G., Ribatti D., Rusnati M., Presta M., J. Biol. Chem. 2001 Oct. 12; 276(41): 37900-8.).
NAH was obtained by culturing E. coli K5 cells (Serotype O10:K5(L):H4, ATCC 23506) and purifying the culture supernatant, in accordance with a known method described in a document (Japanese Patent Application Laid-Open (kokai) No. 2004-018840).
NSH was obtained by subjecting NAH to N-deacetylation in heated aqueous sodium hydroxide and N-sulfation by use of a sulfur trioxide-pyridine complex (Leali D., Belleri M., Urbinati C., Coltrini D., Oreste P., Zoppetti G., Ribatti D., Rusnati M., Presta M., J. Biol. Chem. 2001 Oct. 12; 276(41): 37900-8.).
Example 1
Isolation of mRNA from the Achatina fulica Mucous Gland
The mRNA of Achatina fulica was obtained through a hot phenol method (e.g., Verwoerd T. C., Dekker B. M., Hoekema A., Nucleic Acids Res. 1989 Mar. 25; 17(6): 2362.) in which the total RNA was extracted from the mucous gland, and the extracted product was purified through a method employing magnetic beads, to thereby isolate mRNA. The specific procedure is described as follows.
The mucous gland was removed through incision of an Achatina fulica by means of a surgical knife and the removed gland was washed with distilled water. The product was placed in a 1.5-mL tube with a screw sealable cap. The contents were frozen by immersing the tube in liquid nitrogen for one minute, and the gland was crushed by means of a homogenizer. To the crushed product, a hot extraction buffer heated at 80 deg C. in a water bath (i.e., a solution obtained by stirring phenol melted by heating in a water bath at 55° C. with a buffer (0.1M LiCl, 100 mM Tris-HCl (pH: 8.0), 10 mM EDTA, 1% SDS) at a ratio of 1:1) (0.5 mL) was added, and the mixture was stirred for 30 seconds by means of a test tube mixer. Subsequently, a chloroform solution (a solution prepared by mixing chloroform with isoamyl alcohol at a ratio of 24:1 under stirring) (0.25 mL) was added to the mixture, and the resultant mixture was further stirred for 30 seconds by means of a test tube mixer.
The thus-obtained solution was centrifuged at 20,000×g for 5 minutes, and an aliquot (0.2 mL) was removed from the supernatant (water layer). The aliquot was transferred to another tube, and 4M LiCl (0.2 mL) was added thereto. The mixture was sufficiently mixed, and the mixture was allowed to stand overnight at −20° C. Thereafter, the mixture was centrifuged at 4° C. and 20,000×g for 5 minutes, and the supernatant was removed, to thereby precipitate total RNA. The precipitated product was dissolved in distilled water (0.25 mL), and 3M CH3COONa (pH: 5.2) (0.025 mL) and ethanol (0.5 mL) were added thereto, followed by mixing. Then, the mixture was centrifuged at 20,000×g for 5 minutes, and the supernatant was removed, to thereby re-precipitate total RNA. The product was washed with 70% ethanol (0.5 mL), and the supernatant was removed. The product was dried under air flow. Thus, again re-precipitated total RNA was prepared.
Distilled water (0.5 mL) was added to the precipitated total RNA, and the precipitates were dissolved by adding distilled water (0.5 mL) with mild pipetting. Then, mRNA derived from the Achatina fulica mucous gland was isolated from the solution by means of PolyATract (registered trademark) mRNA Isolation System (product of Promega) through a procedure in accordance with an attached protocol. Thus, mRNA derived from the Achatina fulica mucous gland was isolated from the solution.
Example 2
Preparation of Achatina fulica cDNA Phage Library
cDNA was obtained from mRNA obtained in the aforementioned <Example 1> by means of AccuScript Hi-Fi cDNA Synthesis Kit (product of Agilent Technologies) through a procedure in accordance with an attached protocol. More specifically, reverse transcription was carried out by use of mRNA obtained in the above <Example 1> as a template, an oligo dT primer to which an XhoI site was added (SEQ ID NO: 6), 5-methyl dCTP, and Moloney murine leukemia virus reverse transcriptase (MMLV-RT). Then, in the presence of RNaseH, nick translation by DNA polymerase I was performed, to thereby yield a double-strand cDNA.
Both ends of the double-strand cDNA were blunted by acting Pfu DNA Polymerase attached to the kit. Then, an EcoRI adaptor (mentioned below) was ligated to the double-strand cDNA by use of DNA Ligation Kit Ver. 2.1 (product of Takara Bio Inc.), through a procedure in accordance with an attached protocol. Subsequently, the cDNA was limitedly digested with a restriction enzyme XhoI (product of Takara Bio Inc.) and purified by use of QIAEX II Gel Extraction Kit (product of Qiagen), through a procedure in accordance with an attached protocol, to thereby yield a cDNA fragment having an EcoRI cohesive end at the 5′ end and an XhoI cohesive end at the 3′ end.
The “EcoRI adaptor” refers to a DNA fragment having, at the 5′ end, a structure which is generated by limited digestion with a restriction enzyme EcoRI. The DNA fragment may be produced by, for example, mixing a DNA fragment consisting of the nucleotide sequence defined by SEQ ID NO: 7 and a DNA fragment consisting of the nucleotide sequence defined by SEQ ID NO: 8 in a solution, heating the mixture at 90 to 100° C. for 1 to 2 minutes, and cooling the mixture to room temperature. Preferably, the 5′ end of the DNA fragment consisting of the nucleotide sequence defined by SEQ ID NO: 8 is phosphorylated, and the product is used in production of the EcoRI adaptor.
Then, the above cDNA fragment and Uni-ZAP XR (a cloning vector prepared by dephosphorylating 5′ end of Lambda ZAP II (product of Agilent Technologies) which was limitedly digested with EcoRI and XhoI) were ligated, by use of DNA Ligation Kit Ver. 2.1, through a procedure in accordance with an attached protocol. Subsequently, the thus-ligated vector was packaged into phage particles by use of Gigapack III Gold Packaging Extract (product of Agilent Technologies), through a procedure in accordance with an attached protocol, to thereby yield Achatina fulica cDNA phage library. The titer of the packaged phage solution was 1.0×107 pfu/mL.
Example 3
Recovery of DNA Fragment Encoding Polypeptide of HG-5Epi
As host cells (host bacterium) to which the cDNA phage library obtained in <Example 2> is to be infected, E. coli XL-1 Blue MRF′ strain (product of Agilent Technologies) was used. Amplification and recovery of the phage were carried out through a plate lysate method, the details of which are mentioned below.
The host bacterium was inoculated to a LB medium (containing 0.2% maltose and 10 mM MgSO4) (20 mL) and was subjected to shake culturing overnight at 37° C., to thereby yield a culture broth having an absorbance of about 1.5 at a wavelength of 600 nm. The cDNA phage library solution obtained in <Example 2> was dispensed in an amount of 30 μL into each of the three test tubes (capacity: 50 mL). The host bacterium culture broth (5 mL) was added to each test tube and mixed with the phage. Thereafter, the test tubes were allowed to stand in a water bath at 37° C. for 15 minutes, whereby the host bacterium was infected with the phage particles.
For forming plaques by culturing the phage-particle-infected host bacterium on a plate, the following stack structure was constructed. Specifically, LB top agar (agar concentration: 0.7%) (35 mL), heated at 45° C., was added to each test tube holding a mixture of the phage particles and the host bacterium, and the contents were rapidly mixed. The agar mixture was stacked on three LB plates (24 cm×24 cm). The plates were subjected to static culturing at 37° C. for 6 hours, for forming plaques.
To each plate on which plaques were formed, a mixture of an SM buffer (0.1M NaCl, 10 mM MgSO4—H2O, 50 mM Tris-HCl (pH: 7.5), and 0.01% gelatin) (50 mL) and chloroform (1 mL) was added, and the plates were allowed to stand overnight at 4° C. The supernatant (40 mL) was recovered from each plate and transferred to a centrifugation tube. Chloroform (2 mL) was added to the tube, and the contents were stirred for several seconds by means of a test tube mixer. The centrifugation tubes were subjected to centrifugation at 8,000×g for 15 minutes, and the supernatants (35 mL/tube) were recovered from the tubes and combined. The thus-obtained solution was used as a phage solution. The titer of the recovered phage solution was 3.4×109 pfu/mL.
Next, λDNA was obtained from the phage solution by means of Lambda Mini Kit (product of Qiagen), through a procedure in accordance with an attached protocol, and PCR was conducted by use of the λDNA (0.5 μg) as a template. In PCR, an oligonucleotide defined by SEQ ID NO: 9, SEQ ID NO: 10, or SEQ ID NO: 11 was used as a sense primer, and in combination, an oligonucleotide defined by SEQ ID NO: 12 or SEQ ID NO: 13 was used as an anti-sense primer. In PCR, gene amplification was performed by use of Ex Taq DNA Polymerase (product of Takara Bio Inc.), through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 2 minutes, (94° C. for 30 seconds, 55° C. for 1 minute, and 72° C. for 2 minutes)×40 cycles, and 72° C. for 5 minutes. As a result, a DNA fragment (about 0.3 kbp) was obtained through PCR employing primers defined by SEQ ID NO: 9 and SEQ ID NO: 13.
This DNA fragment was purified by use of QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol. Then, blunting of the ends of the DNA fragment and phosphorylation of the 5′ ends thereof were performed by use of Blunting Kination Ligation Kit (product of Takara Bio Inc.), through a procedure in accordance with an attached protocol. The thus-treated DNA fragment was purified again. The DNA fragment was then ligated with pBlue Script II SK(+) (product of Agilent Technologies) (hereinafter abbreviated as pBS), which was limitedly digested with a restriction enzyme EcoRV (product of New England Biolabs), followed by dephosphorylation with Alkaline Phosphatase, Calf Intestinal (CIP) (product of New England Biolabs).
By use of the ligation reaction mixture, E. coli JM109 cells (product of Takara Bio Inc.) were transformed. The transformant cells were applied onto an agar layer of a LB medium containing 50 μg/mL ampicillin (hereinafter referred to as LB/Amp), and the cells were statically cultured overnight at 37° C. Any three single colonies were selected from the plate, and each colony was inoculated to a LB/Amp medium (1 mL), followed by shake culturing at 37° C. for 5 hours. An aliquot (0.5 mL) was sampled from the culture and centrifuged at 20,000×g for 1 minute. Through removal of the supernatant, pellets of E. coli were recovered. Separately, an aliquot (10 μL) was taken from the remaining culture and inoculated to a LB/Amp medium (2 mL), followed by shake culturing overnight at 37° C.
The E. coli pellets were subjected to a conventional alkaline lysis mini-prep protocol (Sambrook J., et al., Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press (1989)), to thereby obtain precipitates of a plasmid. The precipitated plasmid was dried in air and dissolved in distilled water (10 μL). Then, while the plasmid was used as a template, PCR was performed by use of T3 primer (SEQ ID NO: 14) and T7 primer (SEQ ID NO: 15). In PCR, gene amplification was performed by use of Ex Taq DNA Polymerase, through a procedure in accordance with an attached protocol. PCR conditions included (94° C. for 30 seconds, 60° C. for 30 seconds, and 72° C. for 1 minutes)×25 cycles. The PCR mixtures were subjected to agarose gel electrophoresis. In all the tested PCR mixtures, a DNA fragment (about 0.4 kbp) was confirmed.
Then, the aforementioned culture (2 mL) obtained through shake culturing overnight was centrifuged at 20,000×g for 1 minute, and the supernatant was removed therefrom, to thereby obtain pellets of E. coli. Thereafter, a plasmid was obtained from the E. coli pellets by use of Wizard (registered trademark) Plus SV Minipreps DNA Purification System (product of Promega), through a procedure in accordance with an attached protocol. In order to analyze the nucleotide sequence of a DNA fragment included in the plasmid, sequencing reaction was performed by use of the plasmid as a template. Specifically, the sequencing reaction was performed by use of BigDye (registered trademark) Terminator v3.1 Cycle Sequencing Kit (product of Applied Biosystems), through a procedure in accordance with an attached protocol. Sequence analysis was performed by means of ABI PRISM (registered trademark) 310 Genetic Analyzer (product of Applied Biosystems). As a result, the DNA was found to have the nucleotide sequence defined by SEQ ID NO: 16.
Example 4
Sequence of DNA Encoding Polypeptide of HG-5Epi
In order to sequence the DNA encoding the polypeptide of HG-5epi, sequencing of 5′ end and 3′ end unknown regions of the DNA fragment obtained in <Example 3> was performed through inverse PCR.
Specifically, the λDNA (6 μg) obtained in the above <Example 3> was limitedly digester with a restriction enzyme BamHI (product of Takara Bio Inc.) and the subjected to agarose gel electrophoresis. A gel portion corresponding to 0.5 to 4.0 kbp was cut out by a scalpel. The gel portion was treated with QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol, whereby a λDNA fragment limitedly digested with BamHI was obtained. Subsequently, a fragment of the λDNA was self-ligated by use of DNA Ligation Kit Ver. 2.1, through a procedure in accordance with an attached protocol. By use of the ligation reaction mixture as a template, PCR was performed with oligonucleotides defined by SEQ ID NOs: 17 and 18 as primers. PCR was performed by use of Ex Taq DNA Polymerase. PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 2 minutes, (94° C. for 30 seconds, 50° C. for 30 seconds, and 72° C. for 3 minutes)×40 cycles, and 72° C. for 5 minutes.
Further, nested PCR was performed by use of the reaction mixture of the inverse PCR as a template. In PCR, oligonucleotides defined by SEQ ID NOs: 19 and 20 were used as primers. PCR was performed by use of Ex Taq DNA Polymerase. PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included (94° C. for 30 seconds, 50° C. for 30 seconds, and 72° C. for 3 minutes)×40 cycles. As a result, a DNA fragment (about 1.8 kbp) was obtained.
Blunting of the ends of the DNA fragment and phosphorylation of the 5′ ends thereof were performed by use of Blunting Kination Ligation Kit, through a procedure in accordance with an attached protocol. Then, the DNA fragment was purified by use of Micropure EZ Enzyme Removers (product of Millipore). The DNA fragment was then ligated to pBS, which was limitedly digested with EcoRV, followed by dephosphorylation with CIP.
By use of the ligation reaction mixture, E. coli JM109 cells were transformed. The transformant cells were applied onto a plate of a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C., to thereby obtain a single colony. The colony was inoculated to a LB/Amp medium (4 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a plasmid was obtained from the E. coli pellets by use of QIAprep Spin Miniprep Kit (product of Qiagen), through a procedure in accordance with an attached protocol. In order to analyze the nucleotide sequence of a DNA fragment included in the plasmid, sequencing reaction was performed by use of the plasmid as a template. Specifically, the sequencing reaction was performed by use of BigDye Terminator v3.1 Cycle Sequencing Kit, through a procedure in accordance with an attached protocol. Sequence analysis was performed by means of ABI PRISM 310 Genetic Analyzer. The analysis has revealed that the DNA fragment obtained through nested PCR is a DNA having, at both ends thereof, a part of the nucleotide sequence obtained in <Example 3> and defined by SEQ ID NO: 16. Through the analysis, the nucleotide sequences of both ends of cDNA including the nucleotide sequence defined by SEQ ID NO: 16 in the self-ligated λDNA fragment were also determined.
Next, PCR cloning was performed by use of primers which can be annealed to the respective ends of the cDNA, so as to recover the full-length DNA encoding HG-5epi. Specifically, PCR was performed by use of oligonucleotides defined by SEQ ID NOs: 21 and 22 as primers and λDNA (0.5 μg) prepared in <Example 3> as a template. PCR was performed by use of PfuTurbo DNA Polymerase (product of Agilent Technologies). PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 2 minutes, (94° C. for 30 seconds, 55° C. for 30 seconds, and 72° C. for 2 minutes)×40 cycles, and 72° C. for 5 minutes. As a result, a DNA fragment (about 1.1 kbp) was obtained.
This DNA fragment was purified by use of QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol. Subsequently, blunting of the ends of the DNA fragment and phosphorylation of the 5′ ends thereof were performed by use of Blunting Kination Ligation Kit, through a procedure in accordance with an attached protocol. The thus-treated DNA fragment was purified again. The DNA fragment was then ligated with pBS, which was limitedly digested with EcoRV, followed by dephosphorylation with CIP.
By use of the ligation reaction mixture, E. coli JM109 cells were transformed. The transformant cells were applied onto a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C. Three single colonies were selected, and each colony was inoculated to a LB/Amp medium (4 mL), followed by shake culturing overnight at 37° C. The culture was centrifuged at 20,000×g for 1 minute. Through removal of the supernatant, pellets of E. coli were recovered. Thereafter, a plasmid was obtained from the E. coli pellets by use of Wizard Plus SV Minipreps DNA Purification System, through a procedure in accordance with an attached protocol. In order to analyze the nucleotide sequence of a DNA fragment included in the plasmid, sequencing reaction was performed by use of the plasmid as a template. Specifically, the sequencing reaction was performed by use of BigDye Terminator v3.1 Cycle Sequencing Kit, through a procedure in accordance with an attached protocol. Sequence analysis was performed by means of ABI PRISM 310 Genetic Analyzer. As a result, the DNA obtained through PCR cloning was found to have the nucleotide sequence defined by SEQ ID NO: 23.
However, when the amino acid sequence of HG-5epi deduced from the nucleotide sequence defined by SEQ ID NO: 23 was compared with the amino acid sequence of a known C5-epi (described in Referential Example 1), the nucleotide sequence defined by SEQ ID NO: 23 was conceived to be incomplete due to lack of a region encoding the N-terminus side of HG-5epi. Thus, in order to sequence the 5′-terminal sequence of cDNA including the nucleotide sequence defined by SEQ ID NO: 23, an unknown region of DNA was amplified through the 5′ RACE technique. Preparation of cDNA serving as a template of 5′ RACE reaction and 5′ RACE reaction itself were conducted by use of Marathon(registered trademark) cDNA Amplification Kit (product of Clontech), through a procedure in accordance with an attached protocol. As the RNA serving as a material of cDNA synthesis, mRNA (0.5 μg) purified in <Example 1> was used. Oligonucleotides defined by SEQ ID NOs: 24 and 25 were used as primers. A dilute of cDNA to which Marathon cDNA adaptor was bonded was used as a template. PCR was performed by use of Advantage (registered trademark) 2 Polymerase mix (product of Clontech). PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 30 seconds, (94° C. for 5 seconds, 72° C. for 4 minutes)×5 cycles, (94° C. for 5 seconds, 70° C. for 4 minutes)×5 cycles, and (94° C. for 5 seconds, 68° C. for 4 minutes)×25 cycles.
Further, nested PCR was performed by use of the 5′ RACE reaction mixture as a template. In PCR, oligonucleotides defined by SEQ ID NOs: 26 and 27 were used as primers. PCR was performed by use of Advantage 2 Polymerase mix. PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 30 seconds, (94° C. for 5 seconds, 72° C. for 4 minutes)×5 cycles, (94° C. for 5 seconds, 70° C. for 4 minutes)×5 cycles, and (94° C. for 5 seconds, 68° C. for 4 minutes)×25 cycles. As a result, a DNA fragment (about 1.2 kbp) was obtained.
This DNA fragment was purified by use of QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol. Subsequently, blunting of the ends of the DNA fragment and phosphorylation of the 5′ ends thereof were performed by use of Blunting Kination Ligation Kit, through a procedure in accordance with an attached protocol. The thus-treated DNA fragment was purified again. The DNA fragment was then ligated with pBS, which was limitedly digested with a restriction enzyme EcoRV, followed by dephosphorylation with CIP.
By use of the ligation reaction mixture, E. coli JM109 cells were transformed. The transformant cells were applied onto a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C. Three single colonies were selected, and each colony was inoculated to a LB/Amp medium (4 mL), followed by shake culturing overnight at 37° C. The culture was centrifuged at 20,000×g for 1 minute. Through removal of the supernatant, pellets of E. coli were recovered. Thereafter, a plasmid was obtained from the E. coli pellets by use of Wizard Plus SV Minipreps DNA Purification System, through a procedure in accordance with an attached protocol. In order to analyze the nucleotide sequence of a DNA fragment included in the plasmid, sequencing reaction was performed by use of the plasmid as a template. Specifically, the sequencing reaction was performed by use of BigDye Terminator v3.1 Cycle Sequencing Kit, through a procedure in accordance with an attached protocol. Sequence analysis was performed by means of ABI PRISM 310 Genetic Analyzer. As a result, the DNA obtained through 5′ RACE reaction was found to have the nucleotide sequence defined by SEQ ID NO: 28.
Example 5
Cloning of DNA Encoding Full-Length Polypeptide of HG-5Epi
The pBSs ligated with the DNA fragments of HG-5epi obtained in the above <Example 4> were each limitedly digested with the same restriction enzymes, followed by ligation, whereby a vector (pBS/HG-5epi), into which a DNA encoding the full-length HG-5epi was sub-cloned, was produced. The specific procedure is as follows.
The pBS ligated with a DNA consisting of the nucleotide sequence defined by SEQ ID NO: 28 was limitedly digested with EcoRI (product of Takara Bio Inc.) and EcoRV, to thereby obtain a DNA fragment (about 1.2 kbp) including a DNA encoding the N-terminal side of HG-5epi. The DNA fragment was purified by use of QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol.
Also, the pBS ligated with a DNA consisting of the nucleotide sequence defined by SEQ ID NO: 23 was limitedly digested with EcoRI and EcoRV, to thereby obtain a DNA fragment (about 3.7 kbp) including a DNA encoding the C-terminal side of HG-5epi and a DNA of pBS. The DNA fragment was purified by use of QIAEX II Gel Extraction Kit, through a procedure in accordance with an attached protocol. Subsequently, the DNA fragment was dephosphorylated with CIP and purified again.
Notably, EcoRI cleaves one site of pBS. EcoRV cleaves one site of an overlapping region between the DNA consisting of the nucleotide sequence defined by SEQ ID NO: 28 and the DNA consisting of the nucleotide sequence defined by SEQ ID NO: 23. Therefore, through ligation of the above-produced two DNA fragments, a DNA encoding the full-length HG-5epi sub-cloned into pBS can be yielded.
The thus-produced two DNA fragments were ligated by use of DNA Ligation Kit Ver. 2.1, through a procedure in accordance with an attached protocol. By use of the ligation reaction mixture, E. coli JM109 cells were transformed. The transformant cells were applied onto a plate of a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C., to thereby obtain a single colony. The colony was inoculated to a LB/Amp medium (4 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a plasmid was obtained from the E. coli pellets by use of QIAprep Spin Miniprep Kit, through a procedure in accordance with an attached protocol. In order to analyze the nucleotide sequence of a DNA fragment included in the plasmid, sequencing reaction was performed by use of the plasmid as a template. Specifically, the sequencing reaction was performed by use of BigDye Terminator v3.1 Cycle Sequencing Kit, through a procedure in accordance with an attached protocol. Sequence analysis was performed by means of ABI PRISM 310 Genetic Analyzer. The analysis has revealed that a DNA sub-cloned into pBS included the nucleotide sequence defined by SEQ ID NO: 1.
Referential Example 1
Homology of Known C5-Epi to HG-5Epi
Homology of the amino acid sequence (SEQ ID NO: 2) of HG-5epi encoded by the DNA consisting of the nucleotide sequence defined by SEQ ID NO: 1 with respect to the amino acid sequence of a known C5-epi was analyzed by GENETYX (registered trademark) Ver. 11 (product of Genetyx Corp.). The homology with respect to a human-derived C5-epi (NCBI Accession No.: NP_056369, SEQ ID NO: 3) was 39%, to zebrafish-derived C5-epi (NCBI Accession No.: NP_998015, SEQ ID NO: 4) was 39%, and to nematode-derived C5-epi (NCBI Accession No.: NP_497876, SEQ ID NO: 5) was 30%.
Referential Example 2
Analysis of Hydrophobicity Profile of HG-5Epi
Hydrophobicity profile of the amino acid sequence (SEQ ID NO: 2) of HG-5epi was analyzed. The analysis has suggested that HG-5epi conceivably has a transmembrane region at the N-terminus. Thus, the region consisting of base NOs: 100 to 1,806, the nucleotide sequence defined by SEQ ID NO: 1 excepting the region possibly encoding the N-terminal transmembrane region, was employed in the below-mentioned experiments of HG-5epi expression.
Example 6
Production of Vector for HG-5Epi Expression in Insect Cells (1)
For producing a vector for HG-5epi expression in insect cells, PCR was performed by using pBS/HG-5epi obtained in the above <Example 5> as a template. In PCR, oligonucleotides defined by SEQ ID NOs: 29 and 30 were used as primers. PCR was performed by use of Accuprime Taq DNA Polymerase High Fidelity (product of Invitrogen). PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 20 seconds, and (94° C. for 20 seconds, 58° C. for 20 seconds, 68° C. for 3 minutes)×20 cycles. As a result, a DNA fragment (about 1.7 kbp) was obtained.
This DNA fragment was purified by use of MinElute Gel Extraction Kit (product of Qiagen), through a procedure in accordance with an attached protocol. The thus-purified DNA fragment was limitedly digested with restriction enzymes EcoRI and NotI (products of Takara Bio Inc.) and purified again in a similar manner. An expression vector, pFBIF1 (mentioned below) was also subjected to limited digestion with the same restriction enzymes and purification. Then, the DNA fragment was ligated to pFBIF1 by use of T4 DNA Ligase (product of New England Biolabs), through a procedure in accordance with an attached protocol.
By use of the ligation reaction mixture, E. coli DH5α cells (product of Toyobo) were transformed. The transformant cells were applied onto a plate of a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C., to thereby obtain a single colony. The colony was inoculated to a LB/Amp medium (4 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a vector was obtained from the E. coli pellets by use of QIAprep Spin Miniprep Kit, through a procedure in accordance with an attached protocol. Subsequently, through sequencing reaction by use of BigDye Terminator v3.1 Cycle Sequencing Kit, sequence analysis was carried out by means of Applied Biosystems 3130xl Genetic Analyzer (product of Applied Biosystems). The analysis has revealed that the nucleotide sequence of the thus-ligated DNA fragment is the same as the nucleotide sequence defined by base NOs: 100 to 1,806 of SEQ ID NO: 1. Thus, a vector for HG-5epi expression in insect cells (pFBIF1/HG-5epi) was yielded.
As used herein the “pFBIF1” refers to an insect-cell expression vector which is produced by inserting, into a multi-cloning site of pFastBac1 (product of Invitrogen), a DNA encoding the amino acid sequence (SEQ ID NO: 34) of a polypeptide consisting of the amino acid sequence (SEQ ID NO: 31) of a mouse Igκ chain secretion signal peptide and the amino acid sequence (SEQ ID NO: 32) of a FLAG tag. Specifically, pFBIF1 is a vector produced through the following procedure. Firstly, PCR is performed by use of a vector into which a DNA consisting of the nucleotide sequence defined by SEQ ID NO: 33 is sub-cloned as a template and oligonucleotides defined by SEQ ID NOs: 35 and 36 as primers, to thereby obtain a DNA fragment. The DNA fragment is inserted into a segment of having pFastBac1 having a BamHI end and an EcoRI end, through the same technique as the above method employing restriction enzymes and T4 DNA Ligase.
The DNA consisting of the nucleotide sequence defined by SEQ ID NO: 33 may be prepared by, for example, synthesizing oligonucleotides having the corresponding nucleotide sequence and a nucleotide complementary thereto; phosphorylating the 5′ end of the each oligonucleotides with T4 Polynucleotide Kinase; mixing the oligonucleotides in a solution; heating the mixture at 90 to 100° C. for 1 to 2 minutes; and cooling the mixture to room temperature. Therefore, by sub-cloning the DNA into any vector (e.g., pBS which has been limitedly digested with EcoRV and dephosphorylated with CIP), the product may be used as a template in the aforementioned PCR.
The thus-obtained pFBIF1/HG-5epi is a vector for fusion polypeptide expression, the fusion polypeptide being consisting of a mouse Igκ chain secretion signal, a FLAG tag, a dipeptide linker formed of asparagine and serine, and a polypeptide consisting of the amino acid sequence defined by amino acid NOs: 34 to 601 of SEQ ID NO: 2.
Example 7
Preparation of Bacmid for HG-5Epi Expression (1)
Next, transgenesis was performed between pFBIF1/HG-5epi and a bacmid by use of Bac-to-Bac (registered trademark) Baculovirus expression system (product of Invitrogen), through a procedure in accordance with an attached protocol. Through the transgenesis, a DNA encoding a fusion polypeptide consisting of a mouse Igκ chain secretion signal, a FLAG tag, a dipeptide linker formed of asparagine and serine, and a polypeptide consisting of the amino acid sequence defined by amino acid NOs: 34 to 601 of SEQ ID NO: 2 was inserted into a bacmid.
More specifically, by use of pFBIF1/HG-5epi, E. coli DH10Bac cells (product of Invitrogen) for preparation of a bacmid were transformed. The transformant cells were applied onto a plate of a LB agar medium containing kanamycin, gentamycin, tetracycline, 5-bromoindolyl β-D-galactopyranoside (Bluo-gal), and isopropyl β-D-thiogalactopyranoside (IPTG), and the cells were statically cultured overnight at 37° C., to thereby obtain a single white colony. The colony was inoculated to a LB medium (1.5 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a bacmid was obtained from the E. coli pellets, through a procedure in accordance with a protocol attached to the Bac-to-Bac Baculovirus expression system. Insertion of a DNA of interest in a full-length manner into a bacmid was confirmed through agarose gel electrophoresis, by determining the dimension of a DNA fragment amplified by PCR employing M13 Forward (−40) (SEQ ID NO: 41) and M13 Reverse (SEQ ID NO: 42) as primers.
Example 8
Preparation of HG-5Epi by Use of Insect Cells (1)
The bacmid obtained in the above <Example 7> was incorporated into insect cells Sf21. Specifically, Sf21 cells (8×105 cells) were seeded to Grace's Insect Medium, Unsupplemented (product of Invitrogen) (2 mL) placed in a 35-mm Petri dish, and incubated at 27° C. for 1 hour, to thereby adhere the cells onto the dish. After confirmation of cell adhesion to the dish, lipid-DNA complexes solution (mentioned below) (0.2 mL) was added thereto, and the cells were incubated at 27° C. for 5 hours. Subsequently, the medium was removed from the dish through suction, and then Sf900 III medium (product of Invitrogen) (4 mL) was added thereto, followed by incubation at 27° C. for 72 hours. Then, the cells separated from the plate through pipetting and the culture broth were collected, and the collected matter was centrifuged at 5,000×g for 5 minutes. The supernatant was recovered as a primary virus solution.
As used herein, the “lipid-DNA complexes solution” refers to a solution prepared by gently and sufficiently mixing separately prepared solution A (i.e., a mixture of Grace's Insect Medium, Unsupplemented (100 μL) and bacmid (0.1 μg/μL) (10 μL)) and separately prepared solution B (i.e., a mixture of Grace's Insect Medium, Unsupplemented (100 μL) and Cellfectin (registered trademark) II Reagent (product of Invitrogen) (8 μL)), and allowing the resultant mixture to stand at room temperature for 30 minutes.
The entirety of the above primary virus solution was added to a culture broth of Sf21 cells (5×107 cells) seeded to Sf900 III medium (50 mL) placed in a Spinner flask (capacity: 100 mL), and the cells were cultured under stirring at 27° C. for 72 hours. Then, the culture broth was centrifuged at 5,000×g for 5 minutes, and the supernatant was recovered as a secondary virus solution.
The secondary virus solution (40 mL) was added to a culture broth of Sf21 cells (1×109 cells) seeded to Sf900 III medium (900 mL) placed in a baffle flask (capacity: 3 L), and the cells were cultured under shaking at 27° C. for 72 hours. Then, the culture broth was centrifuged at 10,000×g for 20 minutes, and the supernatant was recovered, to thereby obtain a culture broth containing HG-5epi.
Example 9
Purification of HG-5Epi (1)
To the HG-5epi-containing culture broth (80 mL) obtained in the above <Example 8>, 10% CHAPS (3-[(3-cholamidopropyl)dimethylammonio]propanesulfonate) (1.6 mL) was added, with gentle stirring. The entirety of the resultant solution was applied to Hi Trap Heparin HP column (product of GE Healthcare) (1 mL) equilibrated with 50 mM Tris-HCl (pH: 7.4)/0.1% CHAPS (10 mL), at a flow rate of 1 mL/min. Subsequently, HG-5epi was eluted through passage of 50 mM Tris-HCl (pH: 7.4)/0.1% CHAPS (4 mL) at a flow rate of 0.2 mL/min.
An HG-5epi-eluted fraction was confirmed through western blotting employing M2 monoclonal antibody (product of Sigma Aldrich) serving as an anti-FLAG antibody. Specifically, the elution fraction obtained in the above column purification was subjected to SDS-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions. The proteins separated in the gel were transferred to a PVDF membrane through a semi-dry method. After transferring the proteins, the PVDF membrane was immersed in a 5% skimmed milk-containing TBS-T (20 mM Tris-HCl (pH: 7.4), 500 mM NaCl, 0.2% TritonX-100, 0.05% Tween 20), with shaking at room temperature for 1 hour, to thereby block the membrane. Subsequently, a peroxidase-labeled anti-FLAG antibody (product of Sigma Aldrich) was 2,000-fold diluted with 5% skimmed milk-containing TBS-T, to thereby provide a solution. The PVDF membrane was immersed in the solution, with shaking at room temperature for 1 hour, to thereby perform antibody staining. The PVDF membrane was washed with TBS-T and immersed in SuperSignal (registered trademark) West Dura (product of Thermo Scientific) for 1 minute. Thereafter, a luminescent signal was detected by means of Image Quant LAS4000 (product of GE Healthcare). The luminescent signal intensity (luminance) of Amino-terminal FLAG-BAP Fusion Protein (concentration-known standard sample, product of Sigma Aldrich), which was also subjected to electrophoresis, was also determined. Through comparison of the luminescent signal intensities, the HG-5epi (protein) concentration was calculated as 0.4 μg/μL.
The thus-obtained HG-5epi-eluted fraction was employed as “roughly purified recombinant HG-5epi” in the subsequent experiments.
Example 10
Production of Vector for HG-5Epi Expression in Insect Cells (2)
For producing a vector for HG-5epi expression in insect cells, PCR was performed by using pBS/HG-5epi obtained in the above <Example 5> as a template. In PCR, oligonucleotides defined by SEQ ID NOs: 37 and 38 were used as primers. PCR was performed by use of Accuprime Taq DNA Polymerase High Fidelity. PCR reaction mixture was prepared through a procedure in accordance with an attached protocol. PCR conditions included 94° C. for 20 seconds, and (94° C. for 20 seconds, 62° C. for 20 seconds, 68° C. for 4 minutes)×18 cycles. By use of TOPO (registered trademark) TA Cloning (registered trademark) Kit (product of Invitrogen), and a procedure in accordance with an attached protocol was performed, whereby a vector in which the amplified DNA fragment was inserted into pCR (registered trademark) 2.1-TOPO was obtained.
By use of the vector, E. coli DH5α cells were transformed. The transformant cells were applied onto a plate of a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C., to thereby obtain a single colony. The colony was inoculated to a LB/Amp medium (2 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a vector was obtained from the E. coli pellets by use of QIAprep Spin Miniprep Kit, through a procedure in accordance with an attached protocol. This vector was limitedly digested with restriction enzymes SalI (product of Takara Bio Inc.) and KpnI (product of Takara Bio Inc.), and a DNA fragment (about 1.7 kbp) was purified by use of MinElute Gel Extraction Kit, through a procedure in accordance with an attached protocol. An expression vector, pFBIF2 (mentioned below) was also subjected to limited digestion with the same restriction enzymes and purification. Then, the DNA fragment was ligated to pFBIF2 by use of T4 DNA Ligase, through a procedure in accordance with an attached protocol.
By use of the ligation reaction mixture, E. coli TOP10 cells (product of Invitrogen) were transformed. The transformant cells were applied onto a plate of a LB/Amp agar medium, and the cells were statically cultured overnight at 37° C., to thereby obtain a single colony. The colony was inoculated to a LB/Amp medium (4 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a vector was obtained from the E. coli pellets by use of QIAprep Spin Miniprep Kit, through a procedure in accordance with an attached protocol. Subsequently, through sequencing reaction by use of BigDye Terminator v3.1 Cycle Sequencing Kit, sequence analysis was carried out by means of Applied Biosystems 3130xl Genetic Analyzer. The analysis has revealed that the nucleotide sequence of thus-ligated DNA fragment is the same as the nucleotide sequence defined by base NOs: 100 to 1,806 of SEQ ID NO: 1. Thus, a vector for HG-5epi expression in insect cells (pFBIF2/HG-5epi) was yielded.
As used herein the “pFBIF2” refers to an insect-cell expression vector which is produced by inserting, into a multi-cloning site of pFastBac1, a DNA encoding the amino acid sequence (SEQ ID NO: 34) of a polypeptide consisting of the amino acid sequence (SEQ ID NO: 31) of a mouse Igκ chain secretion signal peptide and the amino acid sequence (SEQ ID NO: 32) of a FLAG tag. Specifically, pFBIF2 is a vector produced through the following procedure. Firstly, PCR is performed by use of a vector into which a DNA consisting of the nucleotide sequence defined by SEQ ID NO: 33 is sub-cloned as a template and oligonucleotides defined by SEQ ID NOs: 39 and 40 as primers, to thereby obtain a DNA fragment. The DNA fragment is inserted into a segment of having pFastBac1 having a EcoRI end and an SalI end, through the same technique as the above method employing restriction enzymes and T4 DNA Ligase.
The thus-obtained pFBIF2/HG-5epi is a vector for fusion polypeptide expression, the fusion polypeptide being consisting of a mouse Igκ chain secretion signal, a FLAG tag, a dipeptide linker formed of valine and aspartic acid, and a polypeptide consisting of the amino acid sequence defined by amino acid NOs: 34 to 601 of SEQ ID NO: 2.
Example 11
Preparation of Bacmid for HG-5Epi Expression (2)
Next, transgenesis was performed between pFBIF2/HG-5epi and a bacmid by use of Bac-to-Bac (registered trademark) Baculovirus expression system (product of Invitrogen), through a procedure in accordance with an attached protocol. Through the transgenesis, a DNA encoding a fusion polypeptide consisting of a mouse Igκ chain secretion signal, a FLAG tag, a dipeptide linker formed of valine and aspartic acid, and a polypeptide consisting of the amino acid sequence defined by amino acid NOs: 34 to 601 of SEQ ID NO: 2 was inserted into a bacmid.
More specifically, by use of pFBIF2/HG-5epi, E. coli DH10Bac cells for preparation of a bacmid were transformed. The transformant cells were applied onto a plate of a LB agar medium containing kanamycin, gentamycin, tetracycline, 5-bromoindolyl β-D-galactopyranoside (Bluo-gal), and isopropyl β-D-thiogalactopyranoside (IPTG), and the cells were statically cultured overnight at 37° C., to thereby obtain a single white colony. The colony was inoculated to a LB medium (1.5 mL), and shake culturing was performed overnight at 37° C., to thereby obtain pellets of E. coli. Thereafter, a bacmid was obtained from the E. coli pellets, through a procedure in accordance with a protocol attached to the Bac-to-Bac Baculovirus expression system. Insertion of a DNA of interest in a full-length manner into a bacmid was confirmed through agarose gel electrophoresis, by determining the dimension of a DNA fragment amplified by PCR employing M13 Forward (-40) (SEQ ID NO: 41) and M13 Reverse (SEQ ID NO: 42) as primers.
Example 12
Preparation of HG-5Epi by Use of Insect Cells (2)
The bacmid obtained in the above <Example 11> was incorporated into insect cells Sf21. Specifically, Sf21 cells (8×105 cells) were seeded to Grace's Insect Medium, Unsupplemented (2 mL) placed in a 35-mm Petri dish, and incubated at 27° C. for 1 hour, to thereby adhere the cells onto the dish. After confirmation of cell adhesion to the dish, lipid-DNA complexes solution (mentioned below) (0.2 mL) was added thereto, and the cells were incubated at 27° C. for 5 hours. Subsequently, the medium was removed from the dish through suction, and then Sf900 III medium (product of Invitrogen) (4 mL) was added thereto, followed by incubation at 27° C. for 72 hours. Then, the cells separated from the plate through pipetting and the culture broth were collected as a primary virus solution.
As used herein, the “lipid-DNA complexes solution” refers to a solution produced by gently and sufficiently mixing separately prepared solution A (i.e., a mixture of Grace's Insect Medium, Unsupplemented (100 μL) and bacmid (0.1 μg/μL) (10 μL)) and separately prepared solution B (i.e., a mixture of Grace's Insect Medium, Unsupplemented (100 μL) and Cellfectin II Reagent (8 μL)), and allowing the resultant mixture to stand at room temperature for 30 minutes.
The entirety of the above primary virus solution was added to a culture broth of Sf21 cells (1×108 cells) seeded to Sf900 III medium (100 mL) placed in a Spinner flask (capacity: 200 mL), and the cells were cultured under stirring at 27° C. for 72 hours. Then, the culture supernatant was recovered as a secondary virus solution.
The entirety of the secondary virus solution was added to a culture broth of Sf21 cells (2×109 cells) seeded to Sf900 III medium (1.8 L) placed in a baffle flask (capacity: 3 L), and the cells were cultured under shaking at 27° C. for 96 hours. Then, the culture broth was centrifuged at 10,000×g for 20 minutes, and the supernatant was recovered, to thereby obtain a culture broth containing HG-5epi.
Example 13
Purification of HG-5Epi (2)
To the HG-5epi-containing culture broth (400 mL) obtained in the above <Example 12>, 10% CHAPS (3-[(3-cholamidopropyl)dimethylammonio]propanesulfonate) (8 mL) was added, with gentle stirring. The entirety of the resultant solution was applied to Hi Trap Heparin HP column (5 mL) equilibrated with distilled water (50 mL) at a flow rate of 2 mL/min. Subsequently, HG-5epi was eluted through passage of 20 mM Tris-HCl (pH: 7.4)/0.1% CHAPS (22 mL) at a flow rate of 1 mL/min. The eluted fractions containing HG-5epi were combined, and the entirety of the combined eluate was applied to ANTI-FLAG (registered trademark) M2 Affinity Gel column (product of Sigma Aldrich) (1 mL) equilibrated with 20 mM Tris-HCl (pH: 7.4)/0.1% CHAPS (10 mL) at a flow rate of 0.2 mL/min. Next, the column was washed with 20 mM Tris-HCl (pH: 7.4)/0.1% CHAPS/0.5M NaCl (10 mL) at a flow rate of 0.2 mL/min, and then 0.4 mg/mL FLAG peptide-containing 20 mM Tris-HCl (pH: 7.4)/0.1% CHAPS/150 mM NaCl (6 mL) was passed through the column at a flow rate of 0.2 mL/min, to thereby elute HG-5epi. The thus-recovered HG-5epi-containing fractions were combined, and the entirety thereof was transferred to Slide-A-Lyzer 7.0K MWCO Dialysis Cassette (product of Thermo Scientific), where the combined eluate was dialyzed against 20 mM Tris-HCl (pH: 7.4)/0.1% CHAPS/150 mM NaCl.
In each purification step, an HG-5epi-eluted fraction was confirmed through western blotting employing M2 monoclonal antibody serving as an anti-FLAG antibody. Specifically, the elution fraction obtained in the above column purification was subjected to SDS-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions. The proteins separated in the gel were transferred to a PVDF membrane through a semi-dry method. After transferring the proteins, the PVDF membrane was immersed in a 5% skimmed milk-containing TBS-T (20 mM Tris-HCl (pH: 7.4), 500 mM NaCl, 0.2% TritonX-100, 0.05% Tween 20), with shaking at room temperature for 1 hour, to thereby block the membrane. Subsequently, a peroxidase-labeled anti-FLAG antibody was 2,000-fold diluted with 5% skimmed milk-containing TBS-T, to thereby provide a solution. The PVDF membrane was immersed in the solution, with shaking at room temperature for 1 hour, to thereby perform antibody staining. The PVDF membrane was washed with TBS-T and immersed in SuperSignal West Dura for 1 minute. Thereafter, a luminescent signal was detected by means of Image Quant LAS4000. The luminescent signal intensity (luminance) of Amino-terminal FLAG-BAP Fusion Protein (concentration-known standard sample), which was also subjected to electrophoresis, was also determined. Through comparison of the luminescent signal intensities, the HG-5epi (protein) concentration was calculated as 0.5 μg/μL.
As shown in FIG. 1, the HG-5epi-eluted fraction obtained through purification the above column purification exhibited only a single band corresponding to about 75 kDa, as compared to a molecular weight standard (Precision plus protein unstained standards; product of Bio-Rad), when it was subjected to SDS-PAGE under reducing conditions and to CBB staining.
The thus-obtained HG-5epi-eluted fraction was employed as “recombinant HG-5epi” in the subsequent experiments.
Referential Example 3
Determination of IdoA Content Through HPLC Post Column Labeling Method
The IdoA content was determined through a HPLC post column labeling method, according to the flow diagram shown in FIG. 2. For facilitating detection by means of a fluorometer, 2-cyanoacetamide was used as a sugar labeling agent (i.e., labeling agent). The columns employed in the analysis included CarboPac PA1 (inner diameter: 4 mm×length: 50 mm) (product of Nippon Dionex K.K.) as a guard column, and CarboPac PA1 (inner diameter: 4 mm×length: 250 mm) (product of Nippon Dionex K.K.) as a separation column, wherein both columns are connected in a linear fashion. The column temperature was maintained at room temperature.
Alliance 2695 (product of Waters) was employed as a HPLC system to feed eluents. Solvent A (distilled water) and solvent B (0.1M sodium acetate) were employed as mobile phases. Elution was performed in a linear gradient manner. Specifically, the solvent B ratio was adjusted to 0% (start to 2 minutes) and increased from 0% to 5% (2 to 5 minutes) and from 5% to 10% (5 to 65 minutes). The flow rate was adjusted to 0.8 mL/min.
600E (product of Waters) was employed as a HPLC pump to feed labeling agents. Solvent C (0.5% 2-cyanoacetamide) and solvent D (0.25M NaOH) were employed as mobile phases. Liquid feeding was performed in an isocratic manner, where a solution formed of solvent C and solvent D mixed online at a ratio of 1:1 was fed at a flow rate of 0.6 mL/min.
The eluent passed through the columns under the aforementioned conditions and the labeling agent were intermingled through a three-way joint and fed to a reaction coil (inner diameter: 0.5 mm×length: 10 m), a cooling coil (inner diameter: 0.25 mm×length: 3 m), and a fluorescence detector, in this order. For labeling the sugars eluted through the columns with 2-cyanoacetamide, the reaction coil was heated at 125° C. by means of Dry Reaction Bath DB-5 (product of Shimamura Tech). For cooling the solution heated by the reaction coil, the cooling coil was employed in a state of being immersed in distilled water at room temperature. 2475 (product of Waters) was employed as a fluorescence detector, with the excitation wavelength and fluorescence wavelength being adjusted to 346 nm and 410 nm.
FIG. 3 shows a chromatogram of NAH or CDSNAc-HEP subjected to N-deacetylation and nitrous acid degradation, followed by the HPLC post column labeling method. N-deacetylation and nitrous acid degradation were performed through methods as described in the below-mentioned <Example 14>, <Example 16>, or <Example 17>. In the case of NAH, the disaccharide obtained through N-deacetylation and nitrous acid degradation is only a disaccharide (GlcA-aMan) formed of GlcA and aMan, whereas in the case of CDSNAc-HEP, two disaccharides; a disaccharide (IdoA-aMan) formed of IdoA and aMan and a disaccharide (GlcA-aMan), are obtained. Thus, through comparison of the two chromatograms, it was found that GlcA-aMan and IdoA-aMan were successfully detected separately.
Also, a standard product of GlcA-aMan and that of IdoA-aMan were analyzed through the HPLC post column labeling method, and the peak area of each disaccharide was determined. Through comparison, the amount of IdoA-aMan by mole per peak area was found to be 1.3-fold that of GlcA-aMan. Thus, the IdoA content can be calculated through the following equation by inputting the peak area of GlcA-aMan and that of IdoA-aMan.

IdoA content (%)=[(peak area of IdoA-aMan)×1.3/{(peak area of GlcA-aMan)+(peak area of IdoA-aMan)×1.3}]×100  [Equation 1]

The above-employed GlcA-aMan standard product was a product obtained in the below-mentioned <Referential Example 4>, and the above-employed IdoA-aMan standard product was a product obtained in the below-mentioned <Referential Example 5>.
Referential Example 4
Preparation of GlcA-aMan Standard Product
NAH (dry powder) (20 mg) was dissolved in a hydrazine reagent (a solution of hydrazine sulfate (40 mg) dissolved in hydrazine monohydrate (1 mL)) (4 mL), and the solution was incubated at 96° C. for 5 hours by means of a heat block. The resultant solution was diluted with distilled water (4 mL), and the entirety of the diluted product was transferred to Slide-A-Lyzer 2.0K MWCO Dialysis Cassette, where it was desalinated through dialysis overnight against distilled water. Thereafter, the solution was lyophilized to form a dry powder thereof. The dry powder was dissolved in 33% acetic acid (3 mL), and the solution was mixed with 5% aqueous sodium nitrite (3 mL), followed by allowing the product to stand for 90 minutes at room temperature. To the product solution, 12.5% aqueous ammonium sulfamate (3 mL) was added, and the product was allowed to stand at room temperature for 30 minutes. Thus, a solution containing GlcA-aMan was yielded.
The solution was concentrated by means of a centrifugal evaporator to 1 mL, and the entirety of the concentrated solution was desalinated through a gel filtration column. The gel filtration column employed was a column (inner diameter: 2 cm×length: 120 cm) filed with Bio-Gel P-4 Gel (product of Bio-Rad). The column temperature was adjusted to 4° C. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.15 mL/min. The eluate was fractionated in 4.3 mL aliquots, and GlcA-aMan-eluted fractions were confirmed through the carbazole-sulfuric acid method (BITTER T, MUIR H. M., Anal. Biochem. 1962 October; 4: 330-4). The GlcA-aMan-eluted fractions were combined and lyophilized, to thereby provide a dry powder thereof.
The dry powder was dissolved in distilled water (0.2 mL). The entirety thereof was divided into two portions, and each portion was purified through CarboPac PA1 (inner diameter: 9 mm×length: 250 mm) (product of Nippon Dionex K.K.). Solvent A (distilled water) and solvent B (0.1M sodium acetate) were employed as mobile phases. Elution was performed in a linear gradient manner. Specifically, the solvent B ratio was adjusted to 0% (start to 5 minutes) and increased from 0% to 5% (5 to 12 minutes) and from 5% to 10% (12 to 162 minutes). The flow rate was adjusted to 1.6 mL/min. The eluate was fractionated in 0.8 mL aliquots, and each fraction was analyzed through the HPLC post column labeling method, to thereby confirm a GlcA-aMan-eluted fraction. The GlcA-aMan-eluted fractions were combined, and the GlcA-aMan concentration by mole was determined through the carbazole-sulfuric acid method.
Thus, a 256 μM GlcA-aMan standard product solution (3.2 mL) was obtained.
Referential Example 5
Preparation of IdoA-aMan Standard Product
CDSNS-HEP (dry powder) (40 mg) was dissolved in distilled water (0.4 mL), and the solution was mixed with a nitrous acid-sulfuric acid solution (3.6 mL) (the solution prepared by adding 0.5M sulfuric acid (2 mL) to ice-cooled 0.5M barium nitrite (2 mL), centrifuging the mixture at 20,000×g for 1 minute, and recovering the supernatant). The resultant solution was allowed to stand at room temperature for 20 minutes, to thereby yield a solution containing IdoA-aMan.
The solution was mixed with 1M sodium carbonate (1.1 mL). The resultant solution was concentrated by means of a centrifugal evaporator to 1 mL, and the entirety of the concentrated solution was desalinated through a gel filtration column. The gel filtration column employed was a column (inner diameter: 2 cm×length: 120 cm) filed with Bio-Gel P-4 Gel. The column temperature was adjusted to 4° C. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.24 mL/min. The eluate was fractionated in 4 mL aliquots, and IdoA-aMan-eluted fractions were confirmed through the carbazole-sulfuric acid method. The IdoA-aMan-eluted fractions were combined and lyophilized, to thereby provide a dry powder thereof.
The dry powder was dissolved in distilled water (0.2 mL). The entirety thereof was divided into three portions, and each portion was purified through CarboPac PA1 (inner diameter: 9 mm×length: 250 mm). Solvent A (distilled water) and solvent B (0.1M sodium acetate) were employed as mobile phases. Elution was performed in a linear gradient manner. Specifically, the solvent B ratio was adjusted to 0% (start to 5 minutes) and increased from 0% to 5% (5 to 12 minutes) and from 5% to 10% (12 to 162 minutes). The flow rate was adjusted to 1.6 mL/min. The eluate was fractionated in 0.8 mL aliquots, and each fraction was analyzed through the HPLC post column labeling method, to thereby confirm an IdoA-aMan-eluted fraction. The IdoA-aMan-eluted fractions were combined, and the IdoA-aMan concentration by mole was determined through the carbazole-sulfuric acid method.
Thus, a 362 μM IdoA-aMan standard product solution (8 mL) was obtained.
Example 14
Measurement of Activity of Roughly Purified HG-5Epi to NAH as a Substrate
The roughly purified recombinant HG-5epi (5 μL (2 μg)) obtained in the above <Example 9> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated for 17 hours in a water bath at 30° C. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM PIPES-NaOH (pH: 7.0), 0.1% CHAPS, and 10 mg/mL NAH. Thereafter, 1.3% potassium acetate-containing ethanol (117 μL) was added to the incubated reaction mixture, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide. The supernatant was removed, and the precipitates were dissolved in distilled water (100 μL). To the solution, 1.3% potassium acetate-containing ethanol (234 μL) was added, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide again. The supernatant was removed, and the precipitates were dried in air. The dried precipitates were dissolved in distilled water (60 μL), and the solution was lyophilized, to thereby provide a freeze-dry powder thereof.
The dry powder was dissolved in a hydrazine reagent (a solution of hydrazine sulfate (40 mg) dissolved in hydrazine monohydrate (1 mL)) (0.12 mL), and the solution was incubated at 96° C. for 5 hours by means of a heat block. The resultant solution was diluted with distilled water (0.2 mL), and the entirety of the diluted product was transferred to Slide-A-Lyzer 2.0K MWCO Dialysis Cassette, where it was desalinated through dialysis overnight against distilled water. Thereafter, the solution was lyophilized to form a dry powder thereof.
The dry powder was dissolved in 33% acetic acid (80 μL), and the solution was mixed with 5% aqueous sodium nitrite (80 μl), followed by allowing the product to stand for 80 minutes at room temperature. To the product solution, 12.5% aqueous ammonium sulfamate (80 μL) was added, and the product was allowed to stand at room temperature for 30 minutes. The solution was dried by means of a centrifugal evaporator, and the dry product was dissolved in distilled water (50 μL). The entirety of the solution was desalinated through a gel filtration column. The gel filtration column employed was two columns of Superdex Peptide 10/300 GL (product of GE Healthcare) connected with each other in line. The column temperature was adjusted to room temperature. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.6 mL/min. An eluted substance was detected by means of a spectrophotometer at an ultraviolet wavelength of 200 nm. A fraction containing a disaccharide (GlcA-aMan or IdoA-aMan) was collected, and lyophilized to provide a dry powder thereof.
Subsequently, each of the fractionated samples was analyzed through a method described in the aforementioned <Referential Example 3>. Specifically, the dry powder was dissolved in distilled water (300 μL), to thereby provide an analytical sample. The sample (50 μL) was then analyzed through the HPLC post column labeling method. FIG. 4 shows the results. As shown in the chromatogram of FIG. 4, a peak attributed to IdoA-aMan was detected, indicating that HG-5epi is an enzyme which can epimerize GlcA residues of NAH to IdoA residues. The ratio in peak area of GlcA-aMan to IdoA-aMan (GlcA-aMan peak area: IdoA-aMan peak area) was 72.7:27.3. Thus, the IdoA content was calculated to 32.8%, according to the aforementioned Equation 1.
Example 15
Measurement of Activity of Roughly Purified HG-5Epi to NSH as a Substrate
The roughly purified recombinant HG-5epi (20 μL (8 μg)) obtained in the above <Example 9> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated for 17 hours in a water bath at 30° C. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM PIPES-NaOH (pH: 7.0), 0.1% CHAPS, and 5 mg/mL NSH. Thereafter, 1.3% potassium acetate-containing ethanol (117 μL) was added to the incubated reaction mixture, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide. The supernatant was removed, and the precipitates were dissolved in distilled water (100 μL). To the solution, 1.3% potassium acetate-containing ethanol (234 μL) was added, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide again. The supernatant was removed, and the precipitates were dried in air, followed by dissolving the dried precipitates in distilled water (10 μL).
The thus-prepared solution was mixed with a nitrous acid-sulfuric acid solution (40 μL) (the solution prepared by adding 0.5M sulfuric acid (0.5 mL) to ice-cooled 0.5M barium nitrite (0.5 mL), centrifuging the mixture at 20,000×g for 1 minute, and recovering the supernatant), and the resultant solution was allowed to stand at room temperature for 15 minutes. Then, the solution was mixed with 1M sodium carbonate (12 μL), and the entirety of the solution was desalinated through a gel filtration column. The gel filtration column employed was two columns of Superdex Peptide 10/300 GL (product of GE Healthcare) connected with each other in line. The column temperature was adjusted to room temperature. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.6 mL/min. An eluted substance was detected by means of a spectrophotometer at an ultraviolet wavelength of 200 nm. A fraction containing a disaccharide (GlcA-aMan or IdoA-aMan) was collected, and lyophilized to provide a dry powder thereof.
Subsequently, each of the fractionated samples was analyzed through a method described in the aforementioned <Referential Example 3>. Specifically, the dry powder was dissolved in distilled water (300 μL), to thereby provide an analytical sample. The sample (50 μL) was then analyzed through the HPLC post column labeling method. FIG. 5 shows the results. As shown in the chromatogram of FIG. 5, no peak attributed to IdoA-aMan was detected, indicating that HG-5epi is an enzyme which cannot substantially epimerize GlcA residues of NSH to IdoA residues.
Example 16
Measurement of Activity of HG-5Epi to NAH as a Substrate
The recombinant HG-5epi (10 μL (5 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated for 12 hours in a water bath at 30° C. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM BisTris-NaOH (pH: 6.0) and 5 mg/mL NAH. Thereafter, 1.3% potassium acetate-containing ethanol (117 μL) was added to the incubated reaction mixture, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide. The supernatant was removed, and the precipitates were dissolved in distilled water (100 μL). To the solution, 1.3% potassium acetate-containing ethanol (234 μL) was added, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide again. The supernatant was removed, and the precipitates were dried in air. The dried precipitates were dissolved in distilled water (60 μL), and the solution was lyophilized, to thereby provide a freeze-dry powder thereof.
The dry powder was dissolved in a hydrazine reagent (a solution of hydrazine sulfate (40 mg) dissolved in hydrazine monohydrate (1 mL)) (0.12 mL), and the solution was incubated at 96° C. for 5 hours by means of a heat block. The resultant solution was diluted with distilled water (0.2 mL), and the entirety of the diluted product was transferred to Slide-A-Lyzer 2.0K MWCO Dialysis Cassette, where it was desalinated through dialysis overnight against distilled water. Thereafter, the solution was lyophilized to form a dry powder thereof.
The dry powder was dissolved in 33% acetic acid (100 μl), and the solution was mixed with 5% aqueous sodium nitrite (100 μL), followed by allowing the product to stand for 80 minutes at room temperature. To the product solution, 12.5% aqueous ammonium sulfamate (100 μL) was added, and the product was allowed to stand at room temperature for 30 minutes. The solution was dried by means of a centrifugal evaporator, and the dry product was dissolved in distilled water (50 μL). The entirety of the solution was desalinated through a gel filtration column. The gel filtration column employed was two columns of Superdex Peptide 10/300 GL (product of GE Healthcare) connected with each other in line. The column temperature was adjusted to room temperature. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.6 mL/min. An eluted substance was detected by means of a spectrophotometer at an ultraviolet wavelength of 200 nm. A fraction containing a disaccharide (GlcA-aMan or IdoA-aMan) was confirmed through the carbazole-sulfuric acid method, and such fractions were collected. The combined fractions were lyophilized to provide a dry powder thereof.
Subsequently, each of the fractionated samples was analyzed through a method described in the aforementioned <Referential Example 3>. Specifically, the dry powder was dissolved in distilled water (250 μL), to thereby provide an analytical sample. The sample (50 μL) was then analyzed through the HPLC post column labeling method. FIG. 6 shows the results. As shown in the chromatogram of FIG. 6, a peak attributed to IdoA-aMan was detected, indicating that HG-5epi is an enzyme which can epimerize GlcA residues of NAH to IdoA residues. The ratio in peak area of GlcA-aMan to IdoA-aMan (GlcA-aMan peak area:IdoA-aMan peak area) was 73.1:26.9. Thus, the IdoA content was calculated to 32.4%, according to the aforementioned Equation 1.
Example 17
Measurement of Activity of HG-5Epi to CDSNAc-HEP as a Substrate
The recombinant HG-5epi (2 to 16 μL (1.0 to 8.0 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 100 μL) thereof was prepared and incubated for 6 hours in a water bath at 30° C. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM BisTris-NaOH (pH: 6.0), 0.1% CHAPS, and 5 mg/mL CDSNAc-HEP. Thereafter, 1.3% potassium acetate-containing ethanol (234 μL) was added to the incubated reaction mixture, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide. The supernatant was removed, and the precipitates were dissolved in distilled water (100 μL). To the solution, 1.3% potassium acetate-containing ethanol (234 μL) was added, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide again. The supernatant was removed, and the precipitates were dried in air. The dried precipitates were dissolved in distilled water (200 μL), and the solution was lyophilized, to thereby provide a freeze-dry powder thereof.
The dry powder was dissolved in a hydrazine reagent (a solution of hydrazine sulfate (40 mg) dissolved in hydrazine monohydrate (1 mL)) (0.3 mL), and the solution was incubated at 96° C. for 7 hours by means of a heat block. The resultant solution was diluted with distilled water (0.2 mL), and the entirety of the diluted product was transferred to Slide-A-Lyzer 2.0K MWCO Dialysis Cassette, where it was desalinated through dialysis overnight against distilled water. Thereafter, the solution was lyophilized to form a dry powder thereof.
The dry powder was dissolved in 33% acetic acid (200 μl), and the solution was mixed with 5% aqueous sodium nitrite (200 μL), followed by allowing the product to stand for 90 minutes at room temperature. To the product solution, 12.5% aqueous ammonium sulfamate (200 μL) was added, and the product was allowed to stand at room temperature for 30 minutes. The solution was concentrated by means of a centrifugal evaporator to 100 μL, and the entirety of the concentrated solution was desalinated through a gel filtration column. The gel filtration column employed was two columns of Superdex Peptide 10/300 GL (product of GE Healthcare) connected with each other in line. The column temperature was adjusted to room temperature. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.6 mL/min. An eluted substance was detected by means of a spectrophotometer at an ultraviolet wavelength of 200 nm. A fraction containing a disaccharide (GlcA-aMan or IdoA-aMan) was collected, and lyophilized to provide a dry powder thereof.
Subsequently, each of the fractionated samples was analyzed through a method described in the aforementioned <Referential Example 3>. Specifically, the dry powder was dissolved in distilled water (300 μL), to thereby provide an analytical sample. The sample (50 μL) was then analyzed through the HPLC post column labeling method. Table 1 shows the results.










TABLE 1







HG-5epi
IdoA content



















0 μL
77.4%



2 μL
59.5%



4 μL
53.0%



8 μL
48.3%



16 μL 
46.3%










As shown in Table 1, the IdoA content was decreased in response to the amount of HG-5epi added, indicating that HG-5epi is an enzyme which can epimerize IdoA residues of CDSNAc-HEP to GlcA residues.
Example 18
Measurement of Activity of HG-5Epi to CDSNS-HEP as a Substrate
The recombinant HG-5epi (5 μL (2.5 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated for 17 hours in a water bath at 30° C. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM PIPES-NaOH (pH: 7.0), 0.1% CHAPS, and 5 mg/mL CDSNS-HEP. Thereafter, 1.3% potassium acetate-containing ethanol (117 μL) was added to the incubated reaction mixture, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide. The supernatant was removed, and the precipitates were dissolved in distilled water (100 μL). To the solution, 1.3% potassium acetate-containing ethanol (234 μL) was added, and the resultant mixture was centrifuged at 20,000×g for 5 minutes, to thereby precipitate the polysaccharide again. The supernatant was removed, and the precipitates were dried in air. The dried precipitates were dissolved in distilled water (10 μL).
The thus-prepared solution was mixed with a nitrous acid-sulfuric acid solution (40 μL) (the solution prepared by adding 0.5M sulfuric acid (0.5 mL) to ice-cooled 0.5M barium nitrite (0.5 mL), centrifuging the mixture at 20,000×g for 1 minute, and recovering the supernatant), and the resultant solution was allowed to stand at room temperature for 15 minutes. Then, the solution was mixed with 1M sodium carbonate (12 μL), and the entirety of the solution was desalinated through a gel filtration column. The gel filtration column employed was two columns of Superdex Peptide 10/300 GL (product of GE Healthcare) connected with each other in line. The column temperature was adjusted to room temperature. The mobile phase was 0.1M ammonium acetate, and the flow rate was adjusted to 0.6 mL/min. An eluted substance was detected by means of a spectrophotometer at an ultraviolet wavelength of 200 nm. Disaccharide (GlcA-aMan or IdoA-aMan)-eluted fractions were confirmed through the carbazole-sulfuric acid method. The disaccharide-eluted fractions were combined and lyophilized, to thereby provide a dry powder thereof.
Subsequently, each of the fractionated samples was analyzed through a method described in the aforementioned <Referential Example 3>. Specifically, the dry powder was dissolved in distilled water (300 μL), to thereby provide an analytical sample. The sample (50 μL) was then analyzed through the HPLC post column labeling method. Table 2 shows the results.










TABLE 2







Reaction time
IdoA content









 0 hr
83.6%



17 hrs
83.6%










As shown in Table 2, no substantial change was observed in IdoA content before and after the reaction, indicating that HG-5epi is an enzyme which cannot substantially epimerize IdoA residues of CDSNS-HEP to GlcA residues and which cannot substantially epimerize GlcA residues of CDSNS-HEP to IdoA residues.
Example 19
Preparation of [5-3H]NAH
HG-5epi activity was determined also with respect to a radioisotope-including substrate. Thus, NAH in which the hydrogen atom of the 5 position of HexA residues is substituted by 3H (tritium) (hereinafter referred to as “[5-3H]NAH”) was prepared through the following procedure.
The roughly purified recombinant HG-5epi (0.2 mL (0.08 mg)) obtained in the above <Example 9> was used. A reaction mixture (total volume: 2.7 mL) thereof was prepared and incubated for 24 hours at 30° C. by means of a heat block. The reaction mixture was prepared by lyophilizing a mixture of 0.5M PIPES-NaOH (pH: 7.0) (0.25 mL), 10% CHAPS (0.025 mL), and 50 mg/mL NAH (1 mL), re-dissolving the lyophilized product in 3H2O (tritium water) (2.5 mL), and mixing the solution with recombinant HG-5epi (0.2 mL). Subsequently, the reaction mixture was incubated at 95° C. for 5 minutes by means of a heat block, to thereby deactivate the enzyme.
Q Sepharose HP column (product of GE Healthcare) was equilibrated with 20 mM PIPES-NaOH (pH: 7.0)/0.1% CHAPS (100 mL). Then, the entirety of the thus-prepared solution was applied to the column (20 mL) at a flow rate of 2 mL/min. Subsequently, the column was washed through passage of 20 mM PIPES-NaOH (pH: 7.0)/0.1% CHAPS/0.1M NaCl (66 mL), and then 20 mM PIPES-NaOH (pH: 7.0)/0.1% CHAPS/0.5M NaCl (34 mL) was caused to pass through the column, to thereby elute [5-3H]NAH. The corresponding fractions were collected.
A [5-3H]NAH-eluded fraction was confirmed by means of a liquid scintillation counter (Tri-Carb 3110TR; product of Perkin-Elmer). The [5-3H]NAH-containing fractions were combined, and the entirety thereof was transferred to Slide-A-Lyzer 2.0K MWCO Dialysis Cassette, where the combined eluate was desalinated through dialysis against distilled water. The thus-obtained solution was lyophilized, and the obtained dry powder was re-dissolved in distilled water (1.6 mL).
The procedure from the above enzymatic reaction to the recovery of [5-3H]NAH was performed twice, and the obtained fractions were combined. Thus, 3.0 mL of a solution of [5-3H]NAH having a radioactivity of 6.3 KBq/mL was obtained.
Example 20
HG-5Epi Activity Measurement Employing Radioisotope (1)
In HG-5epi activity measurement employing a radioisotope, [5-3H]NAH was used as a substrate. Radioactivity of 3H2O generated by epimerization of HexA residues of [5-3H]NAH by HG-5epi activity was measured, to thereby determine HG-5epi activity. The specific procedure is as follows.
Specifically, the recombinant HG-5epi (0.3 to 10 μL (0.15 to 5 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated in a water bath at 30° C. for 4 hours. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM PIPES-NaOH (pH: 7.0), 0.1% CHAPS, and 100-kdpm/mL [5-3H]NAH. After completion of reaction, [5-3H]NAH was removed from the solution. In a specific procedure, the entirety of the solution was applied to a spin column filled with Q Sepharose HP (0.16 mL) equilibrated with distilled water in advance, and the contents were centrifuged at 2,000×g for 20 seconds. Subsequently, the following procedure was repeated twice: distilled water (0.1 mL) was applied to the spin column, and the contents were centrifuged at 2,000×g for 20 seconds. The whole volume of the solution eluted from the spin column was recovered, and the 3H concentration (dpm) of the solution was measured by means of a liquid scintillation counter. Table 3 shows the results.










TABLE 3







HG-5epi
3H (dpm)



















0 μL
45



0.3 μL 
88



1 μL
222



3 μL
624



10 μL 
1,715










As shown in Table 3, the amount of recombinant HG-5epi added (i.e., HG-5epi activity level) was found to positively correlate to the measurements (dpm), indicating that HG-5epi activity can be determined through this method. In addition, a polysaccharide having an IdoA content of interest was found to be obtained through appropriately tuning the amount of recombinant HG-5epi added to the reaction.
Example 21
HG-5Epi Activity Measurement Employing Radioisotope (2)
The recombinant HG-5epi (0.21 to 5 μL (0.110 to 2.630 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated in a water bath at 30° C. for 2 to 48 hours. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM Bis-Tris-HCl (pH: 6.0), and 180-kdpm/mL [5-3H]NAH. Thereafter, 0.1M Tris (0.1 mL) was added to the reaction mixture, to thereby terminate the enzymatic reaction. After completion of reaction, [5-3H]NAH was removed from the solution. In a specific procedure, the entirety of the solution was applied to a spin column filled with Q Sepharose HP (0.16 mL) equilibrated with distilled water in advance, and the contents were centrifuged at 2,000×g for 20 seconds. Subsequently, the following procedure was repeated twice: 0.1M Tris (0.1 mL) was applied to the spin column, and the contents were centrifuged at 2,000×g for 20 seconds. The whole volume of the solution eluted from the spin column was recovered, and the 3H concentration (dpm) of the solution was measured by means of a liquid scintillation counter. Table 4 shows the results.












TABLE 4







Reaction time
HG-5epi
3H (dpm)
(dpm/μg)





















 0 hr

15




 2 hrs
2.630 μL
1,630
614



 5 hrs
1.052 μL
1,652
1,556



12 hrs
0.438 μL
1,498
3,386



26 hrs
0.202 μL
1,409
6,901



48 hrs
0.110 μL
1,287
11,564










Each of the values (dpm/μg) shown in Table 4 was the value calculated by subtracting a blank value from a 3H concentration measurement (dpm) and dividing the obtained value by the amount of HG-5epi added (μg). As shown in Table 4, reaction time was found to positively correlate to the measurement per unit enzyme amount (dpm/μg), indicating that the measurement (dpm) positively correlates to the product of the amount of HG-5epi added (i.e., HG-5epi activity level) and reaction time, in the HG-5epi activity measurement employing [5-3H]NAH. Therefore, reaction time positively correlates to the measurement, whereby HG-5epi activity can be determined by measuring change-over-time in 3H concentration (dpm). In addition, a polysaccharide having an IdoA content of interest was found to be obtained through appropriately tuning the reaction time.
Example 22
Optimum pH of HG-5Epi Activity
In order to investigate the optimum pH of HG-5epi activity, relevant enzymatic reaction was performed in an aqueous solution having a pH of 4.5 to 7.5, to thereby measure HG-5epi activity.
Specifically, the recombinant HG-5epi (5 μL (2.5 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated in a water bath at 30° C. for 2 hours. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM McIlvaine Buffer (pH: 4.5 to 7.5), 0.1% CHAPS, and 180-kdpm/mL [5-3H]NAH. Thereafter, 0.1M Tris (0.1 mL) was added to the reaction mixture, to thereby terminate the enzymatic reaction. After completion of reaction, [5-3H]NAH was removed from the solution. In a specific procedure, the entirety of the solution was applied to a spin column filled with Q Sepharose HP (0.16 mL) equilibrated with distilled water in advance, and the contents were centrifuged at 2,000×g for 20 seconds. Subsequently, the following procedure was repeated twice: 0.1M Tris (0.1 mL) was applied to the spin column, and the contents were centrifuged at 2,000×g for 20 seconds. The whole volume of the solution eluted from the spin column was recovered, and the 3H concentration (dpm) of the solution was measured by means of a liquid scintillation counter. Table 5 shows the results. Notably, each of the measurements (dpm) shown in Table 5 was the value calculated by subtracting a blank value at a pH of 7.0 (i.e., the measurement of a sample employing an equiamount of water instead of recombinant HG-5epi) from the actual measurement.










TABLE 5







pH
3H (dpm)



















4.5
2



5.0
215



5.5
860



6.0
800



6.5
444



7.0
197



7.5
57










As shown in Table 5, HG-5epi activity reached the highest at a pH of 5.5. Also, HG-5epi showed an almost equivalent activity at a pH of 6.0. Therefore, HG-5epi was found to be an enzyme having an optimum pH of 5.5 to 6.0.
Example 23
Effect of Salt on HG-5Epi Activity
In order to assess the effect of a salt on HG-5epi activity, HG-5epi activity was measured in the presence of sodium chloride (NaCl), magnesium chloride (MgCl2), calcium chloride (CaCl2), or manganese chloride (MnCl2), added to adjust the final concentration to be 1 to 64 mM.
Specifically, the recombinant HG-5epi (2 μL, (1 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated in a water bath at 30° C. for 5 hours. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM Bis-Tris-HCl Buffer (pH: 6.0) and 180-kdpm/mL [5-3H]NAH, in addition to adding a salt to be final concentration of interest. Thereafter, 0.1M Tris (0.1 mL) was added to the reaction mixture, to thereby terminate the enzymatic reaction. After completion of reaction, [5-3H]NAH was removed from the solution. In a specific procedure, the entirety of the solution was applied to a spin column filled with Q Sepharose HP (0.16 mL) equilibrated with distilled water in advance, and the contents were centrifuged at 2,000×g for 20 seconds. Subsequently, the following procedure was repeated twice: 0.1M Tris (0.1 mL) was applied to the spin column, and the contents were centrifuged at 2,000×g for 20 seconds. The whole volume of the solution eluted from the spin column was recovered, and the 3H concentration (dpm) of the solution was measured by means of a liquid scintillation counter. Table 6 shows the results.










TABLE 6









3H (dpm)












Concn.
NaCl
MgCl2
CaCl2
MnCl2














0 mM
1,932
1,932
1,932
1,932


1 mM
1,927
1,907
1,932
1,921


4 mM
1,901
1,876
1,936
1,937


16 mM 
1,809
1,715
1,597
1,584


64 mM 
1,337
800
73
364









As shown in Table 6, HG-5epi activity was found to be inhibited in response to NaCl concentration, MgCl2 concentration, CaCl2 concentration, or MnCl2 concentration. Particularly when 64 mM CaCl2 was present, the measurement was 3×(blank value (30 dpm)) or lower, indicating that HG-5epi activity is substantially lost in the presence of 64 mM CaCl2.
Example 24
Effect of Surfactant on HG-5Epi Activity
For assessing the effect of a surfactant on HG-5epi activity, HG-5epi activity was measured in the presence of 3-[(3-cholamidopropyl)dimetylammonio]-1-propanesulfonic acid (CHAPS), sodium deoxycholate, n-octyl-β-D-glucoside, or Triton X-100, added to adjust the final concentration to be 0.01 to 0.3% (w/v).
Specifically, the recombinant HG-5epi (2 μL, (1 μg)) obtained in the above <Example 13> was used. A reaction mixture (total volume: 50 μL) thereof was prepared and incubated in a water bath at 30° C. for 5 hours. The reaction mixture was prepared so that the final compositional proportions (based on concentration) thereof were adjusted to 50 mM Bis-Tris-HCl Buffer (pH: 6.0), and 180-kdpm/mL [5-3H]NAH, in addition to adding a surfactant to be final concentration of interest. Thereafter, 0.1M Tris (0.1 mL) was added to the reaction mixture, to thereby terminate the enzymatic reaction. After completion of reaction, [5-3H]NAH was removed from the solution. In a specific procedure, the entirety of the solution was applied to a spin column filled with Q Sepharose HP (0.16 mL) equilibrated with distilled water in advance, and the contents were centrifuged at 2,000×g for 20 seconds. Subsequently, the following procedure was repeated twice: 0.1M Tris (0.1 mL) was applied to the spin column, and the contents were centrifuged at 2,000×g for 20 seconds. The whole volume of the solution eluted from the spin column was recovered, and the 3H concentration (dpm) of the solution was measured by means of a liquid scintillation counter. Table 7 shows the results.









TABLE 7









3H (dpm)











Concn.
CHAPS
Na deoxycholate
Octylglucoside
Triton X-100














0.00%
1,774
1,774
1,774
1,774


0.01%
1,771
1,477
1,807
1,795


0.03%
1,784
593
1,815
1,809


0.1%
1,722
4
1,682
1,847


0.3%
1,490
3
1,408
1,891









As shown in Table 7, HG-5epi activity was found to be inhibited in response to CHAPS concentration, sodium deoxycholate concentration, or n-octyl-β-D-glucoside concentration. Particularly, HG-5epi activity was significantly inhibited by sodium deoxycholate. In the presence of sodium deoxycholate at a final concentration of 0.1% or higher, HG-5epi activity was absolutely inhibited.
INDUSTRIAL APPLICABILITY
According to the present invention, an enzyme or a polypeptide which has HG-5epi activity can be provided, and thereby a polysaccharide in which HexA residues has been epimerized can be produced. Such a HexA residues-epimerized polysaccharide is expected to be useful as a new material.
DESCRIPTION OF SEQUENCE LIST
SEQ ID NO: 1: nucleotide sequence of cDNA of Achatina fulica HG-5epi
SEQ ID NO: 2: amino acid sequence of Achatina fulica HG-5epi
SEQ ID NO: 3: amino acid sequence of human C5-epi
SEQ ID NO: 4: amino acid sequence of zebrafish C5-epi
SEQ ID NO: 5: amino acid sequence of nematode C5-epi
SEQ ID NO: 6: primer
SEQ ID NOs: 7, 8: EcoRI adaptor
SEQ ID NOs: 9 to 15: primer
SEQ ID NO: 16: partial sequence of cDNA of Achatina fulica HG-5epi
SEQ ID NOs: 17 to 22: primer
SEQ ID NO: 23: partial sequence of cDNA of Achatina fulica HG-5epi
SEQ ID NOs: 24 to 27: primer
SEQ ID NO: 28: partial sequence of cDNA of Achatina fulica HG-5epi
SEQ ID NOs: 29, 30: primer
SEQ ID NO: 31: amino acid sequence of mouse Igκ chain secretion signal peptide
SEQ ID NO: 32: amino acid sequence of FLAG tag
SEQ ID NO: 33: nucleotide sequence of recombinant DNA encoding mouse Igκ chain secretion signal peptide and FLAG tag
SEQ ID NO: 34: amino acid sequence of polypeptide consisting of mouse Igκ chain secretion signal peptide and FLAG tag
SEQ ID NOs: 35 to 42: primer

## Claims

1. A polypeptide selected from the group consisting of the following (A) to (D), provided that said polypeptide is not a polypeptide consisting of the amino acid sequence of residues 1 to 601 of SEQ ID NO: 2 and does not contain the amino acid sequence of residues 1 to 33 of SEQ ID NO: 2,
wherein said polypeptide has an activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues:
(A) a polypeptide comprising the amino acid sequence of residues 34 to 601 of SEQ ID NO: 2;
(B) a polypeptide comprising the amino acid sequence of residues 1 to 601 of SEQ ID NO: 2 but in which 1 to 60 amino acid residues are substituted, deleted, inserted, and/or added;
(C) a polypeptide comprising the amino acid sequence of residues 34 to 601 of SEQ ID NO: 2 but in which 1 to 56 amino acid residues are substituted, deleted, inserted, and/or added; and
(D) a fusion polypeptide, wherein said fusion polypeptide comprises the polypeptide of (A), (B) or (C) fused to a peptide tag.

2. The polypeptide according to claim 1, wherein said polypeptide contains at least one amino acid substitution or insertion with respect to the amino acid sequence of residues 1 to 601 of SEQ ID NO: 2.

3. A polynucleotide molecule encoding a polypeptide according to claim 1.

4. A vector comprising the nucleic acid according to claim 3.

5. A host cell harboring a nucleic acid and/or a vector comprising the nucleic acid, wherein the nucleic acid is the nucleic acid according to claim 3.

6. A method for producing a polypeptide, the method comprising the following steps (A) and (B):
(A) a step of expressing a polypeptide having an activity of epimerizing glucuronic acid residues of N-acetyl heparosan to iduronic acid residues by culturing the host cell according to claim 5; and
(B) a step of recovering the polypeptide expressed in step (A).

7. A method for producing a polysaccharide in which hexuronic acid residues have been epimerized, said method comprising a step of bringing into contact a polypeptide according to claim 1 with a polysaccharide including a disaccharide formed of an N-acetyl glucosamine residue and a hexuronic acid residue.

8. The method according to claim 7, wherein said polysaccharide is N-acetyl heparosan.