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                    U.S. DEPARTMENT OF AGRICULTURE
 Crop Science Research Laboratory: Mississippi State, MS
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Johnie Norton Jenkins
                        Crop Science Research Laboratory

                        




                        
                        Location Coordinator and Research Leader
                        Phone: (662) 320-7524
                         ext.  662
                        
                        Fax: (Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsEnhancing Agronomic Traits, Fiber Quality, and Resistance to Environmental Stress, Nematodes, and Fungal Diseases in Cotton
                                                    In-House Appropriated
                                                                    (D)Accession Number: 444591Dynamic, Data-Driven, Sustainable, and Resilient Crop Production Systems for the U.S.
                                                    In-House Appropriated
                                                                    (D)Accession Number: 445492Design and Building a Cover Crop Planter
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 442974Dynamic, Data-Driven, Sustainable, and Resilient Crop Production Systems for the U.S.
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 443825Dynamic, Data-Driven, Sustainable, and Resilient Crop Production Systems for the U.S.
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 443866**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Multi-Omics Analysis of Pigmentation Related to Proanthocyanidin Biosynthesis in Brown Cotton (Gossypium hirsutum L.)
                                                        

- (Peer Reviewed Journal)Hinchliffe, D.J., Naoumkina, M., Thyssen, G.N., Nam, S., Chang, S., Mccarty, J.C., Jenkins, J.N. 2024. Multi-Omics Analysis of Pigmentation Related to Proanthocyanidin Biosynthesis in Brown Cotton (Gossypium hirsutum L.). Frontiers in Plant Science. 15: 1372232. https://doi.org/10.3389/fpls.2024.1372232.Exploring 65 years of progress in cotton nutrient uptake, efficiency and partitioning in the USA
                                                        

- (Peer Reviewed Journal)Singh, J., Gamble, A.V., Brown, S., Campbell, B.T., Jenkins, J.N., Koebernick, J., Bartley Iii, P.C., Sanz-Saez, A. 2023. Exploring 65 years of progress in cotton nutrient uptake, efficiency and partitioning in the USA. Field Crops Research. 305(109189). https://doi.org/10.1016/j.fcr.2023.109189.Breeding of high seed oil oleate levels into Upland cotton from wild Gossypium barbadense L. germplasm.
                                                        

- (Peer Reviewed Journal)Dowd, M.K., Shockey, J., Mccarty Jr, J.C., Jenkins, J.N. 2023. Breeding of high seed oil oleate levels into Upland cotton from wild Gossypium barbadense L. germplasm. Crop Science. 63(6):3393-3401. https://doi.org/10.1002/csc2.21119.Soil health assessment for different tillage and cropping systems to determine sustainable mangement practices in a humid region
                                                        

- (Peer Reviewed Journal)Chang, T., Feng, G.G., Adeli, A., Brooks, J.P., Jenkins, J.N. 2023. Soil health assessment for different tillage and cropping systems to determine sustainable mangement practices in a humid region. Soil & Tillage Research. 233:1-14. https://doi.org/10.1016/j.still.2023.105796.Interrelationships between cotton fiber quality traits and fluid handling and moisture management properties of nonwoven textiles
                                                        

- (Peer Reviewed Journal)Hron, R.J., Hinchliffe, D.J., Thyssen, G.N., Condon, B.D., Zeng, L., Santiago Cintron, M., Jenkins, J.N., Mccarty Jr, J.C., Sui, R. 2023. Interrelationships between cotton fiber quality traits and fluid handling and moisture management properties of nonwoven textiles. Textile Research Journal. https://doi.org/10.1177/00405175221132011.Interrelationships between cotton fiber quality traits and tensile properties of hydroentangled nonwoven fabrics
                                                        

- (Peer Reviewed Journal)Hinchliffe, D.J., Thyssen, G.N., Condon, B.D., Zeng, L., Hron, R.J., Madison, C.A., Jenkins, J.N., Mccarty Jr, J.C., Delhom, C.D., Sui, R. 2023. Interrelationships between cotton fiber quality traits and tensile properties of hydroentangled nonwoven fabrics. Journal of Industrial Textiles. https://doi.org/10.1177/15280837231171312.Effects of cover crops and soil amendments on soil CO2 fluxes in Mississippi corn cropping system on upland soil
                                                        

- (Peer Reviewed Journal)Hu, J., Miles, D.M., Adeli, A., Brooks, J.P., Podrebarac, F.A., Smith, R.K., Lei, F., Li, X., Jenkins, J.N., Moorehead II, R.J. 2023. Effects of cover crops and soil amendments on soil CO2 fluxes in Mississippi corn cropping system on upland soil. Environments. 10(2): 19. https://doi.org/10.3390/environments10020019.Chromosome substitution lines with improved essential mineral nutrients and fiber quality traits in Upland cotton
                                                        

- (Peer Reviewed Journal)Saha, S., Tewolde, H., Jenkins, J.N., Mccarty Jr, J.C., Stelly, D.M. 2023. Chromosome substitution lines with improved essential mineral nutrients and fiber quality traits in Upland cotton. Genetic Resources and Crop Evolution. https://doi.org/10.1007/s10722-023-01628-2.Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population
                                                        

- (Peer Reviewed Journal)Thyssen, G.N., Condon, B.D., Hinchliffe, D.J., Zeng, L., Naoumkina, M., Jenkins, J.N., Mccarty,J.C., Sui, R., Madison, C., Li, P., Fang, D.D. Flame resistant cotton lines generated by synergistic epistasis in a MAGIC population. PLOS ONE. 18:e0278696.2023. https://doi.org/10.1371/journal.pone.0278696.Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population
                                                        

- (Peer Reviewed Journal)Fang, D.D., Thyssen, G.N., Wang, M.C., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2022. Genomic confirmation of Gossypium barbadense introgression into G. hirsutum and a subsequent MAGIC population. Molecular Genetics and Genomics. 298:143-152. https://doi.org/10.1007/s00438-022-01974-3.Virulence of two isolates of Meloidogyne enterolobii (guava root-knot nematode) from North Carolina on cotton lines resistant to southern root-knot nematode (M. incognita) and reniform nematode (Rotylenchulus reniformis)
                                                        

- (Peer Reviewed Journal)Gaudin, A.G., Wubben, M., Mccarty Jr, J.C., Jenkins, J.N. 2023. Virulence of two isolates of Meloidogyne enterolobii (guava root-knot nematode) from North Carolina on cotton lines resistant to southern root-knot nematode (M. incognita) and reniform nematode (Rotylenchulus reniformis). Journal of Nematology. 55:0021. https://doi.org/10.2478/jofnem-2023-0021.Absorption and translocation of [14C]2,4-dichlorophenoxyacetic acid in herbicide-tolerant chromosome substitution lines of Gossypium hirsutum L
                                                        

- (Peer Reviewed Journal)Perez, L.M., Yue, Z., Saha, S., Dean, J.F., Jenkins, J.N., Stelly, D.M., Tseng, T.P. 2022. Absorption and translocation of [14C]2,4-dichlorophenoxyacetic acid in herbicide-tolerant chromosome substitution lines of Gossypium hirsutum L. Frontiers in Agronomy. https://org.doi/doi: 10.3389/fagro.2022.936119.Fertilizer value of poultry litter applied by subsurface band vs. surface broadcast in corn production
                                                        

- (Peer Reviewed Journal)Tewolde, H., Way, T.R., Buehring, N., Jenkins, J.N. 2022. Fertilizer value of poultry litter applied by subsurface band vs. surface broadcast in corn production. Journal of Plant Nutrition. 46(9):2044-2059. https://doi.org/10.1080/01904167.2022.2118133.Combined effects of organic amendments and fertilization on cotton growth and yield
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Miles, D.M., Todd, M., Feng, G.G., Jenkins, J.N. 2022. Combined effects of organic amendments and fertilization on cotton growth and yield. Agronomy Journal. 2022;1-12. https://DOI.org/10.1002/agj2.21178.A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance
                                                        

- (Peer Reviewed Journal)Zhu, Y., Thyssen, G.N., Abdelraheem, A., Teng, Z., Fang, D.D., Jenkins, J.N., Mccarty Jr, J.C., Wedegaertner, T., Hake, K., Zhang, J. 2022. A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance. Theoretical and Applied Genetics. 135:2297-2312. https://doi.org/10.1007/s00122-022-04113-z.Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton
                                                        

- (Peer Reviewed Journal)Wang, M., Qi, Z., Thyssen, G.N., Naoumkina, M.A., Jenkins, J.N., McCarty, J.C., Xiao, Y., Li, J., Zhang, X., Fang, D.D. 2022. Genomic interrogation of a MAGIC population highlights genetic factors controlling fiber quality traits in cotton. Communications Biology. 5:60. https://doi.org/10.1038/s42003-022-03022-7.Assessing the weed-suppressing potential of cotton Chromosome Substitution Lines using the Stair-Step Assay
                                                        

- (Peer Reviewed Journal)Fuller, M.G., Saha, S., Stelly, D.M., Jenkins, J.N., Tseng, T.P. 2021. Assessing the weed-suppressing potential of cotton Chromosome Substitution Lines using the Stair-Step Assay. Plants. 10:2450. https://doi.org/10.3390/plants10112450.Registration of seven recombinant inbred lines of Upland Cotton with improved fiber length or strength
                                                        

- (Peer Reviewed Journal)Jenkins, J.N., Mccarty Jr, J.C., Hayes, R.W., Wubben, M., Fang, D.D., Thyssen, G.N., Zeng, L., Campbell, B.T., Jones, D.C. 2021. Registration of seven recombinant inbred lines of Upland cotton with improved fiber length or strength. Journal of Plant Registrations. 16:94-99. https://doi.org/10.1002/plr2.20193.Integration of pelleted biosolids with cover crops for improving soil properties
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Feng, G.G., Mozaffari, M., Jenkins, J.N. 2021. Integration of pelleted biosolids with cover crops for improving soil properties. Soil Science. 44(18); 2677-2690. https://doi.org/10.1002/saj2.20341.Effects of interspecific chromosome substitution in upland cotton on cottonseed macronutrients
                                                        

- (Peer Reviewed Journal)Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2021. Effects of interspecific chromosome substitution in upland cotton on cottonseed macronutrients. Plants. 10(6):1-13. https://doi.org/10.3390/plants10061158.Yield and nutrient removal of cotton-corn-soybean rotation systems fertilized with poultry litter
                                                        

- (Peer Reviewed Journal)Tewolde, H., Buehring, N., Way, T.R., Feng, G.G., He, Z., Sistani, K.R., Jenkins, J.N. 2021. Yield and nutrient removal of cotton-corn-soybean rotation systems fertilized with poultry litter. Agronomy Journal. 113:5483-5498. https://doi.10.1002/agj2.20857.History of USDA-ARS Cotton Host Resistance and Breeding Research at Mississippi State, MS

- (Peer Reviewed Journal)Mccarty Jr, J.C., Jenkins, J.N., Saha, S., Wubben, M. 2021. History of USDA-ARS Cotton Host Resistance and Breeding Research at Mississippi State, MS. Journal of Cotton Science. 25:101-157. https://www.cotton.org/journal/2021-25/2/.Effect of chromosome substitution from alien tetraploid cotton species in Upland cotton on (+) and (-) gossypol enantiomer levels in cottonseed

- (Peer Reviewed Journal)Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2021. Effect of chromosome substitution from alien tetraploid cotton species in Upland cotton on (+) and (-) gossypol enantiomer levels in cottonseed. Journal of Cotton Science. 25:7-20.High-temperature and drought-resilience traits among interspecific chromosome substitution lines for genetic improvement of Upland cotton
                                                        

- (Peer Reviewed Journal)Reddy, K.R., Bheemanahalli, R., Saha, S., Lokhande, S.B., Read, J.J., Jenkins, J.N., Raska, D.A., De Santiago, L., Hulse-Kemp, A.M., Vaughn, R.N., Stelly, D.M. 2020. High-temperature and drought-resilience traits among interspecific chromosome substitution lines for genetic improvement of Upland cotton. Plants. 9:1747. https://doi.org/10.3390/plants9121747.Pelleted biosolid and cover crop effects on major southern row crops
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Read, J.J., Barksdale, D.N., Jenkins, J.N. 2021. Pelleted biosolid and cover crop effects on major southern row crops. Journal of Plant Nutrition. 44(18); 2677-2690. https://doi.org/10.1080/01904167.2021.1927090.GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents
                                                        

- (Peer Reviewed Journal)Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Wedegaertner, T., Zhang, J. 2020. GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of 11 Upland cotton (Gossypium hirsutum) parents. Molecular Genetics and Genomics. 296(1):119-129. https://doi.org/10.1007/s00438-020-01733-2.GWAS reveals consistent QTL for drought and salt tolerance in a MAGIC population of 550 lines derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents

- (Peer Reviewed Journal)Effects of interspecific chromosome substitution in upland cotton on cottonseed micronutrients
                                                        

- (Peer Reviewed Journal)Bellaloui, N., Saha, S., Tonos, J.L., Scheffler, J.A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M. 2020. Effects of interspecific chromosome substitution in upland cotton on cottonseed micronutrients. Plants. 9(9):1-17. https://doi.org/10.3390/plants9091081.Assessing genetic variation for Fusarium wilt race 4 resistance in tetraploid cotton by screening over three thousand germplasm lines under greenhouse or controlled conditions
                                                        

- (Peer Reviewed Journal)Zhang, J., Abdelraheem, A., Zhu, Y., Wheeler, T.A., Dever, J., Frelichowski, J.E., Love, J., Ulloa, M., Jenkins, J.N., McCarty Jr, J.C., Nichols, R., Wedegaertner, T. 2020. Assessing genetic variation for Fusarium wilt race 4 resistance in tetraploid cotton by screening over three thousand germplasm lines under greenhouse or controlled conditions. Euphytica. 216:108. https://doi.org/10.1007/s10681-020-02646-2.Effect of chromosome substitution from Gossypium barbadense L,G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonsend protein and oil content
                                                        

- (Peer Reviewed Journal)Saha, S., Bellaloui, N., Jenkins, J.N., Mccarty Jr, J.C., Stelly, D.M. 2020. Effect of chromosome substitution from Gossypium barbadense L,G. tomentosum Nutt. Ex Seem and G. mustelinum Watt into G. hirsutum L. on cottonsend protein and oil content. Euphytica. 216:118. https://doi.org/10.1007/s10681-020-02644-4.Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population
                                                        

- (Peer Reviewed Journal)Kim, H.J., Delhom, C.D., Fang, D.D., Zeng, L., Jenkins, J.N., Mccarty Jr, J.C., Jones, D.C. 2020. Application of the cottonscope for determining fiber maturity and fineness of an upland cotton MAGIC population. Crop Science. 60(5):2266–2279. https://doi.org/10.1002/csc2.20197.Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles
                                                        

- (Peer Reviewed Journal)He, Z., Zhang, H., Fang, D.D., Zeng, L., Jenkins, J.N., McCarty, J.C. 2020. Effects of inter-species chromosome substitution on cottonseed mineral and protein nutrition profiles. Agronomy Journal. 112:3963-3974. https://doi.org/10.1002/agj2.20264.Differential effects of cotton root-knot nematode resistance QTL on RKN development and fecundity
                                                        

- (Peer Reviewed Journal)Wubben, M., Gaudin, A.G., Mccarty Jr, J.C., Jenkins, J.N. 2020. Differential effects of cotton root-knot nematode resistance QTL on RKN development and fecundity. Phytopathology. 110:927-932. https://doi.org/10.1094/PHYTO-09-19-0370-R.Management strategies on an Upland soil for improving soil properties
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Read, J.J., Feng, G.G., Miles, D.M., Shankle, M.W., Barksdale, D.N., Jenkins, J.N. 2020. Management strategies on an Upland soil for improving soil properties. Soil Science. 51(3); 413-429. HTTPS://DOI.ORG/10.1080/00103624.2019.1709490.Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents
                                                        

- (Peer Reviewed Journal)Zhang, J., Abdelraheem, A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty Jr, J.C., Wedegaertner, T. 2019. Evaluation and genome-wide association study of Verticillium wilt resistance in a MAGIC population derived from intermating of eleven Upland cotton (Gossypium hirsutum) parents. Euphytica. 216:9. https://doi.org/10.1007/s10681-019-2547-6.Registration of four upland cotton germplasm lines with elevated levels of seed oil oleic acid
                                                        

- (Peer Reviewed Journal)Dowd, M.K., McCarty Jr, J.C., Shockey, J., Jenkins, J.N. 2020. Registration of four upland cotton germplasm lines with elevated levels of seed oil oleic acid. Journal of Plant Registrations. 14(1):64-71. https://doi.org/10.1002/plr2.20017.Registration of RMBHMTUP-C4 a Random Mated Population with alleles from Four Gossypium Species introgressed into Upland Cotton Germplasm

- (Germplasm Registration)Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton
                                                        

- (Peer Reviewed Journal)Islam, M.S., Fang, D.D., Jenkins, J.N., Guo, J., Mccarty Jr, J.C., Jones, D.C. 2019. Evaluation of genomic selection methods for predicting fiber quality traits in upland cotton. Molecular Genetics and Genomics. 295:67-69. https://doi.org/10.1007/s00438-019-01599-z.Corn and soybean grain yield responses to soil amendments and cover crop in upland soils
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Read, J.J., Feng, G.G., Miles, D.M., Shankle, M.W., Jenkins, J.N. 2019. Corn and soybean grain yield responses to soil amendments and cover crop in upland soils. Journal of Plant Nutrition. 42(19):2484-2497. https://doi.org/10.1080/01904167.2019.1655046.Revealing GE interactions from trial data without replications
                                                        

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr, J.C. 2019. Revealing GE interactions from trial data without replications. Open Journal of Statistics. 9:407-419. https://doi.org/10.4236/ojs.2019.93027.Simulating weekly available streamflow and pond water resources potential in Mississippi Delta
                                                        

- (Peer Reviewed Journal)Gao, F., Feng, G.G., Ouyang, Y., Jenkins, J.N., Lui, C. 2019. Simulating weekly available streamflow and pond water resources potential in Mississippi Delta. Water. 11:1271. https://doi.org/10.3390/w11061271.Long-term effect of cover crop on rainwater balance components and use
efficiency in the no-tilled and rainfed corn and soybean rotation system
                                                        

- (Peer Reviewed Journal)Yang, W., Feng, G.G., Adeli, A., Kersebaum, K.C., Jenkins, J.N., Li, P. 2019. Long-term effect of cover crop on rainwater balance components and use efficiency in the no-tilled and rainfed corn and soybean rotation system. Agricultural Water Management. 219:27-39. https://doi.org/10.1016/j.agwat.2019.03.022.Poultry litter and cover crop integration into no-till cotton on upland soil
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Read, J.J., Shankle, M.W., Feng, G.G., Jenkins, J.N. 2019. Poultry litter and cover crop integration into no-till cotton on upland soil. Agronomy Journal. 111:2097-2107. https://doi.org/10.2134/agronj2018.05.0328.A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton
                                                        

- (Peer Reviewed Journal)Wubben, M., Thyssen, G.N., Callahan, F.E., Fang, D.D., Deng, D.D., Mccarty Jr, J.C., Li, P., Islam, M.S., Jenkins, J.N. 2019. A novel variant of Gh_D02G0276 is required for Root-Knot nematode resistance on chromosome 14 in Upland Cotton. Theoretical and Applied Genetics. 2019)132:1425–1434. https://doi.org/10.1007/s00122-019-03289-1.Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population
                                                        

- (Peer Reviewed Journal)Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Jenkins, J.N., McCarty, J.C., Florane, C.B. 2019. Genetic and transcriptomic dissection of the fiber length trait from a cotton (Gossypium hirsutum L.) MAGIC population. BMC Genomics. 20:112. https://doi.org/10.1186/s12864-019-5427-5.Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.)
                                                        

- (Peer Reviewed Journal)Thyssen, G.N., Jenkins, J.N., McCarty, J.C., Zeng, L., Campbell, B.T., Delhom, C.D., Islam, M.S., Li, P., Jones, D.C., Condon, B.D., Fang, D.D. 2018. Whole genome sequencing of a MAGIC population identified genomic loci and candidate genes for major fiber quality traits in upland cotton (Gossypium hirsutum L.). Journal of Theoretical and Applied Genetics. 132:989-999. https://doi.org/10.1007/s00122-018-3254-8.Post-reclamation age effects on soil physical properties and microbial activity under forest and pasture ecosystems
                                                        

- (Peer Reviewed Journal)Adeli, A., Brooks, J.P., Read, J.J., McGrew, R., Jenkins, J.N. 2018. Post-reclamation age effects on soil physical properties and microbial activity under forest and pasture ecosystems. Land Degradation and Development. 50(1):20-34. https://doi.org/10.1080/00103624.2018.1546868.Morph-physiological responses of cotton interspecific chromosome substitution lines to low-temperature and drough stresses
                                                        

- (Peer Reviewed Journal)Awasthi, A., Reddy, K.R., Saha, S., Jenkins, J.N., Stelly, D.M. 2018. Morph-physiological responses of cotton interspecific chromosome substitution lines to low-temperature and drough stresses. Euphytica. 214:218. https://doi.org/10.1007/s10681-018-2300-6.Assessment of surface water quality in the Big Sunflower River Watershed of Mississippi Delta using nonparametic analysis
                                                        

- (Peer Reviewed Journal)Ouyang, Y., Feng, G.G., Parajuli, P., Leininger, T., Wan, Y., Jenkins, J.N. 2018. Assessment of surface water quality in the Big Sunflower River Watershed of Mississippi Delta using nonparametic analysis. Water, Air, and Soil Pollution. 229. Article 373. https://doi.org/10.1007/s11270-018-4022-8.Evaluation of a multi-parent advanced generation inter-cross (MAGIC) introgressed line population for Verticillium wilt resistance in Upland cotton
                                                        

- (Peer Reviewed Journal)Martinez, G.K., Abdelraheem, A., Darapuneni, M., Jenkins, J.N., McCarty Jr, J.C., Zhang, J. 2019. Evaluation of a multi-parent advanced generation inter-cross (MAGIC) introgressed line population for Verticillium wilt resistance in Upland cotton. Euphytica. 214:197. https://doi/10.1007/s10681-018-2278-0.The effect of cotton growth stage on response to sub-lethal concentration of dicamba

- (Peer Reviewed Journal)Genetic diversity of day-neutral converted landrace, Gossypium hirsutum L., accessions
                                                        

- (Peer Reviewed Journal)McCarty Jr, J.C., Deng, D.D., Jenkins, J.N., Geng, L. 2018. Genetic diversity of day-neutral converted landrace, Gossypium hirsutum L., accessions. Euphytica. 214:173. https://doi.org/10.1007/s10681-018-2264-6.The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.)
                                                        

- (Peer Reviewed Journal)Thyssen, G.N., Naoumkina, M.A., McCarty, J.C., Jenkins, J.N., Florane, C.B., Li, P., Fang, D.D. 2018. The P450 gene CYP749A16 is required for tolerance to the sulfonylurea herbicide trifloxysulfuron sodium in cotton (Gossypium hirsutum L.). Biomed Central (BMC) Plant Biology. 18:186. https://doi.org/10.1186/s12870-018-1414-2.Introgression of Gossypium barbadense L. into Upland cotton germplasm RMBUP-C4S1
                                                        

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr, J.C., Deng, D.D., Geng, L., Hayes, R.W., Jones, D.C., Mammadova, R. 2018. Introgression of Gossypium barbadense L. into Upland cotton germplasm RMBUP-C4S1. Euphytica. 214:118. https://doi.org/10.1007/s10681-018-2200-9.Genetic control of flame retardancy in white lint cotton (gossypium hirsutum)

- (Abstract Only)Genetic and transcriptomic dissection of the fiber length trait using a cotton (Gossypium hirsutum L.) MAGIC population.

- (Abstract Only)Pond and irrigation model (PIM): a tool for simultaneously evaluating pond water availability and crop irrigation demand

- (Peer Reviewed Journal)Ouyang, Y., Feng, G.G., Leininger, T., Read, J.J., Jenkins, J.N. 2018. Pond and irrigation model (PIM): a tool for simultaneously evaluating pond water availability and crop irrigation demand. Water Resources Management. 32(9):2969-2983.Harvest management effects on "Tifton 44" Bermundagrass phosphorous removal and nutritive value
                                                        

- (Peer Reviewed Journal)Read, J.J., Lang, D., Adeli, A., Jenkins, J.N. 2018. Harvest management effects on "Tifton 44" Bermundagrass phosphorous removal and nutritive value. Agronomy Journal. 110:879-889. doi:10.2134/agronj2017.08.0480.Recent developments in fiber genomics of tetraploid cotton species
                                                        

- (Book / Chapter)Ayubov, M.S., Abdurakhmonov, I.Y., Sripathi, V.R., Saha, S., Norov, T.M., Buriev, Z.T., Shermatov, S.E., Ubaydullaeva, K.A., Mccarty Jr, J.C., Deng, D.D., Jenkins, J.N. 2017. Recent developments in fiber genomics of tetraploid cotton species. Cotton. 6:123-152. 10.5772/intechopen.72922.Rain water deficit and irrigation demand for row crops in Mississippi Blackland Prairie
                                                        

- (Peer Reviewed Journal)Feng, G.G., Ouyang, Y., Adeli, A., Read, J.J., Jenkins, J.N. 2018. Rain water deficit and irrigation demand for row crops in Mississippi Blackland Prairie. Soil Science Society of America Journal. 82:423-435. https://doi.org/10.2136/sssaj2017.06.0190.QTL mapping for flowering-time and photoperiod insensitivity of wild cotton Gossypium darwinii Watt
                                                        

- (Peer Reviewed Journal)Kushanov, F., Buriev, Z.T., Shermatov, S.E., Turaev, O.S., Norov, T., Pepper, A.E., Saha, S., Ulloa, M., Yu, J., Jenkins, J.N., Abdukarimov, A., Abdurakhmonov, I.Y. 2017. QTL mapping for flowering-time and photoperiod insensitivity of wild cotton Gossypium darwinii Watt. PLoS One. https://doi.org/10.1371/journal.pone.0186240.Rain water deficit and irrigation demand of major row crops in the Mississippi Delta

- (Peer Reviewed Journal)Tang, Q., Feng, G.G., Fisher, D.K., Zhang, H., Ouyang, Y., Adeli, A., Jenkins, J.N. 2017. Rain water deficit and irrigation demand of major row crops in the Mississippi Delta. American Society of Agricultural and Biological Engineers. 61(3):927-935.A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

- (Abstract Only)Genome-wide identification and characterization of microRNAs differenytially expressed in fibers in a cotton phytochrome A1 RNAi line

- (Peer Reviewed Journal)Miao, Q., Deng, P., Saha, S., Jenkins, J.N., Hsu, C., Abdurakhmonov, I.Y., Buriev, Z.T., Pepper, A., Ma, D. 2017. Genome-wide identification and characterization of microRNAs differenytially expressed in fibers in a cotton phytochrome A1 RNAi line. PLoS One. 12(6):e0179381.Evaluation of reference crop evapotranspiration methods in arid, semi-arid and humid regions

- (Peer Reviewed Journal)Gao, F., Feng, G.G., Ouyang, Y., Wang, H., Fisher, D.K., Adeli, A., Jenkins, J.N. 2017. Evaluation of reference crop evapotranspiration methods in arid, semi-arid and humid regions. Journal of the American Water Resources Association. doi:10.1111/1752-1688.12530.Organic amendments and nutrient leaching in soil columns
                                                        

- (Peer Reviewed Journal)Adeli, A., Read, J.J., Feng, G.G., Jenkins, J.N. 2017. Organic amendments and nutrient leaching in soil columns. Journal of Environmental Quality. 109:1294-1302.Genotypic comparisons of chromosomes 01, 04 and 18 from three tetraploid species of gossypium in topcrosses with five elite cultivars of G. hirsutum L
                                                        

- (Peer Reviewed Journal)Jenkins, J.N., Mccarty Jr, J.C., Campbell, B.T., Hayes, R.W., Wu, J., Saha, S., Stelly, D.M. 2017. Genotypic comparisons of chromosomes 01, 04 and 18 from three tetraploid species of gossypium in topcrosses with five elite cultivars of G. hirsutum L. Euphytica. 213:107.Effects of plant density on boll retention and yield of cotton
                                                        

- (Peer Reviewed Journal)McCarty Jr, J.C., Jenkins, J.N., Hayes, R.W., Wubben, M. 2017. Effects of plant density on boll retention and yield of cotton. American Journal of Plant Sciences. 8:891-906.A model to estimate hydrological processes and water budget from an irrigation pond in Mississippi

- (Peer Reviewed Journal)Tri-species shuffling of chromosomes to study the effects on fiber traits using chromosome substitution lines

- (Peer Reviewed Journal)Saha, S., Wu, J., Jenkins, J.N., Mccarty Jr, J.C., Campbell, B.T., Hayes, R.W., Stelly, D.M. 2017. Tri-species shuffling of chromosomes to study the effects on fiber traits using chromosome substitution lines. Crop Science. 57(3):1211-1226.Individual and combined contributions of the Renbarb1, Renbarb2, and Renbarb3 quantitative trait loci to reniform nematode (Rotylenchulus reniformis Linford & Oliveira) resistance in Upland Cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Wubben, M., McCarty Jr, J.C., Jenkins, J.N., Callahan, F.E., Deng, D.D. 2017. Individual and combined contributions of the Renbarb1, Renbarb2, and Renbarb3 quantitative trait loci to reniform nematode (Rotylenchulus reniformis Linford & Oliveira) resistance in Upland Cotton (Gossypium hirsutum L.). Euphytica. 213:1-9.Genetic effects of chromosomes 01, 04, and 18 from three tetraploid gossypium species in topcrosses with five elite cultivars
                                                        

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr, J.C., Campbell, B.T., Hayes, R.W., Wu, J., Saha, S., Stelly, D. 2017. Genetic effects of chromosomes 01, 04, and 18 from three tetraploid gossypium species in topcrosses with five elite cultivars. Crop Science. 57:1338-1346.Four chromosome-specific (Gossypium barbadense chromosome 5sh) Upland cotton RILs with improved elongation
                                                        

- (Peer Reviewed Journal)Saha, S., Jenkins, J.N., McCarty Jr, J.C., Hayes, R.W., Stelly, D.M., Campbell, B.T. 2017. Four chromosome-specific (Gossypium barbadense chromosome 5sh) Upland cotton RILs with improved elongation. Journal of Plant Registrations. 11(2):165-167.Broiler litter x industrial by-products reduce nutrients and microbial losses in surface runoff when applied to forages
                                                        

- (Peer Reviewed Journal)Adeli, A., Read, J.J., Brooks, J.P., Miles, D.M., Feng, G.G., Jenkins, J.N. 2017. Broiler litter x industrial by-products reduce nutrients and microbial losses in surface runoff when applied to forages. Journal of Environmental Quality. 46:339-347.Registration of six germplasm lines of cotton, Gosspyium hirsutum L. with resistance to root-knot and reniform nematodes
                                                        

- (Germplasm Registration)Mccarty Jr, J.C., Jenkins, J.N., Wubben, M., Hayes, R.W., Callahan, F.E., Deng, D.D. 2017. Registration of six germplasm lines of cotton, Gosspyium hirsutum L. with resistance to root-knot and reniform nematodes. Journal of Plant Registrations. 11:168-171.A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton
                                                        

- (Peer Reviewed Journal)Islam, M.S., Thyssen, G.N., Jenkins, J.N., Zeng, L., Delhom, C.D., McCarty, J.C., Deng, D.D., Hinchliffe, D.J., Jones, D.C., Fang, D.D. 2016. A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton. BMC Genomics. 17:903. https://doi.org/10.1186/s12864-016-3249-2.Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers

- (Peer Reviewed Journal)Kushanov, F.N., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Saha, S., Ulloa, M., Jenkins, J.N., Abdukarimov, A., Abdurakhmonov, I.Y. 2016. Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers. BioMed Central (BMC) Genetics. 17:141.Estimating the ratio of pond size to irrigated soybeans land in Mississippi: A case study

- (Peer Reviewed Journal)Ouyang, Y., Feng, G.G., Read, J.J., Leininger, T., Jenkins, J.N. 2017. Estimating the ratio of pond size to irrigated soybeans land in Mississippi: A case study. Water Science and Technology. pp. 1639-1647.Irrigation scheduling as affected by field capacity and wilting point water content from different data sources

- (Abstract Only)Trend analysis and forecast of precipitation, reference evapotranspiration and rainfall deficit in the Blackland Prairie of eastern Mississippi

- (Peer Reviewed Journal)Feng, G.G., Cobb, S., Abdo, Z., Fisher, D.K., Ouyang, Y., Adeli, A., Jenkins, J.N. 2016. Trend analysis and forecast of precipitation, reference evapotranspiration and rainfall deficit in the Blackland Prairie of eastern Mississippi. Agricultural and Forest Meteorology. 55:1425-1439.Simulating soybean productivity under rainfed conditions for major soil types using APEX model in East Central Mississippi
                                                        

- (Peer Reviewed Journal)Zhang, B., Feng, G.G., Read, J.J., Kong, X., Ouyang, Y., Adeli, A., Jenkins, J.N. 2016. Simulating soybean productivity under rainfed conditions for major soil types using APEX model in East Central Mississippi. Agricultural Water Management. 177:379-391.Simulated yield potential by irrigation and yield gap of rainfed soybean using APEX model in a humid region

- (Peer Reviewed Journal)Zhang, B., Feng, G.G., Kong, X., Lal, R., Ouyang, Y., Adeli, A., Jenkins, J.N. 2016. Simulated yield potential by irrigation and yield gap of rainfed soybean using APEX model in a humid region. Field Crops Research. 177(2016):440-453.Effects of tillage and broiler litter on crop productions in an eroded soil

- (Peer Reviewed Journal)Adeli, A., Dabney, S.M., Tewolde, H., Jenkins, J.N. 2016. Effects of tillage and broiler litter on crop productions in an eroded soil. Soil and Tillage Research. 165:198-209.Optimum poultry litter rates for maximum profit vs. yield in cotton production

- (Peer Reviewed Journal)Coupling of MIC-3 overexpression with the chromosome 11 and 14 root-knot nematode (RKN) (Meloidogyne incognita) resistance QTLs provides insights into the regulation of the RKN resistance response in Upland cotton...
                                                        

- (Peer Reviewed Journal)Wubben, M., Callahan, F.E., Jenkins, J.N., Deng, D.D. 2016. Coupling of MIC-3 overexpression with the chromosome 11 and 14 root-knot nematode (RKN) (Meloidogyne incognita) resistance QTLs provides insights into the regulation of the RKN resistance response in Upland cotton.... Theoretical and Applied Genetics. 129:1759-1767.Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li1) and -2 (Li2) revealed a role for miRNAs and their targets in cotton fiber elongation
                                                        

- (Peer Reviewed Journal)Naoumkina, M.A., Thyssen, G.N., Fang, D.D., Hinchliffe, D.J., Florane, C.B., Jenkins, J.N. 2016. Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li1) and -2 (Li2) revealed a role for miRNAs and their targets in cotton fiber elongation. BMC Genomics. 17:360. https://doi.org/10.1186/s12864-016-2715-1.Subsurface banding, placement of pelletized poultry litter in cotton
                                                        

- (Peer Reviewed Journal)Adeli, A., Mccarty Jr, J.C., Read, J.J., Willers, J.L., Jenkins, J.N., Feng, G.G. 2016. Subsurface banding, placement of pelletized poultry litter in cotton. Agronomy Journal. 108(4):1356-1366.Improving estimates of N and P loads in irrigation water from swine manure lagoons
                                                        

- (Peer Reviewed Journal)Mclaughlin, M.R., Brooks, J.P., Adeli, A., Jenkins, J.N. 2016. Improving estimates of N and P loads in irrigation water from swine manure lagoons. Irrigation Science. 34(3):245-260.Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species

- (Peer Reviewed Journal)Ulloa, M., Wang, C., Saha, S., Hutmacher, R.B., Stelly, D.M., Jenkins, J.N., Roberts, P. 2016. Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species. Genetica. 144(2):167-179.RNA interference for functional genomics and improvement of cotton (Gossypium species)
                                                        

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Ayubov, M., Ubaydullaeva, K.A., Buriev, B.T., Shermatov, S.E., Ruziboev, H., Shapulatov, U.M., Saha, S., Ulloa, M., Yu, J., Percy, R.G., Devor, E.J., Govind, S.C., Sripathi, V.R., Kumpatla, S.P., Van De Kroll, A., Hake, K.D., Khamidov, K., Salikhov, S.I., Jenkins, J.N., Abdukarimov, A., Pepper, A.E. 2016. RNA interference for functional genomics and improvement of cotton (Gossypium species). Frontiers in Plant Science. 7:202.Simulating the fate of fall- and spring-applied poultry litter nitrogen in corn production
                                                        

- (Peer Reviewed Journal)Feng, G.G., Tewolde, H., Ma, L., Adeli, A., Sistani, K.R., Jenkins, J.N. 2015. Simulating the fate of fall- and spring-applied poultry litter nitrogen in corn production. Soil Science Society of America Journal. 79:1804-1814.Soil water sensor-based and evapotranspiration-based irrigation scheduling for soybean production on a Blackland Prairie soil in humid climate

- (Abstract Only)Soybean productivity under various rainfed conditions and irrigation levels determined by WinAPEX model in Blackland Prairie of East Central Mississippi State

- (Abstract Only)Effects of soil water holding capacity on evapotranspiration and irrigation scheduling

- (Abstract Only)Field experimental design comparisons to detect field effects associated with agronomic traits in Upland cotton

- (Peer Reviewed Journal)Bondalapati, K.D., Jenkins, J.N., Mccarty Jr, J.C., Wu, J. 2015. Field experimental design comparisons to detect field effects associated with agronomic traits in Upland cotton. Euphytica. 206:747-757.Characterization of small RNAs and their targets of Fusarium oxysporum infected and non-infected cotton seedlings

- (Peer Reviewed Journal)Shapulatov, U.M., Buriev, Z.T., Ulloa, M., Saha, S., Devor, E.J., Ayubov, M.S., Norov, T.M., Shermatov, S.E., Abdukarimov, A., Jenkins, J.N., Abdurakhmonov, I.Y. 2016. Characterization of small RNAs and their targets of Fusarium oxysporum infected and non-infected cotton seedlings. Plant Molecular Biology Reporter. 34:698-707.Identification and confirmation of root-knot nematode and Fusarium wilt disease resistance traits in cotton substitution lines

- (Abstract Only)Wang, C., Ulloa, M., Saha, S., Stelly, D.M., Jenkins, J.N., Roberts, P. 2015. Identification and confirmation of root-knot nematode and Fusarium wilt disease resistance traits in cotton substitution lines [abstract]. The American Phytopathological Society (APS) Annual Meeting, August 1-5, 2015, Pasadena, California. P83-0.Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.)

- (Peer Reviewed Journal)Hulse-Kemp, A.M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D.D., Frelichowski, J.E., Giband, M., Hague, S., Hinze, L.L., Kochan, K., Riggs, R., Scheffler, J.A., Udall, J.A., Ulloa, M., Wang, S., Zhu, Q., Bag, S.K., Bhardwaj, A., Burke, J.J., Byers, R.L., Claverie, M., Gore, M.A., Harker, D.B., Islam, M.S., Jenkins, J.N., Jones, D.C., Lacape, J., Llewellyn, D.J., Percy, R.G., Pepper, A.E., Poland, J.A., Rai, K., Sawant, S.V., Singh, S., Spriggs, A., Taylor, J.M., Wang, F., Yourstone, S.M., Zheng, X., Lawley, C.T., Ganal, M.W., Van Deynze, A., Wilson, L.W., Stelly, D.M. 2015. Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L.). Genes, Genomes, Genetics. 5:1187-1209. doi:10.1534/g3.115.018416.Broiler house litter sampling: the final frontier

- (Abstract Only)Miles, D.M., Brooks, J.P., Rowe, D.E., Moore Jr, P.A., Evans, J.D., Jenkins, J.N. 2015. Broiler house litter sampling: the final frontier. ASABE Annual International Meeting. Paper number 152152501. doi: 10.13031/aim.20152152501.A farm pond water irrigation management system in Mid-South United States

- (Abstract Only)Feng, G.G., Ouyang, Y., Read, J.J., Adeli, A., Reginelli, D., Jenkins, J.N. 2015. A farm pond water irrigation management system in Mid-South United States. American Society of Agricultural and Biological Engineers Conference.New Orleans, LA, July 26-29, 2015.Molecular confirmation of Gossypium hirsutum chromosome substitution lines

- (Peer Reviewed Journal)Saha, S., Stelly, D.M., Makamov, A.K., Ayubov, M., Raska, D., Gutierrez, O.A., Manchali, S., Jenkins, J.N., Deng, D.D., Abdurakhmonov, I.Y. 2016. Molecular confirmation of Gossypium hirsutum chromosome substitution lines. Genetica. 144(3):289-306.Soybean yield and nutrient utilization following long-term pelletized broiler litter application to cotton
                                                        

- (Peer Reviewed Journal)Adeli, A., Read, J.J., McCarty Jr., J.C., Jenkins, J.N., Feng, G.G. 2015. Soybean yield and nutrient utilization following long-term pelletized broiler litter application to cotton. Agronomy Journal. 107:1128-1134.Improving N and P estimates for swine manure lagoon irrigation water

- (Abstract Only)Composting and gypsum amendment of broiler litter to reduce nutrient leaching loss
                                                        

- (Peer Reviewed Journal)Adeli, A., Sheng, J., Jenkins, J.N., Feng, G.G. 2015. Composting and gypsum amendment of broiler litter to reduce nutrient leaching loss. Journal of Environmental Quality. 44:676-683.Overexpression of MIC-3 indicates a direct role for the MIC gene family in mediating Upland cotton (Gossypium hirsutum) resistance to root-knot nematode (Meloidogyne incognita)
                                                        

- (Peer Reviewed Journal)Wubben, M., Callahan, F.E., Velten, J.P., Burke, J.J., Jenkins, J.N. 2015. Overexpression of MIC-3 indicates a direct role for the MIC gene family in mediating Upland cotton (Gossypium hirsutum) resistance to root-knot nematode (Meloidogyne incognita). Theoretical and Applied Genetics. 128:199-209.Characterization of a novel RING-type ubiquitin E3 ligase GhRING2 differentially expressed in cotton fiber
                                                        

- (Peer Reviewed Journal)Soma, S., Hsu, C., Saha, S., Jenkins, J.N., Ma, D. 2014. Characterization of a novel RING-type ubiquitin E3 ligase GhRING2 differentially expressed in cotton fiber. American Journal of Plant Sciences. 5:3364-3379.Detection, validation, and application of genotyping-by-sequencing based single nucleotide polymorphisms in upland cotton

- (Peer Reviewed Journal)Islam, M.S., Thyssen, G.N., Jenkins, J.N., Fang, D.D. 2014. Detection, validation, and application of genotyping-by-sequencing based single nucleotide polymorphisms in upland cotton. The Plant Genome. 8(1):1-10.Precision litter application practices for cotton production and soil properties

- (Abstract Only)Adeli, A., Jenkins, J.N., Mccarty Jr, J.C., Read, J.J., Tewolde, H. 2014. Precision litter application practices for cotton production and soil properties. American Society of Agronomy Abstracts. November 2-5, 2014, Longbeach, CA.Development of irrigation management practices for optimum yield and water use efficiency of soybean in east central Mississippi

- (Abstract Only)Feng, G.G., Read, J.J., Ouyang, Y., Jenkins, J.N. 2014. Development of irrigation management practices for optimum yield and water use efficiency of soybean in east central Mississippi. Agronomy Abstracts. CD-ROM.Evaluation of RZWQ2 model and management of poultry litter as corn nitrogen source in the mid-southern United States

- (Abstract Only)Feng, G.G., Tewolde, H., Ma, L., Sistani, K.R., Jenkins, J.N. 2014. Evaluation of RZWQ2 model and management of poultry litter as corn nitrogen source in the mid-southern United States. Agronomy Abstracts. CD-ROM.Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Fang, D.D., Jenkins, J.N., Deng, D.D., McCarty Jr, J.C., Li, P., Wu, J. 2014. Quantitative trait loci analysis of fiber quality traits using a random-mated recombinant inbred population in Upland cotton (Gossypium hirsutum L.). Biomed Central (BMC) Genomics. 15:397.Registration of RMPAP-C4, a random-mated primitive race accession cotton germplasm population
                                                        

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N., Gutierrez, O.A., Hayes, R.W. 2014. Registration of RMPAP-C4, a random-mated primitive race accession cotton germplasm population. Journal of Plant Registrations. 8:313-317.Detection of Fusarium oxysporum f. sp. vasinfectum race 3 by single-base extension method and allele-specific polymerase chain reaction

- (Peer Reviewed Journal)Emgamberdiev, S.S., Salakhudinov, I.B., Abdullaev, A., Ulloa, M., Saha, S., Radjapov, F., Mullaohunov, B., Mansurov, D., Jenkins, J.N., Abdurakhmonov, I.Y. 2014. Detection of Fusarium oxysporum f. sp. vasinfectum race 3 by single-base extension method and allele-specific polymerase chain reaction. Canadian Journal of Plant Pathology. 36(2):216-223.Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton

- (Abstract Only)Nichols, R.L., Bell, A.A., Creech, R.C., Chee, P.W., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J., Lawrence, K.L., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Thaxton, P., Ulloa, M., Wallace, T., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton. Proceedings of the Beltwide Cotton Conferences. CDROM.Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton

- (Abstract Only)Nichols, R.L., Bell, A.A., Creech, R.G., Chee, P., Davis, R.F., Erpelding, J.E., Fang, D.D., Gutierrez, O.A., Hake, K.D., Jenkins, J.N., Jones, J.E., Lawrence, K.S., Mccarty Jr, J.C., Overstreet, C., Roberts, P.A., Robinson, A.F., Sikkens, R.B., Starr, J.L., Stelly, D.M., Stetina, S.R., Stipanovic, R.D., Smith-Thaxton, P., Ulloa, M., Wallace, T.P., Wang, C., Weaver, D.B., Wubben, M., Zhang, J. 2014. Accomplishments of a 10-year initiative to develop host plant resistance to root-knot and reniform nematodes in cotton [abstract]. Beltwide Cotton Conferences, January 6-8, 2014, New Orleans, LA. p. 662.Molecular characterization of the reniform nematode C-type lectin gene family reveals a likely role in mitigating environmental stresses during plant parasitism
                                                        

- (Peer Reviewed Journal)Ganji, S., Jenkins, J.N., Wubben, M. 2014. Molecular characterization of the reniform nematode C-type lectin gene family reveals a likely role in mitigating environmental stresses during plant parasitism. Gene. 537:269-278.Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Buriev, Z.T., Saha, S., Jenkins, J.N., Abdukarimov, A., Pepper, A.E. 2014. Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L. Nature Communications. 5:3062. DOI:10.1038./ncomms4062.Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Thyssen, G.N., McCarty, J.C., Li, P., Jenkins, J.N., Fang, D.D. 2014. Genetic mapping of non-target-site resistance to a sulfonylurea herbicide (Envoke®) in Upland cotton (Gossypium hirsutum L.). Molecular Breeding. 33:341-348.Molecular characterization of Uzbekistan isolates of fusarium oxysporum f. sp. vasinfectum

- (Peer Reviewed Journal)Egamberdiev, S.S., Ulloa, M., Saha, S., Salakhudinov, I.B., Abdullaev, A., Glukhova, L.A., Adylova, A.T., Scheffler, B.E., Jenkins, J.N., Abdurakhmonov, I.Y. 2013. Molecular characterization of Uzbekistan isolates of fusarium oxysporum f. sp. vasinfectum. Journal of Plant Science and Molecular Breeding. 2:3.Efect of tri-species chromosome shuffling on agronomic and fiber traits in Upland cotton

- (Abstract Only)Pollen genotyping in cotton for genetic linkage analysis

- (Abstract Only)Aziz, A., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2013. Pollen genotyping in cotton for genetic linkage analysis. Proceedings Research: Celebrating Excellence, April 1-5, 2013, Nashville, TN. CD ROM.Berseem clover seeding rate and harvest management effects on forage yields and nutrient uptake in a swine-effluent spray field

- (Peer Reviewed Journal)Read, J.J., McLaughlin, M.R., Jenkins, J.N., Fairbrother, T.E. 2013. Berseem clover seeding rate and harvest management effects on forage yields and nutrient uptake in a swine-effluent spray field. Grass and Forage Science. 69:365-375.Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars

- (Proceedings)Xu, Y., Jenkins, J.N., McCarty Jr, J.C., Wu, J. 2013. Variation analysis for fiber quality traits among different positions in eight Upland cotton cultivars. In: W. Song, editors.  Proceedings Twenty-fourth Annual Kansas State University Conference on Applied Statistics in Agriculture, April 29-May 1, 2012, Manhattan, Kansas.  p. 309-320.Two simple methods for the collection of individual life stages of reniform nematode, Rotylenchulus reniformis

- (Peer Reviewed Journal)Ganji, S., Wubben, M., Jenkins, J.N. 2013. Two simple methods for the collection of individual life stages of reniform nematode, Rotylenchulus reniformis. Journal of Nematology. 45:87-91.Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Jones, D.C. 2013. Registration of RMBUP-C4, a random mated population with Gossypium hirsutum L. alleles, introgresssed into Upland cotton germplasm. Journal of Plant Registrations. 7:224-228.Genetic analysis without replications: Model evaluation and application in spring wheat

- (Peer Reviewed Journal)Wu, J., Bondalapati, K., Glover, K., Berzonsky, W., Jenkins, J.N., McCarty, J.C. 2013. Genetic analysis without replications: model evaluation and application in spring wheat. Euphytica. 190:447-458.Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N., Wubben, M., Gutierrez, O.A., Hayes, R.W., Callahan, F.E., Deng, D.D. 2013. Registration of three germplasm lines of cotton derived from Gossypium barbadense L. accession GB713 with resistance to the reniform nematode. Journal of Plant Registrations. 7:220-223.Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines

- (Peer Reviewed Journal)Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2013. Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 126:109-117.Detecting epistatic effects associated with cotton traits by a modified MDR approach

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Glover, K. 2012. Detecting epistatic effects associated with cotton traits by a modified MDR approach. Euphytica. 187:289-301.Effects of pelletized and non-pelletized poultry litter and nutrient immobilizing agent on surface runoff water quality from a forage based system

- (Abstract Only)Adeli, A., McLaughlin, M.R., Brooks, J.P., Read, J.J., Jenkins, J.N. 2012. Effects of pelletized and non-pelletized poultry litter and nutrient immobilizing agent on surface runoff water quality from a forage based system [abstract]. Agronomy Abstracts. CD-ROM.Over-expression of MIC3 reduces cotton susceptibility to root-knot nematode

- (Abstract Only)Wubben, M., Callahan, F.E., Jenkins, J.N., Velten, J.P. 2012. Over-expression of MIC3 reduces cotton susceptibility to root-knot nematode [abstract]. Society of Nematologists Conference. CD-ROM.A cotton fiber associated cyclin-dependent kinase A gene: Characterization and chromosomal location

- (Peer Reviewed Journal)Gao, W., Saha, S., Ma, D., Guo, Y., Jenkins, J.N., Stelly, D.M. 2012. A cotton-fiber-associated cyclin-dependent kinase A gene: Characterization and chromosomal location. International Journal of Plant Genomics. 2012:613812.MiRNAs from cotton roots infected with Meloidogyne incognita

- (Abstract Only)Shapulatov, U.M., Abdusalom, M., Saha, S., Wubben, M., Jenkins, J.N., Buriev, Z.T., Ulloa, M., Scheffler, B.E., Abdurakhmonov, I.Y. 2012. MiRNAs from cotton roots infected with Meloidogyne incognita [abstract]. National Cotton Council Beltwide Cotton Conference. p. 730.Molecular confirmation of Gossypium hirsutum chromosome substitution lines and interspecific F1 hypoaneuploids

- (Abstract Only)Saha, S., Stelly, D.M., Raska, D., Hulse, A., Gutierrez, O.A., Makamov, A., Gotmare, V., Wang, F., Manchali, S., Jenkins, J.N., Abdurakhmonov, I.Y. 2012. Molecular confirmation of Gossypium hirsutum chromosome substitution lines and interspecific F1 hypoaneuploids [abstract]. National Cotton Council Beltwide Cotton Conference. p. 756-757.Association of SSR markers with important fiber traits in Upland cotton

- (Abstract Only)Saha, S., Emgamberdiev, S.S., Wu, J., Jenkins, J.N., McCarty Jr, J.C., Deng, D.D., Abdurakhmonov, I. 2012. Association of SSR markers with important fiber traits in Upland cotton [abstract]. National Cotton Council Beltwide Cotton Conference. p. 754.A categorical, improper probability method for combining NDVI and LiDAR elevation information for potential cotton precision agricultural applications

- (Peer Reviewed Journal)Willers, J.L., Wu, J., O'Hara, C., Jenkins, J.N. 2012. A categorical, improper probability method for combining NDVI and LiDAR elevation information for potential cotton precision agricultural applications. Computers and Electronics in Agriculture. 82:15-22.Evaluation of precision litter application practices for cotton production and soil quality

- (Proceedings)A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome

- (Peer Reviewed Journal)Yu, J., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V., Percy, R.G. 2012. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes, Genomes, Genetics. 2:43-58.Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in topcrosses with five elite Upland cotton G. hirsutum L. cultivars

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr, J.C., Wu, J., Hayes, R.W., Stelly, D. 2012. Genetic effects of nine Gossypium barbadense L. chromosome substitution lines in top crosses with five elite Upland cotton G. hirsutum L. cultivars. Euphytica. 187:161-173.Broiler litter type and placement effects on corn growth, nitrogen utilization and residual soil nitrate-nitrogen in a no-till field

- (Peer Reviewed Journal)Adeli, A., Tewolde, H., Jenkins, J.N. 2012. Broiler litter type and placement effects on corn growth, nitrogen utilization and residual soil nitrate-nitrogen in a no-till field. Agronomy Journal. 104:43-48.Evaluation of precision litter application practices for cotton production and soil properties

- (Abstract Only)Adeli, A., Jenkins, J.N., McCarty Jr., J.C., Tewolde, H., Read, J.J. 2012. Evaluation of precision litter application practices for cotton production and soil properties. National Cotton Council Beltwide Cotton Conference, January 3-6, 2012, Orlando, FL. CD-ROM.Identification and characterization of C-type lectin genes from the reniform nematode

- (Abstract Only)Ganji, S., Wubben, M., Jenkins, J.N. 2012. Identification and characterization of C-type lectin genes from the reniform nematode. Proceedings of 2012 Beltwide Cotton Conferences. CD-ROM.MIC3 over-expression reduces cotton susceptibility to root-knot nematode

- (Abstract Only)Wubben, M., Callahan, F.E., Jenkins, J.N., Velten, J.P. 2012. MIC3 over-expression reduces cotton susceptibility to root-knot nematode. Proceedings of 2012 Beltwide Cotton Conferences. CD-ROM.International efforts to protect the global cotton genetic resources

- (Abstract Only)Campbell, B.T., Park, W., Percy, R.G., Frelichowski, J.E., Saha, S., Jenkins, J.N., Mayee, C., Gormare, V., Dessauw, D., Giband, M., Du, X., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, I.Y., Abdukarimov, A., Rizaeva, S.M., Adullaev, A., Barroso, P., Hoffmann, L.V., Padua, J.G., Podolnaya, L. 2011. International efforts to protect the global cotton genetic resources [Abstract]. In: Proceedings of the American Society of Agronomy, Crop Science Society of America, Soil Science Society of America International Annual Meeting, October 16-19, 2011, San Antonio, Texas. CDROM.Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement

- (Abstract Only)Saha, S., Stelly, D.M., Raska, D., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Abdusalom, M., Gotmare, V., Abdurakhmonov, I.Y., Campbell, B.T. 2011. Interspecific chromosome substitution lines from Gossypium barbadense and G. tomentosum in Upland cotton improvement. Proceedings World Cotton Research Conference-5. p. 129.Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode

- (Germplasm Registration)McCarty, Jr., J.C., Jenkins, J.N., Wubben, M., Hayes, R.W., Lafoe, M. 2012. Registration of three germplasm lines of cotton derived from Gossypium hirsutum L. accession T2468 with moderate resistance to the reniform nematode. Journal of Plant Registrations. 6:85-87.Genetic diversity in Gossypium genus

- (Book / Chapter)Abdurakhmonov, I.K., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Urmonov, K., Kushanov, F., Egamberdiev, S.S., Shapulatov, U., Abdukarimov, A., Saha, S., Jenkins, J.N., Kohel, R.J., Yu, J., Pepper, A.E., Kumpatala, S., Ulloa, M. 2012. Genetic diversity in Gossypium genus. In: Caliskan, M., editor. Genetic Diversity in Plants. InTech. p. 313-338.Chromosome substituution lines:  Concept, development and utilization in the genetic improvement of upland cotton

- (Book / Chapter)Saha, S., Stelly, D.M., Raska, D.A., Wu, J., Jenkins, J.N., McCarty, Jr., J.C., Makamov, A., Gotmare, V., Abudurakhmonov, I., Campbell, B.T. 2012. Chromosome substitution lines:  Concept, development and utilization in the genetic improvement of upland cotton. In: Abdurakhmoov, I.Y., editor. Plant Breeding. InTech. p. 107-128.Continuous and residual effects of broiler litter application to cotton on soil properties

- (Peer Reviewed Journal)Adeli, A., Tewolde, H., Rowe, D.E., Sistani, K.R. 2011. Continuous and residual effects of broiler litter application to cotton on soil properties. Soil Science. 176:668-675.Molecular evolution of the clustered MMIC-3 multigene family of Gossypium species

- (Peer Reviewed Journal)Buriev, Z.T., Saha, S., Shermatov, S.E., Jenkins, J.N., Abdukarimov, A., Stelly, D.M., Abdurakhmonov, I.Y. 2011. Molecular evolution of the clustered MIC-3 multigene family of Gossypium species. Theoretical and Applied Genetics. 123:1359-1373.SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr., J.C., Wubben, M.J., Hayes, R.W., Gutierrez, O.A., Callahan, F.E., Deng, D.D. 2012. SSR markers for marker assisted selection of root-knot nematode (Meloidogyne incognita) resistant plants in cotton (Gossypium hirsutum L.). Euphytica. 183:49-54.Comparisons of Four Approximation Algorithms for Large-Scale Linkage Map Construction

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Lou, X. 2011. Comparisons of four approximation algorithms for large-scale linkage map construction. Theoretical and Applied Genetics. 123:649-655.Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines

- (Abstract Only)Aziz, A.N., Kommireddy, V.L., Jenkins, J.N., McCarty Jr, J.C., Stelly, D.M., Saha, S. 2011. Enrichment of chromosome 17 specific molecular markers of Pima cotton substituted in Upland cotton lines. Proceedings 1890 Association of Research Directors, Biennial Research Symposium, April 9-11, 2011, Atlanta, GA. CD ROM.Animal and industrial by-products management strategies for sustainable agricultural production system and environmental quality

- (Abstract Only)Adeli, A., Jenkins, J.N., Brooks, J.P. 2011. Animal and industrial by-products management strategies for sustainable agricultural production system and environmental quality. In Papanikos, Gregory T. (Ed.), 4th Annual International Symposium on Agricultural Research, July 18-21, 2011, Athens, Greece. p. 13.Synergistic effect of FGD by-product and broiler litter application on cotton yield, N utilization and soil nutrient concentrations in a no-till field

- (Abstract Only)Adeli, A., Jenkins, J.N., Tewolde, H. 2011. Synergistic effect of FGD by-product and broiler litter application on cotton yield, N utilization and soil nutrient concentrations in a no-till field [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1355.Delineation of Interspecific Epistasis on Fiber Quality Traits in Gossypium hirsutum by ADAA Analysis of Intermated G. barbadense Chromosome Substitution Lines

- (Peer Reviewed Journal)Saha, S., Wu, J., Jenkins, J.N., McCarty, J.C., Hayes, R.W., Stelly, D.M. 2011. Delineation of interspecific epistasis on fiber quality traits in Gossypium hirsutum by ADAA analysis of intermated G. barbadense chromosome substitution lines. Theoretical and Applied Genetics. 122:1351-1361.Effects of within-row plant spacings on growth, boll retention, and yield of four cotton cultivars

- (Peer Reviewed Journal)McCarty Jr., J.C., Cash, L., Jenkins, J.N. 2011. Effects of within-row plant spacings on growth, boll retention, and yield of four cotton cultivars. Mississippi Agricultural and Forestry Experiment Station Bulletin 1191. 12 p.A generalized approach and computer tool for quantitative genetics study

- (Proceedings)Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2011. A generalized approach and computer tool for quantitative genetics study. Proceedings Applied Statistics in Agriculture, April 25-27, 2010, Manhattan, KS. p.85-106.Cover Crop Use for Managing Broiler Litter Applied to Cotton in the Fall

- (Peer Reviewed Journal)Adeli, A., Tewolde, H., Jenkins, J.N., Rowe, D.E. 2011. Cover crop use for managing broiler litter applied to cotton in the fall. Agronomy Journal. 103:200-210.Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Genetic effects of individual chromosomes in cotton cultivars detected by using chromosome substitution lines as genetic probes. Genetica. 138:1171-1179.Molecular Evolution of Clustered MIC-3 (Meloidogyne Induced Cotton -3) Multigene Family of Gossypium Species

- (Abstract Only)Interspecific Chromosome Substitution Lines as Genetic Resources for Improvement, Trait Analyses and Genomic Inference

- (Abstract Only)Identification of QTL Regions and SSR Markers Associated with Resistance to Reniform Nematode in Gossypium barbadense L. accession GB713

- (Peer Reviewed Journal)Gutierrez, O., Robinson, A.F., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Callahan, F.E., Nichols, R.L. 2011. Identification of QTL regions and SSR markers associated with resistance to reniform nematode in Gossypium barbadense L. accession GB713. Theoretical and Applied Genetics. 122:271-280.Comparing high density LIDAR and medium resolution GPS generated elevation data for predicting yield stability

- (Peer Reviewed Journal)McKinion, J.M., Willers, J.L., Jenkins, J.N. 2010. Comparing high density LIDAR and medium resolution GPS generated elevation data for predicting yield stability. Computers and Electronics in Agriculture. 74:244-249.QTL Analysis of Resistance to Reniform Nematode in Gossypium barbadense L. Accession GB713

- (Abstract Only)Gutierrez, O.A., Robinson, A.F., Jenkins, J.N., McCarty Jr, J.C., Wubben, M., Callahan, F.E. 2010. QTL analysis of resistance to reniform nematode in Gossypium barbadense L. accession GB713. Agronomy Abstracts, American Society of Agronomy, October 31-November 3, 2010, Longbeach, CA. CD ROM.Coordination and collaboration to document the global cotton germplasm resources

- (Proceedings)Frelichowski, J.E., Campbell, B.T., Saha, S., Percy, R.G., Jenkins, J.N., Park, W., Mayee, C., Gotmare, V., Dessauw, D., Giband, M. 2010. Coordination and collaboration to document the global cotton germplasm resources. Proceedings of the International Cotton Genome Initiative Workshop, September 21-23, 2010, Canberra, Australia. p. 24.SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton

- (Peer Reviewed Journal)Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Wubben, M., Hayes, R.W., Callahan, F.E. 2010. SSR markers closely associated with genes for resistance to root-knot nematode on chromosomes 11 and 14 of upland cotton. Theoretical and Applied Genetics. 121:1323-1337.Broiler Litter Source, Placement and Timing on Corn Grain Yield, N Uptake and Recovery, and Soil Residual NO3-N

- (Abstract Only)Adeli, A., Tewolde, H., Jenkins, J.N. 2010. Broiler litter source, placement and timing on corn grain yield, N uptake and recovery, and soil residual NO3-N. Agronomy Abstracts. CD-ROM.Atypical Ligon Lintless-2 Phenotype in Cotton

- (Peer Reviewed Journal)An, C., Jenkins, J.N., McCarty Jr., J.C., Saha, S. 2010. Atypical Ligon Lintless-2 Phenotype in Cotton. Journal of Cotton Science. 14:13-16.Characterization and Promoter Analysis of a Cotton Ring-Type Ubiquitin Ligase (E3) Gene

- (Peer Reviewed Journal)Ho, M., Saha, S., Jenkins, J.N., Ma, D. 2010. Characterization and promoter analysis of a cotton ring-type ubiquitin ligase (E3) gene. Molecular Biotechnology. 46:140-148.Status of the global cotton germplasm resources

- (Peer Reviewed Journal)Campbell, B.T., Saha, S., Jenkins, J.N., Park, W., Percy, R.G., Frelichowski, J.E., Mayee, C., Gotmare, V., Dessauw, D., Giband, M., Du, X., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, I.Y., Abdukarimov, A., Rizaeva, S.M., Adullaev, A.A., Barroso, P.V., Padua, J.G., Hoffman, L.V., Podolnaya, L. 2010. Status of the global cotton germplasm resources. Crop Science. 50:1161-1179.Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits

- (Peer Reviewed Journal)Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Hayes, R.W., Stelly, D. 2010. Genetic Dissection of Chromosome Substitution Lines of Cotton to Discover Novel Gossypium barbadense L. Alleles for Improvement of Agronomic Traits. Journal of Theoretical and Applied Genetics. 120:1193-1205.Methodology for Developing a Crop Yield Stability Map for a Field

- (Abstract Only)McKinion, J.M., Willers, J.L., Jenkins, J.N. 2010. Methodology for developing a crop yield stability map for a field. National Cotton Council Beltwide Cotton Conference. pp. 501-511.Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses

- (Peer Reviewed Journal)Wu, J., McCarty Jr., J.C., Jenkins, J.N. 2010. Cotton Chromosome Substitution Lines Crossed with Cultivars: Genetic Model Evaluation and Seed Trait Analyses. Theoretical and Applied Genetics. 120:1473-1483.Designing experiments to evaluate the effectiveness of precision agricultural practices on research fields.  Part 1. Concepts for formulation.

- (Peer Reviewed Journal)Milliken, G., Willers, J.L., McCarter, K., Jenkins, J.N. 2010. Designing experiments to evaluate the effectiveness of precision agricultural practices on research fields.  Part 1. Concepts for their formulation. Operational Research: An International Journal (ORIJ). 10:329-348.Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Buriev, Z.T., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abdukarimov, A., Scheffler, B.E., Stelly, D.M. 2010. Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics. 120:587-606.Spatial analyses to evaluate multi-crop yield stability for a field

- (Peer Reviewed Journal)McKinion, J.M., Willers, J.L., Jenkins, J.N. 2010. Spatial Analyses to Evaluate Multi-crop Yield Stability for a Field. Computers and Electronics in Agriculture. 70:187-198.Breeding potential of introgressions into cotton:  genetic effects and heterosis

- (Peer Reviewed Journal)Wu, J., McCarty Jr, J.C., Jenkins, J.N., Meredith Jr, W.R. 2010. Breeding potential of introgressions into cotton: genetic effects and heterosis. Plant Breeding. 129:526-532.Use of fiber and fuzz mutants to detect QTL for yield components, seed, and fiber traits of Upland cotton

- (Peer Reviewed Journal)An, C., Jenkins, J.N., Wu, J., Guo, Y., McCarty Jr., J.C. 2010. Use of Fiber and Fuzz Mutants to Detect QTL for Yield Components, Seed, and Fiber Traits of Upland Cotton. Euphytica. 172:21-34.Phenotypic and molecular evaluation of cotton hairy roots as a model system for studying nematode resistance

- (Peer Reviewed Journal)Wubben, M., Callahan, F.E., Triplett, B.A., Jenkins, J.N. 2009. Phenotypic and Molecular Evaluation of Cotton Hairy Roots as a Model System for Studying Nematode Resistance. Plant Cell Reports. 28:1399-1409.Effects of broiler litter rate, timing and cover crop on cotton yield and residual soil N

- (Abstract Only)Adeli, A., Tewolde, H., Jenkins, J.N. 2009. Effects of broiler litter rate, timing and cover crop on cotton yield and residual soil N. American Society of Agronomy Abstracts. Novembeer 1-5, 2009, Pittsburgh, PA. CD-ROM.Categorical likelihood method for combining NDVI and elevation information for cotton precision agricultural applications

- (Abstract Only)Willers, J.L., Wu, J., Jenkins, J.N. 2010. Categorical likelihood method for combining NDVI and elevation information for cotton precision agricultural applications. Proceedings Fifth International Workshop on the Analysis of Multi-temporal Remote Sensing Images, July 28-30, 2009, Mystic, CT. p. l.SPATIALLY VARIABLE INSECTICIDE APPLICATIONS FOR EARLY SEASON CONTROL OF COTTON INSECT PESTS

- (Peer Reviewed Journal)McKinion, J.M., Jenkins, J.N., Willers, J.L., Zumanis, A. 2009. Spatially variable insecticide applications for early season control of cotton insect pests. Computers and Electronics in Agriculture. 67:71-79.Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr., J.C., Wu, J., Gutierrez, O. 2009. Genetic variance components and genetic effects among eleven diverse upland cotton lines and their F2 hybrids. Euphytica. 167:397-408.SSR-FACILITATED IDENTIFICATION OF INTERSPECIFIC HYPOANEUPLOID HYBRIDS OF GOSSYPIUM HIRSUTUM X G. TOMENTOSUM NUTT.

- (Peer Reviewed Journal)Gutierrez, O.A., Stelly, D.M., Saha, S., Jenkins, J.N., McCarty Jr., J.C., Raska, D.A., Scheffler, B.E. 2009. Integrative placement and orientation of non-redundant SSR loci in cotton linkage groups by deficiency analysis. Molecular Breeding. 23:693-707.Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Thaxton, P. 2009. Seed trait evaluation of Gossypium barbadense L. chromosomes/arms in a G. hirsutum L. background. Euphytica. 167:371-380.Global view of cotton germplasm resources

- (Abstract Only)Saha, S., Campbell, B.T., Jenkins, J.N., Park, W., Percy, R.G., Frelichowski, J.E., Mayee, C., Gotmare, V., Dessauw, D., Giband, M., Du, Y., Jia, Y., Constable, G., Dillon, S., Abdurakhmonov, A., Abdukarimov, A.A., Rizaeva, S., Adullaev, A.A., Barroso, P.A., Padua, J.G., Hoffmann, L.V. 2009. Global view of cotton germplasm resources. National Cotton Council Beltwide Cotton Conference. p. 658.Toward sequencing regions responsible for root-knot nematode resistance in cotton on chromosome 11.

- (Abstract Only)Roberts, P.A., Ulloa, M., Chee, P., Jenkins, J.N., Nichols, R.L. 2009. Toward sequencing regions responsible for root-knot nematode resistance in cotton on chromosome 11. Plant and Animal Genome Conference.Broiler litter application and tillage effects on restoration of degraded soils

- (Proceedings)Toward Sequencing Cotton Chromosome 11 Regions Responsible for Root-Knot Nematode Resistance.

- (Abstract Only)Roberts, P.A., Ulloa, M., Chee, P., Jenkins, J.N., Nichols, R.L. 2009. Toward Sequencing Cotton Chromosome 11 Regions Responsible for Root-Knot Nematode Resistance. National Cotton Council Beltwide Cotton Conference.Genetic changes in plant growth and their associations with chromosomes from Gossypium hirsutum L. in G. hirsutum L.

- (Peer Reviewed Journal)Wu, J., McCarty Jr., J.C., Saha, S., Jenkins, J.N., Hayes, R.W. 2009. Genetic Changes in Plant Growth and their Associations with Chromosomes from Gossypium hirsutum L. in G. hirsutum L. Genetica. 137:56-66.Testing variance components by two jackknife methods

- (Proceedings)Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2009. Testing variance components by two jackknife methods. In: Applied Statistics In Agriculture Conference Proceedings, April 27-29, 2008, Manhattan, KS. pp. 1-17.Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Saha, S., Jenkins, J.N., Buriev, Z.T., Shermatov, S.E., Scheffler, B.E., Pepper, A.E., Yu, J., Kohel, R.J., Abdukarimov, A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica. 136:401-417.Efficacy of Cry1F insecticidal protein in maize and cotton for control of fall armyworm (Lepidoptera: Noctuidae)

- (Peer Reviewed Journal)Siebert, W.M., Babcock, J.M., Nolting, S., Santos, A.C., Adamczyk Jr, J.J., Neese, P.A., King, J.E., Jenkins, J.N., Lorenz, G.M., Fromme, D.D., Lassiter, R.B. 2008. Efficacy of Cry1F insecticidal protein in maize and cotton for control of fall armyworm (Lepidoptera: Noctuidae). Florida Entomologist. 91(4):555-565.Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance

- (Abstract Only)Wubben, M., Callahan, F.E., Scheffler, B.E., Jenkins, J.N. 2009. Transcript analysis of sedentary female reniform nematodes identifies potential targets ofr RNAi-mediated resistance [abstract]. National Cotton Council Beltwide Cotton Conference. p. 179.Methods of analysis for georeferenced sample counts of tarnished plant bugs in cotton

- (Peer Reviewed Journal)Willers, J.L., Jenkins, J.N., McKinion, J.M., Gerard, P., Hood, K.B., Bassie, J.R., Cauthen, M.D. 2009. Methods of analysis for georeferenced sample counts of tarnished plant bugs in cotton. Precision Agriculture. 10:189-212.Genetic detection of node of first fruiting branch in crosses of a cultivar with two exotic accessions of Upland cotton

- (Peer Reviewed Journal)Guo, Y., McCarty Jr., J.C., Jenkins, J.N., An, C., Saha, S. 2009. Genetic detection of node of first fruiting branch in crosses of a cultivar with two exotic accessions of upland cotton. Euphytica. 166:317-329.Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Kohel, R.J., Yu, J., Pepper, A.E., Abdullaev, A.A., Kushanov, F.N., Salakhutdinov, I.B., Buriev, Z.T., Saha, S., Scheffler, B.E., Jenkins, J.N., Abdukarimov, A. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics. 92:478-487.Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton

- (Peer Reviewed Journal)Wu, J., Gutierrez, O. A., Jenkins, J.N., McCarty Jr., J.C., Zhu, J. 2009. Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton. Euphytica. 165:231-245.Registration of RMUP-C5, a random mated population of Upland cotton germplasm

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Bowman, D.T., Watson, C.E., Jones, D.C. 2008. Registration of RMUP-C5, a random mated population of Upland cotton germplasm. Journal of Plant Registrations. 2:239-242.Constructing molecular linkage maps of chromosome 14sh and 22 sh and QTL mapping for major traits by use of substitution lines of Gossypium hirsutum L.

- (Abstract Only)Luan, M., Guo, X., Zhang, Y., Yao, J., Saha, S., Jenkins, J.N. 2008. Constructing molecular linkage map and chromosome 14sh and 33sh and QTL mapping for major traits by use of substitution lines of Gossypium hirsutum L. Cotton Science. 20(S):85.Interspecific chromosome substitution lines as genetic resources for improvement, trait analysis and genomic inference

- (Abstract Only)Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Interspecific chromosome substitution lines as genetic resources for improvement, trait analysis and genomic inference [abstract]. Cotton Science. 20(S):84.Chromosome substitution lines:  useful genomic resources in cotton

- (Abstract Only)Saha, S., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Chromosome substitution lines:  useful genomic resources in cotton [abstract]. Cotton Science. 20(S):111.A novel allele of Li-2 producing different types of fibers in cotton seeds in different branches of the same plant

- (Abstract Only)An, C., Jenkins, J.N., Saha, S., McCarty Jr., J.C. 2008. A novel allele of Li-2 producing different types of fibers in cotton seeds in different branches of the same plant [abstract]. Agronomy Abstracts. CD-ROM.Enhancement and diversity of primitive cotton, Gossypium hirsutum L., accessions

- (Proceedings)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2008. Enhancement and diversity of primitive cotton, Gossypium hirsutum L., accessions.  In Proceedings 18th EUCARPIA General Congress - Modern Vareity Breeding for Present and Future Needs, Septembeer 9-12, 2008, Valencia, Spain. p. 185-189.Interspecific chromosome substitution lines in the genetic improvement of Upland cotton

- (Abstract Only)Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Stelly, D.M. 2008. Interspecific chromosome substitution lines in the genetic improvement of Upland cotton. Agronomy Abstracts. Paper No. 718-8.A post-processing step error correction algorithm for overlapping LiDAR strips from agricultural landscapes

- (Peer Reviewed Journal)Willers, J.L., Jin, M., Eksioglu, B., Zusmanis, A., O'Hara, C., Jenkins, J.N. 2008. A post-processing step error correction algorithm for overlapping LiDAR strips from agricultural landscapes. Computers and Electronics in Agriculture. 64:183-193.Genetic analysis of agronomic and fiber traits using four interspecific chromosome substitution lines

- (Peer Reviewed Journal)Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Stelly, D.M. 2008. Genetic analysis of agronomic and fiber traits using four interspecific chromosome substitution lines in cotton. Plant Breeding. 127:612-618.Genetic association of lint yield with its components in cotton chromosome substitution lines

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Percy, R.G. 2008. Genetic association of lint yield with its components in cotton chromosome substitution lines. Euphytica. 164:199-207.Towards a genome sequence for reniform nematode (Rotylenchulus reniformis)

- (Abstract Only)Bartlett, B.D., Shan, X., Wubben, M., Jenkins, J.N., Peterson, D.G. 2008. Towards a genome sequence for reniform nematode (Rotylenchulus reniformis) [abstract]. Proceedings Tougaloo College-Mississippi College 5th Undergraduate Research Symposium, April 18, 2008, Tougaloo, MS.Chemical, physical and biological properties of a marginal soil as influenced by tillage and broiler litter application

- (Abstract Only)Adeli, A., Dabney, S.M., Brooks, J.P., Jenkins, J.N. 2008. Chemical, physical and biological properties of a marginal soil as influenced by tillage and broiler litter application [abstract]. Agronomy Abstracts. Paper No. 693-16.Molecular characterization and temporal expression analyses indicate the MIC (Meloidogyne Induced Cotton) gene family represents a novel group of root-specific defense-related genes in Upland cotton (Gossypium hirsutum L.)

- (Peer Reviewed Journal)Wubben, M., Callahan, F.E., Hayes, R.W., Jenkins, J.N. 2008. Molecular characterization and temporal expression analyses indicate that the MIC (Meloidogyne Induced Cotton) gene family represents a novel group of root-specific defense-related genes in upland cotton (Gossypium hirsutum L.). Planta. 228:111-123.Assessing the risks to water bodies from nitrogen vs. phosphorus based broiler litter strategy

- (Abstract Only)Adeli, A., Brooks, J.P., Jenkins, J.N. 2008. Assessing the risks to water bodies from nitrogen vs. phosphorus based broiler litter strategy [abstract]. Mississippi 38th Water Resources Conference Proceedings. p. 53.Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylo-genomic characterization, chromosome localization and linkage mapping

- (Peer Reviewed Journal)An, C., Saha, S., Jenkins, J.N., Ma, D., Scheffler, B.E., Kohel, R.J., Yu, J., Stelly, D.M. 2008. Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylogenomic characterization, chromosome localization and linkage mapping. Theoretical and Applied Genetics. 161:1015-1026.Evaluation of cotton chromosome substitution lines crossed with high fiber strength lines

- (Abstract Only)Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2008. Evaluation of cotton chromosome substitution lines crossed with high fiber strength lines [abstract]. National Cotton Council Beltwide Cotton Conference. p. 904.Chromosome substitution lines (CS-B) revealed the presence of cryptic beneficial alleles in G. barbadense with potential to increase lint and seedcotton yield in Upland cotton

- (Abstract Only)Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2008. Chromosome substitution lines (CS-B) revealed the presence of cryptic beneficial alleles in G. barbadense with potential to increase lint and seed cotton yield in Upland cotton [abstract]. National Cotton Council Beltwide Cotton Conference. p. 831.Identification of differentially expressed genes associated with cotton fiber development in a chromosomal substitution line (CS-B22sh)

- (Peer Reviewed Journal)Wu, Z., Soliman, K.M., Bolton, J.J., Saha, S., Jenkins, J.N. 2008. Identification of differentially expressed genes associated with cotton fiber development in a chromosomal substitution line (CS-B22sh). Genomics. 8:166-174.BAC-DERIVED SSR CHROMOSOME LOCATIONS IN COTTON

- (Peer Reviewed Journal)Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Scheffler, B.E., Stelly, D.M. 2008. BAC-derived SSR chromosome locations in cotton. Euphytica. 161:361-370.Lessons Learned and Challenges Ahead for Cotton Genome Mapping.

- (Proceedings)Ulloa, M., Saha, S., Yu, J., Jenkins, J.N., Meredith Jr, W.R., Kohel, R.J. 2008. Lessons Learned and Challenges Ahead for Cotton Genome Mapping. World Cotton Res. Conf. (Proc) paper no. 1798.QTL for node of first fruiting branch in a cross of an Upland cotton, Gossypium hirsutum L., cultivar with primitive accession Texas 701

- (Peer Reviewed Journal)Guo, Y., McCarty Jr., J.C., Jenkins, J.N., Saha, S. 2008. QTLs for node of first fruiting branch in a cross of an upland cotton, Gossypium hirsutum L., cultivar with primitive accession Texas 701. Euphytica. 163:113-122.Evaluation of cotton populations for agronomic and fiber traits after different cycles of random mating

- (Experiment Station)McCarty Jr., J.C., Jenkins, J.N., Wu, J., Gutierrez, O.A., Hayes, R.W. 2008. Evaluation of cotton populations for agronomic and fiber traits after different cycles of random mating. Mississippi Agricultural and Forestry Experiment Station Bulletin 1168. 16 p.DEFINING THE EXPERIMENTAL UNIT FOR THE DESIGN AND ANALYSIS OF SITE-SPECIFIC EXPERIMENTS IN COMMERCIAL COTTON FIELDS

- (Peer Reviewed Journal)Willers, J.L., Milliken, G.A., Jenkins, J. N., O'Hara, C.G., Gerard, P.D., Reynolds, D.B., Boykin, D.L., Good, P.V., Hood, K.B. 2008. Defining the experimental unit for the design and analysis of site-specific experiments in commercial cotton fields. Agricultural Systems. 96:237-249.Genetic associations of cotton yield with its component traits in derived primitive accessions crossed by elite Upland cultivars using the conditional ADAA genetic model

- (Peer Reviewed Journal)McCarty Jr., J.C., Wu, J., Jenkins, J.N. 2008. Genetic association of cotton yield with its component traits in derived primitive accessions crossed by elite Upland cultivars using the conditional ADAA genetic model. Euphytica. 161:337-352.Association of seed traits with specific Pima 3-79 chromosomes in a TM-1 background

- (Abstract Only)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Thaxton, P. 2007. Association of seed traits with specific Pima 3-79 chromosomes in a TM-1 background. Agronomy Abstracts. CD-ROM.Development of Reniform Nematode Resistance in Upland Cotton

- (Review Article)Robinson, A.F., Augudelo, P., Avila, C.A., Bell, A.A., Callahan, F.E., Cook, C.G., Dighe, N.D., Gutierrez, O.A., Hayes, R.W., Jenkins, J.N., Johnson, J.T., Kantety, R., Lawrence, G.W., Lawrence, K.S., Mangineni, L., Mccarty, J.C., Menz, M.A., Meredith, W.A., Nichols, R.L., Robbins, R.T., Sacks, E., Scheffler, B., Sciumbato, G.L., Smith, C.W., Starr, J.L., Stelly, D.M., Stetina, S.R., Stewart, J.M., Thaxton, P.M., Wallace, T.P., Weaver, D.B., Wubben, M.J., Young, L.D. 2008.  Development of reniform nematode resistance in Upland cotton. In: Proceedings of the World Cotton Research Conference-4, September 10-14, 2007, Lubbock, Texas. 2008 CDROM.Transcriptome profiling, sequence characterization, and assignment to chromosomes of SNP markers for EXPANSIN genes in cotton

- (Peer Reviewed Journal)An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Wilkins, T.A., Stelly, D.M. 2007. Transcriptome profiling, sequence characterization, and  SNP-based chromosomal assignment of the EXPANSIN genes in cotton. Molecular Genetics and Genomics. 278:539-553.Molecular and SNP characterization of two genome specific transcription factor genes GhMyb8 and GhMyb10 in cotton species

- (Peer Reviewed Journal)Hsu, C., An, C., Saha, S., Ma, D., Jenkins, J.N., Scheffler, B.E., Stelly, D. 2008. Molecular and SNP characterization of two genome specific transcription factor genes GhMyb8 and GhMyb10 in cotton species. Euphytica. 159:259-273.Notice of release of RMUP-C5, a random mated population of Upland cotton germplasm

- (Germplasm Release)Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Hayes, R.W., Bowman, D.T., Watson, C.E., Jones, D. 2007. Notice of release of RMUP-C5, a random mated population of Upland cotton germplasm. USDA, Mississippi Agricultural and Forestry Experiment Station, North Carolina Agricultural Research Service, and Cotton, Inc. Germplasm Release. 4/30/07.  6 p.GENETIC EFFECTS OF THIRTEEN GOSSYPIUM BARBADENSE L. CHROMOSOME SUBSTITUTION LINES IN TOPCROSSES WITH UPLAND COTTON CULTIVARS:  II. FIBER QUALITY TRAITS

- (Peer Reviewed Journal)Jenkins, J.N., McCarty Jr., J.C., Wu, J., Saha, S., Gutierrez, O.A., Hayes, R.W., Stelly, D.M. 2007. Genetic effects of thirteen Gossypium barbadense L. chromosome substitution lines in topcrosses with upland cotton cultivars:  II. Fiber quality traits. Crop Science. 47:561-572.Registration of MS-01RKN, MS-24RKN, MS-30RKN, MS-33RKN, MS-35RKN and MS-37RKN cotton germplasm lines with resistance to root-knot nematode

- (Peer Reviewed Journal)Creech, R.G., Jenkins, J.N., McCarty Jr., J.C., Hayes, R.W., Creech, J.B., Haire, D., Cantrell, R. 2007. Registration of MS-01RKN, MS-24RKN, MS-30RKN, MS-33RKN, MS-35RKN and MS-37RKN cotton germplasm lines with resistance to root-knot nematode. Journal of Plant Registrations. 1:147-148.MICROSATELLITE MARKERS ASSOCIATED WITH COTTON FIBER DEVELOPMENT

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Buriev, Z.T., Saha, S., Pepper, A.E., Musaev, J.A., Almatov, A., Shermatov, S.E., Kushanov, F.N., Mavlonov, G.T., Reddy, U.K., Yu, J., Jenkins, J.N., Kohel, R.J., Abdukarimov, A. 2007. Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum. Euphytica. 156:141-156.Development and release of C5 breeding populations of cotton developed through random mating

- (Abstract Only)Gutierrez, O., Jenkins, J.N., McCarty Jr., J.C., Bowman, D.T., Watson, C.E., Jones, D.C., Cantrell, R. 2007. Development and release of C5 breeding populations of cotton developed through random mating [abstract]. National Cotton Council Beltwide Cotton Conference. p. 639.Determination of chromosome effects for cotton cultivars crossed with chromosome substitution lines and TM-1

- (Abstract Only)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Wallace, T. 2007. Determination of chromosome effects for cotton cultivars crossed with chromosome substitution lines and TM-1 [abstract]. National Cotton Council Beltwide Cotton Conference. p. 2115.The R2R3-Myb transcription fators of cotton:  SNP characterization, chromosomal assignment, and phylogenetic analysis

- (Abstract Only)An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Ma, D-P., Stelly, D.M. 2007. MYB genes, a family of transcription fators:  SNPS characterization, chromosomal location, and phylogenetic analysis [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1620.Association of flowering time genes with simple sequence repeat markers in a primitive cotton accession (Gossypium hirsutum L.)

- (Abstract Only)Guo, Y., MCcarty Jr., J.C., Jenkins, J.N., Saha, S., Wu, J. 2007. QTL analyses of flowering time in a primitive cotton accession (Gossypium hirsutum L.)[Abstract]. National Cotton Council Beltwide Cotton Conference. p. 231.Wide area wireless network (WAWN) for supporting precision agriculture

- (Proceedings)Mckinion, J.M., Willers, J.L., Jenkins, J.N. 2007. Wide area wireless network (WAWN) for supporting precision agriculture. National Cotton Council Beltwide Cotton Conference. p. 946-952.Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton

- (Abstract Only)Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Abdullaev, A., Shermatov, S., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2007. Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W199.USE OF PRIMITIVE DERIVED COTTON ACCESSIONS FOR AGRONOMIC AND FIBER TRAITS IMPROVEMENT: VARIANCE COMPONENTS AND GENETIC EFFECTS

- (Peer Reviewed Journal)McCarty Jr., J.C., Wu, J., Jenkins, J.N. 2007. Use of primitive derived cotton accessions for agronomic and fiber traits improvement: Variance components and genetic effects. Crop Science. 47:100-110.THE ROLE OF INDUCED MUTAGENESIS IN CONVERSION OF PHOTOPERIOD DEPENDENCE IN COTTON:  HOMOGENIZING EFFECT OF INDUCED MUTAGENESIS

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Kushanov, F., Djaniqulov, F., Buriev, Z., Pepper, A.E., Fayzieva, N., Mavlonov, G., Saha, S., Jenkins, J.N., Abdukarimov, A. 2007. The role of induced mutation in conversion of photoperiod dependence in cotton. Journal of Heredity. 98:258-266.EVIDENCE OF CLUSTERING FOR THE MIC-3 ROOT-SPECIFIC GENE FAMILY ASSOCIATED WITH NEMATODE RESISTANCE IN GOSSYPIUM SPP.

- (Abstract Only)Buriev, Z., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abukarimov, A., Scheffler, B.E., Stelly, D.M., Wubben, M. 2006. Evidence of clustering for the mic-3 root-specific gene family associated with nematode resistance in gossypium spp [abstract]. American Society of Agronomy Abstracts. CDROM.Notice of release of six root-knot nematode resistant upland cotton germplasm lines

- (Germplasm Release)Jenkins, J.N., MCcarty Jr., J.C., Hayes, R.W., Creech, R.G., Creech, J.B., Haire, D.L. 2006. Notice of release of six root-knot nematode resistant upland cotton germplasm lines. USDA and Mississippi Agricultural and Forestry Experiment Station Germplasm Release. 11/14/2006.  3 p.INTERSPECIFIC CHROMOSOME SUBSTITUTION LINES IN UPLAND COTTON IMPROVEMENT

- (Abstract Only)Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Stelly, D.M. 2006. Interspecific chromosome substitution lines in upland cotton improvement. International Cotton Genome Initiative Workshop. p. 11.SITE-SPECIFIC APPROACHES TO COTTON INSECT CONTROL.  PART 1.  STATISTICAL CONCEPTS, SAMPLING, AND ANALYSIS TECHNIQUES

- (Peer Reviewed Journal)Willers, J.L., Jenkins, J.N., Ladner, W.L,  Gerard, P.D., Boykin, D.L., Hood, K.B., McKibben, P.L., Samson, S.A., Bethel, M.M. 2005. Site-specific approaches to cotton insect control. Sampling, and remote sensing analyses techniques. Precision Agriculture. 6:431-452.A STRATEGY FOR DEVELOPING SNP MARKERS FOR THE MIC-3 ROOT-SPECIFIC GENE FAMILY ASSOCIATED WITH NEMATODE RESISTANCE IN GOSSYPIUM SPP.

- (Abstract Only)Buriev, Z., Saha, S., Abdurakhmonov, I.Y., Jenkins, J.N., Abdukarimov, A., Scheffler, B.E., Stelly, D.M., Wubben, M. 2006. A strategy for developing snp markers for the mic-3 root-specific gene family associated with nematode resistance in gossypium spp. [abstract]. Proceedings International Cotton Genome Initiative Conference. Available: http:\\cgi.tamu.edu\pds\icgi06-abs-final.Linkage Disequilibrium Based Association Mapping of Fiber Quality Traits in Cotton Using Diverse Cotton Germplasm from Uzbekistan

- (Abstract Only)Abdurakhomonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Kushanov, F.N., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2006. Linkage disequilibrium based association mapping of fiber quality traits in cotton using diverse cotton germplasm from Uzbekistan [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Structural Genomics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 7.  Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.AFLP MARKER ASSOCIATIONS WITH AGRONOMIC AND FIBER TRAITS IN DAY-NEUTRAL PRIMITIVE ACCESSIONS AND COTTON CULTIVARS

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Zhong, M., Swindle, M. 2007. AFLP marker associations with agronomic and fiber traits in cotton. Euphytica. 153:153-163.ASSOCIATION OF ROOT-KNOT NEMATODE RESISTANCE GENES WITH SSR MARKERS ON TWO CHROMOSOMES IN COTTON

- (Peer Reviewed Journal)Ynturi, P., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Saha, S. 2006. Association of root-knot nematode resistance genes with simple sequence repeat markers on two chromosomes in cotton. Crop Science. 46:2670-2674.BULKED-POLLEN METHODOLOGY FOR THE DEVELOPMENT OF RANDOM MATING POPULATIONS IN COTTON

- (Peer Reviewed Journal)Gutierrez, O.A., Bowman, D.T., Cole, C.B., Jenkins, J.N., McCarty Jr., J.C., Wu, J., Watson, C.E. 2006. Development of random-mated populations using bulked pollen methodology: Cotton as a model. Journal of Cotton Science. 10:175-179.EFFECTS OF CHROMOSOME 5SH FROM GOSSYPIUM HIRSUTUM L. ON FLOWER PRODUCTION IN G. HIRSUTUM L.

- (Peer Reviewed Journal)McCarty Jr., J.C., Wu, J., Saha, S., Jenkins, J.N., Hayes, R.W. 2006. Effects of chromosome 5sh from Gossypium hirsutum L. on flower production in G. hirsutum L. Euphytica. 152:99-107.COMBINING ABILITY OF 13 GOSSYPIUM BARBADENSE L. CHROMOSOMES SUBSTITUTED INTO G. HIRSUTUM L. WHEN TOPCROSSED WITH FIVE DIVERSE CULTIVARS: YIELD AND YIELD COMPONENTS

- (Peer Reviewed Journal)Jenkins, J.N., Wu, J., McCarty Jr., J.C., Saha, S., Gutierrez, O.A., Hayes, R.W., Stelly, D.M. 2006. Genetic effects of thirteen Gossypium hirsutum L. chromosome substitution lines in topcrosses with upland cotton cultivars:  I. Yield and yield components. Crop Science. 46:1169-1178.SEQUENCE ANALYSIS OF SIX A-EXPANSIN GENES IN COTTON

- (Abstract Only)An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Wilkins, T.A. 2006. Chromosomal assignment of six alpha-expansin genes using SNP markers in cotton (Gossypium spp.). Beltwide Cotton Conferences. p. 737.AN INTRASPECIFIC SSR LINKAGE MAP OF COTTON

- (Abstract Only)Gutierrez, O.A., Wu, J., Jenkins, J.N., McCarty, Jr., J.C., Raska, D.A., Stelly, D.M. 2006. An intraspecific SSR linkage map of cotton. National Cotton Council Beltwide Cotton Conference. p. 826.EFFECT OF CHROMOSOME SPECIFIC INTROGRESSION IN UPLAND COTTON ON FIBER AND AGRONOMIC TRAITS

- (Peer Reviewed Journal)Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Gutierrez, O.A., Percy, R.G., Cantrell, R.G., Stelly, D.M. 2006. Effects of chromosome-specific introgression in upland cotton on fiber and agronomic traits. Genetics. 172:1927-1938.GENETIC DIVERSITY FOR AGRONOMIC AND FIBER TRAITS IN DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM ACCESSIONS

- (Peer Reviewed Journal)McCarty, J.C., Wu, J., Jenkins, J.N. 2006. Genetic diversity for agronomic and fiber traits in day-neutral primitive cotton germplasm. Euphytica. 148:283-293.SSR-FACILITATED GOSSYPUM HIRSUTUM L. MARKER LOCALIZATION AND LINKAGE GROUP IDENTIFICATION USING INTERSPECIFIC HYPOANEUPLOID HYBRIDS

- (Abstract Only)Gutierrez, O.A., Saha, S., Jenkins, J.N., MCcarty Jr., J.C., Raska, D.A., Stelly, D.M. 2006. SSR-facilitated Gossypum hirsutum L. marker localization and linkage group identification using interspecific hypoaneuploid hybrids [abstract]. Plant and Animal Genome VX Conference Abstracts. CD-ROM.YIELD AND FIBER QUALITY OF COTTON AS INFLUENCED BY NITROGEN AND POTASSIUM NUTRITION

- (Peer Reviewed Journal)Read, J.J., Reddy, K.R., Jenkins, J.N. 2006. Yield and fiber quality of upland cotton as influenced by nitrogen and potassium nutrition. European Journal of Agronomy. 24:282-290.REMOTE SENSING, SAMPLING AND SIMULATION APPLICATIONS IN ANALYSES OF INSECT DISPERSION AND ABUNDANCE IN COTTON

- (Abstract Only)Willers, J.L., McKinion, J.M., Jenkins, J.N. 2006. Remote sensing, sampling and simulation applications in analyses of insect dispersion and abundance in cotton. USDA Forest Service Proceedings RM RS-P-42. CD-ROM.AN SSR LINKAGE MAP OF UPLAND COTTON, GOSSYPIUM HIRSUTUM L.

- (Abstract Only)Gutierrez, O.A., Wu, J., Jenkins, J.N., McCarty Jr, J.C., Raska, D.A., Stelly, D.M. 2005. An SSR linkage map of upland cotton, Gossypium hirsutum L. [abstract]. Agronomy Abstracts. Abstract No. 48-6.CHARACTERIZAION OF G. HIRSUTUM WILD AND VARIETY ACCESSIONS FROM UZBEK COTTON GERMPLASM COLLECTION FOR MORPHOLOGICAL AND FIBER QUALITY TRAITS AND DATABASE DEVELOPEMENT

- (Proceedings)Abdurakhmonov, I.Y., Buriev, Z.T., Kohel, R.J., Yu, J., Pepper, A.E., Rizaeva, S.M., Abdukarimov, A., Saha, S., Jenkins, J.N. 2006. Characterizaion of G. hirsutum wild and variety accessions from Uzbek cotton germplasm collection for morphological and fiber quality traits and database developement. In: Proceedings of the Beltwide Cotton Conferences, January 3-6, 2006, San Antonio, Texas. 2006 CDROM.MOLECULAR GENETIC DIVERSITY OF G. HIRSUTUM COTTON ACCESSION FROM UZBEK COTTON GERMPLASM REVEALED BY A CORE SET AND CHROMOSOME SPECIFIC MICROSATELLITE MARKERS

- (Abstract Only)Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, T.Z., Shermatov, S., Abdullaev, A., Jenkins, J.N., Abdukarimov, A. 2006. Molecular genetic diversity of G. hirsutum cotton accession from Uzbek cotton germplasm revealed by a core set and chromosome specific microsatellite markers [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P131.A RESURSIVE APPROACH TO DETECT MULTIVARIABLE CONDITIONAL VARIANCE COMPONENTS AND CONDITIONAL RANDOM EFFECTS

- (Peer Reviewed Journal)Wu, J., Wu, D., Jenkins, J.N., McCarty Jr., J.C. 2006. A recursive approach to detect multivariable conditional variance components and conditional random effects. Computational Statistics and Data Analysis. 50:285-300.VARIANCE COMPONENT ESTIMATION USING THE ADAA MODEL WHEN GENOTYPES VARY ACROSS ENVIRONMENTS

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Wu, D. 2006. Variance component estimation using the additive, dominance, and additive x additive model when genotypes vary across environments. Crop Science. 46:174-179.A NEW GENETIC MODEL TO DETERMINE CHROMOSOMAL EFFECTS IN CHROMOSOME SUBSTITUTION LINES AND OTHER GERMPLASMS

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Saha, S., Stelly, D.M. 2006. An additive-dominance model to determine chromosomal effects in chromosome substitution lines and other germplasms. Theoretical and Applied Genetics. 112:391-399.MID-SEASON COTTON YIELD VARIABILITY ESTIMATION WITH REMOTE SENSING

- (Abstract Only)Iqbal, J., Jenkins, J.N., Thomasson, A., McKinion, J.M., Willers, J.L., Whisler, F.D. 2005. Mid-season cotton yield variability estimation with remote sensing. Agronomy Abstracts. 2004 CDROM.FIELD-SCALE MAPPING OF SOIL PROPERTIES USING HYPERSPECTRAL/MULTISPECTRAL AERIAL IMAGERY

- (Abstract Only)Iqbal, J., Jenkins, J.N., Thomasson, A., McKinion, J.M., Willers, J.L., Whisler, F.D. 2005. Field-scale mapping of soil properties using hyperspectral/multispectral aerial imagery. Agronomy Abstracts. 2004 CDROM.Simple sequence repeat marker associated with a natural leaf defoliation trait in tetraploid cotton

- (Peer Reviewed Journal)Abdurakhmonov, I.Y., Abdullaev, A.A., Saha, S., Buriev, Z.T., Arslanov, D., Kuryazov, Mavlonov, G., Rizaeva, S.M., Reddy, U.K., Jenkins, J.N., Abdullaev, A., Abdukarimov, A. 2005. Simple sequence repeat marker associated with a natural leaf defoliation trait in tetraploid cotton. Journal of Heredity. 96:644-653.REGISTRATION OF 17 UPLAND (GOSSYPIUM HIRSUTUM) COTTON GERMLASM LINES DISOMIC FOR DIFFERENT G. BARBADENSE CHROMOSOME OR ARM SUBSTITUTIONS

- (Peer Reviewed Journal)Stelly, D.M., Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A. 2005. Registration of 17 upland (Gossypium hirsutum) cotton germplasm lines disomic for different G. barbadense chromosome or arm substitutions. Crop Science. 45:2663-2665.REGISTRATION OF 14 PRIMITIVE DERIVED COTTON GERMPLASM LINES WITH IMPROVED FIBER STRENGTH

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N. 2005. Registration of 14 primitive derived cotton germplasm lines with improved fiber strength. Crop Science. 45:2668.COMPARISONS OF TWO STATISTICAL MODELS FOR EVALUATING BOLL RETENTION IN COTTON

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Watson, C.E. 2005. Comparisons of two statistical models for evaluating boll retention in cotton. Agronomy Journal. 97:1291-1294.REGISTRATION OF 21 DAY LENGTH-NEUTRAL FLOWERING PRIMITIVE COTTON GERMPLASM LINES

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N. 2005. Registration of 21 day length-neutral flowering primitive cotton germplasm lines. Crop Science. 45:2134.POTENTIAL OF PRIMITIVE ACCESSIONS FOR COTTON IMPROVEMENT

- (Experiment Station)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2005. Potential of primitive accessions for cotton improvement. Mississippi Agricultural and Forestry Experiment Station Technical Bulletin 1141. 22 p.REMOTE SENSING, SAMPLING AND SIMULATION APPLICATIONS IN ANALYSES OF INSECT DISPERSION AND ABUNDANCE IN COTTON

- (Proceedings)Willers, J.L., McKinion, J.M., Jenkins, J.N. 2006. Remote sensing, sampling and simulation applications in analyses of insect dispersion and abundance in cotton. USDA Forest Service Proceedings RMRS-P-42CD. p. 879-885.SPATIAL VARIABILITY OF SOIL PHYSICAL PROPERTIES IN A MISSISSIPPI DELTA FIELD

- (Peer Reviewed Journal)Iqbal, J., Thomasson, J.A., Jenkins, J.N., Owens, P.R., Whisler, F.D. 2005. Spatial variability analysis of soil physical properties of alluvial soils. Soil Science Society of America Journal. 69:1338-1350.EVALUATING AMERICAN AND CHINA COTTON CULTIVARS AND THEIR CROSSES FOR IMPROVEMENT

- (Peer Reviewed Journal)McCarty Jr., J.C., Wu, J., Jenkins, J.N., Guo, X. 2005. Evaluating American and China cotton cultivars and their crosses for improvement. Cotton Science. 17:47-55.IDENTIFICATION AND CHARACTERIZATION OF GENES PUTATIVELY RELATED TO COTTON FIBER QUALITY

- (Peer Reviewed Journal)Wu, Z., Soliman, K.M., Zipf, A., Saha, S., Sharma, G.C., Jenkins, J.N. 2005. Isolation and characterization of genes differentially expressed in fiber of Gossypium barbadense L. Journal of Cotton Science. 9:166-174.SOIL-LANDSCAPE SPATIAL VARIABILITY IMPACT ON NON-IRRIGATED COTTON YIELD

- (Peer Reviewed Journal)Iqbal, J., Read, J.J., Thomasson, A., Jenkins, J.N. 2005. Relationships between soil-landscape and dryland cotton lint yield. Soil Science Society of America Journal. 69:872-882.INFORMATION TECHNOLOGIES AND THE DESIGN AND ANALYSIS OF SITE-SPECIFIC EXPERIMENTS WITHIN COMMERCIAL COTTON FIELDS

- (Proceedings)Willers, J.L., Milliken, G.A., O'Hara, C.G., Jenkins, J.N. 2005. Information technologies and the design and analysis of site-specific experiments within commercial cotton fields. In: Milliken, G.A., editor. Proceedings 16th Kansas State University on Applied Statistics in Agriculture, April 25-27, 2004, Manhattan, Kansas. p. 41-73.INFLUENCE OF FOUR PLANT POPULATIONS ON BOLL RETENTION AND LINT YIELD ON FOUR COMMERCIAL CULTIVARS

- (Abstract Only)Cash, L., Jenkins, J.N., McCarty Jr., J.C. 2005. Influence of four plant populations on boll retention and lint yield on four commercial cultivars [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1019.RESISTANCE TO RENIFORM NEMATODE IN EXOTIC COTTON LINES

- (Abstract Only)Lafoe, J.M., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Robinson, A.F. 2005. Resistance to reniform nematode in exotic cotton lines [abstract]. National Cotton Council Beltwide Cotton Conference. p.1068.EFFECTS OF VIP ON SELECTED COTTON INSECT PESTS IN FIELD AND LABORATORY EXPERIMENTS

- (Abstract Only)Jenkins, J.N., McCarty Jr., J.C. 2005. Effects of VIP on selected cotton insect pests in field and laboratory experiments [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1046.CHROMOSOMAL ASSIGNMENT OF BAC-DERIVED SSR MARKERS IN COTTON (GOSSYPIUM HIRSUTUM L.)

- (Abstract Only)Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Stelly, D.M. 2005. Chromosomal assignment of bac-derived SSR markers in cotton (Gossypium hirsutum L.) [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1067.MIXED MODEL BASED CONDITIONAL ANALYSIS FOR COMPLEX TRAITS

- (Abstract Only)Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Mixed model based conditional analysis for complex traits [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1010.DETECTION OF RENIFORM NEMATODE RESISTANCE IN PRIMITIVE GOSSYPIUM HIRSUTUM AND G. BARBADENSE DURING A SURVEY OF THE U.S. NATIONAL COTTON COLLECTION AND INITIATION OF RESEARCH TO INCORPORATE RESISTANCE INTO AGRONOMIC COTTON

- (Abstract Only)Robinson, A.F., Bridges, A.C., Percival, A.E., Gutierrez, O.A., LaFoe, J.M., McCarty, Jr., J.C., Jenkins, J.N. 2005. Detection of reniform nematode resistance in primitive Gossypium hirsutum and G. barbadense during a survey of the U.S. National Cotton Collection and initiation of research to incorporate resistance into agronomic cotton [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.GROWTH AND FRUITING HABITS OF DP 555 BG/RR IN VARIOUS ROW PATTERNS AND PLANT SPACINGS

- (Abstract Only)Miller, H.T., Jenkins, J.N., McCarty Jr., J.C. 2005. Growth and fruiting habits of DP 555 BG/RR in various row patterns and plant spacings [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1001.DEVELOPMENT OF BREEDING POPULATIONS IN COTTON THROUGH RANDOM MATING

- (Abstract Only)Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Bowman, D.T., Watson, C.E. 2005. Development of breeding populations in cotton through random mating [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1000.A NEW METHOD FOR CONSTRUCTING LINKAGE MAPS FOR ORGANISMS WITH ACHIASMATIC GAMETOGENESIS

- (Peer Reviewed Journal)Wu, J., Zhu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Constructing linkage maps with achiasmatic gametogenesis. Acta Genetica Sinica. 32:608-615.MOLECULAR AND CYTOLOGICAL CHARACTERIZATION OF A CYTOPLASMIC-SPECIFIC MUTANT IN PIMA COTTON (GOSSYPIUM BARBADENSE L.)

- (Peer Reviewed Journal)Karaca, M., Saha, S., Callahan, F.E., Jenkins, J.N., Read, J.J., Percy, R.G. 2004. Molecular and cytological characterization of a cytoplasmic-specific mutant in pima cotton (Gossypium barbadense L.). Euphytica. 139:187-197.PRIMITIVE COTTON GERMPLASM:  YIELD AND FIBER TRAITS FOR TWENTY-ONE DAY-NEUTRAL ACCESSIONS

- (Experiment Station)McCarty Jr., J.C., Jenkins, J.N. 2004. Primitive cotton germplasm:  yield and fiber traits for twenty-one day-neutral accessions. Mississippi Agricultural and Forestry Experiment Station Research Report 23(14). 6 p.ASSOCIATION OF AGRONOMIC AND FIBER TRAITS WITH SPECIFIC 3-79 (GOSSYPIUM BARBADENSE) CHROMOSOMES IN A TM-1 (G. HIRSUTUM) BACKGROUND

- (Peer Reviewed Journal)Saha, S., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Stelly, D.M., Percy, R.G., Raska, D.A. 2004. Effect of chromosome substitutions from Gossypium hirsutum L. 3-79 into G. hirsutum L. TM-1 on agronomic and fiber traits. Journal of Crop Science. 8:162-169.CYTOGENETIC RESOURCES IN DISSECTING COMPLEX QTLS AND ENHANCING GERMPLASM IN UPLAND COTTON

- (Abstract Only)Saha, S., Jenkins, J.N., Wu, J., McCarty Jr., J.C., Percy, R.G., Cantrell, R.G., Stelly, D.M. 2004. Cytogenetic resources in dissecting complex QTLs and enhancing germplasm in upland cotton. International Cotton Genome Initiative ICG-2004 Workshop Proceedings. p. 81.USE OF PRIMITIVE ACCESSIONS IN COTTON IMPROVEMENT

- (Proceedings)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Use of primitive accessions in cotton improvement. In: Fischer, T., editor. Proceedings 4th International Crop Science Congress, September 26-October 1, 2004, Brisbane, Australia. 2004 CDROM.CHROMOSOME SUBSTITUTION LINES FROM GOSSYPIUM BARBADENSE L. AS SOURCES FOR G HIRSUTUM L. IMPROVEMENT

- (Proceedings)Jenkins, J.N., McCarty Jr., J.C., Wu, J., Saha, S., Stelly, D. Chromosome substitution lines from Gossypium barbadense L. as sources for G. hirsutum L. improvement. In: Fisher, T., editor. Proceedings 4th International Crop Science Congress, September 26-October 1, 2004, Brisbane, Australia. 2004 CDROM.Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap.

- (Peer Reviewed Journal)Ulloa, M., Saha, S., Jenkins, J.N., Meredith, Jr., W.R., McCarty, Jr., J.C., Stelly, D.M. 2005. Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. Journal of Heredity. 96(2):132-144.GENETIC ASSOCIATION OF YIELD WITH ITS COMPONENT TRAITS IN A RECOMBINANT INBRED POPULATION OF COTTON

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., McCarty Jr., J.C., Zhu, J. 2004. Genetic association of yield with its component traits in a recombinant inbred population of cotton. Euphytica. 149:171-179.WIRELESS LOCAL AREA NETWORKING FOR FARM OPERATIONS AND FARM MANAGEMENT

- (Proceedings)McKinion, J.M., Willers, J.L., Jenkins, J.N. 2004. Wireless local area networking for farm operations and farm management. In: Proceedings Agricultural Society of Agricultural Engineers Annual International Meeting, August 1-4, 2004, Ottawa, Ontario, Canada. Paper No. 043012. 2004 CDROM.NOTICE OF RELEASE OF 14 UPLAND COTTON, GOSSYPIUM HIRSUTUM L., PRIMITIVE DERIVED GERMPLASM LINES WITH IMPROVED FIBER STRENGTH

- (Germplasm Release)McCarty Jr., J.C., Jenkins, J.N. 2004. Notice of release of 14 upland cotton, Gossypium hirsutum L., primitive derived germplasm lines with improved fiber strength. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station. 7/29/04.COMPARISON OF MIC-3 PROTEIN EXPRESSION IN RESPONSE TO RKN INFECTION IN COTTON LINES DISPLAYING A RANGE OF RESISTANCE LEVELS

- (Peer Reviewed Journal)Callahan, F.E., Zhang, X., Ma, D., Jenkins, J.N., Hayes, R.W., Tucker, M.L. 2004. Comparison of MIC-3 protein accummlation in response to root-knot nematode infection in cotton lines displaying a range of resistance levels. Journal of Cotton Science. 8:186-190.DISTRIBUTION OF BOLL NUMBER AND LINT YIELD BY TIME AND POSITION IN UPLAND COTTON CULTIVARS

- (Proceedings)Wu, J., Jenkins, J.N., McCarty Jr., J.C. 2005. Distribution of boll number and lint yield by time and position in upland cotton cultivars. Applied Statistics In Agriculture Conference Proceedings. p. 296-309.CHROMOSOME SUBSTITUTION LINES:  IMPORTANT GENOMIC RESOURCES IN COTTON

- (Abstract Only)Saha, S., Jenkins, J.N., McCarty, Jr., J.C., Wu, J., Gutierrez, O.A., Cantrell, R.G., Percy, R.G., Stelly, D.M. 2004. Chromosome substitution lines: important genomic resources in cotton. Biotechnology Symposium Proceedings, Alabama A&M University. CD-ROM.NOTICE OF RELEASE OF 17 GERMPLASM LINES OF UPLAND (GOSSYPIUM HIRSUTUM) COTTON, EACH WITH A DIFFERENT PAIR OF G. BARBADENSE CHROMOSOMES OR ARMS SUBSTITUTED FOR THE RESPECTIVE G. HIRSUTUM CHROMOSOMES OR ARMS

- (Germplasm Release)Stelly, D.M., Raska, W., Jenkins, J.N., McCarty, J.C., Gutierrez, O.A. Notice of release of 17 germplasm lines of upland (Gossypium hirsutum) cotton, each with a different pair of G. barbadense chromosomes or arms substituted for the respective G. hirsutum chromosomes or arms. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station, 5/04/04.EST-SSR:  A NEW CLASS OF GENETIC MARKERS IN COTTON

- (Peer Reviewed Journal)Qureshi, S.N., Saha, S., Kantety, R.V., Jenkins, J.N. 2004. EST-SSR: A new class of genetic markers in cotton. Journal of Cotton Science. 8:112-123.WIRELESS LOCAL AREA NETWORKS AND HIGH SPEED INTERNET ACCESS VIA SATELLITE FOR PRECISION AGRICULTURE

- (Peer Reviewed Journal)McKinion, J.M., Turner, S.B., Willers, J.L., Read, J.J., Jenkins, J.N., McDade, J. 2004. Wireless technology and satellite internet access for high-speed whole farm connectivity in precision agriculture. Agricultural Systems. 81:201-212.INHERITANCE OF ROOT-KNOT NEMATODE RESISTANCE IN M-315 RNR AND M78-RNR COTTON

- (Peer Reviewed Journal)McPherson, M.G., Jenkins, J.N., Watson, C.E., McCarty Jr., J.C. 2004. Inheritance of root-knot nematode resistance in M-315 RNR and M78-RNR cotton. Journal of Cotton Science. 8:154-161.NOTICE OF RELEASE OF 21 BC4F4 NONCOMMERCIAL FLOWERING DAY NEUTRAL GERMPLASM LINES OF UPLAND COTTON INVOLVING GOSSYPIUM HIRSUTUM L. RACE ACCESSIONS

- (Germplasm Release)McCarty Jr., J.C., Jenkins, J.N. 2004. Notice of release of 21 Bc4f4 noncommercial flowering day neutral germplasm lines of upland cotton involving Gossypium hirsutum L. race accessions. Germplasm Release. Official Release of USDA, ARS and Mississippi Agricultural and Forestry Experiment Station, 3/22/04.A RECOMBINANT INBRED POPULATION OF COTTON FOR QTL AND DNA MARKER ASSOCIATION

- (Abstract Only)Jenkins, J.N., Wu, J., McCarty Jr, J.C., Reddy, U., Zhu, J. 2004. A recombinant inbred population of cotton for QTL and DNA marker association. World Cotton Research Conference Proceedings. p. 352.CHROMOSOME-SPECIFIC RESOURCES FOR GERMPLASM INTROGRESSION AND GENOMICS IN GOSSYPIUM

- (Abstract Only)Stelly, D.M., Saha, S., Raskal, D.A., Wu, J., Jenkins, J.N., McCarty Jr., J.C., Gutierrez, O.A., Percy, R.G., Gardunial, B., Dighel, N. 2004. Chromosome-specific resources for germplasm introgression and genomics in Gossypium [abstract]. Plant and Animal Genomes XII Conference Proceedings. Paper no. W187.GROWTH AND FRUITING HABITS OF DP 555 BG/RR IN VARIOUS ROW PATTERNS AND PLANT SPACINGS

- (Abstract Only)Miller, H.T., Jenkins, J.N., McCarty Jr, J.C. 2004. Growth and fruiting habits of DP 555 BG/RR in various row patterns and plant spacings [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1117.SEGREGATION FOR ROOT-KNOT NEMATODE RESISTANCE GENE(S)IN F2 POPULATIONS FROM RESISTANT X SUSCEPTIBLE CROSSES

- (Abstract Only)Ynturi, P., Jenkins, J.N., McCarty Jr, J.C., Saha, S. 2004. Segregation for root-knot nematode resistance gene(s)in F2 populations from resistant x susceptible crosses [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1112.COMPARING TWO METHODS IN EVALUATION OF BOLL RETENTION

- (Abstract Only)Wu, J., Jenkins, J.N., McCarty Jr, J.C. 2004. Comparing two methods in evaluation of boll retentionm [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1118.GENETIC DISTANCE AMONG COTTON CULTIVARS USED IN THE DEVELOPMENT OF RANDOM MATING POPULATIONS BASED ON SSR MARKERS AND COEFFICIENT OF PARENTAGE

- (Abstract Only)Gutierrez, O.A., Jenkins, J.N., McCarty Jr, J.C., Bowman, D.T., Watson, C.E. 2004. Genetic distance among cotton cultivars used in the development of random mating populations based on SSR markers and coefficient of parentage [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1061.NOTICE OF RELEASE OF FOURTEEN GERMPLASM LINES OF COTTON WHICH HAVE ONE PAIR OF CHROMOSOMES OR ARMS FROM G. BARBADENSE SUBSTITUTED FOR THE RESPECTIVE G. HIRSUTUM CHROMOSOME OR ARM

- (Abstract Only)Stelly, D.M., Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr, J.C., Gutierrez, O.A. 2004. Notice of release of 17 germplasm lines of upland (Gossypium hirsutum), each with a different pair of G. barbadense chromosomes or arms substituted for the respective G. hirsutum chromosomes or arms. Proceedings National Cotton Council Beltwide Cotton Conference. p. 1205-1207.PRIMITIVE ACCESSION GERMPLASM BY CULTIVAR CROSSES AS SOURCES FOR COTTON IMPROVEMENT I:  PHENOTYPIC VALUES AND VARIANCE COMPONENTS

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: I.  Phenotypic values and variance components. Crop Science. 44:1226-1230.PRIMITIVE ACCESSION GERMPLASM BY CULTIVAR CROSSES AS SOURCES FOR COTTON IMPROVEMENT II:  GENETIC EFFECTS AND GENOTYPIC VALUES

- (Peer Reviewed Journal)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004.  Primitive accession derived germplasm by cultivar crosses as sources for cotton improvement: II. Genetic effects and genotypic values. Crop Science. 44:1231-1235.SSR MARKER(S) ASSOCIATED WITH ROOT-KNOT NEMATODE RESISTANCE GENE(S) IN COTTON

- (Peer Reviewed Journal)Bezawada, C., Saha, S., Jenkins, J.N., Creech, R.C., McCarty, J.C. 2003. SSR marker(s) associated with root-knot nematode resistance gene(s) in cotton. Journal of Cotton Science. 7:179-184.REMOTE SENSING IN DRYLAND COTTON:  RELATIONSHIP TO YIELD POTENTIAL AND SOIL PROPERTIES

- (Proceedings)Read, J.J., Iqbal, J., Thomasson, J.A., Willers, J.L., Jenkins, J.N. 2003. Remote sensing in dryland cotton:  relationship to yield potential and soil properties. Proceedings Ecosystems Dynamics, Agricultural Remote Sensing and Modeling, and Site-Specific Agriculture. 5153:61-72.SPATIAL VALIDATION OF COTTON SIMULATION MODEL IN RELATION TO SOILS AND MULTISPECTRAL IMAGERY

- (Abstract Only)Igbal, J., Whisler, F.D., Read, J.J., Thomasson, A., Jenkins, J.N. 2003. Spatial validation of cotton simulation model in relation to soils and multispectral imagery [abstract]. Proceedings of Ecosystems Dynamics, Agricultural Remote Sensing and Modeling, and Site Specific Agriculture. 5153:200-207.FIELD-SCALE MAPPING OF SOIL PHYSICAL AND CHEMICAL PROPERTIES USING HYPERSPECTRAL/MULTISPECTRAL IMAGE DATA

- (Abstract Only)Iqbal, J., Whisler, F.D., Thomasson, J.A., Read, J.J., Jenkins, J.N. 2003. Field-scale mapping of soil physical and chemical properties using hyperspectral/multispectral image data [abstract]. Agronomy Abstracts. CD-ROM.HIGH SPEED WIRELESS LOCAL AREA NETWORKING FOR FARM APPLICATIONS

- (Proceedings)Mckinion, J.M., Willers, J.L., Turner, S.B., Read, J.J., Jenkins, J.N. 2003. High speed wireless local area networking for farm applications. American Society of Agricultural Engineers Meetings Papers. #033057, p. 1-25.GENETICALLY ENGINEERED CROPS WITH RESISTANCE TO INSECTS

- (Book / Chapter)Jenkins, J.N. 2004. Genetically engineered crops with resistance to insects. In: Encyclopedia of Plant and Crop Science. New York, NY: Marcel Dekker. p. 506-508.GENETICS AND COMBINING ABILITY OF YIELD AND FIBER PROPERTIES OF SELECTED   AMERICAN AND AUSTRALIAN COTTON GENOTYPES: I. GENETIC VARIANCE AND          COMBINING ABILITY

- (Peer Reviewed Journal)CHEATHAM, C.L., JENKINS, J.N., MCCARTY JR, J.C., WATSON, C.E., WU, J. GENETICS VARIANCES AND COMBINING ABILITY OF CROSSES AND AMERICAN CULTIVARS, AUSTRALIAN CULTIVARS, AND WILD COTTONS. JOURNAL OF COTTON SCIENCE. 2003. V.7.P.16-22.COMPARISONS OF QUANTITATIVE TRAIT LOCUS MAPPING PROPERTIES BETWEEN TWO METHODS OF RECOMBINANT INBRED LINE DEVELOPMENT

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., Zhu, J., McCarty, J.C., Watson, C.E. 2003. Comparisons of quantitative trait locus mapping properties between two methods of recombinant inbred line development. Euphytica. 132:159-166.CHROMOSOMAL EFFECT ON FIBER AND AGRONOMIC TRAITS UTILIZING GOSSYPIUM BARBADENSE CHROMOSOME-SPECIFIC F2 HYBRID POPULATION OF G. HIRSUTUM

- (Proceedings)Saha, S., Raska, D.A., Jenkins, J.N., McCarty Jr, J.C., Gutierrez, O.A., Percy, R.G., Cantrell, R.G., Wu, J., Zhu, J., Stelly, D.M. 2004. Effect of chromosome on important quantitative traits of agronomic and fiber traits using Gossypium barbadense chromosome-specific recombinant lines of Gossypium hirsutum. World Cotton Research Conference Proceedings. p. 170-174.MOLECULAR TAGGING OF FIBER YIELD GENES USING INTRASPECIFIC R1 LINES OF G. HIRSUTUM DEVELOPED IN UZBEKISTAN

- (Proceedings)Abdurakhmonov, I., Buriev, Z., Saha, S., Musaev, J., Almatov, A., Pepper, A.E., Reddy, O.U., Jenkins, J.N., Abdullaev, A., Abdukarimov, A. 2004. Molecular tagging of fiber yield genes using intraspecific R1 lines developed in Uzbekistan. World Cotton Research Conference Proceedings. p. 320-326.PRIMITIVE ACCESSIONS OF COTTON AS GENETIC SOURCES FOR IMPROVING YIELD AND FIBER PROPERTIES

- (Proceedings)McCarty Jr, J.C., Jenkins, J.N., Wu, J. 2004. Primitive accessions of cotton as genetic sources for improving yield and fiber properties. World Cotton Research Conference Proceedings. p. 114-118.MONTE CARLO SIMULATIONS ON MARKER GROUPING AND ORDERING

- (Peer Reviewed Journal)Wu, J., Jenkins, J.N., Zhu, J., McCarty, J.C., Watson, C.E. 2003. Monte carlo simulations on marker grouping and ordering. Theoretical Applied Genetics. 107:568-573.USE OF PRIMITIVE ACCESSION OF COTTON AS SOURCES OF GENES FOR IMPROVING YIELD COMPONENTS AND FIBER PROPERTIES

- (Experiment Station)MCCARTY JR, J.C., JENKINS, J.N., WU, J. USE OF PRIMITIVE ACCESSIONS OF COTTON AS SOURCES OF GENES FOR IMPROVING YIELD COMPONENTS AND FIBER PROPERTIES. MISSISSIPPI AGRICULTURAL AND FORESTRY EXPERIMENT STATION TECHNICAL BULLETIN 1130. 2003. 17p.COMPUTER SOFTWARE FOR ESTIMATING VARIANCE AND COVARIANCE COMPONENTS,       CORRELATION, AND PREDICTING GENETIC EFFECTS

- (Book / Chapter)Wu, J., Zhu, J., Jenkins, J.N. 2003. Mixed linear model approaches for quantitative genetic models. In: Kang, M.S., editor. Handbook of Formulas and Software for Plant Geneticists and Breeders. Binghamton, NY: The Haworth Press, Inc. p. 171-180.IMPLEMENTATION OF A WIRELESS HIGH-SPEED LOCAL AREA NETWORK FOR PRECISION AGRICULTURE APPLICATIONS

- (Abstract Only)Mckinion, J.M., Turner, S. B., Willers, J. L., Jenkins, J.N., Read, J.J., McDade, J. 2003. Implementation of a wireless, high-speed local area network for precision agriculture applications [abstract]. Proceedings National Cotton Council Beltwide Cotton Conference. p. 2553.ALLELIC PLASTICITY OF SIMPLE SEQUENCE REPEATS AMONG DOMESTICATED AND WILD SPECIES OF CAPSICUM

- (Abstract Only)Reddy, U.K., Padmavathi, N., Saha, S., Besong, S., Bates, G.T., Katam, R., Saha, S., Jenkins, J.N., Stommel, J.R., Quirin, E. 2003. Allelic plasticity of simple sequence repeats among domesticated and wild species of capsicum. Plant and Animal Genome Conference Proceedings. p. 523.MOLECULAR DIVERSITY AMONG SWEETPOTATO GERMPLASM WITH HIGH AND LOW ALLELOPATHIC POTENTIAL USING SSRS AND AFLPS

- (Abstract Only)Reddy, U.K., Padmavathi, N., Saha, S., Besong, S., Saha, S., Jenkins, J.N., Bain, A.M., Peterson, J.K., Harrison Jr, H.F., Bohac, J. 2003.  Molecular diversity among sweet potato germplasm with high and low allelopathic potential using SSRs and AFLPs [abstract]. Plant and Animal Genome Conference Proceedings. p. 696.DI AND TRI NUCLEOTIDE REPEAT MOTIFS FOR MARKER DEVELOPMENT IN WATERMELON

- (Abstract Only)Reddy, U.K., Padmavathi, N., Saha, S., Katam, R., Saha, S., Jenkins, J.N., Thomas, C.E., Levi, A. 2003. Di and tri nucleotide repeat motifs for marker development in watermelon. Plant and Animal enome Conference Proceedings. p. 182.WITHIN BOLL YIELD COMPONENTS OF SIX CULTIVARS OF COTTON AND THEIR F1 AND F2 PROGENY

- (Abstract Only)COLE, C.B., JENKINS, J.N., MCCARTY JR, J.C. WITHIN BOLL YIELD COMPONENTS OF SIX CULTIVARS OF COTTON AND THEIR F1 AND F2 PROGENY. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 824EST-SSR: USEFUL MARKERS FOR MOLECLAR MAPPING IN COTTON

- (Abstract Only)KATAM, R., QURESHI, S.N., WU, J., SAHA, S., JENKINS, J.N., MCCARTY JR, J.C., REDDY, U.K., KANTETY, R.V., ZHU, J. EST-SSR: USEFUL MARKERS FOR MOLECLAR MAPPING IN COTTON. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 884.APPLICATIONS OF MIXED LINEAR MODEL APPROACHES ON COTTON QUANTITATIVE GENETICS

- (Abstract Only)WU, J., JENKINS, J.N., MCCARTY JR, J.C., ZHU, J. APPLICATIONS OF MIXED LINEAR MODEL APPROACHES ON COTTON QUANTITATIVE GENETICS. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 825.POTENTIAL USE OF BULKED-POLLEN METHODOLOGY IN COTTON

- (Abstract Only)GUTIERREZ, O.A., JENKINS, J.N., MCCARTY JR, J.C., BOWMAN, D.T., WATSON, C.E. POTENTIAL USE OF BULKED-POLLEN METHODOLOGY IN COTTON. CD-ROM. Proceedings Beltwide Cotton Conference. 2003. p. 784.MOLECULAR CLONING, DIFFERENTIAL EXPRESSION, AND FUNCTIONAL CHARACTERIZATION OF A FAMILY OF CLASS I UBIQUITIN-CONJUGATING ENZYME (E2) GENES IN COTTON (GOSSYPIUM)

- (Peer Reviewed Journal)ZHANG, X., JENKINS, J.N., CALLAHAN, F.E., CREECH, R.G., SI, Y., MCCARTY JR, J.C., SAHA, S., MA, D. MOLECULAR CLONING, DIFFERENTIAL EXPRESSION, AND FUNCTIONAL CHARACTERIZATION OF A FAMILY OF CLASS I UBIQUITIN-CONJUGATING ENZYME (E2) GENES IN COTTON (GOSSYPIUM). BIOCHIMICA ET BIOPHYSICA ACTA. 2003.  v.1625.p.269-279.ISOLATION OF RESISTANCE GENE ANALOGS IN COTTON (GOSSYPIUM HIRSUTUM L.)     BASED ON CONSERVED DOMAINS OF PLANT DISEASE RESISTANCE GENES

- (Peer Reviewed Journal)Tan, H., Callahan, F.E., Zhang, X.D., Karaca, M., Saha, S., Jenkins, J.N., Creech, R.G., Ma, D.P. 2003. Identification of resistance gene analogs in cotton (Gossypium hirsutum L.) Euphytica. 134:1-7.PRIMITIVE ACCESSIONS OF COTTON AS GENETIC SOURCES FOR IMPROVING YIELD AND FIBER PROPERTIES

- (Abstract Only)McCarty Jr., J.C., Jenkins, J.N., Wu, J. 2004. Primitive accessions of cotton as genetic sources for improving yield and fiber properties. World Cotton Research Conference Proceedings. p. 113-118.A NOVEL METHOD FOR SCREENING COTTON CDNAS USING FLUOROCHROME-LABELED       SSR-SPECIFIC PRIMERS

- (Peer Reviewed Journal)SAHA, S., KARACA, M., JENKINS, J.N., ZIPF, A., REDDY, U., PEPPER, A. Simple sequence repeats as useful resources to study transcribed genes of cotton.  Euphytica. 2003. v.130.p.355-364.GENETIC DIVERSITY AMONG FORAGE BERMUDAGRASS (CYNODON SPP.): EVIDENCE       FROM CHLOROPLAST AND NUCLEAR DNA FINGERPRINTING

- (Peer Reviewed Journal)KARACA, M., SAHA, S., ZIPF, A.E., JENKINS, J.N., LANG, D.L. GENETIC DIVERSITY AMONG FORAGE BERMUDAGRASS (CYNODON SPP.): EVIDENCE FROM CHLOROPLAST AND NUCLEAR DNA FINGERPRINTING. CROP SCIENCE. 2002. V.42.P.2118-2127.CHROMOSOME SUBSTITUTION LINES IN COTTON IMPROVEMENT

- (Abstract Only)Saha, S., Stelly, D.M., Gutierrez, O.A., Jenkins, J.N., McCarty Jr., J.C., Cantrell, R.G., Percy, R.G., Raska, D.A. 2002. Chromosome substitution lines in cotton improvement. Cotton Science. 14(S): 78.REGISTRATION OF 16 DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM LINES

- (Peer Reviewed Journal)MCCARTY JR, J.C., JENKINS, J.N. REGISTRATION OF 16 DAY-NEUTRAL PRIMITIVE COTTON GERMPLASM LINES. CROP SCIENCE. 2002. v.42.p.1755-1756.DNA MARKERS LINKED TO LIGON LINTLESS (LI1) MUTANT IN COTTON

- (Peer Reviewed Journal)KARACA, M., SAHA, S., JENKINS, J.N., ZIPF, A., KOHEL, R.J., STELLY, D. Simple sequence repeat (SSR) markers linked to the ligon lintless (li1) mutant in cotton. JOURNAL OF HEREDITY. 2002. v.93.p.221-224.CDNA CLONING OF A 14 KDA PROTEIN OF COTTON (GOSSYPIUM HIRSUTUM L.) INDUCED AFTER INOCULATION WITH ROOT-KNOT NEMATODE (MELOIDOGYNE INCOGNITA):         IDENTIFICATION OF A UNIQUE, ROOT-SPECIFIC GENE FAMILY

- (Peer Reviewed Journal)GENETIC DISTANCE OF COTTON BASED ON SSR MARKERS AND ITS RELATIONSHIP       WITH F2-HYBRID PERFORMANCE

- (Peer Reviewed Journal)GUTIERREZ, O.A., BASU, S., SAHA, S., JENKINS, J.N., SHOEMAKER, D.B., CHEATHAM, C.L., MCCARTY JR, J.C. GENETIC DISTANCE AMONG SELECTED GENOTYPES AND ITS RELATIONSHIP WITH F2 PERFORMANCE. CROP SCIENCE. 2002. V.42.P.1841-1847.SEGREGATION OF DNA MARKERS AND THE DAY-NEUTRAL PHENOTYPE IN BACKCROSS      POPULATIONS OF COTTON

- (Peer Reviewed Journal)Zhong, M., McCarty Jr, J.C., Jenkins, J.N., Saha, S. 2002. Assessment of day-neutral backcross populations of cotton using AFLP markers. Journal of Cotton Science. 6:97-103.SEPARATION OF SINGLE GENE EFFECTS FROM ADDITIVE-DOMINANCE GENETIC MODELS

- (Proceedings)A NOVEL STRATEGY FOR GENERAL SUSTAINABILITY AND RESISTANCE MANAGEMENT      IN PEST AND PATHOGEN RESISTANT CROPS

- (Peer Reviewed Journal)ANALYSIS OF A PRECISION AGRICULTURE APPROACH TO COTTON PRODUCTION

- (Peer Reviewed Journal)PREFACE OF BOOK ENTITLED "EMERGING TECHNOLOGIES IN THE GENETIC             IMPROVEMENT OF COTTON" (BOOK EDITED BY JOHNIE N JENKINS AND SUKUMAR SAHA)

- (Review Article)MOLECULAR MARKERS AND QUANTITATIVE TRAITS IN GOSSYPIUM HIRSUTUM L.

- (Book / Chapter)IMPROVED METHODS FOR SCREENING COTTON CDNAS USING FLUOROCHROME-LABELED     AFLP- AND SSR-SPECIFIC PRIMERS

- (Book / Chapter)MOLECULAR IDENTIFICATION OF CYTOPLASMIC-SPECIFIC TRANSCRIPTS IN COTTON

- (Proceedings)NEW DINUCLEOTIDE AND TRINUCLEOTIDE MICROSATELLITE RESOURCES FOR COTTON     GENOME RESEARCH

- (Peer Reviewed Journal)REDDY, O.U., PEPPER, A.E., ABDURAKMONOV, I., SAHA, S., JENKINS, J.N., BROOKS, T., BOLEK, Y., EL-ZIK, K.M. NEW DINUCLEOTIDE AND TRINUCLEOTIDE MICROSATELLITE RESOURCES FOR COTTON GENOME RESEARCH. JOURNAL OF COTTON SCIENCE. 2000. V.5.P.103-113.PRELIMINARY GENETIC STUDY FOR RECOMBINANT INBRED LINES OF UPLAND COTTON

- (Abstract Only)FRUITING CHARACTERISTICS OF SELECTED U.S. AND ACSI CULTIVARS AND THEIR     HYBRIDS

- (Abstract Only)EVALUATION OF AN EXPERIMENTAL PLANT GROWTH REGULATOR ON TWO CULTIVARS

- (Abstract Only)IDENTIFICATION OF LIGON LINTLESS-1 SPECIFIC TRANSCRIPTS IN COTTON

- (Abstract Only)MOLECULAR IDENTIFICATION OF CYTOPLASMIC SPECIFIC TRANSCRIPTS IN COTTON

- (Abstract Only)RESISTANCE TO TOBACCO BUDWORM IN EXOTIC COTTON GERMPLASM

- (Abstract Only)GENETIC VARIATION OF EARLY AND LATE SEASON BOLL RETENTION

- (Abstract Only)EVALUATION OF CULTIVAR BY RACE STOCK F2 HYBRIDS

- (Abstract Only)ISOLATION AND CHARACTERIZATION OF DISEASE RESISTANCE GENES FROM COTTON

- (Abstract Only)A COMPARATIVE STUDY INVOLVING TRANSGENIC LINES OF COTTON WITH AN           EMPHASIS ON MATURITY, YIELD, AND YIELD COMPONENTS

- (Abstract Only)GEL BASED DNA MARKER TECHNOLOGIES IN COTTON

- (Peer Reviewed Journal)ANALYSIS OF PROMOTER ACTIVITY OF COTTON LIPID TRANSFER PROTEIN GENE        LTP6 IN TRANSGENIC TOBACCO PLANTS

- (Peer Reviewed Journal)GENETIC ASSOCIATION AMONG YIELD AND FRUITING TRAITS IN F2 HYBRID COTTON

- (Abstract Only)NEMATODE RESISTANCE IN COTTON

- (Book / Chapter)MOLECULAR MARKER BASED GENETIC ANALYSIS OF QTL'S USING RECOMBINANT INBRED  LINES IN COTTON

- (Abstract Only)PRECISION FARMING, MYTH OR REALITY:  A CASE STUDY IN MISSISSIPPI           COTTON FIELDS

- (Abstract Only)AN RFLP AND QTL LINKAGE MAP IN GOSSYPIUM HIRSUTUM L.

- (Proceedings)DNA FINGERPRINTING IN COTTON USING SSR PRIMERS FROM DIVERSE PLANT          SPECIES

- (Peer Reviewed Journal)DIVERSITY OF PRIMITIVE UPLAND COTTON GERMPLASM

- (Proceedings)CHROMOSOMAL LOCATION OF RFLP MARKERS LINKED TO QTL IN COTTON

- (Proceedings)QTL ASSOCIATED WITH AGRONOMIC AND FIBER TRAITS OF UPLAND COTTON            (GOSSYPIUM HIRSUTUM L.)

- (Peer Reviewed Journal)AN RFLP LINKAGE MAP OF UPLAND COTTON (GOSSYPIUM HIRSUTUM L.)

- (Peer Reviewed Journal)COTTON GERMPLASM:  ROOT-KNOT NEMATODE RESISTANCE IN DAY-NEUTRAL            PRIMITIVE ACCESSIONS

- (Experiment Station)TRANSGENIC PLANTS EXPRESSING TOXINS FROM BACILLUS THURINGIENSIS

- (Book / Chapter)INTROGRESSION OF DAY-NEUTRAL GENES IN PRIMITIVE COTTON ACCESSIONS:         II.  PREDICTED GENETIC EFFECTS

- (Peer Reviewed Journal)INTROGRESSION OF DAY-NEUTRAL GENES IN PRIMITIVE COTTON ACCESSIONS:         I. GENETIC VARIANCES AND CORRELATIONS

- (Peer Reviewed Journal)DNA MARKERS IN COTTON

- (Abstract Only)COTTON WITH DELTA ENDOTOXIN GENES FROM BACILLUS THURINGIENSIS KURSTAKI:    II.  INSECT RESISTANCE AND AGRONOMIC PERFORMANCE

- (Peer Reviewed Journal)EXPRESSION OF A UBIQUITIN-CONJUGATING ENZYME GENE IN COTTON ROOT

- (Abstract Only)CALORIC ANALYSIS OF THE DISTRIBUTION OF ENERGY IN RIPENED COTTON

- (Proceedings)GENETICS OF PHOTOPERIODISM IN GOSSYPIUM HIRSUTUM RACE STOCKS

- (Abstract Only)DEVELOPMENT AND MATURITY MEASUREMENTS ON TRANSGENIC BT AND                 ROUNDUP READY COTTON

- (Abstract Only)DIFFERENT SOURCES OF ROOT-KNOT NEMATODE RESISTANCE

- (Abstract Only)DAMAGE AND BEHAVIORAL PATTERNS OF HELIOTHIS VIRESCENS AND                  HELICOVERPA ZEA ON UPLAND COTTON

- (Abstract Only)COMPARISON OF FIBER DEVELOPMENT AND BOLL MATURITY BY FRUITING SITES        OF AN EARLY AND FULL SEASON COTON CULTIVAR

- (Abstract Only)CLONING AND CHARACTERIZATION OF A COTTON LIPID TRANSFER PROTEIN            GENE SPECIFICALLY EXPRESSED IN FIBER CELLS

- (Peer Reviewed Journal)PERFORMANCE OF COMMERCIAL COTTON CULTIVARS UNDER ELEVATED LEVELS OF        TOBACCO BUDWORMS

- (Peer Reviewed Journal)
                    ARS News Articles
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                                                USDA Researchers Develop Naturally Fire-Resistant Cotton Linesitem
                                                Newly Found Genes May Lead to Nematode-resistant Upland Cottonitem
                                                ARS Study Helps Farmers Make Best Use of Fertilizers


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