# Patent

## Title
Composition and formulation comprising recombinant human iduronate-2-sulfatase and preparation method thereof

## Abstract

A composition comprising recombinant iduronate-2-sulfatase (IDS) and a method for producing a purified recombinant IDS are provided. The glycosylation pattern and formylglycine content of the IDS composition are different from those of ELAPRASE® and have superior pharmaceutical efficacy and are safer than the conventional agent and thus can be effectively used for the therapy of Hunter syndrome.

## Background
CROSS REFERENCE TO RELATED APPLICATIONS
This application is a continuation of Ser. No. 14/976,073 filed Dec. 21, 2015 (pending), which is a continuation-in-part of application Ser. No. 14/809,856 filed Jul. 27, 2015 (issued as U.S. Pat. No. 9,249,397), which is a continuation of application Ser. No. 14/128,918 filed Dec. 23, 2013 (issued as U.S. Pat. No. 9,206,402), which is a National Stage of International Application No. PCT/KR2012/004734 filed Jun. 15, 2012, claiming priority based on Korean Patent Application No. 10-2012-0012718 filed Feb. 8, 2012 and U.S. Provisional Patent Application No. 61/500,994 filed Jun. 24, 2011, the contents of all of which are incorporated herein by reference in their entirety.


TECHNICAL FIELD
The present invention relates to a composition for the treatment of Hunter syndrome, comprising recombinant human iduronate-2-sulfatase (hereinafter referred to as “IDS”), a formulation comprising the same, and a method for preparing the same.
More particularly, the composition for the treatment of Hunter syndrome in accordance with the present invention comprises as an active ingredient IDS having an amino acid sequence represented by SEQ ID NO: 1, wherein cysteine residue at position 59 in the IDS amino acid sequence of SEQ ID NO: 1 is converted to formylglycine (FGly: 2-amino-3-oxopropionic acid) at a molar ratio of 65% or higher, preferably at a molar ratio of 75% or higher, and more preferably at a molar ratio of 80% or higher. The IDS peptide of SEQ ID NO: 1 wherein the amino acid residue at position 59 is formylglycine is identified as SEQ ID NO: 9. In addition, the IDS contained in the composition for the treatment of Hunter syndrome contains mannose-6-phosphate in an amount of 2.0 to 4.0 moles per mole of IDS, preferably in an amount of from 2.3 to 3.5 moles, and more preferably in an amount of from 2.5 to 3.0 moles.
The method for preparing the composition for the treatment of Hunter syndrome in accordance with the present invention comprises:
(1) culturing a recombinant cell line transfected with a gene encoding IDS represented by SEQ ID NO: 1 and obtaining the culture; and
(2) purifying the culture through anion exchange chromatography, hydrophobic chromatography, cation exchange chromatography, and affinity chromatography,
characterized in that the recombinant cell line is cultured in the presence of a hydrolysate and the cation exchange chromatography may be performed using an eluting buffer with a pH of 4.0 to 6.0.
In an exemplary embodiment, the cation exchange chromatography may be performed at a pH of 5.3±0.2.
Having advantages over conventional products in terms of safety and pharmaceutical efficacy, the therapeutic composition comprising IDS and the formulation comprising the same can be effectively used to treat Hunter syndrome.
BACKGROUND ART
Hunter syndrome or mucosaccharidosis type II is a lysosomal storage disease (LSD) in which mucopolysaccharides, also known as glycosaminoglycans (GAG), are not broken down correctly and build up in the body due to a deficiency of IDS. As GAG continues to buildup throughout the cells of the body, various signs of Hunter syndrome become more visible. Physical manifestations for some people with Hunter syndrome include distinct facial features and a large head. Representative among the symptoms of Hunter syndrome are an enlarged abdomen due to hepatomegaly or splenomegaly, deafness, valvular heart disease, obstructive airway disease and sleep apnea. Also, major joints may be affected by Hunter syndrome, leading to joint stiffness and limited motion. In some cases of Hunter syndrome, central nervous system involvement leads to developmental delays and nervous system problems. Hunter syndrome is a known to occur at a rate of 1 in 162,000 and is a genetic disorder in the form of chromosome X-linked recessive and so given the great suffering to the family as well as the patient.
Various trials have been carried out thus regarding the treatment of Hunter syndrome, including bone marrow graft, enzyme replacement, and gene therapy. While bone marrow graft is able to stop most of the symptoms, it is difficult to find an HLA (human leukocyte antigen) match for all patients. Further, a bone marrow graft is a major surgical operation accompanied by several adverse effects, including the patient's life being put under high risk if the HLA is mismatched. Gene therapy for Hunter syndrome delivers a normal IDS gene into the body with the aid of a viral vector such as adenovirus or retrovirus or a non-viral vector. However, gene therapy remains an experimental technique, and has not been clinically applied. As for the enzyme replacement treatment for Hunter syndrome, it administers externally produced IDS and has the advantage of being simple. However, enzyme replacement must be continuously carried out, which incurs a high expense. ELAPRASE® (Shire Pharmaceuticals Group), produced using recombinant DNA technology, was approved by the FDA as an enzyme replacement treatment for Hunter syndrome. However, this drug is very expensive and suffers from the drawbacks of insufficient efficacy and safety.
As described above, although various therapies for Hunter syndrome have been developed, there is still a pressing need for a new therapy and agent that exhibits high therapeutic efficacy with high safety.
DISCLOSURE
Technical Problem
It is an object of the present invention to overcome the problems encountered in the prior art and to provide a composition for the therapy of Hunter syndrome, comprising recombinant IDS as an active ingredient, which guarantees high therapeutic efficacy and safety, as produced by improved culturing and purifying processes, and a formulation comprising the same.
It is another object of the present invention to provide a method for preparing the composition for the treatment of Hunter syndrome and the formulation comprising the same.
Technical Solution
To achieve the above object, the present invention provides a composition for the therapy of Hunter syndrome, comprising as an active ingredient a recombinant IDS having an amino acid sequence represented by SEQ ID NO: 1, wherein cysteine residue at position 59 is converted to formylglycine (FGly) at a molar ratio of 65% or higher, preferably at a molar ratio of 75% or higher, and more preferably at a molar ratio of 80% or higher.
IDS, herein also called iduronate-2-sulfatase or I2S, has a molecular size of 56 kDa when isolated and purified from the human liver, kidney or placenta (Bielicki, J. et al. (1990) Biochem, J., 271: 75 ̃86). IDS is expressed as a monomeric protein of 550 amino acids and is secreted into the medium as a mature active protein of 525 amino acids following cleavage of the 25 amino acid signal peptide. The molecular weight of IDS varies with glycosylation and was found to range from approximately 60 to 90 kDa upon treatment with endoglycosidase F, as measured by SDS-PAGE.
IDS contains two disulfide bonds and eight N-linked glycosylation sites and is produced as a glycoprotein after undergoing post-translation modification in which the N-linked glycosylation sites are occupied by complex, hybrid and high mannose type oligosaccharide chains in eukaryotes. Once secreted into the culture medium, IDS may be used as a drug after going through typical isolation and purification processes. IDS may be in the form of glycoproteins with various glycosylation patterns, depending on various factors, including, for example, IDS genetic recombination, transfection (e.g., used cell lines), culture and purification techniques.
In this invention, it is disclosed that the content of mannose-6-phosphate (M6P) and the conversion ratio of Cys-59 to FGly have a great influence on the therapeutic efficacy and safety of IDS. The presence of mannose-6-phosphate (M6P) residues allows specific binding of the enzyme to M6P receptors on the cell surface, leading to cellular internalization of the enzyme, targeting of lysosomes and subsequent catabolism of accumulated GAG. Biological activity of IDS is also dependent on a post-modification of the conserved cysteine (position 59) to formylglycine.
Unless stated otherwise, the term “IDS,” as used herein, means a carbohydrate-attached IDS protein, that is, a glycosylated IDS. The IDS of the present invention preferably has an amino acid sequence of SEQ ID NO: 1, but is not limited thereto. It should be apparent to those who have ordinary knowledge in the art (hereinafter referred to as “ordinary artisan”) that so long as it allows the IDS to retain the desired activity, any amino acid sequence in which mutations such as insertion, deletion and substitution occur on some amino acid residues of the amino acid sequence of SEQ ID NO: 1 falls within the scope of the present invention.
As used herein, the term “glycosylation pattern” of IDS refers to the profile of oligosaccharides bound to the eight glycosylation sites of the resulting IDS (e.g., glycosylation sites and kinds of oligosaccharides).
In one embodiment, the IDS contained in the composition for the therapy of Hunter syndrome in accordance with the present invention has the same amino acid sequence as is known (SEQ ID NO: 1), but has a different glycosylation pattern and a different conversion ratio of cysteine at position 59 to formyl glycine, as described above (refer to Examples 1-5 and 1-6).
That is, the IDS used in the composition for the therapy of Hunter syndrome according to the present invention has an amino acid sequence of SEQ ID NO: 1 with the conversion of cysteine at position 59 to formyl glycine (FGly) at a molar ratio of 65% or higher, preferably at a molar ratio of 75% or higher, and more preferably at a molar ratio of 80% or higher, whereas the conversion ratio in ELAPRASE® is approximately 50% (Genet Med 2006:8(8):465-473). Formylglycine is known to be deeply involved in the ability of IDS to degrade the substrate, that is the activity of IDS. Thus, because the composition of the present invention and the conventional agent ELAPRASE® are different, the composition and the formulation according to the present invention can exhibit higher therapeutic efficacy for Hunter syndrome than can the conventional agent ELAPRASE® because of a greater cytosine to formylglycine conversion ratio at position 59 on the amino acid sequence of IDS.
In addition, the IDS used in the composition or the formulation for the therapy of Hunter syndrome in accordance with the present invention contains mannose-6-phosphate in an amount of from 2.0 to 4.0 moles per mole of IDS, preferably in an amount of from 2.3 to 3.5 moles and more preferably in an amount of from 2.5 to 3.0 moles. M6P plays an important role in the cellular internalization of IDS and subsequent targeting to intracellular lysosomes. Thus, the formulation of the present invention comprising IDS with a high content of M6P guarantees the high performance of the receptor-mediated uptake mechanism for this enzyme and targeting to lysosomes, thereby resulting in the effective catabolism of accumulated GAG.
The formulation for the therapy of Hunter syndrome comprising IDS in accordance with the present invention can be prepared by formulating the composition of the present invention with a pharmaceutically acceptable carrier into a suitable form.
According to the recommendation from the World Health Organization (WHO), Guidelines on the Quality, Safety, and Efficacy of Biotherapeutic Protein Products Prepared by Recombinant DNA Technology, adopted by the 64th meeting of the WHO Expert Committee on Biological Standardization, 21-25 Oct. 2013, the level of cell-derived and plasmid-derived DNA should be not more than 10 ng per purified dose. For biological medicines used chronically over a lifetime (e.g. human insulin, erythropoietin or factor VIII), the level of host-cell proteins should be not more than 10 parts per million. (TGA Guidance 18. Australian Government, Version 1.0, August 2013)
As used herein, the term “pharmaceutically acceptable” carrier refers to a non-toxic, physiologically compatible vehicle for the active ingredient, which is suitable for ingestion by animals, without undue toxicity, incompatibility, instability, irritation, allergic response and the like.
The composition according to the present invention may be formulated with a suitable vehicle depending on the administration route taken. The formulation according to the present invention may be administered orally or parenterally but this is not limited to these. For parenteral administration, a route selected from among transdermal, intranasal, intraperitoneal, intramuscular, subcutaneous or intravenous routes may be taken.
For oral administration, the pharmaceutical composition may be formulated in combination with a suitable oral vehicle into powders, granules, tablets, pills, troches, capsules, liquids, gels, syrups, suspensions and wafers using a method known in the art. Examples of the suitable vehicle useful in the formulation include sugars such as lactose, dextrose, sucrose, sorbitol, mannitol, xylitol, erythritol and maltitol, starches such as corn starch, wheat starch, rice starch, and potato starches, celluloses such as cellulose, methyl cellulose, sodium carboxymethyl cellulose, and hydroxypropyl methyl cellulose, and fillers such as gelatin and polyvinylpyrrolidone. Optionally, the formulation may further comprise a disintegrant such as crosslinked polyvinylpyrrolidone, agar, alginic acid or sodium alginate. In addition, an anti-agglomerating agent, a lubricant, a wetting agent, a fragrant, an emulsifier, and a preservative may be further employed.
Also, the composition of the present invention may be formulated in combination with a parenteral vehicle into a parenteral dosage form such as an injectable preparation, a transdermal preparation or an intranasal inhalation using a method well known in the art. For use in injection, the formulation must be sterilized and protected from contamination with microorganisms such as bacteria and fungi. Examples of the vehicle suitable for injection may include, but are not limited to, water, ethanol, polyol (e.g., glycerol, propylene glycol, liquid polyethylene glycol, etc.), combinations thereof, and/or a vegetable oil-containing solvent or dispersion medium. More preferably, the vehicle may be an isotonic solution such as Hank's solution, a Ringer's solution, triethanol amine-containing PBS (phosphate buffered saline) or injectable sterile water, 10% ethanol, 40% propylene glycol and 5% dextrose. In order to protect the injectable preparation from microbial contamination, it may further comprise an antibacterial and antifungal agent such as paraben, chlorobutanol, phenol, sorbic acid, thimerosal, etc. Also, the injectable preparations may further comprise, in most cases, an isotonic agent such as sugar or sodium chloride. These formulations are disclosed in a document well known in the pharmaceutical field (Remington's Pharmaceutical Science, 15th Edition, 1975, Mack Publishing Company, Easton, Pa.). As concerns inhalation, the formulation according to the present invention may be delivered conveniently in the form of an aerosol spray from a compressed pack or sprayer using a suitable propellant, such as dichlorofluoromethane, trichlorofluoromethane, dichlorotetrafluoroethane, carbon dioxide or a suitable gas. In the case of compressed aerosol, the unit size of a dose may be determined by a valve for delivering a metered amount. For example, gelatin capsules and cartridges for use in an inhaler or insufflator can be formulated containing a powder mix of the compound and a suitable powder base such as lactose or starch for these systems.
Other suitable pharmaceutical vehicles are described in Remington's Pharmaceutical Sciences, 19th ed., Mack Publishing Company, Easton, Pa., 1995.
Moreover, the formulation according to the present invention may further comprise one or more buffers (e.g., saline or PBS), carbohydrates (e.g., glucose, mannose, sucrose or dextran), stabilizers (sodium hydrogen sulfite, sodium sulfite or ascorbic acid), anti-oxidants, bacteriostatics, chelating agents (e.g., EDTA or glutathione), adjuvants (e.g., aluminum hydroxide), suspending agents, thickeners and/or preservatives (benzalkonium chloride, methyl- or propyl-paraben and chlorobutanol).
Also, the composition of the present invention may be formulated into a dosage form that allows the rapid, sustained or delayed release of the active ingredient after being administered into mammals. An effective amount of the formulation thus prepared may be administered via a variety of routes including oral, transdermal, subcutaneous, intravenous and intramuscular routes. The term “effective amount,” as used herein refers to an amount of IDS that allows tracing the diagnostic or therapeutic effect to take place when administered into a patient. The dose of the formulation according to the present invention may vary depending on various factors including, the route of administration, the type of subject to be treated, the type of disease to be treated, the administration route, the severity of the illness, and the patient's age, gender, weight, condition, and health state. The formulation comprising IDS according to the present invention may be used at a dose of from 0.1 to 10 mg/kg and preferably at a dose of from 0.5 to 1.0 mg/kg per dosage.
The method for preparing the therapeutic composition in accordance with the present invention comprises:
(1) culturing a recombinant cell line transfected with a gene encoding IDS represented by SEQ ID NO: 1 and obtaining the culture; and
(2) purifying the culture through anion exchange chromatography, hydrophobic chromatography, cation exchange chromatography, and affinity chromatography,
wherein, the recombinant cell line is cultured in the presence of a hydrolysate and the cation exchange chromatography is performed using an eluting buffer with a pH of 4.0 to 6.0.
More particularly, the method for preparing the therapeutic composition in accordance with the present invention comprises:
(1) transfecting a host cell with an expression vector carrying a IDS gene to obtain a recombinant cell line;
(2) culturing the recombinant cell line in the presence of a hydrolysate in a serum-free medium and obtaining the culture;
(3) purifying IDS from the culture through anion exchange chromatography, hydrophobic chromatography, cation exchange chromatography and affinity chromatography, said cation exchange chromatography being performed using an eluting buffer ranging in a pH from 4.0 to 6.0;
(4) combining the purified IDS with a pharmaceutically acceptable carrier.
In an exemplary embodiment, an eluting buffer used in the cation exchange chromatography may have a pH of 5.3±0.2.
In the method, step (1) is directed to establishing a recombinant cell line by introducing an expression vector carrying an IDS gene into a host cell. The amino acid sequence of IDS and a gene encoding IDS are known in the art. A gene that codes for the IDS having the amino acid sequence of SEQ ID NO: 1 is preferred, but is not provided as a limiting example. If an amino acid sequence retains the activity of IDS sought to be brought about by the purpose of the present invention, although mutated by insertion, deletion and/or substitution of some amino acid residues on the amino acid sequence of SEQ ID NO: 1, its gene may be used in the present invention. The expression vector carrying the gene may be constructed using a typical method known in the art. In addition, the expression vector may contain a marker gene which allows the introduction of the gene to be identified. Examples of the marker gene include a dihydrofolate reductase gene (dhfr), but are not limited thereto. Preferable is a pJK-dhfr-Or2-IDS vector (FIG. 2).
The host cells available for step (1) may be animal cells and their examples include, but are not limited to, Chinese hamster ovary (CHO) cells, human embryonic kidney (HEK) cells, baby hamster kidney (BHK) cells, monkey kidney cell 7 (COS7), and NSO cells, with a preference for CHO cells. CHO cell lines are one of the most widely used in the production of biomedical products thanks to their high cell growth rates and productivity, ease of genetic manipulation, rapid proliferation in large-scale suspension cultures and high adaptation to protein-free media. The transfection in step (1) may be carried out according to a protocol known in the art.
In the method, step (2) is directed to culturing the recombinant cell line anchoring the IDS expression vector therein in a serum-free medium. The culturing may be carried out in a medium and under conditions optimized for the kind of host cell. Preferred is a serum-free medium. Being free of sera (e.g., bovine sera), such media avoid the likelihood of inducing the side effects or risks associated with sera.
In one embodiment of the present invention, the culturing of the recombinant cell line transfected with an IDS expression vector may be further scaled up. For example, the recombinant cell line of the present invention may be cultured in a shake flask and then scaled up to hundreds to thousands of liters in a bioreactor. The culturing step is carried out in the presence of a hydrolysate, which has an important influence on the determination of formylglycine content. Preferably, the hydrolysate is added in such an amount as to form a final concentration of 0.1 ̃10.0 g/L. The hydrolysate useful in the present invention may be those obtained by hydrolyzing an animal or plant material. More particularly, the hydrolysate may be obtained by hydrolyzing at least one selected from the group consisting of, but not limited to, soybean, potato, wheat germ, and yeast.
In the method, step (3) is directed to the purification of IDS from the cell culture through anion exchange chromatography, hydrophobic chromatography, cation exchange chromatography, and affinity chromatography.
Preferably, the four chromatographic processes may be performed in that order. However, it should be obvious to an ordinary artisan that the order may be changed if necessary. Together with the order of the chromatographic processes, the resins and the pH values of the eluting buffers are important in determining the glycosylation pattern and formylglycine content of IDS.
Anion exchange chromatography is intended to remove media components and various impurities from the cell culture and is performed on a column filled with Q SEPHAROSE® resins using an eluting buffer with a pH of from 5.5 to 7.5. In an exemplary embodiment, the eluting buffer may have a pH of 7.0±0.3.
Hydrophobic chromatography is intended to remove the media components and impurities that remain after anion exchange chromatography. It is performed on a column filled with phenyl SEPHAROSE® resins, using an eluting buffer at a pH of from 5.0 to 7.0. In an exemplary embodiment, the eluting buffer may have a pH of 5.5±0.2.
Cation exchange chromatography is intended to select high the formylglycine content and remove remaining impurities. It is performed on a column filled with cation exchange resins, using an eluting buffer with a pH of from 4.0 to 6.0. In an exemplary embodiment, the eluting buffer may have a pH of 5.3±0.2. Examples of the cation exchange resins useful in the present invention may include CM SEPHAROSETM Fast Flow, SP SEPHAROSETM Fast Flow, S SEPHAROSETM Fast Flow and CAPTOTM MMC, all from GE Healthcare, but are not limited thereto. Preferably, the eluting buffer ranges in pH from 4.0 to 6.0. In an exemplary embodiment, the pH of the eluting buffer may be 5.3±0.2.
Affinity chromatography is intended to remove the residual glycerol and concentrate the volume of the eluates. It is performed on a column filled with Blue SEPHAROSETM resins, using an eluting buffer with a pH of from 6.0 to 8.0. In an exemplary embodiment, the eluting buffer may have a pH of 6.2±0.2.
The conditions of each type of chromatography may be optimally modified by the ordinary artisan. With regard to more specific chromatography conditions, reference may be made to Example 1-5 described below.
The method for preparing the composition comprising IDS as an active ingredient in accordance with the present invention may further comprise inactivating viruses that may be incorporated into the composition. The inactivation may be conducted in various ways, and preferably by holding the culture at an acid condition, for example pH 3.0 ̃4.0. In an exemplary embodiment, the acidic condition may be of pH: 3.7±0.05. According to another exemplary embodiment, the inactivation may be conducted by holding the culture under a high pH condition for a predetermined time. The inactivating process may be achieved during the purification process, preferably during the chromatography, and more preferably between the hydrophobic chromatography and the cation exchange chromatography.
After the chromatographic processes, the active fraction thus obtained may be concentrated and filtered to afford IDS which can be used as the active ingredient of the pharmaceutical composition.
The composition may be mixed with a pharmaceutically acceptable carrier and formulated into a suitable dosage form.
The composition comprising the IDS, prepared by the method according to the present invention, has advantages over conventional IDS compositions as follows 1) it exerts higher pharmaceutical efficacy thanks to a higher formylglycine content, 2) it can more effectively catabolize GAG accumulated within lysosomes, 3) it is free of animal-derived serum and thus safe, and 4) it is safe and efficacious thanks to its purity of 99.9% or higher.
Advantageous Effects
The composition comprising the recombinant IDS and the formulation comprising the same in accordance with the present invention are superior in pharmaceutical efficacy and safety to the conventional agent ELAPRASE® and thus can be effectively used for the therapy of Hunter syndrome.



DESCRIPTION OF DRAWINGS
FIG. 1 is a view illustrating a scheme for constructing the pJK-dhfr-IDS-S1 vector used to construct an IDS expression vector.
FIG. 2 is a view illustrating a scheme for constructing the IDS expression vector pJK-dhfr-Or2-IDS from the pJK-dhfr-IDS-S1 of FIG. 1.
FIG. 3 is a flow chart illustrating the isolation and purification of IDS from transfected CHO-DG44.
FIG. 4 is a photograph showing an SDS-PAGE result of IDS for analyzing the N-terminal sequence where a marker was run on lane M, glycosylated IDS on lane 1, PNGase F on lane 2, and deglycosylated IDS on lane 3.
FIG. 5 is a flow chart illustrating the process of analyzing the amino acid sequence of IDS.
FIG. 6 is a view showing the amino acid sequence of SEQ ID NO: 1 as analyzed by MALDI-MS/MS and LC-ESI-MS/MS.
FIG. 7 is an RP-HPLC chromatogram of non-reduced and reduced IDS samples showing the position of disulfide bonds in IDS.
FIG. 8 is a view showing the positions of disulfide bonds in the IDS of the present invention as analyzed by MALDI-MS.
FIG. 9 is a view showing the positions of disulfide bonds in the IDS of the present invention as analyzed by MALDI-MS/MS.
FIG. 10 is a view indicating the positions of disulfide bonds in the IDS of SEQ ID NO: 1, obtained through MALDI-MS/MS.
FIG. 11 is a photograph showing IDS run by SDS-PAGE after treatment with various glycoside hydrolase enzymes to examine the glycosylation of the IDS of the present invention.
FIG. 12 is of HPAEC-PAD chromatograms showing the content of mannose-6-phosphate in the IDS of the present invention.
FIG. 13 is a size exclusion chromatogram showing the purity of the IDS of the present invention.
FIG. 14 is an ion chromatogram showing the catalytic activity of the IDS of the present invention on a natural substrate.
FIG. 15 is Lineweaver-Burk plot showing ratios of cellular uptake amounts of IDS relative to amount of IDS added to normal fibroblast cells.
FIG. 16 is a graph showing the amount of the IDS of the present invention internalized into normal human fibroblast cells and the cells of patients suffering from Hunter syndrome.
FIG. 17 is a view showing measurements of the formylglycine content in the IDS of the present invention.
FIG. 18 is a view showing IEF (isoelectric focusing) points of the IDS of the present invention before and after cation exchange chromatography wherein M is run on M lane, a loaded sample for cation exchange chromatography on lane 1, an eluate of cation exchange chromatography on lane 2, and a regeneration solution after cation exchange chromatography on lane 3.
FIG. 19 shows a glycoprofiling scheme for antibody and chemistry of 2-AB labeling.
FIG. 20 shows the oligosaccharides pattern of the IDS obtained in Example 1 <1-5>.
FIGS. 21(A) and 21(B) show the Ion Exchange High Performance Liquid Chromatography results of the IDS obtained in Example 1-5 and the comparative commercially available product, ELAPRASE®, respectively.
FIG. 22 shows the resorcinol method (Seliwanoff's test) used to quantify the amount of sialic acid in IDS (sialic acid causes color formation in the resorcinol method).
FIG. 23 shows the sialic acid reference and sialic acid composition chromatograms of the IDS.
FIG. 24 shows that IDS showed a band within the pH range of 3.5 or lower, as shown by an assay to analyze isoelectric point using a 2D concentration gradient.
FIG. 25A shows that GC1111 and ELAPRASE® reduced urinary GAG content down to normal mice level in a 24 week efficacy test in an IDS knock-out mouse.
FIG. 25B shows that GC1111 and ELAPRASE® showed a similar pattern of GAG reduction in the liver in a 24 week efficacy test in an IDS knock-out mouse.
FIG. 25C shows that GC1111 and ELAPRASE® showed a similar pattern of GAG reduction in the kidney in a 24 week efficacy test in an IDS knock-out mouse.
FIG. 25D shows that GC1111 and ELAPRASE® showed a similar pattern of GAG reduction in the heart in a 24 week efficacy test in an IDS knock-out mouse.
FIG. 25E shows that GC1111 and ELAPRASE® showed a similar pattern of GAG reduction in the spleen in a 24 week efficacy test in an IDS knock-out mouse.
FIG. 25F shows mouse PK data for GC1111 and ELAPRASE®.



MODE FOR INVENTION
A better understanding of the present invention may be obtained through the following examples which are set forth to illustrate, but are not to be construed as limiting the present invention.
According to the method below, human iduronate-2-sulfatase (IDS) was prepared by DNA recombination method. The method of preparation is briefly described in FIG. 3. The IDS prepared in accordance with the present invention was named “GC1111.” Features of GC1111 and ELAPRASE®, which is currently available on the market, are compared and summarized in Table 1 below.









TABLE 1





Category
GC1111
ELAPRASE ®







Manufacturer
Green Cross Corp.
Shire



(GCC)


Generic name
Idursulfase beta
Idursulfase


Amino acid
525 AAs, identical
525 AAs, identical



to human IDS,
to human IDS,



glycoprotein
glycoprotein


Formulation/Dose
Liquid,
Liquid,



6 mg/3 mL/vial
6 mg/3 mL/vial


Host cell
CHO-DG44
Human cell line HT-




1080


Expression vector
pJK-dhfr-Or2-IDS
pXI2S 1


MCB/WCB preparation
Serum-free
Bovine serum used


Culture method
Suspension culture,
Continuous culture,



fed-batch, serum-free
bovine serum used


Distillation process
2 UF processes,
2 UF processes,



4 column processes
6 column processes


Virus inactivation
Yes
No


process


M6P content
3.0 mol/mol
2.0 mol/mol


(cellular uptake)


Formylglycine content
80 ± 15%
50%


(substrate degradation)


Purity
99.9% or higher
99.9% or higher



Column, SDS-PAGE
Column, SDS-PAGE



(silver, SYPRO)



characterization,



spatial conformation





  Purity >99.9%: The degree of purity of GC1111 is expected to be higher than that of ELAPRASE ® and, thus, it is predictable that the stability related with adverse effects due to the presence of impurities and the overall effectiveness thereof will be enhanced.






Based on the criteria and the testing methods of purity analysis, characterization and the study of crystallization for spatial conformation, the absolute purity of the GC1111 is expected to be at least 99.9%.
Example 1: Preparation of IDS
<1-1> Gene Acquisition
Peripheral blood mononuclear cells (PBMC) were isolated from human blood as described previously [S. Beckebaum et al., Immunology, 2003, 109:487-495]. Total RNA was extracted from the PBMC according to a protocol described previously [M. J. Holland et al., Clin. Exp. Immunol., 1996, 105:429-435]. In order to construct a cDNA library from the total RNA, single-stranded cDNA was synthesized using oligo-(dT) primer with the aid of a single-strand synthesis kit (Boehringer mannheim). In this regard, DEPC-treated distilled water was added to an eppendorf tube containing 1 μg of the total RNA so as to form a final volume of 12.5 μL. Then, 1 μL of a 20 pmol oligo(dT) primer was added to the tube, followed by incubation at 70° C. for 2 min and cooling. To this reaction mixture were added 4 μL of a reaction buffer, 1 μL of dNTP, 1 μL of an RNase inhibitor, and 1 μL of reverse transcriptase which were then reacted at 42° C. for one hour to synthesize single stranded cDNA. PCR was performed on the cDNA as a template in the presence of primers of SEQ ID NOS: 2 to 4 to amplify a human IDS gene. In this context, each primer was designed to contain a restriction enzyme recognition site for use in gene cloning.
<1-2> Construction of Expression Vector
A. Construction of pJK-dhfr-IDS-S1 Vector
A light chain signal sequence of an antibody (derived from a part of the human IgG light chain) as a non-coding sequence was introduced into the 5′-terminus of the IDS gene acquired by Example <1-1> before PCR. After the PCR product obtained thereby was run on gel by electrophoresis, the human IDS gene was isolated using a gel extraction kit. The isolated IDS gene and the pJK-dhfr-Or2 vector (Aprogen) were digested with EcoRV and ApaI and ligated to each other at 16° C. for 20 hours. The recombinant vector thus constructed was transformed into E. coli (DH5α) which was then spread over an LB plate containing 50 μg/mL ampicillin and incubated overnight. Colonies grown on the plates were selected and cultured so as to isolate the plasmid therefrom (FIG. 1).
B. Construction of Recombinant Human IDS Expression Plasmid
In order to change the non-coding sequence of the plasmid constructed above to a signal sequence, the recombinant human IDS was subcloned to a pJK-dhfr-or2 vector. To this end, the pJK-dhfr-IDS-S1 vector was digested with EcoRV and ApaI to give a partial IDS gene (1233 bp) which was then inserted into the pJK-dhfr-Or2 vector previously treated with the same restriction enzymes, to construct a pJK-dhfr-IDS-S2 vector. In order to introduce a non-coding sequence and a signal sequence to the 5′-terminus, an IDS N1 forward primer (SEQ ID NO: 5) and an IDS 4 reverse primer (SEQ ID NO: 7) were used for PCR with the pJK-dhfr-IDS-S1 vector serving as a template. After starting at 94° C. for 5 min, PCR was performed with 30 cycles of 94° C. for 1 min, 55° C. for 30 sec and 72° C. for 40 sec and finished by extension at 72° C. for 10 min.
The PCR amplification afforded a partial IDS gene that was 448 bp. This gene was used as a template for the PCR which was performed again in the presence of an IDS N2 forward primer (SEQ ID NO: 6) and an IDS 4 reverse primer (SEQ ID NO: 7) under the same conditions as described above. This resulted in the synthesis of a DNA fragment 476 bp long.
Subsequently, the pJK-dhfr-IDS-S2 vector and the recombinant human IDS gene fragment (476 bp) were separately digested with EcoRV. The digests were separated on gel by electrophoresis to obtain the vector and the 476 bp-long IDS fragment. These vector and insert were ligated at 16° C. for 12 hours in the presence of T4 DNA ligase to construct pJK-dhfr-Or2-IDS plasmid. These procedures are illustrated in FIG. 2.
To confirm the construction of the IDS expression plasmid, DH5α was transformed with pJK-dhfr-Or2-IDS and cultured for 24 hours on an LB plate containing ampicillin (50 μg/mL). From the colonies thus formed, a plasmid was isolated and digested to measure the size of the insert. Also, base sequencing was conducted using a T7 primer (SEQ ID NO: 8).
<1-3> Selection of Recombinant Human IDS Expression Cell Line
A. Transfection of CHO-DG44
CHO-DG44 was used as a host cell for expressing the IDS of the present invention. The mutant Chinese hamster ovary cell CHO-DG44 carries a double deletion for the endogenous dhfr (dihydrofolate reductase) gene which encodes DHFR enzyme. The DHFR enzyme is involved in the conversion of folate through dihydrofolate (FH2) into tetrahydrofolate (FH4) which is involved in the de novo synthesis of nucleic acids. The level of dhfr in the cells is dependent on the concentration of MTX. MTX, which is structurally similar to folic acid, a substrate of DHFR, competes with folic acid for binding dihydrofolate reductase, so that most dihydrofolate reductase loses its activity in the presence of MTX. Hence, if cells do not amplify a sufficient amount of dhfr, they die because they cannot synthesize nucleic acids necessary for their life. In contrast, if the amplification is sufficient, the cells can survive under a high concentration of MTX because they are relatively abundant in dhfr. This system may be applied to animal cells to select a transfected cell line which can amplify the dhfr gene and thus a structural gene of interest.
To this end, a dhfr gene was introduced as an amplifiable marker into the IDS expression vector pJK-dhfr-Or2-IDS, constructed in Example 1-2, and gene amplification was conducted using MTX and the dhfr gene.
In this regard, the DG44 cell line (obtained from Dr. Chaisin, Columbia University) was suspended in 10 mL of DMEM/F12 (supplemented with nucleotides and nucleosides, and 10% fetal bovine serum (FBS)) and harvested by spinning at 1000 rpm for 5 min. The cells were inoculated into 50 mL of a culture medium in a T-175 flask and incubated at 37±1° C. in a 5±1% CO2 incubator. One day before transfection, the culture medium for DG44 cells was removed from the T-175 flask and the cells were washed twice with PBS and detached by trypsinization. Then, they were seeded at a density of 5×105 cells into a T-25 flask and cultured at 37±1° C. for 24 hours in a 5±1% CO2 incubator. Bacterial or fungal contamination was examined under an optical microscope while PCR-ELISA was performed to examine whether the cells were contaminated with mycoplasma.
The germ-free DG-44 cells were transfected with the IDS expression vector pJK-dhfr-Or2-IDS, constructed in Example 1-2, using a Lipofectamine kit. In this regard, 5 μg of the expression vector and 50 μL of Lipofectamine were separately diluted in 800 μL of Opti-MEM I, mixed carefully so as not to form bubbles, and left at room temperature for 15 min. Meanwhile, DG44 cells were washed once with sterile PBS and three times with Opti-MEM I. To the DG44 cells were carefully added the DNA-lipofectamine mixture and then 6.4 mL of Opti-MEM before incubation at 37±1° C. for 5 hours in a 5±1% CO2 incubator. Thereafter, the incubation was conducted for an additional 48 hours in the medium supplemented with 8 mL of DMEM/F12 and 1.6 mL of FBS to promote the recovery of cell membranes and the growth of cells.
B. Selection of Geneticin (G418)-Resistant Cell Line
The cultured cells were detached with 0.25% trypsin, counted, and seeded at a density of 5×103 cells/well into 96-well plates containing 100 μL of MEM-alpha medium (supplemented with 10% dialyzed FBS and 550 μg/mL G418) per well. Next day, the same medium was added in an amount of 100 μL/well and the cells were cultured for 2-3 weeks to form colonies. When the cells grew to 50% confluency, the medium was replaced with a fresh one. After maintenance for 3 days, the culture media were collected for enzyme analysis.
The medium was replaced with 200 μL of a fresh medium every three days. On day 3 ̃4 after culturing, non-transfected cells, that is, cells that were not resistant to geneticin started to detach from the bottom of the 96-well plates when observed with an optical microscope. The selected clones were cultured while being sequentially transferred from the 96-well plates to 24-well plates, 6-well plates and 100-mm dishes in the order. When the cells grew to 80 ̃90% confluency in 100-mm dishes, the expression level was measured again. The cells were detached with 0.25% trypsin, counted and plated at a density of 5×105 cells/well/3 mL into 6-well plates, maintained for 3 days and counted. The expression level of the protein was quantitatively analyzed. According to the analysis results, 15 clones were selected.
C. Selection of IDS Expression Cell Line with High Productivity
The 15 selected clones were cultured at an increased concentration of MTX to select cell lines in which IDS was amplified.
In this context, the cells were inoculated at a density of 1×106 cells/100 mm dish/10 mL of a medium containing MTX and cultured to 80 ̃90% confluency. One tenth of the volume of the cell culture was inoculated again into 100 mm dish/10 mL. This sub-culturing process was repeated twice. The cells were allowed to undergo at least three passages so that they were sufficiently adapted to increased MTX concentrations. The concentration of MTX was increased, from 5 nM for the clones selected after conducting an analysis for the first three days, to 20 nM. In each step, the clones adapted to the increased MTX concentration were cultured for three days to measure cell growth rates. IDS expression levels were measured to select cell lines in which the amplification of the IDS gene took place, that is, cell lines in which the recombinant IDS was expressed at a high rate. Of the selected cell lines, NI4 was used in subsequent experiments because it had the highest expression level.
D. Selection of Single Cell by Limiting Dilution
There was the possibility that the cell line NI4 might have become mixed with other cell lines. Hence, the cell line was separated into a single cell line. The N14 clones which survived 20 nM MTX were subcloned through limiting dilution so as to select a desired cell line.
First, NI4 was inoculated at a density of 0.5 cells/well into IMDM medium (Gibco BRL, Cat#12200) in 96-well plates and cultured with the medium replenished every three days. On day three, the plates were observed under a microscope to exclude the wells in which two or more colonies had been formed per well. The wells in which only one colony had formed per well were selected and continued to be cultured. After culturing for 15 days, the cells were sub-cultured to 96-well plates and when cells had grown to 90% confluency, the medium was freshly replenished.
A total of 263 single cell lines were identified from the N14 cell line. Of them, cell line S46 was found to have the highest IDS activity and named NI4-S46.
<1-4> Cell Culture
A. Shake Flask Culture
The NI4-S46 cell line was cultured on a large scale to produce the IDS of the present invention. The cell line was inoculated into an EX-cell 302 serum-free medium (containing glutamine, dextran sulfate, and poloxamer 188 in 125 mL culture flasks and cultured at 37±1° C. in a 5±1% CO2 incubator. Subsequently, the cells were passaged at a ratio of 1:1 ̃1:8 every two to three days using shake flasks. Upon the passage, the culture volume was gradually increased to approximately 2,400 mL. In many shake flasks, the cells were cultured to a level sufficient to be inoculated into a bioreactor.
B. Culture in 30 L Bioreactor (Working Volume 20 L)
When the density of the cells in the shake flasks reached 1.3×106 cells/mL, they were inoculated into a 30 L bioreactor. During cell culturing, the culture conditions were kept at a dissolved oxygen content of 10% or higher, a culture temperature of 37±1° C. and a pH of 7.0±0.2. If necessary, cell samples were taken and observed under a microscope. The cell culture was examined to analyze cell count, cell viability, pH, glucose concentration and glutamine concentration. On the basis of the analysis results, when it was decided that the cells were sufficiently grown, the cells were inoculated into a 150 L bioreactor.
C. Culture in 150 L Bioreactor (Working Volume 100 L)
When the cells in a 30 L bioreactor reached a density of 0.9×106 cells/mL or higher, they were inoculated into a 150 L bioreactor. During cell culturing, the culture condition was kept at a dissolved oxygen content of 10% or higher, a culture temperature of 37±1° C. and a pH of 7.0±0.2. If necessary, cell samples were taken and observed under a microscope. The cell culture was examined to analyze cell count, cell viability, pH, glucose concentration and glutamine concentration. On the basis of the analysis results, when it was decided that the cells were sufficiently grown, the cells were inoculated into a 650 L bioreactor.
D. Culture in 650 L Bioreactor (Working Volume 500 L)
When the cells in a 150 L bioreactor reached a density of 0.9×106 cells/mL or higher, they were inoculated into a 650 L bioreactor. During cell culturing, the culture condition was kept at a dissolved oxygen content of 10% or higher, a culture temperature of 34±1° C. and a pH of 6.9±0.2 for three days and then, at a culture temperature of 32±1° C. and a pH of 6.9±0.2. If necessary, cell samples were taken and observed under a microscope to analyze cell counts, cell viability, pH, glucose concentrations and glutamine concentrations. Depending on the analysis result, glucose and glutamine concentrations were adjusted to continue cell growth. During the culturing, a hydrolysate was added to increase the formylglycine conversion.
<1-5> Purification of IDS
IDS was isolated from the cell culture using a series of the following four chromatographic processes.
A. Harvest and Filtration of Culture Medium
When the cell viability remained in the range of 80 ̃85% 10 days after inoculation into the 650 L bioreactor, culturing was stopped. The cells were harvested from the culture using the Millipore POD filter system and DOHC filter (Millipore) at a pressure of 0.9 bar or less. After the cells were removed, the supernatant was filtered through a pre-filter (Millipore, 0.5±0.2 μm) and a 0.45±0.2 μm filter and recovered in a disposable sterile bag. The harvested culture solution was stored at 2 ̃8° C.
B. Concentration and Diafiltration
The filtrate recovered in A was about 10-fold concentrated using an ultrafiltration system (Tangential Flow Filtration Membrane System). The membrane (cutoff: 30K, Pall) installed inside the ultrafiltration system was washed with WFI (water for injection) at a flow rate of 20 ̃25 L/min and then equilibrated with a buffer (pH 7.0±0.3) containing 20 mM sodium phosphate (sodium dihydrogen phosphate monohydrate and sodium hydrogen phosphate heptahydrate). After equilibration, the filtrate was fed into the membrane while recovering the fractions that did not pass the membrane. Once the recovered volume became about 1/10 of the initial volume of the filtrate, the concentration procedure was stopped. The buffer was consecutively exchanged in a volume three to four times as large as that of the concentrate. If the conductivity and the pH fell within the criteria, the process was stopped. [criteria—conductivity: ≦5.0 mS/cm, pH 7.0±0.2.
C. Anion Exchange Chromatography
To remove media component and various impurities from the concentrate recovered in B, anion exchange chromatography was conducted on a column (GE Healthcare) filled with Q Sepharose resins (GE Healthcare). The column was equilibrated with equilibrium buffer (pH 7.0±0.3) containing 20 mM sodium phosphate (sodium dihydrogen phosphate monohydrate and sodium hydrogen phosphate heptahydrate). The concentrate obtained in B was filtered through a 0.45±0.2 μm filter (Sartorius) and loaded at a flow velocity of 100 ̃120 cm/h into the equilibrated column. After the loading was completed, the column was primarily washed with the equilibrium buffer and then with washing buffer (pH 7.0±0.3) containing sodium chloride. Subsequently, a target protein was eluted with an eluting buffer (pH 7.0±0.3) containing sodium chloride.
D. Hydrophobic Chromatography
To remove the media component and impurities that remained after anion exchange chromatography, hydrophobic chromatography was performed on a column (GE Healthcare) filled with phenyl Sepharose resins (GE Healthcare). The column was equilibrated with equilibrium buffer (pH 6.0±0.3) containing sodium chloride. The eluate obtained in C was filtered through a 0.45±0.2 μm filter (Sartorius) and loaded at a flow velocity of 70 ̃100 cm/h into the equilibrated column. After the loading was completed, the column was washed with the equilibrium buffer. Subsequently, a target protein was eluted with an eluting buffer (pH 5.5±0.2) containing glycerol.
E. Inactivation of Virus by Low pH
Viruses that may be derived from host cells or any material used in the processes carried out were inactivated by a low pH condition. In this regard, the eluate obtained in D was maintained for 2 hours at an acid condition (pH: 3.7±0.05) of which acidity was adjusted with 25% acetic acid. Thereafter, the pH of the eluate was increased to pH: 4.3±0.2 using 0.5 M sodium hydroxide for use in the next process. The inactivation by low pH was conducted at 12±2° C.
F. Cation Exchange Chromatography
IDS is glycoprotein with oligosaccharides, and exists as an isomer that has a different isoelectric point according to the content of sialic acid at the end of the Glycan chain. As oligosaccharides with a negative charge, sialic acid shows a difference in terms of the degree of binding to cation exchange resin according to the content of sialic acid. Using this characterization, cation exchange chromatography was conducted to obtain IDS showing high activity (a high content of formylglycine) with a high content of sialic acid and to remove other impurities [Product impurity (Aggregated IDS, processed IDS), process impurity (Host Cell protein)]. In detail, a column filled with cation exchange CaptoTM MMC resins (GE Healthcare) was equilibrated with glycerol-added equilibration buffer (pH 4.3±0.2). The inactivated eluate obtained in E was filtered through a 0.45±0.2 μm filter (Sartorius) and loaded at a flow velocity of 100 ̃120 cm/h onto the equilibrated column. Subsequently, the column was washed with the equilibration buffer, followed by elution with glycerol-added eluting buffer (pH 5.3±0.2) to give IDS with a high sialic acid content (isoelectric point 3.5 or less), high activity (formylglycine content: 80±15%) and high purity (SE-HPLC, 98% or higher).
G. Affinity Chromatography
Affinity chromatography (Blue SEPHAROSE®, GE Healthcare) was conducted to remove the glycerol used in the cation exchange chromatography and to reduce the volume of the eluate. The eluate obtained in F was filtered through a 0.45±0.2 μm filter (Sartorius) and loaded at a flow velocity of 100 ̃120 cm/h onto a Blue SEPHAROSE® resin-filled column (GE Healthcare) that was previously equilibrated with glycerol-added equilibration buffer (pH 4.5±0.2). After completion of the loading, the column was washed with washing buffer (pH 4.5±0.2) and the target protein was eluted with eluting buffer (pH 6.2±0.2).
H. Concentration and Buffer Exchange
An ultrafiltration system (Tangential Flow Filtration Membrane System) was used to adjust the protein concentration of the eluate obtained in G and to exchange the buffer of the purified protein with formulation buffer. The membrane (cutoff: 10K, Pall) installed inside the ultrafiltration system was washed with WFI (water for injection) at a flow rate of 450 ̃650 mL/min and then equilibrated with a formulation buffer (2.25 g/L sodium dihydrogen phosphate monohydrate, 0.99 g/L sodium hydrogen phosphate heptahydrate, 8 g/L sodium chloride, pH 6.0±0.2) without polysorbate 20, followed by concentrating the target protein. The buffer was consecutively exchanged in a volume three to four times as large as that of the concentrate. If the conductivity and the pH fell within the criteria, the process was stopped. [criteria—conductivity: 15.0±3.0 mS/cm, pH 6.0±0.2]. Adjust the content of the concentrated solution to 4.0±0.5 mg/mL.
I. Nanofiltration
Using a nano filter (NFP, Millipore), nano filtration was performed to remove viruses that might have come from the host cells or any of the materials used. Integrity test for filter is performed after washing the nano filter with water for injection. Once the integrity test was passed, the nanofilter was equilibrated with 1 L of formulation buffer (2.25 g/L sodium dihydrogen phosphate monohydrate, 0.99 g/L sodium hydrogen phosphate, 8 g/L sodium chloride, pH 6.0±0.2) without polysorbate 20. After completion of equilibration, the concentrate obtained in H was passed through the filter at a pressure of about 2 bar to produce a nano-filtrate. After filtration was completed, the filter was washed with the formulation buffer (post wash solution). After combining the nano filtration solution and the post wash solution, protein content is measured.
J. Drug Substance
The protein concentration of the filtrate obtained in I was adjusted with formulation buffer without polysorbate 20. After the addition of polysorbate, the solution was filtered through a 0.2 μm filter to produce a drug substance. The drug substance was aliquoted and stored in a deep freezer (−70±10° C.) until use.
K. Drug Product (Filling, Labeling, Packaging)
The stock stored in a deep freezer was thawed in a water bath maintained at 28±1° C. and diluted to a protein concentration of about 2.05±0.2 mg/mL using formulation buffer (2.25 g/L sodium dihydrogen phosphate monohydrate, 0.99 g/L sodium hydrogen phosphate heptahydrate, 8 g/L sodium chloride, 0.23 g/L polysorbate 20, pH 6.0±0.3) Thereafter, the dilution solution was filtered through a 0.2 μm filter to produce a final bulk solution. This final bulk solution was filled in 6 mL vial with approximately 3.3 g using auto filling. Once an vial inspection test was passed, the vials were packed to produce a drug product.
The procedure from cell line culturing to final product production is illustrated in FIG. 3.
Comparative Example 1: Preparation of ELAPRASE®
ELAPRASE®, commercially available recombinant IDS, was used as a comparative example.
Experimental Example 1: Structural Analysis and Characterization of Inventive IDS
<1-1> Amino Acid Sequencing—Internal Sequencing
Deglycosylated IDS was separated by SDS-PAGE, followed by gel slicing. Then, digests resulting from treatment with various endoproteinases (trypsin, chymotrypsin, AspN, chymotrypsin/trypsin, AspN/trypsin, GluC and GluC/trypsin) were analyzed using MALDI-MS/MS and LC-ESI-MS/MS (FIG. 5). As a result, a total of 525 amino acid sequences were identified. The amino acid sequences coincided with the theoretical sequence of human IDS (FIG. 6).
<1-2> Disulfide Bond Analysis
In a polypeptide, a disulfide bond is a covalent linkage, usually derived by the coupling of two SH groups of cysteine residues, playing an important role in stabilizing the higher structure of proteins. Theoretically, the 525 amino acids of IDS contain six cysteine residues, four of which form disulfide bonds. In this example, the location of cysteine residues responsible for the disulfide bonds of IDS was identified. First, IDS was deglycosylated by treatment with PNGase F to exclude the interference of sugars. In order to prevent the cysteine residues that do not take part in the formation of disulfide bonds from acting as an interfering factor, 4-vinylpyridine was used to convert IDS into a non-reduced sample so that the SH groups are restrained from randomly forming S—S bonds. Meanwhile, the disulfide bonds were cleaved by DTT, followed by blocking with 4-vinylpyridine to give a reduced sample. Trypsin and AspN, selected on the result of Experimental Example 1-3, were applied to the non-reduced and the reduced sample. The peptide fragments thus obtained were separated by RP-HPLC. RP-HPLC chromatograms of the non-reduced and the reduced samples were compared so as to discriminate the peaks that were found in the non-reduced sample, but not in the reduced sample (FIG. 7).
For more exact analysis, fractions at the discriminated peaks were reduced in size by additional treatment with endoproteinases, and the peaks containing disulfide bonds were analyzed using MALDI-MS (FIG. 8).
Peaks with disulfide bonds were again sequence analyzed using MALDI-MS/MS (FIG. 9) to examine the positions of cysteine residues that form disulfide bonds among the 525 IDS amino acid residues. As shown in FIG. 10, disulfide bonds were observed to form between C146-C159 and between C397-C407.
<1-3> Analysis of Formylglycine Content
IDS degrades heparan sulfate and dermatan sulfate, both of which are a kind of glycosaminoglycan (GAG). This degradation activity is not acquired until the cysteine residue at position 59 in the active site (Cys59) is converted into formylglycine (FGly) by post-translational modification. Thus, the degradation activity of IDS was analyzed by examining the post-translational modification of Cys59 to FGly. For this analysis, AQUA (absolute quantification), a quantitative analysis method based on MS (Mass Spectroscopy), was used, in which a radio-labeled synthetic substrate (AQUA peptide) was spiked into a sample. To quantitatively analyze formylglycine at Cys59 position, a serial dilution of AQUA peptide was spiked into a sample and a calibration curve was drawn. Ratios of FGly-type peptide to Cys-type peptide were measured by LC-ESI-MS analysis, and applied to the AQUA calibration curve to calculate the content of formylglycine.
This analysis determined the conversion of Cys59 to FGly at a rate of 80±15%. In consideration of the Cys59 to FGly conversion rate of about 50% in the commercially available agent ELAPRASE® (Elaprase Science Discussion, EMEA, 2007; Genet Med 2006:8(8):465-473), the therapeutic composition comprising the IDS of the present invention and the formulation prepared with the composition is anticipated to have much higher therapeutic activity compared to ELAPRASE®.
<1-4> Identification of Glycosylation Pattern
An assay was performed to examine whether the IDS of the present invention is glycosylated and to identify the glycosylation pattern if any. To this end, IDS was treated with various glycoside hydrolase enzymes, the digests were separated on by SDS-PAGE and their motility patterns were analyzed.
In detail, IDS samples were digested with combinations of the following four glycoside hydrolase enzymes and separated by SDS-PAGE.







TABLE 2







Properties of Sugar Cleaving Enzymes









Function/Property












PNGase F
Cleaves a sugar moiety (N-glycan) from protein



Asn at the cleavage site is converted into Asp


Endo H
Cleaves a sugar moiety (N-glycan) from protein



unlike PNGase F, Endo H acts on oligosaccharides



of high-mannose type and hybrid type


O-Glycosidase
Cleaves a sugar moiety (O-glycan) from protein


Sialidase
Cleaves terminal sialic acid residues of N-glycan



or O-glycan









As can be seen in FIG. 11, the IDS of the present invention was cleaved by PNGase F and Endo H, but not by O-glycosidase, indicating that the IDS of the present invention is an N-glycosylated protein. In addition, the IDS was completely cleaved by PNGase F, but its size reduction was slight upon treatment with Endo H. PNGase F acts on the glycosylation sites of all the three patterns whereas Endo H acts on the glycosylation sites of high-mannose type and hybrid type. Taken together, these results indicate that the IDS contains the three glycosylation patterns complex, high-mannose and hybrid.
<1-5> Analysis of Mannose-6-Phosphate Content
Binding to a M6P receptor on cells, mannose-6-phosphate (M6P) allows IDS to be internalized into cells and thus to hydrolyze heparan sulfate or dermatan sulfate in lysosomes. In this Example, IDS was acid hydrolyzed with trifluoroacetic acid (TFA) and subjected to HPAEC-PAD (Bio-LC) to quantitatively analyze mannose-6-phosphate.
IDS was hydrolyzed with 6.75M TFA and the hydrolysate was analyzed using liquid chromatography (High Performance Anion-Exchange Chromatography with Pulsed Amperometric Detection; HPAEC-PAD). M6P concentration of which was already known was analyzed under the same condition, and molar ratios of M6P to glycoprotein were obtained by comparison of the areas. Analysis was conducted in triplicate. M6P standard materials and M6P composition chromatograms of the IDS are shown in FIG. 12 and the molar ratios of M6P are summarized in Table 3, below.







TABLE 3







Analysis Results for Mannose-6-phosphate Content












M-6-P
Amount
Amount
Ratio M-6-P/



Ret. time
pmol/25 μl
pmol/25 μl
Protein


Run No.
(min)
M-6-P
Protein
(mol/mol)














13
11.25
1320.59
428
3.09


14
11.23
1241.31
428
2.90


15
11.23
1245.83
428
2.91


Average
11.24
1269.25
428
2.97


CV
0.09%
3.51%

0.11









As is understood from the data of Table 3, there are approximately 3 moles of M6P per mole of IDS. From these results, it is inferred that the therapeutic composition comprising the IDS of the present invention and the formulation prepared with the composition have a high ability to catabolize GAG accumulated in lysosomes.
<1-6> Mass Analysis
Masses of glycosylated IDS and deglycosylated IDS were measured using MALDI-TOF-MS. Treatment of glycosylated IDS with PNGase F afforded deglycosylated IDS. MALDI-TOF-MS was performed using Voyager-DE PRO Biospectrometry (Applied Biosystems, USA) coupled with a delayed Extraction laser-desorption mass spectrometer. The instrument was normalized with bovine serum albumin and IgG1. Analysis results are summarized in Table 4, below.







TABLE 4





MALDI-TOF-MSMALDI-TOF-MS Analysis Results of IDS







Glycosylated IDS











Charge
Protein Mass



m/z
(z)
(Da)
Remark





25646
3
76935


38708
2
77414


77360
1
77359


154533
1
77266
dimer


Average

77244 ± 210










Deglycosylated IDS











charge
Protein Mass



m/z
(z)
(Da)
remark





29767
2
59532


34655


PNGase F


59313
1
59312


118706
1
59353
dimer


Average

59399 ± 120













Sample
Molecular Weight







Theoretical
59298 Da



Glycosylated
77244 ± 210 Da



Deglycosylated
59399 ± 120 Da










As apparent from the data of Table 4, the molecular size is 77,244 Da for glycosylated IDS and 59,399 Da for deglycosylated IDS, which is similar to the molecular weight calculated on the basis of the amino acid sequence, which is 59,298 Da.
<1-7> Purity Measurement
The purity of IDS was measured using size exclusion chromatography. Size exclusion chromatography is a chromatographic method in which molecules in solution are separated by their relative molecular weight and shape. In size exclusion chromatography, proteins larger than the pore size of the column cannot penetrate the pore system and pass through the column at once. Subsequently, the analytes with smaller molecular weights or sizes elute later. For this chromatography, Alliance 2695 HPLC system (Waters, Wis., USA) coupled with 2487 UV/VIS detector (Waters, Wis., USA) was employed. Proteins were detected at 214 nm, and analyzed using Empower 2 Software. The analytes were loaded onto a TSK G3000SWXL column linked to a TSK SWXL guard column (Tosoh, Japan). IDS, after being diluted to a concentration of 1.0 mg/mL in a formulation buffer, was loaded in a volume of 10 μL onto the column. They were allowed to flow with mobile phase (20 mM sodium phosphate buffer, 200 mM NaCl, pH 7.0) at a flow rate of 0.5 mL/min for 60 min.
Analysis results are shown in FIG. 13. As can be seen, IDS monomers had a retention time of approximately 16.4 min, and were eluted with 100% purity.
<1-7a> Purity Measurement (2)
Reversed-phase high-performance liquid chromatography (RP-HPLC) involves the separation of molecules on the basis of hydrophobicity. The separation depends on the hydrophobic binding of the solute molecule from the mobile phase to the immobilized hydrophobic ligands attached to the stationary phase.







TABLE 5





RP-HPLC Operation Conditions
















Mobile Phase
A: Water + 0.1% (v/v) TFA



B: Acetonitrile + 0.1% (v/v) TFA


Column
Phenomenex Jupiter C4 (4.6 × 250 mm, 5 μm)


Flow Rate
0.8 mL/min


Temperature
Column: 30° C., Sampler: 4° C.


Injection Volume
10 μL


Detector
214 nm


Run Time
90 min














Gradient
Time
Flow rate
% A
% B






0
0.8
70
30



10
0.8
70
30



70
0.8
30
70



75
0.8
10
90



80
0.8
70
30



90
0.8
70
30









<1-8> Activity Measurement Using Synthetic Substrate
The reaction of IDS with the synthetic substrate (4-methylumbelliferylα-L-idopyranosiduronic acid-2-sulfate sodium salt (4MU-IdoA-2S)) for 4 hours releases the sulfate moiety (primary reaction). After the primary reaction, the addition of recombinant human α-L-iduronidase (rh IDUA) induces a secondary enzymatic reaction with the substrate 4-methylumbellifery-L-iduronide (reactant left after the release of the sulfate moiety in the primary reaction) to separate the 4-methylumbelliferyl moiety from the L-iduronide moiety. Because the remaining 4-methylumbelliferyl is fluorogenic, the activity of IDS was evaluated by measuring the intensity of fluorescence (Ex.355 nm/Em.460 nm). The IDS of the present invention was found to range in specific activity from 19 to 55 nmol/min/μg. The IDS of the present invention was found to range in specific activity from 30.0 to 70.0 nmol/min/μg. This activity indicates that formylglycine exists in the active site of the enzyme as a result of the post-translational modification of the cysteine residue at position 59 in IDS.
<1-8a> Activity Measurement Using Synthetic Substrate (2)
The reaction of IDS with the synthetic substrate (4-methylumbelliferylα-L-idopyranosiduronic acid-2-sulfate sodium salt (4MU-IdoA-2S)) for 90 minutes releases the sulfate moiety (primary reaction). After the primary reaction, the addition of recombinant human α-L-iduronidase (rh IDUA) induces a secondary enzymatic reaction with the substrate 4-methylumbellifery-L-iduronide (reactant left after the release of the sulfate moiety in the primary reaction) to separate the 4-methylumbelliferyl moiety from the L-iduronide moiety. Because the remaining 4-methylumbelliferyl is fluorogenic, the activity of IDS was evaluated by measuring the intensity of fluorescence (Ex.355 nm/Em.460 nm). The IDS was found to range in Km from 170 to 570 μM and in kcat from 4,800 to 16,200 min−1. This activity indicates that formylglycine exists in the active site of the enzyme as a result of the post-translational modification of the cysteine residue at position 59 in IDS.
<1-9> Activity Measurement Using Natural Substrate
In order to determine whether the reaction with the IDS and natural substrate, the sulfate ions released from the substrate (heparin disaccharide) by reaction with IDS were measured. The reaction mixture was loaded onto an ion column (Vydac 302IC) and allowed to flow with the mobile phase of 0.49 g/L phthalic acid at a flow rate of 2 ml/min, during which free sulfate ions were detected at 290 nm in negative mode.
As shown in FIG. 14, the IDS was confirmed to hydrolyze sulfate ion from heparin disaccharide, indicating that the IDS is capable of degrading O-linked sulfate of dermatan sulfate and heparan sulfate in vivo.
<1-10> In Vivo Cellular Uptake Activity
Hunter syndrome (MPS II) is one type of lysosomal storage disorders (LSD); and in enzymatic replacement therapy for the treatment of LSD, IDS must be picked up by cells of a patient and enter into a lysosome to degrade glycosaminoglycans (dermatan sulfate and heparin sulfate).
Binding to M6P receptor on cells, mannose-6-phosphate (M6P) which are located on IDS allow IDS to be internalized into cells. In this Example, IDS was subjected to HPAEC-PAD (Bio-LC) to quantitatively analyze mannose-6-phosphate. As a result, it was confirmed that there is approximately 3.0 moles of M6P per mole of IDS. Also, cellular uptake activities were analyzed by assaying normal fibroblast cells and Hunter syndrome patient cells.
The cellular internalization activity of the IDS was measured using the normal fibroblast cells and Hunter syndrome patient cells. In this regard, normal fibroblast cells and Hunter syndrome patient cells (obtained from Samsung Medical Center, Seoul, Korea) were cultured and allowed to be internalized into cells while they were incubated with various concentrations of IDS at 37° C. for 20 hours in a 5% CO2 incubator. After being harvested, the cells were lyzed, and the level of the IDS internalized into the cells was determined in the lysate.
On the basis of the concentration ratio of internalized IDS to IDS added to the normal fibroblast cells, a Michaelis-Menten graph and a Lineweaver-Burk plot were constructed from which Kuptake (IDS concentration at which the reaction rate is half of the maximum rate achieved at saturating substrate concentrations) was calculated. Kuptake was calculated to be 18.0 nM or less, indicating that IDS is internalized into cells by the binding of the M6P of IDS to M6P receptors on the cell surface (FIG. 15).
Also, the cellular uptake and activity of IDS in Hunter syndrome patient cells as well as normal human fibroblast cells were analyzed. The uptake and activity of the IDS were increased in both the cells, demonstrating that the IDS of the present invention is more efficiently internalized into cells (FIG. 16).
<1-10a> In Vivo Cellular Uptake Activity (2)
The cellular internalization activity of the IDS was measured using the normal fibroblast cells and Hunter syndrome patient cells. In this regard, normal fibroblast cells and Hunter syndrome patient cells (obtained from Samsung Medical Center, Seoul, Korea) were cultured and allowed to be internalized into cells while they were incubated with various concentrations of IDS at 37° C. for 6 hours in a 5% CO2 incubator. After being harvested, the cells were lyzed, and the level of the IDS internalized into the cells was determined in the lysate.
On the basis of the concentration ratio of internalized IDS to IDS added to the normal fibroblast cells, a Michaelis-Menten graph and a Hanes-Woolf plot were constructed from which Kuptake (IDS concentration at which the reaction rate is half of the maximum rate achieved at saturating substrate concentrations) was calculated. Kuptake was calculated between 3.0 nM and 23.0 nM, indicating that IDS is internalized into cells by the binding of the M6P of IDS to M6P receptors on the cell surface (FIG. 15).
Also, the cellular uptake and activity of IDS in Hunter syndrome patient cells as well as normal human fibroblast cells were analyzed. The uptake and activity of the IDS were increased in both the cells, demonstrating that the IDS of the present invention is more efficiently internalized into cells (FIG. 16).
<1-11> Determination of Host Cell-Derived DNA Contents
According to the recommendation from the World Health Organization (WHO), Guidelines on the Quality, Safety, and Efficacy of Biotherapeutic Protein Products Prepared by Recombinant DNA Technology, adopted by the 64th meeting of the WHO Expert Committee on Biological Standardization, 21-25 Oct. 2013, the level of cell-derived and plasmid-derived DNA should be not more than 10 ng per purified dose.
The contents of host cell-derived DNA contents were measured on the IDS composition obtained in Example 1 <1-5>, using a Threshold system (Threshold total DNA assay kit, Molecular Devices Corp). Threshold system is equipment for the determination of total DNA quantity. It is intended for use in screening for total DNA contamination of recombinant DNA. In the first step, DNA was isolated from the proteins in the sample. In the second step, the sample is heat denatured to convert all DNA to the single stranded form. The denatured DNA samples are incubated with the DNA labeling reagent, which contains a conjugated enzyme. In the third step, the labeled DNA is captured onto a membrane by filtration. In the last step, enzyme-catalyzed pH response is measured on captured membranes.
A standard curve was obtained using standard solutions of concentrations of 6.25, 12.5, 25, 50, 100, 200, and 400 pg/ml.
Aliquots of the purified IDS composition obtained in Example <1-5-J> and the zero calibrator were dispensed to a pair of 2 mL sterile Sarstedt microcentrifuge tube with cap, and 50 uL of spike solution (1 ng/mL) was added to one of the tube. 20 uL of Sodium N-Lauroyl Sarcosinate solution to the tube and mix, following by adding 500 uL of NaI solution containing glycogen to the mixture, vortex and then incubate at about 40° C. for about 15 minutes. 900 uL of isopropanol is added to the mixture, vortex and then let stand at room temperature for about 15 minutes, followed by centrifugation to obtain a pellet containing DNA and glycogen.
The pellet is reconstituted using a calibrator buffer (500 uL), and subject the resulting sample to denaturation and labeling. The labeled DNA was captured onto a membrane by and the enzyme-catalyzed pH response was measured on the captured membranes. The host-cell derived DNA was measured in a range of 0-0.03 ng/mg, which is far lower than the limit 1.6 ng/mg set by the FDA.
<1-12> Determination of Host Cell-Derived Protein Contents
The level of host-cell proteins should be not more than parts per million, for biological medicines used chronically over a lifetime (e.g. human insulin, erythropoietin or factor VIII). E.g., TGA Guidance 18. Australian Government, Version 1.0, August 2013).
The contents of host cell-derived protein were measured on the purified IDS composition obtained in Example 1 <1-5>, using two-site immunoenzyme assay (ELISA). Aliquots of the composition obtained in Example 1 were reacted with an affinity purified capture antibody (anti-CHO HCP antibody, Rabbit 3). An IDS-specific HCP assay kit (Young In Frontier, Korea) was used for this purpose, which allows a test performed in microtiter wells coated with an anti-CHO HCP capture antibody. The complex was reacted with anti-CHO HCP antibody (Rabbit 7)-biotin labeled antibody and then reacted with Avidine linked Horse Radish Peroxidase. The sandwich complex was reacted with TMB substrate after the microtiter strips were washed to remove and unbound reactants.
A dilution buffer (10 mg/ml BSA in TBS) was used to dilute the samples. The following reagents were used:
(a) 1× wash buffer

    
    
        Mix 10× wash buffer 100 ml with distilled water 900 ml and make it to 1× washing solution
        Store at 4° C. for 1 month.
    
    


(b) Working secondary antibody solution (Dilution fold may be changed, if necessary)

    
    
        Add secondary antibody/AV-HRP dilution buffer 150 pi to a vial containing freeze-dried secondary antibody and mix well to obtain 100× diluted secondary antibody solution.
        Add secondary antibody solution (100×) 40 uL to secondary antibody/AV-HRP dilution buffer 3,960 uL and mix well.
    
    


(c) Working AV-HRP solution

    
    
        Add AV-HRP concentrated solution (100×) 40 uL to Secondary antibody/AV-HRP dilution buffer 3,960 uL and mix well.
    
    


As standard solutions, solutions containing standard CHO HCP in an amount of 0, 0.78, 1.56, 3.125, 6.25, 12.5, 25, and 50 ng/mL were prepared.
The results show that the host cell derived proteins in the samples were in a range of 0-13.7 ng/mg (=1-13.7 ppm), which is far lower than the limit of 100 ppm set by the FDA.
<1-13> Determination of Sialic Acid Contents
Sialic acid is a generic term for derivatives of neuraminic acid having a nine-carbon backbone, which is a monosaccharide with a complex structure including carboxylate, ketone and acetamide. The presence of carboxylates in sialic acid is of great importance because they are widely distributed in non-reducing terminus of glycoprotein and give acidic characteristics.
The contents of sialic acid of the IDS in the composition obtained in Example 1 <1-5>, were measured. Aliquots of the test composition were diluted with distilled water to a final concentration of 1.0 mg/ml. Standard solutions were prepared by dissolving N-acetylneruaminic acid in distilled water to make 10 mg/ml, and diluting it with distilled water to final concentrations of 0, 20, 40, 60, 80, 100, 1000, and 10,000 ug/ml.
In the first analysis, the amount of sialic acid in IDS was quantified based on the fact that sialic acid causes color formation in the resorcinol method (Seliwanoff's test, FIG. 22). The assay was conducted in Green Cross Corp. A standard sialic acid concentration of which was already known was analyzed by measuring absorbance at 580 nm after reacting with resorcinol to obtain a standard curve. Then, IDS was allowed to react with resorcinol, and sialic acid concentration thereof was analyzed by measuring absorbance at 580 nm. As shown in Table 6, there are approximately 16.5 moles of sialic acid per mole of IDS.
Seliwanoff reaction: 100 ul of standard solutions and test solutions, respectively, were loaded to glass cab tubes, and 1 ml of resorcinol reagent (prepare by mixing hydrochloride acid R1 80 ml, 0.1M cupric sulfate 0.25 ml and 2% resorcinol solution 10 ml, and filling up to 100 ml with distilled water) was added and mixed. The resulting mixtures were incubated at 100-105° C. heating block for about 30 min. and cooled for about 10 min immediately after heat processing.
Extraction: 2 ml of extraction solution (butanol 24 ml and butyl acetate 96 ml) was added to each tube. When layers were completely separated by oxidizing at room temperature for about 30 min, transfer 1.5 ml of the supernatant to 1.5 ml tube and centrifuged for 3 min (12,000 rpm, room temperature). Adjust zero point with ‘standard H’ and the absorbance at 580 nm was measured.
A standard curve for the absorbance values of standard solutions and sialic acid's concentration (ug/ml) in the test solutions from the standard curve.
309 g/mol: Molecular weight of sialic acid
78,000 g/mol: Molecular weight of IDS




  
    Sialic
    ⁢
    
      
    
    ⁢
    
      acid
      ⁡
      
        (
        mol
        )
      
    
  
  =
  
    
      sialic
      ⁢
      
        
      
      ⁢
      acid
      ⁢
      
        
      
      ⁢
      contents
      ⁢
      
        
      
      ⁢
      of
      ⁢
      
        
      
      ⁢
      sample
      ⁢
      
        
      
      ⁢
      
        solution
        ⁡
        
          (
          
            μg
            ⁢
            
              /
            
            ⁢
            mL
          
          )
        
      
      ×
      78000
      ⁢
      
        
      
      ⁢
      g
      ⁢
      
        /
      
      ⁢
      mol
    
    
      sample
      ⁢
      
        
      
      ⁢
      protein
      ⁢
      
        
      
      ⁢
      
        concentration
        ⁡
        
          (
          
            1000
            ⁢
            
              
            
            ⁢
            μg
            ⁢
            
              /
            
            ⁢
            mL
          
          )
        
      
      ×
      309
      ⁢
      
        
      
      ⁢
      g
      ⁢
      
        /
      
      ⁢
      mol
    
  




The results showed that the sialic acid contents in the samples were in a range of 13.5-17.8 mol/mol, falling within the acceptance criteria of 11-20 mol/mol.







TABLE 6







Analysis results for sialic acid (Resorcinol method)











Average



Batch No.
(mol/














20R
707R9001
707R9002
707R9003
707R9004
mol)

















Neu5Ac
15.0
17.2
16.7
16.1
17.6
16.5


(mol/


mol)





(R20: 200 L scale batch for laboratory use, 707R9001~707R9004: GMP 500 L scale batch)






<1-13a> Determination of Sialic Acid Contents (Bio-LC) (2)
In the second analysis, IDS was hydrolyzed in 0.1 N hydrochloric acid (HCl), and then the hydrolysate was analyzed using liquid chromatography (High Performance Anion-Exchange Chromatography with Pulsed Amperometric Detection; HPAEC-PAD). The assay was carried out by Protagen AG. A reference sialic acid concentration of which was already known was analyzed under the same conditions, and molar ratios of sialic acid to glycoprotein were obtained by comparison of the areas. Analysis was conducted in triplicate. Sialic acid reference and sialic acid composition chromatograms of the IDS are shown in FIG. 23 and the molar ratios of sialic acid are summarized in Table 7. As shown in the data there are approximately 14.7 moles of sialic acid per mole of IDS, which is similar to the ratio obtained in the first analysis, i.e., 16.5 moles per mole of IDS.
IDS was hydrolyzed with 0.5M HCl and the hydrolysate was analyzed using liquid chromatography (High Performance Anion-Exchange Chromatography with Pulsed Amperometric Detection; HPAEC-PAD). Sialic acid of known concentrations was analyzed under the same condition, and molar ratios of Sialic acid to glycoprotein were obtained by comparison of the areas.







TABLE 7







Analysis results for sialic acid (Bio-LC method)













Retention
Rel.

Rel.




time
Stand.
Amount
Stand.
Molar ratio


Sample
[min]
Dev.
[pmol/10 μl]
Dev.
(mol/mol)















Neu5Ac
5.82
1.03%
439.16
2.95%
14.68


Neu5Gc
10.72
0.18%
17.84
1.36%
0.60









<1-15> Determination of Oligosaccharide Pattern
The oligosaccharide pattern of the sample was determined using IE-HPLC (Ion Exchange-High Performance Liquid Chromatography). In this test, samples are treated with PNGase F to deglycosylate the proteins in the sample, and then the released glycans are labeled 2-AB (2-aminobenzamide). And 2-AB labeled glycans are analyzed by ion exchange HPLC with a fluorescence detector. A glycoprofiling scheme for antibody and chemistry of 2-AB labeling are shown in FIG. 19.
The sample of the IDS composition obtained in Example 1 <1-5> (after affinity chromatography) was diluted to 1 mg/ml using water. 45 ul of 1 mg/ml samples and 5 ul of 10× denaturing buffer were mixed and allowed to stand at 50° C. for about 10 minutes, and 1 uL of PNGase F was added and incubate the mixture at 37° C. for about 6 hours. Glycans are isolated through solid phase extraction and label the isolated glycans with 2-AB dye. Oligosaccharide pattern was determined using GlycoSep C HPLC column (mobile phase A: 200 ml of 100% acetonitrile and 800 ml of filtered water; mobile phase B: 40% acetonitrile (500 ml) and 500 mM ammonium formate (500 ml) were mixed and adjusted to pH 4.5 using formic acid).
The results are shown in FIG. 20. As shown in FIG. 20, the IDS composition obtained in Example 1 meets the oligosaccharide pattern acceptance criteria.
<1-14> Determination of IDS Charge Variance
Proteins migrate to the negative pole when the pH is higher than the isoelectric point (pH and pI at which the total electric charge becomes 0) and to the positive pole when the pH is lower than the isoelectric point. There are two types of ion exchanger used for ion exchange chromatography: cation exchangers and anion exchangers, to each of which counter ions (Na+, Cl−, etc.) are electrostatically bound. Therefore, when the target protein is a basic protein that migrates to the positive pole, it is bound to a cation exchanger with a negative electric charge. When it is an acidic protein that migrates to the negative pole, it is bound to an anion exchanger with a positive electric charge. Bond strength increases according to the size of the total electric charge of the protein. When the ion concentration (salt concentration) of the elution buffer is gradually increased, the bound proteins are eluted in order of weakest to strongest bonds.
In this test, a purity of the IDS obtained in Example 1 <1-5> (after affinity chromatography) and ELAPRASE®, a commercially available therapeutic agent for Hunter syndrome, were measured using Ion Exchange High performance Liquid Chromatography (IE-HPLC). A formulation buffer (as a blank formulation) was prepared, which contains 950 mL of ultrapure distilled water, 0.22 g of polysorbate 20, 2.25 g of sodium phosphate monobasic monohydrate, 0.99 g of sodium phosphate dibasic heptahydrate, and 8 g of sodium chloride, pH 6.0).
The IE-HPCL operation conditions are shown in Table 8 below:







TABLE 8





IE-HPLC Operation Conditions
















Mobile Phase
A: 20 mM Bis-Tris, pH 7.0



B: 20 mM Bis-Tris + 0.5M sodium chloride, pH 7.0


Column
TOSOH SuperQ-5PW (7.5 × 75 mm, 10 um)


Flow Rate
0.5 mL/min


Temperature
Column: 30° C., Sampler: 4° C.


Injection Volume
100 μL


Detector
280 nm


Run Time
70 min














Gradient
Time
Flow rate
% A
% B






0
0.5
70
30



10
0.5
70
30



45
0.5
0
100



50
0.5
0
100



55
0.5
70
30



70
0.5
70
30









The results are shown in FIGS. 21(A) and 21(B). The results in FIGS. 21(A) and 21(B) show that the IDS obtained by a method according to an embodiment of the invention, which shows a single peak, is surprisingly improved purity compared to ELAPRASE® which show multiple peaks.
<1-14A> Isoelectric Point Analysis
The purpose of this test is to confirm isoelectric point of IDS by using vertical isoelectric focusing technique.
Various amounts of electrical charge carried by proteins can be used to separate proteins based on the charge that they carry when an electrical field is applied. Due to its amphotropic nature, a protein has a net negative charge when the pH is greater than pI, and a protein has a net positive charge when the pH is smaller than pI. Thus, when a strong electrical force is applied to an established pH gradient increasing from anode to cathode, and a protein migrate according to the gradient until the protein reaches the pH region that corresponds to its pI. This assay was conducted to analyze isoelectric point by using a 2D concentration gradient.
As a result, the IDS showed a band within the pH range of 3.5 or lower (FIG. 24).
Experimental Example 2: Clinical Analysis for Effect of IDS
Thirty one patients with Hunter syndrome were divided into three groups, administered with the IDS of the present invention and analyzed for parameters associated with Hunter syndrome. ELAPRASE®, a commercially available therapeutic agent for Hunter syndrome, was used as a positive control.
<2-1> Change in Urine GAG Level (Primary Check Parameter for Validity Test)
The three groups of Hunter syndrome patients were administered for 24 weeks with ELAPRASE® (0.5 mg/kg) and the IDS of the present invention (0.5 mg/kg and 1.0 mg/kg), and urine GAG (Glycosaminoglycan) levels were measured as reported previously (Conn. Tissue Res. Vol. 28, pp 317-324, 1990; Ann. Clin. Biochem. Vol. 31, pp 147-152, 1994). Measurements are summarized in Table 9, below.







TABLE 9







Change in Urine GAG Level with IDS Administration











ELAPRASE ®
Inventive IDS
Inventive IDS


Group
(0.5 mg/kg)
(0.5 mg/kg)
(1.0 mg/kg)





Change in urine
−18.7
−29.5
−41.1


GAG level (%)









In Hunter syndrome patients, as shown in Table 9, urine GAG levels were decreased by 18.7% upon the injection of ELAPRASE®, but by 29.5% upon the injection of the IDS of the present invention at the same dose. In addition, when injected at a dose of 1.0 mg/kg, the IDS of the present invention reduced the urine GAG level by as much as 41.1%. These results demonstrate that the IDS of the present invention is effectively therapeutic for Hunter syndrome, a disease caused as a result of the accumulation of GAG.
<2-2> 6-MWT (6 Minute Walking Test) Change (Secondary Checking Parameter for Validity Test)
After Hunter syndrome patients were administered with ELAPRASE® and the IDS of the present invention for 24 weeks, the distances which they walked for 6 minutes were measured according to the method described in AM. J. Respir. Crit. Care. Med., Vol 166, pp 111-117, 2002. The results are given in Table 10, below.







TABLE 10







6-MWT Test Results











ELAPRASE ®
Inventive IDS
Inventive IDS


Group
(0.5 mg/kg)
(0.5 mg/kg)
(1.0 mg/kg)





6-MWT Distance (m)
5.9
67.6
52.8


6-MWT Change (%)
1.3
18.2
13.4









As shown in Table 10, the 6-WMT change was merely 1.3% for the patients administered with ELAPRASE®, but increased to 18.2% for the patients administered with the same dose of the IDS of the present invention. Hunter syndrome patients have trouble walking due to contracture. However, the IDS of the present invention improves the symptoms and thus is effective for the treatment of Hunter syndrome.
<2-3> Efficacy and Toxicity Tests in Mouse Model
Efficacy and toxicity tests of GC1111 of the present invention were conducted using mouse model and the results are summarized in FIG. 25A-FIG. 25F and Table 11. Table 11 shows that GC1111 is taken into the cells faster than ELAPRASE® based on in vitro test results and toxicity test results of GC1111 and ELAPRASE®.














TABLE 11













Terminal




Test
IV
Cmax
AUClast
T1/2
MRTlast



Item
(n = 3)
(ng/ml)
(ng * h/ml)
(h)
(h)







GC1111
1.5 mg/kg
2478.03
1043.73
2.47
0.78



ELPRASE ®

3184.67
1743.8
1.68
1.07













GC1111 uptake into the cell takes place at a



faster rate than that of Elaprase based on in



vitro test results









Toxicity
GC1111
ELAPRASE ®*


test


Single-dose
0/5/10/20 mg/kg
Same as left


toxicity in


rats


Single-dose
No abnormal clinical signs were
Same as left


toxicity in
observed


monkeys and


safety


pharmacology


4 wk repeated

Not conducted


toxicity


test in


monkeys


26 wk
0/0.5/2.5/12.5 mg/kg
0/0.5/2.5/12.5 mg/kg


repeated
NOEL: 12.5 mg/kg
Histopathologic


toxicity
Histopathologic
diagnosis


test in
diagnosis
One subject from


monkeys
No abnormal clinical
high-dose group: liver



signs were observed
granuloma observed



Immunogenicity
One subject from



diagnosis
intermediate-dose



Some (2 subjects) were
group: Some



test positive after 13 wk
histiocytosis was seen



26 All subjects were
in mesenteric lymph



test negative after 26 wk
nodes




No other abnormal




clinical signs were




observed




Immunogenicity diagnosis




Antibodies were




formed in 2 out of 4




subjects from 2.5 mg/kg




group, and 4 out




of 6 subjects from




12.5 mg/kg group, but




no effect when drug was exposed




in blood


Reproductive
0/0.5/1.5/5 mg/kg
Same as left


toxicity
No abnormal clinical


test in rats
signs were observed





*Reference for Elaprase non-clinical studies: FDA BLA (Biologics License Applications)






<2-4> Change in Liver Volume (Secondary Check Parameter for Validity Test): Liver Volume
Hunter syndrome patients were administered for 24 weeks with ELAPRASE® and GC1111, and their liver volume was measured by liver ultrasonography, and the results were evaluated by comparing with baseline values.
*Hepatomegaly was observed in Hunter syndrome patients due to accumulation of GAG. The results are shown in Table 12.










TABLE 12






ELAPRASE ®_0.5
GC1111_0.5
GC1111_1.0


Group
mg/kg
mg/kg
mg/kg


















Change in liver
−258
−110
−195.5


volume(vol, cc)


Change in liver
−14.6
−6.2
−8.5


volume(rate, %)









<2-5> Change in Urine GAG Level (Secondary Check Parameter for Validity Test)
Hunter syndrome patients were administered for 24 weeks with ELAPRASE® and GC111, and their urine GAG levels were measured, and evaluated by comparing with baseline values.
*Urinary GAG was detected from Hunter syndrome patients because degradation of GAG did not take place due to iduronate-2-sulfatase deficiency. The results are shown in Table 13.










TABLE 13






ELPRASE ® 0.5
GC1111_0.5
GC1111_1.0


Group
mg/kg
mg/kg
mg/kg







Change in urine
−23.8
−49.6
−50.2


GAG(mg GAG/g


Creatinine)









<2-6> Change in LV End Diastolic, Systolic Volume (Secondary Check Parameter for Validity Test): Contraction and Relaxation of Heart
Hunter syndrome patients were administered with ELAPRASE® and GC 1111 for 24 weeks, and LV end diastolic and systolic volumes were measured by using echocardiography, and the results were evaluated by comparing with baseline values.
*Cardiomegalia was observed in Hunter syndrome patients. Increased diastolic volume and decreased systolic volume indicate an improved myocardial contractility. The results are shown in Table 14.










TABLE 14






ELPRASE ®_0.5
GC1111_0.5
GC1111 1.0


Group
mg/kg
mg/kg
mg/kg


















Change in LV end
0.6
5.8
5


diastolic volume


(vol, cc)


Change in LV end
1.7
9.1
6.9


diastolic volume


(rate, %)


Change in LV end
−3.3
−1.2
3.2


systolic volume


(vol, cc)


Change in LV end
−17.2
−5.7
10.8


systolic volume


(rate, %)









<2-7> Change in LV Mass Index (Secondary Check Parameter for Validity Test): Hypertrophic Myocytes
Hunter syndrome patients were administered for 24 weeks with ELAPRASE® and GC1111, and LV mass indices were measured by using echocardiography, and the results were evaluated by comparing with baseline values.
*The degree of hypertrophic myocytes was analyzed by using LV mass index. The results are shown in Table 15.










TABLE 15






ELPRASE ®_0.5
GC1111_0.5
GC1111_1.0


Group
mg/kg
mg/kg
mg/kg







Change in LV
−0.9
−1.9
−0.6


mass index


(g/m2.7)


Change in LV
−1.7
−2.9
−0.6


mass index (%)









<2-8> Change in LV Ejection Fraction (Secondary Check Parameter for Validity Test): Cardiac Function
Hunter syndrome patients were administered for 24 weeks with ELAPRASE® and GC1111, and their LV ejection fractions were measured by echocardiography, and the results were evaluated by comparing with baseline values. The results are shown in Table 16.










TABLE 16






ELPRASE ®_0.5
GC1111_0.5
GC1111_1.0


Group
mg/kg
mg/kg
mg/kg


















Change in LV
1.5
3.6
−0.6


ejection


fraction (%)


Change in LV
2
5
−1


ejection


fraction (%)









<2-9> Change in Absolute FVC (Secondary Check Parameter for Validity Test): Pulmonary Function During Respiration
After Hunter syndrome patients were administered with ELAPRASE® and GC1111 for 24 weeks, absolute FVC was measured by using pulmonary function test, and the results were evaluated by comparing with base line values.
*Hunter syndrome patients experience narrowed respiratory tract due to GAG accumulation in respiratory tract; in severe cases, respiratory obstruction occurs and tracheotomy must be performed. The results are shown in Table 17.










TABLE 17






Elprase ®_0.5
GC1111_0.5
GC1111_1.0


Group
mg/kg
mg/kg
mg/kg


















Change in
0
0.1
0.2


absolute FVC (L)


Change in
0
12.6
17


absolute FVC (%)









<2-10> Safety Evaluation
1) Adverse Drug Reaction (ADR)

    
    
        In Elaprase®_0.5 mg/kg group, 2 of 11 subjects experienced a total of 19 adverse drug reactions.
        In GC1111_0.5 mg/kg group, 1 of 10 subjects experienced a total of 4 adverse drug reactions.
        In GC1111_1.0 mg/kg group, 2 of 10 subjects experienced a total of 3 adverse drug reactions.
    
    


*All the adverse drug reactions observed were mild symptoms as expected, and these ADRs were controllable by discontinuation of drug at lower and less frequent dosing regimens.
2) Immunogenicity
Three groups of Hunter syndrome patients were administered with GCIII for 24 weeks and immunogenicity test was performed. As a result, no changes were observed in the status on prevalence of GC1111 antibodies and neutralizing antibodies in Hunter syndrome patients before and after the administration.

## Claims

1. A method for preparing a composition comprising an iduronate-2-sulfatase (IDS) having the amino acid sequence of SEQ ID NO: 1, wherein a molar ratio of the IDS of which amino acid at position 59 in the SEQ ID NO: 1 is formylglycine (FGly) is 65% or higher of the total amount of the IDS in the composition, said method comprising:
(a) subjecting a culture of a host cell to an anion exchange chromatography, wherein the host cell is transfected with a gene encoding an IDS of SEQ ID NO: 1 and the culture contains the IDS, comprising eluting the IDS with a first elution buffer of pH 5.5-7.5;
(b) subjecting the eluant obtained in (a) to a hydrophobic chromatography, comprising eluting the IDS with a second elution buffer of pH 5.0-7.0; and
(c) subjecting the eluant obtained in (b) to a cation exchange chromatography, comprising eluting the IDS with a third elution buffer of pH 4.0-6.0 to obtain the composition.

2. The method of claim 1, wherein the host cell is a Chinese hamster ovary cell.

3. The method of claim 1, wherein the IDS is a recombinant human IDS.

4. The method of claim 1, further comprising a step of lowering pH of the eluant obtained in step (b) to a range of pH 3.0-4.0.

5. The method of claim 1, further comprising
(d) subjecting the eluant obtained in (c) to an affinity chromatography, comprising eluting the IDS using a fourth elution buffer of pH 6.0-8.0.

6. The method of claim 1, wherein the first elution buffer comprises sodium chloride.

7. The method of claim 1, wherein the second elution buffer contains glycerol.

8. The method of claim 1, wherein the third elution buffer contains glycerol.

9. The method of claim 1, wherein the composition comprising the IDS has a host cell derived DNA content of 0.1 ng/mg or less based on the total amount of the composition.

10. The method of claim 1, wherein the composition comprising the IDS has a host cell derived protein content of 20 ng/mg or less based on the total amount of the composition.

11. The method of claim 1, wherein the composition comprising the IDS has an isoelectric point of 3.5 or less.

12. The method of claim 1, wherein the molar ratio of the IDS of which amino acid at position 59 in the SEQ ID NO: 1 is FGly is 75% or higher of the total amount of the IDS in the composition.

13. The method of claim 1, wherein a purity of the IDS in the composition is 98% or higher, determined by SE-HPLC.

14. A composition comprising a purified recombinant human iduronate-2-sulfatase (IDS) having the amino acid sequence of SEQ ID NO: 1, wherein a molar ratio of the IDS in which the amino acid residue at position 59 in the IDS amino acid sequence is formylglycine (FGly) is 65% or higher, and wherein the composition contains 20 ng/mg or less of host cell derived proteins, based on the total amount of the composition.

15. The composition of claim 14, wherein the molar ratio of the IDS in which the amino acid residue at position 59 is FGly is 75% or higher.

16. The composition of claim 14, which has an isoelectric point of 3.5 or less.

17. A method for producing a formulation comprising an iduronate-2-sulfatase (IDS) having the amino acid sequence of SEQ ID NO: 1, wherein a molar ratio of the IDS of which amino acid at position 59 in the SEQ ID NO: 1 is formylglycine (FGly) is 65% or higher of the total amount of the IDS in the composition, said method comprising:
(a) subjecting a culture of a host cell to an anion exchange chromatography, wherein the host cell is transfected with a gene encoding an IDS of SEQ ID NO: 1 and the culture contains the IDS, comprising eluting the IDS with a first elution buffer of pH 5.5-7.5;
(b) subjecting the eluant obtained in (a) to a hydrophobic chromatography, comprising eluting the IDS with a second elution buffer of pH 5.0-7.0; and
(c) subjecting the eluant obtained in (b) to a cation exchange chromatography, comprising eluting the IDS with a third elution buffer of pH 4.0-6.0 to obtain a purified IDS; and
(d) combining the purified IDS with a pharmaceutically acceptable carrier to obtain the formulation.

18. The method of claim 17, wherein the pharmaceutically acceptable carrier is a buffer comprising a distilled water, polysorbate 20, sodium phosphate monobasic monohydrate, sodium phosphate dibasic heptahydrate, and sodium chloride.

19. The method of claim 17, wherein the formulation further comprises a buffer containing a distilled water, polysorbate 20, sodium phosphate monobasic monohydrate, sodium phosphate dibasic heptahydrate, and sodium chloride.

20. The method of claim 1, wherein the first elution buffer in step (a) has a pH of 7.0±0.3.

21. The method of claim 1, wherein the second elution buffer in step (b) has a pH of 5.5±0.2.

22. The method of claim 1, wherein the third elution buffer in step (c) has a pH of 5.3±0.2.

23. The method of claim 3, wherein the pH of the eluant obtained in step (b) is lowered to 3.7±0.05.

24. The method of claim 4, wherein the fourth elution buffer has a pH of 6.2±0.2.

25. The method of claim 17, wherein the first elution buffer in step (a) has a pH of 7.0±0.3.

26. The method of claim 17, wherein the second elution buffer in step (b) has a pH of 5.5±0.2.

27. The method of claim 17, wherein the third elution buffer in step (c) has a pH of 5.3±0.2.