ARS HomeMidwest AreaWest Lafayette, IndianaCrop Production and Pest Control ResearchPeople

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- Projects Fungal Host-Pathogen Interactions and Disease Resistance in Cereal CropsIn-House Appropriated (D) Accession Number:441790Institutional Biological Safety Committee (IBC) Agreement - Purdue UniversityNon-Funded Cooperative Agreement (N) Accession Number:442029Tar Spot of Corn: Characterizing the Ecology and Epidemiology of an Understudied and High-Profile DiseaseNon-Assistance Cooperative Agreement (S) Accession Number:438887Functional Analysis of Genes in the Wheat Pathogen Zymoseptoria TriticiNon-Assistance Cooperative Agreement (S) Accession Number:438889
- Publications - (Clicking on the reprint icon  will take you to the publication reprint.)  
- Loop-mediated isothermal amplification (LAMP) for the detection and quantification of fungal phytopathogens -(Book / Chapter)     
- Differences among fungal microbiomes associated with tar spot of corn in Ecuador, Guatemala, and Indiana -(Abstract Only)   Sic, W., Gribskov, M., Acosta, A., Cruz, A., Cruz, C.D., Goodwin, S.B. 2024. Differences among fungal microbiomes associated with tar spot of corn in Ecuador, Guatemala, and Indiana. Meeting Abstract. https://doi.org/na.   
- Mechanisms of infection and response of the fungal wheat pathogen Zymoseptoria tritici during compatible, incompatible and non-host interactions -(Abstract Only)   Gomez, S.V., Million, C.R., Jaiswal, N., Gribskov, M., Helm, M.D., Goodwin, S.B. 2024. Mechanisms of infection and response of the fungal wheat pathogen Zymoseptoria tritici during compatible, incompatible and non-host interactions. Fungal Genetics Conference Proceedings. ABSTRACT.   
- Comparing tar spot epidemics in high-risk areas in the U.S. and Honduras  -(Peer Reviewed Journal)   Gonhora-Canul, C., Puerto, C., Jimenez, F., Telenko, D.E., Kleczewski, N.M., Rosas, J., Avellaneda, C., Sanders, A., Goodwin, S.B., Dalla-Lana, F., Cruz, C.D. 2024. Comparing tar spot epidemics in high-risk areas in the U.S. and Honduras. Canadian Journal of Plant Pathology. https://doi.org/10.1080/07060661.2023.2300077.   
- Genetic architecture of adult-alant resistance to stripe rust in a bread wheat (Triticum aestivum L.) association panel -(Peer Reviewed Journal)   Atsbeha, G., Mekonnen, T., Kebede, M., Haileselassie, T., Goodwin, S.B., Tesfaye, K. 2023. Genetic architecture of adult-alant resistance to stripe rust in a bread wheat (Triticum aestivum L.) association panel. Frontiers in Plant Science. https://doi.org/fpls.2023.1256770.   
- Identification and Characterization of Candidate Effectors from the Wheat Pathogen Zymoseptoria tritici -(Abstract Only)   Gomez, S., Million, C., Jaiswal, N., Helm, M.D., Goodwin, S.B. 2023. Identification and Characterization of Candidate Effectors from the Wheat Pathogen Zymoseptoria tritici. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.   
- Tar Spot Disease Severity Influences Phyllosphere-Associated Bacterial and Fungal Microbiomes -(Proceedings)   Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. Tar Spot Disease Severity Influences Phyllosphere-Associated Bacterial and Fungal Microbiomes. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.   
- New quantitative trait loci (QTL) for resistance to tar Spot in maize -(Proceedings)   Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. New quantitative trait loci (QTL) for resistance to tar Spot in maize. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.   
- Combining Convolutional Neural Network (CNN) with a Stromata Contour Detection Algorithm (SCDA v1.0) to Detect and Quantify Tar Spot of Corn -(Proceedings)   Lee, D., Na, D., Goodwin, S.B., Lee, J., Cruz, C. 2023. Combining Convolutional Neural Network (CNN) with a Stromata Contour Detection Algorithm (SCDA v1.0) to Detect and Quantify Tar Spot of Corn. International Congress of Plant Pathology Abstracts and Proceedings.   
- Diagnosis of tar spot of corn caused by Phyllachora maydis using Loop-Mediated Isothermal Amplification (LAMP) and conventional PCR -(Proceedings)   Sic, W., Gomez, S., Cruz, C., Goodwin, S.B. 2023. Diagnosis of tar spot of corn caused by Phyllachora maydis using Loop-Mediated Isothermal Amplification (LAMP) and conventional PCR. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.   
- The utility of proximal sensing and deep learning in the detection and characterization of tar spot epidemics on corn in the United States -(Proceedings)   Lee, D., Na, D., Gongora, C., Goodwin, S.B., Lee, J., Cruz, C.D. 2023. The utility of proximal sensing and deep learning in the detection and characterization of tar spot epidemics on corn in the United States. Plant Pathology International Congress. ABSTRACT.   
- Monitoring tar spot disease at different canopy and temporal levels using aerial multispectral imaging and machine learning -(Abstract Only)   Zhang, C., Lane, B., Fernandez-Campos, M., Cruz-Sancan, A., Lee, D., Gongora-Canul, C., Ross, T.J., Da Silva, C.R., Telenko, D.E., Goodwin, S.B., Scofield, S.R., Oh, S., Jung, J., Cruz, C. 2023. Monitoring tar spot disease at different canopy and temporal levels using aerial multispectral imaging and machine learning. American Phytopathological Society Abstracts. ABSTRACT.   
- Identification and Characterization of Candidate Effectors from the Wheat Pathogen Zymoseptoria tritici -(Abstract Only)   Gomez, S., Million, C., Jaiswal, N., Helm, M.D., Goodwin, S.B. 2023. Identification and Characterization of Candidate Effectors from the Wheat Pathogen Zymoseptoria tritici. International Congress on Molecular Plant-Microbe Interactions. ABSTRACT.   
- Assessment of symptom induction via artificial inoculation of the obligate biotrophic fungus Phyllachora maydis (Maubl.) on corn leaves  -(Peer Reviewed Journal)   Gongora-Canul, C., Jimenez-Beitia, F.E., Puerto-Hernandez, C., Avellaneda, M.C., Kleczewski, N.M., Telenko, D.E., Shim, S., Solorzano, J.E., Goodwin, S.B., Scofield, S.R., Cruz, C.D. 2023. Assessment of symptom induction via artificial inoculation of the obligate biotrophic fungus Phyllachora maydis (Maubl.) on corn leaves. BMC Research Notes. 16. Article 69. https://doi.org/10.1186/s13104-023-06341-y.   
- Genetic dissection using a nested-association mapping (NAM) population reveals quantitative trait loci (QTL) conferring resistance to Tar Spot in maize -(Abstract Only)   Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. Genetic dissection using a nested-association mapping (NAM) population reveals quantitative trait loci (QTL) conferring resistance to Tar Spot in maize. Maize Genetics Conference Abstracts. ABSTRACT.   
- Identification and initial characterization of effector candidate genes in the wheat fungus Zymoseptoria tritici expressed during infection -(Abstract Only)   Gomez, S.V., Million, C., Helm, M.D., Jaiswal, N., Goodwin, S.B. 2023. Identification and initial characterization of effector candidate genes in the wheat fungus Zymoseptoria tritici expressed during infection. European Conference on Fungal Genetics Proceedings. ABSTRACT.   
- A thousand-genome panel retraces the global spread and climatic adaptation of a major crop pathogen  -(Peer Reviewed Journal)   Feurtey, A., Lorrain, C., McDonald, M.C., Milgate, A., Solomon, P.S., Warren, R., Puccetti, G., Scalliet, G., Torriani, S.F.F., Gout, L., Marcel, T.C., Suffert, F., Alassimone, J., Lipzen, A., Yoshinaga, Y., Daum, C., Barry, K., Grigoriev, I.V., Goodwin, S.B., Genissel, A., Seidel, M.F., Stukenbrock, E.H., Lebrun, M.-H., Kema, G.H.J., McDonald, B.A., Croll, D. 2023. A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen. Nature Communications. 14. Article 1059. https://doi.org/10.1038/s41467-023-36674-y.   
- Comparative secretome analysis of Zymoseptoria tritici isolates and Dothideomycete species to identify conserved secreted effector proteins -(Abstract Only)   Gomez, S., Goodwin, S.B., Gribskov, M. 2023. Comparative secretome analysis of Zymoseptoria tritici isolates and Dothideomycete species to identify conserved secreted effector proteins. Plant and Animal Genome 30. 13-18 Jan 2023, San Diego, CA.   
- Monitoring tar spot disease at different canopy and temporal levels using aerial multispectral imaging and machine learning  -(Peer Reviewed Journal)   Zhang, C., Lane, B., Fernandez-Campos, M., Cruz-Sancan, A., Lee, D.-Y., Gongora-Canul, C., Ross, T.J., Da Silva, C.R., Telenko, D.E.P., Goodwin, S.B., Scofield, S.R., Oh, S, Jung, J., Cruz, C.D. 2023. Monitoring tar spot disease in corn at different canopy and temporal levels using aerial multispectral imaging and machine learning. Frontiers in Plant Science. 13. Article 1077403. https://doi.org/10.3389/fpls.2022.1077403.   
- Forest health in the Anthropocene: the emergence of a noveltree disease is associated with poplar cultivation  -(Peer Reviewed Journal)   Feau, N., Dhillon, B.D., Sakalidis, M., Dale, A.L., Søndreli, K.L., Goodwin, S.B., LeBoldus, J.M., Hamelin, R.C. 2023. Forest health in the Anthropocene: The emergence of a novel tree disease is associated with poplar cultivation. Philosophical Transactions of the Royal Society B. 378: 20220008. https://doi.org/10.1098/rstb.2022.0008.   
- The parental inbred lines of the Nested Association Mapping (NAM) population of corn show sources of resistance to tar spot in northern Indiana  -(Peer Reviewed Journal)   Singh, R., Shim, S., Telenko, D., Goodwin, S.B. 2023. Parental inbred lines of the Nested Association Mapping (NAM) population of corn show sources of resistance to tar spot in northern Indiana. Plant Disease. 107(2):262-266. https://doi.org/10.1094/PDIS-02-22-0314-SC.   
- Candidate effector proteins from the maize tar spot pathogen Phyllachora maydis localize to diverse plant cell compartments  -(Peer Reviewed Journal)   Helm, M.D., Singh, R., Hiles, R., Jaiswal, N., Myers, A., Iyer-Pascuzzi, A., Goodwin, S.B. 2023. Candidate effector proteins from the maize tar spot pathogen Phyllachora maydis localize to diverse plant cell compartments. Phytopathology. 112(12):2538-2548. https://doi.org/10.1094/PHYTO-05-22-0181-R.   
- Candidate effector proteins from the maize tar spot pathogen Phyllachora maydis localize to diverse plant cell compartments -(Abstract Only)   Helm, M.D., Singh, R., Hiles, R., Myers, A., Iyer-Pascuzzi, A.S., Goodwin, S.B. 2022. Candidate effector proteins from the maize tar spot pathogen Phyllachora maydis localize to diverse plant cell compartments. American Phytopathological Society Abstracts. Plant Health 2022. 6-10 Aug 2022, Pittsburgh, PA.   
- Exploring the corn microbiome: a detailed review on current knowledge, techniques, and future direction  -(Peer Reviewed Journal)   Singh, R., Goodwin, S.B. 2022. Exploring the corn microbiome: A detailed review on current knowledge, techniques, and future direction. Phytofrontiers. 2:158-175. https://doi.org/10.1094/PHYTOFR-04-21-0026-RVW.   
- Loop-mediated isothermal amplification for detection of plant pathogens in wheat (Triticum aestivum)  -(Review Article)   Gomez-Gutierriez, S.V., Goodwin, S.B. 2022. Loop-mediated isothermal amplification for detection of plant pathogens in wheat (Triticum aestivum). Frontiers in Plant Science. 13. Article 857673. https://doi.org/10.3389/fpls.2022.857673.   
- SLAG: A program for seeded local assembly in complex genomes  -(Peer Reviewed Journal)   Crane, C.E., Nemacheck, J.A., Subramanyam, C.F., Williams, S.N., Goodwin, S.B. 2022. SLAG: A program for seeded local assembly in complex genomes. Molecular Ecology Resources. 22:596–616. https://doi.org/10.1111/1755-0998.13580.   
- Contour-based detection and quantification of tar spot stromata using RGB imagery  -(Peer Reviewed Journal)   Lee, D., Na, D., Gongora-Canul, C., Baireddy, S., Lane, B., Cruz, A.P., Fernandez-Campos, M., Kleczewski, N.M., Telenko, D., Goodwin, S.B., Delp, E.J., Cruz, C. 2021. Contour-based detection and quantification of tar spot stromata using RGB imagery. Frontiers in Plant Science. 12:675975. https://doi.org/10.3389/fpls.2021.675975.   
- Genome-Wide Association Study reveals novel genetic loci for quantitative resistance to Septoria tritici blotch in wheat (Triticum aestivum L.)  -(Peer Reviewed Journal)   Mekonnen, T., Sneller, C.H., Haileselassie, T., Ziyomo, C., Bekele, A.G., Goodwin, S.B., Lule, D., Tesfaye, K. 2021. Genome-Wide Association Study reveals novel genetic loci for quantitative resistance to Septoria tritici blotch in wheat (Triticum aestivum L.). Frontiers in Plant Science. 12:671323. https://doi.org/10.3389/fpls.2021.671323.   
- Advances in understanding the epidemiology of Septoria tritici blotch in cereals -(Book / Chapter)   Goodwin, S.B. 2021. Advances in understanding the epidemiology of Septoria tritici blotch in cereals. Book Chapter.   
- Recovery Plan for Tar Spot of Corn, Caused by Phyllachora maydis  -(Literature Review)   Rocco Da Silva, C., Check, J., Maccready, J.S., Alakonya, A.E., Beiriger, R., Bissonnette, K.M., Collins, A., Cruz, C.D., Esker, P.D., Goodwin, S.B., Malvick, D., Mueller, D.S., Paul, P., Raid, R. 2021. Recovery Plan for Tar Spot of Corn, Caused by Phyllachora maydis. Plant Health Progress. 22:596–616. https://doi.org/10.1094/PHP-04-21-0074-RP.   
- Identifying Specificity Mechanisms in Zymoseptoria tritici in Host and Non-Host interactions  -(Abstract Only)   Gomez, S.V., Goodwin, S.B. 2021. Identifying Specificity Mechanisms in Zymoseptoria tritici in Host and Non-Host interactions. American Phytopathological Society Abstracts. 12:671323. https://doi.org/10.3389/fpls.2021.671323.   
- The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light  -(Peer Reviewed Journal)   Mccorrison, C.B., Goodwin, S.B. 2020. The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light. BMC Genomics. 21:513 https://doi.org/10.1186/s12864-020-06899-y.   
- Genetic Diversity and Population Structure of Zymoseptoria tritici in Ethiopia as Revealed by Microsatellite Markers  -(Peer Reviewed Journal)   Mekonnen, T., Haileselassie, T., Goodwin, S.B., Tesfayea, K. 2020. Genetic Diversity and Population Structure of Zymoseptoria tritici in Ethiopia as Revealed by Microsatellite Markers. Fungal Genetics and Biology (2020). 141:103413. https://doi.org/10.1016/j.fgb.2020.103413.   
- Real-time loop-mediated isothermal amplification assay for rapid and accurate detection of fungal pathogens of wheat -(Abstract Only)   Gomez, S.V., Goodwin, S.B. 2020. Real-time loop-mediated isothermal amplification assay for rapid and accurate detection of fungal pathogens of wheat. In: Proceedings of Plant Health 2020. August 8-12, 2020. Denver, Colorado.   
- Tar Spot, an emerging disease threatening corn production in the US -(Abstract Only)   Singh, R., Goodwin, S.B. 2020. Tar Spot, an emerging disease threatening corn production in the US.  In: Proceedings of Indiana Science Communication Day, May 2, 2020, Indianapolis, Indiana.   
- 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens  -(Peer Reviewed Journal)   Haridas, S., Albert, R., Binder, M., Bloem, J., Labutti, K., Salamov, A., Andreopoulos, B., Baker, S.E., Barry, K., Bills, G., Bluhm, B.H., Cannon, C., Castanera, R., Culley, D.E., Daum, C., Ezra, D., Gonzalez, J.B., Henrissat, B., Inderbitzin, P., Kuo, A., Liang, C., Lipzen, A., Lutzoni, F., Magnuson, J., Mondo, S., Nolan, M., Ohm, R., Pangilinan, J., Park, H., Sanchez, M., Ramirez, L., Sun, H., Tritt, A., Yoshinaga, Y., Zwiers, L., Turgeon, B., Goodwin, S.B., Spatafora, J.W., Crous, P., Grigoriev, I.V. 2020. 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens. Studies in Mycology. 96:141-153. https://doi.org/10.1016/j.simyco.2020.01.003.   
- Elucidating mechanisms of non-host resistance towards Septoria passerinii and Zymoseptoria tritici in wheat and barley -(Abstract Only)   Million, C.R., Crane, C.F., Goodwin, S.B. 2020. Elucidating mechanisms of non-host resistance towards Septoria passerinii and Zymoseptoria tritici in wheat and barley. Plant and Animal Genome Conference Proceedings. Jan 11-15, 2020, San Diego, CA.   
- Genome-scale data suggest an ancestral rock-inhabiting life-style of Dothideomycetes (Ascomycota)  -(Peer Reviewed Journal)   Ametrano, C.G., Grewe, F., Crous, P.W., Goodwin, S.B., Liang, C., Selbmann, L., Lumbsch, H., Leavitt, S.D., Muggia, L. 2019. Genome-scale data suggest an ancestral rock-inhabiting life-style of Dothideomycetes (Ascomycota). IMA Fungus. 10:19. https://doi.org/10.1186/s43008-019-0018-2.   
- Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene  -(Peer Reviewed Journal)   Dhillon, B., Kema, G.H., Hamelin, R., Bluhm, B., Goodwin, S.B. 2019. Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene. Molecular Biology and Evolution. 10:37. https://doi.org/10.1186/s13100-019-0177-0.   
- Update on the global survey of wheat pests and pathogens -(Abstract Only)   Goodwin, S.B. 2019. Update on the global survey of wheat pests and pathogens. International Wheat Congress/Expert Working Group on Wheat Pests and Diseases. 21 July 2019, Saskatoon, Canada.   
- Effect of light-sensing genes on growth and pathogenicity of Zymoseptoria tritici -(Abstract Only)   Mccorison, C.B., Goodwin, S.B. 2019. Effect of light-sensing genes on growth and pathogenicity of Zymoseptoria tritici. American Phytopathological Society Abstracts. August 3-7, 2019, Cleveland, OH.   
- Preliminary survey on the global importance of wheat pests and pathogens -(Abstract Only)   Goodwin, S.B. 2019. Preliminary survey on the global importance of wheat pests and pathogens. Meeting Abstract. International Symposium on Cereal Leaf Blights / Expert Working Group on Wheat Pests and Diseases, May 20-26, 2019, Dublin, Ireland.   
- How can we protect bananas? -(Popular Publication)   Arango Isaza, R.E., Diaz-Trujillo, C., Dhillon, B., Goodwin, S.B., Kema, G. 2018. How can we protect bananas? Biomedical Science Journal for Teens. Available: http://www.sciencejournalforkids.org/uploads/5/4/2/8/54289603/fungus_genome_article.pdf.   
- Septoria tritici blotch -(Book / Chapter)   Goodwin, S. B. 2018. Diseases affecting wheat: Septoria tritici blotch. Pages 47-68 in Integrated Disease Management of Wheat and Barley (R. P. Oliver, ed.). Burleigh Dodds Science Publishing, Cambridge, UK.   
- The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete -(Peer Reviewed Journal)   Goodwin, S.B., McCorison, C.B., Cavaletto, J.R., Culley, D.E., LaButti, K., Baker, S.E., Grigoriev, I.V. 2016. The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. Fungal Biology. 120(8): 961-974. doi: 10.1016/j.funbio.2016.05.003.   
- Combating a global threat to a clonal crop: banana black sigatoka pathogen pseudocercospora fijiensis (synonym mycosphaerella fijiensis) genomes reveal clues for disease control -(Peer Reviewed Journal)   Arango Isaza, R., Diaz Trujillo, C., Dhillon, B., Aerts, A., Carlier, J., Crane, C.F., De Jong, T., De Vries, I., Goodwin, S.B. 2016. Combating a global threat to a clonal crop: banana black sigatoka pathogen pseudocercospora fijiensis (synonym mycosphaerella fijiensis) genomes reveal clues for disease control. PLoS Genetics. 12(8):e1005876. doi:10.1371/journal.pgen.1005876.   
- Generation of reactive oxygen species via NOXa is important for development and pathogenicity of mycosphaerella graminicola -(Peer Reviewed Journal)   Choi, Y., Goodwin, S.B., Lee, C. 2016. Generation of reactive oxygen species via NOXa is important for development and pathogenicity of mycosphaerella graminicola. Mycobiology. 44(1):38-47.   
- Determining the order of resistance genes against Stagonospora nodorum blotch, Fusarium head blight and stem rust on wheat chromosome 3BS -(Peer Reviewed Journal)   Thapa, R., Brown Guedira, G.L., Ohm, H.W., Mateos-Hernandez, M., Wise, K.A., Goodwin, S.B. 2016. Determining the order of resistance genes against Stagonospora nodorum blotch, Fusarium head blight and stem rust on wheat chromosome 3BS. BMC Research Notes. 9:58. doi: 10.1186/s13104-016-1859-z.   
- Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen -(Peer Reviewed Journal)   Dhillon, B., Feau, N., Aerts, A., Beauseigle, S., Labutti, K., Ohm, R., Pangilinan, J., Goodwin, S.B. 2015. Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen. Proceedings of the National Academy of Sciences. 112(11):3451-3456.   
- The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola -(Peer Reviewed Journal)   Dhillon, B., Gill, N., Hamelin, R., Goodwin, S.B. 2014. The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola. Biomed Central (BMC) Genomics. 15:1132.   
- The threat of hybrid Phytophthoras -(Proceedings)   Beckerman, J., Goodwin, S.B., Gibson, K. 2014. The threat of hybrid Phytophthoras. In: USDA Forest Service Proceedings, RMRS-P-72. Joint meeting of the Northeast Forest and Conservation Nursery Association and Southern Forest Nursery Association, July 22-25, 2013, Lafayette, Indiana.  page 12-17.   
- The genomes of Mycosphaerella graminicola and M. fijiensis -(Book / Chapter)   Goodwin, S.B., Kema, G. 2014. The genomes of Mycosphaerella graminicola and M. fijiensis. In: Dean, R.A., Lichens-Park, A., Kole, C., editors. Genomics of Plant-Associated Fungi: Monocot Pathogens. Springer Berlin Heidelberg. p. 123-140.   
- Dothideomycetes: Plant pathogens, saprobes and extremophiles -(Book / Chapter)   Goodwin, S.B. 2013. Dothideomycetes: Plant pathogens, saprobes and extremophiles. In: Martin, F. editor. The Ecological Genomics of Fungi. Hoboken, NJ: John Wiley & Sons, Inc. p. 119-147.   
- Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3-Genes, Genomes, Genetics. -(Peer Reviewed Journal)   Manning, V.A., Pandelova, I., Dhillon, B., Wilhelm, L.J., Goodwin, S.B., Berlin, A., Figueroa, M., Freitag, M., Hane, J.K., Henrissat, B. 2013. Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence. G3-Genes, Genomes, Genetics. 3:41-63.   
- Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi -(Peer Reviewed Journal)   Ohm, R., Feau, N., Henrissat, B., Schoch, C.L., Horwitz, B.A., Barry, K.W., Condon, B.J., Copeland, A.C., Dhillon, B., Glaser, F., Goodwin, S.B. et al. 2012. Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi. PLoS Pathogens. 8(12): e1003037. DOI:10.1371/journal.ppat.1003037.   
- The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry -(Peer Reviewed Journal)   Dewit, P., Van Der Burgt, A., Okmen, B., Datema, E., Cox, M.P., Ganley, A.R., Aerts, A., Sun, H., Goodwin, S.B. 2012. The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry. PLoS Genetics. 8(11): e1003088. DOI:10.1371/journal.pgen.1003088.   
- Molecular mapping re-locates the Stb2 gene for resistance to Septoria tritici blotch derived from cultivar Veranopolis on wheat chromosome 1BS -(Peer Reviewed Journal)   Liu, Y., Zhang, L., Thompson, I.A., Goodwin, S.B., Ohm, H. 2012. Molecular mapping re-locates the Stb2 gene for resistance to Septoria tritici blotch derived from cultivar Veranopolis on wheat chromosome 1BS. Euphytica. 190:145-156. DOI: 10.1007/s10681-012-0796-8.   
- Resistance in wheat to Septoria diseases caused by Mycosphaerella graminicola (Septoria tritici) and Phaeosphaeria (Stagonospora) nodorum -(Book / Chapter)   Goodwin, S.B. 2012. Resistance in wheat to Septoria diseases caused by Mycosphaerella graminicola (Septoria tritici) and Phaeosphaeria (Stagonospora) nodorum. In: Sharma, I, Editor. Disease resistance in wheat. Wallingford, UK: CABI. p. 151-159.   
- Genetic differentiation at microsatellite loci among populations of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota -(Peer Reviewed Journal)   Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W.W., Adhikari, T.B. 2011. Genetic differentiation at microsatellite loci among populations of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota. Phytopathology. 101:1251-1259.   
- Mesosynteny; A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi -(Peer Reviewed Journal)   Hane, J.K., Rouxel, T., Howlett, B., Kema, G.J., Goodwin, S.B., Oliver, R.P. 2011. Mesosynteny; A novel mode of chromosomal evolution peculiar to filamentous Ascomycete fungi. Genome Biology. 12:R45.   
- Mycosphaerella comparative genomics reveals chromosome dynamics, genome evolution and stealth pathogenesis -(Abstract Only)     
- Fueling the future with fungal genomics -(Peer Reviewed Journal)   Grigoriev, I.V., Cullen, D., Hibbett, D., Goodwin, S.B., Jeffries, T.W., Kuske, C., Magnuson, J., Spatafora, J. 2011. Fueling the future with fungal genomics. Mycological Society Of Japan. DOI: 10.1080/21501203.2011.584577.   
- Mycosphaerella comparative genomics reveals chromosome dynamics, genome evolution and stealth pathogenesis -(Abstract Only)   Goodwin, S.B., Dhillon, B., Ben M"Barek, S., Grigoriev, I.V., Kema, G.J. 2011. Mycosphaerella comparative genomics reveals chromosome dynamics, genome evolution and stealth pathogenesis. American Phytopathological Society Abstracts.   
- Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis -(Peer Reviewed Journal)   Goodwin, S.B., M'Barek, S., Dhillon, B., Wittenberg, A.J., Crane, C.F., Van Der Lee, T.J., Grimwood, J., Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Canto-Canche, B., Churchill, A., Conde-Ferraez, L., Cools, H., Coutinho, P.M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Foster, A.J., Hammond-Kosack, K., Hane, J., Henrissat, B., Killian, A., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lindquist, E., Lombard, V., Maliepaard, C., Martins, N., Mahrabi, R., Oliver, R., Ponomarenko, A., Rudd, J., Salamov, A., Schmutz, J., Schouten, H.J., Shapiro, H., Stergiopoulos, I., Torriani, S.F., Tu, H., De Vries, R.P., Wiebenga, A., Zwiers, L., Grigoriev, I.V., Kema, G.J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLoS Genetics. Available at: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002070.   
- Identification and annotation of repetitive sequences in fungal genomes -(Book / Chapter)   Dhillon, B., Goodwin, S.B. 2011. Identification and annotation of repetitive sequences in fungal genomes. Methods in Molecular Biology. In: Xu, J.R., Bluhm, B.H., editors. Methods in Molecular Biology: Fungal Genomics. New York, NY: Humana Press. p. 33-50.   
- Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat induced point mutations -(Peer Reviewed Journal)   Rouxel, T., Grandaubert, J., Hane, J.K., Hoede, C., Van De Wouw, A. ., Couloux, A., Dominguez, V., Anthouard, V., Bally, P., Bourras, S., Cozijnsen, A.J., Ciuffetti, L.M., Degrave, A., Dilmaghani, A., Duret, L., Fudal, I., Goodwin, S.B., Gout, L., Glaser, N., Linglin, J., Kema, G.G., Lapalu, N., Lawrence, C.B., May, K., Meyer, M., Ollivier, B., Poulain, J., Simon, A., Stachowiak, A., Turgeon, G.B., Tyler, B.M., Vincent, D., Weissenbach, J., Amselem, J., Balesdent, M., Howlett, B., Oliver, R.P., Quesneville, H., Wincker, P. 2011. Effector diversification within compartments of the Leptosphaeria maculans genome affected by repeat induced point mutations. Nature Communications. 2:202.   
- Gene encoding a C-type cyclin in Mycosphaerella graminicola is involved in aerial mycelium formation, filamentous growth, hyphal swelling, melanin biosynthesis, stress response, and pathogenicity -(Peer Reviewed Journal)   Choi, Y., Goodwin, S.B. 2011. Gene encoding a C-type cyclin in Mycosphaerella graminicola is involved in aerial mycelium formation, filamentous growth, hyphal swelling, melanin biosynthesis, stress response, and pathogenicity. Molecular Plant-Microbe Interactions. 24:469-477.   
- Septoria Tritici Blotch (STB) -(Research Notes)   Ponomarenko, A., Goodwin, S.B., Kema, G. 2011. Septoria Tritici Blotch (STB). The Plant Health Instructor. DOI:10.1094/PHI-I-2011-0407-01.   
- MVE1 Encoding the velvet gene product homolog in Mycosphaerella graminicola is associated with aerial mycelium formation, melanin biosynthesis, hyphal swelling, and light signaling -(Peer Reviewed Journal)   Choi, Y., Goodwin, S.B. 2011. MVE1 Encoding the velvet gene product homolog in Mycosphaerella graminicola is associated with aerial mycelium formation, melanin biosynthesis, hyphal swelling, and light signaling. Applied and Environmental Microbiology. 77:942-953.   
- Mature watermelon vine decline: evidence for the biological nature of a soil-borne problem -(Peer Reviewed Journal)   Westphal, A., Xing, L., Goodwin, S.B. 2011. Mature watermelon vine decline: evidence for the biological nature of a soil-borne problem. Plant Pathology. 30:111-117.   
- Accidental Amplification and Inactivation of a Methyltransferase Gene Eliminates Cytosine Methylation in Mycosphaerella Graminicola -(Peer Reviewed Journal)   Dhillon, B., Cavaletto, J.R., Wood, K.V., Goodwin, S.B. 2010. Accidental Amplification and Inactivation of a Methyltransferase Gene Eliminates Cytosine Methylation in Mycosphaerella Graminicola. Genetics. 186:67-77.   
- Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.) -(Peer Reviewed Journal)   Garcia, S.L., Van Der Lee, T.J., Ferreira, C.F., Hekkert, B., Carlier, J., Goodwin, S.B., Guzman, M., Souza, M.T., Kema, G.J. 2010. Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.). Genetics and Molecular Research. 9:2207-2212.   
- Genetic Structure of Mycosphaerella Graminicola Populations in the Major Wheat-Growing Regions of the United States -(Abstract Only)   Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W., Adhikari, T.B. 2010. Genetic Structure of Mycosphaerella Graminicola Populations in the Major Wheat-Growing Regions of the United States. Phytopathology.   
- The Mycosphaerella Genomics Consortium: Understanding Pathogenicity and Adaptation -(Abstract Only)   Goodwin, S.B., Stergiopoulos, De Wit P.J.G.M., Kema, G. 2010. The Mycosphaerella Genomics Consortium: Understanding Pathogenicity and Adaptation. Canadian Phytopathological Society Meeting.   
- Analysis of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota with Mating Type and SSR Markers -(Abstract Only)   Gurung, S., Goodwin, S.B., Kabbage, M., Bockus, W., Adhikari, T.B. 2010. Analysis of Mycosphaerella Graminicola from California, Indiana, Kansas and North Dakota with Mating Type and SSR Markers. Phytopathology. 100:S45.   
- Gene Encoding a C-Type Cyclin in Mycosphaerella Graminicola is Involved in Mycelium Formation, Melanin Biosynthesis, Stress Response, and Pathogenicity -(Abstract Only)   Choi, Y., Goodwin, S.B. 2010. Gene Encoding a C-Type Cyclin in Mycosphaerella Graminicola is Involved in Mycelium Formation, Melanin Biosynthesis, Stress Response, and Pathogenicity. Phytopathology.   
- Nutrient Acquisition and Generation of Reactive Oxygen Species Via CREA, AREA, and NOXa are Important in Pathogenicity in Mycosphaerella Graminicola -(Abstract Only)   Choi, Y., Goodwin, S.B. 2010. Nutrient Acquisition and Generation of Reactive Oxygen Species Via CREA, AREA, and NOXa are Important in Pathogenicity in Mycosphaerella Graminicola. Phytopathology.   
- Development of Isogenic Lines for Resistance to Septoria Tritici Blotch in Wheat   -(Abstract Only)   Goodwin, S.B., Thompson, I.A. 2010. Development of Isogenic Lines for Resistance to Septoria Tritici Blotch in Wheat  . International Wheat Conference Proceedings.   
- The dodge of blotch: Saving sex in Mycosphaerella graminicola -(Abstract Only)   Kema, G., Ware, S., Van Der Lee, T., Wittenberg, A., Diaz, C., Goodwin, S.B., De Waard, M., M"Barek, S. 2010. The dodge of blotch: Saving sex in Mycosphaerella graminicola. Meeting Proceedings.   
- The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana -(Abstract Only)   Kema, G., Goodwin, S.B., Van Der Lee, T., Dhillon, B., Arango, R., Crane, C.F., Diaz, C., Souza, M., Carlier, J., Schmutz, J., Grigoriew, I. 2010. The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana. Meeting Proceedings.   
- Potential New Genes for Resistance to Mycosphaerella Graminicola Identified in Triticum Aestivum x Lophopyrum Elongatum Disomic Substitution Lines -(Peer Reviewed Journal)   Anderson, J.M., Bucholtz, D.L., Sardesai, N., Santini, J.B., Gyulai, G., Williams, C.E., Goodwin, S.B. 2009. Potential New Genes for Resistance to Mycosphaerella Graminicola Identified in Triticum Aestivum x Lophopyrum Elongatum Disomic Substitution Lines. Euphytica. 172:251-262.   
- Gearing Up for Comparative Genomics: Analyses of the Fungal Class Dothideomycetes. Dothideomycetes Comparative Genomics Session: 25th Fungal Genetics Conference, Pacific Grove, CA, USA, March 2009 -(Peer Reviewed Journal)   Goodwin, S.B., Kema, G.J. 2009. Gearing Up for Comparative Genomics: Analyses of the Fungal Class Dothideomycetes. New Phytologist. 183:250-253.   
- Genome Plasticity in the Genus Mycosphaerella   -(Abstract Only)   Goodwin, S.B., Kema, G.J. 2009. Genome Plasticity in the Genus Mycosphaerella. Phytopathology 99:S166     
- Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella Graminicola -(Peer Reviewed Journal)   Wittenberg, A.J., Van Der Lee, T.A., M'Barek, S.B., Ware, S.B., Goodwin, S.B., Kilian, A., Visser, R.F., Kema, G.J., Schouten, H.J. 2009. Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella Graminicola. PLoS One.  Available: PLoSONE4(6):e5863.doi:10.1371/journal/pone.005863   
- Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis -(Peer Reviewed Journal)   Dunkle, L.D., Crane, C.F., Goodwin, S.B. 2009. Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis. Molecular Ecology Resources. 9:1375-1379.   
- Absence of Cytosine Methylation in Mycosphaerella Graminicola Correlates with Repeat Induced Point Mutation Signature in its Dim-2 Homologue -(Abstract Only)   Dhillon, B., Cavaletto, J.R., Wood, K.V., Goodwin, S.B. 2009. Absence of Cytosine Methylation in Mycosphaerella Graminicola Correlates with Repeat Induced Point Mutation Signature in its Dim-2 Homologue. Fungal Genetics Conference Proceedings. Abstract No. 43.   
- Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola -(Abstract Only)   M'Barek, S.B., Van Der Lee, T.A., Wittenberg, A.H., Maliepaard, C., Crane, C.F., Dhillon, B., Goodwin, S.B., Schouten, H.J., Kema, G.H. 2009. Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola. Fungal Genetics Conference Proceedings. 56:102   
- A Genetic Linkage Map of Mycosphaerella Fijiensis, using SSR and DArT Markers -(Abstract Only)   Ferreira, C.F., Van Der Lee, T.J., Zapater, M.F., Carlier, J., Goodwin, S.B., Souza, M.T., Kema, G.J. 2009. A Genetic Linkage Map of Mycosphaerella Fijiensis, using SSR and DArT Markers. Fungal Genetics Conference Proceedings.  Abstract No. 513.   
- Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identifing Novel Genes expressed during Vegetative, Infectious, & Reproductive Growth -(Peer Reviewed Journal)   Bluhm, B., Dhillon, B., Lindquist, E., Crane, C.F., Kema, G., Goodwin, S.B., Dunkle, L.D. 2008. Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-maydis Identify Novel Genes Expressed during Vegetative, Infectious, & Reproductive Growth. Biomed Central (BMC) Genomics. 9:523.   
- Use of PCR analysis for identification of species and genus of Septoria on grain crops -(Abstract Only)   Mustafina, M.A., Polyakova, T.M., Goodwin, S.B. 2008. Use of PCR analysis for identification of species and genus of Septoria on grain crops. Symposium Proceedings.  P. 248-249.   
- Epidemiological Peculiarity of Septoria Species on Winter Wheat in the Central Region of the Russian Federation -(Abstract Only)   Paholkova, E.V., Akimova, E.A., Sanin, S.S., Goodwin, S.B. 2008. Epidemiological Peculiarity of Septoria Species on Winter Wheat in the Central Region of the Russian Federation. Symposium Proceedings.   
- Development of a genetic linkage map of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in bananas (Musa spp.) using SSR and DArT markers -(Abstract Only)   Ferreira, C.F., Van Der Lee, T., Zapater, M.F., Carlier, J., Goodwin, S.B., Souza, Jr., M.T., Kema, G. 2008. Development of a genetic linkage map of Mycosphaerella fijiensis, the causal agent of black leaf streak disease in bananas (Musa spp.) using SSR and DArT markers. Symposium Proceedings. Available: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/008_abs.pdf   
- Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.) -(Abstract Only)   Fereira, C.F., Van Der Lee, T., Quiros, Q., Te Lintel, H.B., Zapater, M.F., Carlier, J., Goodwin, S.B., Guzman, M., Souza, Jr., M.T., Kema, G. 2008. Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.). Symposium Proceedings. Available: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00007_posterabstract.pdf   
- Validation of a new map location for the Stb3 gene for resistance to septoria tritici blotch in wheat -(Abstract Only)   Goodwin, S.B., Cavaletto, J.R., Lowe, I., Thompson, I.A., Xu, S.X., Adhikari, T.B., Dubcovsky, J. 2008. Validation of a new map location for the Stb3 gene for resistance to septoria tritici blotch in wheat. International Septoria Stagonospora Workshop. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00022_posterabstract.pds   
- Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola -(Abstract Only)   Torriani, S.F., Goodwin, S.B., Kema, G.J., Pangilinan, J.L., Mcdonald, B.A. 2008. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. International Septoria Stagonospora Workshop. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00021_posterabstract.pdf   
- Population genetic structure of Phaeosphaeria nodorum in the central United States -(Abstract Only)   Adhikari, T.B., Ali, S., Burlakoti, R.R., Singh, P.K., Mergoum, M., Goodwin, S.B. 2008. Population genetic structure of Phaeosphaeria nodorum in the central United States. Septoria International Workshop Proceedings. Available at: http://www.path.ethz.ch/news/conferences/Mycosphaerella_Ascona_2007/00024_posterabstract.pdf   
- Mature watermelon vine decline is associated with Rhizopycnis vagum -(Abstract Only)   Westphal, A., Xing, L., Goodwin, S.B., Egel, D.S. 2008. Mature watermelon vine decline is associated with Rhizopycnis vagum. Phytopathology. 98: S170   
- Cercosporin Production in Cercospora and Related Anamorphs of Mycosphaerella -(Book / Chapter)   Goodwin, S.B., Dunkle, L.D. 2010. Cercosporin production in Cercospora and Related Anamorphs. In: Lartey, R.T., Weiland, J.J., Panella, L., Crous, P.W., and Windels, C.E. editors. Cercospora Leaf Spot of Sugar Beet and Related Species. St. Paul, MN:APS Press. p. 97-108.   
- Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola -(Peer Reviewed Journal)   Torriani, S.F., Goodwin, S.B., Kema, G.H., Pangilinan, J.L., Mcdonald, B.A. 2008. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. Fungal Genetics and Biology. 45:628-637.   
- Comparative repeat analysis of two fungi from the genus Mycosphaerella -(Abstract Only)   Dhillon, B., Goodwin, S.B. 2008. Comparative repeat analysis of two fungi from the genus Mycosphaerella. Plant and Animal Genome Conference. Available: http://www.intlpag.org/16/abstracts/pag16_p05a_220.html.   
- The finished genomic sequence of the Septoria tritici blotch pathogen Mycosphaerella graminicola -(Abstract Only)   Goodwin, S.B., Ponomarenko, A.L., Dhillon, B., Grigoriev, I., Kema, G.H. 2007. The finished genomic sequence of the Septoria tritici blotch pathogen Mycosphaerella graminicola. International Wheat Conference Proceedings [abstract]. Abstract No. 26.   
- Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat -(Proceedings)   Goodwin, S.B. 2007. Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat. Australasian Plant Pathlogy Society. 36:532-538.   
- Resistance of wheat to Mycosphaerella graminicola involves early and late peaks of gene expression -(Peer Reviewed Journal)   Adhikari, T.B., Balaji, B., Breeden, J., Goodwin, S.B. 2007. Resistance of wheat to Mycosphaerella graminicola involves early and late peaks of gene expression. Physiological and Molecular Plant Pathology. 71:55-68.   
- Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat -(Abstract Only)   Goodwin, S.B. 2007. Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat. Proceedings of the 16 Biennial Australasian Plant Pathlogy Society Conference, Adelaide, Australia, p. 78.   
- Early and Late Peaks of Gene Expression During the Resistance Response of Wheat to Mycosphaerella Graminicola -(Abstract Only)   Goodwin, S.B., Adhikari, T.B. 2007. Early and Late Peaks of Gene Expression During the Resistance Response of Wheat to Mycosphaerella graminicola. Abstracts of the ComBio 2007 conference, Abstract SYM-16-01, Sydney, Australia, p. 44.  Available at: http://www.asbmb.org.au/combio2007/abstracts/edited/GOODWIN-2007081011656.rtf.   
- Genetic structure of Phaeosphaeria nodorum populations in the north-central and mid-western United States -(Peer Reviewed Journal)   Adhikari, T.B., Ali, S., Burlakoti, R., Singh, P., Mergoum, M., Goodwin, S.B. 2007. Genetic structure of Phaeosphaeria nodorum populations in the north-central and mid-western United States. Journal of Phytopathology. 98:101-107.   
- Early growth of a nonhost pathogen, Mycosphaerella graminicola, on barley -(Abstract Only)   Helliwell, E., Goodwin, S.B. 2007. Early growth of a nonhost pathogen, Mycosphaerella graminicola, on barley [abstract].  Phytopathology. 98:202   
- Fungal and oomycete genes galore: highlights from the Fungal Genomics Workshop at the 2007 Plant and Animal Genome Conference -(Other)   Komoun, S., Goodwin, S.B. 2007. Fungal and oomycete genes galore: highlights from the Fungal Genomics Workshop at the 2007 Plant and Animal Genome Conference. New Phytologist. 173:713-717.   
- Mycosphaerella graminicola sequencing heads towards the first finished genome of a filamentous plant pathogenic fungus -(Abstract Only)   Kema, G.H., Dunkle, L.D., Churchill, A.C., Carlier, J., James, A., Souza Jr., M.T., Crous, P., Roux, N., Van Der Lee, T.A., Wittenberg, A., Lindquist, E., Grigoriev, I., Bristow, J., Grimwood, J., Goodwin, S.B. 2007. Mycosphaerella graminicola sequencing heads towards the first finished genome of a filamentous plant pathogenic fungus [abstract]. Abstracts of the 2nd Annual U.S. D.O.E. Joint Genome Institute User Meeting, Walnut Creek, CA. p. 35-36.   
- Sequencing on the Mycosphaerella branch of the fungal evolutionary tree -(Abstract Only)   Goodwin, S.B., Kema, G.H. 2007. Sequencing on the Mycosphaerella branch of the fungal evolutionary tree [abstract]. Abstracts of the 2nd Annual U.S. D.O.E. Joint Genome Institute User Meeting, Walnut Creek, CA. p. 2-3.   
- Almost finished: the complete genome sequence of Mycosphaerella graminicola -(Abstract Only)   Kema, G.H., Grigoriev, I., Aerts, A., Salamov, A., Tu, H., Shapiro, H., Bristow, J., Grimwood, J., Goodwin, S.B. 2007. Almost finished: the complete genome sequence of Mycosphaerella graminicola. Fungal Genetics Conference Proceedings [abstract]. Abstract No. 228.   
- Characterization of chromosomal regions containing quantitive trait loci determining specificity towards bread and durum wheat cultivars in the fungal wheat pathogen Mycosphaerella graminicola -(Abstract Only)   Ware, S.B., Wittenberg, A.H., Verstappen, E.C., Van Der Lee, T., Schouten, H.J., Goodwin, S.B., Grimwood, J., Bristow, J., Grigoriev, I., Kema, G.H. 2007. Characterization of chromosomal regions containing quantitive trait loci determining specificity towards bread and durum wheat cultivars in the fungal wheat pathogen Mycosphaerella graminicola. [abstract] Plant and Animal Genome VX Conference. Abstract W360.  Available: http://www.intlpag.org/15/abstracts/PAG15_W56_360.html   
- DISCOVERY OF A FUNCTIONAL MYCOSPHAERELLA TELEOMORPH IN THE PRESUMED ASEXUAL BARLEY PATHOGEN SEPTORIA PASSERINII -(Peer Reviewed Journal)   Ware, S.B., Verstappen, E.C., Breeden, J., Cavaletto, J.R., Goodwin, S.B., Waalwijk, C., Crous, P.W., Kema, G.H. 2007. Discovery of a functional Mycosphaerella teleomorph in the presumed asexual barley pathogen Septoria passerinii. Fungal Genetics and Biology. 44:389-397.   
- Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis -(Abstract Only)   Crane, C.F., Quevillon, E., Goodwin, S.B. 2007. Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis. Plant and Animal Genome VX Conference Abstracts.  Available: http://www.intl-pag.org/15/abstracts/PAG15_P03b_144.html.   
- Sequencing the Major Mycosphaerella Pathogens of Wheat and Banana -(Abstract Only)   Kema, G.J., Dunkle, L.D., Churchill, A.L., Carlier, J., James, A., Souza Jr., M.T., Crous, P., Roux, N., Van Der Lee, T.J., Wittenberg, A., Lindquist, E., Grigoriev, I., Bristow, J., Goodwin, K.R. Sequencing the Major Mycosphaerella Pathogens of Wheat and Banana [abstract]. Plant and Animal Genome VX Conference. Abstract No. W162.   
- Sequencing the Major Mycosphaerella Pathogens of Wheat and Banana -(Abstract Only)   Kema, G.H., Dunkle, L.D., Churchill, A.C., Carlier, J., James, A., Souza, M.T., Crous, P., Roux, N., Van Der Lee, T.A., Wittenberg, A., Lindquist, E., Grigoriev, I., Bristow, J., Goodwin, S.B. 2007. Sequencing the Major Mycosphaerella Pathogens of Wheat and Banana. Plant and Animal Genome VX Conference Abstracts.  Available: http://www.intl-pag.org/15/abstracts/PAG15_W23_162.html   
- IDENTIFICATION AND GENETIC MAPPING OF HIGHLY POLYMORPHIC MICROSATELLITE LOCI FROM AN EST DATABASE OF THE SEPTORIA TRITICI BLOTCH PATHOGEN MYCOSPHAERELLA GRAMINICOLA -(Peer Reviewed Journal)   Goodwin, S.B., Van Der Lee, T., Cavaletto, J.R., Hekkert, B., Crane, C.F., Kema, G.H. 2006. Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the Septoria tritici blotch pathogen Mycosphaerella graminicola. Fungal Genetics and Biology. 44:398-414.   
- GeneChip analyses identify specific non-host and R-gene resistance responses of barley to the septoria pathogens Mycosphaerella graminicola and Septoria passerinii -(Abstract Only)   Goodwin, S.B., Breeden, J.D., Stevens, J., Doerge, R.W. 2006. GeneChip analyses identify specific non-host and R-gene resistance responses of barley to the septoria pathogens Mycosphaerella graminicola and Septoria passerinii. [abstract] International Triticeae Symposium Proceedings. Paper No. 13.   
- GENOMIC AND EST SEQUENCING OF MYCOSPHAERELLA SPECIES WILL PERMIT COMPARATIVE ANALYSES WITH RELATED FUNGI AND ANAMORPHS -(Abstract Only)   Goodwin, S.B., Dunkle, L.D., Churchill, A.C.L., Carlier, J., James, A., Souze, M.T., Crous, P., Roux, N., van der Lee, T.A.J., Waalwijk, C., Lindquist, E., Bristow, J., and Kema, G.H.J. 2006. Genomic and EST sequencing of mycosphaerella species will permit comparative analyses with related fungi and anamorphs. 8th Mycological International Conference Proceedings. p. 57.   
- GENETIC VARIATION IN STAGONOSPORA NODORUM IN THE NORTH CENTRAL UNITED STATES -(Abstract Only)   Adhikari, T., Ali, S., Burlakoti, R.R., Chhetri, B.P., Goodwin, S.B. 2006. Genetic variation in stagonospora nodorum in the north central united states. [abstract] Phytopathology. 96:S3.   
- CERCOSPORIN PRODUCTION IN CERCOSPORA AND RELATED ANAMORPHS OF MYCOSPHAERELLA -(Abstract Only)   Goodwin, S.B., Dunkle, L.D. 2006. Cercosporin production in cercospora and related anamorphs of Mycosphaerella. [abstract] Phytopathology. 96:S139.   
- SEQUENCING MYCOSPHAERELLA AND CERCOSPORA SPECIES WILL REVOLUTIONIZE THE CONTROL OF MAJOR GLOBAL THREATS ON WHEAT, BANANA AND MAIZE -(Abstract Only)   Goodwin, S.B., Dunkle, L.D., Churchill, A.C., Carlier, J., James, A., Souza, M.T., Crous, P., Roux, N., Van Der Lee, T.A., Waalwijk, C. 2006.  Sequencing mycosphaerella and cercospora species will revolutionize the control of major global threats on wheat, banana and maize. [Abstract]. Fungal Genetics Conference Proceedings. p. 23.   
- DEVELOPING A MULTIPLE DISEASE RESISTANCE LINKAGE BLOCK ON WHEAT CHROMOSOME 3BS -(Abstract Only)   Uphaus, J., Shen, X., Goodwin, S.B., Buechley, G., Breeden, J., Ohm, H. 2005. Developing a multiple disease resistance linkage block on wheat chromosome 3bs. [abstract] Proceedings of the 2005 National Fusarium Head Blight Forum, p. 94.   
- VARIABILITY OF MICROSATELLITE MARKERS WITHIN AND BETWEEN POPULATIONS OF MYCOSPHAERELLA GRAMINICOLA IN THE CENTRAL UNITED STATES -(Abstract Only)   Goodwin, S.B. 2005. Variability of microsatellite markers within and between populations of Mycosphaerella graminicola in the central United States. Phytopathology. 95:535-536.   
- STAGONOSPORA NODORUM BLOTCH AND SEPTORIA TRITICI BLOTCH -(Abstract Only)   Ohm, Herbert, Goodwin, S.B., Uphaus, J., Breeden, J.D. 2005. Stagonospora nodorum blotch and septoria tritici blotch. [ABSTRACT] Eastern Wheat Workers and Southern Small Grain Workers Conference, Bowling Green, KY, p. 51.   
- IDENTIFICATION FROM AN EST DATABASE AND GENETIC MAPPING OF MICROSATELLITES IN MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)   Goodwin, S.B., Cavaletto, J.R., Lee, T.V., Hekkert, B.T., Kema, G.H. 2005. Identification from an EST database and genetic mapping of microsatellites in Mycosphaerella graminicola. Fungal Genetics Newsletter. Fungal Genetics Conference Proceedings, March 15-19, 2005, Pacific Grove, CA. 51(S):154.   
- EXPRESSION OF DEFENSE-RELATED GENES IN WHEAT DURING COMPATIBLE AND INCOMPATIBLE INTERACTIONS WITH MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)   Adhikari, T.B., Boovaraghan, B., Breeden, J.D., Cavaletto, J.R., Goodwin, S.B. 2005. Expression of defense-related genes in wheat during compatible and incompatible interactions with mycosphaerella graminicola (abstract). Plant and Animal Genome XIII Conference, January 15-19, 2005, San Diego, CA. p. 759. Available: http://www.intl-pag.org/13/abstracts/PAG13_P759.html   
- NON-HOST RESISTANCE OF BARLEY TO THE SEPTORIA TRITICI BLOTCH PATHOGEN OF WHEAT INVOLVES AN ACTIVE DEFENSE RESPONSE -(Abstract Only)   Goodwin, S.B., Breeden, J.D., Stevens, J., Doerge, R.W. 2005. Non-host resistance of barley to the septoria tritici blotch pathogen of wheat involves an active defense response. Plant and Animal Genome Conference XIII, January 15-19, 2005, San Diego, CA. p. 688.  Available: http://www.intl-pag.org/13/abstracts/PAG13_P688.html   
- RAPD ANALYSIS ON GENETIC DIVERSITY OF NIGHTSHADE SPECIES IN THE NORTH CENTRAL REGION -(Abstract Only)   Sharkhuu, A., Goldsbrough, P.B., Goodwin, S.B., Weller, S.C. 2004. Rapd analysis on genetic diversity of nightshade species in the north central region. Proceedings of the 59th North Central Weed Science Society Meetings, December 13-16, 2004, Columbus, OH. p. 58.   
- MOLECULAR MAPPING OF THE STB4 GENE FOR RESISTANCE TO SEPTORIA TRITICI BLOTCH IN WHEAT -(Peer Reviewed Journal)   Adhikari, T., Cavaletto, J.R., Dubcovsky, J., Gieco, J., Schlatter, A.R., Goodwin, S.B. 2004. Molecular mapping of the stb4 gene for resistance to septoria tritici blotch in wheat. Phytopathology. 94:1198-1206.   
- QUANTIFICATION OF MYCOSPHAERELLA GRAMINICOLA IN WHEAT BY REAL-TIME PCR -(Abstract Only)   Adhikari, T., Balaji, B., Breeden, J.D., Anderson, J.M., Goodwin, S.B. 2004. Quantification of Mycosphaerella graminicola in wheat with real-time PCR. Phytopathology. 94:S2.   
- REAL-TIME PCR ANALYSIS OF GENES EXPRESSED DURING WHEAT-MYCOSPHAERELLA GRAMINICOLA INTERACTIONS -(Abstract Only)   Adhikari, T., Balaji, B., Breeden, J.D., Crane, C.F., Anderson, J.M., Goodwin, S.B. 2004. Real-time PCR analysis of genes expressed during wheat-mycosphaerella graminicola interactions. Phytopathology. 94:S2-S3.   
- MOLECULAR MAPPING OF STB1, A POTENTIALLY DURABLE GENE FOR RESISTANCE TO SEPTORIA TRITICI BLOTCH IN WHEAT -(Peer Reviewed Journal)   Adhikari, T., Yang, X., Cavaletto, J.R., Hu, X., Buechley, G., Ohm, H.W., Shaner, G., Goodwin, S.B. 2004. Molecular mapping of Stb1, a potentially durable gene for resistance to Septoria tritici blotch in wheat. Theoretical and Applied Genetics. 109(S):944-953.   
- PLECTOSPORIUM ALISMATIS COMB. NOV., A NEW PLACEMENT FOR THE ALISMATACEAE PATHOGEN RHYNCHOSPORIUM ALISMATIS -(Peer Reviewed Journal)   Pitt, W.M., Goodwin, S.B., Ash, G.J., Cother, N.J., Cother, E.J. 2004. Plectosporium alismatis comb. nov., a new placement for the alismataceae pathogen rhynchosporium alismatis. Mycological Research. 108(7):775-780.   
- MINIMUM PHYLOGENETIC COVERAGE: AN ADDITIONAL CRITERION TO GUIDE THE SELECTION OF MICROBIAL PATHOGENS FOR INITIAL GENOMIC SEQUENCING EFFORTS -(Peer Reviewed Journal)   Goodwin, S.B. 2004. Minimum phylogenetic coverage: an additional criterion to guide the selection of microbial pathogens for initial genomic sequencing efforts. Phytopathology. 94(8):800-804.   
- THE MATING TYPE LOCUS, AN EXAMPLE OF SYNTENY AMONG ASCOMYCETES -(Proceedings)   Waalwijk, C., Van Der Lee, T., Howlett, B., Arts, J., De Vries, I., Mendes, O., Hesselink, T., Verstappen, E., Goodwin, S.B., Kema, G.H.J. 2003. The mating type locus, an example of synteny among ascomycetes. In: Global Insights into the Septoria and Stagonospora Diseases of Cereals. International Symposium on Septoria/Stagonospora Disease of Cereals, December 8-12, 2003, Tunis, Tunisia. p. 105-106.   
- IDENTIFICATION OF THE TELEOMORPH OF SEPTORIA PASSERINII, THE BARLEY SPECKLED LEAF PATHOGEN -(Abstract Only)   Ware, S., Verstappen, E.C., Cavaletto, J.R., Goodwin, S.B., Waalwijk, C., Kema, G.H. 2004. Identification of the teleomorph of septoria passerinii, the barley speckled leaf pathogen [abstract]. Fungal Genetics Conference Proceedings. p. 94.   
- MINING MICROSATELLITES IN AN EST DATABASE OF MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)   Goodwin, S.B., Cavaletto, J.R., Lee, T.V., Hekkert, B.T., Kema, G.H. 2004. Mining microsatellites in an EST database of Mycoshpaerella graminicola. 7th European Conference on Fungal Genetics, Copenhagen, Denmark. Abstract IXp-26:223.   
- FUNCTIONAL PATHOGENOMICS IN CEREALS -(Abstract Only)   Scofield, S.R., Brandt, A.S., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Lohret, T., Crasta, O. 2004. Functional pathogenomics in cereals (abstract). Plant Animal and Microbe Genome XII. Abstract No. P839.   
- EXPERIMENTAL IDENTIFICATION OF THE TELEOMORPH OF THE BARLEY PATHOGEN SEPTORIA PASSERINII -(Proceedings)   Ware, S.B., Verstappen, E.C., Goodwin, S.B., Waalwijk, C., Kema, G.H. 2003. Experimental identification of the teleomorph of the barley pathogen Septoria passerinii. In: Global Insights into the Septoria and Stagonospora Diseases of Cereals. International Symposium on Septoria/Stagonospora Disease of Cereals, December 8-12, 2003, Tunis, Tunisia. p. 107-110.   
- MOLECULAR MAPPING OF THE SEPTORIA TRITICI BLOTCH RESISTANCE GENE STB1 IN WHEAT -(Abstract Only)   Adhikari, T., Cavaletto, J.R., Hu, X., Shaner, G., Goodwin, S.B. 2004. Molecular mapping of the septoria tritici blotch resistance gene stb1 in wheat (abstract). Plant and Animal Genome XII. Abstract No. P454.   
- THE MYCOSHPAERELLA SEQUENCING INITIATIVE -(Proceedings)   Goodwin, S.B., Mcdonald, B.A., Kema, G.H. 2003. The mycoshpaerella sequencing initiative. In: Global Insights into the Septoria and Stagonospora Diseases of Cereals. International Symposium on Septoria/Stagonospora Disease of Cereals, December 8-12, 2003, Tunis, Tunisia. p. 149-151.   
- THE INTERNATIONAL MYCOSPHAERELLA GENOMICS CONSORTIUM -(Proceedings)   Roux, N., Kema, G.H., Carlier, J., Goodwin, S.B., Crous, P.W., Lebrun, M.H. 2003. The international mycoshpaerella genomics consortium. In: Global Insights into the Septoria and Stagonospora Diseases of Cereals. International Symposium on Septoria/Stagonospora Disease of Cereals, December 8-12, 2003, Tunis, Tunisia. p. 147.   
- RESISTANT WHEAT RESPONDS RAPIDLY TO CONTACT WITH MYCOSPHAERELLA GRAMINICOLA -(Proceedings)   Goodwin, S.B., Rae, S., Urmeev, F.I., Anderson, J.M. 2003. Resistant wheat responds rapidly to contact with mycosphaerella graminicola. In: Global Insights into the Septoria and Stagonospora Diseases of Cereals.  International Symposium on Septoria/Stagonospora Disease of Cereals, December 8-12, 2003, Tunis, Tunisia. p. 123-125.   
- MICROSATELLITE MARKERS LINKED TO THE STB2 AND STB3 GENES FOR RESISTANCE TO SEPTORIA TRITICI BLOTCH IN WHEAT -(Peer Reviewed Journal)   Adhikari, T., Wallwork, H., Goodwin, S.B. 2003. Microsatellite markers linked to the STB2 and STB3 genes for resistance to septoria blotch in wheat. Crop Science. 44:1403-1411.   
- MOLECULAR MARKERS LINKED TO GENES FOR RESISTANCE TO SEPTORIA TRITICI LEAF BLOTCH IN WHEAT -(Proceedings)   Goodwin, S.B., Adhikari, T. 2003. Molecular markers linked to genes for resistance to septoria tritici leaf blotch in wheat. In: Proceedings of the Tenth International Wheat Genetics Symposium, September 1-6, 2003, Paestum, Italy. 3:1142-1144.   
- GENETICS AND GENOMICS OF MYCOSPHAERELLA GRAMINICOLA, A MODEL FOR THE DOTHIDEALES -(Book / Chapter)   Goodwin, S.B., Waalwijk, C., Kema, G.H. 2004. Genetics and genomics of mycosphaerella graminicola, a model for the dothideales. In: Arora, D.K., Khachatourians, G.G., editors. Applied Mycology & Biotechnology. Volume 4. Fungal Genomics. Amsterdam: Elsevier B.V. p. 315-330.   
- GENETIC MAPPING OF SEPTORIA TRITICI LEAF BLOTCH RESISTANCE GENES STB2 AND STB3 IN WHEAT -(Abstract Only)   Adhikari, T., Wallwork, H., Goodwin, S.B. 2003. Genetic mapping of septoria tritici leaf blotch resistance genes stb2 and stb3 in wheat. Phytopathology. 93(s):2.   
- QUANTITATIVE ANALYSIS OF WHEAT DEFENSE-GENE EXPRESSION IN RESPONSE TO INSECT, FUNGAL, AND VIRAL PESTS -(Proceedings)   Anderson, J.M., Williams, C.E., Goodwin, S.B., Scofield, S.R., Ohm, H.W.  2003. Quantitative analysis of wheat defense-gene expression in response to insect, fungal, and viral pests. In: Proceedings of the Tenth International Wheat Genetics Symposium, September 1-6, 2003. Paestum, Italy. 1:323-326.   
- ANALYSIS OF THE WHEAT DEFENSE TRANSCRIPTOME -(Proceedings)   Scofield, S.R., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Loret, T., Crasta, O. 2003. Analysis of the wheat defense transcriptome. Proceedings of the Tenth International Wheat Genetics Symposium, Paestum, Italy. 1:407-410.   
- Rapid induction of a protein disulfide isomerase and defense-related genes in wheat in response to the hemibiotrophic fungal pathogen Mycosphaerella graminicola -(Peer Reviewed Journal)   Ray, S., Anderson, J.M., Urmeev, F.I., Goodwin, S.B. 2003. Rapid induction of a protein disulfide isomerase and defense-related genes in wheat in response to the hemibiotrophic fungal pathogen Mycosphaerella graminicola. Plant Molecular Biology. 53:741-754.   
- Identification and molecular mapping of a gene in wheat conferring resistance to mycosphaerella graminicola -(Peer Reviewed Journal)   Adhikari, T.B., Anderson, J.M., Goodwin, S.B. 2003. Identification and molecular mapping of a gene in wheat conferring resistance to Mycosphaerella graminicola. Phytopathology. 93:1158-1164.   
- MULTI-GENE PHYLOGENIES REVEAL TAXONOMIC CONFUSION IN THE GENUS MAGNAPORTHE -(Abstract Only)   Goodwin, S.B., Levy, M., Cavaletto, J.R., Tian, Y. 2003. Multi-gene phylogenies reveal taxonomic confusion in the genus magnaporthe (abstract). Fungal Genetics Newsletter. 50(S):146.   
- EVIDENCE FOR REPEAT-INDUCED POINT MUTATION (RIP) AMONG SEQUENCES OF A PUTATIVE TRANSPOSABLE ELEMENT FROM THE WHEAT PATHOGEN MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)   Goodwin, S.B., Tian, Y., Cavaletto, J.R. 2003. Evidence for repeat-induced point mutation (rip) among sequences of a putative transposable element from the wheat pathogen mycosphaerella graminicola (abstract). Fungal Genetics Newsletter. 50(S):153.   
- ANALYSIS OF POPULATION GENOTYPIC DIVERSITY DATA:  ASPECTS OF RICHNESS, EVENNESS, AND DIVERSITY. -(Peer Reviewed Journal)   GRUNWALD, N.J., GOODWIN, S.B., MILGROOM, M.G., FRY, W.E. ANALYSIS OF POPULATION GENOTYPIC DIVERSITY DATA:  ASPECTS OF RICHNESS, EVENNESS, AND DIVERSITY.. PHYTOPATHOLOGY. 93:738-741. 2003.   
- TRANSCRIPTIONAL PROFILING OF WHEAT AFTER TREATMENT WITH SEPTORIA TRITCI LEAF BLOTCH, HEAD SCAB, BARLEY AND CEREAL YELLOW DWARF VIRUS, AND HESSIAN FLY -(Abstract Only)   Anderson, J.M., Goodwin, S.B., Ohm, H.W., Lohret, T.A., Crasta, O.R., Williams, C.E. 2003. Transcriptional profiling of wheat after treatment with septoria tritci leaf blotch, head scab, barley and cereal yellow dwarf virus, and hessian fly. Plant and Animal Genome Conference Proceedings.   
- USE OF HIGH-THROUGHPUT TRANSCRIPT ANALYSIS IN WHEAT TO CHARACTERIZE GENES RESPONDING TO DIVERSE PESTS AND PATHOGENS -(Abstract Only)   Goodwin, S.B., Anderson, J.M., Ohm, H.W., Lohret, T.A., Crasta, O.R., Williams, C.E. 2003. Use of high-throughput transcript analysis in wheat to characterize genes responding to diverse pests and pathogens. Annual International Plant & Animal Genome Conference.   
- Cloning and analysis of the mating-type idiomorphs from the barley pathogen Septoria passerinii -(Peer Reviewed Journal)   Goodwin, S.B., Waalwijk, C., Kema, G.H., Cavaletto, J.R., Zhang, G. 2003. Cloning and analysis of the mating-type idiomorphs from the barley pathogen Septoria passerinii. Molecular Genetics and Genomics. 269:1-12.   
- TRANSCRIPTION PROFILING OF WHEAT DEFENSE RESPONSES:  HESSIAN FLY VERSUS MICROBIAL PATHOGENS -(Abstract Only)   Williams, C.E., Goodwin, S.B., Ohm, H.W., Anderson, J.M., Crane, C.F., Scofield, S.R., Lohret, T.A., Crasta, O.R. 2003. Transcription profiling of wheat defense responses:  hessian fly versus microbial pathogens. In: Proceedings of the Entomological Society of America Regional Meetings. Entomological Society of American-North Central Branch, March 23-26, 2003, Madison, Wisconsin. Available: http://esa.ent.iastate.edu/confreg/?gridaction=viewonepresentation&year=2003 &presnum=083   
- ISOZYME ANALYSIS IN FUNGAL TAXONOMY, GENETICS AND POPULATION BIOLOGY -(Book / Chapter)     
- ANALYSIS OF 18S RIBOSOMAL RNA GENE SEQUENCES REVEALS THE PHYLOGENETIC RELATIONSHIPS OF THE GENUS MYCOSPHAERELLA -(Abstract Only)     
- SPECIES DELIMITATION IN THE PUCCINIA STRIIFORMIS COMPLEX -(Abstract Only)     
- THE BARLEY PATHOGEN SEPTORIA PASSERINII PROBABLY HAS AN UNOBSERVED SEXUAL CYCLE. -(Abstract Only)     
- PHYLOGENETIC ANALYSES OF MAGNAPORTHE GRISEA BASED ON INTERNAL TRANSCRIBED SPACER (ITS) AND TRANSLATION ELONGATION FACTOR (TEF) SEQUENCES -(Abstract Only)     
- POSSIBLE REPEAT INDUCED POINT MUTATION (RIP) IN CODING AND FLANKING REGIONS OF A TRANSPOSABLE ELEMENT FROM THE WHEAT PATHOGEN MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- MOLECULAR MAPPING OF SEPTORIA TRITICI LEAF BLOTCH RESISTANCE IN WHEAT -(Abstract Only)   Adhikari, T., Anderson, J.M., Goodwin, S.B. 2002. Molecular mapping of septoria tritici leaf blotch resistance in wheat. Phytopathology.   
- GENES EXPRESSED DURING THE RESISTANCE RESPONSE TO MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)   Ray, S., Goodwin, S.B., Anderson, J.M. 2002. Genes expressed during the resistance response to mycosphaerella graminicola. Phytopathology.   
- A COMBINED AFLP AND RAPD GENETIC LINKAGE MAP OF MYCOSPHAERELLA GRAMINICOLA THE SEPTORIA TRITICI LEAF BLOTCH PATHOGEN OF WHEAT -(Peer Reviewed Journal)     
- COMBINING LIQUID CHROMATOGRAPHY WITH MASS SPECTROMETRY TO DETECT DIFFERENTIAL EXPRESSION OF PROTEINS IN PLANT-PATHOGEN INTERACTIONS -(Abstract Only)   Anderson, J.M., Ren, D., Williams, C.E., Goodwin, S.B., Ohm, H.W., Regnier, F. 2002. Combining liquid chromatography with mass spectrometry to detect differential expression of proteins in plant-pathogen interactions. International Triticeae Symposium Proceedings.   
- THE BARLEY SCALD PATHOGEN RHYNCHOSPORIUM SECALIS IS CLOSELY RELATED TO THE DISCOMYCETES TAPESIA AND PYRENOPEZIZA -(Peer Reviewed Journal)     
- THE MATING TYPE LOCUS, AN EXAMPLE OF SYNTENY AMONG ASCOMYCETES -(Abstract Only)     
- REPEAT-INDUCED POINT MUTATION (RIP) INACTIVATES A TRANSPOSABLE ELEMENT FROMMYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- AN AFLP MARKER LINKED TO THE STB4 GENE FOR RESISTANCE TO SEPTORIA TRITICI  LEAF BLOTCH IN WHEAT -(Abstract Only)     
- DISEASE RESISTANCE IN WHEAT X WHEATGRASS (LOPHOPYRUM ELONGATA) DISOMIC     SUBSTITUTION LINES -(Abstract Only)     
- PHYLOGENETIC ANALYSIS OF PUCCINIA GRAMINIS S.1., BASED ON ITS SEQUENCES -(Abstract Only)     
- MOLECULAR PHYLOGENETIC RELATIONSHIPS AMONG SELECTED CEREAL AND GRASS RUSTS BASED ON ANALYSIS OF NUCLEAR ITS SEQUENCES -(Abstract Only)     
- CONNECTING TELEOMORPHS AND ANAMORPHS OF SELECTED GRASS RUSTS USING ITS     SEQUENCE ANALYSES -(Abstract Only)     
- PHYLOGENETIC ANALYSES OF ITS AND 18S RDNA SEQUENCES REVEAL THE EVOLUTIONARYRELATIONSHIPS OF RHYNCHOSPORIUM SECALIS -(Abstract Only)     
- A TRANSPOSABLE ELEMENT FROM MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- ITS SEQUENCE EVIDENCE FOR PHYLOGENETIC RELATIONSHIPS AMONG LEAF RUSTS ON   GRASSES AND CEREALS -(Abstract Only)     
- DEFINING SPECIES BOUNDARIES WITH GENE FLOW ANALYSIS -(Abstract Only)     
- A DNA FINGERPRINT PROBE FROM MYCOSPHAERELLA GRAMINICOLA IDENTIFIES AN      ACTIVE TRANSPOSABLE ELEMENT -(Peer Reviewed Journal)     
- PHYLOGENETIC ANALYSES OF THE ITS REGION OF RIBOSOMAL DNA REVEAL THAT       SEPTORIA PASSERINII FROM BARLEY IS CLOSELY RELATED TO THE WHEAT PATHOGEN   MYCOSPHAERELLA GRAMINICOLA -(Peer Reviewed Journal)     
- PHYLOGENETIC ANALYSIS OF CERCOSPORA AND MYCOSPHAERELLA BASED ON THE ITS    REGION OF RIBOSOMAL DNA -(Peer Reviewed Journal)     
- CLONING AND ANALYSIS OF THE MATING TYPE GENES FROM THE BARLEY PATHOGEN     SEPTORIA PASSERINII -(Abstract Only)     
- IDENTIFICATION AND MAPPING OF A POTENTIALLY NEW GENE FOR RESISTANCE TO     SEPTORIA TRITICI BLOTCH IN WHEAT -(Abstract Only)     
- EVALUATION OF WHEAT FOR RESISTANCE TO GLUME BLOTCH USING DETACHED LEAVES   AND SPIKELETS -(Abstract Only)     
- A DETACHED-LEAF ASSAY FOR IDENTIFICATION OF WHEAT LINES RESISTANT TO       STAGONOSPORA NODORUM BLOTCH -(Abstract Only)     
- A DNA FINGERPRINT PROBE IN MYCOSPHAERELLA GRAMINICOLA IS AN ACTIVE         TRANSPOSABLE ELEMENT -(Abstract Only)     
- SEPTORIA PASSERINII FROM BARLEY IS CLOSELY RELATED TO THE WHEAT PATHOGEN   MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- A TRANSPOSABLE ELEMENT IN MYCOSPHAERELLA GRAMINICOLA IS ACTIVE DURING      SEXUAL AND ASEXUAL REPRODUCTION -(Proceedings)     
- DIFFERENTIAL DISPLAY ANALYSIS IDENTIFIES POSSIBLE GENES FOR RESISTANCE     AGAINST SEPTORIA TRITICI BLOTCH IN WHEAT -(Abstract Only)     
- ANALYSIS OF AN EST DATABASE REVEALS A PROBABLE CF2 RESISTANCE GENE         HOMOLOG IN WHEAT -(Abstract Only)     
- MOLECULAR TRACKING NEW MIGRATIONS OF AN OLD PATHOGEN:  THE RE-EMERGENCE OF POTATO LATE BLIGHT -(Review Article)     
- SEPTORIA PASSERINII IS CLOSELY RELATED TO THE WHEAT PATHOGEN MYCOSPHAERELLAGRAMINICOLA -(Proceedings)     
- MOLECULAR ANALYSIS OF A DNA FINGERPRINT PROBE FROM MYCOSPHAERELLA          GRAMINICOLA -(Proceedings)     
- MOLECULAR TRACKING NEW MIGRATIONS OF AN OLD PATHOGEN:  THE RE-EMERGENCE OF POTATO LATE BLIGHT -(Abstract Only)     
- GENES EXPRESSED DURING THE RESISTANCE RESPONSE OF WHEAT TO THE FUNGAL      PATHOGEN MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- GENE FLOW ANALYSIS OF MOLECULAR MARKERS CONFIRMS THAT PHYTOPHTHORA         MIRABILIS AND P.INFESTANS ARE SEPARATE SPECIES -(Peer Reviewed Journal)     
- MAPPING THE MYCOSPHAERELLA GRAMINICOLA GENOME -(Abstract Only)     
- POPULATION STRUCTURE:  OOMYCETES -(Book / Chapter)     
- HIGH EVOLUTIONARY CONSERVATION OF RESISTANCE GENE ANALOGS FROM DIVERSE     PLANT HOSTS -(Abstract Only)     
- CHARACTERIZATION OF PHYTOPHTHORA POPULATIONS IN WESTERN WASHINGTON -(Peer Reviewed Journal)     
- PROBABLE SYMPATRIC SPECIATION IN PHYTOPHTHORA MEDIATED BY CHANGES IN HOST  SPECIFICITY -(Abstract Only)     
- GENETIC CHANGE WITHIN POPULATIONS OF PHYTOPHTHORA INFESTANS IN THE UNITED  STATES AND CANADA DURING 1994 TO 1996: ROLE OF MIGRATION AND RECOMBINATION -(Peer Reviewed Journal)     
- HIGH GENETIC SIMILARITY AMONG CLONED RESISTANCE GENE ANALOGS FROM WHEAT,   RICE AND BARLEY -(Abstract Only)     
- CLONING AND ANALYSIS OF FOUR RESISTANCE GENE ANALOGS FROM WHEAT USING      CONSERVED PRIMERS -(Proceedings)     
- AN AFLP MARKER LINKED TO A GENE FOR RESISTANCE TO SEPTORIA TRITICI BLOTCH  IN WHEAT -(Proceedings)     
- POPULATION GENETICS OF RAPD VARIATION AND THE DEVELOPMENT OF SCARS IN      MYCOSPHAERELLA GRAMINICOLA -(Abstract Only)     
- A GLOBAL MARKER DATABASE FOR PHYTOPHTHORA INFESTANS -(Peer Reviewed Journal)     
- ORIGIN AND ECOLOGY OF PHYTOPHTHORA INFESTANS -(Proceedings)     
- MOLECULAR MAPPING OF A GENE FOR RESISTANCE TO SEPTORIA TRITICI BLOTCH IN   WHEAT -(Abstract Only)     
- CLONING AND CHARACTERIZATION OF RESISTANCE GENE ANALOGS FROM WHEAT -(Abstract Only)     
- A COMPARISON OF RAPDS AND ISOZYMES FOR MEASURING GENETIC VARIATION IN THREESEPTORIA PATHOGENS -(Abstract Only)     
- ANALYSIS OF VARIATION IN THE MITOCHONDRIAL GENOMES OF FUNGI -(Abstract Only)     
- RE-EMERGENCE OF POTATO AND TOMATO LATE BLIGHT IN THE UNITED STATES AND     CANADA -(Peer Reviewed Journal)     
- ORIGIN OF THE A2 MATING TYPE OF PHYTOPHTHORA INFESTANS OUTSIDE MEXICO -(Peer Reviewed Journal)     
- SENSITIVITY TO PROTECTANT FUNGICIDES AND PATHOGENIC FITNESS OF CLONAL      LINEAGES OF PHYTOPHTHORA INFESTANS IN THE UNITED STATES -(Peer Reviewed Journal)     
- ORIGIN OF THE A2 MATING TYPE OF PHYTOPHTHORA INFESTANS OUTSIDE MEXICO -(Abstract Only)     
- WRIGHT'S FIXATION INDEX ANALYSIS REVEALS THE PROBABLE MATING SYSTEM FOR 16 SPECIES OF PHYTOPHTHORA -(Abstract Only)     
- THE POPULATION GENETICS OF PHYTOPHTHORA -(Peer Reviewed Journal)     
- RESURGENCE OF THE IRISH POTATO FAMINE FUNGUS -(Peer Reviewed Journal)     
- WIDESPREAD DISTRIBUTION AND PROBABLE ORIGIN OF METALAXYL RESISTANCE IN     CLONAL GENOTYPES OF PHYTOPHTHORA INFESTANS IN THE UNITED STATES AND CANADA -(Peer Reviewed Journal)     

- ARS News Articles ARS, Collaborating Scientists Tackling "Tar Spot" Threat to U.S. CornGoodwin lab research interests
The Goodwin lab works on host-pathogen interactions between fungal pathogens of cereal crops and their hosts, specifically the genetics, genomics and population biology of the fungi that cause Septoria tritici blotch of wheat and tar spot of corn, and the genetics and mechanisms of resistance in their host plants. Septoria tritici blotch, caused by *Zymoseptoria tritici* (synonyms *Septoria tritici*, *Mycosphaeralla**graminicola*) is one of the most economically important diseases of wheat worldwide, particularly in areas with cool, wet weather. Tar spot is endemic to Latin America but was first detected in the U.S. during 2015 and has rapidly become the most important disease problem in the major corn-growing areas of the U.S. and Canada. Increasing the level of resistance of wheat and corn to their fungal pathogens is the most economically effective method to manage these diseases. The Goodwin lab has genetically mapped multiple resistance genes to these diseases in wheat and corn and developed molecular markers that can be used to transfer the resistance into improved cultivars. Several pathogen genomes have been sequenced and used to identify genes that may be involved in pathogenicity. In addition, leaf microbiomes of corn lines that differ in resistance to tar spot have been analyzed to identify organisms that could be useful for biological control of the causal fungus. This research should ultimately lead to improved lines of corn and wheat with increased resistance to fungal pathogens and a reduced need for harmful chemicals to increase yield.
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