U.S. flagAn official website of the United States government
                    Here's how you know **Official websites use .gov**
                            
                            A **.gov** website belongs to an official government organization in the United States.
 **Secure .gov websites use HTTPS**
                            
                            A **lock** (                            
                              A locked padlock                                                      
                            
                            ) or **https://** means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.


Menu Agricultural Research Service
						
                    U.S. DEPARTMENT OF AGRICULTURE
 Environmental Microbial & Food Safety Laboratory: Beltsville, MD
 close



    Research

                    Research Projects
                                    Publications
                                    Collaborations
                                    News
                People

                    Staff Listing
                                    Careers


        


                    About Us
                        Mission, Facilities, and Expertise
                                    Five Appropriated Projects
                                    Research Staff (by project group)Search small
                    Search
            
            ARS Home
                                About ARS
                                Contact Us




ARS Home Northeast Area Beltsville, Maryland (BARC) Beltsville Agricultural Research Center Environmental Microbial & Food Safety Laboratory People & Locations







Bradd Joseph Haley

                                                                (PhD)
                        Environmental Microbial & Food Safety Laboratory

                        




                        
                        Research Microbiologist
                        Phone: (301) 504-8960
                        
                        
                        Fax: (301) 504-6608(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsEvaluation of Genetic and Management Factors to Reduce Foodborne Pathogens and Antimicrobial Resistance in Dairy Cattle
                                                    In-House Appropriated
                                                                    (D)Accession Number: 440225Antimicrobial Resistance in the Gut Microflora of Young Calves
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 436659**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Disinfection of foodborne bacteria using the Contamination Sanitization Inspection and Disinfection (CSI-D) device bg
                                                        

- (Peer Reviewed Journal)Sanders, J., Alarcorn, V., Marquis, G., Tabb, A., Van Kessel, J.S., Sonnier, J.L., Haley, B.J., Baek, I., Qin, J., Kim, M.S., Vasefi, F., Sokolov, S., Hellberg, R. 2024. Disinfection of foodborne bacteria using the Contamination Sanitization Inspection and Disinfection (CSI-D) device bg. Food Microbiology. 10(9): Article e30490. https://doi.org/10.1016/j.heliyon.2024.e30490.Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin
                                                        

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Van Kessel, J.S. 2024. Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin. Foodborne Pathogens and Disease. 10: e0132. https://doi.org/10.1089/fpd.2023.0132.Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals
                                                        

- (Peer Reviewed Journal)Haley, B.J., Salaheen, S., Kim, S., Van Kessel, J.S. 2024. Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals. PLOS ONE. 10:e0296514. https://doi.org/10.1371/journal.pone.0296514.Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Karns, J., Van Kessel, J.S., Haley, B.J. 2024. Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd. Foodborne Pathogens and Disease. 21(5): e0090. https://doi.org/10.1089/fpd.2023.0090.Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains
                                                        

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2023. Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains. Antibiotics. 12(10): e1559. https://doi.org/10.3390/antibiotics12101559.Disinfection of Escherichia coli using the contamination sanitization inspection and disinfection (CSI-D) system
                                                        

- (Proceedings)Sanders, J., Alacom, V., Marquis, G., Tabb, A., Van Kessel, J.S., Sonnier, J.L., Haley, B.J., Baek, I., Qin, J., Kim, M.S., Vasefi, F., Sokolov, S., Hellberg, R. 2023. Disinfection of Escherichia coli using the contamination sanitization inspection and disinfection (CSI-D) system. Proceedings of SPIE. 125450F. https://doi.org/10.1117/12.2664049.Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves. Journal of Global Antimicrobial Resistance. 33:164-170. https://doi.org/10.1016/j.jgar.2023.02.022.Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains. Microbial Drug Resistance. https://doi.org/10.1089/mdr.2022.0266.Deep learning and multiwavelength fluorescence imaging for cleanliness assessment and disinfection in food services
                                                        

- (Peer Reviewed Journal)Gorji, H., Van Kessel, J.S., Haley, B.J., Husarik, K., Sonnier, J.L., Shahabi, S., Zadeh, H., Chan, D.E., Qin, J., Baek, I., Kim, M.S., Akhbardeh, A., Sohrabi, M., Kerge, B., Mckinnon, N., Vasefi, F., Tavakolian, K. 2022. Deep learning and multiwavelength fluorescence imaging for cleanliness assessment and disinfection in food services. Frontiers in Remote Sensing. https://doi.org/10.3389/fsens.2022.977770.Large scale genomic analysis identifies antimicrobial resistant and potentially pathogenic escherichia coli from dairy calves at commercial settings

- (Abstract Only)Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.RNA-Seq reveals differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells

- (Abstract Only)Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations
                                                        

- (Peer Reviewed Journal)Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations. Journal of Global Antimicrobial Resistance. https://doi.org.Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves
                                                        

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2022. Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves. PLoS ONE. 17(3):0265445. https://doi.org/10.1371/journal.pone.0265445.Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation
                                                        

- (Peer Reviewed Journal)Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation. Microbiology Resource Announcements. https://doi.org/10.1128.FI: The fecobiome initiative
                                                        

- (Review Article)Sapountzis, P., Teseo, S., Otani, S., Aarestrup, F., Forano, E., Suen, G., Tsiamis, G., Van Kessel, J.S., Haley, B.J., Huws, S. 2022. FI: The fecobiome initiative. Foodborne Pathogens and Disease. 19(17):441-447. https://doi.org/10.1089/fpd.2021.0082.The resistome of the bovine gastrointestinal tract
                                                        

- (Literature Review)Haley, B.J., Van Kessel, J.S. 2021. The resistome of the bovine gastrointestinal tract. Current Opinion in Biotechnology. 73:213-219. https://doi.org/10.1016/j.copbio.2021.07.025.High-resolution comparative genomics of Salmonella Kentucky aids source tracing and detection of ST198 and ST152 lineage-specific mutations

- (Peer Reviewed Journal)Soltys, R.C., Sakomoto, C., Oltean, H.N., Guard, J.Y., Haley, B.J., Shah, D.H. 2021. High-resolution comparative genomics of Salmonella Kentucky aids source tracing and detection of ST198 and ST152 lineage-specific mutations. Frontiers in Sustainable Food Systems. 5:6953368.Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland
                                                        

- (Peer Reviewed Journal)Slowey, R., Kim, S., Prendergast, D., Madigan, G., Van Kessel, J.S., Haley, B.J. 2021. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland. Zoonoses and Public Health. (10):1011. https://doi.org/10.1111/zph.12884.Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States
                                                        

- (Peer Reviewed Journal)Kim, S., Van Kessel, J.S., Haley, B.J. 2021. Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States. Journal of Global Antimicrobial Resistance. https://doi.org/10.1016/j.jgar.2021.04.024.Large scale genome-wide analysis identifies characteristics of multidrug-resistant Escherichia coli potentially associated with persistence in the dairy calf gut

- (Abstract Only)Microbial communities and resistomes of young calf feces

- (Abstract Only)Genomic analysis of antibiotic-resistant and susceptible Escherichia coli isolated from bovine sources in Maputo, Mozambique
                                                        

- (Peer Reviewed Journal)Taviani, E., Muchongo, A., Kim, S., Van Kessel, J.S., Haley, B.J. 2021. Genomic analysis of antibiotic-resistant and susceptible Escherichia coli isolated from bovine sources in Maputo, Mozambique. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2020.2901.Metagenomic analysis of the microbial communities and resistomes of feces from veal calves
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2020. Metagenomic analysis of the microbial communities and resistomes of feces from veal calves. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2020.609950.Differences in the microbial community and resistome structures of feces from pre-weaned calves and lactating dairy cows
                                                        

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2020. Differences in the microbial community and resistome structures of feces from pre-weaned calves and lactating dairy cows. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2768.Interaction of Salmonella enterica with bovine epithelial cells demonstrates serovar-specific attachment and invasion patterns
                                                        

- (Peer Reviewed Journal)Salaheen, S., Sonnier, J.L., Kim, S., Haley, B.J., Van Kessel, J.S. 2020. Interaction of Salmonella enterica with bovine epithelial cells demonstrates serovar-specific attachment and invasion patterns. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2019.2765.Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
                                                        

- (Peer Reviewed Journal)Bickhart, D.M., Watson, M., Koren, S., Panke-Buisse, K., Cersosimo, L.M., Press, M.O., Van Tassell, C.P., Van Kessel, J.S., Haley, B.J., Kim, S., Heiner, C., Suen, G., Bakshy, K., Liachko, I., Sullivan, S.T., Myer, P.R., Ghurye, J., Pop, M., Weimer, P., Phillippy, A., Smith, T.P. 2019. Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation. Genome Biology. 20:153. https://doi.org/10.1186/s13059-019-1760-x.Longitudinal analysis of Salmonella Kentucky genomes from a long-term dairy herd epidemic reveals potential mechanisms of strain succession

- (Abstract Only)Seon Woo, K., Salaheen, S., Van Kessel, J.S., Haley, B.J. 2019. Longitudinal analysis of Salmonella Kentucky genomes from a long-term dairy herd epidemic reveals potential mechanisms of strain succession. American Society for Microbiology. p. 1.Metagenomic analysis of fecal microbiome in Escherichia coli O157:H7-shedding and non-shedding animals from a single dairy farm
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Karns, J.S., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2019. Metagenomic analysis of fecal microbiome in Escherichia coli O157:H7-shedding and non-shedding animals from a single dairy farm. Food Control. 102:76-80. https://doi.org/10.1016/j.foodcont.2019.03.022.Salmonella enterica serovar Kentucky recovered from human clinical cases in Maryland, USA (2011 to 2015)
                                                        

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Haendiges, J., Keller, E., Torpey, D., Kim, A., Crocker, K., Myers, R.A., Van Kessel, J.S. 2019. Salmonella enterica serovar Kentucky recovered from human clinical cases in Maryland, USA (2011 to 2015). Journal of Clinical Microbiology. 66:382-392. https://doi.org/10.1111/zph.12571.Complete genome sequence of a Salmonella enterica subsp. enterica serovar Fresno isolate recovered from beef cattle lymph nodes
                                                        

- (Peer Reviewed Journal)Haley, B.J., Smith, T.P., Harhay, G.P., Loneragan, G.H., Webb, H.E., Bugarel, M., Kim, S., Van Kessel, J.S., Harhay, D.M. 2019. Complete genome sequence of a Salmonella enterica subsp. enterica serovar Fresno isolate recovered from beef cattle lymph nodes. Microbiology Resource Announcements. 8(2):e01338-18. https://doi.org/10.1128/MRA.01338-18.Diversity of extended-spectrum cephalosporin-resistant Escherichia coli in feces from calves and cows on Pennsylvania dairy farms
                                                        

- (Peer Reviewed Journal)Salaheen, S., Cao, H., Sonnier, J.L., Kim, S., Del Collo, L.P., Hovingh, E., Karns, J.S., Haley, B.J., Van Kessel, J.S. 2019. Diversity of extended-spectrum cephalosporin-resistant Escherichia coli in feces from calves and cows on Pennsylvania dairy farms. Foodborne Pathogens and Disease. https://doi.org/10.1089/fpd.2018.2579.Microbial communities, resistomes, and virulomes of veal calves and dairy animals with a side-note on Salmonella Kentucky

- (Abstract Only)Haley, B.J., Salaheen, S., Kim, S., Van Kessel, J.S. 2018. Microbial communities, resistomes, and virulomes of veal calves and dairy animals with a side-note on Salmonella Kentucky. Microbiology. p. 1.Fecal metagenome sequences from lactating dairy cows shedding Escherichia coli O157:H7
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Karn, J.S., Haley, B.J., Van Kessel, J.S. 2018. Fecal metagenome sequences from lactating dairy cows shedding Escherichia coli O157:H7. Microbiology Resource Announcements. 7:e01279-18. https://doi.org/10.1128/MRA.01279-18.Antimicrobial resistance in fecal Escherichia coli and Salmonella enterica in dairy calves: a systematic review
                                                        

- (Peer Reviewed Journal)Springer, H., Denagamage, T., Fenton, G., Haley, B.J., Van Kessel, J.S., Hovingh, E. 2019. Antimicrobial resistance in fecal Escherichia coli and Salmonella enterica in dairy calves: a systematic review. Foodborne Pathogens and Disease. 16:23-24. https://doi.org/10.1089/fpd.2018.2529.Antimicrobial resistance among Escherichia coli isolated from veal calf operations in Pennsylvania
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Cao, H., Wolfgang, D., Karns, J., Haley, B.J., Hovingh, E., Van Kessel, J.S. 2019. Antimicrobial resistance among Escherichia coli isolated from veal calf operations in Pennsylvania. Foodborne Pathogens and Disease. 16:74-80. https://doi.org/10.1089/fpd.2018.2530.Whole genome sequencing and comparative genome analysis of human and bovine Salmonella Dublin isolates

- (Abstract Only)Kim, S., Harhay, D.M., Salaheen, S., Van Kessel, J.S., Haley, B.J. 2018. Whole genome sequencing and comparative genome analysis of human and bovine Salmonella Dublin isolates. American Society for Microbiology.Age-dependent differences in gut microbial communities and resistomes of veal calves

- (Abstract Only)Salaheen, S., Seon-Woo, K., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. American Society for Microbiology. p. 1.Genetic diversity of dairy farm – associated Listeria monocytogenes
                                                        

- (Peer Reviewed Journal)Kim, S., Haendiges, J., Keller, E.N., Myers, R., Kim, A., Lombard, J.E., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2018. Genetic diversity of dairy farm – associated Listeria monocytogenes. PLoS One. 13(5):e0197053. https://doi.org/10.1371/journal.pone.0197053.Age-dependent differences in gut microbial communities and resistomes of veal calves

- (Abstract Only)Salaheen, S., Kim, S., Hovingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. BARC Poster Day. p. 1.Genetic diversity of multi-drug resistant and antibiotic susceptible Escherichia coli from dairy cows and calves

- (Abstract Only)Haley, B.J., Kim, S., Salaheen, S., Van Kessel, J.S. 2018. Genetic diversity of multi-drug resistant and antibiotic susceptible Escherichia coli from dairy cows and calves. American Society for Microbiology Annual Meeting. p. 1.Age-dependent differences in gut microbial communities and resistomes of veal calves

- (Abstract Only)Salaheen, S., Kim, S., Horvingh, E., Haley, B.J., Van Kessel, J.S. 2018. Age-dependent differences in gut microbial communities and resistomes of veal calves. American Society for Microbiology. p. 1.Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic E. coli in bulk tank milk and milk filters from U.S. dairy operations in 2014
                                                        

- (Peer Reviewed Journal)Sonnier, J.L., Karns, J.S., Lombard, J.E., Kopral, C.A., Haley, B.J., Kim, S., Van Kessel, J.S. 2018. Prevalence of Salmonella enterica, Listeria monocytogenes, and pathogenic Escherichia coli in bulk tank milk and milk and milk filters from U.S. dairy operations in the National Animal Health Monitoring System Dairy 2014 study. Journal of Dairy Science. 101:1943-1956. https://doi.org/10.3168/jds.2017-13546.Alternative growth promoters alter broiler gut microbiome and enhance body weight gain
                                                        

- (Peer Reviewed Journal)Salaheen, S., Kim, S., Haley, B.J., Van Kessel, J.S., Biswas, D. 2017. Alternative growth promoters alter broiler gut microbiome and enhance body weight gain. Front. Microbiol.8:2088. BMC Microbiome. https://doi.org/10.3389/fmicb.2017.02088.Genome sequences of Salmonella enterica subsp. Kentucky ST152 isolated from dairy cows in the United States

- (Peer Reviewed Journal)Genome sequences of thirty Escherichia coli O157:H7 isolates recovered from a single dairy farm and its associated off-site heifer raising facility

- (Peer Reviewed Journal)Kim, S., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2017. Genome sequences of thirty Escherichia coli O157:H7 isolates recovered from a single dairy farm and its associated off-site heifer raising facility. Genome Announcements. https://doi.org/10.1128/genomeA.00814-17.Genome sequences of five multidrug resistant Escherichia coli ST117 isolates recovered from dairy calves

- (Peer Reviewed Journal)Kim, S., Karns, J.S., Van Kessel, J.S., Haley, B.J. 2017. Genome sequences of five multidrug resistant Escherichia coli ST117 isolates recovered from dairy calves. Genome Announcements. https://doi.org/10.1128/genomeA.00732-17.Alternative growth promoters alter broiler gut microbiome and enhance body weight gain

- (Abstract Only)Salaheen, S., Kim, S., Haley, B.J., Van Kessel, J.S., Biswas, D. 2017. Alternative growth promoters alter broiler gut microbiome and enhance body weight gain. American Society for Microbiology Branch Meeting. May 30, 2017.Genomic and metagenomic analysis of antibiotic resistance in dairy animals

- (Abstract Only)Haley, B.J., Kim, S., Huilin, C., Karns, J.S., Van Kessel, J.S. 2017. Genomic and metagenomic analysis of antibiotic resistance in dairy animals. American Society of Animal Science Annual Meeting. Baltimore, MD on July 8-12, 2017.Genomic and metagenomic diversity of antibiotic resistance in dairy animals

- (Abstract Only)Haley, B.J., Kim, S., Cao, H., Karns, J., Van Kessel, J.S. 2017. Genomic and metagenomic diversity of antibiotic resistance in dairy animals. American Society for Microbiology Conference. New Orleans, LA on June 1-5, 2017.The Genome sequences of four non-human/non-clinical Salmonella enterica serovar Kentucky ST198 isolates recovered between 1972 and 1973

- (Peer Reviewed Journal)Kim, S., Haley, B.J., Roberson, D., Allard, M., Hammack, T., Brown, E.W., Van Kessel, J.S. 2017. The Genome sequences of four non-human/non-clinical Salmonella enterica serovar Kentucky ST198 isolates recovered between 1972 and 1973. Genome Announcements. https://doi.org/10.1128/genomeA.01699-16.Prevalence, antimicrobial resistance, and molecular characterization of Campylobacter spp. in bulk tank milk and milk filters from US dairies

- (Peer Reviewed Journal)Del Collo, L.P., Karns, J.S., Biswas, D., Lombard, J.E., Haley, B.J., Kristensen, C., Kopral, C.A., Fossler, C.P., Van Kessel, J.S. 2017. Prevalence, antimicrobial resistance, and molecular characterization of Campylobacter spp. in bulk tank milk and milk filters from US dairies. Journal of Dairy Science. 100:3470-3479.Genome sequences of two Salmonella enterica Serovar Kentucky isolates recovered from poultry carcasses in the United States

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Liljebjelke, K., Guard, J.Y., Allard, M., Van Kessel, J.S. 2016. Genome sequences of two Salmonella enterica Serovar Kentucky isolates recovered from poultry carcasses in the United States. Genome Announcements. doi: 10.1128/genomeA.01289-16.Genomic and evolutionary analysis of two Salmonella enterica serovar Kentucky sequence types isolated from bovine and poultry sources in North America

- (Peer Reviewed Journal)Haley, B.J., Kim, S., Pettengill, J., Luo, Y., Karns, J.S., Van Kessel, J.S. 2016. Genomic and evolutionary analysis of two Salmonella enterica serovar Kentucky wequence types isolated from bovine and poultry sources in North America. PLoS One. doi: 10.1371/journal.pone.0161225.Genome sequences of Ralstonia insidiosa type strain ATCC 49129 and strain FC1138, a strong biofilm producer isolated from a fresh-cut produce-processing plant

- (Peer Reviewed Journal)Xu, Y., Nagy, A., Liu, N., Nou, X., Yan, X., Haley, B.J., Kim, S. 2016. Genome sequences of Ralstonia insidiosa type strain ATCC 49129 and strain FC1138, a strong biofilm producer isolated from a fresh-cut produce-processing plant. American Society for Microbiology, Genome Announcements. 4(4):e00847-17.Comparison of microbial communities isolated from feces of asymptomatic Salmonella-shedding and non-Salmonella shedding dairy cows

- (Peer Reviewed Journal)Haley, B.J., Pettengill, J., Gorham, S., Ottesen, A., Karns, J.S., Van Kessel, J.S. 2016. Comparison of microbial communities isolated from feces of asymptomatic Salmonella-shedding and non-Salmonella shedding dairy cows. Frontiers in Microbiology. 7:691.The complete genome sequence and methylome of Salmonella enterica subsp. enterica serovar Cerro, a frequent dairy cow strain

- (Peer Reviewed Journal)Haley, B.J., Pirone, C., Muravanda, T., Brown, E., Allard, M., Van Kessel, J.S., Karns, J.S. 2016. The complete genome sequence and methylome of Salmonella enterica subsp. enterica serovar Cerro, a frequent dairy cow strain. Genome Announcements. 4:E01350-15.Metagenomic analysis of the bovine hindgut from Salmonella Kentucky and Cerro-shedding dairy cows

- (Abstract Only)Haley, B.J., Karns, J.S., Van Kessel, J.S. 2015. Metagenomic analysis of the bovine hindgut from Salmonella Kentucky and Cerro-shedding dairy cows. Symposium on Gut Health in Production of Food Animals. Meeting Abstract. Kansas City, Missouri. November 9-11, 2015.Salmonella enterica serovar Kentucky isolates from dairy cows and poultry demonstrate different evolutionary histories and host-specific polymorphisms

- (Abstract Only)Haley, B.J., Van Kessel, J.S., Karns, J.S. 2015. Salmonella enterica serovar Kentucky isolates from dairy cows and poultry demonstrate different evolutionary histories and host-specific polymorphisms. Meeting Abstract. ASM Conference, Washington, DC. September 24-27, 2015.Diversity of Listeria monocytogenes within a U.S. dairy herd, 2004-2010

- (Peer Reviewed Journal)Haley, B.J., Sonnier, J.L., Ynte, H., Karns, J.S., Van Kessel, J.S. 2015. Diversity of Listeria monocytogenes within a U.S. dairy herd, 2004-2010. Foodborne Pathogens and Disease. 12:844-850.Metagenomic analysis of the bovine hindgut from Salmonella Kentucky and Cerro-shedding dairy cows

- (Abstract Only)Haley, B.J., Pettengill, J., Gorham, S., Ottesen, A., Karns, J.S., Van Kessel, J.S. 2015. Metagenomic analysis of the bovine hindgut from Salmonella Kentucky and Cerro-shedding dairy cows. Meeting Abstract. American Society for Microbiology, New Orleans, LA, May 30-June 2, 2015.Salmonella enterica serovar Kentucky isolates from dairy cows and poultry demonstrate different evolutionary histories and host-specific polymorphisms

- (Abstract Only)Haley, B.J., Karns, J.S., Van Kessel, J.S. 2015. Salmonella enterica serovar Kentucky isolates from dairy cows and poultry demonstrate different evolutionary histories and host-specific polymorphisms. Conference Abstract. American Society for Microbiology Next Generation Sequencing Conference. Washington, DC, September 24-27, 2015.Improvements to a PCR-based serogrouping scheme for Salmonella enterica from dairy farm samples

- (Peer Reviewed Journal)Karns, J.S., Haley, B.J., Van Kessel, J.S. 2015. Improvements to a PCR-based serogrouping scheme for Salmonella enterica from dairy farm samples. Journal of Food Protection. 78:1182-1185.Molecular detection of the index case of a subclinical salmonella Kentucky epidemic on a dairy farm

- (Peer Reviewed Journal)Haley, B.J., Allard, M., Brown, E., Hovingh, E., Karns, J.S., Van Kessel, J.S. 2014. Molecular detection of the index case of a subclinical salmonella Kentucky epidemic on a dairy farm. Epidemiology and Infection. DOI: 10.1017/S.0950268814001289.Genome sequences of ten Salmonella enterica serovars isolated from a single dairy farm

- (Peer Reviewed Journal)Haley, B.J., Luo, Y., Wang, C., Pettengill, J., Allard, M., Brown, E., Karns, J.S., Van Kessel, J.S. 2014. Genome sequences of ten Salmonella enterica serovars isolated from a single dairy farm. Genome Announcements. 2(2):00082-14.Evolution of Salmonella Cerro on a dairy farm over an eight-year period

- (Abstract Only)Haley, B.J., Luo, Y., Allard, M., Brown, E., Karns, J.S., Van Kessel, J.S. 2014. Evolution of Salmonella Cerro on a dairy farm over an eight-year period. BARC Poster Day.Comparative genomics reveals the source and mechanisms of a Salmonella Kentucky epidemic on a dairy farm

- (Abstract Only)Haley, B.J., Allard, M., Brown, E., Hovingh, E., Karns, J.S., Van Kessel, J.S. 2013. Comparative genomics reveals the source and mechanisms of a Salmonella Kentucky epidemic on a dairy farm. BARC Poster Day.Comparative genomics reveals the source and mechanisms of a Salmonella Kentucky epidemic on a dairy farm

- (Abstract Only)Haley, B.J., Allard, M., Hovingh, E., Karns, J.S., Van Kessel, J.S. 2013. Comparative genomics reveals the source and mechanisms of a Salmonella Kentucky epidemic on a dairy farm. Meeting Abstract. American Society of Microbiology. Denver, CO, May 18-21, 2013.Genomic investigation of Salmonella enterica sequences associated with long-term colonization of the bovine gut

- (Abstract Only)Haley, B.J., Karns, J.S., Van Kessel, J.S. 2012. Genomic investigation of Salmonella enterica sequences associated with long-term colonization of the bovine gut. Meeting Abstract.
                    ARS News Articles
                            item
                                                USDA's Agricultural Research Service Honors Scientists of the Year


Return to top


Connect with ARS Sign up


ARS Home
                            USDA.gov
                            Plain Writing
                            Policies & Links
                            Civil Rights Statements
                            FOIA
                            Accessibility Statement
                            Privacy Policy
                            Non-Discrimination Statement
                            Quality of Information
                            USA.gov
                            WhiteHouse.gov