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                    U.S. DEPARTMENT OF AGRICULTURE
 Cereal Crops Improvement Research: Fargo, ND
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ARS Home Plains Area Fargo, North Dakota Edward T. Schafer Agricultural Research Center Cereal Crops Improvement Research People & Locations







Justin D Faris
                        Cereal Crops Improvement Research

                        




                        
                        Research Geneticist (Plants)
                        Phone: (701) 239-1339
                        
                        
                        Fax: (701) 239-1369(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsImprovement of Disease and Pest Resistance in Barley, Durum, Oat, and Wheat Using Genetics and Genomics
                                                    In-House Appropriated
                                                                    (D)Accession Number: 444812Leveraging high-throughput genotyping and phenotyping technologies to accelerate wheat improvement
                                                    Reimbursable Cooperative Agreement
                                                                    (R)Accession Number: 441608Genetic Analysis and Improvement of Wheat for Resistance to Foliar Disease
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 445714Improvement of Durum and Bread Wheat for Resistance to Fusarium Head Blight, Stem Rust, and Hessian Fly
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 436874Genomic Analysis of Septoria Nodorum Blotch Susceptibility Genes in Wheat
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 437981**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Molecular mapping of a novel genetic locus governing enhanced susceptibility to tan spot in durum wheat

- (Abstract Only)Pfaff, T., Singh, G., Running, K., Szabo-Hever, A., Faris, J.D. 2024. Molecular mapping of a novel genetic locus governing enhanced susceptibility to tan spot in durum wheat. Meeting Abstract. Poster No. PO0379.Identification of QTLs associated with yield components, agronomic traits, and kernel parameters in hard red spring wheat

- (Abstract Only)Kumari, P., Peters Haugrud, A.R., Xu, S.S., Zhang, Q., Green, A., Faris, J.D. 2024. Identification of QTLs associated with yield components, agronomic traits, and kernel parameters in hard red spring wheat. Meeting Abstract. Poster No. PE0379.Genetic mapping of resistance QTLs to bacterial leaf streak in wheat

- (Abstract Only)Acharya, K., Green, A., Liu, Z., Schachterle, J., Kumari, P., Manan, F., Faris, J.D. 2024. Genetic mapping of resistance QTLs to bacterial leaf streak in wheat. Meeting Abstract. Poster No. PO0389.Molecular cloning of the septoria nodorum blotch susceptibility gene Snn2 in wheat

- (Abstract Only)Seneviratne, S., Zhang, Z., Running, K., Peters Haugrud, A.R., Szabo-Hever, A., Singh, G., Acharya, K., Fiedler, J.D., Mclean, P., Xu, S.S., Yang, S., Friesen, T.L., Faris, J.D. 2024. Molecular cloning of the septoria nodorum blotch susceptibility gene Snn2 in wheat. Meeting Abstract. Poster No. PE0390.Identification of robust yield quantitative trait loci derived from cultivated emmer for durum wheat improvement
                                                        

- (Peer Reviewed Journal)Peters Haugrud, A.R., Saini Sharma, J., Zhang, Q., Green, A., Xu, S.S., Faris, J.D. 2023. Identification of robust yield QTL derived from cultivated emmer for durum wheat improvement. The Plant Genome. https://doi.org/10.1002/tpg2.20398.The necrotrophic pathogen Parastagonospora nodorum is a master manipulator of wheat defense
                                                        

- (Review Article)Kariyawasam, G., Nelson, A., Williams, S., Solomon, P., Faris, J.D., Friesen, T.L. 2023. The necrotrophic pathogen Parastagonospora nodorum is a master manipulator of wheat defense. Molecular Plant-Microbe Interactions. https://doi.org/10.1094/MPMI-05-23-0067-IRW.Sequencing 4.3 million mutations in wheat promoters to understand and modify gene expression
                                                        

- (Peer Reviewed Journal)Zhang, J., Xiong, H., Burguener, G.F., Woods, D.P., Liu, Q., Debernardi, J.M., Akhunova, A., Garland Campbell, K.A., Kianian, S., Brown Guedira, G.L., Pozniak, C., Faris, J.D., Akhunov, E., Dubcovsky, J. 2023. Sequencing 4.3 million mutations in wheat promoters to understand and modify gene expression. Proceedings of the National Academy of Sciences (PNAS). 120(38) e2306494120. https://doi.org/10.1073/pnas.2306494120.Linkage drag analysis in three Aegilops speltoides introgressions 
carrying Sr47 in modern durum and hard red spring wheat germplasm
                                                        

- (Peer Reviewed Journal)Klindworth, D.L., Salsman, E., Underdahl, J., Elias, E.M., Green, A.J., Dykes, L., Faris, J.D., Xu, S.S. 2023. Linkage drag analysis in three Aegilops speltoides introgressions carrying Sr47 in modern durum and hard red spring wheat germplasm. Theoretical and Applied Genetics. 136. Article 168. https://doi.org/10.1007/s00122-023-04409-8.Genome-wide association mapping of resistance to the foliar diseases septoria nodorum blotch and tan spot in a global winter wheat collection.
                                                        

- (Peer Reviewed Journal)Peters Haugrud, A., Shi, G., Seneviratne, S., Running, K., Zhang, Z., Singh, G., Szabo-Hever, A., Acharya, K., Friesen, T.L., Liu, Z., Faris, J.D. 2023. Genome-wide association mapping of resistance to the foliar diseases septoria nodorum blotch and tan spot in a global winter wheat collection. Molecular Breeding. 43. Article 54. https://doi.org/10.1007/s11032-023-01400-5.Association mapping of tan spot resistance in the Global Durum Panel
                                                        

- (Peer Reviewed Journal)Szabo-Hever, A., Singh, G., Peters Haugrud, A., Running, K., Seneviratne, S., Zhang, Z., Shi, G., Bassi, F., Maccaferi, M., Cattivelli, L., Tuberosa, R., Friesen, T.L., Liu, Z., Xu, S.S., Faris, J.D. 2023. Association mapping of tan spot resistance in the Global Durum Panel. Phytopathology. 113(10):1967-1978. https://doi.org/10.1094/PHYTO-02-23-0043-R.Prevalence and importance of the necrotrophic effector gene ToxA in Bipolaris sorokiniana populations collected from spring wheat and barley
                                                        

- (Peer Reviewed Journal)Manan, F., Shi, G., Gong, H., Hou, H., Khan, H., Leng, Y., Castell-Miller, C., Ali, S., Faris, J.D., Zhong, S. 2023. Prevalence and importance of the necrotrophic effector gene ToxA in Bipolaris sorokiniana populations collected from spring wheat and barley. Plant Disease. https://doi.org/10.1094/PDIS-08-22-2011-RE.Optimization of highly efficient exogenous-DNA-free Cas9-ribonucleoprotein mediated gene editing in disease
susceptibility loci in wheat (Triticum aestivum L.)
                                                        

- (Peer Reviewed Journal)Poddar, S., Tanaka, J., Running, K.L., Kariyawasam, G., Faris, J.D., Friesen, T.L., Cho, M., Kate, J.H., Staskawicz, B. 2023. Optimization of highly efficient exogenous-DNA-free Cas9-ribonucleoprotein mediated gene editing in disease susceptibility loci in wheat (Triticum aestivum L.). Frontiers in Plant Science. 13. Article 1084700. https://doi.org/10.3389/fpls.2022.1084700.Genome-wide association analyses of leaf rust resistance in cultivated emmer wheat
                                                        

- (Peer Reviewed Journal)Lhamo, D., Sun, Q., Zhang, Q., Li, X., Fiedler, J.D., Xia, G., Faris, J.D., Gu, Y.Q., Gill, U., Cai, X., Acevedo, M., Xu, S.S. 2023. Genome-wide association analyses of leaf rust resistance in cultivated emmer wheat. Theoretical and Applied Genetics. 136. Article 20. https://doi.org/10.1007/s00122-023-04281-6.Development of diagnostic molecular markers for the multi-pathogen susceptibility gene Tsn1

- (Abstract Only)Running, K., Singh, G., Szabo-Hever, A., Peters Haugrud, A., Zhang, Z., Seneviratne, S., Fiedler, J.D., Friesen, T.L., Faris, J.D. 2022. Development of diagnostic molecular markers for the multi-pathogen susceptibility gene Tsn1 [abstract]. Plant and Animal Genome 30 Conference. Poster No. PO0535.Towards the molecular cloning of tan spot susceptibility gene Tsc2 in wheat

- (Abstract Only)Singh, G., Running, K., Peters Haugrud, A., Seneviratne, S., Zhang, Z., Szabo-Hever, A., Acharya, K., Liu, Z., Dubcovsky, J., Faris, J.D. 2022. Towards the molecular cloning of tan spot susceptibility gene Tsc2 in wheat [abstract]. Plant and Animal Genome 30 Conference. Poster No. PE0550.Genome-wide association mapping of resistance to the foliar diseases septoria nodorum blotch and tan spot in a global winter wheat (Triticum aestivum L.) collection

- (Abstract Only)Peters Haugrud, A., Shi, G., Seneviratne, S., Running, K., Zhang, Z., Singh, G., Szabo-Hever, A., Acharya, K., Friesen, T.L., Liu, Z., Faris, J.D. 2022. Genome-wide association mapping of resistance to the foliar diseases septoria nodorum blotch and tan spot in a global winter wheat (Triticum aestivum L.) collection [abstract]. Plant and Animal Genome 30 Conference. Poster No. PO0549.Identification of novel QTLs associated with yield components in an intravarietal hard red spring wheat population

- (Abstract Only)Kumari, P., Peters Haugrud, A., Xu, S.S., Zhang, Q., Green, A., Faris, J.D. 2022. Identification of novel QTLs associated with yield components in an intravarietal hard red spring wheat population [abstract]. Plant and Animal 30 Conference . Poster No. PE0488.Genetic diversity and marker-assisted elimination of the Snn1 gene in wheat

- (Abstract Only)Seneviratne, S., Shi, G., Szabo-Hever, A., Zhang, Z., Peters Haugrud, A., Running, K., Singh, G., Nandety, R., Fiedler, J.D., Xu, S.S., Friesen, T.L., Mcclean, P., Faris, J.D. 2022. Genetic diversity and marker-assisted elimination of the Snn1 gene in wheat. Meeting Abstract. Poster No. PO0487.Identification of stable QTL controlling multiple yield components in a durum x cultivated emmer population under field and greenhouse conditions
                                                        

- (Peer Reviewed Journal)Peters Haugrud, A., Zhang, Q., Green, A., Xu, S.S., Faris, J.D. 2022. Identification of stable QTL controlling multiple yield components in a durum x cultivated emmer population under field and greenhouse conditions. Genes, Genomes, Genetics. 13(2). https://doi.org/10.1093/g3journal/jkac281.Genetic analysis of stable yield component QTL in tetraploid wheat

- (Abstract Only)Peters Haugrud, A., Zhang, Q., Green, A., Xu, S.S., Faris, J.D. 2022. Genetic analysis of stable yield component QTL in tetraploid wheat [abstract]. From Seed to Pasta IV. p.8.Genomic analysis and delineation of the tan spot susceptibility locus Tsc1 in wheat
                                                        

- (Peer Reviewed Journal)Running, K., Momotaz, A., Kariyawasam, G., Zurn, J., Acevedo, M., Carter, A., Liu, Z., Faris, J.D. 2022. Genomic analysis and delineation of the tan spot susceptibility locus Tsc1 in wheat. Frontiers in Plant Science. 13:1-10. https://www.frontiersin.org/articles/10.3389/fpls.2022.793925/full.A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis
                                                        

- (Peer Reviewed Journal)Shi, G., Kariyawasam, G., Liu, S., Leng, Y., Zhong, S., Ali, S., Moolhuijzen, P., Moffat, C., Rasmussen, J., Friesen, T.L., Faris, J.D., Liu, Z. 2022. A conserved hypothetical gene is required but not sufficient for Ptr ToxC production in Pyrenophora tritici-repentis. Molecular Plant-Microbe Interactions. 35(4). https://apsjournals.apsnet.org/doi/10.1094/MPMI-12-21-0299-R.Genetics of resistance to septoria nodorum blotch in wheat
                                                        

- (Review Article)Peters Haugrud, A., Zhang, Z., Friesen, T.L., Faris, J.D. 2022. Genetics of resistance to septoria nodorum blotch in wheat. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04036-9.Did the Parastagonospora nodorum necrotrophic effector SnTox3 evolved from SnTox5?

- (Abstract Only)Kariyawasam, G.K., Wyatt, N.A., Liu, Z., Stukenbrock, E.H., Faris, J.D., Friesen, T.L. 2022. Did the Parastagonospora nodorum necrotrophic effector SnTox3 evolved from SnTox5? [abstract]. Plant and Animal Genome Conference. Session No.7178.Parastagonospora nodorum necrotrophic effector SnTox5 facilitates the colonization of leaf mesophyll in the presence and absence of Snn5

- (Abstract Only)Kariyawasam, G.K., Richards, J.K., Wyatt, N.A., Running, K.L., Liu, Z., Faris, J.D., Friesen, T.L. 2022. Parastagonospora nodorum necrotrophic effector SnTox5 facilitates the colonization of leaf mesophyll in the presence and absence of Snn5 [abstract]. Plant and Animal Genome Conference. Session No.7511.Characterization of the role of the Parastagonospora nodorum effector SnTox267 in virulence on wheat using confocal microscopy

- (Abstract Only)Nelson, A.C., Kariyawasam, G.K., Seneviratne, S., Borowicz, P., Faris, J.D., Liu, Z., Friesen, T.L. 2022. Characterization of the role of the Parastagonospora nodorum effector SnTox267 in virulence on wheat using confocal microscopy. In: Fungal Genetics Conference, March 15-20, 2022, Pacific Grove, CA.The Parastagonospora nodorum necrotrophic effector SnTox3 likely evolved from a duplication event of SnTox5

- (Abstract Only)Kariyawasam, G.K., Wyatt, N.A., Liu, Z., Stukenbrock, E.H., Faris, J.D., Friesen, T.L. 2022. The Parastagonospora nodorum necrotrophic effector SnTox3 likely evolved from a duplication event of SnTox5. In: Fungal Genetics Conference, Mar. 15-20,2022, Pacific Grove, CA.Impact of temperature and time on Cas9-ribonucleoprotein mediated gene editing in wheat protoplasts and immature embryos
                                                        

- (Pre-print Publication)Poddar, S., Tanaka, J., Running, K.L., Kariyawasam, G., Faris, J.D., Friesen, T.L., Cho, M., Kate, J.H., Staskawicz, B. 2022. Impact of temperature and time on Cas9-ribonucleoprotein mediated gene editing in wheat protoplasts and immature embryos. bioRxiv. https://doi.org/10.1101/2022.04.05.487229.Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation
                                                        

- (Peer Reviewed Journal)Jordan, K., Bradbury, P., Miller, Z., Nyine, M., He, F., Guttieri, M.J., Brown Guedira, G.L., Buckler Iv, E.S., Jannink, J., Akhunov, E., Ward, B.P., Bai, G., Bowden, R.L., Fiedler, J.D., Faris, J.D. 2021. Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation. G3 Genes/Genomes/Genetics. https://doi.org/10.1101/2021.06.10.447944.Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement
                                                        

- (Peer Reviewed Journal)Gaurav, K., Arora, S., Silva, P., Sanchez-Martinez, J., Horsnell, R., Gao, L., Brar, G., Widrig, V., Raupp, J., Singh, N., Xu, S.S., Brown Guedira, G.L., Faris, J.D., Wulff, B.B., et al. 2021. Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology. 40:422-431. https://doi.org/10.1038/s41587-021-01058-4.A triple threat: the Parastagonospora nodorum SnTox267 effector exploits three distinct host genetic factors to cause disease in wheat
                                                        

- (Pre-print Publication)Richards, J.K., Kariyawasam, G.K., Seneviratne, S., Wyatt, N., Xu, S.S., Liu, Z., Faris, J.D., Friesen, T.L. 2021. A triple threat: the Parastagonospora nodorum SnTox267 effector exploits three distinct host genetic factors to cause disease in wheat. bioRxiv. https://doi.org/10.1101/2021.02.25.432871.A triple threat: The Parastagonospora nodorum SnTox267 effector exploits three distinct host genetic factors to cause disease in wheat
                                                        

- (Peer Reviewed Journal)Richards, J.K., Seneviratne, S., Wyatt, N., Xu, S.S., Liu, Z., Faris, J.D., Friesen, T.L. 2021. A triple threat: The Parastagonospora nodorum SnTox267 effector exploits three distinct host genetic factors to cause disease in wheat. New Phytologist. https://doi.org/10.1111/nph.17601.The Parastagonospora nodorum necrotrophic effector SnTox5 targets the wheat gene Snn5 and facilitates entry into the leaf mesophyll
                                                        

- (Pre-print Publication)Kariyawasam, G.K., Richards, J.K., Wyatt, N.A., Running, K., Xu, S.S., Liu, Z., Borowicz, P., Faris, J.D., Friesen, T.L. 2021. The Parastagonospora nodorum necrotrophic effector SnTox5 targets the wheat gene Snn5 and facilitates entry into the leaf mesophyll. bioRxiv. https://doi.org/10.1101/2021.02.26.433117.The Parastagonospora nodorum necrotrophic effector SnTox5 targets the wheat gene Snn5 and facilitates entry into the leaf mesophyll
                                                        

- (Peer Reviewed Journal)Kariyawasam, G.K., Richards, J.K., Wyatt, N.A., Running, K., Xu, S.S., Liu, Z., Borowicz, P., Faris, J.D., Friesen, T.L. 2021. The Parastagonospora nodorum necrotrophic effector SnTox5 targets the wheat gene Snn5 and facilitates entry into the leaf mesophyll. New Phytologist. https://doi.org/10.1111/nph.17602.Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation
                                                        

- (Pre-print Publication)Jordan, K., Bradbury, P., Miller, Z., Nyine, M., He, F., Guttieri, M.J., Brown Guedira, G.L., Buckler Iv, E.S., Jannink, J., Akhunov, E., Ward, B.P., Bai, G., Bowden, R.L., Fiedler, J.D., Faris, J.D. 2021. Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation. bioRxiv. https://doi.org/10.1101/2021.06.10.447944.Translational research to incorporate novel traits: Disease resistance

- (Book / Chapter)Characterization of synthetic wheat line Largo for resistance to stem rust
                                                        

- (Peer Reviewed Journal)Sharma, J.S., Overlander, M., Faris, J.D., Klindworth, D.L., Rouse, M.N., Kang, H., Long, Y., Jin, Y., Lagudah, E.S., Xu, S.S. 2021. Characterization of synthetic wheat line Largo for resistance to stem rust. Genes, Genomes, Genetics. https://doi.org/10.1093/g3journal/jkab193.Function and evolution of allelic variation of Sr13 conferring resistance to stem rust in tetraploid wheat (Triticum turgidum L.)
                                                        

- (Peer Reviewed Journal)Gill, B., Klindworth, D.L., Rouse, M.N., Zhang, J., Zhang, Q., Sharma, J.S., Chu, C.N., Long, Y., Chao, S., Olivera, P.D., Friesen, T.L., Zhong, S., Jin, Y., Faris, J.D., Fiedler, J.D., Elias, E.M., Liu, S., Cai, X., Xu, S.S. 2021. Function and evolution of allelic variation of Sr13 conferring resistance to stem rust in tetraploid wheat (Triticum turgidum L.). Plant Journal. 106:1674-1691. https://doi.org/10.1111/tpj.15263.Characterization of effectors and their targets in necrotrophic pathogens reveals trends and variation in host manipulation
                                                        

- (Review Article)Friesen, T.L., Faris, J.D. 2021. Characterization of effectors and their targets in necrotrophic pathogens reveals trends and variation in host manipulation. Annual Review of Phytopathology. https://doi.org/10.1146/annurev-phyto-120320-012807.A protein kinase-major sperm protein gene hijacked by a necrotrophic fungal pathogen triggers disease susceptibility in wheat
                                                        

- (Peer Reviewed Journal)Zhang, Z., Running, K.L., Sudeshi, S., Peters Haugrud, A.R., Szabo-Hever, A., Shi, G., Brueggeman, R.S., Xu, S.S., Friesen, T.L., Faris, J.D. 2021. A protein kinase-major sperm protein gene hijacked by a necrotrophic fungal pathogen triggers disease susceptibility in wheat. Plant Journal. 106(3):720-732. https://doi.org/10.1111/tpj.15194.A wheat cysteine-rich receptor-like kinase confers broad-spectrum resistance against Septoria tritici blotch
                                                        

- (Peer Reviewed Journal)Saintenac, C., Cambon, F., Aouini, L., Verstappen, E., Mahmod T. Ghaffary, S., Poucet, T., Marande, W., Berges, H., Xu, S.S., Jaouannet, M., Favory, B., Alassimone, J., Sanchez-Vallet, A., Faris, J.D., Kema, G., Robert, O. 2021. A wheat cysteine-rich receptor-like kinase confers broad-spectrum resistance against Septoria tritici blotch. Nature Communications. 12:433. https://doi.org/10.1038/s41467-020-20685-0.The Global Durum Wheat Panel: An international effort to identify and exchange beneficial alleles
                                                        

- (Peer Reviewed Journal)Mazzucotelli, E., Sciara, G., Mastrangelo, A., Desiderio, F., Xu, S.S., Faris, J.D., Hayden, M.J., Tricker, P.J., Ozkan, H., Echenique, V. 2020. The Global Durum Wheat Panel: An international effort to identify and exchange beneficial alleles. Frontiers in Plant Science. 11:569905. https://doi.org/10.3389/fpls.2020.569905.Pyrenophora tritici-repentis race 4 isolates cause disease on tetraploid wheat
                                                        

- (Peer Reviewed Journal)Guo, J., Shi, G., Kalil, A., Friskop, A., Elias, E., Xu, S.S., Faris, J.D., Liu, Z. 2020. Pyrenophora tritici-repentis race 4 isolates cause disease on tetraploid wheat. Phytopathology. 110:1781-1790. https://doi.org/10.1094/PHYTO-05-20-0179-R.Meta-QTL analysis of tan spot resistance in wheat
                                                        

- (Peer Reviewed Journal)Liu, Y., Salsman, E., Wang, R., Galagedara, N., Zhang, Q., Fiedler, J.D., Liu, Z., Xu, S.S., Faris, J.D., Li, X. 2020. Meta-QTL analysis of tan spot resistance in wheat. Theoretical and Applied Genetics. 133:2363-2375. https://doi.org/10.1007/s00122-020-03604-1.Plant genes hijacked by necrotrophic fungal pathogens
                                                        

- (Review Article)Faris, J.D., Friesen, T.L. 2020. Plant genes hijacked by necrotrophic fungal pathogens. Current Opinion in Plant Biology. 56:74-80. https://doi.org/10.1016/j.pbi.2020.04.003.Genome-wide association mapping of tan spot resistance in a worldwide collection of durum wheat
                                                        

- (Peer Reviewed Journal)Galagedara, N., Liu, Y., Fiedler, J.D., Shi, G., Chao, S., Xu, S.S., Faris, J.D., Li, X., Liu, Z. 2020. Genome-wide association mapping of tan spot resistance in a worldwide collection of durum wheat. Theoretical and Applied Genetics. 133:2227–2237. https://doi.org/10.1007/s00122-020-03593-1.Variation analysis of root system development in wheat seedlings using a root phenotyping system
                                                        

- (Peer Reviewed Journal)Adeleke, E., Millas, R., McNeal, W., Faris, J.D., Taheri, A. 2020. Variation analysis of root system development in wheat seedlings using a root phenotyping system. Agronomy. 10(2):206. https://doi.org/10.3390/agronomy10020206.Evidence of local adaptation and regional effector repertoires in Parastagonospora nodorum

- (Abstract Only)Richards, J.K., Stukenbrock, E.H., Liu, Z., Cowger, C., Faris, J.D., Friesen, T.L. 2020. Evidence of local adaptation and regional effector repertoires in Parastagonospora nodorum [abstract]. Plant and Animal Genome Conference. W502.Mapping and characterization of yield component traits in cultivated emmer and durum wheat

- (Abstract Only)Peters Haugrud, A.R., Green, A.J., Xu, S.S., Faris, J.D. 2020. Mapping and characterization of yield component traits in cultivated emmer and durum wheat [abstract]. Plant and Animal Genome Conference XXVIII. PO0925.Using forward and reverse genetics to clone the septoria nodorum blotch susceptibility gene Snn5 in wheat

- (Abstract Only)Running, K., Sharma, S., Xu, S.S., Friesen, T.L., Faris, J.D. 2020. Using forward and reverse genetics to clone the septoria nodorum blotch susceptibility gene Snn5 in wheat [abstract]. Plant and Animal Genome Conference XXVIII. PO0945.Development and Validation of Semi-Thermal Asymmetric Reverse PCR Markers for Ug99-effective Stem Rust Resistance Genes in Wheat

- (Abstract Only)Zhang, J., Long, Y., Gill, B.K., Sharma, J.S., Zhang, Q., Klindworth, D.L., Cai, X., Friesen, T.L., Faris, J.D., Xu, S.S. 2020. Development and Validation of Semi-Thermal Asymmetric Reverse PCR Markers for Ug99-effective Stem Rust Resistance Genes in Wheat [abstract]. Plant and Animal Genome Conference XXVII. PO0941.A novel class of homoeologous genes targeted by a fungal necrotrophic effector triggers disease susceptibility in wheat

- (Abstract Only)Zhang, Z., Running, K., Seneviratne, S., Peters Haugrud, A., Brueggeman, R., Szabo-Hever, A., Xu, S.S., Friesen, T.L., Faris, J.D. 2020. A novel class of homoeologous genes targeted by a fungal necrotrophic effector triggers disease susceptibility in wheat [abstract]. Plant and Animal Genome Conference XXVIII. W1106.Identification of a major dominant gene for race-nonspecific tan spot resistance in wild emmer wheat
                                                        

- (Peer Reviewed Journal)Faris, J.D., Overlander, M., Kariyawasam, G.K., Carter, A., Xu, S.S., Liu, Z. 2019. Identification of a major dominant gene for race-nonspecific tan spot resistance in wild emmer wheat. Theoretical and Applied Genetics. 133:829-841. https://doi.org/10.1007/s00122-019-03509-8.Molecular characterization of Hessian fly resistance genes in Aegilops tauschii

- (Abstract Only)Long, Y., Zhang, Q., Anderson, K.M., Yu, G., Arora, S., Steuernagel, B., Luo, M., Cai, X., Gu, Y.Q., Wuddineh, W., Faris, J.D., Chen, M., Xu, S.S., Wulff, B.H., Lagudah, E.S., Harris, M.O. 2020. Molecular characterization of Hessian fly resistance genes in Aegilops tauschii [abstract]. Plant and Animal Genome Conference XXVIII. W809.Comprehensive analysis of Q gene near isogenic lines reveals key molecular pathways for wheat domestication and improvement
                                                        

- (Peer Reviewed Journal)Zhang, Z., Li, A., Song, G., Geng, S., Gill, B.S., Faris, J.D., Mao, L. 2019. Comprehensive analysis of Q gene near isogenic lines reveals key molecular pathways for wheat domestication and improvement. Plant Journal. 102:299-310. https://doi.org/10.1111/tpj.14624.QTL mapping of resistance to tan spot induced by race 2 of Pyrenophora tritici-repentis in tetraploid wheat
                                                        

- (Peer Reviewed Journal)Liu, Y., Salsman, E., Fiedler, J.D., Hegstad, J.B., Liu, Z., Faris, J.D., Xu, S.S., Li, X. 2019. QTL mapping of resistance to tan spot induced by race 2 of Pyrenophora tritici-repentis in tetraploid wheat. Theoretical and Applied Genetics. 133:433-442. https://doi.org/10.1007/s00122-019-03474-2.Genome-wide association mapping identifies SnTox5 in Parastagonospora nodorum

- (Abstract Only)Mapping and characterization of two stem rust resistance genes derived from cultivated emmer wheat accession PI 193883
                                                        

- (Peer Reviewed Journal)Sharma, J.S., Zhang, Q., Rouse, M.N., Klindworth, D.L., Friesen, T.L., Long, Y., Olivera, P.D., Jin, Y., McClean, P.E., Xu, S.S., Faris, J.D. 2019. Mapping and characterization of two stem rust resistance genes derived from cultivated emmer wheat accession PI 193883. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-019-03417-x.Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States
                                                        

- (Peer Reviewed Journal)Richards, J.K., Stukenbrock, E.H., Carpenter, J., Liu, Z., Cowger, C., Faris, J.D., Friesen, T.L. 2019. Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States. PLoS Genetics. 15(10):e1008223. https://doi.org/10.1371/journal.pgen.1008223.Genome-wide association mapping identifies SnTox5 in Parastagonospora nodorum

- (Abstract Only)A necrotrophic effector from Parastagonospora nodorum triggers programmed cell death by targeting two distinct non-homoeologous wheat sensitivity genes

- (Abstract Only)Identification of a candidate gene for a QTL for spikelet number per spike on wheat chromosome arm 7AL by high-resolution genetic mapping
                                                        

- (Peer Reviewed Journal)Kuzay, S., Xu, Y., Zhang, J., Katz, A., Pearce, S., Su, Z., Fraser, M., Anderson, J.A., Brown Guedira, G.L., Dewitt, N., Peters Haugrud, A., Faris, J.D., Akhunov, E., Bai, G., Dubcovsky, J. 2019. Identification of a candidate gene for a QTL for spikelet number per spike on wheat chromosome arm 7AL by high-resolution genetic mapping. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-019-03382-5.Genome wide association in Parastagonospora nodorum identifies novel necrotrophic effectors with unique characteristics

- (Abstract Only)A tale of three wheat genes reveals the ability of a necrotrophic pathogen to bamboozle diverse host targets

- (Abstract Only)Faris, J.D., Zhang, Z., Friesen, T.L. 2019. A tale of three wheat genes reveals the ability of a necrotrophic pathogen to bamboozle diverse host targets [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Abstract No. 019196.Identification of QTL for Yield Components and Seed Morphology in three Durum × Cultivated Emmer Populations

- (Abstract Only)Peters Haugrud, A.R., Friesen, T.L., Faris, J.D. 2019. Identification of QTL for Yield Components and Seed Morphology in three Durum × Cultivated Emmer Populations [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P208.High-resolution mapping of the septoria nodorum blotch susceptibility gene Snn2 in wheat

- (Abstract Only)Seneviratne, S., Friesen, T.L., Faris, J.D. 2019. High-resolution mapping of the septoria nodorum blotch susceptibility gene Snn2 in wheat [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P183.Toward the molecular cloning of a septoria nodorum blotch susceptibility gene in durum wheat

- (Abstract Only)Running, K.L., Sharma, S., Xu, S.S., Friesen, T.L., Faris, J.D. 2019. Toward the molecular cloning of a septoria nodorum blotch susceptibility gene in durum wheat [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P179.Nested loop PCR (NL-PCR) for amplification of large DNA fragments with complex structures in wheat [Abstract]

- (Abstract Only)Long, Y., Sun, Q., Steuernagel, B., Cai, X., Faris, J.D., Harris, M.O., Wulff, B.B., Lagudah, E.S., Xu, S.S. 2019. Nested loop PCR (NL-PCR) for amplification of large DNA fragments with complex structures in wheat [Abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P048.Genetic Diversity and Selective Sweep Analysis of Tetraploid Wheat Populations with Different Levels of Domestication and Adaptation

- (Abstract Only)Fiedler, J.D., Liu, Y., Xu, S.S., Faris, J.D., Elias, E., Li, X. 2019. Genetic Diversity and Selective Sweep Analysis of Tetraploid Wheat Populations with Different Levels of Domestication and Adaptation [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P394.A single necrotrophic effector from Parastagonospora nodorum has two susceptibility targets in wheat

- (Abstract Only)Genetic analysis of threshability and other spike traits in the evolution of cultivated emmer to fully domesticated durum wheat
                                                        

- (Peer Reviewed Journal)Sharma, J.S., Running, K.L., Xu, S.S., Zhang, Q., Peters, A.R., Sharma, S., McClean, P.E., Faris, J.D. 2019. Genetic analysis of threshability and other spike traits in the evolution of cultivated emmer to fully domesticated durum wheat. Molecular Genetics and Genomics. 294(3):757-771. https://doi.org/10.1007/s00438-019-01544-0.Genetics of variable disease expression conferred by inverse gene-for-gene interactions in the wheat-Parastagonospora nodorum pathosystem
                                                        

- (Peer Reviewed Journal)Peters Haugrud, A.R., Zhang, Z., Richards, J.K., Friesen, T.L., Faris, J.D. 2019. Genetics of variable disease expression conferred by inverse gene-for-gene interactions in the wheat-Parastagonospora nodorum pathosystem. Plant Physiology. 180(1):420-434. https://doi.org/10.1104/pp.19.00149.Durum wheat genome highlights past domestication signatures and future improvement targets
                                                        

- (Peer Reviewed Journal)Maccaferri, M., Harris, N.S., Twardziok, S.O., Gundlach, H., Spannagl, M., Ormanbekova, D., Lux, T., Prade, V., Milner, S., Himmelbach, A., Chao, S., Faris, J.D., Xu, S.S. 2019. Durum wheat genome highlights past domestication signatures and future improvement targets. Nature Genetics. 51(5):885-895. https://doi.org/10.1038/s41588-019-0381-3.Genetic diversity and resistance to Fusarium head blight in synthetic hexaploid wheat derived from Aegilops tauschii and diverse Triticum turgidum subspecies
                                                        

- (Peer Reviewed Journal)Szabo-Hever, A., Zhang, Q., Friesen, T.L., Shaobin, Z., Elias, E.M., Cai, X., Jin, Y., Faris, J.D., Chao, S., Xu, S.S. 2018. Genetic diversity and resistance to Fusarium head blight in synthetic hexaploid wheat derived from Aegilops tauschii and diverse Triticum turgidum subspecies. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2018.01829.Fusarium graminearum KP4-like proteins possess root growth-inhibiting activity against wheat and potentially contribute to fungal virulence in seedling rot
                                                        

- (Peer Reviewed Journal)Lu, S., Faris, J.D. 2019. Fusarium graminearum KP4-like proteins possess root growth-inhibiting activity against wheat and potentially contribute to fungal virulence in seedling rot. Fungal Genetics and Biology. 123:1-13. https://doi.org/10.1016/j.fgb.2018.11.002.Molecular cloning and comparative analysis of a PR-1-RK hybrid gene from Triticum urartu, the A-genome progenitor of hexaploid wheat
                                                        

- (Peer Reviewed Journal)Lu, S., Faris, J.D., Edwards, M.C. 2018. Molecular cloning and comparative analysis of a PR-1-RK hybrid gene from Triticum urartu, the A-genome progenitor of hexaploid wheat. Plant Molecular Biology. https://doi.org/10.1007/s11105-018-1098-7.ToxA is present in the U.S. Bipolaris sorokiniana population and is a significant virulence factor on wheat harboring Tsn1
                                                        

- (Peer Reviewed Journal)Friesen, T.L., Holmes, D.J., Bowden, R.L., Faris, J.D. 2018. ToxA is present in the U.S. Bipolaris sorokiniana population and is a significant virulence factor on wheat harboring Tsn1. Plant Disease. 102(12):2446-2452. Plant Dis. 102:2446-2452.Identification, mapping, and marker development of stem rust resistance genes in durum wheat 'Lebsock'
                                                        

- (Peer Reviewed Journal)Saini, J., Faris, J.D., Zhang, Q., Rouse, M.N., Jin, Y., Long, Y., Klindworth, D.L., Elias, E.M., McClean, P.E., Edwards, M.C., Xu, S.S. 2018. Identification, mapping, and marker development of stem rust resistance genes in durum wheat 'Lebsock'. Molecular Breeding. 38:77. https://doi.org/10.1007/s11032-018-0833-y.Identification and validation of a new source of low grain cadmium accumulation in durum wheat
                                                        

- (Peer Reviewed Journal)Abbasabadi, A.O., Kumar, A., Pirseyedi, S., Salsman, E., Dobrydina, M., Poudel, R.S., Abuhammad, W.A., Chao, S., Faris, J.D., Elias, E.M. 2018. Identification and validation of a new source of low grain cadmium accumulation in durum wheat. G3, Genes/Genomes/Genetics. 8:923-932.Reference quality genome assemblies of three Parastagonospora nodorum isolates differing in virulence on wheat
                                                        

- (Peer Reviewed Journal)Richards, J.K., Wyatt, N.A., Liu, Z., Faris, J.D., Friesen, T.L. 2018. Reference quality genome assemblies of three Parastagonospora nodorum isolates differing in virulence on wheat. G3, Genes/Genomes/Genetics. 8:393-399. https://doi.org/10.1534/g3.117.300462.STARP: A user-friendly and broadly applicable technique for SNP genotyping in wheat and other crops

- (Abstract Only)Long, Y., Qi, L., Cai, X., Faris, J.D., Xu, S.S. 2018. STARP: A user-friendly and broadly applicable technique for SNP genotyping in wheat and other crops. Plant and Animal Genome Conference. Available:  https://plan.core-apps.com/pag_2018/abstract/fff6e3855de940b33de03bc4efb58e64Identification and molecular mapping of quantitative trait loci for resistance to Fusarium head blight in cultivated emmer PI 272527

- (Abstract Only)Zhang, Q., Faris, J.D., Chao, S., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2017. Identification and molecular mapping of quantitative trait loci for resistance to Fusarium head blight in cultivated emmer PI 272527 [abstract]. In: Proceedings of the 2017 National Fusarium Head Blight Forum. December 3-5, 2017, Milwaukee, Wisconsin. p. 97.A major tan spot race-nonspecific resistance gene in tetraploid and hexaploid wheat

- (Abstract Only)Faris, J.D., Overlander, M., Kariyawasam, G.K., Carter, A.H., Liu, Z. 2018. A major tan spot race-nonspecific resistance gene in tetraploid and hexaploid wheat [abstract]. Plant and Animal Genome Conference XXVI. January 13-17, 2018, San Diego, CA. P1080.Differential expression of the necrotrophic effector gene SnTox1 in the pathogen Parastagonospora nodorum

- (Abstract Only)Peters, A.R., Friesen, T.L., Faris, J.D. 2018. Differential expression of the necrotrophic effector gene SnTox1 in the pathogen Parastagonospora nodorum. Plant and Animal Genome Conference XXVI. January 13-17, 2018, San Diego, CA. P1081.Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis

- (Peer Reviewed Journal)Ameen, G., Kariyawasam, G., Shi, G., Friesen, T.L., Faris, J.D., Ali, S., Rasmussen, J.B., Liu, Z. 2017. Molecular manipulation of the mating-type system and development of a new approach for characterizing pathogen virulence in Pyrenophora tritici-repentis. Fungal Genetics and Biology. 109:16-25. https://doi.org/10.1016/j.fgb.2017.10.004.Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates

- (Peer Reviewed Journal)Nirmala, J., Saini, J., Newcomb, M., Olivera, P., Gale, S.W., Klindworth, D.L., Elias, E., Talbert, L., Chao, S., Faris, J.D., Xu, S.S., Jin, Y., Rouse, M.N. 2017. Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates. G3, Genes/Genomes/Genetics. 7:3481-3490.Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates

- (Peer Reviewed Journal)Nirmala, J., Saini, J., Newcomb, M., Olivera, P., Gale, S.W., Klindworth, D.L., Elias, E., Talbert, L., Chao, S., Faris, J.D., Xu, S.S., Jin, Y., Rouse, M.N. 2017. Discovery of a novel stem rust resistance allele in durum wheat that exhibits differential reactions to Ug99 isolates. G3, Genes/Genomes/Genetics. https://doi.org/10.1534/g3.117.300209.Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25 x FGOH04Ptt021
                                                        

- (Peer Reviewed Journal)Koladia, V.M., Richards, J.K., Wyatt, N.A., Faris, J.D., Brueggeman, R.S., Friesen, T.L. 2017. Genetic analysis of virulence in the Pyrenophora teres f. teres population BB25 x FGOH04Ptt021. Fungal Genetics and Biology. 107:12-19. https://doi.org/10.1016/j.fgb.2017.07.003.Wild emmer genome architecture and diversity elucidate wheat evolution and domestication
                                                        

- (Peer Reviewed Journal)Avni, R., Nave, M., Barad, O., Baruch, K., Twardziok, S.O., Gundlach, H., Hale, I., Mascher, M., Spannagl, M., Wiebe, K., Jordan, K.W., Golan, G., Deek, J., Ben-Zvi, B., Ben-Zvi, G., Himmelbach, A., MacLachlan, R.P., Sharpe, A.G., Fritz, A., Ben-David, R., Budak, H., Fahima, T., Korol, A., Faris, J.D., Hernandez, A., Mikel, M.A., Levy, A.A., Steffenson, B., Maccaferri, M., Tuberosa, R., Cattivelli, L., Faccioli, P., Ceriotti, A., Kashkush, K., Pourkheirandish, M., Komatsuda, T., Eilam, T., Sela, H., Sharon, A., Ohad, N., Chamovitz, D.A., Mayer, K.F.X., Stein, N., Ronen, G., Peleg, Z., Pozniak, C.J., Akhunov, E.D., Distelfeld, A. 2017. Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science. 357:93-97.Characterizing the Pyrenophora teres f. maculata – barley interaction using pathogen genetics
                                                        

- (Peer Reviewed Journal)Carlsen, S.A., Neupane, A., Wyatt, N.A., Richards, J.K., Faris, J.D., Xu, S.S., Brueggeman, R.S., Friesen, T.L. 2017. Characterizing the Pyrenophora teres f. maculata – barley interaction using pathogen genetics. G3: Genes, Genomes, Genetics. 7(8):2615-2626. 10.1534/g3.117.043265.MicroRNA172 plays a critical role in wheat spike morphogenesis and grain threshability
                                                        

- (Peer Reviewed Journal)Debernardi, J.M., Lin, H., Chuck, G., Faris, J.D., Dubcovsky, J. 2017. MicroRNA172 plays a critical role in wheat spike morphogenesis and grain threshability. Development. 144:1966-1975.Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat
                                                        

- (Peer Reviewed Journal)Liu, Z., Zurn, J.D., Kariyawasam, G., Faris, J.D., Shi, G., Hansen, J., Rasmussen, J.B., Acevedo, M. 2017. Inverse gene-for-gene interactions contribute additively to tan spot susceptibility in wheat. Theoretical and Applied Genetics. 130:1267-1276. doi: 10.1007/s00122-017-2886-4.Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat
                                                        

- (Peer Reviewed Journal)Klindworth, D.L., Saini, J., Long, Y., Rouse, M.N., Faris, J.D., Jin, Y., Xu, S.S. 2017. Physical mapping of DNA markers linked to stem rust resistance gene Sr47 in durum wheat. Theoretical and Applied Genetics. 130:1135-1154. doi: 10.1007/s00122-017-2875-7.Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase
                                                        

- (Peer Reviewed Journal)Lu, S., Faris, J.D., Edwards, M.C. 2017. Molecular cloning and characterization of two novel genes from hexaploid wheat that encode double PR-1 domains coupled with a receptor-like protein kinase. Molecular Genetics and Genomics. 292:435-452. doi:10.1007/s00438-017-1287-3.Toward the molecular cloning of the Septoria nodorum blotch susceptibility gene Snn2 in wheat

- (Abstract Only)Seneviratne, S., Friesen, T.L., Faris, J.D. 2017. Toward the molecular cloning of the Septoria nodorum blotch susceptibility gene Snn2 in wheat [abstract]. Plant & Animal Genome Conference, January 14-18, 2017, San Diego, CA.Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem

- (Abstract Only)Peters, A.R., Friesen, T.L., Faris, J.D. 2017. Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem [abstract]. Plant and Animal Genome Conference, January 14-18, 2017, San Diego, CA.Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat
                                                        

- (Peer Reviewed Journal)Qureshi, N., Bariana, H., Forrest, K., Hayden, M., Keller, B., Wicker, T., Faris, J.D., Salina, E., Bansal, U. 2017. Fine mapping of the chromosome 5B region carrying closely linked rust resistance genes Yr47 and Lr52 in wheat. Theoretical and Applied Genetics. 130:495-504.New insights into the roles of host gene-necrotrophic effector interactions in governing susceptibility of durum wheat to tan spot and Septoria nodorum blotch

- (Peer Reviewed Journal)Virdi, S.K., Liu, Z., Overlander, M., Zhang, Z., Xu, S.S., Friesen, T.L., Faris, J.D. 2016. New insights into the roles of host gene-necrotrophic effector interactions in governing susceptibility of durum wheat to tan spot and Septoria nodorum blotch. Genes, Genomes, Genetics. 6:4139-4150. doi: 10.1534/g3.116.036525.The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease
                                                        

- (Peer Reviewed Journal)Shi, G., Zhang, Z., Friesen, T.L., Raats, D., Fahima, T., Brueggeman, R.S., Lu, S., Trick, H.N., Liu, Z., Chao, W., Frenkel, Z., Xu, S.S., Rasmussen, J.B., Faris, J.D. 2016. The hijacking of a receptor kinase-driven pathway by a wheat fungal pathogen leads to disease. Science Advances. 2:e1600822.Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates
                                                        

- (Peer Reviewed Journal)Koladia, V.M., Faris, J.D., Richards, J.K., Brueggeman, R.S., Chao, S., Friesen, T.L. 2016. Genetic analysis of net form net blotch resistance in barley lines CIho 5791 and Tifang against a global collection of P.teres f. teres isolates. Theoretical and Applied Genetics. 130:163-173. doi: 10.1007/s00122-016-2801-4.Unraveling the genetics of wheat-necrotrophic pathogen interactions reveals a conundrum

- (Abstract Only)Faris, J.D., Friesen, T.L., Liu, Z., Xu, S.S. 2016. Unraveling the genetics of wheat-necrotrophic pathogen interactions reveals a conundrum [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem

- (Abstract Only)Peters, A.R., Friesen, T.L., Faris, J.D. 2016. Quantification of disease expression conferred by three host gene-necrotrophic effector interactions in the wheat-Parastagonospora nodorum pathosystem [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.Genomic analysis and tools for the Septoria nodorum blotch susceptibility gene Snn2 in wheat

- (Abstract Only)Seneviratne, S., Friesen, T.L., Faris, J.D. 2016. Genomic analysis and tools for the Septoria nodorum blotch susceptibility gene Snn2 in wheat [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum

- (Abstract Only)Saini, J., Xu, S.S., Rouse, M.N., Chao, S., Long, Y., Mcclean, P., Faris, J.D. 2016. Genomic analysis of a novel gene conferring resistance to Ug99 stem rust in Triticum turgidum ssp. dicoccum [abstract]. Durable Wheat Resistance Meeting, November 2-3, 2016, Minneapolis, MN.Validation of genome-wide association studies as a tool to identify virulence factors in Parastagonospora nodorum
                                                        

- (Peer Reviewed Journal)Gao, Y., Liu, Z., Faris, J.D., Richards, J., Brueggeman, R.S., Li, X., Oliver, R.P., McDonald, B.A., Friesen, T.L. 2016. Validation of genome-wide association studies as a tool to identify virulence factors in Parastagonospora nodorum. Phytopathology. 106(10):1177-1185.SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual function protein that facilitates infection while protecting from wheat-produced chitinases
                                                        

- (Peer Reviewed Journal)Liu, Z., Gao, Y., Kim, Y.M., Faris, J.D., Shelver, W.L., de Wit, P.J.G.M., Xu, S.S., Friesen, T.L. 2016. SnTox1, a Parastagonospora nodorum necrotrophic effector, is a dual-function protein that facilitates infection while protecting from wheat-produced chitinases. New Phytologist. 211:1052-1064. doi: 10.1111/nph.13959.Genetic relationships between race-nonspecific and race-specific interactions in the wheat-Pyrenophora tritici-repentis pathosystem
                                                        

- (Peer Reviewed Journal)Kariyawasam, G.K., Carter, A.H., Rasmussen, J.B., Faris, J., Xu, S.S., Mergoum, M., Liu, Z. 2016. Genetic relationships between race-nonspecific and race-specific interactions in the wheat-Pyrenophora tritici-repentis pathosystem. Theoretical and Applied Genetics. 129:897-908. doi: 10.1007/s00122-016-2670-x.Genome mapping

- (Book / Chapter)Tiwari, V.K., Faris, J.D., Friebe, B., Gill, B.S. 2016. Genome mapping. In: Wrigley, C., Walker, C.E., Corke, H., editors. Encyclopedia of Grain Science. Waltham, MA: Academic Press. pp. 365-375.Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat
                                                        

- (Peer Reviewed Journal)Chao, S., Elias, E., Benscher, D., Ishikawa, G., Huang, Y.-F., Saito, M., Nakamura, T., Xu, S., Faris, J., Sorrells, M. 2016. Genetic mapping of major-effect seed dormancy quantitative trait loci on chromosome 2B using recombinant substitution lines in tetraploid wheat. Crop Science. 56:59-72.Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat
                                                        

- (Peer Reviewed Journal)Yu, G., Klindworth, D.L., Friesen, T.L., Faris, J.D., Zhong, S., Rasmussen, J.B., Xu, S.S. 2015. Development of a diagnostic co-dominant marker for stem rust resistance gene Sr47 introgressed from Aegilops speltoides into durum wheat. Theoretical and Applied Genetics. 128:2367-2374.Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat
                                                        

- (Peer Reviewed Journal)Shi, G., Zhang, Z., Friesen, T.L., Bansal, U., Cloutier, S., Wicker, T., Rasmussen, J.B., Faris, J.D. 2016. Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat. Molecular Genetics and Genomics. 291:107-119.The wheat Snn7 gene confers susceptibility upon recognition of the Parastagonospora nodorum necrotrophic effector SnTox7
                                                        

- (Peer Reviewed Journal)Shi, G., Friesen, T.L., Jyoti Saini, Xu, S.S., Rasmussen, J.B., Faris, J.D. 2015. The wheat Snn7 gene confers susceptibility on recognition of the Parastagonospora nodorum necrotrophic effector SnTox7. The Plant Genome. 8. doi: 10.3835/plantgenome2015.02.0007.Development of genetic and genomic resources for target breeding in durum wheat

- (Abstract Only)Xu, S.S., Chao, S., Faris, J.D., Friesen, T.L., Liu, Z., Jin, Y., Rouse, M.N., Elias, E.M. 2015. Development of genetic and genomic resources for target breeding in durum wheat [abstract]. From Seed to Pasta & Beyond: A Sustainable Durum Wheat Chain for Food Security and Healthy Lives, May 31-June 3, 2015, Bologna Italy.Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem
                                                        

- (Peer Reviewed Journal)Gao, Y., Faris, J.D., Liu, Z., Kim, Y.M., Syme, R.A., Oliver, R.P., Xu, S.S., Friesen, T.L. 2015. Identification and characterization of the SnTox6-Snn6 interaction in the Parastagonospora nodorum-wheat pathosystem. Molecular Plant-Microbe Interactions. 28(5):615-625.Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat

- (Abstract Only)Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat [abstract]. In: Canty, S., Clark, A., Turcott, N., Van Sanford, D., editors. Proceedings of the National Fusarium Head Blight Forum, East Lansing, MI/Lexington, KY: U.S. Wheat & Barley Scab Initiative, December 7-9, 2014, St. Louis, MO. p. 102.Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat

- (Abstract Only)Sun, Q., Chao, S., Friesen, T.L., Faris, J.D., Xu, S.S. 2015. Genome-wide association mapping of susceptibility to Stagonospora nodorum blotch in emmer wheat. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper16321.html.Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat

- (Abstract Only)Xu, S.S., Friesen, T.L., Chao, S., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2015. Targeted introgression of stem rust Ug99 resistance from wheatgrasses into pasta and bread wheat [abstract]. Plant & Animal Genome XXIII, January 10-14, 2015, San Diego, CA. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper14596.html.Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map
                                                        

- (Peer Reviewed Journal)Zhang, Q., Axtman, J.E., Faris, J.D., Chao, S., Zhang, Z., Friesen, T.L., Zhong, S., Cai, X., Elias, E.M., Xu, S.S. 2014. Identification and molecular mapping of quantitative trait loci for Fusarium head blight resistance in emmer and durum wheat using a single nucleotide polymorphism-based linkage map. Molecular Breeding. 34:1677-1687.A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding
                                                        

- (Peer Reviewed Journal)Maccaferri, M., Ricci, A., Salvi, S., Milner, S.G., Noli, E., Martelli, P.L., Casadio, R., Akhunov, E., Scalabrin, S., Vendramin, V., Ammar, K., Blanco, A., Desiderio, F., Distelfeld, A., Dubcovsky, J., Fahima, T., Faris, J.D., Korol, A., Massi, A., Mastrangelo, A.M., Morgante, M., Pozniak, C., N'Diaye, A., Xu, S., Tuberosa, R. 2015. A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding. Plant Biotechnology Journal. 13:648-663.Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map
                                                        

- (Peer Reviewed Journal)Faris, J.D., Zhang, Q., Chao, S., Zhang, Z., Xu, S.S. 2014. Analysis of agronomic and domestication traits in a durum x cultivated emmer wheat population using a high-density single nucleotide polymorphism-based linkage map. Theoretical and Applied Genetics. 127:2333-2348.Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H

- (Peer Reviewed Journal)Shjerve, R.A., Faris, J.D., Brueggeman, R.S., Yan, C., Zhu, Y., Koladia, V., Friesen, T.L. 2014. Evaluation of a Pyrenophora teres f. teres mapping population reveals multiple independent interactions with a region of barley chromosome 6H. Fungal Genetics and Biology. 70:104-112.Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H
                                                        

- (Peer Reviewed Journal)Liu, Z., Holmes, D.J., Faris, J.D., Chao, S., Brueggeman, R., Edwards, M.C., Friesen, T.L. 2015. Necrotrophic effector-triggered susceptibility (NETS) underlies the barley-Pyrenophora teres f. teres interaction specific to chromosome 6H. Molecular Plant Pathology. 16(2):188-200.Rewiring the wheat reproductive system to harness heterosis for the next wave of yield improvements
                                                        

- (Other)Gornicki, P., Faris, J.D. 2014. Rewiring the wheat reproductive system to harness heterosis for the next wave of yield improvements. Proceedings of the National Academy of Sciences. 111:9024-9025.Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication
                                                        

- (Peer Reviewed Journal)Faris, J.D., Zhang, Z., Chao, S. 2014. Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication. Gene. 542:198-208.Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat
                                                        

- (Peer Reviewed Journal)Faris, J.D., Zhang, Z., Garvin, D.F., Xu, S.S. 2014. Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat. Molecular Genetics and Genomics. 289:641-651.A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat

- (Peer Reviewed Journal)Lu, S., Faris, J.D., Sherwood, R., Friesen, T.L., Edwards, M.C. 2014. A dimeric PR-1-type pathogenesis-related protein interacts with ToxA and potentially mediates ToxA-induced necrosis in sensitive wheat. Molecular Plant Pathology. 15(7):650-663.New germplasm development using synthetic and other approaches to transfer stem rust resistance from tetraploids to hexaploids

- (Abstract Only)Xu, S.S., Zhang, Q.J., Klindworth, D.L., Jin, Y., Rouse, M.N., Friesen, T.L., Cai, X., Faris, J.D. 2014. New germplasm development using synthetic and other approaches to transfer stem rust resistance from tetraploids to hexaploids [abstract]. Borlaug Global Rust Initiative Technical Workshop, March 22-25, 2014, Ciudad Obregon, Mexico.Wheat domestication: Key to agricultural revolutions past and future

- (Book / Chapter)Faris, J.D. 2014. Wheat domestication: Key to agricultural revolutions past and future. In: Tuberosa, R., Graner, A., Frison, E., editors. Genomics of Plant Genetic Resources. Volume 1. Managing, Sequencing and Mining Genetic Resources. Springer. p. 439-464.Chromosome engineering for alien gene introgression in wheat: Progress and prospective

- (Abstract Only)Xu, S.S., Niu, Z., Klindworth, D.L., Zhang, Q.J., Chao, S., Friesen, T.L., Jin, Y., Rouse, M.N., Faris, J.D., Cai, X. 2013. Chromosome engineering for alien gene introgression in wheat: Progress and prospective. Triticeae Cytogenetics: Past, Present and Future, September 15-16, 2013, Kyoto, Japan. p. 24-25.Genetics of tan spot resistance in wheat
                                                        

- (Review Article)Faris, J.D., Liu, Z.H., Xu, S.S. 2013. Genetics of tan spot resistance in wheat. Theoretical and Applied Genetics. 126:2197-2217.Synthetic hexaploids derived from under-exploited tetraploids as a new resource for disease resistance in wheat

- (Abstract Only)Xu, S.S., Zhang, Q.J., Jin, Y., Rouse, M.N., Liu, Z.H., Friesen, T.L., Pumphrey, M.O., Cai, X., Faris, J.D. 2013. Synthetic hexaploids derived from under-exploited tetraploids as a new resource for disease resistance in wheat. 12th International Wheat Genetics Symposium, September 8-14, 2013, Yokohama, Japan. p. 107.Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat
                                                        

- (Peer Reviewed Journal)Akhunov, E.D., Sehgal, S., Liang, H., Wang, S., Akhunova, A.R., Kaur, G., Li, W., Forrest, K.L., See, D., Simkova, H., Ma, Y., Hayden, M.J., Luo, M., Faris, J.D., Dolezel, J., Gill, B.S. 2013. Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat. Plant Physiology. 161:252-265.Investigation of the role of the necrotrophic effector SnTox1 in virulence in the Stagonospora nodorum-wheat interaction

- (Abstract Only)Friesen, T.L., Liu, Z.H., Lu, S., Solomon, P.S., Oliver, R.P., Faris, J.D. 2013. Investigation of the role of the necrotrophic effector SnTox1 in virulence in the Stagonospora nodorum-wheat interaction. Plant and Animal Genome Conference, January 12-16, 2013, San Diego, CA.Dimerization and protease resistance: new insight into the function of PR-1

- (Peer Reviewed Journal)Lu, S., Faris, J.D., Sherwood, R., Edwards, M.C. 2013. Dimerization and protease resistance: new insight into the function of PR-1. Journal of Plant Physiology. 170:105-110.SnTox5-Snn5: A novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions

- (Peer Reviewed Journal)Friesen, T.L., Chu, C., Xu, S.S., Faris, J.D. 2012. SnTox5-Snn5: A novel Stagonospora nodorum effector-wheat gene interaction and its relationship with the SnToxA-Tsn1 and SnTox3-Snn3-B1 interactions. Molecular Plant Pathology. 13(9):1101-1109.Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins

- (Abstract Only)Dunnell, K.L., Faris, J.D., Friesen, T.L., Edwards, M.C., Lu, S. 2012. Heterologous expression and functional analysis of the wheat group 1 pathogenesis-related (PR-1) proteins. Meeting Abstract. 102:S4.33.Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici )-wheat interactions

- (Abstract Only)Lu, S., Friesen, T.L., Faris, J.D. 2012. Differential expression of the pathogenesis-related protein 1 (PR-1) gene family in stem rust (Puccinia graminis f. sp. tritici)-wheat interactions. American Phytopathological Society, August 4-8, 2012, Providence, RI. Available: http://www.apsnet.org/meetings/Documents/2012_Meeting_Abstracts/aps12abP582.htmGenetic mapping analysis of bread-making quality traits in spring wheat

- (Peer Reviewed Journal)Simons, K., Anderson, J.A., Mergoum, M., Faris, J.D., Klindworth, D.L., Xu, S.S., Sneller, C., Ohm, J.-B., Hareland, G.A., Edwards, M.C., Chao, S. 2012. Genetic mapping analysis of bread-making quality traits in spring wheat. Crop Science. 52:2182-2197.Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa

- (Peer Reviewed Journal)Faris, J.D., Abeysekara, N.S., McClean, P.E., Xu, S.S., Friesen, T.L. 2012. Tan spot susceptibility governed by the Tsn1 locus and race-nonspecific resistance quantitative trait loci in a population derived from the wheat lines Salamouni and Katepwa. Molecular Breeding. 30:1669-1678.Stagonospora nodorum: From pathology to genomics and host resistance

- (Review Article)Oliver, R.P., Friesen, T.L., Faris, J.D., Solomon, P.S. 2012. Stagonospora nodorum: From pathology to genomics and host resistance. Annual Review of Phytopathology. 50:23-43.Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat

- (Peer Reviewed Journal)Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat. Genes|Genomes|Genetics. 2:665-673.Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat

- (Abstract Only)Xu, S.S., Niu, Z., Klindworth, D.L., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Harris, M.O. 2012. Integration of DNA markers with chromosome engineering for efficient introgression of resistance genes from wild grasses into wheat. Meeting Abstract. pg 15.Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis

- (Peer Reviewed Journal)Tan, K.C., Ferguson-Hunt, M., Rybak, K., Waters, O.D.C., Stanley, W.A., Bond, C.S., Stukenbrock, E.H., Friesen, T.L., Faris, J.D., McDonald, B.A., Oliver, R.P. 2012. Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis. Molecular Plant-Microbe Interactions. 25:515-522.The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1

- (Peer Reviewed Journal)Liu, Z., Zhang, Z., Faris, J.D., Oliver, R.P., Syme, R., Mcdonald, M.C., Mcdonald, B.A., Solomon, P.S., Lu, S., Shelver, W.L., Xu, S.S., Friesen, T.L. 2012. The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1. PLoS Pathogens. 8(1):e1002467.Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

- (Peer Reviewed Journal)Zhang, Z., Belcram, H., Gornicki, P., Charles, M., Just, J., Huneau, C., Magdelenat, G., Couloux, A., Samain, S., Gill, B.S., Rasmussen, J.B., Barbe, V., Faris, J.D., Chalhoub, B. 2011. Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat. Proceedings of the National Academy of Sciences. 108:18737-18742.Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat

- (Peer Reviewed Journal)Faris, J.D., Zhang, Z., Rasmussen, J.B., Friesen, T.L. 2011. Variable expression of the Stagonospora nodorum effector SnToxA among isolates is correlated with levels of disease susceptibility in wheat. Molecular Plant-Microbe Interactions. 24:1419-1426.Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat

- (Peer Reviewed Journal)Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat

- (Peer Reviewed Journal)Abeysekara, N., Faris, J.D., Chao, S., Mcclean, P., Friesen, T.L. 2012. Whole genome QTL analysis of Stagonospora nodorum blotch resistance and validation of the SnTox4-Snn4 interaction in hexaploid wheat. Phytopathology. 102:94-104.Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.)

- (Peer Reviewed Journal)Lu, S., Friesen, T.L., Faris, J.D. 2011. Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.). Molecular Genetics and Genomics. 285:485-503.New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat

- (Peer Reviewed Journal)Ghaffary, S.T., Faris, J.D., Friesen, T.L., Visser, R.G., Van Der Lee, T.A., Robert, O., Kema, G.H. 2011. New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat. Journal of Theoretical and Applied Genetics. 124:125-142.Characterization of plant – fungal interactions involving necrotrophic effector-producing plant pathogens

- (Book / Chapter)Friesen, T.L., Faris, J.D. 2012. Characterization of plant – fungal interactions involving necrotrophic effector-producing plant pathogens. In: Bolton, M.D., Thomma, B.P.H.J. editors. Plant Fungal Pathogens: Methods and Protocols. New York, NY: Humana Press. p. 191-207.Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background

- (Abstract Only)Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Faris, J.D., Jin, Y., Cai, X., Xu, S.S. 2011. Chromosome engineering of wheat stem rust resistance gene Sr47 in a tetraploid wheat background. Meeting Abstract. pg. 182.Fighting against FHB – an excellent novel resistance source for future wheat breeding

- (Abstract Only)Chu, C., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Faris, J.D., Xu, S.S. 2010. Fighting against FHB – an excellent novel resistance source for future wheat breeding. Meeting Abstract. pg. 14.Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat

- (Peer Reviewed Journal)Abeysekara, N.S., Friesen, T.L., Liu, Z., Mcclean, P.E., Faris, J.D. 2010. Marker Development and Saturation Mapping of the Tan Spot Ptr ToxB Sensitivity locus Tsc2 in Hexaploid Wheat. The Plant Genome. 3:179-189.Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum

- (Peer Reviewed Journal)Zhang, Z., Friesen, T.L., Xu, S.S., Shi, G., Liu, Z., Rasmussen, J., Faris, J.D. 2011. Two Putatively Homoeologous Wheat Genes Mediate Recognition of SnTox3 to Confer Effector-triggered Susceptibility to Stagonospora nodorum. Plant Journal. 65:27-38.A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens

- (Peer Reviewed Journal)Faris, J.D., Zhang, Z., Lu, H., Lu, S., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Oliver, R.P., Simons, K.J., Friesen, T.L. 2010. A Unique Wheat Disease Resistance-like Gene Governs Effector-Induced Susceptibility to Necrotrophic pathogens. Proceedings of the National Academy of Sciences. 107:13544-13549.Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum)

- (Peer Reviewed Journal)Wiebe, K., Pozniak, C.J., Harris, N., Faris, J.D., Clarke, J.M., Knox, R.E., Taylor, G. 2010. Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum). Theoretical and Applied Genetics. 121:1047-1058.Variation in Kernel Characteristics and Protein Molecular Weight Distribution of Langdon Durum–Wild Emmer Wheat Chromosome Substitution Lines

- (Peer Reviewed Journal)Ohm, J., Klindworth, D.L., Hareland, G.A., Faris, J.D., Elias, M., Xu, S.S. 2010. Variation in Kernel Characteristics and Protein Molecular Weight Distribution of Langdon Durum–Wild Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science. 52:207-214.Development of Expressed Sequence Tag (EST)–based Markers for Genomic Analysis of a Barley 6H Region Harboring Multiple Net Form Net Blotch Resistance Genes

- (Peer Reviewed Journal)Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2010. Development of Expressed Sequence Tag (EST)–based Markers for Genomic Analysis of a Barley 6H Region Harboring Multiple Net Form Net Blotch Resistance Genes. The Plant Genome. 3:41-52Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat

- (Abstract Only)Lu, S., Friesen, T.L., Faris, J.D. 2010. Dissection of effector-induced host susceptibility pathways in Stagonospora nodorum blotch of wheat.Phytopathology 100:S151Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations

- (Peer Reviewed Journal)Gu, X., Zhang, L., Glover, K., Chu, C., Xu, S.S., Faris, J.D., Friesen, T.L., Ibrahim, A. 2010. Genetic Variation of Seed Dormancy in Synthetic Hexaploid Wheat-Derived Populations. Crop Science. 50:1318-1324.Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines

- (Peer Reviewed Journal)Xu, S.S., Chu, C.G., Chao, S., Klindworth, D.L., Faris, J.D., Elias, E.M. 2010. Marker-assisted Characterization of Durum Wheat Langdon-Golden Ball Disomic Substitution Lines. Theoretical and Applied Genetics.120:1575-1585Genetic Analysis of Disease Susceptibility Caused by Compatible Tsn1-SnToxA and Snn1-SnTox1 Interactions in the Wheat-Stagonospora Nodorum Pathosystem

- (Peer Reviewed Journal)Chu, C.G., Faris, J.D., Xu, S.S., Friesen, T.L. 2010. Genetic Analysis of Disease Susceptibility Caused by Compatible Tsn1-SnToxA and Snn1-SnTox1 Interactions in the Wheat-Stagonospora Nodorum Pathosystem. Theoretical and Applied Genetics. 120:1451-1459Characterization Of The Wheat-Stagonospora nodorum Disease System - What Is The Molecular Basis of This Quantitative Necrotrophic Disease Interaction

- (Proceedings)Friesen, T.L., Faris, J.D. 2010. Characterization Of The Wheat-Stagonospora nodorum Disease System - What Is The Molecular Basis of This Quantitative Necrotrophic Disease Interaction. Canadian Journal of Plant Pathology 32:20-28Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.)

- (Peer Reviewed Journal)Chao, S., Xu, S.S., Elias, E., Faris, J.D., Sorrells, M. 2010. Identification of Chromosome Locations of Genes Affecting pre-Harvest Sprouting and Seed Dormancy using Chromosome Substitution Lines in Tetraploid Wheat (Triticum turgidum L.). Crop Science. 50:1180-1187Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem

- (Abstract Only)Faris, J.D., Zhang, Z., Lu, S., Lu, H., Reddy, L., Cloutier, S., Fellers, J.P., Meinhardt, S.W., Rasmussen, J.B., Xu, S.S., Simons, K.J., Friesen, T.L. 2010. Pathogen Exploitation of Gene-for-Gene Resistance Mechanisms in the Wheat-Stagonospora nodorum Pathosystem. Meeting Abstract. pg.136Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB)

- (Abstract Only)Zhang, Z., Friesen, T.L., Shi, G., Rasmussen, J.B., Faris, J.D. 2010. Two Homoeologous Wheat Genes Confer Sensitivity to a Single Host-Selective Toxin and Susceptibility to Stagonospora nodorum blotch (SNB). Meeting Abstract. pg 188Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem

- (Peer Reviewed Journal)Abeysekara, N., Friesen, T.L., Keller, B., Faris, J.D. 2009. Identification and Characterization of a Novel Host-Toxin Interaction in the Wheat - Stagonospora Nodorum Pathosystem. Theoretical and Applied Genetics. 120:117-126Identification of Novel Tan Spot Resistance QTLs Using an SSR-Based Linkage Map of Tetraploid Wheat

- (Peer Reviewed Journal)Chu, C., Chao, S., Friesen, T.L., Faris, J.D., Zhong, S., Xu, S.S. 2009.Novel Tan Spot Resistance QTLs Detected Using an SSR-Based Linkage Map of Tetraploid Wheat. Molecular Breeding. 25:327-338.SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene

- (Peer Reviewed Journal)Liu, Z., Faris, J.D., Oliver, R.P., Tan, K., Solomon, P.S., Mcdonald, M.C., Mcdonald, B.A., Nunez, A., Lu, S., Rasmussen, J.B., Friesen, T.L. 2009. SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene. PLoS Pathogens. 5:(9) 1-15Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions

- (Abstract Only)Lu, S., Friesen, T.L., Faris, J.D. 2009. Identification of ToxA-Interacting Proteins Suggests a Possible Role for Pathogenesis-Related Protein 1(PR-1) in Mediating Stagonospora Nodorum-wheat Interactions. Meeting Abstract. p. 97.Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility

- (Peer Reviewed Journal)Faris, J.D., Friesen, T.L. 2009. Re-Evaluation of a Tetraploid Wheat Population Indicates That the Tsn1-ToxA Interaction is the Only Factor Governing Stagonospora Nodorum Blotch Susceptibility. Phytopathology. 99:(8) 906-912Identification of Novel QTL for Seeding and Adult Plant Leaf Rust Resistance in a Wheat Doubled Haploid Population

- (Peer Reviewed Journal)Chu, C.G., Friesen, T.L., Xu, S.S., Faris, J.D., Kolmer, J.A. 2009. Identification of Novel QTL for Seeding and Adult Plant Leaf Rust Resistance in a Wheat Doubled Haploid Population. Theoretical and Applied Genetics. 119:263-269Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines

- (Peer Reviewed Journal)Klindworth, D.L., Hareland, G.A., Elias, E.M., Faris, J.D., Chao, S., Xu, S.S. 2009. Agronomic and Quality Characteristics of Two New Sets of Langdon Durum – wWld Emmer Wheat Chromosome Substitution Lines. Journal of Cereal Science 50: 29-35Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions

- (Peer Reviewed Journal)Friesen, T.L., Chu, C.G., Liu, Z.H., Xu, S.S., Halley, S., Faris, J.D. 2009. Host-selective toxins produced by Stagonospora nodorum confer disease susceptibility in adult wheat plants under field conditions. Theoretical and Applied Genetics. 118:1489-1497Development and characterization of expressed sequence tag  (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f.sp. tritici

- (Peer Reviewed Journal)Zhong, S., Leng, Y., Friesen, T.L., Faris, J.D., Szabo, L.J. 2009. Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f.sp. tritici. Phytopathology 99:282-289.The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat

- (Abstract Only)Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, INA Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat

- (Abstract Only)Zhang, Z., Gill, B.S., Faris, J.D. 2008. A Point Mutation Demonstrating the Pleiotropic Effects of the Domestication Gene Q in Hexaploid Wheat. Plant and Animal Genome Conference XVII, p. 686Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat

- (Abstract Only)Faris, J.D., Zhang, Z., Lu, H., Reddy, L., Lu, S., Simons, K.J., Fellers, J.P., Friesen, T.L. 2009. Map-Based Cloning of the Fungal Toxin Sensitivity Gene Tsn1 in Wheat. Plant and Animal Genome Conference XVII abstracts p. 305Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f. sp. tritici

- (Abstract Only)Zhong, S., Leng, Y., Friesen, T.L., Faris, J.D., Szabo, L.J. 2008. Development and characterization of expressed sequence tag (EST)-derived microsatellite markers for the wheat stem rust fungus, Puccinia graminis f. sp. tritici. APS Annual Meeting. 98(6):S180Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust

- (Peer Reviewed Journal)Faris, J.D., Xu, S.S., Xiwen, C., Friesen, T.L., Jin, Y. 2008. Molecular and cytogenetic characterization of a durum wheat Aegilops speltoides chromosome translocation conferring resistance to stem rust. Chromosome Research. 16(8): 1097-1105.A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance.

- (Peer Reviewed Journal)Abu, Q.M., Liu, Z., Faris, J.D., Chao, S., Edwards, M.C., Lai, Z., Franckowiak, J.D., Friesen, T.L. 2008. A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Theoretical and Applied Genetics. 117:1261-1270Chromosome Location and Characterization of Genes for Grain Protein Content in Triticum dicoccoides

- (Proceedings)Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides.  In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia.  Pp 572-574.Identification of chromosomes responsible for crown rot resistance in durum wheat

- (Proceedings)Zheng, Z., H.B. Li, J. Ma, S. Chakraborty, J.D. Faris, S.S. Xu, and C.J. Liu. 2008. Identification of chromosomes responsible for crown rot resistance in durum wheat.  In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Wheat Genet.  Symp., vol. 3.  Sydney University Press, Sydney, Australia.  Pp 770-772.Development,Identification and Validation of Markers for Mmarker-Assisted Selection Against the Stagonospora nodorum Toxin Ssensitivity Genes Tsn1 and Snn2 in Wheat

- (Peer Reviewed Journal)Zhang, Z., Friesen, T.L., Simons, K.J., Xu, S.S., Faris, J.D. 2009. Development,Identification and Validation of Markers for Mmarker-Assisted Selection Against the Stagonospora nodorum Toxin Ssensitivity Genes Tsn1 and Snn2 in Wheat. Molecular Breeding,23:35-49.IDENTIFICATION, CLONING, AND CHARACTERIZATION OF SNTOX3 USING HETEROLOGOUS EXPRESSION TRANSFORMATION, AND SITE DIRECTED GENE DISRUPTION

- (Abstract Only)Friesen, T.L., Liu, Z.H., Zhang, Z., Faris, J.D., Solomon, P.S., Tan, K.C., Ferguson, H.M., Oliver, R.P. 2008. Identification, cloning, and characterization of sntox3 using heterologous expression transformation, and site directed gene disruption. Meeting Abstract. 7th Mycosphaerella Stagonospora Symposium, Ascona, Switzerland, August 18-22, 2008CHARACTERIZATION OF THE ROLE OF HOST-SELECTIVE TOXINS IN THE STAGONOSPORA NODORUM - WHEAT PATHOSYSTEM SHOWS AN INVERSE GENE-FOR-GENE STRUCTURE

- (Abstract Only)Friesen, T.L., Liu, Z., Zhang, Z., Solomon, P.S., Oliver, R.P., Faris, J.D. 2008. Characterization of the role of host-selective toxins in the stagonospora nodorum - wheat pathosystem shows an inverse gene-for-gene structure. 7th Mycosphaerella Stagonospora Symposium in Ascona, Switzerland, August 18-22, 2008.Chromosome engineering to enhance utility of alien-derived stem rust resistance

- (Proceedings)Xu, S.S., I.S. Dundas, M.O. Pumphrey, Y. Jin, J.D. Faris, X. Cai, L.L. Qi, B.R. Friebe, and B.S. Gill. 2008. Chromosome engineering to enhance utility of alien-derived stem rust resistance.  In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 1.  Sydney University Press, Sydney, Australia.  Pp 12-14.Identification of novel tan spot resistance loci beyond the known host-selective toxin insensitivity genes in wheat

- (Peer Reviewed Journal)Chu, C., Friesen, T.L., Xu, S.S., Faris, J.D. 2008. Identification of novel tan spot resistance loci beyond the known host-selective toxin insensitivity genes in wheat. Theoretical and Applied Genetics 117:873-881Acc homoeoloci and the evolution of wheat genomes

- (Peer Reviewed Journal)Chalupska, D., Lee, H.Y., Faris, J.D., Evrard, A., Chalhoub, B., Haselkorn, R., Gornicki, P. 2008. Acc homoeoloci and the evolution of wheat genomes. Proceedings of the National Academy of Sciences. 105:9691-9696Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem

- (Proceedings)Faris, J.D., Lu, H.J., Zhang, Z., Liu, Z.H., Xu, S.S., Chu, C.G., Abeysekara, N., Fellers, J.P., Cloutier, S., Keller, B., Scofield, S.R., Friesen, T.L. 2008. Genetics of host-pathogen interactions in the wheat-Stagonospora nodorum pathosystem. International Wheat Conference Proceedings. Australia Aug 24-29Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes

- (Peer Reviewed Journal)Reedy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. The Plant Genome. 1:55-66Host specific toxins; effectors of necrotrophic pathogenicity

- (Peer Reviewed Journal)Friesen, T.L., Faris, J.D., Solomon, P.S., Oliver, R.P. 2008. Host specific toxins; effectors of necrotrophic pathogenicity. Cellular Microbiology. 10(7) 1421-1428Whole Genome Mapping in a Wheat Doubled Haploid Population Using SSRs and TRAPS and the Identification of QTL for Agronomic Traits

- (Peer Reviewed Journal)Chu, C., Xu, S.S., Friesen, T.L., Faris, J.D. 2008. Whole Genome Mapping in a Wheat Doubled Haploid Population Using SSRs and TRAPS and the Identification of QTL for Agronomic Traits. Molecular Breeding. 22:251-266Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q

- (Peer Reviewed Journal)Faris, J.D., Zhang, Z., Fellers, J.P., Gill, B.S. 2008. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Functional and Integrative Genomics. 8:149-164Evaluation of seedling resistance to tan spot and Stagonospora nodorum blotch in tetraploid wheat

- (Peer Reviewed Journal)Chu, C.G., Friesen, T.L., Faris, J.D., Xu, S.S. 2008. Evaluation of seedling resistance to tan spot and Stagonospora nodorum blotch in tetraploid wheat. Crop Science.  48:1107-1116Seedling resistance to tan spot and Stagonospora nodorum leaf blotch in wild emmer wheat (Triticum dicoccoides)

- (Peer Reviewed Journal)Chu, C.G., Xu, S.S., Faris, J.D., Nevo, E., Friesen, T.L. 2007. Seedling resistance to tan spot and Stagonospora nodorum leaf blotch in wild emmer wheat (Triticum dicoccoides). Plant Disease. 92:1239-1236The emergence of tan spot disease caused by toxigenic Pyrenophora tritici-repentis in Australia is not associated with increased deployment of toxin-sensitive cultivors.

- (Peer Reviewed Journal)Oliver, R.P., Lord, M., Rybak, K., Faris, J.D., Solomon, P.S. 2008. The emergence of tan spot disease caused by toxigenic Pyrenophora tritici-repentis in Australia is not associated with increased deployment of toxin-sensitive cultivors.. Phytopathology. 98:488-191Identification of seed dormancy for four populations derived from synthetic hexaploid wheat

- (Abstract Only)Gu, X., Ren, S., Chu, C., Glover, K., Xu, S.S., Faris, J.D., Friesen, T.L., Ibrahim, A. 2007. Identification of seed dormancy for four populations derived from synthetic hexaploid wheat. Plant and Animal Genome Conference. December 1-2, 2007 Kansas City MO.Genetic characterization of a novel wheat-Stagonospora nodorum host-selective toxin interaction and it role in disease susceptibility

- (Peer Reviewed Journal)Friesen, T.L., Zhang, Z., Solomon, P.S., Oliver, R.P., Faris, J.D. 2008. Genetic characterization of a novel wheat-Stagonospora nodorum host-selective toxin interaction and it role in disease susceptibility. Plant Physiology. 146:682-693Progress Toward Map-Based Cloning of an Avirulence Gene from Pyrenophora teres f. teres

- (Abstract Only)Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2008. Progress Toward Map-Based Cloning of an Avirulence Gene from Pyrenophora teres f. teres. International Congress of Plant Pathology Abstracts and Proceedings. 90(S2):229Stagonospora nodorum utilizes a sophisticated inverse gene-for-gene system involving proteinaceous host-selective toxins interacting with dominant wheat sensitivity genes

- (Abstract Only)Friesen, T.L., Faris, J.D., Liu, Z., Solomon, P.S., Oliver, R.P. 2008. Stagonospora nodorum utilizes a sophisticated inverse gene-for-gene system involving proteinaceous host-selective toxins interacting with dominant wheat sensitivity genes. 9th International Congress of Plant Pathology Abstracts and Proceedings, Torino, Italy, AUg  24-29, 2008.Multiple host-specific toxins, lateral gene transfer and gene loss in the evolution of cereal Pleosporalean pathogens

- (Abstract Only)Oliver, R.P., Solomon, P.S., Hane, J., Ferguson-Hunt, M., Mcdonald, B.A., Faris, J.D., Friesen, T.L. 2008. Multiple host-specific toxins, lateral gene transfer and gene loss in the evolution of cereal Pleosporalean pathogens. International Congress of Plant Pathology Abstracts and Proceedings. Torino, Italy, August 24-29, 2008.Progress towards the construction of a sequence-ready physical map of the 3AS chromosome arm of hexaploid wheat

- (Abstract Only)Gill, B., Li, W., Sehgal, S.K., Faris, J.D., Reddy, L., Devos, K.M., Buell, R., Gornicki, P., Rabinowicz, P.D., Dolezel, J., Simkova, H., Safar, J., Ma, Y., Chen, F., Lucretti, S., You, F.M., Luo, M. 2008. Progress towards the construction of a sequence-ready physical map of the 3AS chromosome arm of hexaploid wheat. Plant and Animal Genome Conference XVI abstracts pg. 9Molecular Mapping of the leaf rust resistance gene Lr17a in Wheat

- (Peer Reviewed Journal)Barrett, B., Faris, J.D., Fellers, J.P. 2008. Molecular Mapping of the leaf rust resistance gene Lr17a in Wheat. Crop Science.48:1124-1128.Genetics and Genomics of Wheat Domestication-Driven Evolution

- (Proceedings)Gill, B., Li, W., Sood, S., Kuraparthy, V., Friebe, B., Simons, K.J., Zhang, Z., Faris, J.D. 2008. Genetics and Genomics of Wheat Domestication-Driven Evolution Israel Journal of Plant Science. 55:223-229Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat

- (Abstract Only)Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Scofield, S.R., Faris, J.D. 2007. Wheat-rice colinearity and chromosome walking at the Snn1 locus in wheat. Meeting Abstract. National Wheat Genomics Conference Abstracts. pg 28Exploring the functional roles of the Q gene homoeoalleles in wheat

- (Abstract Only)Zhang, Z., Simons, K.J., Gill, B.S., Faris, J.D. 2007. Exploring the functional roles of the Q gene homoeoalleles in wheat. Meeting Abstract. National Wheat Genomics Abstracts pg. 6Toward a better understanding of a major FHB resistance QTL in tetraploid wheat

- (Abstract Only)Zhu, X., Chen, X., Faris, J.D., Hu, J., Stack, R.S., Adhikari, T., Elias, E.M., Kianian, S.F., Cai, X. 2007. Toward a better understanding of a major FHB resistance QTL in tetraploid wheat. Meeting Abstract. National Wheat Genomics Conference abstracts p. 12Whole genome mapping and QTL analysis in a doubled haploid population derived from the cross between a synthetic hexaploid wheat and hard red spring wheat

- (Abstract Only)Chu, C., Xu, S.S., Friesen, T.L., Faris, J.D. 2007. Whole genome mapping and QTL analysis in a doubled haploid population derived from the cross between a synthetic hexaploid wheat and hard red spring wheat. Meeting Abstract. National Wheat Conference Abstract pg 20.Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q

- (Abstract Only)Faris, J.D., Zhang, Z., Fellers, J.P., Gill, B.S. 2008. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q. Plant and Animal Genome Conference XVI abstract pg. 262.Genomic analysis of the Tsn1 locus and the identification of candidate genes

- (Abstract Only)Faris, J.D., Lu, H., Zhang, Z., Reddy, L., Fellers, J.P., Friesen, T.L. 2008. Genomic analysis of the Tsn1 locus and the identification of candidate genes. Plant and Animal Genome ConferenceXVI abstracts pg. 305Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem

- (Abstract Only)Faris, J.D., Friesen, T.L., Lu, H., Reddy, L., Zhang, Z., Liu, Z., Xu, S.S., Meinhardt, S.W., Fellers, J.P., Oliver, R.P., Solomon, P.S., Chao, S., Chu, C., Abeysekara, N., Scofield, S.R. 2007. Genetic analysis of host-toxin interactions in the wheat-Stagonospora nodorum pathosystem. Meeting Abstract. National Wheat Genomics Conference abstracts pg. 11ITEMS FROM NORTH DAKOTA: USDA-ARS CEREAL CROPS RESEARCH UNIT

- (Other)Faris, J.D., Xu, S.S., Friesen, T.L., Klindworth, D.L., Simons, K.J., Chao, S. 2007. Items from north dakota: usda-ars cereal crops research unit. 2007 Annual Wheat Newsletter. pg. 141-148Identification and Characterization of Segregation Distortion Loci Along Chromosome 5B in Tetraploid Wheat

- (Peer Reviewed Journal)Kumar, S., Gill, B.S., Faris, J.D. 2007. Identification and Characterization of Segregation Distortion Loci Along Chromosome 5B in Tetraploid Wheat. Molecular Genetics and Genomics. 278:187-196.The Stagonospora nodorum-wheat pathosystem is an inverse gene-for-gene system involving multiple proteinaceous host-selective toxins

- (Peer Reviewed Journal)Friesen, T.L., Meinhardt, S.W., Faris, J.D. 2007. The Stagonospora nodorum-wheat pathosystem involves multiple proteinaceous host-selective toxins and corresponding host sensitivity genes that interact in an inverse gene-for gene manner. Plant Journal. 51:681-692.GENETIC MAPPING AND QTL ANALYSIS OF PYREONPHORA TERES F. TERES GENES CONFERRING AVIRULENCE ON BARLEY.

- (Peer Reviewed Journal)Lai, Z., Faris, J.D., Weiland, J.J., Steffenson, B.J., Friesen, T.L. 2007. Genetic mapping of Pyreonphora teres f. teres genes conferring avirulence on barley. Fungal Genetics and Biology. 44:323-329.Stagonospora nodorum utilizes multiple proteinaceous host selective toxins which interact with dominant host sensitivity genes in wheat

- (Abstract Only)Friesen, T.L., Faris, J.D., Oliver, R.P. 2007. Stagonospora nodorum utilizes multiple proteinaceous host selective toxins which interact with dominant host sensitivity genes in wheat. Meeting Abstract. 24th Fungal Genetics Conference. p. 168.The initiation of map-based cloning of an avirulence gene from Pyrenophora teres

- (Abstract Only)Liu, Z., Faris, J.D., Edwards, M.C., Friesen, T.L. 2006. The initiation of map-based cloning of an avirulence gene from Pyrenophora teres. Meeting Abstract. 24th Fungal Genetics Conference. p. 159.Interspecific transfer of host-specific toxin genes in Stagonospora nodorum

- (Abstract Only)Oliver, R.P., Solomon, P.S., Hane, J., Stukenbrock, E.H., Mcdonald, B.A., Liu, Z., Faris, J.D., Friesen, T.L. 2007. Interspecific transfer of host-specific toxin genes in Stagonospora nodorum. Meeting Abstract. 24th Fungal Genetics Conference. p. 61.Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat

- (Peer Reviewed Journal)Kumar, S., Stack, R.W., Friesen, T.L., Faris, J.D. 2007. Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat. Phytopathology. 97:592-597.Functional Characterization of Ptr ToxA and Molecular Identification of its Intracellular Targeting Protein in Wheat

- (Abstract Only)Tai, Y., Bragg, J., Lu, H., Edwards, M.C., Faris, J.D., Friesen, T.L., Meinhardt, S.W. 2007. Functional Characterization of Ptr ToxA and Molecular Identification of its Intracellular Targeting Protein in Wheat. Plant and Animal Genome VX Conference Abstracts. p.Identification of candidate genes associated with signaling networks regulated by the Q gene in wheat

- (Abstract Only)Tai, Y., Simons, K.J., Xu, S.S., Faris, J.D. 2007. Identification of candidate genes associated with signaling networks regulated by the Q gene in wheat. Plant and Animal Genome VX Conference Abstracts. p. 300.Delineation of the wheat Tsn1 candidate gene region

- (Abstract Only)Lu, H., Fellers, J.P., Tai, Y., Meinhardt, S.W., Friesen, T.L., Faris, J.D. 2007. Delineation of the wheat Tsn1 candidate gene region. Plant and Animal Genome VX Conference Abstracts. p. 174.Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat

- (Abstract Only)Faris, J.D., Kumar, S., Friesen, T.L. 2007. Identification of a novel Fusarium head blight resistance QTL on chromosome 7A in tetraploid wheat. Plant and Animal Genome VX Conference Abstracts. p. 179.Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat

- (Abstract Only)Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2007. Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat. Plant and Animal Genome VX Conference Abstracts. p. 176.Molecular characterization of the AP2-like Q gene homoeoallele on chromosome 5D in hexaploid wheat

- (Abstract Only)Zhang, Z., Simons, K.J., Faris, J.D. 2007. Molecular characterization of the AP2-like Q gene homoeoallele on chromosome 5D in hexaploid wheat. Plant and Animal Genome VX Conference Abstracts. p. 300.The Stagonospora nodorum-wheat pathosystem is an inverse gene for gene system involving multiple proteinaceous host selective toxins

- (Abstract Only)Friesen, T.L., Faris, J.D., Oliver, R. 2007. The Stagonospora nodorum-wheat pathosystem is an inverse gene for gene system involving multiple proteinaceous host selective toxins. Plant and Animal Genome VX Conference Abstracts. p. 179.Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat

- (Peer Reviewed Journal)Chen, X., Faris, J.D., Hu, J., Stack, R.W., Adhikari, T., Elias, E.M., Kianian, S.F., Cai, X. 2006. Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat. Molecular Breeding. 19:113-124.GENETIC MAPPING OF PYRENOPHORA TERES AVIRULENCE GENES

- (Proceedings)Friesen, T.L., Lai, Z., Liu, Z., Faris, J.D., Steffenson, B.J. 2006. Genetic mapping of pyrenophora teres avirulence genes. In: Proceedings of the 3rd International Workshop on Barley Leaf Blight. July 23-27, 2005, Edmonton, Canada. p.THE TSN1-TOXA INTERACTION IN THE WHEAT-STAGONOSPORA NODORUM PATHOSYSTEM PARALLELS THAT OF THE WHEAT-TAN SPOT SYSTEM

- (Peer Reviewed Journal)Liu, Z., Friesen, T.L., Hua, L., Meinhardt, S.W., Oliver, R., Rassmussen, J.B., Faris, J.D. 2007. The tsn1-toxa interaction in the wheat-stagonospora nodorum pathosystem parallels that of the wheat-tan spot system. Genome. 49:1265-1273.Emergence of a new disease as a result of interspecific virulence gene transfer

- (Peer Reviewed Journal)Friesen, T.L., Stukenbrock, E.H., Liu, Z., Meinhardt, S., Ling, H., Faris, J.D., Rasmussen, J.B., Solomon, P.S., McDonald, B.A., Oliver, R.P. 2006. Emergence of a new disease as a result of interspecific virulence gene transfer. Nature Genetics. 38(8):953-956.IDENTIFICATION AND CHROMOSOMAL LOCATION OF MAJOR GENES FOR RESISTANCE TO PYRENOPHORA TERES F. TERES AND P. TERES F. MACULATA IN BARLEY DOUBLED HAPLOID POPULATION.

- (Peer Reviewed Journal)Friesen, T.L., Faris, J.D., Lai, Z., Steffenson, B.J. 2006. Identification and chromosomal location of major genes for resistance to Pyrenophora teres in a doubled-haploid barley population. Genome. 49:855-859MOLECULAR MAPPING OF HYBRID NECROSIS GENES NE1 AND NE2 IN HEXAPLOID WHEAT USING MICROSATELLITE MARKERS.

- (Peer Reviewed Journal)Chu, C.-G, Faris, J.D., Friesen, T.L., Xu, S.S. 2006. Molecular mapping of hybrid necrosis genes Ne1 and Ne2 in hexaploid wheat using microsatellite markers. Theoretical and Applied Genetics. 112:1374-1381.GENOMIC ANALYSIS AND MARKER DEVLOPMENT FOR THE TSN1 LOCUS IN WHEAT USING BIN-MAPPED ESTS AND FLANKING BAC CONTIGS.

- (Peer Reviewed Journal)Lu, H., Fellers, J.P., Friesen, T.L., Faris, J.D. 2006. Genomic analysis and marker devlopment for the TSN1 locus in wheat using bin-mapped ests and flanking bac contigs. Theoretical and Applied Genetics. 112:1132-142.EVALUATION OF MACRO AND MICROCOLINEARITY BETWEEN THE GENOMIC REGION OF WHEAT CHROMOSOME 5B CONTAINING THE TSN1 GENE AND THE RICE GENOME.

- (Peer Reviewed Journal)Lu, H., Faris, J.D. 2006. Macro- and microcolinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome. Functional and Integrative Genomics. 6:90-103.MOLECULAR TAGGING OF TSN1 IN WHEAT: COMPARING FEASIBILITY OF BIN-MAPPED EST MARKERS WITH AFLP-BSA AND PREVIOUSLY MAPPED RFLPS AND SSRS

- (Abstract Only)Lu, H., Faris, J.D. Molecular tagging of tsn1 in wheat: comparing feasibility of bin-mapped est markers with aflp-bsa and previously mapped rflps and ssrs. 2005 American Society of Agronomy Abstracts, p. 310.FUNCTIONAL ANALYSIS OF THE DOMESTICATION GENE Q IN WHEAT.

- (Abstract Only)Zhang, Z., Tai, Y., Simons, K.J., Fellers, J.P., Gill, B.S., Faris, J.D. 2006. Functional analysis of the domestication gene q in wheat [abstract]. Plant and Animal Genome XIV Conference. Abstact No. P828:307.IDENTIFICATION OF A FUSARIUM HEAD BLIGHT RESISTANCE QTL ON CHROMOSOME 6B IN TETRAPLOID WHEAT.

- (Abstract Only)Stack, R., Faris, J.D. 2006. Identification of a fusarium head blight resistance QTL on chromosome 6b in tetraploid wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P285:172.HIGH-RESOLUTION MAPPING AND CHROMOSOME WALKING AT THE SNN1 LOCUS ON CHROMOSOME 1B IN WHEAT.

- (Abstract Only)Reddy, L., Friesen, T.L., Meinhardt, S.W., Faris, J.D. 2006. High-resolution mapping and chromosome walking at the snn1 locus on chromosome 1b in wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P349:188.MOLECULAR MAPPING OF HYBRID NECROSIS GENES NE1 AND NE2 IN HEXAPLOID WHEAT USING MICROSATELLITE MARKERS

- (Abstract Only)Chu, C., Faris, J.D., Friesen, T.L., Xu, S.S. 2006. Molecular mapping of hybrid necrosis genes Ne1 and Ne2 in hexaploid wheat using microsatellite markers [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P280:171.APPLICATIONS OF FUNCTIONAL GENOMICS IN STUDIES OF  WHEAT DOMESTICATION AND DISEASE RESISTANCE

- (Abstract Only)Tai, Y., Faris, J.D., Friesen, T.L., Xu, S.S., Meinhardt, S.W., Stack, R.W., Simons, K., Bragg, J., Edwards, M.C. 2006. Applications of functional genomics in studies of wheat domestication and disease resistance [abstracts]. Plant and Animal Genome XIV Conference. Abstract No. P830:307.SATURATION MAPPING OF THE MAJOR FHB RESISTANCE QTL QFHS.NDSU-3AS IN TETRAPLOID WHEAT

- (Abstract Only)Chen, X., Faris, J.D., Jinguo, H., Stack, R., Adhikari, T., Kianian, S., Cai, X. 2006. Saturation mapping of the major FHB resistance QTL Qfhs.ndsu-3AS in tetraploid wheat. Plant and Animal Genome XIV Conference Abstracts, P291.Molecular Characterization of the Major Wheat Domestication Gene Q

- (Peer Reviewed Journal)Simons, K.J., Fellers, J.P., Trick, H.N., Zhang, Z., Tai, Y., Gill, B.S., Faris, J.D. 2006. Molecular Characterization of the Major Wheat Domestication Gene Q. Genetics. 172:547-555.THE WHEAT SUPER DOMESTICATION GENE Q.  (WHEAT INFORMATION SERVICE, "FRONTIERS OF BIOSCIENCES")

- (Review Article)Faris, J.D., Simons, K.J., Zhang, Z., Gill, B. 2005. The wheat super domestication gene Q. Frontiers of Wheat Bioscience. 100:129-148.A NEW HOST SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM AND ITS SIGNIFICANCE IN DISEASE USING A SEGREGATING WHEAT MAPPING POPULATION.

- (Abstract Only)Friesen, T.L., Faris, J.D., Meinhardt, S.W. 2005. A new host selective toxin produced by stagonospora nodorum and its significance in disease using a segregating wheat mapping population. American Phytopathological Society Abstracts. Vol. 95:S32.GENOMIC MAPPING OF TOXIN SENSITIVITY AND QUANTITATIVE TRAIT LOCI FOR SEEDLING RESISTANCE TO STAGONOSPORA NODORUM IN WHEAT.

- (Abstract Only)Liu, Z.H., Friesen, T.L., Ling, H., Meinhardt, S.W., Rasmussen, J.B., Faris, J.D. 2006. Genomic mapping of toxin sensitivity and quantitative trait loci for seedling resistance to stagonospora nodorum in wheat. Phytopathology. 95:S62A WHEAT INTERVARIETAL GENETIC LINKAGE MAP BASED ON MICROSATELLITE AND TARGET REGION AMPLIFIED POLYMORPHISM MARKERS AND ITS UTILITY FOR DETECTING QUANTITATIVE TRAIT LOCI.

- (Peer Reviewed Journal)Liu, Z., Anderson, J.A., Hu, J., Friesen, T.L., Rasmussen, J.B., Faris, J.D. 2005. A wheat intervarietal genetic linkage map based on microsatellite and target region amplified polymorphism markers and its utility for detecting quantitative trait loci. Theoretical and Applied Genetics. Vol. 111:792-794.MOLECULAR CYTOGENETIC CHARACTERIZATION AND SEED STORAGE PROTEIN ANALYSIS OF 1A/1D TRANSLOCATION IN DURUM WHEAT.

- (Peer Reviewed Journal)Xu, S.S., Faris, J.D., Cai, X., Klindworth, D.L. 2005. Molecular cytogenetic characterization and seed storage protein analysis of 1a/1d translocation in durum wheat. Chromosome Research. 13:559-568.IDENTIFICATION OF QUANTITATIVE TRAIT LOCI FOR RACE-NONSPECIFIC RESISTANCE TO TAN SPOT IN WHEAT.

- (Peer Reviewed Journal)Faris, J.D., Friesen, T.L. 2005. Identification of quantitative trait loci for race-nonspecific resistance to tan spot in wheat. Theoretical and Applied Genetics. Vol. 111:386-392.MOLECULAR MAPPING OF RESISTANCE TO PYRENOPHORA TRITICI-REPENTIS RACE 5 SENSITIVITY TO PTRTOXB IN WHEAT.

- (Abstract Only)Faris, J.D., Friesen, T.L. 2004. Molecular mapping of resistance to pyrenophora tritici-repentis race 5 sensitivity to ptrtoxb in wheat.. Plant and Animal Genome Abstracts pg. 186.UTILIZATION OF MOLECULAR MARKERS IN THE CHARACTERIZATION AND DEVELOPMENT OF GERMPLASM OF AND GENETIC STOCKS IN WHEAT.

- (Abstract Only)Xu, S.S., Faris, J.D., Klindworth, D.L., Cai, X., Hu, J. 2004. Utilization of molecular markers in the characterization and development of germplasm of and genetic stocks in wheat.. Plant and Animal Genome Abstracts. [Online.]Available at http://www.intl-pag.org/13/abstracts/PAG13_W225.html. Plant & Animal Genomes XIII Conference, January 15-19, 2005. San Diego, CA.MOLECULAR CYTOGENETIC CHARACTERIZATION AND SEED STORAGE PROTEIN ANALYSIS OF 1A/1D TRANSLOCATION LINES OF DURUM WHEAT CARRYING GLU-DLD.

- (Abstract Only)Xu, S.S., Faris, J.D., Cai, X., Klindworth, D.L. 2004. Molecular cytogenetic characterization and seed storage protein analysis of 1a/1d translocation lines of durum wheat carrying glu-dld.. Plant and Animal Genome Abstracts.[Online.] Available at http://www.intl-pag.org/13/abstracts/PAG13_P239.html. Plant & Animal Genomes XIII Conference, January 15-19, 2005. San Diego,CA.TARGETING TSN1 IN WHEAT: COLINEARITY WITYH RICE, CHROMOSOME WALKING, AND MARKER-ASSISTED SELECTION.

- (Abstract Only)Faris, J.D., Lu, H., Friesen, T.L., Haen, K.M., Fellers, J.P., Xu, S.S., Meinhardt, S.W. 2005. Targeting Tsn1 in wheat: colinearity with rice, chromosome walking, and marker-assisted selection. Plant and Animal Genome Abstracts. p. 195.A FLORAL HOMEOTIC GENE KEY TO THE DOMESTICATION OF WHEAT.

- (Abstract Only)Faris, J.D., Simons, K.J., Fellers, J.P., Trick, H.N., Gill, B.S. 2005. A floral homeotic gene key to the domestication of wheat. Plant and Animal Genome Abstracts. p. 186.MAPPING OF TOXIN SENSITIVITY AND QTL ANALYSIS OF SEEDLING RESISTANCE TO STAGONOSPORA NODORUM BLOTCH IN AN INTERVARIETAL HARD RED SPRING WHEAT POPULATION.

- (Abstract Only)Liu, Z., Friesen, T.L., Meinhardt, S.W., Rasmussen, J.B., Faris, J.D. 2005. Mapping of toxin sensitivity and QTL analysis of seedling resistance to stagonospora nodorum blotch in an intervarietal hard red spring wheat population. Plant and Animal Genome Abstracts. p. 342.COMPARATIVE ANALYSES OF A GENE RICH REGION OF WHEAT CHROMOSOME 5B WITH RICE USING EXPRESSED SEQUENCES.

- (Abstract Only)Lu, H., Faris, J.D. Comparative analyses of a gene rich region of wheat chromosome 5b with rice using expressed sequences.. Plant and Animal Genome XIII Abstracts p. 259.A HARD RED SPRING WHEAT INTERVARIETAL GENETIC LINKAGE MAP CONSTRUCTED USING MICROSATELLITE AND TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS.

- (Abstract Only)Liu, Z., Friesen, T.L., Rasmussen, J.B., Hu, J., Faris, J.D. 2005. A hard red spring wheat intervarietal genetic linkage map constructed using microsatellite and target region amplification polymorphism (TRAP) markers.Plant and Animal Genome Abstracts. p.351.ISOLATION AND CHARACTERIZATION OF THE MAJOR DOMESTICATION GENE Q IN WHEAT.

- (Abstract Only)Simons, K.J., Fellers, J.P., Trick, H.N., Gill, B.S., Faris, J.D. 2005. Isolation and characterization of the major domestication gene Q in wheat.. Plant and Animal Genome Abstracts. p. 72.TOWARDS POSITIONAL CLONING OF THE TSN1 GENE IN WHEAT.

- (Abstract Only)Lu, H., Fellers, J.P., Friesen, T.L., Meinhardt, S.W., Haen, K.M., Faris, J.D. 2005. Towards positional cloning of the Tsn1 gene in wheat. Plant and Animal Genome Abstracts. p. 359.MAPPING OF A MAJOR NET BLOTCH RESISTANCE GENE IN THE Q21861 X SM89010 DOUBLED HAPLOID POPULATION.

- (Abstract Only)Friesen, T.L., Faris, J.D., Steffenson, B.J. 2004. Mapping of a major net blotch resistance gene in the Q21861 x SM89010 doubled haploid population.. American Phytopathological Society Abstracts. Vol. 91:532GENETIC AND PHYSICAL MAPPING OPF A GENE CONDITIONING SENSITIVITY IN WHEAT TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM.

- (Peer Reviewed Journal)Liu, Z.H., Faris, J.D., Meinhardt, S.W., Ali, S., Rasmussen, J.B., Friesen, T.L. 2004. Genetic and physical mapping opf a gene conditioning sensitivity in wheat to a partially purified host-selective toxin produced by stagonospora nodorum. Phytopathology. Vol. 94:1056-1060.QTL ANALYSIS AND MAPPING OF RESISTANCE TO STAGONOSPORA NODORUM LEAF BLOTCH IN WHEAT.

- (Peer Reviewed Journal)Liu, Z.H., Friesen, T.L., Rasmussen, J.B., Ali, S., Meinhardt, S.W., Faris, J.D. 2004. Qtl analysis and mapping of seedling resistance to stagonospora nodorum leaf blotch in wheat.. Phytopathology. Vol.94:1061-1067.POSITIONAL CLONING OF THE Q GENE IN WHEAT (ABSTRACT FOR THE 2004 INTERNATIONAL TRITICEAE MAPPING INITIATIVE WORKSHOP PROCEEDINGS. MPLS MN, MAY 22-25, 2004.

- (Abstract Only)Faris, J.D., Gill, B.S., Simons, K.J., Fellers, J.P., Trick, H.N. 2004. Positional cloning of the Q gene in wheat. International Triticeae Mapping Initiative Workshop Proceedings. May 22-25, 2004, Minneapolis, MN. 2004  Program Abstracts. p. 22.GENOME MAPPING

- (Review Article)Faris, J.D., Friebe, B., Gill, B.S. 2004. Genome mapping. Encyclopedia of Grain Science. p. 7-16.ITEMS FROM NORTH DAKOTA: THE USDA-ARS CEREAL CROPS RESEARCH UNIT.

- (Other)Faris, J.D., Friesen, T.L., Xu, S.S. 2004. Items from north dakota: the usda-ars cereal crops research unit.. Wheat Newsletter. vol. 50:252-257MOLECULAR MAPPING OF RESISTANCE TO PYRENOPHORA TRITICI-REPENTIS RACE 5 AND SENSITIVITY TO PTR TOXB IN WHEAT.

- (Peer Reviewed Journal)Friesen, T.L., Faris, J.D. 2004. Molecular mapping of resistance to pyrenophora tritici-repentis race 5 and sensitivity to ptr toxb in wheat.. Theoretical and Applied Genetics. Vol. 109:464-471.GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING OF THE TSN1 GENE IN WHEAT.

- (Peer Reviewed Journal)Haen, K.M., Lu, H., Friesen, T.L., Faris, J.D. 2004. Genomic targeting and high-resolution mapping of the tsn1 gene in wheat. Crop Science. Vol 44:951-962.MAPPING OF WHEAT SENSITIVITY TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN PRODUCED BY STAGONOSPORA NODORUM.

- (Proceedings)Liu, Z., Friesen, T.L., Faris, J.D., Meinhardt, S., Ali, S., Rasmussen, J. 2003. Mapping of wheat sensitivity to a partially purified host-selective toxin produced by Stagonospora nodorum. Proceedings of the 6th International Symposium on Septoria/Stagonospora Diseases of Cereals. Dec. 8-12, 2003, Tunis, Tunisia. p. 139-142.TRAP (TARGET REGION AMPLIFICATION POLYMORPHISM) TECHNIQUE AND ITS APPLICATION TO CROP GENOMICS

- (Abstract Only)Hu, J., Miller, J.F., Xu, S.S., Faris, J.D., Miklas, P.N., Ochoa, O., Truco, M., Berville, A., Vick, B.A. 2004. Trap (target region amplification polymorphism) technique and its application to crop genomics [abstract]. Plant and Animal Genome XII Abstracts, January 10-14, 2004, San Diego, CA. W169. p. 47.GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING OF THE TSN1 GENE IN WHEAT.

- (Abstract Only)Haen, K.M., Lu, H., Friesen, T.L., Faris, J.D. 2004. Genomic targeting and high-resolution mapping of the Tsn1 gene in wheat. 12th Plant and Animal Genome Abstracts. p. 438.CHROMOSOMAL LOCATION OF GENES FOR NOVEL GLUTENINS AND GLIADINS IN EMMER WHEAT (TRITICUM TURGIDUM L. VAR. DICOCCOIDES).

- (Peer Reviewed Journal)Xu, S.S., Khan, K., Klindworth, D.L., Faris, J.D., Nygard, G. 2004. Chromosomal location of genes for novel glutenins and gliadins in emmer wheat (triticum turgidum l. var. dicoccoides). Theoretical and Applied Genetics. Vol. 108:1221-1228.HIGH-THROUGHPUT MARKER IDENTIFICATION AND MAPPING IN WHEAT USING TRAPS (TARGET REGION AMPLIFICATION POLYMORPHISM).

- (Abstract Only)Faris, J.D., Xu, S.S., Liu, Z., Hu, J. 2004. High-throughput marker identification and mapping in wheat using traps (target region amplification polymorphism). Plant and Animal Genomes XII Conference Abstracts. January 10-14, 2004. San Diego, CA. p. 120.QTL ANALYSIS AND MAPPING OF RESISTANCE TO STAGONOSPORA NODORUM LEAF BLOTCH IN WHEAT

- (Abstract Only)Liu, Z., Friesen, T.L., Meinhardt, S., Ali, S., Rasmussen, J.B., Faris, J.D. 2004. QTL analysis and mapping of resistance to Stagonospora nodorum leaf blotch in wheat. 12th Plant and Animal Genome Abstracts. p. 459.CHROMOSOMAL LOCATION OF GENES FOR NOVEL GLUTENINS AND GLIADINS IN WILD EMMER WHEAT.

- (Abstract Only)Xu, S.S., Khan, K., Klindworth, D.L., Faris, J.D., Nygard, G. 2004. Chromosomal location of genes for novel glutenins and gliadins in wild emmer wheat. 12th Plant and Animal Genome Abstracts.p. 178.GENETIC AND PHYSICAL MAPPING OF A GENE CONDITIONING SENSITIVITY IN WHEAT TO A PARTIALLY PURIFIED HOST-SELECTIVE TOXIN BY STAGONOSPORA NODORUM.

- (Abstract Only)Liu, Z., Faris, J.D., Meinhardt, S., Ali, S., Rasmussen, J., Friesen, T.L. 2004. Genetic and physical mapping of a gene conditioning sensitivity in wheat to a partially purified host-selective toxin by stagonospora nodorum.. Plant and Animal Genome Abstracts. p.185.MOLECULAR CLONING OF THE Q LOCUS IN WHEAT.

- (Abstract Only)Simons, K., Fellers, J.P., Trick, H., Gill, B.S., Faris, J.D. 2004. Molecular cloning of the Q locus in wheat. Plant and Animal Genome Abstracts. p. 110.THE CONSTRUCTION OF A BAC CONTIG FOR CHROMOSOME WALKING AT THE TSN1 LOCUS IN WHEAT.

- (Abstract Only)Lu, H., Haen, K., Fellers, J.P., Friesen, T.L., Heinhardt, S., Faris, J.D. 2004. The construction of a BAC contig for chromosome walking at the Tsn1 locus in wheat.. Plant and Animal Genome Abstracts. p. 180.EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR REACTION TO TAN SPOT, STAGONOSPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY.

- (Proceedings)FRIESEN, T.L., XU, S.S., FARIS, J.D., RASMUSSEN, J.B., MILLER, J.D., HARRIS, M. EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR REACTION TO TAN SPOT, STAGONOSPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY.. WHEAT GENETICS INTERNATIONAL SYMPOSIUM PROCEEDINGS. 2003. VOL. 3:1133-1135.MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TRAP (TARGET REGION AMPLIFICATION POLYMORPHISM) MARKERS

- (Abstract Only)Xu, S.S., Hu, J., Faris, J.D. 2003. Molecular characterization of the Langdon durum-Triticum dicoccoides chromosome substitution lines using TRAP (target region amplification polymorphism) markers. 10th Wheat Genetics International Symposium Proceedings. September, 1-6, 2003, Paestum, Italy. Abstract not published separately - published in proceedings. Vol. 1:91-94.MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS.

- (Proceedings)XU, S.S., HU, J., FARIS, J.D. MOLECULAR CHARACTERIZATION OF THE LANGDON DURUM-TRITICUM DICOCCOIDES CHROMOSOME SUBSTITUTION LINES USING TARGET REGION AMPLIFICATION POLYMORPHISM (TRAP) MARKERS.. WHEAT GENETICS INTERNATIONAL SYMPOSIUM PROCEEDINGS. 2003. VOL. 1:91-94.EVALUATION OF LANGDON DURUM-AEGILOPS TAUSCHII SYNTHETIC HEXAPLOID WHEATS FOR THEIR SEEDLING REACTION TO TAN SPOT, STAGONASPORA LEAF BLOTCH, LEAF RUST, STEM RUST, AND HESSIAN FLY

- (Abstract Only)ITEMS FROM NORTH DAKOTA:  THE USDA-ARS CEREAL CROPS RESEARCH UNIT

- (Other)Faris, J.D., Friesen, T.L., Xu, S.S. 2003. Items from North Dakota: The USDA-ARS Cereal Crops Research Unit. Wheat Newsletter. Vol. 215-218.A BACTERIAL ARTIFICIAL CHROMOSOME CONTIG SPANNING THE MAJOR DOMESTICATION LOCUS Q IN WHEAT AND IDENTIFICATION OF A CANDIDATE GENE

- (Peer Reviewed Journal)FARIS, J.D., FELLERS, J.P., BROOKS, S.A., GILL, B.S. A BACTERIAL ARTIFICIAL CHROMOSOME CONTIG SPANNING THE MAJOR DOMESTICATION LOCUS Q IN WHEAT AND IDENTIFICATION OF A CANDIDATE GENE. GENETICS. 2003. VOL. 164:311-321.WHEAT GENOMICS: EXPLORING THE POLYPLOID MODEL.

- (Peer Reviewed Journal)FARIS, J.D., FRIEBE, B., GILL, B.S. WHEAT GENOMICS: EXPLORING THE POLYPLOID MODEL.. CURRENT GENOMICS. 2002. VOL. 3:577-591.POLYPLOID GENOME ANALYSIS: GENOMIC TARGETING AND HIGH-RESOLUTION MAPPING   OF THE DOMESTICATION GENE Q IN WHEAT.

- (Peer Reviewed Journal)Faris, J.D., Gill, B.S. 2002. Polyploid genome analysis: genomic targeting and high-resolution mapping   of the domestication gene q in wheat. Genome 45:706-718.ITEMS FROM NORTH DAKOTA: THE USDA-ARS CEREAL CROPS RESEARCH UNIT

- (Other)Faris, J.D., Miller, J.D., Klindworth, D.L. Items from north dakota: the usda-ars cereal crops research unit. Annual Wheat Newsletter 48:249-251.GENES ENCODING PLASTID ACETYL-COA CARBOXYLASE AND 3-PHOSPHOGLYCERATE KINASE OF THE TRITICUM/AEGILOPS COMPLEX AND THE EVOLUTIONARY HISTORY OF POLYPLOID WHEAT.

- (Proceedings)Huang, S., Sirikhachornkit, A., Su, X., Faris, J.D., Gill, B., Haselkorn, R., Gornicki, P. 2002. Genes encoding plastid acetyl-coa carboxylase and 3-phosphoglycerate kinase of the triticum/aegilops complex and the evolutionary history of polyploid wheat. Proceedings of the National Academy of Sciences WA 99:8133-8138.PHYSICAL AND GENETIC MAPPING OF WHEAT NBS-LRR AND KINASE CLASS RESISTANCE  GENE ANALOGS

- (Peer Reviewed Journal)MALEKI,L., FELLERS,J.P., FARIS,J.D., BOWDEN,R.L., GILL,B.S., PHYSICAL AND GENETIC MAPPING OF WHEAT NBS-LRR AND KINASE CLASS RESISTANCE  GENE ANALOGS, CROP SCIENCE, 2002.  43:660-670.PHYLOGENETIC ANALYSIS OF THE ACETYL-COA CARBOXYLASE AND 3-PHOSPHOGLYCERATE KINASE LOCI IN WHEAT AND OTHER GRASSES.

- (Peer Reviewed Journal)Huang, S., Sirikhachornkit, A., Faris, J.D., Su, X., Gill, B.S., Haselkorn, R., Gornicki, P. 2002. Phylogenetic analysis of the acetyl-coa carboxylase and 3-phosphoglycerate kinase loci in wheat and other grasses. Plant Molecular Biology 48:805-820.CHROMOSOME MAPPING AND PHYLOGENETIC ANALYSIS OF THE CYTOSOLOC ACETYL-COA   CARBOXYLASE LOCI IN WHEAT.

- (Peer Reviewed Journal)Faris, J.D., Sirikhachornkit, A., Haselkorn, R., Gill, B., Gornicki, P. 2001. Chromosome mapping and phylogenetic analysis of the cytosoloc acetyl-coa   carboxylase loci in wheat. Molecular Biology and Evolution 18:1720-1733.ISOLATION AND CHARACTERIZATION OF NOVEL CDNA CLONES OF ACIDIC CHITINASES   AND BETA-1,3-GLUCANASES FROM WHEAT SPIKES INFECTED BY FUSARIUM GRAMINEARUM.

- (Peer Reviewed Journal)Li, W.L., Faris, J.D., Muthukrishnan, S., Liu, D.J., Chen, P.D., Gill, B.S. 2001. Isolation and characterization of novel cdna clones of acidic chitinases   and beta-1,3-glucanases from wheat spikes infected by fusarium graminearum. Journal of Theoretical and Applied Genetics 102:353-362.
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