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                    U.S. DEPARTMENT OF AGRICULTURE
 Plant, Soil and Nutrition Research: Ithaca, NY
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ARS Home Northeast Area Ithaca, New York Robert W. Holley Center for Agriculture & Health Plant, Soil and Nutrition Research People & Locations







Theodore William Thannhauser

(Ted)                                                                (PhD)
                        Plant, Soil and Nutrition Research

                        




                        
                        Protein Chemist
                        Phone: (607) 255-8808
                        
                        
                        Fax: (607) 254-6510(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsBiochemistry and Physiology of Crop Adaptation to Soil-Based Abiotic Stresses
                                                    In-House Appropriated
                                                                    (D)Accession Number: 443622Genetic Regulation of Fruit and Vegetable Nutritional Quality and Maturation and Technology Development
                                                    In-House Appropriated
                                                                    (D)Accession Number: 444024Promoting Tomato Fruit Folate Stabilization and Storage to Enhance Plant Nutrient Bioavailability
                                                    Interagency Reimbursable Agreement
                                                                    (I)Accession Number: 444214**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Co-chaperoning of chlorophyll and carotenoid biosynthesis by orange family proteins in plant
                                                        

- (Peer Reviewed Journal)Sun, T., Wang, P., Lu, S., Yuan, H., Yang, Y., Fish, T., Thannhauser, T.W., Liu, J., Mazourek, M., Grimm, B., Li, L. 2023. Co-chaperoning of chlorophyll and carotenoid biosynthesis by orange family proteins in plant. Molecular Plant. 16:1048-1065. https://doi.org/10.1016/j.molp.2023.05.006.Carotenoid sequestration protein fibrillin participates in CmOr-regulated B-carotene accumulation in melon
                                                        

- (Peer Reviewed Journal)Zhou, X., Sun, T., Owens, L., Yang, Y., Fish, T., Liu, A., Wrightstone, E., Yuan, H., Chayut, N., Burger, J., Tadmor, Y., Thannhauser, T.W., Guo, W., Cheng, L., Li, L. 2023. Carotenoid sequestration protein fibrillin participates in CmOr-regulated B-carotene accumulation in melon. Plant Physiology. 193:643-660. https://doi.org/10.1093/plphys/kiad312.Profiling plant proteome and transcriptome changes during grapevine fanlead virus infection
                                                        

- (Peer Reviewed Journal)Roy, B., Deblasio, S.L., Yang, Y., Thannhauser, T.W., Heck, M.L., Fuchs, M. 2023. Profiling plant proteome and transcriptome changes during grapevine fanlead virus infection. Journal of Proteome Research. 22(6):1997-2017. https://doi.org/10.1021/acs.jproteome.3c00069?urlappend=%3Fref%3DPDF&jav=VoR&rel=cite-as.The common bean V gene encodes flavonoid 3'5' hydroxylase: a major mutational target for flavonoid diversity in angiosperms
                                                        

- (Peer Reviewed Journal)Mclean, P.E., Lee, R., Howe, K.J., Osborne, C., Grimwood, J., Levy, S., Haugrud, A.P., Plott, C., Robinson, M., Skiba, R.M., Tanha, T., Zamani, M., Thannhauser, T.W., Glahn, R.P., Schmutz, J., Osorno, J., Miklas, P.N. 2022. The common bean V gene encodes flavonoid 3'5' hydroxylase: A major mutational target for flavonoid diversity in angiosperms. Frontiers in Plant Science. 13:869582. https://doi.org/10.3389/fpls.2022.869582.Laser capture of tomato pericarp tissues for microscale carotenoid analysis by supercritical fluid chromatography
                                                        

- (Peer Reviewed Journal)Ramsey, J.S., Fish, T., Thannhauser, T.W., Giovannoni, J.J. 2022. Laser capture of tomato pericarp tissues for microscale carotenoid analysis by supercritical fluid chromatography. Methods in Enzymology. 670:213-233. https://doi.org/10.1016/bs.mie.2022.01.014.Orchestration of chlorophyll and carotenoid biosynthesis by orange family proteins in plant
                                                        

- (Pre-print Publication)Sun, T., Wang, P., Lu, S., Yuan, H., Yang, Y., Fish, T., Thannhauser, T.W., Liu, J., Mazourek, M., Grimm, B., Li, L. 2022. Orchestration of chlorophyll and carotenoid biosynthesis by orange family proteins in plant. bioRxiv. https://doi.org/10.1101/2022.02.08.479616.Host plant adaptation drives changes in Diaphorina citri proteome regulation, proteoform expression and transmission of Candidatus Liberibacter asiaticus, the citrus greening pathogen
                                                        

- (Peer Reviewed Journal)Ramsey, J.S., Ammar, D., Mahoney, J.E., Rivera, K., Johnson, R., Igwe, D.O., Thannhauser, T.W., Maccoss, M.J., Hall, D.G., Heck, M.L. 2022. Host plant adaptation drives changes in Diaphorina citri proteome regulation, proteoform expression and transmission of Candidatus Liberibacter asiaticus, the citrus greening pathogen. Phytopathology. 112:101-115. https://doi.org/10.1094/phyto-06-21-0275-r.A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening
                                                        

- (Peer Reviewed Journal)Shi, Y., Vrebalov, J., Zheng, H., Xu, Y., Yin, X., Liu, W., Liu, Z., Sorensen, I., Su, G., Ma, Q., Evanich, D., Rose, J., Fei, Z., Van Eck, J., Thannhauser, T.W., Chen, K., Giovannoni, J.J. 2021. A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening. Proceedings of the National Academy of Sciences (PNAS). 118(33):e2102486118. https://doi.org/10.1073/pnas.2102486118.Multi-strategy engineering greatly enhances provitamin A carotenoid accumulation and stability in Arabidopsis seeds
                                                        

- (Peer Reviewed Journal)Sun, T., Zhu, Q., Wei, Z., Owens, L.A., Fish, T., Kim, H., Thannhauser, T.W., Cahoon, E.B., Li, L. 2021. Multi-strategy engineering greatly enhances provitamin A carotenoid accumulation and stability in Arabidopsis seeds. aBIOTECH. https://doi.org/10.1007/s42994-021-00046-1.Effect of continuous white light illumination on glucosinolate metabolism during postharvest storage of broccoli
                                                        

- (Peer Reviewed Journal)Casajus, V., Civello, P., Martinez, G., Howe, K.J., Fish, T., Yang, Y., Thannhauser, T.W., Li, L., Lobato, M.G. 2021. Effect of continuous white light illumination on glucosinolate metabolism during postharvest storage of broccoli. LWT - Food Science and Technology. 145:111302. https://doi.org/10.1016/j.lwt.2021.111302.Arabidopsis OR protein regulates plastid preprotein import through interacting with Tic proteins
                                                        

- (Peer Reviewed Journal)Yuan, H., Pawlowski, E., Yang, Y., Sun, T., Thannhauser, T.W., Mazourek, M., Schnell, D., Li, L. 2020. Arabidopsis OR protein regulates plastid preprotein import through interacting with Tic proteins. Journal of Experimental Botany. 2(4):1059-1072. https://doi.org/10.1093/jxb/eraa528.Genotypic variation of flavonols and antioxidant capacity in broccoli
                                                        

- (Peer Reviewed Journal)Duan, Y., Santiago, F., Reis, A., Figueiredo, M., Zhou, S., Thannhauser, T.W., Li, L. 2021. Genotypic variation of flavonols and antioxidant capacity in broccoli. Food Chemistry. 338:127997. https://doi.org/10.1016/j.foodchem.2020.127997.Proteome profile changes during polyhydroxybutyrate intracellular mobilization in gram positive Bacillus cereus tsu1

- (Peer Reviewed Journal)A neighboring aromatic-aromatic amino acid combination governs activity divergence of tomato PSY1 and PSY2
                                                        

- (Peer Reviewed Journal)Cao, H., Luo, H., Yuan, H., Eissa, M.A., Thannhauser, T.W., Welsch, R., Hao, Y., Cheng, L., Li, L. 2020. A neighboring aromatic-aromatic amino acid combination governs activity divergence of tomato PSY1 and PSY2. Plant Physiology. 180(4):1988-2003. https://doi.org/10.1104/pp.19.00384.Multi-omics analysis unravels a segregated metabolic flux network that tunes co-utilization of sugar and aromatic carbons in Pseudomonas putida
                                                        

- (Peer Reviewed Journal)Kykurugya, M.M., Mendonca, C.M., Solhtalab, M., Wilkines, R.A., Thannhauser, T.W., Aristilde, L. 2019. Multi-omics analysis unravels a segregated metabolic flux network that tunes co-utilization of sugar and aromatic carbons in Pseudomonas putida. International Journal of Polymer Science. 1-16. https://doi.org/10.1074/jbc.RA119.007885.The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
                                                        

- (Peer Reviewed Journal)Gao, L., Gonda, I., Sun, H., Ma, Q., Bao, K., Tieman, D., Burzynski-Chang, E., Fish, T., Stromberg, K., Sacks, G., Thannhauser, T.W., Foolad, M., Jose Diez, M., Blanca, J., Canizares, J., Xu, Y., Van Der Knaap, E., Huang, S., Klee, H., Giovannoni, J.J., Fei, Z. 2019. The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Nature Genetics. 51:1044-1051. https://doi.org/10.1038/s41588-019-0410-2.Proteome profile and genome refinement of the tomato-pathogenic bacterium Clavibacter michiganensis subsp. michiganensis
                                                        

- (Peer Reviewed Journal)Peritore-Galve, F., Schneider, D.J., Yang, Y., Thannhauser, T.W., Smart, C.D., Stodghill, P. 2019. Proteome profile and genome refinement of the tomato-pathogenic bacterium Clavibacter michiganensis subsp. michiganensis. Proteomics. https://doi.org/10.1002/pmic.201800224.Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitive Trait Loci Detection
                                                        

- (Peer Reviewed Journal)Gonda, I., Ashrafi, H., Lyon, S., Strickler, S., Hulse-Kemp, A.M., Thannhauser, T.W., Mueller, L., Fei, Z., Foolad, M., Giovannoni, J.J., Ma, Q., Sun, H., Stoffel, K., Powell, A., Futrell, S., Van Deynze, A. 2018. A GBS-based high-density genetic map of a tomato RIL population facilitating high resolution QTL mapping and candidate gene identification. The Plant Genome. 12:1. https://doi.org/10.3835/plantgenome2018.02.0010.Bacteria associated with Russian Wheat Aphid (Diuraphis noxia) enhance aphid virulence to wheat
                                                        

- (Peer Reviewed Journal)Luna, E., Van Eck, L., Campillo, T., Weinroth, M., Metcalf, J., Perez-Quintero, A.L., Botha, A., Thannhauser, T.W., Pappin, D., Tissarat, N.A., Lapitan, N.L., Argueso, C.T., Ode, P.J., Heck, M.L., Leach, J.E. 2018. Bacteria associated with Russian Wheat Aphid (Diuraphis noxia) enhance aphid virulence to wheat. Phytobiomes Journal. https://doi.org/10.1094/PBIOMES-06-18-0027-R.Effects of selenium supplementation on glucosinolate biosynthesis in broccoli

- (Peer Reviewed Journal)Tian, M., Yang, Y., Avila, F., Fish, T., Yuan, H., Hui, M., Pan, S., Thannhauser, T.W., Li, L. 2018. Effects of selenium supplementation on glucosinolate biosynthesis in broccoli. Journal of Agricultural and Food Chemistry. 66:8036-8044.Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato
                                                        

- (Peer Reviewed Journal)Yazdani, M., Sun, Z., Yuan, H., Zeng, S., Thannhauser, T.W., Vrebalov, J., Ma, Q., Xu, Y., Fei, Z., Van Eck, J., Tian, S., Tadmor, Y., Giovannoni, J.J., Li, L. 2018. Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.12945.Association of proteomics changes with Al-sensitive root zones in switchgrass
                                                        

- (Peer Reviewed Journal)Rangu, M., Ye, Z., Bhatti, S., Zhou, S., Fish, T., Yang, Y., Thannhauser, T.W. 2018. Association of proteomics changes with Al-sensitive root zones in switchgrass. Proteomes. 6(2). https://doi.org/10.3390/proteomes6020015.High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening

- (Peer Reviewed Journal)Shinozaki, Y., Nicolas, P., Fernandez-Pozo, N., Evanich, D., Shi, Y., Thannhauser, T.W., Mueller, L., Fei, Z., Giovannoni, J.J., Rose, J. 2018. High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. Nature Communications. 9:364.Clp protease and OR directly control the proteostasis of phytoene synthase, the crucial enzyme for carotenoid biosynthesis in Arabidopsis

- (Peer Reviewed Journal)Welsh, R., Zhou, X., Yuan, H., Alvarez, D., Sun, T., Schlossarek, D., Yang, Y., Shen, G., Zhang, H., Rodriguez-Concepcion, M., Thannhauser, T.W., Li, L. 2018. Clp protease and OR directly control the proteostasis of phytoene synthase, the crucial enzyme for carotenoid biosynthesis in Arabidopsis. Molecular Plant. 11:149-162.Selenium-induced toxicity is counteracted by sulfur in broccoli (Brassica oleracea L. var. italic)

- (Peer Reviewed Journal)Tian, M., Hui, M., Thannhauser, T.W., Pan, S., Li, L. 2017. Selenium-induced toxicity is counteracted by sulfur in broccoli (Brassica oleracea L. var. italic). Frontiers in Plant Science. 8:1425.Genome structure of bacillus cereus tsu1 and genes involved in cellulose degradation and poly-3-hydroxybutyrate synthesis
                                                        

- (Peer Reviewed Journal)Li, H., Zhou, S., Johnson, T., Vercruysse, K., Lizhi, O., Ranganathan, P., Phambu, N., Ropelewski, A., Thannhauser, T.W. 2017. Genome structure of bacillus cereus tsu1 and genes involved in cellulose degradation and poly-3-hydroxybutyrate synthesis. International Journal of Polymer Science. https://doi.org/10.1155/2017/6192924.Evaluation of a bead-free immunoprecipitation technique coupled with tandem mass spectrometry for identification of plant-virus protein interactions
                                                        

- (Peer Reviewed Journal)DeBlasio, S.L., Bereman, M.S., Mahoney, J., Thannhauser, T.W., Gray, S.M., MacCoss, M.J., Heck, M.L. 2017. Evaluation of a bead-free immunoprecipitation technique coupled with tandem mass spectrometry for identification of plant-virus protein interactions. Journal of Biomolecular Techniques. 28(3):111-121. https://doi.org/10.7171/jbt.17-2803-002.Proteins in phytohormone signaling pathways for abiotic stress in plants

- (Book / Chapter)Sangireddy, S., Ye, Z., Bhatti, S., Pei, X., Barozai, M., Thannhauser, T.W., Zhou, S. 2017. Proteins in phytohormone signaling pathways for abiotic stress in plants. In: Pandey, P.K., editor. Mechanism of Plant Hormone Signaling Under Stress. Hoboken, New Jersey:John Wiley & Sons, Inc. p.187-198.Effects of Al3+ and La3+ trivalent metal ions on tomato fruit proteomes

- (Peer Reviewed Journal)Sangireddy, S., Okekeogbu, I., Ye, Z., Zhou, S., Howe, K.J., Fish, T., Thannhauser, T.W. 2017. Effects of Al3+ and La3+ trivalent metal ions on tomato fruit proteomes. Proteomes. 5(1):7. doi:10.3390/proteomoes5010007.Quantitative iTRAQ proteomics revealed possible roles for antioxidant proteins in sorghum aluminum tolerance
                                                        

- (Peer Reviewed Journal)Zhou, D., Yang, Y., Zhang, J., Jiang, F., Jia, X., Craft, E.J., Thannhauser, T.W., Kochian, L.V., Liu, J. 2017. Quantitative iTRAQ proteomics revealed possible roles for antioxidant proteins in sorghum aluminum tolerance. Frontiers in Plant Science. 7:2043. https://doi.org/10.3389/fpls.2016.02043.Selenium promotes sulfur accumulation and plant growth in wheat (Triticum aestivum)

- (Peer Reviewed Journal)Boldrin, P.F., Figueiredo, M., Yang, Y., Luo, H., Giri, S., Hart, J.J., Faquin, V., Guilherme, L., Thannhauser, T.W., Li, L. 2016. Selenium promotes sulfur accumulation and plant growth in wheat (Triticum aestivum). Physiologia Plantarum. 158:80-91.Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor

- (Peer Reviewed Journal)Martin, L., Scherwood, R., Nicklay, J., Yang, Y., Muratore, S., Anderson, E., Thannhauser, T.W., Rose, J., Zhang, S. 2016. Application of wide selected-ion monitoring data-independent acquisition to identify tomato fruit proteins regulated by the CUTIN DEFICIENT2 transcription factor. Proteomics. 16:2081-2094.Proteome modification in tomato plants upon long-term aluminum treatment

- (Peer Reviewed Journal)Zhou, S., Okekeogbu, I., Sangireddy, S., Yi, Z., Hui, L., Bhatti, S., Hui, D., Yang, Y., Howe, K.J., Fish, T., Thannhauser, T.W. 2016. Proteome modification in tomato plants upon long-term aluminum treatment. Journal of Proteome Research. 15:1670-1684.Plastid ribosomal protein S5 plays a critical role in photosynthesis, plant development, and cold stress tolerance in arabidopsis

- (Peer Reviewed Journal)Zhang, J., Yuan, H., Yang, Y., Fish, T., Lyi, S., Thannhauser, T.W., Zhang, L., Li, L. 2016. Plastid ribosomal protein S5 plays a critical role in photosynthesis, plant development, and cold stress tolerance in arabidopsis. Journal of Experimental Botany. doi: 10.1093/jxb/erw106.A single amino acid substitution in an ORANGE protein promotes carotenoid overaccumulation in arabidopsis

- (Peer Reviewed Journal)Yuan, H., Owsiang, K., Sheeja, T., Zhou, X., Rodriguez, C., Li, Y., Welsch, R., Chayut, N., Yang, Y., Thannhauser, T.W., Pathasarathy, M.V., Xu, Q., Deng, X., Fei, Z., Schaffer, A., Katzir, N., Burger, J., Tadmor, Y., Li, L. 2014. A single amino acid substitution in an ORANGE protein promotes carotenoid overaccumulation in arabidopsis. Plant Physiology. 169(1):421-431.Arabidopsis OR proteins are the major post-transcriptional regulators of phytoene synthase in mediating carotenoid biosynthesis

- (Peer Reviewed Journal)Zhou, X., Welsch, R., Yang, Y., Riediger, M., Alvarez, D., Yuan, H., Fish, T., Liu, J., Thannhauser, T.W., Li, L. 2015. Arabidopsis OR proteins are the major post-transcriptional regulators of phytoene synthase in mediating carotenoid biosynthesis. Proceedings of the National Academy of Sciences. 112:3558-3563.Impact of selenium supply on se-methylselenocysteine and glucosinolates accumulation in selenium-biofortified brassica sprouts

- (Peer Reviewed Journal)Avila, F., Yang, Y., Faquin, V., Ramos, S., Guilherme, L., Thannhauser, T.W., Li, L. 2014. Impact of selenium supply on se-methylselenocysteine and glucosinolates accumulation in selenium-biofortified brassica sprouts. Food Chemistry. 165:578-586.Evidence for the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae)

- (Peer Reviewed Journal)Pinheiro, P., Bereman, M., Burd, J., Pals, M.A., Armstrong, J.S., Howe, K.J., Thannhauser, T.W., Maccoss, M., Gray, S.M., Cilia, M. 2014. Evidence for the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae). Journal of Proteome Research. 13(4):2094–2108.Effect of aluminum treatment on proteomes of radicles of seeds derived from Al-treated tomato plants

- (Peer Reviewed Journal)Okekeogbu, I., Ye, Z., Sangireddy, S.R., Li, H., Bhatti, S., Zhou, S., Howe, K.J., Fish, T., Yang, Y., Thannhauser, T.W. 2014. Effect of aluminum treatment on proteomes of radicles of seeds derived from Al-treated tomato plants. Proteomes. 2(2):169-190.A comparative study of lectin affinity based plant n-glycoproteome profiling using tomato fruit as a model

- (Peer Reviewed Journal)Ruiz-May, E., Hucko, S., Howe, K.J., Zhang, S., Sherwood, R.W., Thannhauser, T.W., Rose, J.K. 2014. A comparative study of lectin affinity based plant n-glycoproteome profiling using tomato fruit as a model. Proteomes. 13:566-579.Assessing the anticancer compounds Se-methylselenocysteine and glucosinolates in Se-biofortified broccoli (brassica oleracea L. var. italica) sprouts and florets

- (Peer Reviewed Journal)Avila, F., Faquin, V., Yang, Y., Ramos, S., Guilherme, L., Thannhauser, T.W., Li, L. 2013. Assessing the anticancer compounds Se-methylselenocysteine and glucosinolates in Se-biofortified broccoli (brassica oleracea L. var. italica) sprouts and florets. Journal of Agricultural and Food Chemistry. 61:6216-6223.The identification of protein biomarkers distinguishing virus transmission competent and refractive insect populations by coupling genetics with quantitative intact proteomics

- (Proceedings)A workflow for large-scale empirical identification of cell wall N-linked glycoproteins of tomato (Solanum lycopersicum) fruit by tandem mass spectrometry

- (Peer Reviewed Journal)Thannhauser, T.W., Shen, M., Sherwood, R., Howe, K.J., Fish, T., Yang, Y., Chen, W., Zhang, S. 2013. A workflow for large-scale empirical identification of cell wall N-linked glycoproteins of tomato (Solanum lycopersicum) fruit by tandem mass spectrometry. Electrophoresis. DOI: 10.1002/elps.201200656.Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development
                                                        

- (Peer Reviewed Journal)Wang, Y., Yang, Y., Fei, Z., Yuan, H., Fish, T., Thannhauser, T.W., Mazourek, M., Kochian, L.V., Wang, X., Li, L. 2013. Proteomic analysis of chromoplasts from six crop species reveals insights into chromoplast function and development. Journal of Experimental Botany. 64(4):949-961.The tomato genome sequence provides insight into fleshy fruit evolution

- (Peer Reviewed Journal)Ware, D., Thannhauser, T.W., White, R.A., Giovannoni, J.J. 2012. The tomato genome sequence provides insight into fleshy fruit evolution. Nature. 485:635-641. DOI: 10.1038/nature11119.Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis)

- (Peer Reviewed Journal)Zhou, X., Fei, Z., Thannhauser, T.W., Li, L. 2012. Transcriptome analysis of ectopic chloroplast development in green curd cauliflower (Brassica oleracea L. var. botrytis). Biomed Central (BMC) Plant Biology. 11:169.The Or gene enhances carotenoid accumulation and stability during post-harvest storage of potato tubers

- (Peer Reviewed Journal)Li, L., Yang, Y., Xu, Q., Owsiany, K., Welsch, R., Chitchumroonchokchai, C., Lu, S., Van Eck, J., Deng, X., Failla, M., Thannhauser, T.W. 2012. The Or gene enhances carotenoid accumulation and stability during post-harvest storage of potato tubers. Molecular Plant. 5:339-352.Evaluation of different multidimensional LC-MS/MS pipelines for iTRAQ-based proteomic analysis of potato tubers in response to cold storage

- (Peer Reviewed Journal)Yang, Y., Qiang, X., Owsiany, K., Zhang, S., Thannhauser, T.W., Li, L. 2011. Evaluation of different multidimensional LC-MS/MS pipelines for iTRAQ-based proteomic analysis of potato tubers in response to cold storage. Journal of Proteome Research. 10(10):4349-4886.Biomarker discovery from the top down: protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE

- (Peer Reviewed Journal)Cilia, M., Howe, K.J., Fish, T., Smith, D., Mahoney, J., Tamborindeguy, C., Burd, J.D., Thannhauser, T.W., Gray, S.M. 2011. Biomarker discovery from the top down: protein biomarkers for efficient virus transmission by insects (Homoptera: Aphididae) discovered by coupling genetics and 2-D DIGE. Proteomics. 11:2440-2458.Identification of salt-induced changes in leaf and root proteomes of the wild tomato solanum chilense

- (Peer Reviewed Journal)Zhou, S., Sauve, R., Liu, Z., Reddy, S., Bhatti, S., Hucko, S., Fish, T., Thannhauser, T.W. 2011. Identification of salt-induced changes in leaf and root proteomes of the wild tomato solanum chilense. Journal of the American Society for Horticultural Science. 136:288-302.Impact of whole genome protein analysis on gene discovery of disease models

- (Book / Chapter)Zhang, S., Yang, Y., Thannhauser, T.W. 2011. Impact of whole genome protein analysis on gene discovery of disease models. In: Gu, W. editor. Gene Discovery for Disease Models. 1st edition. Hoboken, NJ:Wiley-VCH. p. 471-530.Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein isoform expression to polerovirus transmission

- (Peer Reviewed Journal)Cilia, M., Tamborindeguy, C., Fish, T., Howe, K.J., Thannhauser, T.W., Gray, S.M. 2011. Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein isoform expression to polerovirus transmission. Journal of Virology. 85(5):2148-2166.Tangible benefits of the pea aphid genome sequencing in proteomics research: enhancements in protein identification, data incorporation, and evaluation criteria

- (Peer Reviewed Journal)Cilia, M., Thannhauser, T.W., Gray, S.M. 2010. Tangible benefits of the pea aphid genome sequencing in proteomics research: enhancements in protein identification, data incorporation, and evaluation criteria. Journal of Insect Physiology. Available: http://www.ncbi.nlm.nih.gov/pubmed/21070785.The identification of protein biomarkers distinguishing virus transmission competent and refractive insect populations by coupling genetics with quantitative intact proteomics

- (Proceedings)Cilia, M., Tamborindeguy, C., Thannhauser, T.W., Gray, S.M. 2010. The identification of protein biomarkers distinguishing virus transmission competent and refractive insect populations by coupling genetics with quantitative intact proteomics. Journal of American Society for Mass Spectrometry. 58:42.The proteomics toolbox for agricultural research: precision biomarker discovery using genetics

- (Proceedings)Cilia, M., Tamborindeguy, C., Thannhauser, T.W., Gray, S.M. 2010. The proteomics toolbox for agricultural research: precision biomarker discovery using genetics. Journal of Agricultural and Urban Entomology. 27:20.Combined use of 2-D reverse phase chromatography & data independent mass spectrometry simultaneously characterizing proteomes of Schizaphis graminum & its obligate endosymbiont Buchnera aphidicola, from whole aphid extracts

- (Abstract Only)Mclaughlin, M., Cilia, M., Howe, K.J., Gray, S.M., Thannhauser, T.W. 2010. Combined use of 2-D reverse phase chromatography & data independent mass spectrometry simultaneously characterizing proteomes of Schizaphis graminum & its obligate endosymbiont Buchnera aphidicola, from whole aphid extracts. Journal of Biomolecular Techniques. 21(3):S58.Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity

- (Peer Reviewed Journal)Filiatrault, M.J., Stodghill, P., Bronstein, P., Moll, S., Lindeberg, M., Grills, G., Schweitzer, P., Wang, W., Schroth, G., Luo, S., Khrebtukova, I., Thannhauser, T.W., Yang, Y., Butcher, B.G., Cartinhour, S.W., Schneider, D.J. 2010. Transcriptome analysis of Pseudomonas syringae identifies new genes, ncRNAs, and antisense activity. Journal of Bacteriology. 192(9):2359-2372.Involvement of a broccoli COQ5 methyltransferase in the production of volatile selenium compounds

- (Peer Reviewed Journal)Li, L., Zhou, X., Yuan, Y., Yang, Y., Rutzke, M., Thannhauser, T.W., Kochian, L.V. 2009. Involvement of a broccoli COQ5 methyltransferase in the production of volatile selenium compounds. Plant Physiology. 151:528-540.Proteomic analysis of B-aminobutyric acid priming and aba-induction of drought resistance in crabapple (Malus pumila): effect on general metabolism, the phenylpropanoid pathway and cell wall enzymes

- (Peer Reviewed Journal)Macarisin, D., Wisniewski, M.E., Bassett, C.L., Thannhauser, T.W. 2009. Proteomic analysis of B-aminobutyric acid priming and aba-induction of drought resistance in crabapple (Malus pumila): effect on general metabolism, the phenylpropanoid pathway and cell wall enzymes. Plant Cell and Environment. 32: 1612-1631.Aluminum induced proteome changes in tomato cotyledons

- (Peer Reviewed Journal)Zhou, S., Sauve, R., Thannhauser, T.W. 2009. Aluminum induced proteome changes in tomato cotyledons. Plant Signaling and Behavior. 4(8):769-772.A broccoli COQ5 methyltransferase involved in ubiquinone biosynthesis mediates selenium volatilization

- (Abstract Only)Li, L., Zhou, X., Yang, Y., Thannhauser, T.W., Kochian, L.V. 2009. A broccoli COQ5 methyltransferase involved in ubiquinone biosynthesis mediates selenium volatilization. Meeting Abstract.Protein N- and C-Termini Identification Using Mass Spectrometry and Isotopic Labeling

- (Peer Reviewed Journal)Xiang, B., Yang, X., Thannhauser, T.W. 2009. Protein N- and C-Termini Identification Using Mass Spectrometry and Isotopic Labeling. Journal of Rapid Communications in Mass Spectroscopy. 23:2102-2106.A Comparison of Protein Extraction Methods Suitable for Gel-Based Proteomics Studies of Aphid Proteins

- (Peer Reviewed Journal)Cilia, M., Fish, T., Yang, X., Mclaughlin, M., Thannhauser, T.W., Gray, S.M. 2009. A Comparison of Protein Extraction Methods Suitable for Gel-Based Proteomics Studies of Aphid Proteins. Journal of Biomolecular Techniques. 20(4):201-215.Salt Induced and Salt Suppressed Proteins in Tomato Leaves

- (Peer Reviewed Journal)Suping, Z., Zhou, S., Fish, T., Thannhauser, T.W. 2009. Salt Induced and Salt Suppressed Proteins in Tomato Leaves. Journal of the American Society for Horticultural Science. 134(2):289-294.Proteome changes induced by aluminum stress in tomato roots

- (Peer Reviewed Journal)Zhou, S., Sauve, R., Thannhauser, T.W. 2009. Proteome changes induced by aluminum stress in tomato roots. Journal of Experimental Botany. 60:1849-1857.Drosophila ABC Transporter DmHMT-1 Confers Tolerance to Cadmium.

- (Peer Reviewed Journal)Sooksa-Nguan, T., Yakubov, B., Kozlovskyy, V.I., Barcume, C.M., Thannhauser, T.W., Rutzke, M.A., Hart, J.J., Kochian, L.V., Vatamaniuk, O.K. 2009. Drosophila ABC Transporter DmHMT-1 Confers Tolerance to Cadmium. Journal of Biological Chemistry. 284:354-362.Effects of Ascorbic Acid, Phytic Acid and Tannic Acid on Iron Bioavailability from Reconstituted Ferritin Measured by an In Vitro Digestion/Caco-2 Cell Model

- (Peer Reviewed Journal)Jin, F., Frohman, C., Glahn, R.P., Thannhauser, T.W., Welch, R.M. 2009. Effects of Ascorbic Acid, Phytic Acid and Tannic Acid on Iron Bioavailability from Reconstituted Ferritin Measured by an In Vitro Digestion/Caco-2 Cell Model. British Journal of Nutrition. 101(7):312-316.An evaluation of the basis and consequences of a stay-green mutation in the navel negra (nan) citrus mutant using transcriptomic and proteomic profiling and metabolite analysis

- (Peer Reviewed Journal)Alos, E., Roca, M., Iglesias, D., Minguez-Mosquera, M., Borges-Damasceno, C., Thannhauser, T.W., Campbell-Rose, J., Talon, M., Cercos, M. 2008. An evaluation of the basis and consequences of a stay-green mutation in the navel negra (nan) citrus mutant using transcriptomic and proteomic profiling and metabolite analysis. Journal of Plant Physiology. 147:1300-1315.ROLE OF COPPER,ZINC-SUPEROXIDE DISMUTASE IN CATALYZING NITROTYROSINE FORMATION IN MURINE LIVER

- (Peer Reviewed Journal)Zhu, J., Zhang, X., Roneker, C.A., Mcclung, J.P., Zhang, S., Thannhauser, T.W., Ripoll, D.R., Sun, Q., Lei, X. 2008. ROLE OF COPPER,ZINC-SUPEROXIDE DISMUTASE IN CATALYZING NITROTYROSINE FORMATION IN MURINE LIVER. Journal of Free Radical Biology and Medicine. 45:611-618.Proteomic analysis of drought resistance in crabapple seedlings primed by the xenobiotic Beta-aminobutyric acid

- (Abstract Only)Macarisin, D., Wisniewski, M.E., Bassett, C.L., Thannhauser, T.W. 2008. Proteomic analysis of drought resistance in crabapple seedlings primed by the xenobiotic Beta-aminobutyric acid. Mid Atlantic Plant Molecular Biology Society Conference. Book of Abstracts Pg. 15-16.PROTEOMIC ANALYSIS OF B-AMINOBUTYRIC ACID-PRIMED DROUGHT RESISTANCE IN CRABAPPLE SEEDLINGS

- (Abstract Only)Macarisin, D., Wisniewski, M.E., Bassett, C.L., Thannhauser, T.W. 2008. Proteomic analysis of b-aminobutyric acid-primed drought resistance in crabapple seedlings. Bio-Technology Fruit Symposium. Acta Hort. Book of Abstracts.  16:95.Characterization of Extracellular Proteins in Tomato Fruit using Lectin Affinity Chromatography and LC-MALDI-MS/MS analysis

- (Abstract Only)Hucko, S., Catala, C., Howe, K.J., Rose, J., Thannhauser, T.W. 2008. Characterization of Extracellular Proteins in Tomato Fruit using Lectin Affinity Chromatography and LC-MALDI-MS/MS analysis. Journal of Biomolecular Techniques. Vol. 19:57Getting something for nothing: Regeneration of peptide signals from apparently exhausted MALDI samples by “waterboarding"

- (Abstract Only)Yang, X., Thannhauser, T.W. 2008. Getting something for nothing: Regeneration of peptide signals from apparently exhausted MALDI samples by “waterboarding". Journal of Biomolecular Techniques.  Vol. 19:52.Reproducibility of an Integrated Quantitation Method Coupling 2D GeLC-MS/MS with the emPAI for Comparative Proteomics

- (Abstract Only)Yang, Y., Zhang, S., Thannhauser, T.W. 2008. Reproducibility of an Integrated Quantitation Method Coupling 2D GeLC-MS/MS with the emPAI for Comparative Proteomics.  Journal of Biomolecular Techniques. Vol. 19:52.Phytoene desaturase is present in a large protein complex in the plastid membrane

- (Peer Reviewed Journal)Lopez, A., Yang, Y., Thannhauser, T.W., Li, L. 2008. Phytoene desaturase is present in a large protein complex in the plastid membrane. Physiologia Plantarum. 133:190-198.Coupling genetics and proteomics to identify aphid proteins associated with vector-specific transmission of Polerovirus (Luteoviridae)

- (Peer Reviewed Journal)Yang, X., Thannhauser, T.W., Burrows, M.E., Cox Foster, D., Gildow, F., Gray, S.M. 2008. Coupling genetics and proteomics to identify aphid proteins associated with vector-specific transmission of Polerovirus (Luteoviridae). Journal of Virology. 82:291-299.A Comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based Protein Identification and iTRAQ-based Shotgun Quantitative Proteomics

- (Peer Reviewed Journal)Yang, Y., Howe, K.J., Zhang, S., Wilson, D., Moser, F., Irwin, D., Thannhauser, T.W. 2007. A comparison of nlc-esi-ms/ms and nlc-maldi-ms/ms for gelc-based protein identification and itraq-based shotgun quantitative proteomics. Journal of Biomolecular Techniques. 18:226-237.Proteomic and metabolic analyses of early berry development in Vitis spp. including the period of ontogenic gain of resistance

- (Abstract Only)The call of the wild: using wild germplasm to uncover the basis for ontogenic resistance in grapevine (Vitis)

- (Abstract Only)On slide chemical modification as a means to improve confidence in protein identifications made by peptide mass finger prints

- (Abstract Only)Yang, X., Thannhauser, T.W. 2007. On slide chemical modification as a means to improve confidence in protein identifications made by peptide mass finger prints [abstract]. Journal of Biomolecular Techniques. 18:67.A Comparison of nLC-ESI-MS/MS and nLC-MALDI-MS/MS for GeLC-based Protein Identification and iTRAQ-based Shotgun Quantitative Proteomics

- (Abstract Only)Yang, Y., Howe, K.J., Zhang, S., Thannhauser, T.W. 2007. A comparison of nlc-esi-ms/ms and nlc-maldi-ms/ms for gelc-based protein identification and itraq-based shotgun quantitative proteomics [abstract]. Journal of Biomolecular Techniques. 18:66.Joint linkage-association analysis of aluminum tolerance in maize

- (Abstract Only)Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Kirst, M., Krill, A., Lyi, M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2007. Joint linkage-association analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 55.Development of an integrated approach for evaluation of 2-D gel image analysis: Impact of multiple proteins in single spots on comparative proteomics in conventional 2-D gel/MALDI workflow

- (Peer Reviewed Journal)Yang, Y., Thannhauser, T.W., Li, L., Zhang, S. 2007. Development of an integrated approach for evaluation of 2-D gel image analysis: Impact of multiple proteins in single spots on comparative proteomics in conventional 2-D gel/MALDI workflow. Electrophoresis. 28:2080-2094.HIGH THROUGHPUT PROTEIN IDENTIFICATION USING 2-DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS AND ROBOTIC SPOT PICKING FOR ALUMINUM TOLERANCE-RELATED MAIZE ROOT TIP PROTEINS

- (Abstract Only)Thannhauser, T.W., Yang, Y., Zhang, S., Sherwood, R., Isaac, I. 2006. High throughput protein identification using 2-dimensional difference gel electrophoresis and robotic spot picking for aluminum tolerance-related maize root tip proteins. Journal of American Society for Mass Spectrometry. 17:46.ITRAQ BASED PROTEIN QUANTITATIVE ANALYSIS OF THE CELL WALL PROTEOME OF PATHOGEN-INFECTED TOMATO LEAVES

- (Abstract Only)Thannhauser, T.W., Yang, Y., Zhang, S., Damasceno, C., Sherwood, R., Rose, J. 2006. Itraq based protein quantitative analysis of the cell wall proteome of pathogen-infected tomato leaves. Journal of Biomolecular Techniques. 17:40.COMPARISON OF PROTEIN IDENTIFICATION BY MALDI-TOF/TOF AND LC ELECTROSPRAY IONIZATION TANDEM MS FOR 2D GEL SEPARATED CAULIFLOWER SAMPLES

- (Abstract Only)Thannhauser, T.W., Yang, Y., Zhang, S. 2006. Comparison of protein identification by maldi-tof/tof and lc electrospray ionization tandem ms for 2d gel separated cauliflower samples. Journal of Biomolecular Techniques. 17:48.PROTEINS IN THE APHID SCHIZAPHIS GRAMINUM ASSOCIATED WITH VECTORING LUTEOVIRUSES

- (Abstract Only)Thannhauser, T.W., Yang, X., Gray, S.M., Burrows, M.E., Cox-Foster, D., Gildow, F. 2006. Proteins in the aphid schizaphis graminum associated with vectoring luteoviruses. Phytopathology. 96:S127.INTERDISCIPLINARY ANALYSIS OF ALUMINUM TOLERANCE IN MAIZE

- (Abstract Only)Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Isaacson, T., Kirst, M., Krill, A., Lyi, S.M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2006. Interdisciplinary analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 226.OR, A PLASTID PROTEIN, ACCOUNTS FOR THE HIGH LEVEL ACCUMULATION OF BETA-CAROTENE IN CAULIFLOWER

- (Abstract Only)Lu, S., O'Halloran, D.M., Cosman, K., Yang, Y., Xiang, B., Thannhauser, T.W., Li, L. 2005. Or, a plastid protein, accounts for the high level accumulation of beta-carotene in cauliflower. American Society of Plant Biologists Annual Meeting. p. 606.DIFFERENTIAL PROTEIN EXPRESSION IN BRASSICA OLERACIA: CHANGES ASSOCIATED WITH THE ABILITY TO ACCUMULATE HIGH CONCENTRATIONS OF B-CAROTENE

- (Abstract Only)Thannhauser, T.W., Yang, Y., Xiang, B., Lu, S., Li, L. 2005. Differential protein expression in brassica oleracia: changes associated with the ability to accumulate high concentrations of b-carotene [abstract]. Journal of Biomolecular Techniques.  16:60.


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