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 Sugarcane Research: Houma, LA
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ARS Home Southeast Area Houma, Louisiana Sugarcane Research People & Locations







Yong-Bao  Pan

                                                                (PhD)
                        Sugarcane Research

                        




                        
                        Research Geneticist (Plants)
                        Phone: (985) 853-3165
                         ext. 165
                        
                        Fax: (985) 868-8369(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            ProjectsNew Crop Production and Protection Practices to Increase Sugarcane Ratoon Longevity and Maximize Economic Sustainability
                                                    In-House Appropriated
                                                                    (D)Accession Number: 437753Development of Improved Sugarcane Varieties Adapted to Temperate Climates
                                                    In-House Appropriated
                                                                    (D)Accession Number: 445525Three-way (LSUAC, ASCL, ARS) Sugarcane Breeding and Variety Development Agreement
                                                    Non-Funded Cooperative Agreement
                                                                    (N)Accession Number: 441255Genetic Analysis and Trait-Specific Molecular Marker Development
                                                    Non-Assistance Cooperative Agreement
                                                                    (S)Accession Number: 440501Improving Sugarcane Production Efficiency (ASCL)
                                                    Trust Fund Cooperative Agreement
                                                                    (T)Accession Number: 438359**Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Molecular Dissection of the 5S Ribosomal RNA-Intergenic Transcribed Spacers in Saccharum spp. and Tripidium spp.
                                                        

- (Peer Reviewed Journal)Pan, Y., Todd, J.R., Lomax, L.E., White Jr, P.M., Simpson, S.A., Scheffler, B.E. 2023. Molecular Dissection of the 5S Ribosomal RNA-Intergenic Transcribed Spacers in Saccharum spp. and Tripidium spp.. Agronomy Journal. https://doi.org/10.3390/agronomy13112728.A genome-wide association study and genomic prediction for Phakopsora pachyrhizi resistance in soybean
                                                        

- (Peer Reviewed Journal)Xiong, H., Chen, Y., Pan, Y.-B., Shi, A., Wang, J. 2023. A genome-wide association study and genomic prediction for Phakopsora pachyrhizi resistance in soybean. Frontiers in Plant Science. 14(1179357):1-12. https://doi.org/10.3389/fpls.2023.1179357.A genome-wide association study and genomic prediction for fiber and sucrose contents in a mapping population of LCP 85-384 sugarcane
                                                        

- (Peer Reviewed Journal)Xiong, H., Chen, Y.-B, Pan, Y., Shi, A. 2023. A genome-wide association study and genomic prediction for fiber and sucrose contents in a mapping population of LCP 85-384 sugarcane. Plants. 12(5):1041. https://doi.org/10.3390/plants12051041.Identification of QTLs and critical genes related to sugarcane mosaic disease resistance
                                                        

- (Peer Reviewed Journal)Lu, G., Wang, Z., Pan, Y.-B, Wu, Q., Cheng, W., Xu, F., Dai, S., Li, B., Que, Y., Xu, L. 2023. Identification of QTLs and critical genes related to sugarcane mosaic disease resistance. Frontiers in Plant Science. 14:1107314. https://doi.org/10.3389/fpls.2023.1107314.Genome-wide characterization of sugarcane catalase gene family identifies a ScCAT1 gene associated disease resistance
                                                        

- (Peer Reviewed Journal)Wu, Q., Chen, Y., Zou, W., Pan, Y.-B, Lin, P., Xu, L., Grisham, M.P., Ding, Q., Su, Y., Que, Y. 2023. Genome-wide characterization of sugarcane catalase gene family identifies a ScCAT1 gene associated disease resistance. International Journal of Biological Macromolecules. 232:123398. https://doi.org/10.1016/j.ijbiomac.2023.123398.Genetic identification of SNP markers and candidate genes associated with sugarcane smut resistance using BSR-Seq
                                                        

- (Peer Reviewed Journal)Wu, Q., Su, Y., Pan, Y.-B., Xu, F., Zou, W., Que, B., Lin, P., Sun, T., Grisham, M.P., Xu, L., Que, Y. 2022. Genetic identification of SNP markers and candidate genes associated with sugarcane smut resistance using BSR-Seq. Frontiers in Plant Science. 13:1035266. https://doi.org/10.3389/fpls.2022.1035266.WGCNA identifies a comprehensive and dynamic gene co-expression network that associates with smut resistance in sugarcane
                                                        

- (Peer Reviewed Journal)Wu, Q., Pan, Y.-B., Su, Y., Zou, W., Xu, F., Yang, S., Grisham, M.P., Sun, T., Xu, L., Que, Y. 2022. WGCNA identifies a comprehensive and dynamic gene co-expression network that associates with smut resistance in sugarcane. International Journal of Molecular Sciences. 23:1-23. https://doi.org/10.3390/ijms231810770.Long non-coding RNAs: new players in plants
                                                        

- (Peer Reviewed Journal)Zhao, Z., Zang, S., Zou, W., Pan, Y.-B., Yao, W., You, C., Que, Y. 2022. Long non-coding RNAs: new players in plants. International Journal of Molecular Sciences. 12(9301):1-18. https://doi.org/10.3390/ijms23169301.A genomic wide association study of yield-related traits in sugarcane

- (Abstract Only)Phiri, T.M., Bhattarai, G., Shi, A., Pan, Y.-B. 2022. A genomic wide association study of yield-related traits in sugarcane [abstract]. 2022 ASHS annual conference July 30–August 3, Chicago, IL. Proceedings American Society of Horticultural Sciences. Article 37572. https://ashs.confex.com/ashs/2022/meetingapp.cgi/Paper/37572.A genome-wide association study and genomic prediction for fiber and sucrose contents in sugarcane

- (Abstract Only)Xiong, H., Chen, Y., Shi, A., Pan, Y.-B. 2022. A genome-wide association study and genomic prediction for fiber and sucrose contents in sugarcane [abstract]. 2022 ASHS annual conference July 30–August 3, Chicago, IL. Proceedings American Society of Horticultural Sciences. Article 37890. https://ashs.confex.com/ashs/2022/meetingapp.cgi/Paper/37890.Population structure and genetic diversity analysis in sugarcane (Saccharum spp. hybrids) and six related Saccharum species
                                                        

- (Peer Reviewed Journal)Xiong, H., Chen, Y., Gao, S., Pan, Y.-B., Shi, A. 2022. Population structure and genetic diversity analysis in sugarcane (Saccharum spp. hybrids) and six related Saccharum species. Agronomy. 12(2):412. https://doi.org/10.3390/agronomy12020412.SSR-based molecular identification and population structure analysis for the Yunrui-series sugarcane (Saccharum spp. hybrids) genotypes
                                                        

- (Peer Reviewed Journal)Tian, C., Zhu, J., Pan, Y.-B., Lu, X., Dong, L., Burner, D.M., Tao, L., Wu, C., Jing, Y. 2022. SSR-based molecular identification and population structure analysis for the Yunrui-series sugarcane (Saccharum spp. hybrids) genotypes. Sugar Tech. 24(5):1391–1403. https://doi.org/10.1007/s12355-021-01099-8.Utilization of a sugarcane100K single nucleotide polymorphisms microarray-derived high-density genetic map in quantitative trait loci mapping and function role prediction of genes related to chlorophyll content in sugarcane
                                                        

- (Peer Reviewed Journal)Lu, G., Pan, Y., Wang, Z., Xu, F., Cheng, W., Huang, X., Ren, H., Pang, C., Que, Y., Xu, L. 2021. Utilization of a sugarcane100K single nucleotide polymorphisms microarray-derived high-density genetic map in quantitative trait loci mapping and function role prediction of genes related to chlorophyll content in sugarcane. Frontiers in Plant Science. 12. Article 817875. https://doi.org/10.3389/fpls.2021.817875.Sugarcane mosaic disease: characteristics, identification and control
                                                        

- (Peer Reviewed Journal)Lu, G., Wang, Z., Xu, F., Pan, Y., Grisham, M.P., Xu, L. 2021. Sugarcane mosaic disease: characteristics, identification and control. Microorganisms. 9(9):1984. https://doi.org/10.3390/microorganisms9091984.Release of ‘HoCP 14-885’ sugarcane

- (Abstract Only)Registration of ‘Ho 07-613’ sugarcane
                                                        

- (Peer Reviewed Journal)Hale, A.L., Todd, J.R., Pan, Y., Tew, T.L., Veremis, J.C., White, W.H., Dufrene Jr, E.O., Grisham, M.P., Gravois, K.A., Jackson, W.R., Dalley, C.D., Spaunhorst, D.J., Duet Jr, M.J., Landry, C.J., Verdun, D.L. 2022. Registration of ‘Ho 07-613’ sugarcane. Journal of Plant Registrations. 16(2):351-362. https://doi.org/10.1002/plr2.20163.Notice of release of sugarcane variety HoCP 14-885

- (Trade Journal)Todd, J.R., Dufrene Jr, E.O., Hale, A.L., Pan, Y.-B., White, W.H., Grisham, M.P., Gravois, K.A., Jackson, W.R., Dalley, C.D., Waguespack, H.L., Kimbeng, C., Naquin, M.J., Spaunhorst, D.J., Duet Jr, M.J., Landry, C.J., Verdun, D.L. 2021. Notice of release of sugarcane variety HoCP 14-885. Sugar Bulletin. 99(8):19-20.Registration of ‘Ho 11-573’ sugarcane
                                                        

- (Peer Reviewed Journal)Todd, J.R., Hale, A.L., Pan, Y., Tew, T.L., Dufrene Jr, E.O., Duet Jr, M.J., Verdun, D.L., Landry, C.J., Grisham, M.P., Kimbeng, C., Gravois, K.A., Bischoff, K.P., Pontif, M.J., Jackson, W.R., Waguespack Jr, H.L., Davidson, W., Scott Jr, A.W., Hernandez, E., Klostermann, M., Nuessly, G.S., White, W.H., Richard, R.T. 2021. Registration of ‘Ho 11-573’ sugarcane. Journal of Plant Registrations. 15:463-470. https://doi.org/10.1002/plr2.20153.Identification of quantitative trait loci (QTL) controlling fiber content of sugarcane (Saccharum hybrids spp.)
                                                        

- (Peer Reviewed Journal)Islam, M.S., Pan, Y.-B., Lomax, L.E., Grisham, M.P. 2021. Identification of quantitative trait loci (QTL) controlling fiber content of sugarcane (Saccharum hybrids spp.). Plant Breeding. 140(2):360-366. https://doi.org/10.1111/pbr.12912.Registration of ‘Ho 05-961’ sugarcane
                                                        

- (Peer Reviewed Journal)Todd, J.R., Hale, A.L., Pan, Y., Tew, T.L., White, W.H., Dufrene Jr, E.O., Duet Jr, M.J., Verdun, D.L., Spaunhorst, D.J., Dalley, C., Grisham, M.P., Wilson, B.E., Gravois, K.A., Jackson, W.R. 2022. Registration of ‘Ho 05-961’ sugarcane. Journal of Plant Registrations. 16(2):341-350. https://doi.org/10.1002/plr2.20100.Subcellular localization of the D27 protein in sugarcane (Saccharum hybrids spp.) using an optimized protoplast isolation, purification, and transient gene expression protocol
                                                        

- (Peer Reviewed Journal)Wu, Z., Hu, X., Zan, F., Pan, Y.-B., Burner, D.M., Luo, Z., Liu, J., Zhao, L., Yao, L., Zhao, Y., Liu, X., Xia, H., Yang, K., Zhao, J., Zhao, P., Qin, W., Chen, X., Wu, C. 2020. Subcellular localization of the D27 protein in sugarcane (Saccharum hybrids spp.) using an optimized protoplast isolation, purification, and transient gene expression protocol. Sugar Tech. 23(2):316-325. https://doi.org/10.1007/s12355-020-00879-y.Cultivar-specific SSR markers as revealed through fluorescence- labeling and capillary electrophoresis in sugarcane (Saccharum hybrids spp.)

- (Peer Reviewed Journal)Luzaran, R.T., Pan, Y.-B. 2020. Cultivar-specific SSR markers as revealed through fluorescence- labeling and capillary electrophoresis in sugarcane (Saccharum hybrids spp.). Philippine Journal of Crop Science. 45(2):47-57.Genome-wide analysis of the trehalose-6-phosphate synthase (TPS) gene family and expression profiling of ScTPS genes in sugarcane
                                                        

- (Peer Reviewed Journal)Hu, X., Wu, Z., Luo, Z., Burner, D., Pan, Y.-B., Wu, C. 2020. Genome-wide analysis of the trehalose-6-phosphate synthase (TPS) gene family and expression profiling of ScTPS genes in sugarcane. Agronomy Journal. 10(7):969. https://doi.org/10.3390/agronomy10070969.Multivariate analysis of 31 phenotypic traits among major parental lines of sugarcane breeding programs in China
                                                        

- (Peer Reviewed Journal)Wu, J., Wang, Q., Pan, Y., Zie, J., Zhou, F., Xu, H., Qiu, Y., Liu, Z. 2021. Multivariate analysis of 31 phenotypic traits among major parental lines of sugarcane breeding programs in China. The Journal of Animal and Plant Sciences. 31(3):719-732. https://doi.org/10.36899/JAPS.2021.3.0262.Notice of release of sugarcane variety Ho 13-739

- (Trade Journal)Fidelity of sugarcane crosses assessed with SSR markers
                                                        

- (Peer Reviewed Journal)Todd, J.R., Pan, Y.-B., Boykin, D.L. 2020. Fidelity of sugarcane crosses assessed with SSR markers. Agronomy. 10(3):1-18. http://doi.org/10.3390/agronomy10030386.SSR-based genetic identity of sugarcane clones and its potential application in breeding and variety extension
                                                        

- (Peer Reviewed Journal)Wang, Z., Pan, Y.-B., Luo, J., You, Q., Xu, L., Zhang, H., Que, Y. 2020. SSR-based genetic identity of sugarcane clones and its potential application in breeding and variety extension. Sugar Tech. 22(3):367-378. https://doi.org/10.1007/s12355-019-00788-9.Comparative analysis reveals changes in transcriptomes of sugarcane upon infection by Leifsoniaxyli subsp. xyli
                                                        

- (Peer Reviewed Journal)Fu, Y.-H., Wei, J.-J., Pan, Y.-B., Zhou, X., He, E.-Q., Liu, R., Huang, H., Lu, J.-J., Liu, F.-Z. 2019. Comparative analysis reveals changes in transcriptomes of sugarcane upon infection by Leifsoniaxyli subsp. xyli. Journal of Phytopathology. 167:633-644. https://doi.org/10.1111/jph.12856.Phenotypic and molecular characterization of a core collection of Saccharum spontaneum L. in China
                                                        

- (Peer Reviewed Journal)Xu, C., Liu, X., Burner, D.M., Abbas, Z., Pan, Y.-B., Elgamal, I.S., Lu, X., Su, H. 2020. Phenotypic and molecular characterization of a core collection of Saccharum spontaneum L. in China. Sugar Tech. 22(1):76–88. https://doi.org/10.1007/s12355-019-00761-6.SSR marker-assisted management of parental germplasm in sugarcane (Saccharum spp. hybrids) breeding programs
                                                        

- (Peer Reviewed Journal)Wu, J., Wang, Q., Xie, J., Pan, Y.-B., Zhou, F., Guo, Y., Chang, H., Xu, H., Zhang, W., Zhang, C., Qiu, Y. 2019. SSR marker-assisted management of parental germplasm in sugarcane (Saccharum spp. hybrids) breeding programs. Agronomy Journal. 9(8):449. https://doi.org/10.3390/agronomy9080449.Notice of release of sugarcane variety Ho 12-615

- (Trade Journal)Todd, J.R., Hale, A.L., Dufrene Jr, E.O., White, W.H., Tew, T.L., Grisham, M.P., Kimbeng, C., Duet Jr, M.J., Verdun, D.L., Waguespack, H., Pan, Y.-B., Gravois, K.A. 2019. Notice of release of sugarcane variety Ho 12-615. Sugar Bulletin. 97(8):17-18.Registration of ‘HoCP 11-537’ sugarcane
                                                        

- (Peer Reviewed Journal)Todd, J.R., Hale, A.L., Pan, Y.-B., Milligan, S.B., Dufrene Jr, E.O., Duet Jr, M.J., Verdun, D.L., Landry, C.J., Grisham, M.P., Comstock, J.C., Collins, K., Gravois, K., Bischoff, K.P., Pontif, M.J., Jackson, W.R., Waguespack, H.L., Scott, A.W., Hernandez, E., Klostermann, M., Nuessly, G., White, W.H., Richard, R.T. 2019. Registration of ‘HoCP 11-537’ sugarcane. Journal of Plant Registrations. 13:187-192. https://doi.org/10.3198/jpr2018.10.0066crc.Registration of ‘HoCP 09-804’ sugarcane
                                                        

- (Peer Reviewed Journal)Todd, J.R., Dufrene Jr, E.O., Pan, Y.-B., Tew, T.L., White, W.H., Hale, A.L., Duet Jr, M.J., Verdun, D.L., Grisham, M.P., Petrie, E.C., Gravois, K., Waguespack, H., Abbott, T.E. 2019. Registration of ‘HoCP 09-804’ sugarcane. Journal of Plant Registrations. 13:161–169. https://doi.org/10.3198/jpr2017.08.0052crc.Genetic diversity and population structure analysis of Saccharum
and Erianthus genera using microsatellite (SSR) markers
                                                        

- (Peer Reviewed Journal)Ali, A., Pan, Y.-B. Wang, Q., Wang, J., Chen, J., Gao, S. 2019. Genetic diversity and population structure analysis of Saccharum and Erianthus genera using microsatellite (SSR) markers. Scientific Reports. 9:1-10. https://doi.org/10.1038/s41598-018-36630-7.Development and use of simple sequence repeats (SSR) markers for sugarcane breeding and genetic studies
                                                        

- (Review Article)Ahmad, A., Wang, J., Pan, Y., Sharif, R., Gao, S. 2018. Development and use of simple sequence repeats (SSR) markers for sugarcane breeding and genetic studies. Agronomy. 8(11):260. https://doi.org/10.3390/agronomy8110260.Heterologous expression of a Glyoxalase I gene from sugarcane confers tolerance to several environmental stresses in bacteria
                                                        

- (Peer Reviewed Journal)Wu, Q., Gao, S., Pan, Y.-B.., Su, Y., Grisham, M.P., Guo, J., Xi, L., Que, Y. 2018. Heterologous expression of a Glyoxalase I gene from sugarcane confers tolerance to several environmental stresses in bacteria. PeerJ. 6:e5873. https://doi.org/10.7717/peerj.5873.Molecular cloning and expressional analysis of five sucrose transporter (SUT) genes in sugarcane
                                                        

- (Peer Reviewed Journal)Niu, J., Huang, J., Phan, T., Pan, Y., Yang, L., Li, Y. 2018. Molecular cloning and expressional analysis of five sucrose transporter (SUT) genes in sugarcane. Sugar Tech. https://doi.org/10.1007/s12355-018-0623-1.Registration of ‘HoCP 04-838’ sugarcane
                                                        

- (Peer Reviewed Journal)Todd, J.R., White, W.H., Dufrene Jr, E.O., Tew, T.L., Pan, Y.-B., Duet Jr, M.J., Verdun, D.L., Hale, A.L., Dalley, C.D., Grisham, M.P., Gravois, K.A., Jackson, W.R., Miller, J.D. 2018. Registration of ‘HoCP 04-838’ sugarcane. Journal of Plant Registrations. 12:324–332. https://doi.org/10.3198/jpr2017.10.0069crc.A comparative study of three detection techniques for Leifsonia xyli subsp. xyli, the causal pathogen of sugarcane ratoon stunting disease
                                                        

- (Peer Reviewed Journal)Wu, Q., Pan, Y.-B., Zhou, D., Grisham, M.P., Gao, S., Su, Y., Guo, J., Que, Y., Xu, L. 2018. A comparative study of three detection techniques for Leifsonia xyli subsp. xyli, the causal pathogen of sugarcane ratoon stunting disease. BioMed Research International. 2018(2786458):1-11. https://doi.org/10.1155/2018/2786458.New sugarcane hybrids in Saccharum spontaneum cytoplasm developed through a combination of conventional and molecular breeding approaches

- (Abstract Only)Pan, Y., Burner, D.M., Todd, J.R. 2018. New sugarcane hybrids in Saccharum spontaneum cytoplasm developed through a combination of conventional and molecular breeding approaches [abstract]. Journal of the American Society of Sugar Cane Technologists. 38:56.Recent developments in the biosystematics and molecular biology of sugarcane

- (Book / Chapter)Muhammad, K., Ahmad, W., Ahmad, H., Ali, E., Iqbal, J., Pan, Y.-B. 2019. Recent developments in the biosystematics and molecular biology of sugarcane. In: Öztürk, M. et al. Crop Production Technologies for Sustainable Use and Conservation. Palm Bay, FL. Apple Academic Press Inc. p. 131-153.Application of molecular markers in sugarcane germplasm innovation and breeding: new germplasm with cytoplasm from Saccharum spontaneum

- (Abstract Only)Pan, Y-B. 2018. Application of molecular markers in sugarcane germplasm innovation and breeding: new germplasm with cytoplasm from Saccharum spontaneum. Sugar Tech. doi:10.1007/s12355-018-0588-0.Analysis of genotype by environment interaction in Louisiana sugarcane research plots by GGE biplots
                                                        

- (Peer Reviewed Journal)Todd, J.R., Pan, Y.-B, Kimbeng, C., Dufrene Jr, E.O., Waguespack, H., Pontif, M. 2017. Analysis of genotype by environment interaction in Louisiana sugarcane research plots by GGE biplots. Sugar Tech. 20(4):407-419. https://doi:10.1007/s12355-017-056-z.Molecular identification and genetic diversity analysis of Chinese sugarcane (Saccharum spp. hybrids) varieties using SSR markers

- (Peer Reviewed Journal)Ahmad, A., Wang, J., Pan, Y., Deng, Z., Chen, Z., Chen, R., Gao, S. 2017. Molecular identification and genetic diversity analysis of Chinese sugarcane (Saccharum spp. hybrids) varieties using SSR markers. Tropical Plant Biology. Available: https://doi.org/10.1007/s12042-017-9195-6.Length and nucleotide sequence polymorphism at the trnL and trnF non-coding regions of chloroplast genomes among Saccharum and Erianthus species

- (Abstract Only)Pan, Y., Todd, J.R., Scheffler, B.E., Hale, A.L., Lomax, L.E., Simpson, S.A., Liu, F., Grisham, M.P. 2017. Length and nucleotide sequence polymorphism at the trnL and trnF non-coding regions of chloroplast genomes among Saccharum and Erianthus species [abstract]. Journal of the American Society of Sugar Cane Technologists. 37:32.Development of an RAPD-based SCAR marker for smut disease resistance in commercial sugarcane cultivars of Pakistan
                                                        

- (Peer Reviewed Journal)Khan, M., Pan, Y.-B., Iqbal, J. 2017. Development of an RAPD-based SCAR marker for smut disease resistance in commercial sugarcane cultivars of Pakistan. Crop Protection. 94:166-172.Isolation and characterization of centromeric repetitive DNA sequences in Saccharum spontaneum
                                                        

- (Peer Reviewed Journal)Zhang, W., Zuo, S., Li, Z., Meng, Z., Han, J., Song, J., Pan, Y.-B., Wang, K. 2017. Isolation and characterization of centromeric repetitive DNA sequences in Saccharum spontaneum. Scientific Reports. 7:41659. doi:10.1038/srep41659(2017).Genotype-specific microsatellite (SSR) markers for the sugarcane germplasm in the Karst region of Guizhou, China
                                                        

- (Peer Reviewed Journal)Fu, Y., Pan, Y., Lei, C., Grisham, M.P., Yang, C.L., Meng, Q.Y. 2016. Genotype-specific microsatellite (SSR) markers for the sugarcane germplasm in the Karst region of Guizhou, China. American Journal of Plant Sciences. 7:2209-2220. doi:10.4236/ajps.2016.715195.SSR-CE/FD assessment of Guizhou approved sugarcane cultivars and regional materials

- (Peer Reviewed Journal)Fu, Y.-H, Pan, Y.-B., Lei, C.-Y., Xie, H.-J., Lei, S.-F., Lu, J.-J. 2017. SSR-CE/FD assessment of Guizhou approved sugarcane cultivars and regional materials. Chinese Agricultural Science Bulletin. 33(8):5-12.Genetic diversity analysis of nine chewing cane varieties (lines) and construction of their DNA fingerprints

- (Peer Reviewed Journal)He, E.-Q., Pan, Y.-B., Fu, Y.-H., Lei, S.-F., Li, X.-Y., Lu, J.-J., Zhang, Z.-X. 2016. Genetic diversity analysis of nine chewing cane varieties (lines) and construction of their DNA fingerprints. Journal of Southern Agriculture. 47(11):1815-1821.Development and integration of an SSR-based molecular identity database into sugarcane breeding program

- (Other)Pan, Y.-B. 2016. Development and integration of an SSR-based molecular identity database into sugarcane breeding program [Editorial]. Agronomy. 6(2):28. DOI:10.3390/agronomy6020028.Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)
                                                        

- (Peer Reviewed Journal)Arro, J., Park, J.-W., Wai, C. M., Van Buren, R., Pan, Y.-B., Nagai, C., Da Silva, J., Ming, R. 2016. Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.). Euphytica. 209:477-493. DOI: 10.1007/s10681-016-1672-8Rational regional distribution of sugarcane cultivars in China
                                                        

- (Peer Reviewed Journal)Luo, J., Pan, Y.-B., Xu, L., Grisham, M.P., Zhang, H., Que, Y. 2015. Rational regional distribution of sugarcane cultivars in China. Scientific Reports. 5:15701. DOI: 10.1038/srep15721.Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (saccharum spp. hybrids) cultivar ‘LCP 85-384’

- (Abstract Only)Pan, Y-B., Liu, P., Chandra, A., Que, Y., Chen, P., Grisham, M.P. 2016. Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (saccharum spp. hybrids) cultivar ‘LCP 85-384’ [abstract]. International Plant and Animal Genome Conference, January 9-13, 2016, San Diego, CA.Biplot evaluation of test environments and identification of mega-environments for sugarcane cultivars in China
                                                        

- (Peer Reviewed Journal)Luo, J., Pan, Y.-B., Youxiong, Q., Zhang, H., Grisham, M.P., Liping, X. 2015. Biplot evaluation of test environments and identification of mega-environments for sugarcane cultivars in China. Scientific Reports. 5:15505. doi:10.1038/srep15505.Impact of biotechnology on sugarcane agriculture and industry

- (Proceedings)Pan, Y.-B. 2015. Impact of biotechnology on sugarcane agriculture and industry. Proceedings for International Conference on: World economics for sugar industry towards food and energy in a changed economic environment. November 7-10, 2015, Aswan, Egypt.Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (Saccharum spp. hybrids) cultivar ‘LCP 85-384’
                                                        

- (Peer Reviewed Journal)Liu, P., Chandra, A., Que, Y., Chen, P.-H., Grisham, M.P., White, W.H., Dalley, C.D., Tew, T.L., Pan, Y.-B. 2016. Identification of quantitative trait loci controlling sucrose content based on an enriched genetic linkage map of sugarcane (Saccharum spp. hybrids) cultivar ‘LCP 85-384’. Euphytica. 207:527-549. doi:10.1007/s10681-015-1538-5.Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids
                                                        

- (Peer Reviewed Journal)Lu, X., Zhou, H., Pan, Y.-B., Chen, C.Y., Zhu, J., Chen, P., Cai, Q., Chen, R. 2015. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids. Genetics and Molecular Research. 14(4):18384-18395. DOI: 10.4238/2015.December.23.26.Genetic diversity analysis of sugarcane germplasm based on fluorescence-labeled simple sequence repeat markers and a capillary electrophoresis-based genotyping platform
                                                        

- (Peer Reviewed Journal)You, Q., Pan, Y.-B., Xu, L.-P., Gao, S.-W., Wang, Q.-N., Su, Y.-C., Yang, Y.-Q., Wu, Q.-B., Zhou, D.-G., Que, Y.-X. 2016. Genetic diversity analysis of sugarcane germplasm based on fluorescence-labeled simple sequence repeat markers and a capillary electrophoresis-based genotyping platform. Sugar Tech. 18:380-390. DOI: 10.1007/s12355-015-0395-9.Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry

- (Abstract Only)Pan, Y., Scheffler, B.E., Dufrene Jr, E.O., Waguespack, H., Grisham, M.P. 2015. Fluorescence- and capillary electrophoresis (CE)-based SSR DNA fingerprinting and a molecular identity database for the Louisiana sugarcane industry. Journal of the American Society of Sugar Cane Technologists. 35:51.Genetic analysis of resistance gene analogues from a sugarcane cultivar resistant to red rot disease
                                                        

- (Peer Reviewed Journal)Hameed, U., Pan, Y.-B., Iqbal, J. 2015. Genetic analysis of resistance gene analogues from a sugarcane cultivar resistant to red rot disease. Journal of Phytopathology. 163:755-763. DOI: 10.1111/jph.12372DOI:10.1111/jph.12372.The latest progress in sugarcane molecular genetics research at the USDA-ARS, Sugarcane Research Laboratory

- (Abstract Only)Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids

- (Abstract Only)Pan, Y.-B., Lu, X., Zhou, H., Chen, C.Y., Zhu, J., Chen, P., Cai, Q., Chen, R. 2015. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids [abstract]. Plant and Animal Genome XXIII Conference. Paper No. 13970. Available: https://pag.confex.com/pag/xxiii/webprogram/Paper13970.htmlAllelic divergence and cultivar-specific SSR alleles revealed by
capillary electrophoresis using fluorescence-labeled SSR
markers in sugarcane
                                                        

- (Peer Reviewed Journal)Chandra, A., Grisham, M.P., Pan, Y.-B. 2014. Allelic divergence and cultivar-specific SSR alleles revealed by capillary electrophoresis using fluorescence-labeled SSR markers in sugarcane. Genome. 57:363–372. doi:10.1139/gen-2014-0072.Independently segregating simple sequence repeats (SSR) alleles in polyploid sugarcane
                                                        

- (Peer Reviewed Journal)Pan, Y.-B., Liu, P., Que, Y. 2014. Independently segregating simple sequence repeats (SSR) alleles in polyploid sugarcane. Sugar Tech. 17(3):235-242. DOI: 10.1007/s12355-014-0330-5.Photosynthetic and canopy characteristics of different varieties at the early elongation stage and their relationships with the cane yield in sugarcane
                                                        

- (Peer Reviewed Journal)Luo, J., Pan, Y.-B., Xu, L., Zhang, Y., Zhang, H., Chen, R., Que, Y. 2014. Photosynthetic and canopy characteristics of different varieties at the early elongation stage and their relationships with the cane yield in sugarcane. The Scientific World Journal. 2014:1-9. Article ID 707095. DOI: 10.1155/2014/707095.Cultivar evaluation and essential test locations identification for sugarcane breeding in China
                                                        

- (Peer Reviewed Journal)Luo, J., Pan, Y.-B., Xu, L., Zhang, H., Yuan, Z., Deng, Z., Chen, R., Que, Y. 2014. Cultivar evaluation and essential test locations identification for sugarcane breeding in China. The Scientific World Journal. 2014:1-10. Article ID 302753. DOI: 10.1155/2014/302753.Molecular cloning and functional analysis of an ethylene receptor gene from sugarcane (Saccharum spp.) by hormone and environmental stresses
                                                        

- (Peer Reviewed Journal)Wang, A., Ye, X., Huang, J., Niu, J., Liu, M., Pan, Y-B., Yang, L., Li, Y. 2015. Molecular cloning and functional analysis of an ethylene receptor gene from sugarcane (Saccharum spp.) by hormone and environmental stresses. Sugar Tech (Jan-Mar 2015) 17(1):22-30. DOI: 10.1007/s12355-014-0324-3.Ho 07-613 – A potential new sugarcane variety for Louisiana

- (Abstract Only)White, W.H., Dufrene Jr, E.O., Verdun, D.L., Duet Jr, M.J., Hale, A.L., Landry, C.J., Grisham, M.P., Warnke, K.Z., Pan, Y.-B. 2014. Ho 07-613 – A potential new sugarcane variety for Louisiana [abstract]. Journal of the American Society of Sugar Cane Technologists. 34:61.Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids

- (Abstract Only)Pan, Y.-B., Zhou, H., Chen, C.Y., Lu, X., Cai, Q., Zhu, J., Chen, P.H., Chen, R.K. 2014. Segregation analysis of microsatellite (SSR) markers in sugarcane polyploids. Journal of the American Society of Sugar Cane Technologists. 34:64-65.Biogeographical variation and population genetic structure of sporisorium scitamineum in mainland China: Insights from ISSR and SP-SRAP markers
                                                        

- (Peer Reviewed Journal)Xu, L., Lu, Y., You, Q., Liu, X., Grisham, M.P., Pan, Y.-B., Que, Y. 2014. Biogeographical variation and population genetic structure of sporisorium scitamineum in mainland China: Insights from ISSR and SP-SRAP markers. The Scientific World. 2014:1-13. Article ID 296020. DOI: 10.1155/2014/296020.Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism
                                                        

- (Peer Reviewed Journal)Que, Y., Pan, Y.-B., Lu, Y., Yang, C., Yang, Y., Huang, N., Xu, L. 2014. Genetic analysis of diversity within a Chinese local sugarcane germplasm based on start codon targeted polymorphism. BioMed Research International. 2014:1-10. Article ID 468375. DOI: 10.1155/2014/468375.Allelic divergence in sugarcane cultivars revealed through capillary electrophoregrams of fluorescence-labeled microsatellite markers

- (Abstract Only)Chandra, A., Grisham, M.P., Pan, Y-B. 2014. Allelic divergence in sugarcane cultivars revealed through capillary electrophoregrams of fluorescence-labeled microsatellite markers [abstract]. Plant and Animal Genome XXII Program. Available online: https://pag.confex.com/pag/xxii/webprogram/Paper11195.html.Postharvest accumulation of resveratrol and piceatannol in sugarcane with enhanced antioxidant activity

- (Peer Reviewed Journal)Boue, S.M., Shih, B.Y., Burow, M., Eggleston, G., Lingle, S.E., Pan, Y., Daigle, K.W., Bhatnagar, D. 2013. Postharvest accumulation of resveratrol and piceatannol in sugarcane with enhanced antioxidant activity. Journal of Agricultural and Food Chemistry. 61:8412-8419.Effectiveness of molecular techniques in identification of Erianthus hybrids

- (Abstract Only)Pan, Y-B. 2013. Effectiveness of molecular techniques in identification of Erianthus hybrids [abstract]. International Workshop on Nobilisation of Erianthus, May 23-27, 2013, Fiji. Report available online: http://www.acp-srp.eu/sites/default/files/Rapport/cr%20fiji.pdfUse of SSR markers for DNA fingerprinting and diversity analysis of Pakistani sugarcane (Saccharum spp. hybrids) cultivars

- (Abstract Only)Pan, Y-B., Hadeed, U., Khushi, M., Afghan, S., Iqbal, J. 2013. Use of SSR markers for DNA fingerprinting and diversity analysis of Pakistani sugarcane (Saccharum spp. hybrids) cultivars. Journal of the American Society of Sugar Cane Technologists. 33:23. Also available: http://www.assct.org/journal/JASSCT%20PDF%20Files/volume%2033/JASSCT_Abstracts_2013.pdfGenetic variability among the chloroplast genomes of sugarcane (Saccharum spp.) and its wild progenitor species Saccharum spontaneum L.
                                                        

- (Peer Reviewed Journal)Zhu, J.R., Zhou, H., Pan, Y.-B., Lu, X. 2014. Genetic variability among the chloroplast genomes of sugarcane (Saccharum spp.) and its wild progenitor species Saccharum spontaneum L. Genetics and Molecular Research. 13(2):3037-3047. DOI: 10.4238/2014.January.24.3.Genetic variability among the chloroplast genomes of sugarcane (Saccharum spp.) and its wild progenitor species S. spontaneum L.

- (Abstract Only)Pan, Y.-B., Zhou, H., Zhu, J., Lu, X. 2012. Genetic variability among the chloroplast genomes of sugarcane (Saccharum spp.) and its wild progenitor species S. spontaneum L.[abstract]. Plant and Animal Genome XXI Conference, January 12-16, 2013, San Diego, CA. Available: https://pag.confex.com/pag/xxi/webprogram/Paper6132.html.Molecular characterization and phylogenetic analysis of sugarcane yellow leaf virus isolates from China

- (Peer Reviewed Journal)Gao, S., Lin, Y.-H., Pan, Y.-B., Damaj, M.B., Wang, Q.-N., Mirkov, T.E., Chen, R.-K. 2012. Molecular characterization and phylogenetic analysis of sugarcane yellow leaf virus isolates from China. Virus Genes. 45:340-349. DOI 10:1007/s11262-012-0774-1.Registration of ‘Ho 02-113’ Sugarcane

- (Peer Reviewed Journal)Hale, A.L., Dufrene Jr, E.O., Tew, T.L., Pan, Y-B., Viator, R.P., White Jr, P.M., Veremis, J.C., White, W.H., Cobill, R., Richard, E.P., Rukavina, H., Grisham, M.P. 2012. Registration of ‘Ho 02-113’ Sugarcane. Journal of Plant Registrations. 7(1):51-57. doi:10.3198/jpr2011.11.0605crc.HoCP 04-838 – A new sugarcane variety for Louisiana

- (Abstract Only)Hale, A.L., White, W.H., Dufrene Jr, E.O., Tew, T.L., Grisham, M.P., Pan, Y., Miller, J.D. 2012. HoCP 04-838 – A new sugarcane variety for Louisiana. Journal of the American Society of Sugar Cane Technologists. 32:84.Available: http://www.assct.org/. Also published in Sugar Journal. 75(1):17-18.Genome size variation in three Saccharum species

- (Peer Reviewed Journal)Zhang, J., Nagai, C., Yu, Q., Pan, Y., Ayala Silva, T., Schnell Ii, R.J., Comstock, J.C., Arumuganathan, A.K., Ming, R. 2012. Genome size variation in three Saccharum species. Euphytica. 185:511-519. DOI: 10.1007/S10681-012-0664-6.Use of Simple Sequence Repeat (SSR) markers for DNA fingerprinting and diversity analysis of sugarcane (Saccharum spp.) cultivars resistant and susceptible to red rot

- (Peer Reviewed Journal)Hameed, U., Pan, Y-B., Muhammad, K., Afghan, S., Iqbal, J. 2012. Use of simple sequence repeat (SSR) markers for DNA fingerprinting and diversity analysis of sugarcane (Saccharum spp) cultivars resistant and susceptible to red rot. Genetics and Molecular Research. 11(2):1195-1204.Biotechnology: Impact on sugarcane agriculture and industry

- (Proceedings)Pan, Y.-B. 2012. Biotechnology: Impact on sugarcane agriculture and industry. International Association of Professionals in Sugar and Integrated Technologies Conference (IAPSIT) International Sugar Conference (IS-2011), New Delhi, India, November 21 - 25, 2011. Available online. Sugar Tech (Jan-Mar 2012). 14(1):1-2. DOI: 10.1007/S12355-012-0136-2.Segregation analysis of SSR markers in polyploidy sugarcane

- (Abstract Only)Pan, Y.-B., Liu, P., Que, Y. 2011. Segregation analysis of SSR markers in polyploidy sugarcane. International Plant and Animal Genome XX Conference.Poster Abstracts [online]. Available: http://pag.confex.com/pag/xx/webprogram/Paper3264.htmlWhole genome amplification of single pollen grains from a sugarcane cultivar and analysis of the genetic relatedness based on SCoT markers

- (Peer Reviewed Journal)Chen, P., Chen, R., Xu, L., Wang, H., Chen, L., Lin, B., Shi, G., Zhang, Z., Gao, S., Guo, J., Pan, Y.-B. 2011. Whole genome amplification of single pollen grains from a sugarcane cultivar and analysis of the genetic relatedness based on SCoT markers. Chinese Journal of Tropical Crops. 32(11):2069-2075.First report of ratoon stunt of sugarcane caused by Leifsonia xyl. subsp. xyli in Pakistan

- (Peer Reviewed Journal)Hussnain, S.Z., Afghan, S., Haq, M.I., Comstock, J.C., Mughal, S.M., Shahazad, A., Hussain, K., Nawaz, K., Pan, Y.-B., Jackson, P., Batool, A., Irfan, A. 2011. First report of ratoon stunt of sugarcane caused by Leifsonia xyl. subsp. xyli in Pakistan. Plant Dis. 95:1581.Genetic structure and diversity of parental cultivars involved in China mainland sugarcane breeding programs as inferred from DNA microsatellites

- (Peer Reviewed Journal)Qi, Y., Pan, Y.-B., Lao, F., Zhang, C., He, H., Fan, L., Liu, R., Wang, Q., Liu, S., Liu, F., Li, Q., Deng, H. 2012. Genetic structure and diversity of parental cultivars involved in China mainland sugarcane breeding programs as inferred from DNA microsatellites. Journal of Integrative Agriculture. 11(11):1794-1803.Highly polymorphic microsatellite DNA markers for sugarcane germplasm evaluation and variety identity testing

- (Peer Reviewed Journal)Liu, P., Que, Y., Pan, Y.-B. 2011. Highly polymorphic microsatellite DNA markers for sugarcane germplasm evaluation and variety identity testing. Sugar Tech. 13(2):129-136.Registration of ‘Ho 00-961’ sugarcane

- (Peer Reviewed Journal)White, W.H., Cobill, R.M., Tew, T.L., Burner, D.M., Grisham, M.P., Dufrene Jr, E.O., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L. 2011. Registration of ‘Ho 00-961’ Sugarcane. Journal of Plant Registrations. 5(3):332-338.A LCP 85-384 genetic linkage map enriched with polymorphic SSR markers

- (Abstract Only)Liu, P., Que, Y., Andru, S., Kimbeng, C.A., Pan, Y.-B. 2011. A LCP 85-384 genetic linkage map enriched with polymorphic SSR markers. Journal of the American Society of Sugar Cane Technologists. 31:57-58. Available: http://assct.org/journal/JASSCT%20PDF%20Files/Volume%2031/rpvASSCTabstracts2011.pdfGenetic variability among the brown rust resistant and susceptible genotypes of sugarcane by RAPD technique

- (Peer Reviewed Journal)Muhammad, K., Afghan, S., Pan, Y.-B., Iqbal, J. 2013. Genetic variability among the brown rust resistant and susceptible genotypes of sugarcane by RAPD technique. Pakistan Journal of Botany. 45(1):163-168.Genetic analysis of the sugarcane (Saccharum spp.) cultivar LCP 85-384. I. linkage mapping using AFLP, SSR, and TRAP markers

- (Peer Reviewed Journal)Andru, S., Pan, Y.-B., Thongthawee, S., Burner, D.M., Kimbeng, C.A. 2011. Genetic analysis of the sugarcane (Saccharum spp.) cultivar LCP 85-384. I. linkage mapping using AFLP, SSR, and TRAP markers. Theoretical and Applied Genetics. 123(1):77-93.Databasing molecular identities of sugarcane (Saccharum spp.)clones constructed with microsatellite (SSR) DNA markers

- (Peer Reviewed Journal)Pan, Y.-B. 2010. Databasing molecular identities of sugarcane (Saccharum spp.) clones constructed with microsatellite (SSR) DNA markers. American Journal of Plant Sciences. 1(2):87-94. DOI: 10.4236/ajps.2010.12011Registration of 'HoCP 91-552' sugarcane

- (Peer Reviewed Journal)Tew, T.L., Dufrene Jr, E.O., Cobill, R.M., Garrison, D.D., White, W.H., Grisham, M.P., Pan, Y.-B., Legendre, B.L., Richard Jr, E.P., Miller, J.D. 2011. Registration of 'HoCP 91-552' sugarcane. Journal of Plant Registrations. 5:181-190.Inheritance of SSR DNA markers in a self progeny population of the Louisiana sugarcane cultivar LCP 85-384

- (Abstract Only)Pan, Y.-B. 2011. Inheritance of SSR DNA markers in a self progeny population of the Louisiana sugarcane cultivar LCP 85-384 [abstract]. Plant and Animal Genomes XIX Conference, January 15-19, 2011. San Diego, CA. Available: http://www.intl-pag.org/19/abstracts/P05d_PAGXIX_358.htmlAnalysis of SSR information in EST resources of sugarcane

- (Peer Reviewed Journal)Yan, X., Que, Y., Xu, L., Guo, J., Chen, R., Pan, Y.-B. 2010. Analysis of SSR information in EST resources of sugarcane. Chinese Journal of Tropical Crops. 31(9):1497-1501.Genetic diversity assessment of Saccharum species and elite cultivars from China using SSR markers

- (Peer Reviewed Journal)Liang, J., Pan, Y.-B., Li, Y.-R., Fang, F.-X., Wu, K.-C., You, J.-H. 2010. Genetic diversity assessment of Saccharum species and elite cultivars from China using SSR markers. Guihaia. 30(5):594-600.Detection of sugarcane yellow leaf virus by direct antigen coated enzyme-linked immunosorbent assay

- (Peer Reviewed Journal)Gao, S., Pan, Y.-B., Chen, R.-K. 2010. Detection of sugarcane yellow leaf virus by direct antigen coated enzyme-linked immunosorbent assay. Chinese Journal of Tropical Crops. 31(8):1356-1361.Development of a genetic linkage map for Louisiana sugarcane: New microsatellite (SSR) DNA markers identified for LCP 85-384

- (Abstract Only)Pan, Y.-B., Liu, P. 2010. Development of a genetic linkage map for Louisiana sugarcane: New microsatellite (SSR) DNA markers identified for LCP 85-384 [abstract]. Journal of the American Society of Sugar Cane Technologists. 30:137.Searching for DNA markers associated with sugar content in sugarcane

- (Abstract Only)Liu, P., Pan, Y.-B., Grisham, M.P., Tew, T.L., White, W.H., Richard Jr, E.P. 2010. Searching for DNA markers associated with sugar content in sugarcane [abstract]. Journal of the American Society of Sugar Cane Technologists. 30:138.Isolation and characterization of resistant gene analogs from RSD resistant and susceptible sugarcane clones: A progress report

- (Abstract Only)Hameed, U., Pan, Y.-B., Grisham, M.P., Iqbal, J. 2010. Isolation and characterization of resistant gene analogs from RSD resistant and susceptible sugarcane clones: A progress report [abstract]. Journal of the American Society of Sugar Cane Technologists. 30:153.Identification of RAPD marker associated with brown rust resistance in sugarcane

- (Abstract Only)Muhammad, K., Pan, Y.-B., Grisham, M.P., Iqbal, J. 2010. Identification of RAPD marker associated with brown rust resistance in sugarcane [abstract]. Journal of the American Society of Sugar Cane Technologists. 30:138.Genetic analysis of the sugarcane (Saccharum spp.) cultivar "LCP 85-384".II. identification of QTAs for starch

- (Abstract Only)Suman, A., Zhou, M.M., Pan, Y.-B., Kimbeng, C.A. 2010. Genetic analysis of the sugarcane (Saccharum spp.) cultivar "LCP 85-384".II. identification of QTAs for starch [abstract]. Journal of the American Society of Sugar Cane Technologists. 30:138.Microsatellite (simple sequence repeat) marker-based paternity analysis of a seven-parent sugarcane polycross

- (Peer Reviewed Journal)Tew, T.L., Pan, Y.-B. 2010. Microsatellite (simple sequence repeat) marker-based paternity analysis of a seven-parent sugarcane polycross. Crop Science. 50:1401-1408.SSR marker-based analysis of genetic relatedness among sugarcane cultivars (Saccharum spp. hybrids) from breeding programs in China and other countries

- (Peer Reviewed Journal)Chen, P.-H., Pan, Y.-B., Chen, R.-K., Xu, L.-P., Chen, Y.-Q. 2009. SSR marker-based analysis of genetic relatedness among sugarcane cultivars (Saccharum spp. hybrids) from breeding programs in China and other countries. Sugar Tech. 11(4):347-354.Assessment of genetic diversity in Saccharum using SSR markers and capillary electrophoresis

- (Peer Reviewed Journal)Liang, J., Pan, Y.-B., Li, Y.-R., Fang, F.-X. 2010.  Assessment of genetic diversity in Saccharum using SSR markers and capillary electrophoresis. Guihaia. 30(1):106-111.Energy Cane Breeding and Selection in Louisiana - A Progress Report

- (Abstract Only)Tew, T.L., Hale, A.L., Pan, Y.-B., Richard Jr, E.P. 2009. Energy Cane Breeding and Selection in Louisiana - A Progress Report. Available on International Society of Sugar Cane Technologists website:  http://issct.intnet.muDatabasing Molecular Identities of Louisiana, Florida, and Texas Sugarcane Clones

- (Abstract Only)Pan, Y.-B. Databasing Molecular Identities of Louisiana, Florida, and Texas Sugarcane Clones. J. Am. Soc. Sugar Cane Technol. 29:87.A Genetic Linkage Map of Louisiana Sugarcane (Saccharum spp. hybrids) using AFLP and SSR Markers

- (Abstract Only)Pan, Y.-B., Suman, A., Zhou, M., Kimbeng, C.A., Scheffler, B.E., Grisham, M.P., Tew, T.L., White, W.H., Richard Jr, E.P. 2009. A Genetic Linkage Map of Louisiana Sugarcane (Saccharum spp. hybrids) using AFLP and SSR Markers. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper 58-1. Available: http://a-c-s.confex.com/crops/2009am/webprogram/Paper52547.htmlQuick detection of Leifsonia xyli subsp. xyli by PCR and necleotide sequence analysis of PCR amplicons from Chinese Leifsonia xyli subsp. xyli isolates

- (Peer Reviewed Journal)Gao, S.-J., Pan, Y.-B., Chen, R.-K., Chen, P.-H., Zhang, H., Xu, L.-P. 2008. Quick detection of Leifsonia xyli subsp. xyli by PCR and necleotide sequence analysis of PCR amplicons from Chinese Leifsonia xyli subsp. xyli isolates. Sugar Tech. 10(4):334-340.Registration of "HoCP 00-950" Sugarcane

- (Peer Reviewed Journal)Tew, T.L., Dufrene Jr, E.O., Garrison, D.D., White, W.H., Grisham, M.P., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L., Miller, J.D. 2009. Registration of "HoCP 00-950" Sugarcane. Journal of Plant Registrations. 3(1):42-50. DOI:10.3198/jpr.2008.07.0430crcDeveloping a sugarcane molecular identity database for use in breeding

- (Abstract Only)Pan, Y.-B., Scheffler, B.E., Richard Jr, E.P. 2008. Developing a sugarcane molecular identity database for use in breeding [abstract]. Available: http://www.issct.org/past-workshops/pathmbiolreport08.html. Also in: Proceedings IX Plant Pathology and VI Molecular Biology Workshop. June 23-27, 2008. Cali, Colombia. p. 6.DNA Based Genetic Variation for Red Rot Resistance in Sugarcane

- (Peer Reviewed Journal)Alvi, A.K., Iqbal, J., Shah, A.H., Pan, Y.-B. 2008. DNA Based Genetic Variation for Red Rot Resistance in Sugarcane. Pakistan Journal of Botany. 40(4):1419-1425.Notice of Release of High-Fiber Sugarcane Variety HoCP 91-552

- (Trade Journal)Tew, T.L., Dufrene Jr, E.O., Garrison, D.D., White, W.H., Grisham, M.P., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L., Miller, J.D. 2007. Notice of release of high-fiber sugarcane variety HoCP 91-552. Sugar Bulletin. 85(10):25-26.Notice of release of high-fiber sugarcane variety Ho 00-961

- (Trade Journal)Tew, T.L., Dufrene Jr, E.O., Garrison, D.D., White, W.H., Grisham, M.P., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L., Miller, J.D. 2007. Notice of release of high-fiber sugarcane variety Ho 00-961. Sugar Bulletin. 85(10):23-24.A high-throughput procedure for single pollen grain collection and PCR

- (Abstract Only)Pan, Y.-B., Chen, P.-H., Chen, R.-K. 2008. A high-throughput procedure for single pollen grain collection and PCR. In: Final Abstracts Guide of the Plant and Animal Genome XVI. International Plant & Animal Genome XVI Conference, January 12-16, 2007, San Diego, California. p. 138.Notice of release of sugarcane variety HoCP 00-950

- (Trade Journal)Tew, T.L., Dufrene Jr, E.O., Garrison, D.D., White, W.H., Grisham, M.P., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L., Miller, J.D. 2007. Notice of release of sugarcane variety HoCP 00-950. Sugar Bulletin. 85(9):21-23.High-throughput procedure for single pollen grain collection and polymerase chain reaction in plants

- (Peer Reviewed Journal)Chen, P.-H., Pan, Y.-B., Chen, R.-K. 2008. High-throughput procedure for single pollen grain collection and polymerase chain reaction in plants. Journal of Integrative Plant Biology. 50:375-383.High-throughput genotyping of commercial sugarcane clones with microsatellite (SSR) DNA markers

- (Peer Reviewed Journal)Pan, Y.-B., Scheffler, B.S., Richard, Jr., E.P. 2007. High-throughput genotyping of commercial sugarcane clones with microsatellite (SSR) DNA markers. Sugar Tech. 9:176-181.RATING SUGARCANE VARIETIES FOR SUSCEPTIBILITY TO RSD WITH REAL-TIME PCR

- (Abstract Only)Grisham, M.P., Pan, Y.-B., Richard Jr, E.P. Rating Sugarcane Varieties for Susceptibility to RSD with Real-Time PCR [abstract]. 2007. Journal of the American Society of Sugar Cane Technologists. 27:60.Genetic diversity and phylogenetic relationships among sugarcane and related species determined from microsatellite DNA data

- (Abstract Only)Pan, Y.-B. 2007. Genetic diversity and phylogenetic relationships among sugarcane and related species determined from microsatellite DNA data [abstract].  Journal of the American Society of Sugar Cane Technologists. 27:57.HoCP 00-950: an early maturing variety for the Louisiana sugar industry

- (Abstract Only)Dufrene Jr, E.O., Tew, T.L., White, W.H., Grisham, M.P., Pan, Y.-B., Richard Jr, E.P. 2007. HoCP 00-950: An early maturing variety for the Louisiana sugar industry. Journal of the American Society of Sugar Cane Technologists. 27:55.Using microsatellite DNA markers to determine the genetic identity of parental clones used in the Louisiana sugarcane breeding program

- (Abstract Only)Pan, Y.-B., Scheffler, B.E., Richard Jr, E.P. 2007. Using microsatellite DNA markers to determine the genetic identity of parental clones used in the Louisiana sugarcane breeding program. Journal of the American Society of Sugar Cane Technologists. 27:71.A SHIFT IN THE VIRUS STRAINS THAT CAUSE MOSAIC IN LOUISIANA SUGARCANE

- (Peer Reviewed Journal)Grisham, M.P., Pan, Y.B. 2007. A genetic shift in the virus strains that cause mosaic in Louisiana sugarcane. Plant Disease. 91:453-458.EARLY DETECTION OF LEIFSONIA XYLI SUBSP. XYLI IN SUGARCANE LEAVES BY REAL-TIME PCR

- (Peer Reviewed Journal)Grisham, M.P., Pan, Y., Richard Jr, E.P. 2007. Early detection of Leifsonia xyli subsp. xyli in sugarcane leaves by real-time polymerase chain reaction. Plant Disease. 91:430-434.Highly polymorphic microsatellite DNA markers for sugarcane germplasm evaluation and variety identity testing

- (Peer Reviewed Journal)Pan, Y.-B. 2006. Highly polymorphic microsatellite DNA markers for sugarcane germplasm evaluation and variety identity testing. Sugar Tech. 8(4):246-256.MICROSATELLITE-BASED PATERNITY ANALYSIS OF A SEVEN-PARENT SUGARCANE POLYCROSS

- (Abstract Only)Tew, T.L., Pan, Y. 2006. Microsatellite-based paternity analysis of a seven-parent sugarcane polycross [abstract]. In: 8th International Society of Sugar Cane Technologists Breeding and Germplasm Workshop Abstract Book, May 1-5, 2006, Guayaquil-Ecuador. p. 5.NON-CYTOPLASMIC PHENOTYPIC DIFFERENCES IN PROGENY OF A RECIPROCAL CROSS IN SUGARCANE

- (Abstract Only)Tew, T.L., Pan, Y. 2005. Non-Cytoplasmic Phenotypic Differences in Progeny of a Reciprocal Cross in Sugarcane [abstract]. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America International Annual Meetings. Available: http://crops.confex.com/crops/2005am/techprogram/P5443.HTMMOLECULAR ASSESSMENT OF THE FIDELITY OF SUGARCANE CROSSES WITH HIGH-THROUGHPUT MICROSATELLITE GENOTYPING

- (Abstract Only)Tew, T.L., Pan, Y. 2005. Molecular Assessment of the Fidelity of Sugarcane Crosses with High-Throughput Microsatellite Genotyping. Journal of the American Society of Sugar Cane Technologists. 25:119. Available: http://www.assct.org/journal/journal.htmAPPLICATION OF HIGH-THROUGHPUT DNA MARKER TECHNOLOGY IN SUGARCANE BREEDING: PHASE II - PCR AMPLIFICATION AND CAPILLARY ELECTROPHORESIS

- (Abstract Only)Pan, Y., Scheffler, B.E., Richard Jr, E.P. 2005. Application of High-Throughput DNA Marker Technology in Sugarcane Breeding: Phase II - PCR Amplification and Capillary Electrophoresis. Journal of the American Society of Sugar Cane Technologists. 25:117. Available: http://www.assct.org/journal/journal.htmDETECTION AND QUANTIFICATION OF LEIFSONIA XYLI SUBSP. XYLI IN SUGARCANE BY REAL-TIME PCR

- (Abstract Only)Grisham, M.P., Pan, Y. 2005. Detection and Quantification of Leifsonia xyli subsp. xyli in Sugarcane by Real-Time PCR. Phytopathology. 95(6) (Supplement):S36.Registration of 'Ho 95-988' sugarcane

- (Peer Reviewed Journal)Tew, T.L., Burner, D.M., Legendre, B.L., White, W.H., Grisham, M.P., Dufrene, E.O., Garrison, D.D., Veremis, J.C., Pan, Y.-B., Richard, E.P. 2005. Registration of 'Ho 95-988' sugarcane. Crop Science. 45(4):1660-1661.HIGHLY POLYMORPHIC MICROSATELLITE DNA MARKERS FOR U.S. SUGARCANE GERMPLASM EVALUATION AND VARIETY FINGERPRINTING

- (Abstract Only)Pan, Y.B., Comstock, J.C., Scheffler, B.E. 2005. Highly Polymorphic Microsatellite DNA Markers for U.S. Sugarcane Germplasm Evaluation and Variety Fingerprinting [abstract]. Guide of Plant and Animal Genome XIII. p. 36.Microsatellite DNA marker-assisted selection of Saccharum spontaneum cytoplasm-derived germplasm

- (Proceedings)Pan, Y.-B., Tew, T.L., Schnell, R.J., Viator, R.P., Veremis, J.C., Richard Jr, E.P., Grisham, M.P., White, W.H. 2004. Microsatellite DNA marker-assisted selection of Saccharum spontaneum cytoplasm-derived germplasm. In: Proceedings of International Symposium on Sustainable Sugarcane and Sugar Production Technology, November 29 - December 2, 2004, Nanning, China. p. 483-489.NEW SACCHARUM HYBRIDS IN S. SPONTANEUM CYTOPLASM DEVELOPED THROUGH A COMBINATION OF CONVENTIONAL AND MOLECULAR BREEDING APPROACHES

- (Peer Reviewed Journal)Pan, Y-B., Burner, D.M., Wei, Q., Cordeiro, G.M., Legendre, B.L., Henry, R.J. 2004. New Saccharum hybrids in S. spontaneum cytoplasm developed through a combination of conventional and molecular breeding approaches. Plant Genetic Resources: Characterization and Utilization. 2(2):131-139.APPLICATION OF HIGH-THROUGHPUT DNA MARKER TECHNOLOGY IN SUGARCANE BREEDING: PHASE I - NUCLEIC ACIDS EXTRACTION

- (Abstract Only)Pan, Y., Veremis, J.C., Scheffler, B.E., Tew, T.L., Grisham, M.P., White, W.H., Richard Jr, E.P. 2004. High-throughput application of the DNA marker technology in sugarcane breeding: Phase I - DNA extraction [abstract]. Journal of the American Society of Sugar Cane Technologists. 24:117.A Genetic Shift in the Predominant Virus Strain Causing Mosaic in Louisiana Sugarcane

- (Abstract Only)Grisham, M.P., Pan, Y. 2004. A Genetic Shift in the Predominant Virus Strain Causing Mosaic in Louisiana Sugarcane [abstract]. Phytopathology. 94(6):S36.Molecular genotyping of sugarcane clones with microsatellite DNA markers

- (Peer Reviewed Journal)Pan, Y.-B., Cordeiro, G.M., Richard Jr, E.P., Henry, R.J. 2003. Molecular genotyping of sugarcane clones with microsatellite DNA markers. Maydica. 48:319-329.REGISTRATION OF 'HOCP 96-540' SUGARCANE

- (Peer Reviewed Journal)Tew, T.L., White, W.H., Grisham, M.P., Dufrene Jr, E.O., Garrison, D.D., Veremis, J.C., Pan, Y.-B., Richard Jr, E.P., Legendre, B.L., Miller, J.D. 2005. Registration of 'HoCP 96-540' Sugarcane. Crop Science. 45:785-786.NEW SACCHARUM HYBRIDS IN S. SPONTANEUM CYTOPLASM SELECTED WITH RAPD AND MICROSATELLITE MARKERS

- (Abstract Only)Pan, Y., Burner, D.M., Wei, Q., Cordeiro, G.M., Legendre, B.L., Henry, R.J. 2004. New saccharum hybrids in s. spontaneum cytoplasm selected with RAPD and microsatellite markers [abstract]. Plant and Animal Genome Abstracts. P235:130.IDENTIFICATION OF VIRUS ISOLATES CAUSING MOSAIC OF SUGARCANE IN LOUSIANA

- (Abstract Only)Grisham, M.P., Pan, Y. 2003. Identification of virus isolates causing mosaic of sugarcane in Lousiana [abstract]. 8th International Congress on Plant Pathology, February 2-7, 2003, Christchurch, New Zealand. 2(23.31):308.An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR

- (Peer Reviewed Journal)Pan, Y.-B., Burner, D.M., Legendre, B.L., Grisham, M.P., White, W.H. 2004. An assessment of the genetic diversity within a collection of Saccharum spontaneum L. with RAPD-PCR. Genetic Resources and Crop Evolution. 51(8):895-903.A POTENTIAL NEW STRAIN OF SORGHUM MOSAIC VIRUS IN LOUISIANA

- (Abstract Only)Grisham, M.P., Pan, Y., Dufrene Jr, E.O. 2003. A potential new strain of sorghum mosaic virus in Louisiana [abstract]. Sugar Journal. 66(1):33.Variability of the sugarcane mosaic virus complex in Louisiana

- (Abstract Only)Microsatellite DNA Fingerprints of Sugarcane Clones and Their Implications in Sugarcane Breeding

- (Abstract Only)Pan, Y., Richard Jr, E.P. 2003. Microsatellite DNA Fingerprints of Sugarcane Clones and Their Implications in Sugarcane Breeding [abstract]. Sugar Journal. 66(1):27.Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm

- (Peer Reviewed Journal)Cordeiro, G.M., Pan, Y.-B., Henry, R.J. 2003. Sugarcane microsatellites for the assessment of genetic diversity in sugarcane germplasm. Plant Science. 165:181-189.Application of microsatellite and RAPD fingerprints in the Florida sugarcane variety program

- (Peer Reviewed Journal)Pan, Y.-B., Miller, J.D., Schnell, R.J., Richard Jr, E.P., Wei, Q. 2003. Application of microsatellite and RAPD fingerprints in the Florida sugarcane variety program. Sugar Cane International. March/April 2003:19-28.SELECTION OF DE NOVO SACCHARUM HYBRIDS WITH SACCHARUM SPONTANEUM CYTOPLASM USING MICROSATELLITE DNA MARKERS

- (Abstract Only)Pan, Y., Tew, T.L., Grisham, M.P., Richard Jr, E.P., White, W.H., Veremis, J.C. 2003. Selection of de novo saccharum hybrids with saccharum spontaneum cytoplasm using microsatellite DNA markers. 7th International Society of Breeding and Germplasm Workshop Abstract Book, May 5-9, 2003, Durban, South Africa. p. 17-18.APPLICATION OF MICROSATELLITE AND RAPD FINGERPRINTS IN THE FLORIDA SUGARCANE VARIETY PROGRAM

- (Abstract Only)Pan, Y., Miller, J.D., Schnell Ii, R.J., Richard Jr, E.P., Wei, Q. 2003. Application of microsatellite and RAPD fingerprints in the Florida sugarcane variety program [abstract]. Plant and Animal Genome Abstract XI Abstract Book. W 189. p. 43BOOK REVIEW COMMENTARY

- (Review Article)Pan, Y.-B. 2002. Book Review Commentary. Sugar Cane International: The Journal of Cane Agriculture. July/August Issue:10.A Shift in the Strains of Sorghum Mosaic Virus Causing Mosaic in Louisiana Sugarcane

- (Abstract Only)Grisham, M.P., Pan, Y. 2002. A Shift in the Strains of Sorghum Mosaic Virus Causing Mosaic in Louisiana Sugarcane [abstract]. Phytopathology. 92(6):532.MOLECULAR IDENTIFICATION OF VIRUS ISOLATES CAUSING MOSAIC IN LOUISIANA SUGARCANE

- (Abstract Only)Grisham, M.P., Pan, Y. 2002. Molecular identification of virus isolates causing mosaic in Louisiana sugarcane. Sugar Journal. 65(1):26-27.MONITORING MOSAIC

- (Trade Journal)Grisham, M.P., Pan, Y. 2002. Monitoring mosaic [trade journal]. Sugar Bulletin. 80(9):29-31.SELECTION OF INTERSPECIFIC SUGARCANE HYBRIDS USING MICROSATELLITE DNA MARKERS

- (Abstract Only)Pan, Y., Tew, T.L., Grisham, M.P., Richard Jr, E.P., White, W.H., Veremis, J.C. 2003. Selection of interspecific sugarcane hybrids using microsatellite DNA markers [abstract]. American Society of Sugar Cane Technologists. 23:103.DEVELOPING SPECIES-SPECIFIC DNA MARKERS TO ASSIST IN SUGARCANE BREEDING

- (Peer Reviewed Journal)Pan, Y., Burner, D.M., Wei, Q. 2001. Developing species-specific DNA markers to assist in sugarcane breeding. Proceedings of International Society of Sugar Cane Technologists Proceedings. 24:337-342.SEARCH FOR DNA MARKERS TO ASSIST SUGARCANE BREEDING

- (Abstract Only)Pan, Y., Burner, D.M., Legendre, B.L. 2000. Search for dna markers to assist sugarcane breeding [abstract]. Plant and Animal Genome VIII Abstract. W120:29.NUCLEOTIDE SEQUENCE POLYMORPHISMS AMONG THE 5S RRNA INTERGENIC SPACERS IN  SUGARCANE AND RELATED TAXA

- (Peer Reviewed Journal)Pan, Y., Burner, D.M., Legendre, B.L. Nucleotide sequence polymorphisms among the 5s rRNA intergenic spacers in  sugarcane and related taxa. Genetica. 108:285-295.POTENTIAL IMPACT OF BIOTECHNOLOGY ON SUGARCANE BREEDING

- (Abstract Only)ROLE OF CULTIVAR, CROP, INFECTION LEVEL, AND YEAR IN FIELD LOSSES OF       SUGARCANE MOSAIC

- (Abstract Only)CURRENT STATUS ON BIOTECHNOLOGY RESEARCH AT SUGARCANE RESEARCH UNIT, HOUMA LOUISIANA

- (Abstract Only)Pan, Y., Burner, D.M., Grisham, M.P., Legendre, B.L., Wei, Q. 2000. Current status on biotechnology research at Sugarcane Research Unit, Houma, Louisiana [abstract]. Sugar Y Azucar. 95(6):17.GENETIC DIVERSITY OF SACCHARUMSPONTANEUM ASSESSED WITH RAPDS

- (Abstract Only)BURNER, D.M., PAN, Y., LEGENDRE, B.L. 1999. GENETIC DIVERSITY OF SACCHARUMSPONTANEUM ASSESSED WITH RAPDS. AMERICAN SOCIETY OF AGRONOMY. 91:162.MARKER-ASSISTED SUGARCANE BREEDING

- (Abstract Only)Pan, Y., Legendre, B.L., Burner, D.M. 1999. Marker-assisted sugarcane breeding [abstract]. Sugar y Azycar. 94(6):27.A PROGRESS REPORT ON BIOTECHNOLOGY RESEARCH AT SUGARCANE RESEARCH UNIT,    HOUMA, LOUISIANA

- (Abstract Only)APPLICATION OF RAPD TECHNOLOGY TO SUGARCANE BREEDING AND SELECTION

- (Abstract Only)DEVELOPMENT OF POLYMERASE CHAIN REACTION PRIMERS HIGHLY SPECIFIC FOR       XANTHOMONAS ABILINEANS, THE CASUAL BACTERIUM OF SUGARCANE LEAF SCALD       DISEASE

- (Peer Reviewed Journal)DISTRIBUTION OF THE LEAF SCALD PATHOGEN IN INFECTED SUGARCANE STALKS

- (Peer Reviewed Journal)DETECTING SUGARCANE DISEASE PATHOGENS BY DNA BASED TECHNOLOGY

- (Proceedings)MOLECULAR MARKER-ASSISTED SUGARCANE BREEDING

- (Abstract Only)MOLECULAR MARKER-ASSISTED SUGARCANE BREEDING

- (Proceedings)Pan, Y., Burner, D.M., Legendre, B.L. 2000. Molecular marker-assisted sugarcane breeding. Proceedings of Inter-American Sugar Cane Seminars. 1:31-37.DNA-BASED MOLECULAR DIAGNOSTIC PROTOCOLS FOR SUGARCANE BACTERIAL DISEASES

- (Book / Chapter)SPECIES-SPECIFIC PCR MARKERS FOR SELECTION OF INTERSPECIFIC SUGARCANE      HYBRIDS

- (Abstract Only)DETECTING CLAVIBACTER XYLI SUBSP. XYLI BY TISSUE BLOT HYBRIDIZATION WITH   A POLYMERASE CHAIN REACTION-DERIVED DNA PROBE

- (Peer Reviewed Journal)SPECIES-SPECIFIC PCR MARKERS FOR SUGARCANE AND RELATED TAXA

- (Abstract Only)A POLYMERASE CHAIN REACTION PROTOCOL FOR THE DETECTION OF CLAVIBACTER XYLI SUBSP. XYLI,THE CASUAL BACTERIUM OF SUGARCANE RATOON STUNTING DISEASE

- (Peer Reviewed Journal)PCR PRIMERS HIGHLY SPECIFIC FOR XANTHOMONAS ALBILINEANS.

- (Abstract Only)DETECTION AND IDENTIFICATION OF CLAVIBACTER XYLI SUBSP. XYLI USING PCR     WITH A PAIR OF HIGHLY SPECIFIC PRIMERS.

- (Abstract Only)POLYMERASE CHAIN REACTION (PCR) PROTOCOLS FOR DETECTING THE BACTERIA THAT  CAUSE LEAF SCALD AND RATOON STUNTING DISEASES OF SUGARCANE.

- (Abstract Only)DISTRIBUTION OF THE LEAF SCALD PATHOGEN IN INFECTED SUGARCANE STALKS.

- (Abstract Only)DETECTING CLAVIBACTER XYLI SUBSP. XYLI USING TISSUE BLOT HYBRIDIZATION WITHA PCR-DERIVED DNA PROBE.

- (Abstract Only)GENETIC SIMILARITY OF NEW WORLD AND OLD WORLD SACCHARUM ASSESSED BY RAPD   ANALYSIS

- (Peer Reviewed Journal)CYTOLOGICAL AND MOLECULAR STUDIES OF SACCHARUM SPP. NATIVE TO NORTH        AMERICA

- (Abstract Only)
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