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                    U.S. DEPARTMENT OF AGRICULTURE
 Crop Production and Pest Control Research: West Lafayette, IN
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ARS Home Midwest Area West Lafayette, Indiana Crop Production and Pest Control Research People & Locations







Charles  Crane
                        Crop Production and Pest Control Research

                        




                        
                        Geneticist
                        Phone: (765) 494-3611
                        
                        
                        Fax: (765) 496-3452(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
                            **Publications**
                                                (Clicking on the reprint icon
                                                    Reprint Icon
                                                    will take you to the publication reprint.)Differential gene expression between viruliferous and non-viruliferous Schizaphis graminum (Rondani)
                                                        

- (Peer Reviewed Journal)Crane, Y.M., Crane, C.F., Schemerhorn, B.J. 2023. Differential gene expression between viruliferous and non-viruliferous Schizaphis graminum (Rondani). PLOS ONE. 18(11):e0294013. https://doi.org/10.1371/journal.pone.0294013.Tar Spot Disease Severity Influences Phyllosphere-Associated Bacterial and Fungal Microbiomes

- (Proceedings)Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. Tar Spot Disease Severity Influences Phyllosphere-Associated Bacterial and Fungal Microbiomes. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.New quantitative trait loci (QTL) for resistance to tar Spot in maize

- (Proceedings)Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. New quantitative trait loci (QTL) for resistance to tar Spot in maize. International Congress of Plant Pathology Abstracts and Proceedings. ABSTRACT.Genetic dissection using a nested-association mapping (NAM) population reveals quantitative trait loci (QTL) conferring resistance to Tar Spot in maize

- (Abstract Only)Singh, R., Crane, C.F., Shim, S., Telenko, D.E., Goodwin, S.B. 2023. Genetic dissection using a nested-association mapping (NAM) population reveals quantitative trait loci (QTL) conferring resistance to Tar Spot in maize. Maize Genetics Conference Abstracts. ABSTRACT.Molecular characterization of eliminated chromosomes in Hessian Fly (Mayetiola destructor (Say))
                                                        

- (Peer Reviewed Journal)Crane, Y.M., Crane, C.F., Cambron, S.E., Springmeyer, L.J., Schemerhorn, B.J. 2023. Molecular characterization of eliminated chromosomes in Hessian Fly (Mayetiola destructor (Say)). Chromosome Research (2023). 31(1). Article 3.  https://doi.org/10.1007/s10577-023-09718-8SLAG: A program for seeded local assembly in complex genomes
                                                        

- (Peer Reviewed Journal)Crane, C.E., Nemacheck, J.A., Subramanyam, C.F., Williams, S.N., Goodwin, S.B. 2022. SLAG: A program for seeded local assembly in complex genomes. Molecular Ecology Resources. 22:596–616. https://doi.org/10.1111/1755-0998.13580.Elucidating mechanisms of non-host resistance towards Septoria passerinii and Zymoseptoria tritici in wheat and barley

- (Abstract Only)Million, C.R., Crane, C.F., Goodwin, S.B. 2020. Elucidating mechanisms of non-host resistance towards Septoria passerinii and Zymoseptoria tritici in wheat and barley. Plant and Animal Genome Conference Proceedings. Jan 11-15, 2020, San Diego, CA.Holistic genotyping of Amplicon panels with SPAdes and Blastn

- (Abstract Only)Crane, C.F., Crane, Y.M. 2020. Holistic genotyping of Amplicon panels with SPAdes and Blastn. Plant and Animal Genome XXVIII Conference Proceedings. January 11-15, 2020, San Diego, CA.Relationship of secreted salivary protein variants to virulence in Hessian fly (Mayetiola destructor (Say))
                                                        

- (Peer Reviewed Journal)Crane, Y.M., Crane, C.F., Schemerhorn, B.J. 2019. Relationship of secreted salivary protein variants to virulence in Hessian fly (Mayetiola destructor (Say)). Advances in Entomology. 8: 15-33. https://doi.org/10.4236/ae.2020.81002.Megagametophyte differentiation in Zephyranthes drummondii D. Don and Zephyranthes chlorosolen (Herb.) D. Dietr. (Amaryllidaceae)
                                                        

- (Peer Reviewed Journal)Crane, C.F. 2019. Megagametophyte differentiation in Zephyranthes drummondii D. Don and Zephyranthes chlorosolen (Herb.) D. Dietr. (Amaryllidaceae). Caryologia. 72(4):105-119. https://doi.org/10.13128/caryologia-670.A multiplexing strategy for mesoscale targeted sequencing of populations
                                                        

- (Peer Reviewed Journal)Crane, Y.M., Crane, C.F., Sanmiguel, P., Schemerhorn, B.J. 2018. A multiplexing strategy for mesoscale targeted sequencing of populations. Academia Journal of Agricultural Research. 8(8):221-228. https://doi.org/10.15413/ajar.2018.0168.Mapping 1000000 markers with Flipper

- (Abstract Only)Crane, C.F. 2018. Mapping 1000000 markers with Flipper. Plant and Animal Genome Conference XXVI Proceedings. January, 13-17, 2018, San Diego, CA.Combating a global threat to a clonal crop: banana black sigatoka pathogen pseudocercospora fijiensis (synonym mycosphaerella fijiensis) genomes reveal clues for disease control

- (Peer Reviewed Journal)Arango Isaza, R., Diaz Trujillo, C., Dhillon, B., Aerts, A., Carlier, J., Crane, C.F., De Jong, T., De Vries, I., Goodwin, S.B. 2016. Combating a global threat to a clonal crop: banana black sigatoka pathogen pseudocercospora fijiensis (synonym mycosphaerella fijiensis) genomes reveal clues for disease control. PLoS Genetics. 12(8):e1005876. doi:10.1371/journal.pgen.1005876.Improvements to the Flipper Genetic Mapper

- (Abstract Only)Crane, C.F. 2016. Improvements to the Flipper Genetic Mapper. Plant and Animal Genome Conference XXIV Proceedings. January 8-13, 2016, San Diego, CA.Use of microsatellite and SNP markers to characterize biotypes in Hessian fly

- (Peer Reviewed Journal)Schemerhorn, B.J., Crane, Y.M., Cambron, S.E., Crane, C.F., Shukle, R.H. 2015. Use of microsatellite and SNP markers to characterize biotypes in Hessian fly. Journal of Insect Science. 15(1):158. doi: 10.1093/jisesa/iev138.The evolution of Hessian Fly from the Old World to the New World: evidence from molecular markers

- (Peer Reviewed Journal)A Perl script for targeted local genome assembly

- (Abstract Only)Crane, C.F., Nemacheck, J.A., Subramanyam, S., Williams, C.E. 2012. A Perl script for targeted local genome assembly. Plant and Animal Genome Conference Proceedings. PO981.Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

- (Peer Reviewed Journal)Goodwin, S.B., M'Barek, S., Dhillon, B., Wittenberg, A.J., Crane, C.F., Van Der Lee, T.J., Grimwood, J., Aerts, A., Antoniw, J., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Canto-Canche, B., Churchill, A., Conde-Ferraez, L., Cools, H., Coutinho, P.M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Foster, A.J., Hammond-Kosack, K., Hane, J., Henrissat, B., Killian, A., Koopmann, E., Kourmpetis, Y., Kuzniar, A., Lindquist, E., Lombard, V., Maliepaard, C., Martins, N., Mahrabi, R., Oliver, R., Ponomarenko, A., Rudd, J., Salamov, A., Schmutz, J., Schouten, H.J., Shapiro, H., Stergiopoulos, I., Torriani, S.F., Tu, H., De Vries, R.P., Wiebenga, A., Zwiers, L., Grigoriev, I.V., Kema, G.J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLoS Genetics. Available at: http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002070.The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana

- (Abstract Only)Kema, G., Goodwin, S.B., Van Der Lee, T., Dhillon, B., Arango, R., Crane, C.F., Diaz, C., Souza, M., Carlier, J., Schmutz, J., Grigoriew, I. 2010. The Draft Genome Sequence of Mycosphaerella fijiensis, the Black Sigatoka Pathogen of Banana. Meeting Proceedings.Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis

- (Peer Reviewed Journal)Dunkle, L.D., Crane, C.F., Goodwin, S.B. 2009. Development of Simple Sequence Repeat Markers from Expressed Sequence Tags of the Maize Gray Leaf Spot Pathogen, Cercospora Zea-Maydis. Molecular Ecology Resources. 9:1375-1379.Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola

- (Abstract Only)M'Barek, S.B., Van Der Lee, T.A., Wittenberg, A.H., Maliepaard, C., Crane, C.F., Dhillon, B., Goodwin, S.B., Schouten, H.J., Kema, G.H. 2009. Outstanding: the Dispensable Chromosomes of Mycosphaerella Graminicola. Fungal Genetics Conference Proceedings. 56:102Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-Maydis Identifing Novel Genes expressed during Vegetative, Infectious, & Reproductive Growth

- (Peer Reviewed Journal)Bluhm, B., Dhillon, B., Lindquist, E., Crane, C.F., Kema, G., Goodwin, S.B., Dunkle, L.D. 2008. Analyses of Expressed Sequence Tags from the Maize Foliar Pathogen Cercospora Zeae-maydis Identify Novel Genes Expressed during Vegetative, Infectious, & Reproductive Growth. Biomed Central (BMC) Genomics. 9:523.Patterned sequence in the transcriptome of vascular plants

- (Peer Reviewed Journal)Crane, C.F. 2007. Patterned sequence in the transcriptome of vascular plants. Biomed Central (BMC) Genomics [abstract]. Paper No. 173.Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis

- (Abstract Only)Crane, C.F., Quevillon, E., Goodwin, S.B. 2007. Characterization of Tandem Repeats and Repetitive Elements in the Genomes of Mycosphaerella graminicola and M. figiensis. Plant and Animal Genome VX Conference Abstracts.  Available: http://www.intl-pag.org/15/abstracts/PAG15_P03b_144.html.IDENTIFICATION AND GENETIC MAPPING OF HIGHLY POLYMORPHIC MICROSATELLITE LOCI FROM AN EST DATABASE OF THE SEPTORIA TRITICI BLOTCH PATHOGEN MYCOSPHAERELLA GRAMINICOLA

- (Peer Reviewed Journal)Goodwin, S.B., Van Der Lee, T., Cavaletto, J.R., Hekkert, B., Crane, C.F., Kema, G.H. 2006. Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the Septoria tritici blotch pathogen Mycosphaerella graminicola. Fungal Genetics and Biology. 44:398-414.Population Structure of Hessian fly, Mayetiola destructor (Say), in the Southeastern United States

- (Abstract Only)Morton, P.K., Crane, C.F., Schemerhorn, B.J. 2006. Population Structure of Hessian fly, Mayetiola destructor (Say), in the Southeastern United States. International Plant Resistance to Insects Workshop  Abstracts & Proceedings. p. 34.A NEAREST-NEIGHBORING-END ALGORITHM FOR GENETIC MAPPING

- (Peer Reviewed Journal)Crane, C.F., Crane, Y.M. 2005. A nearest-neighboring-end algorithm for genetic mapping. Bioinformatics. 21:1579-1591.REAL-TIME PCR ANALYSIS OF GENES EXPRESSED DURING WHEAT-MYCOSPHAERELLA GRAMINICOLA INTERACTIONS

- (Abstract Only)Adhikari, T., Balaji, B., Breeden, J.D., Crane, C.F., Anderson, J.M., Goodwin, S.B. 2004. Real-time PCR analysis of genes expressed during wheat-mycosphaerella graminicola interactions. Phytopathology. 94:S2-S3.A GENETIC MAP OF THE ITMI POPULATION USING THE NEAREST-NEIGHBORING-ENDS ALGORITHM

- (Abstract Only)FUNCTIONAL PATHOGENOMICS IN CEREALS

- (Abstract Only)Scofield, S.R., Brandt, A.S., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Lohret, T., Crasta, O. 2004. Functional pathogenomics in cereals (abstract). Plant Animal and Microbe Genome XII. Abstract No. P839.FUNCTIONAL PATHOGENOMICS IN CEREALS

- (Abstract Only)ANALYSIS OF THE WHEAT DEFENSE TRANSCRIPTOME

- (Proceedings)Scofield, S.R., Anderson, J.M., Crane, C.F., Goodwin, S.B., Ohm, H., Williams, C.E., Loret, T., Crasta, O. 2003. Analysis of the wheat defense transcriptome. Proceedings of the Tenth International Wheat Genetics Symposium, Paestum, Italy. 1:407-410.TRANSCRIPTION PROFILING OF WHEAT DEFENSE RESPONSES:  HESSIAN FLY VERSUS MICROBIAL PATHOGENS

- (Abstract Only)Williams, C.E., Goodwin, S.B., Ohm, H.W., Anderson, J.M., Crane, C.F., Scofield, S.R., Lohret, T.A., Crasta, O.R. 2003. Transcription profiling of wheat defense responses:  hessian fly versus microbial pathogens. In: Proceedings of the Entomological Society of America Regional Meetings. Entomological Society of American-North Central Branch, March 23-26, 2003, Madison, Wisconsin. Available: http://esa.ent.iastate.edu/confreg/?gridaction=viewonepresentation&year=2003 &presnum=083


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