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Mark T. Jones Curriculum Vitae 1 

GENERAL University Address: Home Address: 

INFORMATION 302 Whittemore Hall 2906 Wakefield Drive

 ECE Department Blacksburg VA 24060 

 Virginia Tech (540) 921-7477 (cell) 

 Blacksburg VA 24061-0111 marktjones25@me.com 

 (540) 231-8849 

 mtj@vt.edu

 US Citizen Born March 15, 1965 in Newport News, VA 

 Residence history: Newport News VA; Redlands CA; Dallas TX; 

Blacksburg VA; Clemson SC; Durham NC; Chicago IL; 

Knoxville TN; Blacksburg VA 

EMPLOYMENT Professor, Department of Electrical and Computer Engineering, Virginia Tech, 

EXPERIENCE 8/97-present (since 6/07 at the rank of Full Professor). 

Chief Technology Advisor, Ocean Tomo, LLC, August 2013 to December 2013. 

Professor, Department of Computer Science, University of Tennessee, 8/93-7/97 

(at the rank of Assistant Professor). 

Assistant Computer Scientist, Mathematics and Computer Science Division, 

Argonne National Laboratory, Chicago, IL, 6/90 to 7/93. 

EDUCATION Ph.D., Duke University, Computer Science, May 1990. 

 

B.S., Clemson University, Computer Science, summa cum laude, May 1986. 

RECOGNITION Virginia Bioinformatics Faculty Fellow 

AND AWARDS 1st prize and Honorable Mention at AOL-CIT Research Day 

 Virginia Tech College of Engineering Dean’s List for Teaching 

 NSF CAREER Award

 University of Tennessee Science Alliance Award 

 Atanasoff Best Paper Award 

 Gordon Bell Prize 

 Von Neumann Fellowship 

 R. F. Poole Scholarship 

 National Merit Scholar 

 

EXPERT Blackboard v. Desire2Learn

TESTIMONY United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving Internet-based educational 

software employing role-based access control 

 Testified: Jury trial (infringement and validity), injunction hearing, 

contempt hearing, and deposition (4 times) 

TechRadium v. Blackboard 

United States District Court for the Eastern District of Virginia 

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Mark T. Jones Curriculum Vitae 2 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving network-based emergency 

notification systems 

Testified: Preliminary injunction hearing and deposition 

Computer Associates v. Digex

Circuit Court for Prince George’s County Maryland 

Overview: Contract dispute involving enterprise management systems 

Testified: Jury trial and deposition 

Computer Associates v. Retired Persons Services 

United States District Court for the Eastern District of Virginia 

Overview: Contract dispute involving enterprise management systems 

Testified: Deposition 

DVSI v. University of Phoenix and Walden University 

United States District Court for the Eastern District of Virginia 

Overview: Patent infringement case involving network-based educational 

software employing digital rights management 

Testified: Deposition (3 days) 

VirnetX v. Microsoft 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving VPN software in Microsoft 

Windows and Microsoft’s Unified Communications software 

Testified: Jury trial (infringement and validity) and deposition (3 days) 

TechRadium v. Twitter

United States District Court for the Southern District of Texas 

Overview: Patent infringement case involving network-based notification 

systems 

Testimony: Deposition 

 Bedrock Computer Tech v. Softlayer et al 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving data structures in the Linux 

operating system’s network stack 

Testimony: Jury trial v. Google (infringement and validity), Jury trial v. Yahoo 

(infringement and validity) and deposition (3 days) 

CEATS v. Continental Airlines et al 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving Web-based interactive seat maps 

Testimony: Jury trial (infringement and validity) and deposition (2 days) 

VirnetX v. Cisco et al 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving secure communications, VPNs, 

and Voice-over-IP

Testimony: Jury trial v. Apple (infringement and validity), Jury trial v. Cisco 

(validity), and deposition (3 days), 2nd jury trial v. Apple (infringement), 3rd jury 

trial v. Apple (infringement), 4th jury trial v. Apple (infringement) 

Summit6 v. Research In Motion et al 

United States District Court for the Northern District of Texas 

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Mark T. Jones Curriculum Vitae 3 

Overview: Patent infringement case involving network-based photo uploading 

tools on smartphones and web browsers 

Testimony: Jury trial v. Samsung (infringement and validity) and deposition (3 

days) 

Ericsson v. Samsung 

International Trade Commission 

Overview: Patent infringement case involving Java technology and touchscreen 

technology on smartphones 

Testimony: Deposition 

AT Engine Controls LTD. v. Goodrich Corp and Goodrich Pump & Engine 

Control Systems, Inc. 

United States District Court for the District of Connecticut 

Overview: Trade secret case involving an embedded computing system design 

for helicopter engine control 

Testimony: Deposition 

SmartFlash LLC. v. Apple, et. al. 

SmartFlash LLC. v. Samsung, et. al. 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving digital rights management and 

content distribution 

Testimony: Jury trial v. Apple (infringement and validity) and deposition (4 

days) 

Unwired Planet v. Apple 

United States District Court for the Northern District of California 

Overview: Patent infringement case involving several technologies related to 

mobile devices 

Testimony: Deposition (3 days); technology tutorial presentation to the Court 

Facebook v. Rembrandt Social Media 

Patent Trial and Appeal Board 

Overview: Validity of a patent in the area of a web-based diary system 

Testimony: Deposition 

Motorola Mobility v. Intellectual Ventures 

Patent Trial and Appeal Board 

Overview: Validity of a patent in the area transmitting and browsing 

preformatted information 

Testimony: Deposition 

Summit6 v. Apple et al 

United States District Court for the Northern District of Texas 

Overview: Patent infringement case involving network-based photo uploading 

tools on smartphones and web browsers 

Testimony: Deposition 

EMC v. Pure Storage et al 

United States District Court for the District of Delaware 

Overview: Patent infringement case involving memory systems 

Testimony: Deposition and jury trial 

Parallel Networks v. IBM

United States District Court for the District of Delaware 

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Mark T. Jones Curriculum Vitae 4 

Overview: Patent infringement case involving web servers and load balancing 

Testimony: Deposition (2 days) 

Parallel Networks v. Microsoft 

United States District Court for the District of Delaware 

Overview: Patent infringement case involving web servers and load balancing 

Testimony: Deposition (2 days) and jury trial 

Microsoft and IBM v. Parallel Networks 

Patent Trial and Appeal Board 

Overview: Validity of a patent related to web servers and load balancing 

Testimony: Deposition 

adidas v. UnderArmour 

United States District Court for the District of Delaware 

Overview: Patent infringement case involving fitness tracking 

Testimony: Deposition 

BMC Software v. ServiceNow 

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving enterprise management software

Testimony: Deposition 

Ericsson v. TCL

United States District Court for the Eastern District of Texas 

Overview: Patent infringement case involving Java technology and security on 

smartphones 

Testimony: Deposition (3 days) and jury trial 

REM v. Square 

United States District Court for the Eastern District of Missouri 

Overview: Intellectual property case involving credit card readers for 

smartphones 

Testimony: Deposition 

AARC v. Chrysler et al 

United States District Court for the District of Columbia 

Overview: Intellectual property case involving car infotainment systems 

Testimony: Deposition 

Spex Technologies v. Apricorn 

United States District Court for the Central District of California 

Overview: Patent infringement case involving secure memory devices 

Testimony: Deposition 

United States Conference of Mayors v. Great-West Life Annuity Insurance Co. 

United States District Court for the District of Columbia 

Overview: Contract dispute 

Testimony: Deposition and jury trial 

Tecsec, Inc. v. Adobe Systems Inc. (listed as IBM, et.al.). 

United States District Court for the Eastern District of Virginia 

Overview: Patent infringement case involving secure object technology 

Testimony: Deposition 

Egenera, Inc. v. Cisco Systems, Inc. 

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Mark T. Jones Curriculum Vitae 5 

United States District Court for the District of Massachusetts 

Overview: Patent infringement case involving an architecture for a processing 

platform 

Testimony: Deposition 

 

PUBLICATIONS

 Journals 

M. Blake, R. Younes, D. Jacob, T. Martin, and M. Jones, “A User-Independent 

and Sensor -Tolerant Wearable Activity Classifier,” IEEE Computer, v. 48, No. 

10, October 2015, pp. 64-71. 

Hawkins JB, Jones MT, Plassmann PE, Thorley-Lawson DA, “Chemotaxis in 

Densely Populated Tissue Determines Germinal Center Anatomy and Cell 

Motility: A New Paradigm for the Development of Complex Tissues,” PLoS 

ONE 6(12): e27650. doi:10.1371/journal.pone.0027650, 2011. 

Z. Nakad, M. Jones, T. Martin, and W. Fawaz, "Networking in E-textiles," 

Computer Communications, vol. 33, issue 6, April 2010, pp. 655-666. 

Jian Liu, T. E. Lockhart, M. Jones, and T. Martin, “Local Dynamic Stability 

Assessment of Motion Impaired Elderly Using Electronic Textile Pants,” IEEE 

Transactions on Automation Science and Engineering, vol. 5, issue 4, pp. 696-

702, October 2008. 

Madhup Chandra, Mark Jones, and Thomas Martin, “E-Textiles for 

Autonomous Location Awareness,” IEEE Transactions on Mobile Computing, 

vol. 6, issue 4, pp. 367-380, April 2007. 

Zahi Nakad, Mark Jones, Thomas Martin, and Ravi Shenoy, “Using Electronic 

Textiles to Implement an Acoustic Beamforming Array: A Case Study,”

Pervasive and Mobile Computing Journal, vol. 3, issue 5, pp. 581-606, October 

2007. 

Mark Jones, Zahi Nakad, Paul Plassmann, Yanhua Yi, “The Use of 

Configurable Computing for Computational Kernels in Scientific Simulations,” 

Intern. Journal of Future Generation Computer Systems, 22 (1-2), pp. 67-79 

(2006). 

J.-R. Cheng, M. T. Jones, and P. E. Plassmann, “A Portable Software 

Architecture for Mesh-Independent Particle Tracking Algorithms,” Journal of 

Parallel Algorithms and Applications, 19 (2-3), 145-161, 2004. 

Jae H. Park, Gary Friedman and Mark Jones, “Geographical Feature Sensitive 

Sensor Placement,” Journal of Parallel and Distributed Computing, volume 64, 

2004, pp. 815-825. 

D. Marculescu, R. Marculescu, N. Zamora, P. Stanley-Marbell, P. K. Khosla, S. 

Park, S. Jayaraman, S. Jung, C. Lauterbach, W. Weber, T. Kirstein, D. Cottet, J. 

Grzyb, G. Tröster, M. Jones, T. Martin, Z. Nakad, “Electronic Textiles: A 

Platform for Pervasive Computing,” Proceedings of the IEEE, volume 91, 

number 12, December 2003, pp. 1995-2018. 

Kiran Puttegowda, David I. Lehn, Jae H. Park, P. Athanas and Mark Jones, 

“Context Switching in a Run-Time Reconfigurable System,” Journal of 

Supercomputing, Kluwer Academic Press, June 2003, pp 239-257. 

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Mark T. Jones Curriculum Vitae 6 

Mark Jones, Shashank Mehrotra, and Jae Hong Park, “Tasking Distributed 

Sensor Networks,” Journal of High Performance Computing Applications, Vol 

16, pp. 243-257, 2002. 

Eloise Coupey and Mark Jones, “A Script-Based Approach for E-Commerce 

Applications,” Quarterly Journal of Electronic Commerce, to appear.

Eloise Coupey and Mark Jones, “Decision Making in the Electronic Commerce 

Environment: Issues and Approaches for Tool Development,” Quarterly Journal 

of Electronic Commerce, Vol 1, pp. 215-228, 2000.

Mark Jones and Karthik Ramachandran, “Unstructured Mesh Computations on 

CCMs,” Advances in Engineering Software, Vol. 31, pp. 571-580, 2000.

Mark Jones and Paul Plassmann, “Unstructured Mesh Computations on 

Networks of Workstations,” Computer-Aided Civil and Infrastructure 

Engineering, Vol. 15, 196-208, 2000. 

Lori Freitag, Mark Jones, and Paul Plassmann, “A Parallel Algorithm for Mesh 

Smoothing,” SIAM Journal on Scientific Computing, Vol 20, pp 2023-2040, 

1999. 

William Barry, Mark Jones, and Paul Plassmann, “Parallel Adaptive Mesh 

Refinement Techniques for Plasticity Problems,” Advances in Engineering 

Software, Vol. 19, pp. 217-229, 1998. 

Mark Jones and Paul Plassmann, “Adaptive Refinement of Unstructured FiniteElement Meshes,” Journal of Finite Elements in Analysis and Design, Vol. 25, 

pp. 41-60, 1997. 

Mark Jones and Paul Plassmann, “Parallel Algorithms for Adaptive Mesh 

Refinement,” SIAM Journal of Scientific Computing, Vol. 18, pp. 686-708, 

1997. 

Robert Gjertsen, Mark Jones, and Paul Plassmann, “Parallel Heuristics for 

Improved, Balanced Graph Colorings,” Journal of Parallel and Distributed 

Computing, Vol. 37, pp. 171-186, 1996. 

Mark Jones and Daniel Szyld, “Two-stage Multisplitting Methods with 

Overlapping Blocks,'' Numerical Linear Algebra with Applications, Vol. 3, pp. 

113-124, 1996. 

Mark Jones and Paul Plassmann, “An Improved Incomplete Cholesky 

Factorization,” ACM Trans. on Mathematical Software, Vol. 21, pp. 5-17, 1995. 

Mark Jones and Paul Plassmann, “Algorithm 740: Fortran Subroutines to 

Compute Improved Incomplete Cholesky Factorizations,” ACM Trans. on 

Mathematical Software, Vol. 21, pp. 18-19, 1995. 

Mark Jones and Paul Plassmann, “Results for Parallel Unstructured Mesh 

Computations,” Computing Systems in Engineering, Vol. 5, pp. 297-309, 1994. 

Mark Jones and Paul Plassmann, “Scalable Iterative Solution of Sparse Linear 

Systems,” Parallel Computing, Vol. 20, pp. 753-773, 1994. 

Mark Jones and Merrell Patrick, “Factoring Indefinite Matrices on HighPerformance Architectures,” SIAM Journal on Matrix Analysis and 

Applications, Vol. 15, pp. 273-283, 1994. 

Mark Jones and Paul Plassmann, “Computation of Equilibrium Vortex 

Structures for Type-II Superconductors,” Int. J. Supercomputing Applications, 

Vol.7.2, pp. 129-143, 1993. 

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Mark T. Jones Curriculum Vitae 7 

Mark Jones and Paul Plassmann, “A Parallel Graph Coloring Heuristic,” SIAM 

J. on Scientific and Statistical Computing, Vol. 14, pp. 654-669, 1993. 

Mark Jones and Merrell Patrick, “Bunch-Kaufman Factorization for Real 

Symmetric Indefinite Banded Matrices, SIAM Journal of Matrix Analysis and 

Applications, Vol. 14, pp. 553-559, 1993. 

Mark Jones and Merrell Patrick, “The Lanczos Algorithm for the Generalized 

Symmetric Eigenproblem on Shared-Memory Architectures,” Applied 

Numerical Mathematics, Vol. 12, pp. 377-389, 1993. 

Daniel Szyld and Mark Jones, “Two-stage and Multi-splitting Methods for the 

Parallel Solution of Linear Systems,” SIAM Journal of Matrix Analysis and 

Applications, Vol.13, pp. 671-679, 1992.

Conferences (refereed) 

R. Younes, T. Martin, and M. Jones, “Activity Classification at a Higher Level: 

What to Do After the Classifier Does Its Best?” Proceedings of the International 

Symposium on Wearable Computers, Osaka, Japan, September 2015, pp. 83-86. 

Joo Hong Lee, Mark T. Jones, and Paul E. Plassmann, "Scalable Solution of 

Radiative Heat Transfer Problems by the Photon Monte Carlo Algorithm on 

Hybrid Computing Architectures," Proceedings of the 2012 International 

Conference on Parallel and Distributed Processing Techniques and Applications 

(PDPTA'12: July 16-19, 2012, USA), Volume 1, pp. 67-75. 

Joo Hong Lee, Mark T. Jones, Paul E. Plassmann, "A Hybrid Software 

Framework for the GPU Acceleration of Multi-Threaded Monte Carlo 

Applications,", Proceedings of the 2010 International Conference on Scientific 

Computing (CSC'11: July 18-21, 2011, USA), pp. 70-76. 

Joo Hong Lee, Mark T. Jones, Paul E. Plassmann, “An Efficient Shared 

Memory Programming Model for Biological Systems Simulation”, 2010 

International Conference on Parallel and Distributed Processing Techniques and 

Applications, July 12-15, 2010, pp. 315-319. 

Joo Hong Lee, Mark T. Jones, Paul E. Plassmann, “A Scalable Distributed 

Memory Programming Model for Large-Scale Biological Systems Simulation”, 

2010 International Conference on Scientific Computing, July 12-15, 2010, pp. 

251-256. 

Joo Hong Lee, Mark T. Jones, Paul E. Plassmann, “A Hybrid Parallel 

Programming Model for Large-Scale Biological Systems Simulation”, 

Proceedings of Para 2010, State of the Art in Scientific and Parallel Computing, 

June 6-9, 2010. 

M. Quirk, T. Martin, and M. Jones, "Inclusion of Fabric Properties in the ETextile Design Process," Proc. 13th Int'l Symp. Wearable Computers (ISWC 

09), IEEE CS Press, 2009, pp. 34–40. 

Tom Martin, Mark Jones, Justin Chong, Meghan Quirk, Kara Baumann, Leah 

Passauer, " Design and Implementation of an Electronic Textile Jumpsuit," 

Proc. 13th Int'l Symp. Wearable Computers (ISWC 09), IEEE CS Press, 2009, 

pp. 157-158. 

M. Shelburne, C. Patterson, P. Athanas, M. Jones, B. Martin, and R. Fong, 

“Metawire: Using FPGA Configuration Circuitry to Emulate a Network-onChip”, Field Programmable Logic and Applications, September 2008, pp. 257-

262. 

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M. Jones, T. Martin, and B. Sawyer, “An Architecture for Electronic Textiles”, 

Proceedings of the ICST Third International Conference on Body Area 

Networks, 2008, Article 24, 4 pages. 

David Graumann, Giuseppe Raffa, Meghan Quirk, Braden Sawyer, Justin 

Chong, Mark Jones, Thomas Martin, “Large Surface Area Electronic Textiles 

for Ubiquitous Computing: A Systems Approach”, MobiQuitous ’07, August 

2007, pp. 1-8. 

George Eichinger, Tom Martin, and Mark Jones, “From Circuit to Sewing in 

One Click,” ISWC 2007. 

J. Edmison, D. Lehn, M. Jones, and T. Martin, An E-Textile Based Automatic 

Activity Diary for Medical Annotation and Analysis, 2006 Workshop on Body 

Sensor Networks, April 2006, pp. 131-134. 

C. Einsmann, M. Quirk, B. Muzal, B. Venkatramani, T. Martin, and M. Jones, 

“Modeling a Wearable Full-body Motion Capture System,” Proceedings of the 

2005 IEEE International Symposium on Wearable Computers (ISWC), October 

2005, pp. 144-151. 

J. Edmison, D. Lehn, M. Jones, and T. Martin, “Users’ Perceptions of an 

Automatic Activity Diary for Medical Annotation and Analysis,” Proceedings of 

the 2005 IEEE International Symposium on Wearable Computers (ISWC), 

October 2005, pp. 192-193. 

M. Chandra, M. Jones, and T. Martin, “E-Textiles for Autonomous Location 

Awareness,” Proceedings of the 2004 International Symposium on Wearable 

Computers, Arlington, VA, Oct. 31-Nov. 3, 2004, pp. 48-55. 

Zahi Nakad, Mark Jones, and Tom Martin, “Fault Tolerant Networks for 

Electronic Textiles,” CIC 2004, Las Vegas, June 2004, pp. 100-106. 

Zafer Gurdal, Tom Hartka, Mark Jones, and Sun Wook Kim, “A Reconfigurable 

Approach to Structural Engineering Design Computations,” ERSA 2004, Las 

Vegas, June 2004. 

Jones, Mark T., and Eloise Coupey, "An Agent-based Simulation Prototype for 

Evaluating Health Behavior Interventions," METMBS 2004, Las Vegas, June 

2004. 

Thomas Martin, Mark Jones, Joshua Edmison, Tanwir Sheikh, and Zahi Nakad, 

“Modeling and Simulating E-Textile Applications Proceedings of the ACM 

Conference on Languages, Compilers, and Tools for Embedded Systems, June 

11-13, 2004, pp. 10-19. 

Lehn, D., C. Neely, K. Schoonover, T. Martin, and M. Jones, "e-TAGS: eTextile Attached Gadgets." Communication Networks and Distributed Systems 

Modeling and Simulation Conference, January 2004. 

M. Abdalla, S. W. Kim, Z. Gürdal, and M. T. Jones, "Multigrid Accelerated 

Cellular Automata for Design Optimization of Continuum Structures: A 1-D 

Implementation", 45th AIAA/ASME/ASCE/AHS/ASC Structures, Structural 

Dynamics & Materials Conference, April 2004. 

Zahi Nakad, Mark Jones, and Tom Martin, “Communication in Electronic 

Textile Systems,” 2003 International Conference on Communications in 

Computing (CIC 2003), pp. 37-43. 

Mark Jones, Paul Plassmann, Zahi Nakad, and Yanhua Yi, “The Use of 

Configurable Computing in Scientific Simulations,” 2003 International 

Conference on Parallel and Distributed Processing Techniques and 

Applications (PDPTA’03), pp. 520-524. 

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Mark Jones, Mukta Nandwani, Jae Park, Paul Plassmann, and Yanhua Yi, 

“Examining the Communication Requirements of Remote Scientific 

Visualization,” 2003 International Conference on Communications in 

Computing (CIC 2003), pp. 31-36. 

T. Martin, M. Jones, J. Edmison, and R. Shenoy, "Towards a Design Framework 

for Wearable Electronic Textiles," International Society for Wearable 

Computers 2003, pp. 190-199.

M. Jones., T. Martin, Z. Nakad, R. Shenoy, T. Sheikh, D. Lehn, and J. Edmison, 

"Analyzing the Use of E-textiles to Improve Application Performance," IEEE 

Vehicular Technology Conference 2003, Symposium on Wireless Ad hoc, 

Sensor, and Wearable Networks. 

Mark Jones, Tom Martin, and Zahi Nakad, “A Service Backplane for eTextiles,” MAMSET 2002: Proc. Workshop on Modeling, Analysis and 

Middleware Support for Electronic Textiles, 6 October 2002, pp. 15-22. 

J. Edmison, M. Jones, Z. Nakad and T. Martin "Using piezoelectric materials for 

wearable electronic textiles," Wearable Computers, 2002. (ISWC 2002). 

Proceedings. Sixth International Symposium on pp. 41-48, 2002. 

Mark Jones, Lucas Scharf, Jon Scott, Christian Twaddle, Matthew Yaconis, 

Kuan Yao, Peter Athanas, and Brian Schott, “Implementing an API for 

Distributed Adaptive Computing Systems,” Proceedings of IEEE Symposium on 

Field-Programmable Custom Computing Machines, Napa, CA, April, 1999). 

Jason Hess, David Lee, Scott Harper, Peter Athanas, and Mark Jones, 

“Implementation of a Prototype Reconfigurable Router,” Proceedings of IEEE 

Symposium on Field-Programmable Custom Computing Machines, Napa, CA, 

April, 1999, to appear 7 pages). 

David Lee, Mark Jones, Scott Midkiff, and Peter Athanas, “Towards Active 

Hardware,” Lecture Notes in Computer Science 1653, Springer-Verlag, pp. 180-

187, 1999. 

Lori Freitag, Mark Jones and Paul Plassmann, “The Scalability of Mesh 

Improvement Algorithms,” The IMA Volumes in Mathematics and its 

Applications, Vol. 105, pp. 185-211, 1998. 

Lori Freitag, Mark Jones, and Paul Plassmann, “An Efficient Parallel Algorithm 

for Mesh Smoothing,” Proceedings of the 4th International Meshing 

Roundtable, Albuquerque, NM, pp. 47-58, 1995. 

Mark Jones and Paul Plassmann, “The efficient parallel iterative solution of 

large sparse linear systems,” The IMA Volumes in Mathematics and its 

Applications, Vol. 56, pp. 229-245, 1993. 

Mark Jones and Paul Plassmann, “Solution of Large, Sparse Systems of Linear 

Equations in Massively Parallel Applications,” Supercomputing '92 

Proceedings, IEEE Computer Society, pp. 551-560, 1992. 

Mark Jones, Merrell Patrick, and Robert Voigt, “A Language Comparison for 

Scientific Computing on MIMD Architectures,” Proceedings of the IFIP 

Working Conference: Aspects of Computation on Asynchronous Parallel 

Processors, M. H. Wright (Editor), Elsevier Science Publishers B. V. (NorthHolland), IFIP, pp. 55-67, 1989. 

Book Chapters 

R. Younes, K. Hines, J. Forsyth, J. Dennis, T. Martin, and M. Jones, “The 

design of smart garments for motion capture and activity classification,” Chapter 

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Mark T. Jones Curriculum Vitae 10 

27 in Smart Textiles and Their Applications, V. Koncar (editor), Woodhead 

Publishing, Duxford, UK, 2016, pp. 627-655. 

M.T. Jones and T.L. Martin, “Hardware and Software Architectures for 

Electronic Textiles,” a chapter in “Smart Clothing: Technology and 

Applications”, ed. Gilsoo Cho, 2010, pp. 135-152. 

Other

J. Edmison, M. Jones, T. Lockhart, and T. Martin, "An E-Textile System for 

Motion Analysis," Wearable eHealth Systems for Personalised Health 

Management: State of the Art and Future Challenges, Studies in Health 

Technology and Informatics, vol. 108, August 2004, pp. 292-301 

Eloise Coupey and Mark Jones, Developing Dynamic Decision Support: 

Opportunities, Issues and Approaches, Twenty-Third Annual International 

Computer Software and Applications Conference, October 1999. 

Mark Jones, Michael Langston, and Padma Raghavan, “Tools for Mapping 

Applications to CCMs,” Proceedings of SPIE: Configurable Computing: 

Technology and Applications, Boston, MA, SPIE, pp. 72-80, Nov. 1998. 

Lori Freitag, Mark Jones, and Paul Plassmann, “Mesh Component Design and 

Implementation within SUMAA3d,” Proceedings of SIAM Workshop on Object 

Oriented Methods for Inter-operable Scientific and Engineering Computing, 

SIAM Publications, to appear (page number/total unknown until typesetting). 

Lori Freitag, Mark Jones, and Paul Plassmann, “A Parallel Algorithm for Mesh 

Smoothing,” Proceedings of the Eighth SIAM Conference on Parallel 

Processing for Scientific Computing, Minneapolis, MN, March 1997. 

Lori Freitag, Mark Jones, and Paul Plassmann, “Parallel Adaptive Mesh 

Refinement with the SUMAA3d Project,” Proceedings of the ICASE/LaRC 

Workshop on Adaptive Grid Methods, 1995. 

Lori Freitag, Mark Jones, and Paul Plassmann, “Parallel Algorithms for 

Unstructured Mesh Computation,” Proceedings of Fifth SIAM Applied Linear 

Algebra Conference, SIAM Publications, pp. 123-127, 1994. 

Mark Jones and Paul Plassmann, “Parallel Algorithms for the Adaptive 

Refinement and Partitioning of Unstructured Meshes,” Proceedings of the 

Scalable High-Performance Computing Conference, IEEE, Ed. Dongarra and 

Walker, pp. 478-485, 1994. 

Lori Freitag, Mark Jones, and Paul Plassmann, “New Techniques for Parallel 

Simulation of High-Temperature Superconductors,” Proceedings of the Scalable 

High-Performance Computing Conference, IEEE, Ed. Dongarra and Walker, pp. 

726-733, 1994. 

Lori Freitag, Mark Jones, and Paul Plassmann , “New Advances in the Modeling 

of High-Temperature Superconductors,” Proceedings of the 1994 International 

Simulation Conference – Grand Challenges in Computer Simulation, The 

Society for Computer Simulation, pp. 208-213, 1994. 

Mark Jones and Paul Plassmann, “Software for the Generalized Eigenproblem 

on Distributed Memory Architectures,” Proceedings of the Lanczos Centenary 

Conference, Ed. Chu, et. al., pp. 322-325, 1994. 

Lori Freitag, J. Garner, Mark Jones, Paul Plassmann, “Recent Computational 

Results on the Equilibrium Vortex Configurations on Type-II Superconductors,” 

Proceedings of the Second DELTA Applications Workshop, Ed. P. Messina, pp. 

93-98, March 1993. 

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Tom Canfield, Mark Jones, Paul Plassmann, and Michael Tang, “Modeling 

Piezoelectric Crystals on the Intel DELTA,” Proceedings of the Sixth SIAM 

Conference on Parallel Processing for Scientific Computing, pp. 156-159, 1993. 

Mark Jones and Paul Plassmann, “Recent Results in the Modeling of Type-II 

Superconductors on Massively Parallel Computers,” Proceedings of the Sixth 

SIAM Conference on Parallel Processing for Scientific Computing, pp. 147-151, 

1993. 

Mark Jones and Paul Plassmann, “Parallel Solution of Unstructured, Sparse 

Systems of Linear Equations,” Proceedings of the Sixth SIAM Conference on 

Parallel Processing for Scientific Computing, pp. 471-475, 1993. 

Tom Canfield, Mark Jones, Paul Plassmann, and Michael Tang, “Thermal 

Effects on the Frequency Response of Piezoelectric Crystals,” New Methods in 

Transient Analysis, Eds. P. Smolinksi, W. K. Liu, G. Hulbert, and K. Tamma, 

PVP-Vol. 246 and AMD-Vol. 143, pp. 103-108, ASME, New York, 1992. 

Mark Jones and Paul Plassmann, “The Effect of Many Color Orderings on the 

Convergence of Iterative Methods,” Proceedings of the Copper Mountain 

Conference on Iterative Methods, April 1992. 

Mark Jones and Paul Plassmann, “Modeling piezoelectric crystals on the Intel 

DELTA,” Proceedings of the Intel DELTA Applications Workshop, Cal Tech, 

pp. 97-105, 1992. 

 

RESEARCH GRANTS NASA, “Phase II: Integrated Sensors for the Evaluation of Structural Integrity of 

Inflatable Habitats,” with NanoSonic, $180,000, 9/25/17-9/24/19. 

NSF, “SCH: INT: Collaborative Research: Smart Wearable Systems to Support 

and Measure Movement in Children With and Without Mobility Impairments,” 

$326,658, 10/1/17-9/30/21. 

NASA, “Integrated Sensors for the Evaluation of Structural Integrity of 

Inflatable Habitats,” with NanoSonic, $35,000, 9/1/2016-8/31/17. 

NSF, “SHB: Small: Collaborative Research: Electronic textiles for ambulatory 

health monitoring,” $306,083, 7/1/2011-6/30/2014. 

DARPA, “RECE,” With BBN, $30,000, 4/16/09-10/16/09. 

NSF, “Investigating a Novel Embedded Processor Architecture for Electonic 

Textiles in Wearable and Pervasive Computing,” $220,000, 12/1/08-11/30/10. 

NSF, “Fundamental Algorithms to Enable the Simulation of Multi-Scale 

Biological Systems,” $200,000, 9/1/07-8/31/10. 

AFRL, “Phase II: Amorphous Soft-Core Processor for Hardware Anti-Tamper,” 

~$230,000, 11/1/06-10/31/08. 

Intel, “E-Textile Rug for Gait Analysis, People Tracking and Emergency 

Directions,” $15,000, 6/1/06-12/31/06. 

Carilion, “Quantitative Measurement and Modeling of Early Events in Influenza 

Pathogenesis,” $20,000, 7/1/05-6/30/06. 

AFRL, “Phase I: Wearable Computer for Enhanced Situation Awareness,” 

$30,000, 5/1/06-1/1/07. 

AFRL, “Phase I: Amorphous Soft-Core Processor for Hardware Anti-Tamper,” 

$35,000, 1/1/06-11/1/06. 

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MDA, “Phase I: Secure Software Platform for Real-Time Software AntiTamper,” $29,994, 6/1/06-11/1/06. 

National Science Foundation (NSF), “CRI”, (e-textiles equipment), ~$80,000, 

8/05-7/07. 

Harris Corporation, “Exploiting the Reconfigurability of a Software-Defined 

Radio Platform,” $161,070, 9/1/05-6/30/06. 

DARPA, “Phase I: Technology for Trusted Circuits,” $31,000, 3/1/05-9/15/05. 

Harris Corporation, “Partial Reconfiguration Support for the Harris 

Programmable Modem Platform,” $73,448, 12/01/04-6/30/05. 

NSF, “Phase I: An Electronic Textile System for Gait Analysis”, $33,000, 

1/1/2005-6/30/2005. 

Office of Naval Research (ONR). “AWINN.” $452,300, 12/20/04-7/31/06. 

Office of Secretary of Defense, “Phase II: Reconfigurable Processor Technology 

for Software Protection,” SBIR Subcontract with Luna Innovations, $237,581, 

6/04-5/06. 

NSF, REU Supplement to ITR: Tailor-Made: Design of e-Textile Architectures 

for Wearable Computing, NSF, $12,000, 6/1/2005 – 8/31/2005. 

Office of Secretary of Defense, “Phase I: Reconfigurable Processor Technology 

for Software Protection,” SBIR Subcontract with Luna Innovations, $33,000, 

8/03-2/04. 

National Science Foundation (NSF), “ITR: Tailor-Made: Design of e-Textile 

Architectures for Wearable Computing”, $399,000, 8/02-8/06. 

NSF, REU Supplement to above grant, $10,000. 

NSF, REU Supplement to above grant, $6,000. 

NSF, “A Toolbox of Scalable Algorithms and Software for Advanced Scientific 

Computing Applications”, $300,000, 4/03-4/06. 

Defense Advanced Research Projects Agency (DARPA). Computational Fabrics, 

$217,000, 3/01-12/02. Subcontract from ISI/University of Southern California.

Office of Naval Research (ONR). Secure Configurable Radio. $751,000, 4/00-

4/04. 

NSF, SUCCEED, $33,000, 9/1/01-8/31/02. 

National Science Foundation (NSF). Parallel unstructured mesh algorithms, 

Amount: $145,023, 10/99-9/02. 

DARPA, Development of algorithms and software for the control of distributed, 

dynamic sensor networks, Amount $411,625, 6/99-6/02. 

DARPA, Subcontact with USC/ISI. Development of algorithms and runtime 

software for systems of configurable computers, Amount $160,000, 10/00-

10/01. 

Department of Energy, Development of algorithms and software for massively 

parallel architectures, Amount: $145,000, 12/98-11/01. 

DARPA, Development of Java-based tools and applications for fast, flexible runtime reconfiguration of configurable computing devices, Amount: $345,574, 

9/99-9/01. 

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DARPA, Development of an application programming interface, algorithms, and 

applications for run-time reconfiguration on novel adaptive computing 

architectures, Amount: $250,000, 6/99-6/01. 

Lockheed-Martin/Sanders, A Wireless Link for Remote Telemetry of Compact 

Airborne System, $125,000, 5/00-4/01. 

DARPA, Development of algorithms and runtime software for systems of 

configurable computers, Amount $169,792, 11/99-10/00. 

National Security Agency (NSA), Software for the translation of JBits FPGA 

programs to EDIF programs, Amount $75,000, 9/99-7/00. 

DARPA, Construction of an API & applications for the control of distributed 

systems of configurable computing nodes, Amount $162,886, 9/98-10/99. 

NSF, Career Award: Parallel algorithms and software for unstructured mesh 

computations, Amount: $125,881, 7/96-7/99. 

Air Force Research Laboratory, Research and development of an Internetbased, interactive, decision making program, Amount: $97,425, 11/97-5/99. 

NSF, Equipment funding for a 16-node cluster of configurable computers, 

Amount: $85,000, 12/97-12/98. 

NSF, Scientific applications in a distributed computing environment, Amount: 

$318,807, 7/95-7/98. 

NSF, Equipment funding for an ATM-based cluster of workstations, Amount, 

$100,000, 1/96-12/96. 

NSF, Workshop organized at Argonne National Laboratory, Amount, $10,000, 

1996. 

PATENTS Inventor, United States Patent No. 8,473,754, Hardware-Facilitated Secure 

Software Execution Environment. 

SOFTWARE SLAAC/ACS API (4/99): Software for the control of complex systems of 

configurable computing nodes and high-speed networks. This code is being 

distributed to the ACS community. Developed in Configurable Computing 

Laboratory with Peter Athanas.

BlockSolve (4/93 & 1/96): Software for solving large sparse linear systems on 

distributed memory architectures. This code has been distributed via netlib and 

ANL ftp and has been accessed by several hundred people as of 4/4/99. 

Developed at Argonne National Laboratory with Paul Plassmann. 

LANZ (10/90): Software for solving the generalized eigenproblem on shared 

memory architectures. This code has been distributed via netlib and NASA and 

has been accessed by over 10,000 people as of 4/4/99. Developed at Duke 

University and Argonne National Laboratory with Merrell Patrick. 

TEACHING Computer Programming 

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Mark T. Jones Curriculum Vitae 14 

RESPONSIBILITIES ECE 5574, Advanced Software Development for CAE

ECE 4574, Large-Scale Software Development for Engineering Systems 

ECE 3574, Applied Software Design 

ECE 2574, Data Structures

 ECE 1574, Engineering Problem Solving with C++

Computer Simulation and Modeling 

 CS 371, Numerical Analysis 

 CS 594, Computational Modeling 

Computer Network, Architecture, and Organization 

ECE 2504, Introduction to Computer Engineering

 CS 594, Internetworking with TCP/IP

 ECE 4504, Computer Organization 

 ECE 4534, Design of Embedded Systems

 ECE 5504 (formerly ECE 5515), Computer and Network Architectures

ECE Special Studies: Configurable Computing, E-Textiles

 ECE 5984, Java-Based Configurable Computing

ECE 6504, Applications of Parallel and Distributed Computing, TV course.

 CS 530, Computer Systems Organization

CEO of DISC, a student-run virtual corporation, for Fall 1998 and Spring 1999. 

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