# Patent

## Title
Functional influenza virus like particles (VLPs)

## Abstract

The present invention discloses and claims virus like particles (VLPs) that express and/or contains seasonal influenza virus proteins, avian influenza virus proteins and/or influenza virus proteins from viruses with pandemic potential. The invention includes vector constructs comprising said proteins, cells comprising said constructs, formulations and vaccines comprising VLPs of the inventions. The invention also includes methods of making and administrating VLPs to vertebrates, including methods of inducing substantial immunity to either seasonal and avian influenza, or at least one symptom thereof.

## Background
This application is a continuation in part of U.S. application Ser. No. 10/617,569, filed Jul. 11, 2003 and claims priority to provisional application 60/727,513, filed Oct. 18, 2005, provisional application 60/780,847, filed Mar. 10, 2006, provisional application 60/800,006, filed May 15, 2006, provisional application 60/831,196, filed Jul. 17, 2006, provisional application 60/832,116, filed Jul. 21, 2006, and provisional application 60/845,495, filed Sep. 19, 2006, all of which are incorporated herein by reference in their entireties for all proposes.


BACKGROUND OF INVENTION
Influenza virus is a member of Orthomyxoviridae family (for review, see Murphy and Webster, 1996). There are three subtypes of influenza viruses designated A, B, and C. The influenza virion contains a segmented negative-sense RNA genome. The influenza virion includes the following proteins: hemagglutinin (HA), neuraminidase (NA), matrix (M1), proton ion-channel protein (M2), nucleoprotein (NP), polymerase basic protein 1 (PB1), polymerase basic protein 2 (PB2), polymerase acidic protein (PA), and nonstructural protein 2 (NS2) proteins. The HA, NA, M1, and M2 are membrane associated, whereas NP, PB1, PB2, PA, and NS2 are nucleocapsid associated proteins. The NS1 is the only nonstructural protein not associated with virion particles but specific for influenza-infected cells. The M1 protein is the most abundant protein in influenza particles. The HA and NA proteins are envelope glycoproteins, responsible for virus attachment and penetration of the viral particles into the cell, and the sources of the major immunodominant epitopes for virus neutralization and protective immunity. Both HA and NA proteins are considered the most important components for prophylactic influenza vaccines.
Influenza virus infection is initiated by the attachment of the virion surface HA protein to a sialic acid-containing cellular receptor (glycoproteins and glycolipids). The NA protein mediates processing of the sialic acid receptor, and virus penetration into the cell depends on HA-dependent receptor-mediated endocytosis. In the acidic confines of internalized endosomes containing an influenza virion, the HA protein undergoes conformational changes that lead to fusion of viral and host cell membranes followed by virus uncoating and M2-mediated release of M1 proteins from nucleocapsid-associated ribonucleoproteins (RNPs), which migrate into the cell nucleus for viral RNA synthesis. Antibodies to HA molecule can prevent virus infection by neutralizing virus infectivity, whereas antibodies to NA proteins mediate their effect on the early steps of viral replication.
Inactivated influenza A and B virus vaccines are licensed currently as trivalent vaccines for parenteral administration. These trivalent vaccines are produced as monovalent bulk in the allantoic cavity of embryonated chick eggs, purified by rate zonal centrifugation or column chromatography, inactivated with formalin or β-propiolactone, and formulated as a blend of the two strains of type A and the type B strain of influenza viruses in circulation among the human population for a given year. The available commercial influenza vaccines are whole virus (WV) or subvirion (SV; split or purified surface antigen) virus vaccines. The WV vaccine contains intact, inactivated virions. SV vaccines treated with solvents such as tri-n-butyl phosphate (Flu-Shield, Wyeth-Lederle) contain nearly all of the viral structural proteins and some of the viral envelopes. SV vaccines solubilized with Triton X-100 (Fluzone, Sanofi-Aventis; Fluvirin, Novartis) contain aggregates of HA monomers, NA, and NP principally, although residual amounts of other viral structural proteins are present. A live attenuated cold-adapted virus vaccine (FluMist, MedImmune) was granted marketing approval recently by the FDA for commercial usage as an intranasally delivered vaccine indicated for active immunization and the prevention of disease caused by influenza A and B viruses in healthy children and adolescents, 5-17 years of age and healthy adults 18-49 years of age.
Several recombinant products have been developed as recombinant influenza vaccine candidates. These approaches have focused on the expression, production, and purification of influenza virus type A HA and NA proteins, including expression of these proteins using baculovirus infected insect cells (Crawford et al, 1999; Johansson, 1999; Treanor et al., 1996), viral vectors (Pushko et al., 1997; Berglund et al., 1999), and DNA vaccine constructs (Olsen et al., 1997).
Crawford et al. (1999) demonstrated that influenza HA expressed in baculovirus infected insect cells is capable of preventing lethal influenza disease caused by avian H5 and H7 influenza subtypes. At the same time, another group demonstrated that baculovirus-expressed influenza HA and NA proteins induce immune responses in animals superior to those induced by a conventional vaccine (Johansson et al., 1999). Immunogenicity and efficacy of baculovirus-expressed hemagglutinin of equine influenza virus was compared to a homologous DNA vaccine candidate (Olsen et al., 1997). Taken together, the data demonstrated that a high degree of protection against influenza virus challenge can be induced with recombinant HA or NA proteins, using various experimental approaches and in different animal models.
Lakey et al. (1996) showed that a baculovirus-derived influenza HA vaccine was well-tolerated and immunogenic in human volunteers in a Phase I dose escalation safety study. However, results from Phase II studies conducted at several clinical sites in human volunteers vaccinated with several doses of influenza vaccines comprised of HA and/or NA proteins indicated that the recombinant subunit protein vaccines did not elicit protective immunity [G. Smith, Protein Sciences; M. Perdue, USDA, Personal Communications]. These results indicated that conformational epitopes displayed on the surface of HA and NA peplomers of infectious virions were important in the elicitation of neutralizing antibodies and protective immunity.
Regarding the inclusion of other influenza proteins in recombinant influenza vaccine candidates, a number of studies have been carried out, including the experiments involving influenza nucleoprotein, NP, alone or in combination with M1 protein (Ulmer et al., 1993; Ulmer et al., 1998; Zhou et al., 1995; Tsui et al., 1998). These vaccine candidates, which were composed of quasi-invariant inner virion proteins, elicited a broad spectrum immunity that was primarily cellular (both CD4+ and CD8+ memory T cells). These experiments involved the use of the DNA or viral genetic vectors. Relatively large amounts of injected DNA were needed, as results from experiments with lower doses of DNA indicated little or no protection (Chen et al., 1998). Hence, further preclinical and clinical research may be required to evaluate whether such DNA-based approaches involving influenza NP and M1 are safe, effective, and persistent.
Recently, in an attempt to develop more effective vaccines for influenza, particulate proteins were used as carriers of influenza M2 protein epitopes. The rationale for development of an M2-based vaccine was that in animal studies protective immunity against influenza was elicited by M2 proteins (Slepushkin et al., 1995). Neirynck et al. (1999) used a 23-aa long M2 transmembrane domain as an amino terminal fusion partner with the hepatitis B virus core antigen (HBcAg) to expose the M2 epitope(s) on the surface of HBcAg capsid-like particles. However, in spite of the fact that both full-length M2 protein and M2-HBcAg VLP induced detectable antibodies and protection in mice, it was unlikely that future influenza vaccines would be based exclusively on the M2 protein, as the M2 protein was present at low copy number per virion, was weakly antigenic, was unable to elicit antibodies that bound free influenza virions, and was unable to block virus attachment to cell receptors (i.e. virus neutralization).
Since previous research has shown that the surface influenza glycoproteins, HA and NA, are the primary targets for elicitation of protective immunity against influenza virus and that M1 provides a conserved target for cellular immunity to influenza, a new vaccine candidate may include these viral antigens as a protein macromolecular particle, such as virus-like particles (VLPs). Further, the particle with these influenza antigens may display conformational epitopes that elicit neutralizing antibodies to multiple strains of influenza viruses.
Several studies have demonstrated that recombinant influenza proteins could self-assemble into VLPs in cell culture using mammalian expression plasmids or baculovirus vectors (Gomez-Puertas et al., 1999; Neumann et al., 2000; Latham and Galarza, 2001). Gomez-Puertas et al. (1999) demonstrated that efficient formation of influenza VLP depends on the expression levels of viral proteins. Neumann et al. (2000) established a mammalian expression plasmid-based system for generating infectious influenza virus-like particles entirely from cloned cDNAs. Latham and Galarza (2001) reported the formation of influenza VLPs in insect cells infected with recombinant baculovirus co-expressing HA, NA, M1, and M2 genes. These studies demonstrated that influenza virion proteins may self-assemble upon co-expression in eukaryotic cells.
SUMMARY OF INVENTION
The present invention provides for a vaccine comprising an influenza VLP, wherein said VLP comprises influenza M1, HA and NA proteins, wherein said vaccine induces substantial immunity to influenza virus infection in an animal susceptible to influenza. In one embodiment, said M1 protein is derived from a different influenza virus strain as compared to the HA and NA proteins. In another embodiment, said HA and/or NA exhibit hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said influenza VLP comprises seasonal influenza virus HA and NA proteins. In another embodiment, said influenza VLP comprises avian influenza HA and NA proteins.
The present invention also provides for a method of inducing substantial immunity to influenza virus infection in an animal susceptible to influenza, comprising administering at least one effective dose of the vaccine comprising an influenza VLP. In one embodiment, said method comprises administering to an animal said influenza VLP orally, intradermally, intranasally, intramusclarly, intraperitoneally, intravenously, or subcutaneously.
The present invention also provides for a method of formulating a vaccine that induces substantial immunity to influenza virus infection to an animal susceptible to influenza, comprising adding to said formulation an effective dose of an influenza VLP, wherein said VLP comprises influenza M1, HA and NA proteins, wherein said vaccine induces substantial immunity to influenza virus infection to said animal. In one embodiment, said VLP consists essentially of influenza M1, HA and NA proteins. In another embodiment, said VLP consists of influenza M1, HA and NA proteins.
The present invention also provides for a virus like particle (VLP) comprising an influenza virus M1 protein and influenza virus H5 and N1 hemagglutinin and neuraminidase proteins. In one embodiment said M1 protein is derived from a different influenza virus strain as compared to the H5 and N1 proteins. In one embodiment, said H5 or N1 are from a H5N1 clade 1 influenza virus. In another embodiment, said H5 and N1 are from a H5N1 clade 2 influenza virus.
The invention also provides a macromolecular protein structure containing (a) a first influenza virus M1 protein and (b) an additional structural protein, which may include a second or more influenza virus M1 protein; a first, second or more influenza virus HA protein; a first, second, or more influenza virus NA protein; and a first, second, or more influenza virus M2 protein. If the additional structural protein is not from a second or more influenza virus M1 protein, then both or all members of the group, e.g., first and second influenza M2 virus proteins are included. As such, there is provided a functional influenza protein structure, including a subviral particle, VLP, or capsomer structure, or a portion thereof, a vaccine, a multivalent vaccine, and mixtures thereof consisting essentially of influenza virus structural proteins produced by the method of the invention. In a particularly preferred embodiment, the influenza macromolecular protein structure includes influenza virus HA, NA, and M1 proteins that are the expression products of influenza virus genes cloned as synthetic fragments from a wild type virus.
The macromolecular protein structure may also include an additional structural protein, for example, a nucleoprotein (NP), membrane proteins from species other than noninfluenza viruses and a membrane protein from a non-influenza source, which are derived from avian or mammalian origins and different subtypes of influenza virus, including subtype A and B influenza viruses. The invention may include a chimeric macromolecular protein structure, which includes a portion of at least one protein having a moiety not produced by influenza virus.
Prevention of influenza may be accomplished by providing a macromolecular protein structure that may be self-assembled in a host cell from a recombinant construct. The macromolecular protein structure of the invention has the ability to self-assemble into homotypic or heterotypic virus-like particles (VLPs) that display conformational epitopes on HA and NA proteins, which elicit neutralizing antibodies that are protective. The composition may be a vaccine composition, which also contains a carrier or diluent and/or an adjuvant. The functional influenza VLPs elicit neutralizing antibodies against one or more strains or types of influenza virus depending on whether the functional influenza VLPs contain HA and/or NA proteins from one or more viral strains or types. The vaccine may include influenza virus proteins that are wild type influenza virus proteins. Preferably, the structural proteins containing the influenza VLP, or a portion of thereof, may be derived from the various strains of wild type influenza viruses. The influenza vaccines may be administered to humans or animals to elicit protective immunity against one or more strains or-types of influenza virus.
The macromolecular protein structures of the invention may exhibit hemagglutinin activity and/or neuraminidase activity.
The invention provides a method for producing a VLP derived from influenza by constructing a recombinant construct that encodes influenza structural genes, including M1, HA, and at least one structural protein derived from influenza virus. A recombinant construct is used to transfect, infect, or transform a suitable host cell with the recombinant baculovirus. The host cell is cultured under conditions which permit the expression of M1, HA and at least one structural protein derived from influenza virus and the VLP is formed in the host cell. The infected cell media containing a functional influenza VLP is harvested and the VLP is purified. The invention also features an additional step of co-transfecting, co-infecting or co-transforming the host cell with a second recombinant construct which encodes a second influenza protein, thereby incorporating the second influenza protein within the VLP. Such structural proteins may be derived from influenza virus, including NA, M2, and NP, and at least one structural protein is derived from avian or mammalian origins. The structural protein may be a subtype A and B influenza viruses. According to the invention, the host cell may be a eukaryotic cell. In addition, the VLP may be a chimeric VLP.
The invention also features a method of formulating a drug substance containing an influenza VLP by introducing recombinant constructs encoding influenza viral genes into host cells and allowing self-assembly of the recombinant influenza viral proteins into a functional homotypic or heterotypic VLP in cells. The influenza VLP is isolated and purified and a drug substance is formulated containing the influenza VLP. The drug substance may further include an adjuvant. In addition, the invention provides a method for formulating a drug product, by mixing such a drug substance containing an influenza VLP with a lipid vesicle, i.e., a non-ionic lipid vesicle. Thus, functional homotypic or heterotypic VLPs may bud as enveloped particles from the infected cells. The budded influenza VLPs may be isolated and purified by ultracentrifugation or column chromatography as drug substances and formulated alone or with adjuvants such as Novasomes®, a product of Novavax, Inc., as drug products such as vaccines. Novasomes®, which provide an enhanced immunological effect, are further described in U.S. Pat. No. 4,911,928, which is incorporated herein by reference.
The invention provides a method for detecting humoral immunity to influenza virus infection in a vertebrate by providing a test reagent including an effective antibody-detecting amount of influenza virus protein having at least one conformational epitope of an influenza virus macromolecular structure. The test reagent is contacted with a sample of bodily fluid from a vertebrate to be examined for influenza virus infection. Influenza virus specific antibodies contained in the sample are allowed to bind to the conformational epitope of an influenza virus macromolecular structure to form antigen-antibody complexes. The complexes are separated from unbound complexes and contacted with a detectably labeled immunoglobulin-binding agent. The amount of the detectably labeled immunoglobulin-binding agent that is bound to the complexes is determined.
Influenza virus may be detected in a specimen from an animal or human suspected of being infected with the virus by providing antibodies, which have a detectable signal producing label, or are attached to a detectably labeled reagent, having specificity to at least one conformational epitope of the particle of the influenza virus. The specimen is contacted with antibodies and the antibodies are allowed to bind to the influenza virus. The presence of influenza virus in the specimen is determined by means of the detectable label.
The invention provides methods for treatment, prevention, and generating a protective immune response by administering to a vertebrate an effective amount of the composition of the invention.
Alternatively, the influenza VLP drug substance may be formulated as laboratory reagents used for influenza virus structure studies and clinical diagnostic assays. The invention also provides a kit for treating influenza virus by administering an effective amount of a composition of the invention and directions for use.
The invention also provides for a VLP comprising HA, NA and M1 proteins derived from an avian influenza virus which can cause morbidity or mortality in a vertebrate. In one embodiment, said HA, NA and M1 proteins are derived from an avian influenza type A virus. In another embodiment the HA is selected from the group consisting of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15 and H16 and the NA is selected from the group consisting of N1, N2, N3, N4, N5, N6, N7, N8 and N9. In a further embodiment, said HA and NA proteins are H5 and N1, respectively. In another embodiment, said HA and NA proteins are H9 and N2, respectively. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In one embodiment, the VLP consists essentially of HA, NA and M1 proteins, i.e., these are substantially the only influenza proteins in the VLP.
The invention also provides for a method of producing a VLP, comprising transfecting vectors encoding avian influenza virus proteins into a suitable host cell and expressing said avian influenza virus proteins under condition that allow VLPs to be formed. In one embodiment, this method involves transfecting a host cell with recombinant DNA molecules that encode only the HA, NA and M1 influenza proteins.
The invention also comprises an antigenic formulation comprising a VLP comprising HA, NA and M1 proteins derived from an avian influenza virus which can cause morbidity or mortality in a vertebrate. In another embodiment, the HA is selected from the group consisting of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, and H16 and the NA is selected from the group consisting of N1, N2, N3, N4, N5, N6, N7, N8 and N9. In a further embodiment, said HA and NA proteins are H5 and N1, respectively. In another embodiment, said HA and NA proteins are H9 and N2, respectively. In a further embodiment, said antigenic formulation is administered to the subject orally, intradermally, intranasally, intramusclarly, intraperitoneally, intravenously, or subcutaneously.
The invention further provides for a method of vaccinating a vertebrate against avian influenza virus comprising administering to said vertebrate a protection-inducing amount of a VLP comprising HA, NA and M1 proteins derived from an avian influenza virus.
This invention also comprises a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP. In one embodiment, said VLP consists essentially of HA, NA and M1. In another embodiment, said VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully.
This invention also comprises a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an avian influenza VLP. In one embodiment, said influenza VLP consists essentially of avian HA, NA and M1. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of avian HA, NA and M1.
This invention further comprises a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of a seasonal influenza VLP. In one embodiment, said influenza VLP consists essentially of seasonal HA, NA and M1. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of seasonal HA, NA and M1.
This invention further comprises a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of at least one seasonal influenza VLP. In one embodiment, said influenza VLP comprises seasonal influenza HA, NA and M1. In another embodiment, said influenza VLP consists essentially of seasonal influenza HA, NA and M1.
This invention further comprises a method of inducing a substantially protective antibody response to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP.
This invention comprises a method of inducing a substantially protective cellular immune response to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP.
This invention further comprises a method of formulating a vaccine that induces substantial immunity to influenza virus infection or at least one symptom thereof to a subject, comprising adding to said formulation an effective dose of an influenza VLP. In one embodiment, said substantial immunity to influenza virus infection or at least one symptom thereof is delivered in one dose. In another embodiment, said substantial immunity to influenza virus infection or at least one symptom thereof is delivered in multiple doses.
This invention further comprises a vaccine comprising an influenza VLP, wherein said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof when administered to a subject. In one embodiment, said influenza VLP is an avian influenza VLP. In another embodiment, said influenza VLP is a seasonal influenza VLP.
This invention further comprises an antigenic formulation comprising an influenza VLP, wherein said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof when administered to a subject. In one embodiment, said influenza VLP is an avian influenza VLP. In another embodiment, said influenza VLP is a seasonal influenza VLP.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 depicts the nucleotide sequence of avian influenza A/Hong Kong/1073/99 (H9N2) virus neuraminidase (NA) gene (SEQ ID NO:1).
FIG. 2 depicts the nucleotide sequence of avian influenza A/Hong Kong/1073/99 (H9N2) virus hemagglutinin (HA) gene (SEQ ID NO:2).
FIG. 3 depicts the nucleotide sequence of avian influenza A/Hong Kong/1073/99 (H9N2) virus matrix protein M1 (M1) gene (SEQ ID NO:3).
FIG. 4 depicts the transfer vectors for construction of recombinant baculoviruses for expression of avian influenza A/Hong Kong/1073/99 (H9N2) HA, NA, and M1 proteins. FIG. 4A depicts a transfer vector for expression of individual genes and FIG. 4B depicts the transfer vector for multi-expression of the genes.
FIG. 5 depicts the expression of avian influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 proteins in Sf-9S cells.
FIG. 6 depicts the purification of avian influenza A/Hong Kong/1073/99 (H9N2) VLPs by the sucrose density gradient method.
FIG. 7 depicts the detection of influenza virus protein by gel filtration chromatography. The antibodies used in the Western blot analyses are as follows: (A) rabbit anti-H9N2; (b) murine anti-M1 mAb; and (C) murine anti-BACgp64.
FIG. 8 depicts the detection of avian influenza A/Hong Kong/1073/99 (H9N2) proteins including subviral particles, VLP, and VLP complexes, by electron microscopy.
FIG. 9 depicts the hemagglutination activity of purified avian influenza A/Hong Kong/1073/99 (H9N2) VLPs.
FIG. 10 depicts the neuraminidase activity of purified avian influenza A/Hong Kong/1073/99 (H9N2) VLPs.
FIG. 11 depicts the immunization and bleed schedule for the immunogenicity study of recombinant influenza with purified avian influenza A/Hong Kong/1073/99 (H9N2) VLPs in mice.
FIG. 12 depicts the results of an immunogenicity study in mice immunized with recombinant influenza H9N2 VLPs. FIG. 12A depicts sera from BALB/c mice immunized with recombinant VLPs comprised of HA, NA, and M1 proteins from avian influenza virus type A/H9N2/Hong Kong/1073/99. FIG. 12B depicts sera from New Zealand white rabbits immunized with inactivated avian influenza virus type A H9N2 were reacted with Western blots containing inactivated avian influenza virus type A H9N2 (lanes 1 and 3) or cold-adapted avian influenza virus type A H9N2 (lanes 2 and 4).
FIG. 13 depicts the geometric mean antibody responses in BALB/c mice after a primary and secondary immunization.
FIG. 14 depicts serum hemagglutinin inhibition (HI) responses in BALB/c mice.
FIG. 15 depicts weight loss (%) in BALB/c mice challenged with H9N2 influenza.
FIG. 16 depicts lung virus titers at 3 and 5 days post challenge with H9N2.
FIGS. 17A, 17B and 17C depict mice antibody response to A/Fujian/411/2002 when immunized with H3N2 VLP.
FIGS. 18A and B depict mice IgG antibody isotypes
FIG. 19 hemagglutinin inhibition (HI) antibody responses in SD Rats immunized with H9N2 VLP vaccine.
FIGS. 20A and 20B depict hemagglutinin inhibition (HI) antibody responses to different doses of H9N2 VLPs with and without adjuvant in BALB/c mice.
FIG. 21 depicts serum hemagglutinin inhibition (HI) responses in BALB/c mice between different doses of VLPs.
FIG. 22 depicts serum hemagglutinin inhibition (HI) responses in ferrets.
FIG. 23 depicts serum hemagglutinin inhibition (HI) responses from serum pulled on days 21 and 42 from ferrets after administration of different strains of H3N2 VLPs.
FIG. 24 depicts anti-HA Antibody (Endpoint Dilution Titer) of mice inoculated intramuscularly with H5N1 (Vietnam/1203/2003) VLPs at low doses.
FIG. 25 depicts anti-HA Antibody (Endpoint Dilution Titer) of mice inoculated intranasally with H5N1 (Vietnam/1203/2003) VLPs at low doses.
FIG. 26 depicts an example for manufacturing, isolating and purifying VLPs of the invention.
FIG. 27 depicts mice inoculated with H3N2 VLPs given intramuscularly and subsequently challenged intranasally with A/Aichi/2/68×31 (H3N2) virus.
FIG. 28 depicts mice inoculated with H3N2 VLPs given intranasally and subsequently challenged intranasally with A/Aichi/2/68×31 (H3N2) virus.
FIG. 29 depicts virus shedding in nasal washes of ferret inoculated with H9N2 VLP vaccine and subsequently challenged intranasally with H9N2 virus.
FIG. 30A, 30B, 30C, 30D, 30E, 30F, 30G, 30H depicts hemagglutinin inhibition (HI) antibody responses in mice after inoculation with different doses of A/Fujian/411/2002 (H3N2) VLPs intramuscularly or intranasally tested against different H3N2 strains of influenza viruses.



DETAILED DESCRIPTION OF THE INVENTION
As used herein, the term “baculovius,” also known as baculoviridae, refers to a family of enveloped DNA viruses of arthropods, members of which may be used as expression vectors for producing recombinant proteins in insert cell cultures. The virion contains one or more rod-shaped nucleocapsids containing a molecule of circular supercoiled double-stranded DNA (Mr 54×106−154×106). The virus used as a vector is generally Autographa californica nuclear polyhedrosis virus (NVP). Expression of introduced genes is under the control of the strong promoter that normally regulates expression of the polyhedron protein component of the large nuclear inclusion in which the viruses are embedded in the infected cells.
As used herein, the term “derived from” refers to the origin or source, and may include naturally occurring, recombinant, unpurified, or purified molecules. The proteins and molecules of the present invention may be derived from influenza or non-influenza molecules.
As used herein the term “first” influenza virus protein, i.e., a first influenza virus M1 protein, refers to a protein, such as M1, HA, NA, and M2, that is derived from a particular strain of influenza virus. The strain or type of the first influenza virus differs from the strain or type of the second influenza virus protein. Thus, “second” influenza virus protein, i.e., the second influenza virus M1 protein, refers to a protein, such as M1, HA, NA, and M2, that is derived from a second strain of influenza virus, which is a different strain or type than the first influenza virus protein.
As used herein, the term “hemagglutinin activity” refers to the ability of HA-containing proteins, VLPs, or portions thereof to bind and agglutinate red blood cells (erythrocytes).
As used herein, the term “neuraminidase activity” refers to the enzymatic activity of NA-containing proteins, VLPs, or portions thereof to cleave sialic acid residues from substrates including proteins such as fetuin.
As used herein, the term “heterotypic” refers to one or more different types or strains of virus.
As used herein, the term “homotypic” refers to one type or strain of virus.
As used herein, the term “macromolecular protein structure” refers to the construction or arrangement of one or more proteins.
As used herein, the term “multivalent” vaccine refers to a vaccine against multiple types or strains of influenza virus.
As used herein, the term “non-influenza” refers to a protein or molecule that is not derived from influenza virus.
As used herein, the term “vaccine” refers to a preparation of dead or weakened pathogens, or of derived antigenic determinants, that is used to induce formation of antibodies or immunity against the pathogen. A vaccine is given to provide immunity to the disease, for example, influenza, which is caused by influenza viruses. The present invention provides vaccine compositions that are immunogenic and provide protection. In addition, the term “vaccine” also refers to a suspension or solution of an immunogen (e.g. VLP) that is administered to a vertebrate to produce protective immunity, i.e., immunity that reduces the severity of disease associated with infection.
As used herein the term “substantial immunity” refers to an immune response in which when VLPs of the invention are administered to a vertebrate there is an induction of the immune system in said vertebrate which results in the prevention of influenza infection, amelioration of influenza infection or reduction of at least one symptom related to influenza virus infection in said vertebrate. Substantial immunity may also refer to a haemagglutination inhibition (HI) titer of ≧40 in a mammal wherein the VLPs of the invention have been administered and have induced an immune response.
As used herein the term “adjuvant” refers to a compound that, when used in combination with a specific immunogen (e.g. a VLP) in a formulation, augments or otherwise alters or modifies the resultant immune response. Modification of the immune response includes intensification or broadening the specificity of either or both antibody and cellular immune responses. Modification of the immune response can also mean decreasing or suppressing certain antigen-specific immune responses.
As used herein the term “immune stimulator” refers to a compound that enhances an immune response via the body's own chemical messengers (cytokines). These molecules comprise various cytokines, lymphokines and chemokines with immunostimulatory, immunopotentiating, and pro-inflammatory activities, such as interleukins (e.g., IL-1, IL-2, IL-3, IL-4, IL-12, IL-13); growth factors (e.g., granulocyte-macrophage (GM)-colony stimulating factor (CSF)); and other immunostimulatory molecules, such as macrophage inflammatory factor, Flt3 ligand, B7.1; B7.2, etc. The immune stimulator molecules can be administered in the same formulation as the influenza VLPs, or can be administered separately. Either the protein or an expression vector encoding the protein can be administered to produce an immunostimulatory effect.
As used herein an “effective dose” generally refers to that amount of the VLP of the invention sufficient to induce immunity, to prevent and/or ameliorate influenza virus infection or to reduce at least one symptom of influenza infection and/or to enhance the efficacy of another dose of a VLP. An effective dose may refer to the amount of the VLP sufficient to delay or minimize the onset of an influenza infection. An effective dose may also refer to the amount of the VLP that provides a therapeutic benefit in the treatment or management of influenza infection. Further, an effective dose is the amount with respect to the VLPs of the invention alone, or in combination with other therapies, that provides a therapeutic benefit in the treatment or management of an influenza viral infection. An effective dose may also be the amount sufficient to enhance a subject's (e.g., a human's) own immune response against a subsequent exposure to influenza virus. Levels of immunity can be monitored, e.g., by measuring amounts of neutralizing secretory and/or serum antibodies, e.g., by plaque neutralization, complement fixation, enzyme-linked immunosorbent, or microneutralization assay. In the case of a vaccine, an “effective dose” is one that prevents disease or reduces the severity of symptoms.
As used herein the term “avian influenza virus” refers to influenza viruses found chiefly in birds but that can also infect humans or other animals. In some instances, avian influenza viruses may be transmitted or spread from one human to another. An avian influenza virus that infects humans has the potential to cause an influenza pandemic, i.e., morbidity and/or mortality in humans. A pandemic occurs when a new strain of influenza virus (a virus in which human have no natural immunity) emerges, spreading beyond individual localities, possibly around the globe, and infecting many humans at once.
As used herein the term “seasonal influenza virus” refers to the influenza viral strains that have been determined to be passing within the human population for a given influenza season based on epidemiological surveys conducted by National Influenza Centers worldwide. These epidemiological studies, and some isolated influenza viruses, are sent to one of four World Health Organization (WHO) reference laboratories, one of which is at the Centers for Disease Control and Prevention (CDC) in Atlanta for detailed testing. These laboratories test how well antibodies made to the current vaccine react to the circulating virus and new flu viruses. This information, along with information about flu activity, is summarized and presented to an advisory committee of the U.S. Food and Drug Administration (FDA) and at a WHO meeting. These meetings result in the selection of three viruses (two subtypes of influenza A viruses and one influenza B virus) to go into flu vaccines for the following fall and winter. The selection occurs in February for the northern hemisphere and in September for the southern hemisphere. Usually, one or two of the three virus strains in the vaccine changes each year.
As used herein the term “substantially protective antibody response” refers to an immune response mediated by antibodies against an influenza virus, which is exhibited by a vertebrate (e.g., a human), that prevents or ameliorates influenza infection or reduces at least one symptom thereof. VLPs of the invention can stimulate the production of antibodies that, for example, neutralizing antibodies that block influenza viruses from entering cells, blocks replication of said influenza virus by binding to the virus, and/or protect host cells from infection and destruction.
As used herein the term “substantially protective cellular response” refers to an immune response that is mediated by T-lymphocytes and/or other white blood cells against influenza virus, exhibited by a vertebrate (e.g., a human), that prevents or ameliorates influenza infection or reduces at least one symptom thereof. One important aspect of cellular immunity involves an antigen-specific response by cytolytic T-cells (“CTL”s). CTLs have specificity for peptide antigens that are presented in association with proteins encoded by the major histocompatibility complex (MHC) and expressed on the surfaces of cells. CTLs help induce and promote the destruction of intracellular microbes, or the lysis of cells infected with such microbes. Another aspect of cellular immunity involves an antigen-specific response by helper T-cells. Helper T-cells act to help stimulate the function, and focus the activity of, nonspecific effector cells against cells displaying peptide antigens in association with MHC molecules on their surface. A “cellular immune response” also refers to the production of cytokines, chemokines and other such molecules produced by activated T-cells and/or other white blood cells, including those derived from CD4+ and CD8+ T-cells.
As used herein the term “substantial immunity in a population-wide basis” refers to immunity as a result of VLPs of the invention administered to individuals in a population. The immunity in said individual in said population results in the prevention, amelioration of influenza infection, or reduction of at least one symptom related to influenza virus infection in said individual, and prevents the spread of said influenza virus to others in the population. The term population is defined as group of individuals (e.g. schoolchildren, elderly, healthy individuals etc.) and may comprise a geographic area (e.g. specific cities, schools, neighborhoods, workplace, country, state, etc.).
As use herein, the term “antigenic formulation” or “antigenic composition” refers to a preparation which, when administered to a vertebrate, especially a bird or a mammal, will induce an immune response.
As use herein, the term “vertebrate” or “subject” or “patient” refers to any member of the subphylum cordata, including, without limitation, humans and other primates, including non-human primates such as chimpanzees and other apes and monkey species. Farm animals such as cattle, sheep, pigs, goats and horses; domestic mammals such as dogs and cats; laboratory animals including rodents such as mice, rats and guinea pigs; birds, including domestic, wild and game birds such as chickens, turkeys and other gallinaceous birds, ducks, geese, and the like are also non-limiting examples. The terms “mammals” and “animals” are included in this definition. Both adult and newborn individuals are intended to be covered.
Influenza remains a pervasive public health concern despite the availability of specific inactivated virus vaccines that are 60-80% effective under optimal conditions. When these vaccines are effective, illness is usually averted by preventing viral infection. Vaccine failure can occur as a result of accumulated antigenic differences (antigenic shift and antigenic drift). For example, avian influenza virus type A H9N2 co-circulated with human influenza virus type A Sydney/97 (H3N2) in pigs and led to genetic reassortment and emergence of new strains of human influenza virus with pandemic potential (Peiris et al., 2001). In the event of such antigenic shift, it is unlikely that current vaccines would provide adequate protection.
Another reason for the paucity of influenza vaccine programs is the relatively short persistence of immunity elicited by the current vaccines. Further inadequacy of influenza control measures reflects restricted use of current vaccines because of vaccine reactogenicity and side effects in young children, elderly, and people with allergies to components of eggs, which are used in manufacturing of commercially licensed inactivated virus influenza vaccines.
Additionally, inactivated influenza virus vaccines often lack or contain altered HA and NA conformational epitopes, which elicit neutralizing antibodies and play a major role in protection against disease. Thus, inactivated viral vaccines, as well as some recombinant monomeric influenza subunit protein vaccines, deliver inadequate protection. On the other hand, macromolecular protein structures, such as capsomers, subviral particles, and/or VLPs, include multiple copies of native proteins exhibiting conformational epitopes, which are advantageous for optimal vaccine immunogenicity.
The present invention describes the cloning of avian influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 genes into a single baculovirus expression vector alone or in tandem and production of influenza vaccine candidates or reagents comprised of recombinant influenza structural proteins that self-assemble into functional and immunogenic homotypic macromolecular protein structures, including subviral influenza particles and influenza VLP, in baculovirus-infected insect cells.
The present invention describes the cloning of human influenza A/Sydney/5/97 and A/Fujian/411/2002 (H3N2) virus HA, NA, M1, M2, and NP genes into baculovirus expression vectors and production influenza vaccine candidates or reagents comprised of influenza structural proteins that self-assemble into functional and immunogenic homotypic macromolecular protein structures, including subviral influenza particles and influenza VLP, in baculovirus-infected insect cells.
In addition, the instant invention describes the cloning of the HA gene of human influenza A/Sydney/5/97 and A/Fujian/411/2002 (H3N2) virus and the HA, NA, and M1 genes of avian influenza A/Hong Kong/1073/99 (H9N2) into a single baculovirus expression vector in tandem and production influenza vaccine candidates or reagents comprised of influenza structural proteins that self-assemble into functional and immunogenic heterotypic macromolecular protein structures, including subviral influenza particles and influenza VLP, in baculovirus-infected insect cells.
VLPs of the Invention
Influenza VLPs of the invention are useful for preparing vaccines against influenza viruses. One important feature of this system is the ability to replace the surface glycoproteins with different subtypes of HA and/or NA or other viral proteins, thus, allowing updating of new influenza antigenic variants every year or to prepare for an influenza pandemic. As antigenic variants of these glycoproteins are identified, the VLPs can be updated to include these new variants (e.g. for seasonal influenza vaccines). In addition, surface glycoproteins from potentially pandemic viruses, such as H5N1, or other HA, NA combinations with pandemic potential could be incorporated into VLPs without concern of releasing genes that had not circulated in humans for several decades. This is because the VLPs are not infectious, do not replicate and cannot cause disease. Thus, this system allows for creating a new candidate influenza vaccine every year and/or an influenza pandemic vaccine whenever it is necessary.
There are 16 different hemagglutinin (HA) and 9 different neuraminidase (NA) all of which have been found among wild birds. Wild birds are the primary natural reservoir for all types of influenza A viruses and are thought to be the source of all types of influenza A viruses in all other vertebrates. These subtypes differ because of changes in the hemagglutinin (HA) and neuraminidase (NA) on their surface. Many different combinations of HA and NA proteins are possible. Each combination represents a different type of influenza A virus. In addition, each type can be further classified into strains based on different mutations found in each of its 8 genes.
All known types of influenza A viruses can be found in birds. Usually avian influenza viruses do not infect humans. However, some avian influenza viruses develop genetic variations associated with the capability of crossing the species barrier. Such a virus is capable of causing a pandemic because humans have no natural immunity to the virus and can easily spread from person to person. In 1997, avian influenza virus jumped from a bird to a human in Hong Kong during an outbreak of bird flu in poultry. This virus was identified as influenza virus H5N1. The virus caused severe respiratory illness in 18 people, six of whom died. Since that time, many more cases of known H5N1 infections have occurred among humans worldwide; approximately half of those people have died.
Thus, the present invention encompasses the cloning of HA, NA and M1 nucleotides from avian influenza viruses, influenza viruses with pandemic potential and/or seasonal influenza viruses into expression vectors. The present invention also describes the production of influenza vaccine candidates or reagents comprised of influenza proteins that self-assemble into functional VLPs. All combinations of viral proteins must be co-expressed with a M1 nucleotide.
VLPs of the invention consist or comprise influenza HA, NA and M1 proteins. In one embodiment, said VLP comprises a HA from an avian, pandemic and/or seasonal influenza virus and a NA from an avian, pandemic and/or seasonal influenza virus, wherein said HA is selected from the group consisting of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15 and H16 and said NA is selected from the group consisting of N1, N2, N3, N4, N5, N6, N7, N8 and N9. In another embodiment, the invention comprises a VLP that consists essentially of HA, NA and M1. Said HA and NA can be from the above list of HA and NA. These VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, the HA and/or the NA may exhibit hemagglutinin activity and/or neuraminidase activity, respectively, when expressed on the surface of VLPs.
In another embodiment, said VLP comprises HA and NA of the H5N1 virus and a M1 protein (the M1 protein may or may not be from the same viral strain). In another embodiment, said VLP consists essentially of HA, NA of the H5N1 virus and a M1 protein. These VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In a further embodiment, said VLP consists of HA, NA of the H5N1 virus and a M1 protein. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of H5, N1 and M1 proteins. These VLPs contain H5, N9 and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, H5 and/or N1). In another embodiment, the H5 and/or the N1 may exhibit hemagglutinin activity and/or neuraminidase activity, respectively, when expressed on the surface of VLPs.
In another embodiment, said VLP comprises the HA and NA of the H9N2 virus, and a M1 protein. In another embodiment, said VLP consists essentially of the HA and NA of the H9N2 virus, and a M1 protein. These VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, said VLP consists of the HA and NA of the H9N2 virus, and a M1 protein. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of H9, N2 and M1 proteins. These VLPs contain H9, N2 and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, H9 and/or N2). In another embodiment, the H9 and/or the N2 may exhibit hemagglutinin activity and/or neuraminidase activity, respectively, when expressed on the surface of VLPs.
In another embodiment, said VLP comprises the HA and NA from an influenza B virus, and a M1 protein. Influenza B viruses are usually found only in humans. Unlike influenza A viruses; these-viruses are not classified according to subtype. Influenza B viruses can cause morbidity and mortality among humans, but in general are associated with less severe epidemics than influenza A viruses. In another embodiment, said VLP consists essentially of the HA and NA of the influenza B virus, and a M1 protein. These VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said VLP consists of the HA and NA of the influenza B virus, and a M1 protein. In another embodiment, the HA and/or the NA may exhibit hemagglutinin activity and/or neuraminidase activity, respectively, when expressed on the surface of VLPs.
The invention also encompasses variants of the said influenza proteins expressed on or in the VLPs of the invention. The variants may contain alterations in the amino acid sequences of the constituent proteins. The term “variant” with respect to a polypeptide refers to an amino acid sequence that is altered by one or more amino acids with respect to a reference sequence. The variant can have “conservative” changes, wherein a substituted amino acid has similar structural or chemical properties, e.g., replacement of leucine with isoleucine. Alternatively, a variant can have “nonconservative” changes, e.g., replacement of a glycine with a tryptophan. Analogous minor variations can also include amino acid deletion or insertion, or both. Guidance in determining which amino acid residues can be substituted, inserted, or deleted without eliminating biological or immunological activity can be found using computer programs well known in the art, for example, DNASTAR software.
Natural variants can occur due to antigenic drifts. Antigenic drifts are small changes in the viral proteins that happen continually over time. Thus, a person infected with a particular flu virus strain develops antibody against that virus, as newer virus strains appear, the antibodies against the older strains no longer recognize the newer virus and reinfection can occur. This is why there is a new vaccine for influenza each season. In addition, some changes in an influenza virus can cause influenza virus to cross species. For example, some avian influenza viruses developed genetic variations associated with the capability of crossing the species barrier. Such a virus is capable of causing a pandemic because people have no natural immunity to the virus and the virus can easily spread from person to person. These naturally occurring variations of the influenza proteins are an embodiment of the invention.
General texts which describe molecular biological techniques, which are applicable to the present invention, such as cloning, mutation, cell culture and the like, include Berger and Kimmel, Guide to Molecular Cloning Techniques, Methods in Enzymology volume 152 Academic Press, Inc., San Diego, Calif. (Berger); Sambrook et al., Molecular Cloning—A Laboratory Manual (3rd Ed.), Vol. 1-3, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., 2000 (“Sambrook”) and Current Protocols in Molecular Biology, F. M. Ausubel et al., eds., Current Protocols, a joint venture between Greene Publishing Associates, Inc. and John Wiley & Sons, Inc., (“Ausubel”). These texts describe mutagenesis, the use of vectors, promoters and many other relevant topics related to, e.g., the cloning and mutation of HA and/or NA molecules, etc. Thus, the invention also encompasses using known methods of protein engineering and recombinant DNA technology to improve or alter the characteristics of the influenza proteins expressed on or in the VLPs of the invention. Various types of mutagenesis can be used to produce and/or isolate variant HA, NA and/or M1 molecules and/or to further modify/mutate the polypeptides of the invention. They include but are not limited to site-directed, random point mutagenesis, homologous recombination (DNA shuffling), mutagenesis using uracil containing templates, oligonucleotide-directed mutagenesis, phosphorothioate-modified DNA mutagenesis, mutagenesis using gapped duplex DNA or the like. Additional suitable methods include point mismatch repair, mutagenesis using repair-deficient host strains, restriction-selection and restriction-purification, deletion mutagenesis, mutagenesis by total gene synthesis, double-strand break repair, and the like. Mutagenesis, e.g., involving chimeric constructs, is also included in the present invention. In one embodiment, mutagenesis can be guided by known information of the naturally occurring molecule or altered or mutated naturally occurring molecule, e.g., sequence, sequence comparisons, physical properties, crystal structure or the like.
The invention further comprises influenza protein variants which show substantial biological activity, e.g., able to elicit an effective antibody response when expressed on or in a VLP. Such variants include deletions, insertions, inversions, repeats, and substitutions selected according to general rules known in the art so as have little effect on activity.
Methods of cloning said influenza proteins are known in the art. For example, the influenza gene encoding a specific influenza protein can be isolated by RT-PCR from polyadenylated mRNA extracted from cells which had been infected with an influenza virus. The resulting product gene can be cloned as a DNA insert into a vector. The term “vector” refers to the means by which a nucleic acid can be propagated and/or transferred between organisms, cells, or cellular components. Vectors include plasmids, viruses, bacteriophages, pro-viruses, phagemids, transposons, artificial chromosomes, and the like, that replicate autonomously or can integrate into a chromosome of a host cell. A vector can also be a naked RNA polynucleotide, a naked DNA polynucleotide, a polynucleotide composed of both DNA and RNA within the same strand, a poly-lysine-conjugated DNA or RNA, a peptide-conjugated DNA or RNA, a liposome-conjugated DNA, or the like, that is not autonomously replicating. In many, but not all, common embodiments, the vectors of the present invention are plasmids or bacmids.
Thus, the invention comprises nucleotides which encode the HA, NA and/or M1 influenza proteins cloned into an expression vector which can be expressed in a cell which induces the formation of VLPs. An “expression vector” is a vector, such as a plasmid that is capable of promoting expression, as well as replication of a nucleic acid incorporated therein. Typically, the nucleic acid to be expressed is “operably linked” to a promoter and/or enhancer, and is subject to transcription regulatory control by the promoter and/or enhancer. In one embodiment, said nucleotides that encode for HA from an avian, pandemic and/or seasonal influenza virus is selected from the group consisting of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15 and H16. In another embodiment, said nucleotides that encode for NA from an avian, pandemic and/or seasonal influenza virus, is selected from the group consisting of N1, N2, N3, N4, N5, N6, N7, N8 and N9. In another embodiment, said vector comprises of nucleotides that encode the HA, NA and/or M1 influenza protein. In another embodiment, said vector consists of nucleotides that encodes the HA, NA and M1 influenza protein. A preferred expression vector is a baculovirus vector. After the nucleotides encoding said influenza proteins have been cloned said nucleotides can be further manipulated. For example, a person with skill in the art can mutate specific bases in the coding region to produce variants. The variants may contain alterations in the coding regions, non-coding regions, or both. Such variants may increase the immunogenticity of an influenza protein or remove a splice site from a protein or RNA. For example, in one embodiment, the donor and acceptor splicing sites on the influenza M protein (full length) are mutated to prevent splicing of the M mRNA into M1 and M2 transcripts. In another embodiment the HA is engineered to remove or mutate the cleavage site. For example, wild type H5 HA has a cleavage site that contains multiple basic amino acids (RRRKR). This wild type sequence makes the HA more susceptible to multiple ubiquitous proteases that may be present in host or system expression these HAs. In one embodiment, removing these amino acids can reduce the susceptibility of the HA to various proteases. In another embodiment, the cleavage site can be mutated to remove the cleavage site (e.g. mutate to RESR).
The invention also utilizes nucleic acid and polypeptides which encode NA, HA and M1. In one embodiment, an influenza NA nucleic acid or protein is at least 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to SEQ ID NOs 1, 11, 31, 32, 39, 38, 46, 47, 54 or 55. In another embodiment, an influenza HA nucleic acid or protein is at least 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to SEQ ID NOs 2, 10, 56, 57, 58, 27, 28, 29, 30, 37, 36, 33, 34, 35, 42, 43, 44, 45, 50, 51, 52, or 53. In another embodiment, an influenza M1 nucleic acid or protein is at least 85%, 90%, 95%, 96%, 97%, 98% or 99% identical to SEQ ID NOs 12, 40, 41, 48 or 49.
In some embodiments, mutations containing alterations which produce silent substitutions, additions, or deletions, but do not alter the properties or activities of the encoded protein or how the proteins are made. Nucleotide variants can be produced for a variety of reasons, e.g., to optimize codon expression for a particular host (change codons in the human mRNA to those preferred by insect cells such as Sf9 cells). See U.S. patent publication 2005/0118191, herein incorporated by reference in its entirety for all purposes. Examples of optimized codon sequences of the invention are disclosed below (e.g. SEQ ID 42, 44, 46, 48, 50, 52, and 54).
In addition, the nucleotides can be sequenced to ensure that the correct coding regions were cloned and do not contain any unwanted mutations. The nucleotides can be subcloned into an expression vector (e.g. baculovirus) for expression in any cell. The above is only one example of how the influenza viral proteins can be cloned. A person with skill in the art understands that additional methods are available and are possible.
The invention also provides for constructs and/or vectors that comprise avian, pandemic and/or seasonal nucleotides which encode for influenza virus structural genes, including NA, M1 and/or HA. The vector may be, for example, a phage, plasmid, viral, or retroviral vector. The constructs and/or vectors that encodes avian, pandemic and/or seasonal influenza virus structural genes, including NA, M1 and/or HA should be operatively linked to an appropriate promoter, such as the AcMNPV polyhedrin promoter (or other baculovirus), phage lambda PL promoter, the E. coli lac, phoA and tac promoters, the SV40 early and late promoters, and promoters of retroviral LTRs are non-limiting examples. Other suitable promoters will be known to the skilled artisan depending on the host cell and/or the rate of expression desired. The expression constructs will further contain sites for transcription initiation, termination, and, in the transcribed region, a ribosome binding site for translation. The coding portion of the transcripts expressed by the constructs will preferably include a translation initiating codon at the beginning and a termination codon appropriately positioned at the end of the polypeptide to be translated.
The expression vectors will preferably include at least one selectable marker. Such markers include dihydrofolate reductase, G418 or neomycin resistance for eukaryotic cell culture and tetracycline, kanamycin or ampicillin resistance genes for culturing in E. coli and other bacteria. Among vectors preferred are virus vectors, such as baculovirus, poxvirus (e.g., vaccinia virus, avipox virus, canarypox virus, fowlpox virus, raccoonpox virus, swinepox virus, etc.), adenovirus (e.g., canine adenovirus), herpesvirus, and retrovirus. Other vectors that can be used with the invention comprise vectors for use in bacteria, which comprise pQE70, pQE60 and pQE-9, pBluescript vectors, Phagescript vectors, pNH8A, pNH16a, pNH18A, pNH46A, ptrc99a, pKK223-3, pKK233-3, pDR540, pRIT5. Among preferred eukaryotic vectors are pFastBac1 pWINEO, pSV2CAT, pOG44, pXT1 and pSG, pSVK3, pBPV, pMSG, and pSVL. Other suitable vectors will be readily apparent to the skilled artisan. In one embodiment, said vector that comprises nucleotides encoding for avian, pandemic and/or seasonal influenza virus structural genes, including HA, M1 and/or NA, is pFastBac. In another embodiment, said vector that comprises an insert that consists of nucleotides encoding for avian, pandemic and/or seasonal influenza virus structural genes, comprises HA, M1 and NA, is pFastBac.
Next, the recombinant vector can be transfected, infected, or transformed into a suitable host cell. Thus, the invention provides for host cells which comprise a vector (or vectors) that contain nucleic acids which code for HA, M1 and/or NA and permit the expression of HA, M1 and/or NA in said host cell under conditions which allow the formation of VLPs.
In one embodiment, the recombinant constructs mentioned above could be used to transfect, infect, or transform and can express HA, NA and M1 influenza proteins in eukaryotic cells and/or prokaryotic cells. Among eukaryotic host cells are yeast, insect, avian, plant, C. elegans (or nematode) and mammalian host cells. Non limiting examples of insect cells are, Spodoptera frugiperda (Sf) cells, e.g. Sf9, Sf21, Trichoplusia ni cells, e.g. High Five cells, and Drosophila S2 cells. Examples of fungi (including yeast) host cells are S. cerevisiae, Kluyveromyces lactis (K. lactis), species of Candida including C. albicans and C. glabrata, Aspergillus nidulans, Schizosaccharomyces pombe (S. pombe), Pichia pastoris, and Yarrowia lipolytica. Examples of mammalian cells are COS cells, baby hamster kidney cells, mouse L cells, LNCaP cells, Chinese hamster ovary (CHO) cells, human embryonic kidney (HEK) cells, and African green monkey cells, CV1 cells, HeLa cells, MDCK cells, Vero and Hep-2 cells. Xenopus laevis oocytes, or other cells of amphibian origin, may also be used. Prokaryotic host cells include bacterial cells, for example, E. coli, B. subtilis, and mycobacteria.
Vectors, e.g., vectors comprising HA, NA and/or M1 polynucleotides, can be transfected into host cells according to methods well known in the art. For example, introducing nucleic acids into eukaryotic cells can be by calcium phosphate co-precipitation, electroporation, microinjection, lipofection, and transfection employing polyamine transfection reagents. In one embodiment, the said vector is a recombinant baculovirus. In another embodiment, said recombinant baculovirus is transfected into a eukaryotic cell. In a preferred embodiment, said cell is an insect cell. In another embodiment, said insect cell is a Sf9 cell.
In another embodiment, said vector and/or host cell comprise nucleotides which encode an avian, pandemic and/or seasonal influenza virus HA protein selected from the group consisting of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15 and H16. In another embodiment, said vector and/or host cells comprise nucleotides which encode an NA protein which is selected from the group consisting of N1, N2, N3, N4, N5, N6, N7, N8 and N9. In another embodiment, said vector and/or host cell comprises influenza HA, M1 and/or NA. In another embodiment, said vector and/or host cell consists essentially of HA, M1 and/or NA. In a further embodiment, said vector and/or host cell consists of influenza protein comprising HA, M1 and NA. These vector and/or host cell contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said nucleotides encode for an HA and/or the NA that exhibits hemagglutinin activity and/or neuraminidase activity, respectively, when expressed on the surface of VLPs.
This invention also provides for constructs and methods that will increase the efficiency of VLPs production. For example, removing cleavage sites from proteins in order to increase protein expression (see above). Other method comprises the addition of leader sequences to the HA, NA and/or M1 protein for more efficient transporting. For example, a heterologous signal sequence can be fused to the HA, NA and/or M1 influenza protein. In one embodiment, the signal sequence can be derived from the gene of an insect cell and fused to the influenza HA protein (for expression in insect cells). In another embodiment, the signal peptide is the chitinase signal sequence, which works efficiently in baculovirus expression systems. In other embodiment, interchanging leader sequences between influenza proteins can provide better protein transport. For example, it has been shown that H5 hemagglutinin is less efficient at being transported to the surface of particles. H9 hemagglutinins, however, targets the surface and is integrated into the surface more efficiently. Thus, in one embodiment, the H9 leader sequence is fused to the H5 protein.
Another method to increase efficiency of VLP production is to codon optimize the nucleotides that encode HA, NA and/or M1 proteins for a specific cell type. For example, codon optimizing nucleic acids for expression in Sf9 cell (see U.S. patent publication 2005/0118191, herein incorporated by reference in its entirety for all purposes). Examples of optimized codon sequences for Sf9 cells are disclosed below (e.g. SEQ ID 42, 44, 46, 48, 50, 52, and 54). In one embodiment, the nucleic acid sequence of codon optimized influenza protein is at least 85%, 90%, 95%, 96, 97, 98, or 99% to any one of SEQ ID Nos. 42, 44, 46, 48, 50, 52, and 54.
The invention also provides for methods of producing VLPs, said methods comprising expressing an avian, pandemic and/or seasonal influenza proteins under conditions that allow VLP formation. Depending on the expression system and host cell selected, the VLPs are produced by growing host cells transformed by an expression vector under conditions whereby the recombinant proteins are expressed and VLPs are formed. The selection of the appropriate growth conditions is within the skill or a person with skill of one of ordinary skill in the art.
Methods to grow cells engineered to produce VLPs of the invention include, but are not limited to, batch, batch-fed, continuous and perfusion cell culture techniques. Cell culture means the growth and propagation of cells in a bioreactor (a fermentation chamber) where cells propagate and express protein (e.g. recombinant proteins) for purification and isolation. Typically, cell culture is performed under sterile, controlled temperature and atmospheric conditions in a bioreactor. A bioreactor is a chamber used to culture cells in which environmental conditions such as temperature, atmosphere, agitation and/or pH can be monitored. In one embodiment, said bioreactor is a stainless steel chamber. In another embodiment, said bioreactor is a pre-sterilized plastic bag (e.g. Cellbag®, Wave Biotech, Bridgewater, N.J.). In other embodiment, said pre-sterilized plastic bags are about 50 L to 1000 L bags.
The VLPs are then isolated using methods that preserve the integrity thereof, such as by gradient centrifugation, e.g., cesium chloride, sucrose and iodixanol, as well as standard purification techniques including, e.g., ion exchange and gel filtration chromatography.
The following is an example of how VLPs of the invention can be made, isolated and purified. Usually VLPs are produced from recombinant cell lines engineered to create a VLP when said cells are grown in cell culture (see above). Production of VLPs may be accomplished by the scheme illustrated in FIG. 26. A person of skill in the art would understand that there are additional methods that can be utilized to make and purify VLPs of the invention, thus the invention is not limited to the method described.
Production of VLPs of the invention can start by seeding Sf9 cells (non-infected) into shaker flasks, allowing the cells to expand and scaling up as the cells grow and multiply (for example from a 125-ml flask to a 50 L Wave bag). The medium used to grow the cell is formulated for the appropriate cell line (preferably serum free media, e.g. insect medium ExCell-420, JRH). Next, said cells are infected with recombinant baculovirus at the most efficient multiplicity of infection (e.g. from about 1 to about 3 plaque forming units per cell). Once infection has occurred, the influenza HA, NA and M1 proteins are expressed from the virus genome, self assemble into VLPs and are secreted from the cells approximately 24 to 72 hours post infection. Usually, infection is most efficient when the cells are in mid-log phase of growth (4-8×106 cells/ml) and are at least about 90% viable.
VLPs of the invention can be harvested approximately 48 to 96 hours post infection, when the levels of VLPs in the cell culture medium are near the maximum but before extensive cell lysis. The Sf9 cell density and viability at the time of harvest can be about 0.5×106 cells/ml to about 1.5×106 cells/ml with at least 20% viability, as shown by dye exclusion assay. Next, the medium is removed and clarified. NaCl can be added to the medium to a concentration of about 0.4 to about 1.0 M, preferably to about 0.5 M, to avoid VLP aggregation. The removal of cell and cellular debris from the cell culture medium containing VLPs of the invention can be accomplished by tangential flow filtration (TFF) with a single use, pre-sterilized hollow fiber 0.5 or 1.00 μm filter cartridge or a similar device.
Next, VLPs in the clarified culture medium can be concentrated by ultrafiltration using a disposable, pre-sterilized 500,000 molecular weight cut off hollow fiber cartridge. The concentrated VLPs can be diafiltrated against 10 volumes pH 7.0 to 8.0 phosphate-buffered saline (PBS) containing 0.5 M NaCl to remove residual medium components.
The concentrated, diafiltered VLPs can be furthered purified on a 20% to 60% discontinuous sucrose gradient in pH 7.2 PBS buffer with 0.5 M NaCl by centrifugation at 6,500×g for 18 hours at about 4° C. to about 10° C. Usually VLPs will form a distinctive visible band between about 30% to about 40% sucrose or at the interface (in a 20% and 60% step gradient) that can be collected from the gradient and stored. This product can be diluted to comprise 200 mM of NaCl in preparation for the next step in the purification process. This product contains VLPs and may contain intact baculovirus particles.
Further purification of VLPs can be achieved by anion exchange chromatography, or 44% isopycnic sucrose cushion centrifugation. In anion exchange chromatography, the sample from the sucrose gradient (see above) is loaded into column containing a medium with an anion (e.g. Matrix Fractogel EMD TMAE) and eluded via a salt gradient (from about 0.2 M to about 1.0 M of NaCl) that can separate the VLP from other contaminates (e.g. baculovirus and DNA/RNA). In the sucrose cushion method, the sample comprising the VLPs is added to a 44% sucrose cushion and centrifuged for about 18 hours at 30,000 g. VLPs form a band at the top of 44% sucrose, while baculovirus precipitates at the bottom and other contaminating proteins stay in the 0% sucrose layer at the top. The VLP peak or band is collected.
The intact baculovirus can be inactivated, if desired. Inactivation can be accomplished by chemical methods, for example, formalin or β-propyl lactone (BPL). Removal and/or inactivation of intact baculovirus can also be largely accomplished by using selective precipitation and chromatographic methods known in the art, as exemplified above. Methods of inactivation comprise incubating the sample containing the VLPs in 0.2% of BPL for 3 hours at about 25° C. to about 27° C. The baculovirus can also be inactivated by incubating the sample containing the VLPs at 0.05% BPL at 4° C. for 3 days, then at 37° C. for one hour.
After the inactivation/removal step, the product comprising VLPs can be run through another diafiltration step to remove any reagent from the inactivation step and/or any residual sucrose, and to place the VLPs into the desired buffer (e.g. PBS). The solution comprising VLPs can be sterilized by methods known in the art (e.g. sterile filtration) and stored in the refrigerator or freezer.
The above techniques can be practiced across a variety of scales. For example, T-flasks, shake-flasks, spinner bottles, up to industrial sized bioreactors. The bioreactors can comprise either a stainless steel tank or a pre-sterilized plastic bag (for example, the system sold by Wave Biotech, Bridgewater, N.J.). A person with skill in the art will know what is most desirable for their purposes.
Expansion and production of baculovirus expression vectors and infection of cells with recombinant baculovirus to produce recombinant influenza VLPs can be accomplished in insect cells, for example Sf9 insect cells as previously described. In a preferred embodiment, the cells are SF9 infected with recombinant baculovirus engineered to produce influenza VLPs.
Pharmaceutical or Vaccine Formulations and Administration
The pharmaceutical compositions useful herein contain a pharmaceutically acceptable carrier, including any suitable diluent or excipient, which includes any pharmaceutical agent that does not itself induce the production of an immune response harmful to the vertebrate receiving the composition, and which may be administered without undue toxicity and a VLP of the invention. As used herein, the term “pharmaceutically acceptable” means being approved by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopia, European Pharmacopia or other generally recognized pharmacopia for use in vertebrates, and more particularly in humans. These compositions can be useful as a vaccine and/or antigenic compositions for inducing a protective immune response in a vertebrate.
Said pharmaceutical formulations of the invention comprise VLPs comprising an influenza M1, HA and/or NA protein and a pharmaceutically acceptable carrier or excipient. Pharmaceutically acceptable carriers include but are not limited to saline, buffered saline, dextrose, water, glycerol, sterile isotonic aqueous buffer, and combinations thereof. A thorough discussion of pharmaceutically acceptable carriers, diluents, and other excipients is presented in Remington's Pharmaceutical Sciences (Mack Pub. Co. N.J. current edition). The formulation should suit the mode of administration. In a preferred embodiment, the formulation is suitable for administration to humans, preferably is sterile, non-particulate and/or non-pyrogenic.
The composition, if desired, can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. The composition can be a solid form, such as a lyophilized powder suitable for reconstitution, a liquid solution, suspension, emulsion, tablet, pill, capsule, sustained release formulation, or powder. Oral formulation can include standard carriers such as pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, magnesium carbonate, etc.
The invention also provides for a pharmaceutical pack or kit comprising one or more containers filled with one or more of the ingredients of the vaccine formulations of the invention. In a preferred embodiment, the kit comprises two containers, one containing VLPs and the other containing an adjuvant. Associated with such container(s) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceuticals or biological products, which notice reflects approval by the agency of manufacture, use or sale for human administration.
The invention also provides that the VLP formulation be packaged in a hermetically sealed container such as an ampoule or sachette indicating the quantity of composition. In one embodiment, the VLP composition is supplied as a liquid, in another embodiment, as a dry sterilized lyophilized powder or water free concentrate in a hermetically sealed container and can be reconstituted, e.g., with water or saline to the appropriate concentration for administration to a subject. Preferably, the VLP composition is supplied as a dry sterile lyophilized powder in a hermetically sealed container at a unit dosage of preferably, about 1 μg, about 5 μg, about 10 μg, about 20 μg, about 25 μg, about 30 μg, about 50 μg, about 100 μg, about 125 μg, about 150 μg, or about 200 μg. Alternatively, the unit dosage of the VLP composition is less than about 1 μg, (for example about 0.08 μg, about 0.04 μg; about 0.2 μg, about 0.4 μg, about 0.8 μg, about 0.5 μg or less, about 0.25 μg or less, or about 0.1 μg or less), or more than about 125 μg, (for example about 150 μg or more, about 250 μg or more, or about 500 μg or more). These doses may be measured as total VLPs or as μg of HA. The VLP composition should be administered within about 12 hours, preferably within about 6 hours, within about 5 hours, within about 3 hours, or within about 1 hour after being reconstituted from the lyophylized powder.
In an alternative embodiment, a VLP composition is supplied in liquid form in a hermetically sealed container indicating the quantity and concentration of the VLP composition. Preferably, the liquid form of the VLP composition is supplied in a hermetically sealed container at least about 50 μg/ml, more preferably at least about 100 μg/ml, at least about 200 μg/ml, at least 500 μg/ml, or at least 1 mg/ml.
Generally, influenza VLPs of the invention are administered in an effective amount or quantity (as defined above) sufficient to stimulate an immune response against one or more strains of influenza virus. Preferably, administration of the VLP of the invention elicits substantial immunity against at least one influenza virus. Typically, the dose can be adjusted within this range based on, e.g., age, physical condition, body weight, sex, diet, time of administration, and other clinical factors. The prophylactic vaccine formulation is systemically administered, e.g., by subcutaneous or intramuscular injection using a needle and syringe, or a needle-less injection device. Alternatively, the vaccine formulation is administered intranasally, either by drops, large particle aerosol (greater than about 10 microns), or spray into the upper respiratory tract. While any of the above routes of delivery results in an immune response, intranasal administration confers the added benefit of eliciting mucosal immunity at the site of entry of the influenza virus.
Thus, the invention also comprises a method of formulating a vaccine or antigenic composition that induces substantial immunity to influenza virus infection or at least one symptom thereof to a subject, comprising adding to said formulation an effective dose of an influenza VLP.
While stimulation of substantial immunity with a single dose is preferred, additional dosages can be administered, by the same or different route, to achieve the desired effect. In neonates and infants, for example, multiple administrations may be required to elicit sufficient levels of immunity. Administration can continue at intervals throughout childhood, as necessary to maintain sufficient levels of protection against influenza infection. Similarly, adults who are particularly susceptible to repeated or serious influenza infection, such as, for example, health care workers, day care workers, family members of young children, the elderly, and individuals with compromised cardiopulmonary function may require multiple immunizations to establish and/or maintain protective immune responses. Levels of induced immunity can be monitored, for example, by measuring amounts of neutralizing secretory and serum antibodies, and dosages adjusted or vaccinations repeated as necessary to elicit and maintain desired levels of protection.
Thus, in one embodiment, a method to induce substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP comprises influenza HA, NA and M1 proteins. In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists essentially of influenza HA, NA and M1. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of influenza HA, NA and M1. In another embodiment, said influenza HA, NA and M1 is derived from seasonal influenza and/or avian influenza virus. In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In another embodiment, the method comprises inducing substantial immunity to influenza virus infection or at least one symptom thereof by administering said formulation in one dose. In another embodiment, the method comprises inducing substantial immunity to influenza virus infection or at least one symptom thereof by administering said formulation in multiple doses.
Methods of administering a composition comprising VLPs (vaccine and/or antigenic formulations) include, but are not limited to, parenteral administration (e.g., intradermal, intramuscular, intravenous and subcutaneous), epidural, and mucosal (e.g., intranasal and oral or pulmonary routes or by suppositories). In a specific embodiment, compositions of the present invention are administered intramuscularly, intravenously, subcutaneously, transdermally or intradermally. The compositions may be administered by any convenient route, for example by infusion or bolus injection, by absorption through epithelial or mucocutaneous linings (e.g., oral mucous, colon, conjunctiva, nasopharynx, oropharynx, vagina, urethra, urinary bladder and intestinal mucosa, etc.) and may be administered together with other biologically active agents. In some embodiments, intranasal or other mucosal routes of administration of a composition comprising VLPs of the invention may induce an antibody or other immune response that is substantially higher than other routes of administration. In another embodiment, intranasal or other mucosal routes of administration of a composition comprising VLPs of the invention may induce an antibody or other immune response that will induce cross protection against other strains of influenza viruses. Administration can be systemic or local.
In yet another embodiment, the vaccine and/or antigenic formulation is administered in such a manner as to target mucosal tissues in order to elicit an immune response at the site of immunization. For example, mucosal tissues such as gut associated lymphoid tissue (GALT) can be targeted for immunization by using oral administration of compositions which contain adjuvants with particular mucosal targeting properties. Additional mucosal tissues can also be targeted, such as nasopharyngeal lymphoid tissue (NALT) and bronchial-associated lymphoid tissue (BALT).
Vaccines and/or antigentic formulations of the invention may also be administered on a dosage schedule, for example, an initial administration of the vaccine composition with subsequent booster administrations. In particular embodiments, a second dose of the composition is administered anywhere from two weeks to one year, preferably from about 1, about 2, about 3, about 4, about 5 to about 6 months, after the initial administration. Additionally, a third dose may be administered after the second dose and from about three months to about two years, or even longer, preferably about 4, about 5, or about 6 months, or about 7 months to about one year after the initial administration. The third dose may be optionally administered when no or low levels of specific immunoglobulins are detected in the serum and/or urine or mucosal secretions of the subject after the second dose. In a preferred embodiment, a second dose is administered about one month after the first administration and a third dose is administered about six months after the first administration. In another embodiment, the second dose is administered about six months after the first administration.
In another embodiment, said VLP of the invention can be administered as part of a combination therapy. For example, VLPs of the invention can be formulated with other immunogenic compositions and/or antivirals (e.g. Amantadine, Rimantadine, Zanamivir and Osteltamivir).
The dosage of the pharmaceutical formulation can be determined readily by the skilled artisan, for example, by first identifying doses effective to elicit a prophylactic or therapeutic immune response, e.g., by measuring the serum titer of virus specific immunoglobulins or by measuring the inhibitory ratio of antibodies in serum samples, or urine samples, or mucosal secretions. Said dosages can be determined from animal studies. A non-limiting list of animals used to study the influenza virus include the guinea pig, Syrian hamster, chinchilla, hedgehog, chicken, rat, mouse and ferret. Most animals are not natural hosts to influenza viruses but can still serve in studies of various aspects of the disease. For example, any of the above animals can be dosed with a vaccine candidate, e.g. VLPs of the invention, to partially characterize the immune response induced, and/or to determine if any neutralizing antibodies have been produced. For example, many studies have been conducted in the mouse model because mice are small size and their low cost allows researchers to conduct studies on a larger scale. Nevertheless, the mouse's small size also increases the difficulty of readily observing any clinical signs of the disease and the mouse is not a predictive model for disease in humans.
There has been extensive use of ferrets for studying various aspects of human influenza viral infection and its course of action. The development of many of the contemporary concepts of immunity to the influenza virus would have been impossible without the use of the ferret (Maher et al. 2004). Ferrets have proven to be a good model for studying influenza for several reasons: influenza infection in the ferret closely resembles that in humans with respect to clinical signs, pathogenesis, and immunity; types A and B of human influenza virus naturally infect the ferret, thus providing an opportunity to study a completely controlled population in which to observe the interplay of transmission of infection, illness, and sequence variation of amino acids in the glycoproteins of the influenza virus; and ferrets have other physical characteristics that make it an ideal model for deciphering the manifestations of the disease. For example, ferrets and humans show very similar clinical signs of influenza infection that seem to depend on the age of the host, the strain of the virus, environmental conditions, the degree of secondary bacterial infection, and many other variables. Thus, one skilled in the art can more easily correlate the efficacy of an influenza vaccine and dosage regiments from a ferret model to humans as compared to a mouse or any other model described above.
In addition, human clinical studies can be performed to determine the preferred effective dose for humans by a skilled artisan. Such clinical studies are routine and well known in the art. The precise dose to be employed will also depend on the route of administration. Effective doses may be extrapolated from dose-response curves derived from in vitro or animal test systems.
As also well known in the art, the immunogenicity of a particular composition can be enhanced by the use of non-specific stimulators of the immune response, known as adjuvants. Adjuvants have been used experimentally to promote a generalized increase in immunity against unknown antigens (e.g., U.S. Pat. No. 4,877,611). Immunization protocols have used adjuvants to stimulate responses for many years, and as such, adjuvants are well known to one of ordinary skill in the art. Some adjuvants affect the way in which antigens are presented. For example, the immune response is increased when protein antigens are precipitated by alum. Emulsification of antigens also prolongs the duration of antigen presentation. The inclusion of any adjuvant described in Vogel et al., “A Compendium of Vaccine Adjuvants and Excipients (2nd Edition),” herein incorporated by reference in its entirety for all purposes, is envisioned within the scope of this invention.
Exemplary, adjuvants include complete Freund's adjuvant (a non-specific stimulator of the immune response containing killed Mycobacterium tuberculosis), incomplete Freund's adjuvants and aluminum hydroxide adjuvant. Other adjuvants comprise GMCSP, BCG, aluminum hydroxide, MDP compounds, such as thur-MDP and nor-MDP, CGP (MTP-PE), lipid A, and monophosphoryl lipid A (MPL). RIBI, which contains three components extracted from bacteria, MPL, trehalose dimycolate (TDM) and cell wall skeleton (CWS) in a 2% squalene/Tween 80 emulsion also is contemplated. MF-59, Novasomes®, MHC antigens may also be used.
In one embodiment of the invention the adjuvant is a paucilamellar lipid vesicle having about two to ten bilayers arranged in the form of substantially spherical shells separated by aqueous layers surrounding a large amorphous central cavity free of lipid bilayers. Paucilamellar lipid vesicles may act to stimulate the immune response several ways, as non-specific stimulators, as carriers for the antigen, as carriers of additional adjuvants, and combinations thereof. Paucilamellar lipid vesicles act as non-specific immune stimulators when, for example, a vaccine is prepared by intermixing the antigen with the preformed vesicles such that the antigen remains extracellular to the vesicles. By encapsulating an antigen within the central cavity of the vesicle, the vesicle acts both as an immune stimulator and a carrier for the antigen. In another embodiment, the vesicles are primarily made of nonphospholipid vesicles. In other embodiment, the vesicles are Novasomes. Novasomes® are paucilamellar nonphospholipid vesicles ranging from about 100 nm to about 500 nm. They comprise Brij 72, cholesterol, oleic acid and squalene. Novasomes have been shown to be -an effective adjuvant for influenza antigens (see, U.S. Pat. Nos. 5,629,021, 6,387,373, and 4,911,928, herein incorporated by reference in their entireties for all purposes).
In one aspect, an adjuvant effect is achieved by use of an agent, such as alum, used in about 0.05 to about 0.1% solution in phosphate buffered saline. Alternatively, the VLPs can be made as an admixture with synthetic polymers of sugars (Carbopol®) used as an about 0.25% solution. Some adjuvants, for example, certain organic molecules obtained from bacteria; act on the host rather than on the antigen. An example is muramyl dipeptide (N-acetylmuramyl-L-alanyl-D-isoglutamine [MDP]), a bacterial peptidoglycan. In other embodiments, hemocyanins and hemoerythrins may also be used with VLPs of the invention. The use of hemocyanin from keyhole limpet (KLH) is preferred in certain embodiments, although other molluscan and arthropod hemocyanins and hemoerythrins may be employed.
Various polysaccharide adjuvants may also be used. For example, the use of various pneumococcal polysaccharide adjuvants on the antibody responses of mice has been described (Yin et al., 1989). The doses that produce optimal responses, or that otherwise do not produce suppression, should be employed as indicated (Yin et al., 1989). Polyamine varieties of polysaccharides are particularly preferred, such as chitin and chitosan, including deacetylated chitin. In another embodiment, a lipophilic disaccharide-tripeptide derivative of muramyl dipeptide which is described for use in artificial liposomes formed from phosphatidyl choline and phosphatidyl glycerol.
Amphipathic and surface active agents, e.g., saponin and derivatives such as QS21 (Cambridge Biotech), form yet another group of adjuvants for use with the VLPs of the invention. Nonionic block copolymer surfactants (Rabinovich et al., 1994) may also be employed. Oligonucleotides are another useful group of adjuvants (Yamamoto et al., 1988). Quil A and lentinen are other adjuvants that may be used in certain embodiments of the present invention.
Another group of adjuvants are the detoxified endotoxins, such as the refined detoxified endotoxin of U.S. Pat. No. 4,866,034. These refined detoxified endotoxins are effective in producing adjuvant responses in vertebrates. Of course, the detoxified endotoxins may be combined with other adjuvants to prepare multi-adjuvant formulation. For example, combination of detoxified endotoxins with trehalose dimycolate is particularly contemplated, as described in U.S. Pat. No. 4,435,386. Combinations of detoxified endotoxins with trehalose dimycolate and endotoxic glycolipids is also contemplated (U.S. Pat. No. 4,505,899), as is combination of detoxified endotoxins with cell wall skeleton (CWS) or CWS and trehalose dimycolate, as described in U.S. Pat. Nos. 4,436,727, 4,436,728 and 4,505,900. Combinations of just CWS and trehalose dimycolate, without detoxified endotoxins, is also envisioned to be useful, as described in U.S. Pat. No. 4,520,019.
Those of skill in the art will know the different kinds of adjuvants that can be conjugated to vaccines in accordance with this invention and these include alkyl lysophosphilipids (ALP); BCG; and biotin (including biotinylated derivatives) among others. Certain adjuvants particularly contemplated for use are the teichoic acids from Gram-cells. These include the lipoteichoic acids (LTA), ribitol teichoic acids (RTA) and glycerol teichoic acid (GTA). Active forms of their synthetic counterparts may also be employed in connection with the invention (Takada et al., 1995).
Various adjuvants, even those that are not commonly used in humans, may still be employed in other vertebrates, where, for example, one desires to raise antibodies or to subsequently obtain activated T cells. The toxicity or other adverse effects that may result from either the adjuvant or the cells, e.g., as may occur using non-irradiated tumor cells, is irrelevant in such circumstances.
Another method of inducing an immune response can be accomplished by formulating the VLPs of the invention with “immune stimulators.” These are the body's own chemical messengers (cytokines) to increase the immune system's response. Immune stimulators include, but not limited to, various cytokines, lymphokines and chemokines with immunostimulatory, immunopotentiating, and pro-inflammatory activities, such as interleukins (e.g., IL-1, IL-2, IL-3, IL-4, IL-12, IL-13); growth factors (e.g., granulocyte-macrophage (GM)-colony stimulating factor (CSF)); and other immunostimulatory molecules, such as macrophage inflammatory factor, Flt3 ligand, B7.1; B7.2, etc. The immunostimulatory molecules can be administered in the same formulation as the influenza VLPs, or can be administered separately. Either the protein or an expression vector encoding the protein can be administered to produce an immunostimulatory effect.
Method of Stimulating an Anti-Influenza Immune Response
The VLPs of the invention are useful for preparing compositions that stimulate an immune response that confers immunity or substantial immunity to influenza viruses. Both mucosal and cellular immunity may contribute to immunity to influenza infection and disease. Antibodies secreted locally in the upper respiratory tract are a major factor in resistance to natural infection. Secretory immunoglobulin A (sIgA) is involved in protection of the upper respiratory tract and serum IgG in protection of the lower respiratory tract. The immune response induced by an infection protects against reinfection with the same virus or an antigenically similar viral strain. Influenza virus undergoes frequent and unpredictable changes; therefore, after natural infection, the effective period of protection provided by the host's immunity may only be a few years against the new strains of virus circulating in the community.
VLPs of the invention can induce substantial immunity in a vertebrate (e.g. a human) when administered to said vertebrate. The substantial immunity results from an immune response against the influenza VLP of the invention that protects or ameleorates influenza infection or at least reduces a symptom of influenza virus infection in said vertebrate. In some instances, if the said vertebrate is infected, said infection will be asymptomatic. The response may be not a fully protective response. In this case, if said vertebrate is infected with an influenza virus, the vertebrate will experience reduced symptoms or a shorter duration of symptoms compared to a non-immunized vertebrate.
In one embodiment, the invention comprises a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP. In another embodiment, said induction of substantial immunity reduces duration of influenza symptoms. In another embodiment, a method to induce substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP comprises influenza HA, NA and M1 proteins. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists essentially of influenza HA, NA and M1. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of influenza HA, NA and M1. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator.
Recently there has been a concerted effort to create a vaccine against avian influenza virus that has the potential to create a pandemic. That is because a number of avian influenza viruses have crossed the species barrier and directly infected humans resulting in illness and, in some cases, death. These viruses were H5N1, H9N2 and H7N7 (Cox et al., 2004). A recent study examined the potential of using inactivated H5N1 influenza virus as a vaccine. The formulation of the vaccine was similar to the licensed inactivated vaccines currently licensed for marketing. The study concluded that using inactivated H5N1 virus did induce an immune response in humans, however the dose given was very high (90 μg of avian influenza compared to 15 μg of the licensed vaccine) (Treanor et al., 2006). This high amount of avian influenza antigen is impractical for a worldwide vaccination campaign. As illustrated below, the VLPs of the invention induces an immune response in a vertebrate when administered to said vertebrate.
Thus, the invention encompasses a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an avian influenza VLP. In another embodiment, said induction of substantial immunity reduces duration of influenza symptoms. In another embodiment, said induction of immunity is from administering at least 0.2 μg of avian HA in VLPs of the invention. In another embodiment, said induction of immunity is from administering about 0.2 μg of avian HA to about 15 μg of avian HA in VLPs of the invention. Administration may be in one or more doses, but may be advantageously in a single dose. In another embodiment, said VLP avian HA is derived from avian influenza H5N1.
In another embodiment, the invention comprises a method of inducing substantial immunity to avian influenza virus infection or at least one symptom thereof in a subject comprising administering at least one effective dose of an avian influenza VLP, wherein said VLP comprises an avian influenza HA, NA and M1. In another embodiment, said avian influenza VLP comprises avian influenza proteins, wherein said avian influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc. but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said method of inducing substantial immunity to avian influenza virus infection or at least one symptom thereof in a subject comprises administering at least one effective dose of an avian influenza VLP, wherein said VLP consists essentially of avian influenza HA, NA and M1. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, a method to induce substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of avian influenza HA, NA and M1. In another embodiment, said avian influenza HA and NA are H5N1, respectively. In another embodiment, said avian influenza HA and NA are H9N2, respectively. In another embodiment, said avian influenza HA and NA are H7N7, respectively. In another embodiment, said avian influenza HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator.
In another embodiment, said avian influenza VLPs will induce an immune response in a vertebrate that is about 2 fold, about 4 fold, about 8 fold, about 16 fold, about 32 fold about 64 fold, about 128 fold increase (or higher) more potent than a similar avian influenza antigens formulated similarly to the licensed inactivated vaccines currently licensed for marketing. Current formulations comprise whole inactivated virus (e.g. formaldehyde treated), split virus (chemically disrupted), and subunit (purified glycoprotein) vaccines. Methods for determining potency for a vaccine are known and routine in the art. For example, microneutralization assays and hemagglutination inhibition assays can be performed to determine potency of an avian VLP vaccine compared to avian influenza antigens formulated similar to the licensed inactivated vaccines currently licensed for marketing. In one embodiment, said increase in potency is realized when about 0.2 μg, about 0.4 μg, about 0.6 μg about 0.8 μg, about 1 μg, about 2 μg, about 3 μg, about 4 μg, about 5 μg, about 6 μg, about 7 μg, about 9 μg, about 10 μg, about 15 μg, about 20 μg, about 25 μg, about 30 μg, about 35 μg, 40 μg, about 45 μg, about 50 μg, or higher of VLPs and the antigen formulated similarly to the inactivated vaccines currently licensed for marketing is administered to a vertebrate (i.e. equivalent amounts of HA and/or NA in a VLP with equivalent amounts of HA and/or NA formulated in similarly to the licensed inactivated vaccines and/or any other antigen) Amounts can be measured according to HA content. For example, 1 μg of a VLP of the invention is about 1 μg of HA in a solution of VLPs comprising HA or may be measured by weight of VLPs.
Seasonal influenza vaccines are administered to humans every year to reduce the incidence of influenza cases every year. At present, there are two subtypes of influenza A and influenza B circulating in the United States. Current vaccines are, therefore, trivalent to provide protection against the strains currently circulating. Each year a different stain or variation of an influenza viral changes. Thus, for most years a new vaccine composition is manufactured and administered. Inactivated vaccines are produced by propagation of the virus in embryonated hens' eggs. The allantoic fluid is harvested, and the virus is concentrated and purified, then inactivated. Thus, the current licensed influenza virus vaccines may contain trace amounts of residual egg proteins and, therefore, should not be administered to persons who have anaphylactic hypersensitivity to eggs. In addition, supplies of eggs must be organized and strains for vaccine production must be selected months in advance of the next influenza season, thus limiting the flexibility of this approach and often resulting in delays and shortages in production and distribution. In addition, some influenza strains do not replicate well in embryonated chicken eggs which may limit the influenza strains which can be grown and formulated into vaccines.
As mentioned above, VLP of the invention do not require eggs for production. These VLPs are made via a cell culture system. Thus, the invention encompasses a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of a seasonal influenza VLP. A discussed above, seasonal influenza virus refers to the influenza viral strains that has been determined to be passing within the human population for a given influenza season based on the epidemiological surveys by National Influenza Centers worldwide. Said studies and some isolated influenza viruses are sent to one of four World Health Organization (WHO) reference laboratories, one of which is located at the Centers for Disease Control and Prevention (CDC) in Atlanta, for detailed testing. These laboratories test how well antibodies made to the current vaccine react to the circulating virus and new flu viruses. This information, along with information about flu activity, is summarized and presented to an advisory committee of the U.S. Food and Drug Administration (FDA) and at a WHO meeting. These meetings result in the selection of three viruses (two subtypes of influenza A viruses and one influenza B virus) to go into flu vaccines for the following fall and winter. The selection occurs in February for the northern hemisphere and in September for the southern hemisphere. Usually, one or two of the three virus strains in the vaccine changes each year. In another embodiment, said induction of substantial immunity reduces duration of influenza symptoms.
In another embodiment, the invention comprises a method of inducing substantial immunity to a seasonal influenza virus infection or at least one symptom thereof in a subject comprising administering at least one effective dose of a seasonal influenza VLP, wherein said VLP comprises a seasonal influenza HA, NA and M1. In another embodiment, said seasonal influenza VLP comprises seasonal influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc. but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said method of inducing substantial immunity to seasonal influenza virus infection or at least one symptom thereof in a subject comprises administering at least one effective dose of a seasonal influenza VLP, wherein said VLP consists essentially of seasonal influenza HA, NA and M1. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, a method to induce substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of seasonal influenza HA, NA and M1. In another embodiment, said avian influenza HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator.
Generally, seasonal influenza VLPs of the invention are administered in a quantity sufficient to stimulate substantial immunity for one or more strains of seasonal influenza virus. In one embodiment, the VLPs are blended together with other VLPs comprising different influenza subtypes proteins (as listed above). In another embodiment, the formulation is a trivalent formulation which comprises a mixture of VLPs with seasonal influenza HA and/or NA proteins from at least two influenza A and/or one at least one B subtype. In another embodiment, said B subtype is produced by the same method as described above. In another embodiment, a multivalent formulation comprises one or more of the VLP of the invention as described above.
In another embodiment, VLPs of the invention (avian or seasonal VLPs) may elicit an immune response that will provide protection against more than one strain of influenza virus. This cross-protection of a vertebrate with an influenza VLP constructed from a particular strain, of a particular subgroup, may induce cross-protection against influenza virus of different strains and/or subgroups. The examples below show that VLPs of the invention are capable of inducing cross reactivity with different strains and/or subgroups.
The humoral immune system produces antibodies against different influenza antigens, of which the HA-specific antibody is the most important for neutralization of the virus and thus prevention of illness. The NA-specific antibodies are less effective in preventing infection, but they lessen the release of virus from infected cells. The mucosal tissues are the main portal entry of many pathogens, including influenza, and the mucosal immune system provides the first line of defense against infection apart from innate immunity. SIgA and, to some extent, IgM are the major neutralizing antibodies directed against mucosal pathogens preventing pathogen entry and can function intracellularly to inhibit replication of virus. Nasal secretions contain neutralizing antibodies particularly to influenza HA and NA, which are primarily of the IgA isotype and are produced locally. During primary infection, all three major Ig classes (IgG, IgA and IgM) specific to HA can be detected by enzyme-linked immunosorbent assay in nasal washings, although IgA and IgM are more frequently detected than IgG. Both IgA and, to some extent, IgM are actively secreted locally, whereas IgG is derived as a serum secretion. In subjects who have a local IgA response, a serum IgA response also is observed. The local IgA response stimulated by natural infection lasts for at least 3-5 months, and influenza-specific, IgA-committed memory cells can be detected locally. IgA also is the predominant Ig isotype in local secretions after secondary infection, and an IgA response is detected in the serum upon subsequent infection. The presence of locally produced neutralizing antibodies induced by live virus vaccine correlates with resistance to infection and illness after challenge with wild-type virus.
Resistance to influenza infection or illness is correlated with the level of local and/or serum antibody to HA and NA. Serum anti-HA antibodies are the most commonly measured correlate of protection against influenza (Cox et al., 1999). A protective serum antibody (haemagglutination inhibition (HI) titer≧40) response can be detected in approximately 80% of subjects after natural influenza infection. B cells producing all three major Ig classes are present in the peripheral blood in normal subjects (Cox et al., 1994) and individuals undergoing influenza infection. In humans, serum antibodies play a role in both resistance to and recovery from influenza infection. The level of serum antibody to HA and NA in humans can be correlated with resistance to illness following experimental infection and natural infection. During primary infection, the three major Ig classes can be detected within 10-14 days. IgA and IgM levels peak after 2 weeks and then begin to decline, whereas the level of IgG peaks at 4-6 weeks. Whereas IgG and IgM are dominant in the primary response, IgG and IgA predominate in the secondary immune response.
Thus, the invention encompasses a method of inducing a substantially protective antibody response to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP. In another embodiment, said induction of substantially protective antibody response reduces duration of influenza symptoms. In another embodiment, a method to induce substantially protective antibody response to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP comprises influenza HA, NA and M1 proteins.
In another embodiment, the invention comprises a method of inducing substantially protective antibody response to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists essentially of influenza HA, NA and M1. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of influenza HA, NA and M1. In another embodiment, wherein said influenza HA, NA and M1 is derived from seasonal influenza and/or avian influenza. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator.
As used herein, an “antibody” is a protein comprising one or more polypeptides substantially or partially encoded by immunoglobulin genes or fragments of immunoglobulin genes. The recognized immunoglobulin genes include the kappa, lambda, alpha, gamma, delta, epsilon and mu constant region genes, as well as myriad immunoglobulin variable region genes. Light chains are classified as either kappa or lambda. Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, which in turn define the immunoglobulin classes, IgG, IgM, IgA, IgD and IgE, respectively. A typical immunoglobulin (antibody) structural unit comprises a tetramer. Each tetramer is composed of two identical pairs of polypeptide chains, each pair having one “light” (about 25 kD) and one “heavy” chain (about 50-70 kD). The N-terminus of each chain defines a variable region of about 100 to 110 or more amino acids primarily responsible for antigen recognition. Antibodies exist as intact immunoglobulins or as a number of well-characterized fragments produced by digestion with various peptidases.
Cell-mediated immunity also plays a role in recovery from influenza infection and may prevent influenza-associated complications. Influenza-specific cellular lymphocytes have been detected in the blood and the lower respiratory tract secretions of infected subjects. Cytolysis of influenza-infected cells is mediated by CTLs in concert with influenza-specific antibodies and complement. The primary cytotoxic response is detectable in blood after 6-14 days and disappears by day 21 in infected or vaccinated individuals (Ennis et al., 1981). Influenza-specific CTLs exhibit cross-reactive specificities in in vitro cultures; thus, they lyse cells infected with the same type of influenza but not with other types (e.g. influenza A but not influenza B virus). CTLs that recognize the internal nonglycosylated proteins, M, NP and PB2 have been isolated (Fleischer et al., 1985). The CTL response is cross-reactive between influenza A strains (Gerhard et al., 2001) and is important in minimizing viral spread in combination with antibody (Nguyen et al., 2001).
Cell-mediated immunity also plays a role in recovery from influenza infection and may prevent influenza-associated complications. Influenza-specific cellular lymphocytes have been detected in the blood and the lower respiratory tract secretions of infected subjects. Cytolysis of influenza-infected cells is mediated by CTLs in concert with influenza-specific antibodies and complement. The primary cytotoxic response is detectable in blood after 6-14 days and disappears by day 21 in infected or vaccinated individuals (Ennis et al., 1981). Influenza-specific CTLs exhibit cross-reactive specificities in in vitro cultures; thus, they lyse cells infected with the same type of influenza but not with other types (e.g. influenza A but not influenza B virus). CTLs that recognize the internal nonglycosylated proteins, M, NP and PB2 have been isolated(Fleischer et al., (1985). The CTL response is cross-reactive between influenza A strains (Gerhard et al., 2001) and is important in minimizing viral spread in combination with antibody (Nguyen et al., 2001).
Thus, the invention encompasses a method of inducing a substantially protective cellular immune response to influenza virus infection or at least one symptom thereof in a subject, comprising administering at least one effective dose of an influenza VLP. In another embodiment, a method of inducing substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises administering at least one effective dose of an influenza VLP, wherein said VLP consists of influenza HA, NA and M1. In another embodiment, said influenza VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc. but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment wherein said influenza HA, NA and M1 is derived from seasonal influenza and/or avian influenza virus. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator.
As mentioned above, the VLPs of the invention (e.g. avian and/or seasonal influenza VLPs) prevent or reduce at least one symptom of influenza infection in a subject. Symptoms of influenza are well known in the art. They include fever, myalgia, headache, severe malaise, nonproductive cough, sore throat, weight loss and rhinitis. Thus, the method of the invention comprises the prevention or reduction of at least one symptom associated with influenza viral infection. A reduction in a symptom may be determined subjectively or objectively, e.g., self assessment by a subject, by a clinician's assessment or by conducting an appropriate assay or measurement (e.g. body temperature), including, e.g., a quality of life assessment, a slowed progression of an influenza infection or additional symptoms, a reduced severity of a influenza symptoms or a suitable assays (e.g. antibody titer and/or T-cell activation assay). The objective assessment comprises both animal and human assessments.
The principal strategy advocated by the Advisory Committee on Immunization Practices (ACIP) for control of influenza has been the vaccination of persons at risk for serious complications from influenza, in particular, people≧65 years old. Yearly influenza epidemics, however, continue unabated and are responsible for significant health and financial burden to our society (Glaser et al., 1996). In the last 20 years (1976-1999), a significant increase has occurred in influenza-associated all cause excess deaths. From 1990 to 1999, the annual number of influenza-associated all cause deaths exceeded 50,000 (Thompson et al., 2003). Despite the increase in vaccine coverage of people≧65 years to 65% during the last decade, a corresponding reduction in influenza-associated all cause excess deaths has not been observed.
Thus, another strategy for the prevention and control of influenza is universal vaccination of healthy children and individuals. Children have high rates of infection, medically attended illness and hospitalization from influenza (Neuzil et al., 2000). Children play an important role in the transmission of influenza within schools, families and communities. Vaccination with current influenza vaccines of approximately 80% of schoolchildren in a community has decreased respiratory illnesses in adults and excess deaths in the elderly (Reichert et al., 2001). This concept is known as community immunity or “herd immunity” and is thought to play an important part of protecting the community against disease. Because vaccinated people have antibodies that neutralize influenza virus, they are much less likely to transmit influenza virus to other people. Thus, even people who have not been vaccinated (and those whose vaccinations have become weakened or whose vaccines are not fully effective) often can be shielded by the herd immunity because vaccinated people around them are not getting sick. Herd immunity is more effective as the percentage of people vaccinated increases. It is thought that approximately 95% of the people in the community must be protected by a vaccine to achieve herd immunity. People who are not immunized increase the chance that they and others will get the disease.
Thus, the invention encompasses a method of inducing a substantially protective immunity to influenza virus infection to a population or a community in order to reduce the incidence of influenza virus infections among immunocompromised individuals or non-vaccinated individual buy administering VLPs of the invention to a population in a community. In one embodiment, most school-aged children are immunized against influenza virus by administering the VLPs of the invention. In another embodiment, most healthy individuals in a community to are immunized against influenza virus by administering the VLPs of the invention. In another embodiment VLPs of the invention are part of a “dynamic vaccination” strategy. Dynamic vaccination is the steady production of a low-efficacy vaccine that is related to an emerging pandemic strain, but due to an antigentic drift may not provide complete protection in a mammal (see Germann et al., 2006). Because of the uncertainty about the future identity of a pandemic strain, it is almost impossible to stockpile a well matched pandemic strain. However, vaccination with a poorly matched but potentially efficacious vaccine may slow the spread of the pandemic virus and/or reduce the severity of symptoms of a pandemic strain of influenza virus.
The invention also encompasses a vaccine comprising an influenza VLP, wherein said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof when administered to a subject. In another embodiment, said induction of substantial immunity reduces duration of influenza symptoms. In another embodiment, a said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises a VLP which comprises influenza HA, NA and M1 proteins. In another embodiment, a said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises a VLP which consists essentially of influenza HA, NA and M1 proteins. Said VLPs may comprise additional influenza proteins and/or protein contaminates in negligible concentrations. In another embodiment, a said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises a VLP which consists of influenza HA, NA and M1 proteins. In another embodiment, a said vaccine induces substantial immunity to influenza virus infection or at least one symptom thereof in a subject, comprises a VLP comprises influenza proteins, wherein said influenza proteins consist of HA, NA and M1 proteins. These VLPs contain HA, NA and M1 and may contain additional cellular constituents such as cellular proteins, baculovirus proteins, lipids, carbohydrates etc., but do not contain additional influenza proteins (other than fragments of M1, HA and/or NA). In another embodiment, said influenza HA, NA and M1 proteins are derived from an avian and/or seasonal influenza virus. In another embodiment, said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectfully. In another embodiment, said subject is a mammal. In another embodiment, said mammal is a human. In a further embodiment, said VLP is formulated with an adjuvant or immune stimulator. In another embodiment, where said vaccine is administered to a mammal. In a further embodiment, said mammal is a human.
This invention is further illustrated by the following examples which should not be construed as limiting. The contents of all references, patents and published patent applications cited throughout this application, as well as the Figures and the Sequence Listing, are incorporated herein by reference.
EXAMPLES
Example 1
Materials and Methods
Avian influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 genes were expressed in Spodoptera frugiperda cells (Sf-9S cell line; ATCC PTA-4047) using the baculovirus bacmid expression system. The HA, NA, and M1 genes were synthesized by the reverse transcription and polymerase chain reaction (PCR) using RNA isolated from avian influenza A/Hong Kong/1073/99 (H9N2) virus (FIGS. 1, 2, and 3). For reverse transcription and PCR, oligonucleotide primers specific for avian influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 genes were used (Table 1). The cDNA copies of these genes were cloned initially into the bacterial subcloning vector, pCR2.1TOPO. From the resulting three pCR2.1TOPO-based plasmids, the HA, NA, and M1 genes were inserted downstream of the AcMNPV polyhedrin promoters in the baculovirus transfer vector, pFastBac1 (InVitrogen), resulting in three pFastBac1-based plasmids: pHA, pNA, and pM1 expressing these influenza virus genes, respectively. Then, a single pFastBac1-based plasmid PHAM was constructed encoding both the HA and M1 genes, each downstream from a separate polyhedrin promoter (FIG. 4). The nucleotide sequence of the NA gene with the adjacent 5′- and 3′-regions within the pNA plasmid was determined (SEQ ID NO:1) (FIG. 1). At the same time, the nucleotide sequences of the HA and M1 genes with the adjacent regions were also determined using the pHAM plasmid (SEQ ID NOS:2 and 3) (FIGS. 2 and 3).
Finally, a restriction DNA fragment from the pHAM plasmid that encoded both the HA and M1 expression cassettes was cloned into the pNA plasmid. This resulted in the plasmid pNAHAM encoding avian influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 genes (FIG. 4).
Plasmid pNAHAM was used to construct a recombinant baculovirus containing influenza virus NA, HA, and M1 genes integrated into the genome, each downstream from a separate baculovirus polyhedrin promoter. Infection of permissive Sf-9S insect cells with the resulting recombinant baculovirus resulted in co-expression of these three influenza genes in each Sf-9S cell infected with such recombinant baculovirus.
The expression products in infected Sf-9S cells were characterized at 72 hr postinfection (p.i. by SDS-PAGE analysis, Coomassie blue protein staining, and Western immunoblot analysis using HA- and M1-specific antibodies (FIG. 5). Western immunoblot analysis was carried out using rabbit antibody raised against influenza virus type A/Hong Kong/1073/99 (H9N2) (CDC, Atlanta, Ga., USA), or mouse monoclonal antibody to influenza M1 protein (Serotec, UK). The HA, NA, and M1 proteins of the expected molecular weights (64 kd, 60 kd, and 31 kd, respectively) were detected by Western immunoblot analysis. Compared to the amount of HA protein detected in this assay, the NA protein showed lower reactivity with rabbit serum to influenza A/Hong Kong/1073/99 (H9N2) virus. Explanations for the amount of detectable NA protein included lower expression levels of the NA protein from Sf-9S cells infected with recombinant baculovirus as compared to the HA protein, lower reactivity of the NA with this serum under denaturing conditions in the Western immunoblot assay (due to the elimination of important NA epitopes during gel electrophoresis of membrane binding), lower NA-antibody avidity as compared to HA-antibody, or a lower abundance of NA-antibodies in the serum.
The culture medium from the Sf-9S cells infected with recombinant baculovirus expressing A/Hong Kong/1073/99 (H9N2) HA, NA, and M1 proteins was also probed for influenza proteins. The clarified culture supernatants were subjected to ultracentrifugation at 27,000 rpm in order to concentrate high-molecular protein complexes of influenza virus, such as subviral particles, VLP, complexes of VLP, and possibly, other self-assembled particulates comprised of influenza HA, NA, and M1 proteins. Pelleted protein products were resuspended in phosphate-buffered saline (PBS, pH 7.2) and further purified by ultracentrifugation on discontinuous 20-60% sucrose step gradients. Fractions from the sucrose gradients were collected and analyzed by SDS-PAGE analysis, Western immunoblot analysis, and electron microscopy.
Influenza HA and M1 proteins of the expected molecular weights were detected in multiple sucrose density gradient fractions by Coomassie blue staining and Western immunoblot analysis (FIG. 6, Table 1). This suggested that influenza viral proteins from infected Sf-9S cells are aggregated in complexes of high-molecular weight, such as capsomers, subviral particles, VLP, and/or VLP complexes. The NA proteins, although inconsistently detected by Coomassie blue staining and Western immunoblot analysis, which was likely due to the inability of the rabbit anti-influenza serum to recognize denatured NA protein in the Western immunoblot assay, were consistently detected in neuraminidase enzyme activity assay (FIG. 10).










TABLE 1







Fraction#*
Titer









1
<1:5001  



3
<1:500   



5
1:500 



7
1:1000



9
1:2000



11 
1:2000



12 
1:4000



14 
1:500 



16 
<1:500   



PBS**
<1:500   



A/Shangdong/9/93
<1:1000  







*Fraction from 20–60% sucrose gradient



**Negative Control



***Positive Control
























RT-PCR

SEQ ID


Virus
Strain
Gene
Primer

NO







Type A
(H3N2)
Hemagglutinin
Forward
5′-A GGATCCATG AAGACTATCATTGCTTTGAG-3′
13



Sydney/5/97
(HA)





 





Reverse
5′-A GGTACC TCAAATGCAAATGTTGCACCTAATG-3′
14


 




Neuraminidase
Forward
5′-GGGGACAAGTTTGTACAAAAAAGCAGGCTTAGAAG
15




(NA)

GAGATAGAACC ATG AATCCAAATCAAAAGATAATAAC-3′



 





Reverse
5′-GGGGACCACTTTGTACAAGAAAGCTGGGTCCTATAT
16






AGGCATGAGATTGATGTCCGC-3′



 




Matrix (M1)
Forward
5′-AAA GAATTC ATG AGTCTTCTAACCGAGGTCGAAACGTA-3′
17


 





Reverse
5′-AAA TTCGAA TTACTCCAGCTCTATGCTGACAAAATGAC-3′
18


 




M2
Forward
5′-A GAATC ATG AGTCTTCTAACCGAGGTCGAAACGCCT
19






ATCAGAAACGAATGGGGGTGC-3′



 





Reverse
5′-AAA TTCGAA TTACTCCAGCTCTATGCTGACAAAATGAC-3′
20


 




Nucleoprotein
Forward
5′-A GAATTC ATG GCGTCCCAAGGCACCAAACG-3′
21




(NP)





 





Reverse
5′-A
22






GCGGCCGCTTAATTGTCGTACTCCTCTGCATTGTCTCCGAA







GAAATAAG-3′



 


Type B
Harbin
Hemagglutinin
Forward
5′-A GAATTC ATG AAGGCAATAATTGTACTACTCATGG-3′
23




(HA)





 





Reverse
5′-A GCGGCCGCTTATAGACAGATGGAGCAAGAAACATTGTC
24






TCTGGAGA-3′



 




Neuraminidase
Forward
5′-A GAATT CATG CTACCTTCAACTATACAAACG-3′
25




(NA)





 





Reverse
5′-A
26






GCGGCCGCTTACAGAGCCATATCAACACCTGTGACAGTG-3′









The presence of high-molecular VLPs was confirmed by gel filtration chromatography. An aliquot from sucrose density gradient fractions containing influenza viral proteins was loaded onto a Sepharose CL-4B column for fractionation based on mass. The column was calibrated with dextran blue 2000, dextran yellow, and vitamin B12 (Amersham Pharmacia) with apparent molecular weights of 2,000,000; 20,000; and 1,357 daltons, respectively, and the void volume of the column was determined. As expected, high-molecular influenza viral proteins migrated in the void volume of the column, which was characteristic of macromolecular proteins, such as virus particles. Fractions were analyzed by Western immunoblot analysis to detect influenza and baculovirus proteins. For example, M1 proteins were detected in the void volume fractions, which also contained baculovirus proteins (FIG. 7).
The morphology of influenza VLPs and proteins in sucrose gradient fractions was elucidated by electron microscopy. For negative-staining electron microscopy, influenza proteins from two sucrose density gradient fractions were fixed with 2% glutaraldehyde in PBS, pH 7.2. Electron microscopic examination of negatively-stained samples revealed the presence of macromolecular protein complexes or VLPs in both fractions. These VLPs displayed different sizes including diameters of approximately 60 and 80 nm and morphologies (spheres). Larger complexes of both types of particles were also detected, as well as rod-shaped particles (FIG. 8). All observed macromolecular structures had spikes (peplomers) on their surfaces, which is characteristic of influenza viruses. Since the size and appearance of 80 nm particles was similar to particles of wild type influenza virus, these structures likely represented VLPs, which have distinct similarities to wild type influenza virions, including similar particle geometry, architecture, triangulation number, symmetry, and other characteristics. The smaller particles of approximately 60 nm may represent subviral particles that differ from VLPs both morphologically and structurally. Similar phenomenon of recombinant macromolecular proteins of different sizes and morphologies was also reported for other viruses. For example, recombinant core antigen (HBcAg) of hepatitis B virus forms particles of different sizes, which have different architecture and triangulation number T=4 and T=3, respectively (Crowther et al., 1994).
To characterize the functional properties of the purified influenza A/Hong Kong/1073/99 (H9N2) VLPs, samples were tested in a hemagglutination assay (FIG. 9) and a neuraminidase enzyme assay (FIG. 10). For the hemagglutination assay, 2-fold dilutions of purified influenza VLPs were mixed with 0.6% guinea pig red blood cells and incubated at 4° C. for 1 hr or 16 hr. The extent of hemagglutination was inspected visually and the highest dilution of recombinant influenza proteins capable of agglutinating red blood cells was determined and recorded (FIG. 9). Again, many fractions from the sucrose density gradient exhibited hemagglutination activity, suggesting that multiple macromolecular and monomeric forms of influenza proteins were present. The highest titer detected was 1:4000. In a control experiment, wild-type influenza A/Shangdong virus demonstrated a titer of 1:2000. The hemagglutination assay revealed that the recombinant VLPs consisting of influenza A/Hong Kong/1073/99 (H9N2) virus HA, NA, and M1 proteins were functionally active. This suggested that the assembly, conformation, and folding of the HA subunit proteins within the VLPs were similar or identical to that of the wild type influenza virus.
Additionally, a neuraminidase enzyme assay was performed on samples of purified H9N2 VLPs. The amount of neuraminidase activity in sucrose density gradient fractions was determined using fetuin as a substrate. In the neuraminidase assay, the neuraminidase cleaved sialic acid from substrate molecules to release sialic acid for measurement. Arsenite reagent was added to stop enzyme activity. The amount of sialic acid liberated was determined chemically with thiobarbituric acid that produces a pink color that was proportional to the amount of free sialic acid. The amount of color (chromophor) was measured spectrophotometrically at wavelength 549 nm. Using this method, neuraminidase activity was demonstrated in sucrose gradient fractions containing influenza VLPs (FIG. 10). As expected, the activity was observed in several fractions, with two peak fractions. As a positive control, wild type influenza virus was used. The wild type influenza virus exhibited neuraminidase enzyme activity comparable to that of purified influenza VLPs. These findings corroborated the HA results with regard to protein conformation and suggested that purified VLPs of influenza A/Hong Kong/1073/99 (H9N2) virus were functionally similar to wild type influenza virus.
The results from the above analyses and assays indicated that expression of influenza A/Hong Kong/1073/99 (H9N2) HA, NA, and M1 proteins was sufficient for the self-assembly and transport of functional VLPs from baculovirus-infected insect cells. Since these influenza VLPs represented self-assembled influenza structural proteins and demonstrated functional and biochemical properties similar to those of wild type influenza virus, these influenza VLPs conserved important structural conformations including surface epitopes necessary for effective influenza vaccines.
Example 2
RT-PCR Cloning of Avian Influenza A/Hong Kong/1073/99 Viral Genes
It is an object of the present invention to provide synthetic nucleic acid sequences capable of directing production of recombinant influenza virus proteins. Such synthetic nucleic acid sequences were obtained by reverse transcription and polymerase chain reaction (PCR) methods using influenza virus natural genomic RNA isolated from the virus. For the purpose of this application, nucleic acid sequence refers to RNA, DNA, cDNA or any synthetic variant thereof which encodes the protein.
Avian influenza A/Hong Kong/1073/99 (H9N2) virus was provided by Dr. K. Subbarao (Centers for Disease Control, Atlanta, Ga., USA). Viral genomic RNA was isolated by the acid phenol RNA extraction method under Biosafety Level 3 (BSL3) containment conditions at CDC using Trizol LS reagent (Invitrogen, Carlsbad, Calif. USA). cDNA molecules of the viral RNAs were obtained by reverse transcription using MuLV reverse transcriptase (InVitrogen) and PCR using oligonucleotide primers specific for HA, NA, and M1 proteins and Taq I DNA polymerase (InVitrogen) (Table 1). The PCR fragments were cloned into the bacterial subcloning vector, pCR2.1TOPO (InVitrogen), between Eco RI sites that resulted in three recombinant plasmids, containing the HA, NA, and M1 cDNA clones.
Example 3
RT-PCR Cloning of Human Influenza A/Sydney/5/94 (H3N2) Viral Genes
Influenza A/Sydney/5/97 (H3N2) Virus was obtained from Dr. M. Massare (Novavax, Inc., Rockville, Md.). Viral genomic RNA was isolated by the RNA acid phenol extraction method under BSL2 containment conditions at Novavax, Inc. using Trizol LS reagent (Invitrogen). cDNA molecules of the viral RNAs were obtained by reverse transcription and PCR using oligonucleotide primers specific for HA, NA, M1, M2, and NP proteins (Table 1). The PCR fragments were cloned into the bacterial subcloning vector, pCR2.1TOPO, between Eco RI sites that resulted in five recombinant plasmids, containing the HA, NA, M1, M2, and NP cDNA clones.
Example 4
Cloning of Avian Influenza A/Hong Kong/1073/99 Viral cDNAs into Baculovirus Transfer Vectors
From the pCR2.1TOPO-based plasmids, the HA, NA, or M1 genes were subcloned into pFastBac1 baculovirus transfer vector (InVitrogen) within the polyhedron locus and Tn7 att sites and downstream of the baculovirus polyhedrin promoter and upstream of the polyadenylation signal sequence. The viral genes were ligated with T4 DNA ligase. For the HA gene, a Bam HI-Kpn I DNA fragment from pCR2.1TOPO-HA was inserted into BamHI-KpnI digested pFastBac1 plasmid DNA. For the NA gene, an EcoRI DNA fragment from pCR2.1TOPO-NA was inserted into EcoRI digested pFastBac1 plasmid DNA. For the M1 gene, an Eco RI DNA fragment from pCR2.1TOPO-M1 was inserted into Eco RI digested pFastBac1 plasmid DNA. Competent E. coli DH5α bacteria (InVitrogen) were transformed with these DNA ligation reactions, transformed colonies resulted, and bacterial clones isolated. The resulting pFastBac1-based plasmids, pFastBac1-HA, pFastBac1-NA, and pFastBac1-M1 were characterized by restriction enzyme mapping on agarose gels (FIG. 4A). The nucleotide sequences as shown on FIGS. 1-3 of the cloned genes were determined by automated DNA sequencing. DNA sequence analysis showed that the cloned influenza HA, NA, and M1 genes were identical to the nucleotide sequences for these genes as published previously [NA, HA, and M1 genes of influenza A/Hong Kong/1073/99 (H9N2) (GenBank accession numbers AJ404629, AJ404626, and AJ278646, respectively)].
Example 5
Cloning of Human Influenza A/Sydney/5/97 Viral cDNAs into Baculovirus Transfer Vectors
From the pCR2.1TOPO-based plasmids, the HA, NA, M1, M2, and NP genes were subcloned into pFastBac1 baculovirus transfer vector within the polyhedron locus and Tn7 att sites and downstream of the baculovirus polyhedrin promoter and upstream of the polyadenylation signal sequence. The viral genes were ligated with T4 DNA ligase. For the HA gene, a Bam HI-Kpn I DNA fragment from pCR2.1TOPO-hHA3 was inserted into BamHI-KpnI digested pFastBac1 plasmid DNA. For the NA gene, an Eco RI DNA fragment from pCR2.1TOPO-hNA was inserted into EcoRI digested pFastBac1 plasmid DNA. For the M1 gene, an Eco RI DNA fragment from pCR2.1TOPO-hM1 was inserted into EcoRI digested pFastBac1 plasmid DNA. For the M2 gene, an EcoRI DNA fragment from pCR2.1TOPO-hM2 was inserted into EcoRI digested pFastBac1 plasmid DNA. For the NP gene, an EcoRI DNA fragment from pCR2.1TOPO-hNP was inserted into EcoRI digested pFastBac1 plasmid DNA. Competent E. coli DH5α bacteria were transformed with these DNA ligation reactions, transformed colonies resulted, and bacterial clones isolated. The resulting pFastBac 1-based plasmids, pFastBac1-hHA3, pFastBac1-hNA2, pFastBac1-hM1, pFASTBAC1-hM2, and pFASTBAC1-hNP were characterized by restriction enzyme mapping on agarose gels. The nucleotide sequences of the cloned genes were determined by automated DNA sequencing. DNA sequence analysis showed that the cloned influenza HA, NA, M1, M2, and NP genes were identical to the nucleotide sequences for these genes as published previously.
Example 6
Construction of Multigenic Baculovirus Transfer Vectors Encoding Multiple Avian Influenza A/Hong Kong/1073/99 Viral Genes
In order to construct pFastBac1-based bacmid transfer vectors expressing multiple influenza A/Hong Kong/1073/99 (H9N2) virus genes, initially a Sna BI-Hpa I DNA fragment from pFastBac1-M1 plasmid containing the M1 gene was cloned into Hpa I site of pFastBac1-HA. This resulted in pFastBac1-HAM plasmid encoding both HA and M1 genes within independent expression cassettes and expressed under the control of separate polyhedrin promoters.
Finally, a SnaBI-AvrII DNA fragment from pFastBac1-HAM containing the HA and M1 expression cassettes, was transferred into Hpa I-Avr II digested pFastBac1-NA plasmid DNA. This resulted in the plasmid pFastBac1-NAHAM encoding three independent expression cassettes for expression of influenza HA, NA, and M1 genes and expressed under the control of separate polyhedrin promoters (FIG. 4B).
In another example, the H3 gene from pFASTBAC1-hHA3 (see Example 5) was cloned into pFASTBAC1-NAHAM as a fourth influenza viral gene for the expression and production of heterotypic influenza VLPs.
Example 7
Generation of Multigenic Recombinant Baculovirus Encoding NA, HA, and M1 Genes of Avian Influenza A/Hong Kong/1073/99 Virus in Insect Cells
The resulting multigenic bacmid transfer vector pFastBac1-NAHAM was used to generate a multigenic recombinant baculovirus encoding avian influenza A/Hong Kong/1073/99 (H9N2) HA, NA, and M1 genes for expression in insect cells. Recombinant bacmid DNAs were produced by site-specific recombination at polyhedrin and Tn7 att DNA sequences between pFastBac1-NAHAM DNA and the AcMNPC baculovirus genome harbored in competent E. coli DH10BAC cells (InVitrogen) (FIG. 4B). Recombinant bacmid DNA was isolated by the mini-prep plasmid DNA method and transfected into Sf-9s cells using the cationic lipid CELLFECTIN (InVitrogen). Following transfection, recombinant baculoviruses were isolated, plaque purified, and amplified in Sf-9S insect cells. Virus stocks were prepared in Sf-9S insect cells and characterized for expression of avian influenza viral HA, NA, and M1 gene products. The resulting recombinant baculovirus was designated bNAHAM-H9N2.
Example 8
Expression of Recombinant Avian Influenza A/Hong Kong/1073/99 Proteins in Insect Cells
Sf-9S insect cells maintained as suspension cultures in shaker flasks at 28° C. in serum-free medium (HyQ SFM, HyClone, Ogden, Utah) were infected at a cell density of 2×106 cells/ml with the recombinant baculovirus, bNAHAM-H9N2, at a multiplicity of infection (MOI) of 3 pfu/cell. The virus infection proceeded for 72 hrs. to allow expression of influenza proteins. Expression of avian influenza A/Hong Kong/1073/99 (H9N2) HA and M1 proteins in infected insect cells was confirmed by SDS-PAGE and Western immunoblot analyses. SDS-PAGE analysis was performed on 4-12% linear gradient NuPAGE gels (Invitrogen) under reduced and denaturing conditions. Primary antibodies in Western immunoblot analysis were polyclonal rabbit antiserum raised against avian influenza A/Hong Kong/1073/99 (H9N2) obtained from CDC and monoclonal murine antiserum to influenza M1 protein (Serotec, UK). Secondary antibodies for Western immunoblot analysis were alkaline phosphatase conjugated goat IgG antisera raised against rabbit or mouse IgG (H+L) (Kirkegaard and Perry Laboratories, Gaithersburg, Md., USA). Results of these analyses (FIG. 5) indicated that the HA and M1 proteins were expressed in the baculovirus-infected insect cells.
Example 9
Purification of Recombinant Avian Influenza H9N2 Virus-Like Particles and Macromolecular Protein Complexes
Culture supernatants (200 ml) from Sf-9S insect cells infected with the recombinant baculovirus bNAHAM-H9N2 that expressed avian influenza A/Hong Kong/1073/99 (H9N2) HA, NA, and M1 gene products were harvested by low speed centrifugation. Culture supernatants were clarified by centrifugation in a Sorval RC-5B superspeed centrifuge for 1 hr at 10,000×g and 4° C. using a GS-3 rotor. Virus and VLPs were isolated from clarified culture supernatants by centrifugation in a Sorval OTD-65 ultracentrifuge for 3 hr at 27,000 rpm and 4° C. using a Sorval TH-641 swinging bucket rotor. The virus pellet was resuspended in 1 ml of PBS (pH 7.2), loaded onto a 20-60% (w/v) discontinuous sucrose step gradient, and resolved by centrifugation in a Sorval OTD-65 ultracentrifuge for 16 hr at 27,000 rpm and 4° C. using a Sorval TH-641 rotor. Fractions (0.5 ml) were collected from the top of the sucrose gradient.
Influenza proteins in the sucrose gradient fractions were analyzed by SDS-PAGE and Western immunoblot analyses as described above in Example 6. The HA and M1 proteins were found in the same sucrose gradient fractions (FIG. 6) as shown by Western blot analysis and suggested that the HA and M1 proteins were associated as macromolecular protein complexes. Also the HA and M1 proteins were found in fractions throughout the sucrose gradient suggesting that these recombinant viral proteins were associated with macromolecular protein complexes of different densities and compositions.
Example 10
Analysis of Recombinant Avian Influenza H9N2 VLPs and Proteins by Gel Filtration Chromatography
Protein macromolecules such as VLPs and monomeric proteins migrate differently on gel filtration or size exclusion chromatographic columns based on their mass size and shape. To determine whether the recombinant influenza proteins from sucrose gradient fractions were monomeric proteins or macromolecular protein complexes such as VLPs, a chromatography column (7 mm×140 mm) with a resin bed volume of 14 ml of Sepharose CL-4B (Amersham) was prepared. The size exclusion column was equilibrated with PBS and calibrated with Dextran Blue 2000, Dextran Yellow, and Vitamin B12 (Amersham Pharmacia) with apparent molecular weights of 2,000,000; 20,000; and 1,357, respectively, to ascertain the column void volume. Dextran Blue 2000 eluted from the column in the void volume (6 ml fraction) also. As expected, the recombinant influenza protein complexes eluted from the column in the void volume (6 ml fraction). This result was characteristic of a high molecular weight macromolecular protein complex such as VLPs. Viral proteins in the column fractions were detected by Western immunoblot analysis as described above in Example 6. The M1 proteins were detected in the void volume fractions (FIG. 7). As expected baculovirus proteins were also in the void volume.
Example 11
Electron Microscopy of Recombinant Influenza VLPs
To determine whether the macromolecular protein complexes isolated on sucrose gradients and containing recombinant avian influenza proteins had morphologies similar to influenza virions, electron microscopic examination of negatively stained samples was performed. Recombinant avian influenza A/Hong Kong/1073/99 (H9N2) protein complexes were concentrated and purified from culture supernatants by ultracentrifugation on discontinuous sucrose gradients as described in Example 7. Aliquots of the sucrose gradient fractions were treated with a 2% glutaraldehyde in PBS, pH 7.2, absorbed onto fresh discharged plastic/carbon-coated grids, and washed with distilled water. The samples were stained with 2% sodium phosphotungstate, pH 6.5, and observed using a transmission electron microscope (Philips). Electron micrographs of negatively-stained samples of recombinant avian influenza H9N2 protein complexes from two sucrose gradient fractions showed spherical and rod-shaped particles (FIG. 8) from two sucrose gradient fractions. The particles had different sizes (60 and 80 nm) and morphologies. Larger complexes of both types of particles were also detected, as well as rod-shaped particles (FIG. 8). All observed protein complex structures exhibited spike like surface projections resembling influenza virus HA and NA peplomers. Since the size and appearance-of the 80 nm particles was similar to that of wild type influenza virus particles, these structures likely represented enveloped influenza VLPs. The smaller particles of approximately 60 nm probably represented subviral particles that differed from the above VLPs both morphologically and structurally.
Example 12
Analysis of Functional Characteristics of Influenza Proteins by Hemagglutination Assay
To determine whether the purified influenza VLPs and proteins possessed functional activities, such as hemagglutination and neuraminidase activity, which were characteristic for influenza virus, the purified influenza VLPs and proteins were tested in hemagglutination and neuraminidase assays.
For the hemagglutination assay, a series of 2-fold dilutions of sucrose gradient fractions containing influenza VLPs or positive control wild type influenza virus type A were prepared. Then they were mixed with 0.6% guinea pig red blood cells in PBS (pH 7.2) and incubated at 4° C. for 1 to 16 hr. As a negative control, PBS was used. The extent of hemagglutination was determined visually, and the highest dilution of fraction capable of agglutinating guinea pig red blood cells was determined (FIG. 9). The highest hemagglutination titer observed for the purified influenza VLPs and proteins was 1:4000, which was higher than the titer shown by the wild type influenza control, which was 1:2000.
Example 13
Analysis of Functional Characteristics of Influenza Proteins by Neuraminidase Assay
The amount of neuraminidase activity in influenza VLP-containing sucrose gradient fractions was determined by the neuraminidase assay. In this assay the NA (an enzyme) acted on the substrate (fetuin) and released sialic acid. Arsenite reagent was added to stop enzyme activity. The amount of sialic acid liberated was determined chemically with the thiobarbituric acid that produced a pink color in proportion to free sialic acid. The amount of color (chromophor) was measured in a spectrophotometer at wavelength 594 nm. The data, as depicted in FIG. 8, showed that a significant amount of sialic acid was produced by VLP-containing fractions of the sucrose gradients and that these fractions corresponded to those fractions exhibiting hemagglutination activity.
Example 14
Immunization of BALB/c Mice with Functional Homotypic Recombinant Influenza H9N2 VLPs
The immunogenicity of the recombinant influenza VLPs was ascertained by immunization of mice followed by Western blot analysis of immune sera. Recombinant VLPs (1 μg/injection) comprised of viral HA, NA, and M1 proteins from avian influenza virus type A/Honk Kong/1073/99 and purified on sucrose gradients were inoculated subcutaneously into the deltoid region of ten (10) female BALB/c mice at day 0 and day 28 (FIG. 11). PBS (pH 7.2) was administered similarly as a negative control into five (5) mice. The mice were bled from the supraorbital cavity at day-1 (pre-bleed), day 27 (primary bleed), and day 54 (secondary bleed). Sera were collected from blood samples following overnight clotting and centrifugation.
For Western blot analysis, 200 ng of inactivated avian influenza virus type A H9N2 or cold-adapted avian influenza virus type A H9N2, as well as See Blue Plus 2 pre-stained protein standards (InVitrogen), was denatured (95° C., 5 minutes) and subjected to electrophoresis under reduced conditions (10 mM β-mercaptoethanol) on 4-12% polyacrylamide gradient NuPAGE gels (InVitrogen) in MES buffer at 172 volts until the bromophenol blue tracking dye disappeared. For protein gels, the electrophoreses proteins were visualized by staining with Colloidal Coomassie Blue reagent (InVitrogen). Proteins were transferred from the gel to nitrocellulose membranes in methanol by the standard Western blot procedure. Sera from VLP-immunized mice and rabbits immunized with inactivated avian influenza virus H9N2 (positive control sera) were diluted 1:25 and 1:100, respectively, in PBS solution (pH 7.2) and used as primary antibody. Protein bound membranes, which were blocked with 5% casein, were reacted with primary antisera for 60 minutes at room temperature with constant shaking. Following washing of primary antibody membranes with phosphate buffered saline solution containing Tween 20, secondary antisera [goat anti-murine IgG—alkaline phosphatase conjugate (1:10,000) or goat anti-rabbit IgG—alkaline phosphatase conjugate (1:10,000)] were reacted 60 minutes with the membrane. Following washing of secondary antibody membranes with phosphate buffered saline solution containing Tween 20, antibody-binding proteins on the membranes were visualized by development with the chromogenic substrate such as NBT/BCIP (InVitrogen).
The results of Western blot analysis (FIG. 12) were that proteins with molecular weights similar to viral HA and M1 proteins (75 and 30 kd, respectively) bound to positive control sera (FIG. 12B) and sera from mice immunized with the recombinant influenza H9N2 VLPs (FIG. 12A). These results indicated that the recombinant influenza H9N2 VLPs alone were immunogenic in mice by this route of administration.
Example 15
Kong/1073/99 (H9N2) VLP Immunogenicity and Challenge Study in BALB/c Mice
BALB/C mice were immunized with H9N2 VLPs (1 μg HA or 10 μg HA/dose), with or without 100 μg Novasome adjuvant, on day 0 and day 21 and challenged with homologous infectious virus IN on day 57. Mice were bled on days 0, 27 and 57 with the serum assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) using turkey RBCs, and influenza by ELISA. Results of this study are shown in FIG. 13 through FIG. 16.
High titers of H9N2 antibodies were induced after a single immunization (primary) with H9N2 VLP vaccine without or with Novasomes and a dose of 10 μg VLPs containing 1 μg HA (FIG. 13). Specific antibody titers were increased about half to one log following a booster immunization.
After immunization and a boost with 1 μg of HA in the form of H9N2 VLPs the serum HI levels were at or above the level generally considered protective (log2=5) in all animals (FIG. 14, lower left panel). H9N2 VLPs formulated with Novasome adjuvant increased HI responses about 2 fold following primary immunization and about 4 fold after the booster (FIG. 14, lower right panel). Purified subunit H9N2 hemagglutinin also induced protective levels of HI antibodies after boosting and Novasomes again increased HI antibody responses by about 2 fold after the primary and 4 fold after the booster immunizations (FIG. 14, upper panels). The level of HI antibody induced with 10 μg of HA given as a subunit vaccine was equivalent to 1 μg of HA presented in the form of a VLP.
In addition, weight loss was significantly less in the mice immunized with H9N2 VLPs or with VLPs plus adjuvant compared to unvaccinated control animals (FIG. 15). There was no statistical difference in weight loss in the groups immunized with H9N2 VLPs and H9N2 VLPs plus Novasome adjuvant.
Likewise, lung virus titers at 3 and 5 days post challenge with H9N2 virus were significantly reduced in mice immunized with H9N2 VLPs (FIG. 16). At day 3 when the influenza virus titers peak in the lung tissues, mice immunized with H9N2 VLPs plus Novasomes® had a significantly greater reduction in virus titer compared to mice immunized with VLPs alone and the unvaccinated control mice.
Example 16
A/Fujian/411/2002 (H3N2) VLP Immunogenicity and Cross Reactivity between Several Influenza Strains
BALB/c mice were immunized with A/Fujian/411/2002 VLPs (3.0, 0.6, 0.12 and 0.24 μg HA/dose), twice IM and IN. Mice were bled on days 0 and 35. The serum was then assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) using turkey RBCs, and for anti-influenza antibodies by ELISA. Results of this study are shown on FIGS. 17A, 17B and 17C. These results indicate that an immune response was mounted both IM and IN against HA and NA.
Example 17
Determination of the IgG Isotypes in Mouse after Inoculation with H3N2 VLPs
Mice were inoculated with VLPs intramuscularly and intranasal. At week 5 sera was collected and assayed to distinguish between IgG isotypes.
Sera was tested on plates coated with purified HA (Protein Sciences) A/Wyoming/3/2003 using an ELISA assay. Serial five-fold dilutions of sera was added to the wells and the plates were incubated. Next, the biotinylated goat anti-mouse Ig, or anti-mouse IgG1, anti-mouse IgG2a, anti-mouse IgG2b and anti-mouse IgG3. Then, streptavidine-peroxidase was added to the wells. Bound conjugates were detected. Results are illustrated on FIGS. 18A and B. These results illustrate that IgG2a are the most abundant isotype in an immune response against VLPs in mouse.
Example 18
A/Hong Kong/1073/99 (H9N2) VLP Dose-Ranging Study in SD Rats
SD rats (n=6 per dose) were immunized on day 0 and day 21 with purified A/Hong Kong/1073/99 (H9N2) VLPs diluted with PBS at neutral pH to 0.12, 0.6, 3.0, and 15.0 μg HA or with PBS alone. Blood samples were taken from the animals on day 0, day 21, day 35 and day 49 and the serum assayed for hemagglutination inhibition assay (HI) to detect functional antibodies able to inhibit the binding function of the HA. The dosage was based on HA content as measured using SDS-PAGE and scanning densitometry of purified H9N2 VLPs. Hemagglutinin inhibition assay titer results are depicted in FIG. 19. A single 0.6 μg HA dose of H9N2 VLPs or two doses of 0.12 μg HA produced protective levels of HI antibodies in rats. These data indicate that a lower amount of HA can induce a protective response when said HA is part of a VLP.
Example 19
Kong/1073/99 (H9N2) VLP Immunogenicity
BALB/C mice were immunized with H9N2 VLPs (0.12, 0.6 μg HA/dose), with or without 100 μg Novasome and Alum adjuvant, on day 0 and day 21 and challenged with homologous infectious virus IN on day 57. Mice were also immunized with 3.0 and 15.0 μg HA/dose (no adjuvant). Mice were bled on days 0, 21, 35 and 49 with the serum assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) using turkey RBCs, and influenza by ELISA. Results of this study are shown in FIGS. 20 A and B.
The results indicate that a more robust overall immune response was observed when the VLPs were administered with an adjuvant. However, a protective response was elicited with 0.12 μg HA/dose at week 3 when compared to the VLPs formulation with Alum and VLPs with no adjuvant. Also in week 7, the VLPs comprising Novasomes had about 2 log increase in HI titer as compared to the VLP with Alum. The robustness of the response was similar to VLPs administered at 3.0 and 15.0 μg HA/dose without an adjuvant. These results indicate that Novasomes elicit a more robust response as compared to Alum. In addition, a protective immune response can be achieved with 25× less VLPs when said VLPs are administered in a formulation comprising Novasomes.
Also, in the 0.6 μg HA/dose data, the Novasome formulation had an about 1.5 log greater response than compared to Alum. The immune responses were similar in magnitude to VLPs administered in 3.0 and 15.0 μg HA/dose without adjuvant. These results indicate that with an adjuvant, approximately 5× less VLPs are needed to be administered to achieve a protective response.
Also, FIG. 20B depicts the HI titer of H9N2 VLPs using different formulations of Novasomes. The following are the formulas used in the experiment:

    Group 1: H9N2 VLP (0.1 μg) (n=5)
    Group 2: H9N2 VLP (0.1 μg) w/DCW neat) (n=5)
    Group 3: H9N2 VLP (0.1 μg) w/DCW 1:3) (n=5)
    Group 4: H9N2 VLP (0.1 μg) w/DCW 1:9) (n=5)
    Group 5: H9N2 VLP (0.1 μg) w/DCW 1:27) (n=5)
    Group 6: H9N2 VLP (0.1 μg) w/NVAX 1) (n=5)
    Group 7: H9N2 VLP (0.1 μg) w/NVAX 2) (n=5)
    Group 8: H9N2 VLP (0.1 μg) w/NVAX 3) (n=5)
    Group 9: H9N2 VLP (0.1 μg) w/NVAX 4) (n=5)
    Group 10: H9N2 VLP (0.1 μg) w/NVAX 5) (n=5)
    Group 11: H9N2 VLP (0.1 μg) w/Alum-OH) (n=5)
    Group 12: H9N2 VLP (0.1 μg) w/CpG) (n=5)
    Group 13: PBS (0.6 μg) (n=5)
    Group 14: H3 VLPs (0.6 μg) (n=5)
    Group 15: H5 VLPs (0.6 μg) (n=8)
    
        H9: (Lot#11005)
        DCW: Novasomes (Lot#121505-2, Polyoxyethylene-2-cetyl ether, Cholesterol, Superfined soybean oil, and Cetylpridinium chloride)
        NVAX 1: B35P83, MF-59 replica (Squalene, Polysorbate, and Span)
        NVAX 2: B35P87 (Soybean Oil, Brij, Cholesterol, Pluronic F-68)
        NVAX 3: B35P88 (Soybean Oil, Brij, Cholesterol, Pluronic F-68, and Polyethyleneimine)
        NVAX 4: B31P60 (Squalene, Brij, Cholesterol, Oleic acid)
        NVAX 5: B3 1P63 (Soybean oil, Glyceryl monostearate, Cholesterol, Polysorbate)
        CpG: (Lot#1026004)
        H5: (Lot#22406)
    
    


FIG. 21 depicts and H9N2 VLP dose response curve. This data indicates that a dose of VLPs at 0.6 μg HA/dose is the minimum to elicit a protective immune response in mice after 3 weeks.
Example 20
Materials and Methods for Ferret Studies
Ferrets were purchased from Triple F Farms (FFF, Sayre, Pa.). All ferrets purchased has an HAI titer of less that 10 hemagglutination units. Approximately two days prior to vaccination, animals were implanted with a temperature transponder (BioMedic Data Systems, Inc.). Animal (6 animals/group) were vaccinated on day 0 either with (1) PBS (negative control, group one), (2) H3N2 influenza VLPs @ 15 μg of H3 (group 2), (3) H3N2 influenza VLPs @ 3 μg of H3 (group 2), (4) H3N2 influenza VLPs @ 0.6 μg of H3 (group 3), (5) H3N2 influenza VLPs @ 0.12 μg of H3 (group 5), or (6) rH3HA @ 15 μg (group 6). On day 21 animals were boosted with vaccine. Animals were bled on days 0 (prior to vaccination), day 21 (prior to vaccine boost), and day 42. Animals were assessed for clinical signs of adverse vaccine effects once weekly throughout the study period. Similar studies were performed with other influenza VLPs.
HAI Levels in Ferret Sera
Ferret sera were obtained from FFF, treated with Receptor Destroying Enzyme (RDE) and tested in a hemagglutination inhibition (HAI) assay by standard procedures (Kendal et al. (1982)). All ferrets that were chosen for the study tested negative (HAI=10) for pre-existing antibodies to currently circulating human influenza virus (A/New Caledonia/20/99 (H1N1), A panama/2007/99 (H3N2), A/Wellington/01/04 (H2N3) and B/Sichuan/379/99 and H5N1).
Ferrets
Approximately 8 month-old, influenza naive, castrated and descented, male Fitch ferrets (Mustela putoriusfuro) were purchased form FFF. Animals were housed in stainless steel rabbit cages (Shor-line, KS) containing Sani-chips Laboratory Animal Bedding (P.J. Murphy Forest Products, N.J.). Ferrets were provided with Teklad Global Ferret Diet (Harlan Teklad, WI) and fresh water ad libitum. Pans were changed three times each week, and cages were cleaned biweekly.
Vaccinations and Blood Collection of Ferrets
The vaccine, H3N2 influenza VLPs or H9N2 influenza VLPs and controls, for example, rH3NA (A/Wyoming/3/2003) and PBS (negative control) were stored at 4° C. prior to use. For most studies, six groups of ferrets (N-6/group) were vaccinated intramuscularly with either concentration of vaccine or control in a volume of 0.5 ml.
Prior to blood collection and vaccination, animals were anesthetized by intramuscular injection into the inner thigh with a solution of Katamine (25 mg/kg, Atropine (0.05 mg/kg) and Xylazine (2.0 mg/kg) “KAX.” Once under anesthesia, ferrets were positioned in dorsal recumbency and blood was collected (volume between 0.5 and 1.0 ml) from the anterior vena cava using a 23 gauge 1′′ needle connected to a 1 cc tuberculin syringe. Blood was transferred to a tube containing a serum separator and clot activator and allowed to clot at room temperature. Tubes were centrifuged and sera was removed and frozen at −80° C. Blood was collected prior to vaccination (day 0), prior to boost (day 21) and day 42 and tested by HAI assay.
Monitoring of Ferrets
Temperatures were measured weekly at approximately the same time throughout the study period. Pre-vaccination values were averaged to obtain a baseline temperature for each ferret. The change in temperature (in degrees Fahrenheit) was calculated at each time point for each animal. Ferrets were examined weekly for clinical signs of adverse vaccine effects, including temperature, weight loss, loss of activity, nasal discharge, sneezing and diarrhea. A scoring system bases on that described by Reuman et al. (1989) was used to assess activity level where 0=alert and playful; 1=alert but playful only when stimulated; 2=alert by not playful when stimulated; 3=neither alert not playful when stimulated. Based on the scores for each animal in a group, a relative inactivity index was calculated as Σ(day 0-Day 42)[activity score+1]/Σ(day 0-Day 42), where n equals the total number of observations. A value of 1 was added to each base score so that a score of “0” could be divided by a denominator, resulting in an index value of 1.0.
Serum Preparations
Sera generally have low levels of non-specific inhibitors on hemagglutination. To inactivate these non-specific inhibitors, sera were treated with (RDE) prior to being tested. Briefly, three part RDE was added to one part sera and incubated overnight at 37° C. RDE was inactivated by incubation at 56° C. for approximately 30 minutes. Following inactivation of RDE, PBS was added to the sample for a final serum dilution of 1:10 (RDE-Tx). The diluted RDE-Tx sera was stored at 4° C. prior to testing (for 7 days) or stored at −20° C.
Preparation Turkey Erythrocytes:
Human influenza viruses bind to sialic acid receptors containing N-acetylneuraminic acid α 2,6-galactose linkages. Avian influenza viruses bind to sialic acid receptors containing N-acetylneuraminic acid α 2,3 galactose (α 2,3 linkages) and express both α 2,3 and α 2,6 linkages. Turkey erythocytes (TRBC) are used for the HAI assay since A/Fujian is a human influenza virus. The TRBCs adjusted with PBS to achieve a 0.5% vol/vol suspension. The cells are kept at 4° C. and used within 72 hours of preparation.
HAI Assay
The HAI assay was adapted from the CDC laboratory-based influenza surveillance manual (Kendal et al. (1982) Concepts and procedures for laboratory based influenza surveillance, U.S. Department of Health and Human Services, Public Health Service, Centers for Disease Control, Atlanta, Ga., herein incorporated by reference in its entirety for all purposes). RDE-Tx sera was serially two-fold diluted in v-bottom microtiter plates. An equal volume of virus adjusted, adjusted to approximately 8 HAU/50 ul was added to each well. The plates were covered and incubated at room temperature for 15 minutes followed by the addition of 0.5% TRBC. The plates were mixed by agitation, covered, and the TRBC were allowed to settle for 30 minutes at room temperature. The HAI titer was determined by the reciprocal dilution of the last row which contained non-agglutinated TRBC. Positive and negative serum controls were included for each plate.
Example 21
A/Hong Kong/1073/99 (H9N2) VLP Dose-Ranging Study in Ferrets
Ferrets, serologically negative by hemagglutination inhibition for influenza viruses, were used to assess the antibody and HI titer after an inoculation with H9N2 VLPs. Ferrets were bled on days 0, and 21 days with the serum assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) using turkey RBCs, and for anti-influenza antibodies by ELISA. Results are illustrated in FIG. 22. These results show HI titers corresponding to protective antibody levels at VLP doses of 1.5 and 15 μg.
Example 21
Vaccination of H3N2 VLPs in Ferrets
Ferrets were vaccinated at day 0, and given a boost on day 21 with different strains of H3N2 VLPs at different dosages (HA dosages of 0.12, 0.6, 3.0, 15.0 μg). The positive control was rH3HA at 15 μg and PBS alone is the negative control. Sera, as described above, were taken from the ferrets on day 0 prior to vaccination, day 21 (prior to boost) and day 42. An HI assay was conducted on the serum samples to determine if there was an immune response against the VLPs. These data are illustration on FIG. 23. These data indicate that H3N2 VLPs, when introduced into ferrets, do induce an immune response. Thus, the H3N2 VLPs are immunogenic in ferrets.
Example 22
RT-PCR and Cloning of HA, NA, and M1 Genes of Influenza A/Indonesia/5/05 (H5N1) Virus
Clade 2 influenza virus, strain A/Indonesia/5/05 (H5N1) viral RNA was extracted using Trizol LS (Invitrogen, Carlsbad, Calif.) under BSL-3 containment conditions. Reverse transcription (RT) and PCR were performed on extracted viral RNA using the One-Step RT-PCR system (Invitrogen) with gene-specific oligonucleotide primers. The following primer pairs were used for the synthesis of the H5N1 hemagglutinin (HA), neuraminidase (NA), and matrix (M1) genes, respectively:








5′-AACGGTCCGATGGAGAAAATAGTGCTTCTTC-3′
(SEQ ID. 4)


and



 


5′-AAAGCTTTTAAATGCAAATTCTGCATTGTAACG-3′
(SEQ ID. 5)



(HA);


 


5′-AACGGTCCGATGAATCCAAATCAGAAGATAAT-3′
(SEQ ID. 6)


and



 


5′-AAAGCTTCTACTTGTCAATGGTGAATGGCAAC-3′
(SEQ ID. 7)



(NA);


and



 


5′-AACGGTCCGATGAGTCTTCTAACCGAGGTC-3′
(SEQ ID. 8)


and



 


5′-AAAGCTTTCACTTGAATCGCTGCATCTGCAC-3′
(SEQ ID. 9)



(M1)


(ATG codons are underlined).







Following RT-PCR, cDNA fragments containing influenza HA, NA, and M1 genes with molecular weights of 1.7, 1.4, and 0.7 kB, respectively, were cloned into the pCR2.1-TOPO vector (Invitrogen). The nucleotide sequences of the HA, NA, and M1 genes were determined by DNA sequencing. A similar strategy was followed for cloning a lade 1 H5N1 influenza virus from Vietnam/1203/2003.
Example 23
Generation of Recombinant Baculoviruses Comprising H5N1
The HA gene was cloned as a RsrII-HindIII DNA fragment (1.7 kb) downstream of the AcMNPV polyhedrin promoter within pFastBac1 bacmid transfer vector (Invitrogen) digested with RsrII and HindIII. Similarly, the NA and M1 genes were cloned as EcoRI-HindIII DNA fragments (1.4 and 0.8 kb, respectively) into EcoRI-HindIII-digested pFastBac1 plasmid DNA. The three resulting baculovirus transfer plasmids pHA, pNA, and pM1 containing influenza A/Indonesia/5/05 (H5N1)virus HA, NA, and M1 genes, respectively, were used to generate recombinant bacmids.
Bacmids were produced by site-specific homologous recombination following transformation of bacmid transfer plasmids containing influenza genes into E. coli DH10Bac competent cells, which contained the AcMNPV baculovirus genome (Invitrogen). The recombinant bacmid DNA was transfected into the Sf9 insect cells.
Nucleotide sequences of the Indonesia/5/05 HA, NA, and M1 genes.








HA (SEQ ID. 10)



ATGGAGAAAATAGTGCTTCTTCTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGC


 


ATTGGTTACCATGCAAACAATTCAACAGAGCAGGTTGACACAATCATGGAAAAGAACGTT


 


ACTGTTACACATGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTA


 


GATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTCCTCGGGAAC


 


CCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTACATAGTGGAGAAGGCCAAT


 


CCAACCAATGACCTCTGTTACCCAGGGAGTTTCAACGACTATGAAGAACTGAAACACCTA


 


TTGAGCAGAATAAACCATTTTGAGAAAATTCAAATCATCCCCAAAAGTTCTTGGTCCGAT


 


CATGAAGCCTCATCAGGAGTGAGCTCAGCATGTCCATACCTGGGAAGTCCCTCCTTTTTT


 


AGAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAGAAAAGCTAC


 


AATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGAATTCACCATCCTAATGATGCG


 


GCAGAGCAGACAAGGCTATATCAAAACCCAACCACCTATATTTCCATTGGGACATCAACA


 


CTAAACCAGAGATTGGTACCAAAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGA


 


AGGATGGAGTTCTTCTGGACAATTTTAAAACCTAATGATGCAATCAACTTCGAGAGTAAT


 


GGAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGACTCAGCAATT


 


ATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCG


 


ATAAACTCTAGTATGCCATTCCACAACATACACCCTCTCACCATCGGGGAATGCCCCAAA


 


TATGTGAAATCAAACAGATTAGTCCTTGCAACAGGGCTCAGAAATAGCCCTCAAAGAGAG


 


AGCAGAAGAAAAAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGG


 


CAGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGGAGTGGGTAC


 


GCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCA


 


ATCATTGACAAAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAATAACTTAGAA


 


AGGAGAATAGAGAATTTAAACAAGAAGATGGAAGAGGGGTTTCTAGATGTCTGGACTTAT


 


AATGCCGAACTTCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAAT


 


GTTAAGAACCTCTACGACAAGGTCCGACTAGAGCTTAGGGATAATGCAAAGGAGCTGGGT


 


AACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATGTATGGAAAGTATAAGAAAC


 


GGAACGTACAACTATCCGCAGTATTCAGAAGAAGCAAGATTAAAAAGAGAGGAAATAAGT


 


GGGGTAAAATTGGAATCAATAGGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCG


 


AGTTCCCTAGCACTGGCAATCATGATGGCTGGTCTATCTTTATGGATGTGCTCCAATGGA


 


TCGTTACAATGCAGAATTTGCATTTAA














NA (SEQ ID. 11)



ATGAATCCAAATCAGAAGATAATAACCATTGGATCAATCTGTATGGTAATTGGAATAGTT


 


AGCTTAATGTTACAAATTGGGAACATGATCTCAATATGGGTCAGTCATTCAATTCAGACA


 


GGGAATCAACACCAAGCTGAATCAATCAGCAATACTAACCCTCTTACTGAGAAAGCTGTG


 


GCTTCAGTAACATTAGCGGGCAATTCATCTCTTTGCCCCATTAGAGGATGGGCTGTACAC


 


AGTAAGGACAACAATATAAGGATCGGTTCCAAGGGGGATGTGTTTGTTATTAGAGAGCCG


 


TTCATCTCATGCTCCCACCTGGAATGCAGAACTTTCTTCTTGACTCAGGGAGCCTTGCTG


 


AATGACAAGCACTCCAACGGGACTGTCAAAGACAGAAGCCCTCACAGAACATTAATGAGT


 


TGTCCTGTGGGTGAGGCTCCCTCTCCATATAACTCAAGGTTTGAGTCTGTTGCTTGGTCA


 


GCAAGTGCTTGCCATGATGGCACCAGTTGGTTGACAATTGGAATTTCTGGCCCAGACAAT


 


GAGGCTGTGGCTGTATTGAAATACAATGGCATAATAACAGACACTATCAAGAGTTGGAGG


 


AACAACATACTGAGAACTCAAGAGTCTGAATGTGCATGTGTAAATGGCTCTTGCTTTACT


 


GTAATGACTGATGGACCAAGTGATGGGCAGGCATCATATAAGATCTTCAAAATGGAAAAA


 


GGAAAAGTGGTCAAATCAGTCGAATTGGATGCTCCTAATTATCACTATGAGGAATGCTCC


 


TGTTATCCTGATGCCGGCGAAATCACATGTGTTTGCAGGGATAATTGGCATGGCTCAAAT


 


AGGCCATGGGTATCTTTCAATCAAAATTTGGAGTATCAAATAGGATATATATGCAGTGGA


 


GTTTTCGGAGACAATCCACGCCCCAATGATGGAACAGGTAGTTGTGGCCCGATGTCCCCT


 


AACGGGGCATATGGGGTAAAAGGGTTTTCATTTAAATACGGCAATGGTGTTTGGATCGGG


 


AGAACCAAAAGCACTAATTCCAGGAGCGGCTTTGAAATGATTTGGGATCCAAATGGGTGG


 


ACTGGAACGGACAGTAGCTTTTCAGTGAAACAAGATATAGTAGCAATAACTGATTGGTCA


 


GGATATAGCGGGAGTTTTGTCCAGCATCCAGAACTGACAGGATTAGATTGCATAAGACCT


 


TGTTTCTGGGTTGAGTTAATCAGAGGGCGGCCCAAAGAGAGCACAATTTGGACTAGTGGG


 


AGCAGCATATCTTTTTGTGGTGTAAATAGTGACACTGTGAGTTGGTCTTGGCCAGACGGT


 


GCTGAGTTGCCATTCACCATTGACAAGTAG














M1 (SEQ ID. 12)



ATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCCCCTC


 


AAAGCCGAGATCGCGCAGAAACTTGAAGATGTCTTTGCAGGAAAGAACACCGATCTCGAG


 


GCTCTCATGGAGTGGCTGAAGACAAGACCAATCCTGTCACCTCTGACTAAAGGGATTTTG


 


GGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGAGGACTGCAGCGTAGACGCTTTGTC


 


CAGAATGCCCTAAATGGAAATGGAGATCCAAATAATATGGATAGGGCAGTTAAGCTATAT


 


AAGAAGCTGAAAAGAGAAATAACATTCCATGGGGCTAAAGAGGTTTCACTCAGCTACTCA


 


ACCGGTGCACTTGCCAGTTGCATGGGTCTCATATACAACAGGATGGGAACGGTGACTACG


 


GAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGAGCAGATTGCAGATTCACAGCATCGG


 


TCTCACAGGCAGATGGCAACTATCACCAACCCACTAATCAGGCATGAAAACAGAATGGTG


 


CTGGCCAGCACTACAGCTAAGGCTATGGAGCAGATGGCGGGATCAAGTGAGCAGGCAGCG


 


GAAGCCATGGAGGTCGCTAATCAGGCTAGGCAGATGGTGCAGGCAATGAGGACAATTGGA


 


ACTCATCCTAACTCTAGTGCTGGTCTGAGAGATAATCTTCTTGAAAATTTGCACGCCTAC


 


CAGAAACGAATGGGAGTGCAGATGCAGCGATTCAAGTGA






One cloned HA gene, pHA5, contained two nucleotide changes, nt #1172 and nt #1508 (in the wt), as compared to the wild-type HA gene sequence. A similar strategy was followed for constructing and creating clade 1 H5N1 influenza virus from Vietnam/1203/2003 VLPs (see below). The alignments of pHA5 nucleotide and amino acid sequences follow.












wt
1
...................ATGGAGAAAATAGTGCTTCTTCTTGCAATAG
31
seq id 10





                   |||||||||||||||||||||||||||||||




pHA5
51
ATTCGCCCTTAACGGTCCGATGGAGAAAATAGTGCTTCTTCTTGCAATAG
100
seq id 56


 




         .         .         .         .         .





32
TCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAAT
81





||||||||||||||||||||||||||||||||||||||||||||||||||





101
TCAGTCTTGTTAAAAGTGATCAGATTTGCATTGGTTACCATGCAAACAAT
150



 




         .         .         .         .         .





82
TCAACAGAGCAGGTTGACACAATCATGGAAAAGAACGTTACTGTTACACA
131





||||||||||||||||||||||||||||||||||||||||||||||||||





151
TCAACAGAGCAGGTTGACACAATCATGGAAAAGAACGTTACTGTTACACA
200



 




         .         .         .         .         .





132
TGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAG
181





||||||||||||||||||||||||||||||||||||||||||||||||||





201
TGCCCAAGACATACTGGAAAAGACACACAACGGGAAGCTCTGCGATCTAG
250



 




         .         .         .         .         .





182
ATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTC
231





||||||||||||||||||||||||||||||||||||||||||||||||||





251
ATGGAGTGAAGCCTCTAATTTTAAGAGATTGTAGTGTAGCTGGATGGCTC
300



 




         .         .         .         .         .





232
CTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTA
281





||||||||||||||||||||||||||||||||||||||||||||||||||





301
CTCGGGAACCCAATGTGTGACGAATTCATCAATGTACCGGAATGGTCTTA
350



 




         .         .         .         .         .





282
CATAGTGGAGAAGGCCAATCCAACCAATGACCTCTGTTACCCAGGGAGTT
331





||||||||||||||||||||||||||||||||||||||||||||||||||





351
CATAGTGGAGAAGGCCAATCCAACCAATGACCTCTGTTACCCAGGGAGTT
400



 




         .         .         .         .         .





332
TCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTT
381





||||||||||||||||||||||||||||||||||||||||||||||||||





401
TCAACGACTATGAAGAACTGAAACACCTATTGAGCAGAATAAACCATTTT
450



 




         .         .         .         .         .





382
GAGAAAATTCAAATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTC
431





||||||||||||||||||||||||||||||||||||||||||||||||||





451
GAGAAAATTCAAATCATCCCCAAAAGTTCTTGGTCCGATCATGAAGCCTC
500



 




         .         .         .         .         .





432
ATCAGGAGTGAGCTCAGCATGTCCATACCTGGGAAGTCCCTCCTTTTTTA
481





||||||||||||||||||||||||||||||||||||||||||||||||||





501
ATCAGGAGTGAGCTCAGCATGTCCATACCTGGGAAGTCCCTCCTTTTTTA
550



 




         .         .         .         .         .





482
GAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAG
531





||||||||||||||||||||||||||||||||||||||||||||||||||





551
GAAATGTGGTATGGCTTATCAAAAAGAACAGTACATACCCAACAATAAAG
600



 




         .         .         .         .         .





532
AAAAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGAAT
581





||||||||||||||||||||||||||||||||||||||||||||||||||





601
AAAAGCTACAATAATACCAACCAAGAAGATCTTTTGGTACTGTGGGGAAT
650



 




         .         .         .         .         .





582
TCACCATCCTAATGATGCGGCAGAGCAGACAAGGCTATATCAAAACCCAA
631





||||||||||||||||||||||||||||||||||||||||||||||||||





651
TCACCATCCTAATGATGCGGCAGAGCAGACAAGGCTATATCAAAACCCAA
700



 




         .         .         .         .         .





632
CCACCTATATTTCCATTGGGACATCAACACTAAACCAGAGATTGGTACCA
681





||||||||||||||||||||||||||||||||||||||||||||||||||





701
CCACCTATATTTCCATTGGGACATCAACACTAAACCAGAGATTGGTACCA
750



 




         .         .         .         .         .





682
AAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTT
731





||||||||||||||||||||||||||||||||||||||||||||||||||





751
AAAATAGCTACTAGATCCAAAGTAAACGGGCAAAGTGGAAGGATGGAGTT
800



 




         .         .         .         .         .





732
CTTCTGGACAATTTTAAAACCTAATGATGCAATCAACTTCGAGAGTAATG
781





||||||||||||||||||||||||||||||||||||||||||||||||||





801
CTTCTGGACAATTTTAAAACCTAATGATGCAATCAACTTCGAGAGTAATG
850



 




         .         .         .         .         .





782
GAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGAC
831





||||||||||||||||||||||||||||||||||||||||||||||||||





851
GAAATTTCATTGCTCCAGAATATGCATACAAAATTGTCAAGAAAGGGGAC
900



 




         .         .         .         .         .





832
TCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTG
881





||||||||||||||||||||||||||||||||||||||||||||||||||





901
TCAGCAATTATGAAAAGTGAATTGGAATATGGTAACTGCAACACCAAGTG
950



 




         .         .         .         .         .





882
TCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATAC
931





||||||||||||||||||||||||||||||||||||||||||||||||||





951
TCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAACATAC
1000



 




         .         .         .         .         .





932
ACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTA
981





||||||||||||||||||||||||||||||||||||||||||||||||||





1001
ACCCTCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTA
1050



 




         .         .         .         .         .





982
GTCCTTGCAACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGCAGAAGAAA
1031





||||||||||||||||||||||||||||||||||||||||||||||||||





1051
GTCCTTGCAACAGGGCTCAGAAATAGCCCTCAAAGAGAGAGCAGAAGAAA
1100



 




         .         .         .         .         .





1032
AAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGC
1081





||||||||||||||||||||||||||||||||||||||||||||||||||





1101
AAAGAGAGGACTATTTGGAGCTATAGCAGGTTTTATAGAGGGAGGATGGC
1150



 




         .         .         .         .         .





1082
AGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGG
1131





||||||||||||||||||||||||||||||||||||||||||||||||||





1151
AGGGAATGGTAGATGGTTGGTATGGGTACCACCATAGCAATGAGCAGGGG
1200



 




         .         .         .         .         .





1132
AGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATAGATGGAGT
1181





||||||||||||||||||||||||||||||||||||||||| ||||||||





1201
AGTGGGTACGCTGCAGACAAAGAATCCACTCAAAAGGCAATGGATGGAGT
1250



 




         .         .         .         .         .





1182
CACCAATAAGGTCAACTCAATCATTGACAAAATGAACACTCAGTTTGAGG
1231





||||||||||||||||||||||||||||||||||||||||||||||||||





1251
CACCAATAAGGTCAACTCAATCATTGACAAAATGAACACTCAGTTTGAGG
1300



 




         .         .         .         .         .





1232
CCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAAC
1281





||||||||||||||||||||||||||||||||||||||||||||||||||





1301
CCGTTGGAAGGGAATTTAATAACTTAGAAAGGAGAATAGAGAATTTAAAC
1350



 




         .         .         .         .         .





1282
AAGAAGATGGAAGACGGGTTTCTAGATGTCTGGACTTATAATGCCGAACT
1331





||||||||||||||||||||||||||||||||||||||||||||||||||





1351
AAGAAGATGGAAGACGGGTTTCTAGATGTCTGGACTTATAATGCCGAACT
1400



 




         .         .         .         .         .





1332
TCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATG
1381





||||||||||||||||||||||||||||||||||||||||||||||||||





1401
TCTGGTTCTCATGGAAAATGAGAGAACTCTAGACTTTCATGACTCAAATG
1450



 




         .         .         .         .         .





1382
TTAAGAACCTCTACGAGAAGGTCCGACTACAGCTTAGGGATAATGCAAAG
1431





||||||||||||||||||||||||||||||||||||||||||||||||||





1451
TTAAGAACCTCTACGACAAGGTCCGACTACAGCTTAGGGATAATGCAAAG
1500



 




         .         .         .         .         .





1432
GAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATG
1481





||||||||||||||||||||||||||||||||||||||||||||||||||





1501
GAGCTGGGTAACGGTTGTTTCGAGTTCTATCACAAATGTGATAATGAATG
1550



 




         .         .         .         .         .





1482
TATGGAAAGTATAAGAAACGGAACGTACAACTATCCGCAGTATTCAGAAG
1531





|||||||||||||||||||||||||| |||||||||||||||||||||||





1551
TATGGAAAGTATAAGAAACGGAACGTGCAACTATCCGCAGTATTCAGAAG
1600



 




         .         .         .         .         .





1532
AAGCAAGATTAAAAAGAGAGGAAATAAGTGGGGTAAAATTGGAATCAATA
1581





||||||||||||||||||||||||||||||||||||||||||||||||||





1601
AAGCAAGATTAAAAAGAGAGGAAATAAGTGGGGTAAAATTGGAATCAATA
1650



 




         .         .         .         .         .





1582
GGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGC
1631





||||||||||||||||||||||||||||||||||||||||||||||||||





1651
GGAACTTACCAAATACTGTCAATTTATTCAACAGTGGCGAGTTCCCTAGC
1700



 




         .         .         .         .         .





1632
ACTGGCAATCATGATGGCTGGTCTATCTTTATGGATGTGCTCCAATGGAT
1681





||||||||||||||||||||||||||||||||||||||||||||||||||





1701
ACTGGCAATCATGATGGCTGGTCTATCTTTATGGATGTGCTCCAATGGAT
1750



 




         .         .         .         .         .





1682
CGTTACAATGCAGAATTTGCATtTAA........................
1707





||||||||||||||||||||||||||





1751
CGTTACAATGCAGAATTTGCATTTAAAAGCTTTAAGGGCGAATTCCAGCA
1800





                         .








Amino Sequence Alignment of Hemagglutinin













pHA5
1
MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILE
50
seq id 57





||||||||||||||||||||||||||||||||||||||||||||||||||




wt
1
MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILE
50
seq id 58


 




         .         .         .         .         .





51
KTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKAN
100





||||||||||||||||||||||||||||||||||||||||||||||||||





51
KTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKAN
100



 




         .         .         .         .         .





101
PTNDLCYPGSFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASSGVSSA
150





||||||||||||||||||||||||||||||||||||||||||||||||||





101
PTNDLCYPGSFNDYEELKHLLSRINHFEKIQIIPKSSWSDHEASSGVSSA
150



 




         .         .         .         .         .





151
CPYLGSPSFFRNVVWLIKKNSTYPTIKKSYNNTNQEDLLVLWGIHHPNDA
200





||||||||||||||||||||||||||||||||||||||||||||||||||





151
CPYLGSPSFFRNVVWLIKKNSTYPTIKKSYNNTNQEDLLVLWGIHHPNDA
200



 




         .         .         .         .         .





201
AEQTRLYQNPTTYISIGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILK
250





||||||||||||||||||||||||||||||||||||||||||||||||||





201
AEQTRLYQNPTTYISIGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILK
250



 




         .         .         .         .         .





251
PNDAINFESNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGA
300





||||||||||||||||||||||||||||||||||||||||||||||||||





251
PNDAINFESNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGA
300



 




         .         .         .         .         .





301
INSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRESRRKKRGLFG
350





||||||||||||||||||||||||||||||||||||||||||||||||||





301
INSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRESRRKKRGLFG
350



 




         .         .         .         .         .





351
AIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAMDGVTNKVNS
400





||||||||||||||||||||||||||||||||||||||||.|||||||||





351
AIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNS
400



 




         .         .         .         .         .





401
IIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMEN
450





||||||||||||||||||||||||||||||||||||||||||||||||||





401
IIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMEN
450



 




         .         .         .         .         .





451
ERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESIRN
500





||||||||||||||||||||||||||||||||||||||||||||||||||





451
ERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESIRN
500



 




         .         .         .         .         .





501
GTCNYPQYSEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMMA
550





|| |||||||||||||||||||||||||||||||||||||||||||||||





501
GTYNYPQYSEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMMA
550



 




         .





551
GLSLWMCSNGSLQCRICI.
568





||||||||||||||||||





551
GLSLWMCSNGSLQCRICI*
569







Example 26
Generation of Influenza A/Indonesia/5/05 HA, NA, and M1 Genes Optimized for Efficient Expression in Sf9 Cells.
The following polypeptides were derived from codon-optimized nucleotides corresponding to the Indonesia/5/05 HA gene (see example 31). The codon-optimized nucleotides were designed and produced (Geneart GMBH, Regensburg, FRG) according to the methods disclosed in US patent publication 2005/0118191, herein incorporated by reference in its entirety for all proposes. See Example 31 for nucleic acid sequences







Vac2-hac-opt (unmodified aa sequence) (SEQ ID 27)


MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV


 


TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN


 


PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL


 


LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF


 


RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA


 


AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG


 


RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI


 


MKSELEYGNC NTKCQTPMGA INSSMPFHNI HPLTIGECPK


 


YVKSNRLVLA TGLRNSPQRE SRRKKRGLFG AIAGFIEGGW


 


QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS


 


IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY


 


NAELLVLMEN ERTLDFHDSN VKNLYDKVRL QLRDNAKELG


 


NGCFEFYHKC DNECMESIRN GTYNYPQYSE EARLKREEIS


 


GVKLESIGTY QILSIYSTVA SSLALAIMMA GLSLWMCSNG


 


SLQCRICI*













Vac2-hac-spc-opt


(modified, signal peptide from Chitinase, under-


lined) (SEQ ID 28)


Mplykllnvlwlvavsnaip DQICIGYHANNSTE QVDTIMEKNV


 


TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN


 


PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL


 


LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF


 


RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA


 


AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG


 


RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI


 


MKSELEYGNC NTKCQTPMGA INSSMPFHNI HPLTIGECPK


 


YVKSNRLVLA TGLRNSPQRE SRRKKRGLFG AIAGFIEGGW


 


QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS


 


IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY


 


NAELLVLMEN ERTLDFHDSN VKNLYDKVRL QLRDNAKELG


 


NGCFEFYHKC DNECMESIRN GTYNYPQYSE EARLKREEIS


 


GVKLESIGTY QILSIYSTVA SSLALAIMMA GLSLWMCSNG


 


SLQCRICI*













Vac2-hac-sph9-opt (modified, signal peptide from


H9, underlined)


(SEQ ID 29)


METISLITIL LVVTASNA DQICIGYHANNSTE QVDTIMEKNV


 


TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN


 


PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL


 


LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF


 


RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA


 


AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG


 


RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI


 


MKSELEYGNC NTKCQTPMGA INSSMPFHNI HPLTIGECPK


 


YVKSNRLVLA TGLRNSPQRE SRRKKRGLFG AIAGFIEGGW


 


QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS


 


IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY


 


NAELLVLMEN ERTLDFHDSN VKNLYDKVRL QLRDNAKELG


 


NCCFEFYHKC DNECMESIRN GTYNYPQYSE EARLKREEIS


 


GVKLESIGTY QILSIYSTVA SSLALAIMMA GLSLWMCSNG


 


SLQCRICI*













Vac2-hac-cs-opt (- is the modified cleavage site)


(SEQ ID 30)


MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV


 


TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN


 


PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL


 


LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF


 


RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA


 


AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG


 


RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI


 


MKSELEYGNC NTKCQTPMGA INSSMPFHNI HPLTIGECPK


 


YVKSNRLVLA TGLRNSPQRE S----RGLFG AIAGFIEGGW


 


QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS


 


IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY


 


NAELLVLMEN ERTLDFHDSN VKNLYDKVRL QLRDNAKELG


 


NGCFEFYHKC DNECMESIRN GTYNYPQYSE EARLKREEIS


 


GVKLESIGTY QILSIYSTVA SSLALAIMMA GLSLWMCSNG


 


SLQCRICI*






The following polypeptides corresponding to unmodified, codon-optimized NA and M1 genes where also synthesized.









Vac2-naj-opt (neuraminidase) (SEQ ID 31)



MNPNQKIITI GSICMVIGIV SLMLQIGNMI SIWVSHSIQT


 



GNQHQAESIS NTNPLTEKAV ASVTLAGNSS LCPIRGWAVH


 



SKDNNIRIGS KGDVFVIREP FISCSHLECR TFFLTQGALL


 



NDKHSNGTVK DRSPHRTLMS CPVGEAPSPY NSRFESVAWS


 



ASACHDGTSW LTIGISGPDN EAVAVLKYNG IITDTIKSWR


 



NNILRTQESE CACVNGSCFT VMTDGPSDGQ ASYKIFKMEK


 



GKVVKSVELD APNYHYEECS CYPDAGEITC VCRDNWHGSN


 



RPWVSFNQNL EYQIGYICSG VFGDNPRPND GTGSCGPMSP


 



NGAYGVKGFS FKYGNGVWIG RTKSTNSRSG FEMIWDPNGW


 



TGTDSSFSVK QDIVAITDWS GYSGSFVQHP ELTGLDCIRP


 



CFWVELIRGR PKESTIWTSG SSISFCGVNS DTVSWSWPDG


 



AELPFTIDK*















Vac2-mc-opt (matrix) (SEQ ID 32)



MSLLTEVETY VLSIIPSGPL KAEIAQKLED VFAGKNTDLE


 



ALMEWLKTRP ILSPLTKGIL GFVFTLTVPS ERGLQRRRFV


 



QNALNGNGDP NNMDRAVKLY KKLKREITFH GAKEVSLSYS


 



TGALASCMGL IYNRMGTVTT EVAFGLVCAT CEQIADSQHR


 



SHRQMATITN PLIRHENRMV LASTTAKAME QMAGSSEQAA


 



EAMEVANQAR QMVQAMRTIG THPNSSAGLR DNLLENLQAY


 



QKRMGVQMQR FK*






The synthetic, codon-optimized HA, NA, and M1 genes were subcloned into pFastBac1 transfer plasmid using BamHI and HindIII sites, as described above. Recombinant bacmids for expression in Sf9 cells of synthetic HA, NA, M1 genes were generated as described above, using E. coli strain DH10Bac (Invitrogen).
Example 24
Cloning for Clade 1 A/Viet Nam/1203/04 (H5N1) Influenza Virus by RT-PCR
The HA, NA and M1 genes were cloned by RT-PCR according to the above describes method. The below sequences are comparisons of the published gene compared to the cloned genes.
The HA gene for Clade 1 A/Viet Nam/1203/04 (H5N1)








Upper Lane: Acc #AY818135 HA gene (SEQ ID 36)



Lower Lane: Novavax's A/Vietnam/1203/2004 (H5N1) HA gene


(SEQ ID 37)










1
........................................ATGGAGAAAA
10




                                        ||||||||||



301
AGTGTGATGGATATCTGCAGAATTCGCCCTTAGGCGCGCCATGGAGAAAA
350


 



         .         .         .         .         .



11
TAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGC
60



||||||||||||||||||||||||||||||||||||||||||||||||||



351
TAGTGCTTCTTTTTGCAATAGTCAGTCTTGTTAAAAGTGATCAGATTTGC
400


 



         .         .         .         .         .



61
ATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGA
110



||||||||||||||||||||||||||||||||||||||||||||||||||



401
ATTGGTTACCATGCAAACAACTCGACAGAGCAGGTTGACACAATAATGGA
450


 



         .         .         .         .         .



111
AAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGAAACACA
160



||||||||||||||||||||||||||||||||||||||||||||||||||



451
AAAGAACGTTACTGTTACACATGCCCAAGACATACTGGAAAAGAAACACA
500


 



         .         .         .         .         .



161
ACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGAT
210



||||||||||||||||||||||||||||||||||||||||||||||||||



501
ACGGGAAGCTCTGCGATCTAGATGGAGTGAAGCCTCTAATTTTGAGAGAT
550


 



         .         .         .         .         .



211
TGTAGCGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCAT
260



||||||||||||||||||||||||||||||||||||||||||||||||||



551
TGTAGCGTAGCTGGATGGCTCCTCGGAAACCCAATGTGTGACGAATTCAT
600


 



         .         .         .         .         .



261
CAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATG
310



||||||||||||||||||||||||||||||||||||||||||||||||||



601
CAATGTGCCGGAATGGTCTTACATAGTGGAGAAGGCCAATCCAGTCAATG
650


 



         .         .         .         .         .



311
ACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTA
360



||||||||||||||||||||||||||||||||||||||||||||||||||



651
ACCTCTGTTACCCAGGGGATTTCAATGACTATGAAGAATTGAAACACCTA
700


 



         .         .         .         .         .



361
TTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTC
410



||||||||||||||||||||||||||||||||||||||||||||||||||



701
TTGAGCAGAATAAACCATTTTGAGAAAATTCAGATCATCCCCAAAAGTTC
750


 



         .         .         .         .         .



411
TTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACC
460



||||||||||||||||||||||||||||||||||||||||||||||||||



751
TTGGTCCAGTCATGAAGCCTCATTAGGGGTGAGCTCAGCATGTCCATACC
800


 



         .         .         .         .         .



461
AGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAAC
510



||||||||||||||||||||||||||||||||||||||||||||||||||



801
AGGGAAAGTCCTCCTTTTTCAGAAATGTGGTATGGCTTATCAAAAAGAAC
850


 



         .         .         .         .         .



511
AGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGA
560



||||||||||||||||||||||||||||||||||||||||||||||||||



851
AGTACATACCCAACAATAAAGAGGAGCTACAATAATACCAACCAAGAAGA
900


 



         .         .         .         .         .



561
TCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGA
610



||||||||||||||||||||||||||||||||||||||||||||||||||



901
TCTTTTGGTACTGTGGGGGATTCACCATCCTAATGATGCGGCAGAGCAGA
950


 



         .         .         .         .         .



611
CAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACA
660



||||||||||||||||||||||||||||||||||||||||||||||||||



951
CAAAGCTCTATCAAAACCCAACCACCTATATTTCCGTTGGGACATCAACA
1000


 



         .         .         .         .         .



661
CTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGG
710



||||||||||||||||||||||||||||||||||||||||||||||||||



1001
CTAAACCAGAGATTGGTACCAAGAATAGCTACTAGATCCAAAGTAAACGG
1050


 



         .         .         .         .         .



711
GCAAAGTGGAAGGATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATG
760



||||||||||||||||||||||||||||||||||||||||||||||||||



1051
GCAAAGTCGAAGGATGGAGTTCTTCTGGACAATTTTAAAGCCGAATGATG
1100


 



         .         .         .         .         .



761
CAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATAC
810



||||||||||||||||||||||||||||||||||||||||||||||||||



1101
CAATCAACTTCGAGAGTAATGGAAATTTCATTGCTCCAGAATATGCATAC
1150


 



         .         .         .         .         .



811
AAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATA
860



||||||||||||||||||||||||||||||||||||||||||||||||||



1151
AAAATTGTCAAGAAAGGGGACTCAACAATTATGAAAAGTGAATTGGAATA
1200


 



         .         .         .         .         .



861
TGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTA
910



||||||||||||||||||||||||||||||||||||||||||||||||||



1201
TGGTAACTGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTA
1250


 



         .         .         .         .         .



911
GCATGCCATTCCACAATATACACCCTCTCACCATTGGGGAATGCCCCAAA
960



||||||||||||||||||||||||||||||||||||||||||||||||||



1251
GCATGCCATTCCACAATATACACCCTCTCACCATTGGGGAATGCCCCAAA
1300


 



         .         .         .         .         .



961
TATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCC
1010



||||||||||||||||||||||||||||||||||||||||||||||||||



1301
TATGTGAAATCAAACAGATTAGTCCTTGCGACTGGGCTCAGAAATAGCCC
1350


 



         .         .         .         .         .



1011
TCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAG
1060



||||||||||||||||||||||||||||||||||||||||||||||||||



1351
TCAAAGAGAGAGAAGAAGAAAAAAGAGAGGATTATTTGGAGCTATAGCAG
1400


 



         .         .         .         .         .



1061
GTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTAC
1110



||||||||||||||||||||||||||||||||||||||||||||||||||



1401
GTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGGTAC
1450


 



         .         .         .         .         .



1111
CACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCAC
1160



||||||||||||||||||||||||||||||||||||||||||||||||||



1451
CACCATAGCAATGAGCAGGGGAGTGGGTACGCTGCAGACAAAGAATCCAC
1500


 



         .         .         .         .         .



1161
TCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACA
1210



||||||||||||||||||||||||||||||||||||||||||||||||||



1501
TCAAAAGGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACA
1550


 



         .         .         .         .         .



1211
AAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAA
1260



||||||||||||||||||||||||||||||||||||||||||||||||||



1551
AAATGAACACTCAGTTTGAGGCCGTTGGAAGGGAATTTAACAACTTAGAA
1600


 



         .         .         .         .         .



1261
AGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGT
1310



||||||||||||||||||||||||||||||||||||||||||||||||||



1601
AGGAGAATAGAGAATTTAAACAAGAAGATGGAAGACGGGTTCCTAGATGT
1650


 



         .         .         .         .         .



1311
CTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTC
1360



||||||||||||||||||||||||||||||||||||||||||||||||||



1651
CTGGACTTATAATGCTGAACTTCTGGTTCTCATGGAAAATGAGAGAACTC
1700


 



         .         .         .         .         .



1361
TAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTA
1410



||||||||||||||||||||||||||||||||||||||||||||||||||



1701
TAGACTTTCATGACTCAAATGTCAAGAACCTTTACGACAAGGTCCGACTA
1750


 



         .         .         .         .         .



1411
CAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTA
1460



||||||||||||||||||||||||||||||||||||||||||||||||||



1751
CAGCTTAGGGATAATGCAAAGGAGCTGGGTAACGGTTGTTTCGAGTTCTA
1800


 



         .         .         .         .         .



1461
TCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGAACGTATG
1510



||||||||||||||||||||||||||||||||||||||||||||||||||



1801
TCATAAATGTGATAATGAATGTATGGAAAGTGTAAGAAATGGAACGTATG
1850


 



         .         .         .         .         .



1511
ACTACCCGCAGTATTCAGAAGAAGCGAGACTAAAAAGAGAGGAAATAAGT
1560



||||||||||||||||||||||||||||||||||||||||||||||||||



1851
ACTACCCGCAGTATTCAGAAGAAGCGAGACTAAAAAGAGAGGAAATAAGT
1900


 



         .         .         .         .         .



1561
GGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTC
1610



||||||||||||||||||||||||||||||||||||||||||||||||||



1901
GGAGTAAAATTGGAATCAATAGGAATTTACCAAATACTGTCAATTTATTC
1950


 



         .         .         .         .         .



1611
TACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCT
1660



||||||||||||||||||||||||||||||||||||||||||||||||||



1951
TACAGTGGCGAGTTCCCTAGCACTGGCAATCATGGTAGCTGGTCTATCCT
2000


 



         .         .         .         .         .



1661
TATGGATGTGCTCCAATGGATCGTTACAATGCAGAATTTGCATTTAA...
1707



||||||||||||||||||| |||||||||||||||||||||||||||



2001
TATGGATGTGCTCCAATGGGTCGTTACAATGCAGAATTTGCATTTAAGCG
2050






Comparison of the NA Genes









The NA gene for Clade 1 A/Viet Nam/1203/04 (H5N1)



(SEQ ID 39)


H5N1naLANL ISDN 38704 × NA_Viet1203_Lark(NVAX)


(SEQ ID 38)










1
.....ATGAATCCAAATCAGAAGATAATAACCATCGGATCAATCTGTATG
45




     |||||||||||||||||||||||||||||||||||||||||||||



451
CCGGGATGAATCCAAATCAGAAGATAATAACCATCGGATCAATCTGTATG
500


 



         .         .         .         .         .



46
GTAACTGGAATAGTTAGCTTAATGTTACAAATTGGGAACATGATCTCAAT
95



||||||||||||||||||||||||||||||||||||||||||||||||||



501
GTAACTGGAATAGTTAGCTTAATGTTACAAATTGGGAACATGATCTCAAT
550


 



         .         .         .         .         .



96
ATGGGTCAGTCATTCAATTCACACAGGGAATCAACACCAATCTGAACCAA
145



||||||||||||||||||||||||||||||||||||||||||||||||||



551
ATGGGTCAGTCATTCAATTCACACAGGGAATCAACACCAATCTGAACCAA
600


 



         .         .         .         .         .



146
TCAGCAATACTAATTTTCTTACTGAGAAAGCTGTGGCTTCAGTAAAATTA
195



||||||||||||||||||||||||||||||||||||||||||||||||||



601
TCAGCAATACTAATTTTCTTACTGAGAAAGCTGTGGCTTCAGTAAAATTA
650


 



         .         .         .         .         .



196
GCGGGCAATTCATCTCTTTGCCCCATTAACGGATGGGCTGTATACAGTAA
245



||||||||||||||||||||||||||||||||||||||||||||||||||



651
GCGGGCAATTCATCTCTTTGCCCCATTAACGGATGGGCTGTATACAGTAA
700


 



         .         .         .         .         .



246
GGACAACAGTATAAGGATCGGTTCCAAGGGGGATGTGTTTGTTATAAGAG
295



||||||||||||||||||||||||||||||||||||||||||||||||||



701
GGACAACAGTATAAGGATCGGTTCCAAGGGGGATGTGTTTGTTATAAGAG
750


 



         .         .         .         .         .



296
AGCCGTTCATCTCATGCTCCCACTTGGAATGCAGAACTTTCTTTTTGACT
345



||||||||||||||||||||||||||||||||||||||||||||||||||



751
AGCCGTTCATCTCATGCTCCCACTTGGAATGCAGAACTTTCTTTTTGACT
800


 



         .         .         .         .         .



346
CAGGGAGCCTTGCTGAATGACAAGCACTCCAATGGGACTGTCAAAGACAG
395



|||||||||| |||||||||||||||||||||||||||||||||||||||



801
CAGGGAGCCTCGCTGAATGACAAGCACTCCAATGGGACTGTCAAAGACAG
850


 



         .         .         .         .         .



396
AAGCCCTCACAGAACATTAATGAGTTGTCCTGTGGGTGAGGCTCCCTCCC
445



||||||||||||||||||||||||||||||||||||||||||||||||||



851
AAGCCCTCACAGAACATTAATGAGTTGTCCTGTGGGTGAGGCTCCCTCCC
900


 



         .         .         .         .         .



446
CATATAACTCAAGGTTTGAGTCTGTTGCTTGGTCAGCAAGTGCTTGCCAT
495



||||||||||||||||||||||||||||||||||||||||||||||||||



901
CATATAACTCAAGGTTTGAGTCTGTTGCTTGGTCAGCAAGTGCTTGCCAT
950


 



         .         .         .         .         .



496
GATGGCACCAGTTGGTTGACGATTGGAATTTCTGGCCCAGACAATGGGGC
545



||||||||||||||||||||||||||||||||||||||||||||||||||



951
GATGGCACCAGTTGGTTGACGATTGGAATTTCTGGCCCAGACAATGGGGC
1000


 



         .         .         .         .         .



546
TGTGGCTGTATTGAAATACAATGGCATAATAACAGACACTATCAAGAGTT
595



||||||||||||||||||||||||||||||||||||||||||||||||||



1001
TGTGGCTGTATTGAAATACAATGGCATAATAACAGACACTATCAAGAGTT
1050


 



         .         .         .         .         .



596
GGAGGAACAACATACTGAGAACTCAAGAGTCTGAATGTGCATGTGTAAAT
645



||||||||||||||||||||||||||||||||||||||||||||||||||



1051
GGAGGAACAACATACTGAGAACTCAAGAGTCTGAATGTGCATGTGTAAAT
1100


 



         .         .         .         .         .



646
GGCTCTTGCTTTACTGTAATGACTGACGGACCAAGTAATGGTCAGGCATC
695



||||||||||||||||||||||||||||||||||||||||||||||||||



1101
GGCTCTTGCTTTACTGTAATGACTGACGGACCAAGTAATGGTCAGGCATC
1150


 



         .         .         .         .         .



696
ACATAAGATCTTCAAAATGGAAAAAGGGAAAGTGGTTAAATCAGTCGAAT
745



||||||||||||||||||||||||||||||||||||||||||||||||||



1151
ACATAAGATCTTCAAAATGGAAAAAGGGAAAGTGGTTAAATCAGTCGAAT
1200


 



         .         .         .         .         .



746
TGGATGCTCCTAATTATCACTATGAGGAATGCTCCTGTTATCCTAATGCC
795



||||||||||||||||||||||||||||||||||||||||||||||||||



1201
TGGATGCTCCTAATTATCACTATGAGGAATGCTCCTGTTATCCTAATGCC
1250


 



         .         .         .         .         .



796
GGAGAAATCACATGTGTGTGCAGGGATAATTGGCATGGCTCAAATCGGCC
845



||||||||||||||||||||||||||||||||||||||||||||||||||



1251
GGAGAAATCACATGTGTGTGCAGGGATAATTGGCATGGCTCAAATCGGCC
1300


 



         .         .         .         .         .



846
ATGGGTATCTTTCAATCAAAATTTGGAGTATCAAATAGGATATATATGCA
895



||||||||||||||||||||||||||||||||||||||||||||||||||



1301
ATGGGTATCTTTCAATCAAAATTTGGAGTATCAAATAGGATATATATGCA
1350


 



         .         .         .         .         .



896
GTGGAGTTTTCGGAGACAATCCACGCCCCAATGATGGAACAGGTAGTTGT
945



||||||||||||||||||||||||||||||||||||||||||||||||||



1351
GTGGAGTTTTCGGAGACAATCCACGCCCCAATGATGGAACAGGTAGTTGT
1400


 



         .         .         .         .         .



946
GGTCCGGTGTCCTCTAACGGGGCATATGGGGTAAAAGGGTTTTCATTTAA
995



||||||||||||||||||||||||||||||||||||||||||||||||||



1401
GGTCCGGTGTCCTCTAACGGGGCATATGGGGTAAAAGGGTTTTCATTTAA
1450


 



         .         .         .         .         .



996
ATACGGCAATGGTGTCTGGATCGGGAGAACCAAAAGCACTAATTCCAGGA
1045



||||||||||||||||||||||||||||||||||||||||||||||||||



1451
ATACGGCAATGGTGTCTGGATCGGGAGAACCAAAAGCACTAATTCCAGGA
1500


 



         .         .         .         .         .



1046
GCGGCTTTGAAATGATTTGGGATCCAAATGGGTGGACTGAAACGGACAGT
1095



||||||||||||||||||||||||||||||||||||||||||||||||||



1501
GCGGCTTTGAAATGATTTGGGATCCAAATGGGTGGACTGAAACGGACAGT
1550


 



         .         .         .         .         .



1096
AGCTTTTCAGTGAAACAAGATATCGTAGCAATAACTGATTGGTCAGGATA
1145



||||||||||||||||||||||||||||||||||||||||||||||||||



1551
AGCTTTTCAGTGAAACAAGATATCGTAGCAATAACTGATTGGTCAGGATA
1600


 



         .         .         .         .         .



1146
TAGCGGGAGTTTTGTCCAGCATCCAGAACTGACAGGACTAGATTGCATAA
1195



||||||||||||||||||||||||||||||||||||||||||||||||||



1601
TAGCGGGAGTTTTGTCCAGCATCCAGAACTGACAGGACTAGATTGCATAA
1650


 



         .         .         .         .         .



1196
GACCTTGTTTCTGGGTTGAGTTGATCAGAGGGCGGCCCAAAGAGAGCACA
1245



||||||||||||||||||||||||||||||||||||||||||||||||||



1651
GACCTTGTTTCTGGGTTGAGTTGATCAGAGGGCGGCCCAAAGAGAGCACA
1700


 



         .         .         .         .         .



1246
ATTTGGACTAGTGGGAGCAGCATATCTTTTTGTGGTGTAAATAGTGACAC
1295



||||||||||||||||||||||||||||||||||||||||||||||||||



1701
ATTTGGACTAGTGGGAGCAGCATATCTTTTTGTGGTGTAAATAGTGACAC
1750


 



         .         .         .         .         .



1296
TGTGGGTTGGTCTTGGCCAGACGGTGCCGAGTTGCCATTCACCATTGACA
1345



||||||||||||||||||||||||||| ||||||||||||||||||||||



1751
TGTGGGTTGGTCTTGGCCAGACGGTGCTGAGTTGCCATTCACCATTGACA
1800


 



         .         .         .         .         .



1346
AGTAG.............................................
1350



|||||



1801
AGTAGGGGCCCTCGAGTAAGGGCGAATTCCAGCACACTGGCGGCCGTTAC
1850






Comparisons of the M1 Genes









The M1 gene for Clade 1 A/Viet Nam/1203/04 (H5N1)



(SEQ ID 40)


H5N1m1Lanl ISDN39958 × M1_Viet1203_Lark(NVAX)


(SEQ ID 41)











         .         .         .         .         .




1
..................................ATGAGTCTTCTAACCG
16



                                  ||||||||||||||||



301
ATATCTGCAGAATTCGCCCTTAGAATTCGACGTCATGAGTCTTCTAACCG
350


 



         .         .         .         .         .



17
AGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCCCCTCAAAGCC
66



||||||||||||||||||||||||||||||||||||||||||||||||||



351
AGGTCGAAACGTACGTTCTCTCTATCATCCCGTCAGGCCCCCTCAAAGCC
400


 



         .         .         .         .         .



67
GAGATCGCACAGAAACTTGAAGATGTCTTTGCAGGAAAGAACACCGATCT
116



||||||||||||||||||||||||||||||||||||||||||||||||||



401
GAGATCGCACAGAAACTTGAAGATGTCTTTGCAGGAAAGAACACCGATCT
450


 



         .         .         .         .         .



117
CGAGGCTGTCATGGAGTGGCTAAAGACAAGACCAATCCTGTCACCTCTGA
166



||||||||||||||||||||||||||||||||||||||||||||||||||



451
CGAGGCTCTCATGGAGTGGCTAAAGACAAGACCAATCCTGTCACCTCTGA
500


 



         .         .         .         .         .



167
CTAAAGGGATTTTGGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGA
216



||||||||||||||||||||||||||||||||||||||||||||||||||



501
CTAAAGGGATTTTGGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGA
550


 



         .         .         .         .         .



217
GGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTAAATGGAAATGGAGA
266



||||||||||||||||||||||||||||||||||||||||||||||||||



551
GGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTAAATGGAAATGGAGA
600


 



         .         .         .         .         .



267
TCCAAATAATATGGATAGGGCAGTTAAGCTATATAAGAAGCTGAAAAGAG
316



||||||||||||||||||||||||||||||||||||||||||||||||||



601
TCCAAATAATATGGATAGGGCAGTTAAGCTATATAAGAAGCTGAAAAGAG
650


 



         .         .         .         .         .



317
AAATAACATTCCATGGGGCTAAGGAGGTCGCACTCAGCTACTCAACCGGT
366



||||||||||||||||||||||||||||||||||||||||||||||||||



651
AAATAACATTCCATGGGGCTAAGGAGGTCGCACTCAGCTACTCAACCGGT
700


 



         .         .         .         .         .



367
GCACTTGCCAGTTGCATGGGTCTCATATACAACAGGATGGGAACGGTGAC
416



||||||||||||||||||||||||||||||||||||||||||||||||||



701
GCACTTGCCAGTTGCATGGGTCTCATATACAACAGGATGGGAACGGTGAC
750


 



         .         .         .         .         .



417
TACGGAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGAGCAGATTGCAG
466



||||||||||||||||||||||||||||||||||||||||||||||||||



751
TACGGAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGAGCAGATTGCAG
800


 



         .         .         .         .         .



467
ATTCACAGCATCGGTCTCACAGACAGATGGCAACTATCACCAACCCACTA
516



||||||||||||||||||||||||||||||||||||||||||||||||||



801
ATTCACAGCATCGGTCTCACAGACAGATGGCAACTATCACCAACCCACTA
850


 



         .         .         .         .         .



517
ATCAGACATGAGAACAGAATGGTGCTGGCCAGCACTACAGCTAAGGCTAT
566



||||||||||||||||||||||||||||||||||||||||||||||||||



851
ATCAGACATGAGAACAGAATGGTGCTGGCCAGCACTACAGCTAAGGCTAT
900


 



         .         .         .         .         .



567
GGAGCAGATGGCGGGATCAAGTGAGCAGGCAGCGGAAGCCATGGAGATCG
616



||||||||||||||||||||||||||||||||||||||||||||||||||



901
GGAGCAGATGGCGGGATCAAGTGAGCAGGCAGCGGAAGCCATGGAGATCG
950


 



         .         .         .         .         .



617
CTAATCAGGCTAGGCAGATGGTGCAGGCAATGAGGACAATTGGGACTCAT
666



||||||||||||||||||||||||||||||||||||||||||||||||||



951
CTAATCAGGCTAGGCAGATGGTGCAGGGAATGAGGACAATTGGGACTCAT
1000


 



         .         .         .         .         .



667
CCTAACTCTAGTGCTGGTCTGAGAGATAATCTTCTTGAAAATTTGCAGGC
716



||||||||||||||||||||||||||||||||||||||||||||||||||



1001
CCTAACTCTAGTGCTGGTCTGAGAGATAATCTTCTTGAAAATTTGCAGGC
1050


 



         .         .         .         .



717
CTACCAGAAACGAATGGGAGTGCAGATGCAGCGATTCAAGTGA




|||||||||||||||||||||||||||||||||||||||||||



1051
CTACCAGAAACGAATGGGAGTGCAGATGCAGCGATTCAAGTGA







All the sequences were cloned and analyzed according to the disclosed methods above.
Example 25
Generation of Clade 1 H5N1 Influenza A/Viet Nam/1203/04 HA, NA, and M1 Genes Optimized for Efficient Expression in Sf9 Cells
The following polypeptides were derived from codon-optimized nucleotides corresponding to A/Viet Nam/1203/04. The nucleotides were designed and synthesized (Geneart GMBH, Regensburg, FRG) as disclosed above (see Example 24).







VN1203-ha-cs-opt (modified cleavage site, under-


lined) (SEQ ID 33)


MEKIVLLFAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH


 


AQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSY


IVEKANPA


 


NDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKNSWSSHEASLGVSSACP


YQGKSSFF


 


RNVVWLIKKNNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNP


TTYISVGT


 


STLNQRLVPKIATRSKVNGQNGRMEFFWTILKPNDAINFESNGNFIAPEY


AYKIVKKG


 


DSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNR


LVLATGLR


 


NSPQRET----RGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADK


ESTQKAID


 


GVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNA


ELLVLMEN


 


ERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRN


GTYDYPQY


 


SEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCS


NGSLQCRI


 


CI*













VN1203-ha-spc-opt (modified signal peptide, under-


lined) (SEQ ID 34)


MplykllnvlwlvavsnaipDQICIGYHANNSTEQVDTIMEKNVTVTH


 


AQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSY


IVEKANPA


 


NDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKNSWSSHEASLGVSSACP


YQGKSSFF


 


RNVVWLIKKNNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNP


TTYISVGT


 


STLNQRLVPKIATRSKVNGQNGRMEFFWTILKPNDAINFESNGNFIAPEY


AYKIVKKG


 


DSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNR


LVLATGLR


 


NSPQRERRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADK


ESTQKAID


 


GVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKNEDGFLDVWTYNA


ELLVLMEN


 


ERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRN


GTYDYPQY


 


SEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCS


NGSLQCRI


 


CI*













VN1203-ha-sph9-apt (The signal peptide and


cleavage site are shaded) (SEQ ID 35)


METISLITIL LVVTASNA DQICIGYHANNSTEQVDTIMEKNVTVTH


 


AQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSY


IVEKANPA


 


NDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKNSWSSHEASLGVSSACP


YQGKSSFF


 


RNVVWLIKKNNAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNP


TTYISVGT


 


STLNQRLVPKIATRSKVNGQNGRMEFFWTILKPNDAINFESNGNFIAPEY


AYKIVKKG


 


DSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNR


LVLATGLR


 


NSPQRERRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADK


ESTQKAID


 


GVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNA


ELLVLMEN


 


ERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRN


GTYDYPQY


 


SEEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCS


NGSLQCRI


 


CI*






Example 26
H5N1 Vietnam/1203/2003 VLP Immunogenicity (Extreme Dose Sparing)
BALB/C mice were immunized intramuscularly and intranasally with H5N1 VLPs at very low doses of VLPs (0.2, 0.04, 0.008, 0.0016 μg HA/dose), Mice were bled on days 0, 21 and 35. The mice were given a boost on day 21. The serum was assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) using turkey RBCs and influenza virus using an ELISA. Results of this study are shown in FIGS. 24 and 25.
The results indicate that a robust overall immune response was observed when the VLPs were administered intramuscularly at very lose doses. The robustness of the response was similar to control at 3.0 and 0.6 μg HA/dose. These data show see a true dose response and the antibody response to 0.2 μg of VLP is greater than 3.0 μg of rHA protein. Although the response was not as robust for the intranasal administration, a dose of VLPs at 0.2 μg HA/dose did induce a robust response. The ELISA titer with the 0.2 μg dose in this experiment is similar to the 0.12 μg dose of the H3N2 VLP vaccine in previous experiments, see above.
Example 27
Challenge Studies
After inoculating BALB/c mice with VLPs at concentrations of 3 μg, 0.6 μg 0.12 μg and 0.02 μg of H3N2 VLPs intramuscularly and intranasally (total HA dose), mice were challenged with influenza virus A/Aichi/268x3 1. The results of this study are shown on FIGS. 27 and 28. These data show that there is a decrease in weight in all vaccinated animals, however the animals that were vaccinated with 3.0 μg and 0.12 μg of VLPs recovered quicker than the other animals in both intramuscular and intranasal vaccinations. The intranasal doses provided enhanced protection.
Example 29
Challenge Studies (Ferrets)
In this study, ferrets were vaccinated with H9N2 VLPs. There were a total of 18 ferrets in the challenge study: 6 mock vaccinated, 6 vaccinated with medium dose (1.5 μg), and 6 vaccinated with high dose (15.0 μg) intramuscularly. Next, ferrets were challenged with 106 EID50 of A/HK/1073/99 intranasally. Nasal washes were collected on days 1, 3, 5 and 7. The virus in the nasal washes was titered on days 3, 5 and 7 for all animals. These data are represented on Table 2 and in FIG. 29. These data show that by day 7, all of the vaccinated animals had no detectable virus in nasal washes while the mock group had detectable viral titers.







TABLE 2







Wild Type Virus Titers (log 10/ml) in Ferrets after viral challenge












Ferret
Day 3
Day 5
Day 7











Group: Placebo Mock Control (n = 6)












4512
7
5.5
3.5



4524
6.5
6.75
1.98



4525
7.5
6.5
6.75



4526
7.5
7.25
3.5



4527
6.75
7.25
2.5



4528
7.5
6.25
2.75



Mean
7.125
6.583333
3.496667



Std. Dev.
0.44017
0.66458
1.699137







Group: Low Dose












3916
6.75
2.75
1.5



3917
7.5
5.5
1.5



3918
7.5
6.5
1.5



3919
5.5
3
1.5



3920
6.75
2.25
1.5



3921
6.5
3.5
1.5



Avg
6.75
3.916667
1.5



Std Dev
0.74162
1.693123
0







Group: High Dose












3922
6.5
2.75
1.5



3923
6.25
3.75
1.5



3924
5.75
1.5
1.5



3925
6.5
4.75
1.5



3926
6.25
3.5
1.5



3927
5.75
1.5
1.5



Avg.
6.166667
2.958333
1.5



Std Dev
0.341565
1.298236
0










Example 30
Mice Intramuscular and Intranasal Inoculation Studies
Mice were inoculated with A/Fujian/411/2002 (H3N2) VLPs at concentrations of 3 μg, 0.6 μg 0.12 μg or 0.024 μg (total HA dose) intramuscularly or intranasally at day 0 and were boosted 3 weeks later. Control mice were inoculated with formalin inactivated A/Wyoming (Fujian-Like, vaccine strain) or PBS. Sera were collected from the inoculated mice at weeks 0, 3, 5 and 8. The collected sera were assayed for anti-HA antibodies by the hemagglutination inhibition assay (HI) for anti-influenza antibodies by ELISA. The assay was conducted using A/Fujian/411/2002, A/Panama/2007/99, A/Wyoming/3/03 and A/New York/55/2004 influenza virus strains of H3N2. Results of this study are shown on FIGS. 30 A-H. These data indicate the H3N2 VLPs induced antibodies against the parent A/Fujian/411/2002 strains of influenza virus and against other H3N2 strains. These data also indicate that the titers in intranasally inoculated mice rise later than intramuscularly inoculated mice. However, the intranasal titers are higher than intramuscular titers after about 8 weeks. In addition, titers to the inactivated virus antigen appear to be comparable to the VLP at equivalent doses following intramuscular inoculation. However, the inactivated antigen does not appear to be as immunogenic following intranasal inoculation, nor is it as broadly protective following intranasal inoculation.
Example 31
Generation of Clade 2 H5N1 Influenza HA, NA, and M1 Genes Optimized for Efficient Expression in Sf9 Cells
The following optimized nucleotides and polypeptides corresponding to HA, NA and M1 of Clade 2 H5N1 viruses, A A/Indonesia/5/05, A/Bar headed goose/Qinghai/1A/2005 and A/Anhui/1/2005, were designed and synthesized (Geneart GMBH, Regensburg, FRG) as disclosed above. The optimized nucleotides and polypeptides are listed below. In order to make VLPs, A/Anhui HA can be expressed with A/Indonesia NA and M1. For VLPs comprising A/Quinghai HA and NA, A/Indonesia M1 gene can be co-expressed with A/Quinghai HA and NA.








A/INDONESIA/5/05



A/INDONESIA Optimized HA


(Start and stop codon are underlined)








(SEQ ID 42)









GGTACCGGATCCGCCACCATGGAGAAGATCGTGCTGCTGCTGGCTATCGT



 


GTCCCTGGTGAAGTCCGACCAGATCTGCATCGGTTACCACGCTAACAACT


 


CCACCGAGCAGGTGGACACCATCATGGAGAAGAACGTCACCGTGACCCAC


 


GCTCAGGACATCCTCGAAAAGACCCACAACGGCAAGCTGTGCGACCTGGA


 


CGGTGTCAAGCCCCTGATCCTGCGTGACTGCTCCGTGGCTGGTTGGCTGC


 


TGGGTAACCCCATGTGCGACGAGTTCATCAACGTGCCCGAGTGGTCCTAC


 


ATCGTGGAGAAGGCTAACCCCACCAACGACCTGTGCTACCCCGGTTCCTT


 


CAACGACTACGAGGAGCTGAAGCACCTGCTGTCCCGTATCAACCACTTCG


 


AGAAGATCCAGATCATCCCCAAGTCCTCTTGGTCCGACCACGAGGCTTCC


 


TCCGGTGTCTCCTCCGCTTGCCCCTACCTGGGTTCCCCCTCCTTCTTCCG


 


TAACGTGGTGTGGCTGATCAAGAAGAACTCCACCTACCCCACCATCAAGA


 


AGTCCTACAACAACACCAACCAGGAGGACCTGCTGGTCCTGTGGGGTATC


 


CACCACCCCAACGACGCTGCCGAGCAGACCCGTCTGTACCAGAACCCCAC


 


CACCTACATCTCCATCGGCACCTCCACCCTGAACCAGCGTCTGGTGCCCA


 


AGATCGCTACCCGTTCCAAGGTGAACGGCCAGTCCGGTCGTATGGAGTTC


 


TTCTGGACCATCCTGAAGCCTAACGACGCTATCAACTTCGAGTCCAACGG


 


CAACTTCATCGCTCCCGAGTACGCTTACAAGATCGTGAAGAAGGGCGACT


 


CCGCTATCATGAAGTCCGAGCTGGAGTACGGTAACTGCAACACCAAGTGC


 


CAGACCCCCATGGGTGCTATCAACTCCTCCATGCCCTTCCACAACATCCA


 


CCCCCTGACCATCGGCGAGTGCCCCAAGTACGTGAAGTCCAACCGTCTGG


 


TGCTGGCTACCGGTCTGCGTAACTCCCCCCAGCGCGAGTCCCGTCGTAAG


 


AAGCGTGGTCTGTTCGGCGCTATCGCTGGTTTCATCGAGGGCGGTTGGCA


 


GGGCATGGTGGACGGATGGTACGGTTACCACCACTCTAACGAGCAGGGTT


 


CCGGTTACGCTGCTGACAAGGAGTCCACCCAGAAGGCTATCGACGGCGTC


 


ACCAACAAGGTGAACTCCATCATCGACAAGATGAACACCCAGTTCGAGGC


 


TGTGGGTCGTGAGTTCAACAACCTCGAGCGTCGTATCGAGAACCTGAACA


 


AGAAGATGGAGGACGGTTTCCTGGACGTGTGGACCTACAACGCCGAGCTG


 


CTGGTGCTGATGGAGAACGAGCGTACCCTGGACTTCCACGACTCCAACGT


 


GAAGAACCTGTACGACAAGGTCCGCCTGCAGCTGCGTGACAACGCTAAGG


 


AGCTGGGTAACGGTTGCTTCGAGTTCTACCACAAGTGCGACAACGAGTGC


 


ATGGAGTCCATCCGTAACGGCACCTACAACTACCCCCAGTACTCCGAGGA


 


GGCTCGTCTGAAGCGTGAGGAGATCTCCGGCGTGAAGCTCGAGTCCATCG


 


GAACCTACCAGATCCTGTCCATCTACTCCACCGTGGCTTCCTCCCTGGCT


 


CTGGCTATCATGATGGCTGGTCTGTCCCTGTGGATGTGCTCCAACGGTTC


 


CCTGCAGTGCCGTATCTGCATCTAATGAAAGCTTGAGCTC















A/INDONESIA HA Protein Sequence (SEQ ID 43)



MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV


 



TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN


 



PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL


 



LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF


 



RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA


 



AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG


 



RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI


 



MKSELEYGNC NTKCQTPMGA INSSMPFHNI HPLTIGECPK


 



YVKSNRLVLA TGLRNSPQRE SRRKKRGLFG AIAGFIEGGW


 



QGMVDGWYGY HHSNEQGSGY AADKESTQKA IDGVTNKVNS


 



IIDKMNTQFE AVGREFNNLE RRIENLNKKM EDGFLDVWTY


 



NAELLVLMEN ERTLDEHDSN VKNLYDKVRL QLRDNAKELG


 



NGCFEFYHKC DNECMESIRN GTYNYPQYSE EARLKREEIS


 



GVKLESIGTY QILSIYSTVA SSLALAIMMA GLSLWMCSNG


 



SLQCRICI














A/INDONESIA Optimized HA (cleavage site deleted)



(Start and stop codon are underlined)








(SEQ ID 44)









GGATCCGCCACCATGGAGAAGATCGTGCTGCTGCTGGCTATCGTGTCCCT



 


GGTGAAGTCCGACCAGATCTGCATCGGTTACCACGCTAACAACTCCACCG


 


AGCAGGTGGACACCATCATGGAGAAGAACGTCACCGTGACCCACGCTCAG


 


GACATCCTCGAAAAGACCCACAACGGCAAGCTGTGCGACCTGGACGGTGT


 


CAAGCCCCTGATCCTGCGTGACTGCTCCGTGGCTGGTTGGCTGCTGGGTA


 


ACCCCATGTGCGACGAGTTCATCAACGTGCCCGAGTGGTCCTAGATCGTG


 


GAGAAGGCTAACCCCACCAACGACCTGTGCTACCCCGGTTCCTTCAACGA


 


CTACGAGGAGCTGAAGCACCTGCTGTCCCGTATCAACCACTTCGAGAAGA


 


TCCAGATCATCCCCAAGTCCTCTTGGTCCGACCACGAGGCTTCCTCCGGT


 


GTCTCCTCCGCTTGCCCCTACCTGGGTTCCCCCTCCTTCTTCCGTAACGT


 


GGTGTGGCTGATCAAGAAGAACTCCACCTACCCCACCATCAAGAAGTCCT


 


ACAACAACACCAACCAGGAGGACCTGCTGGTCCTGTGGGGTATCCACCAC


 


CCCAACGACGCTGCCGAGCAGACCCGTCTGTACCAGAACCCCACCACCTA


 


CATCTCCATCGGCACCTCCACCCTGAACCAGCGTCTGGTGCCCAAGATCG


 


CTACCCGTTCCAAGGTGAACGGCCAGTCCGGTCGTATGGAGTTCTTCTGG


 


ACCATCCTGAAGCCTAACGACGCTATCAACTTCGAGTCCAACGGCAACTT


 


CATCGCTCCCGAGTACGCTTACAAGATCGTGAAGAAGGGCGACTCCGCTA


 


TCATGAAGTCCGAGCTGGAGTACGGTAACTGCAACACCAAGTGCCAGACC


 


CCCATGGGTGCTATCAACTCCTCCATGCCCTTCCACAACATCCACCCCCT


 


GACCATCGGCGAGTGCCCCAAGTACGTGAAGTCCAACCGTCTGGTGCTGG


 


CTACCGGTCTGCGTAACTCCCCCCAGCGCGAGTCCCGTGGTCTGTTCGGC


 


GCTATCGCTGGTTTCATCGAGGGCGGTTGGCAGGGCATGGTGGACGGATG


 


GTACGGTTACCACCACTCTAACGAGCAGGGTTCCGGTTACGCTGCTGACA


 


AGGAGTCCACCCAGAAGGCTATCGACGGCGTCACCAACAAGGTGAACTCC


 


ATCATCGACAAGATGAACACCCAGTTCGAGGCTGTGGGTCGTGAGTTCAA


 


CAACCTCGAGCGTCGTATCGAGAACCTGAACAAGAAGATGGAGGACGGTT


 


TCCTGGACGTGTGGACCTACAACGCCGAGCTGCTGGTGCTGATGGAGAAC


 


GAGCGTACCCTGGACTTCCACGACTCCAACGTGAAGAACCTGTACGACAA


 


GGTCCGCCTGCAGCTGCGTGACAACGCTAAGGAGCTGGGTAACGGTTGCT


 


TCGAGTTCTACCACAAGTGCGACAACGAGTGCATGGAGTCCATCCGTAAC


 


GGCACCTACAACTACCCCCAGTACTCCGAGGAGGCTCGTCTGAAGCGTGA


 


GGAGATCTCCGGCGTGAAGCTCGAGTCCATCGGAACCTACCAGATCCTGT


 


CCATCTACTCCACCGTGGCTTCCTCCCTGGCTCTGGCTATCATGATGGCT


 


GGTCTGTCCCTGTGGATGTGCTCCAACGGTTCCCTGCAGTGCCGTATCTG


 


CATCTAATGA 
















A/INDONESIA HA Protein sequence









(SEQ ID 45)











MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV




 



TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN



 



PMCDEFINVP EWSYIVEKAN PTNDLCYPGS FNDYEELKHL



 



LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYLGSPSFF



 



RNVVWLIKKN STYPTIKKSY NNTNQEDLLV LWGIHHPNDA



 



AEQTRLYQNP TTYISIGTST LNQRLVPKIA TRSKVNGQSG



 



RMEFFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI



 



MKSELEYGNC NTKCQTPMGA INSSMFEHNI HPLTIGECPK



 



YVKSNRLVLA TGLRNSPQRE SRGLFGAIAG FIEGGWQGMV



 



DGWYGYHHSN EQGSGYAADK ESTQKAIDGV TNKVNSIIDK



 



MNTQFEAVGR EFNNLERRIE NLNKKMEDGF LDVWTYNAEL



 



LVLMENERTL DFHDSNVKNL YDKVRLQLRD NAKELGNGCF



 



EFYHKCDNEC MESIRNGTYN YPQYSEEARL KREEISGVKL



 



ESIGTYQILS IYSTVASSLA LAIMMAGLSL WMCSNGSLQC



 



RICI














A/INDONESIA Optimized NA



(Start and stop codon are underlined)








(SEQ ID 46)









GGTACCGGATCCGCCACCATGAACCCCAACCAGAAGATCATCACCATCGG



 


CTCCATCTGCATGGTGATCGGTATCGTGTCCCTGATGCTGCAGATCGGTA


 


ACATGATCTCCATCTGGGTGTCCCACTCCATCCAGACCGGTAACCAGCAC


 


CAGGCTGAGTCCATCTCCAACACCAACCCCCTGACCGAGAAGGCTGTGGC


 


TTCCGTGACCCTGGCTGGTAACTCCTCCCTGTGCCCCATCCGTGGTTGGG


 


CTGTGCACTCCAAGGACAACAACATCCGCATCGGTTCCAAGGGTGACGTG


 


TTCGTGATCCGTGAGCCCTTCATCTCCTGCTCCCACCTCGAGTGCCGTAC


 


CTTCTTCCTGACCCAAGGTGCTCTGCTGAACGACAAGCACTCCAACGGCA


 


CCGTGAAGGACCGTTCCCCCCACCGTACCCTGATGTCCTGCCCCGTGGGC


 


GAGGCTCCCTCCCCCTACAACTCCCGTTTCGAGTCCGTGGCTTGGTCCGC


 


TTCCGCTTGCCACGACGGCACCTCTTGGCTGACCATCGGTATCTCCGGTC


 


CCGACAACGAGGCTGTCGCTGTGCTGAAGTACAACGGCATCATCACCGAC


 


ACCATCAAGTCCTGGCGTAACAACATCCTGCGTACCCAGGAGTCCGAGTG


 


CGCTTGCGTGAACGGTTCCTGCTTCACCGTGATGACCGACGGTCCCTCCG


 


ACGGCCAGGCTTCCTACAAGATCTTCAAGATGGAGAAGGGCAAGGTGGTG


 


AAGTCCGTGGAGCTGGACGCTCCCAACTACCACTACGAGGAGTGCTCTTG


 


CTACCCCGACGCTGGCGAGATCACCTGCGTGTGCCGTGACAACTGGCACG


 


GTTCCAACCGTCCCTGGGTGTCCTTCAACCAGAACCTCGAGTACCAGATC


 


GGTTACATCTGCTCCGGCGTGTTCGGTGACAACCCCCGTCCCAACGACGG


 


AACCGGTTCCTGCGGTCCCATGTCCCCCAACGGTGCTTACGGTGTCAAGG


 


GCTTCTCCTTCAAGTACGGTAACGGTGTCTGGATCGGTCGTACCAAGTCC


 


ACCAACTCCCGCTCCGGTTTCGAGATGATCTGGGACCCCAACGGTTGGAC


 


CGGCACCGACTCTTCCTTCTCCGTGAAGCAGGACATCGTGGCTATCACCG


 


ACTGGTCCGGTTACTCCGGTTCCTTCGTGCAGCACCCCGAGCTGACCGGT


 


CTGGACTGCATTCGTCCCTGCTTCTGGGTGGAGCTGATCCGTGGTCGTCC


 


CAAGGAGTCCACCATCTGGACCTCCGGCTCCTCCATCTCTTTCTGCGGTG


 


TGAACTCCGACACCGTGTCCTGGTCCTGGCCCGACGGTGCCGAGCTGCCC


 


TTCACCATCGACAAGTAATGAAAGCTTGAGCTC
















A/INDONESIA NA Protein sequence









(SEQ ID 47)











MNPNQKIITI GSICMVIGIV SLMLQIGNMI SIWVSHSIQT




 



GNQHQAESIS NTNPLTEKAV ASVTLAGNSS LCPIRGWAVH



 



SKDNNIRIGS KGDVFVIREP FISCSHLECR TFFLTQGALL



 



NDKHSNGTVK DRSPHRTLMS CPVGEAPSPY NSRFESVAWS



 



ASACHDGTSW LTIGISGPDN EAVAVLKYNG IITDTIKSWR



 



NNILRTQESE CACVNGSCFT VMTDGPSDGQ ASYKIFKMEK



 



GKVVKSVELD APNYHYEECS CYPDAGEITC VCRDNWHGSN



 



RPWVSFNQNL EYQIGYICSG VFGDNPRPND GTGSCGPMSP



 



NGAYGVKGFS FKYGNGVWIG RTKSTNSRSG FEMIWDPNGW



 



TGTDSSFSVK QDIVAITDWS GYSGSFVQHP ELTGLDCIRP



 



CFWVELIRGR PKESTIWTSG SSISFCGVNS DTVSWSWPDG



 



AELPFTIDK















A/INDONESIA Optimized M1 








(SEQ ID 48)









GGTACC GCCACCATGTCCCTGCTGACCGAGGTGGAGACCTACGT



 


GCTGTCCATCATCCCCTCCGGTCCTCTGAAGGCTGAGATCGCTCAGAAGC


 


TCGAGGACGTTTTCGCTGGCAAGAACACCGACCTCGAGGCTCTGATGGAG


 


TGGCTCAAGACCCGTCCCATCCTGTCCCCCCTGACCAAGGGTATCCTGGG


 


TTTCGTGTTCACCCTGACCGTGCCCTCCGAGCGTGGTCTGCAGCGTCGTC


 


GTTTCGTGCAGAACGCTCTGAACGGTAACGGTGACCCCAACAACATGGAC


 


CGTGCTGTGAAGCTGTACAAGAAGCTGAAGCGCGAGATCACCTTCCACGG


 


TGCTAAGGAGGTGTCCCTGTCCTACTCCACCGGTGCTCTGGCTAGCTGCA


 


TGGGCCTGATCTACAACCGTATGGGCACCGTGACCACCGAGGTGGCCTTC


 


GGTCTGGTCTGCGCTACCTGCGAGCAGATCGCTGACTCCCAGCACCGTTC


 


CCACCGTCAGATGGCTACCATCACCAACCCCCTGATCCGTCACGAGAACC


 


GTATGGTGCTGGCTTCCACCACCGCTAAGGCTATGGAGCAGATGGCTGGT


 


TCCTCCGAGCAGGCTGCTGAGGCCATGGAGGTGGCCAACCAGGCTCGTCA


 


GATGGTGCAGGCTATGCGTACCATCGGCACCCACCCCAACTCCTCCGCTG


 


GTCTGCGTGACAACCTGCTCGAGAACCTGCAGGCTTACCAGAAGCGTATG


 


GGAGTCCAGATGCAGCGCTTCAAGTAATGA GAGCTC
















A/INDONESIA M1 Protein sequence









(SEQ ID 49)











MSLLTEVETY VLSIIPSGPL KAEIAQKLED VFAGKNTDLE




 



ALMEWLKTRP ILSPLTKGIL GFVFTLTVPS ERGLQRRRFV



 



QNALNGNGDP NNMDRAVKLY KKLKREITFH GAKEVSLSYS



 



TGALASCMGL IYNRMGTVTT EVAFGLVCAT CEQIADSQHR



 



SHRQMATITN PLIRHENRMV LASTTAKAME QMAGSSEQAA



 



EAMEVANQAR QMVQAMRTIG THPNSSAGLR DNLLENLQAY



 



QKRMGVQMQR FK














A/Anhui/1/2005



A/Anhui Optimized HA


(Start and stop codon are underlined)








(SEQ ID 50)









GGTACCGGATCCCTCGAGATGGAGAAGATCGTGCTGCTGCTGGCTATCGT



 


GTCCCTGGTGAAGTCCGACCAGATCTGCATCGGTTACCACGCTAACAACT


 


CCACCGAGCAGGTGGACACCATCATGGAGAAGAACGTCACCGTGACCCAC


 


GCTCAGGACATCCTGGAAAAGACCCACAACGGCAAGCTGTGCGACCTGGA


 


CGGTGTCAAGCCCCTGATCCTGCGTGACTGCTCCGTGGCTGGTTGGCTGC


 


TGGGTAACCCCATGTGCGACGAGTTCATCAACGTGCCCGAGTGGTCCTAC


 


ATCGTGGAGAAGGCTAACCCCGCTAACGACGTGTGCTACCCCGGTAACTT


 


CAACGACTACGAGGAGCTGAAGCACCTGCTGTCCCGTATCAACCACTTCG


 


AGAAGATCCAGATCATCCCCAAGTCCTCTTGGTCCGACCACGAGGCTTCC


 


TCCGGTGTCTCCTCCGCTTGCCCATACCAGGGCACCCCATCTTTCTTCCG


 


TAACGTGGTGTGGCTGATCAAGAAGAACAACACCTACCCCACCATCAAGC


 


GTTCCTACAACAACACCAACCAGGAGGACCTGCTGATCCTGTGGGGTATC


 


CACCACTCCAACGACGCTGCCGAGCAGACCAAGCTGTACCAGAACCCCAC


 


CACCTACATCTCCGTGGGCACCTCCACCCTGAACCAGCGTCTGGTGCCCA


 


AGATCGCTACCCGTTCCAAGGTGAACGGCCAGTCCGGTCGTATGGACTTC


 


TTCTGGACCATCCTGAAGCCTAACGACGCTATCAACTTCGAGTCCAACGG


 


CAACTTCATCGCTCCCGAGTACGCTTACAAGATCGTGAAGAAGGGCGACT


 


CCGCTATCGTCAAGTCCGAGGTGGAGTACGGTAACTGCAACACCAAGTGC


 


CAGACCCCCATCGGTGCTATCAACTCCTCCATGCCCTTCCACAACATCCA


 


CCCCCTGACCATCGGCGAGTGCCCCAAGTACGTGAAGTCCAACAAGCTGG


 


TGCTGGCTACCGGTCTGCGTAACTCCCCCCTGCGTGAGCGTGGTCTGTTC


 


GGCGCTATCGCTGGTTTCATCGAGGGCGGTTGGCAGGGCATGGTGGACGG


 


TTGGTACGGTTACCACCACAGCAACGAGCAGGGTTCCGGTTACGCTGCTG


 


ACAAGGAGTCCACCCAGAAGGCTATCGACGGCGTCACCAACAAGGTGAAC


 


TCCATCATCGACAAGATGAACACCCAGTTCGAGGCTGTGGGTCGTGAGTT


 


CAACAACCTGGAGCGTCGTATCGAGAACCTGAACAAGAAGATGGAGGACG


 


GTTTCCTGGACGTGTGGACCTACAACGCCGAGCTGCTGGTGCTGATGGAG


 


AACGAGCGTACCCTGGACTTCCACGACTCTAACGTGAAGAACCTGTACGA


 


CAAGGTCCGCCTGCAGCTGCGTGACAACGCTAAGGAGCTGGGTAACGGTT


 


GCTTCGAGTTCTACCACAAGTGCGACAACGAGTGCATGGAGTCCGTGCGT


 


AACGGCACCTACGACTACCCCCAGTACTCCGAGGAGGCTCGTCTGAAGCG


 


TGAGGAGATCTCCGGCGTGAAGCTGGAGTCCATCGGCACCTACCAGATCC


 


TGTCCATCTACTCCACCGTGGCTTCCTCCCTGGCTCTGGCTATCATGGTG


 


GCTGGTCTGTCCCTGTGGATGTGCTCCAACGGTTCCCTGCAGTGCCGTAT


 


CTGCATCTAATAATGA AAGCTTGAGCTC
















A/Anhui HA Protein sequence









(SEQ ID 51)











MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV




 



TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN



 



PMCDEFINVP EWSYIVEKAN PANDLCYPGN FNDYEELKHL



 



LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYQGTPSFF



 



RNVVWLIKKN NTYPTIKRSY NNTNQEDLLI LWGIHHSNDA



 



AEQTKLYQNP TTYISVGTST LNQRLVPKIA TRSKVNGQSG



 



RMDPFWTILK PNDAINFESN GNFIAPEYAY KIVKKGDSAI



 



VKSEVEYGNC NTKCQTPIGA INSSMPFHNI HPLTIGECPK



 



YVKSNKLVLA TGLRNSPLRE RGLFGAIAGF IEGGWQGMVD



 



GWYGYHHSNE QGSGYAADKE STQKAIDGVT NKVNSIIDKM



 



NTQFEAVGRE PNNLERRIEN LNKKMEDGFL DVWTYNAELL



 



VLMENERTLD FHDSNVKNLY DKVRLQLRDN AKELGNGCFE



 



FYHKCDNECM ESVRNGTYDY PQYSEEARLK REEISGVKLE



 



SIGTYQILSI YSTVASSLAL AIMVAGLSLW MCSNGSLQCR



 



ICI














A/Bar headed goose/Qinghai/1A/2005



A/Qinghai Optimized HA


(Start and stop codon are underlined)








(SEQ ID 52)









CGGGCGCGGAGCGGCCGCATGGAGAAGATCGTGCTGCTGCTGGCTATCGT



 


GTCTCTGGTCAAGTCCGACCAGATCTGCATCGGTTACCACGCTAACAACT


 


CCACCGAGCAGGTGGACACCATCATGGAGAAGAACGTCACCGTGACCCAC


 


GCTCAGGACATCCTCGAAAAGACCCACAACGGCAAGCTGTGCGACCTGGA


 


CGGCGTGAAGCCCCTGATCCTGCGTGACTGCTCCGTGGCTGGTTGGCTGC


 


TGGGTAACCCCATGTGCGACGAGTTCCTCAACGTGCCCGAGTGGTCCTAC


 


ATCGTGGAGAAGATCAACCCCGCTAACGACCTGTGCTACCCCGGTAACTT


 


CAACGACTACGAGGAGCTGAAGCACCTGCTGTCCCGTATCAACCACTTCG


 


AGAAGATCCAGATCATCCCCAAGTCCTCTTGGTCCGACCACGAGGCTTCC


 


TCCGGTGTCTCCTCCGCTTGCCCATACCAGGGCCGTTCTTCCTTCTTCCG


 


CAACGTGGTGTGGCTGATCAAGAAGAACAACGCCTACCCCACCATCAAGC


 


GTTCCTACAACAACACCAACCAGGAGGACCTGCTGGTCCTGTGGGGTATC


 


CACCACCCCAACGACGCTGCCGAGCAGACCCGTCTGTACCAGAACCCCAC


 


CACCTACATCTCCGTGGGCACCTCTACCCTGAACCAGCGTCTGGTGCCCA


 


AGATCGCTACCCGTTCCAAGGTGAACGGCCAGTCCGGTCGTATGGAGTTG


 


TTCTGGACCATCCTGAAGCCTAACGACGCTATCAACTTCGAGTCCAACGG


 


CAACTTCATCGGTCCCGAGAACGCTTACAAGATCGTGAAGAAGGGCGACT


 


CCACCATCATGAAGTCCGAGCTGGAGTACGGCAACTGCAACACTAAGTGC


 


CAGACCCCCATCGGTGCTATCAACTCCTCCATGCCCTTCCACAACATCCA


 


CCCCCTGACTATCGGCGAGTGCCCCAAGTACGTGAAGTCCAACCGTCTGG


 


TGCTGGCTACCGGTCTGCGTAACTCCCCCCAGATCGAGACTCGTGGTCTG


 


TTCGGCGCTATCGCTGGTTTCATCGAGGGCGGTTGGCAGGGCATGGTGGA


 


CGGTTGGTACGGTTACCACCACTCTAACGAGCAGGGTTCCGGTTACGCTG


 


CTGACAAGGAGTCTACCCAGAAGGCTATCGACGGCGTCACCAACAAGGTG


 


AACTCCATCATCGACAAGATGAACACCCAGTTCGAGGCTGTGGGTCGTGA


 


GTTCAACAACCTCGAACGTCGTATCGAGAACCTGAACAAGAAGATGGAGG


 


ACGGTTTCCTGGACGTGTGGACCTACAACGCCGAGCTGCTGGTGCTGATG


 


GAGAACGAGCGTACCCTGGACTTCGACGACTCCAACGTGAAGAACCTGTA


 


CGACAAGGTCCGCCTGCAGCTGCGTGACAACGCTAAGGAGCTGGGTAACG


 


GTTGCTTCGAGTTCTACCACCGTTGCGACAACGAGTGCATGGAGTCCGTG


 


CGTAACGGCACCTACGACTACCCCCAGTACTCCGAGGAGGCTCGTCTGAA


 


GCGTGAGGAGATCTCCGGTGTGAAGGTCGAATCCATGGGAAGCTACCAGA


 


TCCTGTGCATCTACTCCACCGTGGCTTGCTCCCTGGCTCTGGCTATCATG


 


GTGGCTGGTCTGTCGGTGTGGATGTGCTGCAACGGTTCCCTGCAGTGCCG


 


TATCTGGATCTAATAATGAGGCGCGCCAAGCTTGTCGA
















A/Qinghai HA Protein sequence









(SEQ ID 53)











MEKIVLLLAI VSLVKSDQIC IGYHANNSTE QVDTIMEKNV




 



TVTHAQDILE KTHNGKLCDL DGVKPLILRD CSVAGWLLGN



 



PMCDEFLNVP EWSYIVEKIN PANDLCYPGN FNDYEELKHL



 



LSRINHFEKI QIIPKSSWSD HEASSGVSSA CPYQGRSSFF



 



RNVVWLIKKN NAYPTIKRSY NNTNQEDLLV LWGIHHPNDA



 



AEQTRLYQNP TTYISVGTST LNQRLVPKIA TRSKVNGQSG



 



RMEFFWTILK PNDAINFESN GNFIAPENAY KIVKKGDSTI



 



MKSELEYGNC NTKCQTPIGA INSSMPFHNI HPLTIGECPK



 



YVKSNRLVLA TGLRNSPQIE TRGLFGAIAG FIEGGWQGMV



 



DGWYGYHHSN EQGSGYAADK ESTQKAIDGV TNKVNSIIDK



 



MNTQFEAVGR EFNNLERRIE NLNKKMEDGF LDVWTYNAEL



 



LVLMENERTL DFHDSNVKNL YDKVRLQLRD NAKELGNGCF



 



EFYHRCDNEC MESVRNGTYD YPQYSEEARL KREEISGVKL



 



ESIGTYQILS IYSTVASSLA LAIMVAGLSL WMCSNGSLQC



 



RICI














A/Qinghai Optimized NA



(Start and stop codon are underlined)








(SEQ ID 54)









ACCGTCCCACCATCGGGCGCGGATCC ATGAACCCCAACCAGAA



 


GATCATCACCATCGGCTCCATCTGCATGGTGATCGGTATCGTGTCCCTGA


 


TGCTGCAGATCGGTAACATGATCTCCATCTGGGTGTCCCACTCCATCCAG


 


ACCGGTAACCAGCGTCAGGCCGAGCCCATCTCCAACACCAAGTTCCTCAC


 


CGAGAAGGCTGTGGCTTCCGTGACCCTGGCTGGTAACTCCTCCCTGTGCC


 


CCATCTCCGGTTGGGCTGTGTACTCCAAGGACAACTCCATCCGTATCGGT


 


TCCCGTGGTGACGTGTTCGTGATCCGTGAGCCCTTCATCTCCTGCTCCCA


 


CCTCGAATGCCGTACCTTCTTCCTGACCCAGGGTGCTCTGCTGAACGACA


 


AGCACTCCAACGGCACCGTGAAGGACCGTTCCCCCCACCGTACCCTGATG


 


TCCTGCCCCGTGGGCGAGGCTCCCTCCCCCTACAACTCCCGTTTCGAGTC


 


CGTGGCTTGGTCCGCTTCCGCTTGCCACGACGGCACCTCTTGGCTGACCA


 


TCGGTATCTCCGGTCCCGACAACGGTGCTGTGGCTGTGCTGAAGTACAAC


 


GGCATCATCACCGACACCATCAAGTCCTGGCGTAACAACATCCTGCGTAC


 


CCAAGAGTCCGAGTGCGCTTGCGTGAACGGTTCCTGCTTCACCGTGATGA


 


CCGACGGTCCCTCCAACGGCCAGGCTTCCTACAAGATCTTCAAGATGGAG


 


AAGGGCAAGGTGGTGAAGTCCGTGGAGCTGGACGCTCCCAACTACCACTA


 


CGAGGAGTGCTCTTGCTACCCCGACGCTGGCGAGATCACCTGCGTGTGCC


 


GTGACAACTGGCACGGTTCCAACCGTCCCTGGGTGTCCTTCAACCAGAAC


 


CTCGAATACCAGATCGGTTACATCTGCTCCGGCGTGTTCGGTGACAACCC


 


CCGTCCCAACGACGGAACCGGTTCCTGCGGTCCCGTGTCCCCCAACGGTG


 


CTTACGGTGTCAAGGGCTTCTCCTTCAAGTACGGTAACGGTGTCTGGATC


 


GGTCGTACCAAGTCCACCAACTCCCGCTCCGGTTTCGAGATGATCTGGGA


 


CCCCAACGGTTGGACCGGCACCGACTCTTCCTTCTCCGTGAAGCAGGACA


 


TCGTGGCTATCACCGACTGGTCCGGTTACTCCGGTTCCTTCGTGCAGCAC


 


CCCGAGCTGACCGGTCTGGACTGTATCCGTCCCTGCTTCTGGGTGGAGCT


 


GATCCGTGGTCGTCCCAAGGAGTCCACCATCTGGACCTCCGGCTCCTCCA


 


TCTCTTTCTGCGGTGTGAACTCCGACACCGTGTCCTGGTCCTGGCCCGAC


 


GGTGCCGAGCTGCCCTTCACCATCGACAAGTAATAATGA 


 


TTGTCGAGAAGTACTAGAGGATCATAAT
















A/Qinghai NA Protein sequence









(SEQ ID 55)











MNPNQKIITI GSICMVIGIV SLMLQIGNMI SIWVSHSIQT




 



GNQRQAEPIS NTKFLTEKAV ASVTLAGNSS LCPISGWAVY



 



SKDNSIRIGS RGDVFVIREP FISCSHLECR TFFLTQGALL



 



NDKHSNGTVK DRSPHRTLMS CPVGEAPSPY NSRFESVAWS



 



ASACHDGTSW LTIGISGPDN GAVAVLKYNG IITDTIKSWR



 



NNILRTQESE CACVNGSCFT VMTDGPSNGQ ASYKIFKMEK



 



GKVVKSVELD APNYHYEECS CYPDAGEITC VCRDNWHGSN



 



RPWVSFNQNL EYQIGYICSG VFGDNPRPND GTGSCGPVSP



 



NGAYGVKGFS FKYGNGVWIG RTKSTNSRSG FEMIWDPNGW



 



TGTDSSFSVK QDIVAITDWS GYSGSFVQHP ELTGLDCIRP



 



CFWVELIRGR PKESTIWTSG SSISFCGVNS DTVSWSWPDG



 



AELPFTIDK






The following references are incorporated herein by reference:

    Berglund, P., Fleeton, M. N., Smerdou, C., and Liljestrom, P. (1999). Immunization with recombinant Semliki Forest virus induces protection against influenza challenge in mice. Vaccine 17, 497-507.
    Cox, J. C., and Coulter, A. R. (1997). Adjuvants—a classification and review of their modes of action. Vaccine 15, 248-256.
    Crawford, J., Wilkinson, B., Vosnesensky, A., Smith, G., Garcia, M., Stone, H., and Perdue, M. L. (1999). Baculovirus-derived hemagglutinin vaccines protect against lethal influenza infections by avian H5 and H7 subtypes. Vaccine 17, 2265-2274.
    Crowther R A, Kiselev N A, Bottcher B, Berriman J A, Borisova G P, Ose V, Pumpens P. (1994). Three-dimensional structure of hepatitis B virus core particles determined by electron cryomicroscopy. Cell 17, 943-50.
    Gomez-Puertas, P., Mena, I., Castillo, M., Vivo, A., Perez-Pastrana, E., and Portela, A. (1999). Efficient formation of influenza virus-like particles: dependence on the expression levels of viral proteins. J. Gen. Virol. 80, 1635-1645.
    Johansson, B. E. (1999). Immunization with influenza A virus hemagglutinin and neuraminidase produced in recombinant baculovirus results in a balanced and broadened immune response superior to conventional vaccine. Vaccine 17, 2073-2080.
    Lakey, D. L., Treanor, J. J., Betts, B. F., Smith, G. E., Thompson, J., Sannella, E., Reed, G., Wilkinson, B. E., and Wright, P. E. (1996) Recombinant baculovirus influenza A hemagglutinin vaccines are well tolerated and immunogenic in healthy adults. J. Infect. Dis. 174, 838-841.
    Latham, T., and Galarza, J. M. (2001). Formation of wild-type and chimeric influenza virus-like particles following simultaneous expression of only four structural proteins. J. Virol. 75, 6154-6165.
    Mena, I., Vivo, A., Perez, E., and Portela, A (1996). Rescue of a synthetic chloramphenicol acetyltransferase RNA into influenza-like particles obtained from recombinant plasmids. J. Virol. 70, 5016-5024.
    Murphy, B. R., and Webster, R. G. (1996). Orthomyxoviruses. In “Virology” (D. M. K. B. N. Fields, P. M. Howley, Eds.) Vol. 1, pp. 1397-1445. Lippincott-Raven, Philadelphia.
    Neumann, G., Watanabe, T., and Kawaoka, Y. (2000). Plasmid-driven formation of influenza virus-like particles. J. Virol. 74, 547-551.
    Olsen, C. W., McGregor, M. W., Dybdahl-Sissoko, N., Schram, B. R., Nelson, K. M., Lunn, D. P., Macklin, M. D., and Swain, W. F. (1997). Immunogenicity and efficacy of baculovirus-expressed and DNA-based equine influenza virus hemagglutinin vaccines in mice. Vaccine 15, 1149-1156.
    Peiris, J. S., Guan, Y., Markwell, D., Ghose, P., Webster, R. G., and Shortridge, K. F. (2001). Cocirculation of avian H9N2 and contemporary “human” H3N2 influenza A viruses in pigs in southwestern China: potential for genetic reassortment? J. Virol. 75, 9679-9686.
    Pumpens, P., and Grens, E. (2003). Artificial genes for chimeric virus-like particles. In: “Artificial DNA” (Khudyakov, Y. E, and Fields, H. A., Eds.) pp. 249-327. CRC Press, New York.
    Pushko, P., Parker, M., Ludwig, G. V., Davis, N. L., Johnston, R. E., and Smith, J. F. (1997). Replicon-helper systems from attenuated Venezuelan equine encephalitis virus: expression of heterologous genes in vitro and immunization against heterologous pathogens in vivo. Virology 239, 389-401.
    Slepushkin, V. A., Katz, J. M., Black, R. A., Gamble, W. C., Rota, P. A., and Cox, N. J. (1995). Protection of mice against influenza A virus challenged by vaccination with baculovirus-expressed M2 protein. Vaccine 13, 1399-1402.
    Treanor, J. J., Betts, R. F., Smith, G. E., Anderson, E. L., Hackett, C. S., Wilkinson, B. E., Belshe, R. B., and Powers, D. C. (1996). Evaluation of a recombinant hemagglutinin expressed in insect cells as an influenza vaccine in young and elderly adults. J. Infect. Dis. 173, 1467-1470.
    Tsuji, M., et al. (1998). Recombinant Sindbis viruses expressing a cytotoxic T-lymphocyte epitope of a malaria parasite or of influenza virus elicit protection against the corresponding pathogen in mice. J. Virol. 72, 6907-6910.
    Ulmer, J. B., et al. (1993). Heterologous protection against influenza by injection of DNA encoding a viral protein. Science 259, 1745-1749.
    Ulmer, J. B., et al. (1998). Protective CD4+ and CD8+ T cells against influenza virus induced by vaccination with nucleoprotein DNA. J. Virol. 72, 5648-5653.
    Watanabe, T., Watanabe, S., Neumann, G., and Kawaoka, Y. (2002) Immunogenicity and protective efficacy of replication-incompetent influenza virus-like particles. J. Virol. 76, 767-773.
    Zhou, X., et al. (1995). Generation of cytotoxic and humoral immune responses by non-replicative recombinant Semliki Forest virus. Proc. Natl. Acad. Sci. USA 92, 3009-3013.


Other Embodiments
Those skilled in the art will recognize, or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are intended to be encompassed by the following claims:

## Claims

1. A method of inducing substantial immunity to an influenza virus infection in a human susceptible to influenza, comprising administering to said human at least one effective dose of a vaccine, said vaccine comprising an influenza VLP, wherein said VLP comprises influenza M1, HA and NA proteins, and wherein said M1 protein is derived from A/Indonesia/5/05.

2. The method of claim 1, wherein said HA and/or NA exhibits hemagglutinin activity and/or neuraminidase activity, respectively.

3. The method of claim 1, wherein said method comprises administering to a human said vaccine orally, intradermally, intranasally, intramuscularly, intraperitoneally, intravenously, or subcutaneously.

4. The method of claim 1, wherein said influenza VLP comprises seasonal influenza virus HA and NA proteins.

5. The method of claim 4, wherein said seasonal influenza virus is a type A influenza virus.

6. The method of claim 4, wherein said seasonal influenza virus is a type B influenza virus.

7. The method of claim 1, wherein said influenza VLP comprises avian influenza virus HA and NA proteins.

8. The method of claim 7, wherein said avian influenza virus HA and NA proteins are derived from H5N1.

9. The method of claim 7, wherein said avian influenza virus HA and NA proteins are derived from H9N2.

10. The method of claim 1, wherein said M1 protein is derived from a different influenza virus strain as compared to the HA and NA proteins.

11. The method of claim 1, wherein said vaccine further comprises an adjuvant or immune stimulator.