# Patent

## Title
Pyrrolo[2,3-d]pyrimidine compounds as inhibitors of protein kinases

## Abstract

The present invention relates to certain pyrrolopyrimidine derivatives, pharmaceutical compositions containing them, and methods of using them, including methods for the treatment of proliferation disorders and other diseases related to the dysregulation of kinase (such as, but not limited to, EGFR (including HER), Alk, PDGFR, BLK, BMX/ETK, BTK, FLT3(D835Y), ITK, JAK1, JAK2, JAK3, TEC and TXK) and/or the respective pathways.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a U.S. National Phase Application of International Application No. PCTUS2013/050163, filed Jul. 11, 2013 which claims benefit of priority to U.S. Provisional Application No. 61/680,231, filed Aug. 6, 2012, entitled “NOVEL EGFR MODULATORS AND USES THEREOF,” U.S. Provisional Application No. 61/814,147, filed Apr. 19, 2013, entitled “NOVEL PYRROLOPYRIMIDINE COMPOUNDS AS INHIBITORS OF PROTEIN KINASES,” U.S. patent application Ser. No. 13/843,554, filed Mar. 15, 2013, entitled “NOVEL EGFR MODULATORS AND USES THEREOF,” and U.S. patent application Ser. No. 13/917,514, filed Jun. 13, 2013, entitled “NOVEL EGFR MODULATORS AND USES THEREOF.” This application, in certain aspects, relates to U.S. Provisional Application No. 61/586,718, filed Jan. 13, 2012, entitled “HETEROCYCLIC COMPOUNDS AND USES AS ANTICANCER AGENTS,” and to U.S. patent application Ser. No. 13/740,182, filed Jan. 12, 2013, entitled “HETEROCYCLIC COMPOUNDS AND USES AS ANTICANCER AGENTS.” The contents of the above referenced applications are herein incorporated by reference in their entireties.


TECHNICAL FIELD
The field of this invention is pharmaceutical compounds, compositions and methods, especially as they are related to compositions and methods for the treatment of proliferation disorders and other diseases related to the dysregulation of kinase (such as, but not limited to, EGFR (including HER), Alk, PDGFR, BLK, BMX/ETK, BTK, FLT3(D835Y), ITK, JAK1, JAK2, JAK3, TEC and TXK) and/or the respective pathways.
BACKGROUND ART
Protein kinases are a group of enzymes that regulate diverse, important biological processes including cell growth, proliferation, survival, invasion and differentiation, organ formation, tissue repair and regeneration, etc. Protein kinases exert their physiological functions through catalyzing the phosphorylation of protein and thereby modulating the cellular activities. Because protein kinases have profound effects on cells, their activities are highly regulated. Kinases are turned on or off by phosphorylation (sometimes by autophosphorylation), by binding of activator proteins or inhibitor proteins, or small molecules, or by controlling their location in the cell relative to their substrates. Dysfunctions in the activities of kinases, arising from genetic abnormalities or environmental factors, are known to be associated with many diseases. Several severe pathological states, including cancer and chronic inflammation, are associated with stimulation of intra-cellular signaling, and since kinases positively relay signaling events, their inhibition offers a powerful way to inhibit or control signal transduction cascades.
The epidermal growth factor receptor (EGFR; ErbB-1; HER1 in humans) is a member of the ErbB family of receptors, a subfamily of four closely related receptor tyrosine kinases: EGFR (ErbB-1), HER2/c-neu (ErbB-2), Her 3 (ErbB-3) and Her 4 (ErbB-4). EGFR is the cell-surface receptor for members of the epidermal growth factor family (EGF-family) of extracellular protein ligands. Mutations affecting EGFR expression or activity could result in cancer. EGFR is reported deregulated in most solid tumor types i.e. lung cancer, breast cancer and brain tumor. It is estimated that mutations, amplifications or misregulations of EGFR or family members are implicated in about 30% of all epithelial cancers. Therapeutic approaches have been developed based on the inhibition of EGFR by either antibody drug or small molecular inhibitor drug, such as gefitinib and erlotinib. In the case of non-small cell lung cancer, gefitinib and erlotinib have shown benefit for about 10-40% of the patients. However, acquired resistant to gefitinib or erlotinib after a period of treatment become a major clinical problem. Research has confirmed that one main reason resistance developed is due to the presence of a new mutation of T790M, which is the gatekeeper of EGFR. Subsequently, inhibitors can overcome this T790M have been developed and showed advantage in the clinical trial, such as BIBW2992. However, these T790M targeted EGFR inhibitor still has relative inhibitory activity towards wild type EGFR which limit the clinical application. It is needed to further develop more efficient type of EGFR inhibitor which will target substantially the mutation and not substantially the wild type protein.
Other protein kinases that are useful targets for small molecule pharmaceuticals include B lymphoid tyrosine kinase (BLK), janus kinase 1 (JAK1), bone marrow kinase on the X chromosome (BMX/ETK), Bruton's tyrosine kinase (BTK), janus kinase 2 (JAK2), janus kinase 3 (JAK3), tyrosine kinase expressed in hepatocellular carcinoma (TEC), resting lymphocyte kinase (TXK, also known as RLK), FMS-like tyrosine kinase 3 (FLT3), and FLT3 (D835Y).
SUMMARY
The present invention is directed to certain pyrrolopyrimidine derivatives, pharmaceutical compositions, and methods of using these compounds and compositions to treat proliferation and other disorders.
The present disclosure provides a compound of Formula (VIII):




wherein
X1 is O, NH, S, CH2, or CF2;
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl;
R13 is selected from hydrogen, C1-6 alkyl, C1-6 acyl, SO2—C1-6alkyl, C3-7 cycloalkyl, and C6-20 aryl,

    
    
        wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo; and
        —NR18R19 is
    
    






    
    
        wherein R10 is selected from hydrogen and C1-6 alkyl;
        R15 is unsubstituted methyl, or is C2-4alkyl unsubstituted or substituted with hydroxy, methoxy, or halo; and
        m is 1 or 2;
    
    


or R19 and R9 taken together form a 5- or 6-membered heteroaryl ring optionally substituted with C1-6alkyl that is unsubstituted or substituted with amino, hydroxyl, or halo; and R18 is hydrogen or C1-6alkyl, or is absent to satisfy valency of the heteroaryl ring;
provided that neither of R6 or R7 is methoxy when —NR18R19 is




or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula (Ia) and (Ib):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
a is one or two;
Ring A is an aromatic ring;
R20 and R21 are independently selected from hydrogen and C1-6 alkyl; wherein alkyl is unsubstituted or substituted with amino, hydroxyl, or halo; wherein R21 may not present to satisfy valency;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, C1-6 acyl, SO2—C1-6alkyl, C3-7 cycloalkyl, and C6-20 aryl,

    
    
        wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
    
    


or a pharmaceutically acceptable salt thereof.
The present disclosure provides a compound of Formula (II):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
The present disclosure provides a compound of Formula (III):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
The present disclosure provides a compound of Formula (IV):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
The present disclosure provides a compound of Formula (V):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
The present disclosure provides a compound of Formula (VI):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In certain embodiments, the present disclosure provides a compound of Formula (VII) as described below.
In certain embodiments, the compound of Formula (I)-(VIII) is a compound selected from those species described or exemplified in the detailed description below.
In a further aspect, the present disclosure provides a pharmaceutical composition comprising at least one compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof. Pharmaceutical compositions may further comprise a pharmaceutically acceptable carrier or excipient. The present disclosure also provides a compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof for use as a medicament.
In another aspect, the present disclosure provides a method of treating and/or preventing a proliferation disorder comprising administering to a subject in need of such treatment an effective amount of at least one compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof.
In another aspect, the present disclosure provides a compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof for use in therapy. In another aspect, the present disclosure provides a compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof for use in the treatment of a proliferation disorder. In another aspect, the present disclosure provides use of a compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof for the manufacture of a medicament for the treatment of a proliferation disorder.
In another aspect, the present disclosure provides a method of treating a condition associated with EGFR inhibitory activity targeting a mutated EGFR but not the wild type EGFR comprising administering to a subject in need of such treatment an effective amount of at least one compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof. In some embodiments, the mutated EGFR comprises a T790M mutation. The present disclosure provides use of a compound of Formula (I)-(VIII) in the preparation of a medicament for the treatment of such diseases and medical conditions, and the use of such compounds and salts for treatment of such diseases and medical conditions.
In another aspect, the present disclosure provides a method of inhibiting mutated EGFR in a cell comprising contacting the cell with an effective amount of at least one compound of Formula (I)-(VIII) or a salt thereof, and/or with at least one pharmaceutical composition of the embodiments, wherein the contacting is in vitro, ex vivo, or in vivo. In some embodiments, the mutated EGFR comprises a T790M mutation.
In another aspect, the present disclosure provides a method of treating a disease or medical condition associated with kinase inhibitory activity comprising administering to a subject in need of such treatment an effective amount of at least one compound of Formula (I)-(VIII) or a pharmaceutically acceptable salt thereof, wherein the kinase is selected from the group consisting of EGFR, EGFR (T790M), BLK, BMX/ETK, BTK, JAK2, JAK3, TEC, TXK, FLT3, and FLT3 (D835Y). The present disclosure provides for use of a compound of Formula (I)-(VIII) in the preparation of a medicament for the treatment of such diseases and medical conditions, and the use of such compounds and salts for treatment of such diseases and medical conditions. In another aspect, the present disclosure provides a method of inhibiting a mutated kinase in a cell comprising contacting the cell with an effective amount of at least one compound of Formula (I)-(VIII) or a salt thereof, and/or with at least one pharmaceutical composition of the embodiments, wherein the contacting is in vitro, ex vivo, or in vivo. In some embodiments, the mutated kinase is FLT3 with a D835Y mutation.
One of ordinary skill in the art will recognize that compounds of Formula (II)-(VI) are compounds of Formula (I), and that compounds of Formula (I)-(VII) are compounds of Formula (VIII).
Additional embodiments, features, and advantages of the invention will be apparent from the following detailed description and through practice of the invention.
For the sake of brevity, the disclosures of the publications cited in this specification, including patents, are herein incorporated by reference.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows SDS-PAGE of certain effectors of H1975 lung cancer cells treated with varying concentrations of Compound 3.
FIG. 2 shows immunoblots of certain effectors in tumors treated with Compound 3 at various time intervals.
FIG. 3 shows a chart of mouse body weight changes in the different groups in NCI-H1975 model.
FIG. 4 shows a chart of mouse body weight changes in the different groups in HCC827 model.
FIG. 5 shows a chart of mouse body weight changes in the different groups in A431 model.
FIG. 6 shows a chart of the tumor volume of mice in the different groups in NCI-H1975 model.
FIG. 7 shows a chart of the tumor volume of mice in the different groups in HCC827 model.
FIG. 8 shows a chart of the tumor volume of mice in the different groups in A431 model.
FIGS. 9A-9F show SDS-PAGE (9A, 9C, 9E) and inhibition graphs (9B, 9D, 9F) of EGFR-Tyr1068 phosphorylation and downstream signaling in H1975 lung cancer cells treated with varying concentrations of Compound 3 (9A, 9B), Gefitinib (9C, 9D), and WZ4002 (9E, 9F).
FIGS. 10A-10F show SDS-PAGE (10A, 10C, 10E) and inhibition graphs (10B, 10D, 10F) of EGFR-Tyr1068 phosphorylation and downstream signaling in HCC-827 EGFR mutant cells treated with varying concentrations of Compound 3 (10A, 10B), Gefitinib (10C, 10D), and WZ4002 (10E, 10F).
FIGS. 11A-11F show SDS-PAGE (11A, 11C, 11E) and inhibition graphs (11B, 11D, 11F) of EGFR-Tyr1068 phosphorylation and downstream signaling in A431 cells expressing WT EGFR that were treated with varying concentrations of Compound 3 (11A, 11B), Gefitinib (11C, 11D), and WZ4002 (11E, 11F).
FIG. 12 shows the inhibition of phosphorylation of EGFR in H1975 tumor tissues when treated with a single dose of Compound 3 at 12.5, 50, and 200 mg/kg.
FIG. 13 shows the inhibition of phosphorylation of EGFR in H1975 tumor tissues when treated with eight doses of Compound 3 at 12.5 and 50 mg/kg, as compared to Gefitinib at 100 mg/kg.
FIG. 14 shows the results of a cell-based pulse-chase assay that demonstrate that Compound 3 is an irreversible inhibitor of proliferation of H1975 cells with the EGFR T790M mutation.
FIG. 15A shows the IC50 titration curve for Compound 3 against BLK.
FIG. 15B shows the IC50 titration curve for staurosporine against BLK
FIG. 16 shows the IC50 titration curve for Compound 3 against BMX/ETK.
FIG. 17 shows the IC50 titration curve for Compound 3 against BTK.
FIG. 18 shows the IC50 titration curve for Compound 3 against FLT3 (D835Y).
FIG. 19 shows the IC50 titration curve for Compound 3 against ITK.
FIG. 20 shows the IC50 titration curve for Compound 3 against JAK2.
FIG. 21 shows the IC50 titration curve for Compound 3 against JAK3.
FIG. 22 shows the IC50 titration curve for Compound 3 against TEC.
FIG. 23 shows the IC50 titration curve for Compound 3 against TXK.



DETAILED DESCRIPTION
The present invention is directed to certain pyrrolopyrimidine derivatives, pharmaceutical compositions, and methods of using these compounds and compositions to treat proliferation disorders. The compounds as described herein exhibit anti-tumor, anticancer, anti-inflammation, anti-infectious, and anti-proliferation activity. In some embodiments, the compounds have been shown to possess anti-cancer activity in cell based assays as described herein using various cancer cell lines, which demonstrate very efficient EGFR inhibitory activity targeting substantially the mutation and not substantially the wild type protein. In some embodiments, the mutated EGFR comprises a T790M mutation. Accordingly, the compounds and compositions comprising the compounds of the embodiments are useful to treat conditions characterized by those mutated cancer cells. In certain instances, the compounds are useful to treat sarcoma, epidermoid cancer, fibrosarcoma, cervical cancer, gastric carcinoma, skin cancer, leukemia, lymphoma, lung cancer, non-small cell lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, liver cancer, head and neck cancers, and pancreatic cancer.
In other embodiments, the compounds have been shown to have activity against a range of protein kinases, including EGFR, EGFR (T790M), BLK, BMX/ETK, BTK, JAK2, JAK3, TEC, TXK, FLT3, and FLT3 (D835Y). In certain instances, the compounds are useful to treat cancers, tumors, inflammatory diseases, autoimmune diseases, or immunologically related diseases. In other embodiments, such diseases are mediated by at least one kinase selected from BTK, JAK3, ITK, and BMX. In other embodiments, the cancers, tumors, inflammatory diseases, autoimmune diseases, or immunologically mediated diseases are mediated by abnormally activated B-lymphocytes, T-lymphocytes, or both. In other embodiments, the inflammatory diseases, autoimmune diseases, or immunologically mediated diseases are arthritis, rheumatoid arthritis, spondyloarthropathy, gouty arthritis, osteoarthritis, juvenile arthritis, other arthritic conditions, lupus, systemic lupus erythematosus (SLE), skin-related disease, psoriasis, dry eye, eczema, dermatitis, atopic dermatitis, pain, pulmonary disorder, lung inflammation, adult respiratory distress syndrome (ARDS), pulmonary sarcoidosis, chronic pulmonary inflammatory disease, chronic obstructive pulmonary disease (COPD), cardiovascular disease, artherosclerosis, myocardial infarction, congestive heart failure, cardiac reperfusion injury, inflammatory bowel disease, Crohn's disease, ulcerative colitis, irritable bowel syndrome, asthma, Sjogren's syndrome, autoimmunity thyroid disease, urticaria (cnidosis), multiple sclerosis, scleroderma, organ transplantation rejection, heteroplastic graft, idiopathic thrombocytopenic purpura (ITP), Parkinson's disease, Alzheimer's disease, diabetic associated diseases, inflammation, pelvic inflammatory disease, allergic rhinitis, allergic bronchitis, allergic sinusitis, leukemia, lymphioma, B-cell lymphoma, T-cell lymphoma, myeloma, acute lymphoid leukemia (ALL), chronic lymphoid leukemia (CLL), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), hairy cell leukemia, Hodgkin's disease, non-Hodgkin's lymphoma, multiple myeloma, myelodysplastic syndrome (MDS), myeloproliferative neoplasms (MPN), diffuse large B-cell lymphoma, follicular lymphoma, sarcoma, epidermoid cancer, fibrosarcoma, cervical cancer, gastric carcinoma, skin cancer, leukemia, lymphoma, lung cancer, non-small cell lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, liver cancer, head and neck cancers, or pancreatic cancer. In other embodiments, the diseases are autoimmune disease or transplant-induced inflammatory disorders including, but not limited to, allotransplantation, Graft versus host disease, or autoimmune diabetes.
Before the present invention is further described, it is to be understood that this invention is not limited to particular embodiments described, as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting, since the scope of the present invention will be limited only by the appended claims.
It must be noted that as used herein and in the appended claims, the singular forms “a,” “an,” and “the” include plural referents unless the context clearly dictates otherwise. It is further noted that the claims may be drafted to exclude any optional element. As such, this statement is intended to serve as antecedent basis for use of such exclusive terminology as “solely,” “only” and the like in connection with the recitation of claim elements, or use of a “negative” limitation.
As used herein, the terms “including,” “containing,” and “comprising” are used in their open, non-limiting sense.
To provide a more concise description, some of the quantitative expressions given herein are not qualified with the term “about”. It is understood that, whether the term “about” is used explicitly or not, every quantity given herein is meant to refer to the actual given value, and it is also meant to refer to the approximation to such given value that would reasonably be inferred based on the ordinary skill in the art, including equivalents and approximations due to the experimental and/or measurement conditions for such given value. Whenever a yield is given as a percentage, such yield refers to a mass of the entity for which the yield is given with respect to the maximum amount of the same entity that could be obtained under the particular stoichiometric conditions. Concentrations that are given as percentages refer to mass ratios, unless indicated differently.
Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although any methods and materials similar or equivalent to those described herein can also be used in the practice or testing of the present invention, the preferred methods and materials are now described. All publications mentioned herein are incorporated herein by reference to disclose and describe the methods and/or materials in connection with which the publications are cited.
Except as otherwise noted, the methods and techniques of the present embodiments are generally performed according to conventional methods well known in the art and as described in various general and more specific references that are cited and discussed throughout the present specification. See, e.g., Loudon, Organic Chemistry, Fourth Edition, New York: Oxford University Press, 2002; Smith and March, March's Advanced Organic Chemistry: Reactions, Mechanisms, and Structure, Fifth Edition, Wiley-Interscience, 2001.
The nomenclature used herein to name the subject compounds is illustrated in the Examples herein. This nomenclature has generally been derived using the commercially-available AutoNom software (MDL, San Leandro, Calif.).
It is appreciated that certain features of the invention, which are, for clarity, described in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of the invention, which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable subcombination. All combinations of the embodiments pertaining to the chemical groups represented by the variables are specifically embraced by the present invention and are disclosed herein just as if each and every combination was individually and explicitly disclosed, to the extent that such combinations embrace compounds that are stable compounds (i.e., compounds that can be isolated, characterized, and tested for biological activity). In addition, all subcombinations of the chemical groups listed in the embodiments describing such variables are also specifically embraced by the present invention and are disclosed herein just as if each and every such sub-combination of chemical groups was individually and explicitly disclosed herein.
Chemical Terms
The term “alkyl” refers to a straight- or branched-chain alkyl group having from 1 to 12 carbon atoms in the chain. Examples of alkyl groups include methyl (Me), ethyl (Et), n-propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl (tBu), pentyl, isopentyl, tert-pentyl, hexyl, isohexyl, and groups that in light of the ordinary skill in the art and the teachings provided herein would be considered equivalent to any one of the foregoing examples.
The term “alkoxy” refers to an alkyl group as defined above, bonded to an oxygen atom. The alkoxy group is connected to the parent structure via the oxygen atom.
The term “amino” refers to an —NH2 group, or a mono- or dialkylamino group.
The term “cycloalkyl” refers to a saturated or partially saturated, monocyclic, fused polycyclic, bridged polycyclic, or spiro polycyclic carbocycle having from 3 to 12 ring atoms per carbocycle. Illustrative examples of cycloalkyl groups include the following entities, in the form of properly bonded moieties:




The term “heteroaryl” refers to a monocyclic, fused bicyclic, or fused polycyclic aromatic heterocycle (ring structure having ring atoms selected from carbon atoms and up to four heteroatoms selected from nitrogen, oxygen, and sulfur) having from 3 to 12 ring atoms per heterocycle. Illustrative examples of heteroaryl groups include the following entities, in the form of properly bonded moieties:




The term “halogen” represents chlorine, fluorine, bromine, or iodine. The term “halo” represents chloro, fluoro, bromo, or iodo. The term “haloalkyl” means an alkyl as defined above, substituted with one or more halogen atoms. The term “haloalkoxy” means an alkoxy as defined above, substituted with one or more halogen atoms.
The term “acyl” refers to a group R—C(O)— of from 1 to 10 carbon atoms of a straight, branched, or cyclic configuration or a combination thereof, attached to the parent structure through carbonyl functionality. Such group may be saturated or unsaturated, and aliphatic or aromatic.
The term “cyano” refers to the group —CN.
The term “nitro” refers to the group —NO2.
The term “hydroxyl” refers to the group —OH.
Those skilled in the art will recognize that the species listed or illustrated above are not exhaustive, and that additional species within the scope of these defined terms may also be selected.
The term “substituted” means that the specified group or moiety bears one or more substituents. The term “unsubstituted” means that the specified group bears no substituents. The term “optionally substituted” means that the specified group is unsubstituted or substituted by one or more substituents. Where the term “substituted” is used to describe a structural system, the substitution is meant to occur at any valency-allowed position on the system.
Any formula depicted herein is intended to represent a compound of that structural formula as well as certain variations or forms. For example, a formula given herein is intended to include a racemic form, or one or more enantiomeric, diastereomeric, or geometric isomers, or a mixture thereof. Additionally, any formula given herein is intended to refer also to a hydrate, solvate, or polymorph of such a compound, or a mixture thereof.
Any formula given herein is also intended to represent unlabeled forms as well as isotopically labeled forms of the compounds. Isotopically labeled compounds have structures depicted by the formulas given herein except that one or more atoms are replaced by an atom having a selected atomic mass or mass number. Examples of isotopes that can be incorporated into compounds of the embodiments include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, chlorine, and iodine, such as 2H, 3H, 11C, 13C, 14C, 15N, 18O, 17O, 31P, 32P, 35S, 18F, 36Cl, and 125I respectively. Such isotopically-labelled compounds are useful in metabolic studies (preferably with 14C), reaction kinetic studies (with, for example 2H or 3H), detection or imaging techniques [such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT)] including drug or substrate tissue distribution assays, or in radioactive treatment of patients. In particular, an 18F or 11C labeled compound may be particularly preferred for PET or SPECT studies. Further, substitution with heavier isotopes such as deuterium (i.e., 2H) may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements. Isotopically-labeled compounds of the embodiments and prodrugs thereof can generally be prepared by carrying out the procedures disclosed in the schemes or in the examples and preparations described below by substituting a readily available isotopically-labeled reagent for a non-isotopically-labeled reagent.
The nomenclature “Ci-j” with j>i, when applied herein to a class of substituents, is meant to refer to embodiments for which each and every one of the number of carbon members, from i to j including i and j, is independently realized. By way of example, the term C1-3 refers independently to embodiments that have one carbon member (C1), embodiments that have two carbon members (C2), and embodiments that have three carbon members (C3).
Any disubstituent referred to herein is meant to encompass the various attachment possibilities when more than one of such possibilities are allowed. For example, reference to disubstituent -A-B—, where A≠B, refers herein to such disubstituent with A attached to a first substituted member and B attached to a second substituted member, and it also refers to such disubstituent with A attached to the second substituted member and B attached to the first substituted member.
The present disclosure provides pharmaceutically acceptable salts of the compounds represented by Formulae (I)-(VIII), preferably of those described above and of the specific compounds exemplified herein, and pharmaceutical compositions comprising such salts, and methods of using such salts.
A “pharmaceutically acceptable salt” is intended to mean a salt of a free acid or base of a compound represented herein that is non-toxic, biologically tolerable, or otherwise biologically suitable for administration to the subject. See, generally, S. M. Berge, et al., “Pharmaceutical Salts,” J. Pharm. Sci., 1977, 66, 1-19. Preferred pharmaceutically acceptable salts are those that are pharmacologically effective and suitable for contact with the tissues of subjects without undue toxicity, irritation, or allergic response. A compound described herein may possess a sufficiently acidic group, a sufficiently basic group, both types of functional groups, or more than one of each type, and accordingly react with a number of inorganic or organic bases, and inorganic and organic acids, to form a pharmaceutically acceptable salt.
Examples of pharmaceutically acceptable salts include sulfates, pyrosulfates, bisulfates, sulfites, bisulfites, phosphates, monohydrogen-phosphates, dihydrogenphosphates, metaphosphates, pyrophosphates, chlorides, bromides, iodides, acetates, propionates, decanoates, caprylates, acrylates, formates, isobutyrates, caproates, heptanoates, propiolates, oxalates, malonates, succinates, suberates, sebacates, fumarates, maleates, butyne-1,4-dioates, hexyne-1,6-dioates, benzoates, chlorobenzoates, methylbenzoates, dinitrobenzoates, hydroxybenzoates, methoxybenzoates, phthalates, sulfonates, methylsulfonates, propylsulfonates, besylates, xylenesulfonates, naphthalene-1-sulfonates, naphthalene-2-sulfonates, phenylacetates, phenylpropionates, phenylbutyrates, citrates, lactates, γ-hydroxybutyrates, glycolates, tartrates, and mandelates.
For a compound of Formulae (I)-(VIII) that contains a basic nitrogen, a pharmaceutically acceptable salt may be prepared by any suitable method available in the art, for example, treatment of the free base with an inorganic acid, such as hydrochloric acid, hydrobromic acid, sulfuric acid, sulfamic acid, nitric acid, boric acid, phosphoric acid, and the like, or with an organic acid, such as acetic acid, phenylacetic acid, propionic acid, stearic acid, lactic acid, ascorbic acid, maleic acid, hydroxymaleic acid, isethionic acid, succinic acid, valeric acid, fumaric acid, malonic acid, pyruvic acid, oxalic acid, glycolic acid, salicylic acid, oleic acid, palmitic acid, lauric acid, a pyranosidyl acid, such as glucuronic acid or galacturonic acid, an alpha-hydroxy acid, such as mandelic acid, citric acid, or tartaric acid, an amino acid, such as aspartic acid or glutamic acid, an aromatic acid, such as benzoic acid, 2-acetoxybenzoic acid, naphthoic acid, or cinnamic acid, a sulfonic acid, such as laurylsulfonic acid, p-toluenesulfonic acid, methanesulfonic acid, or ethanesulfonic acid, or any compatible mixture of acids such as those given as examples herein, and any other acid and mixture thereof that are regarded as equivalents or acceptable substitutes in light of the ordinary level of skill in this technology. In certain embodiments, the pharmaceutically acceptable salt is the HCl salt, maleic acid salt, HBr salt, hydroxybutanedioic acid salt, fumaric acid salt, lactic acid salt, tartaric acid salt, or methanesulfonic acid salt.
The present disclosure provides pharmaceutically acceptable prodrugs of the compounds of Formulae (I)-(VIII), and treatment methods employing such pharmaceutically acceptable prodrugs. The term “prodrug” means a precursor of a designated compound that, following administration to a subject, yields the compound in vivo via a chemical or physiological process such as solvolysis or enzymatic cleavage, or under physiological conditions (e.g., a prodrug on being brought to physiological pH is converted to the compound of Formulae (I)-(VIII)). A “pharmaceutically acceptable prodrug” is a prodrug that is non-toxic, biologically tolerable, and otherwise biologically suitable for administration to the subject. Illustrative procedures for the selection and preparation of suitable prodrug derivatives are described, for example, in “Design of Prodrugs”, ed. H. Bundgaard, Elsevier, 1985.
The present disclosure provides pharmaceutically active metabolites of compounds of Formulae (I)-(VIII), and uses of such metabolites in the methods of the embodiments. A “pharmaceutically active metabolite” means a pharmacologically active product of metabolism in the body of a compound of Formulae (I)-(VIII) or salt thereof. Prodrugs and active metabolites of a compound may be determined using routine techniques known or available in the art. See, e.g., Bertolini et al., J. Med. Chem. 1997, 40, 2011-2016; Shan et al., J. Pharm. Sci. 1997, 86 (7), 765-767; Bagshawe, Drug Dev. Res. 1995, 34, 220-230; Bodor, Adv. Drug Res. 1984, 13, 255-331; Bundgaard, Design of Prodrugs (Elsevier Press, 1985); and Larsen, Design and Application of Prodrugs, Drug Design and Development (Krogsgaard-Larsen et al., eds., Harwood Academic Publishers, 1991).
Representative Embodiments
Formula (VIII)
The present disclosure provides a compound of Formula (VIII). In some embodiments, X1 is O or NH. In other embodiments, X1 is CH2 or CF2. In still other embodiments, X1 is O.
In some embodiments of Formula (VIII), —NR18R19 is




In other embodiments, —NR18R19 is





In some embodiments, R15 is methyl, hydroxyethyl, methoxyethyl, or fluoroethyl. In other embodiments, R15 is fluoroethyl. In some embodiments, m is 1. In other embodiments, m is 2.

In some embodiments, R9 and R19 taken together form an optionally substituted 5- or 6-membered heteroaryl ring. In some embodiments, R19 and R9 together form a 5- or 6-membered ring optionally substituted with C1-6alkyl that is unsubstituted or substituted with amino. In some embodiments, the heteroaryl ring is substituted with dimethylaminomethyl or piperidinylmethyl. In other embodiments, R9 and R19 taken together form pyrrole or pyridine. In some embodiments, R18 is dimethylaminoethyl.
In some embodiments, R6 is methoxy. In other embodiments, R7 is methoxy. In certain instances, R7 is hydrogen or methoxy.
In some embodiments of Formula (VIII), each variable therein is defined as described below for any one of Formulas (I)-(VII) or embodiments thereof. In particular, certain embodiments of Formula (VIII) are as defined for each variable for Formula (I) below, and said definitions are incorporated herein by reference.
Formula (I)
The present disclosure provides a compound of Formula (Ia) and (Ib):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;
wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
a is one or two;
Ring A is an aromatic ring;
R20 and R21 are independently selected from hydrogen and C1-6 alkyl; wherein alkyl is unsubstituted or substituted with amino, hydroxyl, or halo; wherein R21 may not present to satisfy valency;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, C1-6 acyl, SO2—C1-6alkyl, C3-7 cycloalkyl, and C6-20 aryl,
wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
Formula (I) is meant to refer to Formula (Ia) and Formula (Ib).
In Formula (I), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are each hydrogen.
In Formula (I), n is a number from zero to 4. In certain instances, n is zero. In certain instances, n is one. In certain instances, n is 2. In certain instances, n is 3. In certain instances, n is 4.
In Formula (I), R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro. In certain instances, R3 is halo. In certain instances, R3 is hydroxyl. In certain instances, R3 is C1-6 alkyl. In certain instances, R3 is C1-6 alkoxy. In certain instances, R3 is cyano. In certain instances, R3 is nitro.
In Formula (I), R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23; wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R21 may be joined to form a 3 to 10 membered ring. In certain instances, R4 is hydrogen. In certain instances, R4 is C1-6 alkyl. In certain instances, R4 is C3-7 cycloalkyl. In certain instances, R4 is —NR22R23.
In certain instances, R4 is unsubstituted C1-6 alkyl. In certain instances, R4 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-3 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-6 alkyl that is substituted with amino. In certain instances, R4 is C1-6 alkyl that is substituted with —NH2. In certain instances, R4 is C1-6 alkyl that is substituted with —N(CH3)2. In certain instances, R4 is C1-3 alkyl that is substituted with —NH2. In certain instances, R4 is C1-3 alkyl that is substituted with —N(CH3)2.
In certain instances, R4 is unsubstituted C3-7 cycloalkyl. In certain instances, R4 is unsubstituted C3 cycloalkyl. In certain instances, R4 is unsubstituted C4 cycloalkyl. In certain instances, R4 is unsubstituted C5-6 cycloalkyl. In certain instances, R4 is unsubstituted C7 cycloalkyl.
In certain instances, R4 is NR22R23, wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring. In certain instances, R22 and R23 are hydrogen. In certain instances, R22 and R23 are C1-6 alkyl. In certain instances, R22 and R23 are C1-3 alkyl. In certain instances, R22 and R23 are methyl.
In certain instances, R22 and R23 may be joined to form a 3 to 10 membered ring, such that R4 is




where w is a number from 1 to 8. In certain instances, R22 and R23 may be joined to form a 3-membered ring. In certain instances, R22 and R23 may be joined to form a 4-membered ring. In certain instances, R22 and R23 may be joined to form a 5-membered ring. In certain instances, R22 and R23 may be joined to form a 6-membered ring. In certain instances, R22 and R23 may be joined to form a 7-membered ring.

In Formula (I), R5 is selected from hydrogen and C1-6 alkyl. In certain instances, R5 is hydrogen. In certain instances, R5 is C1-6 alkyl. In certain instances, R5 is methyl. In certain instances, R5 is ethyl. In certain instances, R5 is C1-3 alkyl. In certain instances, R5 is C4-6 alkyl.
In Formula (I), R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R6 is hydrogen. In certain instances, R6 is halo. In certain instances, R6 is fluoro. In certain instances, R6 is chloro. In certain instances, R6 is bromo. In certain instances, R6 is C1-6 alkyl. In certain instances, R6 is C1-6 haloalkyl. In certain instances, R6 is C2-6 alkoxy. In certain instances, R6 is C1-6 haloalkoxy. In certain instances, R6 is hydroxyl. In certain instances, R6 is cyano. In certain instances, R6 is nitro.
In Formula (I), R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R7 is hydrogen. In certain instances, R7 is halo. In certain instances, R7 is fluoro. In certain instances, R7 is chloro. In certain instances, R7 is bromo. In certain instances, R7 is C1-6 alkyl. In certain instances, R7 is C1-6 haloalkyl. In certain instances, R7 is C2-6 alkoxy. In certain instances, R7 is C1-6 haloalkoxy. In certain instances, R7 is hydroxyl. In certain instances, R7 is cyano. In certain instances, R7 is nitro.
In Formula (I), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (I), Q is CR9 or N. In certain instances, Q is CR9. In certain instances, Q is N.
In Formula (I), R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R9 is hydrogen. In certain instances, R9 is halo. In certain instances, R9 is fluoro. In certain instances, R9 is chloro. In certain instances, R9 is bromo. In certain instances, R9 is C1-6 alkyl. In certain instances, R9 is C1-6 haloalkyl. In certain instances, R9 is C1-6 alkoxy. In certain instances, R9 is C1-6 haloalkoxy. In certain instances, R9 is hydroxyl. In certain instances, R9 is cyano. In certain instances, R9 is nitro. In certain instances, R9 is hydrogen or fluoro.
In Formula (I), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl. In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (I), a is one or two and Ring A is an aromatic ring. In certain instances, a is one, as shown:




In certain instances, a is two, as shown:





In Formula (I), R20 and R21 are independently selected from hydrogen and C1-6 alkyl; wherein alkyl is unsubstituted or substituted with amino, hydroxyl, or halo; wherein R21 may not present to satisfy valency. In certain instances, R20 and R21 are independently hydrogen. In certain instances, R20 and R21 are independently unsubstituted C1-6 alkyl. In certain instances, R20 and R21 are independently C1-6 alkyl, substituted with amino. In certain instances, R20 and R21 are independently C1-6 alkyl, substituted with —NR24R25, wherein R24 and R25 are independently selected from hydrogen and C1-6alkyl. In certain instances, R20 and R21 are independently C1-6 alkyl, substituted with —NR24R25, wherein R24 and R25 are independently selected from hydrogen and C1-3alkyl. In certain instances, R20 and R21 are independently C1-6 alkyl, substituted with —NR24R25, wherein R24 and R25 are independently selected from hydrogen and methyl. In certain instances, R20 and R21 are independently C1-3 alkyl, substituted with —NR24R25, wherein R24 and R25 are independently selected from hydrogen and methyl. In certain instances, R20 and R21 are independently C1-6 alkyl, substituted with hydroxyl. In certain instances, R20 and R21 are C1-6 alkyl, substituted with halo.
In Formula (I), R11 is selected from hydrogen and C1-6 alkyl. In certain instances, R11 is hydrogen. In certain instances, R11 is C1-6 alkyl. In certain instances, R11 is methyl. In certain instances, R11 is ethyl. In certain instances, R11 is C1-3 alkyl. In certain instances, R11 is C4-6 alkyl.
In Formula (I), R12 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R12 is C1-6 alkyl. In certain instances, R12 is methyl. In certain instances, R12 is ethyl. In certain instances, R12 is C1-3 alkyl. In certain instances, R12 is C4-6 alkyl.
In Formula (I), R13 is selected from hydrogen, C1-6 alkyl, C1-6 acyl, SO2—C1-6alkyl, C3-7 cycloalkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C1-6 acyl. In certain instances, R13 is SO2—C1-6alkyl. In certain instances, R13 is C3-7 cycloalkyl. In certain instances, R13 is C6-20 aryl. In certain instances, R13 is C1-6alkyl substituted with hydroxyl or halo.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is C1-6 acyl. In certain instances, R13 is C1 acyl. In certain instances, R13 is C2 acyl. In certain instances, R13 is C3 acyl. In certain instances, R13 is C4-6 acyl.
In certain instances, R13 is SO2—C1-6alkyl. In certain instances, R13 is SO2—C1alkyl. n certain instances, R13 is SO2—C2alkyl. In certain instances, R13 is SO2—C3alkyl. In certain instances, R13 is SO2—C4-6alkyl.
In certain instances, R13 is C3-7 cycloalkyl. In certain instances, R13 is unsubstituted C3 cycloalkyl. In certain instances, R13 is unsubstituted C4 cycloalkyl. In certain instances, R13 is unsubstituted C5-6 cycloalkyl. In certain instances, R13 is unsubstituted C7 cycloalkyl.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R6, R7, R8, and R9 are hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R9 is halo. In certain instances, R6, R7, and R8 are hydrogen and R9 is fluoro.
In certain instances, R6, R7, R8, and R9 are hydrogen and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is halo; and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is fluoro; and R10 is methyl.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is hydrogen.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —CH2OH.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (II)
The present disclosure provides a compound of Formula (II):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R21 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In Formula (II), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are hydrogen.
In Formula (II), n is a number from zero to 4. In certain instances, n is zero. In certain instances, n is one. In certain instances, n is 2. In certain instances, n is 3. In certain instances, n is 4.
In Formula (II), R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro. In certain instances, R3 is halo. In certain instances, R3 is hydroxyl. In certain instances, R3 is C1-6 alkyl. In certain instances, R3 is C1-6 alkoxy. In certain instances, R3 is cyano. In certain instances, R3 is nitro.
In Formula (II), R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23; wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R21 may be joined to form a 3 to 10 membered ring. In certain instances, R4 is hydrogen. In certain instances, R4 is C1-6 alkyl. In certain instances, R4 is C3-7 cycloalkyl. In certain instances, R4 is —NR22R23.
In certain instances, R4 is unsubstituted C1-6 alkyl. In certain instances, R4 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-3 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-6 alkyl that is substituted with amino. In certain instances, R4 is C1-6 alkyl that is substituted with —NH2. In certain instances, R4 is C1-6 alkyl that is substituted with —N(CH3)2. In certain instances, R4 is C1-3 alkyl that is substituted with —NH2. In certain instances, R4 is C1-3 alkyl that is substituted with —N(CH3)2.
In certain instances, R4 is unsubstituted C3-7 cycloalkyl. In certain instances, R4 is unsubstituted C3 cycloalkyl. In certain instances, R4 is unsubstituted C4 cycloalkyl. In certain instances, R4 is unsubstituted C5-6 cycloalkyl. In certain instances, R4 is unsubstituted C7 cycloalkyl.
In certain instances, R4 is —NR22R23, wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring. In certain instances, R22 and R23 are hydrogen. In certain instances, R22 and R23 are C1-6 alkyl. In certain instances, R22 and R23 are C1-3 alkyl. In certain instances, R22 and R23 are methyl.
In certain instances, R22 and R23 may be joined to form a 3 to 10 membered ring, such that R4 is




where w is a number from 1 to 8. In certain instances, R22 and R23 may be joined to form a 3-membered ring. In certain instances, R22 and R23 may be joined to form a 4-membered ring. In certain instances, R22 and R23 may be joined to form a 5-membered ring. In certain instances, R22 and R23 may be joined to form a 6-membered ring. In certain instances, R22 and R23 may be joined to form a 7-membered ring.

In Formula (II), R5 is selected from hydrogen and C1-6 alkyl. In certain instances, R5 is hydrogen. In certain instances, R5 is C1-6 alkyl. In certain instances, R5 is methyl. In certain instances, R5 is ethyl. In certain instances, R5 is C1-3 alkyl. In certain instances, R5 is C4-6 alkyl.
In Formula (II), R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R6 is hydrogen. In certain instances, R6 is halo. In certain instances, R6 is fluoro. In certain instances, R6 is chloro. In certain instances, R6 is bromo. In certain instances, R6 is C1-6 alkyl. In certain instances, R6 is C1-6 haloalkyl. In certain instances, R6 is C2-6 alkoxy. In certain instances, R6 is C1-6 haloalkoxy. In certain instances, R6 is hydroxyl. In certain instances, R6 is cyano. In certain instances, R6 is nitro.
In Formula (II), R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R7 is hydrogen. In certain instances, R7 is halo. In certain instances, R7 is fluoro. In certain instances, R7 is chloro. In certain instances, R7 is bromo. In certain instances, R7 is C1-6 alkyl. In certain instances, R7 is C1-6 haloalkyl. In certain instances, R7 is C2-6 alkoxy. In certain instances, R7 is C1-6 haloalkoxy. In certain instances, R7 is hydroxyl. In certain instances, R7 is cyano. In certain instances, R7 is nitro.
In Formula (II), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (II), Q is CR9 or N. In certain instances, Q is CR9. In certain instances, Q is N.
In Formula (II), R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R9 is hydrogen. In certain instances, R9 is halo. In certain instances, R9 is fluoro. In certain instances, R9 is chloro. In certain instances, R9 is bromo. In certain instances, R9 is C1-6 alkyl. In certain instances, R9 is C1-6 haloalkyl. In certain instances, R9 is C1-6 alkoxy. In certain instances, R9 is C1-6 haloalkoxy. In certain instances, R9 is hydroxyl. In certain instances, R9 is cyano. In certain instances, R9 is nitro.
In Formula (II), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl. In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (II), R11 is selected from hydrogen and C1-6 alkyl. In certain instances, R11 is hydrogen. In certain instances, R11 is C1-6 alkyl. In certain instances, R11 is methyl. In certain instances, R11 is ethyl. In certain instances, R11 is C1-3 alkyl. In certain instances, R11 is C4-6 alkyl.
In Formula (II), R12 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R12 is C1-6 alkyl. In certain instances, R12 is methyl. In certain instances, R12 is ethyl. In certain instances, R12 is C1-3 alkyl. In certain instances, R12 is C4-6 alkyl.
In Formula (II), R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C6-20 aryl.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R6, R7, R8, and R9 are hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R9 is halo. In certain instances, R6, R7, and R8 are hydrogen and R9 is fluoro.
In certain instances, R6, R7, R8, and R9 are hydrogen and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is halo; and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is fluoro; and R10 is methyl.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is hydrogen.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —CH2OH.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (III)
The present disclosure provides a compound of Formula (III):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In Formula (III), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are hydrogen.
In Formula (III), n is a number from zero to 4. In certain instances, n is zero. In certain instances, n is one. In certain instances, n is 2. In certain instances, n is 3. In certain instances, n is 4.
In Formula (III), R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro. In certain instances, R3 is halo. In certain instances, R3 is hydroxyl. In certain instances, R3 is C1-6 alkyl. In certain instances, R3 is C1-6 alkoxy. In certain instances, R3 is cyano. In certain instances, R3 is nitro.
In Formula (III), R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23; wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R21 may be joined to form a 3 to 10 membered ring. In certain instances, R4 is hydrogen. In certain instances, R4 is C1-6 alkyl. In certain instances, R4 is C3-7 cycloalkyl. In certain instances, R4 is —NR22R23.
In certain instances, R4 is unsubstituted C1-6 alkyl. In certain instances, R4 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-3 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-6 alkyl that is substituted with amino. In certain instances, R4 is C1-6 alkyl that is substituted with —NH2. In certain instances, R4 is C1-6 alkyl that is substituted with —N(CH3)2. In certain instances, R4 is C1-3 alkyl that is substituted with —NH2. In certain instances, R4 is C1-3 alkyl that is substituted with —N(CH3)2.
In certain instances, R4 is unsubstituted C3-7 cycloalkyl. In certain instances, R4 is unsubstituted C3 cycloalkyl. In certain instances, R4 is unsubstituted C4 cycloalkyl. In certain instances, R4 is unsubstituted C5-6 cycloalkyl. In certain instances, R4 is unsubstituted C7 cycloalkyl.
In certain instances, R4 is —NR22R23, wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring. In certain instances, R22 and R23 are hydrogen. In certain instances, R22 and R23 are C1-6 alkyl. In certain instances, R22 and R23 are C1-3 alkyl. In certain instances, R22 and R23 are methyl.
In certain instances, R22 and R23 may be joined to form a 3 to 10 membered ring, such that R4 is




where w is a number from 1 to 8. In certain instances, R22 and R23 may be joined to form a 3-membered ring. In certain instances, R22 and R23 may be joined to form a 4-membered ring. In certain instances, R22 and R23 may be joined to form a 5-membered ring. In certain instances, R22 and R23 may be joined to form a 6-membered ring. In certain instances, R22 and R23 may be joined to form a 7-membered ring.

In Formula (III), R5 is selected from hydrogen and C1-6 alkyl. In certain instances, R5 is hydrogen. In certain instances, R5 is C1-6 alkyl. In certain instances, R5 is methyl. In certain instances, R5 is ethyl. In certain instances, R5 is C1-3 alkyl. In certain instances, R5 is C4-6 alkyl.
In Formula (III), R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R6 is hydrogen. In certain instances, R6 is halo. In certain instances, R6 is fluoro. In certain instances, R6 is chloro. In certain instances, R6 is bromo. In certain instances, R6 is C1-6 alkyl. In certain instances, R6 is C1-6 haloalkyl. In certain instances, R6 is C2-6 alkoxy. In certain instances, R6 is C1-6 haloalkoxy. In certain instances, R6 is hydroxyl. In certain instances, R6 is cyano. In certain instances, R6 is nitro.
In Formula (III), R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R7 is hydrogen. In certain instances, R7 is halo. In certain instances, R7 is fluoro. In certain instances, R7 is chloro. In certain instances, R7 is bromo. In certain instances, R7 is C1-6 alkyl. In certain instances, R7 is C1-6 haloalkyl. In certain instances, R7 is C2-6 alkoxy. In certain instances, R7 is C1-6 haloalkoxy. In certain instances, R7 is hydroxyl. In certain instances, R7 is cyano. In certain instances, R7 is nitro.
In Formula (III), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (III), R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R9 is hydrogen. In certain instances, R9 is halo. In certain instances, R9 is fluoro. In certain instances, R9 is chloro. In certain instances, R9 is bromo. In certain instances, R9 is C1-6 alkyl. In certain instances, R9 is C1-6 haloalkyl. In certain instances, R9 is C1-6 alkoxy. In certain instances, R9 is C1-6 haloalkoxy. In certain instances, R9 is hydroxyl. In certain instances, R9 is cyano. In certain instances, R9 is nitro.
In Formula (III), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl.
In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (III), R11 is selected from hydrogen and C1-6 alkyl. In certain instances, R11 is hydrogen. In certain instances, R11 is C1-6 alkyl. In certain instances, R11 is methyl. In certain instances, R11 is ethyl. In certain instances, R11 is C1-3 alkyl. In certain instances, R11 is C4-6 alkyl.
In Formula (III), R12 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R12 is C1-6 alkyl. In certain instances, R12 is methyl. In certain instances, R12 is ethyl. In certain instances, R12 is C1-3 alkyl. In certain instances, R12 is C4-6 alkyl.
In Formula (III), R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C6-20 aryl.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R6, R7, R8, and R9 are hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R9 is halo. In certain instances, R6, R7, and R8 are hydrogen and R9 is fluoro.
In certain instances, R6, R7, R8, and R9 are hydrogen and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is halo; and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is fluoro; and R10 is methyl.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is hydrogen.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —CH2OH.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (IV)
The present disclosure provides a compound of Formula (IV):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23;

    
    
        wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
        wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring;
    
    


R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In Formula (IV), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are hydrogen.
In Formula (IV), n is a number from zero to 4. In certain instances, n is zero. In certain instances, n is one. In certain instances, n is 2. In certain instances, n is 3. In certain instances, n is 4.
In Formula (IV), R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro. In certain instances, R3 is halo. In certain instances, R3 is hydroxyl. In certain instances, R3 is C1-6 alkyl. In certain instances, R3 is C1-6 alkoxy. In certain instances, R3 is cyano. In certain instances, R3 is nitro.
In Formula (IV), R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and —NR22R23; wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R21 may be joined to form a 3 to 10 membered ring. In certain instances, R4 is hydrogen. In certain instances, R4 is C1-6 alkyl. In certain instances, R4 is C3-7 cycloalkyl. In certain instances, R4 is —NR22R23.
In certain instances, R4 is unsubstituted C1-6 alkyl. In certain instances, R4 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-3 alkyl that is substituted with hydroxyl. In certain instances, R4 is C1-6 alkyl that is substituted with amino. In certain instances, R4 is C1-6 alkyl that is substituted with —NH2. In certain instances, R4 is C1-6 alkyl that is substituted with —N(CH3)2. In certain instances, R4 is C1-3 alkyl that is substituted with —NH2. In certain instances, R4 is C1-3 alkyl that is substituted with —N(CH3)2.
In certain instances, R4 is unsubstituted C3-7 cycloalkyl. In certain instances, R4 is unsubstituted C3 cycloalkyl. In certain instances, R4 is unsubstituted C4 cycloalkyl. In certain instances, R4 is unsubstituted C5-6 cycloalkyl. In certain instances, R4 is unsubstituted C7 cycloalkyl.
In certain instances, R4 is —NR22R23, wherein each R22 and R23 are independently selected from hydrogen and C1-6 alkyl or R22 and R23 may be joined to form a 3 to 10 membered ring. In certain instances, R22 and R23 are hydrogen. In certain instances, R22 and R23 are C1-6 alkyl. In certain instances, R22 and R23 are C1-3 alkyl. In certain instances, R22 and R23 are methyl.
In certain instances, R22 and R23 may be joined to form a 3 to 10 membered ring, such that R4 is




where w is a number from 1 to 8. In certain instances, R22 and R23 may be joined to form a 3-membered ring. In certain instances, R22 and R23 may be joined to form a 4-membered ring. In certain instances, R22 and R23 may be joined to form a 5-membered ring. In certain instances, R22 and R23 may be joined to form a 6-membered ring. In certain instances, R22 and R23 may be joined to form a 7-membered ring.

In Formula (IV), R5 is selected from hydrogen and C1-6 alkyl. In certain instances, R5 is hydrogen. In certain instances, R5 is C1-6 alkyl. In certain instances, R5 is methyl. In certain instances, R5 is ethyl. In certain instances, R5 is C1-3 alkyl. In certain instances, R5 is C4-6 alkyl.
In Formula (IV), R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R6 is hydrogen. In certain instances, R6 is halo. In certain instances, R6 is fluoro. In certain instances, R6 is chloro. In certain instances, R6 is bromo. In certain instances, R6 is C1-6 alkyl. In certain instances, R6 is C1-6 haloalkyl. In certain instances, R6 is C2-6 alkoxy. In certain instances, R6 is C1-6 haloalkoxy. In certain instances, R6 is hydroxyl. In certain instances, R6 is cyano. In certain instances, R6 is nitro.
In Formula (IV), R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R7 is hydrogen. In certain instances, R7 is halo. In certain instances, R7 is fluoro. In certain instances, R7 is chloro. In certain instances, R7 is bromo. In certain instances, R7 is C1-6 alkyl. In certain instances, R7 is C1-6 haloalkyl. In certain instances, R7 is C2-6 alkoxy. In certain instances, R7 is C1-6 haloalkoxy. In certain instances, R7 is hydroxyl. In certain instances, R7 is cyano. In certain instances, R7 is nitro.
In Formula (IV), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (IV), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl. In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (IV), R11 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R11 is C1-6 alkyl. In certain instances, R11 is methyl. In certain instances, R11 is ethyl. In certain instances, R11 is C1-3 alkyl. In certain instances, R11 is C4-6 alkyl.
In Formula (IV), R12 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R12 is C1-6 alkyl. In certain instances, R12 is methyl. In certain instances, R12 is ethyl. In certain instances, R12 is C1-3 alkyl. In certain instances, R12 is C4-6 alkyl.
In Formula (IV), R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C6-20 aryl.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R6, R7, and R8 are hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R10 is methyl. In certain instances, R6, R7, and R8 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (V)
The present disclosure provides a compound of Formula (V):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl;
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In Formula (V), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are hydrogen.
In Formula (V), R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R6 is hydrogen. In certain instances, R6 is halo. In certain instances, R6 is fluoro. In certain instances, R6 is chloro. In certain instances, R6 is bromo. In certain instances, R6 is C1-6 alkyl. In certain instances, R6 is C1-6 haloalkyl. In certain instances, R6 is C2-6 alkoxy. In certain instances, R6 is C1-6 haloalkoxy. In certain instances, R6 is hydroxyl. In certain instances, R6 is cyano. In certain instances, R6 is nitro.
In Formula (V), R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C2-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R7 is hydrogen. In certain instances, R7 is halo. In certain instances, R7 is fluoro. In certain instances, R7 is chloro. In certain instances, R7 is bromo. In certain instances, R7 is C1-6 alkyl. In certain instances, R7 is C1-6 haloalkyl. In certain instances, R7 is C2-6 alkoxy. In certain instances, R7 is C1-6 haloalkoxy. In certain instances, R7 is hydroxyl. In certain instances, R7 is cyano. In certain instances, R7 is nitro.
In Formula (V), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (V), Q is CR9 or N. In certain instances, Q is CR9. In certain instances, Q is N.
In Formula (V), R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R9 is hydrogen. In certain instances, R9 is halo. In certain instances, R9 is fluoro. In certain instances, R9 is chloro. In certain instances, R9 is bromo. In certain instances, R9 is C1-6 alkyl. In certain instances, R9 is C1-6 haloalkyl. In certain instances, R9 is C1-6 alkoxy. In certain instances, R9 is C1-6 haloalkoxy. In certain instances, R9 is hydroxyl. In certain instances, R9 is cyano. In certain instances, R9 is nitro.
In Formula (V), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl. In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (V), R11 is selected from hydrogen and C1-6 alkyl. In certain instances, R11 is hydrogen. In certain instances, R11 is C1-6 alkyl. In certain instances, R11 is methyl. In certain instances, R11 is ethyl. In certain instances, R11 is C1-3 alkyl. In certain instances, R11 is C4-6 alkyl.
In Formula (V), R12 is selected from hydrogen and C1-6 alkyl. In certain instances, R12 is hydrogen. In certain instances, R12 is C1-6 alkyl. In certain instances, R12 is methyl. In certain instances, R12 is ethyl. In certain instances, R12 is C1-3 alkyl. In certain instances, R12 is C4-6 alkyl.
In Formula (V), R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C6-20 aryl.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R6, R7, R8, and R9 are hydrogen. In certain instances, R6, R7, and R8 are hydrogen and R9 is halo. In certain instances, R6, R7, and R8 are hydrogen and R9 is fluoro.
In certain instances, R6, R7, R8, and R9 are hydrogen and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is halo; and R10 is methyl. In certain instances, R6, R7, R8 are hydrogen; R9 is fluoro; and R10 is methyl.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is hydrogen. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is hydrogen.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —CH2OH. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —CH2OH.
In certain instances, R6, R7, R8, and R9 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is halo; and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R6, R7, and R8 are hydrogen; R9 is fluoro; and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (VI)
The present disclosure provides a compound of Formula (VI):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.
In Formula (VI), R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl. In certain instances, R1 is hydrogen. In certain instances, R1 is C1-6 alkyl. In certain instances, R1 is methyl or ethyl. In certain instances, R2 is hydrogen. In certain instances, R2 is C1-6 alkyl. In certain instances, R2 is methyl or ethyl. In certain instances, R1 and R2 are hydrogen.
In Formula (VI), R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R8 is hydrogen. In certain instances, R8 is halo. In certain instances, R8 is fluoro. In certain instances, R8 is chloro. In certain instances, R8 is bromo. In certain instances, R8 is C1-6 alkyl. In certain instances, R8 is C1-6 haloalkyl. In certain instances, R8 is C1-6 alkoxy. In certain instances, R8 is C1-6 haloalkoxy. In certain instances, R8 is hydroxyl. In certain instances, R8 is cyano. In certain instances, R8 is nitro.
In Formula (VI), Q is CR9 or N. In certain instances, Q is CR9. In certain instances, Q is N.
In Formula (VI), R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro. In certain instances, R9 is hydrogen. In certain instances, R9 is halo. In certain instances, R9 is fluoro. In certain instances, R9 is chloro. In certain instances, R9 is bromo. In certain instances, R9 is C1-6 alkyl. In certain instances, R9 is C1-6 haloalkyl. In certain instances, R9 is C1-6 alkoxy. In certain instances, R9 is C1-6 haloalkoxy. In certain instances, R9 is hydroxyl. In certain instances, R9 is cyano. In certain instances, R9 is nitro.
In Formula (VI), R10 is selected from hydrogen and C1-6 alkyl. In certain instances, R10 is hydrogen. In certain instances, R10 is C1-6 alkyl. In certain instances, R10 is methyl. In certain instances, R10 is ethyl. In certain instances, R10 is C1-3 alkyl. In certain instances, R10 is C4-6 alkyl.
In Formula (VI), R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo. In certain instances, R13 is hydrogen. In certain instances, R13 is C1-6 alkyl. In certain instances, R13 is C6-20 aryl.
In certain instances, R13 is unsubstituted C1-6 alkyl. In certain instances, R13 is C1-6 alkyl that is substituted with hydroxyl. In certain instances, R13 is —(CH2)mOH, wherein m is a number from one to 3. In certain instances, R13 is —CH2OH. In certain instances, R13 is C1-6 alkyl that is substituted with C1-6 alkoxy.
In certain instances, R13 is C1-6 alkyl that is substituted with halo. In certain instances, R13 is —(CH2)mX, wherein m is a number from one to 3 and X is halo. In certain instances, R13 is C1-6 alkyl that is substituted with fluoro. In certain instances, R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R13 is —(CH2)2F.
In certain instances, R13 is unsubstituted C6-20 aryl. In certain instances, R13 is C6-20 aryl that is substituted with hydroxyl. In certain instances, R13 is C6-20 aryl that is substituted with C1-6 alkoxy. In certain instances, R13 is C6-20 aryl that is substituted with halo.
In certain instances, R8 and R9 are hydrogen. In certain instances, R8 is hydrogen and R9 is halo. In certain instances, R8 is hydrogen and R9 is fluoro.
In certain instances, R8 and R9 are hydrogen and R10 is methyl. In certain instances, R8 is hydrogen; R9 is halo; and R10 is methyl. In certain instances, R8 is hydrogen; R9 is fluoro; and R10 is methyl.
In certain instances, R8 and R9 are hydrogen and R13 is hydrogen. In certain instances, R8 is hydrogen; R9 is halo; and R13 is hydrogen. In certain instances, R8 is hydrogen; R9 is fluoro; and R13 is hydrogen.
In certain instances, R8 and R9 are hydrogen and R13 is —CH2OH. In certain instances, R8 is hydrogen; R9 is halo; and R13 is —CH2OH. In certain instances, R8 is hydrogen; R9 is fluoro; and R13 is —CH2OH.
In certain instances, R8 and R9 are hydrogen and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R8 is hydrogen; R9 is halo; and R13 is —(CH2)mF, wherein m is a number from one to 3. In certain instances, R8 is hydrogen; R9 is fluoro; and R13 is —(CH2)mF, wherein m is a number from one to 3.
Formula (VII)
The present disclosure provides a compound of Formula (VII):




wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R8 is selected from halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 alkoxy, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is C1-6 alkyl; and
R13 is hydrogen or C1-6 alkyl;
or a pharmaceutically acceptable salt thereof.
In some embodiments of Formula (VII), R1 and R2 are each hydrogen. In other embodiments, R8 is halo, methyl, methoxy, or cyano. In still other embodiments, R8 is halo. In still other embodiments, R8 is fluoro. In some embodiments, R10 is methyl, ethyl, or isopropyl. In other embodiments, R10 is methyl. In some embodiments, R13 is hydrogen, methyl, ethyl, or isopropyl. In other embodiments, R13 is hydrogen.
In some embodiments of compounds of Formulae (I)-(VI), R6 and R7 may also be methoxy, provided that neither R6 nor R7 is methoxy when R10 is methyl. In other embodiments of Formulae (I)-(VII), the




group is replaced with





where m and R15 are defined herein.

Formula XX

In some embodiments, a compound of the invention is a compound of Formula XX:




wherein:

R30 and R31 are each independently H or C1-4alkyl;

R32 is H and R33 is





or R32 and R33 taken together with the nitrogen to which

they are attached form




wherein R36 is H, C1-4alkyl, or C1-4haloalkyl; and
R37 is H or C1-4alkyl;
Q is CH, CF, or N;
R34 is H or methoxy;
R35 is H, —CH2OH, or —CH2CH2F;
wherein R34 is not methoxy when Q is CH, —NR32R33 is




and R37 is methyl; or a pharmaceutically acceptable salt thereof.

In some embodiments of Formula (XX), R30 and R31 are both H. In some embodiments R32 is H and R33 is




In some embodiments, R36 is —CH2CH2F. In other embodiments, R32 and R33 taken together with the nitrogen to which they are attached form





In still other embodiments, R37 is methyl. In other embodiments, Q is N and R34 is H. In still other embodiments, Q is CH and R34 is methoxy. In still other embodiments, Q is CF and R34 is H. In other embodiments, R35 is H.

In certain embodiments, the present disclosure provides a compound selected from:












Compound
Structure
Chemical Name







1




N-(3-((2-((4-(4-methylpiperazin-1- yl)phenyl)amino)-7H-pyrrolo[2,3- d]pyrimidin-4-yl)oxy)phenyl)acrylamide


 


2




N-(3-((2-((6-(4-methylpiperazin-1-yl)pyridin- 3-yl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


3




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-7H-pyrrolo[2,3-d]- pyrimidin-4-yl)oxy)phenyl)acrylamide


 


4




N-(3-((7-(hydroxymethyl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


5




N-(3-((7-(hydroxymethyl)-2-((6-(4- methylpiperazin-1-yl)pyridin-3-yl)amino)- 7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)- phenyl)acrylamide


 


6




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-7-(hydroxymethyl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide; and


 


7




N-(3-((7-(2-fluoroethyl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide









and pharmaceutically acceptable salts thereof.

In certain embodiments, the present disclosure provides a compound selected from:












Compound
Structure
Chemical Name







 8




N-(3-((2-((1-(2-(dimethylamino)ethyl)-1H- indol-5-yl)amino)-7H-pyrrolo[2,3-d]- pyrimidin-4-yl)oxy)phenyl)acrylamide


 


 9




N-(3-((2-((2- ((dimethylamino)methyl)quinolin-6- yl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


10




N-(3-((5-cyclopropyl-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


11




N-(3-((5-cyclopropyl-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


12




N-(3-((2-((4-(4-methylpiperazin-1- yl)phenyl)amino)-5-(pyrrolidin-1-yl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


13




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-5-(pyrrolidin-1-yl)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


14




N-(3-((5-(2-hydroxyethyl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


15




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-5-(2-hydroxyethyl)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


16




N-(3-((5-((dimethylamino)methyl)-2-((4- (4-methylpiperazin-1-yl)phenyl)amino)- 7H-pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


17




N-(3-((5-((dimethylamino)methyl)-2-((3- fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-7H-pyrrolo[2,3- d]pyrimidin-4-yl)oxy)phenyl)acrylamide


 


18




N-(3-((5-(dimethylamino)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


19




N-(3-((5-(dimethylamino)-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


20




N-(3-((5-(2-(dimethylamino)ethyl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


21




N-(3-((5-(2-(dimethylamino)ethyl)-2-((3- fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-7H-pyrrolo[2,3- d]pyrimidin-4-yl)oxy)phenyl)acrylamide


 


22




N-(3-((5-(aziridin-1-yl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


23




N-(3-((5-(aziridin-1-yl)-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


24




N-(3-((5-(azetidin-1-yl)-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


25




N-(3-((5-(azetidin-1-yl)-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


26




N-(3-((2-((4-(4-methylpiperazin-1- yl)phenyl)amino)-5-(piperidin-1-yl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


27




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-5-(piperidin-1-yl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


28




N-(3-((7-cyclopropyl-2-((4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


29




N-(3-((7-cyclopropyl-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)- phenyl)acrylamide


 


30




N-(3-((2-((4-(4-methylpiperazin-1- yl)phenyl)amino)-7-(methylsulfonyl)-7H- pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)- acrylamide


 


31




N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1- yl)phenyl)amino)-7-(methylsulfonyl)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


32




N-(3-((7-acetyl-2-((4-(4-methylpiperazin-1- yl)phenyl)amino)-7H-pyrrolo[2,3- d]pyrimidin-4-yl)oxy)phenyl)acrylamide


 


33




N-(3-((7-acetyl-2-((3-fluoro-4-(4- methylpiperazin-1-yl)phenyl)amino)-7H- pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide


 


34




N-(3-(2-(4-(1-(2-fluoroethyl)azetidin-3- ylamino)-2-methoxyphenylamino)-7H- pyrrolo[2,3-d]pyrimidin-4- yloxy)phenyl)acrylamide


 


35




N-(3-(2-(4-(1-(2-fluoroethyl)azetidin-3- ylamino)-2-methoxyphenylamino)-7H- pyrrolo[2,3-d]pyrimidin-4- ylamino)phenyl)acrylamide; and


 


36




N-(3-((2-((2-(piperidin-1-ylmethyl)quinolin- 6-yl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4- yl)oxy)phenyl)acrylamide









and pharmaceutically acceptable salts thereof.

In certain embodiments, the present disclosure provides Compound 3, N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide,




and pharmaceutically acceptable salts thereof. In certain embodiments, the present disclosure provides the maleate salt of Compound 3, N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide. In certain embodiments, the present disclosure provides the hydrochloride salt of Compound 3, N-(3-((2-((3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide.

The disclosed pharmaceutical compositions can be formulated as a pharmaceutically acceptable salt of a disclosed compound. Pharmaceutically acceptable salts are non-toxic salts of a free base form of a compound that possesses the desired pharmacological activity of the free base. These salts may be derived from inorganic or organic acids. Non-limiting examples of pharmaceutically acceptable salts include sulfates, pyrosulfates, bisulfates, sulfites, bisulfites, phosphates, monohydrogen-phosphates, dihydrogenphosphates, metaphosphates, pyrophosphates, chlorides, bromides, iodides, acetates, propionates, decanoates, caprylates, acrylates, formates, isobutyrates, caproates, heptanoates, propiolates, oxalates, malonates, succinates, suberates, sebacates, fumarates, maleates, butyne-1,4-dioates, hexyne-1,6-dioates, benzoates, chlorobenzoates, methylbenzoates, dinitrobenzoates, hydroxybenzoates, methoxybenzoates, phthalates, sulfonates, methylsulfonates, propylsulfonates, besylates, xylenesulfonates, naphthalene-1-sulfonates, naphthalene-2-sulfonates, phenylacetates, phenylpropionates, phenylbutyrates, citrates, lactates, γ-hydroxybutyrates, glycolates, tartrates, and mandelates. Lists of other suitable pharmaceutically acceptable salts are found in Remington's Pharmaceutical Sciences, 17th Edition, Mack Publishing Company, Easton, Pa., 1985.
Pharmaceutical Compositions
For treatment purposes, pharmaceutical compositions comprising the compounds described herein may further comprise one or more pharmaceutically-acceptable excipients. A pharmaceutically-acceptable excipient is a substance that is non-toxic and otherwise biologically suitable for administration to a subject. Such excipients facilitate administration of the compounds described herein and are compatible with the active ingredient. Examples of pharmaceutically-acceptable excipients include stabilizers, lubricants, surfactants, diluents, anti-oxidants, binders, coloring agents, bulking agents, emulsifiers, or taste-modifying agents. In preferred embodiments, pharmaceutical compositions according to the embodiments are sterile compositions. Pharmaceutical compositions may be prepared using compounding techniques known or that become available to those skilled in the art.
Sterile compositions are within the present disclosure, including compositions that are in accord with national and local regulations governing such compositions.
The pharmaceutical compositions and compounds described herein may be formulated as solutions, emulsions, suspensions, or dispersions in suitable pharmaceutical solvents or carriers, or as pills, tablets, lozenges, suppositories, sachets, dragees, granules, powders, powders for reconstitution, or capsules along with solid carriers according to conventional methods known in the art for preparation of various dosage forms. Pharmaceutical compositions of the embodiments may be administered by a suitable route of delivery, such as oral, parenteral, rectal, nasal, topical, or ocular routes, or by inhalation. Preferably, the compositions are formulated for intravenous or oral administration.
For oral administration, the compounds of the embodiments may be provided in a solid form, such as a tablet or capsule, or as a solution, emulsion, or suspension. To prepare the oral compositions, the compounds of the embodiments may be formulated to yield a dosage of, e.g., from about 0.01 to about 50 mg/kg daily, or from about 0.05 to about 20 mg/kg daily, or from about 0.1 to about 10 mg/kg daily. Oral tablets may include the active ingredient(s) mixed with compatible pharmaceutically acceptable excipients such as diluents, disintegrating agents, binding agents, lubricating agents, sweetening agents, flavoring agents, coloring agents and preservative agents. Suitable inert fillers include sodium and calcium carbonate, sodium and calcium phosphate, lactose, starch, sugar, glucose, methyl cellulose, magnesium stearate, mannitol, sorbitol, and the like. Exemplary liquid oral excipients include ethanol, glycerol, water, and the like. Starch, polyvinyl-pyrrolidone (PVP), sodium starch glycolate, microcrystalline cellulose, and alginic acid are exemplary disintegrating agents. Binding agents may include starch and gelatin. The lubricating agent, if present, may be magnesium stearate, stearic acid, or talc. If desired, the tablets may be coated with a material such as glyceryl monostearate or glyceryl distearate to delay absorption in the gastrointestinal tract, or may be coated with an enteric coating.
Capsules for oral administration include hard and soft gelatin capsules. To prepare hard gelatin capsules, active ingredient(s) may be mixed with a solid, semi-solid, or liquid diluent. Soft gelatin capsules may be prepared by mixing the active ingredient with water, an oil, such as peanut oil or olive oil, liquid paraffin, a mixture of mono and di-glycerides of short chain fatty acids, polyethylene glycol 400, or propylene glycol.
Liquids for oral administration may be in the form of suspensions, solutions, emulsions, or syrups, or may be lyophilized or presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid compositions may optionally contain: pharmaceutically-acceptable excipients such as suspending agents (for example, sorbitol, methyl cellulose, sodium alginate, gelatin, hydroxyethylcellulose, carboxymethylcellulose, aluminum stearate gel and the like); non-aqueous vehicles, e.g., oil (for example, almond oil or fractionated coconut oil), propylene glycol, ethyl alcohol, or water; preservatives (for example, methyl or propyl p-hydroxybenzoate or sorbic acid); wetting agents such as lecithin; and, if desired, flavoring or coloring agents.
The compositions may be formulated for rectal administration as a suppository. For parenteral use, including intravenous, intramuscular, intraperitoneal, intranasal, or subcutaneous routes, the compounds of the embodiments may be provided in sterile aqueous solutions or suspensions, buffered to an appropriate pH and isotonicity or in parenterally acceptable oil. Suitable aqueous vehicles include Ringer's solution and isotonic sodium chloride. Such forms may be presented in unit-dose form such as ampoules or disposable injection devices, in multi-dose forms such as vials from which the appropriate dose may be withdrawn, or in a solid form or pre-concentrate that can be used to prepare an injectable formulation. Illustrative infusion doses range from about 1 to 1000 μg/kg/minute of agent admixed with a pharmaceutical carrier over a period ranging from several minutes to several days.
For nasal, inhaled, or oral administration, the pharmaceutical compositions may be administered using, for example, a spray formulation also containing a suitable carrier.
For topical applications, the compounds of the embodiments are preferably formulated as creams or ointments or a similar vehicle suitable for topical administration. For topical administration, the compounds of the embodiments may be mixed with a pharmaceutical carrier at a concentration of about 0.1% to about 10% of drug to vehicle. Another mode of administering the compounds of the embodiments may utilize a patch formulation to effect transdermal delivery.
In certain embodiments, the present disclosure provides pharmaceutical composition comprising a compound of formulae (I)-(VIII) and methylcellulose. In certain embodiments, methylcellulose is in a suspension of about 0.1, 0.2, 0.3, 0.4, or 0.5 to about 1%. In certain embodiments, methylcellulose is in a suspension of about 0.1 to about 0.5, 0.6, 0.7, 0.8, 0.9, or 1%. In certain embodiments, methylcellulose is in a suspension of about 0.1 to about 1%. In certain embodiments, methylcellulose is in a suspension of about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.8, or 1%. In certain embodiments, methylcellulose is in a suspension of about 0.5%.
As used herein, the terms “treat” or “treatment” encompass both “preventative” and “curative” treatment. “Preventative” treatment is meant to indicate a postponement of development of a disease, a symptom of a disease, or medical condition, suppressing symptoms that may appear, or reducing the risk of developing or recurrence of a disease or symptom. “Curative” treatment includes reducing the severity of or suppressing the worsening of an existing disease, symptom, or condition. Thus, treatment includes ameliorating or preventing the worsening of existing disease symptoms, preventing additional symptoms from occurring, ameliorating or preventing the underlying systemic causes of symptoms, inhibiting the disorder or disease, e.g., arresting the development of the disorder or disease, relieving the disorder or disease, causing regression of the disorder or disease, relieving a condition caused by the disease or disorder, or stopping the symptoms of the disease or disorder.
One of ordinary skill in the art may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration. In particular, the compounds may be modified to render them more soluble in water or other vehicle. It is also well within the ordinary skill of the art to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in a patient.
The term “subject” refers to a mammalian patient in need of such treatment, such as a human.
The compounds can be administered to a subject in need of treatment for a proliferation disorder. An example of a proliferation disorder is cancer. In certain instances, the compounds are useful to treat sarcoma, epidermoid cancer, fibrosarcoma, cervical cancer, gastric carcinoma, skin cancer, leukemia, lymphoma, lung cancer, non-small cell lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, liver cancer, head and neck cancers, and pancreatic cancer.
The compounds can also be administered to a subject in need of treatment for a disease or medical condition that is mediated by a protein kinase selected from the group consisting of EGFR, EGFR (T790M), BLK, BMX/ETK, BTK, JAK1, JAK2, JAK3, TEC, TXK, FLT3, and FLT3 (D835Y). In certain instances, the compounds are useful to treat cancers, tumors, inflammatory diseases, autoimmune diseases, or immunologically related diseases. In other embodiments, such diseases are mediated by at least one kinase selected from BTK, JAK3, ITK, and BMX. In other embodiments, the cancers, tumors, inflammatory diseases, autoimmune diseases, or immunologically mediated diseases are mediated by abnormally activated B-lymphocytes, T-lymphocytes, or both. In other embodiments, the inflammatory diseases, autoimmune diseases, or immunologically mediated diseases are arthritis, rheumatoid arthritis, spondyloarthropathy, gouty arthritis, osteoarthritis, juvenile arthritis, other arthritic conditions, lupus, systemic lupus erythematosus (SLE), skin-related disease, psoriasis, eczema, dermatitis, atopic dermatitis, pain, pulmonary disorder, lung inflammation, adult respiratory distress syndrome (ARDS), pulmonary sarcoidosis, chronic pulmonary inflammatory disease, chronic obstructive pulmonary disease (COPD), cardiovascular disease, artherosclerosis, myocardial infarction, congestive heart failure, cardiac reperfusion injury, inflammatory bowel disease, Crohn's disease, ulcerative colitis, irritable bowel syndrome, asthma, Sjogren's syndrome, autoimmunity thyroid disease, urticaria (cnidosis), multiple sclerosis, scleroderma, organ transplantation rejection, heteroplastic graft, idiopathic thrombocytopenic purpura (ITP), Parkinson's disease, Alzheimer's disease, diabetic associated diseases, inflammation, pelvic inflammatory disease, allergic rhinitis, allergic bronchitis, allergic sinusitis, leukemia, lymphioma, B-cell lymphoma, T-cell lymphoma, myeloma, acute lymphoid leukemia (ALL), chronic lymphoid leukemia (CLL), acute myeloid leukemia (AML), chronic myeloid leukemia (CML), hairy cell leukemia, Hodgkin's disease, non-Hodgkin's lymphoma, multiple myeloma, myelodysplastic syndrome (MDS), myeloproliferative neoplasms (MPN), diffuse large B-cell lymphoma, follicular lymphoma, sarcoma, epidermoid cancer, fibrosarcoma, cervical cancer, gastric carcinoma, skin cancer, leukemia, lymphoma, lung cancer, non-small cell lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, liver cancer, head and neck cancers, or pancreatic cancer. In other embodiments, the diseases are autoimmune disease or transplant-induced inflammatory disorders including, but not limited to, allotransplantation, Graft versus host disease, or autoimmune diabetes.
In one aspect, the compounds and pharmaceutical compositions of the embodiments can be administered to a subject in need of treatment of a condition associated with EGFR inhibitory activity targeting substantially a mutated EGFR but not substantially the wild type EGFR. In some embodiments, the mutated EGFR comprises a T790M mutation. The present disclosure provides use of a compound of Formulae (I)-(VIII) in the preparation of a medicament for the treatment of such conditions, and the use of such compounds and salts for treatment of such conditions. In other aspects, the compounds and pharmaceutical compositions can be administered to a subject in need of treatment of a condition associated with FLT3 inhibitory activity targeting substantially a mutated FLT3 but not substantially the wild type FLT3. In some embodiments, the mutated FLT3 comprises a D835Y mutation. The present disclosure provides use of a compound of Formulae (I)-(VIII) in the preparation of a medicament for the treatment of such conditions, and the use of such compounds and salts for treatment of such conditions.
In another aspect, the present disclosure provides a method of inhibiting mutated EGFR in a cell comprising contacting the cell with an effective amount of at least one compound of Formulae (I)-(VIII) or a salt thereof, and/or with at least one pharmaceutical composition of the embodiments, wherein the contacting is in vitro, ex vivo, or in vivo. In some embodiments, the mutated EGFR comprises a T790M mutation. In another aspect, the present disclosure provides a method of inhibiting mutated FLT3 in a cell comprising contacting the cell with an effective amount of at least one compound of Formulae (I)-(VIII) or a salt thereof, and/or with at least one pharmaceutical composition comprising said compound or salt, wherein the contacting is in vitro, ex vivo, or in vivo.
In the inhibitory methods of the embodiments, an “effective amount” means an amount sufficient to inhibit the target receptor, e.g., mutated EGFR but not the wild type EGFR, or mutated FLT3 but not wild type FLT3. In some embodiments, the mutated EGFR comprises a T790M mutation. In other embodiments, the mutated FLT3 comprises a D835Y mutation. Measuring the degree of inhibition may be performed by routine analytical methods such as those described below. Such modulation is useful in a variety of settings, including in vitro assays. Other settings include ex vivo and in vivo.
In treatment methods according to the embodiments, an “effective amount” means an amount or dose sufficient to generally bring about the desired therapeutic benefit in subjects needing such treatment. Effective amounts or doses of the compounds of the embodiments may be ascertained by routine methods, such as modeling, dose escalation, or clinical trials, taking into account routine factors, e.g., the mode or route of administration or drug delivery, the pharmacokinetics of the agent, the severity and course of the infection, the subject's health status, condition, and weight, and the judgment of the treating physician. An exemplary dose is in the range of about 1 μg to 2 mg of active agent per kilogram of subject's body weight per day, preferably about 0.05 to 100 mg/kg/day, or about 1 to 35 mg/kg/day, or about 0.1 to 10 mg/kg/day. The total dosage may be given in single or divided dosage units (e.g., BID, TID, QID).
Once improvement of the patient's disease has occurred, the dose may be adjusted for preventative or maintenance treatment. For example, the dosage or the frequency of administration, or both, may be reduced as a function of the symptoms, to a level at which the desired therapeutic or prophylactic effect is maintained. Of course, if symptoms have been alleviated to an appropriate level, treatment may cease. Patients may, however, require intermittent treatment on a long-term basis upon any recurrence of symptoms. Patients may also require chronic treatment on a long-term basis.
Drug Combinations
The methods of the embodiments comprise administering an effective amount of at least one compound of Formula (I)-(VIII) or the embodiments thereof; optionally the compound may be administered in combination with one or more additional therapeutic agents, particularly therapeutic agents known to be useful for treating a proliferative disorder or cancer afflicting the subject. In some embodiments, the one or more therapeutic agents is selected from anticancer agents (such as a cell signal transduction inhibitors, mitosis inhibitors, alkylating agents, anti-metabolites, intercalating anticancer agents, topoisomerase inhibitors, immunotherapeutic agents, or antihormonal agents), steroid drugs, methotrexates, leflunomides, anti-TNFα agents, calcineurin inhibitors, and antihistaminic drugs.
The additional active ingredients may be administered in a separate pharmaceutical composition from a compound of the embodiments or may be included with a compound of the embodiments in a single pharmaceutical composition. The additional active ingredients may be administered simultaneously with, prior to, or after administration of a compound of the embodiments.
Chemical Synthesis
Exemplary chemical entities useful in methods of the embodiments will now be described by reference to illustrative synthetic schemes for their general preparation below and the specific examples that follow. Artisans will recognize that, to obtain the various compounds herein, starting materials may be suitably selected so that the ultimately desired substituents will be carried through the reaction scheme with or without protection as appropriate to yield the desired product. Alternatively, it may be necessary or desirable to employ, in the place of the ultimately desired substituent, a suitable group that may be carried through the reaction scheme and replaced as appropriate with the desired substituent. Furthermore, one of skill in the art will recognize that the transformations shown in the schemes below may be performed in any order that is compatible with the functionality of the particular pendant groups. Each of the reactions depicted in the general schemes is preferably run at a temperature from about 0° C. to the reflux temperature of the organic solvent used. Unless otherwise specified, the variables are as defined above in reference to Formula (I). One of ordinary skill in the art will also recognize that the methods described in these exemplary schemes are also applicable to the preparation of compounds of Formula (VIII), as well as compounds of Formulae (II)-(VII).
A representative synthesis for subject compounds is shown in Scheme 1.




In Scheme 1, the variables are as defined herein. As discussed below, X2a and X2b comprise a leaving group. Starting materials may be obtained from commercial sources or via well-established synthetic procedures.
Referring to Scheme 1, reaction of Compound 1-A with Compound 1-B through a nucleophilic reaction forms Compound 1-C. In Compound 1-A, the hydroxyl group is a nucleophile that can provide the ether linkage in Compound 1-C. The nucleophile can react in a nucleophilic substitution in which the nucleophile displaces a leaving group on the other reactant. In alternative embodiments, aniline or thiophenol analogs of 1-A are used to access compounds in which X1 is NH or S. In Compound 1-B, X2a comprises a leaving group. Examples of leaving groups include, but are not limited to, halo, triflate, fluorosulfonate, tosylate, or mesylate.
With continued reference to Scheme 1, reaction of Compound 1-C with Compound 1-D under conditions of Buchwald-Hartwig cross-coupling reaction provides Compound 1-E. In Compound 1-D, the amino group is a nucleophile that can provide the amino linkage in Compound 1-E. The nucleophile can react in a nucleophilic aromatic substitution in which the nucleophile displaces a leaving group on the other reactant. In Compound 1-C, X2b comprises a leaving group. Examples of leaving groups include, but are not limited to, halo, triflate, fluorosulfonate, tosylate, or mesylate.
With continued reference to Scheme 1, the nitro group in Compound 1-E is reduced to give an amino group in Compound 1-F. The reduction of nitro group can be carried out using an acid catalyst and a metal, or using a metallic catalyst under hydrogen gas. In the acid catalyst reaction, iron, zinc, lithium, sodium, or tin (typically, tin chloride) can be used as the metal, and inorganic acids such as hydrochloric acid, sulfuric acid, nitric acid, or phosphoric acid; organic carboxylic acids such as acetic acid or trifluoroacetic acid; amine acid salts such as ammonium chloride, can be used as the acid catalyst. Also, in the reduction using a metallic catalyst under hydrogen gas, palladium, nickel, platinum, ruthenium, or rhodium, can be used as the metallic catalyst.
With continued reference to Scheme 1, amidation of Compound 1-F gives a compound of Formula (I). In the amidation reaction, Compound 1-F reacts with an acryloyl derivative comprising a leaving group. Examples of leaving groups include, but are not limited to, halo, triflate, fluorosulfonate, tosylate, or mesylate. An amidation reaction can be carried out in a solvent, such as dimethylformamide or dichloromethane, in the presence of a base, such as triethylamine or diisopropylethylamine. The amidation reaction can be conducted using a coupling agent, such as for example, dicyclohexylcarbodiimide (DCC), 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC), or N-[dimethylamino-1H-1,2,3-triazole[4,5-b]-pyridin-1-ylmethylene]-N-methyl-methaneaminium (HATU) together with 1-hydroxy-1H-benzotriazole (HOBT).
In certain embodiments, a representative synthesis for subject compounds is shown in Scheme 2.




In certain embodiments, a representative synthesis for subject compounds is shown in Scheme 3.




In certain embodiments, a representative synthesis for subject compounds is shown in Scheme 4.




In certain embodiments, a representative synthesis for subject compounds is shown in Scheme 5.




Compounds in which X1 is NH are prepared according to Scheme 5-1, as shown for exemplary Compound 35.




Accordingly and as described in more detail herein, the present disclosure provides a process of preparing a compound of the present disclosure, the process involves:
reacting a compound of formula




with





thereby producing a compound of formula




wherein R3, R6, R7, R8, R10, R11, R12, R13, Q and n are defined herein and X2 is a leaving group.

Accordingly and as described in more detail herein, the present disclosure provides a process of preparing a compound of the present disclosure, the process involves:
reacting a compound of formula




with





thereby producing a compound of formula




wherein X1, R3, R6, R7, R8, R10, R11, R12, R13, R18, R19, Q and n are defined herein and X2 is a leaving group.

Accordingly and as described in more detail herein, the present disclosure provides a process of preparing a compound of the present disclosure, the process involves:
reducing the nitro group of the compound of formula




and

performing an amidation reaction with an acryloyl derivative comprising a leaving group;
thereby producing a compound of Formula (I).
Accordingly and as described in more detail herein, the present disclosure provides a process of preparing a compound of the present disclosure, the process involves:
reducing the nitro group of the compound of formula




and

performing an amidation reaction with an acryloyl derivative comprising a leaving group;
thereby producing a compound of Formula (VIII).
In certain instances, the above processes further involving the step of forming a salt of a compound of the present disclosure. Embodiments are directed to the other processes described herein; and to the product prepared by any of the processes described herein.
EXAMPLES
The following examples are offered to illustrate but not to limit the invention.
Example 1
Synthesis of Compounds 1 and 4







A synthesis of N-(3-((7-(hydroxymethyl)-2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide (Compound 4) and N-(3-((2-((4-(4-methylpiperazin-1-yl)phenyl)amino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)oxy)phenyl)acrylamide (Compound 1) and their intermediates is shown in Scheme 6 and described below.
Synthesis of 2,4-dichloro-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidine (Compound 6-B)




Sodium hydride (60%, 46.7 mg, 3.06 mmol) was added to a mixture of Compound 2-A (575 mg, 3.06 mmol) and 2-(trimethylsilyl)ethoxymethyl chloride (561 mg, 3.37 mmol) in tetrahydrofuran (5 mL) at 0° C. with stirring. The reaction mixture was allowed to warm to room temperature and stirred for 3 hours before quenching with water (5 mL). The mixture was extracted with ethyl acetate (10 mL×3). The organic layers were combined, washed with brine, dried over Na2SO4 and filtered. The filtrate was concentrated, and the crude material was purified by column chromatography (PE/EA=20/1) to give Compound 6-B (520 mg, yield 53.4%, M+H+=319.27) as a pale yellow solid.
Synthesis of 2-chloro-4-(3-nitrophenoxy)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidine (Compound 6-C)




To a mixture of Compound 6-B (200 mg, 0.628 mmol) and 3-nitrophenol (96.2 g, 0.691 mmol) in dimethylformamide (2 mL) was added K2CO3 (173.7 mg, 1.26 mmol). The reaction mixture was stirred at room temperature for 4 hours. The reaction mixture was then filtered. The filtrate was diluted with water, then extracted with ethyl acetate. The organic layer was washed with water, brine, and dried over Na2SO4. After filtration and removal of the volatiles in vacuo, the crude product was purified by flash column chromatography (PE/EA=20/1) affording Compound 6-C (200 mg, yield 75.6%, M+H+=421.92) as a white solid.
Synthesis of N-(4-(4-methylpiperazin-1-yl)phenyl)-4-(3-nitrophenoxy)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 6-D)




A mixture of Compound 6-C (150 mg, 0.356 mmol), 4-(4-methylpiperazino) aniline (70 mg, 0.356 mmol), tris(dibenzylideneacetone)dipalladium (36 mg, 0.0356 mmol), dicyclohexyl (2′,4′,6′-triisopropylbiphenyl-2-yl) phosphine (100 mg, 0.214 mmol) and potassium carbonate (197 mg, 1.424 mmol) in tert-butanol (8 mL) was stirred under argon at 80° C. overnight. After cooling to room temperature, the reaction mixture was filtered through a pad of Celite. The pad of Celite was washed with methanol and the filtrate was concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH=20/1) to give Compound 6-D (180 mg, M+H+=576.23) as yellow solid.
Synthesis of 4-(3-aminophenoxy)-N-(4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 6-E)




Compound 6-D (180 mg, 0.312 mmol) was dissolved in ethanol (6 mL) and water (2 mL) was added. Iron powder (90 mg, 1.61 mmol) and ammonium chloride (230 mg, 4.3 mmol) were then added, and the resulting mixture was heated at reflux for 3 hours. The reaction mixture was cooled to room temperature and filtered through a pad of Celite. The ethanol was removed in vacuo, and the resulting residue was basified with sodium bicarbonate and extracted with ethyl acetate. The organic layer was separated and dried using anhydrous sodium sulfate, concentrated, and purified by flash chromatography with 20:1 dichloromethane-methanol to afford Compound 6-E (170 mg, M+H+=546) as a white solid.
Synthesis of N-(3-(2-(4-(4-methylpiperazin-1-yl)phenylamino)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 6-F)




Acryloyl chloride (33.8 mg, 0.374 mmol) was added dropwise to a solution of Compound 6-E (170 mg, 0.312 mmol) and diisopropyethylamine (55 mg, 0.426 mmol) in methylene chloride (3 mL) at 0° C. The reaction mixture was stirred for 1 hour. Water was added to quench the reaction. The organic layer was washed with water, brine, and dried over Na2SO4. After filtration, removal of volatiles was performed in vacuo. The crude product was purified by flash chromatography (DCM/MeOH=20/1) afford Compound 6-F (125 mg, yield 66.9%, M+H+=600.8) as a white solid.
Synthesis of N-(3-(7-(hydroxymethyl)-2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 4)




Compound 6-F (125 mg, 0.208 mmol) in methylene chloride (3 mL) and trifluoroacetic acid (1 mL) was stirred at room temperature for 3 hours. Monitoring by thin layer chromatography indicated that all starting material had been consumed. Saturated aqueous NaHCO3 was then added to the reaction mixture at 0° C. The reaction mixture was extracted with methylene chloride. The organic layer was washed with water, brine, dried over Na2SO4 and filtered. The filtrate was concentrated and the crude material was purified by column chromatography (DCM/MeOH=20/1) to give Compound 4 (70 mg, yield 71.5%, M+H+=500.5) as a white solid.
Synthesis of N-(3-(2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 1)




A solution of Compound 4 (100 mg, 0.2 mmol) in methanol (2 mL) was saturated with ammonia. The reaction mixture was stirred overnight at room temperature. Monitoring by LC-MS indicated that all starting material had been consumed. The solvent was concentrated and the crude material was purified by column chromatography (DCM/MeOH=20/1) to give Compound 1 (60 mg, yield 63.8%, M+H+=470.5) as a pale yellow solid.
Example 2
Synthesis of Compounds 2 and 5







A synthesis of N-(3-(7-(hydroxymethyl)-2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 5) and N-(3-(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 2) and their intermediates is shown in Scheme 7 and described below.
Synthesis of N-(6-(4-methylpiperazin-1-yl)pyridin-3-yl)-4-(3-nitrophenoxy)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 7-B)




Compound 7-B (yield 62% from 3, M+H+=577.3) was prepared according to the procedure of Compound 6-D using 3-amino-6-(4-Methyl-1-piperazinyl)pyridine hydrochloride instead of 4-(4-Methylpiperazino) aniline.
Synthesis of 4-(3-aminophenoxy)-N-(6-(4-methylpiperazin-1-yl)pyridin-3-yl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 7-C)




Compound 7-C (yield 80% from Compound 7-B, M+H+=547.3) was prepared according to the procedure of Compound 6-E.
Synthesis of N-(3-(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 7-D)




Compound 7-D (yield 67% from Compound 7-C, M+H+=601.3) was prepared according to the procedure of Compound 6-F.
Synthesis of N-(3-(7-(hydroxymethyl)-2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 5)




Compound 7-E (yield 70% from Compound 5, M+H+=501.6) was prepared according to the procedure of Compound 4.
Synthesis of N-(3-(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 2)




Compound 2 (yield 62% from Compound 5, M+H+=471.5) was prepared according to the procedure of Compound 1.
Example 3
Synthesis of Compounds 3 and 6







A synthesis of N-(3-(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7-(hydroxymethyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 6) and N-(3-(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 3) and their intermediates is shown in Scheme 8 and described below.
Synthesis of N-(3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)-4-(3-nitrophenoxy)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 8-B)




Compound 8-B (yield % from Compound 8-A, M+H+=594.3) was prepared according to the procedure of Compound 6-D using 3-fluoro-4-(4-methylpiperazin-1-yl)aniline instead of 4-(4-methylpiperazino) aniline.
Synthesis of 4-(3-aminophenoxy)-N-(3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 8-C)




Compound 8-C (yield 85% from Compound 8-B, M+H+=564.3) was prepared according to the procedure of Compound 6-E.
Synthesis of N-(3-(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 8-D)




Compound 8-D (yield 75% from Compound 8-C, M+H+=618.3) was prepared according to the procedure of Compound 6-F.
Synthesis of N-(3-(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7-(hydroxymethyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 6)




Compound 6 (yield 78% from Compound 8-D, M+H+=518.6) was prepared according to the procedure of Compound 4.
Synthesis of N-(3-(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 3)




Compound 3 (yield 83% from Compound 6, M+H+=488.5) was prepared according to the procedure of Compound 1.
Example 4
N-(3-(7-(2-fluoroethyl)-2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 7)







A synthesis of N-(3-(7-(2-fluoroethyl)-2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 7) and its intermediates is shown in Scheme 9 and described below.
Synthesis of 2,4-dichloro-7-(2-fluoroethyl)-7H-pyrrolo[2,3-d]pyrimidine (Compound 9-B)




Sodium hydride (60%, 424 mg, 10.6 mmol) was added to a mixture of Compound 9-A (1 g, 5.3 mmol) and BrCH2CH2F (1.519 g, 11.9 mmol) in acetonitrile (10 mL) at room temperature. The reaction mixture was stirred for 4 hours before quenching with water and then extracted with ethyl acetate. The organic layer was washed with brine, dried over Na2SO4 and filtered. The filtrate was concentrated and the crude material was purified by column chromatography (PE/EA=20/1) to give Compound 9-B (1.1 g, yield 90%, M+H+=234.0) as a pale yellow solid.
Synthesis of 2-chloro-7-(2-fluoroethyl)-4-(3-nitrophenoxy)-7H-pyrrolo[2,3-d]pyrimidine (Compound 9-C)




Compound 9-C (yield 82% from Compound 9-B, M+H+=337.0) was prepared according to the procedure of Compound 6-C.
Synthesis of 7-(2-fluoroethyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-4-(3-nitrophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 9-D)




Compound 9-D (yield 73% from Compound 9-C, M+H+=492.2) was prepared according to the procedure of Compound 6-D.
Synthesis of 4-(3-aminophenoxy)-7-(2-fluoroethyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (Compound 9-E)




Compound 9-E (yield 81% from Compound 9-D, M+H+=462.2) was prepared according to the procedure of Compound 6-E.
Synthesis of N-(3-(7-(2-fluoroethyl)-2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 7)




Compound 7 (yield 77% from Compound 9-E, M+H+=516.6) was prepared according to the procedure of Compound 6-F.
Example 5
Synthesis of N-(3-(2-(4-(1-(2-fluoroethyl)azetidin-3-ylamino)-2-methoxyphenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 34)




Synthesis of tert-butyl 3-(3-methoxy-4-nitrophenylamino)azetidine-1-carboxylate




Into a 100 mL 3-Neck round-bottomed flask equipped with reflux condenser were charged 4-fluoro-2-methoxy-1-nitrobenzene (4.086 g) and tert-butyl 3-aminoazetidine-1-carboxylate (4.4 g), triethylamine (9.6 mL), and dimethyl sulfoxide (20 mL). The reaction mixture was heated at 95° C. for 8 hours. The reaction mixture was poured into water (200 mL) and extracted with ethyl acetate (50 mL×3). The organic layer was washed with brine (50 mL×2), dried over sodium sulfate, and concentrated completely under reduced pressure at 40° C. to give the title compound (9 g) which was used without further purification.
Synthesis of N-(3-methoxy-4-nitrophenyl)azetidin-3-amine




To tert-butyl 3-(3-methoxy-4-nitrophenylamino)azetidine-1-carboxylate (9 g) was added TFA (18 mL) at room temperature. The reaction mixture was stirred for 15 min at room temperature and then was concentrated under reduced pressure at 40° C. to give the title compound as TFA salt (7.24 g).
Synthesis of 1-(2-fluoroethyl)-N-(3-methoxy-4-nitrophenyl)azetidin-3-amine




To N-(3-methoxy-4-nitrophenyl)azetidin-3-amine (3 g) were added Cs2CO3 (12 g) and 1,2-bromofluoroethane (1.5 g) in DMF (30 mL). The reaction mixture was heated at 50° C. for 8 h. The reaction mixture was poured in water and extracted in ethyl acetate (100 mL×3). The organic layer was washed with brine (100 mL×2), dried over sodium sulfate, and concentrated under reduced pressure. The crude material was purified by column chromatography (DCM/MeOH=50/1 as elution) to give the title compound (1.35 g, yield 51% over 3 steps) as a yellow solid.
Synthesis of N1-(1-(2-fluoroethyl)azetidin-3-yl)-3-methoxybenzene-1,4-diamine




A solution of 1-(2-fluoroethyl)-N-(3-methoxy-4-nitrophenyl)azetidin-3-amine (2.6 g) and Pd/C (1 g) in 1,4-dioxane (50 mL) was hydrogenated for 4 hours at room temperature. The reaction mixture was filtered through diatomaceous earth, washing with MeOH. The filtrate was concentrated and purified by column chromatography (DCM/MeOH=50/1 as elution) to provide the title compound (1.57 g, yield 68%, M+H+=240.2).
Synthesis of (2-(4-(1-(2-fluoroethyl)azetidin-3-ylamino)-2-methoxyphenylamino)-4-(3-nitrophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)methyl pivalate (Compound 34-A)




A mixture of N1-(1-(2-fluoroethyl)azetidin-3-yl)-3-methoxybenzene-1,4-diamine (870 mg, 3.64 mmol) and (2-chloro-4-(3-nitrophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)methyl pivalate (1.55 g, 3.83 mmol), potassium carbonate (1.35 g, 9.77 mmol), tris(dibenzylideneacetone)dipalladium (173 mg, 0.19 mmol) and dicyclohexyl (2′,4′,6′-triisopropylbiphenyl-2-yl)phosphine (222 mg, 0.47 mmol), a magnetite, and t-BuOH (35 mL) was heated to reflux and stirred under nitrogen for 2 h. The mixture was cooled to 40-50° C. and was filtered through diatomaceous earth, washing with ethyl acetate (50 mL). The filtrate was concentrated under reduced pressure. The crude material was purified by column chromatography (DCM/MeOH=50/1 as elution) to give the title compound (1.7 g, yield 74%, M+H+=608.3) as a light yellow solid.
Synthesis of N1-(4-(3-aminophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-2-yl)-N4-(1-(2-fluoroethyl)azetidin-3-yl)-2-methoxybenzene-1,4-diamine




A mixture of (2-(4-(1-(2-fluoroethyl)azetidin-3-ylamino)-2-methoxyphenylamino)-4-(3-nitrophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-7-yl)methyl pivalate (530 mg, 0.87 mmol), NH2NH2—H2O (98%, 2.5 mL), Pd/C (110 mg), a magnetite, and MeOH (10 mL) was stirred at reflux temperature overnight. The mixture was cooled to room temperature, and was filtered through diatomaceous earth, washing with MeOH (20 mL). The filtrate was concentrated under reduced pressure. NaHCO3(aq) was added, and the mixture was extracted with ethyl acetate (30 mL×3). The combined organic layers were concentrated under reduced pressure. The crude material was purified by column chromatography (DCM/MeOH=40/1 as elution) to give the title compound (125 mg, yield 31%, M+H+=464.2) as a white solid.
Synthesis of N-(3-(2-(4-(1-(2-fluoroethyl)azetidin-3-ylamino)-2-methoxyphenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (Compound 34)




A 50 mL-round-bottom flask with a magnetite was charged with N1-(4-(3-aminophenoxy)-7H-pyrrolo[2,3-d]pyrimidin-2-yl)-N4-(1-(2-fluoroethyl)azetidin-3-yl)-2-methoxybenzene-1,4-diamine (125 mg, 0.27 mmol), diisopropylethylamine (43 mg, 0.33 mmol) and DCM (20 mL). The mixture was cooled with an ice bath until the temperature was below 0° C., and a solution of acryloyl chloride (33 mg, 0.33 mmol) in THF (2 mL) was added dropwise over 5 minutes. The title compound is isolated and purified by preparative HPLC or preparative LC/MS, or by other standard purification techniques. In some experiments, the title compound was isolated and purified by preparative LC/MS.
Compound 34 was also synthesized using an alternative synthetic route below:




The Synthesis of Compound 34-B:

To compound 34-A (0.6 g) in a 100 ml round-bottom flask, Fe power (0.3 g) and NH4Cl (0.5 g) in EtOH (60 mL) were added. The reaction mixture was stirred at 90 ̃100 for 3 ̃4 h. At this point, the reaction was completed indicated by TLC (DCM:MeOH=8:1). The reaction mixture was filtered through celite, and washed further with MeOH ( ̃60 mL). The combined filtrate was concentrated down under reduced pressure. The residue (oil) was dissolve in ethyl acetate (100 mL), washed with brine (50 mL×2) and dried over sodium sulfate. The organic layer was concentrated down under reduced pressure. The obtained crude was further purified with column chromatography (DCM: MeOH=30:1) to yield the desired product 34-B (420 mg, M+H+=578.5).
The Synthesis of Compound 34-C:
To compound 34-B (288 mg) in a 100 ml round-bottom flask, acrylic acid (41 mg) and EDCI (176 mg), in DCM (30 mL) were added. The reaction mixture was stirred at 0° C. (ice-bath) for 1 ̃1.5 h. At this point, TLC (DCM:MeOH=7:1) showed the completion of the reaction. A small amount of water (0.5 mL) was added to quench the reaction. The reaction mixture was concentrated under reduced pressure. The obtained residue was dissolve in ethyl acetate (30 mL). The organic layer was washed with brine (10 mL×2), dried over sodium sulfate and concentrated down under reduced pressure to yield the crude product, which was further purified with column chromatography (DCM:MeOH=30:1) to yield the desired product 34-C (79 mg, M+H+=632.5).
The Synthesis of Compound 34:
To compound 34-C (79 mg) in MeOH (15 mL) in a 100 ml round-bottom flask, NaOH aqueous solution (2.5 mol/L) was added. The reaction mixture was stirred at 0° C. (ice-bath) for 4 ̃5 h. At this point, LC-MS indicated the completion of the reaction. The reaction mixture was poured into water (100 mL), extracted with ethyl acetate (50 mL×3). The organic layer was washed with brine (30 mL×2), dried over sodium sulfate and concentrated down under reduced pressure. The crude was further purified with column chromatography (DCM:MeOH=25:1) to yield the desired product 34 (32 mg, M+H+=464.5).
Additional exemplary compounds not shown in these synthetic examples are prepared from appropriate starting materials using methods analogous to those described in the preceding schemes and examples.
Biological Example A
In Vitro Cell-Based Screening Using Real-Time Cell Electronic Sensing (RT-CES) System
Some assays and examples demonstrating the anti-cancer effects of the compounds of the embodiments are described as below.
The pyrrolopyrimidine compounds in the embodiments are developed for the anticancer activities for cancer cells with certain molecular targets, i.e., EGFR (epidermal growth factor receptor). The anticancer efficacy of the pyrrolopyrimidine compounds may be preliminarily screened in vitro using a panel of EGFR cancer cell lines by real time electronic cell sensing (RT-CES) system from ACEA Biosciences, Inc. (or xCELLigence system from Roche Applied Sciences/ACEA Biosciences Inc.), which provides dynamic cell response information after exposing to an anticancer agent.
The details of this cell electronic sensing technology, called real-time cell electronic sensing (RT-CES®) and associated devices, systems and methods of use are described in U.S. Pat. No. 7,732,127; U.S. Pat. No. 7,192,752; U.S. Pat. No. 7,459,303; U.S. Pat. No. 7,468,255; U.S. Pat. No. 7,470,533; U.S. Pat. No. 7,560,269; U.S. provisional application No. 60/397,749, filed on Jul. 20, 2002; U.S. provisional application No. 60/435,400, filed on Dec. 20, 2002; U.S. Provisional application 60/469,572, filed on May 9, 2003, PCT application number PCT/US03/22557, filed on Jul. 18, 2003; PCT application number PCT/US03/22537, filed on Jul. 18, 2003; PCT application number PCT/US04/37696, filed on Nov. 12, 2004; PCT application number PCT/US05/04481, filed on Feb. 9, 2005; U.S. patent application Ser. No. 10/705,447, filed on Nov. 10, 2003; U.S. patent application Ser. No. 10/705,615, filed on Nov. 10, 2003; U.S. patent application Ser. No. 10/987,732, filed on Nov. 12, 2004; U.S. patent application Ser. No. 11/055,639, filed on Feb. 9, 2005, each of which is incorporated by reference. Additional details of RT-CES technology is further disclosed in U.S. provisional application No. 60/519,567, filed on Nov. 12, 2003, and U.S. provisional application No. 60/542,927, filed on Feb. 9, 2004, U.S. provisional application No. 60/548,713, filed on Feb. 27, 2004, U.S. provisional application No. 60/598,608, filed on Aug. 4, 2004; U.S. provisional application No. 60/598,609, filed on Aug. 4, 2004; U.S. provisional application No. 60/613,749, filed on Sep. 27, 2004; U.S. provisional application No. 60/613,872, filed on Sep. 27, 2004; U.S. provisional application No. 60/614,601, filed on Sep. 29, 2004; U.S. provisional application No. 60/630,071, filed on Nov. 22, 2004; U.S. provisional application No. 60/630,131, filed on Nov. 22, 2004, each of which is incorporated herein by reference.
For measurement of cell-substrate or cell-electrode impedance using RT-CES technology, microelectrodes having appropriate geometries are fabricated onto the bottom surfaces of microtiter plate or similar device, facing into the wells. Cells are introduced into the wells of the devices, and make contact to and attach to the electrode surfaces. The presence, absence or change of properties of cells affects the electronic and ionic passage on the electrode sensor surfaces. Measuring the impedance between or among electrodes provides information about biological status of cells present on the sensors. When there are changes to the biological status of the cells analogue, electronic readout signals are measured automatically and in real time, and are converted to digital signals for processing and analysis.
In a RT-CES system, a cell index is automatically derived and provided based on measured electrode impedance values. The cell index obtained for a given well reflects: 1) how many cells are attached to the electrode surfaces in this well; and 2) how well cells are attached to the electrode surfaces in this well. Thus, the more the cells of same type in similar physiological conditions attach the electrode surfaces, the larger the cell index. And, the better the cells attach to the electrode surfaces (e.g., the cells spread-out more to have larger contact areas, or the cells attach tighter to electrode surfaces), the larger the cell index. We have found that the cMet-addictive cell lines would produce a transient impedance response profile when treated with positive-control EGFR (epidermal growth factor receptor) inhibitors.
Through the use of the RT-CES system, the pyrrolopyrimidine compounds described in the examples above have been shown to produce a similar cell response impedance profile on RT-CES system to that generated by positive control inhibitors. In addition, these compounds have been shown to inhibit EGFR (epidermal growth factor receptor)-induced cell migration in several cell lines. In addition, these compounds have shown no or negligible effects when they were used to treat non-cMet addictive cancer cell lines.
The RT-CES system (or xCELLigence RTCA system) comprises three components, an electronic sensor analyzer, a device station and 16× or 96× microtiter plate devices (i.e. E-Plate 16 or E-Plate 96). Microelectrode sensor array was fabricated on glass slides with lithographical microfabrication methods and the electrode-containing slides are assembled to plastic trays to form electrode-containing wells. Each 16× (or 96×) microtiter plate device used in RT-CES system comprises up to 16 (or 96) such electrode-containing wells. The device station receives the 16× or 96× microtiter plate devices and is capable of electronically switching any one of the wells to the sensor analyzer for impedance measurement. In operation, the devices with cells cultured in the wells are placed into a device station (xCELLigence RTCA SP station or RT-CES SP station) that is located inside an incubator. Electrical cables connect the device station to the sensor analyzer (xCELLigence RTCA analyzer or RT-CES analyzer). Under the RT-CES or xCELLigence RTCA software control, the sensor analyzer can automatically select wells to be measured and continuously conduct impedance measurements. The impedance data from the analyzer is transferred to a computer, analyzed and processed by the integrated software.
Impedance measured between electrodes in an individual well depends on electrode geometry, ionic concentration in the well and whether there are cells attached to the electrodes. In the absence of the cells, electrode impedance is mainly determined by the ion environment both at the electrode/solution interface and in the bulk solution. In the presence of the cells, cells attached to the electrode sensor surfaces will alter the local ionic environment at the electrode/solution interface, leading to an increase in the impedance. The more cells there are on the electrodes, the larger the increase in cell-electrode impedance. Furthermore, the impedance change also depends on cell morphology and the extent to which cells attach to the electrodes.
To quantify cell status based on the measured cell-electrode impedance, a parameter termed Cell Index is derived, according to




  
    C
    ⁢
    
      
    
    ⁢
    I
  
  =
  
    
      max
      
        
          i
          =
          1
        
        ,
        ...
        ,
        N
      
    
    ⁢
    
      (
      
        
          
            
              R
              cell
            
            ⁡
            
              (
              
                f
                i
              
              )
            
          
          
            
              R
              b
            
            ⁡
            
              (
              
                f
                i
              
              )
            
          
        
        -
        1
      
      )
    
  




where Rb(f) and Rcell(f) are the frequency dependent electrode resistances (a component of impedance) without cells or with cell present, respectively. N is the number of the frequency points at which the impedance is measured. Thus, Cell Index is a quantitative measure of the status of the cells in an electrode-containing well. Under the same physiological conditions, more cells attached on to the electrodes leads to larger Rcell(f) value, leading to a larger value for Cell Index. Furthermore, for the same number of cells present in the well, a change in the cell status such as morphology will lead to a change in the Cell Index. For example, an increase in cell adhesion or cell spreading leads to larger cell-electrode contact area which will lead to an increase in Rcell(f) and thus a larger value for Cell Index. The Cell Index may also be calculated using a formula different from the one described here. Other methods for calculating the Cell Index based on impedance measurement can be found in U.S. Pat. No. 7,732,127; U.S. Pat. No. 7,192,752; U.S. Pat. No. 7,459,303; U.S. Pat. No. 7,468,255; U.S. Pat. No. 7,470,533; U.S. Pat. No. 7,560,269; PCT application number PCT/US04/37696, fined on Nov. 12, 2004, PCT application number PCT/US05/04481, filed on Feb. 9, 2005, U.S. patent application Ser. No. 10/987,732, filed on Nov. 12, 2004, and U.S. patent application Ser. No. 11/055,639, filed on Feb. 9, 2005.

Biological Example B-1
Bioactivity of Pyrrolopyrimidine Compounds on EGFR Mutated Cell Lines
Material and Methods
Cell Culture and Reagents
All cell lines were obtained from the American Type Culture Collection and were maintained at 37° C. with 5% CO2, in media supplemented with 10% fetal bovine serum and 1% L-glutamine-penicillin-streptomycin. H1975 and HCC827 cells were cultured with RPMI 1640 media. A431 cells were maintained in Dulbecco's Modification of Eagle's Medium EGF (R&D), EGF inhibitors were resuspended and stored according to the manufacturers' instructions.
Cell Proliferation and Growth Inhibition Assay
Cell proliferation was assessed by WST assay (Roche, Indianapolis, Ind.) per the manufacturer's instructions. The H1975, HCC827 and A431 cells were seeded at 3,000, 3,000 and 4,000 cells per well onto 96-well plates, and after a 24-hour incubation, the cells were treated with test compounds for 72 hours. Cell viability was assayed by incubating the cells with WST-1 reagent for 2 hours, and then with the measurement of the absorbance at a wavelength of 450 nm. The data was calculated using GraphPad Prism version 4.0. The IC50 values were fitted using a non-linear regression model with a sigmoidal dose response.
Western Blotting
H1975 and A431 cells were seeded onto 6-well plates at a concentration of 1×106 cells per well. After 24 hours of growth in serum-containing media, cells were incubated in serum-free media for 1 hour, and then treated with test compound for 2 hour. A431 cells were stimulated with 30 ng/mL EGF during the last 20 minutes of compound treatment. Western blots were done on the whole-cell extracts using phospho-specific EGFR (pY1068), total EGFR, phospho-Akt (Ser-473), total Akt, phospho-ERK1/2 (pT202/pY204) and total ERK1/2 antibodies (Cell Signaling Technology).
Tumor sections were snap-frozen in liquid nitrogen for protein isolation, and EGFR signal transduction was evaluated by Western blot with primary antibodies included the following: phospho-specific EGFR (pY1068), total EGFR, phospho-Akt (Ser-473), total Akt, phospho-ERK1/2 (pT202/pY204) and total ERK1/2.
ELISA Assay
H1975 and A431 cells were seeded onto each well of a 96-well plate at a density of 4×104 cells per well. After 24 hours of growth in serum-containing media, cells were treated with test compound in serum-free medium for 2 hours. A431 cells were stimulated with 30 ng/mL EGF during the last 15 minutes of compound treatment. Cells were washed with ice cold PBS before extraction with 100 μl per well cell lysis buffer. Phosphorylation of EGFR was measured using a sandwich ELISA assay with the pair of phospho-specific EGFR (pY1068) and total EGFR antibodies.
Results
Compound 3 Inhibits Proliferation of EGFR-Mutant Cells
The following compounds were tested.




Sensitivity of cancer cell lines that express EGFR WT, Exon 19 Del, L858R/T790M and delE746-A750 to Compound 3, Compound B and gefitinib. Cell proliferation assays were performed with increasing concentrations of compounds for 72 hours using WST. IC50 values were determined by GraphPad software. Compound 3 inhibits proliferation of the T790M-positive H1975 cells more potently than gefitinib.










TABLE 1






H1975 cell
A431 cell
HCC827 cell


Compound
(T790M/L858R)
(WT)
(delE746-A750)



















Compound 3
0.61 
μM
10.8 μM
0.019 μM


Compound B
1.1 
μM
 4.5 μM
0.013 μM


Gefitinib
>10 
μM
ND
0.024 μM









Compound 3 Inhibits EGFR Phosphorylation in H1975 Cells
Inhibition of EGFR phosphorylation and proliferation in H1975 cells treated with Compound 3. H1975 and A431 cells were incubated with various concentrations of Compound 3 or Compound B for 2 hours, and the whole cell extracts were directly harvested and tested for pEGFR by ELISA. IC50 values were determined by GraphPad software.











TABLE 2








H1975 cell
A431 cell



Compound
(T790M/L858R)
(WT)









Compound 3
0.031 μM
12.7 μM



Compound B
0.063 μM
 8.9 μM










Compound 3 Inhibits the EGFR Signaling Pathway in H1975 Cells
Exponentially growing H1975 lung cancer cells were treated with Compound 3 at indicated concentrations for 2 hours in serum-free medium. As shown in FIG. 1, whole cell extracts were resolved by SDS-PAGE before blotting onto nitrocellular membranes. Inhibition of phosphorylation of EGFR leads to inhibition of its downstream effectors p-Akt and p-ERK. All antibodies were obtained from Cell Signaling.
Compound 3 Inhibits the EGFR Signaling Pathway in H1975 Tumors
Compound 3 was administered PO at 100 mg/kg, and tumors were harvested at 1, 4, 8, 18 and 25 hours after the single dose. As shown in FIG. 2, immunoblots were probed for pEGFR, total EGFR, pAkt, total Akt, p-ERK and total ERK. Compound 3 inhibited the phosphorylation of EGFR in a time-dependent manner, and the inhibition at EGFR leads to the inhibition of its downstream effectors p-Akt and p-ERK.
Comparison Between Compound 3 and Compound A
1. WST Result










TABLE 3






H1975 cell
A431 cell
HCC827 cell


Compound
(T790M/L858R)
(WT)
(delE746-A750)







Compound 3
0.73 μM
0.62 μM
0.011 μM


Compounds A
1.63 μM
4.17 μM
0.023 μM









2. ELISA Result










TABLE 4








H1975 cell



H1975 cell
A431 cell
(T790M/L858R)


Compound
(T790M/L858R)
(WT)
EGF stimulate







Compound 3
0.0032 μM
0.4737 μM
0.025 μM


Compound A
0.0088 μM
1.0270 μM
0.091 μM









Biological Example B-2
Cell Culture and Reagents
All cell lines were obtained from the American Type Culture Collection and were maintained at 37° C. with 5% CO2, in media supplemented with 10% fetal bovine serum and 1% L-glutamine-penicillin-streptomycin. H1975 and HCC827 cells were cultured with RPMI 1640 media. A431 cells were maintained in Dulbecco's Modification of Eagle's Medium GTL-16 cells, T47D cells and BxPC3 cells were cultured with RPMI 1640 media. NIH-3T3 cells, H460 cells and HepG2 cells were cultured with Dulbecco's Modification of Eagle's Medium A549 cells were cultured with F-12K Nutrient Mixture media. H295R were cultured with DMEM: F12 Media. WST-1 reagent was obtained from Roche. EGF (R&D), EGF inhibitors were resuspended and stored according to the manufacturers' instructions.
Cell Proliferation and Growth Inhibition Assay
Cell proliferation was assessed by WST assay (Roche, Indianapolis, Ind.) per the manufacturer's instructions. The H1975, HCC-827 and A431 cells were seeded at 3,000, 3,000 and 4,000 cells per well onto 96-well plates, and after a 24 h incubation, the cells were treated with test compounds for 72 hrs. NIH-3T3 cells, A549 cells, H295R cells, GTL-16 cells, H460 cells, HepG2 cells, Hela cells, T47D cells and BxPC3 cells were seeded at 2,000, 2,000, 5,000, 5,000, 2,500, 5,000, 2,000, 5,000 and 5,000 cells per well onto 96-well plates. Cell viability was assayed by incubating the cells with WST-1 reagent for 3 hrs. Absorbance was measured at OD450-620 using the Beckman DTX880. The data was calculated using GraphPad Prism version 4.0. The IC50 were fitted using a non-linear regression model with a sigmoidal dose response.
ELISA Assays
The H1975, HCC-827 and A431 cells were seeded onto a 96-well plate at a density of 40,000, 40,000 and 60,000 cells per well respectively. After 24 h of growth in serum-containing media, cells were treated with test compound in serum-free medium for 2 h. A431 cells were stimulated with 50 ng/mL EGF during the last 15 min of compound treatment. Cells were washed with ice cold PBS before extraction with 100 μl per well cell lysis buffer. Phosphorylation of EGFR was measured using a sandwich ELISA assay with the pair of phospho-specific EGFR (pY1068) and total EGFR antibodies. The data was calculated using GraphPad Prism version 4.0. The IC50 were fitted using a non-linear regression model with a sigmoidal dose response.
Western Blotting
H1975, HCC-827 and A431 cells were seeded onto 6-well plates at a concentration of 1×106 cells per well. After 24 h of growth in serum-containing media, cells were incubated in serum-free media for 1 h, and then treated with test compound for 2 h. A431 cells were stimulated with 30 ng/mL EGF during the last 20 min of compound treatment. Western blots were performed on the whole-cell extracts using phospho-specific EGFR (pY1068), total EGFR, phospho-Akt (Ser-473), total Akt, phospho-ERK1/2 (pT202/pY204) and total ERK1/2 antibodies (Cell Signaling Technology). The density of blotting band was acquired using ImageJ software, and the IC50 of EGFR Tyr1068 phosphorylation was fitted using a non-linear regression model by GraphPad Prism version 4.0.
Compound 3 was orally administered at indicated dose (12.5, 50, 200 mg/kg), and Gefitinib (GF) was orally administrated at 100 mg/kg. The tumor tissues were harvested at 1, 4, 8, and 24 h at Day 1 and after the single dose, or harvested at Day 8 and after 8 consecutive doses for dose (12.5, 50 mg/kg). Tumor sections were snap-frozen in liquid nitrogen for protein isolation, and EGFR signal transduction was evaluated by Western blot with primary antibodies included the following: phospho-specific EGFR (pY1068), total EGFR.
Cell-Based Pulse Chase Assay for Irreversibility Assessment of Compound
The H1975 was seeded at 3000 cell per well in RTCA system (xCELLigence SP instrument, ACEA Biosciences). After one day culture, cell were treated with compound of compound 3, WZ4002 at concentration of 10 μM for 22 hrs then removed compared with drugs kept overtime. About 60 hours after recovery, cell subject to WST viability measuring.
Results
Compound 3 Inhibited the Proliferation of EGFR Mutation Harboring Cancer Cells.
Compound 3 achieved the inhibition of the proliferation of H1975 (T790M/L858R) cells with the IC50 at 91±60 nM, and with IC50 at 19±8 nM for HCC827(Del E746-A750) cells, whereas the sensitivity to A431(WT) cells is much lower (IC50, 2113±1660 nM). In contrast, gefitinib, the first generation EGFR inhibitor, exhibited sensitivity to A431 cells, but had no activity on inhibiting the proliferation of T790M mutation harboring cells (IC50>20 uM).














H1975 cell
A431 cell
HCC827 cell


Compound
(T790M/L858R)
(WT)
(delE746-A750)


















Compound 3
 91 ± 60 nM
2113 ± 1660 nM
19 ± 8 nM


WZ4002
1905 ± 732 nM
4393 ± 617 nM 
 35 ± 12 nM


Gefitinib
>20000 nM
523 ± 115 nM
 9 ± 1 nM









Compound 3 Significantly Reduced the EGFR Tyr1068 Phosphorylation in EGFR Mutant Cells

H1975 and A431 cells were incubated with various concentrations of compound 3 or WZ4002 for 2 h, and the whole cell extracts were directly harvested and tested for pEGFR by ELISA. IC50 values were determined by GraphPad software.
The cell-based ELISA assays verified that compound 3 significantly reduced the EGFR Tyr1068 phosphorylation in the EGFR mutant cell lines, while Gefitinib showed inhibition of the phosphorylation to a much less extent.
















H1975 cell
A431 cell



Compound
(T790M/L858R)
(WT)









compound 3
4 ± 2 nM
650 ± 63 nM



WZ4002
32 ± 12 nM
 970 ± 340 nM










As shown in the table below, Compound 3 significantly reduced the EGFR Tyr1068 phosphorylation and downstream signaling in the EGFR mutant cells, and is less effective in cell line expressing wild-type EGFR.














IC50 (nM) by WB (Tyr1068 phospho)











EGFR genotype
Cell line
compound 3
Gefitinib
WZ4002














T790M/L858R
H1975
4.4
860
21


DelE746-A750
HCC-827
9.8
5.4
58


Wild Type
A431
288
1.6
53










Selectivity (A431/H1975)
65X
0.002X
2.5X









As shown in FIGS. 9A and 9B, Compound 3 inhibited EGFR-Tyr1068 phosphorylation and downstream signaling in H1975 EGFR mutant cells. Comparative data for Gefitinib and WZ4002 are shown in FIGS. 9C-9F.
As shown in FIGS. 10A and 10B, Compound 3 inhibited EGFR-Tyr1068 phosphorylation and downstream signaling in HCC-827 EGFR mutant cells. Comparative data for Gefitinib and WZ4002 are shown in FIGS. 10C-10F.
As shown in FIGS. 11A and 11B, Compound 3 was less effective on inhibiting EGFR-Tyr1068 phosphorylation and downstream signaling in A431 cells expressing WT EGFR. Comparative data for Gefitinib and WZ4002 are shown in FIGS. 11C-11F.
Compound 3 Inhibited the Phosphorylation of the EGFR in H1975 Tumors.
Compound 3 significantly inhibited the phosphorylation of the EGFR in H1975 tumor tissues, at all three dosages of 12.5, 50 and 200 mg/kg. The inhibition of EGFR phosphorylation by Compound 3 was dose- and time-dependent. In contrast, the inhibition of the phosphorylation of the EGFR was not detected for gefitinib with the dosage at 100 mg/kg.
As shown in FIG. 12, Compound 3 inhibits the phosphorylation of the EGFR in H1975 tumor tissues at single-dose of compound 3.
As shown in FIG. 13, Compound 3 inhibits the phosphorylation of the EGFR in H1975 tumor tissues after 8 consecutive doses of compound 3.
As shown in FIG. 14, Compound 3 irreversibly inhibited the proliferation of H1975 cells harboring EGFR T790M mutation. The reversibility of compound 3 was assessed by a cell-based pulse chase assay. As shown in FIG. 14, upon compound 3 withdrawal following a 22-hr treatment, the inhibition of the proliferation of H1975 sustained (7.8±1.3%) up to 60 hrs. In contrast, the recovery from WZ4002 treatment was at 27±10%. The results of this study demonstrated that compound 3 is an irreversible inhibitor of EGFR, and exhibited strong binding property than WZ4002.
Viability in Comparison with Vehicle Control (%)
















compound 3 
WZ4002 




for 22 hr
for 22 hr




treatment
treatment









Viability of H1975
7.8 ± 1.3
27 ± 10



cells (%)












1. WST Result















H1975 cell
A431 cell
HCC827 cell


Compound
(T790M/L858R)
(WT)
(delE746-A750)







compound 3
0.19 uM
 2.03 uM
0.011 uM


compound A
1.16 uM
11.82 uM*
0.023 uM





*Note:


The A431 value for Compound A was previously reported incorrectly as 9.14 uM.






2. ELISA Result
















A431 cell 




H1975 cell
(WT) EGF
H1975 cell


Compound
(T790M/L858R)
stimulate
(T790M/L858R)







compound 3
0.0032 uM
0.4737 uM
0.025 uM


compound A
0.0088 uM
1.0270 uM
0.091 uM









Biological Example B-3
Using a new H1975 cell line and the ELISA protocol described above in the Biological Example B-2) results were obtained as below:










ELISA Assay













IC50 (uM)
IC50 (uM)






H1975
Hcc827
IC50 (uM)





T790M/L858R
(delE746-A750)
A431 WT
Selectivity
Selectivity



(no EGF
(no EGF
(EGF
A431/
A431/



stimulation)
stimulation)
stimulation)
H1975
Hcc827





Cpd 3
0.0018
0.0076
0.1233
68.5000
16.2237



0.0016
0.0072
0.1300
81.2500
18.0556



0.0010
0.0072
0.0901
90.1000
12.5139


Ave ± SD
0.0015 ± 0.0004
0.0073 ± 0.0002
0.1145 ± 0.0174
79.9500 ± 10.8585
15.5977 ± 2.8233


Cpd B
0.0299
0.0419
0.6184
20.6823
14.7589


(WZ4002)
0.0257
0.0385
0.6592
25.6498
17.1221



0.0212
0.0391
0.6097
28.7594
15.5934


Ave ± SD
0.0256 ± 0.0043
0.0399 ± 0.0018
0.6291 ± 0.0264
25.0305 ± 4.0740 
15.8248 ± 1.1984


P values (Cpd 3 &
0.0007
 0.000007
 0.000013
 0.0012
 0.9042


Cpd B)







Cpd A
0.0145
0.0411
0.5641
38.9034
13.7251



0.0159
0.0395
0.4794
30.1509
12.1367



0.0040
0.0305
0.2884
72.1000
 9.4557


Ave ± SD
0.0115 ± 0.0065
0.00370 ± 0.0057 
0.4440 ± 0.1412
47.0515 ± 22.1297
11.7725 ± 2.1578


P values* (Cpd 3 &
0.0565
 0.00085
 0.01618
 0.0819
 0.13569


Cpd A)









Using a new H1975 cell line and the WST protocol described above (in the Biological Examples B-2 with the presence of 5% fetal bovine serum), results were obtained as below:










WST Assay (Cell Viability Assay)













IC50 (uM)
IC50 (uM)
IC50 (uM)
Selectivity
Selectivity



H1975_5% FBS
Hcc827
A431
A431/
A431/



T790M/L858R
(delE746-A750)
WT
H1975
Hcc827















Cpd 3
0.019
0.003
0.692
36.42
230.67



0.018
0.008
0.526
29.22
65.75



0.019
0.005
0.694
36.53
138.80


Average ± SD
0.019 ± 0.001
0.005 ± 0.002
0.637 ± 0.096
34.057 ± 4.187
145.072 ± 82.637 


Cpd B
0.053
0.007
0.901
17.00
128.71


(WZ 4002)
0.080
0.021
1.027
12.84
48.90



0.106
0.013
1.025
9.67
78.85


Average ± SD
0.080 ± 0.026
0.014 ± 0.007
0.984 ± 0.072
13.169 ± 3.676
85.488 ± 40.317


P values (Cpd 3 & Cpd B)
 0.0163
 0.1251
 0.0075
0.0029
0.3245


Cpd A
0.106
0.028
2.914
27.491
104.071



0.111
0.059
2.617
23.577
44.356



0.067
0.035
2.809
41.925
80.257


Average ± SD
0.095 ± 0.024
0.041 ± 0.016
2.780 ± 0.151
30.998 ± 9.664
76.228 ± 30.061


P values* (Cpd 3 & Cpd
 0.0055
 0.0205
3.18539E−05
0.6414
0.2466


A)





*p values


1) <0.05 (marked as bolded black) means significant difference;


2) 0.05-0.15 means important difference/improvement although not significant;


3) >0.15 means no significant difference.






Based on the experimental data and p values in the two tables above, Compound 3 demonstrated significantly greater potency than Compounds A and B in both WST and ELISA assays with ten (10) p values <0.05 and two (2) p values between 0.05-0.15. In terms of selectivity, Compound 3 showed a general trend of higher selectivity than Compounds A and B in both WST and ELISA assays with two (2) p values <0.05, two (2) p values between 0.05-0.15 and four (4) p values over 0.15.
Biological Example C
Evaluation of Efficacy of Compound 3 in the Treatment of H1975, HCC827, and A431 Xenograft Mouse Models
This example evaluates the efficacy of Compound 3 in the treatment of NCI-H1975 (L858R/T790M) human non-small cell lung adenocarcinoma, HCC827 (L858R) human lung adenocarcinoma and A431 (WT) human skin epidermoid carcinoma xenograft tumor models in nude mice. Gefitinib, a first generation of reversible EGFR tyrosine kinase inhibitor, was used as a positive control on those three mouse xenograft tumor models.
Experimental Design and Dosing Schedule
Experimental Design and dosing schedule are shown below.







TABLE 5







NCI-H1975 Model



















Dosing









Dose
volume
Dosing

Days for



Group
n
Treatment
(mg/kg)
(μl/g)
route
Solvent
dosing
Schedule


















1
8
Vehicle
—
16.7
PO
PEG system
14
QD


2
8
Compound 3
25
10
PO
PEG system
14
QD


3
8
Compound 3
50
10
PO
PEG system
14
QD


4
8
Compound 3
100
16.7
PO
PEG system
14
QD


5
8
Gefitinib
100
10
PO
1% tween80
14
QD
















TABLE 6







HCC827 Model



















Dosing









Dose
volume
Dosing

Days for



Group
n
Treatment
(mg/kg)
(μl/g)
route
Solvent
dosing
Schedule


















1
8
Vehicle
—
10
PO
—
35
QD


2
8
Compound 3
50
10
PO
PEG system
35
QD


3
8
Compound 3
50
10
PO
0.5% MC
35
QD


4
8
Gefitinib
100
10
PO
1% tween80
7
QD
















TABLE 7







A431 Model



















Dosing









Dose
volume
Dosing

Days for



Group
n
Treatment
(mg/kg)
(μl/g)
route
Solvent
dosing
Schedule


















1
8
Vehicle
—
16.7
PO
PEG system
14
QD


2
8
Compound 3
100
16.7
PO
PEG system
14
QD


3
8
Gefitinib
100
10
PO
1% tween80
14
QD





Note:


n: animal number;


Dosing volume: adjust dosing volume based on body weight;


PEG system: PEG200:alcohol:5% dextrose = 4:1:5;


Treatment schedule was adjusted if body weight loss > 15%.






Animal Housing

Animals

Details on the animals are shown below.
Species: Mouse
Strain: Nu/Nu nude
Age: 7-8 weeks
Sex: Female
Body weight: 20-25 g
Animal supplier: Vital River Laboratories, Beijing, China
Housing Conditions
The mice were kept in Individual Ventilation Cages at constant temperature and humidity with 4 animals in each cage at ACEA Bioscience Hangzhou Inc.

    
    
        Temperature: about 20-26° C.
        Humidity about 40-70%.
    
    


IVC Cages: Made of polycarbonate. The size is 300 mm×180 mm×150 mm. The bedding material is corn cob, which is changed twice per week.
Diet: Animals had free access to irradiation sterilized dry granule food during the entire study period.
Water: Animals had free access to sterile drinking water.
Cage identification: The identification labels for each cage contained the following information: number of animals, sex, strain, date received, treatment, study number, group number and the starting date of the treatment.
Animal identification: Animals were marked by ear cutting.
Experimental Methods and Procedures
Cell Culture
The NCI-H1975, HCC827 and A431 tumor cells were maintained in vitro as a monolayer culture in medium supplemented with 10% fetal bovine serum, 100 U/ml penicillin and 100 μg/ml streptomycin at 37° C. in an atmosphere of 5% CO2 in air as ATCC recommended. The tumor cells were routinely subcultured twice weekly by trypsin-EDTA treatment. The cells growing in an exponential growth phase were harvested and counted for tumor inoculation.
Tumor Inoculation
Each mouse was inoculated subcutaneously at the right flank with H1975 cells (5×106), HCC827 (5×106) and A431 (5×106) respectively in 0.2 ml of medium for tumor development. The treatments were started when the tumor size reached approximately 200-250 mm3. The testing articles were administrated to the mice according to the predetermined regimen as shown in the experimental design table.
Observations
All the procedures related to animal handling, care and the treatment in this study were performed according to the guidelines approved by the Institutional Animal Care and Use Committee (IACUC) following the guidance of the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC). At the time of routine monitoring, the animals were checked for any effects of tumor growth and treatments on normal behavior such as mobility, food and water consumption (by observation), body weight gain/loss (body weights were measured twice weekly), eye/hair matting and any other abnormal effect. Death and observed clinical signs were recorded on the basis of the numbers of animals within each subset. Animals that were observed to be in a continuing deteriorating condition were euthanized prior to death or before reaching a comatose state.
Tumor Measurements and the Endpoints
The major endpoint was to see if the tumor growth can be delayed or mice can be cured. Tumor size was measured twice weekly in two dimensions using a caliper, and the volume was expressed in mm3 using the formula: V=0.5 a×b2 where a and b are the long and short diameters of the tumor, respectively. The tumor size was then used for calculations of both T-C and T/C values. T-C was calculated with T as the median time (in days) required for the treatment group tumors to reach a predetermined size (e.g., 1,000 mm3), and C as the median time (in days) for the control group tumors to reach the same size. The T/C value (in percent) was an indication of antitumor effectiveness; T and C were the mean volume of the treated and control groups, respectively, on a given day. Tumor weight was measured at the study termination. The T/C value (in percent) was calculated where T and C were the mean tumor weights of the treated and control groups, respectively.
Statistical Analysis
Summary statistics, including mean and the standard error of the mean (SEM), are provided for the tumor volume of each group at each time point.
Statistical analysis of difference in tumor volume and tumor weight among the groups was conducted on the data obtained at the best therapeutic time point after the final dose (the 15th day after tumor inoculation).
A one-way ANOVA was performed to compare tumor volume and tumor weight among groups, and when a significant F-statistics (a ratio of treatment variance to the error variance) was obtained, comparisons between groups were carried out with LSD and Games-Howell test. All data were analyzed using SPSS 16.0. p<0.05 was considered to be statistically significant.
Results
5.1. Body Weights
The results of the body weight changes in the tumor-bearing mice for NCI-H1975, HCC827 and A431 models are shown in FIG. 3, FIG. 4, and FIG. 5, respectively.
The mouse body weights in different groups of the tumor-bearing mice at the end of treatment on NCI-H1975, HCC827 and A431 are shown in Table 8, Table 9 and Table 10 respectively.







TABLE 8







The Mouse Body Weights in the Different Groups on


NCI-H1975 Model












Mouse Weight (g) a




Treatment
at day 23(14)
p















Vehicle
22.99 ± 0.26
—



Compound 3 25 mg/kg po qd
22.28 ± 0.55
0.364



Compound 3 50 mg/kg po qd
22.73 ± 0.33
0.737



Compound 3 100 mg/kg po qd
22.53 ± 0.66
0.555



Gefitinib 100 mg/kg po qd
20.43 ± 0.71
0.002

















TABLE 9







The Mouse Body Weights in the Different Groups on HCC827 Model










Mouse Weight (g) a



Treatment
at day 25(14)
p












Vehicle
23.83 ± 0.71
—


Compound 3 (PEG) 50 mg/kg po qd
23.26 ± 0.47
0.523


Compound 3 (MC) 50 mg/kg po qd
23.54 ± 0.67
0.743


Gefitinib 100 mg/kg po qd
23.70 ± 0.43
0.887
















TABLE 10







The Mouse Body Weights in the Different Groups on A431 Model










Mouse Weight (g) a



Treatment
at day 25(14)
p












Vehicle
25.64 ± 0.53
—


Compound 3 100 mg/kg po qd
25.66 ± 0.72
0.979


Gefitinib 100 mg/kg po qd
21.56 ± 0.51
0.000





Note:


a Mean ± SEM






Tumor Volumes
The tumor sizes of the different groups at different time points on NCI-H1975, HCC827 and A431 are shown in Table 11, Table 12, and Table 13, respectively.







TABLE 11







Tumor Sizes in the Different Treatment Groups on NCI-H1975 model









Tumor volume (mm3)a














Compound 3,
Compound 3,
Compound 3,
Gefitinib, PO,



Vehicle, PO, QD
PO, QD
PO, QD
PO, QD
QD


Days
—
25 mpk
50 mpk
100 mpk
100 mpk















9
 215.01 ± 20.88
219.91 ± 22.33
215.95 ± 21.58 
220.64 ± 22.95
215.95 ± 22.36


12
 387.98 ± 45.76
284.09 ± 32.64 
255.85 ± 34.44
181.40 ± 21.15 
379.15 ± 46.00


16
 828.95 ± 58.76 
393.95 ± 42.09
268.23 ± 47.77 
180.18 ± 26.25
737.84 ± 80.06


19
1425.22 ± 101.9 
514.88 ± 55.57
346.01 ± 62.50
207.28 ± 42.54
1195.5 ± 67.91


23
 2169.9 ± 170.8 
670.36 ± 54.19 
373.01 ± 63.35 
232.25 ± 37.11
1702.5 ± 101.8
















TABLE 12







Tumor Sizes in the Different Treatment Groups on HCC827 model









Tumor volume (mm3)a












Vehicle, PO, QD
Compound 3,PO, QD
Compound 3, PO, QD
Gefitinib, PO, QD


Days
Vehicle
50 mpk (PEG)
50 mpk (0.5% MC)
100 mpk














14
 215.94 ± 25.70
211.90 ± 23.00 
211.14 ± 25.11
212.28 ± 26.35


18
 291.15 ± 24.42 
188.72 ± 28.03 
216.63 ± 27.69
 59.55 ± 25.20


21
 353.24 ± 25.64 
136.96 ± 16.40 
245.14 ± 33.44
 4.61 ± 3.16


25
 453.43 ± 24.72
 95.73 ± 15.38
216.42 ± 28.06
 1.25 ± 1.25


28
 519.39 ± 22.26 
111.96 ± 22.05 
231.08 ± 30.81
 1.25 ± 1.25


32
 638.78 ± 32.70
 82.28 ± 24.08
277.59 ± 42.02
 1.25 ± 1.25


35
 762.43 ± 47.22
 67.63 ± 24.22 
293.64 ± 43.98
 1.88 ± 1.32


39
1092.53 ± 99.28 
 69.44 ± 30.35
328.53 ± 43.51
 1.88 ± 1.32


42
1324.76 ± 141.54 
 79.71 ± 28.86
302.31 ± 35.83
 10.95 ± 6.13


46
1736.94 ± 217.03
 84.26 ± 35.62
284.44 ± 27.00
 23.71 ± 11.84


49
1920.11 ± 256.36
 77.59 ± 42.07
299.28 ± 31.79
 41.00 ± 20.52
















TABLE 13







Tumor Sizes in the Different Treatment Groups on A431 model









Tumor volume (mm3)a












Compound 3,
Gefitinib, 



Vehicle, PO,QD
PO, QD
PO, QD


Days
—
100 mpk
100 mpk













11
241.34 ± 28.69 
240.95 ± 26.46 
239.83 ± 23.30


14
472.09 ± 71.50 
399.68 ± 42.62
203.74 ± 22.97


18
860.82 ± 120.62 
867.62 ± 70.54
139.70 ± 26.94


21
1211.0 ± 157.77 
1166.1 ± 94.08 
139.70 ± 22.07


25
1666.6 ± 233.36 
1627.7 ± 146.0 
154.79 ± 32.62





Note:


aMean ± SEM






Tumor Growth Inhibition

The tumor growth inhibition on NCI-H1975, HCC827 and A431 models is summarized in Table 14, Table 15, and Table 16, respectively.







TABLE 14







Effect of Compounds in the Treatment of H1975 Xenografts Tumor Model












Tumor Size 






(mm3)a
T/C
T-C (days)



Treatment
at day 23(14)
(%)
at 300 mm3
p














Vehicle
2170 ± 171 
—
—
—


Compound 3



0.000


25 mg/kg po qd
670 ± 54 
28.5%
2.11



Compound 3



0.000


50 mg/kg po qd
373 ± 63 
16.0%
6.76



Compound 3



0.000


100 mg/kg po qd
232 ± 37 
9.9%
>14



Gefitinib



0.345


100 mg/kg po qd
1702 ± 102 
77.4%
0.08

















TABLE 15







Effect of Compounds in the Treatment of HCC827 Xenografts


Tumor Model













Tumor Size

TRRb





(mm3)a
T/C
at day
T-C (days)



Treatment
at day 49(35)
(%)
49(35)
at 300 mm3
P















Vehicle
1920 ± 256 
—
—
—
—


Compound 3 




0.001


(PEG)







50 mg/kg po qd
78 ± 42
2.8%
71.4%
>35



Compound 3 




0.002


(MC)







50 mg/kg po qd
299 ± 32 
14.3%
−45.0%
17.3



Gefitinib




0.001


100 mg/kg po qd
41 ± 21
2.4%
75.7%
>35

















TABLE 16







Effect of Compounds in the Treatment of A431 Xenografts Tumor Model












Tumor Size






(mm3)a
T/C
T-C (days)



Treatment
at day 25(14)
(%)
at 300 mm3
p














Vehicle
1667 ± 233
—
—
—


Compound 3



0.999


100 mg/kg po qd
1628 ± 146
98.3%
0.35



Gefitinib



0.001


100 mg/kg po qd
154 ± 33
8.7%
>14






Note:


aMean ± SEM


bTumor regression rate (%) = (1-tumor volume of after treatment/tumor volume of pretreatment) *






100%

Tumor Growth Curve

The tumor growth curve in different groups of the tumor-bearing mice on NCI-H1975, HCC827 and A431 models are shown in FIG. 6, FIG. 7, and FIG. 8, respectively.
Tumor Weights
The mouse tumor weights in different groups on NCI-H1975, HCC827 and A431 models are shown in Table 17, Table 18, and Table 19, respectively.







TABLE 17







The Antitumor Activity of Compounds in the Treatment of 


NCI-H1975 Model











Tumor 
IR a




Weight (g)
at day



Treatment
at day 23(14)
23(14)
p













Vehicle
1.99 ± 0.16
—
—


Compound 3


0.001


25 mg/kg po qd
0.70 ± 0.04
65.0%



Compound 3


0.000


50 mg/kg po qd
0.34 ± 0.08
82.8%



Gefitinib


0.717


100 mg/kg po qd
1.69 ± 0.11
15.1%

















TABLE 18







The Antitumor Activity of Compounds in the Treatment of HCC827 Model











Tumor Weight (g)
IR a



Treatment
at day 49(35)
at day 49(35)
p





Vehicle
1.94 ± 0.32
—
—


Compound 3 (PEG)


.004


50 mg/kg po qd
0.06 ± 0.02
96.7%



Compound 3 (MC)


.008


50 mg/kg po qd
0.26 ± 0.04
86.5%



Gefitinib


.004


100 mg/kg po qd
0.03 ± 0.02
98.3%

















TABLE 19







The Antitumor Activity of Compounds in the Treatment of A431 Model











Tumor Weight (g)
IR a



Treatment
at day 23(14)
at day 23(14)
p













Vehicle
1.67 ± 0.29
—
—


Compound 3


0.817


100 mg/kg po qd
1.60 ± 0.22
4.0%



Gefitinib


0.000


100 mg/kg po qd
0.13 ± 0.03
92.5%






a IR (Inhibition Rate) = (TWControl − TWTreatment)/TWControl × 100%






Biological Example D
Synthesis of the Maleate Salt and Hydrochloride Salt of Compound 3 and Pharmacokinetic Study
The synthesis of the maleate and hydrochloride salts from the free base of Compound 3 is shown below:




To the free base of Compound 3 (2 g) in ethanol/water (5:95, 22 mL) at 40° C., maleic acid (1.2 eq.) or HCl (2.2 eq.) was added dropwise. After the solid was dissolved, the solution was cooled to room temperature, and stood for overnight. The resulting crystals (light yellow or off white) were collected, washed with cold water and dried overnight (over 85% yield).
Pharmacokinetic Studies on Rats with Compound 3 in Free Base, Maleate Salt and HCl Salt Forms:
A pharmacokinetic comparison study was performed on female rats (Zhe Jiang AMS) using Compound 3 in free base, maleate salt, and HCl salt forms. The detailed study conditions along with the experimental results are shown Table 20 below:














TABLE 20










AUClast






Dose


(ng/mL*

Cmax(po) or


Compound
Formulation
(mg/kg)
Route
F %
h)
t1⁄2 (h)
C0 (iv) (ng/ml)






















Compound 3
PEG200:D5W
4.7
i.v.
n/a
 2195 ± 140.2
 1.6 ± 0.04
4102.1 ± 675.8


Free base
(50:50, v/v)








Compound 3
0.5% MC
30.56
p.o.
10.7 ± 2.6
1526.8 ± 364.6 
2.4 ± 0.6
242.0 ± 37.6


Free base









Compound 3
0.5% MC
40.88
p.o.
30.6 ± 8.2
5853.8 ± 1565.4
2.4 ± 1.0
1259.3 ± 359.0


HCl salt









Compound 3
0.5% MC
42.00
p.o.
32.7 ± 9.8
6412.2 ± 1917.8
2.3 ± 0.4
1540.0 ± 528.5


Maleate salt









Compound 3
PEG200:D5W
37.6
p.o.
 23.0 ± 10.8
4041.0 ± 1892.3
2.8 ± 0.3
1263.3 ± 270.2


Free base
(50:50, v/v)









The results show that in the same formulation of 0.5% methylcellulose (MC), the salt forms (both maleate salt and HCl salt) had about a 3-fold better bioavailability compared to the free base form.
Biological Example E
Compound 3 was tested against a range of other protein kinases.
Assay Description. In vitro profiling protein kinases was performed using the “HotSpot” assay platform. Briefly, specific kinase/substrate pairs along with required cofactors were prepared in reaction buffer. Compounds were delivered into the reaction, followed 15-20 minutes later by addition of a mixture of ATP (Sigma, St. Louis Mo.) and 33P ATP (Perkin Elmer, Waltham Mass.) to a final concentration of 10 μM. Reactions were carried out at room temperature for 120 min, followed by spotting of the reaction mixtures onto P81 ion exchange filter paper (Whatman Inc., Piscataway, N.J.). Unbound phosphate was removed by extensive washing of filters in 0.75% phosphoric acid. After subtraction of background derived from control reactions containing inactive enzyme, kinase activity data was expressed as the percent of remaining kinase activity in test samples compared to vehicle (dimethyl sulfoxide) reactions. IC50 values and curve fits were obtained using Prism (GraphPad Software).
Reaction Conditions: Buffer Conditions: 20 mM Hepes (pH 7.5), 10 mM MgCl2, 1 mM EGTA, 0.02% Brij35, 0.02 mg/mL BSA, 0.1 mM Na3VO4, 2 mM DTT, and 1% DMSO. ATP concentration: 10 μM. Reaction Time: 2 hours. Compound 3 was tested at 10 concentrations as follows with a comparison to the common kinase inhibitor reference compound staurosporine. Compounds were tested in a 10-point IC50 mode with 3-fold serial dilution starting at 10 uM. Control Compound was tested in a 10-point IC50 with 3-fold serial dilution starting at 20 uM. All kinase reactions were performed at 10 uM ATP. Test concentrations are provided below in molar units (M).














Compound 3
Staurosporine-control









1.00E−05
2.00E−05



3.33E−06
6.67E−06



1.11E−06
2.22E−06



3.70E−07
7.41E−07



1.23E−07
2.47E−07



4.12E−08
8.23E−08



1.37E−08
2.74E−08



4.57E−09
9.14E−09



1.52E−09
3.05E−09



5.08E−10
1.02E−09










The following kinase enzymes were tested:



















HUGO
General
Genbank
Protein






Name
symbol
Substrate
Accession #
Accession #
Clone
Mutation
Expression
Tag







BLK
BLK
pEY
NP_001706
P51451
full-length
—
Insect
N-terminal His


BMX/ETK
BMX
pEY
NP_001712
P51813
full length
—
baculovirus in Sf21
C-terminal His









insect cells



BTK
BTK
pEY
NP_000052
Q06187
full-length
—
Insect
N-terminal His6-










tagged


ITK
ITK
MBP
NP_005537
Q08881
full-length
—
Insect
N-terminal GST


JAK2
JAK2
pEY
NP_004963
O60674
aa 809-1132 + g
—
Insect
N-terminal GST


JAK3
JAK3
JAK3tide
NP_000206
P52333
aa 781-1124
—
Insect
N-terminal GST


TEC
TEC
pEY + Mn
NP_003206
P42680
full length
—
baculovirus insect cell
C-terminal His-tag


TXK
TXK
ABLtide
NP_003319.2
P42681
full length
—
Insect
N-terminal GST-tag


FLT3(D835Y)
FLT3
Abltide
NP_004110
P36888
aa 564-958
D835Y
baculovirus insect cell
C-terminal His6-tag









Results: The IC50 values for each of the kinase targets is summarized as follows:















Compound IC50 (M)











Kinases
Compound 3
Staurosporine







BLK
2.34E−10
1.22E−09



BMX/ETK
3.45E−10
2.19E−09



BTK
3.99E−10
5.78E−09



FLT3
1.09E−08
1.63E−11



(D835Y)





ITK
5.17E−10
8.96E−09



JAK2
5.01E−07
<1.00E−9  



JAK3
9.11E−11
2.99E−11



TEC
6.69E−10
2.68E−08



TXK
6.98E−10
1.28E−08










Below are provided lists of the IC50 value and raw data for each individual targeted enzyme.
The percentage of the activity is a relative value in comparison to buffer solution only. DMSO is listed as a reference. The IC50 value for Compound 3 for BLK was 0.23 nM. The corresponding curves for Compound 3 are shown in FIGS. 15A and 15B, respectively.










% Activity













Stauro


Conc.(M)
Compound 3
Staurosporine
Conc.(M)













1.00E−05
−0.41
0.57
2.00E−05


3.33E−06
2.22
2.47
6.67E−06


1.11E−06
4.39
1.46
2.22E−06


3.70E−07
1.49
−1.03
7.41E−07


1.23E−07
−0.50
−2.23
2.47E−07


4.12E−08
−3.83
−1.99
8.23E−08


1.37E−08
−0.37
1.34
2.74E−08


4.57E−09
1.07
10.32
9.14E−09


1.52E−09
14.53
27.25
3.05E−09


5.08E−10
29.73
53.08
1.02E−09


DMSO
102.02
97.98
DMSO









The IC50 for Compound 3 for BMX/ETK was 0.35 nM. The curve for Compound 3 is shown in FIG. 16.










% Activity















Stauro



Conc.(M) 
Compound 3 
Staurosporine
Conc.(M)
















1.00E−05
1.44
9.22
2.00E−05



3.33E−06
−4.22
−4.43
6.67E−06



1.11E−06
−0.82
−1.61
2.22E−06



3.70E−07
−3.51
−0.71
7.41E−07



1.23E−07
−0.30
1.44
2.47E−07



4.12E−08
1.70
8.90
8.23E−08



1.37E−08
1.03
18.68
2.74E−08



4.57E−09
7.02
24.52
9.14E−09



1.52E−09
9.87
39.02
3.05E−09



5.08E−10
37.60
64.45
1.02E−09



DMSO
98.60
96.41
DMSO










The IC50 for Compound 3 for BTK was 0.40 nM. The curve for Compound 3 is shown in FIG. 17.










% Activity













Stauro


Conc.(M) 
Compound 3
Staurosporine
Conc.(M)













1.00E−05
3.65
1.93
2.00E−05


3.33E−06
0.69
−0.14
6.67E−06


1.11E−06
−0.26
0.21
2.22E−06


3.70E−07
3.46
3.51
7.41E−07


1.23E−07
1.71
6.52
2.47E−07


4.12E−08
1.89
10.70
8.23E−08


1.37E−08
4.18
20.50
2.74E−08


4.57E−09
3.32
41.55
9.14E−09


1.52E−09
11.43
60.75
3.05E−09


5.08E−10
40.24
81.36
1.02E−09


DMSO
96.43
98.79
DMSO









The IC50 for Compound 3 for FLT3 (D835Y) was 10.90 nM. The curve for Compound 3 is shown in FIG. 18.










% Activity













Stauro


Conc.(M)
Compound 3 
Staurosporine
Conc.(M)













1.00E−07
11.32
−1.65
1.00E−07


3.33E−08
27.78
0.98
3.33E−08


1.11E−08
49.45
0.31
1.11E−08


3.70E−09
70.12
2.34
3.70E−09


1.23E−09
92.41
−0.82
1.23E−09


4.12E−10
99.20
3.17
4.12E−10


1.37E−10
104.37
2.10
1.37E−10


4.57E−11
94.42
20.65
4.57E−11


1.52E−11
97.21
53.79
1.52E−11


5.08E−12
102.50
85.41
5.08E−12


DMSO
99.21
100.79
DMSO









The IC50 for Compound 3 for ITK was 0.52 nM. The curve for Compound 3 is shown in FIG. 19.










% Activity













Stauro


Conc.(M)
Compound 3
Staurosporine
Conc.(M)













1.00E−05
0.79
0.35
2.00E−05


3.33E−06
0.01
0.60
6.67E−06


1.11E−06
1.27
−0.12
2.22E−06


3.70E−07
1.16
1.90
7.41E−07


1.23E−07
0.90
4.54
2.47E−07


4.12E−08
1.70
9.04
8.23E−08


1.37E−08
1.34
19.24
2.74E−08


4.57E−09
2.39
49.31
9.14E−09


1.52E−09
4.41
76.22
3.05E−09


5.08E−10
52.22
95.37
1.02E−09


DMSO
101.99
97.19
DMSO









The IC50 for Compound 3 for JAK2 was 501 nM. The curve for Compound 3 is shown in FIG. 20.










% Activity













Stauro


Conc.(M)
Compound 3
Staurosporine
Conc.(M)













1.00E−05
−2.83
−5.43
2.00E−05


3.33E−06
9.17
−8.65
6.67E−06


1.11E−06
23.15
−6.44
2.22E−06


3.70E−07
60.18
−6.42
7.41E−07


1.23E−07
94.11
−6.76
2.47E−07


4.12E−08
100.48
−7.25
8.23E−08


1.37E−08
99.88
−3.41
2.74E−08


4.57E−09
98.95
−0.60
9.14E−09


1.52E−09
103.16 
5.51
3.05E−09


5.08E−10
98.40
18.77
1.02E−09


DMSO
103.16
100.65
DMSO









To assess JAK3 inhibition, Compound 3 was evaluated as in the other assays, but starting at a concentration of 100 nM. The dilution factor was 3-fold as in the other assays, resulting in a test concentration range of 100 nM to 5.08 pM. The IC50 for Compound 3 for JAK3 was 91.1 pM. The curve for Compound 3 is shown in FIG. 21.










% Activity













Stauro


Conc.(M)
COMPOUND 3
Staurosporine
Conc.(M)













1.00E−07
−0.21
−0.79
1.00E−07


3.33E−08
0.22
−0.88
3.33E−08


1.11E−08
−1.35
−0.51
1.11E−08


3.70E−09
−0.10
0.09
3.70E−09


1.23E−09
1.25
−1.86
1.23E−09


4.12E−10
9.43
0.36
4.12E−10


1.37E−10
35.13
4.48
1.37E−10


4.57E−11
72.27
41.45
4.57E−11


1.52E−11
89.22
70.04
1.52E−11


5.08E−12
92.29
88.93
5.08E−12


DMSO
102.06
102.66
DMSO









The IC50 for Compound 3 for TEC was 0.67 nM. The curve for Compound 3 is shown in FIG. 22.










% Activity













Stauro


Conc.(M) 
Compound 3
Staurosporine
Conc.(M)













1.00E−05
2.69
1.43
2.00E−05


3.33E−06
7.10
3.40
6.67E−06


1.11E−06
5.72
3.35
2.22E−06


3.70E−07
11.05
8.71
7.41E−07


1.23E−07
14.88
18.31
2.47E−07


4.12E−08
19.39
31.27
8.23E−08


1.37E−08
20.14
47.73
2.74E−08


4.57E−09
22.53
70.74
9.14E−09


1.52E−09
32.07
79.41
3.05E−09


5.08E−10
72.24
93.91 
1.02E−09


DMSO
99.73
99.19
DMSO









The IC50 for Compound 3 for TXK was 0.70 nM. The curve for Compound 3 is shown in FIG. 23.










% Activity













Stauro


Conc.(M) 
Compound 3
Staurosporine
Conc.(M)













1.00E−05
−0.05
−0.60
2.00E−05


3.33E−06
−1.39
−0.74
6.67E−06


1.11E−06
4.24
2.69
2.22E−06


3.70E−07
−2.01
1.66
7.41E−07


1.23E−07
3.26
9.25
2.47E−07


4.12E−08
2.76
17.37
8.23E−08


1.37E−08
0.31
32.52
2.74E−08


4.57E−09
4.11
58.10
9.14E−09


1.52E−09
23.68
79.12
3.05E−09


5.08E−10
58.85
95.83
1.02E−09


DMSO
96.09
100.00
DMSO









Data for Other Compounds

1. ELISA Assay (EGFR):
Using the protocol described in the biological example B-2, the following compounds were also tested in ELISA assay (EGFR). The results are shown in Table 21 below.







TABLE 21







ELISA Assay (EGFR)











IC50 (uM)





H1975
IC50 (uM)




T790M/L858R
A431 WT
Selectivity


Cpd/EGFR
(no EGF stimulation)
(EGF stimulation)
A431/H1975













Cpd 1
0.0063
0.6470 
102.70


Cpd 2
0.0010
0.3000 
300.00


Cpd 4
0.0670
10.9000
162.69


Cpd 5
0.2430
27.5000
113.17


Cpd 6
0.0398 
9.2700
232.91


Cpd 7
12.4100
>20
N/A


Cpd 34
0.0217
2.0170
92.95









2. Other Kinases—Enzymatic Assays
Using the protocol described in the biological example E, the following compounds were also tested against other kinases (BTK, Jak1, Jak2 and Jak3) (Table 22 below).








TABLE 22








Enzymatic Assays



IC50











Cpd\Kinases
BTK
JAK3
JAK2
JAK1





Cpd 1
5.79E−10
3.66E−11
5.70E−07
3.22E−06


Cpd 2
3.62E−10
3.65E−11
2.06E−06
1.40E−05


Cpd 3
3.99E−10
9.11E−11
5.01E−07
3.27E−06


Control 
4.97E−09
1.92E−11
1.96E−10
3.65E−10


Staurosporine













Other Kinases (BTK and JAK3)—Cell-Based Assays

Protocol for ClariCELLTM JAK3 and BTK Assays is described below:

    
    
        HEK293 human embryonic kidney cells were transiently transfected with either human wt BTK, human wt JAK3, or kinase-dead human JAK3 (for JAK3 negative controls). For BTK negative controls, wt BTK transfection was utilized plus treatment with 1 uM Ibrutinib.
        Cells were dispensed into 96-well plates at approximately 8,000 cells/well for BTK, or 20,000 cells per well for JAK3.
        Eight three-fold serial dilutions (or two-fold for tofacitinib) were prepared for each compound in 100% DMSO.
        Compounds were then diluted in water to 10× final assay concentration and 6% DMSO.
        Compounds were added to the cells in 96-well plates (10-fold dilution in tissue culture medium) for a final concentration of 1× compound and 0.6% DMSO.
        Cells were incubated with compound at 37° C. for 2 hours.
        Cells were lysed, and lysate was transferred to an ELISA plate that had been previously coated with antibody to capture the substrate (either human BTK or human JAK3).
        Plates were washed then incubated with antibody to detect total tyrosine phosphorylation*.
        Plates were washed then incubated with secondary antibody labeled with HRP.
        HRP substrate was added, and absorbance was read at 450 nm
        *Note that because a pan-antiphosphotyrosine antibody was utilized, there is a possibility that tyrosine kinase activities in addition to BTK or JAK3 can be measured.
    
    


The test results for BTK cell-based assays are shown in the following Table 23.










TABLE 23








Cell-based Assays (CAI)




IC50(μM)



Cpd\Kinases
BTK









Cpd 2
0.012




0.059



Cpd 3
0.026




0.036




0.059



Control
0.013



(Ibrutinib)
0.013




0.067




0.012










The test results for JAK3 cell-based assays are shown in the following Table 24.










TABLE 24








Cell-based Assays (CAI)




IC50(μM)



Cpd\Kinases
JAK3



















Cpd 2
0.20




0.36



Cpd 3
0.23




0.28




0.25




0.36



Control
2.3



(Tofacitinib) 
2.3




1.2




3.7

## Claims

1. A compound of Formula (VII):



wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R8 is selected from halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is C1-6 alkyl; and
R13 is hydrogen or C1-6 alkyl;
or a pharmaceutically acceptable salt thereof.

2. The compound of claim 1, wherein R1 and R2 are each hydrogen.

3. The compound of claim 1, wherein R8 is halo.

4. The compound of claim 3, wherein R8 is fluoro.

5. The compound of claim 1, wherein R10 is methyl, ethyl, or isopropyl.

6. The compound of claim 5, wherein R10 is methyl.

7. The compound of claim 1, wherein R13 is hydrogen.

8. A compound of Formula (III):



wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R3 is selected from halo, hydroxyl, C1-6 alkyl, C1-6 alkoxy, cyano, and nitro;
n is a number from zero to 4;
R4 is selected from hydrogen, C1-6 alkyl, C3-7 cycloalkyl, and NR22R23;
wherein the alkyl or cycloalkyl is unsubstituted or substituted with hydroxyl or amino; and
wherein each R22 and R23 is independently selected from hydrogen and C1-6 alkyl, or R22 and R23 taken with the nitrogen to which they are attached are joined to form a 3 to 10 membered ring;

R5 is selected from hydrogen and C1-6 alkyl;
R6 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R7 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl;
R11 is selected from hydrogen and C1-6 alkyl;
R12 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.

9. The compound of claim 8, wherein R11 and R12 are each hydrogen.

10. The compound of claim 8, wherein R1 and R2 are each hydrogen.

11. The compound of claim 8, wherein n is zero.

12. The compound of claim 8, wherein R10 is methyl.

13. The compound of claim 8, wherein R13 is hydrogen.

14. The compound of claim 8, wherein R9 is hydrogen or halo.

15. The compound of claim 14, wherein R9 is fluoro.

16. The compound of claim 8, wherein R6 and R7 are hydrogen.

17. The compound of claim 8, wherein R8 is hydrogen or halo.

18. The compound of claim 8, wherein R6, R7, and R8 are hydrogen and R9 is fluoro.

19. The compound of claim 8, wherein R4 and R5 are each hydrogen.

20. A pharmaceutical composition comprising: (a) at least one compound of claim 8 or a pharmaceutically acceptable salt thereof; and (b) a pharmaceutically acceptable carrier or excipient.

21. The pharmaceutical composition of claim 20, wherein the pharmaceutically acceptable salt is an HCl salt, a maleate salt, an HBr salt, a hydroxybutanedioic acid salt, or a fumaric acid salt.

22. A compound of Formula (VI):



wherein
R1 and R2 are independently selected from hydrogen, halo, C1-6 alkyl, and C1-6 haloalkyl;
R8 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
Q is CR9 or N;
R9 is selected from hydrogen, halo, C1-6 alkyl, C1-6 haloalkyl, C1-6 haloalkoxy, hydroxyl, cyano, and nitro;
R10 is selected from hydrogen and C1-6 alkyl; and
R13 is selected from hydrogen, C1-6 alkyl, and C6-20 aryl, wherein each alkyl or aryl is unsubstituted or substituted with hydroxyl, C1-6 alkoxy, or halo;
or a pharmaceutically acceptable salt thereof.

23. The compound of claim 22, wherein R1 and R2 are each hydrogen.

24. The compound of claim 22, wherein Q is CR9.

25. The compound of claim 24, wherein R9 is hydrogen or halo.

26. The compound of claim 22, wherein R8 is hydrogen or halo.

27. The compound of claim 22, wherein one of R8 and R9 is hydrogen and the other is fluoro.

28. The compound of claim 22, wherein R10 is methyl.

29. The compound of claim 22, wherein R13 is hydrogen.

30. A compound selected from the group consisting of:












and pharmaceutically acceptable salts thereof.