# Patent

## Title
Volatile applications against pathogens

## Abstract

This invention is related to the use of a volatile antimicrobial compound against pathogens affecting humans comprising contacting infected areas with an atmosphere containing an effective amount of a volatile antimicrobial compound in gaseous form. The volatile antimicrobial compounds provided include certain oxaborole compounds, for example benzoxaboroles. Delivery systems are provided to take advantage of the volatile nature of these antimicrobial compounds. The method and use disclosed can be combined with other volatile compounds.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims the benefit of priority under 35 U.S.C. §119(e) of U.S. provisional patent application No. 61/991,821, filed May 12, 2014, the content of which is incorporated in its entirety.
This application is a continuation-in-part of U.S. patent application Ser. No. 14/294,057, filed on Jun. 2, 2014, which is a continuation of U.S. patent application Ser. No. 14/167,093, now U.S. Pat. No. 9,138,001, filed on Jan. 29, 2014. This application is also a continuation-in-part of U.S. patent application Ser. No. 14/182,793, now U.S. Pat. No. 9,138,002, filed on Feb. 18, 2014, which is a divisional of U.S. patent application Ser. No. 13/945,577, now U.S. Pat. No. 8,669,207, filed on Jul. 18, 2013. Application Ser. Nos. 14/294,057, 14/167,093, 14/182,793, and 13/945,577 all claim the benefit of priority to U.S. provisional patent application No. 61/758,313, filed Jan. 30, 2013. The contents of all five applications are hereby incorporated by reference in their entireties.


BACKGROUND OF THE INVENTION
A number of compounds containing an oxaborole ring have been disclosed previously. However, there has been no teaching that these oxaborole compounds are volatile antimicrobial agents. Current treatments of Athlete's foot and Vaginosis are accomplished via topical applications of anti-biotic or anti-fungal drugs. In the case of vaginosis, there are also oral anti-biotics.
Thus, there remains a need to develop new uses of various volatile antimicrobial agents and/or combinations with other volatile compounds.
SUMMARY OF THE INVENTION
This invention is related to the use of a volatile antimicrobial compound against pathogens affecting humans comprising contacting infected areas with an atmosphere containing an effective amount of a volatile antimicrobial compound in gaseous form. The volatile antimicrobial compounds provided include certain oxaborole compounds, for example benzoxaboroles. Delivery systems are provided to take advantage of the volatile nature of these antimicrobial compounds. The method and use disclosed can be combined with other volatile compounds.
In one aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of formula (I), (II), or (III):




wherein q1 and q2 are independently 1, 2, or 3;
q3=0, 1, 2, 3, or 4;
M is hydrogen, halogen, —OCH3, or —CH2—O—CH2—O—CH3;
M1 is halogen, —CH2OH, or —OCH3;
X is O, S, or NR1c, wherein R1c is hydrogen, substituted alkyl, or unsubstituted alkyl;
R1, R1a, R1b, R2, and R5 are independently hydrogen, OH, NH2, SH, CN, NO2, SO2, OSO2OH, OSO2NH2, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
R* is substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, substituted or unsubstituted heteroaryl, substituted or unsubstituted heteroarylalkyl, or substituted or unsubstituted vinyl;
with a proviso that when M is F, R* is not a member selected from:




and with a proviso that when M is Cl, R* is not a member selected from:




and with a proviso that when M is hydrogen, R* is not a member selected from:




wherein s=1 or 2; and R3 and R4 are independently methyl or ethyl;
and with a provision that when M is OCH3, R* is not a member selected from:




and with a provision that when M is F, R* is not a member selected from:




and pharmaceutically acceptable salts thereof.
In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the method provided further comprises impregnating, microencapsulating, or coating a material for releasing the volatile antimicrobial compound in a gaseous form. In a further embodiment, the matrix comprises a slow release mechanism. In another embodiment, the matrix comprises an absorbent material. In another embodiment, the matrix comprises a fabric. In a further embodiment, the absorbent material or fabric comprises materials made of cellulose, glass, polymer, nylon, or plastic fibers. In another embodiment, the volatile antimicrobial compound has a structure of




In another aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of formula (IV):




wherein A and D together with the carbon atoms to which they are attached form a 5-, 6-, or 7-membered fused ring which may be substituted by C1-C6-alkyl, C1-C6-alkoxy, hydroxy, halogen, nitro, nitrile, amino, amino substituted by one or more C1-C6-alkyl groups, carboxy, acyl, aryloxy, carbonamido, carbonamido substituted by C1-C6-alkyl, sulfonamido or trifluoromethyl or the fused ring may link two oxaborole rings;
X is a group —CR7R8 wherein and R are each independently hydrogen, C1-C6-alkyl, nitrile, nitro, aryl, arylalkyl or R7 and R8 together with the carbon atom to which they are attached form an alicyclic ring; and
R6 is hydrogen, C1-C18-alkyl, (C1-C18-alkyl substituted by C1-C6-alkoxy, C1-C6-alkylthio, hydroxy, amino, amino substituted by C1-C18-alkyl, carboxy, aryl, aryloxy, carbonamido, carbonamido substituted by C1-C6-alkyl, aryl or arylalkyl, arylalkyl, aryl, heteroaryl, cycloalkyl, C1-C18-alkyleneamino, C1-C18-alkyleneamino substituted by phenyl, C1-C6-alkoxy or C1-C6-alkylthio, carbonyl alkyleneamino or a radical of formula (V):




wherein A, D and X are as defined herein except for boronophthalide;
and pharmaceutically acceptable salts thereof.
In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the method provided further comprises impregnating, microencapsulating, or coating a material for releasing the volatile antimicrobial compound in a gaseous form. In a further embodiment, the matrix comprises a slow release mechanism. In another embodiment, the matrix comprises an absorbent material. In another embodiment, the matrix comprises a fabric. In a further embodiment, the absorbent material or fabric comprises materials made of cellulose, glass, polymer, nylon, or plastic fibers. In another embodiment, the volatile antimicrobial compound has a structure of




In another aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of formula (VI):




wherein each R is independently hydrogen, alkyl, alkene, alkyne, haloalkyl, haloalkene, haloalkyne, alkoxy, alkeneoxy, haloalkoxy, aryl, heteroaryl, arylalkyl, arylalkene, arylalkyne, heteroarylalkyl, heteroarylalkene, heteroarylalkyne, halogen, hydroxyl, nitrile, amine, ester, carboxylic acid, ketone, alcohol, sulfide, sulfoxide, sulfone, sulfoximine, sulfilimine, sulfonamide, sulfate, sulfonate, nitroalkyl, amide, oxime, imine, hydroxylamine, hydrazine, hydrazone, carbamate, thiocarbamate, urea, thiourea, carbonate, aryloxy, or heteroaryloxy;
n=1, 2, 3, or 4;
B is boron;
X=(CR2)m where m=1, 2, 3, or 4;
Y is alkyl, alkene, alkyne, haloalkyl, haloalkene, haloalkyne, alkoxy, alkeneoxy, haloalkoxy, aryl, heteroaryl, arylalkyl, arylalkene, arylalkyne, heteroarylalkyl, heteroarylalkene, heteroarylalkyne, hydroxyl, nitrile, amine, ester, carboxylic acid, ketone, alcohol, sulfide, sulfoxide, sulfone, sulfoximine, sulfilimine, sulfonamide, sulfate, sulfonate, nitroalkyl, amide, oxime, imine, hydroxylamine, hydrazine, hydrazone, carbamate, thiocarbamate, urea, thiourea, carbonate, aryloxy, or heteroaryloxy;
with a proviso that R is not aryloxy or heteroaryloxy when Y is hydroxyl;
and pharmaceutically acceptable salts thereof.
In one embodiment, the volatile antimicrobial compound has a structure of formula (VII):




wherein W=(CH2)q where q is 1, 2, or 3.
In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the method provided further comprises impregnating, microencapsulating, or coating a material for releasing the volatile antimicrobial compound in a gaseous form. In a further embodiment, the matrix comprises a slow release mechanism. In another embodiment, the matrix comprises an absorbent material. In another embodiment, the matrix comprises a fabric. In a further embodiment, the absorbent material or fabric comprises materials made of cellulose, glass, polymer, nylon, or plastic fibers. In another embodiment, the volatile antimicrobial compound has a structure of




In another aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of formula (VIII):




wherein Ra is CN, C(O)NR9R10, or C(O)OR11 wherein R11 is hydrogen, substituted alkyl, or unsubstituted alkyl,
X is N, CH and CRb;
Rb is halogen, substituted or unsubstituted alkyl, C(O)R12, C(O)OR12, OR12, NR12R13, wherein R9, R10, R12, and R13 are independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
with a proviso that R9 and R10, together with the atoms to which they are attached, are optionally combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring;
and with a proviso that R12 and R13, together with the atoms to which they are attached, are optionally combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring;
and pharmaceutically acceptable salts thereof.
In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the method provided further comprises impregnating, microencapsulating, or coating a material for releasing the volatile antimicrobial compound in a gaseous form. In a further embodiment, the matrix comprises a slow release mechanism. In another embodiment, the matrix comprises an absorbent material. In another embodiment, the matrix comprises a fabric. In a further embodiment, the absorbent material or fabric comprises materials made of cellulose, glass, polymer, nylon, or plastic fibers. In another embodiment, the volatile antimicrobial compound has a structure of




In another aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of formula (A):

RA-LA-G-LB-RB  (A),

wherein

each of RA and RB is independently derived from the group consisting of 5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole; 5-chloro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole; 1,3-dihydro-1-hydroxy-2,1-benzoxaborole; and combinations thereof;

the -LA-G-LB- portion of formula (A) is derived from a diol or diamine compound; the diol compound is selected from the group consisting of 1,2-ethylene glycol; 1,2-propylene glycol; 1,3-propylene glycol; 1,1,2,2-tetramethyl-1,2-ethylene glycol; 2,2-dimethyl-1,3-propylene glycol; 1,6-hexanediol; 1,10-decanediol; and combinations thereof; and the diamine compound is 1,2-ethylene diamine; 1,3-propylene diamine; or combinations thereof; G is a substituted or unsubstituted C1-8-alkylene;

and pharmaceutically acceptable salts thereof.

In one embodiment, the compound is volatile. In another embodiment, the compound is a fungicide. In another embodiment, G is selected from —CH2—, —CH2—CH2—, —CH2—CH2—CH2—, —CH(CH3)—CH2—, —C(CH3)2—C(CH3)2—, and —CH2—C(CH3)2—CH2—. In another embodiment, G is selected from —CH2—, —CH2—CH2—, and —CH2—CH2—CH2—.
In another embodiment, each of RA and RB is independently




In another embodiment, the compound has the structure of




In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the method provided further comprises impregnating, microencapsulating, or coating a material for releasing the volatile antimicrobial compound in a gaseous form. In a further embodiment, the matrix comprises a slow release mechanism. In another embodiment, the matrix comprises an absorbent material. In another embodiment, the matrix comprises a fabric. In a further embodiment, the absorbent material or fabric comprises materials made of cellulose, glass, polymer, nylon, or plastic fibers.
In one aspect, provided is a method of using a volatile antimicrobial compound against pathogens including human pathogens. The method comprises:

    (a) mixing a volatile antimicrobial compound with an organic solvent;
    (b) heating the mixture from step (a) to evaporate the organic solvent and render the volatile antimicrobial compound into its gaseous form; and
    (c) contacting areas infected by the pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form at a temperature between 1° C. and 50° C.;
    
        wherein the volatile antimicrobial compound having a structure of formula (I), (II), (III), (IV), (VI), (VII), (VIII), (IX), (X), (XI), (XII), (XIII), (A), (A1), or (A2) provided herein.
    
    


In one embodiment of the method provided, the areas affected by the pathogens comprise vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the areas affected by the pathogens are selected from the group consisting of vaginal yeast infections, athlete's foot, tinea, or combinations thereof. In another embodiment, the pathogens comprise Candida spp. including C. albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, and C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof. In another embodiment, the pathogens are selected from the group consisting of Candida albicans, C. tropicalis, C. glabrata, C. krusei, C. parapsilosis, C. dubliniensis, C. lusitaniae, Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.
In another embodiment, the heating step is performed at a temperature between 30° C. and 300° C.; between 35° C. and 200° C.; between 35° C. and 150° C.; between 30° C. and 50° C.; or between 35° C. and 45° C.
In another embodiment, the contacting step is performed at a temperature between 10° C. and 50° C.; between 1° C. and 10° C.; between 20° C. and 50° C.; between 2° C. and 30° C.; or between 35° C. and 45° C. In another embodiment, the organic solvent comprises acetone or ethanol. In another embodiment, the volatile antimicrobial compound remains in its gaseous form for two days, seven days, ten days, fourteen days, thirty days, forty days, or sixty days.


DETAILED DESCRIPTION OF THE INVENTION
Provided are methods and new uses of volatile compounds based on a discovery that benzoxaborole compounds have volatility at room temperature, a cold storage temperature (for example 1° C. to 10° C.), or a human body temperature. The invention is related to the unique application of volatile fungicidal and anti-microbial compounds to control human diseases. Delivery of the active ingredient may depend on impregnating a matrix which will release the active ingredient in a volatile form slowly over time in the vicinity of the infected area. Examples may include the release of the benzoxaborole active ingredient from bed liners of shoes and shoe inserts, cotton, nylon, or material blend fabrics utilized in socks, from an insert that fits between the toes and sock, a bandage-like system with wraps and adhesives to secure the matrix for athlete's foot. For vaginal yeast infections the benzoxaborole active ingredient may be imbedded into panty liner pads or within the cotton, nylon, or material blend fabric utilized in underwear for vaginal yeast infections. Matrixes in both cases may be made of all sorts of materials from aramid fiber, cellulosic fiber, cotton fiber, fiberglass fiber, silica fiber, coated or impregnated polymers, to PTFE-, vinyl-, acrylic-, silicone-coated fibers, to plastic or nylon materials and fibers.
Unless otherwise stated, the following terms used in this application, including the specification and claims, have the definitions given below. It must be noted that, as used in the specification and the appended claims, the singular forms “a,” “an” and “the” include plural referents unless the context clearly dictates otherwise. Definition of standard chemistry terms may be found in reference works, including Carey and Sundberg, Advanced Organic Chemistry 4th Ed., Vols. A (2000) and B (2001), Plenum Press, New York, N.Y.
As used herein, the phrase “moiety” refers to a specific segment or functional group of a molecule. Chemical moieties are often recognized chemical entities embedded in or appended to a molecule.
As used herein, the phrases “heteroatom” and “hetero-” refer to atoms other than carbon (C) and hydrogen (H). Examples of heteroatoms include oxygen (O), nitrogen (N) sulfur (S), silicon (Si), germanium (Ge), aluminum (Al) and boron (B).
As used herein, the phrases “halo” and “halogen” are interchangeable and refer to fluoro (—F), chloro (—Cl), bromo (—Br), and iodo (—I).
As used herein, the phrase “alkyl” refers to an unsubstituted or substituted, hydrocarbon group and can include straight, branched, cyclic, saturated and/or unsaturated features. Although the alkyl moiety may be an “unsaturated alkyl” moiety, which means that it contains at least one alkene or alkyne moiety, typically, the alkyl moiety is a “saturated alkyl” group, which means that it does not contain any alkene or alkyne moieties. Likewise, although the alkyl moiety may be cyclic, the alkyl moiety typically is acyclic group. Thus, in some embodiments, “alkyl” refers to an optionally substituted straight-chain, or optionally substituted branched-chain saturated hydrocarbon monoradical having from about one to about thirty carbon atoms in some embodiments, from about one to about fifteen carbon atoms in some embodiments, and from about one to about six carbon atoms in further embodiments. Examples of saturated alkyl radicals include, but are not limited to, methyl, ethyl, n-propyl, isopropyl, 2-methyl-1-propyl, 2-methyl-2-propyl, 2-methyl-1-butyl, 3-methyl-1-butyl, 2-methyl-3-butyl, 2,2-dimethyl-1-propyl, 2-methyl-1-pentyl, 3-methyl-1-pentyl, 4-methyl-1-pentyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 2,2-dimethyl-1-butyl, 3,3-dimethyl-1-butyl, 2-ethyl-1-butyl, butyl, isobutyl, sec-butyl, tert-butyl, n-pentyl, isopentyl, neopentyl, and n-hexyl, and longer alkyl groups, such as heptyl, and octyl. It should be noted that whenever it appears herein, a numerical range such as “1 to 6” refers to each integer in the given range; e.g., “1 to 6 carbon atoms” or “C1-6” or “C1-C6” means that the alkyl group may consist of 1 carbon atom, 2 carbon atoms, 3 carbon atoms, 4 carbon atoms, 5 carbon atoms, and/or 6 carbon atoms, although the present definition also covers the occurrence of the term “alkyl” where no numerical range is designated.
As used herein, the phrase “substituted alkyl” refers to an alkyl group, as defined herein, in which one or more (up to about five, preferably up to about three) hydrogen atoms is replaced by a substituent independently selected from the substituent group defined herein.
As used herein, the phrases “substituents” and “substituted” refer to groups which may be used to replace another group on a molecule. Such groups are known to those of skill in the chemical arts and may include, without limitation, one or more of the following independently selected groups, or designated subsets thereof: halogen, —CN, —OH, —NO2, —N3, ═O, ═S, ═NH, —SO2, —NH2, —COOH, nitroalkyl, amino, including mono- and di-substituted amino groups, cyanato, isocyanato, thiocyanato, isothiocyanato, guanidinyl, O-carbamyl, N-carbamyl, thiocarbamyl, uryl, isouryl, thiouryl, isothiouryl, mercapto, sulfanyl, sulfinyl, sulfonyl, sulfonamidyl, phosphonyl, phosphatidyl, phosphoramidyl, dialkylamino, diarylamino, diarylalkylamino; and the protected compounds thereof. The protecting groups that may form the protected compounds of the above substituents are known to those of skill in the art and may be found in references such as Greene and Wuts, Protective Groups in Organic Synthesis, 3rd ed.; John Wiley & Sons, New York, N.Y. (1999) and Kocienski, Protective Groups; Thieme Verlag, New York, N.Y. (1994) which are incorporated herein by reference in their entirety.
As used herein, the phrase “alkoxy” refers to the group —O-alkyl, where alkyl is as defined herein. In one embodiment, alkoxy groups include, e.g., methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, and the like. The alkoxy can be unsubstituted or substituted.
As used herein, the phrases “cyclic” and “membered ring” refer to any cyclic structure, including alicyclic, heterocyclic, aromatic, heteroaromatic and polycyclic fused or non-fused ring systems as described herein. The term “membered” is meant to denote the number of skeletal atoms that constitute the ring. Thus, for example, pyridine, pyran, and pyrimidine are six-membered rings and pyrrole, tetrahydrofuran, and thiophene are five-membered rings.
As used herein, the phrase “aromatic” refers to a cyclic or polycyclic moiety having a conjugated unsaturated (4n+2)π electron system (where n is a positive integer), sometimes referred to as a delocalized π electron system.
As used herein, the phrase “aryl” refers to an optionally substituted, aromatic, cyclic, hydrocarbon monoradical of from six to about twenty ring atoms, preferably from six to about ten carbon atoms and includes fused (or condensed) and non-fused aromatic rings. A fused aromatic ring radical contains from two to four fused rings where the ring of attachment is an aromatic ring, and the other individual rings within the fused ring may be cycloalkyl, cycloalkenyl, cycloalkynyl, heterocycloalkyl, heterocycloalkenyl, heterocycloalkynyl, aromatic, heteroaromatic or any combination thereof. A non-limiting example of a single ring aryl group includes phenyl; a fused ring aryl group includes naphthyl, anthryl, azulenyl; and a non-fused bi-aryl group includes biphenyl.
As used herein, the phrase “substituted aryl” refers to an aryl group, as defined herein, in which one or more (up to about five, preferably up to about three) hydrogen atoms is replaced by a substituent independently selected from the group defined herein, (except as otherwise constrained by the definition for the aryl substituent).
As used herein, the phrase “heteroaryl” refers to an optionally substituted, aromatic, cyclic monoradical containing from about five to about twenty skeletal ring atoms, preferably from five to about ten ring atoms and includes fused (or condensed) and non-fused aromatic rings, and which have one or more (one to ten, preferably about one to about four) ring atoms selected from an atom other than carbon (i.e., a heteroatom) such as, for example, oxygen, nitrogen, sulfur, selenium, phosphorus or combinations thereof. The term heteroaryl includes optionally substituted fused and non-fused heteroaryl radicals having at least one heteroatom. A fused heteroaryl radical may contain from two to four fused rings where the ring of attachment is a heteroaromatic ring and the other individual rings within the fused ring system may be alicyclic, heterocyclic, aromatic, heteroaromatic or any combination thereof. The term heteroaryl also includes fused and non-fused heteroaryls having from five to about twelve skeletal ring atoms, as well as those having from five to about ten skeletal ring atoms. Examples of heteroaryl groups include, but are not limited to, acridinyl, benzo[1,3]dioxole, benzimidazolyl, benzindazolyl, benzoisooxazolyl, benzokisazolyl, benzofuranyl, benzofurazanyl, benzopyranyl, benzothiadiazolyl, benzothiazolyl, benzo[b]thienyl, benzothiophenyl, benzothiopyranyl, benzotriazolyl, benzoxazolyl, carbazolyl, carbolinyl, chromenyl, cinnolinyl, furanyl, furazanyl, furopyridinyl, furyl, imidazolyl, indazolyl, indolyl, indolidinyl, indolizinyl, isobenzofuranyl, isoindolyl, isoxazolyl, isoquinolinyl, isothiazolyl, naphthylidinyl, naphthyridinyl, oxadiazolyl, oxazolyl, phenoxazinyl, phenothiazinyl, phenazinyl, phenoxathiynyl, thianthrenyl, phenathridinyl, phenathrolinyl, phthalazinyl, pteridinyl, purinyl, puteridinyl, pyrazyl, pyrazolyl, pyridyl, pyridinyl, pyridazinyl, pyrazinyl, pyrimidinyl, pyrimidyl, pyrrolyl, quinazolinyl, quinolinyl, quinoxalinyl, tetrazolyl, thiadiazolyl, thiazolyl, thienyl, triazinyl, (1,2,3)- and (1,2,4)-triazolyl and the like, and their oxides where appropriate, such as for example pyridyl-N-oxide.
As used herein, the phrase “substituted heteroaryl” refers to a heteroaryl group, as defined herein, in which one or more (up to about five, preferably up to about three) hydrogen atoms is replaced by a substituent independently selected from the group defined herein.
As used herein, the phrase “leaving group” refers to a group with the meaning conventionally associated with it in synthetic organic chemistry, i.e., an atom or group displaceable under substitution reaction conditions. Examples of leaving groups include, but are not limited to, halogen, alkane- or arylenesulfonyloxy, such as methanesulfonyloxy, ethanesulfonyloxy, thiomethyl, benzenesulfonyloxy, tosyloxy, and thienyloxy, dihalophosphinoyloxy, optionally substituted benzyloxy, isopropyloxy, acyloxy, and the like. In some embodiments, a leaving group can be HC(O)—COOH or RC(O)—COOH, wherein R is a C1-C6 alkyl or substituted C1-C6 alkyl.
The compounds of the invention as described herein may be synthesized using standard synthetic techniques known to those of skill in the art or using methods known in the art in combination with methods described herein. The starting materials used for the synthesis of the compounds of the invention as described herein, can be obtained from commercial sources, such as Aldrich Chemical Co. (Milwaukee, Wis.), Sigma Chemical Co. (St. Louis, Mo.), or the starting materials can be synthesized. The compounds described herein, and other related compounds having different substituents can be synthesized using techniques and materials known to those of skill in the art, such as described, for example, in March, Advanced Organic Chemistry 4th Ed. (1992) John Wiley & Sons, New York, N.Y.; Carey and Sundberg, Advanced Organic Chemistry 4th Ed., Vols. A (2000) and B (2001) Plenum Press, New York, N.Y. and Greene and Wuts, Protective Groups in Organic Synthesis, 3rd Ed. (1999) John Wiley & Sons, New York, N.Y., (all of which are incorporated by reference in their entirety). General methods for the preparation of compounds as disclosed herein may be derived from known reactions in the field, and the reactions may be modified by the use of appropriate reagents and conditions, as would be recognized by the skilled person, for the introduction of the various moieties found in the formulae as provided herein. For example, the compounds described herein can be modified using various electrophiles or nucleophiles to form new functional groups or substituents.
In some embodiments, the volatile antimicrobial compound of the invention has a structure of formula (I), (II), or (III):




wherein q1 and q2 are independently 1, 2, or 3;
q3=0, 1, 2, 3, or 4;
M is hydrogen, halogen, —OCH3, or —CH2—O—CH2—O—CH3;
M1 is halogen, —CH2OH, or —OCH3;

    
    
        X is O, S, or NR1c, wherein R1c is hydrogen, substituted alkyl, or unsubstituted alkyl;
    
    


R1, R1a, R1b, R2, and R5 are independently hydrogen, OH, NH2, SH, CN, NO2, SO2, OSO2OH, OSO2NH2, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
R* is substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, substituted or unsubstituted heteroaryl, substituted or unsubstituted heteroarylalkyl, or substituted or unsubstituted vinyl;
with a proviso that when M is F, R* is not a member selected from:




and with a proviso that when M is Cl, R* is not a member selected from:




and with a proviso that when M is hydrogen, R* is not a member selected from:




wherein s=1 or 2; and R3 and R4 are independently methyl or ethyl;
and with a provision that when M is OCH3, R* is not a member selected from:




and with a provision that when M1 is F, R* is not a member selected from:




and pharmaceutically acceptable salts thereof.
In one embodiment, the R* has a structure selected from:




wherein X is a member selected from CH═CH, N═CH, NR14, O and S;
wherein R14 is a member selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted aryl and substituted or unsubstituted arylalkyl;
Y is a member selected from CH and N;
R17 and R18 are members independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, (CH2)VOH, (CH2)WNR15R16, CO2H, CO2-alkyl, CONH2, S-alkyl, S-aryl, SO-alkyl, SO-aryl, SO2-alkyl, SO2-aryl, SO2H, SCF2, CN, halogen, CF3 and NO2;
wherein R15 and R16 are members independently selected from hydrogen, substituted or unsubstituted alkyl and substituted or unsubstituted alkanoyl;
v=1, 2, or 3; and
w=0, 1, 2, or 3.
In another embodiment, the R* has the following structure:




wherein R17, R18, R19, R20, and R21 are independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, substituted or unsubstituted alkyloxy, substituted or unsubstituted aryloxy, substituted or unsubstituted oxazolidin-2-yl, (CH2)tOH, CO2H, CO2-alkyl, CONH2, CONH-alkyl, CON(alkyl)2, OH, SH, S-alkyl, S-aryl, SO-alkyl, SO-aryl, SO2-alkyl, SO2-aryl, SO2H, SCF3, CN, halogen, CF3, NO2, (CH2)uNR22R23, SO2NH2, OCH2CH2NH2, OCH2CH2NH-alkyl and OCH2CH2N(alkyl)2;
wherein t=1, 2 or 3;
u=0, 1, or 2;
R22 and R23 are independently selected from H, substituted or unsubstituted alkyl, and substituted or unsubstituted alkanoyl.
In another embodiment, the R* has the following structure:




wherein R17, R18, R19, R20, and R21 are independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, substituted or unsubstituted alkyloxy, substituted or unsubstituted aryloxy, substituted or unsubstituted oxazolidin-2-yl, (CH2)tOH, CO2H, CO2-alkyl, CONH2, CONH-alkyl, CON(alkyl)2, OH, SH, S-alkyl, S-aryl, SO-alkyl, SO-aryl, SO2-alkyl, SO2-aryl, SO2H, SCF3, CN, halogen, CF3, NO2, (CH2)uNR22R23, SO2NH2, OCH2CH2NH2, OCH2CH2NH-alkyl and OCH2CH2N(alkyl)2;
wherein t=1, 2 or 3;
u=0, 1, or 2;
R22 and R23 are independently selected from H, substituted or unsubstituted alkyl, and substituted or unsubstituted alkanoyl;
R24 and R25 are independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted aryl, substituted or unsubstituted arylalkyl, substituted or unsubstituted alkyloxy, substituted or unsubstituted aryloxy, substituted or unsubstituted oxazolidin-2-yl, (CH2), OH, CO2H, CO2-alkyl, CONH2, CONH-alkyl, CON(alkyl)2, OH, SH, S-alkyl, S-aryl, SO-alkyl, SO-aryl, SO2-alkyl, SO2-aryl, SO3H, SCF3, CN, halogen, CF3, NO2, (CH2)uNR22R23, SO2NH2, OCH2CH2NH2, OCH2CH2NH-alkyl and OCH2CH2N(alkyl)2;
Z=1, 2, 3, 4, 5, or 6.
Additional antimicrobial compounds are also disclosed previously in U.S. Pat. No. 8,106,031, and International Patent Application WO 2007/131072A2, the contents of which are hereby incorporated by reference in their entireties.
In some embodiments, the volatile antimicrobial compound of the invention has the structure of formula (IV):




wherein A and D together with the carbon atoms to which they are attached form a 5-, 6-, or 7-membered fused ring which may be substituted by C1-C6-alkyl, C1-C6-alkoxy, hydroxy, halogen, nitro, nitrile, amino, amino substituted by one or more C1-C6-alkyl groups, carboxy, acyl, aryloxy, carbonamido, carbonamido substituted by C1-C6 sulfonamido or trifluoromethyl or the fused ring may link two oxaborole rings;
X is a group —CR7R8 wherein R7 and R8 are each independently hydrogen, C1-C6 alkyl, nitrile, nitro, aryl, arylalkyl or R7 and R8 together with the carbon atom to which they are attached form an alicyclic ring; and
R6 is hydrogen, C1-C18-alkyl, C1-C18-alkyl substituted by C1-C6-alkoxy, C1-C6-alkylthio, hydroxy, amino, amino substituted by C1-C18-alkyl, carboxy, aryl, aryloxy, carbonamido, carbonamido substituted by C1-C6-alkyl, aryl or arylalkyl, arylalkyl, aryl, heteroaryl, cycloalkyl, C1-C18-alkyleneamino, C1-C18-alkyleneamino substituted by phenyl, C1-C6-alkoxy or C1-C6 alkylthio, carbonyl alkyleneamino or a radical of formula (V):




wherein A, D and X are as defined herein before except for boronophthalide;
and pharmaceutically acceptable salts thereof.
In one embodiment, the volatile antimicrobial compound of the invention has the structure of formula (IX):




wherein A, D, and X are defined as above;
Y is a divalent alkylene linking group containing up to 18 carbon atoms or a divalent alkylene linking group containing up to 18 carbon atoms which is substituted by phenyl, C1-C6 alkoxy, C1-C6-alkylthio; carbonyl alkylene amino; and
R3 and R4 are each, independently, hydrogen, C1-C18-alkyl or phenyl or R3 together with Y or part of Y forms a 5-, 6- or 7-membered ring containing the nitrogen atom.
In another embodiment, the volatile antimicrobial compound of the invention has the structure of formula (X):




wherein A, D, and X are defined as above;
n is 1, 2, or 3;
R3 is hydrogen, C1-C18-alkyl or phenyl; and
R5 and R6 are each, independently, hydrogen, alkyl containing up to a total of 16 carbon atoms or phenyl.
Additional antimicrobial compounds are also disclosed previously in U.S. Pat. No. 5,880,188, the content of which is hereby incorporated by reference in its entirety.
In another aspect, the volatile antimicrobial compound of the invention has the structure of formula (VI):




wherein each R is independently hydrogen, alkyl, alkene, alkyne, haloalkyl, haloalkene, haloalkyne, alkoxy, alkeneoxy, haloalkoxy, aryl, heteroaryl, arylalkyl, arylalkene, arylalkyne, heteroarylalkyl, heteroarylalkene, heteroarylalkyne, halogen, hydroxyl, nitrile, amine, ester, carboxylic acid, ketone, alcohol, sulfide, sulfoxide, sulfone, sulfoximine, sulfilimine, sulfonamide, sulfate, sulfonate, nitroalkyl, amide, oxime, imine, hydroxylamine, hydrazine, hydrazone, carbamate, thiocarbamate, urea, thiourea, carbonate, aryloxy, or heteroaryloxy;
n=1, 2, 3, or 4;
B is boron;
X=(CR2)m where m=1, 2, 3, or 4;
Y is alkyl, alkene, alkyne, haloalkyl, haloalkene, haloalkyne, alkoxy, alkeneoxy, haloalkoxy, aryl, heteroaryl, arylalkyl, arylalkene, arylalkyne, heteroarylalkyl, heteroarylalkene, heteroarylalkyne, hydroxyl, nitrile, amine, ester, carboxylic acid, ketone, alcohol, sulfide, sulfoxide, sulfone, sulfoximine, sulfilimine, sulfonamide, sulfate, sulfonate, nitroalkyl, amide, oxime, imine, hydroxylamine, hydrazine, hydrazone, carbamate, thiocarbamate, urea, thiourea, carbonate, aryloxy, or heteroaryloxy;
with a proviso that R is not aryloxy or heteroaryloxy when Y is hydroxyl;
and pharmaceutically acceptable salts thereof.
In one embodiment, the volatile antimicrobial compound has a structure of formula (VII):




wherein W=(CH2)q where q is 1, 2, or 3.
In another embodiment, the volatile antimicrobial compound has a structure of




In another embodiment, the volatile antimicrobial compound of the invention has the structure of formula (VIII):




wherein Ra is CN, C(O)NR9R10, or C(O)OR11 wherein R11 is hydrogen, substituted alkyl, or unsubstituted alkyl,
X is N, CH and CRb;
Rb is halogen, substituted or unsubstituted alkyl, C(O)R12, C(O)OR12, OR12, NR12R13, wherein R9, R10, R12, and R13 are independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
with a proviso that R9 and R10, together with the atoms to which they are attached, are optionally combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring;
and with a proviso that R12 and R13, together with the atoms to which they are attached, are optionally combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring;
and pharmaceutically acceptable salts thereof.
In one embodiment, the volatile antimicrobial compound of the invention has the structure of formula (XI):




In another embodiment, the volatile antimicrobial compound of the invention is selected from:




In another embodiment, the volatile antimicrobial compound of the invention is selected from:




In another embodiment, the volatile antimicrobial compound of the invention is selected from:




In one embodiment, the volatile antimicrobial compound of the invention has the structure of formula (XII):




In another embodiment, the volatile antimicrobial compound of the invention is selected from:




wherein R3 is hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In another embodiment, the volatile antimicrobial compound of the invention is selected from:




wherein R3 is hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In another embodiment, the volatile antimicrobial compound of the invention is selected from:




wherein R3 is hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In one embodiment, the volatile antimicrobial compound of the invention has the structure of formula (XIII):




wherein each of R1 and R2 is independently hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In another embodiment, the volatile antimicrobial compound of the invention is selected from:




In another embodiment, the volatile antimicrobial compound of the invention is selected from:




wherein each of R1 and R2 is independently hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In another embodiment, the volatile antimicrobial compound of the invention is selected from:




wherein each of R1 and R2 is independently hydrogen, substituted or unsubstituted alkyl, or substituted or unsubstituted heteroalkyl.

In one embodiment, Rb is selected from fluorine and chlorine. In another embodiment, Rb is selected from OR26 and NR27R28. In another embodiment when Rb is OR26, R26 is selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. In another embodiment when Rb is OR26, R26 is selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl and substituted or unsubstituted cycloalkyl. In another embodiment when Rb is OR26, R26 is unsubstituted C1-C6 alkyl. In another embodiment when Rb is OR26, R26 is unsubstituted cycloalkyl. In another embodiment when Rb is OR26, R26 is alkyl, substituted with a member selected from substituted or unsubstituted C1-C6 alkoxy. In another embodiment when Rb is OR26, R26 is alkyl, substituted with at least one halogen. In another embodiment when Rb is OR26, R26 is alkyl, substituted with at least one oxo moiety.
In another embodiment when Rb is OR26, R26 is a member selected from —CH3, —CH2CH3, —(CH2)2CH3, —CH(CH3)2, —CH2CF3, —CH2CHF2, —CH2CH2(OH), —CH2CH2(OCH3), —CH2CH2(OC(CH3)2), —C(O)CH3, —CH2CH2OC(O)CH3, —CH2C(O)OCH2CH3, —CH2C(O)OC(CH3)3, —(CH2)3C(O)CH3, —CH2C(O)OC(CH3)3, cyclopentyl, cyclohexyl,




In another embodiment when Rb is NR27R28, R27 and R28 are members independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. In another embodiment when Rb is NR27R28, R27 is H or unsubstituted alkyl; and R28 is unsubstituted alkyl or alkyl substituted with a member selected from hydroxyl, phenyl, unsubstituted alkoxy and alkoxy substituted with a phenyl. In a further embodiment when Rb is NR27R28, R27 is H or CH3.
In another embodiment when Rb is NR27R28, R27 and R28 are independently selected from substituted or unsubstituted alkyl. In another embodiment when Rb is NR27R28, R27 is unsubstituted alkyl; and R28 is substituted or unsubstituted alkyl. In another embodiment when Rb is NR27R28, R27 is unsubstituted alkyl; and R28 is alkyl, substituted with a member selected from substituted or unsubstituted alkoxy and hydroxyl. In another embodiment when Rb is NR27R28, R27 is unsubstituted alkyl; and R28 is alkyl, substituted with unsubstituted alkoxy. In another embodiment when Rb is NR27R28, R27 is unsubstituted alkyl; and R28 is alkyl, substituted with alkoxy, substituted with phenyl. In another embodiment when Rb is NR27R28, R27 is unsubstituted alkyl; and R28 is alkyl, substituted with unsubstituted alkoxy. In another embodiment when Rb is NR27R28, R27 and R28 together with the nitrogen to which they are attached, are combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring. In another embodiment when Rb is NR27R28, R27 and R28 together with the nitrogen to which they are attached, are combined to form a 5- or 6-membered substituted or unsubstituted heterocycloalkyl ring.
In another embodiment, Rb is selected from N(CH3)2, N(CH3)(CH2CH2(OCH3)), N(CH3)(CH2CH2OH), NH2, NHCH3, NH(CH2CH2(OCH3)), NH(CH2CH2(OCH2Ph), NH(CH2Ph), NH(C(CH3)3) and NH(CH2CH2OH). In another embodiment, Rb is selected from




Additional antimicrobial compounds are also disclosed previously in U.S. Pat. No. 8,039,450, and patent application publication US 2009/0291917, the contents of which are hereby incorporated by reference in their entireties.
In one aspect, the volatile antimicrobial compound of the invention has the structure of formula (A):

RA-LA-G-LB-RB  (A),

wherein

each of RA and RB is independently a radical comprising an oxaborole moiety;

each of LA and LB is independently —O— or





each of R and R′ is independently hydrogen, unsubstituted or substituted C1-18-alkyl, arylalkyl, aryl, or heterocyclic moiety; and

G is a substituted or unsubstituted C1-18-alkylene, arylalkylene, arylene, or heterocyclic moiety; and pharmaceutically acceptable salts thereof.

In one embodiment, the volatile compound is an antimicrobial compound. In another embodiment, the volatile compound has use against pathogens affecting meats, plants, or plant parts, comprising contacting the meats, plants, or plant parts. In another embodiment, the -LA-G-LB- portion of formula (A) is derived from a diol or diamine compound. In a further embodiment, the diol compound is selected from the group consisting of 1,2-ethylene glycol; 1,2-propylene glycol; 1,3-propylene glycol; 1,1,2,2-tetramethyl-1,2-ethylene glycol; 2,2-dimethyl-1,3-propylene glycol; 1,6-hexanediol; 1,10-decanediol; and combinations thereof. In another embodiment, the diamine compound is 1,2-ethylene diamine; 1,3-propylene diamine; or combinations thereof. In another embodiment, LA and LB are identical. In another embodiment, LA and LB are different. In another embodiment, each of LA and LB is independently —O— or —NH—. In another embodiment, LA and LB are identical. In another embodiment, LA and LB are different.
In another embodiment, the -LA-G-LB- portion of formula (A) comprises asymmetrical functional groups (i.e., asymmetrical bridges). In a further embodiment, the -LA-G-LB- portion of formula (A) comprises one hydroxyl group and one amine group. In a further embodiment, the -LA-G-LB- portion of formula (A) comprises an amino alcohol. In another embodiment, G is a substituted or unsubstituted C1-8-alkylene. In a further embodiment, G is a substituted or unsubstituted C1-4-alkylene. In a further embodiment, G is selected from —CH2—, —CH2—CH2—, and —CH2—CH2—CH2—.
In another embodiment, each of RA and RB is independently derived from the group consisting of 5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole; 5-chloro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole; 1,3-dihydro-1-hydroxy-2,1-benzoxaborole; and combinations thereof. In another embodiment, RA and RB are identical. In another embodiment, RA and RB are different.
In another embodiment, at least one of RA and RB is selected from formula (B), (C), or (D):




wherein q1 and q2 are independently 1, 2, or 3;
q3=0, 1, 2, 3, or 4;
B is boron;
M is hydrogen, halogen, —OCH3, or —CH2—O—CH2—O—CH3;
M1 is halogen, —CH2OH, or —OCH3;
X is O, S, or NR1c, wherein R1c is hydrogen, substituted alkyl, or unsubstituted alkyl;
R1, R1a, R1b, R2, and R5 are independently hydrogen, OH, NH2, SH, CN, NO2, SO2, OSO2OH, OSO2NH2, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
and pharmaceutically acceptable salts thereof.
Additional oxaborole moieties are also disclosed previously in U.S. Pat. No. 8,106,031, and International Patent Application WO 2007/131072A2, the contents of which are hereby incorporated by reference in their entireties.
In another embodiment, at least one of RA and RB has a structure of formula (F):




wherein A and D together with the carbon atoms to which they are attached form a 5, 6, or 7-membered fused ring which may be substituted by C1-6-alkyl, C1-6-alkoxy, hydroxy, halogen, nitro, nitrile, amino, amino substituted by one or more C1-6-alkyl groups, carboxy, acyl, aryloxy, carbonamido, carbonamido substituted by C1-6-alkyl, sulphonamido or trifluoromethyl or the fused ring may link two oxaborole rings; B is boron;
X1 is a group —CR7R8 wherein R7 and R8 are each independently hydrogen, C1-6-alkyl, nitrile, nitro, aryl, aralkyl or R7 and R8 together with the carbon atom to which they are attached form an alicyclic ring; and
and pharmaceutically acceptable salts thereof.
Additional oxaborole moieties are also disclosed previously in U.S. Pat. No. 5,880,188, the content of which is hereby incorporated by reference in its entirety.
In another embodiment, at least one of RA and RB is selected from formula (E) or (G):




wherein each R6 is independently hydrogen, alkyl, alkene, alkyne, haloalkyl, haloalkene, haloalkyne, alkoxy, alkeneoxy, haloalkoxy, aryl, heteroaryl, arylalkyl, arylalkene, arylalkyne, heteroarylalkyl, heteroarylalkene, heteroarylalkyne, halogen, hydroxyl, nitrile, amine, ester, carboxylic acid, ketone, alcohol, sufide, sulfoxide, sulfone, sulfoximine, sulfilimine, sulfonamide, sulfate, sulfonate, nitroalkyl, amide, oxime, imine, hydroxylamine, hydrazine, hydrazone, carbamate, thiocarbamate, urea, thiourea, carbonate, aryloxy, or heteroaryloxy;
n=1, 2, 3, or 4;
B is boron;
X2=(CR62)m where m=1, 2, 3, or 4; or




wherein R9 is CN, C(O)NR11R12, or C(O)OR3 wherein R3 is hydrogen, substituted alkyl, or unsubstituted alkyl,
X3 is N, CH and CR10;
R10 is halogen, substituted or unsubstituted alkyl, C(O)R14, C(O)OR14, OR14, NR14R15, wherein each of R11, R12, R14, and R15 is independently hydrogen, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, or substituted or unsubstituted heteroaryl;
and pharmaceutically acceptable salts thereof.
In a further embodiment when at least one of RA and RB has a structure of formula (G), R9 is CN and R10 is Rb.
In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment when at least one of RA and RB has a structure of formula (G), R9 is —COOR3 and R10 is Rb.
In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment, at least one of RA and RB has a structure selected from:




In another embodiment when at least one of RA and RB has a structure of formula (G), R9 is —CONR1R2 and R10 is Rb.
In another embodiment, each of RA and RB is independently selected from formula (B), (C), (D), (E), (F), or (G).
In another embodiment, the volatile compound of the invention is selected from:




In another embodiment, the volatile compound of the invention is selected from:




In another embodiment, the volatile compound of the invention is selected from:




In one embodiment, Rb is selected from fluorine and chlorine. In another embodiment, Rb is selected from OR20 and NR21R22. In another embodiment when Rb is OR20, R20 is selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. In another embodiment when Rb is OR20, R20 is selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl and substituted or unsubstituted cycloalkyl. In another embodiment when Rb is OR20, R20 is unsubstituted C1-6 alkyl. In another embodiment when Rb is OR20, R20 is unsubstituted cycloalkyl. In another embodiment when Rb is OR20, R20 is alkyl, substituted with a member selected from substituted or unsubstituted C1-6 alkoxy. In another embodiment when Rb is OR20, R20 is alkyl, substituted with at least one halogen. In another embodiment when Rb OR20, R20 is alkyl, substituted with at least one oxo moiety.
In another embodiment when Rb is OR20, R20 is a member selected from —CH3, —CH2CH3, —(CH2)2CH3, —CH(CH3)2, —CH2CF3, —CH2CHF2, —CH2CH2(OH), —CH2CH2(OCH3), —CH2CH2(OC(CH3)2), —C(O)CH3, —CH2CH2OC(O)CH3, —CH2C(O)OCH2CH3, —CH2C(O)OC(CH3)3, —(CH2)3C(O)CH3, —CH2C(O)OC(CH3)3, cyclopentyl, cyclohexyl,




In another embodiment when Rb is NR21R22, R21 and R22 are members independently selected from H, substituted or unsubstituted alkyl, substituted or unsubstituted heteroalkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted heterocycloalkyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl. In another embodiment when Rb is NR21R22, R21 is H or unsubstituted alkyl; and R22 is unsubstituted alkyl or alkyl substituted with a member selected from hydroxyl, phenyl, unsubstituted alkoxy and alkoxy substituted with a phenyl. In a further embodiment when Rb is NR21R22, R21 is H or CH3.
In another embodiment when Rb is NR21R22, R21 and R22 are independently selected from substituted or unsubstituted alkyl. In another embodiment when Rb is NR21R22, R21 is unsubstituted alkyl; and R22 is substituted or unsubstituted alkyl. In another embodiment when Rb is NR21R22, R21 is unsubstituted alkyl; and R22 is alkyl, substituted with a member selected from substituted or unsubstituted alkoxy and hydroxyl. In another embodiment when Rb is NR21R22, R21 is unsubstituted alkyl; and R22 is alkyl, substituted with unsubstituted alkoxy. In another embodiment when Rb is NR21R22, R21 is unsubstituted alkyl; and R22 is alkyl, substituted with alkoxy, substituted with phenyl. In another embodiment when Rb is NR21R22, R21 is unsubstituted alkyl; and R22 is alkyl, substituted with unsubstituted alkoxy. In another embodiment when Rb is NR21R22, R21 and R22 together with the nitrogen to which they are attached, are combined to form a 4- to 8-membered substituted or unsubstituted heterocycloalkyl ring. In another embodiment when Rb is NR21R22, R21 and R22 together with the nitrogen to which they are attached, are combined to form a 5- or 6-membered substituted or unsubstituted heterocycloalkyl ring.
In another embodiment, Rb is selected from N(CH3)2, N(CH3)(CH2CH2(OCH3)), N(CH3)(CH2CH2OH), NH2, NHCH3, NH(CH2CH2(OCH3)), NH(CH2CH2(OCH2Ph), NH(CH2Ph), NH(C(CH3)3) and NH(CH2CH2OH). In another embodiment, Rb is selected from




Additional oxaborole moieties are also disclosed previously in U.S. Pat. No. 8,039,450, and patent application publication US 2009/0291917, the contents of which are hereby incorporated by reference in their entireties.
In another embodiment, the compound provided has a structure of formula (A1) or (A2):




wherein each of A1, A2, D1, and D2 is independently hydrogen, substituted or unsubstituted C1-18-alkyl, arylalkyl, aryl, or heterocyclic; or A1 and D1, or A2 and D2 together form a 5, 6, or 7-membered fused ring which is substituted or unsubstituted;
each of R13, R16, R17, R18, and R19 is independently hydrogen, substituted or unsubstituted C1-6-alkyl, nitrile, nitro, aryl or aryl alkyl; or R16 and R17, or R18 and R19 together form an alicyclic ring which is substituted or unsubstituted;
B is boron; and
G is a substituted or unsubstituted C1-18-alkylene, arylalkylene, arylene, or heterocyclic moiety.
In another embodiment, each of RA and RB is independently




wherein X2=(CR62)m and m=1, 2, 3, or 4.

In another embodiment, each of RA and RB is independently




In another embodiment, the compound provided has the structure of




Additional oxaborole moieties are also disclosed previously in U.S. Pat. No. 5,880,188, the content of which is hereby incorporated by reference in its entirety.
Also provided are methods for treating human infections, methods for using a volatile antimicrobial compound against human pathogens, and/or methods for treating human diseases.
In one embodiment, the method provided comprises

    
    
        (a) providing a volatile compound as provided herein in gaseous form; and
        (b) contacting or treating affected areas with an effective amount of the volatile compound as provided herein in gaseous form.
    
    


In another embodiment, the method provided comprises

    
    
        (a) placing affected areas in a container, confined or closed environment; and
        (b) introducing into the container, confined or closed environment and in contact with the affected areas an effective amount of the volatile compound as provided herein in gaseous form.
    
    


In another embodiment, the method provided comprises contacting or treating the affected areas with an atmosphere comprising an effective amount of the volatile compound as provided herein in gaseous form.
In one embodiment, the contacting comprises applying the volatile antimicrobial compound to the surface of a material or absorbing or imbedding it into a material by ways selected from the group consisting of spray, mist, drench, or direct gaseous treatment, and combinations thereof. In a further embodiment, the gas treatment is released from the group consisting of release from a sachet, release from a synthetic or natural film, fibrous material, and/or release from a liner or powder and combinations thereof.
Description of common human infections. Vaginal yeast infections—most women have a vaginal yeast infection at some time. Candida albicans, the causal agent of candidiasis, is a common type of fungus. It is often found in small amounts in the vagina, mouth, digestive tract, and on the skin. Usually it does not cause disease or symptoms. Candida and the many other germs that normally live in the vagina keep each other in balance. However, sometimes the number of Candida albicans increases, leading to a yeast infection.
Vaginosis can be treated with antibiotics metronidazole (for example Flagyl and MetroGel), clindamycin (for example Cleocin and Clindesse), and tinidazile (for example Tindamax), which can be taken orally (by mouth) or vaginally. Combinations of these agents and the volatile compounds disclosed herein (for example benzoxaborole) are also provided.
Athlete's foot (otherwise known as ringworm of the foot, tinea pedis, tinea pedum, or moccasin foot) is a common and contagious dermatophytic fungal infection of the skin that causes scaling, flaking, and itching of the affected areas. Symptoms are caused by fungi for example Epidermophyton floccosum, or fungi of the Trichophyton genus including T. rubrum or T. mentagrophytes. The disease is typically transmitted in moist communal areas where people walk barefoot, such as showers or bathhouses, and requires a warm moist environment, (e.g., the inside of a shoe) to incubate. The condition typically affects the feet, but may infect or spread to other areas of the body such as the groin and tends to spread to areas of skin that are kept hot and moist, for example with insulation, body heat, and sweat. The fungal agents responsible for infection may be picked up by walking barefoot in an infected area or using an infected towel. Infection can be prevented by limiting the use of occlusive footwear and remaining barefoot. Tinea is the name of a group of diseases caused by a fungus. Types of tinea include ringworm, athlete's foot and jock itch. These infections are usually not serious, but they can be uncomfortable. Affected areas may include skin (red skin rash that forms a ring around normal-looking skin); head (scalp ringworm causes itchy, red patches on your head—it can leave bald spots); foot and/or toes (Athlete's foot may cause itching, burning and cracked skin between your toes); and groin (jock itch causes an itchy, burning rash in your groin area).
Most cases of athlete's foot can be cured with over-the-counter antifungal products and basic good hygiene. Products are applied as antifungal powder, antifungal creams, and sprays applied directly to the infected area. Continue treatment for one to two weeks after the infection has cleared to prevent it from recurring. Combinations of these commonly used agents and the volatile compounds disclosed herein (for example benzoxaborole) are also provided.
Those skilled in the art would understand certain variation can exist based on the disclosure provided. Thus, the following examples are given for the purpose of illustrating the invention and shall not be construed as being a limitation on the scope of the invention or claims.
EXAMPLES
Example 1
For testing activity against fungi pathogens, an in vitro inhibition assay for volatile antimicrobial compounds is developed using 12-Well (7 milliliter (mL) volume per well) microtiter plates. A 3-mL volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 microliter (μL) of 1×106 per mL Botrytis cinerea spore suspension is spot pipetted to the center of the agar. For the first experiment, inoculated plates are allowed to germinate for 5 days at 4° C. For the second experiment, plates are inoculated immediately prior to volatile fungicide treatment. Small Whatman #1 filter disks (Cat. No. 1001-0155) are placed, in duplicate, on the underside of a polyethylene PCR plate sealing film.







TABLE 1







Results of in vitro assay for volatile fungicide










Rate of Compound A 
Botrytis inhibition



(mg per disk)
% (in vitro)














1.25
100%



0.63
100%



0.31
100%



0.16
100%



0.08
100%



0.04
100%



0.023
100%



0.01
100%



0.005
100%



0.0024
 85%



0.001
 69%



0.0006
 46%



Control
 0%










For determination of the minimum inhibitory concentration (MIC), Compound A (5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole) is diluted in acetone, and the appropriate amount of compound is added to disks in a dose dependent manner (1.25 to 0.0006 milligrams per disk (mg/disk)). The acetone is permitted to evaporate for 5 minutes. The headspace around the Botrytis cinerea inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide. Plates are inverted, placed over the treated disks and sealed to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 14 days of storage at 4° C., cultures are evaluated for percent growth relative to control. Regardless of whether the spores had germinated for 5 days, or if the treatment commenced soon after inoculation of the plates ( ̃15 minutes); there is 100% control of the fungal pathogen down to 0.005 mg.
Experimental results are summarized in Table 1. The results suggest that Compound A is able to kill Botrytis cinerea spores and inhibit mycelial growth at the same concentration. Thus, Compound A shows 100% efficacy in the in vitro inhibition of fungal growth at a rate of 0.005 mg/disk.




Compound B (2-(hydroxymethyl)phenylboronic acid cyclic monoester, a des-fluoro analogue of Compound A), is evaluated in a similar manner. The compound is applied to the Whatman filter paper at rates from 0.5 mg to 0.0039 mg/disk. Results show that Compound B inhibits 100% Botrytis cinerea at a rate of 0.0078 mg/disk.
Example 2
For testing activity against bacteria pathogens, 12-Well (7 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-mL volume of full-strength LB Agar is added to each well. After cooling, 15 μL of Escherichia coli, adjusted to an optical density of 0.02 to 0.035, and further diluted 1/10 is pipetted to the center of the agar and tilted to distribute uniformly. Small Whatman #1 filter disks (Cat. No. 1001-0155) are placed, in duplicate, on the underside of a polyethylene polymerase chain reaction (PCR) plate sealing film. For determination of the minimum inhibitory concentration (MIC), Compound A is diluted in acetone, and 5 mg of compound is added to the disks. The acetone is permitted to evaporate for 5 minutes. The headspace around the Escherichia coli inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide. Plates are inverted, placed over the treated disks and sealed to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of storage at 4° C., cultures are transferred to 23° C. for an additional 2 days, and then evaluated for colony growth relative to control. Experimental results are summarized in Table 2. The results suggest that Compound A is able to inhibit Escherichia coli.







TABLE 2







Results of in vitro assay for volatile fungicide










Rate of Compound A




(mg per disk)
Colony Rating







5.00
1



Untreated
3



Not Inoculated
0







Colony Rating:



0 = No colonies



1 = Micro colonies not connected



2 = Small colonies with some merging



3 = Large colonies merging together






Example 3
For testing activities against additional fungi pathogens, 12-Well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-mL volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 μL of 1×105 per mL Botrytis cinerea, Penicillium expansum, Alternaria alternata, Monilinia fructicola or Glomerella cingulata spore suspension is spot-pipetted to the center of the agar. Plates are inoculated immediately prior to volatile fungicide treatment. A Whatman #1 filter disk (Cat. No. 1001-0155) is placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), compounds are diluted in acetone, and the appropriate amount of compound is added to the disks in a dose dependent manner to achieve a final headspace concentration of 1142.9 to 0.6 mg/L. The acetone is permitted to evaporate for 5 minutes. The headspace around the inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide by inverting the plates over the treated disks and sealing to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of storage at 23° C., the cultures are evaluated for percent growth relative to control based on measurement of fungal colony diameter. Experimental results are summarized in Table 3. The results indicate that benzoxaborole compounds have excellent in vitro activity against five selected fungal pathogens.







TABLE 3







MIC (mg/L, headspace concentration) of numerous benzoxaborole compounds applied as


a volatile treatment against numerous fungal pathogens (Compound 10 is the same as Compound


A, and Compound 11 is the same as Compund B).










Cmpd
MIC (mg/L)













Structure
#
BOTRCI
PENIEX
ALTEAL
MONIFC
GLOMCI









 6
2.2
17.9 
4.5
8.9
17.9 


 






 7
2.2
17.9 
8.9
8.9
71.4 


 






 8
2.2
35.7 
8.9
4.5
71.4 


 






 9
2.2
8.9
8.9
8.9
35.7 


 






 10
2.2
2.2
<0.6 
<0.6 
<0.6 


 






 11
4.5
17.9 
4.5
2.2
35.7 


 






 30
2.2
8.9
2.2
2.2
n/a


 






 34
<0.6 
2.2
2.2
n/a
n/a


 






200
10.6 
68.3 
7.3
6.3
n/a


 






201
3.8
29.5 
16.1 
8.5
9.3





BOTRCI = Botrytis cinerea


PENIEX = Penicillium expansum


ALTEAL = Alternaria alternata


MONIFC = Monilinia fructicola


GLOMCI = Glomerella cingulata






Example 4
12-Well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-mL volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 μL of 1×105 per mL Botrytis cinerea and Penicillium expansum spore suspension is spot-pipetted to the center of the agar. Plates are inoculated immediately prior to volatile fungicide treatment. A Whatman #1 filter disk (Cat. No. 1001-0155) is placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), compounds are diluted in acetone, and the appropriate amount of compound is added to the disks in a dose dependent manner to achieve a final headspace concentration of 35.7 to 0.03 mg/L. The acetone is permitted to evaporate for 5 minutes. The headspace around the inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide by inverting the plates over the treated disks and sealing to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of storage at 23° C., the cultures are evaluated for percent growth relative to control based on measurement of fungal colony diameter. Experimental results are summarized in Table 4. The results indicate that numerous benzoxaborole compounds have excellent in vitro activity against two selected fungal pathogens.







TABLE 4







MIC (mg/L) of numerous benzoxaborole compounds applied as a volatile treatment against


Botrytis cinerea and Penicillium expansum fungal pathogens.










Cmpd
MIC (mg/L)










Structure
#
BOTRCI
PENIEX









 21
1.1
35.7 


 






 22
4.5
35.7 


 






 38
0.6
8.9


 






 39
0.6
8.9


 






 54
0.6
4.5


 






 55
4.5
>35.7 


 






 62
2.2
8.9


 






 63
1.1
17.9 


 






 64
1.1
8.9


 






 72
35.7 
>35.7 


 






 73
35.7 
>35.7 


 






 74
2.2
35.7 


 






 86
0.6
8.9


 






 87
0.6
8.9


 






105
0.6
4.5


 






114
17.9 
>35.7 


 






115
0.6
8.9


 






116
1.1
8.9


 






121
4.5
17.9 


 






122
2.2
17.9 


 






124
4.5
8.9


 






127
2.2
4.5


 






129
4.5
8.9


 






130
1.1
4.5


 






132
1.1
4.5


 






133
8.9
35.7 


 






134
17.9 
>35.7 


 






135
17.9 
>35.7 


 






136
8.9
>35.7 


 






137
0.3
1.1


 






202
35.7 
142.9 


 






203
8.9
142.9 


 






204
8.9
>35.7 





BOTRCI = Botrytis cinerea (gray mold)


PENIEX = Penicillium expansum (blue mold)






Example 5
12-Well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds A and B against additional fungal pathogens.
A 3-mL volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 μL of 1×105 spores per mL of Botrytis cinerea, Penicillium expansum, Alternaria alternata, Glomerella cingulata, Penicillium digitatum, Monilinia fruticola, Aspergillus brasiliensis, Colletotrichum acutatum, Fusarium sambucinum, Phytophthora capsici, Geotrichum candidum, Aspergillus niger, Diplodia gossypina or Diaporthe citrii suspension is spotted onto the center of the agar. A Whatman #1 filter disk (Cat. No. 1001-0155) is placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), test compounds are diluted in acetone, and the appropriate amount of compound is added to the disks in a dose dependent manner to achieve a final headspace concentration of 35.7 to 0.03 mg/L. The acetone is permitted to evaporate for five minutes. The headspace around the inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide by inverting the plates over the treated disks and sealing to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of storage at 23° C., cultures are evaluated for percent growth relative to control. Results shown in Table 5 demonstrate the ability of benzoxaborole compounds A and B to control the growth of numerous fungal pathogens through volatile activity.







TABLE 5







MIC (mg/L) of Compounds A and B applied as a


volatile against numerous fungal pathogens










Compound A
Compound B


Pathogens
MIC
MIC












B. cinerea
2.2
4.5


P. expansum
1.1
8.9


M. fruticola
2.2
1.1


A. alternata
2.2
2.2


G. cingulata
17.9
35.7


P. digitatum
2.2
4.5


A. brasiliensis
2.2
0.6


C. acutatum
4.4
8.9


F. sambucinum
1.1
4.5


P. capsici
1.1
n/a


G. candidum
8.9
8.9


A. niger
2.2
1.1


M. piriformis 
1.1
2.2


D. gossypina
1.1
4.5


D. citrii
2.2
17.9









Example 6
12-Well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial Compound A against additional bacterial pathogens. A 3-mL volume of Nutrient agar is added to each well and allowed to dry before introducing the pathogen. Escherichia coli, Pectobacterium carotovorum, Xanthomonas axonopodis and Salmonella enterica cell suspensions are adjusted to an optical density of 0.2 to 0.35, and further diluted 1/10, and 15 μL is pipetted to the center of each well and tilted to distribute uniformly. A Whatman #1 filter paper (CAT 1001-0155) is placed on the underside of a polyethylene PCR plate sealing film. For determination of minimum bactericidal concentration (MBC), Compound A is diluted in acetone, and 50 μL are applied to the disks, in duplicate, in a dose dependent manner in order to achieve a final headspace concentration of 71.4 to 0.03 mg/L. The acetone is permitted to evaporate for 5 minutes. The films with the treated disks are then applied over the inoculated plates and sealed. Plates are inverted, and incubated at 23° C. for 48 hours. After the incubation period, the bacteria colonies are dislodged in sterile water containing tween 80 (0.001%) and the optical density (OD; 600 nm) is determined. Results are summarized in Table 6, where the headspace concentration required to control at least 80% of bacterial growth is reported. Compound A shows good antimicrobial activity against numerous bacteria in this in vitro assay.







TABLE 6







Rate (mg/L) of Compound A offering at least 80% control


against bacterial pathogens












E. coli
P. carotovorum
X. axonopodis
S. enterica







35.7
2.2
4.5
17.9










Example 7
An in vitro assay is used to evaluate the ability of Compound A to volatilize from different materials and control fungal growth. PTFE-Coated Fiberglass (8577K81), Fiberglass (8816K1), Silica (8799K3), Aramid and Fiberglass blend (8821K4), Vinyl-Coated Polyester (8843K31), Acrylic-Coated Fiberglass (8838K2), Silicone-Coated Fiberglass (87815K1), Aramid (1206T1) (all McMaster-Carr, Santa Fe Springs, Calif.), Polyethylene PCR sealing film, Cellulose (Whatman #1, Cat no. 1001-0155), PTFE (Cole Parmer, Cat no. 36229-32), and Category-1 cardboard were cut into disks of 15 mm diameter. 12-Well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-mL volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 μL of 1×105 per mL Botrytis cinerea spore suspension is spot-pipetted to the centre of the agar. Plates are inoculated immediately prior to volatile fungicide treatment.







TABLE 7







Effects of different materials on the volatile release of


Compound A and the subsequent in vitro inhibition (MIC) of 


Botrytis cinerea.










Material
MIC (mg/L)














Polyethylene PCR Film
0.28



PTFE- Coated Fiberglass
0.56



Fiberglass
0.56



Cellulose
0.56



Silica
0.56



Aramid and Fiberglass
0.56



Vinyl-Coated Polyester
0.56



Acrylic-Coated Fiberglass
0.56



Silicone- Coated Fiberglass
0.56



PTFE
1.1



Cardboard
2.2



Aramid
2.2










The various materials are placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), compounds are diluted in acetone, and the appropriate amount of compound is added to the materials in a dose dependent manner to achieve a final headspace concentration of 35.7 to 0.03 mg/L. The acetone is permitted to evaporate for five minutes. The headspace around the Botrytis cinerea inoculum is then sealed inside the well by the film with the adhering disk of material containing the fungicide. Plates are inverted, placed over the treated disks and sealed to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After three days of storage at 23° C., the cultures are evaluated for percent growth relative to control based on measurement of fungal colony diameter. Experimental results are summarized in Table 7. The results indicate that Compound A can volatilize from numerous materials to inhibit the in vitro growth of Botrytis cinerea with similar levels of control.
Example 8
An in vitro assay is used to evaluate the ability of compound A to volatilize from different materials and control fungal growth. Cardboard box (Category 1), PET plastic (Polyethylene terepthalate-PET) and Polyethylene are used. The materials are cut into equal dimensions (10×19 cm2) and placed inside a 36-L acrylic desiccator cabinet (Fisher Scientific, cat no. 08-642-23C) in duplicate.







TABLE 8







Effects of different materials on the volatile release of


Compound A and the subsequent in vitro inhibition of 


Botrytis cinerea










Material 
Incidence (%)












Rate (mg/L)
Clamshell
Cardboard
Polyethylene
















0.3
4.1
9.3
4.9



0.06
100.0
91.7
86.7



0.012
100.0
100.0
99.0










Compound A is dissolved in acetone and 100 μL of the solution pipetted into a glass tube. The acetone is allowed to evaporate for 1 minute at 60° C. Compound A is then introduced as a gas into the cabinets by a sublimation device (copper tube heated to 180° C. with fan flow at 0.5 L/min) to achieve a final headspace concentration of 0.3, 0.06 and 0.012 mg/L). The chambers are then incubated at 23° C. for 24 hours, then treated materials are carefully removed and placed inside a clean 10.8 cup SnapWare airtight container (Model #109842) containing a 10-cm diameter Petri dish with PDA and inoculated with 1 μL of 1×10 spores/mL of B. cinerea. The containers are then tightly sealed for 3 days at 23° C. After 3 days of storage, cultures are evaluated for percent growth relative to control. Table 8 demonstrates the ability of benzoxaborole compounds A to control the growth of B. cinerea through volatile activity.
Example 9
Preparation of Sample 1
3.20 g of 5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole (21.2 mmol) and 3.20 g of ethylene glycol (51.6 mmol) are heated in 40 g of toluene. The toluene water azeotrope is distilled out of the system until the head temperature reached 110° C. The toluene is removed via rotary evaporator and the excess ethylene glycol is removed by kugelrohr distillation at about 20 torr and 100° C. bath temperature. Recrystallization from toluene generates 2.95 g of white crystals, mp 145-149° C. Proton nmr shows spectra and integration consistent with the two to one product below:




Example 10
Preparation of Sample 2
3.00 g of 1,3-dihydro-1-hydroxy-2,1-benzoxaborole (22.4 mmol) and 3.00 g of ethylene glycol (46.9 mmol) are heated in 40 g of toluene. The toluene water azeotrope is distilled out of the system until the head temperature reached 110° C. The toluene is removed via rotary evaporator and the excess ethylene glycol is removed by kugelrohr distillation at about 20 torr and 100° C. bath temperature. Recrystallization from toluene generates 2.49 g of white crystals, mp 118-120.5° C. Proton NMR shows spectra and integration consistent with the two to one product.
Example 11
Preparation of Sample 3
3.17 g of 5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole (21.0 mmol) and 3.22 g of pinacol (27.3 mmol) are heated in 40 g of toluene. The toluene water azeotrope is distilled out of the system until the head temperature reached 110° C. The toluene is removed via rotary evaporator and the excess pinacol is removed by kugelrohr distillation at about 20 torr and 120° C. bath temperature. Recrystallization from hexane generates 3.21 g of white crystals, mp 81-89° C. Proton NMR shows spectra and integration consistent with the two to one product.
Example 12
Preparation of Sample 4
3.0 g of 5-fluoro-1,3-dihydro-1-hydroxy-2,1-benzoxaborole (19.9 mmol) and 2.5 g of 1,2-propanediol (propylene glycol; 32.9 mmol) are heated in 40 g of toluene. The toluene water azeotrope is distilled out of the system until the head temperature reached 110° C. The toluene is removed via rotary evaporator and the excess propylene glycol is removed by kugelrohr distillation at about 20 torr and 110° C. bath temperature. Recrystallization from hexane generates 3.49 g of white crystals, mp 65.5-68.5° C. Proton NMR shows spectra and integration consistent with the two to one product.
Example 13
In Vitro Analysis
12-well (6.5 ml volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-ml volume of full-strength Potato Dextrose Agar (PDA) is added to each well. After cooling, 1 μL of 1×105 spores per ml Botrytis cinerea (ATCC #204446) spore suspension is spot pipetted to the agar in the centre of the well.







TABLE 9







Antimicrobial activities of Samples 1-4 (50 μl/disk)









MIC mg/l













Botrytis
Penicillium 
Alternaria 
Monilinia
Glomerella


ID
cinerea
expansum
alternata 
fructicola
cingulata















Sample 1
<0.6
8.9
2.2
—
—


Sample 2
<0.6
8.9
8.9
35.7
142.9


Sample 3
<0.6
4.5
2.2
—
—


Sample 4
<0.6
8.9
1.1
—
—









Whatman #1 filter disks (1.5 cm; Cat. No. 1001-0155) are placed on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), test compounds are diluted in acetone, in duplicate, and 50 μl of the compound solution is added to disks at concentrations that can vary from 0.001 mg/l to 1142.9 mg/l.







TABLE 10







Antimicrobial activities of Samples 1-4 (repeat test; 50 μl/disk)









MIC mg/l













Botrytis
Penicillium
Alternaria
Monilinia
Glomerella


ID
cinerea
expansum
alternata
fructicola
cingulata















Sample 1
0.6
8.9
>2.2
2.2
—


Sample 2
2.2
8.9
—
—
—


Sample 3
1.1
8.9
>2.2
1.1
—


Sample 4
0.6
8.9
>2.2
1.1
—









The acetone is permitted to evaporate for 5 minutes. The headspace around the Botrytis cinerea inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide. Plates are inverted to prevent any possibility of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of incubation at 23° C., cultures are evaluated for percent growth relative to control and determination of MIC. Samples 1-4 show good antimicrobial activity against Botrytis cinerea and/or other pathogens in this in vitro analysis. Minimum inhibitory concentrations (MIC) are shown in Tables 9 and 10 for results from two separate tests.
Example 14
Antimicrobial Activity Against Bacteria
12-well (6.5 ml volume per well) microtiter plates are used for the in vitro inhibition assay for volatile antimicrobial compounds. A 3-ml volume of full-strength LB Agar is added to each well. After cooling, 15 μL of Escherichia coli (ATCC #25922) adjusted to an optical density of 0.02 to 0.035, and further diluted 1/10 is pipetted to the centre of the agar. The plate is tilted to distribute bacteria uniformly. Whatman #1 filter disks (1.5 cm; Cat. No. 1001-0155) are placed on the underside of a polyethylene PCR plate sealing film. For determination of the minimum inhibitory concentration (MIC), test compounds are diluted in acetone, in duplicate, and 50 μl of compound is added to disks at concentrations that can vary from 0.015 to 35.7 mg/l. The acetone is permitted to evaporate for 5 minutes. The headspace around the Escherichia coli inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide. Plates are inverted, placed over the treated disks and sealed to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 2 days of incubation at 23° C., cultures were evaluated for colony growth relative to control. Samples 1-4 show good antimicrobial activity against Escherichia coli in this in vitro analysis.
Example 15
In order to demonstrate unexpected volatility of compound A (1-hydroxy-5-fluoro-1,3-dihydro-2,1-benzoxaborole) and a new method to apply the volatile compound A, another in vivo assay is developed to control Botrytis cinerea on strawberry. Eight strawberries (per repetition, in triplicate) are placed in an industry standard 1-lb PET clamshell with the stem-end facing down. A fresh wound on the upwards facing tip of the fruit is then inoculated with 20 μL of 1×105 spores per mL suspension of B. cinerea. 
Two identically prepared clamshells per repetition and treatment are then placed at the bottom of a 36-L acrylic desiccator cabinet (Fisher Scientific, No. 08-642-23C), and pre-cooled for 2 hours at 1° C. prior to treatment application. Compound A is then mixed with acetone and 100 μL of the mixture is pipetted into a small glass tube. This tube is then placed inside a pre-heated sublimation device (0.5′′ OD by 6′′ long thermostatically heated copper tube mounted to a 0.5 L/min low flow fan) set at 60° C. for 1-minute to allow the acetone to evaporate. Compound A is then introduced into the cabinet containing the clamshell by using the sublimation device set at 180° C. to achieve a final headspace concentration of 0.1 mg/L and equilibrated at 1° C. for 0.5 or 1 hour.







TABLE 11







Valatile application of Compound A to control B. cinerea infection









Clamshell
Treatment Time
Disease Severity (0 to 4)











Condition
(hour)
Day 1
Day 3
Day 5














Untreated
0
1.3
3.5
4.0


Treated
0.5
0.0
0.1
2.3



1
0.0
0.0
0.4


Untreated 
0.5
0.0
2.7
3.4


(fruit transfer)
1
0.0
0.1
1.6









After incubation, both clamshells are removed from the treatment chamber. One clamshell is undisturbed while the fruit from the second clamshell are immediately transferred into a new untreated clamshell. All clamshells are then held at 1° C. for 5 days and then evaluated during an additional 5 days at 21° C. During the 5 days at 21° C., the fruits are evaluated for gray mold severity (scale 0 to 4, with ≦1 indicating marketable fruit and 4 indicating ≧50% of fruit surface covered by pathogen). The results from Table 11 demonstrate the unexpected volatility of Compound A applied to clamshells and its ability to control B. cinerea development on strawberry throughout the 5 days of simulated marketing at 21° C. The treated clamshell produces marketable fruit up to 3 days with 0.5 hour treatment (0.1), whereas fruits in new clamshells are unmarketable (2.7). Similarly, the treated clamshell produces marketable fruit up to 5 days with 1 hour treatment (0.4), whereas fruits in new clamshells are unmarketable (1.6). Thus, treatments where berries remain in the treated clamshells have the best level of control due to the compound further volatilizing over time off of the clamshell surface.
Furthermore, berries that are placed into a new clamshell still benefit from the initial volatile treatment and demonstrated better control of Botrytis cinerea than untreated fruit, but the control is less than the treated clamshell since there is no longer any new exposure to the volatile substance off of the treated clamshell surface. Therefore, the results from this study provide evidence that a volatile application of Compound A provides control of fungal pathogen growth (untreated fruit transfer) and that Compound A deposited on clamshell surfaces will subsequently volatilize during 5 days at 21° C., providing additional useful control of Botrytis cinerea growth (treated).
Example 16
In order to demonstrate unexpected volatility of Compound A, another in vivo assay is developed to evaluate blue mold (Penicillium expansum) control on apple. Two apples are placed in a clamshell, and three fresh wounds are made near the equatorial region of each fruit. Each fruit wound is then inoculated with 20 μL of 1×106 spores per mL of Penicillium expansum suspension. The inoculum is allowed to dry for two hours prior to treatment application as a volatile or contact.







TABLE 12







Comparison of volatile and contact fungicidal activity of Compound A to


control Penicillim expansum infection










Treatment rate
Browning Rot (diameter; mm)












Assay
(mg/L)
Day 0
Day 2
Day 4
Day 7















Contact
0
0.0
6.4
15.7
29.6



2
0.0
3.7
15.5
23.3



10
0.0
2.2
8.0
20.2



50
0.0
0.7
5.7
15.0



250
0.0
0.0
4.3
11.8


Volatile
0
0.0
6.6
16.1
30.5



0.02
0.0
0.9
2.8
6.9



0.1
0.0
0.0
0.3
2.0



0.5
0.0
0.0
0.0
0.4



2.5
0.0
0.0
0.0
0.0









Volatile Assay: Clamshells are then placed at the bottom of a 36-L acrylic desiccator cabinet (Fisher Scientific, No. 08-642-23C). Compound A is mixed with acetone and 250 μL of the mixture is pipetted into a small glass tube. This tube is then placed inside a pre-heated sublimation device (0.5′′ OD by 6′′ long thermostatically heated copper tube mounted to a 0.5 L/min low flow fan) set at 60° C. for 1 minute to allow the acetone to evaporate. Compound A is then introduced into the cabinets containing the clamshells by using the sublimation device set at 180° C. to achieve a final headspace concentration of 2.5, 0.5, 0.1 or 0.02 mg/L. The chambers are then incubated at 1° C. for 5 days. After incubation, fruits are evaluated by measuring the diameter (mm) of rot development (browning) up to 7 days at 21° C.
Contact Assay: Compound A is dissolved in 85% methanol to achieve a final concentration of 250, 50, 10, or 2 mg/L. A 250 mL solution of each concentration is used to dip two inoculated apples, one minute per apple, performed in triplicate per rate. The dipped fruits are then placed back into the clamshells, which are then placed in a secondary container and incubated at 1° C. for 5 days. After incubation, fruits are evaluated for diameter (mm) of rot development (browning) up to 7 days at 21° C. Table 12 demonstrates the unexpected volatility of Compound A to control Penicillium expansum on apples during storage even when applied at 100× lower rate (v/v) than as a contact.
Example 17
In order to demonstrate unexpected volatility of Compound A, another in vivo assay is developed to evaluate gray mold (Botrytis cinerea) control on strawberry. Eight strawberries (per repetition, in triplicate) are placed in an industry standard 1-lb PET clamshell with the stem-end facing down. A fresh wound on the upwards facing tip of the fruit is then inoculated with 20 μL of 1×105 spores per mL suspension of B. cinerea. The inoculum is allowed to dry for two hours prior to treatment application as a volatile or contact.







TABLE 13







Comparison of volatile and contact fungicidal activity of Compound A to


control Botrytis cinerea infection










Treatment 
Disease Severity (0 to 4)













Assay 
rate (mg/L)
Day 0
Day 1 
Day 2
Day 3
Day 4
















Contact
0
0.0
0.0
0.8
1.1
2.0



2
0.0
0.0
0.6
1.1
1.9



10
0.0
0.0
0.0
0.3
1.0



50
0.0
0.0
0.0
0.0
0.0



250
0.0
0.0
0.0
0.0
0.0


Volatile 
0
0.0
0.1
0.9
1.4
2.3



0.02
0.0
0.0
0.1
0.2
0.7



0.1
0.0
0.0
0.0
0.0
0.0



0.5
0.0
0.0
0.0
0.0
0.0



2.5
0.0
0.0
0.0
0.0
0.0









Volatile Assay: Clamshells are then placed at the bottom of a 36-L acrylic desiccator cabinet (Fisher Scientific, No. 08-642-23C). Compound A is mixed acetone and 250 μL of the mixture is pipetted into a small glass tube. This tube is then placed inside a pre-heated sublimation device (0.5′′ OD by 6′′ long thermostatically heated copper tube mounted to a 0.5 L/min low flow fan) set at 60° C. for 1-minute to allow the acetone to evaporate. Compound A is then introduced into the cabinets containing the clamshells by using the sublimation device set at 180° C. to achieve a final headspace concentration of 2.5, 0.5, 0.1 or 0.02 mg/L. The chambers are then incubated at 1° C. for 5 days. After incubation, fruits are evaluated for disease (scale 0 to 4, with ≦1 indicating marketable fruit and 4 indicating ≧50% of fruit surface covered by pathogen) up to 4 days at 21° C.
Contact Assay: Compound A is dissolved in 85% methanol to achieve a final concentration of 250, 50, 10, or 2 mg/L. A 250 mL solution of each concentration is used to dip eight inoculated strawberry fruit for one-minute, performed in triplicate per rate. The dipped fruits are then placed back into the clamshells, which are then placed in a secondary container and incubated at 1° C. for 5 days. After incubation, fruits are evaluated for disease severity (scale 0 to 4, with ≦1 indicating marketable fruit and 4 indicating ≧50% of fruit surface covered by pathogen) up to 4 days at 21° C. Table 13 demonstrates the unexpected volatility of Compound A to control Botrytis cinerea on strawberries during storage even when applied at 100× lower rate (v/v) than as a contact.
Example 18
An in vitro assay was performed comparing the volatile and contact activity of various benzoxaborole compounds to demonstrate the activity of compound 10 relative to other similar structures from the chemical class.
Volatile assay: 12-well (6.5 mL volume per well) microtiter plates are used. A 3-mL volume of half strength PDA is added to each well. After cooling, 1 μL of 1×105 spores per mL of Botrytis cinerea or Penicillium expansum suspension is spotted to the center of the agar. A Whatman #1 filter disk (Cat. No. 1001-0155) is placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. Test compounds are mixed with acetone and the mixtures are added to disks in a dose dependent manner to achieve a final headspace concentration of 35.7 to 0.03 mg/L. The acetone is permitted to evaporate for 5 minutes. The headspace around the inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide. Plates are inverted, placed over the treated disks, and sealed to prevent any of the chemical from flaking from the disk and falling onto the inoculated agar. After 3 days of incubation at 23° C., cultures are evaluated for percent growth relative to the acetone only control.







TABLE 14







Comparison of contact and volatile activity of selected benzoxaborole


compounds









Compound
Contact MIC (mg/L)
Volatile MIC (mg/L)











ID
B. cinerea
P. expansum
B. cinerea 
P. expansum














 6
2.0
2.0
4.5
17.9


 10*
<0.08
0.4
0.3
2.2


 11*
10
2.0
4.5
17.9


 31
0.4
2.0
0.6
8.9


 33
0.4
2.0
0.6
8.9


 34
2.0
0.4
0.6
2.2


121
10.0
10.0
4.5
17.9


124
2.0
2.0
4.5
8.9


130
2.0
0.4
1.1
4.5


132
2.0
2.0
1.1
4.5


135
2.0
2.0
17.9
>35.7





*Compound 10 is identical to Compound A; Compound 11 is identical to Compound B






Contact assay: 6-well (16.5 mL volume per well) microtiter plates are used for an in vitro inhibition assay. Half-strength Potato Dextrose Agar (PDA) is amended with a mixture of one of the test compounds with acetone or methanol to a final concentration of 50 to 0.08 mg/L. A 7.5-mL volume of the amended media is added to each well of the microtiter plate. After drying, 1 μL of 1×105 spores per mL of B. cinerea or P. expansum suspension is spotted to the center of the agar. The plates are sealed with a clear film and incubated for 3 days at 23° C. After incubation, plates are evaluate for percent growth relative to acetone only control. Results are reported as the minimum inhibitory concentration (MIC) required for 100% control of pathogen growth. Table 14 shows the MIC results of numerous benzoxaboroles assayed for both contact and volatile activity. Results demonstrate that numerous structures in the benzoxaborole class of compounds have both contact and volatile activity.







TABLE 15







Compounds used in this example








Compound



ID
Benzoxaborole structure





 6 






 


 10* 






 


 11*






 


 31






 


 33






 


 34






 


121






 


124






 


130






 


132






 


135









*Compound 10 is identical to Compound A;


Compound 11 is identical to Compound B






Example 19
In order to demonstrate unexpected volatility of Compound A, another in vivo assay is developed to evaluate blue mold (Penicillium expansum) control on apple and pear, as well as green mold (Penicillium digitatum) control on orange. Two apples, pears or oranges are placed in a clamshell, and three fresh wounds are made near the equatorial region of each fruit. Each fruit wound is then inoculated with 20 μL of 1×106 spores per mL of Penicillium expansum or digitatum suspension, respectively. The inoculum is allowed to dry for two hours prior to treatment application as a volatile or contact.







TABLE 16







Comparison of Compound A with other fungicides in volatile 


and contact assays













Apple
Pear
Orange















Brown-
Sporula-
Brown-
Sporula-
Sporula-



Test 
ing
tion 
ing
tion 
tion


Assay
Compound
(mm)
(mm)
(mm)
(mm)
(mm)
















Volatile
Control
11.1
2.2
14.9
4.0
44.9



(acetone only)








Compound A
0.4
0.0
5.7
0.0
0.0



Control
9.7
2.3
13.4
4.4
39.3



(ethanol only)








Boscalid
10.3
2.4
14.3
3.6
30.3



Fludioxonil
11.2
3.1
12.8
2.8
40.8



Imazalil
11.1
3.0
14.3
3.4
41.4



Pyrimethanil
11.3
2.6
14.0
6.5
22.3



Thiabendazole
8.4
2.0
12.9
3.0
>50


Contact
Control
10.3
2.6
15.1
5.4
>50



(5% PG only)








Compound A
9.9
2.3
18.9
8.4
>50



Control
9.2
5.1
8.9
1.9
9.7



(ethanol only)








Boscalid
7.0
0.8
8.6
2.3
>50



Fludioxonil
2.9
0.0
3.3
0.0
8.3



Imazalil
6.9
0.9
7.9
1.0
0.0



Pyrimethanil
8.1
2.4
8.9
5.2
0.0



Thiabendazole
8.2
1.9
9.1
5.4
0.0









Volatile Assay: Clamshells are then placed at the bottom of a 2.55-L SnapWare airtight container (Model #109842). An appropriate amount of Compound A (dissolved in acetone), Boscalid, Fludioxinil, Imazalil, Pyrimethanil or Thiabendazole (methanol) is solubilized to achieve a treatment rate of 50 mg/L. (Compound A is not soluble in methanol at room temperature). The solutions are pipetted into Whatman filter disks mounted to the inside lid of the container. The chambers are then incubated at 1° C. for 5 days, removed to 21° C., and evaluated on day 3 by determining the diameter (mm) of rot development (browning) or sporulation.
Contact Assay: Compound A is dissolved in 5% propylene glycol, whereas all other actives are dissolved in 85% methanol at a rate to achieve a final concentration of 250, 50, 10, or 2 mg/L (Compound A is not soluble in methanol at room temperature). A 250 mL solution of each concentration is used to dip two inoculated fruits, one minute per fruit, performed in triplicate per rate. The dipped fruits are then placed back into the clamshells and then into the SnapWare container and incubated at 1° C. for 5 days. The containers are then incubated at 1° C. for 5 days, removed to 21° C., and evaluated on day 3 by determining the diameter (mm) of rot development (browning) or sporulation. Table 16 demonstrates the unexpected volatility of Compound A to control Penicillium expansum on apples and pears, as well as Penicillium digitatum on oranges. Volatile application of Compound A results in excellent inhibition of browning and sporulation, whereas all other active ingredients result in no or little inhibition. However, contact application of Compound A does not provide good inhibition of browning and sporulation as compared to other fungicides, demonstrating that the volatile application is important for the fungicidal activity of Compound A.
Example 20
In order to demonstrate the volatile activity of Compound A and Compound 31 relative to commercially registered fungicides, an in vitro assay is performed comparing the volatile and contact activity of the active ingredients.
Contact Assay: 12-well (6.5 mL volume per well) microtiter plates are used for the in vitro inhibition assay for Compounds A and 31, and compared to other registered fungicides (5-fluorocytosine, Amphotericin B, Caspofungin diacetate, Fluconazole and Itraconazole). Half-strength Potato Dextrose Agar (PDA) is amended with a mixture of one of the test compounds in acetone or methanol to a final concentration of 50, 10, 2, 0.4 or 0.08 mg/L. A 3-mL volume of the amended media is added to each well of the microtiter plate. After drying, a mycelial plug (5 mm diameter) is aseptically obtained from actively growing cultures of Epidermophyton floccus, Trichophyton rubrum, or Trichophyton mentagrophytes and placed at the center of the plate with the mycelial side in contact with the agar. The plates are sealed with a clear film and incubated inverted for 5 days at 28° C. After incubation, cultures are evaluated (mm diameter growth) for percent growth relative to control with results expressed as minimum inhibitory concentration (MIC) required to control 100% of pathogen growth.







TABLE 17







Comparison of Compounds A and 31 together with other fungicide to 


control selected fungal pathogens











MIC (mg/L)















Trichophyton




Epidermophyton 
Trichophyton
menta-


Assay
Test Compound
floccus
rubrum
grophytes














Contact
Compound A
2.0
2.0
2.0



Compound 31
n.d.
10.0
2.0



5-Fluorocytosine
>50
>50
>50



Amphotericin B
50.0
>50
>50



Caspofungin
2.0
10.0
50.0



Diacetate






Fluconazole
10.0
50.0
>50



Itraconazole
>50
>50
>50


Volatile
Compound A
2.0
2.0
2.0



Compound 31
n.d.
2.0
2.0



5-Fluorocytosine
>50
>50
>50



Amphotericin B
>50
>50
>50



Caspofungin
>50
>50
>50



Diacetate






Fluconazole
>50
>50
>50



Itraconazole
>50
>50
>50





n.d. = not determined






Volatile assay: 6-well (16.5 mL volume per well) microtiter plates are used in an in vitro inhibition assay for Compounds A and 31, and compared to other registered fungicides (5-fluorocytosine, Amphotericin B, aspofungin diacetate, Fluconazole and Itraconazole). A 7.5-mL volume of half strength PDA is added to each well. After drying, a mycelial plug (5 mm diameter) is aseptically obtained from actively growing cultures of Epidermophyton floccus, Trichophyton rubrum, or Trichophyton mentagrophytes and placed at the center of the plate with the mycelial side in contact with the agar. A Whatman #1 filter disk (Cat. No. 1001-325) is placed, in duplicate, on the underside of a polyethylene PCR plate sealing film. For determination of unexpected volatility, test compounds are mixed with acetone or methanol, and then added to disks in a dose dependent manner to achieve a final headspace concentration of 50, 10, 2, 0.4 or 0.08 mg/L. The acetone/methanol is permitted to evaporate for 5 minutes. The headspace around the inoculum is then sealed inside the well by the film with the adhering disk containing the fungicide and incubated inverted for 5 days at 28° C. After incubation, cultures are evaluated for percent growth relative to control with results expressed as minimum inhibitory concentration (MIC) required to control 100% of pathogen growth.
Volatile application of benzoxaboroles of Compounds A and 31 show significant fungicidal activities. Table 17 demonstrates the unexpected volatile activity of Compounds A and 31 with a minimum inhibitory concentration (MIC) of 2 mg/L for both Compound A and 31. In comparison, none of the commercial fungicide standards demonstrated any significant volatile activity where little or no fungicidal activity after volatile applications.

## Claims

1. A method of using a volatile antimicrobial compound against fungal pathogens, comprising:
contacting areas infected by the fungal pathogens with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form, the volatile antimicrobial compound having a structure of:




and pharmaceutically or agriculturally acceptable salts thereof,
wherein the areas infected by the fungal pathogens are selected from the group consisting of athlete's foot, tinea, or combinations thereof.

2. The method of claim 1, wherein the fungal pathogens are selected from the group consisting of Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.

3. The method of claim 1, further comprising coating a material for releasing the volatile antimicrobial compound in a gaseous form or absorbing the volatile antimicrobial compound into the material.

4. A method of using a volatile antimicrobial compound against fungal pathogens, comprising:
(a) mixing the volatile antimicrobial compound with an organic solvent to form an antimicrobial solution;
(b) applying the antimicrobial solution to a substrate or a device;
(c) placing the substrate or the device in close proximity to an infected area by the fungal pathogens so that the gaseous form of the antimicrobial compound releases near the infected area; and
(d) contacting the infected area with an atmosphere containing an effective amount of the volatile antimicrobial compound in gaseous form at a temperature between 1° C. and 50° C.;
wherein the volatile antimicrobial compound having a structure of:




and pharmaceutically or agriculturally acceptable salts thereof, wherein the areas infected by the fungal pathogens are selected from the group consisting of athlete's foot, tinea, or combinations thereof.

5. The method of claim 4, wherein the fungal pathogens are selected from the group consisting of Epidermophyton flocoosum, Trichiphyton rubrum, Trichophyton mentagrophytes, or combinations thereof.

6. The method of claim 4, wherein the organic solvent comprises acetone or ethanol.

7. The method of claim 4, wherein step (b) comprises coating the surface of the substrate or the device with the antimicrobial compound or absorbing the antimicrobial compound into the substrate or the device.

8. The method of claim 4, wherein the substrate or the device is selected from the group consisting of a shoe bed liner, a shoe insert, or a panty liner pad.

9. The method of claim 3, wherein the material is selected from the group consisting of a shoe bed liner, a shoe insert, or a panty liner pad.

10. The method of claim 1, wherein the volatile antimicrobial compound has the structure

11. The method of claim 1, wherein the volatile antimicrobial compound has the structure

12. The method of claim 4, wherein the volatile antimicrobial compound has the structure

13. The method of claim 4, wherein the volatile antimicrobial compound has the structure