# Patent

## Title
Therapeutic agent for malignant tumors expressing MHC class II

## Abstract

Provided is a novel therapeutic agent specific for a malignant tumor expressing MHC class II. The present invention provides an antibody recognizing a protein constituting MHC class II expressed on a malignant tumor, the antibody comprising at least one selected from heavy chain CDR1 (amino acid sequence represented by positions 49 to 54 of SEQ ID NO: 54), heavy chain CDR2 (amino acid sequence represented by positions 69 to 84 of SEQ ID NO: 54), heavy chain CDR3 (amino acid sequence represented by positions 117 to 128 of SEQ ID NO: 54), light chain CDR1 (amino acid sequence represented by positions 46 to 55 of SEQ ID NO: 56), light chain CDR2 (amino acid sequence represented by positions 71 to 77 of SEQ ID NO: 56), and light chain CDR3 (amino acid sequence represented by positions 100 to 108 of SEQ ID NO: 56).

## Background
TECHNICAL FIELD
The present invention relates to an antibody having cytotoxic activity specific for a malignant tumor expressing class II major histocompatibility complex (MHC class II), particularly, malignant lymphoma. The present invention also relates to a pharmaceutical composition and a reagent for detecting malignant lymphoma, comprising the antibody.
BACKGROUND ART
Malignant lymphoma is a tumor that originates from lymphoid tissues. Its types are classified into Hodgkin's lymphoma and non-Hodgkin's lymphoma. The malignant lymphoma is treated mainly by radiotherapy and chemotherapy using anticancer agents. The malignant lymphoma is difficult to cure or may recur, because this tumor can affect the whole body.
In recent years, a chimeric antibody rituximab directed against CD20has been prepared. This antibody exerts significant antitumor effects on B cell lymphoma, one type of non-Hodgkin's lymphoma, and also has limited adverse effects (Non Patent Document 1). Rituximab alone, however, is low effective for some cancers. Although the combination therapy of rituximab with cyclophosphamide, doxorubicin, vincristine, and prednisolone has been adopted, the development of more effective therapeutic agents has been desired (Non Patent Documents 2 and 3). Accordingly, an antitumor antibody targeting a new antigen has been required. A monoclonal antibody against MHC class II is expected to have anti-malignant lymphoma activity as a clinical antibody recognizing an antigen different from that recognized by rituximab. Unfortunately, an anti-MHC class II antibody, for example, an antibody against HLA-DR, has previously been developed, but has not been used as a therapeutic agent (Patent Document 1).
CITATION LIST
Patent Document


    Patent Document 1: WO2003/033538


Non Patent Document


    Non Patent Document 1: McLaughlin P. et al., J Clin Oncol. (1998), 16, 2825-2833
    Non Patent Document 2: Coiffier B. et al., New England Journal of Medicine (2002), 346, 235-242
    [Non Patent Document 3] Cancer Support, 2005, October issue


SUMMARY OF THE INVENTION
Problems to be Solved by the Invention
An object of the present invention is to provide a novel therapeutic agent specific for a malignant tumor expressing MHC class II, particularly, malignant lymphoma.
Means for Solving the Problems
The present inventors have conducted various studies to develop a pharmaceutical agent specifically acting on a malignant tumor expressing MHC class II, particularly, malignant lymphoma. The present inventors have prepared fusion cells using the antibody-producing cells of a non-human animal immunized with two types of malignant lymphoma, not with one type of malignant lymphoma, and further selected, from among the fusion cells, a clone producing a monoclonal antibody which reacts with malignant lymphoma different from the two types and has cytotoxic activity against the malignant lymphoma. The obtained monoclonal antibody has been found to have cytotoxic activity against many types of malignant lymphoma with weak cytotoxic activity against the other cells and to be useful as a selective therapeutic agent for malignant lymphoma. Also, the present inventors have used malignant lymphoma extracts to find that the obtained monoclonal antibody is specifically bound to an HLA-DRβ chain, one of the molecules constituting MHC class II expressed on malignant lymphoma surface. The present inventors have further identified the sequences of the variable regions of the monoclonal antibody and determined an epitope to which the monoclonal antibody binds. On the basis of these findings, the present invention has been completed.
Specifically, the present invention provides the followings:

    [1] An antibody recognizing a protein constituting MHC class II expressed on a malignant tumor, the antibody comprising at least one selected from light chain CDR1 (amino acid sequence represented by positions 49 to 54 of SEQ ID NO: 54), light chain CDR2 (amino acid sequence represented by positions 69 to 84 of SEQ ID NO: 54), light chain CDR3 (amino acid sequence represented by positions 117 to 128 of SEQ ID NO: 54), heavy chain CDR1 (amino acid sequence represented by positions 46 to 55 of SEQ ID NO: 56), heavy chain CDR2 (amino acid sequence represented by positions 71 to 77 of SEQ ID NO: 56), and heavy chain CDR3 (amino acid sequence represented by positions 100 to 108 of SEQ ID NO: 56).
    [2] The antibody recognizing a protein constituting MHC class II expressed on a malignant tumor according to [1], wherein the antibody has the following light chain (a) or (b):
    (a) a light chain having a light chain variable region comprising an amino acid sequence represented by positions 19 to 143 of SEQ ID NO: 54; or
    (b) a light chain having a light chain variable region comprising an amino acid sequence wherein one or several amino acids are deleted, substituted, and/or added in the amino acid sequence represented by positions 19 to 143 of SEQ ID NO: 54.
    [3] The antibody according to [1] or [2], wherein the antibody has the following heavy chain (c) or (d):
    (c) a heavy chain having a heavy chain variable region comprising an amino acid sequence represented by positions 23 to 132 of SEQ ID NO: 56; or
    (d) a heavy chain having a heavy chain variable region comprising an amino acid sequence wherein one or several amino acids are deleted, substituted, and/or added in the amino acid sequence represented by positions 23 to 132 of SEQ ID NO: 56.
    [4] An antibody recognizing a protein constituting MHC class II expressed on a malignant tumor, the antibody having an antigen recognition site binding to an epitope comprising at least an amino acid sequence CRHNYGVGESFT (SEQ ID NO: 1).
    [5] The antibody according to [4], wherein the antigen recognition site further recognizes at least one selected from an amino acid sequence RNQKGHSGLQPRGFLS (SEQ ID NO:28), an amino acid sequence FFNGTERVRLLERHF (SEQ ID NO:8), and an amino acid sequence RHNYGAVESFTVQRR (SEQ ID NO: 15).
    [6] The antibody according to any one of [1] to [5], wherein the antibody has specific cytotoxic activity against the malignant tumor.
    [7] The antibody according to any one of [1] to [6], wherein the malignant tumor is malignant lymphoma.
    [8] The antibody according to any one of [1] to [6], wherein the protein constituting MHC class II is at least one of HLA-DPβ, HLA-DQβ, and HLA-DRβ.
    [9] The antibody according to [8], wherein the protein constituting MHC class II is HLA-DRβ.
    [10] A pharmaceutical composition comprising an antibody according to any one of [1] to [9].
    [11] A therapeutic agent for a malignant tumor expressing MHC class II, comprising an antibody according to any one of [1] to [9] as an active ingredient.
    [12] A reagent for detecting a malignant tumor expressing MHC class II, comprising an antibody according to any one of [1] to [9].
    [13] A method for treating a malignant tumor expressing MHC class II, comprising administering an effective amount of an antibody according to any one of [1] to [9].
    [14] A method for preparing a monoclonal antibody having cytotoxic activity against malignant lymphoma cells, comprising the steps of: alternately immunizing a non-human animal with two types of malignant lymphoma cell lines at least twice or more per cell line; fusing an antibody-producing cell derived from the immunized non-human animal with a myeloma cell to prepare a hybridoma; and culturing the obtained hybridoma.
    [15] The method for preparing a monoclonal antibody having cytotoxic activity against malignant lymphoma cells according to [14], wherein the monoclonal antibody produced from the hybridoma binds to a malignant lymphoma cell line different from the two types of malignant lymphoma cell lines.
    [16] The method for preparing a monoclonal antibody having cytotoxic activity against malignant lymphoma cells according to [15], wherein the two types of malignant lymphoma cell lines used in immunization and the malignant lymphoma cell line different from the two types of malignant lymphoma cell lines have the same HLA.
    [17] The method for preparing a monoclonal antibody having cytotoxic activity against malignant lymphoma cells according to any one of [14] to [16], wherein the two types of malignant lymphoma cell lines used in immunization are L428 and KMH-2.
    [18] The method for preparing a monoclonal antibody having cytotoxic activity against malignant lymphoma cells according to [15] or [16], wherein the malignant lymphoma cell line different from the two types of malignant lymphoma cell lines is L540.
    [19] A hybridoma deposited under deposition No. FERM BP-11418.
    [20] An antibody produced by a hybridoma according to [19].


Effects of the Invention
The antibody of the present invention specifically recognizes MHC class II expressed on malignant lymphoma and has potent cytotoxic activity against the malignant lymphoma. Thus, the antibody of the present invention is useful as a selective therapeutic agent for a malignant tumor expressing MHC class II, particularly, malignant lymphoma. Moreover, an antibody recognizing a malignant lymphoma-specific antigen can be prepared efficiently using the method of the present invention.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 is a diagram showing the effects of the monoclonal antibody of the present invention on malignant lymphoma (5 minutes later).
FIG. 2 is a diagram showing the effects of the monoclonal antibody of the present invention on malignant lymphoma (15 minutes later).
FIG. 3 is a diagram showing the effects of the monoclonal antibody of the present invention on malignant lymphoma (30 minutes later).
FIG. 4 is a diagram showing the effects of the monoclonal antibody of the present invention on malignant lymphoma (60 minutes later).
FIG. 5 shows Western blot results of the monoclonal antibody of the present invention.
FIG. 6 shows results of analyzing the ability of the antibody of the present invention to stain each lymphoma cell (expression level of a cell surface antigen recognized by the antibody of the present invention) to which the antibody of the present invention was confirmed to be cytotoxic, and the cytotoxicity sensitivity of the cell by flow cytometry.
FIG. 7 shows results of analyzing the ability of the antibody of the present invention to stain each lymphoma cell (expression level of a cell surface antigen recognized by the antibody of the present invention) to which the antibody of the present invention was confirmed to be cytotoxic, and the cytotoxicity sensitivity of the cell by flow cytometry.
FIG. 8 shows results of analyzing the effects of the antibody of the present invention on human peripheral blood by flow cytometry.
FIG. 9 shows the reactivity of the antibody of the present invention with TRAIL death receptors DR4 and DR5.
FIG. 10 shows results of analyzing the binding affinity of the monoclonal antibody of the present invention for L428, HANKS, and TL-1 by flow cytometry.
FIG. 11 is a diagram showing the reactivity of the monoclonal antibody of the present invention with degradation products of L428, HANKS, and TL-1.
FIG. 12 shows results of PMF analysis on the L428 cell-derived elution fractions of the monoclonal antibody of the present invention.
FIG. 13 is a diagram showing the reactivity of the monoclonal antibody of the present invention with degradation products of L428, HANKS, and TL-1.
FIG. 14 shows the binding affinities of the monoclonal antibody of the present invention and a commercially available anti-HLA-DR antibody for L428 cells.
FIG. 15 shows a gene (SEQ ID NO:55)encoding the heavy chain variable region (SEQ ID NO:56)of the monoclonal antibody of the present invention.
FIG. 16 shows a gene (SEQ ID NO:53)encoding the light chain variable region (SEQ ID NO:54) of the monoclonal antibody of the present invention.



MODES FOR CARRYING OUT THE INVENTION
In the present specification, amino acids, peptides, and proteins are indicated by abbreviations adopted by the IUPAC-IUB Commission on Biochemical Nomenclature (CBN), as shown below. Also, the sequence of amino acid residues of each peptide or protein is described from the N terminus on the left to the C terminus on the right, unless otherwise specified.

    Ala or A: alanine
    Val or V: valine
    Leu or L: leucine
    Ile or I: isoleucine
    Pro or P: proline
    Phe or F: phenylalanine
    Trp or W: tryptophan
    Met or M: methionine
    Gly or G: glycine
    Ser or S: serine
    Thr or T: threonine
    Cys or C: cysteine
    Gln or Q: glutamine
    Asn or N: asparagine
    Tyr or Y: tyrosine
    Lys or K: lysine
    Arg or R: arginine
    His or H: histidine
    Asp or D: aspartic acid
    Glu or E: glutamic acid


The present invention provides an antibody which specifically recognizes MHC class II expressed on malignant lymphoma and has potent cytotoxic activity against the malignant lymphoma. The present invention also provides a method for efficiently preparing an antibody recognizing a malignant lymphoma-specific antigen.
Anti-MHC Class II Antibody
The major histocompatibility complex (MHC) is a transmembrane glycoprotein molecule found on cell surface and plays a role in presenting various protein fragments (peptides) from within the cell onto its surface. The MHC molecules are classified into two classes: class I and class II. MHC class I presents an endogenous antigen from within the cell, while MHC class II binds to and presents peptides resulting from the endocytic uptake and subsequent degradation of an exogenous antigen. Of these molecules, MHC class II is expressed on, for example, antigen-presenting cells such as macrophages, dendritic cells, activated T cells, and B cells. The human MHC class II includes three types: HLA-DR, HLA-DQ, and HLA-DP. These molecules each function as a heterodimer of two protein subunits of α and β chains.
The antibody of the present invention is not particularly limited as long as the antibody recognizes a protein constituting MHC class II expressed on a malignant tumor and has cytotoxic activity against the malignant tumor. The antibody of the present invention may be a monoclonal antibody or a polyclonal antibody. The antibody of the present invention also includes, but not limited to: natural antibodies; chimeric antibodies, humanized antibodies, and single-chain antibodies which can be produced using gene recombination techniques; human antibodies which can be produced using human antibody-producing transgenic animals or the like; antibody fragments prepared with Fab expression libraries; and fragments thereof having antigen binding affinity.
The antibody of the present invention has the ability to bind to at least a sequence CRHNYGVGESFT (SEQ ID NO: 1) in HLA-DR52 and is considered to recognize this region.
In addition, the antibody of the present invention has the ability to bind to at least one selected from an amino acid sequence RNQKGHSGLQPRGFLS (SEQ ID NO: 28), an amino acid sequence FFNGTERVRLLERHF (SEQ ID NO: 8), and an amino acid sequence RHNYGAVESFTVQRR (SEQ ID NO: 15).
Alternatively, the antibody of the present invention is not particularly limited as long as the antibody recognizes HLA-DR, HLA-DP, or HLA-DQ expressed on a malignant tumor and has cytotoxic activity against the malignant tumor. The antibody of the present invention may be, for example, a monoclonal antibody recognizing HLA-DR expressed on malignant lymphoma, the monoclonal antibody comprising at least one complementarity determining region (CDR) selected from light chain CDR1 (amino acid sequence represented by positions 49 to 54 of SEQ ID NO: 54), light chain CDR2 (amino acid sequence represented by positions 69 to 84 of SEQ ID NO: 54), light chain CDR3 (amino acid sequence represented by positions 117 to 128 of SEQ ID NO: 54), heavy chain CDR1 (amino acid sequence represented by positions 46 to 55 of SEQ ID NO: 56), heavy chain CDR2 (amino acid sequence represented by positions 71 to 77 of SEQ ID NO: 56), and heavy chain CDR3 (amino acid sequence represented by positions 100 to 108 of SEQ ID NO: 56). Also, the antibody of the present invention may be an antibody recognizing MHC class II expressed on a malignant tumor and having cytotoxic activity against the malignant tumor, the antibody comprising a light chain variable region comprising an amino acid sequence represented by positions 19 to 143 of SEQ ID NO: 54 and/or a heavy chain variable region comprising an amino acid sequence represented by positions 23 to 132 of SEQ ID NO: 56. In this context, the cytotoxic activity includes complement-dependent cytotoxicity (CDC) and antibody-dependent cell-mediated cytotoxicity (ADCC).
Alternatively, the antibody of the present invention may be an antibody recognizing MHC class II expressed on a malignant tumor, the antibody comprising a light chain variable region comprising an amino acid sequence represented by positions 19 to 143 of SEQ ID NO: 54 and/or a heavy chain variable region comprising an amino acid sequence represented by positions 23 to 132 of SEQ ID NO: 56, or the antibody comprising a heavy chain variable region comprising an amino acid sequence wherein one or several amino acids are deleted, substituted, and/or added in the defined amino acid sequence and/or a light chain variable region comprising an amino acid sequence wherein one or several amino acids are deleted, substituted, and/or added in the defined amino acid sequence, as long as the antibody recognizes MHC class II expressed on a malignant tumor and has cytotoxic activity against the malignant tumor. In this context, the “amino acid sequence wherein one or several amino acids are deleted, substituted, and/or added in the defined amino acid sequence” means an amino acid sequence modified by a well known method such as site-directed mutagenesis or by the naturally occurring substitution or the like of one or several amino acids. The number of modified amino acids is preferably 1 to 50, more preferably 1 to 30, even more preferably 1 to 10, even more preferably 1 to 5, even more preferably 1 or 2. Alternatively, the antibody of the present invention may be an antibody having cytotoxic activity against a malignant tumor, the antibody comprising a heavy chain variable region or a light chain variable region comprising an amino acid sequence having at least 70%, preferably 80%, more preferably 90%, particularly preferably 95% sequence identity to the defined amino acid sequence.
Furthermore, the antibody of the present invention may be a humanized antibody comprising the heavy and light chain variable regions of a non-human mammal antibody, for example, a mouse antibody, and the heavy and light chain constant regions of a human antibody. Such an antibody can be obtained by: linking a mouse antibody variable region-encoding DNA to a human antibody constant region-encoding DNA; incorporating the resulting product into an expression vector; and transforming a host with the expression vector to produce the antibody of interest. This humanized antibody, also called a reshaped human antibody, contains non-human mammal (e.g., mouse) antibody CDRs grafted into human antibody CDRs. This grafting can be performed by a generally known gene recombination approach. Specifically, a DNA sequence encoding mouse antibody CDRs linked to human antibody framework regions (FRs) is designed and then synthesized by PCR using several oligonucleotides prepared to have terminal overlapping sites. The obtained DNA is linked to a human antibody constant region-encoding DNA and subsequently incorporated into an expression vector. A host is transformed with this expression vector to produce the antibody of interest (see European Patent Application Publication No. EP239400 and International Publication No. WO96/02576). The human antibody FRs to be linked via CDRs are selected such that the complementarity determining regions form favorable antigen-binding sites. If necessary, amino acid(s) in the framework regions of the antibody variable region may be substituted such that the complementarity determining regions of the reshaped human antibody form appropriate antigen-binding sites (Sato, K. et al., Cancer Res, 1993, 53, 851-856).
In addition, the human antibody can also be obtained by a known method. For example, human lymphocytes are sensitized in vitro with the desired antigen or cells expressing the desired antigen. The sensitized lymphocytes are fused with human myeloma cells, for example, U266. The desired human antibody having binding activity against the antigen can be obtained from the fusion cells (see JP-B-1-59878). Alternatively, the desired human antibody may be obtained by immunizing transgenic animals having all repertoires of human antibody genes with the desired antigen (see WO93/12227, WO92/03918, WO94/02602, WO94/25585, WO96/34096, and WO96/33735). In addition, the panning technique of obtaining human antibodies using human antibody libraries is also known. For example, human antibody variable regions are expressed as single-chain antibodies (scFvs) on phage surface by a phage display method. As a result, a phage binding to the antigen can be selected. The gene of the selected phage can be analyzed to determine a DNA sequence encoding the variable region of the human antibody binding to the antigen. On the basis of the determined DNA sequence of scFv binding to the antigen, an appropriate expression vector containing the sequence can be prepared to obtain the human antibody of interest. These methods have already been well known and can be performed with reference to WO92/01047, WO92/20791, WO93/06213, WO93/11236, WO93/19172, WO95/01438, and WO95/15388.
The class of the antibody is not particularly limited. The antibody of the present invention encompasses antibodies having any isotype such as IgG, IgM, IgA, IgD, or IgE. In consideration of easy purification, etc., IgG is preferred, with IgG1a more preferred.
Examples of functional fragments include small antibodies such as antibody fragments, and modified antibodies. Specific examples of the antibody fragments include Fab, Fab′, F(ab′)2, Fv, and Diabody. Such antibody fragments may be obtained by constructing genes encoding these antibody fragments, introducing the genes into expression vectors, and then allowing the genes to be expressed in appropriate host cells (see e.g., Co, M. S. et al., J. Immunol. (1994) 152, 2968-2976; Better, M. and Horwitz, A. H., Methods Enzymol. (1989) 178, 476-496; Pluckthun, A. and Skerra, A., Methods Enzymol. (1989) 178, 497-515; Lamoyi, E., Methods Enzymol. (1986) 121, 652-663; Rousseaux, J. et al., Methods Enzymol. (1986) 121, 663-669; and Bird, R. E. and Walker, B. W., Trends Biotechnol. (1991) 9, 132-137).
Pharmaceutical Composition
The pharmaceutical composition, such as a therapeutic agent for a malignant tumor expressing MHC class II, of the present invention can be formulated, for example, by mixing, dissolving, emulsifying, encapsulating, or freeze-drying the antibody of the present invention, together with a pharmaceutically acceptable carrier well known in the technical field.
A disease to be treated is not particularly limited as long as the disease is a malignant tumor expressing MHC class II. Examples thereof include malignant lymphoma. Examples of the malignant lymphoma include, but not limited to, leukemia (including chronic lymphocytic leukemia and acute lymphocytic leukemia) and lymphoma (including non-Hodgkin's lymphoma, Hodgkin's lymphoma, T cell lymphoma, B cell lymphoma, Burkitt lymphoma, malignant lymphoma, diffuse lymphoma, and follicular lymphoma). The tumor to which the antibody of the present invention is applied is not limited to one type and may be plural types of tumors occurring in combination.
Preferable preparations for oral administration are, for example, liquid formulations comprising an effective amount of the antibody of the present invention dissolved in a diluent such as water or saline; capsules, granules, powders, or tablets comprising an effective amount of the antibody of the present invention in a solid or granule form; suspensions comprising an effective amount of the antibody of the present invention suspended in an appropriate dispersion medium; and emulsions comprising a dispersed and emulsified solution containing an effective amount of the antibody of the present invention in an appropriate dispersion medium.
For parenteral administration, the antibody of the present invention can be prepared, together with a pharmaceutically acceptable solvent, excipient, binder, stabilizer, dispersant, and the like, into dosage forms such as injectable solutions, suspensions, emulsions, creams, ointments, inhalants, or suppositories. For formulation for injection, the antibody of the present invention can be dissolved in a physiologically compatible buffer solution such as an aqueous solution, preferably, a Hank's solution, a Ringer's solution, or a physiological saline buffer solution. In addition, the pharmaceutical agent of the present invention can assume a form such as a suspension, a solution, or an emulsion in an oily or aqueous vehicle. Alternatively, the antibody of the present invention may be produced in a powder form and prepared, before use, into an aqueous solution or a suspension using sterilized water or the like. For administration by inhalation, the antibody of the present invention can be pulverized and prepared as a powder mixture with an appropriate base such as lactose or starch. In order to produce suppository formulation, the antibody of the present invention can be mixed with a common suppository base such as cacao butter. The therapeutic agent of the present invention may be further encapsulated in a polymer matrix or the like and formulated as a sustained-release preparation.
Alternatively, the antibody of the present invention may be conjugated with, for example, a radionuclide such as iodine, yttrium, indium, or technetium [J. W. Goding, Monoclonal Antibodies: principles and practice., 1993 Academic Press], a bacterial toxin such as pseudomonas toxin, diphtheria toxin, or ricin, a chemotherapeutic such as methotrexate, mitomycin, or calicheamicin [D. J. King, Applications and Engineering of Monoclonal Antibodies., 1998 T. J. International Ltd.; and M. L. Grossbard., Monoclonal Antibody-Based Therapy of Cancer., 1998 Marcel Dekker Inc.], or a prodrug such as maytansinoid [Chari et al., Cancer Res., 1992 Vol. 52: 127; and Liu et al., Proc. Natl. Acad. Sci. USA, 1996 Vol. 93: 8681] to thereby further potentiate its therapeutic effects on malignant lymphoma.
The dose of the antibody of the present invention differs depending on the symptoms of a patient, an administration route, a body weight, age, etc., and is preferably, for example, 1 μg to 500 mg per day in adult.
Treatment Method
Malignant lymphoma treatable by a biologically active substance can be treated using the pharmaceutical composition of the present invention. Thus, the present invention provides a method for treating malignant lymphoma, comprising administering an effective amount of the antibody of the present invention to a subject in need thereof.
Reagent for Detecting Malignant Tumor Expressing MHC Class II
The present invention provides a reagent for detecting the presence of a malignant tumor expressing MHC class II, the reagent comprising the antibody of the present invention. The antibody of the present invention may be labeled. This detection reagent detects the presence of a malignant tumor expressing MHC class II by detecting antigen-antibody reaction. Thus, the detection reagent of the present invention may further comprise, if desired, various reagents for carrying out antigen-antibody reaction, for example, a secondary antibody, a coloring reagent, a buffer solution, an instruction, and/or an instrument, for use in ELISA, etc.
Method for Preparing Antibody Specifically Recognizing Malignant Lymphoma
The monoclonal antibody of the present invention can be prepared by a method comprising the steps of: alternately immunizing a non-human animal with two types of malignant lymphoma cell lines twice or more per cell line; fusing an antibody-producing cell derived from the immunized non-human animal with a myeloma cell to prepare a hybridoma; and culturing the obtained hybridoma.
The two types of malignant lymphoma cell lines used in immunization (hereinafter, also referred to as immunizing cell lines) can be two cell lines selected from among known established malignant lymphoma cell lines and may be Hodgkin's lymphoma cell lines or non-Hodgkin's lymphoma cell lines. Examples thereof include two cell lines selected from KMH-2, L428, L540, RAJI, Daudi, KARPAS-299, C1R, and HT. Preferably, two cell lines having the same HLA are selected from them. For example, KMH-2, L428, and L540 all have HLA-A3. Thus, two types are preferably selected from these cell lines and used. Particularly preferably, KMH-2 and L428 are used.
Each non-human animal is alternately immunized with these two types of immunizing cell lines twice or more per cell line. Specifically, the non-human animal is alternately immunized with these two types of immunizing cell lines twice or more per cell line, i.e., a total of four times or more. The number of immunization is more preferably 2 to 5 per cell line, even more preferably 3 or more per cell line, particularly preferably 3 times per cell line. The single dose of each immunizing cell line used in immunization is 2×107 to 108 cells, particularly preferably 3×107 cells.
Examples of immunization means include subcutaneous injection, intraperitoneal injection, intravenous injection, intradermal injection, intramuscular injection, and injection into footpads. Intraperitoneal injection is preferred. The interval between immunizations is preferably, for example, 2 weeks to 4 weeks. Then, an antibody titer against the antigen is determined in the sera of the immunized animals. An animal confirmed to have a sufficiently high antibody titer is used as a source of antibody-producing cells. Antibody-producing cells derived from the animal 3 to 5 days after the final immunization are preferably used.
Examples of the non-human animal used in immunization include mice, rats, guinea pigs, hamsters, rabbits, and pigs. Mice are particularly preferred. Examples of the antibody-producing cell include spleen, lymph node, and bone marrow cells. Spleen cells are preferred.
Examples of the myeloma cell used in cell fusion include cells derived from animals such as mice, rats, guinea pigs, hamsters, and rabbits. A mouse-derived established myeloma cell line is preferred. Specific examples thereof include P3×63Ag8U.1 (P3-U1), P3/NSI/1-Ag4-1 (NS-1), Sp2/o-Ag14 (SP-2), P3×63Ag8.653 (653), and P3×63Ag8 (×63).
The cell fusion between the antibody-producing cells and the myeloma cells is performed, for example, by mixing the antibody-producing cells and the myeloma cells at a ratio of 0.5:1 to 2:1 in terms of the number of cells and adding 50 w/v % polyethylene glycol (molecular weight: 1000 to 4000) to the cell mixture. Then, fusion cells are selected by screening using a HAT medium.
A hybridoma which reacts with a malignant lymphoma cell line (hereinafter, also referred to as a selection cell line) different from the two types of immunizing cell lines and produces a monoclonal antibody having cytotoxic activity against the malignant lymphoma cell line is selected from the obtained hybridomas. The selection cell line can be any cell line different from the two types of immunizing cell lines and can be selected from the malignant lymphoma cell lines mentioned above. The selection cell line may be a Hodgkin's lymphoma cell line or a non-Hodgkin's lymphoma cell line. The selection cell line is more preferably a cell line having the same HLA as the cell lines for immunization and is more preferably a cell line having HLA-A3. Particularly, L540 is preferred.
The hybridoma of the present invention is selected, for example, by adding the supernatants of the hybridomas to be tested to the culture solution of the selection cell line and selecting a clone producing a monoclonal antibody toxic to the selection cell line by a dye exclusion test using a dye such as trypan blue.
Examples of the hybridoma of the present invention thus obtained include 4713 mAb (FERM BP-11418). 4713 mAb was deposited on Sep. 28, 2010 with International Patent Organism Depositary, National Institute of Advanced Industrial Science and Technology (Tsukuba Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566 Japan).
The hybridoma of the present invention can be cultured to thereby obtain a monoclonal antibody useful as a therapeutic agent for malignant lymphoma. Large-scale culture is performed by rotational or spinner culture using large-scale culture vessels or by culture using a hollow fiber system. A supernatant from this large-scale culture can be purified by a method well known by those skilled in the art, such as gel filtration, to obtain the monoclonal antibody of the present invention. Alternatively, the hybridoma may be grown in the peritoneal cavity of a mouse of the same line to thereby obtain an ascitic fluid containing the monoclonal antibody of the present invention in large amounts. Also, the obtained monoclonal antibody can be prepared into a chimeric antibody or a humanized antibody by the methods mentioned above.
EXAMPLES
Example 1
(1) Immunization Method
An eight-week-old female BALB/c mouse was alternately immunized with two types of Hodgkin's lymphoma cell lines (3×107 cells each) three times per cell line (a total of six times) at 2-week intervals. Cultured cells of each cell line were washed twice with saline, then resuspended in 200 μL of saline, and intraperitoneally injected to the mouse without use of adjuvants.
These two types of Hodgkin's lymphoma cell lines were L428 and KM-H2 selected on the ground that they expressed HLA-A3.
(2) Cell Fusion
3 days after the final immunization, 108 spleen cells of the immunized mouse were fused with 108 P3U1 myeloma cells using PEG4000. This cell mixture was seeded in fifty 96-well flat-bottomed plates.
(3) Screening Method
HLA-A3-expressing Hodgkin's lymphoma L540 cells were added at a concentration of 2×106 cells/mL, together with 50 μL, of RPMI (containing 2% FCS), to a Fisher tube or another 96-well flat-bottomed plate, to which 50 μL of the cell culture supernatant from a positive well was then added, followed by incubation at 37° C. for 1 hour.
Trypan blue was added thereto to examine a clone producing an antibody killing the target L540 cells by a dye exclusion test (according to J. Exp. Med. Vol. 181 June 1995 p. 2008).
A hybridoma culture supernatant obtained by two limiting dilutions of the clone (designated as 4713 mAb) thus obtained or an ascitic fluid produced by a nude mouse was used in the subsequent experiments.
The subclass of the antibody was mouse IgG1.
Example 2
(Method)
The monoclonal antibody (4713 mAb) of the present invention was examined for its cytotoxic activity against the Hodgkin's lymphoma cells L428 and KM-H2 used in mouse immunization in the same way as in the examination of cytotoxic activity against L540. 4713 mAb was added at a concentration of 3 μg/mL to 2×106 cells/mL of L428 cells or KM-H2 cells. Change in the morphology of the cells was microscopically observed. The lethality of the KM-H2 cells was only 10% or less by 1-hour incubation. However, cell aggregation, which is often observed at a stage prior to cell death, was observed. Thus, cytotoxic activity brought about by 12-hour incubation was further examined in the same way as above.
(Results)
The results are shown in FIGS. 1 to 4.
As is evident from FIGS. 1 to 4, the cells aggregated in several minutes (FIG. 1). On 15 minutes, some cells in the cell aggregates were stained blue by the addition of trypan blue, showing that cells killed by the antibody started to appear (FIG. 2). The incubation with the antibody for a time exceeding 30 minutes was confirmed to kill more than 30% cells (FIG. 3). The incubation with the antibody for 60 minutes lysed most of the cells through cell death. Remaining aggregates composed mainly of dead cells may also be observed (FIG. 4).
Example 3
Western blot results of the monoclonal antibody (4713 mAb) of the present invention are shown in FIG. 5.
Example 4
4713 mAb was examined for its cytotoxic activity against Burkitt lymphoma cells as lymphoma cells other than Hodgkin's lymphoma cells in the same way as in the Examples above. As a result, slightly more than 50% Burkitt lymphoma cells examined in the same way as the Hodgkin's lymphoma cells were also killed in 1 hour.
Example 5
4713 mAb was also examined for its cytotoxic activity against the other lymphoma cells in the same way as above. The results are shown in Table 1.










TABLE 1





Cell line
cell type
cytotoxicity
comment







L428
Hodgkin lymphoma
92%/h
CD20(+)HLA-





DR(+)


L540
Hodgkin lymphoma
40%/h
CD15(+)CD25(+)


KM-H2
Hodgkin lymphoma
32%/12 h
HLA-DR(+)


RAJI
Burkitt lymphoma
51%/h
CD25(+)HLA-





DR(+)


Daudi
Burkitt lymphoma
56%/h
MHC class I defect


KARPAS-299
T cell lymphoma
34%/12 h
CD3(−)CD4(+)


C1R
B cell lymphoma
65%/h
MHC class I defect


HT
B lymphoblast
68%/h
diffuse mixed





lymphoma









Normal human peripheral lymphocyte
 0%









As is evident from Table 1, 4713 mAb is toxic to many types of malignant lymphoma cells, but not toxic to normal lymphocytes.
Example 6
The antibody of the present invention was analyzed for its ability to stain each lymphoma cell to which the antibody was confirmed to be cytotoxic and for the cytotoxicity sensitivity of the cell by flow cytometry.
The antibody of the present invention was added to a cell suspension. 30 minutes later, the cells were washed and then reacted with fluorescein isothiocyanate (FITC)-conjugated rat anti-mouse immunoglobulin as a secondary antibody. The ability to stain the cells is shown in a histogram with a green line (FIGS. 6 and 7). Cells other than a chronic myelocytic leukemia-derived cell line K562 showed a great shift to the right of a base line indicated by black solid line, demonstrating that the cells were well stained. This means that the antibody recognized lymphoma cell surface. Also, the staining of these cells with propidium iodide (PI), which is incorporated only into dead cells, is shown in a histogram with a red line.
As is evident from the histograms, the incubation for mere 30 minutes already killed a considerable number of cells. Even cells, such as K562, showing a small shift of the green line, i.e., having a small number of surface antigens (the antibody is hardly bound to such cells), were confirmed to be dead, although the dead cells were few in number.
Example 7
Peripheral blood was collected from a healthy person. Red blood cells were removed by lysis with tris-buffered ammonium chloride. Then, the resulting blood was incubated, either directly or after 24-hour stimulation with Con A, with the antibody of the present invention for 1 hour. After subsequent staining with an FITC-labeled anti-mouse immunoglobulin antibody as a secondary antibody, the blood was analyzed by flow cytometry. In this test, the number of dead cells was also analyzed by the addition of PI.
(Results)
As shown in FIG. 8, the monoclonal antibody of the present invention partially stained the peripheral blood of the healthy person, but did not kill the peripheral blood cells of the healthy person for at least 60 minutes. The same results were obtained from the case of 24-hour activation with concanavalin A (Con A).
Example 8
Reactivity of Antibody of Present Invention with TRAIL death receptors DR4 and DR5
(Method)
Hamster-derived BHK cells transfected with the DR4 receptor or DR5 receptor gene were incubated with the antibody of the present invention for 1 hour and analyzed by flow cytometry in the same way as in Example 6.
(Results)
In order to confirm whether the antibody of the present invention targets a TNF-related apoptosis inducing ligand (TRAIL) death receptor DR4 or DR5 known as a death receptor (cell death-inducing antigen), the antibody of the present invention was examined for its ability to stain hamster-derived BHK cells transfected with the DR4 receptor or DR5 receptor gene in the same way as above. As a result, the cells were stained by a known antibody against DR4 receptor or DR5 receptor (red line), but not stained by the antibody of the present invention (FIG. 9). These results demonstrated that the present antibody does not target a TRAIL death receptor such as DR4 or DR5.
Example 9
Binding of 4713 mAb with Malignant Lymphoma Cell Line
L428, HANK1, and TL1 cells were analyzed using a flow cytometer to confirm the binding of 4713 mAb thereto (FIG. 10).
Example 10
Identification of Target Antigen of 4713 mAb
According to the protocol of GE Healthcare Japan Corp., 4713 mAb (5 mg) was conjugated to HiTrap NHS-Activated HP (capacity: 1 mL, GE Healthcare #17-0716-01) to prepare a 4713 mAb column. L428, HANKS, or TL cells (1×108 cells) were suspended in a phosphate buffer solution containing 1% Nonidet P-40 (Wako Pure Chemical Industries, Ltd.) and a protease inhibitor (Roche Diagnostics K.K.). Each cell suspension was incubated at 4° C. for 5 minutes and then centrifuged in a tabletop centrifuge (1500 rpm, 5 min.). A supernatant fraction was recovered and applied to the 4713 mAb column equilibrated with a phosphate buffer solution. After washing with a phosphate buffer solution, fractions were eluted with a 0.1% aqueous glycine-HCl solution (pH 2.7) and neutralized with a 1 M aqueous tris-HCl solution (pH9.0).
The elution fractions were separated by SDS-polyacrylamide gel electrophoresis and stained with Coomassie brilliant blue (FIG. 11). L428 cell-derived elution fractions recovered at a high rate were numbered starting at 1 for the lowest molecular weight in order. Nine bands were analyzed by peptide mass fingerprint (PMF) (FIG. 12). The results are shown in Table 2 (this analysis was carried out by Shimadzu Techno-Research, Inc.). Next, the elution fractions were subjected to SDS-polyacrylamide gel electrophoresis and then analyzed by Western blot using 4713 mAb. As a result, 4713 mAb was confirmed to bind to the HLA-DR β chain corresponding to the band Mat I-2 identified by PMF analysis (FIG. 13).









TABLE 2









Mat I-9: Exportin-5, RANBP21



Mat I-8: TCP-1 subunit 8 (q)



Mat I-7: Tublin b-2C



Mat I-6: Keratin



Mat I-5: actin



Mat I-3: HLA-DR α-chain



Mat I-2: HLA-DR β-chain










Example 11
Analysis of 4713 mAb for its Ability to Bind to Peptide Library of HLA Class II-β Chain
Overlapping peptides consisting of 8 to 12 amino acids shifted by one amino acid were chemically synthesized from their C termini on an array using the amino acid sequence of an HLA-DR52 β chain having the highest homology as a result of analysis using software Mascot (Shimadzu Techno-Research, Inc.) to prepare a peptide microarray (LC Sciences, LLC, Texas, US). First, the array was blocked by immersion overnight at 4° C. in a SuperBlock (pH 7.0) (Pierce Biotechnology Inc.) solution containing 0.05% Tween-20 to prevent nonspecific antibody binding. Next, the array was washed with a phosphate buffer solution (pH 7.0) containing 0.05% Tween-20 and 0.05% Triton X-100 as a washing solution and then incubated at 25° C. for 1 hour in a 5 μg/mL 4713 mAb solution. The array was washed with the washing solution for 20 minutes and then incubated at 25° C. for 1 hour in a 10 ng/mL Cy5-labeled goat anti-mouse IgG antibody solution. Cy5 was assayed at a wavelength of 635 nm using a microarray scanner (PMT 700 V). Since nonspecific binding to a peptide sequence having a C-terminal tryptophan residue was observed, this sequence was omitted and peptide sequences showing specific binding were then analyzed. As a result, a 4713 mAb-specific binding signal was confirmed only in the region of a peptide (CRHNYGVGESFT: SEQ ID NO: 1) consisting of 12 amino acid residues starting at the second N-terminal cysteine residue among four cysteine residues conserved in all HLA class II (DR, DP, and DQ) β chain molecules. A peptide sequence (WNSQKDILEQKRG: SEQ ID NO: 2) of the HLA-DR β-chain to which an antibody described in WO2003/033538 bind is located 6 amino acid residues before the second N-terminal cysteine residue. The binding of 4713 mAb to this region was not seen.
In order to reconfirm the results obtained using the peptide microarray, HLA-DR expressed by L428 cells was analyzed. Results of serological typing demonstrated that L428 cells express only HLA-DR12 (SRL Inc.). Next, overlapping peptides were synthesized from the amino acid sequence of HLA-DR12 to prepare a custom SPOTs nitrocellulose membrane (Sigma-Aldrich Corp.). The membrane was rinsed with methanol for 5 minutes, then washed with a tris-borate buffer solution (TBS), and incubated at room temperature for 2 hours for blocking. Next, the biotinylated 4713 antibody was added thereto at a final concentration of 1 μg/mL and incubated for 3 hours. The membrane was washed and then incubated for 2 hours in a solution of peroxidase (HRP)-labeled streptavidin (manufactured by Dako Japan Inc.) diluted 3000-fold with TBS. After washing, positive spots were detected using ECL Prime Western Blotting Detection kit (manufactured by GE Healthcare Japan Corp.) and a chemiluminescence detector (LAS-4000) (Table 3). As a result, the most strongly reacted peptide was DR12-26, followed by DR12-6 and DR12-13. As a result of peptide microarray analysis, this DR12-13 was an HLA-DR12-derived peptide sequence having the same region as in the only one HLA-DR52 peptide sequence CRHNYGVGESFT to which 4713 mAb had the ability to specifically bind, demonstrating that this ability to bind was reproducible. Although an HLA-DR12-derived peptide to which the antibody described in WO2003/033538 binds was also arrayed as DR12-28, no binding was seen (Table 3). By contrast, the antibody also exhibited the ability to strongly bind to the DR12-26 peptide located in the intracellular region of HLA-DR and the DR12-6 peptide located in another extracellular region, suggesting the possibility that the 4713 antibody was also capable of binding to a peptide other than the epitope sequence.









TABLE 3







Binding



HLA-DR12 Peptide
affinity







DR12-1
MVCLKLPGGSSLAAL (SEQ ID NO 3)
−


 


DR12-2
SSLAALTVTLMVLSS (SEQ ID NO 4)
+


 


DR12-3
LMVLSSRLAFAGDTR (SEQ ID NO 5)
+


 


DR12-4
FAGDTRPRFLEYSTG (SEQ ID NO 6)
+


 


DR12-5
LEYSTGECYFFNGTE (SEQ ID NO 7)
−


 


DR12-6
FFNGTERVRLLERHF (SEQ ID NO 8)
++


 


DR12-7
LLERHFHNQEELLRF (SEQ ID NO 9)
+


 


DR12-8
EELLRFDSDVGEFRA (SEQ ID NO 10)
−


 


DR12-9
VGEFRAVTELGRPVA (SEQ ID NO 11)
−


 


DR12-10
LGRPVAESWNSQKDI (SEQ ID NO 12)
−


 


DR12-11
NSQKDILEDRRAAVD (SEQ ID NO 13)
−


 


DR12-12
RRAAVDTYCRHNYGA (SEQ ID NO 14)
−


 


DR12-13
RHNYGAVESFTVQRR (SEQ ID NO 15)
++


 


DR12-14
FTVQRRVHPKVTVYP (SEQ ID NO 16)
+


 


DR12-15
KVTVYPSKTQPLQHH (SEQ ID NO 17)
+


 


DR12-16
QPLQHHNLLVCSVSG (SEQ ID NO 18)
−


 


DR12-17
VCSVSGFYPGSIEVR (SEQ ID NO 19)
+


 


DR12-18
GSIEVRWFRNGQEEK (SEQ ID NO 20)
−


 


DR12-19
NGQEEKTGVVSTGLI (SEQ ID NO 21)
−


 


DR12-20
VSTGLIQNGDWTFQT (SEQ ID NO 22)
−


 


DR12-21
DWTFQTLVMLETVPR (SEQ ID NO 23)
−


 


DR12-22
LETVPRSGEVYTCQV (SEQ ID NO 24)
−


 


DR12-23
VYTCQVEHPSVTSPL (SEQ ID NO 25)
−


 


DR12-24
SVTSPLTVEWRARSE (SEQ ID NO 26)
−


 


DR12-25
WRARSESAQSK (SEQ ID NO 27)
+


 


DR12-26
RNQKGHSGLQPRGFLS (SEQ ID NO 28)
+++


 


DR12-27
WNSQKDFLEDRRA (SEQ ID NO 29)
−


 


DR12-28
WNSQKDILEDRRA (SEQ ID NO 30)
−









Example 12
Analysis of 4713 mAb for its Ability to Bind to HLA-DR Epitope Peptide Library
A peptide library of epitope sequences within the HLA-DR β chain to which the antibody described in WO2003/033538 binds was prepared on a custom SPOTs nitrocellulose membrane in the same way as in Example 11. The 4713 antibody was analyzed for its ability to bind thereto by Western blotting. As a result, the antibody was confirmed to have the ability to bind to peptides #25, #34, and #38 (Table 4). In addition, the ability of the antibody to bind to three peptides DR12-6, DR-12-13, and DR-12-26 confirmed in Example 11 was also confirmed to be reproducible. These results suggest the ability of the 4713 antibody to bind to a peptide sequence other than the epitope sequence. However, no homology was observed among the primary sequences of the bound peptide groups, indicating that the antibody may recognize the three-dimensional structures of the peptides.











TABLE 4









Bind-






ing






affin-




Peptide

ity



















1
#24
WNSQKDFLEDRRA (SEQ ID NO 31)
13



 


2
#25
WNSQKDFLERRRA (SEQ ID NO 32)
13
++


 


3
#26
WNSQKDFLEDERA (SEQ ID NO 33)
13



 


4
#27
WNSQKDFLEQARA (SEQ ID NO 34)
13



 


5
#28
WNSQKDILEDERA (SEQ ID NO 35)
13



 


6
#29
WNSQKDILEQKRG (SEQ ID NO 36)
13



 


7
#30
WNSQKDILEDRRA (SEQ ID NO 37)
13



 


8
#31
WNSQKDILEDRRG (SEQ ID NO 38)
13



 


9
#32
WNSQKDILEDKRA (SEQ ID NO 39)
13



 


10
#33
WNSQKDILEQARA (SEQ ID NO 40)
13



 


11
#34
WNSQKDLLEQRRA (SEQ ID NO 41)
13
+


 


12
#35
WNSQKDLLEQARA (SEQ ID NO 42)
13



 


13
#36
WNSQKDLLEQKRG (SEQ ID NO 43)
13



 


14
#37
WNSQKDLLEDRRA (SEQ ID NO 44)
13



 


15
#38
WNSQKDLLERRRA (SEQ ID NO 45)
13
+


 


16
#39
WNSQKDLLEDERA (SEQ ID NO 46)
13



 


17
#40
WNSQKDALEQRRA (SEQ ID NO 47)
13



 


18
#41
WNSQKDLLEARRA (SEQ ID NO 48)
13



 


19
#42
WNSQKDLLEQARA (SEQ ID NO 49)
13



 


20
#43
WNSQKDLLEQRRG (SEQ ID NO 50)
13



 


21
#83
SQKDILEQARAV (SEQ ID NO 51)
12



 


22
#84
KDILEQARAVDT (SEQ ID NO 52)
12



 


23
DR12-
RNQKGHSGLQPRGFLS
16
++



26
(SEQ ID NO 28)




 


24
DR12-
FFNGTERVRLLERHF (SEQ ID NO 8)
15
++



6





 


25
DR12-
RHNYGAVESFTVQRR
15
+



13
(SEQ ID NO 15)









Example 13
Comparison of Abilities of 4713 mAb and Anti-HLA-DR Antibody to Bind to L428 Cells and to Induce Cell Death
The abilities to bind to L428 cells and to induce cell death were compared between 4713 mAb and a commercially available antibody (clone name: LN3) known to bind to HLA-DR, as well as 4713 mAb. The ability of each antibody to bind to L428 cells was analyzed by incubation with each of serially diluted antibody solutions using a flow cytometer. Both the antibodies exhibited the concentration-dependent ability to bind. 4713 mAb, however, was confirmed to exhibit the ability to bind at about 10 times lower concentration than LN3 (FIG. 14 and Table 5). For cell death induction, the uptake of propidium iodide (PI) was analyzed using a flow cytometer. As a result, the ability of 4713 mAb to induce cell death correlated with the ability to bind to cell surface and was active at about 10 times lower concentration than LN3 (Table 5).







TABLE 5







Concentration-dependent ability of 4713 antibody to bind


to L428 cells and its ability to induce cell death










4713mAb
LN3











Antibody
Ability to bind
Cell
Ability to bind



concentration
(average
death
(average
Cell death


(ng/mL)
strength)
(%)
strength)
(%)














250.0
6993
86 (%)
3274
77 (%)


125.0
4118
85 (%)
2419
72 (%)


62.5
3366
77 (%)
1613
68 (%)


31.2
2629
72 (%)
928
40 (%)


15.6
2076
68 (%)
694
35 (%)


7.8
1434
66 (%)
430
14 (%)


3.9
942
35 (%)
339
 5 (%)


1.95
645
32 (%)
230
 2 (%)


0.98
497
16 (%)
181
 1 (%)


0.0
129
 1 (%)
129
 1 (%)









Example 14
Cloning of Antibody Gene from 4713 mAb-Producing Hybridoma
1. Mouse Antibody (IgG) Sequence-Specific RT Reaction
Total RNA was prepared from the 4713 mAb-producing hybridoma (deposition No. FERM BP-11418) according to a standard method and used as a template to synthesize cDNA using a mouse antibody (IgG) heavy chain-specific primer (H-RT1: TCCAKAGTTCCA). Similarly, cDNA was synthesized using a light chain-specific primer (L-RT1: GCTGTCCTGATC). RT reaction was performed according to the instruction of SMARTerTM RACE cDNA Amplification Kit (Clontech Cat. No. 634924) under the following conditions:

    (1) 0.5 μg of total RNA, 1 μl of H-RT1 or L-RT1 (12 μM), and dH2O up to 3.75 μl were mixed and reacted at 70° C. for 3 minutes and at 42° C. for 2 minutes.
    (2) 1 μl of SMARTer II A Oligonucleotide (12 μM), 1 μl of DTT (20 mM), 1 μl of dNTP Mix (10 mM each), 2 μl of 5× First-Strand Buffer, 0.25 μl of RNase Inhibitor (40 U/μ1), and 1 μl of SMARTScribeTM Reverse Transcriptase (100 U/μl) were added to the reaction solution and reacted at 42° C. for 90 minutes and at 70° C. for 10 minutes.
    (3) The reaction was terminated by the addition of 50 μl of a tricine-EDTA buffer, and the solution was stored at −20° C.


2. Mouse Antibody (IgG) Sequence-Specific RACE PCR Reaction
5′ RACE PCR analysis was conducted using SMARTerTM RACE cDNA Amplification Kit.

    (1) RACE PCR reaction was performed with the cDNA (synthesized with the heavy chain-specific primer) synthesized in the paragraph 1 as a template using the mouse antibody (IgG) heavy chain-specific primer as a reverse primer and Universal primer mix (UPM) included in the kit as a forward primer. Similarly, RACE PCR reaction was performed with the cDNA (synthesized with the light chain-specific primer) as a template using the light chain-specific primer. The PCR enzyme used was PrimeSTAR (Takara Bio Inc.).


PCR reaction was performed according to the protocol included in the kit.

    (2) The successful obtainment of PCR products of expected sizes was confirmed by electrophoresis on an agarose gel. The PCR products were designated as SYN3460H for H-chain RT-PCR and SYN3460L for L-chain RT-PCR, then purified by gel removal, and then used in analysis.


3. Cloning and Sequencing

    (1) The PCR products (SYN3460H and SYN3460L) thus purified by gel removal were each ligated with cloning plasmids pMD20-T (Takara Bio Inc.).
    (2) Transformation was performed according to a standard method to obtain 48 clones per PCR product.
    (3) The insert contained in each clone thus obtained was sequenced according to a standard method. Sequencing reaction was performed using BigDye Terminators v3.1 Cycle Sequencing Kit (Applied Biosystems, Inc.) and ABI3730 Sequencer (Applied Biosystems, Inc.) according to the protocol thereof.
    (4) The results of sequencing 48 clones each for the heavy and light chains and their nucleotide sequences except for the vector region and a low reliable region were obtained.


4. Evaluation of Results
Next, the following analysis was conducted using the nucleotide sequences obtained in the paragraph 3-(4):

    (1) Classification of Obtained Sequences and Obtainment of Consensus Sequences


The nucleotide sequences of the heavy and light chains were classified on the basis of homology. Homology was compared using DNA sequence assembly software SEQUENCHERTM (Gene Codes: Windows (registered trademark) version). As a result, two contigs and three contigs were obtained for the heavy and light chains, respectively (some observed sequences did not constitute such a contig). Consensus sequences were obtained from the obtained contigs.

    (2) Regarding Candidate Sequence of Gene of Interest


The consensus sequences and contig-free sequences were screened for the sequences of possible candidates of the genes of interest. In this context, all of sequences having, without a stop codon, a codon for a methionine residue upstream of an amino acid sequence encoded by the antibody constant region gene were selected.

    (3) Prediction of Amino Acid Sequence


Of the candidate sequences, the respective major contigs of the heavy and light chains were likely to be the sequences of interest on the basis of the number of sequences constituting contigs and the presumable gene lengths of the obtained sequences. Thus, amino acid sequences encoded by the respective consensus sequences of the major contigs were defined as the amino acid sequences of the heavy and light chains.
The gene sequences and amino acid sequences of the 4713 mAb heavy and light chain variable regions obtained by the above method are shown in FIGS. 15 and 16, respectively. The gene sequence and amino acid sequence of the light chain variable region are shown in SEQ ID NOs: 53 and 54, respectively. The gene sequence and amino acid sequence of the heavy chain variable region are shown in SEQ ID NOs: 55 and 56, respectively. According to the numbering of Kabat et al. (Kabat, E. A., et al., Sequences of Proteins of Immunological Interest, 5th ed., 1991, Bethesda: US Dept. of Health and Human Services, PHS, NIH.), positions 1 to 18 in SEQ ID NO: 54 correspond to a leader sequence; positions 49 to 54 correspond to CDR1; positions 69 to 84 correspond to CDR2; and positions 117 to 128 correspond to CDR3. Likewise, positions 1 to 22 in SEQ ID NO: 56 correspond to a leader sequence; positions 46 to 55 correspond to CDR1; positions 71 to 77 correspond to CDR2; and positions 100 to 108 correspond to CDR3.

## Claims

1. An antibody recognizing a MHC class II protein expressed on a malignant tumor, the antibody comprising a light chain CDR1 (amino acid sequence represented by positions from 49 to 54 of SEQ ID NO: 54), a light chain CDR2(amino acid sequence represented by positions from 69 to 84 of SEQ ID NO: 54), a light chain CDR3 (amino acid sequence represented by positions from 117 to 128 of SEQ ID NO: 54), a heavy chain CDR1 (amino acid sequence represented by in positions from 46 to 55 of SEQ ID NO: 56), a heavy chain CDR2 (amino acid sequence represented by positions from 71 to 77 of SEQ ID NO: 56), and a heavy chain CDR3 (amino acid sequence represented by positions from 100 to 108 of SEQ ID NO: 56).

2. The antibody according to claim 1, comprising:
a light chain having a light chain variable region comprising an amino acid sequence in positions from 19 to 143 of SEQ ID NO: 54,
wherein one or several amino acids within the framework region of the amino acid sequence of SEQ ID NO: 54 are optionally deleted, substituted, added, or a combination thereof.

3. The antibody according to claim 1, comprising:
a heavy chain having a heavy chain variable region comprising an amino acid sequence in positions from 23 to 132 of SEQ ID NO: 56
wherein one or several amino acids within the framework region of the amino acid sequence of SEQ ID NO: 56 are optionally deleted, substituted, added, or a combination thereof.

4. The antibody according to claim 1,
wherein the antibody has a specific cytotoxic activity against the malignant tumor.

5. The antibody according to claim 1,
wherein the malignant tumor expressing the MHC class II protein is malignant lymphoma.

6. The antibody according to claim 1,
wherein the MHC class II protein is at least one member selected from the group consisting of HLA-DPβ, HLA-DQβ, and HLA-DRβ.

7. The antibody according to claim 6,
wherein the MHC class II protein is HLA-DRβ.

8. A pharmaceutical composition, comprising:
the antibody according to claim 1.

9. A therapeutic agent, comprising:
the antibody according to claim 1 as an active ingredient,
wherein the therapeutic agent is suitable for the malignant tumor expressing the MHC class II protein.

10. A reagent, comprising:
the antibody according to claim 1,
wherein the reagent is suitable for detecting the malignant tumor expressing the MHC class II protein.

11. A method for treating the malignant tumor expressing the MHC class II protein, comprising:
administering an effective amount of the antibody according to claim 1 to a subject in need thereof.