# Patent

## Title
Plant quality with various promoters

## Abstract

The invention relates to plant transcription factor polypeptides, polynucleotides that encode them, homologs from a variety of plant species, and methods of using the polynucleotides and polypeptides to produce transgenic plants having advantageous properties, including increased soluble solids, lycopene, and improved plant volume or yield, as compared to wild-type or control plants. The invention also pertains to expression systems that may be used to regulate these transcription factor polynucleotides, providing constitutive, transient, inducible and tissue-specific regulation.

## Background
RELATIONSHIP TO COPENDING APPLICATIONS
This application claims the benefit of Application No. 60/961,403, filed Jul. 20, 2007. This application is a continuation-in-part of application Ser. No. 10/286,264, filed Nov. 1, 2002 (pending), which is a divisional of application Ser. No. 09/533,030, filed Mar. 22, 2000 (abandoned), which claims the benefit of Application No. 60/125,814, filed Mar. 23, 1999. This application is a continuation-in-part of application Ser. No. 10/675,852, filed Sep. 30, 2003 (pending). This application is a continuation-in-part of application Ser. No. 11/479,226, filed Jun. 30, 2006 (pending), which is a continuation-in-part of application Ser. No. 09/713,994, filed Nov. 16, 2000 (abandoned), which claims the benefit of Application No. 60/166,228, filed Nov. 17, 1999, which also claims the benefit of Application No. 60/197,899, filed Apr. 17, 2000, which also claims the benefit of Application No. 60/227,439, filed Aug. 22, 2000. This application is a continuation-in-part of application Ser. No. 10/669,824, filed Sep. 23, 2003, which is a continuation-in-part of, 09/823,676, filed Mar. 30, 2001 (issued as U.S. Pat. No. 6,717,034). This application is a continuation-in-part of application Ser. No. 11/725,235, filed Mar. 16, 2007, which is a divisional of application Ser. No. 10/225,068, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,193,129), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, and also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, and also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; application Ser. No. 10/225,068 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). This application is a continuation-in-part of application Ser. No. 11/728,567, filed Mar. 26, 2007, which is a divisional of application Ser. No. 10/225,066, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,238,860), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, and also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, and also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001. Application Ser. No. 10/225,066 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). This application is a continuation-in-part of application Ser. No. 11/375,241, filed Mar. 16, 2006 (pending), which claims the benefit of Application No. 60/713,952, filed Aug. 31, 2005. Application Ser. No. 11/375,241 is also a continuation-in-part of application Ser. No. 10/225,067, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,135,616), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, which also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, and also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001. Application Ser. No. 10/225,067 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). This application is a continuation-in-part of application Ser. No. 11/069,255, filed Feb. 28, 2005 (pending), which is a continuation-in-part of application Ser. No. 10/112,887, filed Mar. 18, 2002 (abandoned). This application is a continuation-in-part of application Ser. No. 10/374,780, filed Feb. 25, 2003 (pending), which is a continuation-in-part of Application No. 09/934,455, filed Aug. 22, 2001 (abandoned), which is a continuation-in-part of application Ser. Nos. 09/713,994, Nov. 16, 2000 (abandoned), which is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), which also claims priority to Application No. 60/227,439, filed Aug. 22, 2000. Application Ser. No. 10/374,780 is also a continuation-in-part of application Ser. No. 10/225,068, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,193,129), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, and also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, and also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001. Application Ser. No. 10/225,068 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). Application Ser. No. 10/374,780 is also a continuation-in-part of application Ser. No. 10/225,066, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,238,860), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, which also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, which also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; application Ser. No. 10/225,066 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). Application Ser. No. 10/374,780 is also a continuation-in-part of application Ser. No. 10/225,067, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,135,616), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, and also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, and also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; application Ser. No. 10/225,067 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). This application is a continuation-in-part of application Ser. No. 10/546,266, filed Aug. 19, 2005 (pending), which is a '371 National Stage filing of International Application No. PCT/US2004005654, filed Feb. 25, 2004 (converted), which is a continuation-in-part of application Ser. No. 10/374,780, filed Feb. 25, 2003 (pending), and is also a continuation-in-part of application Ser. No. 10/675,852, filed Sep. 30, 2003 (pending). This application is also a continuation-in-part of application Ser. No. 11/986,992, filed Nov. 26, 2007, which is a division of application Ser. No. 10/412,699, filed Apr. 10, 2003 (issued as U.S. Pat. No. 7,345,217), which is a continuation-in-part of application Ser. No. 10/295,403, filed Nov. 15, 2002 (abandoned), which is a divisional of application Ser. No. 09/394,519, filed Sep. 13, 1999 (abandoned), which claims the benefit of Application No. 60/101,349, filed Sep. 22, 1998, which also claims the benefit of Application No. 60/103,312, filed Oct. 6, 1998, which also claims the benefit of Application No. 60/108,734, filed Nov. 17, 1998, which also claims the benefit of Application No. 60/113,409, filed Dec. 22, 1998. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 09/489,376, filed Jan. 21, 2000 (abandoned), which claimed priority to Application No. 60/116,841, filed Jan. 22, 1999. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/302,267, filed Nov. 22, 2002 (issued as U.S. Pat. No. 7,223,904), which is a divisional of application Ser. No. 09/506,720, filed Feb. 17, 2000 (abandoned), which claims the benefit of Application No. 60/120,880, filed Feb. 18, 1999, which also claims the benefit of Application No. 60/121,037, filed Feb. 22, 1999, which also claims the benefit of Application No. 60/124,278, filed Mar. 11, 1999, which also claims the benefit of Application No. 60/129,450, filed Apr. 15, 1999, which also claims the benefit of Application No. 60/135,134, filed May 20, 1999, which also claims the benefit of Application No. 60/144,153, filed Jul. 15, 1999, which also claims the benefit of Application No. 60/161,143, filed Oct. 22, 1999, which also claims the benefit of Application No. 60/162,656, filed Nov. 1, 1999. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/278,173, filed Oct. 21, 2002 (abandoned), which is a divisional of application Ser. No. 09/533,392, filed Mar. 22, 2000 (abandoned), which claims the benefit of Application No. 60/125,814, filed Mar. 23, 1999. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 09/533,029, filed Mar. 22, 2000 (issued as U.S. Pat. No. 6,664,446), which claims the benefit of Application No. 60/125,814, filed Mar. 23, 1999. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/278,536, filed Oct. 22, 2002 (abandoned), which is a divisional of application Ser. No. 09/532,591, filed Mar. 22, 2000 (abandoned), which claims priority to Application No. 60/125,814, filed Mar. 23, 1999. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 09/713,994, filed Nov. 16, 2000 (abandoned), which claims the benefit of Application No. 60/166,228, filed Nov. 17, 1999, which also claims the benefit of Application No. 60/197,899, filed Apr. 17, 2000, which also claims the benefit of Application No. 60/227,439, filed Aug. 22, 2000. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 09/819,142, filed Mar. 27, 2001. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 09/934,455, filed Aug. 22, 2001 (abandoned), which is a continuation-in-part of application Ser. No. 09/713,994, filed Nov. 16, 2000 (abandoned), which is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), which also claim the benefit of Application No. 60/227,439, filed Aug. 22, 2000. Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/225,068, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,193,129), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, which also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, which also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; and, application Ser. No. 10/225,068 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/225,066, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,238,860), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, which also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, which also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; and, application Ser. No. 10/225,066 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/225,067, filed Aug. 9, 2002 (issued as U.S. Pat. No. 7,135,616), which claims the benefit of Application No. 60/310,847, filed Aug. 9, 2001, which also claims the benefit of Application No. 60/336,049, filed Nov. 19, 2001, which also claims the benefit of Application No. 60/338,692, filed Dec. 11, 2001; and, application Ser. No. 10/225,067 is also a continuation-in-part of application Ser. No. 09/837,944, filed Apr. 18, 2001 (abandoned), and is also a continuation-in-part of application Ser. No. 10/171,468, filed Jun. 14, 2002 (abandoned). Application Ser. No. 10/412,699 is also a continuation-in-part of application Ser. No. 10/374,780, filed Feb. 25, 2003 (pending). This application is a continuation-in-part of application Ser. No. 10/559,441, filed Dec. 2, 2005 (pending), which is a '371 National Stage filing of International Application No. PCT/US2004/017768, filed Jun. 4, 2004 (converted), which is a continuation-in-part of application Ser. No. 10/456,882, filed Jun. 6, 2003 (abandoned). This application is a continuation-in-part of application Ser. No. 11/642,814, filed Dec. 20, 2006, which is a divisional of application Ser. No. 10/666,642, filed Sep. 18, 2003 (issued as U.S. Pat. No. 7,196,245), which claims the benefit of Application No. 60/411,837, filed Sep. 18, 2002, and also claims the benefit of Application No. 60/434,166, filed Dec. 17, 2002, and also claims the benefit of Application No. 60/465,809, filed Apr. 24, 2003. This application is a continuation-in-part of application Ser. No. 10/714,887, filed Nov. 13, 2003 (pending), which is a continuation-in-part of application Ser. No. 10/456,882, filed Jun. 6, 2003 (abandoned); and application Ser. No. 10/714,887 is also a continuation-in-part of application Ser. No. 10/666,642, filed Sep. 18, 2003 (issued as U.S. Pat. No. 7,196,245), which claims the benefit of Application No. 60/411,837, filed Sep. 18, 2002, which also claims the benefit of Application No. 60/434,166, filed Dec. 17, 2002, which also claims the benefit of Application No. 60/465,809, filed Apr. 24, 2003. This application is a continuation-in-part of application Ser. No. 11/435,388, filed May 15, 2006 (pending), which is a continuation-in-part of International Application No. PCT/US04/37584, filed Nov. 12, 2004 (converted), which is a continuation-in-part of application Ser. No. 10/714,887, filed Nov. 13, 2003, and also claims the benefit of Application No. 60/527,658, filed Dec. 5, 2003, and also claims the benefit of Application No. 60/542,928, filed Feb. 5, 2004. This application is a continuation-in-part of application Ser. No. 11/632,390, filed Jan. 11, 2007, which is a '371 National Stage filing of International Application No. PCT/US2005/025010, filed Jul. 14, 2005 (converted), which claims the benefit of Application No. 60/588,405, filed Jul. 14, 2004. This application is a continuation-in-part of application Ser. No. 12/064,961, filed Feb. 26, 2008 (pending), which is a continuation-in-part of PCT application PCT/US06/34615, filed Aug. 31, 2006 (expired), which claims the benefit of Application No. 60/713,952, filed Aug. 31, 2005 (pending). This application is a continuation-in-part of International Application no. PCT/US2006/34615, filed Aug. 31, 2006, which claims the benefit of Application No. 60/713,952, filed Aug. 31, 2005. This application is a continuation-in-part of application Ser. No. 10/903,236, filed Jul. 30, 2004 (pending), which is a continuation-in-part of application Ser. No. 10/456,882, filed Jun. 6, 2003 (abandoned), and is also a continuation-in-part of application Ser. No. 10/666,642, filed Sep. 18, 2003 (issued as U.S. Pat. No. 7,196,245), which claims the benefit of Application No. 60/411,837, filed Sep. 18, 2002, and also claims the benefit of Application No. 60/465,809, filed Apr. 24, 2003. This application is a continuation-in-part of application Ser. No. 11/699,973, filed Jan. 29, 2007, which is a continuation-in-part of International Application No. PCT/US2005-027151, filed Jul. 29, 2005 (converted), which is a continuation-in-part of application Ser. No. 10/903,236, filed Jul. 30, 2004 (pending). This application is a continuation-in-part of application Ser. No. 10/870,198, filed Jun. 16, 2004 (pending), which claims the benefit of Application No. 60/565,948, filed Apr. 26, 2004, which also claims the benefit of Application No. 60/527,658, filed Dec. 5, 2003, which also claims the benefit of Application No. 60/542,928, filed Feb. 5, 2005; and, Application No. 10/870,198 is also a continuation-in-part of application Ser. No. 10/669,824, filed Sep. 23, 2003 (pending), which is a continuation-in-part of application Ser. No. 09/823,676, filed Mar. 30, 2001 (issued as U.S. Pat. No. 6,717,034). This application is a continuation-in-part of application Ser. No. 10/838,616, filed May 4, 2004 (pending), which claims the benefit of Application No. 60/565,948, filed Apr. 26, 2004, and is a continuation-in-part of application Ser. No. 10/685,922, filed Oct. 14, 2003 (abandoned). This application is a continuation-in-part of International Application No. PCT/US2007/17321, filed Aug. 7, 2006 (pending), which claims the benefit of Application No. 60/836,243, filed Aug. 7, 2006. This application is a continuation-in-part of application Ser. No. 11/705,903, filed Feb. 12, 2007 (pending), which is a continuation-in-part of International Application No. PCT/US2006/34615, filed Aug. 31, 2006 (converted), which claims the benefit of Application No. 60/713,952, filed Aug. 31, 2005. This application is a continuation-in-part of application Ser. No. 11/821,448, filed Jun. 22, 2007 (pending), which claims priority to Application No. 60/817,886, filed Jun. 29, 2006. This application is a continuation-in-part of application Ser. No. 11/981,667, filed Oct. 31, 2007 (pending). This application is also a continuation-in-part of application Ser. No. 11/981,576 filed Oct. 31, 2007 (pending). This application is a continuation-in-part of International Application No. PCT/US2007/09124, filed Apr. 12, 2007 (pending), which claims priority to Application No. 60/791,663, filed Apr. 12, 2006. The contents of all applications herein are incorporated by reference in their entirety.


JOINT RESEARCH AGREEMENT
The claimed invention, in the field of functional genomics and the characterization of plant genes for the improvement of plants, was made by or on behalf of Mendel Biotechnology, Inc. and Monsanto Company as a result of activities undertaken within the scope of a joint research agreement in effect on or before the date the claimed invention was made.
FIELD OF THE INVENTION
The present invention relates to compositions and methods for transforming plants for the purpose of improving plant traits, including yield and fruit quality.
BACKGROUND OF THE INVENTION
Biotechnological improvement of plants. Biotechnology approaches involving the expression of single transgenes in crops have resulted in the successful commercial introduction of new plant traits, including herbicide (e.g., glyphosate) resistance, insect resistance (expression of Bacillus thuringiensis toxins) and virus resistance (overexpression of viral coat proteins). Plant genomics may also be used to achieve control over polygenic traits. Some traits that may be improved, resulting in better yield and crop quality, include:
Increased lycopene levels. Lycopene is a pigment responsible for color of fruits (e.g., the red color of tomatoes). Consumers tend to prefer fruit products with good color, and often specifically buy fruit and fruit products based on lycopene levels.
Lycopene and other carotenoids are also valuable anti-oxidants. Lycopene is the subject of an increasing number of medical studies that demonstrate its efficacy in preventing certain cancers—including prostate, lung, stomach and breast cancers. Potential impacts also include ultraviolet protection and coronary heard disease prevention.
Increased soluble solids. Increased soluble solids are highly valuable to fruit processors for the production of various products. Grapes, for example, are harvested when soluble solids have reached an appropriate level, and the quality of wine produced from grapes is to a large extent dependent on soluble solid content. Increased soluble solids are also important in the production of tomato paste, sauces and ketchup. Increasing soluble solids in tomatoes increases the value of processed tomato products and decreases processing costs. Savings come from reduced processing time and less energy consumption due to shortened cooking times needed to achieve desired soluble solids levels. A one percent increase in tomato soluble solids may be worth $100 to $200 million to the tomato processing industry.
Fruit Weight. Increased fruit weight, such as the weight of tomato fruit, may directly impact yield when the fruit is the primary crop product. This is true for tomato plants, used as a model system in the present studies, and, generally, other fruit crops.
Control of cellular processes in plants with transcription factors. Strategies for manipulating traits by altering a plant cell's transcription factor content can result in plants and crops with new and/or improved commercially valuable properties. For example, manipulation of the levels of selected transcription factors may result in increased expression of economically useful proteins or biomolecules in plants or improvement in other agriculturally relevant characteristics. Conversely, blocked or reduced expression of a transcription factor may reduce biosynthesis of unwanted compounds or remove an undesirable trait. Therefore, manipulating transcription factor levels in a plant offers tremendous potential in agricultural biotechnology for modifying a plant's traits, including traits that improve a plant's survival, yield and product quality.
SUMMARY OF THE INVENTION
The present invention relates to compositions and methods for modifying the genotype of a plant for the purpose of imparting desirable characteristics, including, but not limited to, yield and/or quality-related traits, and these characteristics may pertain to the fruit of the plant. The method steps include transforming a host plant cell with a DNA construct (such as an expression vector or a plasmid). The DNA construct comprises a polynucleotide that encodes a polypeptide that may regulate transcription. The polynucleotide is homologous to a polynucleotide of the invention provided in the Sequence Listing or Tables 7 or 8.
Once the host plant cell is transformed with the DNA construct, a plant may be regenerated from the transformed host plant cell to produce a plant having the desired yield or quality characteristic. Examples of yield and quality characteristics that may be improved by these method steps include increased fungal disease resistance, increased fruit weight, increased fruit number, increased lycopene, increased soluble solids, reduced fruit softening, increased plant vigor, and increased plant size.



BRIEF DESCRIPTION OF THE SEQUENCE LISTING AND FIGURES
The Sequence Listing provides exemplary polynucleotide and polypeptide sequences of the invention. The traits associated with the use of the sequences are included in the Examples.
The copy of the Sequence Listing, being submitted electronically with this patent application, provided under 37 CFR §1.821-1.825, is a read-only memory computer-readable file in ASCII text format. The Sequence Listing is named “MMBI-0070-2CIP_ST25.txt” and is 16,074 kilobytes in size (measured in MS-WINDOWS). The Sequence Listing file was created on Jun. 20, 2008. The Sequence Listing is herein incorporated by reference in its entirety.
FIG. 1 shows a conservative estimate of phylogenetic relationships among the orders of flowering plants (modified from Angiosperm Phylogeny Group (1998)). Those plants with a single cotyledon (monocots) are a monophyletic clade nested within at least two major lineages of dicots; the eudicots are further divided into rosids and asterids. Arabidopsis is a rosid eudicot classified within the order Brassicales; rice is a member of the monocot order Poales. FIG. 1 was adapted from Daly et al. (2001).
FIG. 2 shows a phylogenic dendogram depicting phylogenetic relationships of higher plant taxa, including clades containing tomato and Arabidopsis; adapted from Ku et al. (2000) and Chase et al. (1993).
FIG. 3 is a schematic diagram of activator and target vectors used for transformation of tomato to achieve regulated expression of Arabidopsis transcription factors in tomato. The activator vector contained a promoter and a LexA-GAL4 or a-LacI-GAL4 transactivator (the transactivator comprises a LexA or LacI DNA binding domain fused to the GAL4 activation domain, and encodes a LexA-Gal4 or LacI-Gal4 transcriptional activator product), a GFP marker, and a neomycin phosphotransferase II (nptII) selectable marker. The target vector contains a transactivator binding site (opLexA) operably linked to a transgene encoding a polypeptide of interest (for example, a transcription factor of the invention), and a sulfonamide selectable marker (in this case, sulII; which encodes the dihydropteroate synthase enzyme for sulfonamide-resistance) necessary for the selection and identification of transformed plants. Binding of the transcriptional activator product encoded by the activator vector to the transactivator binding sites of the target vector initiates transcription of the transgenes of interest.



DESCRIPTION OF THE INVENTION
In an important aspect, the present invention relates to combinations of gene promoters and polynucleotides for modifying phenotypes of plants, including those associated with improved plant or fruit yield, or improved fruit quality. Throughout this disclosure, various information sources are referred to and/or are specifically incorporated. The information sources include scientific journal articles, patent documents, textbooks, and World Wide Web browser-active and inactive page addresses, for example. While the reference to these information sources clearly indicates that they can be used by one of skill in the art, each and every one of the information sources cited herein are specifically incorporated in their entirety, whether or not a specific mention of “incorporation by reference” is noted. The contents and teachings of each and every one of the information sources can be relied on and used to make and use embodiments of the invention.
As used herein and in the appended claims, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly dictates otherwise. Thus, for example, a reference to “a plant” includes a plurality of such plants.
DEFINITIONS
“Polynucleotide” is a nucleic acid molecule comprising a plurality of polymerized nucleotides, e.g., at least about 15 consecutive polymerized nucleotides, optionally at least about 30 consecutive nucleotides, or at least about 50 consecutive nucleotides. A polynucleotide may be a nucleic acid, oligonucleotide, nucleotide, or any fragment thereof of a length listed above. In many instances, a polynucleotide comprises a nucleotide sequence encoding a polypeptide (or protein) or a domain or fragment thereof. Additionally, the polynucleotide may comprise a promoter, an intron, an enhancer region, a polyadenylation site, a translation initiation site, 5′ or 3′ untranslated regions, a reporter gene, a selectable marker, or the like. The polynucleotide can be single stranded or double stranded DNA or RNA. The polynucleotide optionally comprises modified bases or a modified backbone. The polynucleotide can be, e.g., genomic DNA or RNA, a transcript (such as an mRNA), a cDNA, a polymerase chain reaction (PCR) product, a cloned DNA, a synthetic DNA or RNA, or the like. The polynucleotide can be combined with carbohydrate, lipids, protein, or other materials to perform a particular activity such as transformation or form a useful composition such as a peptide nucleic acid (PNA). The polynucleotide can comprise a sequence in either sense or antisense orientations. “Oligonucleotide” is substantially equivalent to the terms amplimer, primer, oligomer, element, target, and probe and is preferably single stranded.
A “recombinant polynucleotide” is a polynucleotide that is not in its native state, e.g., the polynucleotide comprises a nucleotide sequence not found in nature, or the polynucleotide is in a context other than that in which it is naturally found, e.g., separated from nucleotide sequences with which it typically is in proximity in nature, or adjacent (or contiguous with) nucleotide sequences with which it typically is not in proximity. For example, the sequence at issue can be cloned into a vector, or otherwise recombined with one or more additional nucleic acid.
“Gene” or “gene sequence” refers to the partial or complete coding sequence of a gene, its complement, and its 5′ or 3′ untranslated regions. A gene is also a functional unit of inheritance, and in physical terms is a particular segment or sequence of nucleotides along a molecule of DNA (or RNA, in the case of RNA viruses) involved in producing a polypeptide chain. The latter may be subjected to subsequent processing such as splicing and folding to obtain a functional protein or polypeptide. A gene may be isolated, partially isolated, or be found with an organism's genome. By way of example, a transcription factor gene encodes a transcription factor polypeptide, which may be functional or require processing to function as an initiator of transcription.
Operationally, genes may be defined by the cis-trans test, a genetic test that determines whether two mutations occur in the same gene and which may be used to determine the limits of the genetically active unit (Rieger et al. (1976)). A gene generally includes regions preceding (“leaders”; upstream) and following (“trailers”; downstream) of the coding region. A gene may also include intervening, non-coding sequences, referred to as “introns”, located between individual coding segments, referred to as “exons”. Most genes have an associated promoter region, a regulatory sequence 5′ of the transcription initiation codon (there are some genes that do not have an identifiable promoter). The function of a gene may also be regulated by enhancers, operators, and other regulatory elements.
An “isolated polynucleotide” is a polynucleotide whether naturally occurring or recombinant, that is present outside the cell in which it is typically found in nature, whether purified or not. Optionally, an isolated polynucleotide is subject to one or more enrichment or purification procedures, e.g., cell lysis, extraction, centrifugation, precipitation, or the like.
“Complementary” refers to the natural hydrogen bonding by base pairing between purines and pyrimidines. For example, the sequence A-C-G-T (5′->3′) forms hydrogen bonds with its complements A-C-G-T (5′->3′) or A-C-G-U (5′->3′). Two single-stranded molecules may be considered partially complementary, if only some of the nucleotides bond, or “completely complementary” if all of the nucleotides bond. The degree of complementarity between nucleic acid strands affects the efficiency and strength of the hybridization and amplification reactions. “Fully complementary” refers to the case where bonding occurs between every base pair and its complement in a pair of sequences, notwithstanding gaps that may occur in an alignment due to additional bases in one of the aligned sequences.
The terms “highly stringent” or “highly stringent condition” refer to conditions that permit hybridization of DNA strands whose sequences are highly complementary, wherein these same conditions exclude hybridization of significantly mismatched DNAs. Polynucleotide sequences capable of hybridizing under stringent conditions with the polynucleotides of the present invention may be, for example, variants of the disclosed polynucleotide sequences, including allelic or splice variants, or sequences that encode orthologs or paralogs of presently disclosed polypeptides. Nucleic acid hybridization methods are disclosed in detail by Kashima et al. (1985), Sambrook et al. (1989), and by Hames and Higgins (1985), which references are incorporated herein by reference.
In general, stringency is determined by the temperature, ionic strength, and concentration of denaturing agents (e.g., formamide) used in a hybridization and washing procedure (for a more detailed description of establishing and determining stringency, see below). The degree to which two nucleic acids hybridize under various conditions of stringency is correlated with the extent of their similarity. Thus, similar nucleic acid sequences from a variety of sources, such as within a plant's genome (as in the case of paralogs) or from another plant (as in the case of orthologs) that may perform similar functions can be isolated on the basis of their ability to hybridize with known transcription factor sequences. Numerous variations are possible in the conditions and means by which nucleic acid hybridization can be performed to isolate transcription factor sequences having similarity to transcription factor sequences known in the art and are not limited to those explicitly disclosed herein. Such an approach may be used to isolate polynucleotide sequences having various degrees of similarity with disclosed transcription factor sequences, such as, for example, transcription factors having 60% identity, or more preferably greater than about 70% identity, most preferably 72% or greater identity with disclosed transcription factors.
The term “transcript profile” refers to the expression levels of a set of genes in a cell in a particular state, particularly by comparison with the expression levels of that same set of genes in a cell of the same type in a reference state. For example, the transcript profile of a particular transcription factor in a suspension cell is the expression levels of a set of genes in a cell knocking out or overexpressing that transcription factor compared with the expression levels of that same set of genes in a suspension cell that has normal levels of that transcription factor. The transcript profile can be presented as a list of those genes whose expression level is significantly different between the two treatments, and the difference ratios. Differences and similarities between expression levels may also be evaluated and calculated using statistical and clustering methods.
“Ectopic expression” or “altered expression” in reference to a polynucleotide indicates that the pattern of expression in, e.g., a transgenic plant or plant tissue, is different from the expression pattern in a wild-type or control plant of the same species. The pattern of expression may also be compared with a reference expression pattern in a wild-type plant of the same species. For example, the polynucleotide or polypeptide is expressed in a cell or tissue type other than a cell or tissue type in which the sequence is expressed in the wild-type plant, or by expression at a time other than at the time the sequence is expressed in the wild-type plant, or by a response to different inducible agents, such as hormones or environmental signals, or at different expression levels (either higher or lower) compared with those found in a wild-type plant. The term also refers to altered expression patterns that are produced by lowering the levels of expression to below the detection level or completely abolishing expression. The resulting expression pattern can be transient or stable, constitutive or inducible. In reference to a polypeptide, the term “ectopic expression or altered expression” further may relate to altered activity levels resulting from the interactions of the polypeptides with exogenous or endogenous modulators or from interactions with factors or as a result of the chemical modification of the polypeptides.
The term “overexpression” as used herein refers to a greater expression level of a gene in a plant, plant cell or plant tissue, compared to expression in a wild-type plant, cell or tissue, at any developmental or temporal stage for the gene. Overexpression can occur when, for example, the genes encoding one or more transcription factors are under the control of a strong promoter (e.g., the cauliflower mosaic virus 35S transcription initiation region). Overexpression may also under the control of an inducible or tissue specific promoter. Thus, overexpression may occur throughout a plant, in specific tissues of the plant, or in the presence or absence of particular environmental signals, depending on the promoter used.
Overexpression may take place in plant cells normally lacking expression of polypeptides functionally equivalent or identical to the present transcription factors. Overexpression may also occur in plant cells where endogenous expression of the present transcription factors or functionally equivalent molecules normally occurs, but such normal expression is at a lower level. Overexpression thus results in a greater than normal production, or “overproduction” of the transcription factor in the plant, cell or tissue.
The term “transcription regulating region” refers to a DNA regulatory sequence that regulates expression of one or more genes in a plant when a transcription factor having one or more specific binding domains binds to the DNA regulatory sequence. Transcription factors of the present invention generally possess at least one conserved domain characteristic of a particular transcription factor family. Examples of such conserved domains of the sequences of the invention may be found in Table 7. The transcription factors of the invention may also comprise an amino acid subsequence that forms a transcription activation domain that regulates expression of one or more abiotic stress tolerance genes in a plant when the transcription factor binds to the regulating region.
“Protein” refers to an amino acid sequence, oligopeptide, peptide, polypeptide or portions thereof whether naturally occurring or synthetic.
A “polypeptide” is an amino acid sequence comprising a plurality of consecutive polymerized amino acid residues e.g., at least about 15 consecutive polymerized amino acid residues, optionally at least about 30 consecutive polymerized amino acid residues, at least about 50 consecutive polymerized amino acid residues. In many instances, a polypeptide comprises a polymerized amino acid residue sequence that is a transcription factor or a domain or portion or fragment thereof. Additionally, the polypeptide may comprise 1) a localization domain, 2) an activation domain, 3) a repression domain, 4) an oligomerization domain, or 5) a DNA-binding domain, or the like. The polypeptide optionally comprises modified amino acid residues, naturally occurring amino acid residues not encoded by a codon, non-naturally occurring amino acid residues.
A “recombinant polypeptide” is a polypeptide produced by translation of a recombinant polynucleotide. A “synthetic polypeptide” is a polypeptide created by consecutive polymerization of isolated amino acid residues using methods well known in the art. An “isolated polypeptide,” whether a naturally occurring or a recombinant polypeptide, is more enriched in (or out of) a cell than the polypeptide in its natural state in a wild-type cell, e.g., more than about 5% enriched, more than about 10% enriched, or more than about 20%, or more than about 50%, or more, enriched, i.e., alternatively denoted: 105%, 110%, 120%, 150% or more, enriched relative to wild type standardized at 100%. Such an enrichment is not the result of a natural response of a wild-type plant. Alternatively, or additionally, the isolated polypeptide is separated from other cellular components with which it is typically associated, e.g., by any of the various protein purification methods herein.
“Homology” refers to sequence similarity between a reference sequence and at least a fragment of a newly sequenced clone insert or its encoded amino acid sequence. Additionally, the terms “homology” and “homologous sequence(s)” may refer to one or more polypeptide sequences that are modified by chemical or enzymatic means. The homologous sequence may be a sequence modified by lipids, sugars, peptides, organic or inorganic compounds, by the use of modified amino acids or the like. Protein modification techniques are illustrated in Ausubel et al. (1998).
“Identity” or “similarity” refers to sequence similarity between two polynucleotide sequences or between two polypeptide sequences, with identity being a more strict comparison. The phrases “percent identity” and “% identity” refer to the percentage of sequence similarity found in a comparison of two or more polynucleotide sequences or two or more polypeptide sequences. “Sequence similarity” refers to the percent similarity in base pair sequence (as determined by any suitable method) between two or more polynucleotide sequences. Two or more sequences can be anywhere from 0-100% similar, or any integer value therebetween. Identity or similarity can be determined by comparing a position in each sequence that may be aligned for purposes of comparison. When a position in the compared sequence is occupied by the same nucleotide base or amino acid, then the molecules are identical at that position. A degree of similarity or identity between polynucleotide sequences is a function of the number of identical or matching nucleotides at positions shared by the polynucleotide sequences. A degree of identity of polypeptide sequences is a function of the number of identical amino acids at positions shared by the polypeptide sequences. A degree of homology or similarity of polypeptide sequences is a function of the number of amino acids at positions shared by the polypeptide sequences.
With regard to polypeptides, the terms “substantial identity” or “substantially identical” may refer to sequences of sufficient similarity and structure to the transcription factors in the Sequence Listing to produce similar function when expressed, overexpressed, or knocked-out in a plant; in the present invention, this function is improved yield and/or fruit quality. Polypeptide sequences that are at least about 55% identical to the instant polypeptide sequences are considered to have “substantial identity” with the latter. Sequences having lesser degrees of identity but comparable biological activity are considered to be equivalents. The structure required to maintain proper functionality is related to the tertiary structure of the polypeptide. There are discreet domains and motifs within a transcription factor that must be present within the polypeptide to confer function and specificity. These specific structures are required so that interactive sequences will be properly oriented to retain the desired activity. “Substantial identity” may thus also be used with regard to subsequences, for example, motifs that are of sufficient structure and similarity, being at least about 55% identical to similar motifs in other related sequences. Thus, related polypeptides within the G1421 clade have the physical characteristics of substantial identity along their full length and within their AP2-related domains. These polypeptides also share functional characteristics, as the polypeptides within this clade bind to a transcription-regulating region of DNA and improve yield and/or fruit quality in a plant when the polypeptides are overexpressed.
“Alignment” refers to a number of nucleotide or amino acid residue sequences aligned by lengthwise comparison so that components in common (i.e., nucleotide bases or amino acid residues) may be visually and readily identified. The fraction or percentage of components in common is related to the homology or identity between the sequences. Alignments may be used to identify conserved domains and relatedness within these domains. An alignment may suitably be determined by means of computer programs known in the art, such as MacVector (1999) (Accelrys, Inc., San Diego, Calif.).
A “conserved domain” or “conserved region” as used herein refers to a region in heterologous polynucleotide or polypeptide sequences where there is substantial identity between the distinct sequences. bZIPT2-related domains are examples of conserved domains. With respect to polynucleotides encoding presently disclosed transcription factors, a conserved domain is encoded by a sequence preferably at least 10 base pairs (bp) in length. A conserved domain, with respect to presently disclosed polypeptides refers to a domain within a transcription factor family that exhibits a higher degree of sequence homology or substantial identity, such as at least 55%, at least about 56%, at least about 57%, at least about 58%, at least about 59%, at least about 60%, at least about 61%, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71%, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% amino acid residue sequence identity to a sequence of consecutive amino acid residues such as SEQ ID NOs 2365-4175. As one of ordinary skill in the art recognizes, conserved domains may be identified as regions or domains of identity to a specific consensus sequence. Thus, by using alignment methods well known in the art, the conserved domains of the plant transcription factors of the invention (e.g., bZIPT2, MYB-related, CCAAT-box binding, AP2, and AT-hook family transcription factors) may be determined. An alignment of any of the polypeptides of the invention with another polypeptide allows one of skill in the art to identify conserved domains for any of the polypeptides listed or referred to in this disclosure.
The terms “paralog” and “ortholog” are defined below in the section entitled “Orthologs and Paralogs”. In brief, orthologs and paralogs are evolutionarily related genes that have similar sequences and functions. Orthologs are structurally related genes in different species that are derived by a speciation event. Paralogs are structurally related genes within a single species that are derived by a duplication event.
The term “equivalog” describes members of a set of homologous proteins that are conserved with respect to function since their last common ancestor. Related proteins are grouped into equivalog families, and otherwise into protein families with other hierarchically defined homology types. This definition is provided at the Institute for Genomic Research (TIGR) World Wide Web (www) website, “tigr.org” under the heading “Terms associated with TIGRFAMs”.
The term “variant”, as used herein, may refer to polynucleotides or polypeptides that differ from the presently disclosed polynucleotides or polypeptides, respectively, in sequence from each other, and as set forth below.
With regard to polynucleotide variants, differences between presently disclosed polynucleotides and polynucleotide variants are limited so that the nucleotide sequences of the former and the latter are closely similar overall and, in many regions, identical. Due to the degeneracy of the genetic code, differences between the former and latter nucleotide sequences may be silent (i.e., the amino acids encoded by the polynucleotide are the same, and the variant polynucleotide sequence encodes the same amino acid sequence as the presently disclosed polynucleotide. Variant nucleotide sequences may encode different amino acid sequences, in which case such nucleotide differences will result in amino acid substitutions, additions, deletions, insertions, truncations or fusions with respect to the similar disclosed polynucleotide sequences. These variations result in polynucleotide variants encoding polypeptides that share at least one functional characteristic. The degeneracy of the genetic code also dictates that many different variant polynucleotides can encode identical and/or substantially similar polypeptides in addition to those sequences illustrated in the Sequence Listing.
Also within the scope of the invention is a variant of a transcription factor nucleic acid listed in the Sequence Listing, that is, one having a sequence that differs from the one of the polynucleotide sequences in the Sequence Listing, or a complementary sequence, that encodes a functionally equivalent polypeptide (i.e., a polypeptide having some degree of equivalent or similar biological activity) but differs in sequence from the sequence in the Sequence Listing, due to degeneracy in the genetic code. Included within this definition are polymorphisms that may or may not be readily detectable using a particular oligonucleotide probe of the polynucleotide encoding polypeptide, and improper or unexpected hybridization to allelic variants, with a locus other than the normal chromosomal locus for the polynucleotide sequence encoding polypeptide.
“Allelic variant” or “polynucleotide allelic variant” refers to any of two or more alternative forms of a gene occupying the same chromosomal locus. Allelic variation arises naturally through mutation, and may result in phenotypic polymorphism within populations. Gene mutations may be “silent” or may encode polypeptides having altered amino acid sequence. “Allelic variant” and “polypeptide allelic variant” may also be used with respect to polypeptides, and in this case the terms refer to a polypeptide encoded by an allelic variant of a gene.
“Splice variant” or “polynucleotide splice variant” as used herein refers to alternative forms of RNA transcribed from a gene. Splice variation naturally occurs as a result of alternative sites being spliced within a single transcribed RNA molecule or between separately transcribed RNA molecules, and may result in several different forms of mRNA transcribed from the same gene. This, splice variants may encode polypeptides having different amino acid sequences, which may or may not have similar functions in the organism. “Splice variant” or “polypeptide splice variant” may also refer to a polypeptide encoded by a splice variant of a transcribed mRNA.
As used herein, “polynucleotide variants” may also refer to polynucleotide sequences that encode paralogs and orthologs of the presently disclosed polypeptide sequences. “Polypeptide variants” may refer to polypeptide sequences that are paralogs and orthologs of the presently disclosed polypeptide sequences.
Differences between presently disclosed polypeptides and polypeptide variants are limited so that the sequences of the former and the latter are closely similar overall and, in many regions, identical. Presently disclosed polypeptide sequences and similar polypeptide variants may differ in amino acid sequence by one or more substitutions, additions, deletions, fusions and truncations, which may be present in any combination. These differences may produce silent changes and result in a functionally equivalent transcription factor. Thus, it will be readily appreciated by those of skill in the art, that any of a variety of polynucleotide sequences is capable of encoding the transcription factors and transcription factor homolog polypeptides of the invention. A polypeptide sequence variant may have “conservative” changes, wherein a substituted amino acid has similar structural or chemical properties. Deliberate amino acid substitutions may thus be made on the basis of similarity in polarity, charge, solubility, hydrophobicity, hydrophilicity, and/or the amphipathic nature of the residues, as long as the functional or biological activity of the transcription factor is retained. For example, negatively charged amino acids may include aspartic acid and glutamic acid, positively charged amino acids may include lysine and arginine, and amino acids with uncharged polar head groups having similar hydrophilicity values may include leucine, isoleucine, and valine; glycine and alanine; asparagine and glutamine; serine and threonine; and phenylalanine and tyrosine. More rarely, a variant may have “non-conservative” changes, for example, replacement of a glycine with a tryptophan. Similar minor variations may also include amino acid deletions or insertions, or both. Related polypeptides may comprise, for example, additions and/or deletions of one or more N-linked or O-linked glycosylation sites, or an addition and/or a deletion of one or more cysteine residues. Guidance in determining which and how many amino acid residues may be substituted, inserted or deleted without abolishing functional or biological activity may be found using computer programs well known in the art, for example, DNASTAR software (see U.S. Pat. No. 5,840,544).
“Fragment”, with respect to a polynucleotide, refers to a clone or any part of a polynucleotide molecule that retains a usable, functional characteristic. Useful fragments include oligonucleotides and polynucleotides that may be used in hybridization or amplification technologies or in the regulation of replication, transcription or translation. A polynucleotide fragment” refers to any subsequence of a polynucleotide, typically, of at least about 9 consecutive nucleotides, preferably at least about 30 nucleotides, more preferably at least about 50 nucleotides, of any of the sequences provided herein. Exemplary polynucleotide fragments are the first sixty consecutive nucleotides of the transcription factor polynucleotides listed in the Sequence Listing. Exemplary fragments also include fragments that comprise a region that encodes an conserved domain of a transcription factor. Exemplary fragments also include fragments that comprise a conserved domain of a transcription factor. Exemplary fragments include fragments that comprise a conserved domain of a transcription factor, for example, amino acids: 84-146 of G1421, SEQ ID NO: 180, or 59-150 of G1437, SEQ ID NO: 186, or 9-111 of G663, SEQ ID NO: 1192, or 52-143 of G1957, SEQ ID NO: 446, which comprise, are comprised within, or approximate, the AP2 DNA binding domain, the QLQ/WRC protein interaction/putative DNA binding domains, the SANT/Myb DNA binding domain, or the B3 DNA binding domain of these polypeptides, respectively.
Fragments may also include subsequences of polypeptides and protein molecules, or a subsequence of the polypeptide. Fragments may have uses in that they may have antigenic potential. In some cases, the fragment or domain is a subsequence of the polypeptide which performs at least one biological function of the intact polypeptide in substantially the same manner, or to a similar extent, as does the intact polypeptide. For example, a polypeptide fragment can comprise a recognizable structural motif or functional domain such as a DNA-binding site or domain that binds to a DNA promoter region, an activation domain, or a domain for protein-protein interactions, and may initiate transcription. Fragments can vary in size from as few as three amino acid residues to the full length of the intact polypeptide, but are preferably at least about 30 amino acid residues in length and more preferably at least about 60 amino acid residues in length.
The invention also encompasses production of DNA sequences that encode transcription factors and transcription factor derivatives, or fragments thereof, entirely by synthetic chemistry. After production, the synthetic sequence may be inserted into any of the many available expression vectors and cell systems using reagents well known in the art. Moreover, synthetic chemistry may be used to introduce mutations into a sequence encoding transcription factors or any fragment thereof.
The term “plant” includes whole plants, shoot vegetative organs/structures (for example, leaves, stems and tubers), roots, flowers and floral organs/structures (for example, bracts, sepals, petals, stamens, carpels, anthers and ovules), seed (including embryo, endosperm, and seed coat) and fruit (the mature ovary), plant tissue (for example, vascular tissue, ground tissue, and the like) and cells for example, guard cells, egg cells, and the like), and progeny of same. The class of plants that can be used in the method of the invention is generally as broad as the class of higher and lower plants amenable to transformation techniques, including angiosperms (monocotyledonous and dicotyledonous plants), gymnosperms, ferns, horsetails, psilophytes, lycophytes, bryophytes, and multicellular algae (see for example, FIG. 1, adapted from Daly et al. (2001); FIG. 2, adapted from Ku et al. (2000); and see also Tudge (2000).
A “transgenic plant” refers to a plant that contains genetic material not found in a wild-type plant of the same species, variety or cultivar. The genetic material may include a transgene, an insertional mutagenesis event (such as by transposon or T-DNA insertional mutagenesis), an activation tagging sequence, a mutated sequence, a homologous recombination event or a sequence modified by chimeraplasty. Typically, the foreign genetic material has been introduced into the plant by human manipulation, but any method can be used as one of skill in the art recognizes.
A transgenic plant may contain an expression vector or cassette. The expression cassette typically comprises a polypeptide-encoding sequence operably linked (i.e., under regulatory control of) to appropriate inducible or constitutive regulatory sequences that allow for the controlled expression of polypeptide. The expression cassette can be introduced into a plant by transformation or by breeding after transformation of a parent plant. A plant refers to a whole plant as well as to a plant part, such as seed, fruit, leaf, or root, plant tissue, plant cells or any other plant material, e.g., a plant explant, as well as to progeny thereof, and to in vitro systems that mimic biochemical or cellular components or processes in a cell.
“Wild type” or “wild-type”, as used herein, refers to a plant cell, seed, plant component, plant tissue, plant organ or whole plant that has not been genetically modified or treated in an experimental sense. Wild-type cells, seed, components, tissue, organs or whole plants may be used as controls to compare levels of expression and the extent and nature of trait modification with cells, tissue or plants of the same species in which a transcription factor expression is altered, e.g., in that it has been knocked out, overexpressed, or ectopically expressed.
A “control plant” as used in the present invention refers to a plant cell, seed, plant component, plant tissue, plant organ or whole plant used to compare against transgenic or genetically modified plant for the purpose of identifying an enhanced phenotype in the transgenic or genetically modified plant. A control plant may in some cases be a transgenic plant line that comprises an empty vector or marker gene, but does not contain the recombinant polynucleotide of the present invention that is expressed in the transgenic or genetically modified plant being evaluated. In general, a control plant is a plant of the same line or variety as the transgenic or genetically modified plant being tested. A suitable control plant would include a genetically unaltered or non-transgenic plant of the parental line used to generate a transgenic plant herein.
A “trait” refers to a physiological, morphological, biochemical, or physical characteristic of a plant or particular plant material or cell. In some instances, this characteristic is visible to the human eye, such as seed or plant size, or can be measured by biochemical techniques, such as detecting the protein, starch, or oil content of seed or leaves, or by observation of a metabolic or physiological process, e.g. by measuring tolerance to water deprivation or particular salt or sugar concentrations, or by the observation of the expression level of a gene or genes, e.g., by employing Northern analysis, RT-PCR, microarray gene expression assays, or reporter gene expression systems, or by agricultural observations such as osmotic stress tolerance or yield. Any technique can be used to measure the amount of, comparative level of, or difference in any selected chemical compound or macromolecule in the transgenic plants, however.
“Trait modification” refers to a detectable difference in a characteristic in a plant ectopically expressing a polynucleotide or polypeptide of the present invention relative to a plant not doing so, such as a wild-type plant. In some cases, the trait modification can be evaluated quantitatively. For example, the trait modification can entail at least about a 2% increase or decrease, or an even greater difference, in an observed trait as compared with a control or wild-type plant. It is known that there can be a natural variation in the modified trait. Therefore, the trait modification observed entails a change of the normal distribution and magnitude of the trait in the plants as compared to control or wild-type plants.
DETAILED DESCRIPTION
Generally, the polypeptides encoded by the present polynucleotide sequences are involved in cell differentiation, proliferation, and the regulation of growth. Accordingly, one skilled in the art would recognize that by expressing the present sequences in a plant, one may change the expression of autologous genes or induce the expression of introduced genes. By affecting the expression of similar autologous sequences in a plant that have the biological activity of the present sequences, or by introducing the present sequences into a plant, one may alter a plant's phenotype to one with improved traits related to improved yield and/or fruit quality. The sequences of the invention may also be used to transform a plant and introduce desirable traits not found in the wild-type cultivar or strain. Plants may then be selected for those that produce the most desirable degree of over- or under-expression of target genes of interest and coincident trait improvement.
The sequences of the present invention may be from any species, particularly plant species, in a naturally occurring form or from any source whether natural, synthetic, semi-synthetic or recombinant. The sequences of the invention may also include fragments of the present amino acid sequences. Where “amino acid sequence” is recited to refer to an amino acid sequence of a naturally occurring protein molecule, “amino acid sequence” and like terms are not meant to limit the amino acid sequence to the complete native amino acid sequence associated with the recited protein molecule.
In addition to methods for modifying a plant phenotype by employing one or more polynucleotides and polypeptides of the invention described herein, the polynucleotides and polypeptides of the invention have a variety of additional uses. These uses include their use in the recombinant production (i.e., expression) of proteins; as regulators of plant gene expression, as diagnostic probes for the presence of complementary or partially complementary nucleic acids (including for detection of natural coding nucleic acids); as substrates for further reactions, for example, mutation reactions, PCR reactions, or the like; as substrates for cloning for example, including digestion or ligation reactions; and for identifying exogenous or endogenous modulators of the transcription factors. In many instances, a polynucleotide comprises a nucleotide sequence encoding a polypeptide (or protein) or a domain or fragment thereof. Additionally, the polynucleotide may comprise a promoter, an intron, an enhancer region, a polyadenylation site, a translation initiation site, 5′ or 3′ untranslated regions, a reporter gene, a selectable marker, or the like. The polynucleotide can be single stranded or double stranded DNA or RNA. The polynucleotide optionally comprises modified bases or a modified backbone. The polynucleotide can be, for example, genomic DNA or RNA, a transcript (such as an mRNA), a cDNA, a PCR product, a cloned DNA, a synthetic DNA or RNA, or the like. The polynucleotide can comprise a sequence in either sense or antisense orientations. Expression of genes that encode transcription factors and other regulatory proteins that modify expression of endogenous genes, polynucleotides, and proteins are well known in the art. In addition, transgenic plants comprising isolated polynucleotides encoding transcription factors may also modify expression of endogenous genes, polynucleotides, and proteins. Examples include Peng et al. (1997) and Peng et al. (1999). In addition, many others have demonstrated that an Arabidopsis transcription factor expressed in an exogenous plant species elicits the same or very similar phenotypic response (see, for example, Fu et al. (2001); Nandi et al. (2000); Coupland (1995); and Weigel and Nilsson (1995)).
In another example, Mandel et al. (1992b) and Suzuki et al. (2001) teach that a transcription factor expressed in another plant species elicits the same or very similar phenotypic response of the endogenous sequence, as often predicted in earlier studies of Arabidopsis transcription factors in Arabidopsis (see Mandel et al. (1992b); Suzuki et al. (2001)).
Other examples include Müller et al. (2001); Kim et al. (2001); Kyozuka and Shimamoto (2002); Boss and Thomas (2002); He et al. (2000); and Robson et al. (2001).
In yet another example, Gilmour et al. (1998) teach an Arabidopsis AP2 transcription factor, CBF1, which, when overexpressed in transgenic plants, increases plant freezing tolerance. Jaglo et al. (2001) further identified sequences in Brassica napus that encode CBF-like genes and that transcripts for these genes accumulated rapidly in response to low temperature. Transcripts encoding CBF-like proteins were also found to accumulate rapidly in response to low temperature in wheat, as well as in tomato. An alignment of the CBF proteins from Arabidopsis, B. napus, wheat, rye, and tomato revealed the presence of conserved consecutive amino acid residues which bracket the AP2/EREBP DNA binding domains of the proteins and distinguish them from other members of the AP2/EREBP protein family (Jaglo et al. (2001).
Transcription factors mediate cellular responses and control traits through altered expression of genes containing cis-acting nucleotide sequences that are targets of the introduced transcription factor. It is well appreciated in the art that the effect of a transcription factor on cellular responses or a cellular trait is determined by the particular genes whose expression is either directly or indirectly (for example, by a cascade of transcription factor binding events and transcriptional changes) altered by transcription factor binding. In a global analysis of transcription comparing a standard condition with one in which a transcription factor is overexpressed, the resulting transcript profile associated with transcription factor overexpression is related to the trait or cellular process controlled by that transcription factor. For example, the PAP2 gene and other genes in the MYB family have been shown to control anthocyanin biosynthesis through regulation of the expression of genes known to be involved in the anthocyanin biosynthetic pathway (Bruce et al. (2000); Borevitz et al. (2000)). Further, global transcript profiles have been used successfully as diagnostic tools for specific cellular states (for example, cancerous vs. non-cancerous; Bhattacharjee et al. (2001); Xu et al. (2001)). Consequently, it is evident to one skilled in the art that similarity of transcript profile upon overexpression of different transcription factors would indicate similarity of transcription factor function.
Polypeptides and Polynucleotides of the Invention
The present invention provides, among other things, transcription factors, and transcription factor homolog polypeptides, and isolated or recombinant polynucleotides encoding the polypeptides, or novel sequence variant polypeptides or polynucleotides encoding novel variants of transcription factors derived from the specific sequences provided here.
The polynucleotides of the invention can be or were ectopically expressed in overexpressor plant cells and the changes in the expression levels of a number of genes, polynucleotides, and/or proteins of the plant cells observed. Therefore, the polynucleotides and polypeptides can be employed to change expression levels of a genes, polynucleotides, and/or proteins of plants. These polypeptides and polynucleotides may be employed to modify a plant's characteristics, particularly improvement of yield and/or fruit quality. The polynucleotides of the invention can be or were ectopically expressed in overexpressor or knockout plants and the changes in the characteristic(s) or trait(s) of the plants observed. Therefore, the polynucleotides and polypeptides can be employed to improve the characteristics of plants. The polypeptide sequences of the sequence listing, including Arabidopsis sequences, such as those in Table 7, conferred improved characteristics when these polypeptides were overexpressed in tomato plants. These polynucleotides have been shown to confer increased lycopene levels and/or increased soluble solids, which impacts fruit quality, and/or increased fruit weight, which positively impacts fruit yield. Paralogs and orthologs of these sequences, listed herein, are expected to function in a similar manner by increasing these positive effects on fruit quality and/or yield.
The invention also encompasses sequences that are complementary to the polynucleotides of the invention. The polynucleotides are also useful for screening libraries of molecules or compounds for specific binding and for creating transgenic plants having improved yield and/or fruit quality. Altering the expression levels of equivalogs of these sequences, including paralogs and orthologs in the Sequence Listing, and other orthologs that are structurally and sequentially similar to the former orthologs, has been shown and is expected to confer similar phenotypes, including improved biomass, yield and/or fruit quality in plants.
In some cases, exemplary polynucleotides encoding the polypeptides of the invention were identified in the Arabidopsis thaliana GenBank database using publicly available sequence analysis programs and parameters. Sequences initially identified were then further characterized to identify sequences comprising specified sequence strings corresponding to sequence motifs present in families of known transcription factors. In addition, further exemplary polynucleotides encoding the polypeptides of the invention were identified in the plant GenBank database using publicly available sequence analysis programs and parameters. Sequences initially identified were then further characterized to identify sequences comprising specified sequence strings corresponding to sequence motifs present in families of known transcription factors. Polynucleotide sequences meeting such criteria were confirmed as transcription factors.
Additional polynucleotides of the invention were identified by screening Arabidopsis thaliana and/or other plant cDNA libraries with probes corresponding to known transcription factors under low stringency hybridization conditions. Additional sequences, including full length coding sequences were subsequently recovered by the rapid amplification of cDNA ends (RACE) procedure, using a commercially available kit according to the manufacturer's instructions. Where necessary, multiple rounds of RACE are performed to isolate 5′ and 3′ ends. The full-length cDNA was then recovered by a routine end-to-end PCR using primers specific to the isolated 5′ and 3′ ends. Exemplary sequences are provided in the Sequence Listing.
The invention also entails an agronomic composition comprising a polynucleotide of the invention in conjunction with a suitable carrier and a method for altering a plant's trait using the composition.
Examples of specific polynucleotide and polypeptides of the invention, and equivalog sequences, along with descriptions of the gene families that comprise these polynucleotides and polypeptides, are provided in Table 7, in the Sequence Listing, and in the description provided below.
Homologous Sequences
Sequences homologous, i.e., that share significant sequence identity or similarity, to those provided in the Sequence Listing, derived from Arabidopsis thaliana or from other plants of choice, are also an aspect of the invention. Homologous sequences can be derived from any plant including monocots and dicots and in particular agriculturally important plant species, including but not limited to, grasses such as Miscanthus, switchgrass, and sugarcane-Miscanthus crosses, and crops such as soybean, wheat, corn (maize), potato, cotton, rice, rape, oilseed rape (including canola), sunflower, alfalfa, clover, sugarcane, and turf; or fruits and vegetables, such as banana, blackberry, blueberry, strawberry, and raspberry, cantaloupe, carrot, cauliflower, coffee, cucumber, eggplant, grapes, honeydew, lettuce, mango, melon, onion, papaya, peas, peppers, pineapple, pumpkin, spinach, squash, sweet corn, tobacco, tomato, tomatillo, watermelon, rosaceous fruits (such as apple, peach, pear, cherry and plum) and vegetable brassicas (such as broccoli, cabbage, cauliflower, Brussels sprouts, and kohlrabi). Other crops, including fruits and vegetables, whose phenotype can be changed and which comprise homologous sequences include barley; rye; millet; sorghum; currant; avocado; citrus fruits such as oranges, lemons, grapefruit and tangerines, artichoke, cherries; nuts such as the walnut and peanut; endive; leek; roots such as arrowroot, beet, cassaya, turnip, radish, yam, and sweet potato; and beans. The homologous sequences may also be derived from woody species, such pine, poplar and eucalyptus, or mint or other labiates. In addition, homologous sequences may be derived from plants that are evolutionarily-related to crop plants, but which may not have yet been used as crop plants. Examples include deadly nightshade (Atropa belladona), related to tomato; jimson weed (Datura strommium), related to peyote; and teosinte (Zea species), the latter being related to corn (maize).
Homologous sequences can comprise orthologous or paralogous sequences, described below. Several different methods are known by those of skill in the art for identifying and defining these functionally homologous sequences. General methods for identifying orthologs and paralogs, including phylogenetic methods, sequence similarity and hybridization methods, are described herein; an ortholog or paralog, including equivalogs, may be identified by one or more of the methods described below.
Orthologs and Paralogs
Within a single plant species, gene duplication may cause two copies of a particular gene, giving rise to two or more genes with similar sequence and often similar function known as paralogs. A paralog is therefore a similar gene formed by duplication within the same species. Paralogs typically cluster together or in the same clade (a group of similar genes) when a gene family phylogeny is analyzed using programs such as CLUSTAL (Thompson et al. (1994); Higgins et al. (1996)). Groups of similar genes can also be identified with pair-wise BLAST analysis (Feng and Doolittle (1987)). For example, a clade of very similar MADS domain transcription factors from Arabidopsis all share a common function in flowering time (Ratcliffe et al. (2001)), and a group of very similar AP2 domain transcription factors from Arabidopsis are involved in tolerance of plants to freezing (Gilmour et al. (1998)). Analysis of groups of similar genes with similar function that fall within one clade can yield sub-sequences that are particular to the clade. These sub-sequences, known as consensus sequences, can not only be used to define the sequences within each clade, but define the functions of these genes; genes within a clade may contain paralogous sequences, or orthologous sequences that share the same function (see also, for example, Mount (2001))
Transcription factor genes and other regulatory sequences are conserved across diverse eukaryotic species lines (Goodrich et al. (1993); Lin et al. (1991); Sadowski et al. (1988)). Plants are no exception to this observation; diverse plant species possess transcription factors that have similar sequences and functions. Speciation, the production of new species from a parental species, gives rise to two or more genes with similar sequence and similar function. These genes, termed orthologs, often have an identical function within their host plants and are often interchangeable between species without losing function. Because plants have common ancestors, many genes in any plant species will have a corresponding orthologous gene in another plant species. Once a phylogenic tree for a gene family of one species has been constructed using a program such as CLUSTAL (Thompson et al. (1994); Higgins et al. (1996)) potential orthologous sequences can be placed into the phylogenetic tree and their relationship to genes from the species of interest can be determined. Orthologous sequences can also be identified by a reciprocal BLAST strategy. Once an orthologous sequence has been identified, the function of the ortholog can be deduced from the identified function of the reference sequence.
As described by Eisen (1998), evolutionary information may be used to predict gene function. It is common for groups of genes that are homologous in sequence to have diverse, although usually related, functions. However, in many cases, the identification of homologs is not sufficient to make specific predictions because not all homologs have the same function. Thus, an initial analysis of functional relatedness based on sequence similarity alone may not provide one with a means to determine where similarity ends and functional relatedness begins. Fortunately, it is well known in the art that protein function can be classified using phylogenetic analysis of gene trees combined with the corresponding species. Functional predictions can be greatly improved by focusing on how the genes became similar in sequence (i.e., by evolutionary processes) rather than on the sequence similarity itself (Eisen (1998)). In fact, many specific examples exist in which gene function has been shown to correlate well with gene phylogeny (Eisen (1998)). Thus, “[t]he first step in making functional predictions is the generation of a phylogenetic tree representing the evolutionary history of the gene of interest and its homologs. Such trees are distinct from clusters and other means of characterizing sequence similarity because they are inferred by techniques that help convert patterns of similarity into evolutionary relationships . . . . After the gene tree is inferred, biologically determined functions of the various homologs are overlaid onto the tree. Finally, the structure of the tree and the relative phylogenetic positions of genes of different functions are used to trace the history of functional changes, which is then used to predict functions of [as yet] uncharacterized genes” (Eisen (1998)).
By using a phylogenetic analysis, one skilled in the art would recognize that the ability to deduce similar functions conferred by closely-related polypeptides is predictable. This predictability has been confirmed by our own many studies in which we have found that a wide variety of polypeptides have orthologous or closely-related homologous sequences that function as does the first, closely-related reference sequence. For example, distinct transcription factors, including:
(i) AP2 family Arabidopsis G47 (found in U.S. Pat. No. 7,135,616), a phylogenetically-related sequence from soybean, and two phylogenetically-related homologs from rice all can confer greater tolerance to drought, hyperosmotic stress, or delayed flowering as compared to control plants;
(ii) CAAT family Arabidopsis G481 (found in PCT patent publication WO2004076638), and numerous phylogenetically-related sequences from eudicots and monocots can confer greater tolerance to drought-related stress as compared to control plants;
(iii) Myb-related Arabidopsis G682 (found in U.S. Pat. Nos. 7,223,904 and 7,193,129) and numerous phylogenetically-related sequences from eudicots and monocots can confer greater tolerance to heat, drought-related stress, cold, and salt as compared to control plants;
(iv) WRKY family Arabidopsis G 1274 (found in U.S. Pat. No. 7,196,245) and numerous closely-related sequences from eudicots and monocots have been shown to confer increased water deprivation tolerance, and
(v) AT-hook family soy sequence G3456 (found in US patent publication 20040128712A1) and numerous phylogenetically-related sequences from eudicots and monocots, increased biomass compared to control plants when these sequences are overexpressed in plants.
The polypeptides sequences belong to distinct clades of polypeptides that include members from diverse species. In each case, most or all of the clade member sequences derived from both eudicots and monocots have been shown to confer increased yield or tolerance to one or more abiotic stresses when the sequences were overexpressed. These studies each demonstrate that evolutionarily conserved genes from diverse species are likely to function similarly (i.e., by regulating similar target sequences and controlling the same traits), and that polynucleotides from one species may be transformed into closely-related or distantly-related plant species to confer or improve traits.
A method for identifying or confirming that specific homologous sequences control the same function is by comparison of the transcript profile(s) obtained upon overexpression or knockout of two or more related polypeptides. Since transcript profiles are diagnostic for specific cellular states, one skilled in the art will appreciate that genes that have a highly similar transcript profile (e.g., with greater than 50% regulated transcripts in common, or with greater than 70% regulated transcripts in common, or with greater than 90% regulated transcripts in common) will have highly similar functions. Fowler and Thomashow (2002), have shown that three paralogous AP2 family genes (CBF1, CBF2 and CBF3) are induced upon cold treatment, and each of which can condition improved freezing tolerance, and all have highly similar transcript profiles. Once a polypeptide has been shown to provide a specific function, its transcript profile becomes a diagnostic tool to determine whether paralogs or orthologs have the same function.
At the polypeptide level, the sequences of the invention will typically share at least about 40%, at least about 41%, at least about 42%, at least about 43%, at least about 44%, at least about 45%, at least about 46%, at least about 47%, at least about 48%, at least about 49%, at least about 50%, at least about 51%, at least about 52%, at least about 53%, at least about 54%, at least about 55%, at least about 56%, at least about 57%, at least about 58%, at least about 59%, at least about 60%, at least about 61%, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71%, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% amino acid sequence identity, and have similar functions with the polypeptides listed in Table 7 when these sequences are overexpressed in plants.
Of particular interest is the structure of a transcription factor in the region of its conserved domain(s). Structural analyses may be performed by comparing the structure of the known transcription factor around its conserved domain with those of orthologs and paralogs. Analysis of a number of polypeptides within a transcription factor group or clade, including the functionally or sequentially similar polypeptides provided in the Sequence Listing, may also provide an understanding of structural elements required to regulate transcription within a given family. Polypeptides that are phylogenetically related to the polypeptides of Table 7 may also have conserved domains that share at least 55%, at least about 56%, at least about 57%, at least about 58%, at least about 59%, at least about 60%, at least about 61%, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71%, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100% amino acid sequence identity, and have similar functions in that the polypeptides of the invention may, when overexpressed in plants, confer at least one regulatory activity and altered trait selected from the group consisting of greater brix, greater fruit weight, greater lycopene, greater biomass, more chlorosis, darker green fruit, darker green leaves, deeper red fruit, larger flowers, larger leaflets, larger leaflets, larger and lighter green leaves, rugulose leaves, more anthocyanin, more trichomes, paler white fruit at the green fruit stage, thicker stems, very high vigor, and waxier leaves, as compared to a control plant.
At the nucleotide level, the sequences of the invention will typically share at least about 30% or 40% nucleotide sequence identity, preferably at least about 50%, 55%, at least about 56%, at least about 57%, at least about 58%, at least about 59%, at least about 60%, at least about 61%, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71%, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or about 100%, sequence identity to one or more of the listed full-length sequences, or to a listed sequence but excluding or outside of the region(s) encoding a known consensus sequence or consensus DNA-binding site, or outside of the region(s) encoding one or all conserved domains. The degeneracy of the genetic code enables major variations in the nucleotide sequence of a polynucleotide while maintaining the amino acid sequence of the encoded protein.
Methods for Determining Sequence Relationships
A variety of methods for determining sequence relationships can be used, including manual alignment and computer assisted sequence alignment and analysis. This later approach is a preferred approach in the present invention, due to the increased throughput afforded by computer assisted methods. As noted below, a variety of computer programs for performing sequence alignment are available, or can be produced by one of skill.
Percent identity can be determined electronically, e.g., by using the MEGALIGN program (DNASTAR, Inc. Madison, Wis.). The MEGALIGN program can create alignments between two or more sequences according to different methods, for example, the clustal method (see, for example, Higgins and Sharp (1988). The clustal algorithm groups sequences into clusters by examining the distances between all pairs. The clusters are aligned pairwise and then in groups. Other alignment algorithms or programs may be used, including FASTA, BLAST, or ENTREZ, FASTA and BLAST, and which may be used to calculate percent similarity. These are available as a part of the GCG sequence analysis package (University of Wisconsin, Madison, Wis.), and can be used with or without default settings. ENTREZ is available through the National Center for Biotechnology Information. In one embodiment, the percent identity of two sequences can be determined by the GCG program with a gap weight of 1, e.g., each amino acid gap is weighted as if it were a single amino acid or nucleotide mismatch between the two sequences (see U.S. Pat. No. 6,262,333).
The percentage similarity between two polypeptide sequences, e.g., sequence A and sequence B, is calculated by dividing the length of sequence A, minus the number of gap residues in sequence A, minus the number of gap residues in sequence B, into the sum of the residue matches between sequence A and sequence B, times one hundred. Gaps of low or of no similarity between the two amino acid sequences are not included in determining percentage similarity. Percent identity between polynucleotide sequences can also be counted or calculated by other methods known in the art, e.g., manually, using the algorithm provided above, or by the Jotun Hein method (see, for example, Hein (1990)). Identity between sequences can also be determined by other methods known in the art, e.g., by varying hybridization conditions (see US Patent Application No. 20010010913).
One example algorithm that is suitable for determining percent sequence identity and sequence similarity is the BLAST algorithm, which is described in Altschul et al. (1990). Software for performing BLAST analyses is publicly available, e.g., through the National Library of Medicine's National Center for Biotechnology Information (ncbi.nlm.nih; see at world wide web (www) National Institutes of Health US government (gov) website). This algorithm involves first identifying high scoring sequence pairs (HSPs) by identifying short words of length W in the query sequence, which either match or satisfy some positive-valued threshold score T when aligned with a word of the same length in a database sequence. T is referred to as the neighborhood word score threshold (Altschul (1993); Altschul et al. (1990)). These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are then extended in both directions along each sequence for as far as the cumulative alignment score can be increased. Cumulative scores are calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T, and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, an expectation (E) of 10, a cutoff of 100, M=5, N=−4, and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a wordlength (W) of 3, an expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff and Henikoff (1992)). Unless otherwise indicated, “sequence identity” here refers to the % sequence identity generated from a tblastx using the NCBI version of the algorithm at the default settings using gapped alignments with the filter “off” (see, for example, NIH NLM NCBI website at ncbi.nlm.nih).
In addition to calculating percent sequence identity, the BLAST algorithm also performs a statistical analysis of the similarity between two sequences (see, e.g. Karlin and Altschul (1993)). One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance. For example, a nucleic acid is considered similar to a reference sequence (and, therefore, in this context, homologous) if the smallest sum probability in a comparison of the test nucleic acid to the reference nucleic acid is less than about 0.1, or less than about 0.01, and or even less than about 0.001. An additional example of a useful sequence alignment algorithm is PILEUP. PILEUP creates a multiple sequence alignment from a group of related sequences using progressive, pairwise alignments. The program can align, e.g., up to 300 sequences of a maximum length of 5,000 letters.
Sequence alignment program, include, for example, the Wisconsin Package Version 10.0, such as BLAST, FASTA, PILEUP, FINDPATTERNS or the like (GCG, Madison, Wis.). Public sequence databases such as GenBank, EMBL, Swiss-Prot and PIR or private sequence databases such as PHYTOSEQ sequence database (Incyte Genomics, Wilmington, Del.) can be searched.
Alignment of sequences for comparison can be conducted by the local homology algorithm of Smith and Waterman (1981), by the homology alignment algorithm of Needleman and Wunsch (1970, by the search for similarity method of Pearson and Lipman (1988), or by computerized implementations of these algorithms. After alignment, sequence comparisons between two (or more) polynucleotides or polypeptides are typically performed by comparing sequences of the two sequences over a comparison window to identify and compare local regions of sequence similarity. The comparison window can be a segment of at least about 20 contiguous positions, usually about 50 to about 200, more usually about 100 to about 150 contiguous positions. A description of the method is provided in Ausubel (2000).
Other techniques for alignment are described by Doolittle (1996). Preferably, an alignment program that permits gaps in the sequence is utilized to align the sequences. The Smith-Waterman is one type of algorithm that permits gaps in sequence alignments (see Shpaer (1997). Also, the GAP program using the Needleman and Wunsch alignment method can be utilized to align sequences. An alternative search strategy uses MPSRCH software, which runs on a MASPAR computer. MPSRCH uses a Smith-Waterman algorithm to score sequences on a massively parallel computer. This approach improves ability to pick up distantly related matches, and is especially tolerant of small gaps and nucleotide sequence errors. Nucleic acid-encoded amino acid sequences can be used to search both protein and DNA databases.
In addition, one or more polynucleotide sequences or one or more polypeptides encoded by the polynucleotide sequences may be used to search against a BLOCKS (Bairoch et al. (1997)), PFAM, and other databases which contain previously identified and annotated motifs, sequences and gene functions. Methods that search for primary sequence patterns with secondary structure gap penalties (Smith et al. (1992)) as well as algorithms such as Basic Local Alignment Search Tool (BLAST; Altschul (1990); Altschul et al. (1993)), BLOCKS (Henikoff and Henikoff (1991)), Hidden Markov Models (HMM; Eddy (1996); Sonnhammer et al. (1997)), and the like, can be used to manipulate and analyze polynucleotide and polypeptide sequences encoded by polynucleotides. These databases, algorithms and other methods are well known in the art and are described in Ausubel et al. (1997), and in Meyers (1995).
Furthermore, methods using manual alignment of sequences similar or homologous to one or more polynucleotide sequences or one or more polypeptides encoded by the polynucleotide sequences may be used to identify regions of similarity and B-box zinc finger domains. Such manual methods are well-known of those of skill in the art and can include, for example, comparisons of tertiary structure between a polypeptide sequence encoded by a polynucleotide that comprises a known function and a polypeptide sequence encoded by a polynucleotide sequence that has a function not yet determined. Such examples of tertiary structure may comprise predicted alpha helices, beta-sheets, amphipathic helices, leucine zipper motifs, zinc finger motifs, proline-rich regions, cysteine repeat motifs, and the like.
Orthologs and paralogs of presently disclosed polypeptides may be cloned using compositions provided by the present invention according to methods well known in the art. cDNAs can be cloned using mRNA from a plant cell or tissue that expresses one of the present sequences. Appropriate mRNA sources may be identified by interrogating Northern blots with probes designed from the present sequences, after which a library is prepared from the mRNA obtained from a positive cell or tissue. Polypeptide-encoding cDNA is then isolated using, for example, PCR, using primers designed from a presently disclosed gene sequence, or by probing with a partial or complete cDNA or with one or more sets of degenerate probes based on the disclosed sequences. The cDNA library may be used to transform plant cells. Expression of the cDNAs of interest is detected using, for example, microarrays, Northern blots, quantitative PCR, or any other technique for monitoring changes in expression. Genomic clones may be isolated using similar techniques to those.
Examples of orthologs of the Arabidopsis polypeptide sequences and their functionally similar orthologs are listed in Table 7 and the Sequence Listing. In addition to the sequences in Table 7 and the Sequence Listing, the invention encompasses isolated nucleotide sequences that are phylogenetically and structurally similar to sequences listed in the Sequence Listing) and can function in a plant by increasing yield and/or and abiotic stress tolerance when ectopically expressed in a plant.
Since a significant number of these sequences are phylogenetically and sequentially related to each other and have been shown to increase yield from a plant and/or abiotic stress tolerance, one skilled in the art would predict that other similar, phylogenetically related sequences falling within the present clades of polypeptides would also perform similar functions when ectopically expressed.
Identifying Polynucleotides or Nucleic Acids by Hybridization
Polynucleotides homologous to the sequences illustrated in the Sequence Listing and tables can be identified, e.g., by hybridization to each other under stringent or under highly stringent conditions. Single stranded polynucleotides hybridize when they associate based on a variety of well characterized physical-chemical forces, such as hydrogen bonding, solvent exclusion, base stacking and the like. The stringency of a hybridization reflects the degree of sequence identity of the nucleic acids involved, such that the higher the stringency, the more similar are the two polynucleotide strands. Stringency is influenced by a variety of factors, including temperature, salt concentration and composition, organic and non-organic additives, solvents, etc. present in both the hybridization and wash solutions and incubations (and number thereof), as described in more detail in the references cited below (e.g., Sambrook et al. (1989); Berger and Kimmel (1987); and Anderson and Young (1985)).
Encompassed by the invention are polynucleotide sequences that are capable of hybridizing to the claimed polynucleotide sequences, including any of the transcription factor polynucleotides within the Sequence Listing, and fragments thereof under various conditions of stringency (see, for example, Wahl and Berger (1987); and Kimmel (1987)). In addition to the nucleotide sequences in the Sequence Listing, full length cDNA, orthologs, and paralogs of the present nucleotide sequences may be identified and isolated using well-known methods. The cDNA libraries, orthologs, and paralogs of the present nucleotide sequences may be screened using hybridization methods to determine their utility as hybridization target or amplification probes.
With regard to hybridization, conditions that are highly stringent, and means for achieving them, are well known in the art. See, for example, Sambrook et al. (1989); Berger and Kimmel (1987) pp. 467-469; and Anderson and Young (1985).
Hybridization experiments are generally conducted in a buffer of pH between 6.8 to 7.4, although the rate of hybridization is nearly independent of pH at ionic strengths likely to be used in the hybridization buffer (Anderson and Young (1985)). In addition, one or more of the following may be used to reduce non-specific hybridization: sonicated salmon sperm DNA or another non-complementary DNA, bovine serum albumin, sodium pyrophosphate, sodium dodecylsulfate (SDS), polyvinyl-pyrrolidone, ficoll and Denhardt's solution. Dextran sulfate and polyethylene glycol 6000 act to exclude DNA from solution, thus raising the effective probe DNA concentration and the hybridization signal within a given unit of time. In some instances, conditions of even greater stringency may be desirable or required to reduce non-specific and/or background hybridization. These conditions may be created with the use of higher temperature, lower ionic strength and higher concentration of a denaturing agent such as formamide.
Stringency conditions can be adjusted to screen for moderately similar fragments such as homologous sequences from distantly related organisms, or to highly similar fragments such as genes that duplicate functional enzymes from closely related organisms. The stringency can be adjusted either during the hybridization step or in the post-hybridization washes. Salt concentration, formamide concentration, hybridization temperature and probe lengths are variables that can be used to alter stringency (as described by the formula above). As a general guidelines high stringency is typically performed at Tm−5° C. to Tm−20° C., moderate stringency at Tm−20° C. to Tm−35° C. and low stringency at Tm−35° C. to Tm−50° C. for duplex >150 base pairs. Hybridization may be performed at low to moderate stringency (25-50° C. below Tm), followed by post-hybridization washes at increasing stringencies. Maximum rates of hybridization in solution are determined empirically to occur at Tm−25° C. for DNA-DNA duplex and Tm−15° C. for RNA-DNA duplex. Optionally, the degree of dissociation may be assessed after each wash step to determine the need for subsequent, higher stringency wash steps.
High stringency conditions may be used to select for nucleic acid sequences with high degrees of identity to the disclosed sequences. An example of stringent hybridization conditions obtained in a filter-based method such as a Southern or northern blot for hybridization of complementary nucleic acids that have more than 100 complementary residues is about 5° C. to 20° C. lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength and pH.
Hybridization and wash conditions that may be used to bind and remove polynucleotides with less than the desired homology to the nucleic acid sequences or their complements that encode the present transcription factors include, for example:
6×SSC and 1% SDS at 65° C.;
50% formamide, 4×SSC at 42° C.; or
0.5×SSC to 2.0×SSC, 0.1% SDS at 50° C. to 65° C.; or
0.1×SSC to 2×SSC, 0.1% SDS at 50° C.-65° C.;
with a first wash step of, for example, 10 minutes at about 42° C. with about 20% (v/v) formamide in 0.1×SSC, and with, for example, a subsequent wash step with 0.2×SSC and 0.1% SDS at 65° C. for 10, 20 or 30 minutes. An example of a polynucleotide sequence of the invention would thus include a polynucleotide sequence that hybridizes to the complement of any of SEQ ID NO: 2n−1, where n=1 to 1317, or SEQ ID NO: 4176-4823, or SEQ ID NO: 4839 to 10667 under these stringent conditions. Useful variations on these conditions will be readily apparent to those skilled in the art.
A person of skill in the art would not expect substantial variation among polynucleotide species encompassed within the scope of the present invention because the highly stringent conditions set forth in the above formulae yield structurally similar polynucleotides.
For identification of less closely related homologs, wash steps may be performed at a lower temperature, e.g., 50° C. An example of a low stringency wash step employs a solution and conditions of at least 25° C. in 30 mM NaCl, 3 mM trisodium citrate, and 0.1% SDS over 30 min. Greater stringency may be obtained at 42° C. in 15 mM NaCl, with 1.5 mM trisodium citrate, and 0.1% SDS over 30 min. Wash procedures will generally employ at least two final wash steps. Additional variations on these conditions will be readily apparent to those skilled in the art (see, for example, U.S. patent application No. 20010010913).
If desired, one may employ wash steps of even greater stringency, including conditions of 65° C.-68° C. in a solution of 15 mM NaCl, 1.5 mM trisodium citrate, and 0.1% SDS, or about 0.2×SSC, 0.1% SDS at 65° C. and washing twice, each wash step of 10, 20 or 30 min in duration, or about 0.1×SSC, 0.1% SDS at 65° C. and washing twice for 10, 20 or 30 min. Hybridization stringency may be increased further by using the same conditions as in the hybridization steps, with the wash temperature raised about 3° C. to about 5° C., and stringency may be increased even further by using the same conditions except the wash temperature is raised about 6° C. to about 9° C.
Stringency conditions can be selected such that an oligonucleotide that is perfectly complementary to the coding oligonucleotide hybridizes to the coding oligonucleotide with at least about a 5-10× higher signal to noise ratio than the ratio for hybridization of the perfectly complementary oligonucleotide to a nucleic acid encoding a transcription factor known as of the filing date of the application. It may be desirable to select conditions for a particular assay such that a higher signal to noise ratio, that is, about 15× or more, is obtained. Accordingly, a subject nucleic acid will hybridize to a unique coding oligonucleotide with at least a 2× or greater signal to noise ratio as compared to hybridization of the coding oligonucleotide to a nucleic acid encoding known polypeptide. The particular signal will depend on the label used in the relevant assay, e.g., a fluorescent label, a calorimetric label, a radioactive label, or the like. Labeled hybridization or PCR probes for detecting related polynucleotide sequences may be produced by oligolabeling, nick translation, end-labeling, or PCR amplification using a labeled nucleotide.
Encompassed by the invention are polynucleotide sequences that are capable of hybridizing to the complements of the listed polynucleotide sequences, for example, to SEQ ID NO: 2n−1, where n=1 to 1317 or SEQ ID NO: 4176-4823, or SEQ ID NO: 4839-10667, and fragments thereof under various conditions of stringency (see, e.g., Wahl and Berger (1987); Kimmel (1987)). Estimates of homology are provided by either DNA-DNA or DNA-RNA hybridization under conditions of stringency as is well understood by those skilled in the art (Hames and Higgins (1985). Stringency conditions can be adjusted to screen for moderately similar fragments, such as homologous sequences from distantly related organisms, to highly similar fragments, such as genes that duplicate functional enzymes from closely related organisms. Post-hybridization washes determine stringency conditions.
Identifying Polynucleotides or Nucleic Acids with Expression Libraries
In addition to hybridization methods, transcription factor homolog polypeptides can be obtained by screening an expression library using antibodies specific for one or more transcription factors. With the provision herein of the disclosed transcription factor, and transcription factor homolog nucleic acid sequences, the encoded polypeptide(s) can be expressed and purified in a heterologous expression system (e.g., E. coli) and used to raise antibodies (monoclonal or polyclonal) specific for the polypeptide(s) in question. Antibodies can also be raised against synthetic peptides derived from transcription factor, or transcription factor homolog, amino acid sequences. Methods of raising antibodies are well known in the art and are described in Harlow and Lane (1988). Such antibodies can then be used to screen an expression library produced from the plant from which it is desired to clone additional transcription factor homologs, using the methods described above. The selected cDNAs can be confirmed by sequencing and enzymatic activity.
Producing Polypeptides
The polynucleotides of the invention include sequences that encode transcription factors and transcription factor homolog polypeptides and sequences complementary thereto, as well as unique fragments of coding sequence, or sequence complementary thereto. Such polynucleotides can be, for example, DNA or RNA, the latter including mRNA, cRNA, synthetic RNA, genomic DNA, cDNA synthetic DNA, oligonucleotides, etc. The polynucleotides are either double-stranded or single-stranded, and include either, or both sense (i.e., coding) sequences and antisense (i.e., non-coding, complementary) sequences. The polynucleotides include the coding sequence of a transcription factor, or transcription factor homolog polypeptide, in isolation, in combination with additional coding sequences (e.g., a purification tag, a localization signal, as a fusion-protein, as a pre-protein, or the like), in combination with non-coding sequences (for example, introns or inteins, regulatory elements such as promoters, enhancers, terminators, and the like), and/or in a vector or host environment in which the polynucleotide encoding a transcription factor or transcription factor homolog polypeptide is an endogenous or exogenous gene.
A variety of methods exist for producing the polynucleotides of the invention. Procedures for identifying and isolating DNA clones are well known to those of skill in the art, and are described in, for example, Berger and Kimmel (1987); Sambrook et al. (1989) and Ausubel et al. (1998; supplemented through 2000).
Alternatively, polynucleotides of the invention, can be produced by a variety of in vitro amplification methods adapted to the present invention by appropriate selection of specific or degenerate primers. Examples of protocols sufficient to direct persons of skill through in vitro amplification methods, including the polymerase chain reaction (PCR) the ligase chain reaction (LCR), Qβ-replicase amplification and other RNA polymerase mediated techniques (for example, NASBA), e.g., for the production of the homologous nucleic acids of the invention are found in Berger and Kimmel (1987), Sambrook (1989), and Ausubel (2000), as well as Mullis et al. (1990). Improved methods for cloning in vitro amplified nucleic acids are described in U.S. Pat. No. 5,426,039. Improved methods for amplifying large nucleic acids by PCR are summarized in Cheng et al. (1994) and the references cited therein, in which PCR amplicons of up to 40 kb are generated. One of skill will appreciate that essentially any RNA can be converted into a double stranded DNA suitable for restriction digestion, PCR expansion and sequencing using reverse transcriptase and a polymerase. See, e.g., Ausubel (2000), Sambrook (1989) and Berger and Kimmel (1987).
Alternatively, polynucleotides and oligonucleotides of the invention can be assembled from fragments produced by solid-phase synthesis methods. Typically, fragments of up to approximately 100 bases are individually synthesized and then enzymatically or chemically ligated to produce a desired sequence, e.g., a polynucleotide encoding all or part of a transcription factor. For example, chemical synthesis using the phosphoramidite method is described, e.g., by Beaucage et al. (1981) and Matthes et al. (1984). According to such methods, oligonucleotides are synthesized, purified, annealed to their complementary strand, ligated and then optionally cloned into suitable vectors. And if so desired, the polynucleotides and polypeptides of the invention can be custom ordered from any of a number of commercial suppliers.
Sequence Variations
It will readily be appreciated by those of skill in the art, that any of a variety of polynucleotide sequences are capable of encoding the transcription factors and transcription factor homolog polypeptides of the invention. Due to the degeneracy of the genetic code, many different polynucleotides can encode identical and/or substantially similar polypeptides in addition to those sequences illustrated in the Sequence Listing. Nucleic acids having a sequence that differs from the sequences shown in the Sequence Listing, or complementary sequences, that encode functionally equivalent peptides (i.e., peptides having some degree of equivalent or similar biological activity) but differ in sequence from the sequence shown in the Sequence Listing due to degeneracy in the genetic code, are also within the scope of the invention.
Altered polynucleotide sequences encoding polypeptides include those sequences with deletions, insertions, or substitutions of different nucleotides, resulting in a polynucleotide encoding a polypeptide with at least one functional characteristic of the instant polypeptides. Included within this definition are polymorphisms that may or may not be readily detectable using a particular oligonucleotide probe of the polynucleotide encoding the instant polypeptides, and improper or unexpected hybridization to allelic variants, with a locus other than the normal chromosomal locus for the polynucleotide sequence encoding the instant polypeptides.
Allelic variant refers to any of two or more alternative forms of a gene occupying the same chromosomal locus. Allelic variation arises naturally through mutation, and may result in phenotypic polymorphism within populations. Gene mutations can be silent (i.e., no change in the encoded polypeptide) or may encode polypeptides having altered amino acid sequence. The term allelic variant is also used herein to denote a protein encoded by an allelic variant of a gene. Splice variant refers to alternative forms of RNA transcribed from a gene. Splice variation arises naturally through use of alternative splicing sites within a transcribed RNA molecule, or less commonly between separately transcribed RNA molecules, and may result in several mRNAs transcribed from the same gene. Splice variants may encode polypeptides having altered amino acid sequence. The term splice variant is also used herein to denote a protein encoded by a splice variant of an mRNA transcribed from a gene.
Those skilled in the art would recognize that, for example, G1421, SEQ ID NO: 180, represents a single transcription factor; allelic variation and alternative splicing may be expected to occur. Allelic variants of SEQ ID NO: 179 can be cloned by probing cDNA or genomic libraries from different individual organisms according to standard procedures. Allelic variants of the DNA sequence shown in SEQ ID NO: 179, including those containing silent mutations and those in which mutations result in amino acid sequence changes, are within the scope of the present invention, as are proteins which are allelic variants of SEQ ID NO: 180. cDNAs generated from alternatively spliced mRNAs, which retain the properties of the transcription factor are included within the scope of the present invention, as are polypeptides encoded by such cDNAs and mRNAs. Allelic variants and splice variants of these sequences can be cloned by probing cDNA or genomic libraries from different individual organisms or tissues according to standard procedures known in the art (see U.S. Pat. No. 6,388,064).
Thus, in addition to the sequences set forth in the Sequence Listing, the invention also encompasses related nucleic acid molecules that include allelic or splice variants of the sequences of the invention, for example, SEQ ID NO: 2n−1, where n=1 to 1317, and include sequences that are complementary to any of the above nucleotide sequences. Related nucleic acid molecules also include nucleotide sequences encoding a polypeptide comprising a substitution, modification, addition and/or deletion of one or more amino acid residues compared to the polypeptide sequences of the invention, for example, SEQ ID NO: 2n, where n=1 to 1317, or sequences comprising any of SEQ ID NOs: 2365-4175 or polypeptides encoded by any of SEQ ID NOs: 4839-10667. Such related polypeptides may comprise, for example, additions and/or deletions of one or more N-linked or O-linked glycosylation sites, or an addition and/or a deletion of one or more cysteine residues.
Sequence alterations that do not change the amino acid sequence encoded by the polynucleotide are termed “silent” variations. With the exception of the codons ATG and TGG, encoding methionine and tryptophan, respectively, any of the possible codons for the same amino acid can be substituted by a variety of techniques, e.g., site-directed mutagenesis, available in the art. Accordingly, any and all such variations of a sequence selected from the above table are a feature of the invention.
In addition to silent variations, other conservative variations that alter one, or a few amino acid residues in the encoded polypeptide, can be made without altering the function of the polypeptide, these conservative variants are, likewise, a feature of the invention.
For example, substitutions, deletions and insertions introduced into the sequences provided in the Sequence Listing, are also envisioned by the invention. Such sequence modifications can be engineered into a sequence by site-directed mutagenesis (Wu (1993) or the other methods noted below. Amino acid substitutions are typically of single residues; insertions usually will be on the order of about from 1 to 10 amino acid residues; and deletions will range about from 1 to 30 residues. In preferred embodiments, deletions or insertions are made in adjacent pairs, e.g., a deletion of two residues or insertion of two residues. Substitutions, deletions, insertions or any combination thereof can be combined to arrive at a sequence. The mutations that are made in the polynucleotide encoding the transcription factor should not place the sequence out of reading frame and should not create complementary regions that could produce secondary mRNA structure. Preferably, the polypeptide encoded by the DNA performs the desired function.
Conservative substitutions are those in which at least one residue in the amino acid sequence has been removed and a different residue inserted in its place. Such substitutions generally are made in accordance with the Table 1 when it is desired to maintain the activity of the protein. Table 1 shows amino acids which can be substituted for an amino acid in a protein and which are typically regarded as conservative substitutions.







TABLE 1







Possible conservative amino acid substitutions










Amino Acid




Residue
Conservative substitutions






Ala
Ser



Arg
Lys



Asn
Gln; His



Asp
Glu



Gln
Asn



Cys
Ser



Glu
Asp



Gly
Pro



His
Asn; Gln



Ile
Leu, Val



Leu
Ile; Val



Lys
Arg; Gln



Met
Leu; Ile



Phe
Met; Leu; Tyr



Ser
Thr; Gly



Thr
Ser; Val



Trp
Tyr



Tyr
Trp; Phe



Val
Ile; Leu









The sequences provided in the Sequence Listing or in Table 7 have a novel activity, being plant transcription sequences that may be used to regulate expression of proteins. Although all conservative amino acid substitutions (for example, one basic amino acid substituted for another basic amino acid) in the protein of the invention will not necessarily result in a protein that has transcriptional regulatory activity, it is expected that many of these conservative mutations would result in a protein having transcriptional regulatory activity. Most mutations, conservative or non-conservative, made to a protein of the invention, but outside of a domain critical to the activity of the protein (for example, conserved domains of SEQ ID NOs: 2365-4175) and outside of other domains essential for protein activity, will not affect the activity of the protein to any great extent.
Similar substitutions are those in which at least one residue in the amino acid sequence has been removed and a different residue inserted in its place. Substitutions that are less conservative can be selected by picking residues that differ more significantly in their effect on maintaining (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation, (b) the charge or hydrophobicity of the molecule at the target site, or (c) the bulk of the side chain. The substitutions which in general are expected to produce the greatest changes in protein properties will be those in which (a) a hydrophilic residue, e.g., seryl or threonyl, is substituted for (or by) a hydrophobic residue, e.g., leucyl, isoleucyl, phenylalanyl, valyl or alanyl; (b) a cysteine or proline is substituted for (or by) any other residue; (c) a residue having an electropositive side chain, e.g., lysyl, arginyl, or histidyl, is substituted for (or by) an electronegative residue, e.g., glutamyl or aspartyl; or (d) a residue having a bulky side chain, e.g., phenylalanine, is substituted for (or by) one not having a side chain, e.g., glycine.
Further Modifying Sequences of the Invention—Mutation/Forced Evolution
In addition to generating silent or conservative substitutions as noted, above, the present invention optionally includes methods of modifying the sequences of the Sequence Listing. In the methods, nucleic acid or protein modification methods are used to alter the given sequences to produce new sequences and/or to chemically or enzymatically modify given sequences to change the properties of the nucleic acids or proteins.
Thus, in one embodiment, given nucleic acid sequences are modified, e.g., according to standard mutagenesis or artificial evolution methods to produce modified sequences. The modified sequences may be created using purified natural polynucleotides isolated from any organism or may be synthesized from purified compositions and chemicals using chemical means well know to those of skill in the art. For example, Ausubel (2000), provides additional details on mutagenesis methods. Artificial forced evolution methods are described, for example, by Stemmer (1994a), Stemmer (1994b), and U.S. Pat. Nos. 5,811,238, 5,837,500, and 6,242,568. Methods for engineering synthetic transcription factors and other polypeptides are described, for example, by Zhang et al. (2000), Liu et al. (2001), and Isalan et al. (2001). Many other mutation and evolution methods are also available and expected to be within the skill of the practitioner.
Similarly, chemical or enzymatic alteration of expressed nucleic acids and polypeptides can be performed by standard methods. For example, sequence can be modified by addition of lipids, sugars, peptides, organic or inorganic compounds, by the inclusion of modified nucleotides or amino acids, or the like. For example, protein modification techniques are illustrated in Ausubel (2000). Further details on chemical and enzymatic modifications can be found herein. These modification methods can be used to modify any given sequence, or to modify any sequence produced by the various mutation and artificial evolution modification methods noted herein.
Accordingly, the invention provides for modification of any given nucleic acid by mutation, evolution, chemical or enzymatic modification, or other available methods, as well as for the products produced by practicing such methods, e.g., using the sequences herein as a starting substrate for the various modification approaches.
For example, optimized coding sequence containing codons preferred by a particular prokaryotic or eukaryotic host can be used e.g., to increase the rate of translation or to produce recombinant RNA transcripts having desirable properties, such as a longer half-life, as compared with transcripts produced using a non-optimized sequence. Translation stop codons can also be modified to reflect host preference. For example, preferred stop codons for Saccharomyces cerevisiae and mammals are TAA and TGA, respectively. The preferred stop codon for monocotyledonous plants is TGA, whereas insects and E. coli prefer to use TAA as the stop codon.
The polynucleotide sequences of the present invention can also be engineered in order to alter a coding sequence for a variety of reasons, including but not limited to, alterations which modify the sequence to facilitate cloning, processing and/or expression of the gene product. For example, alterations are optionally introduced using techniques which are well known in the art, e.g., site-directed mutagenesis, to insert new restriction sites, to alter glycosylation patterns, to change codon preference, to introduce splice sites, etc.
Furthermore, a fragment or domain derived from any of the polypeptides of the invention can be combined with domains derived from other transcription factors or synthetic domains to modify the biological activity of a transcription factor. For instance, a DNA-binding domain derived from a transcription factor of the invention can be combined with the activation domain of another transcription factor or with a synthetic activation domain. A transcription activation domain assists in initiating transcription from a DNA-binding site. Examples include the transcription activation region of VP16 or GAL4 (Moore et al. (1998); Aoyama et al. (1995)), peptides derived from bacterial sequences (Ma and Ptashne (1987)) and synthetic peptides (Giniger and Ptashne (1987)).
Expression and Modification of Polypeptides
Typically, polynucleotide sequences of the invention are incorporated into recombinant DNA (or RNA) molecules that direct expression of polypeptides of the invention in appropriate host cells, transgenic plants, in vitro translation systems, or the like. Due to the inherent degeneracy of the genetic code, nucleic acid sequences which encode substantially the same or a functionally equivalent amino acid sequence can be substituted for any listed sequence to provide for cloning and expressing the relevant homolog.
The transgenic plants of the present invention comprising recombinant polynucleotide sequences are generally derived from parental plants, which may themselves be non-transformed (or non-transgenic) plants. These transgenic plants may either have a transcription factor gene “knocked out” (for example, with a genomic insertion by homologous recombination, an antisense or ribozyme construct) or expressed to a normal or wild-type extent. However, overexpressing transgenic “progeny” plants will exhibit greater mRNA levels, wherein the mRNA encodes a transcription factor, that is, a DNA-binding protein that is capable of binding to a DNA regulatory sequence and inducing transcription, and preferably, expression of a plant trait gene, such as a gene that improves plant and/or fruit quality and/or yield. Preferably, the mRNA expression level will be at least three-fold greater than that of the parental plant, or more preferably at least ten-fold greater mRNA levels compared to said parental plant, and most preferably at least fifty-fold greater compared to said parental plant.
Modified Amino Acid Residues
Polypeptides of the invention may contain one or more modified amino acid residues. The presence of modified amino acids may be advantageous in, for example, increasing polypeptide half-life, reducing polypeptide antigenicity or toxicity, increasing polypeptide storage stability, or the like. Amino acid residue(s) are modified, for example, co-translationally or post-translationally during recombinant production or modified by synthetic or chemical means.
Non-limiting examples of a modified amino acid residue include incorporation or other use of acetylated amino acids, glycosylated amino acids, sulfated amino acids, prenylated (e.g., farnesylated, geranylgeranylated) amino acids, PEG modified (e.g., “PEGylated”) amino acids, biotinylated amino acids, carboxylated amino acids, phosphorylated amino acids, etc. References adequate to guide one of skill in the modification of amino acid residues are replete throughout the literature.
The modified amino acid residues may prevent or increase affinity of the polypeptide for another molecule, including, but not limited to, polynucleotide, proteins, carbohydrates, lipids and lipid derivatives, and other organic or synthetic compounds.
Identification of Additional Protein Factors
A transcription factor provided by the present invention can also be used to identify additional endogenous or exogenous molecules that can affect a phenotype or trait of interest. Such molecules include endogenous molecules that are acted upon either at a transcriptional level by a transcription factor of the invention to modify a phenotype as desired. For example, the transcription factors can be employed to identify one or more downstream genes that are subject to a regulatory effect of the transcription factor. In one approach, a transcription factor or transcription factor homolog of the invention is expressed in a host cell, e.g., a transgenic plant cell, tissue or explant, and expression products, either RNA or protein, of likely or random targets are monitored, e.g., by hybridization to a microarray of nucleic acid probes corresponding to genes expressed in a tissue or cell type of interest, by two-dimensional gel electrophoresis of protein products, or by any other method known in the art for assessing expression of gene products at the level of RNA or protein. Alternatively, a transcription factor of the invention can be used to identify promoter sequences (such as binding sites on DNA sequences) involved in the regulation of a downstream target. After identifying a promoter sequence, interactions between the transcription factor and the promoter sequence can be modified by changing specific nucleotides in the promoter sequence or specific amino acids in the transcription factor that interact with the promoter sequence to alter a plant trait. Typically, transcription factor DNA-binding sites are identified by gel shift assays. After identifying the promoter regions, the promoter region sequences can be employed in double-stranded DNA arrays to identify molecules that affect the interactions of the transcription factors with their promoters (Bulyk et al. (1999)).
The identified transcription factors are also useful to identify proteins that modify the activity of the transcription factor. Such modification can occur by covalent modification, such as by phosphorylation, or by protein-protein (homo or -heteropolymer) interactions. Any method suitable for detecting protein-protein interactions can be employed. Among the methods that can be employed are co-immunoprecipitation, cross-linking and co-purification through gradients or chromatographic columns, and the two-hybrid yeast system.
The two-hybrid system detects protein interactions in vivo and is described in Chien et al. (1991) and is commercially available from Clontech (Palo Alto, Calif.). In such a system, plasmids are constructed that encode two hybrid proteins: one consists of the DNA-binding domain of a transcription activator protein fused to the transcription factor polypeptide and the other consists of the transcription activator protein's activation domain fused to an unknown protein that is encoded by a cDNA that has been recombined into the plasmid as part of a cDNA library. The DNA-binding domain fusion plasmid and the cDNA library are transformed into a strain of the yeast Saccharomyces cerevisiae that contains a reporter gene (e.g., lacZ) whose regulatory region contains the transcription activator's binding site. Either hybrid protein alone cannot activate transcription of the reporter gene. Interaction of the two hybrid proteins reconstitutes the functional activator protein and results in expression of the reporter gene, which is detected by an assay for the reporter gene product. Then, the library plasmids responsible for reporter gene expression are isolated and sequenced to identify the proteins encoded by the library plasmids. After identifying proteins that interact with the transcription factors, assays for compounds that interfere with the transcription factor protein-protein interactions can be preformed.
Subsequences
Also contemplated are uses of polynucleotides, also referred to herein as oligonucleotides, typically having at least 12 bases, preferably at least 50 bases, which hybridize under stringent conditions to a polynucleotide sequence described above. The polynucleotides may be used as probes, primers, sense and antisense agents, and the like, according to methods as noted above.
Subsequences of the polynucleotides of the invention, including polynucleotide fragments and oligonucleotides are useful as nucleic acid probes and primers. An oligonucleotide suitable for use as a probe or primer is at least about 15 nucleotides in length, more often at least about 18 nucleotides, often at least about 21 nucleotides, frequently at least about 30 nucleotides, or about 40 nucleotides, or more in length. A nucleic acid probe is useful in hybridization protocols, e.g., to identify additional polypeptide homologs of the invention, including protocols for microarray experiments. Primers can be annealed to a complementary target DNA strand by nucleic acid hybridization to form a hybrid between the primer and the target DNA strand, and then extended along the target DNA strand by a DNA polymerase enzyme. Primer pairs can be used for amplification of a nucleic acid sequence, e.g., by the polymerase chain reaction (PCR) or other nucleic-acid amplification methods. See Sambrook (1989), and Ausubel (2000).
In addition, the invention includes an isolated or recombinant polypeptide including a subsequence of at least about 15 contiguous amino acids encoded by the recombinant or isolated polynucleotides of the invention. For example, such polypeptides, or domains or fragments thereof, can be used as immunogens, e.g., to produce antibodies specific for the polypeptide sequence, or as probes for detecting a sequence of interest. A subsequence can range in size from about 15 amino acids in length up to and including the full length of the polypeptide.
To be encompassed by the present invention, an expressed polypeptide which comprises such a polypeptide subsequence performs at least one biological function of the intact polypeptide in substantially the same manner, or to a similar extent, as does the intact polypeptide. For example, a polypeptide fragment can comprise a recognizable structural motif or functional domain such as a DNA binding domain that activates transcription, e.g., by binding to a specific DNA promoter region an activation domain, or a domain for protein-protein interactions.
Vectors Promoters and Expression Systems
This section describes vectors, promoters, and expression systems that may be used with the present invention. Expression constructs that have been used to transform plants for testing in field trials are also described in Example III. The present invention includes recombinant constructs comprising one or more of the nucleic acid sequences herein. The constructs typically comprise a vector, such as a plasmid, a cosmid, a phage, a virus (e.g., a plant virus), a bacterial artificial chromosome (BAC), a yeast artificial chromosome (YAC), or the like, into which a nucleic acid sequence of the invention has been inserted, in a forward or reverse orientation. In a preferred aspect of this embodiment, the construct further comprises regulatory sequences, including, for example, a promoter, operably linked to the sequence. Large numbers of suitable vectors and promoters are known to those of skill in the art, and are commercially available.
General texts that describe molecular biological techniques useful herein, including the use and production of vectors, promoters and many other relevant topics, include Berger and Kimmel (1987), Sambrook (1989) and Ausubel (2000). Any of the identified sequences can be incorporated into a cassette or vector, e.g., for expression in plants. A number of expression vectors suitable for stable transformation of plant cells or for the establishment of transgenic plants have been described including those described in Weissbach and Weissbach (1989) and Gelvin et al. (1990). Specific examples include those derived from a Ti plasmid of Agrobacterium tumefaciens, as well as those disclosed by Herrera-Estrella et al. (1983), Bevan (1984), and Klee (1985) for dicotyledonous plants.
Alternatively, non-Ti vectors can be used to transfer the DNA into monocotyledonous plants and cells by using free DNA delivery techniques. Such methods can involve, for example, the use of liposomes, electroporation, microprojectile bombardment, silicon carbide whiskers, and viruses. By using these methods transgenic plants such as wheat, rice (Christou (1991) and corn (Gordon-Kamm (1990) can be produced. An immature embryo can also be a good target tissue for monocots for direct DNA delivery techniques by using the particle gun (Weeks et al. (1993); Vasil (1993a); Wan and Lemeaux (1994), and for Agrobacterium-mediated DNA transfer (Ishida et al. (1996)).
Typically, plant transformation vectors include one or more cloned plant coding sequence (genomic or cDNA) under the transcriptional control of 5′ and 3′ regulatory sequences and a dominant selectable marker. Such plant transformation vectors typically also contain a promoter (e.g., a regulatory region controlling inducible or constitutive, environmentally—or developmentally—regulated, or cell- or tissue-specific expression), a transcription initiation start site, an RNA processing signal (such as intron splice sites), a transcription termination site, and/or a polyadenylation signal.
A potential utility for the transcription factor polynucleotides disclosed herein is the isolation of promoter elements from these genes that can be used to program expression in plants of any genes. Each transcription factor gene disclosed herein is expressed in a unique fashion, as determined by promoter elements located upstream of the start of translation, and additionally within an intron of the transcription factor gene or downstream of the termination codon of the gene. As is well known in the art, for a significant portion of genes, the promoter sequences are located entirely in the region directly upstream of the start of translation. In such cases, typically the promoter sequences are located within 2.0 KB of the start of translation, or within 1.5 KB of the start of translation, frequently within 1.0 KB of the start of translation, and sometimes within 0.5 KB of the start of translation.
The promoter sequences can be isolated according to methods known to one skilled in the art.
Examples of constitutive plant promoters which can be useful for expressing the transcription factor sequence include: the cauliflower mosaic virus (CaMV) 35S promoter, which confers constitutive, high-level expression in most plant tissues (see, e.g., Odell et al. (1985)); the nopaline synthase promoter (An et al. (1988)); and the octopine synthase promoter (Fromm et al. (1989)).
The transcription factors of the invention may be operably linked with a specific promoter that causes the transcription factor to be expressed in response to environmental, tissue-specific or temporal signals. A variety of plant gene promoters that regulate gene expression in response to environmental, hormonal, chemical, developmental signals, and in a tissue-active manner can be used for regulating the expression of a polypeptide sequence of the invention in plants. Choice of a promoter is based largely on the phenotype of interest and is determined by such factors as tissue (e.g., seed, fruit, root, pollen, vascular tissue, flower, carpel, etc.), inducibility (e.g., in response to wounding, heat, cold, drought, light, pathogens, etc.), timing, developmental stage, and the like. Numerous known promoters have been characterized and can favorably be employed to promote expression of a polynucleotide of the invention in a transgenic plant or cell of interest. For example, tissue specific promoters include: seed-specific promoters (such as the napin, phaseolin or DC3 promoter described in U.S. Pat. No. 5,773,697), fruit-specific promoters that are active during fruit ripening (such as the dru 1 promoter (U.S. Pat. No. 5,783,393), or the 2A11 promoter (U.S. Pat. No. 4,943,674) and the tomato polygalacturonase promoter (Bird et al. (1988)), root-specific promoters, such as those disclosed in U.S. Pat. Nos. 5,618,988, 5,837,848 and 5,905,186, pollen-active promoters such as PTA29, PTA26 and PTA13 (U.S. Pat. No. 5,792,929), promoters active in vascular tissue (Ringli and Keller (1998)), flower-specific (Kaiser et al. (1995)), pollen (Baerson et al. (1994)), carpels (Ohl et al. (1990)), pollen and ovules (Baerson et al. (1993)), auxin-inducible promoters (such as that described in van der Kop et al. (1999) or Baumann et al. (1999)), cytokinin-inducible promoter (Guevara-Garcia (1998)), promoters responsive to gibberellin (Shi et al. (1998), Willmott et al. (1998)) and the like. Additional promoters are those that elicit expression in response to heat (Ainley et al. (1993)), light (e.g., the pea rbcS-3A promoter, Kuhlemeier et al. (1989)), and the maize rbcS promoter, Schaffner and Sheen (1991)); wounding (e.g., wuni, Siebertz et al. (1989)); pathogens (such as the PR-1 promoter described in Buchel et al. (1999) and the PDF1.2 promoter described in Manners et al. (1998), and chemicals such as methyl jasmonate or salicylic acid (Gatz (1997)). In addition, the timing of the expression can be controlled by using promoters such as those acting at senescence (Gan and Amasino (1995)); or late seed development (Odell et al. (1994)).
Plant expression vectors can also include RNA processing signals that can be positioned within, upstream or downstream of the coding sequence. In addition, the expression vectors can include additional regulatory sequences from the 3′-untranslated region of plant genes, e.g., a 3′ terminator region to increase mRNA stability of the mRNA, such as the PI-II terminator region of potato or the octopine or nopaline synthase 3′ terminator regions.
Expression Hosts
The present invention also relates to host cells which are transduced with vectors of the invention, and the production of polypeptides of the invention (including fragments thereof) by recombinant techniques. Host cells are genetically engineered (i.e., nucleic acids are introduced, e.g., transduced, transformed or transfected) with the vectors of this invention, which may be, for example, a cloning vector or an expression vector comprising the relevant nucleic acids herein. The vector is optionally a plasmid, a viral particle, a phage, a naked nucleic acid, etc. The engineered host cells can be cultured in conventional nutrient media modified as appropriate for activating promoters, selecting transformants, or amplifying the relevant gene. The culture conditions, such as temperature, pH and the like, are those previously used with the host cell selected for expression, and will be apparent to those skilled in the art and in the references cited herein, including, Sambrook (1989) and Ausubel (2000).
The host cell can be a eukaryotic cell, such as a yeast cell, or a plant cell, or the host cell can be a prokaryotic cell, such as a bacterial cell. Plant protoplasts are also suitable for some applications. For example, the DNA fragments are introduced into plant tissues, cultured plant cells or plant protoplasts by standard methods including electroporation (Fromm et al. (1985)), infection by viral vectors such as cauliflower mosaic virus (CaMV) (Hohn et al. (1982); U.S. Pat. No. 4,407,956), high velocity ballistic penetration by small particles with the nucleic acid either within the matrix of small beads or particles, or on the surface (Klein et al. (1987)), use of pollen as vector (WO 85/01856), or use of Agrobacterium tumefaciens or A. rhizogenes carrying a T-DNA plasmid in which DNA fragments are cloned. The T-DNA plasmid is transmitted to plant cells upon infection by Agrobacterium tumefaciens, and a portion is stably integrated into the plant genome (Horsch et al. (1984); Fraley et al. (1983)).
The cell can include a nucleic acid of the invention that encodes a polypeptide, wherein the cell expresses a polypeptide of the invention. The cell can also include vector sequences, or the like. Furthermore, cells and transgenic plants that include any polypeptide or nucleic acid above or throughout this specification, e.g., produced by transduction of a vector of the invention, are an additional feature of the invention.
For long-term, high-yield production of recombinant proteins, stable expression can be used. Host cells transformed with a nucleotide sequence encoding a polypeptide of the invention are optionally cultured under conditions suitable for the expression and recovery of the encoded protein from cell culture. The protein or fragment thereof produced by a recombinant cell may be secreted, membrane-bound, or contained intracellularly, depending on the sequence and/or the vector used. As will be understood by those of skill in the art, expression vectors containing polynucleotides encoding mature proteins of the invention can be designed with signal sequences which direct secretion of the mature polypeptides through a prokaryotic or eukaryotic cell membrane.
Potential Applications of the Presently Disclosed Sequences that Improve Plant Yield and/or Fruit Yield or Quality
The genes identified by the experiment presently disclosed represent potential regulators of plant yield and/or fruit yield or quality. As such, these sequences, or their functional equivalogs, orthologs or paralogs, can be introduced into plant species, including commercial plant species, in order to produce higher yield and/or quality, including higher fruit yield and/or quality.
Production of Transgenic Plants and Modification of Traits
The polynucleotides of the invention are favorably employed to produce transgenic plants with various traits, or characteristics, that have been modified in a desirable manner, e.g., to improve the fruit quality characteristics of a plant. For example, alteration of expression levels or patterns (e.g., spatial or temporal expression patterns) of one or more of the transcription factors (or transcription factor homologs) of the invention, as compared with the levels of the same protein found in a wild-type plant, can be used to modify a plant's traits. An illustrative example of trait modification, improved characteristics, by altering expression levels of a particular transcription factor is described further in the Examples and the Sequence Listing.
Homologous Genes Introduced into Transgenic Plants.
Homologous genes that may be derived from any plant, or from any source whether natural, synthetic, semi-synthetic or recombinant, and that share significant sequence identity or similarity to those provided by the present invention, may be introduced into plants, for example, crop plants, to confer desirable or improved traits. Consequently, transgenic plants may be produced that comprise a recombinant expression vector or cassette with a promoter operably linked to one or more sequences homologous to presently disclosed sequences. The promoter may be, for example, a plant or viral promoter.
The invention thus provides for methods for preparing transgenic plants, and for modifying plant traits. These methods include introducing into a plant a recombinant expression vector or cassette comprising a functional promoter operably linked to one or more sequences homologous to presently disclosed sequences. Plants and kits for producing these plants that result from the application of these methods are also encompassed by the present invention.
Genes, Traits and Utilities that Affect Plant Characteristics
Plant transcription factors can modulate gene expression, and, in turn, be modulated by the environmental experience of a plant. Significant alterations in a plant's environment invariably result in a change in the plant's transcription factor gene expression pattern. Altered transcription factor expression patterns generally result in phenotypic changes in the plant. Transcription factor gene product(s) in transgenic plants then differ(s) in amounts or proportions from that found in wild-type or non-transformed plants, and those transcription factors likely represent polypeptides that are used to alter the response to the environmental change. By way of example, it is well accepted in the art that analytical methods based on altered expression patterns may be used to screen for phenotypic changes in a plant far more effectively than can be achieved using traditional methods.
Antisense and Co-Suppression
In addition to expression of the nucleic acids of the invention as gene replacement or plant phenotype modification nucleic acids, the nucleic acids are also useful for sense and anti-sense suppression of expression, e.g. to down-regulate expression of a nucleic acid of the invention, e.g. as a further mechanism for modulating plant phenotype. That is, the nucleic acids of the invention, or subsequences or anti-sense sequences thereof, can be used to block expression of naturally occurring homologous nucleic acids. A variety of sense and anti-sense technologies are known in the art, e.g. as set forth in Lichtenstein and Nellen (1997). Antisense regulation is also described in Crowley et al. (1985); Rosenberg et al. (1985); Preiss et al. (1985); Melton (1985); Izant and Weintraub (1985); and Kim and Wold (1985). Additional methods for antisense regulation are known in the art. Antisense regulation has been used to reduce or inhibit expression of plant genes in, for example in European Patent Publication No. 271988. Antisense RNA may be used to reduce gene expression to produce a visible or biochemical phenotypic change in a plant (Smith et al. (1988); Smith et al. (1990)). In general, sense or anti-sense sequences are introduced into a cell, where they are optionally amplified, e.g. by transcription. Such sequences include both simple oligonucleotide sequences and catalytic sequences such as ribozymes.
For example, a reduction or elimination of expression (i.e., a “knock-out”) of a transcription factor or transcription factor homolog polypeptide in a transgenic plant, e.g., to modify a plant trait, can be obtained by introducing an antisense construct corresponding to the polypeptide of interest as a cDNA. For antisense suppression, the transcription factor or homolog cDNA is arranged in reverse orientation (with respect to the coding sequence) relative to the promoter sequence in the expression vector. The introduced sequence need not be the full-length cDNA or gene, and need not be identical to the cDNA or gene found in the plant type to be transformed. Typically, the antisense sequence need only be capable of hybridizing to the target gene or RNA of interest. Thus, where the introduced sequence is of shorter length, a higher degree of homology to the endogenous transcription factor sequence will be needed for effective antisense suppression. While antisense sequences of various lengths can be utilized, preferably, the introduced antisense sequence in the vector will be at least 30 nucleotides in length, and improved antisense suppression will typically be observed as the length of the antisense sequence increases. Preferably, the length of the antisense sequence in the vector will be greater than 100 nucleotides. Transcription of an antisense construct as described results in the production of RNA molecules that are the reverse complement of mRNA molecules transcribed from the endogenous transcription factor gene in the plant cell.
Suppression of endogenous transcription factor gene expression can also be achieved using RNA interference, or RNAi. RNAi is a post-transcriptional, targeted gene-silencing technique that uses double-stranded RNA (dsRNA) to incite degradation of messenger RNA (mRNA) containing the same sequence as the dsRNA (Constans (2002)). Small interfering RNAs, or siRNAs are produced in at least two steps: an endogenous ribonuclease cleaves longer dsRNA into shorter, 21-23 nucleotide-long RNAs. The siRNA segments then mediate the degradation of the target mRNA (Zamore (2001). RNAi has been used for gene function determination in a manner similar to antisense oligonucleotides (Constans (2002)). Expression vectors that continually express siRNAs in transiently and stably transfected have been engineered to express small hairpin RNAs (shRNAs), which get processed in vivo into siRNAs-like molecules capable of carrying out gene-specific silencing (Brummelkamp et al. (2002), and Paddison, et al. (2002)). Post-transcriptional gene silencing by double-stranded RNA is discussed in further detail by Hammond et al. (2001), Fire et al. (1998) and Timmons and Fire (1998). Vectors in which RNA encoded by a transcription factor or transcription factor homolog cDNA is over-expressed can also be used to obtain co-suppression of a corresponding endogenous gene, e.g., in the manner described in U.S. Pat. No. 5,231,020 to Jorgensen. Such co-suppression (also termed sense suppression) does not require that the entire transcription factor cDNA be introduced into the plant cells, nor does it require that the introduced sequence be exactly identical to the endogenous transcription factor gene of interest. However, as with antisense suppression, the suppressive efficiency will be enhanced as specificity of hybridization is increased, e.g., as the introduced sequence is lengthened, and/or as the sequence similarity between the introduced sequence and the endogenous transcription factor gene is increased.
Vectors expressing an untranslatable form of the transcription factor mRNA, e.g., sequences comprising one or more stop codon, or nonsense mutation) can also be used to suppress expression of an endogenous transcription factor, thereby reducing or eliminating its activity and modifying one or more traits. Methods for producing such constructs are described in U.S. Pat. No. 5,583,021. Preferably, such constructs are made by introducing a premature stop codon into the transcription factor gene. Alternatively, a plant trait can be modified by gene silencing using double-strand RNA (Sharp (1999)). Another method for abolishing the expression of a gene is by insertion mutagenesis using the T-DNA of Agrobacterium tumefaciens. After generating the insertion mutants, the mutants can be screened to identify those containing the insertion in a transcription factor or transcription factor homolog gene. Plants containing a single transgene insertion event at the desired gene can be crossed to generate homozygous plants for the mutation. Such methods are well known to those of skill in the art (see for example Koncz et al. (1992a, 1992b)).
Alternatively, a plant phenotype can be altered by eliminating an endogenous gene, such as a transcription factor or transcription factor homolog, e.g., by homologous recombination (Kempin et al. (1997)).
A plant trait can also be modified by using the Cre-lox system (for example, as described in U.S. Pat. No. 5,658,772). A plant genome can be modified to include first and second lox sites that are then contacted with a Cre recombinase. If the lox sites are in the same orientation, the intervening DNA sequence between the two sites is excised. If the lox sites are in the opposite orientation, the intervening sequence is inverted.
The polynucleotides and polypeptides of this invention can also be expressed in a plant in the absence of an expression cassette by manipulating the activity or expression level of the endogenous gene by other means, such as, for example, by ectopically expressing a gene by T-DNA activation tagging (Ichikawa et al. (1997); Kakimoto et al. (1996)). This method entails transforming a plant with a gene tag containing multiple transcriptional enhancers and once the tag has inserted into the genome, expression of a flanking gene coding sequence becomes deregulated. In another example, the transcriptional machinery in a plant can be modified so as to increase transcription levels of a polynucleotide of the invention (see, e.g., PCT Publications WO 96/06166 and WO 98/53057 which describe the modification of the DNA-binding specificity of zinc finger proteins by changing particular amino acids in the DNA-binding motif).
The transgenic plant can also include the machinery necessary for expressing or altering the activity of a polypeptide encoded by an endogenous gene, for example, by altering the phosphorylation state of the polypeptide to maintain it in an activated state.
Transgenic plants (or plant cells, or plant explants, or plant tissues) incorporating the polynucleotides of the invention and/or expressing the polypeptides of the invention can be produced by a variety of well established techniques as described above. Following construction of a vector, most typically an expression cassette, including a polynucleotide, e.g., encoding a transcription factor or transcription factor homolog, of the invention, standard techniques can be used to introduce the polynucleotide into a plant, a plant cell, a plant explant or a plant tissue of interest. Optionally, the plant cell, explant or tissue can be regenerated to produce a transgenic plant.
The plant can be any higher plant, including gymnosperms, monocotyledonous and dicotyledonous plants. Suitable protocols are available for Leguminosae (alfalfa, soybean, clover, etc.), Umbelliferae (carrot, celery, parsnip), Cruciferae (cabbage, radish, rapeseed, broccoli, etc.), Curcurbitaceae (melons and cucumber), Gramineae (wheat, corn, rice, barley, millet, etc.), Solanaceae (potato, tomato, tobacco, peppers, etc.), and various other crops. See protocols described in Ammirato et al. (1984); Shimamoto et al. (1989); Fromm et al. (1990); and Vasil et al. (1990).
Transformation and regeneration of both monocotyledonous and dicotyledonous plant cells is now routine, and the selection of the most appropriate transformation technique will be determined by the practitioner. The choice of method will vary with the type of plant to be transformed; those skilled in the art will recognize the suitability of particular methods for given plant types. Suitable methods can include, but are not limited to: electroporation of plant protoplasts; liposome-mediated transformation; polyethylene glycol (PEG) mediated transformation; transformation using viruses; micro-injection of plant cells; micro-projectile bombardment of plant cells; vacuum infiltration; and Agrobacterium tumefaciens mediated transformation. Transformation means introducing a nucleotide sequence into a plant in a manner to cause stable or transient expression of the sequence.
Successful examples of the modification of plant characteristics by transformation with cloned sequences which serve to illustrate the current knowledge in this field of technology, and which are herein incorporated by reference, include: U.S. Pat. Nos. 5,571,706; 5,677,175; 5,510,471; 5,750,386; 5,597,945; 5,589,615; 5,750,871; 5,268,526; 5,780,708; 5,538,880; 5,773,269; 5,736,369 and 5,610,042.
Following transformation, plants are preferably selected using a dominant selectable marker incorporated into the transformation vector. Typically, such a marker will confer antibiotic or herbicide resistance on the transformed plants, and selection of transformants can be accomplished by exposing the plants to appropriate concentrations of the antibiotic or herbicide.
After transformed plants are selected and grown to maturity, those plants showing a modified trait are identified using methods well known in the art that are specifically directed to improved fruit or yield characteristics. Methods that may be used are provided in Examples II through VI. The modified trait can be any of those traits described above. Additionally, to confirm that the modified trait is due to changes in expression levels or activity of the polypeptide or polynucleotide of the invention can be determined by analyzing mRNA expression using Northern blots, RT-PCR or microarrays, or protein expression using immunoblots or Western blots or gel shift assays.
Methods for Increasing Plant Yield or Quality by Modifying Transcription Factor Expression
The present invention includes compositions and methods for increasing the yield and quality of a plant or its products, including those derived from a crop plant. These methods incorporate steps described in the Examples listed below, and may be achieved by inserting a nucleic acid sequence of the invention into the genome of a plant cell: (i) a promoter that functions in the cell; and (ii) a nucleic acid sequence that is substantially identical to any of SEQ ID NO: 2n−1, where n=1 to 1317, or SEQ ID NO: 4839-10667, where the promoter is operably linked to the nucleic acid sequence. A transformed plant may then be generated from the cell. One may either obtain transformed seeds from that plant or its progeny, or propagate the transformed plant asexually. Alternatively, the transformed plant may be grown and harvested for plant products directly.
The methods encompassed by the invention may be extended to propagation techniques used to generate plants. For example, a target plant is transformed with a polynucleotide encoding provided in the Sequence Listing, or a polynucleotide encoding a polypeptide that is an equivalog of one of the polypeptides provided in the Sequence Listing, and that has an improved trait relative to a control plant such as one or more traits provided in Table 7, and the transformed target plant may be “selfed” (i.e., self-pollinated) or crossed with another plant to produce transgenic seed. A progeny plant may be grown from this seed, thus generating a transformed progeny plant with the improved trait as compared to the control plant.
EXAMPLES
It is to be understood that this invention is not limited to the particular devices, machines, materials and methods described. Although particular embodiments are described, equivalent embodiments may be used to practice the invention.
The invention, now being generally described, will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention and are not intended to limit the invention. It will be recognized by one of skill in the art that a transcription factor that is associated with a particular first trait may also be associated with at least one other, unrelated and inherent second trait which was not predicted by the first trait.
Example I
Isolation and Cloning of Full-Length Plant Transcription Factor cDNAs
Putative transcription factor sequences (genomic or ESTs) related to known transcription factors were identified in the Arabidopsis thaliana GenBank database using the tblastn sequence analysis program using default parameters and a P-value cutoff threshold of B4 or B5 or lower, depending on the length of the query sequence. Putative transcription factor sequence hits were then screened to identify those containing particular sequence strings. If the sequence hits contained such sequence strings, the sequences were confirmed as transcription factors.
Alternatively, Arabidopsis thaliana cDNA libraries derived from different tissues or treatments, or genomic libraries were screened to identify novel members of a transcription family using a low stringency hybridization approach. Probes were synthesized using gene specific primers in a standard PCR reaction (annealing temperature 600 C) and labeled with 32P dCTP using the High Prime DNA Labeling Kit (Roche Diagnostics Corp., Indianapolis, Ind.). Purified radiolabelled probes were added to filters immersed in Church hybridization medium (0.5 M NaPO4 pH 7.0, 7% SDS, 1% w/v bovine serum albumin) and hybridized overnight at 60° C. with shaking. Filters were washed two times for 45 to 60 minutes with 1×SCC, 1% SDS at 60° C.
To identify additional sequence 5′ or 3′ of a partial cDNA sequence in a cDNA library, 5′ and 3′ rapid amplification of cDNA ends (RACE) was performed using the MARATHON cDNA amplification kit (Clontech, Palo Alto, Calif.). Generally, the method entailed first isolating poly(A) mRNA, performing first and second strand cDNA synthesis to generate double stranded cDNA, blunting cDNA ends, followed by ligation of the MARATHON Adaptor to the cDNA to form a library of adaptor-ligated ds cDNA.
Gene-specific primers were designed to be used along with adaptor specific primers for both 5′ and 3′ RACE reactions. Nested primers, rather than single primers, were used to increase PCR specificity. Using 5′ and 3′ RACE reactions, 5′ and 3′ RACE fragments were obtained, sequenced and cloned. The process can be repeated until 5′ and 3′ ends of the full-length gene were identified. Then the full-length cDNA was generated by PCR using primers specific to 5′ and 3′ ends of the gene by end-to-end PCR.
Example II
Strategy to Produce a Tomato Population Expressing all Transcription Factors Driven by Various Promoters
Ten promoters were chosen to control the expression of transcription factors in tomato for the purpose of evaluating complex traits in fruit development. All ten are expressed in fruit tissues, although the temporal and spatial expression patterns in the fruit vary (Table 2). All of the promoters have been characterized in tomato using a LexA-GAL4 two-component activation system. The PID (Plasmid IDentifier) and PID SEQ ID NOs used in the field study to drive expression of the sequences of the invention are listed in the second column.







TABLE 2







Promoters, promoter constructs and expression patterns used in the field study











PID and SEQ





ID NO: of





promoter




Promoter
construct
General expression patterns
References





CaMV35S (“35S”)
P6506
Constitutive, high levels of expression in
Odell et al (1985)



SEQ ID NO:
all throughout the plant and fruit




4837




SHOOT MERISTEMLESS
P5318
Expressed in meristematic tissues,
Long and Barton


(STM)
SEQ ID NO:
including apical meristems, cambium.
(1998)



4832
Low levels of expression also in some
Long and Barton




differentiating tissues. In fruit, most
(2000)




strongly expressed in vascular tissues





and endosperm.



ASYMMETRIC LEAVES 1
P5319
Expressed predominately in
Byrne et al


(AS1)
SEQ ID NO:
differentiating tissues. In fruit, most
(2000)



4833
strongly expressed in vascular tissues
Ori et al. (2000)




and in endosperm.



LIPID TRANSFER
P5287
In vegetative tissues, expression
Thoma et al.


PROTEIN 1 (LTP1)
SEQ ID NO:
predominately in epidermis. Low levels
(1994)



4825
of expression also evident in vascular





tissue. In fruit, expression is strongest in





the pith-like columella/placental tissue.



RIBULOSE-1,5-
P5284
Expression predominately in highly
Wanner and


BISPHOSPHATE
SEQ ID NO:
photosynthetic vegetative tissues. Fruit
Gruissem (1991)


CARBOXYLASE, SMALL
4824
expression predominately in the pericarp.



SUBUNIT 3 (RbcS3)





ROOT SYSTEM
P5310
Expression generally limited to roots.
Taylor and


INDUCIBLE 1 (RSI-1)
SEQ ID NO:
Also expressed in the vascular tissues of
Scheuring (1994)



4830
the fruit.



APETALA 1
P5326
Light expression in leaves increases with
Mandel et al.


(AP1)
SEQ ID NO:
maturation. Highest expression in flower
(1992a)



4835
primordia and flower organs. In fruits,
Hempel et al.




predominately in pith-like
(1997)




columella/placental tissue.



POLYGALACTURONASE
P5297
High expression throughout the fruit,
Nicholass et al.


(PG)
SEQ ID NO:
comparable to 35S. Strongest late in fruit
(1995)



4828
development.
Montgomery et





al. (1993)


PHYTOENE
P5303
Moderate expression in fruit tissues.
Corona et al.


DESATURASE
SEQ ID NO:

(1996)


(PD)
4829




CRUCIFERIN 1
P5324
Expressed at low levels in fruit vascular
Breen and


(Cru)
SEQ ID NO:
tissue and columella, endosperm
Crouch (1992)



4834
expression.
Sjodahl et al.





(1995)









Transgenic tomato lines expressing all Arabidopsis transcription factors driven by ten tissue and/or developmentally regulated promoters relied on the use of a two-component system similar to that developed by Guyer et al. (1998) that uses the DNA binding domain of the yeast GAL4 transcriptional activator fused to the activation domains of the maize C1 or the herpes simplex virus VP16 transcriptional activators, respectively. Modifications used either the E. coli lactose repressor DNA binding domain (LacI) or the E. coli LexA DNA binding domain fused to the GAL4 activation domain. The LexA-based system was the most reliable in activating tissue-specific GFP expression in tomato and was used to generate the tomato population. A diagram of the test transformation vectors is shown in FIG. 3. Arabidopsis transcription factor genes replaced the GFP gene in the target vector. As shown in Table 7, various promoters were used in the activator plasmid. Both families of vectors were used to transform tomato to yield one set of transgenic lines harboring different target vector constructs of transcription factor genes and a second population harboring the activator vector constructs of promoter-LexA/GAL4 fusions. Transgenic plants harboring the activator vector construct of promoter-LexA/GAL4 fusions were screened to identify plants with appropriate and high level expression of GUS. In addition, five of each of the transgenic plants harboring the target vector constructs of transcription factor genes were grown and crossed with a 35S activator line. F1 progeny were assayed to ensure that the transgene was capable of being activated by the LexA/GAL4 activator protein. The best plants constitutively expressing transcription factors were selected for subsequent crossing to the ten transgenic activator lines. Several of these initial lines have been evaluated and preliminary results of seedling traits indicate that similar phenotypes observed in Arabidopsis were also observed in tomato when the same transcription factor was constitutively overexpressed. Thus, each parental line harboring either a promoter-LexA/GAL4 activator or an activatible Arabidopsis transcription factors gene were pre-selected based on a functional assessment. These parental lines were used in sexual crosses to generate F1 (hemizygous for the activator and target genes) lines representing the complete set of Arabidopsis transcription factors under the regulation of the promoter. The transgenic tomato population was grown field conditions for evaluation.
Example III
Test Constructs
The Two-Component Multiplication System vectors have an activator vector and a target vector. The LexA version of these is shown in FIG. 3. The LacI versions are identical except that LacI replaces LexA portions. Both LacI and LexA DNA binding regions were tested in otherwise identical vectors. These regions were made from portions of the test vectors described above, using standard cloning methods. They were cloned into a binary vector that had been previously tested in tomato transformations. These vectors were then introduced into Arabidopsis and tomato plants to verify their functionality. The LexA-based system was determined to be the most reliable in activating tissue-specific GFP expression in tomato and was used to generate the tomato population.
A useful feature of the PTF Tool Kit vectors described in FIG. 3 is the use of two different resistance markers, one in the activator vector and another in the target vector. This greatly facilitates identifying the activator and target plant transcription factor genes in plants following crosses. The presence of both the activator and target in the same plant can be confirmed by resistance to both markers. Additionally, plants homozygous for one or both genes can be identified by scoring the segregation ratios of resistant progeny. These resistance markers are useful for making the technology easier to use for the breeder.
Another useful feature of the PTF Tool Kit activator vector described in FIG. 3 is the use of a target GFP construct to characterize the expression pattern of each of the 10 activator promoters. The Activator vector contains a construct consisting of multiple copies of the LexA (or LacI) binding sites and a TATA box upstream of the gene encoding the green fluorescence protein (GFP). This GFP reporter construct verifies that the activator gene is functional and that the promoter has the desired expression pattern before extensive plant crossing and characterizations proceed. The GFP reporter gene is also useful in plants derived from crossing the activator and target parents because it provides an easy method to detect the pattern of expression of expressed plant transcription factor genes.
Example IV
Tomato Transformation and Sulfonamide Selection
After the activator and target vectors were constructed, the vectors were used to transform Agrobacterium tumefaciens cells. Since the target vector comprised a polypeptide or interest (in the example given in FIG. 3, the polypeptide of interest was green fluorescent protein; other polypeptides of interest may include transcription factor polypeptides of the invention), it was expected that plants containing both vectors would be conferred with improved and useful traits. Methods for generating transformed plants with expression vectors are well known in the art; this Example also describes a novel method for transforming tomato plants with a sulfonamide selection marker. In this Example, tomato cotyledon explants were transformed with Agrobacterium cultures comprising target vectors having a sulfonamide selection marker.
Seed sterilization. T63 seeds were surface sterilized in a sterilization solution of 20% bleach (containing 6% sodium hypochlorite) for 20 minutes with constant stirring. Two drops of Tween 20 were added to the sterilization solution as a wetting agent. Seeds were rinsed five times with sterile distilled water, blotted dry with sterile filter paper and transferred to Sigma P4928 phytacons (25 seeds per phytacon) containing 84 ml of MSO medium (the formula for MS medium may be found in Murashige and Skoog (1962); MSO is supplemented as indicated in Table 3).
Seed germination and explanting. Phytacons were placed in a growth room at 24° C. with a 16 hour photoperiod. Seedlings were grown for seven days.
Explanting plates were prepared by placing a 9 cm Whatman No. 2 filter paper onto a plate of 100 mm×25 mm Petri dish containing 25 ml of R1F medium. Tomato seedlings were cut and placed into a 100 mm×25 mm Petri dish containing a 9 cm Whatman No. 2 filter paper and 3 ml of distilled water. Explants were prepared by cutting cotyledons into three pieces. The two proximal pieces were transferred onto the explanting plate, and the distal section was discarded. One hundred twenty explants were placed on each plate. A control plate was also prepared that was not subjected to the Agrobacterium transformation procedure. Explants were kept in the dark at 24° C. for 24 hours.
Agrobacterium culture preparation and cocultivation. The stock of Agrobacterium tumefaciens cells for transformation were made as described by Nagel et al. (1990). Agrobacterium strain ABI was grown in 250 ml LB medium (Sigma) overnight at 28° C. with shaking until an absorbance over 1 cm at 600 nm (A600) of 0.5-1.0 was reached. Cells were harvested by centrifugation at 4,000×g for 15 minutes at 4° C. Cells were then resuspended in 2501 chilled buffer (1 mM HEPES, pH adjusted to 7.0 with KOH). Cells were centrifuged again as described above and resuspended in 125 μL chilled buffer. Cells were then centrifuged and resuspended two more times in the same HEPES buffer as described above at a volume of 100 μL and 750 μL, respectively. Resuspended cells were then distributed into 40 μL aliquots, quickly frozen in liquid nitrogen, and stored at −80° C.
Agrobacterium cells were transformed with vectors prepared as described above following the protocol described by Nagel et al. (1990). For each DNA construct to be transformed, 50 to 100 ng DNA (generally resuspended in 10 mM Tris-HCl, 1 mM EDTA, pH 8.0) were mixed with 40 μL of Agrobacterium cells. The DNA/cell mixture was then transferred to a chilled cuvette with a 2 mm electrode gap and subject to a 2.5 kV charge dissipated at 25 RF and 200 RF using a Gene Pulser TI apparatus (Bio-Rad, Hercules, Calif.). After electroporation, cells were immediately resuspended in 1.0 ml LB and allowed to recover without antibiotic selection for 2 B 4 hours at 28° C. in a shaking incubator. After recovery, cells were plated onto selective medium of LB broth containing 100 μg/ml spectinomycin (Sigma) and incubated for 24-48 hours at 28° C. Single colonies were then picked and inoculated in fresh medium. The presence of the vector construct was verified by PCR amplification and sequence analysis.
Agrobacteria were cultured in two sequential overnight cultures. On day 1, the agrobacteria containing the target vectors having the sulfonamide selection vector (FIG. 3) were grown in 25 ml of liquid 523 medium (Moore et al. (1988)) plus 100 mg spectinomycin, 50 mg kanamycin, and 25 mg chloramphenicol per liter. On day 2, five ml of the first overnight suspension were added to 25 ml of AB medium to which is added 100 mg spectinomycin, 50 mg kanamycin, and 25 mg chloramphenicol per liter. Cultures were grown at 28° C. with constant shaking on a gyratory shaker. The second overnight suspension was centrifuged in a 38 ml sterile Oakridge tubes for 5 minutes at 8000 rpm in a Beckman JA20 rotor. The pellet was resuspended in 10 ml of MSO liquid medium containing 600 μm acetosyringone (for each 20 ml of MSO medium, 40 μl of 0.3 M stock acetosyringone were added). The Agrobacterium concentration was adjusted to an A600 of 0.25.
Seven milliliters of this Agrobacterium suspension were added to each of explanting plates. After 20 minutes, the Agrobacterium suspension was aspirated and the explants were blotted dry three times with sterile filter paper. The plates were sealed with Parafilm® and incubated in the dark at 21° C. for 48 hours.
Regeneration. Cocultivated explants were transferred after 48 hours in the dark to 100 mm×25 mm Petri plates (20 explants per plate) containing 25 ml of R1SB10 medium (this medium and subsequently used media contained sulfadiazine, the sulfonamide antibiotic used to select transformants). Plates were kept in the dark for 72 hours and then placed in low light. After 14 days, the explants were transferred to fresh RZ1/2SB25 medium. After an additional 14 days, the regenerating tissues at the edge of the explants were excised away from the primary explants and were transferred onto fresh RZ1/2SB25 medium. After another 14 day interval, regenerating tissues were again transferred to fresh ROSB25 medium. After this period, the regenerating tissues were subsequently rotated between ROSB25 and RZ1/2SB25 media at two week intervals. The well defined shoots that appeared were excised and transferred to ROSB100 medium for rooting.
Shoot Analysis. Once shoots were rooted on ROSB100 medium, small leaf pieces from the rooted shoots were sampled and analyzed with a polymerase chain reaction procedure (PCR) for the presence of the SulA gene. The PCR-positive shoots (TO) were then grown to maturity in the greenhouses. Some TO plants were crossed to plants containing the CaMV 35S activator vector. The TO self pollinated seeds were saved for later crosses to different activator promoters.







TABLE 3







Media Compositions (amounts per liter)














MSO
R1F
R1SB10
RZ1/2SB25
ROSB25
ROSB100






















Gibco ® MS Salts
4.3
g
4.3
g
4.3
g
4.3
g
4.3
g
4.3
g


RO Vitamins (100X)
10
ml




5
ml
10
ml
10
ml


R1 Vitamins (100X)


10
ml
10
ml








RZ Vitamins (100X)






5
ml






Glucose
16.0
g
16.0
g
16.0
g
16.0
g
16.0
g
16.0
g


Timentin ®




100
mg








Carbenicillin






350
mg
350
mg
350
mg













Noble Agar
8
11.5
10.3
10.45
10.45
10.45



















MES




0.6
g
0.6
g
0.6
g
0.6
g


Sulfadiazine free acid




1
ml
2.5
ml
2.5
ml
10
ml


(10 mg/ml stock)

























pH
5.7
5.7
5.7
5.7
5.7
5.7
















TABLE 4







100x Vitamins (amounts per liter)











RO
R1
RZ















Nicotinic acid
500 mg 
500 mg 
500 mg 



Thiamine HCl
50 mg
50 mg
50 mg



Pyridoxine HCl
50 mg
50 mg
50 mg



Myo-inositol
20 g  
20 g  
20 g  



Glycine
200 mg 
200 mg 
200 mg 



Zeatin

0.65 mg  
0.65 mg  



IAA

1.0 mg 




pH
5.7
5.7
5.7
















TABLE 5





523 Medium (amounts per liter)


















Sucrose
10 g 



Casein Enzymatic Hydrolysate
8 g



Yeast Extract
4 g



K2HPO4
2 g



MgSO4•7H2O
0.3 g  



pH
7.00
















TABLE 6







AB Medium












Part A

Part B (10X stock)


















K2HPO4
3
g
MgSO4•7H2O
3
g



NaH2PO4
1
g
CaCl2
0.1
g



NH4Cl
1
g
FeSO4•7H2O
0.025
g



KCl
0.15
g
Glucose
50
g












pH
7.00

7.00














Volume
900
ml

1000
ml





Prepared by autoclaving and mixing 900 ml Part A with 100 ml Part B.






Example V
Population Characterization and Measurements
After the crosses were made (to generate plants having both activator and target vectors), general characterization of the F1 population was performed in the field. General evaluation included photographs of seedling and adult plant morphology, photographs of leaf shape, open flower morphology and of mature green and ripe fruit. Vegetative plant size, a measure of plant biomass, was measured by ruler at approximately two months after transplant. Plant volume was obtained by the multiplication of the three dimensions. In addition, observations were made to determine fruit number per plant. Three red-ripe fruit were harvested from each individual plant when possible and were used for the lycopene and Brix assays. Two weeks later, six fruits per promoter::gene grouping were harvested, with two fruits per plant harvested when possible. The fruits were pooled, weighed, and seeds collected.
Measurement of soluble solids. “Brix” measurement was used to determine the amount of sugar in solution. For example, 18 degree Brix sugar solution contains 18% sugar (w/w basis). Brix was measured using a refractometer (which measures refractive index). Brix measurements were performed by the follow protocol:

    
    
        1. Three red ripe fruit were harvest from each plant sampled.
        2. Each sample of three fruit was weighed together
        3. The three fruit were then quartered and blended together at high speed in a blender for approximately four minutes, until a fine puree was produced.
        4. Two 40 ml aliquots were decanted from the pureed sampled into 50 ml polypropylene tubes.
        5. Samples were then kept frozen at −20° C. until analysis
        6. For analysis samples were thawed in warm water.
        7. Approximately 15 ml of thawed tomato puree was filtered and placed onto the reading surface of a digital refractometer, and the reading recorded.
    
    


Fruit lycopene measurements. Lycopene is a pigment responsible for color of fruits (e.g., the red color of tomatoes). It was measured by the following procedure:

    
    
        1. Three red ripe fruit were harvest from each plant sampled.
        2. Each sample of three fruit was weighed together
        3. The three fruit were then quartered and blended together at high speed in a blender for approximately four minutes, until a fine puree was produced.
        4. Two 40 ml aliquots were decanted from the pureed sampled into 50 ml polypropylene tubes.
        5. Samples were frozen at −20° C. until further analysis was performed
        6. Samples were thawed in warm water.
        7. Lycopene level was measured using high performance liquid chromatography (HPLC).
    
    


Source/sink activities. Source/sink activities were determined by screening for lines in which Arabidopsis transcription factors were driven by the RbcS-3 (leaf mesophyll expression), LTP1 (epidermis and vascular expression) and the PD (early fruit development) promoters. These promoters target source processes localized in photosynthetically active cells (RbcS-3), sink processes localized in developing fruit (PD) or transport processes active in vascular tissues (LTP1) that link source and sink activities. Leaf punches were collected within one hour of sunrise, in the seventh week after transplant, and stored in ethanol. The leaves were then stained with iodine, and plants with notably high or low levels of starch were noted.
Fruit ripening regulation. Screening for traits associated with fruit ripening focused on transgenic tomato lines in which Arabidopsis transcription factors are driven by the PD (early fruit development) and PG (fruit ripening) promoters. These promoters target fruit regulatory processes that lead to fruit maturation or which trigger ripening or components of the ripening process. In order to identify lines expressing transcription factors that impact ripening, fruits at 1 cm stage, a developmental time 7-10 days post anthesis and shortly after fruit set were tagged. Tagging occurred over a single two-day period per field trial at a time when plants are in the early fruiting stage to ensure tagging of one to two fruits per plant, and four to six fruits per line. Tagged fruit at the “breaker” stage on any given inspection were marked with a second colored and dated tag. Later inspections included monitoring of breaker-tagged fruit to identify any that have reached the full red ripe stage. To assess the regulation of components of the ripening process, fruit at the mature green and red ripe stage have been harvested and fruit texture analyzed by force necessary to compress equator of the fruit by 2 mm.
Example VI
Screening CaMV 35S Activator Line Progeny with the Transcription Factor Target Lines to Identify Lines Expressing Plant Transcription Factors
The plant transcription factor target plants that were initially prepared lacked an activator gene to facilitate later crosses to various activator promoter lines. In order to find transformants that were adequately expressed in the presence of an activator, the plant transcription factor plants were crossed to the CaMV 35S promoter activator line and screened for transcription factor expression by RT-PCR. The mRNA was reverse transcribed into cDNA and the amount of product was measured by quantitative PCR.
Because the parental lines were each heterozygous for the transgenes, T1 hybrid progeny were sprayed with chlorsulfuron and cyanamide to find the 25% of the progeny containing both the activator (chlorsulfuron resistant) and target (cyanamide resistant) transgenes. Segregation ratios were measured and lines with abnormal ratios were discarded. Too high a ratio indicated multiple inserts, while too low a ratio indicated a variety of possible problems. The ideal inserts produced 50% resistant progeny. Progeny containing both inserts appeared at 25% because they also required the other herbicidal markers from the Activator parental line (50%×50%).
These T1 hybrid progeny were then screened in a 96 well format for plant transcription factor gene expression by RT-PCR to ensure expression of the target plant transcription factor gene, as certain chromosomal positions can be silent or very poorly expressed or the gene can be disrupted during the integration process. The 96 well format was also used for cDNA synthesis and PCR. This procedure involves the use of one primer in the transcribed portion of the vector and a second gene-specific primer.
Because both the activator and target genes are dominant in their effects, phenotypes were observable in hybrid progeny containing both genes. These T1F1 plants were examined for visual phenotypes. However, more detailed analysis for increased color, high solids and disease resistance were also conducted once the best lines were identified and reproduced on a larger scale.
Example VII
Results of Overexpressing Specific Promoter::Transcription Factor Combinations in Tomato Plants
Using the methods described in the above Examples, a number of Arabidopsis sequences were identified that resulted, when expressed in tomato plants, in greater brix, greater fruit weight, greater lycopene, greater biomass, more chlorosis, darker green fruit, darker green leaves, deeper red fruit, larger flowers, larger leaflets, larger leaflets, larger and lighter green leaves, rugulose leaves, more anthocyanin, more trichomes, paler white fruit at the green fruit stage, thicker stems, very high vigor, and/or waxier leaves, as compared to a control plant. Table 7 shows a number of polypeptides of the invention shown to improve fruit or yield characteristics. SEQ ID NOs and GID (Gene IDentifiers) are listed in Columns 1 and 2. The conserved domains in amino acid coordinates (beginning from the n-terminus of each polypeptide) of each polypeptide associates with particular Transcription Factor Family, and the Transcription Factor Families to which the polypeptide belongs, are listed in Columns 3 and 4, respectively. The PID (Plasmid IDentifier) and PID SEQ ID NOs are listed in Columns 5 and 6, respectively. The promoters used to drive expression of the polynucleotides encoding the polypeptides and the traits that were observed in tomato plants when each polypeptide sequence was overexpressed in tomato plants, relative to traits observed in control tomato plants, are listed in Column 7. Sequences listed below for the traits of increased lycopene, brix and fruit weight were in the top 5% of all tomato lycopene, brix and fruit weight measurements, respectively.







TABLE 7







Polypeptides of the invention, their conserved domains, families and the traits conferred by


overexpressing the polypeptides in tomato plants

















Col. 5
Col. 6
Col. 7




Col. 3

Second
SEQ ID
Experimental



Col. 2
TF family (conserved
Col. 4
construct
NO: of
observation


Col. 1
SEQ ID
domain amino acid
First construct (expression
containing
second
(trait relative


GID
NO:
coordinates)
system)
TF
construct
to controls)
















G2
464
AP2 (129-195, 221-288)
P5310 (root-expressed
P8197
4657
Inc. brix





RSI1 prom.)





G2
464
AP2 (129-195, 221-288)
P5284 (leaf-expressed
P8197
4657
Inc. lycopene





RbcS3 prom.)





G2
464
AP2 (129-195, 221-288)
P5310 (root-expressed
P8197
4657
Inc. lycopene





RSI1 prom.)





G3
944
AP2 (28-95)
P5284 (leaf-expressed
P3375
4181
Inc. lycopene





RbcS3 prom.)





G3
944
AP2 (28-95)
P5326 (floral meristem-
P3375
4181
Inc. lycopene





expressed AP1 prom.)





G4
1054
AP2 (121-183)
P5326 (floral meristem-
P7794
4619
Inc. lycopene





expressed AP1 prom.)





G7
1210
AP2 (58-125)
P5319 (emergent leaf
P6439
4454
Inc. fruit





primordia-expressed AS1


weight





prom.)





G8
1256
AP2 (151-217, 243-293)
P5297 (fruit tissue-
P6038
4416
Inc. brix





expressed PG prom.)





G8
1256
AP2 (151-217, 243-293)
P5303 (fruit tissue-
P6038
4416
Inc. brix





expressed PD prom.)





G8
1256
AP2 (151-217, 243-293)
P5318 (shoot apical
P6038
4416
Inc. brix





meristem-expressed STM








prom.)





G15
230
AP2 (281-357, 383-451)
P5284 (leaf-expressed
P9218
4812
Inc. lycopene





RbcS3 prom.)





G19
416
AP2 (76-143)
P5297 (fruit tissue-
P5056
4370
Inc. brix





expressed PG prom.)





G19
416
AP2 (76-143)
P5297 (fruit tissue-
P5056
4370
Inc. lycopene





expressed PG prom.)





G20
466
AP2 (68-144)
P5284 (leaf-expressed
P9251
4816
Inc. brix





RbcS3 prom.)





G20
466
AP2 (68-144)
P5297 (fruit tissue-
P9251
4816
Inc. lycopene





expressed PG prom.)





G20
466
AP2 (68-144)
P5284 (leaf-expressed
P9251
4816
Inc. lycopene





RbcS3 prom.)





G21
516
AP2 (97-164)
P5324 (fruit vascular
P4364
4290
Inc. lycopene





tissue-expressed Cru








prom.)





G22
570
AP2 (88-152)
P5326 (floral meristem-
P3376
4182
Inc. brix





expressed AP1 prom.)





G22
570
AP2 (88-152)
P5284 (leaf-expressed
P3376
4182
Inc. lycopene





RbcS3 prom.)





G22
570
AP2 (88-152)
P5303 (fruit tissue-
P3376
4182
Inc. lycopene





expressed PD prom.)





G22
570
AP2 (88-152)
P5326 (floral meristem-
P3376
4182
Inc. lycopene





expressed AP1 prom.)





G26
728
AP2 (67-134)
P5297 (fruit tissue-
P9131
4790
Inc. lycopene





expressed PG prom.)





G28
828
AP2 (145-208)
P5326 (floral meristem-
P7826
4620
Inc. lycopene





expressed AP1 prom.)





G28
828
AP2 (145-208)
P5297 (fruit tissue-
P7826
4620
Inc. lycopene





expressed PG prom.)





G28
828
AP2 (145-208)
P5287 (epidermal tissue-
P7826
4620
Inc. lycopene





expressed LTP1 prom.)





G29
884
AP2 (134-197)
P5284 (leaf-expressed
P6441
4455
Inc. brix





RbcS3 prom.)





G30
946
AP2 (16-80)
P5297 (fruit tissue-
P3852
4223
Inc. brix





expressed PG prom.)





G32
1002
AP2 (17-84)
P6506 (constitutive CaMv
P6849
4480
Inc. brix





35S prom.)





G32
1002
AP2 (17-84)
P5324 (fruit vascular
P6849
4480
Inc. fruit





tissue-expressed Cru


weight





prom.)





G35
1022
AP2 (NA)
P5326 (floral meristem-
P5130
4383
Inc. fruit





expressed AP1 prom.)


weight


G35
1022
AP2 (NA)
P5318 (shoot apical
P5130
4383
Inc. fruit





meristem-expressed STM


weight





prom.)





G36
1034
AP2 (NA)
P5297 (fruit tissue-
P6149
4426
Inc. brix





expressed PG prom.)





G43
1072
AP2 (104-172)
P5287 (epidermal tissue-
P9092
4778
Inc. fruit





expressed LTP1 prom.)


weight


G43
1072
AP2 (104-172)
P5326 (floral meristem-
P9092
4778
Inc. fruit





expressed AP1 prom.)


weight


G47
1096
AP2 (10-75)
P5318 (shoot apical
P3853
4224
Inc. lycopene





meristem-expressed STM








prom.)





G137
154
MADS (1-57)
P5297 (fruit tissue-
P7474
4555
Inc. brix





expressed PG prom.)





G137
154
MADS (1-57)
P6506 (constitutive CaMv
P7474
4555
Inc. brix





35S prom.)





G137
154
MADS (1-57)
P5324 (fruit vascular
P7474
4555
Inc. brix





tissue-expressed Cru








prom.)





G138
158
MADS (1-57)
P5284 (leaf-expressed
P7475
4556
Inc. brix





RbcS3 prom.)





G139
166
MADS (1-57)
P5319 (emergent leaf
P7476
4557
Inc. fruit





primordia-expressed AS1


weight





prom.)





G140
172
MADS (16-72)
P5318 (shoot apical
P7771
4611
Inc. fruit





meristem-expressed STM


weight





prom.)





G145
196
MADS (1-57)
P5297 (fruit tissue-
P8652
4730
Inc. fruit





expressed PG prom.)


weight


G146
202
MADS (1-57)
P5318 (shoot apical
P7477
4558
Inc. lycopene





meristem-expressed STM








prom.)





G148
216
MADS (1-57)
P5326 (floral meristem-
P8537
4695
Inc. fruit





expressed AP1 prom.)


weight


G154
254
MADS (2-57)
P5326 (floral meristem-
P9152
4799
Inc. fruit





expressed AP1 prom.)


weight


G156
270
MADS (2-57)
P5326 (floral meristem-
P3354
4176
Inc. lycopene





expressed AP1 prom.)





G157
272
MADS (2-57)
P6506 (constitutive CaMv
P6885
4492
Inc. brix





35S prom.)





G159
274
MADS (7-61)
P5287 (epidermal tissue-
P4955
4369
Inc. lycopene





expressed LTP1 prom.)





G165
292
MADS (7-62)
P5284 (leaf-expressed
P7065
4510
Inc. brix





RbcS3 prom.)





G166
300
MADS (2-56)
P5297 (fruit tissue-
P7056
4507
Inc. lycopene





expressed PG prom.)





G167
310
MADS (2-57)
P5318 (shoot apical
P6872
4487
Inc. brix





meristem-expressed STM








prom.)





G168
314
MADS (1-57)
P5326 (floral meristem-
P7059
4508
Inc. fruit





expressed AP1 prom.)


weight


G168
314
MADS (1-57)
P5287 (epidermal tissue-
P7059
4508
Inc. fruit





expressed LTP1 prom.)


weight


G179
356
WRKY (65-121)
P6506 (constitutive CaMv
P6892
4493
Inc. lycopene





35S prom.)





G179
356
WRKY (65-121)
P5287 (epidermal tissue-
P6892
4493
Inc. lycopene





expressed LTP1 prom.)





G179
356
WRKY (65-121)
P5297 (fruit tissue-
P6892
4493
Inc. lycopene





expressed PG prom.)





G189
410
WRKY (240-297)
P5318 (shoot apical
P3357
4177
Inc. fruit





meristem-expressed STM


weight





prom.)





G190
418
WRKY (110-169)
P5318 (shoot apical
P5142
4384
Inc. lycopene





meristem-expressed STM








prom.)





G190
418
WRKY (110-169)
P5326 (floral meristem-
P5142
4384
Inc. lycopene





expressed AP1 prom.)





G194
438
WRKY (174-230)
P5318 (shoot apical
P3582
4194
Inc. lycopene





meristem-expressed STM








prom.)





G194
438
WRKY (174-230)
P5284 (leaf-expressed
P3582
4194
Inc. lycopene





RbcS3 prom.)





G194
438
WRKY (174-230)
P5284 (leaf-expressed
P3582
4194
Inc. brix





RbcS3 prom.)





G204
482
MYB-related (6-54)
P5318 (shoot apical
P9076
4774
Inc. brix





meristem-expressed STM








prom.)





G204
482
MYB-related (6-54)
P5287 (epidermal tissue-
P9076
4774
Inc. brix





expressed LTP1 prom.)





G206
490
MYB-(R1)R2R3 (13-
P5287 (epidermal tissue-
P9137
4793
Inc. brix




116)
expressed LTP1 prom.)





G206
490
MYB-(R1)R2R3 (13-
P5326 (floral meristem-
P9137
4793
Inc. lycopene




116)
expressed AP1 prom.)





G206
490
MYB-(R1)R2R3 (13-
P5310 (root-expressed
P9137
4793
Inc. lycopene




116)
RSI1 prom.)





G209
510
MYB-related (36-82)
P5318 (shoot apical
P3765
4213
Inc. fruit





meristem-expressed STM


weight





prom.)





G210
518
MYB-(R1)R2R3 (14-
P5297 (fruit tissue-
P9123
4788
Inc. fruit




114)
expressed PG prom.)


weight


G210
518
MYB-(R1)R2R3 (14-
P5318 (shoot apical
P9123
4788
Inc. fruit




114)
meristem-expressed STM


weight





prom.)





G210
518
MYB-(R1)R2R3 (14-
P5287 (epidermal tissue-
P9123
4788
Inc. fruit




114)
expressed LTP1 prom.)


weight


G210
518
MYB-(R1)R2R3 (14-
P5284 (leaf-expressed
P9123
4788
Inc. fruit




114)
RbcS3 prom.)


weight


G210
518
MYB-(R1)R2R3 (14-
P5326 (floral meristem-
P9123
4788
Inc. fruit




114)
expressed AP1 prom.)


weight


G211
528
MYB-(R1)R2R3 (24-
P5287 (epidermal tissue-
P4359
4288
Inc. lycopene




137)
expressed LTP1 prom.)





G211
528
MYB-(R1)R2R3 (24-
P5318 (shoot apical
P4359
4288
Inc. lycopene




137)
meristem-expressed STM








prom.)





G216
564
MYB-(R1)R2R3 (49-
P5310 (root-expressed
P9134
4791
Inc. brix




151)
RSI1 prom.)





G217
566
MYB-related (8-55)
P5287 (epidermal tissue-
P5842
4406
Inc. lycopene





expressed LTP1 prom.)





G219
568
MYB-related (98-146)
P5303 (fruit tissue-
P7082
4514
Inc. brix





expressed PD prom.)





G219
568
MYB-related (98-146)
P5318 (shoot apical
P7082
4514
Inc. brix





meristem-expressed STM








prom.)





G219
568
MYB-related (98-146)
P5284 (leaf-expressed
P7082
4514
Inc. brix





RbcS3 prom.)





G219
568
MYB-related (98-146)
P5326 (floral meristem-
P7082
4514
Inc. brix





expressed AP1 prom.)





G222
576
MYB-(R1)R2R3 (13-
P5310 (root-expressed
P5839
4405
Inc. lycopene




119)
RSI1 prom.)





G225
588
MYB-related (36-80)
P5310 (root-expressed
P9125
4789
Inc. brix





RSI1 prom.)





G225
588
MYB-related (36-80)
P5326 (floral meristem-
P9125
4789
Inc. fruit





expressed AP1 prom.)


weight


G227
596
MYB-(R1)R2R3 (13-
P5297 (fruit tissue-
P4021
4247
Inc. brix




113)
expressed PG prom.)





G229
598
MYB-(R1)R2R3 (14-
P5284 (leaf-expressed
P7860
4627
Inc. brix




120)
RbcS3 prom.)





G232
622
MYB-(R1)R2R3 (14-
P5284 (leaf-expressed
P9119
4786
Inc. brix




115)
RbcS3 prom.)





G236
632
MYB-(R1)R2R3 (NA)
P5287 (epidermal tissue-
P5843
4407
Inc. brix





expressed LTP1 prom.)





G236
632
MYB-(R1)R2R3 (NA)
P6506 (constitutive CaMv
P5843
4407
Inc. biomass





35S prom.)





G236
632
MYB-(R1)R2R3 (NA)
P5284 (leaf-expressed
P5843
4407
Inc. biomass





RbcS3 prom.)





G237
634
MYB-(R1)R2R3 (11-
P5303 (fruit tissue-
P4877
4361
Inc. lycopene




113)
expressed PD prom.)





G237
634
MYB-(R1)R2R3 (11-
P5297 (fruit tissue-
P4877
4361
Inc. lycopene




113)
expressed PG prom.)





G237
634
MYB-(R1)R2R3 (11-
P5284 (leaf-expressed
P4877
4361
Dark green




113)
RbcS3 prom.)


leaves


G239
644
MYB-(R1)R2R3 (21-
P5287 (epidermal tissue-
P5843
4407
Inc. brix




125)
expressed LTP1 prom.)





G239
644
MYB-(R1)R2R3 (21-
P5287 (epidermal tissue-
P5843
4407
Inc. lycopene




125)
expressed LTP1 prom.)





G239
644
MYB-(R1)R2R3 (21-
P5318 (shoot apical
P5843
4407
Inc. lycopene




125)
meristem-expressed STM








prom.)





G241
650
MYB-(R1)R2R3 (14-
P5297 (fruit tissue-
P9136
4792
Inc. lycopene




114)
expressed PG prom.)





G242
654
MYB-(R1)R2R3 (6-
P5310 (root-expressed
P9121
4787
Inc. lycopene




106)
RSI1 prom.)





G242
654
MYB-(R1)R2R3 (6-
P5326 (floral meristem-
P9121
4787
Inc. fruit




106)
expressed AP1 prom.)


weight


G242
654
MYB-(R1)R2R3 (6-
P5297 (fruit tissue-
P9121
4787
Inc. fruit




106)
expressed PG prom.)


weight


G242
654
MYB-(R1)R2R3 (6-
P5284 (leaf-expressed
P9121
4787
Inc. fruit




106)
RbcS3 prom.)


weight


G242
654
MYB-(R1)R2R3 (6-
P5287 (epidermal tissue-
P9121
4787
Inc. fruit




106)
expressed LTP1 prom.)


weight


G243
666
MYB-(R1)R2R3 (12-
P5326 (floral meristem-
P7459
4551
Inc. brix




128)
expressed AP1 prom.)





G245
670
MYB-(R1)R2R3 (14-
P5284 (leaf-expressed
P7007
4500
Inc. fruit




114)
RbcS3 prom.)


weight


G246
678
MYB-(R1)R2R3 (57-
P5297 (fruit tissue-
P9046
4770
Inc. lycopene




159)
expressed PG prom.)





G255
696
MYB-(R1)R2R3 (14-
P5318 (shoot apical
P6841
4479
Inc. fruit




116)
meristem-expressed STM


weight





prom.)





G258
720
MYB-(R1)R2R3 (24-
P5297 (fruit tissue-
P4194
4267
Inc. brix




124)
expressed PG prom.)





G258
720
MYB-(R1)R2R3 (24-
P5326 (floral meristem-
P4194
4267
Inc. fruit




124)
expressed AP1 prom.)


weight


G259
726
HS (40-131)
P5287 (epidermal tissue-
P4172
4261
Inc. lycopene





expressed LTP1 prom.)





G261
734
HS (15-106)
P5297 (fruit tissue-
P5145
4385
Inc. fruit





expressed PG prom.)


weight


G262
738
HS (52-143)
P5284 (leaf-expressed
P4759
4347
Inc. lycopene





RbcS3 prom.)





G264
746
HS (23-114)
P5284 (leaf-expressed
P8948
4764
Inc. fruit





RbcS3 prom.)


weight


G264
746
HS (23-114)
P5318 (shoot apical
P8948
4764
Inc. fruit





meristem-expressed STM


weight





prom.)





G264
746
HS (23-114)
P5287 (epidermal tissue-
P8948
4764
Inc. fruit





expressed LTP1 prom.)


weight


G265
750
HS (13-104)
P5297 (fruit tissue-
P7086
4517
Inc. brix





expressed PG prom.)





G268
762
AKR (186-689)
P5287 (epidermal tissue-
P8695
4748
Inc. fruit





expressed LTP1 prom.)


weight


G273
794
AKR (93-610)
P5318 (shoot apical
P6817
4474
Inc. fruit





meristem-expressed STM


weight





prom.)





G274
798
AKR (94-600)
P5287 (epidermal tissue-
P7087
4518
Inc. fruit





expressed LTP1 prom.)


weight


G277
812
AKR (28-173)
P5319 (emergent leaf
P7162
4541
Inc. fruit





primordia-expressed AS1


weight





prom.)





G279
820
HMG (31-103)
P5303 (fruit tissue-
P7021
4502
Inc. brix





expressed PD prom.)





G280
830
AT-hook (97-104, 130-
P5324 (fruit vascular
P6901
4497
Inc. brix




137-155-162, 185-192)
tissue-expressed Cru








prom.)





G285
860
MISC (NA)
P5297 (fruit tissue-
P5248
4386
Inc. brix





expressed PG prom.)





G286
866
ENBP (206-252, 332-
P5284 (leaf-expressed
P5249
4387
Inc. brix




409, 588-786)
RbcS3 prom.)





G286
866
ENBP (206-252, 332-
P5297 (fruit tissue-
P5249
4387
Inc. brix




409, 588-786)
expressed PG prom.)





G286
866
ENBP (206-252, 332-
P6506 (constitutive CaMv
P5249
4387
Inc. brix




409, 588-786)
35S prom.)





G286
866
ENBP (206-252, 332-
P5319 (emergent leaf
P5249
4387
Inc. brix




409, 588-786)
primordia-expressed AS1








prom.)





G286
866
ENBP (206-252, 332-
P5326 (floral meristem-
P5249
4387
Inc. brix




409, 588-786)
expressed AP1 prom.)





G288
870
MISC (309-361)
P5287 (epidermal tissue-
P6452
4458
Inc. fruit





expressed LTP1 prom.)


weight


G288
870
MISC (309-361)
P5284 (leaf-expressed
P6452
4458
Inc. fruit





RbcS3 prom.)


weight


G290
886
SWI/SNF (538-
P5284 (leaf-expressed
P4785
4360
Inc. fruit




784, 919-958, 1086-
RbcS3 prom.)


weight




1169)






G290
886
SWI/SNF (538-
P5287 (epidermal tissue-
P4785
4360
Inc. fruit




784, 919-958, 1086-
expressed LTP1 prom.)


weight




1169)






G294
908
MISC (NA)
P5297 (fruit tissue-
P4560
4313
Inc. brix





expressed PG prom.)





G295
910
bZIP (287-354)
P5318 (shoot apical
P4783
4359
Inc. brix





meristem-expressed STM








prom.)





G306
974
SCR (370-435, 486-
P5324 (fruit vascular


Inc. lycopene




573, 576-649)
tissue-expressed Cru








prom.)





G309
992
SCR (223-288, 342-
P5287 (epidermal tissue-
P9195
4811
Inc. fruit




427, 431-505)
expressed LTP1 prom.)


weight


G321
1004
RING/C3HC4 (NA)
P5297 (fruit tissue-


Inc. fruit





expressed PG prom.)


weight


G322
1006
RING/C3HC4 (NA)
P5287 (epidermal tissue-


Inc. lycopene





expressed LTP1 prom.)





G323
1008
RING/C3HC4 (48-96)
P5297 (fruit tissue-
P4201
4269
Inc. brix





expressed PG prom.)





G323
1008
RING/C3HC4 (48-96)
P5318 (shoot apical
P4201
4269
Inc. lycopene





meristem-expressed STM








prom.)





G326
1010
Z-CO-like (11-94, 354-
P5303 (fruit tissue-
P5256
4388
Inc. brix




400)
expressed PD prom.)





G326
1010
Z-CO-like (11-94, 354-
P6506 (constitutive CaMv
P5256
4388
Inc. brix




400)
35S prom.)





G326
1010
Z-CO-like (11-94, 354-
P5284 (leaf-expressed
P5256
4388
Inc. brix




400)
RbcS3 prom.)





G328
1012
Z-CO-like (12-78)
P5297 (fruit tissue-
P3955
4227
Inc. lycopene





expressed PG prom.)





G328
1012
Z-CO-like (12-78)
P5326 (floral meristem-
P3955
4227
Inc. lycopene





expressed AP1 prom.)





G335
1014
Z-Tall-1 (205-218)
P5287 (epidermal tissue-
P8167
4653
Inc. brix





expressed LTP1 prom.)





G335
1014
Z-Tall-1 (205-218)
P5287 (epidermal tissue-
P8167
4653
Inc. lycopene





expressed LTP1 prom.)





G341
1016
Z-C3H (254-374)
P5297 (fruit tissue-
P8566
4703
Inc. brix





expressed PG prom.)





G344
1018
GATA/Zn (166-192)
P5287 (epidermal tissue-
P6181
4431
Inc. brix





expressed LTP1 prom.)





G344
1018
GATA/Zn (166-192)
P5326 (floral meristem-
P6181
4431
Inc. brix





expressed AP1 prom.)





G345
1020
GATA/Zn (NA)
P5287 (epidermal tissue-
P6819
4475
Inc. brix





expressed LTP1 prom.)





G350
1024
Z-C2H2 (91-113, 150-
P5326 (floral meristem-
P6197
4434
Inc. brix




170)
expressed AP1 prom.)





G351
1026
Z-C2H2 (77-97, 118-
P5284 (leaf-expressed
P7773
4612
Inc. lycopene




140)
RbcS3 prom.)





G351
1026
Z-C2H2 (77-97, 118-
P5297 (fruit tissue-
P7773
4612
Inc. lycopene




140)
expressed PG prom.)





G352
1028
Z-C2H2 (99-119, 166-
P5284 (leaf-expressed
P4225
4276
Inc. brix




186)
RbcS3 prom.)





G354
1030
Z-C2H2 (42-62, 88-109)
P5297 (fruit tissue-
P4535
4310
Inc. brix





expressed PG prom.)





G354
1030
Z-C2H2 (42-62, 88-109)
P5284 (leaf-expressed
P4535
4310
Inc. brix





RbcS3 prom.)





G354
1030
Z-C2H2 (42-62, 88-109)
P5287 (epidermal tissue-
P4535
4310
Inc. fruit





expressed LTP1 prom.)


weight


G357
1032
Z-C2H2 (7-29)
P5326 (floral meristem-


Inc. lycopene





expressed AP1 prom.)





G362
1036
Z-C2H2 (62-82)
P5324 (fruit vascular
P6468
4464
Inc. fruit





tissue-expressed Cru


weight





prom.)





G363
1038
Z-C2H2 (87-108)
P5287 (epidermal tissue-


Inc. lycopene





expressed LTP1 prom.)





G365
1040
Z-C2H2 (70-90)
P5303 (fruit tissue-
P6820
4476
Inc. brix





expressed PD prom.)





G368
1042
Z-C2H2 (NA)
P5324 (fruit vascular
P5262
4389
Inc. lycopene





tissue-expressed Cru








prom.)





G379
1044
RING/C3HC4 (16-56)
P5318 (shoot apical
P8225
4665
Inc. fruit





meristem-expressed STM


weight





prom.)





G383
1046
GATA/Zn (77-102)
P5318 (shoot apical
P4352
4285
Inc. lycopene





meristem-expressed STM








prom.)





G383
1046
GATA/Zn (77-102)
P5303 (fruit tissue-
P4352
4285
Inc. fruit





expressed PD prom.)


weight


G385
1048
HB (60-123)
P5287 (epidermal tissue-
P8937
4762
Inc. fruit





expressed LTP1 prom.)


weight


G385
1048
HB (60-123)
P5284 (leaf-expressed
P8937
4762
Inc. fruit





RbcS3 prom.)


weight


G385
1048
HB (60-123)
P5318 (shoot apical
P8937
4762
Inc. fruit





meristem-expressed STM


weight





prom.)





G392
1050
HB (15-75)
P5318 (shoot apical
P9145
4796
Inc. fruit





meristem-expressed STM


weight





prom.)





G399
1052
HB (126-186)
P5287 (epidermal tissue-
P5060
4371
Inc. lycopene





expressed LTP1 prom.)





G399
1052
HB (126-186)
P5326 (floral meristem-
P5060
4371
Inc. lycopene





expressed AP1 prom.)





G406
1056
HB (58-118)
P5326 (floral meristem-
P4533
4309
Inc. lycopene





expressed AP1 prom.)





G409
1058
HB (64-124)
P5318 (shoot apical
P9141
4794
Inc. fruit





meristem-expressed STM


weight





prom.)





G411
1060
HB (NA)
P5319 (emergent leaf
P9142
4795
Inc. brix





primordia-expressed AS1








prom.)





G411
1060
HB (NA)
P5310 (root-expressed
P9142
4795
Inc. brix





RSI1 prom.)





G411
1060
HB (NA)
P5310 (root-expressed
P9142
4795
Inc. lycopene





RSI1 prom.)





G413
1062
HB (37-97)
P5318 (shoot apical
P8730
4754
Inc. fruit





meristem-expressed STM


weight





prom.)





G413
1062
HB (37-97)
P5326 (floral meristem-
P8730
4754
Inc. fruit





expressed AP1 prom.)


weight


G413
1062
HB (37-97)
P5297 (fruit tissue-
P8730
4754
Inc. fruit





expressed PG prom.)


weight


G415
1064
HB (550-610)
P5297 (fruit tissue-
P6044
4418
Inc. brix





expressed PG prom.)





G415
1064
HB (550-610)
P5284 (leaf-expressed
P6044
4418
Inc. brix





RbcS3 prom.)





G421
1066
HB (371-434)
P5297 (fruit tissue-
P8206
4658
Inc. lycopene





expressed PG prom.)





G426
1068
HB (346-406)
P5326 (floral meristem-
P6445
4456
Inc. fruit





expressed AP1 prom.)


weight


G428
1070
HB (229-292)
P5297 (fruit tissue-
P5061
4372
Inc. brix





expressed PG prom.)





G432
1074
HB (NA)
P5287 (epidermal tissue-
P3967
4230
Inc. lycopene





expressed LTP1 prom.)





G432
1074
HB (NA)
P5318 (shoot apical
P3967
4230
Inc. fruit





meristem-expressed STM


weight





prom.)





G435
1076
HB (4-67)
P5284 (leaf-expressed
P3771
4214
Inc. lycopene





RbcS3 prom.)





G440
1078
AP2 (122-184)
P5303 (fruit tissue-
P5265
4390
Inc. brix





expressed PD prom.)





G443
1080
IAA (NA)
P5297 (fruit tissue-
P9079
4775
Inc. brix





expressed PG prom.)





G443
1080
IAA (NA)
P5297 (fruit tissue-
P9079
4775
Inc. lycopene





expressed PG prom.)





G443
1080
IAA (NA)
P5310 (root-expressed
P9079
4775
Inc. lycopene





RSI1 prom.)





G449
1082
IAA (NA)
P5326 (floral meristem-
P5266
4391
Inc. brix





expressed AP1 prom.)





G450
1084
IAA (6-14, 78-89, 112-
P5318 (shoot apical
P4012
4244
Inc. lycopene




128, 180-217)
meristem-expressed STM








prom.)





G450
1084
IAA (6-14, 78-89, 112-
P5326 (floral meristem-
P4012
4244
Inc. lycopene




128, 180-217)
expressed AP1 prom.)





G451
1086
IAA (12-20, 57-68, 76-
P5297 (fruit tissue-
P9081
4776
Inc. brix




92, 131-164)
expressed PG prom.)





G452
1088
IAA (NA)
P5287 (epidermal tissue-
P5065
4373
Inc. brix





expressed LTP1 prom.)





G463
1090
IAA (14-23, 77-88, 130-
P5318 (shoot apical
P5067
4374
Inc. lycopene




146, 194-227)
meristem-expressed STM








prom.)





G463
1090
IAA (14-23, 77-88, 130-
P5284 (leaf-expressed
P5067
4374
Inc. lycopene




146, 194-227)
RbcS3 prom.)





G467
1092
IAA (NA)
P5287 (epidermal tissue-
P7027
4503
Inc. fruit





expressed LTP1 prom.)


weight


G468
1094
IAA (86-102, 141-171)
P5297 (fruit tissue-
P7537
4576
Inc. brix





expressed PG prom.)





G468
1094
IAA (86-102, 141-171)
P5297 (fruit tissue-
P7537
4576
Inc. lycopene





expressed PG prom.)





G481
1098
CAAT (20-109)
P5324 (fruit vascular
P6812
4473
Inc. fruit





tissue-expressed Cru


weight





prom.)





G481
1098
CAAT (20-109)
P5326 (floral meristem-
P6812
4473
Inc. fruit





expressed AP1 prom.)


weight


G482
1100
CAAT (26-115)
P5287 (epidermal tissue-
P5072
4375
Inc. brix





expressed LTP1 prom.)





G485
1102
CAAT (20-109)
P5318 (shoot apical
P4190
4266
Inc. fruit





meristem-expressed STM


weight





prom.)





G489
1104
CAAT (68-164)
P5297 (fruit tissue-
P3404
4183
Inc. brix





expressed PG prom.)





G501
1106
NAC (10-131)
P5318 (shoot apical
P5272
4392
Inc. brix





meristem-expressed STM








prom.)





G501
1106
NAC (10-131)
P5303 (fruit tissue-
P5272
4392
Inc. brix





expressed PD prom.)





G508
1108
NAC (NA)
P5319 (emergent leaf
P5274
4393
Inc. brix





primordia-expressed AS1








prom.)





G508
1108
NAC (NA)
P5303 (fruit tissue-
P5274
4393
Inc. brix





expressed PD prom.)





G513
1110
NAC (16-161)
P5287 (epidermal tissue-
P5507
4394
Inc. fruit





expressed LTP1 prom.)


weight


G519
1112
NAC (10-131)
P5297 (fruit tissue-
P9098
4779
Inc. brix





expressed PG prom.)





G522
1114
NAC (10-165)
P6506 (constitutive CaMv
P4942
4366
Inc. brix





35S prom.)





G525
1116
NAC (23-167)
P5287 (epidermal tissue-
P5076
4376
Inc. fruit





expressed LTP1 prom.)


weight


G525
1116
NAC (23-167)
P5318 (shoot apical
P5076
4376
Inc. fruit





meristem-expressed STM


weight





prom.)





G525
1116
NAC (23-167)
P5326 (floral meristem-
P5076
4376
Inc. fruit





expressed AP1 prom.)


weight


G527
1118
NAC (NA)
P5326 (floral meristem-
P6470
4465
Inc. brix





expressed AP1 prom.)





G527
1118
NAC (NA)
P5297 (fruit tissue-
P6470
4465
Inc. brix





expressed PG prom.)





G527
1118
NAC (NA)
P5303 (fruit tissue-
P6470
4465
Inc. brix





expressed PD prom.)





G527
1118
NAC (NA)
P6506 (constitutive CaMv
P6470
4465
Inc. brix





35S prom.)





G529
1120
GF14 (229-236)
P5303 (fruit tissue-
P5513
4395
Inc. brix





expressed PD prom.)





G530
1122
GF14 (227-235)
P5284 (leaf-expressed
P4523
4307
Inc. brix





RbcS3 prom.)





G530
1122
GF14 (227-235)
P5287 (epidermal tissue-
P4523
4307
Inc. fruit





expressed LTP1 prom.)


weight


G531
1124
GF14 (227-234)
P5326 (floral meristem-
P7130
4530
Inc. brix





expressed AP1 prom.)





G531
1124
GF14 (227-234)
P5287 (epidermal tissue-
P7130
4530
Inc. brix





expressed LTP1 prom.)





G532
1126
GF14 (NA)
P5297 (fruit tissue-
P7131
4531
Inc. brix





expressed PG prom.)





G547
1128
Z-C2H2 (79-99, 164-
P5326 (floral meristem-
P8614
4716
Inc. fruit




184, 222-244)
expressed AP1 prom.)


weight


G553
1130
bZIP (94-160)
P6506 (constitutive CaMv
P3778
4215
Inc. lycopene





35S prom.)





G553
1130
bZIP (94-160)
P5303 (fruit tissue-
P3778
4215
Inc. fruit





expressed PD prom.)


weight


G556
1132
bZIP (83-143)
P5287 (epidermal tissue-
P4162
4259
Inc. fruit





expressed LTP1 prom.)


weight


G558
1134
bZIP (45-105)
P5319 (emergent leaf
P3573
4191
Inc. lycopene





primordia-expressed AS1








prom.)





G558
1134
bZIP (45-105)
P5318 (shoot apical
P3573
4191
Inc. lycopene





meristem-expressed STM








prom.)





G559
1136
bZIP (203-264)
P5326 (floral meristem-
P3585
4195
Inc. lycopene





expressed AP1 prom.)





G562
1138
bZIP (253-315)
P5318 (shoot apical
P6000
4412
Inc. fruit





meristem-expressed STM


weight





prom.)





G563
1140
bZIP (186-248)
P5318 (shoot apical
P4896
4363
Large leaflets





meristem-expressed STM








prom.)





G563
1140
bZIP (186-248)
P5324 (fruit vascular
P4896
4363
Large leaflets





tissue-expressed Cru








prom.)





G567
1142
bZIP (210-270)
P5297 (fruit tissue-
P4762
4348
Inc. brix





expressed PG prom.)





G567
1142
bZIP (210-270)
P5297 (fruit tissue-
P4762
4348
Inc. lycopene





expressed PG prom.)





G567
1142
bZIP (210-270)
P5319 (emergent leaf
P4762
4348
Inc. lycopene





primordia-expressed AS1








prom.)





G568
1144
bZIP (215-265)
P5297 (fruit tissue-
P7120
4527
Inc. brix





expressed PG prom.)





G577
1146
BZIPT2 (1-53, 356-466)
P5326 (floral meristem-
P4026
4250
Inc. brix





expressed AP1 prom.)





G577
1146
BZIPT2 (1-53, 356-466)
P5326 (floral meristem-
P4026
4250
Inc. lycopene





expressed AP1 prom.)





G579
1148
bZIP (167-227)
P5287 (epidermal tissue-
P3981
4237
Inc. lycopene





expressed LTP1 prom.)





G579
1148
bZIP (167-227)
P5287 (epidermal tissue-
P4025
4249
Inc. lycopene





expressed LTP1 prom.)





G580
1150
bZIP (162-218)
P5318 (shoot apical
P3657
4212
Inc. brix





meristem-expressed STM








prom.)





G580
1150
bZIP (162-218)
P5318 (shoot apical
P3657
4212
Inc. lycopene





meristem-expressed STM








prom.)





G580
1150
bZIP (162-218)
P6506 (constitutive CaMv
P3657
4212
Inc. lycopene





35S prom.)





G580
1150
bZIP (162-218)
P5287 (epidermal tissue-
P6493
4469
Inc. fruit





expressed LTP1 prom.)


weight


G588
1152
HLH/MYC (313-370)
P5284 (leaf-expressed
P7856
4625
Inc. fruit





RbcS3 prom.)


weight


G591
1154
HLH/MYC (149-206)
P5318 (shoot apical
P5085
4377
Inc. fruit





meristem-expressed STM


weight





prom.)





G595
1156
HLH/MYC (NA)
P5287 (epidermal tissue-
P9103
4780
Inc. brix





expressed LTP1 prom.)





G596
1158
AT-hook (89-97, 98-
P5318 (shoot apical
P7033
4504
Inc. fruit




244)
meristem-expressed STM


weight





prom.)





G598
1160
DBP (205-263)
P5319 (emergent leaf
P6001
4413
Inc. brix





primordia-expressed AS1








prom.)





G598
1160
DBP (205-263)
P5326 (floral meristem-
P6001
4413
Inc. lycopene





expressed AP1 prom.)





G599
1162
DBP (187-219, 264-
P5303 (fruit tissue-
P6417
4445
Inc. brix




300)
expressed PD prom.)





G599
1162
DBP (187-219, 264-
P5326 (floral meristem-
P6417
4445
Inc. brix




300)
expressed AP1 prom.)





G599
1162
DBP (187-219, 264-
P5324 (fruit vascular
P6417
4445
Inc. brix




300)
tissue-expressed Cru








prom.)





G615
1164
TEO (88-147)
P5284 (leaf-expressed
P7159
4540
Inc. brix





RbcS3 prom.)





G619
1166
ARF (64-406)
P6506 (constitutive CaMv
P5706
4403
Inc. brix





35S prom.)





G619
1166
ARF (64-406)
P5326 (floral meristem-
P5706
4403
Inc. brix





expressed AP1 prom.)





G625
1168
AP2 (52-119)
P5297 (fruit tissue-
P6837
4478
Inc. brix





expressed PG prom.)





G631
1170
bZIP (212-282)
P5326 (floral meristem-
P6460
4461
Inc. lycopene





expressed AP1 prom.)





G634
1172
TH (62-147, 189-245)
P5297 (fruit tissue-
P7198
4545
Inc. lycopene





expressed PG prom.)





G635
1174
TH (239-323)
P5303 (fruit tissue-
P3619
4203
Inc. brix





expressed PD prom.)





G635
1174
TH (239-323)
P5303 (fruit tissue-
P3619
4203
Inc. lycopene





expressed PD prom.)





G639
1176
TH (304-389)
P5284 (leaf-expressed
P3641
4206
Inc. lycopene





RbcS3 prom.)





G641
1178
TH (23-102)
P5326 (floral meristem-
P7134
4532
Inc. fruit





expressed AP1 prom.)


weight


G645
1180
SCR (276-341, 392-
P5297 (fruit tissue-
P6053
4420
Inc. brix




479, 480-553)
expressed PG prom.)





G645
1180
SCR (276-341, 392-
P5284 (leaf-expressed
P6053
4420
Inc. lycopene




479, 480-553)
RbcS3 prom.)





G649
1182
RING/C3H2C3 (NA)
P5326 (floral meristem-
P5091
4378
Inc. brix





expressed AP1 prom.)





G653
1184
Z-LIM (10-61, 109-160)
P5284 (leaf-expressed
P9248
4815
Inc. lycopene





RbcS3 prom.)





G655
1186
MYB-(R1)R2R3 (44-
P5284 (leaf-expressed
P6430
4448
Inc. lycopene




206)
RbcS3 prom.)





G655
1186
MYB-(R1)R2R3 (44-
P5324 (fruit vascular
P6430
4448
Inc. fruit




206)
tissue-expressed Cru


weight





prom.)





G658
1188
MYB-(R1)R2R3 (2-
P5324 (fruit vascular
P6002
4414
Inc. brix




105)
tissue-expressed Cru








prom.)





G658
1188
MYB-(R1)R2R3 (2-
P5284 (leaf-expressed
P6002
4414
Inc. lycopene




105)
RbcS3 prom.)





G659
1190
MYB-(R1)R2R3 (16-
P5326 (floral meristem-
P6429
4447
Inc. fruit




116)
expressed AP1 prom.)


weight


G663
1192
MYB-(R1)R2R3 (9-
P6506 (constitutive CaMv
P5094
4379
Inc. fruit




111)
35S prom.)


weight


G663
1192
MYB-(R1)R2R3 (9-
P5303 (fruit tissue-
P5094
4379
Inc. fruit




111)
expressed PD prom.)


weight


G664
1194
MYB-(R1)R2R3 (14-
P5287 (epidermal tissue-
P7015
4501
Inc. lycopene




116)
expressed LTP1 prom.)





G665
1196
MYB-related (91-139)
P5284 (leaf-expressed
P6430
4448
Inc. lycopene





RbcS3 prom.)





G666
1198
MYB-(R1)R2R3 (14-
P5297 (fruit tissue-
P6431
4449
Inc. biomass




116)
expressed PG prom.)





G674
1200
MYB-(R1)R2R3 (20-
P5284 (leaf-expressed
P7123
4528
Inc. lycopene




120)
RbcS3 prom.)





G675
1202
MYB-(R1)R2R3 (13-
P5284 (leaf-expressed
P4019
4245
Inc. lycopene




116)
RbcS3 prom.)





G675
1202
MYB-(R1)R2R3 (13-
P5318 (shoot apical
P4019
4245
Inc. lycopene




116)
meristem-expressed STM








prom.)





G675
1202
MYB-(R1)R2R3 (13-
P5319 (emergent leaf
P4019
4245
Inc. lycopene




116)
primordia-expressed AS1








prom.)





G675
1202
MYB-(R1)R2R3 (13-
P5326 (floral meristem-
P4019
4245
Inc. lycopene




116)
expressed AP1 prom.)





G679
1204
MYB-related (102-150)
P6506 (constitutive CaMv
P6433
4450
Inc. brix





35S prom.)





G682
1206
MYB-related (33-77)
P5287 (epidermal tissue-
P5099
4380
Inc. lycopene





expressed LTP1 prom.)





G699
1208
HB (52-115)
P5287 (epidermal tissue-
P6494
4470
Inc. fruit





expressed LTP1 prom.)


weight


G699
1208
HB (52-115)
P5284 (leaf-expressed
P6494
4470
Inc. fruit





RbcS3 prom.)


weight


G707
1212
HB (109-169)
P5284 (leaf-expressed
P8734
4757
Inc. brix





RbcS3 prom.)





G707
1212
HB (109-169)
P5287 (epidermal tissue-
P8734
4757
Inc. brix





expressed LTP1 prom.)





G714
1214
CAAT (58-150)
P5284 (leaf-expressed
P7861
4628
Inc. lycopene





RbcS3 prom.)





G714
1214
CAAT (58-150)
P5297 (fruit tissue-
P7861
4628
Inc. lycopene





expressed PG prom.)





G715
1216
CAAT (53-149)
P5287 (epidermal tissue-
P8668
4736
Inc. fruit





expressed LTP1 prom.)


weight


G720
1218
GARP (301-349)
P5284 (leaf-expressed
P6076
4425
Inc. lycopene





RbcS3 prom.)





G720
1218
GARP (301-349)
P5287 (epidermal tissue-
P6076
4425
Inc. lycopene





expressed LTP1 prom.)





G721
1220
GARP (NA)
P5326 (floral meristem-
P4888
4362
Inc. brix





expressed AP1 prom.)





G722
1222
GARP (188-236)
P5324 (fruit vascular
P6042
4417
Inc. fruit





tissue-expressed Cru


weight





prom.)





G724
1224
GARP (86-134)
P5326 (floral meristem-
P8493
4688
Inc. brix





expressed AP1 prom.)





G724
1224
GARP (86-134)
P5310 (root-expressed
P8493
4688
Inc. lycopene





RSI1 prom.)





G724
1224
GARP (86-134)
P5287 (epidermal tissue-
P8493
4688
Inc. lycopene





expressed LTP1 prom.)





G724
1224
GARP (86-134)
P5284 (leaf-expressed
P8493
4688
Inc. fruit





RbcS3 prom.)


weight


G727
1226
GARP (226-269)
P5287 (epidermal tissue-
P6406
4441
Inc. fruit





expressed LTP1 prom.)


weight


G730
1228
GARP (169-217)
P5287 (epidermal tissue-
P8528
4693
Inc. lycopene





expressed LTP1 prom.)





G732
1230
bZIP (31-91)
P5318 (shoot apical
P7084
4515
Inc. fruit





meristem-expressed STM


weight





prom.)





G748
1232
Z-Dof (112-140)
P5324 (fruit vascular
P3363
4178
Inc. lycopene





tissue-expressed Cru








prom.)





G748
1232
Z-Dof (112-140)
P6506 (constitutive CaMv
P3363
4178
Inc. lycopene





35S prom.)





G748
1232
Z-Dof (112-140)
P5318 (shoot apical
P3363
4178
Inc. fruit





meristem-expressed STM


weight





prom.)





G749
1234
Z-C3H (125-177)
P5287 (epidermal tissue-
P5105
4381
Inc. fruit





expressed LTP1 prom.)


weight


G751
1236
Z-Dof (37-82)
P5284 (leaf-expressed
P6495
4471
Inc. brix





RbcS3 prom.)





G751
1236
Z-Dof (37-82)
P5287 (epidermal tissue-
P6495
4471
Inc. brix





expressed LTP1 prom.)





G756
1238
Z-C3H (199-319)
P5287 (epidermal tissue-
P7748
4603
Inc. brix





expressed LTP1 prom.)





G763
1240
NAC (17-157)
P5318 (shoot apical
P5541
4396
Inc. brix





meristem-expressed STM








prom.)





G763
1240
NAC (17-157)
P5297 (fruit tissue-
P5541
4396
Inc. brix





expressed PG prom.)





G764
1242
NAC (27-171)
P5297 (fruit tissue-
P6496
4472
Inc. brix





expressed PG prom.)





G764
1242
NAC (27-171)
P5297 (fruit tissue-
P6496
4472
Inc. lycopene





expressed PG prom.)





G783
1244
HLH/MYC (24-82)
P5319 (emergent leaf


Inc. lycopene





primordia-expressed AS1








prom.)





G783
1244
HLH/MYC (24-82)
P5318 (shoot apical


Inc. fruit





meristem-expressed STM


weight





prom.)





G783
1244
HLH/MYC (24-82)
P5287 (epidermal tissue-


Inc. fruit





expressed LTP1 prom.)


weight


G783
1244
HLH/MYC (24-82)
P5297 (fruit tissue-


Inc. fruit





expressed PG prom.)


weight


G787
1246
HLH/MYC (49-105)
P5297 (fruit tissue-
P9254
4817
Inc. brix





expressed PG prom.)





G787
1246
HLH/MYC (49-105)
P5287 (epidermal tissue-
P9254
4817
Inc. brix





expressed LTP1 prom.)





G787
1246
HLH/MYC (49-105)
P5326 (floral meristem-
P9254
4817
Inc. brix





expressed AP1 prom.)





G789
1248
HLH/MYC (253-310)
P5324 (fruit vascular
P7068
4511
Inc. brix





tissue-expressed Cru








prom.)





G790
1250
HLH/MYC (NA)
P5284 (leaf-expressed
P4044
4254
Inc. brix





RbcS3 prom.)





G792
1252
HLH/MYC (63-122)
P5318 (shoot apical
P7110
4524
Inc. brix





meristem-expressed STM








prom.)





G792
1252
HLH/MYC (63-122)
P5319 (emergent leaf
P7110
4524
Inc. brix





primordia-expressed AS1








prom.)





G793
1254
HLH/MYC (147-204)
P5287 (epidermal tissue-
P5111
4382
Inc. brix





expressed LTP1 prom.)





G793
1254
HLH/MYC (147-204)
P5287 (epidermal tissue-
P5111
4382
Inc. lycopene





expressed LTP1 prom.)





G810
1258
HS (23-114)
P5284 (leaf-expressed
P4763
4349
Inc. brix





RbcS3 prom.)





G811
1260
HS (17-108)
P5326 (floral meristem-
P8573
4704
Inc. fruit





expressed AP1 prom.)


weight


G811
1260
HS (17-108)
P5287 (epidermal tissue-
P8573
4704
Inc. fruit





expressed LTP1 prom.)


weight


G811
1260
HS (17-108)
P5318 (shoot apical
P8573
4704
Inc. fruit





meristem-expressed STM


weight





prom.)





G812
1262
HS (29-120)
P5284 (leaf-expressed
P3650
4209
Inc. lycopene





RbcS3 prom.)





G819
1264
AKR (88-598)
P5284 (leaf-expressed
P8953
4765
Inc. brix





RbcS3 prom.)





G830
1266
AKR (89-601)
P5324 (fruit vascular
P6165
4428
Inc. brix





tissue-expressed Cru








prom.)





G843
1268
MISC (60-119, 270-
P6506 (constitutive CaMv
P4559
4312
Inc. lycopene




350)
35S prom.)





G843
1268
MISC (60-119, 270-
P5326 (floral meristem-
P4559
4312
Inc. lycopene




350)
expressed AP1 prom.)





G865
1270
AP2 (36-103)
P5297 (fruit tissue-
P7088
4519
Inc. brix





expressed PG prom.)





G865
1270
AP2 (36-103)
P5318 (shoot apical
P7088
4519
Inc. brix





meristem-expressed STM








prom.)





G865
1270
AP2 (36-103)
P5319 (emergent leaf
P7088
4519
Inc. brix





primordia-expressed AS1








prom.)





G869
1272
AP2 (110-165)
P5297 (fruit tissue-
P9105
4781
Inc. lycopene





expressed PG prom.)





G869
1272
AP2 (110-165)
P5310 (root-expressed
P9105
4781
Inc. lycopene





RSI1 prom.)





G881
1274
WRKY (176-233)
P5318 (shoot apical
P5557
4397
Inc. lycopene





meristem-expressed STM








prom.)





G886
1276
BZIPT2 (1-53, 542-652)
P5287 (epidermal tissue-
P6828
4477
Inc. brix





expressed LTP1 prom.)





G896
1278
Z-LSDlike (18-39)
P5303 (fruit tissue-
P7452
4548
Inc. fruit





expressed PD prom.)


weight


G896
1278
Z-LSDlike (18-39)
P5284 (leaf-expressed
P7452
4548
Inc. fruit





RbcS3 prom.)


weight


G896
1278
Z-LSDlike (18-39)
P5297 (fruit tissue-
P7452
4548
Inc. fruit





expressed PG prom.)


weight


G896
1278
Z-LSDlike (18-39)
P5324 (fruit vascular
P7452
4548
Inc. fruit





tissue-expressed Cru


weight





prom.)





G896
1278
Z-LSDlike (18-39)
P5287 (epidermal tissue-
P7452
4548
Inc. fruit





expressed LTP1 prom.)


weight


G896
1278
Z-LSDlike (18-39)
P5318 (shoot apical
P7452
4548
Inc. fruit





meristem-expressed STM


weight





prom.)





G897
1280
Z-CO-like (8-39, 51-82)
P5318 (shoot apical
P7085
4516
Inc. lycopene





meristem-expressed STM








prom.)





G902
1282
Z-CO-like (NA)
P5319 (emergent leaf
P9089
4777
Inc. fruit





primordia-expressed AS1


weight





prom.)





G902
1282
Z-CO-like (NA)
P5324 (fruit vascular
P9089
4777
Inc. fruit





tissue-expressed Cru


weight





prom.)





G902
1282
Z-CO-like (NA)
P5318 (shoot apical
P9089
4777
Inc. fruit





meristem-expressed STM


weight





prom.)





G904
1284
RING/C3H2C3 (117-
P5318 (shoot apical
P4748
4342
Inc. lycopene




158)
meristem-expressed STM








prom.)





G905
1286
RING/C3H2C3 (118-
P5318 (shoot apical
P8548
4697
Inc. brix




159)
meristem-expressed STM








prom.)





G910
1288
Z-CO-like (14-37, 77-
P5297 (fruit tissue-
P6867
4486
Inc. brix




103)
expressed PG prom.)





G920
1290
WRKY (152-211)
P5326 (floral meristem-
P8941
4763
Inc. lycopene





expressed AP1 prom.)





G921
1292
WRKY (146-203)
P5287 (epidermal tissue-
P5826
4404
Inc. lycopene





expressed LTP1 prom.)





G927
1294
CAAT (136-199)
P5284 (leaf-expressed
P6434
4451
Inc. brix





RbcS3 prom.)





G927
1294
CAAT (136-199)
P5297 (fruit tissue-
P6434
4451
Inc. brix





expressed PG prom.)





G927
1294
CAAT (136-199)
P5284 (leaf-expressed
P6434
4451
Inc. lycopene





RbcS3 prom.)





G927
1294
CAAT (136-199)
P5297 (fruit tissue-
P6434
4451
Inc. lycopene





expressed PG prom.)





G929
1296
CAAT (98-157)
P5324 (fruit vascular
P9107
4782
Very high





tissue-expressed Cru


vigor





prom.)





G934
1298
ARF (NA)
P5326 (floral meristem-
P8669
4737
Inc. brix





expressed AP1 prom.)





G934
1298
ARF (NA)
P5284 (leaf-expressed
P8669
4737
Inc. lycopene





RbcS3 prom.)





G936
1300
GARP (59-107)
P5318 (shoot apical
P7536
4575
Inc. brix





meristem-expressed STM








prom.)





G937
1302
GARP (197-246)
P5324 (fruit vascular
P4527
4308
Inc. fruit





tissue-expressed Cru


weight





prom.)





G938
1304
EIL (96-104)
P5310 (root-expressed


Inc. lycopene





RSI1 prom.)





G939
1306
EIL (97-106)
P5318 (shoot apical
P3590
4196
Inc. brix





meristem-expressed STM








prom.)





G939
1306
EIL (97-106)
P5318 (shoot apical
P3590
4196
Inc. lycopene





meristem-expressed STM








prom.)





G941
1308
EIL (95-103)
P5297 (fruit tissue-
P5565
4398
Inc. lycopene





expressed PG prom.)





G961
1310
NAC (12-180)
P5326 (floral meristem-
P8222
4663
Inc. fruit





expressed AP1 prom.)


weight


G961
1310
NAC (12-180)
P5310 (root-expressed
P8222
4663
Inc. fruit





RSI1 prom.)


weight


G962
1312
NAC (53-175)
P5297 (fruit tissue-
P6873
4488
Inc. brix





expressed PG prom.)





G963
1314
NAC (NA)
P5324 (fruit vascular
P4330
4279
Inc. lycopene





tissue-expressed Cru








prom.)





G975
1316
AP2 (4-71)
P5324 (fruit vascular
P3367
4179
Inc. lycopene





tissue-expressed Cru








prom.)





G976
1318
AP2 (87-153)
P5318 (shoot apical
P3823
4216
Inc. brix





meristem-expressed STM








prom.)





G976
1318
AP2 (87-153)
P5326 (floral meristem-
P3823
4216
Inc. brix





expressed AP1 prom.)





G976
1318
AP2 (87-153)
P5287 (epidermal tissue-
P3823
4216
Inc. brix





expressed LTP1 prom.)





G979
1320
AP2 (63-139, 165-233)
P5287 (epidermal tissue-
P3635
4205
Inc. fruit





expressed LTP1 prom.)


weight


G988
1322
SCR (150-217, 277-
P5326 (floral meristem-
P4204
4270
Inc. brix




366, 371-444)
expressed AP1 prom.)





G991
1324
IAA (7-14, 48-59, 82-
P5297 (fruit tissue-
P5703
4402
Inc. lycopene




115, 128-164)
expressed PG prom.)





G993
1326
AP2 (69-134, 191-290)
P5324 (fruit vascular


Deep red fruit





tissue-expressed Cru








prom.)





G997
1328
MYB-related (9-59)
P5297 (fruit tissue-
P7039
4505
Inc. brix





expressed PG prom.)





G999
1330
MYB-(R1)R2R3 (28-
P5297 (fruit tissue-
P8150
4648
Inc. lycopene




363)
expressed PG prom.)





G1004
2
AP2 (153-221)
P5297 (fruit tissue-
P4764
4350
Inc. fruit





expressed PG prom.)


weight


G1006
4
AP2 (113-177)
P5303 (fruit tissue-
P7145
4533
Inc. brix





expressed PD prom.)





G1006
4
AP2 (113-177)
P5324 (fruit vascular
P7145
4533
Inc. biomass





tissue-expressed Cru








prom.)





G1007
6
AP2 (23-90)
P5326 (floral meristem-
P4002
4243
Inc. lycopene





expressed AP1 prom.)





G1008
8
AP2 (96-163)
P5297 (fruit tissue-
P7040
4506
Inc. lycopene





expressed PG prom.)





G1014
10
ABI3/VP-1 (90-172)
P5318 (shoot apical
P9109
4783
Inc. fruit





meristem-expressed STM


weight





prom.)





G1018
12
ABI3/VP-1 (222-311)
P5318 (shoot apical
P8584
4706
Inc. fruit





meristem-expressed STM


weight





prom.)





G1021
14
PMR (NA)
P5297 (fruit tissue-
P4777
4356
Inc. brix





expressed PG prom.)





G1021
14
PMR (NA)
P5284 (leaf-expressed
P4777
4356
Inc. lycopene





RbcS3 prom.)





G1022
16
WRKY (281-340)
P5318 (shoot apical
P7865
4631
Inc. fruit





meristem-expressed STM


weight





prom.)





G1033
18
HMG (49-121)
P5326 (floral meristem-
P7786
4615
Inc. lycopene





expressed AP1 prom.)





G1048
20
bZIP (138-190)
P5324 (fruit vascular
P6435
4452
Inc. fruit





tissue-expressed Cru


weight





prom.)





G1048
20
bZIP (138-190)
P5326 (floral meristem-
P6435
4452
Inc. fruit





expressed AP1 prom.)


weight


G1053
22
bZIP (74-120)
P5318 (shoot apical
P3599
4197
Inc. lycopene





meristem-expressed STM








prom.)





G1057
24
bZIP (305-365)
P5284 (leaf-expressed
P6436
4453
Inc. lycopene





RbcS3 prom.)





G1062
26
HLH/MYC (300-357)
P5303 (fruit tissue-
P6854
4481
Inc. brix





expressed PD prom.)





G1065
28
DBP (101-210)
P5326 (floral meristem-
P3579
4192
Inc. fruit





expressed AP1 prom.)


weight


G1067
30
AT-hook (86-94, 95-
P5326 (floral meristem-
P7832
4621
Inc. brix




246)
expressed AP1 prom.)





G1067
30
AT-hook (86-94, 95-
P5326 (floral meristem-
P7832
4621
Inc. lycopene




246)
expressed AP1 prom.)





G1067
30
AT-hook (86-94, 95-
P5297 (fruit tissue-
P7832
4621
Inc. lycopene




246)
expressed PG prom.)





G1072
32
AT-hook (56-64, 123-
P5318 (shoot apical
P6160
4427
Inc. brix




238)
meristem-expressed STM








prom.)





G1076
34
AT-hook (82-90, 91-
P5284 (leaf-expressed
P7092
4520
Inc. lycopene




233)
RbcS3 prom.)





G1078
36
BZIPT2 (1-53, 440-550)
P5284 (leaf-expressed
P3580
4193
Inc. lycopene





RbcS3 prom.)





G1080
38
BZIPT2 (1-50)
P5297 (fruit tissue-
P6453
4459
Inc. brix





expressed PG prom.)





G1080
38
BZIPT2 (1-50)
P5318 (shoot apical
P6453
4459
Inc. brix





meristem-expressed STM








prom.)





G1080
38
BZIPT2 (1-50)
P5287 (epidermal tissue-
P6453
4459
Inc. lycopene





expressed LTP1 prom.)





G1084
40
BZIPT2 (1-53, 490-619)
P5318 (shoot apical
P4779
4357
Inc. lycopene





meristem-expressed STM








prom.)





G1089
42
BZIPT2 (425-500)
P5284 (leaf-expressed
P6421
4446
Inc. brix





RbcS3 prom.)





G1090
44
AP2 (17-84)
P5318 (shoot apical
P7093
4521
Inc. brix





meristem-expressed STM








prom.)





G1091
46
WRKY (262-319)
P5318 (shoot apical


Inc. fruit





meristem-expressed STM


weight





prom.)





G1091
46
WRKY (262-319)
P5284 (leaf-expressed


Inc. fruit





RbcS3 prom.)


weight


G1098
48
RING/C3H2C3 (10-
P5326 (floral meristem-
P8230
4667
Inc. fruit




29, 190-230, 255-
expressed AP1 prom.)


weight




262, 286-290)






G1098
48
RING/C3H2C3 (10-
P5297 (fruit tissue-
P8230
4667
Inc. fruit




29, 190-230, 255-
expressed PG prom.)


weight




262, 286-290)






G1113
50
RING/C3H2C3 (85-
P5310 (root-expressed
P8232
4668
Inc. lycopene




128)
RSI1 prom.)





G1113
50
RING/C3H2C3 (85-
P5297 (fruit tissue-
P8232
4668
Inc. fruit




128)
expressed PG prom.)


weight


G1127
52
AT-hook (102-110, 155-
P5297 (fruit tissue-
P4185
4264
Inc. fruit




162, 180-295)
expressed PG prom.)


weight


G1131
54
HLH/MYC (160-217)
P5297 (fruit tissue-
P3950
4225
Inc. lycopene





expressed PG prom.)





G1131
54
HLH/MYC (160-217)
P5326 (floral meristem-
P3950
4225
Inc. fruit





expressed AP1 prom.)


weight


G1133
56
HLH/MYC (260-317)
P5319 (emergent leaf
P7148
4534
Inc. brix





primordia-expressed AS1








prom.)





G1134
58
HLH/MYC (187-245)
P6506 (constitutive CaMv
P7112
4525
Inc. brix





35S prom.)





G1136
60
HLH/MYC (408-465)
P5287 (epidermal tissue-
P7769
4609
Inc. fruit





expressed LTP1 prom.)


weight


G1137
62
HLH/MYC (257-314)
P5297 (fruit tissue-
P3410
4184
Inc. brix





expressed PG prom.)





G1140
64
MADS (2-57)
P5326 (floral meristem-
P4765
4351
Inc. brix





expressed AP1 prom.)





G1141
66
AP2 (75-142)
P5284 (leaf-expressed
P7149
4535
Inc. brix





RbcS3 prom.)





G1141
66
AP2 (75-142)
P5326 (floral meristem-
P7149
4535
Inc. brix





expressed AP1 prom.)





G1141
66
AP2 (75-142)
P5319 (emergent leaf
P7149
4535
Inc. brix





primordia-expressed AS1








prom.)





G1141
66
AP2 (75-142)
P5297 (fruit tissue-
P7149
4535
Inc. lycopene





expressed PG prom.)





G1141
66
AP2 (75-142)
P5319 (emergent leaf
P7149
4535
Inc. lycopene





primordia-expressed AS1








prom.)





G1146
68
PAZ (886-896)
P6506 (constitutive CaMv
P7061
4509
Inc. brix





35S prom.)





G1146
68
PAZ (886-896)
P5297 (fruit tissue-
P7061
4509
Inc. brix





expressed PG prom.)





G1148
70
PAZ (770-807)
P5318 (shoot apical
P8627
4723
Inc. fruit





meristem-expressed STM


weight





prom.)





G1148
70
PAZ (770-807)
P5326 (floral meristem-
P8627
4723
Inc. fruit





expressed AP1 prom.)


weight


G1150
72
PAZ (887-907)
P5287 (epidermal tissue-


Inc. lycopene





expressed LTP1 prom.)





G1198
74
bZIP (173-223)
P5287 (epidermal tissue-
P4766
4352
Inc. fruit





expressed LTP1 prom.)


weight


G1211
76
MISC (123-179)
P5297 (fruit tissue-
P6173
4430
Inc. brix





expressed PG prom.)





G1211
76
MISC (123-179)
P5319 (emergent leaf
P6173
4430
Inc. brix





primordia-expressed AS1








prom.)





G1211
76
MISC (123-179)
P5324 (fruit vascular
P6173
4430
Inc. brix





tissue-expressed Cru








prom.)





G1216
78
BPF-1 (293-373, 464-
P5297 (fruit tissue-
P7850
4624
Inc. fruit




550)
expressed PG prom.)


weight


G1226
80
HLH/MYC (109-168)
P5284 (leaf-expressed
P3647
4208
Inc. lycopene





RbcS3 prom.)





G1228
82
HLH/MYC (172-231)
P5326 (floral meristem-
P3411
4185
Inc. lycopene





expressed AP1 prom.)





G1228
82
HLH/MYC (172-231)
P5297 (fruit tissue-
P3411
4185
Inc. lycopene





expressed PG prom.)





G1231
84
Z-C4HC3 (201-249)
P5318 (shoot apical
P7870
4634
Inc. lycopene





meristem-expressed STM








prom.)





G1233
86
Z-C4HC3 (192-240)
P5318 (shoot apical
P7152
4536
Inc. lycopene





meristem-expressed STM








prom.)





G1240
88
MISC (NA)
P5318 (shoot apical
P7153
4537
Inc. brix





meristem-expressed STM








prom.)





G1240
88
MISC (NA)
P5297 (fruit tissue-
P7153
4537
Inc. brix





expressed PG prom.)





G1243
90
SWI/SNF (185-
P5326 (floral meristem-
P3998
4242
Inc. fruit




377, 520-604, 842-
expressed AP1 prom.)


weight




891, 944-1005)






G1246
92
MYB-(R1)R2R3 (27-
P5303 (fruit tissue-
P6062
4423
Inc. fruit




139)
expressed PD prom.)


weight


G1247
94
MYB-(R1)R2R3 (18-
P5318 (shoot apical
P7737
4599
Inc. lycopene




141)
meristem-expressed STM








prom.)





G1249
96
CAAT (13-89)
P5318 (shoot apical
P3993
4240
Inc. brix





meristem-expressed STM








prom.)





G1256
98
Z-C2H2 (67-87, 143-
P5287 (epidermal tissue-
P8611
4715
Inc. fruit




163)
expressed LTP1 prom.)


weight


G1266
100
AP2 (79-147)
P5303 (fruit tissue-
P7154
4538
Inc. brix





expressed PD prom.)





G1272
102
PAZ (800-837)
P5297 (fruit tissue-
P4181
4263
Inc. lycopene





expressed PG prom.)





G1273
104
WRKY (163-218, 347-
P5326 (floral meristem-
P3994
4241
Inc. lycopene




403)
expressed AP1 prom.)





G1274
106
WRKY (110-166)
P5297 (fruit tissue-
P8239
4675
Inc. brix





expressed PG prom.)





G1275
108
WRKY (113-169)
P5287 (epidermal tissue-
P3412
4186
Inc. lycopene





expressed LTP1 prom.)





G1278
110
bZIP (230-328)
P5284 (leaf-expressed
P4780
4358
Inc. lycopene





RbcS3 prom.)





G1293
112
AKR (NA)
P5318 (shoot apical
P9114
4784
Inc. fruit





meristem-expressed STM


weight





prom.)





G1293
112
AKR (NA)
P5297 (fruit tissue-
P9114
4784
Inc. fruit





expressed PG prom.)


weight


G1293
112
AKR (NA)
P6506 (constitutive CaMv
P9114
4784
More





35S prom.)


trichomes


G1297
114
ENBP (77-124, 480-
P5297 (fruit tissue-
P8552
4698
Inc. fruit




795)
expressed PG prom.)


weight


G1303
116
Z-C4HC3 (187-235)
P5284 (leaf-expressed
P7871
4635
Inc. brix





RbcS3 prom.)





G1303
116
Z-C4HC3 (187-235)
P5318 (shoot apical
P7871
4635
Inc. brix





meristem-expressed STM








prom.)





G1303
116
Z-C4HC3 (187-235)
P5284 (leaf-expressed
P7871
4635
Inc. lycopene





RbcS3 prom.)





G1305
118
MYB-(R1)R2R3 (15-
P5326 (floral meristem-
P6207
4437
Inc. brix




118)
expressed AP1 prom.)





G1308
120
MYB-(R1)R2R3 (1-
P5287 (epidermal tissue-
P3830
4217
Inc. fruit




128)
expressed LTP1 prom.)


weight


G1309
122
MYB-(R1)R2R3 (13-
P5297 (fruit tissue-
P3413
4187
Inc. lycopene




115)
expressed PG prom.)





G1309
122
MYB-(R1)R2R3 (13-
P5287 (epidermal tissue-
P3413
4187
Inc. fruit




115)
expressed LTP1 prom.)


weight


G1313
124
MYB-(R1)R2R3 (32-
P5297 (fruit tissue-
P7462
4552
Inc. lycopene




135)
expressed PG prom.)





G1313
124
MYB-(R1)R2R3 (32-
P5326 (floral meristem-
P7462
4552
Inc. fruit




135)
expressed AP1 prom.)


weight


G1315
126
MYB-(R1)R2R3 (14-
P5326 (floral meristem-
P3832
4218
Inc. fruit




115)
expressed AP1 prom.)


weight


G1319
128
MYB-(R1)R2R3 (14-
P5318 (shoot apical
P4020
4246
Inc. fruit




114)
meristem-expressed STM


weight





prom.)





G1320
130
MYB-(R1)R2R3 (5-
P5287 (epidermal tissue-
P3834
4219
Inc. brix




108)
expressed LTP1 prom.)





G1324
132
MYB-(R1)R2R3 (20-
P5297 (fruit tissue-
P4914
4364
Inc. lycopene




118)
expressed PG prom.)





G1326
134
MYB-(R1)R2R3 (18-
P5287 (epidermal tissue-
P3417
4188
Inc. fruit




121)
expressed LTP1 prom.)


weight


G1335
136
Z-CLDSH (24-43, 131-
P6506 (constitutive CaMv
P5689
4399
Inc. brix




144, 185-203)
35S prom.)





G1335
136
Z-CLDSH (24-43, 131-
P5326 (floral meristem-
P5689
4399
Inc. brix




144, 185-203)
expressed AP1 prom.)





G1341
138
BZIPT2 (1-34, 288-398)
P5287 (epidermal tissue-
P8628
4724
Inc. lycopene





expressed LTP1 prom.)





G1349
140
Z-LSDlike (6-39)
P5287 (epidermal tissue-
P5692
4400
Inc. brix





expressed LTP1 prom.)





G1349
140
Z-LSDlike (6-39)
P5319 (emergent leaf
P5692
4400
Inc. brix





primordia-expressed AS1








prom.)





G1349
140
Z-LSDlike (6-39)
P5324 (fruit vascular
P5692
4400
Inc. brix





tissue-expressed Cru








prom.)





G1349
140
Z-LSDlike (6-39)
P5324 (fruit vascular
P5692
4400
Inc. lycopene





tissue-expressed Cru








prom.)





G1352
142
Z-C2H2 (108-129, 167-
P5310 (root-expressed
P9257
4818
Inc. lycopene




188)
RSI1 prom.)





G1352
142
Z-C2H2 (108-129, 167-
P5287 (epidermal tissue-
P9257
4818
Inc. fruit




188)
expressed LTP1 prom.)


weight


G1354
144
NAC (7-157)
P5297 (fruit tissue-
P3976
4235
Inc. brix





expressed PG prom.)





G1354
144
NAC (7-157)
P5326 (floral meristem-
P3976
4235
Inc. brix





expressed AP1 prom.)





G1354
144
NAC (7-157)
P5318 (shoot apical
P3976
4235
Inc. brix





meristem-expressed STM








prom.)





G1354
144
NAC (7-157)
P5310 (root-expressed
P3976
4235
Inc. lycopene





RSI1 prom.)





G1355
146
NAC (9-159)
P5287 (epidermal tissue-
P7864
4630
Inc. fruit





expressed LTP1 prom.)


weight


G1361
148
NAC (59-200)
P5297 (fruit tissue-
P7770
4610
Inc. brix





expressed PG prom.)





G1361
148
NAC (59-200)
P5326 (floral meristem-
P7770
4610
Inc. brix





expressed AP1 prom.)





G1364
150
CAAT (29-118)
P5287 (epidermal tissue-
P4357
4286
Inc. fruit





expressed LTP1 prom.)


weight


G1367
152
AT-hook (179-201, 262-
P5297 (fruit tissue-
P7184
4544
Inc. lycopene




285, 298-319, 335-357)
expressed PG prom.)





G1379
156
AP2 (18-85)
P5319 (emergent leaf
P6858
4483
Inc. brix





primordia-expressed AS1








prom.)





G1379
156
AP2 (18-85)
P5318 (shoot apical
P6858
4483
Inc. brix





meristem-expressed STM








prom.)





G1379
156
AP2 (18-85)
P5326 (floral meristem-
P6858
4483
Inc. brix





expressed AP1 prom.)





G1379
156
AP2 (18-85)
P5297 (fruit tissue-
P6858
4483
Inc. brix





expressed PG prom.)





G1382
160
WRKY (210-266, 385-
P5326 (floral meristem-
P9268
4821
Inc. fruit




437)
expressed AP1 prom.)


weight


G1382
160
WRKY (210-266, 385-
P5287 (epidermal tissue-
P9268
4821
Inc. fruit




437)
expressed LTP1 prom.)


weight


G1382
160
WRKY (210-266, 385-
P5318 (shoot apical
P9268
4821
Inc. fruit




437)
meristem-expressed STM


weight





prom.)





G1384
162
AP2 (127-194)
P5297 (fruit tissue-
P7479
4559
Inc. brix





expressed PG prom.)





G1384
162
AP2 (127-194)
P5284 (leaf-expressed
P7479
4559
Inc. brix





RbcS3 prom.)





G1389
164
TEO (30-87)
P5318 (shoot apical
P6866
4485
Inc. brix





meristem-expressed STM








prom.)





G1394
168
S1FA (13-63)
P5287 (epidermal tissue-
P6857
4482
Inc. brix





expressed LTP1 prom.)





G1394
168
S1FA (13-63)
P6506 (constitutive CaMv
P6857
4482
Inc. brix





35S prom.)





G1395
170
S1FA (1-72)
P5284 (leaf-expressed
P7157
4539
Inc. fruit





RbcS3 prom.)


weight


G1403
174
GF14 (16-61)
P5326 (floral meristem-


Inc. lycopene





expressed AP1 prom.)





G1410
176
HS (206-298)
P5287 (epidermal tissue-
P4771
4353
Inc. fruit





expressed LTP1 prom.)


weight


G1419
178
AP2 (69-137)
P6506 (constitutive CaMv
P3616
4201
Inc. lycopene





35S prom.)





G1421
180
AP2 (84-146)
P5326 (floral meristem-
P3631
4204
Inc. brix





expressed AP1 prom.)





G1421
180
AP2 (84-146)
P5319 (emergent leaf
P3631
4204
Inc. brix





primordia-expressed AS1








prom.)





G1421
180
AP2 (84-146)
P5287 (epidermal tissue-
P3631
4204
Inc. brix





expressed LTP1 prom.)





G1421
180
AP2 (84-146)
P5297 (fruit tissue-
P3631
4204
Inc. brix





expressed PG prom.)





G1421
180
AP2 (84-146)
P5318 (shoot apical
P3631
4204
Inc. brix





meristem-expressed STM








prom.)





G1421
180
AP2 (84-146)
P5287 (epidermal tissue-
P3631
4204
Inc. lycopene





expressed LTP1 prom.)





G1421
180
AP2 (84-146)
P5324 (fruit vascular
P3631
4204
Inc. lycopene





tissue-expressed Cru








prom.)





G1421
180
AP2 (84-146)
P5303 (fruit tissue-
P3631
4204
Inc. lycopene





expressed PD prom.)





G1421
180
AP2 (84-146)
P5284 (leaf-expressed
P3631
4204
Inc. lycopene





RbcS3 prom.)





G1421
180
AP2 (84-146)
P5297 (fruit tissue-
P3631
4204
Inc. lycopene





expressed PG prom.)





G1421
180
AP2 (84-146)
P5319 (emergent leaf
P3631
4204
Inc. lycopene





primordia-expressed AS1








prom.)





G1421
180
AP2 (84-146)
P5318 (shoot apical
P3631
4204
Inc. lycopene





meristem-expressed STM








prom.)





G1423
182
MADS (6-62)
P6506 (constitutive CaMv
P7511
4567
Inc. brix





35S prom.)





G1435
184
GARP (146-194)
P5326 (floral meristem-
P9116
4785
Inc. fruit





expressed AP1 prom.)


weight


G1437
186
GRF-like (59-150)
P5303 (fruit tissue-
P4918
4365
Inc. fruit





expressed PD prom.)


weight


G1437
186
GRF-like (59-150)
P5287 (epidermal tissue-
P4918
4365
Inc. fruit





expressed LTP1 prom.)


weight


G1437
186
GRF-like (59-150)
P5297 (fruit tissue-
P4918
4365
Inc. fruit





expressed PG prom.)


weight


G1438
188
GRF-like (16-124)
P6506 (constitutive CaMv
P3840
4220
Larger





35S prom.)


leaflets


G1439
190
GRF-like (133-239)
P5284 (leaf-expressed
P6019
4415
Inc. lycopene





RbcS3 prom.)





G1442
192
GRF-like (111-223)
P6506 (constitutive CaMv
P6050
4419
Large light





35S prom.)


green leaves


G1442
192
GRF-like (111-223)
P6506 (constitutive CaMv
P6050
4419
Rugulose





35S prom.)


leaves (small








wrinkles)


G1443
194
GRF-like (24-132)
P5284 (leaf-expressed
P3841
4221
Inc. fruit





RbcS3 prom.)


weight


G1451
198
ARF (22-357)
P5319 (emergent leaf
P8610
4714
Inc. fruit





primordia-expressed AS1


weight





prom.)





G1451
198
ARF (22-357)
P5318 (shoot apical
P8610
4714
Inc. fruit





meristem-expressed STM


weight





prom.)





G1451
198
ARF (22-357)
P5287 (epidermal tissue-
P8610
4714
Inc. fruit





expressed LTP1 prom.)


weight


G1456
200
NAC (NA)
P5318 (shoot apical
P3978
4236
Inc. fruit





meristem-expressed STM


weight





prom.)





G1460
204
NAC (NA)
P5284 (leaf-expressed
P4946
4367
Inc. brix





RbcS3 prom.)





G1462
206
NAC (14-273)
P5326 (floral meristem-
P4336
4280
Inc. lycopene





expressed AP1 prom.)





G1469
208
Z-C2H2 (11-31, 230-
P5297 (fruit tissue-
P8615
4717
Inc. fruit




250, 276-296)
expressed PG prom.)


weight


G1469
208
Z-C2H2 (11-31, 230-
P5318 (shoot apical
P8615
4717
Inc. fruit




250, 276-296)
meristem-expressed STM


weight





prom.)





G1469
208
Z-C2H2 (11-31, 230-
P5326 (floral meristem-
P8615
4717
Inc. fruit




250, 276-296)
expressed AP1 prom.)


weight


G1469
208
Z-C2H2 (11-31, 230-
P5287 (epidermal tissue-
P8615
4717
Inc. fruit




250, 276-296)
expressed LTP1 prom.)


weight


G1471
210
Z-C2H2 (49-70)
P5297 (fruit tissue-
P4375
4292
Inc. fruit





expressed PG prom.)


weight


G1471
210
Z-C2H2 (49-70)
P5287 (epidermal tissue-
P4375
4292
Inc. fruit





expressed LTP1 prom.)


weight


G1474
212
Z-C2H2 (41-68)
P5319 (emergent leaf
P7456
4549
Inc. fruit





primordia-expressed AS1


weight





prom.)





G1474
212
Z-C2H2 (41-68)
P5324 (fruit vascular
P7456
4549
Thick stems





tissue-expressed Cru








prom.)





G1478
214
Z-CO-like (32-76)
P5318 (shoot apical
P4378
4293
Inc. brix





meristem-expressed STM








prom.)





G1480
218
Z-CO-like (50-73, 92-
P5326 (floral meristem-
P5883
4408
Inc. fruit




116)
expressed AP1 prom.)


weight


G1487
220
GATA/Zn (251-276)
P5287 (epidermal tissue-
P9266
4819
Inc. fruit





expressed LTP1 prom.)


weight


G1487
220
GATA/Zn (251-276)
P5284 (leaf-expressed
P9266
4819
Inc. fruit





RbcS3 prom.)


weight


G1487
220
GATA/Zn (251-276)
P5318 (shoot apical
P9266
4819
Inc. fruit





meristem-expressed STM


weight





prom.)





G1488
222
GATA/Zn (221-246)
P5287 (epidermal tissue-
P9267
4820
Inc. fruit





expressed LTP1 prom.)


weight


G1488
222
GATA/Zn (221-246)
P5297 (fruit tissue-
P9267
4820
Inc. fruit





expressed PG prom.)


weight


G1488
222
GATA/Zn (221-246)
P5284 (leaf-expressed
P9267
4820
Inc. fruit





RbcS3 prom.)


weight


G1491
224
GARP (50-100)
P5287 (epidermal tissue-
P4583
4317
Inc. lycopene





expressed LTP1 prom.)





G1494
226
HLH/MYC (254-311)
P5284 (leaf-expressed
P4772
4354
Inc. lycopene





RbcS3 prom.)





G1498
228
HLH/MYC (281-338)
P5284 (leaf-expressed
P3952
4226
Inc. brix





RbcS3 prom.)





G1498
228
HLH/MYC (281-338)
P5326 (floral meristem-
P3952
4226
Inc. brix





expressed AP1 prom.)





G1505
232
GATA/Zn (NA)
P5318 (shoot apical
P4414
4303
Inc. lycopene





meristem-expressed STM








prom.)





G1506
234
GATA/Zn (7-33)
P5287 (epidermal tissue-
P4024
4248
Inc. fruit





expressed LTP1 prom.)


weight


G1506
234
GATA/Zn (7-33)
P5297 (fruit tissue-
P4024
4248
Inc. fruit





expressed PG prom.)


weight


G1510
236
GATA/Zn (230-263)
P5297 (fruit tissue-
P8244
4677
Inc. lycopene





expressed PG prom.)





G1517
238
RING/C3HC4 (312-
P5310 (root-expressed
P9147
4798
Inc. lycopene




349)
RSI1 prom.)





G1518
240
RING/C3HC4 (51-
P5287 (epidermal tissue-
P6449
4457
Inc. brix




93, 126-209, 374-670)
expressed LTP1 prom.)





G1518
240
RING/C3HC4 (51-
P5324 (fruit vascular
P6449
4457
Inc. fruit




93, 126-209, 374-670)
tissue-expressed Cru


weight





prom.)





G1521
242
RING/C3HC4 (39-80)
P5310 (root-expressed
P3652
4211
Inc. brix





RSI1 prom.)





G1521
242
RING/C3HC4 (39-80)
P5310 (root-expressed
P3652
4211
Inc. lycopene





RSI1 prom.)





G1527
244
RING/C3HC4 (129-
P5326 (floral meristem-
P9146
4797
Inc. fruit




166)
expressed AP1 prom.)


weight


G1530
246
RING/C3H2C3 (102-
P5287 (epidermal tissue-
P8233
4669
Inc. fruit




144)
expressed LTP1 prom.)


weight


G1530
246
RING/C3H2C3 (102-
P5319 (emergent leaf
P8233
4669
Inc. fruit




144)
primordia-expressed AS1


weight





prom.)





G1530
246
RING/C3H2C3 (102-
P5318 (shoot apical
P8233
4669
Inc. fruit




144)
meristem-expressed STM


weight





prom.)





G1530
246
RING/C3H2C3 (102-
P5297 (fruit tissue-
P8233
4669
Inc. fruit




144)
expressed PG prom.)


weight


G1531
248
RING/C3HC4 (41-77)
P5284 (leaf-expressed
P6473
4466
Inc. brix





RbcS3 prom.)





G1531
248
RING/C3HC4 (41-77)
P5324 (fruit vascular
P6473
4466
Inc. brix





tissue-expressed Cru








prom.)





G1531
248
RING/C3HC4 (41-77)
P5297 (fruit tissue-
P6473
4466
Inc. brix





expressed PG prom.)





G1535
250
HB (109-169)
P5287 (epidermal tissue-
P8616
4718
Inc. brix





expressed LTP1 prom.)





G1538
252
HB (66-126)
P5287 (epidermal tissue-
P3968
4231
Inc. lycopene





expressed LTP1 prom.)





G1540
256
HB (35-98)
P5326 (floral meristem-
P3423
4189
Inc. fruit





expressed AP1 prom.)


weight


G1540
256
HB (35-98)
P5318 (shoot apical
P3423
4189
Inc. fruit





meristem-expressed STM


weight





prom.)





G1543
258
HB (135-195)
P5284 (leaf-expressed
P3424
4190
Inc. brix





RbcS3 prom.)





G1543
258
HB (135-195)
P5284 (leaf-expressed
P3424
4190
Inc. lycopene





RbcS3 prom.)





G1549
260
HB (75-135)
P5287 (epidermal tissue-
P7720
4595
Inc. fruit





expressed LTP1 prom.)


weight


G1550
262
HB (NA)
P5319 (emergent leaf
P3970
4232
Inc. brix





primordia-expressed AS1








prom.)





G1551
264
HB (99-160)
P5319 (emergent leaf
P4575
4316
Inc. lycopene





primordia-expressed AS1








prom.)





G1551
264
HB (99-160)
P5284 (leaf-expressed
P4575
4316
Inc. fruit





RbcS3 prom.)


weight


G1553
266
ARF (20-351)
P5284 (leaf-expressed
P9057
4771
Inc. fruit





RbcS3 prom.)


weight


G1553
266
ARF (20-351)
P5326 (floral meristem-
P9057
4771
Inc. fruit





expressed AP1 prom.)


weight


G1553
266
ARF (20-351)
P5318 (shoot apical
P9057
4771
Inc. fruit





meristem-expressed STM


weight





prom.)





G1553
266
ARF (20-351)
P5287 (epidermal tissue-
P9057
4771
Inc. fruit





expressed LTP1 prom.)


weight


G1559
268
TH (55-154)
P5287 (epidermal tissue-
P7788
4617
Inc. brix





expressed LTP1 prom.)





G1559
268
TH (55-154)
P5297 (fruit tissue-
P7788
4617
Inc. lycopene





expressed PG prom.)





G1559
268
TH (55-154)
P5287 (epidermal tissue-
P7788
4617
Inc. lycopene





expressed LTP1 prom.)





G1592
276
HB (NA)
P5326 (floral meristem-
P4153
4257
Inc. fruit





expressed AP1 prom.)


weight


G1592
276
HB (NA)
P5318 (shoot apical
P4153
4257
Inc. fruit





meristem-expressed STM


weight





prom.)





G1634
278
MYB-related (29-
P5287 (epidermal tissue-
P7863
4629
Inc. brix




79, 131-179)
expressed LTP1 prom.)





G1635
280
MYB-related (56-102)
P5318 (shoot apical
P3606
4200
Inc. lycopene





meristem-expressed STM








prom.)





G1635
280
MYB-related (56-102)
P5287 (epidermal tissue-
P3606
4200
Inc. lycopene





expressed LTP1 prom.)





G1637
282
MYB-related (108-156)
P5318 (shoot apical
P6168
4429
Inc. brix





meristem-expressed STM








prom.)





G1638
284
MYB-related (27-
P5297 (fruit tissue-
P3843
4222
Inc. lycopene




77, 141-189)
expressed PG prom.)





G1640
286
MYB-(R1)R2R3 (14-
P5324 (fruit vascular
P3604
4199
Inc. lycopene




115)
tissue-expressed Cru








prom.)





G1642
288
MYB-(R1)R2R3 (NA)
P5324 (fruit vascular
P6893
4494
Inc. fruit





tissue-expressed Cru


weight





prom.)





G1646
290
CAAT (66-162)
P5297 (fruit tissue-
P7118
4526
Inc. fruit





expressed PG prom.)


weight


G1656
294
HLH/MYC (112-169)
P5326 (floral meristem-
P4156
4258
Inc. lycopene





expressed AP1 prom.)





G1657
296
DBP (56-97, 149-268)
P5319 (emergent leaf
P6184
4432
Inc. fruit





primordia-expressed AS1


weight





prom.)





G1659
298
DBP (17-116)
P5319 (emergent leaf
P4594
4320
Inc. lycopene





primordia-expressed AS1








prom.)





G1659
298
DBP (17-116)
P5318 (shoot apical
P4594
4320
Inc. lycopene





meristem-expressed STM








prom.)





G1659
298
DBP (17-116)
P5324 (fruit vascular
P4594
4320
Inc. lycopene





tissue-expressed Cru








prom.)





G1660
302
DBP (362-476)
P5297 (fruit tissue-


Inc. fruit





expressed PG prom.)


weight


G1660
302
DBP (362-476)
P5284 (leaf-expressed


Inc. fruit





RbcS3 prom.)


weight


G1660
302
DBP (362-476)
P5326 (floral meristem-


Inc. fruit





expressed AP1 prom.)


weight


G1665
304
HLH/MYC (NA)
P5297 (fruit tissue-
P4186
4265
Inc. lycopene





expressed PG prom.)





G1666
306
HLH/MYC (356-413)
P5318 (shoot apical
P4595
4321
Inc. fruit





meristem-expressed STM


weight





prom.)





G1666
306
HLH/MYC (356-413)
P5284 (leaf-expressed
P4595
4321
More





RbcS3 prom.)


anthocyanin


G1669
308
Z-CO-like (NA)
P5287 (epidermal tissue-
P5702
4401
Inc. brix





expressed LTP1 prom.)





G1670
312
NAC (15-198)
P5326 (floral meristem-
P4340
4281
Inc. fruit





expressed AP1 prom.)


weight


G1730
316
RING/C3H2C3 (103-
P5287 (epidermal tissue-
P8234
4670
Inc. brix




144)
expressed LTP1 prom.)





G1730
316
RING/C3H2C3 (103-
P5297 (fruit tissue-
P8234
4670
Inc. brix




144)
expressed PG prom.)





G1730
316
RING/C3H2C3 (103-
P5284 (leaf-expressed
P8234
4670
Inc. lycopene




144)
RbcS3 prom.)





G1730
316
RING/C3H2C3 (103-
P5287 (epidermal tissue-
P8234
4670
Inc. lycopene




144)
expressed LTP1 prom.)





G1736
318
RING/C3H2C3 (139-
P5297 (fruit tissue-
P8235
4671
Inc. lycopene




179)
expressed PG prom.)





G1736
318
RING/C3H2C3 (139-
P5284 (leaf-expressed
P8235
4671
Inc. lycopene




179)
RbcS3 prom.)





G1750
320
AP2 (115-177)
P5284 (leaf-expressed
P3963
4229
Inc. brix





RbcS3 prom.)





G1750
320
AP2 (115-177)
P5287 (epidermal tissue-
P3963
4229
Inc. brix





expressed LTP1 prom.)





G1750
320
AP2 (115-177)
P5319 (emergent leaf
P3963
4229
Inc. lycopene





primordia-expressed AS1








prom.)





G1750
320
AP2 (115-177)
P5324 (fruit vascular
P3963
4229
Inc. lycopene





tissue-expressed Cru








prom.)





G1751
322
AP2 (133-200)
P5318 (shoot apical
P4207
4272
Inc. brix





meristem-expressed STM








prom.)





G1751
322
AP2 (133-200)
P5284 (leaf-expressed
P4207
4272
Inc. lycopene





RbcS3 prom.)





G1751
322
AP2 (133-200)
P5297 (fruit tissue-
P4207
4272
Inc. leaf





expressed PG prom.)


dissection


G1751
322
AP2 (133-200)
P5297 (fruit tissue-
P4207
4272
Pale white





expressed PG prom.)


fruit at green








stage


G1752
324
AP2 (83-151)
P5287 (epidermal tissue-
P4390
4295
Inc. fruit





expressed LTP1 prom.)


weight


G1755
326
AP2 (71-133)
P5303 (fruit tissue-
P4407
4302
Inc. lycopene





expressed PD prom.)





G1757
328
WRKY (158-218)
P6506 (constitutive CaMv
P6412
4442
Inc. brix





35S prom.)





G1757
328
WRKY (158-218)
P5303 (fruit tissue-
P6412
4442
Inc. brix





expressed PD prom.)





G1757
328
WRKY (158-218)
P5284 (leaf-expressed
P6412
4442
Inc. brix





RbcS3 prom.)





G1758
330
WRKY (109-165)
P5318 (shoot apical
P9153
4800
Inc. fruit





meristem-expressed STM


weight





prom.)





G1758
330
WRKY (109-165)
P5326 (floral meristem-
P9153
4800
Inc. fruit





expressed AP1 prom.)


weight


G1758
330
WRKY (109-165)
P5287 (epidermal tissue-
P9153
4800
Inc. fruit





expressed LTP1 prom.)


weight


G1759
332
MADS (2-57)
P5297 (fruit tissue-
P4147
4256
Inc. brix





expressed PG prom.)





G1760
334
MADS (2-57)
P5318 (shoot apical
P3371
4180
Inc. fruit





meristem-expressed STM


weight





prom.)





G1763
336
AP2 (140-207)
P5303 (fruit tissue-
P7165
4542
Inc. fruit





expressed PD prom.)


weight


G1765
338
NAC (20-140)
P5297 (fruit tissue-
P4343
4283
Inc. brix





expressed PG prom.)





G1767
340
SCR (225-290, 355-
P5326 (floral meristem-
P4205
4271
Inc. lycopene




450, 453-528)
expressed AP1 prom.)





G1772
342
RING/C3HC4 (123-
P5310 (root-expressed
P8224
4664
Inc. fruit




176)
RSI1 prom.)


weight


G1774
344
RING/C3HC4 (128-
P6506 (constitutive CaMv
P6861
4484
Inc. brix




242)
35S prom.)





G1775
346
RING/C3HC4 (121-
P5318 (shoot apical
P7869
4633
Inc. brix




241)
meristem-expressed STM








prom.)





G1777
348
RING/C3HC4 (124-
P5297 (fruit tissue-
P6895
4495
Inc. brix




247)
expressed PG prom.)





G1781
350
CAAT (35-124)
P5318 (shoot apical
P4774
4355
Inc. brix





meristem-expressed STM








prom.)





G1781
350
CAAT (35-124)
P5284 (leaf-expressed
P4774
4355
Inc. fruit





RbcS3 prom.)


weight


G1786
352
MYB-(R1)R2R3 (NA)
P5326 (floral meristem-
P4037
4251
Inc. fruit





expressed AP1 prom.)


weight


G1786
352
MYB-(R1)R2R3 (NA)
P5318 (shoot apical
P4037
4251
Inc. fruit





meristem-expressed STM


weight





prom.)





G1789
354
MYB-related (12-62)
P5287 (epidermal tissue-
P4358
4287
Inc. lycopene





expressed LTP1 prom.)





G1797
358
MADS (1-57)
P5284 (leaf-expressed
P8673
4738
Inc. brix





RbcS3 prom.)





G1797
358
MADS (1-57)
P5284 (leaf-expressed
P8673
4738
Inc. lycopene





RbcS3 prom.)





G1800
360
AP2 (25-92)
P5287 (epidermal tissue-
P4209
4273
Inc. brix





expressed LTP1 prom.)





G1800
360
AP2 (25-92)
P5318 (shoot apical
P4209
4273
Inc. brix





meristem-expressed STM








prom.)





G1800
360
AP2 (25-92)
P5297 (fruit tissue-
P4209
4273
Inc. brix





expressed PG prom.)





G1804
362
bZIP (357-407)
P5287 (epidermal tissue-
P6416
4444
Inc. brix





expressed LTP1 prom.)





G1806
364
bZIP (165-225)
P5287 (epidermal tissue-
P6061
4422
Inc. brix





expressed LTP1 prom.)





G1807
366
bZIP (249-297)
P6506 (constitutive CaMv
P6415
4443
Inc. brix





35S prom.)





G1808
368
bZIP (140-200)
P5318 (shoot apical
P4601
4324
Inc. brix





meristem-expressed STM








prom.)





G1808
368
bZIP (140-200)
P6506 (constitutive CaMv
P4601
4324
Inc. lycopene





35S prom.)





G1809
370
bZIP (23-35, 68-147)
P5287 (epidermal tissue-
P3982
4238
Inc. lycopene





expressed LTP1 prom.)





G1811
372
ABI3/VP-1 (34-128)
P5284 (leaf-expressed
P5884
4409
Inc. lycopene





RbcS3 prom.)





G1812
374
PCOMB (32-365)
P5297 (fruit tissue-
P7789
4618
Inc. fruit





expressed PG prom.)


weight


G1812
374
PCOMB (32-365)
P5303 (fruit tissue-
P7789
4618
Inc. fruit





expressed PD prom.)


weight


G1812
374
PCOMB (32-365)
P5326 (floral meristem-
P7789
4618
Inc. fruit





expressed AP1 prom.)


weight


G1812
374
PCOMB (32-365)
P5319 (emergent leaf
P7789
4618
Inc. fruit





primordia-expressed AS1


weight





prom.)





G1819
376
CAAT (52-148)
P5326 (floral meristem-
P4039
4252
Inc. brix





expressed AP1 prom.)





G1821
378
CAAT (57-146)
P5297 (fruit tissue-
P4040
4253
Inc. lycopene





expressed PG prom.)





G1824
380
GARP (158-205)
P5287 (epidermal tissue-
P7446
4546
Inc. brix





expressed LTP1 prom.)





G1824
380
GARP (158-205)
P5297 (fruit tissue-
P7446
4546
Dark green





expressed PG prom.)


fruit


G1836
382
CAAT (24-110)
P5318 (shoot apical
P3603
4198
Inc. lycopene





meristem-expressed STM








prom.)





G1836
382
CAAT (24-110)
P5326 (floral meristem-
P3603
4198
Inc. lycopene





expressed AP1 prom.)





G1838
384
AP2 (230-304, 330-400)
P5284 (leaf-expressed
P6474
4467
Inc. brix





RbcS3 prom.)





G1839
386
AP2 (118-182)
P5297 (fruit tissue-
P4166
4260
Inc. lycopene





expressed PG prom.)





G1839
386
AP2 (118-182)
P6506 (constitutive CaMv
P4166
4260
Inc. lycopene





35S prom.)





G1842
388
MADS (2-57)
P5287 (epidermal tissue-
P7845
4623
Inc. brix





expressed LTP1 prom.)





G1842
388
MADS (2-57)
P5287 (epidermal tissue-
P7845
4623
Inc. lycopene





expressed LTP1 prom.)





G1843
390
MADS (2-57)
P6506 (constitutive CaMv
P4402
4300
Inc. lycopene





35S prom.)





G1844
392
MADS (2-57)
P5318 (shoot apical
P4403
4301
Inc. brix





meristem-expressed STM








prom.)





G1847
394
WRKY (141-200)
P5326 (floral meristem-
P8237
4673
Inc. fruit





expressed AP1 prom.)


weight


G1847
394
WRKY (141-200)
P5284 (leaf-expressed
P8237
4673
Inc. fruit





RbcS3 prom.)


weight


G1847
394
WRKY (141-200)
P5318 (shoot apical
P8237
4673
Inc. fruit





meristem-expressed STM


weight





prom.)





G1850
396
HS (59-150)
P5297 (fruit tissue-
P7867
4632
Inc. lycopene





expressed PG prom.)





G1850
396
HS (59-150)
P5326 (floral meristem-
P7867
4632
Inc. fruit





expressed AP1 prom.)


weight


G1855
398
AKR (102-613)
P5284 (leaf-expressed
P5886
4411
Inc. fruit





RbcS3 prom.)


weight


G1855
398
AKR (102-613)
P5318 (shoot apical
P5886
4411
Inc. fruit





meristem-expressed STM


weight





prom.)





G1855
398
AKR (102-613)
P5326 (floral meristem-
P5886
4411
Inc. fruit





expressed AP1 prom.)


weight


G1863
400
GRF-like (76-187)
P5297 (fruit tissue-
P4179
4262
Inc. lycopene





expressed PG prom.)





G1865
402
GRF-like (45-162)
P5326 (floral meristem-
P3645
4207
Inc. lycopene





expressed AP1 prom.)





G1881
404
Z-CO-like (5-28, 56-79)
P5284 (leaf-expressed
P6466
4463
Inc. brix





RbcS3 prom.)





G1881
404
Z-CO-like (5-28, 56-79)
P6506 (constitutive CaMv
P6466
4463
Inc. lycopene





35S prom.)





G1884
406
Z-Dof (43-71)
P5287 (epidermal tissue-
P4563
4314
Inc. lycopene





expressed LTP1 prom.)





G1888
408
Z-CO-like (2-33, 58-
P5297 (fruit tissue-
P4219
4275
Inc. lycopene




100)
expressed PG prom.)





G1888
408
Z-CO-like (2-33, 58-
P5326 (floral meristem-
P4219
4275
Inc. fruit




100)
expressed AP1 prom.)


weight


G1896
412
Z-Dof (43-85)
P5326 (floral meristem-
P4706
4331
Inc. brix





expressed AP1 prom.)





G1896
412
Z-Dof (43-85)
P5287 (epidermal tissue-
P4706
4331
Inc. brix





expressed LTP1 prom.)





G1896
412
Z-Dof (43-85)
P5303 (fruit tissue-
P4706
4331
Inc. brix





expressed PD prom.)





G1896
412
Z-Dof (43-85)
P5287 (epidermal tissue-
P4706
4331
Inc. lycopene





expressed LTP1 prom.)





G1896
412
Z-Dof (43-85)
P5303 (fruit tissue-
P4706
4331
Inc. biomass





expressed PD prom.)





G1898
414
Z-Dof (31-59)
P5297 (fruit tissue-
P4226
4277
Inc. brix





expressed PG prom.)





G1901
420
Z-Dof (NA)
P5319 (emergent leaf
P3972
4233
Inc. lycopene





primordia-expressed AS1








prom.)





G1903
422
Z-Dof (134-180)
P5287 (epidermal tissue-
P3617
4202
Inc. lycopene





expressed LTP1 prom.)





G1906
424
Z-Dof (19-47)
P5284 (leaf-expressed
P3975
4234
Inc. lycopene





RbcS3 prom.)





G1917
426
GATA/Zn (153-179)
P5318 (shoot apical
P4952
4368
Inc. lycopene





meristem-expressed STM








prom.)





G1918
428
RING/C3HC4 (26-164)
P5326 (floral meristem-
P4367
4291
Inc. fruit





expressed AP1 prom.)


weight


G1923
430
NAC (23-153)
P5326 (floral meristem-
P9167
4803
Inc. fruit





expressed AP1 prom.)


weight


G1925
432
NAC (6-150)
P5326 (floral meristem-
P6209
4438
Inc. brix





expressed AP1 prom.)





G1933
434
WRKY (205-263, 344-
P5318 (shoot apical
P7874
4637
Inc. brix




404)
meristem-expressed STM








prom.)





G1933
434
WRKY (205-263, 344-
P5297 (fruit tissue-
P7874
4637
Inc. brix




404)
expressed PG prom.)





G1933
434
WRKY (205-263, 344-
P5297 (fruit tissue-
P7874
4637
Inc. lycopene




404)
expressed PG prom.)





G1936
436
PCF (64-129)
P5297 (fruit tissue-
P4214
4274
Inc. brix





expressed PG prom.)





G1936
436
PCF (64-129)
P5284 (leaf-expressed
P4214
4274
Inc. lycopene





RbcS3 prom.)





G1944
440
AT-hook (89-97, 170-
P5326 (floral meristem-
P4146
4255
Inc. brix




285)
expressed AP1 prom.)





G1947
442
HS (19-110)
P5324 (fruit vascular
P4553
4311
Inc. biomass*





tissue-expressed Cru








prom.)





G1950
444
AKR (65-228)
P5318 (shoot apical
P3651
4210
Inc. lycopene





meristem-expressed STM








prom.)





G1950
444
AKR (65-228)
P5287 (epidermal tissue-
P3651
4210
Inc. lycopene





expressed LTP1 prom.)





G1950
444
AKR (65-228)
P5303 (fruit tissue-
P3651
4210
Inc. lycopene





expressed PD prom.)





G1957
446
ABI3/VP-1 (52-143)
P5318 (shoot apical
P7451
4547
Inc. brix





meristem-expressed STM








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5297 (fruit tissue-
P7451
4547
Inc. brix





expressed PG prom.)





G1957
446
ABI3/VP-1 (52-143)
P5319 (emergent leaf
P7451
4547
Inc. brix





primordia-expressed AS1








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5326 (floral meristem-
P7451
4547
Inc. brix





expressed AP1 prom.)





G1957
446
ABI3/VP-1 (52-143)
P5303 (fruit tissue-
P7451
4547
Inc. brix





expressed PD prom.)





G1957
446
ABI3/VP-1 (52-143)
P5324 (fruit vascular
P7451
4547
Inc. brix





tissue-expressed Cru








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5303 (fruit tissue-
P7451
4547
Inc. lycopene





expressed PD prom.)





G1957
446
ABI3/VP-1 (52-143)
P5319 (emergent leaf
P7451
4547
Inc. lycopene





primordia-expressed AS1








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5324 (fruit vascular
P7451
4547
Inc. lycopene





tissue-expressed Cru








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5326 (floral meristem-
P7451
4547
Inc. lycopene





expressed AP1 prom.)





G1957
446
ABI3/VP-1 (52-143)
P5318 (shoot apical
P7451
4547
Inc. lycopene





meristem-expressed STM








prom.)





G1957
446
ABI3/VP-1 (52-143)
P5297 (fruit tissue-
P7451
4547
Inc. lycopene





expressed PG prom.)





G1957
446
ABI3/VP-1 (52-143)
P5284 (leaf-expressed
P7451
4547
Inc. lycopene





RbcS3 prom.)





G1959
448
GARP (46-97)
P5284 (leaf-expressed
P4584
4318
Inc. fruit





RbcS3 prom.)


weight


G1965
450
Z-Dof (27-55)
P5287 (epidermal tissue-
P3960
4228
Inc. brix





expressed LTP1 prom.)





G1965
450
Z-Dof (27-55)
P5297 (fruit tissue-
P3960
4228
Inc. brix





expressed PG prom.)





G1965
450
Z-Dof (27-55)
P5326 (floral meristem-
P3960
4228
Inc. brix





expressed AP1 prom.)





G1969
452
Z-C2H2 (93-113, 129-
P5284 (leaf-expressed
P7762
4607
Inc. lycopene




152, 230-252)
RbcS3 prom.)





G1969
452
Z-C2H2 (93-113, 129-
P5297 (fruit tissue-
P7762
4607
Inc. lycopene




152, 230-252)
expressed PG prom.)





G1969
452
Z-C2H2 (93-113, 129-
P5310 (root-expressed
P7762
4607
Inc. lycopene




152, 230-252)
RSI1 prom.)





G1969
452
Z-C2H2 (93-113, 129-
P5326 (floral meristem-
P7762
4607
Inc. fruit




152, 230-252)
expressed AP1 prom.)


weight


G1969
452
Z-C2H2 (93-113, 129-
P5318 (shoot apical
P7762
4607
Inc. fruit




152, 230-252)
meristem-expressed STM


weight





prom.)





G1972
454
Z-C2H2 (79-101, 132-
P5284 (leaf-expressed
P8504
4690
Inc. brix




152, 342-364, 411-433)
RbcS3 prom.)





G1972
454
Z-C2H2 (79-101, 132-
P5310 (root-expressed
P8504
4690
Inc. brix




152, 342-364, 411-433)
RSI1 prom.)





G1972
454
Z-C2H2 (79-101, 132-
P5310 (root-expressed
P8504
4690
Inc. lycopene




152, 342-364, 411-433)
RSI1 prom.)





G1981
456
Z-C3H (45-157)
P5318 (shoot apical
P8492
4687
Inc. fruit





meristem-expressed STM


weight





prom.)





G1981
456
Z-C3H (45-157)
P5284 (leaf-expressed
P8492
4687
Inc. fruit





RbcS3 prom.)


weight


G1987
458
Z-C2H2 (103-123)
P5284 (leaf-expressed


Inc. lycopene





RbcS3 prom.)





G1987
458
Z-C2H2 (103-123)
P5318 (shoot apical


Inc. fruit





meristem-expressed STM


weight





prom.)





G1990
460
Z-C2H2 (184-204, 261-
P5310 (root-expressed
P8692
4746
Inc. lycopene




283)
RSI1 prom.)





G1990
460
Z-C2H2 (184-204, 261-
P5287 (epidermal tissue-
P8692
4746
Inc. lycopene




283)
expressed LTP1 prom.)





G1990
460
Z-C2H2 (184-204, 261-
P5297 (fruit tissue-
P8692
4746
Inc. lycopene




283)
expressed PG prom.)





G1991
462
Z-C2H2 (6-26, 175-
P5284 (leaf-expressed
P8151
4649
Inc. brix




195, 224-226)
RbcS3 prom.)





G2005
468
Z-Dof (29-71)
P5326 (floral meristem-
P7557
4580
Inc. brix





expressed AP1 prom.)





G2005
468
Z-Dof (29-71)
P5318 (shoot apical
P7557
4580
Inc. brix





meristem-expressed STM








prom.)





G2006
470
MYB-(R1)R2R3 (NA)
P5284 (leaf-expressed
P6455
4460
Inc. brix





RbcS3 prom.)





G2007
472
MYB-(R1)R2R3 (14-
P5310 (root-expressed
P4400
4299
Inc. lycopene




118)
RSI1 prom.)





G2011
474
HS (55-146)
P5326 (floral meristem-
P6903
4498
Inc. fruit





expressed AP1 prom.)


weight


G2011
474
HS (55-146)
P5318 (shoot apical
P6903
4498
Inc. fruit





meristem-expressed STM


weight





prom.)





G2011
474
HS (55-146)
P5319 (emergent leaf
P6903
4498
Inc. fruit





primordia-expressed AS1


weight





prom.)





G2015
476
AKR (131-454)
P5284 (leaf-expressed
P7465
4554
Inc. brix





RbcS3 prom.)





G2015
476
AKR (131-454)
P5287 (epidermal tissue-
P7465
4554
Inc. brix





expressed LTP1 prom.)





G2018
478
AKR (101-416)
P5287 (epidermal tissue-
P7582
4587
Inc. lycopene





expressed LTP1 prom.)





G2020
480
AKR (122-486)
P5324 (fruit vascular
P7458
4550
Inc. brix





tissue-expressed Cru








prom.)





G2020
480
AKR (122-486)
P6506 (constitutive CaMv
P7458
4550
Inc. brix





35S prom.)





G2020
480
AKR (122-486)
P5287 (epidermal tissue-
P7458
4550
Inc. brix





expressed LTP1 prom.)





G2020
480
AKR (122-486)
P5303 (fruit tissue-
P7458
4550
Inc. brix





expressed PD prom.)





G2020
480
AKR (122-486)
P5297 (fruit tissue-
P7458
4550
Inc. lycopene





expressed PG prom.)





G2020
480
AKR (122-486)
P5303 (fruit tissue-
P7458
4550
Inc. lycopene





expressed PD prom.)





G2020
480
AKR (122-486)
P5303 (fruit tissue-
P7458
4550
Inc. fruit





expressed PD prom.)


weight


G2053
484
NAC (6-152)
P5297 (fruit tissue-
P4738
4339
Inc. brix





expressed PG prom.)





G2053
484
NAC (6-152)
P5297 (fruit tissue-
P4738
4339
Inc. lycopene





expressed PG prom.)





G2057
486
TEO (46-103)
P5297 (fruit tissue-
P3983
4239
Inc. fruit





expressed PG prom.)


weight


G2059
488
AP2 (184-251)
P5326 (floral meristem-
P6463
4462
Inc. brix





expressed AP1 prom.)





G2059
488
AP2 (184-251)
P5297 (fruit tissue-
P6463
4462
Inc. brix





expressed PG prom.)





G2061
492
MADS (1-57)
P5310 (root-expressed
P7756
4605
Inc. lycopene





RSI1 prom.)





G2062
494
MADS (8-63)
P5287 (epidermal tissue-
P4392
4296
Inc. fruit





expressed LTP1 prom.)


weight


G2063
496
MADS (7-63)
P5284 (leaf-expressed
P7464
4553
Inc. fruit





RbcS3 prom.)


weight


G2068
498
bZIP (338-455)
P5310 (root-expressed
P8586
4708
Inc. lycopene





RSI1 prom.)





G2071
500
bZIP (307-358)
P5310 (root-expressed


Inc. lycopene





RSI1 prom.)





G2072
502
bZIP (90-149)
P5319 (emergent leaf
P4603
4325
Inc. lycopene





primordia-expressed AS1








prom.)





G2084
504
RING/C3HC4 (41-172)
P5319 (emergent leaf
P6896
4496
Inc. fruit





primordia-expressed AS1


weight





prom.)





G2084
504
RING/C3HC4 (41-172)
P5319 (emergent leaf
P6896
4496
Inc. biomass





primordia-expressed AS1








prom.)





G2085
506
GATA/Zn (214-241)
P5326 (floral meristem-


Inc. fruit





expressed AP1 prom.)


weight


G2085
506
GATA/Zn (214-241)
P5287 (epidermal tissue-


Inc. fruit





expressed LTP1 prom.)


weight


G2086
508
RING/C3HC4 (83-131)
P5284 (leaf-expressed
P4348
4284
Inc. lycopene





RbcS3 prom.)





G2092
512
RING/C3HC4 (176-
P5318 (shoot apical
P8226
4666
Inc. fruit




208)
meristem-expressed STM


weight





prom.)





G2094
514
GATA/Zn (43-68)
P5284 (leaf-expressed
P7074
4512
Inc. fruit





RbcS3 prom.)


weight


G2105
520
TH (100-153)
P5297 (fruit tissue-
P6877
4490
Inc. brix





expressed PG prom.)





G2107
522
AP2 (27-94)
P5287 (epidermal tissue-
P7170
4543
Inc. fruit





expressed LIP1 prom.)


weight


G2108
524
AP2 (18-85)
P5297 (fruit tissue-
P4196
4268
Inc. lycopene





expressed PG prom.)





G2108
524
AP2 (18-85)
P5324 (fruit vascular
P4196
4268
Inc. lycopene





tissue-expressed Cru








prom.)





G2109
526
MADS (1-57)
P5284 (leaf-expressed
P7509
4566
Inc. brix





RbcS3 prom.)





G2109
526
MADS (1-57)
P5326 (floral meristem-
P7509
4566
Inc. fruit





expressed AP1 prom.)


weight


G2116
530
bZIP (150-210)
P6506 (constitutive CaMv
P4605
4326
Inc. lycopene





35S prom.)





G2116
530
bZIP (150-210)
P5297 (fruit tissue-
P4605
4326
Inc. lycopene





expressed PG prom.)





G2117
532
bZIP (46-106)
P5326 (floral meristem-
P4606
4327
Inc. brix





expressed AP1 prom.)





G2117
532
bZIP (46-106)
P5326 (floral meristem-
P4606
4327
Inc. brix





expressed AP1 prom.)





G2117
532
bZIP (46-106)
P5284 (leaf-expressed
P4606
4327
Inc. fruit





RbcS3 prom.)


weight


G2121
534
VAR (130-226)
P5303 (fruit tissue-
P6199
4435
Inc. brix





expressed PD prom.)





G2121
534
VAR (130-226)
P5318 (shoot apical
P6199
4435
Inc. brix





meristem-expressed STM








prom.)





G2129
536
bZIP (71-140)
P5303 (fruit tissue-
P7539
4577
Inc. brix





expressed PD prom.)





G2130
538
AP2 (101-169)
P5326 (floral meristem-
P6056
4421
Inc. fruit





expressed AP1 prom.)


weight


G2130
538
AP2 (101-169)
P5287 (epidermal tissue-
P6056
4421
Inc. fruit





expressed LTP1 prom.)


weight


G2130
538
AP2 (101-169)
P5297 (fruit tissue-
P6056
4421
Inc. fruit





expressed PG prom.)


weight


G2130
538
AP2 (101-169)
P5318 (shoot apical
P6056
4421
Inc. fruit





meristem-expressed STM


weight





prom.)





G2132
540
AP2 (84-151)
P5297 (fruit tissue-
P4229
4278
Inc. lycopene





expressed PG prom.)





G2135
542
AP2 (73-140)
P5287 (epidermal tissue-
P4363
4289
Inc. brix





expressed LTP1 prom.)





G2135
542
AP2 (73-140)
P5287 (epidermal tissue-
P4363
4289
Inc. fruit





expressed LTP1 prom.)


weight


G2139
544
MADS (14-69)
P5287 (epidermal tissue-
P6884
4491
Inc. lycopene





expressed LTP1 prom.)





G2139
544
MADS (14-69)
P5318 (shoot apical
P6884
4491
Inc. fruit





meristem-expressed STM


weight





prom.)





G2141
546
HLH/MYC (306-364)
P5297 (fruit tissue-
P4753
4344
Inc. brix





expressed PG prom.)





G2141
546
HLH/MYC (306-364)
P5297 (fruit tissue-
P4753
4344
Inc. lycopene





expressed PG prom.)





G2144
548
HLH/MYC (207-265)
P5284 (leaf-expressed
P4597
4322
Inc. brix





RbcS3 prom.)





G2145
550
HLH/MYC (170-227)
P5284 (leaf-expressed
P4754
4345
Inc. lycopene





RbcS3 prom.)





G2147
552
HLH/MYC (163-220)
P5287 (epidermal tissue-
P4574
4315
Inc. brix





expressed LTP1 prom.)





G2147
552
HLH/MYC (163-220)
P5287 (epidermal tissue-
P4574
4315
Inc. lycopene





expressed LTP1 prom.)





G2148
554
HLH/MYC (135-192)
P5318 (shoot apical
P7877
4638
Inc. brix





meristem-expressed STM








prom.)





G2148
554
HLH/MYC (135-192)
P5318 (shoot apical
P7877
4638
Inc. lycopene





meristem-expressed STM








prom.)





G2150
556
HLH/MYC (194-252)
P6506 (constitutive CaMv
P4598
4323
Inc. lycopene





35S prom.)





G2154
558
AT-hook (105-113, 171-
P5324 (fruit vascular
P6196
4433
Inc. brix




283)
tissue-expressed Cru








prom.)





G2156
560
AT-hook (72-80, 81-
P5297 (fruit tissue-
P4418
4304
Inc. brix




232)
expressed PG prom.)





G2156
560
AT-hook (72-80, 81-
P5319 (emergent leaf
P4418
4304
Inc. fruit




232)
primordia-expressed AS1


weight





prom.)





G2156
560
AT-hook (72-80, 81-
P5303 (fruit tissue-
P4418
4304
Inc. fruit




232)
expressed PD prom.)


weight


G2157
562
AT-hook (88-96, 97-
P5287 (epidermal tissue-
P4419
4305
Inc. lycopene




240)
expressed LTP1 prom.)





G2213
572
bZIP-NIN (156-205)
P5297 (fruit tissue-
P7541
4578
Inc. brix





expressed PG prom.)





G2215
574
bZIP-NIN (150-246)
P5284 (leaf-expressed
P4608
4328
Inc. brix





RbcS3 prom.)





G2223
578
RING/C3H2C3 (338-
P5318 (shoot apical
P8256
4684
Inc. fruit




378)
meristem-expressed STM


weight





prom.)





G2226
580
RING/C3H2C3 (103-
P5297 (fruit tissue-
P8236
4672
Inc. lycopene




144)
expressed PG prom.)





G2237
582
RING/C3H2C3 (127-
P5284 (leaf-expressed
P8247
4678
Inc. lycopene




168)
RbcS3 prom.)





G2238
584
RING/C3H2C3 (113-
P5284 (leaf-expressed
P8248
4679
Inc. brix




154)
RbcS3 prom.)





G2238
584
RING/C3H2C3 (113-
P5284 (leaf-expressed
P8248
4679
Inc. lycopene




154)
RbcS3 prom.)





G2238
584
RING/C3H2C3 (113-
P5310 (root-expressed
P8248
4679
Inc. lycopene




154)
RSI1 prom.)





G2239
586
RING/C3H2C3 (128-
P5287 (epidermal tissue-
P8588
4710
Inc. fruit




169)
expressed LTP1 prom.)


weight


G2251
590
RING/C3H2C3 (89-
P5297 (fruit tissue-
P8249
4680
Inc. fruit




132)
expressed PG prom.)


weight


G2251
590
RING/C3H2C3 (89-
P5326 (floral meristem-
P8249
4680
Inc. fruit




132)
expressed AP1 prom.)


weight


G2251
590
RING/C3H2C3 (89-
P5318 (shoot apical
P8249
4680
Inc. fruit




132)
meristem-expressed STM


weight





prom.)





G2251
590
RING/C3H2C3 (89-
P5287 (epidermal tissue-
P8249
4680
Inc. fruit




132)
expressed LTP1 prom.)


weight


G2251
590
RING/C3H2C3 (89-
P5284 (leaf-expressed
P8249
4680
Inc. fruit




132)
RbcS3 prom.)


weight


G2252
592
RING/C3H2C3 (257-
P5310 (root-expressed
P8250
4681
Inc. fruit




297)
RSI1 prom.)


weight


G2269
594
RING/C3H2C3 (136-
P5310 (root-expressed
P8252
4682
Inc. lycopene




177)
RSI1 prom.)





G2269
594
RING/C3H2C3 (136-
P5287 (epidermal tissue-
P8252
4682
Inc. fruit




177)
expressed LTP1 prom.)


weight


G2269
594
RING/C3H2C3 (136-
P5297 (fruit tissue-
P8252
4682
Inc. fruit




177)
expressed PG prom.)


weight


G2269
594
RING/C3H2C3 (136-
P5326 (floral meristem-
P8252
4682
Inc. fruit




177)
expressed AP1 prom.)


weight


G2269
594
RING/C3H2C3 (136-
P5318 (shoot apical
P8252
4682
Inc. fruit




177)
meristem-expressed STM


weight





prom.)





G2290
600
WRKY (147-205)
P5297 (fruit tissue-
P4742
4341
Inc. brix





expressed PG prom.)





G2290
600
WRKY (147-205)
P6506 (constitutive CaMv
P4742
4341
Chlorotic





35S prom.)





G2291
602
AP2 (113-180)
P5287 (epidermal tissue-
P7125
4529
Inc. brix





expressed LTP1 prom.)





G2291
602
AP2 (113-180)
P5324 (fruit vascular
P7125
4529
Inc. brix





tissue-expressed Cru








prom.)





G2291
602
AP2 (113-180)
P5318 (shoot apical
P7125
4529
Inc. fruit





meristem-expressed STM


weight





prom.)





G2293
604
WRKY (74-134)
P5324 (fruit vascular
P6213
4440
Inc. fruit





tissue-expressed Cru


weight





prom.)





G2295
606
MADS (1-57)
P5284 (leaf-expressed
P7859
4626
Inc. brix





RbcS3 prom.)





G2296
608
WRKY (85-145)
P5319 (emergent leaf
P4741
4340
Inc. brix





primordia-expressed AS1








prom.)





G2296
608
WRKY (85-145)
P5324 (fruit vascular
P4741
4340
Inc. brix





tissue-expressed Cru








prom.)





G2296
608
WRKY (85-145)
P5284 (leaf-expressed
P4741
4340
Inc. lycopene





RbcS3 prom.)





G2299
610
AP2 (48-115)
P5318 (shoot apical
P6211
4439
Inc. brix





meristem-expressed STM








prom.)





G2304
612
AKR (381-886)
P5287 (epidermal tissue-
P8209
4659
Inc. fruit





expressed LTP1 prom.)


weight


G2313
614
MYB-related (111-159)
P5297 (fruit tissue-
P4382
4294
Inc. brix





expressed PG prom.)





G2313
614
MYB-related (111-159)
P5319 (emergent leaf
P4382
4294
Inc. lycopene





primordia-expressed AS1








prom.)





G2313
614
MYB-related (111-159)
P5297 (fruit tissue-
P4382
4294
Inc. fruit





expressed PG prom.)


weight


G2315
616
PMR (4-60)
P5326 (floral meristem-
P7723
4596
Inc. lycopene





expressed AP1 prom.)





G2316
618
PMR (96-282)
P5287 (epidermal tissue-
P7078
4513
Inc. lycopene





expressed LTP1 prom.)





G2318
620
MYB-related (134-182)
P5318 (shoot apical
P5885
4410
Inc. brix





meristem-expressed STM








prom.)





G2318
620
MYB-related (134-182)
P5310 (root-expressed
P5885
4410
Inc. lycopene





RSI1 prom.)





G2334
624
GRF-like (82-194)
P5310 (root-expressed
P8694
4747
Inc. lycopene





RSI1 prom.)





G2342
626
MYB-(R1)R2R3 (75-
P5326 (floral meristem-
P7872
4636
Inc. fruit




179)
expressed AP1 prom.)


weight


G2343
628
MYB-(R1)R2R3 (14-
P5297 (fruit tissue-
P9162
4801
Inc. fruit




116)
expressed PG prom.)


weight


G2344
630
CAAT (100-159)
P5287 (epidermal tissue-
P6063
4424
Inc. fruit





expressed LTP1 prom.)


weight


G2371
636
ABI3/VP-1 (25-127)
P5326 (floral meristem-
P8070
4639
Inc. brix





expressed AP1 prom.)





G2371
636
ABI3/VP-1 (25-127)
P5287 (epidermal tissue-
P8070
4639
Inc. lycopene





expressed LTP1 prom.)





G2373
638
TH (290-350)
P5326 (floral meristem-
P4609
4329
Inc. lycopene





expressed AP1 prom.)





G2376
640
TH (79-178, 336-408)
P5287 (epidermal tissue-
P4610
4330
Inc. brix





expressed LTP1 prom.)





G2376
640
TH (79-178, 336-408)
P5287 (epidermal tissue-
P4610
4330
Inc. lycopene





expressed LTP1 prom.)





G2376
640
TH (79-178, 336-408)
P5297 (fruit tissue-
P4610
4330
Inc. lycopene





expressed PG prom.)





G2376
640
TH (79-178, 336-408)
P5318 (shoot apical
P4610
4330
Inc. lycopene





meristem-expressed STM








prom.)





G2376
640
TH (79-178, 336-408)
P5319 (emergent leaf
P4610
4330
Inc. lycopene





primordia-expressed AS1








prom.)





G2377
642
TH (17-110, 153-237)
P5318 (shoot apical
P7485
4560
Inc. fruit





meristem-expressed STM


weight





prom.)





G2394
646
RING/C3H2C3 (355-
P5310 (root-expressed
P9030
4767
Inc. lycopene




395)
RSI1 prom.)





G2400
648
RING/C3H2C3 (158-
P5287 (epidermal tissue-
P8255
4683
Inc. fruit




198)
expressed LTP1 prom.)


weight


G2417
652
GARP (235-285)
P5287 (epidermal tissue-
P4394
4297
Inc. lycopene





expressed LTP1 prom.)





G2421
656
MYB-(R1)R2R3 (9-
P5318 (shoot apical
P7844
4622
Inc. brix




110)
meristem-expressed STM








prom.)





G2421
656
MYB-(R1)R2R3 (9-
P5318 (shoot apical
P7844
4622
Inc. lycopene




110)
meristem-expressed STM








prom.)





G2422
658
MYB-(R1)R2R3 (9-
P5310 (root-expressed
P9164
4802
Inc. lycopene




110)
RSI1 prom.)





G2422
658
MYB-(R1)R2R3 (9-
P5318 (shoot apical
P9164
4802
Inc. fruit




110)
meristem-expressed STM


weight





prom.)





G2425
660
MYB-(R1)R2R3 (12-
P5284 (leaf-expressed
P4396
4298
Inc. brix




119)
RbcS3 prom.)





G2426
662
MYB-(R1)R2R3 (14-
P5297 (fruit tissue-
P6478
4468
Inc. brix




114)
expressed PG prom.)





G2427
664
MYB-(R1)R2R3 (90-
P5284 (leaf-expressed
P4724
4336
Inc. brix




244)
RbcS3 prom.)





G2437
668
GATA/Zn (223-250)
P5310 (root-expressed
P9274
4823
Inc. lycopene





RSI1 prom.)





G2437
668
GATA/Zn (223-250)
P5326 (floral meristem-
P9274
4823
Inc. fruit





expressed AP1 prom.)


weight


G2452
672
MYB-related (28-
P5297 (fruit tissue-
P6206
4436
Inc. brix




79, 146-194)
expressed PG prom.)





G2454
674
YABBY (25-64, 136-
P5326 (floral meristem-
P8594
4711
Inc. fruit




183)
expressed AP1 prom.)


weight


G2457
676
YABBY (21-59, 110-
P5318 (shoot apical
P8560
4700
Inc. fruit




157)
meristem-expressed STM


weight





prom.)





G2457
676
YABBY (21-59, 110-
P5284 (leaf-expressed
P8560
4700
Inc. fruit




157)
RbcS3 prom.)


weight


G2462
680
E2F (126-350)
P5287 (epidermal tissue-
P7783
4613
Inc. fruit





expressed LTP1 prom.)


weight


G2484
682
Z-C4HC3 (202-250)
P5318 (shoot apical
P7094
4522
Inc. brix





meristem-expressed STM








prom.)





G2484
682
Z-C4HC3 (202-250)
P5319 (emergent leaf
P7094
4522
Inc. brix





primordia-expressed AS1








prom.)





G2499
684
SWI/SNF (209-
P5326 (floral meristem-
P8561
4701
Inc. fruit




414, 618-701)
expressed AP1 prom.)


weight


G2505
686
NAC (9-137)
P5284 (leaf-expressed
P4342
4282
Inc. lycopene





RbcS3 prom.)





G2510
688
AP2 (42-109)
P5284 (leaf-expressed
P6906
4499
Inc. brix





RbcS3 prom.)





G2510
688
AP2 (42-109)
P6506 (constitutive CaMv
P6906
4499
Waxy leaves





35S prom.)





G2519
690
HLH/MYC (1-54)
P6506 (constitutive CaMv
P6875
4489
Inc. brix





35S prom.)





G2535
692
NAC (11-114)
P5318 (shoot apical
P4521
4306
Inc. brix





meristem-expressed STM








prom.)





G2546
694
HB (349-413)
P5297 (fruit tissue-
P4592
4319
Inc. brix





expressed PG prom.)





G2550
698
HB (345-408)
P5326 (floral meristem-
P8728
4753
Inc. fruit





expressed AP1 prom.)


weight


G2552
700
HLH/MYC (124-181)
P5319 (emergent leaf
P4757
4346
Inc. biomass





primordia-expressed AS1








prom.)





G2553
702
HLH/MYC (538-598)
P5297 (fruit tissue-
P7527
4573
Inc. lycopene





expressed PG prom.)





G2554
704
HLH/MYC (338-398)
P5326 (floral meristem-
P7576
4586
Inc. fruit





expressed AP1 prom.)


weight


G2554
704
HLH/MYC (338-398)
P5287 (epidermal tissue-
P7576
4586
Inc. fruit





expressed LTP1 prom.)


weight


G2555
706
HLH/MYC (184-242)
P5284 (leaf-expressed
P7103
4523
Inc. lycopene





RbcS3 prom.)





G2555
706
HLH/MYC (184-242)
P5318 (shoot apical
P7103
4523
Inc. fruit





meristem-expressed STM


weight





prom.)





G2555
706
HLH/MYC (184-242)
P6506 (constitutive CaMv
P7103
4523
Inc. biomass





35S prom.)





G2556
708
HLH/MYC (546-606)
P5310 (root-expressed
P8720
4750
Inc. brix





RSI1 prom.)





G2556
708
HLH/MYC (546-606)
P5297 (fruit tissue-
P8720
4750
Inc. fruit





expressed PG prom.)


weight


G2556
708
HLH/MYC (546-606)
P5287 (epidermal tissue-
P8720
4750
Inc. fruit





expressed LTP1 prom.)


weight


G2573
710
AP2 (31-98)
P5284 (leaf-expressed
P4715
4332
Inc. brix





RbcS3 prom.)





G2573
710
AP2 (31-98)
P5284 (leaf-expressed
P4715
4332
Inc. lycopene





RbcS3 prom.)





G2574
712
WRKY (225-284)
P5310 (root-expressed
P7507
4564
Inc. brix





RSI1 prom.)





G2575
714
WRKY (137-192)
P5326 (floral meristem-
P8238
4674
Inc. fruit





expressed AP1 prom.)


weight


G2575
714
WRKY (137-192)
P5318 (shoot apical
P8238
4674
Inc. fruit





meristem-expressed STM


weight





prom.)





G2575
714
WRKY (137-192)
P5284 (leaf-expressed
P8238
4674
Inc. fruit





RbcS3 prom.)


weight


G2577
716
AP2 (208-281, 307-375)
P5310 (root-expressed
P8647
4729
Inc. brix





RSI1 prom.)





G2577
716
AP2 (208-281, 307-375)
P5318 (shoot apical
P8647
4729
Inc. brix





meristem-expressed STM








prom.)





G2579
718
AP2 (52-119)
P5287 (epidermal tissue-
P9029
4766
Inc. fruit





expressed LTP1 prom.)


weight


G2579
718
AP2 (52-119)
P5326 (floral meristem-
P9029
4766
Inc. fruit





expressed AP1 prom.)


weight


G2582
722
MADS (1-57)
P5310 (root-expressed
P9174
4804
Inc. lycopene





RSI1 prom.)





G2582
722
MADS (1-57)
P5326 (floral meristem-
P9174
4804
Inc. fruit





expressed AP1 prom.)


weight


G2586
724
WRKY (103-160)
P5310 (root-expressed
P8722
4751
Inc. lycopene





RSI1 prom.)





G2604
730
Z-LSDlike (34-64, 73-
P6506 (constitutive CaMv
P7700
4592
Inc. fruit




103)
35S prom.)


weight


G2604
730
Z-LSDlike (34-64, 73-
P5303 (fruit tissue-
P7700
4592
Inc. fruit




103)
expressed PD prom.)


weight


G2606
732
Z-C2H2 (120-140, 192-
P5287 (epidermal tissue-
P7753
4604
Inc. lycopene




214)
expressed LTP1 prom.)





G2616
736
HB (79-139)
P5326 (floral meristem-
P8735
4758
Inc. fruit





expressed AP1 prom.)


weight


G2620
740
TH (118-193)
P5297 (fruit tissue-
P8643
4728
Inc. brix





expressed PG prom.)





G2632
742
CAAT (166-223)
P5284 (leaf-expressed
P8662
4734
Inc. fruit





RbcS3 prom.)


weight


G2639
744
SRS (114-167)
P5310 (root-expressed


Inc. lycopene





RSI1 prom.)





G2639
744
SRS (114-167)
P5318 (shoot apical


Inc. fruit





meristem-expressed STM


weight





prom.)





G2639
744
SRS (114-167)
P5284 (leaf-expressed


Inc. fruit





RbcS3 prom.)


weight


G2639
744
SRS (114-167)
P5326 (floral meristem-


Inc. fruit





expressed AP1 prom.)


weight


G2639
744
SRS (114-167)
P5287 (epidermal tissue-


Inc. fruit





expressed LTP1 prom.)


weight


G2640
748
SRS (146-189)
P5310 (root-expressed
P9243
4814
Inc. lycopene





RSI1 prom.)





G2650
752
TEO (34-91)
P5318 (shoot apical
P8144
4647
Inc. lycopene





meristem-expressed STM








prom.)





G2650
752
TEO (34-91)
P5297 (fruit tissue-
P8144
4647
Inc. lycopene





expressed PG prom.)





G2655
754
HLH/MYC (119-178)
P6506 (constitutive CaMv
P7531
4574
Inc. brix





35S prom.)





G2655
754
HLH/MYC (119-178)
P5326 (floral meristem-
P7531
4574
Inc. fruit





expressed AP1 prom.)


weight


G2656
756
DBP (173-292)
P5284 (leaf-expressed
P9176
4805
Inc. lycopene





RbcS3 prom.)





G2656
756
DBP (173-292)
P5310 (root-expressed
P9176
4805
Inc. lycopene





RSI1 prom.)





G2656
756
DBP (173-292)
P5318 (shoot apical
P9176
4805
Inc. fruit





meristem-expressed STM


weight





prom.)





G2656
756
DBP (173-292)
P5326 (floral meristem-
P9176
4805
Inc. fruit





expressed AP1 prom.)


weight


G2661
758
HLH/MYC (40-97)
P5287 (epidermal tissue-
P9177
4806
Inc. fruit





expressed LTP1 prom.)


weight


G2661
758
HLH/MYC (40-97)
P5326 (floral meristem-
P9177
4806
Inc. fruit





expressed AP1 prom.)


weight


G2674
760
HB (56-116)
P5310 (root-expressed
P9272
4822
Inc. brix





RSI1 prom.)





G2674
760
HB (56-116)
P5287 (epidermal tissue-
P9272
4822
Inc. fruit





expressed LTP1 prom.)


weight


G2674
760
HB (56-116)
P5318 (shoot apical
P9272
4822
Inc. fruit





meristem-expressed STM


weight





prom.)





G2674
760
HB (56-116)
P5297 (fruit tissue-
P9272
4822
Inc. fruit





expressed PG prom.)


weight


G2674
760
HB (56-116)
P5284 (leaf-expressed
P9272
4822
Inc. fruit





RbcS3 prom.)


weight


G2682
764
CPP (67-181)
P5284 (leaf-expressed
P8241
4676
Inc. lycopene





RbcS3 prom.)





G2686
766
WRKY (122-173)
P5287 (epidermal tissue-
P8080
4640
Inc. brix





expressed LTP1 prom.)





G2686
766
WRKY (122-173)
P5284 (leaf-expressed
P8080
4640
Inc. lycopene





RbcS3 prom.)





G2688
768
WRKY (67-124)
P5319 (emergent leaf
P7508
4565
Inc. brix





primordia-expressed AS1








prom.)





G2688
768
WRKY (67-124)
P5297 (fruit tissue-
P7508
4565
Inc. brix





expressed PG prom.)





G2688
768
WRKY (67-124)
P5287 (epidermal tissue-
P7508
4565
Inc. brix





expressed LTP1 prom.)





G2688
768
WRKY (67-124)
P6506 (constitutive CaMv
P7508
4565
Inc. brix





35S prom.)





G2696
770
SCR (330-398, 545-
P5326 (floral meristem-
P8161
4650
Inc. fruit




621)
expressed AP1 prom.)


weight


G2697
772
SCR (233-298, 361-
P5318 (shoot apical
P8636
4725
Inc. brix




449, 453-525)
meristem-expressed STM








prom.)





G2697
772
SCR (233-298, 361-
P5310 (root-expressed
P8636
4725
Inc. lycopene




449, 453-525)
RSI1 prom.)





G2699
774
SCR (107-172, 243-
P5287 (epidermal tissue-
P7759
4606
Inc. brix




333, 333-407)
expressed LTP1 prom.)





G2699
774
SCR (107-172, 243-
P5297 (fruit tissue-
P7759
4606
Inc. lycopene




333, 333-407)
expressed PG prom.)





G2699
774
SCR (107-172, 243-
P5284 (leaf-expressed
P7759
4606
Inc. lycopene




333, 333-407)
RbcS3 prom.)





G2704
776
MYB-(R1)R2R3 (158-
P5310 (root-expressed
P9039
4768
Inc. lycopene




258)
RSI1 prom.)





G2710
778
HB (55-115)
P5310 (root-expressed
P8513
4691
Inc. brix





RSI1 prom.)





G2710
778
HB (55-115)
P5318 (shoot apical
P8513
4691
Inc. lycopene





meristem-expressed STM








prom.)





G2710
778
HB (55-115)
P5287 (epidermal tissue-
P8513
4691
Inc. lycopene





expressed LTP1 prom.)





G2712
780
HB (65-125)
P5318 (shoot apical
P8163
4651
Inc. fruit





meristem-expressed STM


weight





prom.)





G2715
782
MYB-(R1)R2R3 (25-
P5326 (floral meristem-
P4721
4333
Inc. brix




110)
expressed AP1 prom.)





G2719
784
MYB-(R1)R2R3 (56-
P5287 (epidermal tissue-
P4723
4335
Inc. brix




154)
expressed LTP1 prom.)





G2719
784
MYB-(R1)R2R3 (56-
P5318 (shoot apical
P4723
4335
Inc. lycopene




154)
meristem-expressed STM








prom.)





G2719
784
MYB-(R1)R2R3 (56-
P5287 (epidermal tissue-
P4723
4335
Inc. lycopene




154)
expressed LTP1 prom.)





G2720
786
MYB-(R1)R2R3 (10-
P5284 (leaf-expressed
P4722
4334
Inc. brix




114)
RbcS3 prom.)





G2720
786
MYB-(R1)R2R3 (10-
P5297 (fruit tissue-
P4722
4334
Inc. brix




114)
expressed PG prom.)





G2721
788
MYB-related (10-60)
P5324 (fruit vascular
P7734
4598
Inc. biomass





tissue-expressed Cru








prom.)





G2723
790
MYB-related (10-60)
P5287 (epidermal tissue-
P9190
4809
Inc. fruit





expressed LTP1 prom.)


weight


G2724
792
MYB-(R1)R2R3 (7-
P5284 (leaf-expressed
P4727
4337
Inc. lycopene




113)
RbcS3 prom.)





G2739
796
SCR (243-309, 368-
P5297 (fruit tissue-
P8743
4761
Inc. fruit




457, 466-541)
expressed PG prom.)


weight


G2739
796
SCR (243-309, 368-
P5318 (shoot apical
P8743
4761
Inc. fruit




457, 466-541)
meristem-expressed STM


weight





prom.)





G2739
796
SCR (243-309, 368-
P5326 (floral meristem-
P8743
4761
Inc. fruit




457, 466-541)
expressed AP1 prom.)


weight


G2739
796
SCR (243-309, 368-
P5284 (leaf-expressed
P8743
4761
Inc. fruit




457, 466-541)
RbcS3 prom.)


weight


G2742
800
GARP (28-76)
P5287 (epidermal tissue-
P8637
4726
Inc. fruit





expressed LTP1 prom.)


weight


G2747
802
ABI3/VP-1 (19-113)
P5287 (epidermal tissue-
P8127
4643
Inc. brix





expressed LTP1 prom.)





G2747
802
ABI3/VP-1 (19-113)
P5326 (floral meristem-
P8127
4643
Inc. brix





expressed AP1 prom.)





G2747
802
ABI3/VP-1 (19-113)
P5297 (fruit tissue-
P8127
4643
Inc. brix





expressed PG prom.)





G2747
802
ABI3/VP-1 (19-113)
P5287 (epidermal tissue-
P8127
4643
Inc. lycopene





expressed LTP1 prom.)





G2748
804
TEO (51-108)
P5303 (fruit tissue-
P8126
4642
Inc. brix





expressed PD prom.)





G2748
804
TEO (51-108)
P5326 (floral meristem-
P8126
4642
Inc. lycopene





expressed AP1 prom.)





G2750
806
AKR (231-719)
P5284 (leaf-expressed
P8215
4660
Inc. lycopene





RbcS3 prom.)





G2754
808
SWI/SNF (198-
P5318 (shoot apical
P8655
4731
Inc. fruit




393, 554-638)
meristem-expressed STM


weight





prom.)





G2766
810
HLH/MYC (234-292)
P5310 (root-expressed
P8606
4713
Inc. lycopene





RSI1 prom.)





G2766
810
HLH/MYC (234-292)
P6506 (constitutive CaMv
P8606
4713
Inc. fruit





35S prom.)


weight


G2774
814
HLH/MYC (158-215)
P5284 (leaf-expressed
P8725
4752
Inc. brix





RbcS3 prom.)





G2779
816
HLH/MYC (148-206)
P5297 (fruit tissue-
P9060
4773
Inc. brix





expressed PG prom.)





G2789
818
AT-hook (59-67, 68-
P5287 (epidermal tissue-
P4750
4343
Inc. fruit




208)
expressed LTP1 prom.)


weight


G2790
822
HLH/MYC (141-198)
P5287 (epidermal tissue-
P7497
4563
Inc. brix





expressed LTP1 prom.)





G2790
822
HLH/MYC (141-198)
P5284 (leaf-expressed
P7497
4563
Inc. lycopene





RbcS3 prom.)





G2791
824
HLH/MYC (102-159)
P5284 (leaf-expressed
P8133
4644
Inc. brix





RbcS3 prom.)





G2791
824
HLH/MYC (102-159)
P5326 (floral meristem-
P8133
4644
Inc. brix





expressed AP1 prom.)





G2791
824
HLH/MYC (102-159)
P5287 (epidermal tissue-
P8133
4644
Inc. brix





expressed LTP1 prom.)





G2791
824
HLH/MYC (102-159)
P5284 (leaf-expressed
P8133
4644
Inc. lycopene





RbcS3 prom.)





G2791
824
HLH/MYC (102-159)
P5326 (floral meristem-
P8133
4644
Inc. lycopene





expressed AP1 prom.)





G2792
826
HLH/MYC (307-364)
P5326 (floral meristem-
P8731
4755
Inc. brix





expressed AP1 prom.)





G2800
832
NAC (11-150)
P5297 (fruit tissue-
P8536
4694
Inc. brix





expressed PG prom.)





G2800
832
NAC (11-150)
P5318 (shoot apical
P8536
4694
Inc. brix





meristem-expressed STM








prom.)





G2802
834
NAC (48-196)
P5287 (epidermal tissue-
P8660
4733
Inc. fruit





expressed LTP1 prom.)


weight


G2803
836
NAC (8-160)
P5318 (shoot apical
P7594
4589
Inc. fruit





meristem-expressed STM


weight





prom.)





G2803
836
NAC (8-160)
P5287 (epidermal tissue-
P7594
4589
Inc. fruit





expressed LTP1 prom.)


weight


G2803
836
NAC (8-160)
P5326 (floral meristem-
P7594
4589
Inc. fruit





expressed AP1 prom.)


weight


G2803
836
NAC (8-160)
P5284 (leaf-expressed
P7594
4589
Inc. fruit





RbcS3 prom.)


weight


G2804
838
NAC (38-130)
P5287 (epidermal tissue-
P8741
4760
Inc. fruit





expressed LTP1 prom.)


weight


G2809
840
HB (95-155)
P5326 (floral meristem-
P8681
4742
Inc. lycopene





expressed AP1 prom.)





G2818
842
SWI/SNF (24-239, 456-
P5326 (floral meristem-
P8585
4707
Inc. fruit




539)
expressed AP1 prom.)


weight


G2826
844
Z-C2H2 (75-95)
P5318 (shoot apical
P7727
4597
Inc. lycopene





meristem-expressed STM








prom.)





G2826
844
Z-C2H2 (75-95)
P5287 (epidermal tissue-
P7727
4597
Inc. lycopene





expressed LTP1 prom.)





G2826
844
Z-C2H2 (75-95)
P5284 (leaf-expressed
P7727
4597
Inc. lycopene





RbcS3 prom.)





G2831
846
Z-C2H2 (72-92, 148-
P5318 (shoot apical
P8618
4719
Inc. fruit




168)
meristem-expressed STM


weight





prom.)





G2831
846
Z-C2H2 (72-92, 148-
P5297 (fruit tissue-
P8618
4719
Inc. fruit




168)
expressed PG prom.)


weight


G2836
848
Z-C2H2 (160-181)
P5326 (floral meristem-
P7765
4608
Inc. brix





expressed AP1 prom.)





G2837
850
Z-C2H2 (140-160)
P5303 (fruit tissue-
P8625
4722
Inc. brix





expressed PD prom.)





G2837
850
Z-C2H2 (140-160)
P5303 (fruit tissue-
P8625
4722
Inc. lycopene





expressed PD prom.)





G2837
850
Z-C2H2 (140-160)
P5297 (fruit tissue-
P8625
4722
Inc. lycopene





expressed PG prom.)





G2838
852
Z-C2H2 (57-77)
P5318 (shoot apical
P8578
4705
Inc. brix





meristem-expressed STM








prom.)





G2838
852
Z-C2H2 (57-77)
P6506 (constitutive CaMv
P8578
4705
Large flowers





35S prom.)





G2840
854
Z-C2H2 (246-266, 297-
P5326 (floral meristem-
P7741
4601
Inc. brix




328, 335-356)
expressed AP1 prom.)





G2848
856
HLH/MYC (29-83)
P5318 (shoot apical
P7573
4585
Inc. fruit





meristem-expressed STM


weight





prom.)





G2848
856
HLH/MYC (29-83)
P5297 (fruit tissue-
P7573
4585
Inc. fruit





expressed PG prom.)


weight


G2848
856
HLH/MYC (29-83)
P5326 (floral meristem-
P7573
4585
Inc. fruit





expressed AP1 prom.)


weight


G2848
856
HLH/MYC (29-83)
P5287 (epidermal tissue-
P7573
4585
Inc. fruit





expressed LTP1 prom.)


weight


G2849
858
HLH/MYC (28-81)
P5297 (fruit tissue-
P7784
4614
Inc. brix





expressed PG prom.)





G2849
858
HLH/MYC (28-81)
P5297 (fruit tissue-
P7784
4614
Inc. lycopene





expressed PG prom.)





G2855
862
ACBF-like (105-285)
P5310 (root-expressed
P8690
4745
Inc. brix





RSI1 prom.)





G2855
862
ACBF-like (105-285)
P5310 (root-expressed
P8690
4745
Inc. lycopene





RSI1 prom.)





G2855
862
ACBF-like (105-285)
P5287 (epidermal tissue-
P8690
4745
Inc. fruit





expressed LTP1 prom.)


weight


G2855
862
ACBF-like (105-285)
P5284 (leaf-expressed
P8690
4745
Inc. fruit





RbcS3 prom.)


weight


G2855
862
ACBF-like (105-285)
P5318 (shoot apical
P8690
4745
Inc. fruit





meristem-expressed STM


weight





prom.)





G2855
862
ACBF-like (105-285)
P5326 (floral meristem-
P8690
4745
Inc. fruit





expressed AP1 prom.)


weight


G2856
864
ACBF-like (25-335)
P5297 (fruit tissue-


Inc. lycopene





expressed PG prom.)





G2856
864
ACBF-like (25-335)
P5287 (epidermal tissue-


Inc. fruit





expressed LTP1 prom.)


weight


G2856
864
ACBF-like (25-335)
P5318 (shoot apical


Inc. fruit





meristem-expressed STM


weight





prom.)





G2876
868
AKR (152-653)
P5297 (fruit tissue-


Inc. brix





expressed PG prom.)





G2885
872
GARP (196-243)
P5287 (epidermal tissue-
P8143
4646
Inc. brix





expressed LTP1 prom.)





G2885
872
GARP (196-243)
P5287 (epidermal tissue-
P8143
4646
Inc. lycopene





expressed LTP1 prom.)





G2887
874
NAC (4-180)
P5326 (floral meristem-
P8178
4656
Inc. fruit





expressed AP1 prom.)


weight


G2891
876
AKR (92-594)
P5287 (epidermal tissue-
P9228
4813
Inc. lycopene





expressed LTP1 prom.)





G2891
876
AKR (92-594)
P5284 (leaf-expressed
P9228
4813
Inc. lycopene





RbcS3 prom.)





G2891
876
AKR (92-594)
P5310 (root-expressed
P9228
4813
Inc. lycopene





RSI1 prom.)





G2893
878
MYB-(R1)R2R3 (19-
P5326 (floral meristem-
P4729
4338
Inc. lycopene




120)
expressed AP1 prom.)





G2893
878
MYB-(R1)R2R3 (19-
P5318 (shoot apical
P4729
4338
Inc. fruit




120)
meristem-expressed STM


weight





prom.)





G2896
880
HMG (30-102)
P5326 (floral meristem-
P7588
4588
Inc. lycopene





expressed AP1 prom.)





G2896
880
HMG (30-102)
P5297 (fruit tissue-
P7588
4588
Inc. lycopene





expressed PG prom.)





G2898
882
HMG (59-131)
P5326 (floral meristem-
P8141
4645
Inc. brix





expressed AP1 prom.)





G2898
882
HMG (59-131)
P5284 (leaf-expressed
P8141
4645
Inc. lycopene





RbcS3 prom.)





G2898
882
HMG (59-131)
P5297 (fruit tissue-
P8141
4645
Inc. lycopene





expressed PG prom.)





G2898
882
HMG (59-131)
P5326 (floral meristem-
P8141
4645
Inc. lycopene





expressed AP1 prom.)





G2898
882
HMG (59-131)
P5287 (epidermal tissue-
P8141
4645
Inc. lycopene





expressed LTP1 prom.)





G2902
888
HMG (128-198, 242-
P5284 (leaf-expressed
P8738
4759
Inc. lycopene




311, 371-441)
RbcS3 prom.)





G2902
888
HMG (128-198, 242-
P5318 (shoot apical
P8738
4759
Inc. lycopene




311, 371-441)
meristem-expressed STM








prom.)





G2902
888
HMG (128-198, 242-
P5310 (root-expressed
P8738
4759
Inc. lycopene




311, 371-441)
RSI1 prom.)





G2906
890
Z-C2H2 (119-140)
P5287 (epidermal tissue-
P7599
4591
Inc. fruit





expressed LTP1 prom.)


weight


G2906
890
Z-C2H2 (119-140)
P5324 (fruit vascular
P7599
4591
Inc. fruit





tissue-expressed Cru


weight





prom.)





G2906
890
Z-C2H2 (119-140)
P5318 (shoot apical
P7599
4591
Inc. fruit





meristem-expressed STM


weight





prom.)





G2906
890
Z-C2H2 (119-140)
P5284 (leaf-expressed
P7599
4591
Inc. fruit





RbcS3 prom.)


weight


G2910
892
PCGL (22-130, 778-
P5310 (root-expressed
P8702
4749
Inc. lycopene




847)
RSI1 prom.)





G2918
894
JUMONJI (108-
P5326 (floral meristem-
P8620
4720
Inc. brix




143, 294-446)
expressed AP1 prom.)





G2918
894
JUMONJI (108-
P5284 (leaf-expressed
P8620
4720
Inc. fruit




143, 294-446)
RbcS3 prom.)


weight


G2921
896
JUMONJI (55-119, 267-
P5287 (epidermal tissue-
P8596
4712
Inc. fruit




419)
expressed LTP1 prom.)


weight


G2927
898
HLH/MYC (341-398)
P5284 (leaf-expressed
P8564
4702
Inc. fruit





RbcS3 prom.)


weight


G2929
900
HLH/MYC (70-130)
P5284 (leaf-expressed
P8656
4732
Inc. fruit





RbcS3 prom.)


weight


G2929
900
HLH/MYC (70-130)
P5287 (epidermal tissue-
P8656
4732
Inc. fruit





expressed LTP1 prom.)


weight


G2929
900
HLH/MYC (70-130)
P5326 (floral meristem-
P8656
4732
Inc. fruit





expressed AP1 prom.)


weight


G2930
902
HLH/MYC (57-120)
P5297 (fruit tissue-
P7565
4581
Inc. brix





expressed PG prom.)





G2930
902
HLH/MYC (57-120)
P6506 (constitutive CaMv
P7565
4581
Inc. brix





35S prom.)





G2930
902
HLH/MYC (57-120)
P5284 (leaf-expressed
P7565
4581
Inc. brix





RbcS3 prom.)





G2931
904
HLH/MYC (71-131)
P5287 (epidermal tissue-
P9179
4807
Inc. fruit





expressed LTP1 prom.)


weight


G2931
904
HLH/MYC (71-131)
P5284 (leaf-expressed
P9179
4807
Inc. fruit





RbcS3 prom.)


weight


G2936
906
HLH/MYC (82-142)
P5310 (root-expressed
P9180
4808
Inc. lycopene





RSI1 prom.)





G2936
906
HLH/MYC (82-142)
P5318 (shoot apical
P9180
4808
Inc. fruit





meristem-expressed STM


weight





prom.)





G2936
906
HLH/MYC (82-142)
P5284 (leaf-expressed
P9180
4808
Inc. fruit





RbcS3 prom.)


weight


G2965
912
Z-C2H2 (49-70)
P5284 (leaf-expressed
P7709
4594
Inc. fruit





RbcS3 prom.)


weight


G2966
914
Z-C2H2 (233-254)
P5326 (floral meristem-
P8490
4685
Inc. fruit





expressed AP1 prom.)


weight


G2972
916
Z-C2H2 (8-32, 129-
P5284 (leaf-expressed
P7597
4590
Inc. fruit




149, 277-294)
RbcS3 prom.)


weight


G2979
918
E2F (192-211)
P5310 (root-expressed
P8685
4743
Inc. lycopene





RSI1 prom.)





G2980
920
E2F (39-337)
P5318 (shoot apical
P8686
4744
Inc. fruit





meristem-expressed STM


weight





prom.)





G2982
922
E2F (107-124)
P5326 (floral meristem-
P8515
4692
Inc. brix





expressed AP1 prom.)





G2982
922
E2F (107-124)
P5297 (fruit tissue-
P8515
4692
Inc. brix





expressed PG prom.)





G2983
924
HB (88-148)
P5297 (fruit tissue-
P8539
4696
Inc. brix





expressed PG prom.)





G2983
924
HB (88-148)
P5310 (root-expressed
P8539
4696
Inc. lycopene





RSI1 prom.)





G2985
926
OTHER (353-488)
P5287 (epidermal tissue-
P8221
4662
Inc. fruit





expressed LTP1 prom.)


weight


G2985
926
OTHER (353-488)
P5310 (root-expressed
P8221
4662
Inc. fruit





RSI1 prom.)


weight


G2985
926
OTHER (353-488)
P5318 (shoot apical
P8221
4662
Inc. fruit





meristem-expressed STM


weight





prom.)





G2989
928
ZF-HB (50-105, 192-
P5284 (leaf-expressed
P7514
4569
Inc. lycopene




255)
RbcS3 prom.)





G2989
928
ZF-HB (50-105, 192-
P5284 (leaf-expressed
P7514
4569
Inc. brix




255)
RbcS3 prom.)





G2990
930
ZF-HB (54-109, 200-
P5287 (epidermal tissue-
P7515
4570
Inc. fruit




263)
expressed LTP1 prom.)


weight


G2992
932
ZF-HB (29-84, 156-
P5326 (floral meristem-
P8122
4641
Inc. brix




219)
expressed AP1 prom.)





G2992
932
ZF-HB (29-84, 156-
P5318 (shoot apical
P8122
4641
Inc. brix




219)
meristem-expressed STM








prom.)





G2992
932
ZF-HB (29-84, 156-
P5287 (epidermal tissue-
P8122
4641
Inc. brix




219)
expressed LTP1 prom.)





G2992
932
ZF-HB (29-84, 156-
P5297 (fruit tissue-
P8122
4641
Inc. brix




219)
expressed PG prom.)





G2992
932
ZF-HB (29-84, 156-
P5318 (shoot apical
P8122
4641
Inc. lycopene




219)
meristem-expressed STM








prom.)





G2992
932
ZF-HB (29-84, 156-
P5326 (floral meristem-
P8122
4641
Inc. lycopene




219)
expressed AP1 prom.)





G2993
934
ZF-HB (85-138, 222-
P5297 (fruit tissue-
P7787
4616
Inc. brix




285)
expressed PG prom.)





G2995
936
ZF-HB (3-58, 115-178)
P5319 (emergent leaf
P7516
4571
Inc. fruit





primordia-expressed AS1


weight





prom.)





G2996
938
ZF-HB (73-126, 191-
P5297 (fruit tissue-
P7513
4568
Inc. fruit




254)
expressed PG prom.)


weight


G2998
940
ZF-HB (74-127, 240-
P5284 (leaf-expressed
P7517
4572
Inc. brix




303)
RbcS3 prom.)





G2999
942
ZF-HB (80-133, 198-
P5310 (root-expressed
P8587
4709
Inc. brix




261)
RSI1 prom.)





G2999
942
ZF-HB (80-133, 198-
P5310 (root-expressed
P8587
4709
Inc. lycopene




261)
RSI1 prom.)





G3006
948
HS (38-153)
P5284 (leaf-expressed
P9059
4772
Inc. fruit





RbcS3 prom.)


weight


G3006
948
HS (38-153)
P5318 (shoot apical
P9059
4772
Inc. fruit





meristem-expressed STM


weight





prom.)





G3006
948
HS (38-153)
P5297 (fruit tissue-
P9059
4772
Inc. fruit





expressed PG prom.)


weight


G3006
948
HS (38-153)
P5326 (floral meristem-
P9059
4772
Inc. fruit





expressed AP1 prom.)


weight


G3007
950
TUBBY (21-137, 141-
P5326 (floral meristem-
P8680
4741
Inc. fruit




188)
expressed AP1 prom.)


weight


G3007
950
TUBBY (21-137, 141-
P5284 (leaf-expressed
P8680
4741
Inc. fruit




188)
RbcS3 prom.)


weight


G3007
950
TUBBY (21-137, 141-
P5318 (shoot apical
P8680
4741
Inc. fruit




188)
meristem-expressed STM


weight





prom.)





G3007
950
TUBBY (21-137, 141-
P5287 (epidermal tissue-
P8680
4741
Inc. fruit




188)
expressed LTP1 prom.)


weight


G3009
952
SCR (228-293, 350-
P5284 (leaf-expressed
P8491
4686
Inc. lycopene




437, 441-515)
RbcS3 prom.)





G3012
954
HLH/MYC (257-314)
P5297 (fruit tissue-
P7568
4583
Inc. brix





expressed PG prom.)





G3012
954
HLH/MYC (257-314)
P5287 (epidermal tissue-
P7568
4583
Inc. lycopene





expressed LTP1 prom.)





G3021
956
HLH/MYC (91-148)
P5318 (shoot apical
P7566
4582
Inc. brix





meristem-expressed STM








prom.)





G3021
956
HLH/MYC (91-148)
P5287 (epidermal tissue-
P7566
4582
Inc. lycopene





expressed LTP1 prom.)





G3023
958
HLH/MYC (8-68)
P5287 (epidermal tissue-
P7571
4584
Inc. fruit





expressed LTP1 prom.)


weight


G3023
958
HLH/MYC (8-68)
P5318 (shoot apical
P7571
4584
Inc. fruit





meristem-expressed STM


weight





prom.)





G3032
960
GARP (285-333)
P5318 (shoot apical
P8674
4739
Inc. fruit





meristem-expressed STM


weight





prom.)





G3034
962
GARP (218-266)
P5326 (floral meristem-
P9194
4810
Inc. fruit





expressed AP1 prom.)


weight


G3037
964
NAC (15-142)
P5318 (shoot apical
P8621
4721
Inc. fruit





meristem-expressed STM


weight





prom.)





G3037
964
NAC (15-142)
P5287 (epidermal tissue-
P8621
4721
Inc. fruit





expressed LTP1 prom.)


weight


G3037
964
NAC (15-142)
P5326 (floral meristem-
P8621
4721
Inc. fruit





expressed AP1 prom.)


weight


G3040
966
NAC (4-144)
P5326 (floral meristem-
P8666
4735
Inc. brix





expressed AP1 prom.)





G3041
968
NAC (8-136)
P5284 (leaf-expressed
P8220
4661
Inc. fruit





RbcS3 prom.)


weight


G3041
968
NAC (8-136)
P5318 (shoot apical
P8220
4661
Inc. fruit





meristem-expressed STM


weight





prom.)





G3054
970
Z-C3H (77-96, 149-168)
P5319 (emergent leaf
P7494
4561
Inc. brix





primordia-expressed AS1








prom.)





G3054
970
Z-C3H (77-96, 149-168)
P5297 (fruit tissue-
P7494
4561
Inc. brix





expressed PG prom.)





G3054
970
Z-C3H (77-96, 149-168)
P5303 (fruit tissue-
P7494
4561
Inc. brix





expressed PD prom.)





G3054
970
Z-C3H (77-96, 149-168)
P5284 (leaf-expressed
P7494
4561
Inc. brix





RbcS3 prom.)





G3055
972
Z-C3H (97-115, 178-
P5297 (fruit tissue-
P7745
4602
Inc. brix




197, 266-287)
expressed PG prom.)





G3055
972
Z-C3H (97-115, 178-
P5284 (leaf-expressed
P7745
4602
Inc. lycopene




197, 266-287)
RbcS3 prom.)





G3060
976
Z-C3H (42-61, 219-237)
P5326 (floral meristem-
P8177
4655
Inc. lycopene





expressed AP1 prom.)





G3063
978
Z-C2H2 (63-83, 139-
P5318 (shoot apical
P8640
4727
Inc. fruit




159)
meristem-expressed STM


weight





prom.)





G3063
978
Z-C2H2 (63-83, 139-
P5287 (epidermal tissue-
P8640
4727
Inc. fruit




159)
expressed LTP1 prom.)


weight


G3063
978
Z-C2H2 (63-83, 139-
P5284 (leaf-expressed
P8640
4727
Inc. fruit




159)
RbcS3 prom.)


weight


G3064
980
Z-C2H2 (154-175)
P5297 (fruit tissue-
P8495
4689
Inc. fruit





expressed PG prom.)


weight


G3066
982
Z-C2H2 (80-101, 284-
P5319 (emergent leaf
P7702
4593
Inc. fruit




306)
primordia-expressed AS1


weight





prom.)





G3066
982
Z-C2H2 (80-101, 284-
P5287 (epidermal tissue-
P7702
4593
Inc. fruit




306)
expressed LTP1 prom.)


weight


G3066
982
Z-C2H2 (80-101, 284-
P5297 (fruit tissue-
P7702
4593
Inc. fruit




306)
expressed PG prom.)


weight


G3067
984
Z-C2H2 (198-219)
P5318 (shoot apical
P7495
4562
Inc. lycopene





meristem-expressed STM








prom.)





G3074
986
CAAT (3-86)
P5287 (epidermal tissue-
P8166
4652
Inc. brix





expressed LTP1 prom.)





G3074
986
CAAT (3-86)
P5326 (floral meristem-
P8166
4652
Inc. brix





expressed AP1 prom.)





G3075
988
CAAT (111-192)
P5287 (epidermal tissue-
P7738
4600
Inc. lycopene





expressed LTP1 prom.)





G3080
990
bZIP-ZW2 (76-
P5318 (shoot apical
P7546
4579
Inc. fruit




106, 210-237)
meristem-expressed STM


weight





prom.)





G3090
994
PLATZ (12-147)
P5310 (root-expressed
P8676
4740
Inc. brix





RSI1 prom.)





G3090
994
PLATZ (12-147)
P5326 (floral meristem-
P8676
4740
Inc. lycopene





expressed AP1 prom.)





G3090
994
PLATZ (12-147)
P5310 (root-expressed
P8676
4740
Inc. lycopene





RSI1 prom.)





G3090
994
PLATZ (12-147)
P5297 (fruit tissue-
P8676
4740
Inc. lycopene





expressed PG prom.)





G3101
996
Z-C2H2 (14-78)
P5287 (epidermal tissue-
P8555
4699
Inc. brix





expressed LTP1 prom.)





G3101
996
Z-C2H2 (14-78)
P5287 (epidermal tissue-
P8555
4699
Inc. lycopene





expressed LTP1 prom.)





G3102
998
Z-C2H2 (397-440)
P5310 (root-expressed
P8733
4756
Inc. brix





RSI1 prom.)





G3102
998
Z-C2H2 (397-440)
P5318 (shoot apical
P8733
4756
Inc. fruit





meristem-expressed STM


weight





prom.)





G3111
1000
RING/C3H2C3 (111-
P5287 (epidermal tissue-


Inc. lycopene




152)
expressed LTP1 prom.)





Abbreviations for Table 7:


inc. - increased or greater, relative to control plants


Cru - Cruciferin promoter


PG - Polygalacturonase promoter


PD - Phytoene desaturase promoter


ABI3/VP1 - Abscisic Acid Insensitive/maize VP1 like proteins


ACBF - AC-rich Binding Factors


AKR - Aldo-Keto Reductase family proteins


ARF - Auxin Response Factor family


BPF-1 Box P-binding factor Family proteins


CAAT - CCAAT-box binding family proteins


CPP - Cysteine-rich Polycomb-like Proteins


DBP - DNA-Binding Protein; miscellaneous proteins that bind to DNA


EIL - Ethylene Insensitive 3-Like proteins


ENBP - pea Early Nodulin gene-Binding Proteins


GF14 - G-Box Factor 14-3-3 Homolog family


GARP - Golgi-Associated Retrograde Protein complex proteins


HLH - Helix-Loop-Helix proteins


HMG - High Mobility Group family proteins


HS - Heat Shock transcription factor proteins


MADS - MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor family proteins


MYB - Myeloblastosis proto-oncogene product-like family of TFs


MYC - similar to myelocytomatosis viral oncogene (v-Myc) family proteins


PCF - PCF1- and PCF2-like proteins


Pcomb - Polycomb group (Pc-G) family proteins


PLATZ - Plant AT-rich sequence and Zinc-binding protein family proteins


PMR - Putative Myb-Related family proteins


SCR - SCARECROW family proteins


SRS - Short Internodes or SHI transcription factor family proteins


SWI/SNF - switching mating type (SWI) and sucrose non-fermenting-like chromatin remodeling factors


TEO - Teosinte branched1 like proteins


TH - Triple Helix family proteins


ZF-HB - (also ZF-HD) zinc finger - homeodomain family proteins






Example VIII
Orthologs and Paralogs of the Sequences of the Invention
Table 8 lists sequences discovered to be orthologous or paralogous to a number of transcription factors of the instant Sequence Listing. The columns headings include, from left to right: Column 1: the SEQ ID NO; Column 2: the corresponding Arabidopsis Gene identification (GID) numbers; Column 3: the sequence type (DNA or protein, PRT); Column 4: the species from which the sequence derives; and Column 5: the relationship to other sequences in this table and the Sequence Listing.







TABLE 8







Putative homologs of Arabidopsis transcription factor genes identified using BLAST analysis











Col. 1

Col. 3




SEQ

DNA




ID
Col. 2
or
Col. 4
Col. 5


NO:
GID
PRT
Species
Relationship














1
G1004
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1419, G43, G46,






G29; orthologous to G3849


2
G1004
PRT
A. thaliana
Paralogous to G1419, G43, G46, G29; Orthologous to G3849


3
G1006
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G22, G28;






orthologous to G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3857, G3858, G3864, G3865, G4626, G5171


4
G1006
PRT
A. thaliana
Paralogous to G22, G28; Orthologous to G3430, G3659, G3660,






G3661, G3717, G3718, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


5
G1007
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1846


6
G1007
PRT
A. thaliana
Paralogous to G1846


7
G1008
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2130


8
G1008
PRT
A. thaliana
Paralogous to G2130


13
G1021
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G224, G1466, G223


14
G1021
PRT
A. thaliana
Paralogous to G224, G1466, G223


17
G1033
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1029, G279


18
G1033
PRT
A. thaliana
Paralogous to G1029, G279


21
G1053
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2629


22
G1053
PRT
A. thaliana
Paralogous to G2629


23
G1057
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3027


24
G1057
PRT
A. thaliana
Paralogous to G3027


25
G1062
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1664


26
G1062
PRT
A. thaliana
Paralogous to G1664


27
G1065
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G602


28
G1065
PRT
A. thaliana
Paralogous to G602


29
G1067
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1073, G2156;






orthologous to G3399, G3400


30
G1067
PRT
A. thaliana
Paralogous to G1073, G2156; Orthologous to G3399, G3400


33
G1076
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1075; orthologous






to G3406, G3407, G3458, G3459, G3460, G3461


34
G1076
PRT
A. thaliana
Paralogous to G1075; Orthologous to G3406, G3407, G3458, G3459,






G3460, G3461


35
G1078
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G577


36
G1078
PRT
A. thaliana
Paralogous to G577


45
G1091
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2588


46
G1091
PRT
A. thaliana
Paralogous to G2588


49
G1113
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G911


50
G1113
PRT
A. thaliana
Paralogous to G911


53
G1131
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2767


54
G1131
PRT
A. thaliana
Paralogous to G2767


55
G1133
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1137


56
G1133
PRT
A. thaliana
Paralogous to G1137


57
G1134
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2555


58
G1134
PRT
A. thaliana
Paralogous to G2555


59
G1136
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G584


60
G1136
PRT
A. thaliana
Paralogous to G584


61
G1137
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1133


62
G1137
PRT
A. thaliana
Paralogous to G1133


63
G1140
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G861; orthologous to






G3984, G3985, G3986, G3987, G3988, G3989, G3990, G3991,






G3992, G3998, G3999, G4060


64
G1140
PRT
A. thaliana
Paralogous to G861; Orthologous to G3984, G3985, G3986, G3987,






G3988, G3989, G3990, G3991, G3992, G3998, G3999, G4060


65
G1141
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G38


66
G1141
PRT
A. thaliana
Paralogous to G38


67
G1146
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1149, G1152


68
G1146
PRT
A. thaliana
Paralogous to G1149, G1152


73
G1198
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1806, G554, G555,






G556, G558, G578, G629


74
G1198
PRT
A. thaliana
Paralogous to G1806, G554, G555, G556, G558, G578, G629


75
G1211
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G291


76
G1211
PRT
A. thaliana
Paralogous to G291


77
G1216
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2494


78
G1216
PRT
A. thaliana
Paralogous to G2494


81
G1228
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1227


82
G1228
PRT
A. thaliana
Paralogous to G1227


85
G1233
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1303


86
G1233
PRT
A. thaliana
Paralogous to G1303


87
G1240
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1241


88
G1240
PRT
A. thaliana
Paralogous to G1241


89
G1243
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1242


90
G1243
PRT
A. thaliana
Paralogous to G1242


93
G1247
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1245


94
G1247
PRT
A. thaliana
Paralogous to G1245


97
G1256
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2003


98
G1256
PRT
A. thaliana
Paralogous to G2003


99
G1266
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G5184, G5185,






G5186, G5170


100
G1266
PRT
A. thaliana
Orthologous to G5184, G5185, G5186, G5170


105
G1274
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1275; orthologous






to G3722, G3723, G3724, G3731, G3732, G3803, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3733,






G3795, G3797, G3802, G3804


106
G1274
PRT
A. thaliana
Paralogous to G1275; Orthologous to G3722, G3723, G3724, G3731,






G3732, G3803, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3802, G3804


107
G1275
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1274; orthologous






to G3722, G3723, G3724, G3731, G3732, G3803, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3733,






G3795, G3797, G3802, G3804


108
G1275
PRT
A. thaliana
Paralogous to G1274; Orthologous to G3722, G3723, G3724, G3731,






G3732, G3803, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3802, G3804


111
G1293
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2469


112
G1293
PRT
A. thaliana
Paralogous to G2469


115
G1303
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1233


116
G1303
PRT
A. thaliana
Paralogous to G1233


121
G1309
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G237


122
G1309
PRT
A. thaliana
Paralogous to G237


123
G1313
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1325


124
G1313
PRT
A. thaliana
Paralogous to G1325


127
G1319
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G670


128
G1319
PRT
A. thaliana
Paralogous to G670


129
G1320
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1321


130
G1320
PRT
A. thaliana
Paralogous to G1321


131
G1324
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2893


132
G1324
PRT
A. thaliana
Paralogous to G2893


135
G1335
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G652


136
G1335
PRT
A. thaliana
Paralogous to G652


139
G1349
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1887, G896


140
G1349
PRT
A. thaliana
Paralogous to G1887, G896


143
G1354
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1355, G1453,






G1766, G2534, G522, G761


144
G1354
PRT
A. thaliana
Paralogous to G1355, G1453, G1766, G2534, G522, G761


145
G1355
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1453,






G1766, G2534, G522, G761


146
G1355
PRT
A. thaliana
Paralogous to G1354, G1453, G1766, G2534, G522, G761


149
G1364
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2345, G481, G482,






G485; orthologous to G3394, G3395, G3396, G3397, G3398, G3429,






G3434, G3435, G3436, G3437, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3866, G3868, G3870, G3873,






G3874, G3875, G3876, G3938, G4272, G4276


150
G1364
PRT
A. thaliana
Paralogous to G2345, G481, G482, G485; Orthologous to G3394,






G3395, G3396, G3397, G3398, G3429, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


153
G137
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G139, G145


154
G137
PRT
A. thaliana
Paralogous to G139, G145


155
G1379
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G12, G1277, G24;






orthologous to G3656


156
G1379
PRT
A. thaliana
Paralogous to G12, G1277, G24; Orthologous to G3656


161
G1384
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1763


162
G1384
PRT
A. thaliana
Paralogous to G1763


165
G139
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G137, G145


166
G139
PRT
A. thaliana
Paralogous to G137, G145


167
G1394
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1395, G1396


168
G1394
PRT
A. thaliana
Paralogous to G1395, G1396


169
G1395
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1394, G1396


170
G1395
PRT
A. thaliana
Paralogous to G1394, G1396


171
G140
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G129, G136, G146


172
G140
PRT
A. thaliana
Paralogous to G129, G136, G146


177
G1419
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G43, G46, G1004,






G29; orthologous to G3849


178
G1419
PRT
A. thaliana
Paralogous to G43, G46, G1004, G29; Orthologous to G3849


179
G1421
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1750, G440, G864;






orthologous to G4079, G4080, G4283, G4284, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


180
G1421
PRT
A. thaliana
Paralogous to G1750, G440, G864; Orthologous to G4079, G4080,






G4283, G4284, G4285, G4286, G4287, G4288, G4289, G4290,






G4291, G4292, G4293


181
G1423
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1424, G2988


182
G1423
PRT
A. thaliana
Paralogous to G1424, G2988


183
G1435
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2741; orthologous






to G4240, G4241, G4243, G4244, G4245


184
G1435
PRT
A. thaliana
Paralogous to G2741; Orthologous to G4240, G4241, G4243, G4244,






G4245


189
G1439
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1868


190
G1439
PRT
A. thaliana
Paralogous to G1868


195
G145
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G137, G139


196
G145
PRT
A. thaliana
Paralogous to G137, G139


197
G1451
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G990


198
G1451
PRT
A. thaliana
Paralogous to G990


199
G1456
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1927, G2184


200
G1456
PRT
A. thaliana
Paralogous to G1927, G2184


201
G146
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G129, G136, G140


202
G146
PRT
A. thaliana
Paralogous to G129, G136, G140


203
G1460
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1458, G1459


204
G1460
PRT
A. thaliana
Paralogous to G1458, G1459


205
G1462
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1461, G1463,






G1464, G1465


206
G1462
PRT
A. thaliana
Paralogous to G1461, G1463, G1464, G1465


213
G1478
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1929; orthologous






to G4019


214
G1478
PRT
A. thaliana
Paralogous to G1929; Orthologous to G4019


215
G148
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G142


216
G148
PRT
A. thaliana
Paralogous to G142


217
G1480
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G897, G899


218
G1480
PRT
A. thaliana
Paralogous to G897, G899


219
G1487
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1505


220
G1487
PRT
A. thaliana
Paralogous to G1505


221
G1488
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1489


222
G1488
PRT
A. thaliana
Paralogous to G1489


223
G1491
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2128


224
G1491
PRT
A. thaliana
Paralogous to G2128


225
G1494
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G789


226
G1494
PRT
A. thaliana
Paralogous to G789


231
G1505
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1487


232
G1505
PRT
A. thaliana
Paralogous to G1487


233
G1506
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1509


234
G1506
PRT
A. thaliana
Paralogous to G1509


235
G1510
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1779


236
G1510
PRT
A. thaliana
Paralogous to G1779


239
G1518
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G4628, G4629,






G4633, G4635


240
G1518
PRT
A. thaliana
Orthologous to G4628, G4629, G4633, G4635


249
G1535
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G389


250
G1535
PRT
A. thaliana
Paralogous to G389


251
G1538
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1545, G412


252
G1538
PRT
A. thaliana
Paralogous to G1545, G412


253
G154
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G149, G627, G1011,






G1797, G1798; orthologous to G4061, G4062, G4063, G4064,






G4065, G4066, G4067


254
G154
PRT
A. thaliana
Paralogous to G149, G627, G1011, G1797, G1798; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


257
G1543
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G3510, G3490,






G3524, G4369, G4370, G4371


258
G1543
PRT
A. thaliana
Orthologous to G3510, G3490, G3524, G4369, G4370, G4371


261
G1550
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1592


262
G1550
PRT
A. thaliana
Paralogous to G1592


265
G1553
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G472, G716


266
G1553
PRT
A. thaliana
Paralogous to G472, G716


267
G1559
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G632


268
G1559
PRT
A. thaliana
Paralogous to G632


271
G157
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1759, G1842,






G1843, G1844, G859


272
G157
PRT
A. thaliana
Paralogous to G1759, G1842, G1843, G1844, G859


273
G159
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G165


274
G159
PRT
A. thaliana
Paralogous to G165


275
G1592
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1550


276
G1592
PRT
A. thaliana
Paralogous to G1550


277
G1634
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1638, G2452,






G1641, G2701


278
G1634
PRT
A. thaliana
Paralogous to G1638, G2452, G1641, G2701


283
G1638
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2452, G1641,






G1634, G2701


284
G1638
PRT
A. thaliana
Paralogous to G2452, G1641, G1634, G2701


289
G1646
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G715; orthologous to






G3883, G3884, G3885, G3886, G3889, G3543, G4259


290
G1646
PRT
A. thaliana
Paralogous to G715; Orthologous to G3883, G3884, G3885, G3886,






G3889, G3543, G4259


291
G165
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G159


292
G165
PRT
A. thaliana
Paralogous to G159


299
G166
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G164


300
G166
PRT
A. thaliana
Paralogous to G164


313
G168
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G170, G2065


314
G168
PRT
A. thaliana
Paralogous to G170, G2065


319
G1750
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1421, G440, G864;






orthologous to G4079, G4080, G4283, G4284, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


320
G1750
PRT
A. thaliana
Paralogous to G1421, G440, G864; Orthologous to G4079, G4080,






G4283, G4284, G4285, G4286, G4287, G4288, G4289, G4290,






G4291, G4292, G4293


323
G1752
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2512


324
G1752
PRT
A. thaliana
Paralogous to G2512


325
G1755
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1754


326
G1755
PRT
A. thaliana
Paralogous to G1754


327
G1757
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1847


328
G1757
PRT
A. thaliana
Paralogous to G1847


331
G1759
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G157, G1842,






G1843, G1844, G859


332
G1759
PRT
A. thaliana
Paralogous to G157, G1842, G1843, G1844, G859


333
G1760
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G152, G153, G860;






orthologous to G3479, G3480, G3481, G3482, G3483, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


334
G1760
PRT
A. thaliana
Paralogous to G152, G153, G860; Orthologous to G3479, G3480,






G3481, G3482, G3483, G3484, G3485, G3487, G3488, G3489,






G3980, G3981, G3982


335
G1763
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1384


336
G1763
PRT
A. thaliana
Paralogous to G1384


353
G1789
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1911, G2721,






G997


354
G1789
PRT
A. thaliana
Paralogous to G1911, G2721, G997


357
G1797
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G149, G627, G1011,






G154, G1798; orthologous to G4061, G4062, G4063, G4064, G4065,






G4066, G4067


358
G1797
PRT
A. thaliana
Paralogous to G149, G627, G1011, G154, G1798; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


363
G1806
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G554, G555,






G556, G558, G578, G629


364
G1806
PRT
A. thaliana
Paralogous to G1198, G554, G555, G556, G558, G578, G629


365
G1807
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1050


366
G1807
PRT
A. thaliana
Paralogous to G1050


367
G1808
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1047


368
G1808
PRT
A. thaliana
Paralogous to G1047


369
G1809
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G557; orthologous to






G4627, G4630, G4631, G4632, G5158


370
G1809
PRT
A. thaliana
Paralogous to G557; Orthologous to G4627, G4630, G4631, G4632,






G5158


377
G1821
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G620; orthologous to






G3839, G3937, G3939


378
G1821
PRT
A. thaliana
Paralogous to G620; Orthologous to G3839, G3937, G3939


381
G1836
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1818


382
G1836
PRT
A. thaliana
Paralogous to G1818


383
G1838
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2572


384
G1838
PRT
A. thaliana
Paralogous to G2572


385
G1839
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1749, G1840


386
G1839
PRT
A. thaliana
Paralogous to G1749, G1840


387
G1842
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G157, G1759,






G1843, G1844, G859


388
G1842
PRT
A. thaliana
Paralogous to G157, G1759, G1843, G1844, G859


389
G1843
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G157, G1759,






G1842, G1844, G859


390
G1843
PRT
A. thaliana
Paralogous to G157, G1759, G1842, G1844, G859


391
G1844
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G157, G1759,






G1842, G1843, G859


392
G1844
PRT
A. thaliana
Paralogous to G157, G1759, G1842, G1843, G859


393
G1847
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1757


394
G1847
PRT
A. thaliana
Paralogous to G1757


395
G1850
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1181


396
G1850
PRT
A. thaliana
Paralogous to G1181


397
G1855
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1186


398
G1855
PRT
A. thaliana
Paralogous to G1186


399
G1863
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2334


400
G1863
PRT
A. thaliana
Paralogous to G2334


403
G1881
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G902


404
G1881
PRT
A. thaliana
Paralogous to G902


407
G1888
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1482; orthologous






to G5159


408
G1888
PRT
A. thaliana
Paralogous to G1482; Orthologous to G5159


415
G19
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G3851


416
G19
PRT
A. thaliana
Orthologous to G3851


419
G1901
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1902


420
G1901
PRT
A. thaliana
Paralogous to G1902


421
G1903
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1895


422
G1903
PRT
A. thaliana
Paralogous to G1895


425
G1917
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G383


426
G1917
PRT
A. thaliana
Paralogous to G383


439
G1944
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G605


440
G1944
PRT
A. thaliana
Paralogous to G605


447
G1959
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1197


448
G1959
PRT
A. thaliana
Paralogous to G1197


449
G1965
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1891


450
G1965
PRT
A. thaliana
Paralogous to G1891


457
G1987
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1986


458
G1987
PRT
A. thaliana
Paralogous to G1986


461
G1991
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2888


462
G1991
PRT
A. thaliana
Paralogous to G2888


463
G2
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1416


464
G2
PRT
A. thaliana
Paralogous to G1416


469
G2006
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G208


470
G2006
PRT
A. thaliana
Paralogous to G208


471
G2007
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G231


472
G2007
PRT
A. thaliana
Paralogous to G231


475
G2015
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2016, G2017


476
G2015
PRT
A. thaliana
Paralogous to G2016, G2017


477
G2018
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2022


478
G2018
PRT
A. thaliana
Paralogous to G2022


479
G2020
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2023, G2025


480
G2020
PRT
A. thaliana
Paralogous to G2023, G2025


481
G204
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2717, G2709


482
G204
PRT
A. thaliana
Paralogous to G2717, G2709


483
G2053
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G515, G516, G517


484
G2053
PRT
A. thaliana
Paralogous to G515, G516, G517


485
G2057
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G618


486
G2057
PRT
A. thaliana
Paralogous to G618


489
G206
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1307


490
G206
PRT
A. thaliana
Paralogous to G1307


493
G2062
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2063, G2297,






G2689


494
G2062
PRT
A. thaliana
Paralogous to G2063, G2297, G2689


495
G2063
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2062, G2297,






G2689


496
G2063
PRT
A. thaliana
Paralogous to G2062, G2297, G2689


499
G2071
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1058


500
G2071
PRT
A. thaliana
Paralogous to G1058


513
G2094
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1508


514
G2094
PRT
A. thaliana
Paralogous to G1508


515
G21
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1381


516
G21
PRT
A. thaliana
Paralogous to G1381


517
G210
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2426


518
G210
PRT
A. thaliana
Paralogous to G2426


521
G2107
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G40, G2513, G41,






G42, G912; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


522
G2107
PRT
A. thaliana
Paralogous to G40, G2513, G41, G42, G912; Orthologous to G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


537
G2130
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1008


538
G2130
PRT
A. thaliana
Paralogous to G1008


547
G2144
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1942


548
G2144
PRT
A. thaliana
Paralogous to G1942


549
G2145
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2148


550
G2145
PRT
A. thaliana
Paralogous to G2148


553
G2148
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2145


554
G2148
PRT
A. thaliana
Paralogous to G2145


559
G2156
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1067, G1073;






orthologous to G3399, G3400


560
G2156
PRT
A. thaliana
Paralogous to G1067, G1073; Orthologous to G3399, G3400


561
G2157
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G4570


562
G2157
PRT
A. thaliana
Orthologous to G4570


563
G216
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2719


564
G216
PRT
A. thaliana
Paralogous to G2719


569
G22
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1006, G28;






orthologous to G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3857, G3858, G3864, G3865, G4626, G5171


570
G22
PRT
A. thaliana
Paralogous to G1006, G28; Orthologous to G3430, G3659, G3660,






G3661, G3717, G3718, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


573
G2215
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2216


574
G2215
PRT
A. thaliana
Paralogous to G2216


587
G225
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1816, G226,






G2718, G682, G3930; orthologous to G3392, G3393, G3431, G3444,






G3445, G3446, G3447, G3448, G3449, G3450


588
G225
PRT
A. thaliana
Paralogous to G1816, G226, G2718, G682, G3930; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


595
G227
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G207, G230, G242;






orthologous to G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232, G4234, G4235, G4236, G4237, G4238


596
G227
PRT
A. thaliana
Paralogous to G207, G230, G242; Orthologous to G4218, G4219,






G4220, G4221, G4222, G4223, G4224, G4225, G4226, G4227,






G4228, G4229, G4230, G4231, G4232, G4234, G4235, G4236,






G4237, G4238


597
G229
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G678


598
G229
PRT
A. thaliana
Paralogous to G678


609
G2299
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G16


610
G2299
PRT
A. thaliana
Paralogous to G16


617
G2316
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1817


618
G2316
PRT
A. thaliana
Paralogous to G1817


621
G232
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G234


622
G232
PRT
A. thaliana
Paralogous to G234


623
G2334
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1863


624
G2334
PRT
A. thaliana
Paralogous to G1863


625
G2342
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2427


626
G2342
PRT
A. thaliana
Paralogous to G2427


629
G2344
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G929; orthologous to






G4267, G4268


630
G2344
PRT
A. thaliana
Paralogous to G929; Orthologous to G4267, G4268


631
G236
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2715


632
G236
PRT
A. thaliana
Paralogous to G2715


633
G237
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1309


634
G237
PRT
A. thaliana
Paralogous to G1309


635
G2371
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G925


636
G2371
PRT
A. thaliana
Paralogous to G925


641
G2377
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2379


642
G2377
PRT
A. thaliana
Paralogous to G2379


645
G2394
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1108


646
G2394
PRT
A. thaliana
Paralogous to G1108


649
G241
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G233; orthologous to






G4306, G4307, G4308, G4309, G4310


650
G241
PRT
A. thaliana
Paralogous to G233; Orthologous to G4306, G4307, G4308, G4309,






G4310


653
G242
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G207, G227, G230;






orthologous to G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232, G4234, G4235, G4236, G4237, G4238


654
G242
PRT
A. thaliana
Paralogous to G207, G227, G230; Orthologous to G4218, G4219,






G4220, G4221, G4222, G4223, G4224, G4225, G4226, G4227,






G4228, G4229, G4230, G4231, G4232, G4234, G4235, G4236,






G4237, G4238


655
G2421
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1329, G2422,






G663


656
G2421
PRT
A. thaliana
Paralogous to G1329, G2422, G663


657
G2422
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1329, G2421,






G663


658
G2422
PRT
A. thaliana
Paralogous to G1329, G2421, G663


661
G2426
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G210


662
G2426
PRT
A. thaliana
Paralogous to G210


663
G2427
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2342


664
G2427
PRT
A. thaliana
Paralogous to G2342


665
G243
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G201, G202


666
G243
PRT
A. thaliana
Paralogous to G201, G202


667
G2437
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1507


668
G2437
PRT
A. thaliana
Paralogous to G1507


671
G2452
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1638, G1641,






G1634, G2701


672
G2452
PRT
A. thaliana
Paralogous to G1638, G1641, G1634, G2701


673
G2454
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2456


674
G2454
PRT
A. thaliana
Paralogous to G2456


675
G2457
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2459


676
G2457
PRT
A. thaliana
Paralogous to G2459


681
G2484
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1232


682
G2484
PRT
A. thaliana
Paralogous to G1232


685
G2505
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2635


686
G2505
PRT
A. thaliana
Paralogous to G2635


691
G2535
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G957, G961


692
G2535
PRT
A. thaliana
Paralogous to G957, G961


693
G2546
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2550


694
G2546
PRT
A. thaliana
Paralogous to G2550


695
G255
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G197, G664;






orthologous to G3503, G3504, G3505, G3506, G3507, G3508,






G3509, G3529, G3531, G3532, G3533, G3534, G3527, G3528,






G4637, G4638, G4639, G4640


696
G255
PRT
A. thaliana
Paralogous to G197, G664; Orthologous to G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3529, G3531, G3532, G3533,






G3534, G3527, G3528, G4637, G4638, G4639, G4640


697
G2550
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2546


698
G2550
PRT
A. thaliana
Paralogous to G2546


701
G2553
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2556


702
G2553
PRT
A. thaliana
Paralogous to G2556


705
G2555
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1134


706
G2555
PRT
A. thaliana
Paralogous to G1134


707
G2556
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2553


708
G2556
PRT
A. thaliana
Paralogous to G2553


711
G2574
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2110


712
G2574
PRT
A. thaliana
Paralogous to G2110


723
G2586
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2587, G2686


724
G2586
PRT
A. thaliana
Paralogous to G2587, G2686


733
G261
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G265


734
G261
PRT
A. thaliana
Paralogous to G265


735
G2616
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2809


736
G2616
PRT
A. thaliana
Paralogous to G2809


741
G2632
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G926; orthologous to






G3924, G4261


742
G2632
PRT
A. thaliana
Paralogous to G926; Orthologous to G3924, G4261


743
G2639
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2640, G2642


744
G2639
PRT
A. thaliana
Paralogous to G2640, G2642


747
G2640
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2639, G2642


748
G2640
PRT
A. thaliana
Paralogous to G2639, G2642


749
G265
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G261


750
G265
PRT
A. thaliana
Paralogous to G261


751
G2650
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G617


752
G2650
PRT
A. thaliana
Paralogous to G617


753
G2655
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1879


754
G2655
PRT
A. thaliana
Paralogous to G1879


761
G268
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2876, G820


762
G268
PRT
A. thaliana
Paralogous to G2876, G820


765
G2686
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2586, G2587


766
G2686
PRT
A. thaliana
Paralogous to G2586, G2587


769
G2696
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2698


770
G2696
PRT
A. thaliana
Paralogous to G2698


771
G2697
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1768, G2633,






G313, G852; orthologous to G3815, G3825


772
G2697
PRT
A. thaliana
Paralogous to G1768, G2633, G313, G852; Orthologous to G3815,






G3825


773
G2699
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G314


774
G2699
PRT
A. thaliana
Paralogous to G314


781
G2715
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G236


782
G2715
PRT
A. thaliana
Paralogous to G236


783
G2719
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G216


784
G2719
PRT
A. thaliana
Paralogous to G216


787
G2721
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1789, G1911,






G997


788
G2721
PRT
A. thaliana
Paralogous to G1789, G1911, G997


793
G273
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G819


794
G273
PRT
A. thaliana
Paralogous to G819


795
G2739
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G312


796
G2739
PRT
A. thaliana
Paralogous to G312


797
G274
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G833


798
G274
PRT
A. thaliana
Paralogous to G833


799
G2742
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1492


800
G2742
PRT
A. thaliana
Paralogous to G1492


801
G2747
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1010


802
G2747
PRT
A. thaliana
Paralogous to G1010


809
G2766
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2149; orthologous






to G3763, G3764, G3740, G3741, G3772


810
G2766
PRT
A. thaliana
Paralogous to G2149; Orthologous to G3763, G3764, G3740, G3741,






G3772


815
G2779
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2859


816
G2779
PRT
A. thaliana
Paralogous to G2859


817
G2789
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G596; orthologous to






G3457


818
G2789
PRT
A. thaliana
Paralogous to G596; Orthologous to G3457


819
G279
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1029, G1033


820
G279
PRT
A. thaliana
Paralogous to G1029, G1033


823
G2791
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G589, G1061;






orthologous to G3748, G3749, G3774, G3760


824
G2791
PRT
A. thaliana
Paralogous to G589, G1061; Orthologous to G3748, G3749, G3774,






G3760


827
G28
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G22, G1006;






orthologous to G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3857, G3858, G3864, G3865, G4626, G5171


828
G28
PRT
A. thaliana
Paralogous to G22, G1006; Orthologous to G3430, G3659, G3660,






G3661, G3717, G3718, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


833
G2802
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1672


834
G2802
PRT
A. thaliana
Paralogous to G1672


839
G2809
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2616


840
G2809
PRT
A. thaliana
Paralogous to G2616


841
G2818
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2817


842
G2818
PRT
A. thaliana
Paralogous to G2817


843
G2826
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1995, G2838,






G361, G362, G370


844
G2826
PRT
A. thaliana
Paralogous to G1995, G2838, G361, G362, G370


845
G2831
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G903


846
G2831
PRT
A. thaliana
Paralogous to G903


851
G2838
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1995, G2826,






G361, G362, G370


852
G2838
PRT
A. thaliana
Paralogous to G1995, G2826, G361, G362, G370


853
G2840
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2834


854
G2840
PRT
A. thaliana
Paralogous to G2834


861
G2855
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2158


862
G2855
PRT
A. thaliana
Paralogous to G2158


867
G2876
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G268, G820


868
G2876
PRT
A. thaliana
Paralogous to G268, G820


873
G2887
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G521


874
G2887
PRT
A. thaliana
Paralogous to G521


877
G2893
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1324


878
G2893
PRT
A. thaliana
Paralogous to G1324


879
G2896
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2895


880
G2896
PRT
A. thaliana
Paralogous to G2895


883
G29
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1419, G43, G46,






G1004; orthologous to G3849


884
G29
PRT
A. thaliana
Paralogous to G1419, G43, G46, G1004; Orthologous to G3849


885
G290
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G289


886
G290
PRT
A. thaliana
Paralogous to G289


887
G2902
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2903


888
G2902
PRT
A. thaliana
Paralogous to G2903


911
G2965
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3065


912
G2965
PRT
A. thaliana
Paralogous to G3065


913
G2966
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3067


914
G2966
PRT
A. thaliana
Paralogous to G3067


917
G2979
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2980


918
G2979
PRT
A. thaliana
Paralogous to G2980


919
G2980
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2979


920
G2980
PRT
A. thaliana
Paralogous to G2979


921
G2982
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2981


922
G2982
PRT
A. thaliana
Paralogous to G2981


927
G2989
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2990; orthologous






to G3680, G3681, G3691, G3859, G3860, G3861, G3934


928
G2989
PRT
A. thaliana
Paralogous to G2990; Orthologous to G3680, G3681, G3691, G3859,






G3860, G3861, G3934


929
G2990
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2989; orthologous






to G3680, G3681, G3691, G3859, G3860, G3861, G3934


930
G2990
PRT
A. thaliana
Paralogous to G2989; Orthologous to G3680, G3681, G3691, G3859,






G3860, G3861, G3934


933
G2993
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2994


934
G2993
PRT
A. thaliana
Paralogous to G2994


939
G2998
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2999; orthologous






to G3663


940
G2998
PRT
A. thaliana
Paralogous to G2999; Orthologous to G3663


941
G2999
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2998; orthologous






to G3663


942
G2999
PRT
A. thaliana
Paralogous to G2998; Orthologous to G3663


943
G3
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G10


944
G3
PRT
A. thaliana
Paralogous to G10


945
G30
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1791, G1792,






G1795; orthologous to G3380, G3381, G3383, G3515, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3737, G3794,






G3739, G3929, G4328, G4329, G4330


946
G30
PRT
A. thaliana
Paralogous to G1791, G1792, G1795; Orthologous to G3380, G3381,






G3383, G3515, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3737, G3794, G3739, G3929, G4328, G4329, G4330


951
G3009
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2738, G307, G308,






G309; orthologous to G3816, G3817, G3818, G3819


952
G3009
PRT
A. thaliana
Paralogous to G2738, G307, G308, G309; Orthologous to G3816,






G3817, G3818, G3819


961
G3034
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1040, G729, G730


962
G3034
PRT
A. thaliana
Paralogous to G1040, G729, G730


967
G3041
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G760


968
G3041
PRT
A. thaliana
Paralogous to G760


973
G306
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G3821, G3822


974
G306
PRT
A. thaliana
Orthologous to G3821, G3822


983
G3067
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2966


984
G3067
PRT
A. thaliana
Paralogous to G2966


985
G3074
DNA
A. thaliana
Predicted polypeptide sequence is orthologous to G4253, G4254,






G4255


986
G3074
PRT
A. thaliana
Orthologous to G4253, G4254, G4255


989
G3080
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3079


990
G3080
PRT
A. thaliana
Paralogous to G3079


991
G309
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2738, G3009,






G307, G308; orthologous to G3816, G3817, G3818, G3819


992
G309
PRT
A. thaliana
Paralogous to G2738, G3009, G307, G308; Orthologous to G3816,






G3817, G3818, G3819


1009
G326
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1337


1010
G326
PRT
A. thaliana
Paralogous to G1337


1011
G328
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2436, G2443


1012
G328
PRT
A. thaliana
Paralogous to G2436, G2443


1021
G35
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2138


1022
G35
PRT
A. thaliana
Paralogous to G2138


1023
G350
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G351, G545


1024
G350
PRT
A. thaliana
Paralogous to G351, G545


1025
G351
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G350, G545


1026
G351
PRT
A. thaliana
Paralogous to G350, G545


1027
G352
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2827


1028
G352
PRT
A. thaliana
Paralogous to G2827


1029
G354
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1889, G1974,






G2839, G353


1030
G354
PRT
A. thaliana
Paralogous to G1889, G1974, G2839, G353


1033
G36
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1748


1034
G36
PRT
A. thaliana
Paralogous to G1748


1035
G362
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1995, G2826,






G2838, G361, G370


1036
G362
PRT
A. thaliana
Paralogous to G1995, G2826, G2838, G361, G370


1045
G383
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1917


1046
G383
PRT
A. thaliana
Paralogous to G1917


1047
G385
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1588, G384


1048
G385
PRT
A. thaliana
Paralogous to G1588, G384


1049
G392
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1548, G390, G391,






G438


1050
G392
PRT
A. thaliana
Paralogous to G1548, G390, G391, G438


1051
G399
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G398, G964


1052
G399
PRT
A. thaliana
Paralogous to G398, G964


1053
G4
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G14; orthologous to






G3957, G3974


1054
G4
PRT
A. thaliana
Paralogous to G14; Orthologous to G3957, G3974


1055
G406
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G699


1056
G406
PRT
A. thaliana
Paralogous to G699


1059
G411
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2548


1060
G411
PRT
A. thaliana
Paralogous to G2548


1061
G413
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G713


1062
G413
PRT
A. thaliana
Paralogous to G713


1067
G426
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2545, G425, G427


1068
G426
PRT
A. thaliana
Paralogous to G2545, G425, G427


1069
G428
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1594


1070
G428
PRT
A. thaliana
Paralogous to G1594


1071
G43
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1419, G46, G1004,






G29; orthologous to G3849


1072
G43
PRT
A. thaliana
Paralogous to G1419, G46, G1004, G29; Orthologous to G3849


1077
G440
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1750, G1421,






G864; orthologous to G4079, G4080, G4283, G4284, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


1078
G440
PRT
A. thaliana
Paralogous to G1750, G1421, G864; Orthologous to G4079, G4080,






G4283, G4284, G4285, G4286, G4287, G4288, G4289, G4290,






G4291, G4292, G4293


1079
G443
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G449, G451, G452


1080
G443
PRT
A. thaliana
Paralogous to G449, G451, G452


1081
G449
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G443, G451, G452


1082
G449
PRT
A. thaliana
Paralogous to G443, G451, G452


1083
G450
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G448, G455, G456


1084
G450
PRT
A. thaliana
Paralogous to G448, G455, G456


1085
G451
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G443, G449, G452


1086
G451
PRT
A. thaliana
Paralogous to G443, G449, G452


1087
G452
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G443, G449, G451


1088
G452
PRT
A. thaliana
Paralogous to G443, G449, G451


1089
G463
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G464


1090
G463
PRT
A. thaliana
Paralogous to G464


1091
G467
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1390


1092
G467
PRT
A. thaliana
Paralogous to G1390


1093
G468
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2866


1094
G468
PRT
A. thaliana
Paralogous to G2866


1095
G47
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2133; orthologous






to G3643, G3644, G3645, G3646, G3647, G3649, G3650, G3651


1096
G47
PRT
A. thaliana
Paralogous to G2133; Orthologous to G3643, G3644, G3645, G3646,






G3647, G3649, G3650, G3651


1097
G481
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1364, G2345,






G482, G485; orthologous to G3394, G3395, G3396, G3397, G3398,






G3429, G3434, G3435, G3436, G3437, G3470, G3471, G3472,






G3473, G3474, G3475, G3476, G3478, G3866, G3868, G3870,






G3873, G3874, G3875, G3876, G3938, G4272, G4276


1098
G481
PRT
A. thaliana
Paralogous to G1364, G2345, G482, G485; Orthologous to G3394,






G3395, G3396, G3397, G3398, G3429, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


1099
G482
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1364, G2345,






G481, G485; orthologous to G3394, G3395, G3396, G3397, G3398,






G3429, G3434, G3435, G3436, G3437, G3470, G3471, G3472,






G3473, G3474, G3475, G3476, G3478, G3866, G3868, G3870,






G3873, G3874, G3875, G3876, G3938, G4272, G4276


1100
G482
PRT
A. thaliana
Paralogous to G1364, G2345, G481, G485; Orthologous to G3394,






G3395, G3396, G3397, G3398, G3429, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


1101
G485
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1364, G2345,






G481, G482; orthologous to G3394, G3395, G3396, G3397, G3398,






G3429, G3434, G3435, G3436, G3437, G3470, G3471, G3472,






G3473, G3474, G3475, G3476, G3478, G3866, G3868, G3870,






G3873, G3874, G3875, G3876, G3938, G4272, G4276


1102
G485
PRT
A. thaliana
Paralogous to G1364, G2345, G481, G482; Orthologous to G3394,






G3395, G3396, G3397, G3398, G3429, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


1103
G489
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G714; orthologous to






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


1104
G489
PRT
A. thaliana
Paralogous to G714; Orthologous to G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


1105
G501
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G502, G519, G767


1106
G501
PRT
A. thaliana
Paralogous to G502, G519, G767


1109
G513
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1426, G1455,






G960


1110
G513
PRT
A. thaliana
Paralogous to G1426, G1455, G960


1111
G519
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G501, G502, G767


1112
G519
PRT
A. thaliana
Paralogous to G501, G502, G767


1113
G522
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1355,






G1453, G1766, G2534, G761


1114
G522
PRT
A. thaliana
Paralogous to G1354, G1355, G1453, G1766, G2534, G761


1115
G525
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G514, G523, G764


1116
G525
PRT
A. thaliana
Paralogous to G514, G523, G764


1119
G529
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G530, G531,






G532, G533, G534, G535, G536, G537


1120
G529
PRT
A. thaliana
Paralogous to G528, G530, G531, G532, G533, G534, G535, G536,






G537


1121
G530
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G531,






G532, G533, G534, G535, G536, G537


1122
G530
PRT
A. thaliana
Paralogous to G528, G529, G531, G532, G533, G534, G535, G536,






G537


1123
G531
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G532, G533, G534, G535, G536, G537


1124
G531
PRT
A. thaliana
Paralogous to G528, G529, G530, G532, G533, G534, G535, G536,






G537


1125
G532
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G533, G534, G535, G536, G537


1126
G532
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G533, G534, G535, G536,






G537


1127
G547
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1832


1128
G547
PRT
A. thaliana
Paralogous to G1832


1131
G556
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G554, G555, G558, G578, G629


1132
G556
PRT
A. thaliana
Paralogous to G1198, G1806, G554, G555, G558, G578, G629


1133
G558
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G554, G555, G556, G578, G629


1134
G558
PRT
A. thaliana
Paralogous to G1198, G1806, G554, G555, G556, G578, G629


1135
G559
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G631


1136
G559
PRT
A. thaliana
Paralogous to G631


1137
G562
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G561


1138
G562
PRT
A. thaliana
Paralogous to G561


1143
G568
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G580


1144
G568
PRT
A. thaliana
Paralogous to G580


1145
G577
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1078


1146
G577
PRT
A. thaliana
Paralogous to G1078


1149
G580
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G568


1150
G580
PRT
A. thaliana
Paralogous to G568


1153
G591
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G793; orthologous to






G3752, G3753, G3751, G3750, G4311, G4312, G4313


1154
G591
PRT
A. thaliana
Paralogous to G793; Orthologous to G3752, G3753, G3751, G3750,






G4311, G4312, G4313


1157
G596
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2789; orthologous






to G3457


1158
G596
PRT
A. thaliana
Paralogous to G2789; Orthologous to G3457


1161
G599
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2159, G2781


1162
G599
PRT
A. thaliana
Paralogous to G2159, G2781


1169
G631
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G559


1170
G631
PRT
A. thaliana
Paralogous to G559


1183
G653
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G654


1184
G653
PRT
A. thaliana
Paralogous to G654


1189
G659
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1323


1190
G659
PRT
A. thaliana
Paralogous to G1323


1191
G663
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1329, G2421,






G2422


1192
G663
PRT
A. thaliana
Paralogous to G1329, G2421, G2422


1193
G664
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G197, G255;






orthologous to G3503, G3504, G3505, G3506, G3507, G3508,






G3509, G3529, G3531, G3532, G3533, G3534, G3527, G3528,






G4637, G4638, G4639, G4640


1194
G664
PRT
A. thaliana
Paralogous to G197, G255; Orthologous to G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3529, G3531, G3532, G3533,






G3534, G3527, G3528, G4637, G4638, G4639, G4640


1197
G666
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G256, G668, G932;






orthologous to G3384, G3385, G3386, G3500, G3501, G3502,






G3537, G3538, G3539, G3540, G3541


1198
G666
PRT
A. thaliana
Paralogous to G256, G668, G932; Orthologous to G3384, G3385,






G3386, G3500, G3501, G3502, G3537, G3538, G3539, G3540,






G3541


1205
G682
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1816, G225, G226,






G2718, G3930; orthologous to G3392, G3393, G3431, G3444,






G3445, G3446, G3447, G3448, G3449, G3450


1206
G682
PRT
A. thaliana
Paralogous to G1816, G225, G226, G2718, G3930; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


1207
G699
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G406


1208
G699
PRT
A. thaliana
Paralogous to G406


1211
G707
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G386


1212
G707
PRT
A. thaliana
Paralogous to G386


1213
G714
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G489; orthologous to






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


1214
G714
PRT
A. thaliana
Paralogous to G489; Orthologous to G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


1215
G715
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1646; orthologous






to G3883, G3884, G3885, G3886, G3889, G3543, G4259


1216
G715
PRT
A. thaliana
Paralogous to G1646; Orthologous to G3883, G3884, G3885, G3886,






G3889, G3543, G4259


1219
G721
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1041, G724


1220
G721
PRT
A. thaliana
Paralogous to G1041, G724


1221
G722
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1037


1222
G722
PRT
A. thaliana
Paralogous to G1037


1223
G724
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1041, G721


1224
G724
PRT
A. thaliana
Paralogous to G1041, G721


1225
G727
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1493


1226
G727
PRT
A. thaliana
Paralogous to G1493


1227
G730
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1040, G3034,






G729


1228
G730
PRT
A. thaliana
Paralogous to G1040, G3034, G729


1229
G732
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1035


1230
G732
PRT
A. thaliana
Paralogous to G1035


1231
G748
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1900


1232
G748
PRT
A. thaliana
Paralogous to G1900


1239
G763
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G524


1240
G763
PRT
A. thaliana
Paralogous to G524


1241
G764
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G514, G523, G525


1242
G764
PRT
A. thaliana
Paralogous to G514, G523, G525


1247
G789
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1494


1248
G789
PRT
A. thaliana
Paralogous to G1494


1249
G790
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G593


1250
G790
PRT
A. thaliana
Paralogous to G593


1251
G792
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G791


1252
G792
PRT
A. thaliana
Paralogous to G791


1253
G793
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G591; orthologous to






G3752, G3753, G3751, G3750, G4311, G4312, G4313


1254
G793
PRT
A. thaliana
Paralogous to G591; Orthologous to G3752, G3753, G3751, G3750,






G4311, G4312, G4313


1257
G810
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G807; orthologous to






G3491, G3494, G3495, G3512


1258
G810
PRT
A. thaliana
Paralogous to G807; Orthologous to G3491, G3494, G3495, G3512


1261
G812
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2467


1262
G812
PRT
A. thaliana
Paralogous to G2467


1263
G819
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G273


1264
G819
PRT
A. thaliana
Paralogous to G273


1273
G881
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G986


1274
G881
PRT
A. thaliana
Paralogous to G986


1277
G896
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1349, G1887


1278
G896
PRT
A. thaliana
Paralogous to G1349, G1887


1279
G897
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1480, G899


1280
G897
PRT
A. thaliana
Paralogous to G1480, G899


1281
G902
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1881


1282
G902
PRT
A. thaliana
Paralogous to G1881


1293
G927
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1334


1294
G927
PRT
A. thaliana
Paralogous to G1334


1295
G929
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2344; orthologous






to G4267, G4268


1296
G929
PRT
A. thaliana
Paralogous to G2344; Orthologous to G4267, G4268


1297
G934
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2869, G2870,






G2871, G2872, G2873


1298
G934
PRT
A. thaliana
Paralogous to G2869, G2870, G2871, G2872, G2873


1303
G938
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G940, G941


1304
G938
PRT
A. thaliana
Paralogous to G940, G941


1307
G941
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G938, G940


1308
G941
PRT
A. thaliana
Paralogous to G938, G940


1309
G961
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2535, G957


1310
G961
PRT
A. thaliana
Paralogous to G2535, G957


1315
G975
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1387, G2583;






orthologous to G4294


1316
G975
PRT
A. thaliana
Paralogous to G1387, G2583; Orthologous to G4294


1317
G976
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G913, G2514,






G1753


1318
G976
PRT
A. thaliana
Paralogous to G913, G2514, G1753


1319
G979
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2106, G2131


1320
G979
PRT
A. thaliana
Paralogous to G2106, G2131


1325
G993
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1930, G867, G9;






orthologous to G3388, G3389, G3390, G3391, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1326
G993
PRT
A. thaliana
Paralogous to G1930, G867, G9; Orthologous to G3388, G3389,






G3390, G3391, G3432, G3433, G3451, G3452, G3453, G3454,






G3455


1327
G997
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1789, G1911,






G2721


1328
G997
PRT
A. thaliana
Paralogous to G1789, G1911, G2721


1331
G10
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3


1332
G10
PRT
A. thaliana
Paralogous to G3


1333
G1010
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2747


1334
G1010
PRT
A. thaliana
Paralogous to G2747


1335
G1011
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G149, G627, G154,






G1797, G1798; orthologous to G4061, G4062, G4063, G4064,






G4065, G4066, G4067


1336
G1011
PRT
A. thaliana
Paralogous to G149, G627, G154, G1797, G1798; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


1337
G1029
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1033, G279


1338
G1029
PRT
A. thaliana
Paralogous to G1033, G279


1339
G1035
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G732


1340
G1035
PRT
A. thaliana
Paralogous to G732


1341
G1037
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G722


1342
G1037
PRT
A. thaliana
Paralogous to G722


1343
G1040
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3034, G729, G730


1344
G1040
PRT
A. thaliana
Paralogous to G3034, G729, G730


1345
G1041
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G721, G724


1346
G1041
PRT
A. thaliana
Paralogous to G721, G724


1347
G1047
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1808


1348
G1047
PRT
A. thaliana
Paralogous to G1808


1349
G1050
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1807


1350
G1050
PRT
A. thaliana
Paralogous to G1807


1351
G1058
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2071


1352
G1058
PRT
A. thaliana
Paralogous to G2071


1353
G1061
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G589, G2791;






orthologous to G3748, G3749, G3774, G3760


1354
G1061
PRT
A. thaliana
Paralogous to G589, G2791; Orthologous to G3748, G3749, G3774,






G3760


1355
G1073
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1067, G2156;






orthologous to G3399, G3400


1356
G1073
PRT
A. thaliana
Paralogous to G1067, G2156; Orthologous to G3399, G3400


1357
G1075
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1076; orthologous






to G3406, G3407, G3458, G3459, G3460, G3461


1358
G1075
PRT
A. thaliana
Paralogous to G1076; Orthologous to G3406, G3407, G3458, G3459,






G3460, G3461


1359
G1108
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2394


1360
G1108
PRT
A. thaliana
Paralogous to G2394


1361
G1149
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1146, G1152


1362
G1149
PRT
A. thaliana
Paralogous to G1146, G1152


1363
G1152
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1146, G1149


1364
G1152
PRT
A. thaliana
Paralogous to G1146, G1149


1365
G1181
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1850


1366
G1181
PRT
A. thaliana
Paralogous to G1850


1367
G1186
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1855


1368
G1186
PRT
A. thaliana
Paralogous to G1855


1369
G1197
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1959


1370
G1197
PRT
A. thaliana
Paralogous to G1959


1371
G12
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1277, G1379, G24;






orthologous to G3656


1372
G12
PRT
A. thaliana
Paralogous to G1277, G1379, G24; Orthologous to G3656


1373
G1227
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1228


1374
G1227
PRT
A. thaliana
Paralogous to G1228


1375
G1232
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2484


1376
G1232
PRT
A. thaliana
Paralogous to G2484


1377
G1241
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1240


1378
G1241
PRT
A. thaliana
Paralogous to G1240


1379
G1242
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1243


1380
G1242
PRT
A. thaliana
Paralogous to G1243


1381
G1245
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1247


1382
G1245
PRT
A. thaliana
Paralogous to G1247


1383
G1277
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G12, G1379, G24;






orthologous to G3656


1384
G1277
PRT
A. thaliana
Paralogous to G12, G1379, G24; Orthologous to G3656


1385
G129
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G136, G140, G146


1386
G129
PRT
A. thaliana
Paralogous to G136, G140, G146


1387
G1307
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G206


1388
G1307
PRT
A. thaliana
Paralogous to G206


1389
G1321
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1320


1390
G1321
PRT
A. thaliana
Paralogous to G1320


1391
G1323
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G659


1392
G1323
PRT
A. thaliana
Paralogous to G659


1393
G1325
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1313


1394
G1325
PRT
A. thaliana
Paralogous to G1313


1395
G1329
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2421, G2422,






G663


1396
G1329
PRT
A. thaliana
Paralogous to G2421, G2422, G663


1397
G1334
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G927


1398
G1334
PRT
A. thaliana
Paralogous to G927


1399
G1337
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G326


1400
G1337
PRT
A. thaliana
Paralogous to G326


1401
G136
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G129, G140, G146


1402
G136
PRT
A. thaliana
Paralogous to G129, G140, G146


1403
G1381
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G21


1404
G1381
PRT
A. thaliana
Paralogous to G21


1405
G1387
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2583, G975;






orthologous to G4294


1406
G1387
PRT
A. thaliana
Paralogous to G2583, G975; Orthologous to G4294


1407
G1390
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G467


1408
G1390
PRT
A. thaliana
Paralogous to G467


1409
G1396
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1394, G1395


1410
G1396
PRT
A. thaliana
Paralogous to G1394, G1395


1411
G14
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G4; orthologous to






G3957, G3974


1412
G14
PRT
A. thaliana
Paralogous to G4; Orthologous to G3957, G3974


1413
G1416
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2


1414
G1416
PRT
A. thaliana
Paralogous to G2


1415
G142
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G148


1416
G142
PRT
A. thaliana
Paralogous to G148


1417
G1424
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1423, G2988


1418
G1424
PRT
A. thaliana
Paralogous to G1423, G2988


1419
G1426
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1455, G513, G960


1420
G1426
PRT
A. thaliana
Paralogous to G1455, G513, G960


1421
G1453
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1355,






G1766, G2534, G522, G761


1422
G1453
PRT
A. thaliana
Paralogous to G1354, G1355, G1766, G2534, G522, G761


1423
G1455
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1426, G513, G960


1424
G1455
PRT
A. thaliana
Paralogous to G1426, G513, G960


1425
G1458
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1459, G1460


1426
G1458
PRT
A. thaliana
Paralogous to G1459, G1460


1427
G1459
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1458, G1460


1428
G1459
PRT
A. thaliana
Paralogous to G1458, G1460


1429
G1461
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1462, G1463,






G1464, G1465


1430
G1461
PRT
A. thaliana
Paralogous to G1462, G1463, G1464, G1465


1431
G1463
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1461, G1462,






G1464, G1465


1432
G1463
PRT
A. thaliana
Paralogous to G1461, G1462, G1464, G1465


1433
G1464
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1461, G1462,






G1463, G1465


1434
G1464
PRT
A. thaliana
Paralogous to G1461, G1462, G1463, G1465


1435
G1465
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1461, G1462,






G1463, G1464


1436
G1465
PRT
A. thaliana
Paralogous to G1461, G1462, G1463, G1464


1437
G1466
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G224, G1021, G223


1438
G1466
PRT
A. thaliana
Paralogous to G224, G1021, G223


1439
G1482
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1888; orthologous






to G5159


1440
G1482
PRT
A. thaliana
Paralogous to G1888; Orthologous to G5159


1441
G1489
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1488


1442
G1489
PRT
A. thaliana
Paralogous to G1488


1443
G149
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G627, G1011, G154,






G1797, G1798; orthologous to G4061, G4062, G4063, G4064,






G4065, G4066, G4067


1444
G149
PRT
A. thaliana
Paralogous to G627, G1011, G154, G1797, G1798; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


1445
G1492
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2742


1446
G1492
PRT
A. thaliana
Paralogous to G2742


1447
G1493
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G727


1448
G1493
PRT
A. thaliana
Paralogous to G727


1449
G1507
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2437


1450
G1507
PRT
A. thaliana
Paralogous to G2437


1451
G1508
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2094


1452
G1508
PRT
A. thaliana
Paralogous to G2094


1453
G1509
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1506


1454
G1509
PRT
A. thaliana
Paralogous to G1506


1455
G152
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G153, G1760, G860;






orthologous to G3479, G3480, G3481, G3482, G3483, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1456
G152
PRT
A. thaliana
Paralogous to G153, G1760, G860; Orthologous to G3479, G3480,






G3481, G3482, G3483, G3484, G3485, G3487, G3488, G3489,






G3980, G3981, G3982


1457
G153
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G152, G1760, G860;






orthologous to G3479, G3480, G3481, G3482, G3483, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1458
G153
PRT
A. thaliana
Paralogous to G152, G1760, G860; Orthologous to G3479, G3480,






G3481, G3482, G3483, G3484, G3485, G3487, G3488, G3489,






G3980, G3981, G3982


1459
G1545
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1538, G412


1460
G1545
PRT
A. thaliana
Paralogous to G1538, G412


1461
G1548
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G390, G391, G392,






G438


1462
G1548
PRT
A. thaliana
Paralogous to G390, G391, G392, G438


1463
G1588
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G384, G385


1464
G1588
PRT
A. thaliana
Paralogous to G384, G385


1465
G1594
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G428


1466
G1594
PRT
A. thaliana
Paralogous to G428


1467
G16
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2299


1468
G16
PRT
A. thaliana
Paralogous to G2299


1469
G164
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G166


1470
G164
PRT
A. thaliana
Paralogous to G166


1471
G1641
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1638, G2452,






G1634, G2701


1472
G1641
PRT
A. thaliana
Paralogous to G1638, G2452, G1634, G2701


1473
G1664
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1062


1474
G1664
PRT
A. thaliana
Paralogous to G1062


1475
G1672
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2802


1476
G1672
PRT
A. thaliana
Paralogous to G2802


1477
G170
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G168, G2065


1478
G170
PRT
A. thaliana
Paralogous to G168, G2065


1479
G1748
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G36


1480
G1748
PRT
A. thaliana
Paralogous to G36


1481
G1749
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1839, G1840


1482
G1749
PRT
A. thaliana
Paralogous to G1839, G1840


1483
G1753
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G913, G2514, G976


1484
G1753
PRT
A. thaliana
Paralogous to G913, G2514, G976


1485
G1754
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1755


1486
G1754
PRT
A. thaliana
Paralogous to G1755


1487
G1766
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1355,






G1453, G2534, G522, G761


1488
G1766
PRT
A. thaliana
Paralogous to G1354, G1355, G1453, G2534, G522, G761


1489
G1768
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2633, G2697,






G313, G852; orthologous to G3815, G3825


1490
G1768
PRT
A. thaliana
Paralogous to G2633, G2697, G313, G852; Orthologous to G3815,






G3825


1491
G1779
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1510


1492
G1779
PRT
A. thaliana
Paralogous to G1510


1493
G1791
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1792, G1795, G30;






orthologous to G3380, G3381, G3383, G3515, G3516, G3517,






G3518, G3519, G3520, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1494
G1791
PRT
A. thaliana
Paralogous to G1792, G1795, G30; Orthologous to G3380, G3381,






G3383, G3515, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3737, G3794, G3739, G3929, G4328, G4329, G4330


1495
G1792
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1791, G1795, G30;






orthologous to G3380, G3381, G3383, G3515, G3516, G3517,






G3518, G3519, G3520, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1496
G1792
PRT
A. thaliana
Paralogous to G1791, G1795, G30; Orthologous to G3380, G3381,






G3383, G3515, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3737, G3794, G3739, G3929, G4328, G4329, G4330


1497
G1795
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1791, G1792, G30;






orthologous to G3380, G3381, G3383, G3515, G3516, G3517,






G3518, G3519, G3520, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1498
G1795
PRT
A. thaliana
Paralogous to G1791, G1792, G30; Orthologous to G3380, G3381,






G3383, G3515, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3737, G3794, G3739, G3929, G4328, G4329, G4330


1499
G1798
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G149, G627, G1011,






G154, G1797; orthologous to G4061, G4062, G4063, G4064, G4065,






G4066, G4067


1500
G1798
PRT
A. thaliana
Paralogous to G149, G627, G1011, G154, G1797; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


1501
G1816
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G225, G226, G2718,






G682, G3930; orthologous to G3392, G3393, G3431, G3444, G3445,






G3446, G3447, G3448, G3449, G3450


1502
G1816
PRT
A. thaliana
Paralogous to G225, G226, G2718, G682, G3930; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


1503
G1817
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2316


1504
G1817
PRT
A. thaliana
Paralogous to G2316


1505
G1818
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1836


1506
G1818
PRT
A. thaliana
Paralogous to G1836


1507
G1832
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G547


1508
G1832
PRT
A. thaliana
Paralogous to G547


1509
G1840
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1749, G1839


1510
G1840
PRT
A. thaliana
Paralogous to G1749, G1839


1511
G1846
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1007


1512
G1846
PRT
A. thaliana
Paralogous to G1007


1513
G1868
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1439


1514
G1868
PRT
A. thaliana
Paralogous to G1439


1515
G1879
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2655


1516
G1879
PRT
A. thaliana
Paralogous to G2655


1517
G1887
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1349, G896


1518
G1887
PRT
A. thaliana
Paralogous to G1349, G896


1519
G1889
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1974, G2839,






G353, G354


1520
G1889
PRT
A. thaliana
Paralogous to G1974, G2839, G353, G354


1521
G1891
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1965


1522
G1891
PRT
A. thaliana
Paralogous to G1965


1523
G1895
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1903


1524
G1895
PRT
A. thaliana
Paralogous to G1903


1525
G1900
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G748


1526
G1900
PRT
A. thaliana
Paralogous to G748


1527
G1902
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1901


1528
G1902
PRT
A. thaliana
Paralogous to G1901


1529
G1911
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1789, G2721,






G997


1530
G1911
PRT
A. thaliana
Paralogous to G1789, G2721, G997


1531
G1927
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1456, G2184


1532
G1927
PRT
A. thaliana
Paralogous to G1456, G2184


1533
G1929
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1478; orthologous






to G4019


1534
G1929
PRT
A. thaliana
Paralogous to G1478; Orthologous to G4019


1535
G1930
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G867, G9, G993;






orthologous to G3388, G3389, G3390, G3391, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1536
G1930
PRT
A. thaliana
Paralogous to G867, G9, G993; Orthologous to G3388, G3389,






G3390, G3391, G3432, G3433, G3451, G3452, G3453, G3454,






G3455


1537
G1942
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2144


1538
G1942
PRT
A. thaliana
Paralogous to G2144


1539
G197
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G255, G664;






orthologous to G3503, G3504, G3505, G3506, G3507, G3508,






G3509, G3529, G3531, G3532, G3533, G3534, G3527, G3528,






G4637, G4638, G4639, G4640


1540
G197
PRT
A. thaliana
Paralogous to G255, G664; Orthologous to G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3529, G3531, G3532, G3533,






G3534, G3527, G3528, G4637, G4638, G4639, G4640


1541
G1974
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1889, G2839,






G353, G354


1542
G1974
PRT
A. thaliana
Paralogous to G1889, G2839, G353, G354


1543
G1986
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1987


1544
G1986
PRT
A. thaliana
Paralogous to G1987


1545
G1995
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2826, G2838,






G361, G362, G370


1546
G1995
PRT
A. thaliana
Paralogous to G2826, G2838, G361, G362, G370


1547
G2003
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1256


1548
G2003
PRT
A. thaliana
Paralogous to G1256


1549
G201
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G202, G243


1550
G201
PRT
A. thaliana
Paralogous to G202, G243


1551
G2016
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2015, G2017


1552
G2016
PRT
A. thaliana
Paralogous to G2015, G2017


1553
G2017
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2015, G2016


1554
G2017
PRT
A. thaliana
Paralogous to G2015, G2016


1555
G202
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G201, G243


1556
G202
PRT
A. thaliana
Paralogous to G201, G243


1557
G2022
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2018


1558
G2022
PRT
A. thaliana
Paralogous to G2018


1559
G2023
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2020, G2025


1560
G2023
PRT
A. thaliana
Paralogous to G2020, G2025


1561
G2025
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2020, G2023


1562
G2025
PRT
A. thaliana
Paralogous to G2020, G2023


1563
G2065
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G168, G170


1564
G2065
PRT
A. thaliana
Paralogous to G168, G170


1565
G207
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G227, G230, G242;






orthologous to G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232, G4234, G4235, G4236, G4237, G4238


1566
G207
PRT
A. thaliana
Paralogous to G227, G230, G242; Orthologous to G4218, G4219,






G4220, G4221, G4222, G4223, G4224, G4225, G4226, G4227,






G4228, G4229, G4230, G4231, G4232, G4234, G4235, G4236,






G4237, G4238


1567
G208
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2006


1568
G208
PRT
A. thaliana
Paralogous to G2006


1569
G2106
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2131, G979


1570
G2106
PRT
A. thaliana
Paralogous to G2131, G979


1571
G2110
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2574


1572
G2110
PRT
A. thaliana
Paralogous to G2574


1573
G2128
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1491


1574
G2128
PRT
A. thaliana
Paralogous to G1491


1575
G2131
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2106, G979


1576
G2131
PRT
A. thaliana
Paralogous to G2106, G979


1577
G2133
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G47; orthologous to






G3643, G3644, G3645, G3646, G3647, G3649, G3650, G3651


1578
G2133
PRT
A. thaliana
Paralogous to G47; Orthologous to G3643, G3644, G3645, G3646,






G3647, G3649, G3650, G3651


1579
G2138
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G35


1580
G2138
PRT
A. thaliana
Paralogous to G35


1581
G2149
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2766; orthologous






to G3763, G3764, G3740, G3741, G3772


1582
G2149
PRT
A. thaliana
Paralogous to G2766; Orthologous to G3763, G3764, G3740, G3741,






G3772


1583
G2158
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2855


1584
G2158
PRT
A. thaliana
Paralogous to G2855


1585
G2159
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2781, G599


1586
G2159
PRT
A. thaliana
Paralogous to G2781, G599


1587
G2184
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1456, G1927


1588
G2184
PRT
A. thaliana
Paralogous to G1456, G1927


1589
G2216
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2215


1590
G2216
PRT
A. thaliana
Paralogous to G2215


1591
G223
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G224, G1021,






G1466


1592
G223
PRT
A. thaliana
Paralogous to G224, G1021, G1466


1593
G224
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1021, G1466,






G223


1594
G224
PRT
A. thaliana
Paralogous to G1021, G1466, G223


1595
G226
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1816, G225,






G2718, G682, G3930; orthologous to G3392, G3393, G3431, G3444,






G3445, G3446, G3447, G3448, G3449, G3450


1596
G226
PRT
A. thaliana
Paralogous to G1816, G225, G2718, G682, G3930; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


1597
G2297
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2062, G2063,






G2689


1598
G2297
PRT
A. thaliana
Paralogous to G2062, G2063, G2689


1599
G230
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G207, G227, G242;






orthologous to G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232, G4234, G4235, G4236, G4237, G4238


1600
G230
PRT
A. thaliana
Paralogous to G207, G227, G242; Orthologous to G4218, G4219,






G4220, G4221, G4222, G4223, G4224, G4225, G4226, G4227,






G4228, G4229, G4230, G4231, G4232, G4234, G4235, G4236,






G4237, G4238


1601
G231
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2007


1602
G231
PRT
A. thaliana
Paralogous to G2007


1603
G233
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G241; orthologous to






G4306, G4307, G4308, G4309, G4310


1604
G233
PRT
A. thaliana
Paralogous to G241; Orthologous to G4306, G4307, G4308, G4309,






G4310


1605
G234
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G232


1606
G234
PRT
A. thaliana
Paralogous to G232


1607
G2345
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1364, G481, G482,






G485; orthologous to G3394, G3395, G3396, G3397, G3398, G3429,






G3434, G3435, G3436, G3437, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3866, G3868, G3870, G3873,






G3874, G3875, G3876, G3938, G4272, G4276


1608
G2345
PRT
A. thaliana
Paralogous to G1364, G481, G482, G485; Orthologous to G3394,






G3395, G3396, G3397, G3398, G3429, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


1609
G2379
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2377


1610
G2379
PRT
A. thaliana
Paralogous to G2377


1611
G24
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G12, G1277, G1379;






orthologous to G3656


1612
G24
PRT
A. thaliana
Paralogous to G12, G1277, G1379; Orthologous to G3656


1613
G2436
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2443, G328


1614
G2436
PRT
A. thaliana
Paralogous to G2443, G328


1615
G2443
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2436, G328


1616
G2443
PRT
A. thaliana
Paralogous to G2436, G328


1617
G2456
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2454


1618
G2456
PRT
A. thaliana
Paralogous to G2454


1619
G2459
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2457


1620
G2459
PRT
A. thaliana
Paralogous to G2457


1621
G2467
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G812


1622
G2467
PRT
A. thaliana
Paralogous to G812


1623
G2469
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1293


1624
G2469
PRT
A. thaliana
Paralogous to G1293


1625
G2494
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1216


1626
G2494
PRT
A. thaliana
Paralogous to G1216


1627
G2512
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1752


1628
G2512
PRT
A. thaliana
Paralogous to G1752


1629
G2513
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G40, G2107, G41,






G42, G912; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1630
G2513
PRT
A. thaliana
Paralogous to G40, G2107, G41, G42, G912; Orthologous to G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1631
G2514
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G913, G976, G1753


1632
G2514
PRT
A. thaliana
Paralogous to G913, G976, G1753


1633
G2534
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1355,






G1453, G1766, G522, G761


1634
G2534
PRT
A. thaliana
Paralogous to G1354, G1355, G1453, G1766, G522, G761


1635
G2545
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G425, G426, G427


1636
G2545
PRT
A. thaliana
Paralogous to G425, G426, G427


1637
G2548
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G411


1638
G2548
PRT
A. thaliana
Paralogous to G411


1639
G256
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G666, G668, G932;






orthologous to G3384, G3385, G3386, G3500, G3501, G3502,






G3537, G3538, G3539, G3540, G3541


1640
G256
PRT
A. thaliana
Paralogous to G666, G668, G932; Orthologous to G3384, G3385,






G3386, G3500, G3501, G3502, G3537, G3538, G3539, G3540,






G3541


1641
G2572
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1838


1642
G2572
PRT
A. thaliana
Paralogous to G1838


1643
G2583
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1387, G975;






orthologous to G4294


1644
G2583
PRT
A. thaliana
Paralogous to G1387, G975; Orthologous to G4294


1645
G2587
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2586, G2686


1646
G2587
PRT
A. thaliana
Paralogous to G2586, G2686


1647
G2588
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1091


1648
G2588
PRT
A. thaliana
Paralogous to G1091


1649
G2629
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1053


1650
G2629
PRT
A. thaliana
Paralogous to G1053


1651
G2633
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1768, G2697,






G313, G852; orthologous to G3815, G3825


1652
G2633
PRT
A. thaliana
Paralogous to G1768, G2697, G313, G852; Orthologous to G3815,






G3825


1653
G2635
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2505


1654
G2635
PRT
A. thaliana
Paralogous to G2505


1655
G2642
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2639, G2640


1656
G2642
PRT
A. thaliana
Paralogous to G2639, G2640


1657
G2689
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2062, G2063,






G2297


1658
G2689
PRT
A. thaliana
Paralogous to G2062, G2063, G2297


1659
G2698
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2696


1660
G2698
PRT
A. thaliana
Paralogous to G2696


1661
G2701
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1638, G2452,






G1641, G1634


1662
G2701
PRT
A. thaliana
Paralogous to G1638, G2452, G1641, G1634


1663
G2709
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2717, G204


1664
G2709
PRT
A. thaliana
Paralogous to G2717, G204


1665
G2717
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G204, G2709


1666
G2717
PRT
A. thaliana
Paralogous to G204, G2709


1667
G2718
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1816, G225, G226,






G682, G3930; orthologous to G3392, G3393, G3431, G3444, G3445,






G3446, G3447, G3448, G3449, G3450


1668
G2718
PRT
A. thaliana
Paralogous to G1816, G225, G226, G682, G3930; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


1669
G2738
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3009, G307, G308,






G309; orthologous to G3816, G3817, G3818, G3819


1670
G2738
PRT
A. thaliana
Paralogous to G3009, G307, G308, G309; Orthologous to G3816,






G3817, G3818, G3819


1671
G2741
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1435; orthologous






to G4240, G4241, G4243, G4244, G4245


1672
G2741
PRT
A. thaliana
Paralogous to G1435; Orthologous to G4240, G4241, G4243, G4244,






G4245


1673
G2767
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1131


1674
G2767
PRT
A. thaliana
Paralogous to G1131


1675
G2781
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2159, G599


1676
G2781
PRT
A. thaliana
Paralogous to G2159, G599


1677
G2817
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2818


1678
G2817
PRT
A. thaliana
Paralogous to G2818


1679
G2827
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G352


1680
G2827
PRT
A. thaliana
Paralogous to G352


1681
G2834
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2840


1682
G2834
PRT
A. thaliana
Paralogous to G2840


1683
G2839
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1889, G1974,






G353, G354


1684
G2839
PRT
A. thaliana
Paralogous to G1889, G1974, G353, G354


1687
G2859
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2779


1688
G2859
PRT
A. thaliana
Paralogous to G2779


1689
G2866
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G468


1690
G2866
PRT
A. thaliana
Paralogous to G468


1691
G2869
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2870, G2871,






G2872, G2873, G934


1692
G2869
PRT
A. thaliana
Paralogous to G2870, G2871, G2872, G2873, G934


1693
G2870
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2869, G2871,






G2872, G2873, G934


1694
G2870
PRT
A. thaliana
Paralogous to G2869, G2871, G2872, G2873, G934


1695
G2871
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2869, G2870,






G2872, G2873, G934


1696
G2871
PRT
A. thaliana
Paralogous to G2869, G2870, G2872, G2873, G934


1697
G2872
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2869, G2870,






G2871, G2873, G934


1698
G2872
PRT
A. thaliana
Paralogous to G2869, G2870, G2871, G2873, G934


1699
G2873
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2869, G2870,






G2871, G2872, G934


1700
G2873
PRT
A. thaliana
Paralogous to G2869, G2870, G2871, G2872, G934


1701
G2888
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1991


1702
G2888
PRT
A. thaliana
Paralogous to G1991


1703
G289
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G290


1704
G289
PRT
A. thaliana
Paralogous to G290


1705
G2895
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2896


1706
G2895
PRT
A. thaliana
Paralogous to G2896


1707
G2903
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2902


1708
G2903
PRT
A. thaliana
Paralogous to G2902


1709
G291
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1211


1710
G291
PRT
A. thaliana
Paralogous to G1211


1711
G2981
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2982


1712
G2981
PRT
A. thaliana
Paralogous to G2982


1713
G2988
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1423, G1424


1714
G2988
PRT
A. thaliana
Paralogous to G1423, G1424


1715
G2994
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2993


1716
G2994
PRT
A. thaliana
Paralogous to G2993


1717
G3027
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1057


1718
G3027
PRT
A. thaliana
Paralogous to G1057


1719
G3065
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2965


1720
G3065
PRT
A. thaliana
Paralogous to G2965


1721
G307
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2738, G3009,






G308, G309; orthologous to G3816, G3817, G3818, G3819


1722
G307
PRT
A. thaliana
Paralogous to G2738, G3009, G308, G309; Orthologous to G3816,






G3817, G3818, G3819


1723
G3079
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3080


1724
G3079
PRT
A. thaliana
Paralogous to G3080


1725
G308
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2738, G3009,






G307, G309; orthologous to G3816, G3817, G3818, G3819


1726
G308
PRT
A. thaliana
Paralogous to G2738, G3009, G307, G309; Orthologous to G3816,






G3817, G3818, G3819


1727
G312
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2739


1728
G312
PRT
A. thaliana
Paralogous to G2739


1729
G313
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1768, G2633,






G2697, G852; orthologous to G3815, G3825


1730
G313
PRT
A. thaliana
Paralogous to G1768, G2633, G2697, G852; Orthologous to G3815,






G3825


1731
G314
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2699


1732
G314
PRT
A. thaliana
Paralogous to G2699


1733
G3362
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3364, G3365,






G3366, G3367, G3368, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1734
G3362
PRT
M. truncatula
Paralogous to G3364, G3365, G3366, G3367, G3368, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1735
G3364
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3365,






G3366, G3367, G3368, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1736
G3364
PRT
M. truncatula
Paralogous to G3362, G3365, G3366, G3367, G3368, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1737
G3365
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3364,






G3366, G3367, G3368, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1738
G3365
PRT
M. truncatula
Paralogous to G3362, G3364, G3366, G3367, G3368, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1739
G3366
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3364,






G3365, G3367, G3368, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1740
G3366
PRT
M. truncatula
Paralogous to G3362, G3364, G3365, G3367, G3368, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1741
G3367
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3364,






G3365, G3366, G3368, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1742
G3367
PRT
M. truncatula
Paralogous to G3362, G3364, G3365, G3366, G3368, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1743
G3368
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3364,






G3365, G3366, G3367, G3369; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1744
G3368
PRT
M. truncatula
Paralogous to G3362, G3364, G3365, G3366, G3367, G3369;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1745
G3369
DNA
M. truncatula
Predicted polypeptide sequence is paralogous to G3362, G3364,






G3365, G3366, G3367, G3368; orthologous to G40, G2107, G2513,






G41, G42, G912, G3370, G3371, G3372, G3373, G3374, G3375,






G3376, G3377, G3378, G3379, G3438, G3439, G3440, G3441,






G3442, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1746
G3369
PRT
M. truncatula
Paralogous to G3362, G3364, G3365, G3366, G3367, G3368;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3438, G3439, G3440, G3441, G3442, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


1747
G3370
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3371, G3374,






G3376, G3378; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3372,






G3373, G3375, G3377, G3379, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1748
G3370
PRT
O. sativa
Paralogous to G3371, G3374, G3376, G3378; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3372, G3373, G3375, G3377, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1749
G3371
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3370, G3374,






G3376, G3378; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3372,






G3373, G3375, G3377, G3379, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1750
G3371
PRT
O. sativa
Paralogous to G3370, G3374, G3376, G3378; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3372, G3373, G3375, G3377, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1751
G3372
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3373, G3375,






G3377, G3379; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3374, G3376, G3378, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1752
G3372
PRT
O. sativa
Paralogous to G3373, G3375, G3377, G3379; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3370, G3371, G3374, G3376, G3378, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1753
G3373
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3372, G3375,






G3377, G3379; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3374, G3376, G3378, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1754
G3373
PRT
O. sativa
Paralogous to G3372, G3375, G3377, G3379; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3370, G3371, G3374, G3376, G3378, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1755
G3374
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3370, G3371,






G3376, G3378; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3372,






G3373, G3375, G3377, G3379, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1756
G3374
PRT
O. sativa
Paralogous to G3370, G3371, G3376, G3378; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3372, G3373, G3375, G3377, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1757
G3375
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3372, G3373,






G3377, G3379; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3374, G3376, G3378, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1758
G3375
PRT
O. sativa
Paralogous to G3372, G3373, G3377, G3379; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3370, G3371, G3374, G3376, G3378, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1759
G3376
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3370, G3371,






G3374, G3378; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3372,






G3373, G3375, G3377, G3379, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1760
G3376
PRT
O. sativa
Paralogous to G3370, G3371, G3374, G3378; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3372, G3373, G3375, G3377, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1761
G3377
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3372, G3373,






G3375, G3379; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3374, G3376, G3378, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1762
G3377
PRT
O. sativa
Paralogous to G3372, G3373, G3375, G3379; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3370, G3371, G3374, G3376, G3378, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1763
G3378
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3370, G3371,






G3374, G3376; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3372,






G3373, G3375, G3377, G3379, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1764
G3378
PRT
O. sativa
Paralogous to G3370, G3371, G3374, G3376; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3372, G3373, G3375, G3377, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1765
G3379
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3372, G3373,






G3375, G3377; orthologous to G40, G2107, G2513, G41, G42,






G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3374, G3376, G3378, G3438, G3439, G3440, G3441,






G3442, G3369, G3497, G3498, G3499, G3443, G3463, G3464,






G3465, G3466, G3467, G3468, G3469


1766
G3379
PRT
O. sativa
Paralogous to G3372, G3373, G3375, G3377; Orthologous to G40,






G2107, G2513, G41, G42, G912, G3362, G3364, G3365, G3366,






G3367, G3368, G3370, G3371, G3374, G3376, G3378, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1767
G3380
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3381, G3383,






G3515, G3737; orthologous to G1791, G1792, G1795, G30, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3794, G3739,






G3929, G4328, G4329, G4330


1768
G3380
PRT
O. sativa
Paralogous to G3381, G3383, G3515, G3737; Orthologous to G1791,






G1792, G1795, G30, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3794, G3739, G3929, G4328, G4329, G4330


1769
G3381
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3380, G3383,






G3515, G3737; orthologous to G1791, G1792, G1795, G30, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3794, G3739,






G3929, G4328, G4329, G4330


1770
G3381
PRT
O. sativa
Paralogous to G3380, G3383, G3515, G3737; Orthologous to G1791,






G1792, G1795, G30, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3794, G3739, G3929, G4328, G4329, G4330


1771
G3383
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3380, G3381,






G3515, G3737; orthologous to G1791, G1792, G1795, G30, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3794, G3739,






G3929, G4328, G4329, G4330


1772
G3383
PRT
O. sativa
Paralogous to G3380, G3381, G3515, G3737; Orthologous to G1791,






G1792, G1795, G30, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3794, G3739, G3929, G4328, G4329, G4330


1773
G3384
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3385, G3386,






G3502; orthologous to G256, G666, G668, G932, G3500, G3501,






G3537, G3538, G3539, G3540, G3541


1774
G3384
PRT
O. sativa
Paralogous to G3385, G3386, G3502; Orthologous to G256, G666,






G668, G932, G3500, G3501, G3537, G3538, G3539, G3540, G3541


1775
G3385
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3384, G3386,






G3502; orthologous to G256, G666, G668, G932, G3500, G3501,






G3537, G3538, G3539, G3540, G3541


1776
G3385
PRT
O. sativa
Paralogous to G3384, G3386, G3502; Orthologous to G256, G666,






G668, G932, G3500, G3501, G3537, G3538, G3539, G3540, G3541


1777
G3386
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3384, G3385,






G3502; orthologous to G256, G666, G668, G932, G3500, G3501,






G3537, G3538, G3539, G3540, G3541


1778
G3386
PRT
O. sativa
Paralogous to G3384, G3385, G3502; Orthologous to G256, G666,






G668, G932, G3500, G3501, G3537, G3538, G3539, G3540, G3541


1779
G3388
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3389, G3390,






G3391; orthologous to G1930, G867, G9, G993, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1780
G3388
PRT
O. sativa
Paralogous to G3389, G3390, G3391; Orthologous to G1930, G867,






G9, G993, G3432, G3433, G3451, G3452, G3453, G3454, G3455


1781
G3389
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3388, G3390,






G3391; orthologous to G1930, G867, G9, G993, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1782
G3389
PRT
O. sativa
Paralogous to G3388, G3390, G3391; Orthologous to G1930, G867,






G9, G993, G3432, G3433, G3451, G3452, G3453, G3454, G3455


1783
G3390
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3388, G3389,






G3391; orthologous to G1930, G867, G9, G993, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1784
G3390
PRT
O. sativa
Paralogous to G3388, G3389, G3391; Orthologous to G1930, G867,






G9, G993, G3432, G3433, G3451, G3452, G3453, G3454, G3455


1785
G3391
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3388, G3389,






G3390; orthologous to G1930, G867, G9, G993, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


1786
G3391
PRT
O. sativa
Paralogous to G3388, G3389, G3390; Orthologous to G1930, G867,






G9, G993, G3432, G3433, G3451, G3452, G3453, G3454, G3455


1787
G3392
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3393; orthologous






to G1816, G225, G226, G2718, G682, G3431, G3444, G3445,






G3446, G3447, G3448, G3449, G3450, G3930


1788
G3392
PRT
O. sativa
Paralogous to G3393; Orthologous to G1816, G225, G226, G2718,






G682, G3431, G3444, G3445, G3446, G3447, G3448, G3449,






G3450, G3930


1789
G3393
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3392; orthologous






to G1816, G225, G226, G2718, G682, G3431, G3444, G3445,






G3446, G3447, G3448, G3449, G3450, G3930


1790
G3393
PRT
O. sativa
Paralogous to G3392; Orthologous to G1816, G225, G226, G2718,






G682, G3431, G3444, G3445, G3446, G3447, G3448, G3449,






G3450, G3930


1791
G3394
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1364, G2345,






G481, G482, G485, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3470, G3471, G3472, G3473, G3474,






G3475, G3476, G3478, G3866, G3868, G3870, G3873, G3874,






G3875, G3876, G3938, G4272, G4276


1792
G3394
PRT
O. sativa
Orthologous to G1364, G2345, G481, G482, G485, G3395, G3396,






G3397, G3398, G3429, G3434, G3435, G3436, G3437, G3470,






G3471, G3472, G3473, G3474, G3475, G3476, G3478, G3866,






G3868, G3870, G3873, G3874, G3875, G3876, G3938, G4272,






G4276


1793
G3395
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3396, G3397,






G3398, G3429, G3938; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


1794
G3395
PRT
O. sativa
Paralogous to G3396, G3397, G3398, G3429, G3938; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


1795
G3396
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3395, G3397,






G3398, G3429, G3938; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


1796
G3396
PRT
O. sativa
Paralogous to G3395, G3397, G3398, G3429, G3938; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


1797
G3397
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3395, G3396,






G3398, G3429, G3938; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


1798
G3397
PRT
O. sativa
Paralogous to G3395, G3396, G3398, G3429, G3938; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


1799
G3398
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3395, G3396,






G3397, G3429, G3938; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


1800
G3398
PRT
O. sativa
Paralogous to G3395, G3396, G3397, G3429, G3938; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


1801
G3399
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3400; orthologous






to G1067, G1073, G2156


1802
G3399
PRT
O. sativa
Paralogous to G3400; Orthologous to G1067, G1073, G2156


1803
G3400
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3399; orthologous






to G1067, G1073, G2156


1804
G3400
PRT
O. sativa
Paralogous to G3399; Orthologous to G1067, G1073, G2156


1805
G3406
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3407; orthologous






to G1075, G1076, G3458, G3459, G3460, G3461


1806
G3406
PRT
O. sativa
Paralogous to G3407; Orthologous to G1075, G1076, G3458, G3459,






G3460, G3461


1807
G3407
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3406; orthologous






to G1075, G1076, G3458, G3459, G3460, G3461


1808
G3407
PRT
O. sativa
Paralogous to G3406; Orthologous to G1075, G1076, G3458, G3459,






G3460, G3461


1809
G3429
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3395, G3396,






G3397, G3398, G3938; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


1810
G3429
PRT
O. sativa
Paralogous to G3395, G3396, G3397, G3398, G3938; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


1811
G3430
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3848, G5171;






orthologous to G22, G1006, G28, G3659, G3660, G3661, G3717,






G3718, G3841, G3843, G3844, G3845, G3846, G3852, G3856,






G3857, G3858, G3864, G3865, G4626


1812
G3430
PRT
O. sativa
Paralogous to G3848, G5171; Orthologous to G22, G1006, G28,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3852, G3856, G3857, G3858, G3864, G3865,






G4626


1813
G3431
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3444; orthologous






to G1816, G225, G226, G2718, G682, G3392, G3393, G3445,






G3446, G3447, G3448, G3449, G3450, G3930


1814
G3431
PRT
Z. mays
Paralogous to G3444; Orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3445, G3446, G3447, G3448, G3449,






G3450, G3930


1815
G3432
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3433; orthologous






to G1930, G867, G9, G993, G3388, G3389, G3390, G3391, G3451,






G3452, G3453, G3454, G3455


1816
G3432
PRT
Z. mays
Paralogous to G3433; Orthologous to G1930, G867, G9, G993,






G3388, G3389, G3390, G3391, G3451, G3452, G3453, G3454,






G3455


1817
G3433
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3432; orthologous






to G1930, G867, G9, G993, G3388, G3389, G3390, G3391, G3451,






G3452, G3453, G3454, G3455


1818
G3433
PRT
Z. mays
Paralogous to G3432; Orthologous to G1930, G867, G9, G993,






G3388, G3389, G3390, G3391, G3451, G3452, G3453, G3454,






G3455


1819
G3434
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3435, G3436,






G3437, G3866, G3876, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


1820
G3434
PRT
Z. mays
Paralogous to G3435, G3436, G3437, G3866, G3876, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


1821
G3435
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3436,






G3437, G3866, G3876, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


1822
G3435
PRT
Z. mays
Paralogous to G3434, G3436, G3437, G3866, G3876, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


1823
G3436
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3437, G3866, G3876, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


1824
G3436
PRT
Z. mays
Paralogous to G3434, G3435, G3437, G3866, G3876, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


1825
G3437
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3436, G3866, G3876, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


1826
G3437
PRT
Z. mays
Paralogous to G3434, G3435, G3436, G3866, G3876, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


1827
G3438
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3439, G3440,






G3441, G3442, G3443; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1828
G3438
PRT
Z. mays
Paralogous to G3439, G3440, G3441, G3442, G3443; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1829
G3439
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3438, G3440,






G3441, G3442, G3443; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1830
G3439
PRT
Z. mays
Paralogous to G3438, G3440, G3441, G3442, G3443; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1831
G3440
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3438, G3439,






G3441, G3442, G3443; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1832
G3440
PRT
Z. mays
Paralogous to G3438, G3439, G3441, G3442, G3443; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1833
G3441
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3438, G3439,






G3440, G3442, G3443; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1834
G3441
PRT
Z. mays
Paralogous to G3438, G3439, G3440, G3442, G3443; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1835
G3442
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3438, G3439,






G3440, G3441, G3443; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1836
G3442
PRT
Z. mays
Paralogous to G3438, G3439, G3440, G3441, G3443; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1837
G3443
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3438, G3439,






G3440, G3441, G3442; orthologous to G40, G2107, G2513, G41,






G42, G912, G3362, G3364, G3365, G3366, G3367, G3368, G3370,






G3371, G3372, G3373, G3374, G3375, G3376, G3377, G3378,






G3379, G3369, G3497, G3498, G3499, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1838
G3443
PRT
Z. mays
Paralogous to G3438, G3439, G3440, G3441, G3442; Orthologous to






G40, G2107, G2513, G41, G42, G912, G3362, G3364, G3365,






G3366, G3367, G3368, G3370, G3371, G3372, G3373, G3374,






G3375, G3376, G3377, G3378, G3379, G3369, G3497, G3498,






G3499, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1839
G3444
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3431; orthologous






to G1816, G225, G226, G2718, G682, G3392, G3393, G3445,






G3446, G3447, G3448, G3449, G3450, G3930


1840
G3444
PRT
Z. mays
Paralogous to G3431; Orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3445, G3446, G3447, G3448, G3449,






G3450, G3930


1841
G3445
DNA
G. max
Predicted polypeptide sequence is paralogous to G3446, G3447,






G3448, G3449, G3450; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1842
G3445
PRT
G. max
Paralogous to G3446, G3447, G3448, G3449, G3450; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1843
G3446
DNA
G. max
Predicted polypeptide sequence is paralogous to G3445, G3447,






G3448, G3449, G3450; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1844
G3446
PRT
G. max
Paralogous to G3445, G3447, G3448, G3449, G3450; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1845
G3447
DNA
G. max
Predicted polypeptide sequence is paralogous to G3445, G3446,






G3448, G3449, G3450; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1846
G3447
PRT
G. max
Paralogous to G3445, G3446, G3448, G3449, G3450; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1847
G3448
DNA
G. max
Predicted polypeptide sequence is paralogous to G3445, G3446,






G3447, G3449, G3450; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1848
G3448
PRT
G. max
Paralogous to G3445, G3446, G3447, G3449, G3450; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1849
G3449
DNA
G. max
Predicted polypeptide sequence is paralogous to G3445, G3446,






G3447, G3448, G3450; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1850
G3449
PRT
G. max
Paralogous to G3445, G3446, G3447, G3448, G3450; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1851
G3450
DNA
G. max
Predicted polypeptide sequence is paralogous to G3445, G3446,






G3447, G3448, G3449; orthologous to G1816, G225, G226, G2718,






G682, G3392, G3393, G3431, G3444, G3930


1852
G3450
PRT
G. max
Paralogous to G3445, G3446, G3447, G3448, G3449; Orthologous to






G1816, G225, G226, G2718, G682, G3392, G3393, G3431, G3444,






G3930


1853
G3451
DNA
G. max
Predicted polypeptide sequence is paralogous to G3452, G3453,






G3454, G3455; orthologous to G1930, G867, G9, G993, G3388,






G3389, G3390, G3391, G3432, G3433


1854
G3451
PRT
G. max
Paralogous to G3452, G3453, G3454, G3455; Orthologous to G1930,






G867, G9, G993, G3388, G3389, G3390, G3391, G3432, G3433


1855
G3452
DNA
G. max
Predicted polypeptide sequence is paralogous to G3451, G3453,






G3454, G3455; orthologous to G1930, G867, G9, G993, G3388,






G3389, G3390, G3391, G3432, G3433


1856
G3452
PRT
G. max
Paralogous to G3451, G3453, G3454, G3455; Orthologous to G1930,






G867, G9, G993, G3388, G3389, G3390, G3391, G3432, G3433


1857
G3453
DNA
G. max
Predicted polypeptide sequence is paralogous to G3451, G3452,






G3454, G3455; orthologous to G1930, G867, G9, G993, G3388,






G3389, G3390, G3391, G3432, G3433


1858
G3453
PRT
G. max
Paralogous to G3451, G3452, G3454, G3455; Orthologous to G1930,






G867, G9, G993, G3388, G3389, G3390, G3391, G3432, G3433


1859
G3454
DNA
G. max
Predicted polypeptide sequence is paralogous to G3451, G3452,






G3453, G3455; orthologous to G1930, G867, G9, G993, G3388,






G3389, G3390, G3391, G3432, G3433


1860
G3454
PRT
G. max
Paralogous to G3451, G3452, G3453, G3455; Orthologous to G1930,






G867, G9, G993, G3388, G3389, G3390, G3391, G3432, G3433


1861
G3455
DNA
G. max
Predicted polypeptide sequence is paralogous to G3451, G3452,






G3453, G3454; orthologous to G1930, G867, G9, G993, G3388,






G3389, G3390, G3391, G3432, G3433


1862
G3455
PRT
G. max
Paralogous to G3451, G3452, G3453, G3454; Orthologous to G1930,






G867, G9, G993, G3388, G3389, G3390, G3391, G3432, G3433


1863
G3457
DNA
G. max
Predicted polypeptide sequence is orthologous to G2789, G596


1864
G3457
PRT
G. max
Orthologous to G2789, G596


1865
G3458
DNA
G. max
Predicted polypeptide sequence is paralogous to G3459, G3460,






G3461; orthologous to G1075, G1076, G3406, G3407


1866
G3458
PRT
G. max
Paralogous to G3459, G3460, G3461; Orthologous to G1075, G1076,






G3406, G3407


1867
G3459
DNA
G. max
Predicted polypeptide sequence is paralogous to G3458, G3460,






G3461; orthologous to G1075, G1076, G3406, G3407


1868
G3459
PRT
G. max
Paralogous to G3458, G3460, G3461; Orthologous to G1075, G1076,






G3406, G3407


1869
G3460
DNA
G. max
Predicted polypeptide sequence is paralogous to G3458, G3459,






G3461; orthologous to G1075, G1076, G3406, G3407


1870
G3460
PRT
G. max
Paralogous to G3458, G3459, G3461; Orthologous to G1075, G1076,






G3406, G3407


1871
G3461
DNA
G. max
Predicted polypeptide sequence is paralogous to G3458, G3459,






G3460; orthologous to G1075, G1076, G3406, G3407


1872
G3461
PRT
G. max
Paralogous to G3458, G3459, G3460; Orthologous to G1075, G1076,






G3406, G3407


1873
G3463
DNA
G. max
Predicted polypeptide sequence is paralogous to G3464, G3465,






G3466, G3467, G3468, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1874
G3463
PRT
G. max
Paralogous to G3464, G3465, G3466, G3467, G3468, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1875
G3464
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3465,






G3466, G3467, G3468, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1876
G3464
PRT
G. max
Paralogous to G3463, G3465, G3466, G3467, G3468, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1877
G3465
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3464,






G3466, G3467, G3468, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1878
G3465
PRT
G. max
Paralogous to G3463, G3464, G3466, G3467, G3468, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1879
G3466
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3464,






G3465, G3467, G3468, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1880
G3466
PRT
G. max
Paralogous to G3463, G3464, G3465, G3467, G3468, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1881
G3467
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3464,






G3465, G3466, G3468, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1882
G3467
PRT
G. max
Paralogous to G3463, G3464, G3465, G3466, G3468, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1883
G3468
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3464,






G3465, G3466, G3467, G3469; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1884
G3468
PRT
G. max
Paralogous to G3463, G3464, G3465, G3466, G3467, G3469;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1885
G3469
DNA
G. max
Predicted polypeptide sequence is paralogous to G3463, G3464,






G3465, G3466, G3467, G3468; orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3497, G3498, G3499, G3443


1886
G3469
PRT
G. max
Paralogous to G3463, G3464, G3465, G3466, G3467, G3468;






Orthologous to G40, G2107, G2513, G41, G42, G912, G3362,






G3364, G3365, G3366, G3367, G3368, G3370, G3371, G3372,






G3373, G3374, G3375, G3376, G3377, G3378, G3379, G3438,






G3439, G3440, G3441, G3442, G3369, G3497, G3498, G3499,






G3443


1887
G3470
DNA
G. max
Predicted polypeptide sequence is paralogous to G3471, G3472,






G3473, G3474, G3475, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1888
G3470
PRT
G. max
Paralogous to G3471, G3472, G3473, G3474, G3475, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1889
G3471
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3472,






G3473, G3474, G3475, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1890
G3471
PRT
G. max
Paralogous to G3470, G3472, G3473, G3474, G3475, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1891
G3472
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3473, G3474, G3475, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1892
G3472
PRT
G. max
Paralogous to G3470, G3471, G3473, G3474, G3475, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1893
G3473
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3474, G3475, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1894
G3473
PRT
G. max
Paralogous to G3470, G3471, G3472, G3474, G3475, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1895
G3474
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3475, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1896
G3474
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3475, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1897
G3475
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3476, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1898
G3475
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3476, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1899
G3476
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3475, G3478, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1900
G3476
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3475, G3478,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1901
G3478
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3873, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


1902
G3478
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3873, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


1903
G3479
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3480, G3481,






G3482, G3483; orthologous to G152, G153, G1760, G860, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1904
G3479
PRT
O. sativa
Paralogous to G3480, G3481, G3482, G3483; Orthologous to G152,






G153, G1760, G860, G3484, G3485, G3487, G3488, G3489, G3980,






G3981, G3982


1905
G3480
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3479, G3481,






G3482, G3483; orthologous to G152, G153, G1760, G860, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1906
G3480
PRT
O. sativa
Paralogous to G3479, G3481, G3482, G3483; Orthologous to G152,






G153, G1760, G860, G3484, G3485, G3487, G3488, G3489, G3980,






G3981, G3982


1907
G3481
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3479, G3480,






G3482, G3483; orthologous to G152, G153, G1760, G860, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1908
G3481
PRT
O. sativa
Paralogous to G3479, G3480, G3482, G3483; Orthologous to G152,






G153, G1760, G860, G3484, G3485, G3487, G3488, G3489, G3980,






G3981, G3982


1909
G3482
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3479, G3480,






G3481, G3483; orthologous to G152, G153, G1760, G860, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1910
G3482
PRT
O. sativa
Paralogous to G3479, G3480, G3481, G3483; Orthologous to G152,






G153, G1760, G860, G3484, G3485, G3487, G3488, G3489, G3980,






G3981, G3982


1911
G3483
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3479, G3480,






G3481, G3482; orthologous to G152, G153, G1760, G860, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


1912
G3483
PRT
O. sativa
Paralogous to G3479, G3480, G3481, G3482; Orthologous to G152,






G153, G1760, G860, G3484, G3485, G3487, G3488, G3489, G3980,






G3981, G3982


1913
G3484
DNA
G. max
Predicted polypeptide sequence is paralogous to G3485, G3980,






G3981; orthologous to G152, G153, G1760, G860, G3479, G3480,






G3481, G3482, G3483, G3487, G3488, G3489, G3982


1914
G3484
PRT
G. max
Paralogous to G3485, G3980, G3981; Orthologous to G152, G153,






G1760, G860, G3479, G3480, G3481, G3482, G3483, G3487,






G3488, G3489, G3982


1915
G3485
DNA
G. max
Predicted polypeptide sequence is paralogous to G3484, G3980,






G3981; orthologous to G152, G153, G1760, G860, G3479, G3480,






G3481, G3482, G3483, G3487, G3488, G3489, G3982


1916
G3485
PRT
G. max
Paralogous to G3484, G3980, G3981; Orthologous to G152, G153,






G1760, G860, G3479, G3480, G3481, G3482, G3483, G3487,






G3488, G3489, G3982


1917
G3487
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3488, G3489;






orthologous to G152, G153, G1760, G860, G3479, G3480, G3481,






G3482, G3483, G3484, G3485, G3980, G3981, G3982


1918
G3487
PRT
Z. mays
Paralogous to G3488, G3489; Orthologous to G152, G153, G1760,






G860, G3479, G3480, G3481, G3482, G3483, G3484, G3485,






G3980, G3981, G3982


1919
G3488
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3487, G3489;






orthologous to G152, G153, G1760, G860, G3479, G3480, G3481,






G3482, G3483, G3484, G3485, G3980, G3981, G3982


1920
G3488
PRT
Z. mays
Paralogous to G3487, G3489; Orthologous to G152, G153, G1760,






G860, G3479, G3480, G3481, G3482, G3483, G3484, G3485,






G3980, G3981, G3982


1921
G3489
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3487, G3488;






orthologous to G152, G153, G1760, G860, G3479, G3480, G3481,






G3482, G3483, G3484, G3485, G3980, G3981, G3982


1922
G3489
PRT
Z. mays
Paralogous to G3487, G3488; Orthologous to G152, G153, G1760,






G860, G3479, G3480, G3481, G3482, G3483, G3484, G3485,






G3980, G3981, G3982


1923
G3490
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4369, G4370;






orthologous to G1543, G3510, G3524, G4371


1924
G3490
PRT
Z. mays
Paralogous to G4369, G4370; Orthologous to G1543, G3510, G3524,






G4371


1925
G3491
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G807, G810,






G3494, G3495, G3512


1926
G3491
PRT
O. sativa
Orthologous to G807, G810, G3494, G3495, G3512


1927
G3494
DNA
G. max
Predicted polypeptide sequence is paralogous to G3495, G3512;






orthologous to G807, G810, G3491


1928
G3494
PRT
G. max
Paralogous to G3495, G3512; Orthologous to G807, G810, G3491


1929
G3495
DNA
G. max
Predicted polypeptide sequence is paralogous to G3494, G3512;






orthologous to G807, G810, G3491


1930
G3495
PRT
G. max
Paralogous to G3494, G3512; Orthologous to G807, G810, G3491


1931
G3497
DNA
M. sativa
Predicted polypeptide sequence is paralogous to G3498, G3499;






orthologous to G40, G2107, G2513, G41, G42, G912, G3362, G3364,






G3365, G3366, G3367, G3368, G3370, G3371, G3372, G3373,






G3374, G3375, G3376, G3377, G3378, G3379, G3438, G3439,






G3440, G3441, G3442, G3369, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1932
G3497
PRT
M. sativa
Paralogous to G3498, G3499; Orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1933
G3498
DNA
M. sativa
Predicted polypeptide sequence is paralogous to G3497, G3499;






orthologous to G40, G2107, G2513, G41, G42, G912, G3362, G3364,






G3365, G3366, G3367, G3368, G3370, G3371, G3372, G3373,






G3374, G3375, G3376, G3377, G3378, G3379, G3438, G3439,






G3440, G3441, G3442, G3369, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1934
G3498
PRT
M. sativa
Paralogous to G3497, G3499; Orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1935
G3499
DNA
M. sativa
Predicted polypeptide sequence is paralogous to G3497, G3498;






orthologous to G40, G2107, G2513, G41, G42, G912, G3362, G3364,






G3365, G3366, G3367, G3368, G3370, G3371, G3372, G3373,






G3374, G3375, G3376, G3377, G3378, G3379, G3438, G3439,






G3440, G3441, G3442, G3369, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


1936
G3499
PRT
M. sativa
Paralogous to G3497, G3498; Orthologous to G40, G2107, G2513,






G41, G42, G912, G3362, G3364, G3365, G3366, G3367, G3368,






G3370, G3371, G3372, G3373, G3374, G3375, G3376, G3377,






G3378, G3379, G3438, G3439, G3440, G3441, G3442, G3369,






G3443, G3463, G3464, G3465, G3466, G3467, G3468, G3469


1937
G3500
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3501; orthologous






to G256, G666, G668, G932, G3384, G3385, G3386, G3502, G3537,






G3538, G3539, G3540, G3541


1938
G3500
PRT
S. lycopersicum
Paralogous to G3501; Orthologous to G256, G666, G668, G932,






G3384, G3385, G3386, G3502, G3537, G3538, G3539, G3540,






G3541


1939
G3501
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3500; orthologous






to G256, G666, G668, G932, G3384, G3385, G3386, G3502, G3537,






G3538, G3539, G3540, G3541


1940
G3501
PRT
S. lycopersicum
Paralogous to G3500; Orthologous to G256, G666, G668, G932,






G3384, G3385, G3386, G3502, G3537, G3538, G3539, G3540,






G3541


1941
G3502
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3384, G3385,






G3386; orthologous to G256, G666, G668, G932, G3500, G3501,






G3537, G3538, G3539, G3540, G3541


1942
G3502
PRT
O. sativa
Paralogous to G3384, G3385, G3386; Orthologous to G256, G666,






G668, G932, G3500, G3501, G3537, G3538, G3539, G3540, G3541


1943
G3503
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3504, G3505,






G3506, G3507, G3508; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1944
G3503
PRT
O. sativa
Paralogous to G3504, G3505, G3506, G3507, G3508; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534,






G3527, G3528, G4637, G4638, G4639, G4640


1945
G3504
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3503, G3505,






G3506, G3507, G3508; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1946
G3504
PRT
O. sativa
Paralogous to G3503, G3505, G3506, G3507, G3508; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534,






G3527, G3528, G4637, G4638, G4639, G4640


1947
G3505
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3503, G3504,






G3506, G3507, G3508; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1948
G3505
PRT
O. sativa
Paralogous to G3503, G3504, G3506, G3507, G3508; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534,






G3527, G3528, G4637, G4638, G4639, G4640


1949
G3506
DNA
O. saliva
Predicted polypeptide sequence is paralogous to G3503, G3504,






G3505, G3507, G3508; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1950
G3506
PRT
O. salita
Paralogous to G3503, G3504, G3505, G3507, G3508; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534,






G3527, G3528, G4637, G4638, G4639, G4640


1951
G3507
DNA
O. saliva
Predicted polypeptide sequence is paralogous to G3503, G3504,






G3505, G3506, G3508; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1952
G3507
PRT
O. saliva
Paralogous to G3503, G3504, G3505, G3506, G3508; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534, 






G3527, G3528, G4637, G4638, G4639, G4640


1953
G3508
DNA
O. saliva
Predicted polypeptide sequence is paralogous to G3503, G3504,






G3505, G3506. G3507; orthologous to G197, G255, G664, G3509,






G3529, G3531, G3532, G3533, G3534, G3527, G3528, G4637,






G4638, G4639, G4640


1954
G3508
PRT
O. saliva
Paralogous to G3503, G3504, G3505, G3506, G3507; Orthologous to






G197, G255, G664, G3509, G3529, G3531, G3532, G3533, G3534,






G3527, G3528, G4637, G4638, G4639, G4640


1955
G3509
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3529, G3531,






G3532, G3533, G3534, G3527, G3528, G4637, G4638, G4639,






G4640


1956
G3509
PRT
S. lycopersicum
Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3529, G3531, G3532, G3533, G3534, G3527,






G3528, G4637, G4638, G4639, G4640


1957
G35I0
DNA
O. saliva
Predicted polypeptide sequence is orthologous to G1543, G3490,






G3524, G4369, G4370, G4371


1958
G3510
PRT
O saliva
Orthologous to G1543, G3490, G3524, G4369, G4370, G4371


1959
G3512
DNA
G. max
Predicted polypeptide sequence is paralogous to G3494, G3495;






orthologous to G807, G810, G3491


1960
G3512
PRT
Z. mays
Paralogous to G3494, G3495; Orthologous to G807, G810, G3491


1961
G3515
DNA
O. saliva
Predicted polypeptide sequence is paralogous to G3380, G3381,






G3383, G3737; orthologous to G1791, G1792, G1795, G30, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3794, G3739,






G3929, G4328, G4329, G4330


1962
G3515
PRT
O. saliva
Paralogous to G3380, G3381, G3383, G3737; Orthologous to G1791,






G1792, G1795, G30, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3794, G3739, G3929, G4328, G4329, G4330


1963
G3516
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3517, G3794,






G3739, G3929; orthologous to G1791, G1792, G1795, G30, G3380,






G3381, G3383, G3515, G3518, G3519, G3520, G3735, G3736,






G3737, G4328, G4329, G4330


1964
G3516
PRT
Z. mays
Paralogous to G3517, G3794, G3739, G3929; Orthologous to G1791,






G1792, G1795, G30, G3380, G3381, G3383, G3515, G3518, G3519,






G3520, G3735, G3736, G3737, G4328, G4329, G4330


1965
G3517
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3516, G3794,






G3739, G3929; orthologous to G1791, G1792, G1795, G30, G3380,






G3381, G3383, G3515, G3518, G3519, G3520, G3735, G3736,






G3737, G4328, G4329, G4330


1966
G3517
PRT
Z. mays
Paralogous to G3516, G3794, G3739, G3929; Orthologous to G1791,






G1792, G1795, G30, G3380, G3381, G3383, G3515, G3518, G3519,






G3520, G3735, G3736, G3737, G4328, G4329, G4330


1967
G3518
DNA
G. max
Predicted polypeptide sequence is paralogous to G3519, G3520;






orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1968
G3518
PRT
G. max
Paralogous to G3519, G3520; Orthologous to G1791, G1792, G1795,






G30, G3380, G3381, G3383, G3515, G3516, G3517, G3735, G3736,






G3737, G3794, G3739, G3929, G4328, G4329, G4330


1969
G3519
DNA
G. max
Predicted polypeptide sequence is paralogous to G3518, G3520;






orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1970
G3519
PRT
G. max
Paralogous to G3518, G3520; Orthologous to G1791, G1792, G1795,






G30, G3380, G3381, G3383, G3515, G3516, G3517, G3735, G3736,






G3737, G3794, G3739, G3929, G4328, G4329, G4330


1971
G3520
DNA
G. max
Predicted polypeptide sequence is paralogous to G3518, G3519;






orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3735, G3736, G3737, G3794, G3739,






G3929, G4328, G4329, G4330


1972
G3520
PRT
G. max
Paralogous to G3518, G3519; Orthologous to G1791, G1792, G1795,






G30, G3380, G3381, G3383, G3515, G3516, G3517, G3735, G3736,






G3737, G3794, G3739, G3929, G4328, G4329, G4330


1973
G3524
DNA
G. max
Predicted polypeptide sequence is paralogous to G4371; orthologous






to G1543, G3510, G3490, G4369, G4370


1974
G3524
PRT
G. max
Paralogous to G4371; Orthologous to G1543, G3510, G3490, G4369,






G4370


1975
G3527
DNA
G. max
Predicted polypeptide sequence is paralogous to G3529, G3528,






G4639; orthologous to G197, G255, G664, G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3531, G3532, G3533, G3534,






G4637, G4638, G4640


1976
G3527
PRT
G. max
Paralogous to G3529, G3528, G4639; Orthologous to G197, G255,






G664, G3503, G3504, G3505, G3506, G3507, G3508, G3509,






G3531, G3532, G3533, G3534, G4637, G4638, G4640


1977
G3528
DNA
G. max
Predicted polypeptide sequence is paralogous to G3529, G3527,






G4639; orthologous to G197, G255, G664, G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3531, G3532, G3533, G3534,






G4637, G4638, G4640


1978
G3528
PRT
G. max
Paralogous to G3529, G3527, G4639; Orthologous to G197, G255,






G664, G3503, G3504, G3505, G3506, G3507, G3508, G3509,






G3531, G3532, G3533, G3534, G4637, G4638, G4640


1979
G3529
DNA
G. max
Predicted polypeptide sequence is paralogous to G3527, G3528,






G4639; orthologous to G197, G255, G664, G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3531, G3532, G3533, G3534,






G4637, G4638, G4640


1980
G3529
PRT
G. max
Paralogous to G3527, G3528, G4639; Orthologous to G197, G255,






G664, G3503, G3504, G3505, G3506, G3507, G3508, G3509,






G3531, G3532, G3533, G3534, G4637, G4638, G4640


1981
G353
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1889, G1974,






G2839, G354


1982
G353
PRT
A. thaliana
Paralogous to G1889, G1974, G2839, G354


1983
G3531
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3532, G3533,






G3534, G4637, G4638, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


1984
G3531
PRT
Z. mays
Paralogous to G3532, G3533, G3534, G4637, G4638, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


1985
G3532
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3533,






G3534, G4637, G4638, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


1986
G3532
PRT
Z. mays
Paralogous to G3531, G3533, G3534, G4637, G4638, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


1987
G3533
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3532,






G3534, G4637, G4638, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


1988
G3533
PRT
Z. mays
Paralogous to G3531, G3532, G3534, G4637, G4638, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


1989
G3534
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3532,






G3533, G4637, G4638, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


1990
G3534
PRT
Z. mays
Paralogous to G3531, G3532, G3533, G4637, G4638, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


1991
G3537
DNA
G. max
Predicted polypeptide sequence is paralogous to G3538, G3539;






orthologous to G256, G666, G668, G932, G3384, G3385, G3386,






G3500, G3501, G3502, G3540, G3541


1992
G3537
PRT
G. max
Paralogous to G3538, G3539; Orthologous to G256, G666, G668,






G932, G3384, G3385, G3386, G3500, G3501, G3502, G3540, G3541


1993
G3538
DNA
G. max
Predicted polypeptide sequence is paralogous to G3537, G3539;






orthologous to G256, G666, G668, G932, G3384, G3385, G3386,






G3500, G3501, G3502, G3540, G3541


1994
G3538
PRT
G. max
Paralogous to G3537, G3539; Orthologous to G256, G666, G668,






G932, G3384, G3385, G3386, G3500, G3501, G3502, G3540, G3541


1995
G3539
DNA
G. max
Predicted polypeptide sequence is paralogous to G3537, G3538;






orthologous to G256, G666, G668, G932, G3384, G3385, G3386,






G3500, G3501, G3502, G3540, G3541


1996
G3539
PRT
G. max
Paralogous to G3537, G3538; Orthologous to G256, G666, G668,






G932, G3384, G3385, G3386, G3500, G3501, G3502, G3540, G3541


1997
G3540
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3541; orthologous






to G256, G666, G668, G932, G3384, G3385, G3386, G3500, G3501,






G3502, G3537, G3538, G3539


1998
G3540
PRT
Z. mays
Paralogous to G3541; Orthologous to G256, G666, G668, G932,






G3384, G3385, G3386, G3500, G3501, G3502, G3537, G3538,






G3539


1999
G3541
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3540; orthologous






to G256, G666, G668, G932, G3384, G3385, G3386, G3500, G3501,






G3502, G3537, G3538, G3539


2000
G3541
PRT
Z. mays
Paralogous to G3540; Orthologous to G256, G666, G668, G932,






G3384, G3385, G3386, G3500, G3501, G3502, G3537, G3538,






G3539


2001
G3542
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3544, G3545;






orthologous to G489, G714, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2002
G3542
PRT
O. sativa
Paralogous to G3544, G3545; Orthologous to G489, G714, G3547,






G3549, G3550, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2003
G3543
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1646, G715,






G3883, G3884, G3885, G3886, G3889, G4259


2004
G3543
PRT
O. sativa
Orthologous to G1646, G715, G3883, G3884, G3885, G3886, G3889,






G4259


2005
G3544
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3542, G3545;






orthologous to G489, G714, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2006
G3544
PRT
O. sativa
Paralogous to G3542, G3545; Orthologous to G489, G714, G3547,






G3549, G3550, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2007
G3545
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3542, G3544;






orthologous to G489, G714, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2008
G3545
PRT
O. sativa
Paralogous to G3542, G3544; Orthologous to G489, G714, G3547,






G3549, G3550, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2009
G3547
DNA
G. max
Predicted polypeptide sequence is paralogous to G3549, G3550;






orthologous to G489, G714, G3542, G3544, G3545, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2010
G3547
PRT
G. max
Paralogous to G3549, G3550; Orthologous to G489, G714, G3542,






G3544, G3545, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2011
G3549
DNA
G. max
Predicted polypeptide sequence is paralogous to G3547, G3550;






orthologous to G489, G714, G3542, G3544, G3545, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2012
G3549
PRT
G. max
Paralogous to G3547, G3550; Orthologous to G489, G714, G3542,






G3544, G3545, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2013
G3550
DNA
G. max
Predicted polypeptide sequence is paralogous to G3547, G3549;






orthologous to G489, G714, G3542, G3544, G3545, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G3896,






G4257, G4256


2014
G3550
PRT
G. max
Paralogous to G3547, G3549; Orthologous to G489, G714, G3542,






G3544, G3545, G3551, G3552, G3553, G3554, G3555, G3867,






G3892, G3893, G3894, G3896, G4257, G4256


2015
G3551
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3552, G4257,






G4256; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3553, G3554, G3555, G3867, G3892, G3893,






G3894, G3896


2016
G3551
PRT
Z. mays
Paralogous to G3552, G4257, G4256; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3553, G3554,






G3555, G3867, G3892, G3893, G3894, G3896


2017
G3552
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3551, G4257,






G4256; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3553, G3554, G3555, G3867, G3892, G3893,






G3894, G3896


2018
G3552
PRT
Z. mays
Paralogous to G3551, G4257, G4256; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3553, G3554,






G3555, G3867, G3892, G3893, G3894, G3896


2019
G3553
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3554, G3555,






G3894; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3867, G3892, G3893, G3896,






G4257, G4256


2020
G3553
PRT
S. lycopersicum
Paralogous to G3554, G3555, G3894; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3867, G3892, G3893, G3896, G4257, G4256


2021
G3554
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3553, G3555,






G3894; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3867, G3892, G3893, G3896,






G4257, G4256


2022
G3554
PRT
S. lycopersicum
Paralogous to G3553, G3555, G3894; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3867, G3892, G3893, G3896, G4257, G4256


2023
G3555
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3553, G3554,






G3894; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3867, G3892, G3893, G3896,






G4257, G4256


2024
G3555
PRT
S. lycopersicum
Paralogous to G3553, G3554, G3894; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3867, G3892, G3893, G3896, G4257, G4256


2025
G361
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1995, G2826,






G2838, G362, G370


2026
G361
PRT
A. thaliana
Paralogous to G1995, G2826, G2838, G362, G370


2027
G3643
DNA
G. max
Predicted polypeptide sequence is orthologous to G2133, G47,






G3644, G3645, G3646, G3647, G3649, G3650, G3651


2028
G3643
PRT
G. max
Orthologous to G2133, G47, G3644, G3645, G3646, G3647, G3649,






G3650, G3651


2029
G3644
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3649, G3651;






orthologous to G2133, G47, G3643, G3645, G3646, G3647, G3650


2030
G3644
PRT
O. sativa
Paralogous to G3649, G3651; Orthologous to G2133, G47, G3643,






G3645, G3646, G3647, G3650


2031
G3645
DNA
B. rapa
Predicted polypeptide sequence is orthologous to G2133, G47,





subsp.
G3643, G3644, G3646, G3647, G3649, G3650, G3651





Pekinensis



2032
G3645
PRT
B. rapa
Orthologous to G2133, G47, G3643, G3644, G3646, G3647, G3649,





subsp.
G3650, G3651





Pekinensis



2033
G3646
DNA
B. oleracea
Predicted polypeptide sequence is orthologous to G2133, G47,






G3643, G3644, G3645, G3647, G3649, G3650, G3651


2034
G3646
PRT
B. oleracea
Orthologous to G2133, G47, G3643, G3644, G3645, G3647, G3649,






G3650, G3651


2035
G3647
DNA
Z. elegans
Predicted polypeptide sequence is orthologous to G2133, G47,






G3643, G3644, G3645, G3646, G3649, G3650, G3651


2036
G3647
PRT
Z. elegans
Orthologous to G2133, G47, G3643, G3644, G3645, G3646, G3649,






G3650, G3651


2037
G3649
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3644, G3651;






orthologous to G2133, G47, G3643, G3645, G3646, G3647, G3650


2038
G3649
PRT
O. sativa
Paralogous to G3644, G3651; Orthologous to G2133, G47, G3643,






G3645, G3646, G3647, G3650


2039
G3650
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G2133, G47,






G3643, G3644, G3645, G3646, G3647, G3649, G3651


2040
G3650
PRT
Z. mays
Orthologous to G2133, G47, G3643, G3644, G3645, G3646, G3647,






G3649, G3651


2041
G3651
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3644, G3649;






orthologous to G2133, G47, G3643, G3645, G3646, G3647, G3650


2042
G3651
PRT
O. sativa
Paralogous to G3644, G3649; Orthologous to G2133, G47, G3643,






G3645, G3646, G3647, G3650


2043
G3656
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G12, G1277,






G1379, G24


2044
G3656
PRT
Z. mays
Orthologous to G12, G1277, G1379, G24


2045
G3659
DNA
B. oleracea
Predicted polypeptide sequence is paralogous to G3660; orthologous






to G22, G1006, G28, G3430, G3661, G3717, G3718, G3841, G3843,






G3844, G3845, G3846, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2046
G3659
PRT
B. oleracea
Paralogous to G3660; Orthologous to G22, G1006, G28, G3430,






G3661, G3717, G3718, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2047
G3660
DNA
B. oleracea
Predicted polypeptide sequence is paralogous to G3659; orthologous






to G22, G1006, G28, G3430, G3661, G3717, G3718, G3841, G3843,






G3844, G3845, G3846, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2048
G3660
PRT
B. oleracea
Paralogous to G3659; Orthologous to G22, G1006, G28, G3430,






G3661, G3717, G3718, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2049
G3661
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3856; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3717, G3718, G3841,






G3843, G3844, G3845, G3846, G3848, G3852, G3857, G3858,






G3864, G3865, G4626, G5171


2050
G3661
PRT
Z. mays
Paralogous to G3856; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3717, G3718, G3841, G3843, G3844, G3845,






G3846, G3848, G3852, G3857, G3858, G3864, G3865, G4626,






G5171


2051
G3663
DNA
L. corniculatus
Predicted polypeptide sequence is orthologous to G2999, G2998





var.






japonicus



2052
G3663
PRT
L. corniculatus
Orthologous to G2999, G2998





var.






japonicus



2053
G3680
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3681; orthologous






to G2989, G2990, G3691, G3859, G3860, G3861, G3934


2054
G3680
PRT
Z. mays
Paralogous to G3681; Orthologous to G2989, G2990, G3691, G3859,






G3860, G3861, G3934


2055
G3681
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3680; orthologous






to G2989, G2990, G3691, G3859, G3860, G3861, G3934


2056
G3681
PRT
Z. mays
Paralogous to G3680; Orthologous to G2989, G2990, G3691, G3859,






G3860, G3861, G3934


2057
G3691
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G2989, G2990,






G3680, G3681, G3859, G3860, G3861, G3934


2058
G3691
PRT
O. sativa
Orthologous to G2989, G2990, G3680, G3681, G3859, G3860,






G3861, G3934


2059
G370
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1995, G2826,






G2838, G361, G362


2060
G370
PRT
A. thaliana
Paralogous to G1995, G2826, G2838, G361, G362


2061
G3717
DNA
G. max
Predicted polypeptide sequence is paralogous to G3718; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3841, G3843,






G3844, G3845, G3846, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2062
G3717
PRT
G. max
Paralogous to G3718; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2063
G3718
DNA
G. max
Predicted polypeptide sequence is paralogous to G3717; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3841, G3843,






G3844, G3845, G3846, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2064
G3718
PRT
G. max
Paralogous to G3717; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3841, G3843, G3844, G3845, G3846,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2065
G3719
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3722, G3720,






G3727, G3728, G3804; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2066
G3719
PRT
Z. mays
Paralogous to G3722, G3720, G3727, G3728, G3804; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2067
G3720
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3722, G3719,






G3727, G3728, G3804; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2068
G3720
PRT
Z. mays
Paralogous to G3722, G3719, G3727, G3728, G3804; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2069
G3721
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3725, G3726,






G3729, G3730; orthologous to G1274, G3722, G3723, G3724,






G3731, G3732, G3803, G1275, G3719, G3720, G3727, G3728,






G3733, G3795, G3797, G3802, G3804


2070
G3721
PRT
O. sativa
Paralogous to G3725, G3726, G3729, G3730; Orthologous to G1274,






G3722, G3723, G3724, G3731, G3732, G3803, G1275, G3719,






G3720, G3727, G3728, G3733, G3795, G3797, G3802, G3804


2071
G3722
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3719, G3720,






G3727, G3728, G3804; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2072
G3722
PRT
Z. mays
Paralogous to G3719, G3720, G3727, G3728, G3804; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2073
G3723
DNA
G. max
Predicted polypeptide sequence is paralogous to G3724, G3803;






orthologous to G1274, G3722, G3731, G3732, G1275, G3719,






G3720, G3721, G3725, G3726, G3727, G3728, G3729, G3730,






G3733, G3795, G3797, G3802, G3804


2074
G3723
PRT
G. max
Paralogous to G3724, G3803; Orthologous to G1274, G3722, G3731,






G3732, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3802, G3804


2075
G3724
DNA
G. max
Predicted polypeptide sequence is paralogous to G3723, G3803;






orthologous to G1274, G3722, G3731, G3732, G1275, G3719,






G3720, G3721, G3725, G3726, G3727, G3728, G3729, G3730,






G3733, G3795, G3797, G3802, G3804


2076
G3724
PRT
G. max
Paralogous to G3723, G3803; Orthologous to G1274, G3722, G3731,






G3732, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3802, G3804


2077
G3725
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3721, G3726,






G3729, G3730; orthologous to G1274, G3722, G3723, G3724,






G3731, G3732, G3803, G1275, G3719, G3720, G3727, G3728,






G3733, G3795, G3797, G3802, G3804


2078
G3725
PRT
O. sativa
Paralogous to G3721, G3726, G3729, G3730; Orthologous to G1274,






G3722, G3723, G3724, G3731, G3732, G3803, G1275, G3719,






G3720, G3727, G3728, G3733, G3795, G3797, G3802, G3804


2079
G3726
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3721, G3725,






G3729, G3730; orthologous to G1274, G3722, G3723, G3724,






G3731, G3732, G3803, G1275, G3719, G3720, G3727, G3728,






G3733, G3795, G3797, G3802, G3804


2080
G3726
PRT
O. sativa
Paralogous to G3721, G3725, G3729, G3730; Orthologous to G1274,






G3722, G3723, G3724, G3731, G3732, G3803, G1275, G3719,






G3720, G3727, G3728, G3733, G3795, G3797, G3802, G3804


2081
G3727
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3722, G3719,






G3720, G3728, G3804; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2082
G3727
PRT
Z. mays
Paralogous to G3722, G3719, G3720, G3728, G3804; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2083
G3728
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3722, G3719,






G3720, G3727, G3804; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2084
G3728
PRT
Z. mays
Paralogous to G3722, G3719, G3720, G3727, G3804; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2085
G3729
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3721, G3725,






G3726, G3730; orthologous to G1274, G3722, G3723, G3724,






G3731, G3732, G3803, G1275, G3719, G3720, G3727, G3728,






G3733, G3795, G3797, G3802, G3804


2086
G3729
PRT
O. sativa
Paralogous to G3721, G3725, G3726, G3730; Orthologous to G1274,






G3722, G3723, G3724, G3731, G3732, G3803, G1275, G3719,






G3720, G3727, G3728, G3733, G3795, G3797, G3802, G3804


2087
G3730
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3721, G3725,






G3726, G3729; orthologous to G1274, G3722, G3723, G3724,






G3731, G3732, G3803, G1275, G3719, G3720, G3727, G3728,






G3733, G3795, G3797, G3802, G3804


2088
G3730
PRT
O. sativa
Paralogous to G3721, G3725, G3726, G3729; Orthologous to G1274,






G3722, G3723, G3724, G3731, G3732, G3803, G1275, G3719,






G3720, G3727, G3728, G3733, G3795, G3797, G3802, G3804


2089
G3731
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1274, G3722,






G3723, G3724, G3732, G3803, G1275, G3719, G3720, G3721,






G3725, G3726, G3727, G3728, G3729, G3730, G3733, G3795,






G3797, G3802, G3804


2090
G3731
PRT
S. lycopersicum
Orthologous to G1274, G3722, G3723, G3724, G3732, G3803,






G1275, G3719, G3720, G3721, G3725, G3726, G3727, G3728,






G3729, G3730, G3733, G3795, G3797, G3802, G3804


2091
G3732
DNA
S. tuberosum
Predicted polypeptide sequence is orthologous to G1274, G3722,






G3723, G3724, G3731, G3803, G1275, G3719, G3720, G3721,






G3725, G3726, G3727, G3728, G3729, G3730, G3733, G3795,






G3797, G3802, G3804


2092
G3732
PRT
S. tuberosum
Orthologous to G1274, G3722, G3723, G3724, G3731, G3803,






G1275, G3719, G3720, G3721, G3725, G3726, G3727, G3728,






G3729, G3730, G3733, G3795, G3797, G3802, G3804


2093
G3733
DNA
H. vulgare
Predicted polypeptide sequence is orthologous to G1274, G3722,






G3723, G3724, G3731, G3732, G3803, G1275, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3795,






G3797, G3802, G3804


2094
G3733
PRT
H. vulgare
Orthologous to G1274, G3722, G3723, G3724, G3731, G3732,






G3803, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3795, G3797, G3802, G3804


2095
G3735
DNA
M. truncatula
Predicted polypeptide sequence is orthologous to G1791, G1792,






G1795, G30, G3380, G3381, G3383, G3515, G3516, G3517, G3518,






G3519, G3520, G3736, G3737, G3794, G3739, G3929, G4328,






G4329, G4330


2096
G3735
PRT
M. truncatula
Orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3518, G3519, G3520, G3736, G3737,






G3794, G3739, G3929, G4328, G4329, G4330


2097
G3736
DNA
T. aestivum
Predicted polypeptide sequence is orthologous to G1791, G1792,






G1795, G30, G3380, G3381, G3383, G3515, G3516, G3517, G3518,






G3519, G3520, G3735, G3737, G3794, G3739, G3929, G4328,






G4329, G4330


2098
G3736
PRT
T. aestivum
Orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3518, G3519, G3520, G3735, G3737,






G3794, G3739, G3929, G4328, G4329, G4330


2099
G3737
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3380, G3381,






G3383, G3515; orthologous to G1791, G1792, G1795, G30, G3516,






G3517, G3518, G3519, G3520, G3735, G3736, G3794, G3739,






G3929, G4328, G4329, G4330


2100
G3737
PRT
O. sativa
Paralogous to G3380, G3381, G3383, G3515; Orthologous to G1791,






G1792, G1795, G30, G3516, G3517, G3518, G3519, G3520, G3735,






G3736, G3794, G3739, G3929, G4328, G4329, G4330


2101
G3739
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3516, G3517,






G3794, G3929; orthologous to G1791, G1792, G1795, G30, G3380,






G3381, G3383, G3515, G3518, G3519, G3520, G3735, G3736,






G3737, G4328, G4329, G4330


2102
G3739
PRT
Z. mays
Paralogous to G3516, G3517, G3794, G3929; Orthologous to G1791,






G1792, G1795, G30, G3380, G3381, G3383, G3515, G3518, G3519,






G3520, G3735, G3736, G3737, G4328, G4329, G4330


2103
G3740
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3741; orthologous






to G3763, G3764, G2149, G2766, G3772


2104
G3740
PRT
O. sativa
Paralogous to G3741; Orthologous to G3763, G3764, G2149, G2766,






G3772


2105
G3741
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3740; orthologous






to G3763, G3764, G2149, G2766, G3772


2106
G3741
PRT
O. sativa
Paralogous to G3740; Orthologous to G3763, G3764, G2149, G2766,






G3772


2107
G3748
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3749; orthologous






to G589, G1061, G3774, G2791, G3760


2108
G3748
PRT
O. sativa
Paralogous to G3749; Orthologous to G589, G1061, G3774, G2791,






G3760


2109
G3749
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3748; orthologous






to G589, G1061, G3774, G2791, G3760


2110
G3749
PRT
O. sativa
Paralogous to G3748; Orthologous to G589, G1061, G3774, G2791,






G3760


2111
G3750
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3752, G3751;






orthologous to G3753, G793, G591, G4311, G4312, G4313


2112
G3750
PRT
O. sativa
Paralogous to G3752, G3751; Orthologous to G3753, G793, G591,






G4311, G4312, G4313


2113
G3751
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3752, G3750;






orthologous to G3753, G793, G591, G4311, G4312, G4313


2114
G3751
PRT
O. sativa
Paralogous to G3752, G3750; Orthologous to G3753, G793, G591,






G4311, G4312, G4313


2115
G3752
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3751, G3750;






orthologous to G3753, G793, G591, G4311, G4312, G4313


2116
G3752
PRT
O. sativa
Paralogous to G3751, G3750; Orthologous to G3753, G793, G591,






G4311, G4312, G4313


2117
G3753
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4313; orthologous






to G3752, G3751, G793, G591, G3750, G4311, G4312


2118
G3753
PRT
Z. mays
Paralogous to G4313; Orthologous to G3752, G3751, G793, G591,






G3750, G4311, G4312


2119
G3760
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G3748, G3749,






G589, G1061, G3774, G2791


2120
G3760
PRT
Z. mays
Orthologous to G3748, G3749, G589, G1061, G3774, G2791


2121
G3763
DNA
G. max
Predicted polypeptide sequence is paralogous to G3764, G3772;






orthologous to G2149, G2766, G3740, G3741


2122
G3763
PRT
G. max
Paralogous to G3764, G3772; Orthologous to G2149, G2766, G3740,






G3741


2123
G3764
DNA
G. max
Predicted polypeptide sequence is paralogous to G3763, G3772;






orthologous to G2149, G2766, G3740, G3741


2124
G3764
PRT
G. max
Paralogous to G3763, G3772; Orthologous to G2149, G2766, G3740,






G3741


2125
G3772
DNA
G. max
Predicted polypeptide sequence is paralogous to G3763, G3764;






orthologous to G2149, G2766, G3740, G3741


2126
G3772
PRT
G. max
Paralogous to G3763, G3764; Orthologous to G2149, G2766, G3740,






G3741


2127
G3774
DNA
G. max
Predicted polypeptide sequence is orthologous to G3748, G3749,






G589, G1061, G2791, G3760


2128
G3774
PRT
G. max
Orthologous to G3748, G3749, G589, G1061, G2791, G3760


2129
G3794
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3516, G3517,






G3739, G3929; orthologous to G1791, G1792, G1795, G30, G3380,






G3381, G3383, G3515, G3518, G3519, G3520, G3735, G3736,






G3737, G4328, G4329, G4330


2130
G3794
PRT
Z. mays
Paralogous to G3516, G3517, G3739, G3929; Orthologous to G1791,






G1792, G1795, G30, G3380, G3381, G3383, G3515, G3518, G3519,






G3520, G3735, G3736, G3737, G4328, G4329, G4330


2131
G3795
DNA
Capsicum
Predicted polypeptide sequence is orthologous to G1274, G3722,





annuum
G3723, G3724, G3731, G3732, G3803, G1275, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3733,






G3797, G3802, G3804


2132
G3795
PRT
Capsicum
Orthologous to G1274, G3722, G3723, G3724, G3731, G3732,





annuum
G3803, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3797, G3802, G3804


2133
G3797
DNA
Lactuca
Predicted polypeptide sequence is orthologous to G1274, G3722,





sativa
G3723, G3724, G3731, G3732, G3803, G1275, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3733,






G3795, G3802, G3804


2134
G3797
PRT
Lactuca
Orthologous to G1274, G3722, G3723, G3724, G3731, G3732,





sativa
G3803, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3802, G3804


2135
G38
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1141


2136
G38
PRT
A. thaliana
Paralogous to G1141


2137
G3802
DNA
Sorghum
Predicted polypeptide sequence is orthologous to G1274, G3722,





bicolor
G3723, G3724, G3731, G3732, G3803, G1275, G3719, G3720,






G3721, G3725, G3726, G3727, G3728, G3729, G3730, G3733,






G3795, G3797, G3804


2138
G3802
PRT
Sorghum
Orthologous to G1274, G3722, G3723, G3724, G3731, G3732,





bicolor
G3803, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3804


2139
G3803
DNA
G. max
Predicted polypeptide sequence is paralogous to G3723, G3724;






orthologous to G1274, G3722, G3731, G3732, G1275, G3719,






G3720, G3721, G3725, G3726, G3727, G3728, G3729, G3730,






G3733, G3795, G3797, G3802, G3804


2140
G3803
PRT
G. max
Paralogous to G3723, G3724; Orthologous to G1274, G3722, G3731,






G3732, G1275, G3719, G3720, G3721, G3725, G3726, G3727,






G3728, G3729, G3730, G3733, G3795, G3797, G3802, G3804


2141
G3804
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3722, G3719,






G3720, G3727, G3728; orthologous to G1274, G3723, G3724,






G3731, G3732, G3803, G1275, G3721, G3725, G3726, G3729,






G3730, G3733, G3795, G3797, G3802


2142
G3804
PRT
Z. mays
Paralogous to G3722, G3719, G3720, G3727, G3728; Orthologous to






G1274, G3723, G3724, G3731, G3732, G3803, G1275, G3721,






G3725, G3726, G3729, G3730, G3733, G3795, G3797, G3802


2143
G3815
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1768, G2633,






G2697, G313, G852, G3825


2144
G3815
PRT
O. sativa
Orthologous to G1768, G2633, G2697, G313, G852, G3825


2145
G3816
DNA
T. aestivum
Predicted polypeptide sequence is orthologous to G2738, G3009,






G307, G308, G309, G3817, G3818, G3819


2146
G3816
PRT
T. aestivum
Orthologous to G2738, G3009, G307, G308, G309, G3817, G3818,






G3819


2147
G3817
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3819; orthologous






to G2738, G3009, G307, G308, G309, G3816, G3818


2148
G3817
PRT
O. sativa
Paralogous to G3819; Orthologous to G2738, G3009, G307, G308,






G309, G3816, G3818


2149
G3818
DNA
G.max
Predicted polypeptide sequence is orthologous to G2738, G3009,






G307, G308, G309, G3816, G3817, G3819


2150
G3818
PRT
G. max
Orthologous to G2738, G3009, G307, G308, G309, G3816, G3817,






G3819


2151
G3819
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3817; orthologous






to G2738, G3009, G307, G308, G309, G3816, G3818


2152
G3819
PRT
O. sativa
Paralogous to G3817; Orthologous to G2738, G3009, G307, G308,






G309, G3816, G3818


2153
G3821
DNA
Pisum
Predicted polypeptide sequence is orthologous to G306, G3822





sativum



2154
G3821
PRT
Pisum
Orthologous to G306, G3822





sativum



2155
G3822
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G306, G3821


2156
G3822
PRT
Z. mays
Orthologous to G306, G3821


2157
G3825
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1768, G2633,






G2697, G313, G852, G3815


2158
G3825
PRT
S. lycopersicum
Orthologous to G1768, G2633, G2697, G313, G852, G3815


2159
G3839
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3937; orthologous






to G620, G1821, G3939


2160
G3839
PRT
Z. mays
Paralogous to G3937; Orthologous to G620, G1821, G3939


2161
G384
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1588, G385


2162
G384
PRT
A. thaliana
Paralogous to G1588, G385


2163
G3841
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3843, G3852,






G4626; orthologous to G22, G1006, G28, G3430, G3659, G3660,






G3661, G3717, G3718, G3844, G3845, G3846, G3848, G3856,






G3857, G3858, G3864, G3865, G5171


2164
G3841
PRT
S. lycopersicum
Paralogous to G3843, G3852, G4626; Orthologous to G22, G1006,






G28, G3430, G3659, G3660, G3661, G3717, G3718, G3844, G3845,






G3846, G3848, G3856, G3857, G3858, G3864, G3865, G5171


2165
G3843
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3841, G3852,






G4626; orthologous to G22, G1006, G28, G3430, G3659, G3660,






G3661, G3717, G3718, G3844, G3845, G3846, G3848, G3856,






G3857, G3858, G3864, G3865, G5171


2166
G3843
PRT
S. lycopersicum
Paralogous to G3841, G3852, G4626; Orthologous to G22, G1006,






G28, G3430, G3659, G3660, G3661, G3717, G3718, G3844, G3845,






G3846, G3848, G3856, G3857, G3858, G3864, G3865, G5171


2167
G3844
DNA
M. truncatula
Predicted polypeptide sequence is orthologous to G22, G1006, G28,






G3430, G3659, G3660, G3661, G3717, G3718, G3841, G3843,






G3845, G3846, G3848, G3852, G3856, G3857, G3858, G3864,






G3865, G4626, G5171


2168
G3844
PRT
M. truncatula
Orthologous to G22, G1006, G28, G3430, G3659, G3660, G3661,






G3717, G3718, G3841, G3843, G3845, G3846, G3848, G3852,






G3856, G3857, G3858, G3864, G3865, G4626, G5171


2169
G3845
DNA
N. tabacum
Predicted polypeptide sequence is paralogous to G3846; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2170
G3845
PRT
N. tabacum
Paralogous to G3846; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2171
G3846
DNA
N. tabacum
Predicted polypeptide sequence is paralogous to G3845; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3848, G3852, G3856, G3857, G3858,






G3864, G3865, G4626, G5171


2172
G3846
PRT
N. tabacum
Paralogous to G3845; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3848, G3852, G3856, G3857, G3858, G3864, G3865, G4626,






G5171


2173
G3848
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3430, G5171;






orthologous to G22, G1006, G28, G3659, G3660, G3661, G3717,






G3718, G3841, G3843, G3844, G3845, G3846, G3852, G3856,






G3857, G3858, G3864, G3865, G4626


2174
G3848
PRT
O. sativa
Paralogous to G3430, G5171; Orthologous to G22, G1006, G28,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3852, G3856, G3857, G3858, G3864, G3865,






G4626


2175
G3849
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1419, G43, G46,






G1004, G29


2176
G3849
PRT
S. lycopersicum
Orthologous to G1419, G43, G46, G1004, G29


2177
G3851
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G19


2178
G3851
PRT
S. lycopersicum
Orthologous to G19


2179
G3852
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3841, G3843,






G4626; orthologous to G22, G1006, G28, G3430, G3659, G3660,






G3661, G3717, G3718, G3844, G3845, G3846, G3848, G3856,






G3857, G3858, G3864, G3865, G5171


2180
G3852
PRT
S. lycopersicum
Paralogous to G3841, G3843, G4626; Orthologous to G22, G1006,






G28, G3430, G3659, G3660, G3661, G3717, G3718, G3844, G3845,






G3846, G3848, G3856, G3857, G3858, G3864, G3865, G5171


2181
G3856
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3661; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3717, G3718, G3841,






G3843, G3844, G3845, G3846, G3848, G3852, G3857, G3858,






G3864, G3865, G4626, G5171


2182
G3856
PRT
Z. mays
Paralogous to G3661; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3717, G3718, G3841, G3843, G3844, G3845,






G3846, G3848, G3852, G3857, G3858, G3864, G3865, G4626,






G5171


2183
G3857
DNA
S. tuberosum
Predicted polypeptide sequence is paralogous to G3858; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3864, G3865, G4626, G5171


2184
G3857
PRT
S. tuberosum
Paralogous to G3858; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3848, G3852, G3856, G3864, G3865, G4626,






G5171


2185
G3858
DNA
S. tuberosum
Predicted polypeptide sequence is paralogous to G3857; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3864, G3865, G4626, G5171


2186
G3858
PRT
S. tuberosum
Paralogous to G3857; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3848, G3852, G3856, G3864, G3865, G4626,






G5171


2187
G3859
DNA
Flaveria
Predicted polypeptide sequence is orthologous to G2989, G2990,





trinervia
G3680, G3681, G3691, G3860, G3861, G3934


2188
G3859
PRT
Flaveria
Orthologous to G2989, G2990, G3680, G3681, G3691, G3860,





trinervia
G3861, G3934


2189
G386
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G707


2190
G386
PRT
A. thaliana
Paralogous to G707


2191
G3860
DNA
Flaveria
Predicted polypeptide sequence is paralogous to G3861; orthologous





bidentis
to G2989, G2990, G3680, G3681, G3691, G3859, G3934


2192
G3860
PRT
Flaveria
Paralogous to G3861; Orthologous to G2989, G2990, G3680, G3681,





bidentis
G3691, G3859, G3934


2193
G3861
DNA
Flaveria
Predicted polypeptide sequence is paralogous to G3860; orthologous





bidentis
to G2989, G2990, G3680, G3681, G3691, G3859, G3934


2194
G3861
PRT
Flaveria
Paralogous to G3860; Orthologous to G2989, G2990, G3680, G3681,





bidentis
G3691, G3859, G3934


2195
G3864
DNA
T. aestivum
Predicted polypeptide sequence is paralogous to G3865; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3857, G3858, G4626, G5171


2196
G3864
PRT
T. aestivum
Paralogous to G3865; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3848, G3852, G3856, G3857, G3858, G4626,






G5171


2197
G3865
DNA
T. aestivum
Predicted polypeptide sequence is paralogous to G3864; orthologous






to G22, G1006, G28, G3430, G3659, G3660, G3661, G3717, G3718,






G3841, G3843, G3844, G3845, G3846, G3848, G3852, G3856,






G3857, G3858, G4626, G5171


2198
G3865
PRT
T. aestivum
Paralogous to G3864; Orthologous to G22, G1006, G28, G3430,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3848, G3852, G3856, G3857, G3858, G4626,






G5171


2199
G3866
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3436, G3437, G3876, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


2200
G3866
PRT
Z. mays
Paralogous to G3434, G3435, G3436, G3437, G3876, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


2201
G3867
DNA
P. patens
Predicted polypeptide sequence is orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3892, G3893, G3894, G3896, G4257,






G4256


2202
G3867
PRT
P. patens
Orthologous to G489, G714, G3542, G3544, G3545, G3547, G3549,






G3550, G3551, G3552, G3553, G3554, G3555, G3892, G3893,






G3894, G3896, G4257, G4256


2203
G3868
DNA
P. patens
Predicted polypeptide sequence is paralogous to G3870; orthologous






to G1364, G2345, G481, G482, G485, G3394, G3395, G3396,






G3397, G3398, G3429, G3434, G3435, G3436, G3437, G3470,






G3471, G3472, G3473, G3474, G3475, G3476, G3478, G3866,






G3873, G3874, G3875, G3876, G3938, G4272, G4276


2204
G3868
PRT
P. patens
Paralogous to G3870; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3470, G3471, G3472, G3473, G3474,






G3475, G3476, G3478, G3866, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


2205
G3870
DNA
P. patens
Predicted polypeptide sequence is paralogous to G3868; orthologous






to G1364, G2345, G481, G482, G485, G3394, G3395, G3396,






G3397, G3398, G3429, G3434, G3435, G3436, G3437, G3470,






G3471, G3472, G3473, G3474, G3475, G3476, G3478, G3866,






G3873, G3874, G3875, G3876, G3938, G4272, G4276


2206
G3870
PRT
P. patens
Paralogous to G3868; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3470, G3471, G3472, G3473, G3474,






G3475, G3476, G3478, G3866, G3873, G3874, G3875, G3876,






G3938, G4272, G4276


2207
G3873
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3874, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


2208
G3873
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3874, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


2209
G3874
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3873, G3875;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


2210
G3874
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3873, G3875; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


2211
G3875
DNA
G. max
Predicted polypeptide sequence is paralogous to G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3873, G3874;






orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3434, G3435, G3436, G3437,






G3866, G3868, G3870, G3876, G3938, G4272, G4276


2212
G3875
PRT
G. max
Paralogous to G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3873, G3874; Orthologous to G1364, G2345, G481, G482,






G485, G3394, G3395, G3396, G3397, G3398, G3429, G3434,






G3435, G3436, G3437, G3866, G3868, G3870, G3876, G3938,






G4272, G4276


2213
G3876
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3436, G3437, G3866, G4272, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


2214
G3876
PRT
Z. mays
Paralogous to G3434, G3435, G3436, G3437, G3866, G4272, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


2215
G3883
DNA
G. raimondii
Predicted polypeptide sequence is orthologous to G1646, G715,






G3884, G3885, G3886, G3889, G3543, G4259


2216
G3883
PRT
G. raimondii
Orthologous to G1646, G715, G3884, G3885, G3886, G3889, G3543,






G4259


2217
G3884
DNA
N. benthamiana
Predicted polypeptide sequence is orthologous to G1646, G715,






G3883, G3885, G3886, G3889, G3543, G4259


2218
G3884
PRT
N. benthamiana
Orthologous to G1646, G715, G3883, G3885, G3886, G3889, G3543,






G4259


2219
G3885
DNA
S. tuberosum
Predicted polypeptide sequence is orthologous to G1646, G715,






G3883, G3884, G3886, G3889, G3543, G4259


2220
G3885
PRT
S. tuberosum
Orthologous to G1646, G715, G3883, G3884, G3886, G3889, G3543,






G4259


2221
G3886
DNA
G. max
Predicted polypeptide sequence is orthologous to G1646, G715,






G3883, G3884, G3885, G3889, G3543, G4259


2222
G3886
PRT
G. max
Orthologous to G1646, G715, G3883, G3884, G3885, G3889, G3543,






G4259


2223
G3889
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4259; orthologous






to G1646, G715, G3883, G3884, G3885, G3886, G3543


2224
G3889
PRT
Z. mays
Paralogous to G4259; Orthologous to G1646, G715, G3883, G3884,






G3885, G3886, G3543


2225
G389
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1535


2226
G389
PRT
A. thaliana
Paralogous to G1535


2227
G3892
DNA
S. tuberosum
Predicted polypeptide sequence is paralogous to G3893; orthologous






to G489, G714, G3542, G3544, G3545, G3547, G3549, G3550,






G3551, G3552, G3553, G3554, G3555, G3867, G3894, G3896,






G4257, G4256


2228
G3892
PRT
S. tuberosum
Paralogous to G3893; Orthologous to G489, G714, G3542, G3544,






G3545, G3547, G3549, G3550, G3551, G3552, G3553, G3554,






G3555, G3867, G3894, G3896, G4257, G4256


2229
G3893
DNA
S. tuberosum
Predicted polypeptide sequence is paralogous to G3892; orthologous






to G489, G714, G3542, G3544, G3545, G3547, G3549, G3550,






G3551, G3552, G3553, G3554, G3555, G3867, G3894, G3896,






G4257, G4256


2230
G3893
PRT
S. tuberosum
Paralogous to G3892; Orthologous to G489, G714, G3542, G3544,






G3545, G3547, G3549, G3550, G3551, G3552, G3553, G3554,






G3555, G3867, G3894, G3896, G4257, G4256


2231
G3894
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3553, G3554,






G3555; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3551, G3552, G3867, G3892, G3893, G3896,






G4257, G4256


2232
G3894
PRT
S. lycopersicum
Paralogous to G3553, G3554, G3555; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3867, G3892, G3893, G3896, G4257, G4256


2233
G3896
DNA
M. truncatula
Predicted polypeptide sequence is orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3551, G3552,






G3553, G3554, G3555, G3867, G3892, G3893, G3894, G4257,






G4256


2234
G3896
PRT
M. truncatula
Orthologous to G489, G714, G3542, G3544, G3545, G3547, G3549,






G3550, G3551, G3552, G3553, G3554, G3555, G3867, G3892,






G3893, G3894, G4257, G4256


2235
G390
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1548, G391, G392,






G438


2236
G390
PRT
A. thaliana
Paralogous to G1548, G391, G392, G438


2237
G391
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1548, G390, G392,






G438


2238
G391
PRT
A. thaliana
Paralogous to G1548, G390, G392, G438


2239
G3924
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G926, G2632,






G4261


2240
G3924
PRT
O. sativa
Orthologous to G926, G2632, G4261


2241
G3929
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3516, G3517,






G3794, G3739; orthologous to G1791, G1792, G1795, G30, G3380,






G3381, G3383, G3515, G3518, G3519, G3520, G3735, G3736,






G3737, G4328, G4329, G4330


2242
G3929
PRT
Z. mays
Paralogous to G3516, G3517, G3794, G3739; Orthologous to G1791,






G1792, G1795, G30, G3380, G3381, G3383, G3515, G3518, G3519,






G3520, G3735, G3736, G3737, G4328, G4329, G4330


2243
G3930
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1816, G225, G226,






G2718, G682; orthologous to G3392, G3393, G3431, G3444, G3445,






G3446, G3447, G3448, G3449, G3450


2244
G3930
PRT
A. thaliana
Paralogous to G1816, G225, G226, G2718, G682; Orthologous to






G3392, G3393, G3431, G3444, G3445, G3446, G3447, G3448,






G3449, G3450


2245
G3934
DNA
G. max
Predicted polypeptide sequence is orthologous to G2989, G2990,






G3680, G3681, G3691, G3859, G3860, G3861


2246
G3934
PRT
G. max
Orthologous to G2989, G2990, G3680, G3681, G3691, G3859,






G3860, G3861


2247
G3937
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3839; orthologous






to G620, G1821, G3939


2248
G3937
PRT
Z. mays
Paralogous to G3839; Orthologous to G620, G1821, G3939


2249
G3938
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3395, G3396,






G3397, G3398, G3429; orthologous to G1364, G2345, G481, G482,






G485, G3394, G3434, G3435, G3436, G3437, G3470, G3471,






G3472, G3473, G3474, G3475, G3476, G3478, G3866, G3868,






G3870, G3873, G3874, G3875, G3876, G4272, G4276


2250
G3938
PRT
O. sativa
Paralogous to G3395, G3396, G3397, G3398, G3429; Orthologous to






G1364, G2345, G481, G482, G485, G3394, G3434, G3435, G3436,






G3437, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3866, G3868, G3870, G3873, G3874, G3875, G3876,






G4272, G4276


2251
G3939
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G620, G1821,






G3839, G3937


2252
G3939
PRT
O. sativa
Orthologous to G620, G1821, G3839, G3937


2253
G3957
DNA
Capsicum
Predicted polypeptide sequence is orthologous to G14, G4, G3974





annuum



2254
G3957
PRT
Capsicum
Orthologous to G14, G4, G3974





annuum



2255
G3974
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G14, G4, G3957


2256
G3974
PRT
S. lycopersicum
Orthologous to G14, G4, G3957


2257
G398
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G399, G964


2258
G398
PRT
A. thaliana
Paralogous to G399, G964


2259
G3980
DNA
G. max
Predicted polypeptide sequence is paralogous to G3484, G3485,






G3981; orthologous to G152, G153, G1760, G860, G3479, G3480,






G3481, G3482, G3483, G3487, G3488, G3489, G3982


2260
G3980
PRT
G. max
Paralogous to G3484, G3485, G3981; Orthologous to G152, G153,






G1760, G860, G3479, G3480, G3481, G3482, G3483, G3487,






G3488, G3489, G3982


2261
G3981
DNA
G. max
Predicted polypeptide sequence is paralogous to G3484, G3485,






G3980; orthologous to G152, G153, G1760, G860, G3479, G3480,






G3481, G3482, G3483, G3487, G3488, G3489, G3982


2262
G3981
PRT
G. max
Paralogous to G3484, G3485, G3980; Orthologous to G152, G153,






G1760, G860, G3479, G3480, G3481, G3482, G3483, G3487,






G3488, G3489, G3982


2263
G3982
DNA
A. majus
Predicted polypeptide sequence is orthologous to G152, G153,






G1760, G860, G3479, G3480, G3481, G3482, G3483, G3484,






G3485, G3487, G3488, G3489, G3980, G3981


2264
G3982
PRT
A. majus
Orthologous to G152, G153, G1760, G860, G3479, G3480, G3481,






G3482, G3483, G3484, G3485, G3487, G3488, G3489, G3980,






G3981


2265
G3984
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1140, G861,






G3985, G3986, G3987, G3988, G3989, G3990, G3991, G3992,






G3998, G3999, G4060


2266
G3984
PRT
S. lycopersicum
Orthologous to G1140, G861, G3985, G3986, G3987, G3988, G3989,






G3990, G3991, G3992, G3998, G3999, G4060


2267
G3985
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3986, G3987,






G3990; orthologous to G1140, G861, G3984, G3988, G3989, G3991,






G3992, G3998, G3999, G4060


2268
G3985
PRT
Z. mays
Paralogous to G3986, G3987, G3990; Orthologous to G1140, G861,






G3984, G3988, G3989, G3991, G3992, G3998, G3999, G4060


2269
G3986
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3985, G3987,






G3990; orthologous to G1140, G861, G3984, G3988, G3989, G3991,






G3992, G3998, G3999, G4060


2270
G3986
PRT
Z. mays
Paralogous to G3985, G3987, G3990; Orthologous to G1140, G861,






G3984, G3988, G3989, G3991, G3992, G3998, G3999, G4060


2271
G3987
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3985, G3986,






G3990; orthologous to G1140, G861, G3984, G3988, G3989, G3991,






G3992, G3998, G3999, G4060


2272
G3987
PRT
Z. mays
Paralogous to G3985, G3986, G3990; Orthologous to G1140, G861,






G3984, G3988, G3989, G3991, G3992, G3998, G3999, G4060


2273
G3988
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4060; orthologous






to G1140, G861, G3984, G3985, G3986, G3987, G3989, G3990,






G3991, G3992, G3998, G3999


2274
G3988
PRT
O. sativa
Paralogous to G4060; Orthologous to G1140, G861, G3984, G3985,






G3986, G3987, G3989, G3990, G3991, G3992, G3998, G3999


2275
G3989
DNA
G. max
Predicted polypeptide sequence is paralogous to G3991, G3992;






orthologous to G1140, G861, G3984, G3985, G3986, G3987, G3988,






G3990, G3998, G3999, G4060


2276
G3989
PRT
G. max
Paralogous to G3991, G3992; Orthologous to G1140, G861, G3984,






G3985, G3986, G3987, G3988, G3990, G3998, G3999, G4060


2277
G3990
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3985, G3986,






G3987; orthologous to G1140, G861, G3984, G3988, G3989, G3991,






G3992, G3998, G3999, G4060


2278
G3990
PRT
Z. mays
Paralogous to G3985, G3986, G3987; Orthologous to G1140, G861,






G3984, G3988, G3989, G3991, G3992, G3998, G3999, G4060


2279
G3991
DNA
G. max
Predicted polypeptide sequence is paralogous to G3989, G3992;






orthologous to G1140, G861, G3984, G3985, G3986, G3987, G3988,






G3990, G3998, G3999, G4060


2280
G3991
PRT
G. max
Paralogous to G3989, G3992; Orthologous to G1140, G861, G3984,






G3985, G3986, G3987, G3988, G3990, G3998, G3999, G4060


2281
G3992
DNA
G. max
Predicted polypeptide sequence is paralogous to G3989, G3991;






orthologous to G1140, G861, G3984, G3985, G3986, G3987, G3988,






G3990, G3998, G3999, G4060


2282
G3992
PRT
G. max
Paralogous to G3989, G3991; Orthologous to G1140, G861, G3984,






G3985, G3986, G3987, G3988, G3990, G3998, G3999, G4060


2283
G3998
DNA
B. rapa
Predicted polypeptide sequence is orthologous to G1140, G861,






G3984, G3985, G3986, G3987, G3988, G3989, G3990, G3991,






G3992, G3999, G4060


2284
G3998
PRT
B. rapa
Orthologous to G1140, G861, G3984, G3985, G3986, G3987, G3988,






G3989, G3990, G3991, G3992, G3999, G4060


2285
G3999
DNA
E. occidentalis
Predicted polypeptide sequence is orthologous to G1140, G861,






G3984, G3985, G3986, G3987, G3988, G3989, G3990, G3991,






G3992, G3998, G4060


2286
G3999
PRT
E. occidentalis
Orthologous to G1140, G861, G3984, G3985, G3986, G3987, G3988,






G3989, G3990, G3991, G3992, G3998, G4060


2287
G40
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2107, G2513, G41,






G42, G912; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


2288
G40
PRT
A. thaliana
Paralogous to G2107, G2513, G41, G42, G912; Orthologous to






G3362, G3364, G3365, G3366, G3367, G3368, G3370, G3371,






G3372, G3373, G3374, G3375, G3376, G3377, G3378, G3379,






G3438, G3439, G3440, G3441, G3442, G3369, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


2289
G4019
DNA
G. max
Predicted polypeptide sequence is orthologous to G1478, G1929


2290
G4019
PRT
G. max
Orthologous to G1478, G1929


2291
G4060
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3988; orthologous






to G1140, G861, G3984, G3985, G3986, G3987, G3989, G3990,






G3991, G3992, G3998, G3999


2292
G4060
PRT
O. sativa
Paralogous to G3988; Orthologous to G1140, G861, G3984, G3985,






G3986, G3987, G3989, G3990, G3991, G3992, G3998, G3999


2293
G4061
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G149, G627,






G1011, G154, G1797, G1798, G4062, G4063, G4064, G4065,






G4066, G4067


2294
G4061
PRT
S. lycopersicum
Orthologous to G149, G627, G1011, G154, G1797, G1798, G4062,






G4063, G4064, G4065, G4066, G4067


2295
G4062
DNA
B. rapa
Predicted polypeptide sequence is orthologous to G149, G627,






G1011, G154, G1797, G1798, G4061, G4063, G4064, G4065,






G4066, G4067


2296
G4062
PRT
B. rapa
Orthologous to G149, G627, G1011, G154, G1797, G1798, G4061,






G4063, G4064, G4065, G4066, G4067


2297
G4063
DNA
G. max
Predicted polypeptide sequence is paralogous to G4064; orthologous






to G149, G627, G1011, G154, G1797, G1798, G4061, G4062,






G4065, G4066, G4067


2298
G4063
PRT
G. max
Paralogous to G4064; Orthologous to G149, G627, G1011, G154,






G1797, G1798, G4061, G4062, G4065, G4066, G4067


2299
G4064
DNA
G. max
Predicted polypeptide sequence is paralogous to G4063; orthologous






to G149, G627, G1011, G154, G1797, G1798, G4061, G4062,






G4065, G4066, G4067


2300
G4064
PRT
G. max
Paralogous to G4063; Orthologous to G149, G627, G1011, G154,






G1797, G1798, G4061, G4062, G4065, G4066, G4067


2301
G4065
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G149, G627,






G1011, G154, G1797, G1798, G4061, G4062, G4063, G4064,






G4066, G4067


2302
G4065
PRT
Z. mays
Orthologous to G149, G627, G1011, G154, G1797, G1798, G4061,






G4062, G4063, G4064, G4066, G4067


2303
G4066
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4067; orthologous






to G149, G627, G1011, G154, G1797, G1798, G4061, G4062,






G4063, G4064, G4065


2304
G4066
PRT
O. sativa
Paralogous to G4067; Orthologous to G149, G627, G1011, G154,






G1797, G1798, G4061, G4062, G4063, G4064, G4065


2305
G4067
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4066; orthologous






to G149, G627, G1011, G154, G1797, G1798, G4061, G4062,






G4063, G4064, G4065


2306
G4067
PRT
O. sativa
Paralogous to G4066; Orthologous to G149, G627, G1011, G154,






G1797, G1798, G4061, G4062, G4063, G4064, G4065


2307
G4079
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1750, G1421,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287, G4288,






G4289, G4290, G4291, G4292, G4293


2308
G4079
PRT
S. lycopersicum
Orthologous to G1750, G1421, G4080, G440, G864, G4283, G4284,






G4285, G4286, G4287, G4288, G4289, G4290, G4291, G4292,






G4293


2309
G4080
DNA
N. tabacum
Predicted polypeptide sequence is orthologous to G1750, G1421,






G4079, G440, G864, G4283, G4284, G4285, G4286, G4287, G4288,






G4289, G4290, G4291, G4292, G4293


2310
G4080
PRT
N. tabacum
Orthologous to G1750, G1421, G4079, G440, G864, G4283, G4284,






G4285, G4286, G4287, G4288, G4289, G4290, G4291, G4292,






G4293


2311
G41
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G40, G2107, G2513,






G42, G912; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


2312
G41
PRT
A. thaliana
Paralogous to G40, G2107, G2513, G42, G912; Orthologous to






G3362, G3364, G3365, G3366, G3367, G3368, G3370, G3371,






G3372, G3373, G3374, G3375, G3376, G3377, G3378, G3379,






G3438, G3439, G3440, G3441, G3442, G3369, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


2313
G412
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1538, G1545


2314
G412
PRT
A. thaliana
Paralogous to G1538, G1545


2315
G42
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G40, G2107, G2513,






G41, G912; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


2316
G42
PRT
A. thaliana
Paralogous to G40, G2107, G2513, G41, G912; Orthologous to






G3362, G3364, G3365, G3366, G3367, G3368, G3370, G3371,






G3372, G3373, G3374, G3375, G3376, G3377, G3378, G3379,






G3438, G3439, G3440, G3441, G3442, G3369, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


2317
G4218
DNA
G. max
Predicted polypeptide sequence is paralogous to G4219, G4220,






G4221, G4222, G4223, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2318
G4218
PRT
G. max
Paralogous to G4219, G4220, G4221, G4222, G4223, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2319
G4219
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4220,






G4221, G4222, G4223, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2320
G4219
PRT
G. max
Paralogous to G4218, G4220, G4221, G4222, G4223, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2321
G4220
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4221, G4222, G4223, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2322
G4220
PRT
G. max
Paralogous to G4218, G4219, G4221, G4222, G4223, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2323
G4221
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4220, G4222, G4223, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2324
G4221
PRT
G. max
Paralogous to G4218, G4219, G4220, G4222, G4223, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2325
G4222
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4220, G4221, G4223, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2326
G4222
PRT
G. max
Paralogous to G4218, G4219, G4220, G4221, G4223, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2327
G4223
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4220, G4221, G4222, G4224, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2328
G4223
PRT
G. max
Paralogous to G4218, G4219, G4220, G4221, G4222, G4224, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2329
G4224
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4220, G4221, G4222, G4223, G4225; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2330
G4224
PRT
G. max
Paralogous to G4218, G4219, G4220, G4221, G4222, G4223, G4225;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2331
G4225
DNA
G. max
Predicted polypeptide sequence is paralogous to G4218, G4219,






G4220, G4221, G4222, G4223, G4224; orthologous to G207, G227,






G230, G242, G4226, G4227, G4228, G4229, G4230, G4231, G4232,






G4234, G4235, G4236, G4237, G4238


2332
G4225
PRT
G. max
Paralogous to G4218, G4219, G4220, G4221, G4222, G4223, G4224;






Orthologous to G207, G227, G230, G242, G4226, G4227, G4228,






G4229, G4230, G4231, G4232, G4234, G4235, G4236, G4237,






G4238


2333
G4226
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4227, G4228,






G4229, G4230, G4231, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2334
G4226
PRT
Z. mays
Paralogous to G4227, G4228, G4229, G4230, G4231, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2335
G4227
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4228,






G4229, G4230, G4231, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2336
G4227
PRT
Z. mays
Paralogous to G4226, G4228, G4229, G4230, G4231, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2337
G4228
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4227,






G4229, G4230, G4231, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2338
G4228
PRT
Z. mays
Paralogous to G4226, G4227, G4229, G4230, G4231, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2339
G4229
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4227,






G4228, G4230, G4231, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2340
G4229
PRT
Z. mays
Paralogous to G4226, G4227, G4228, G4230, G4231, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2341
G4230
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4227,






G4228, G4229, G4231, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2342
G4230
PRT
Z. mays
Paralogous to G4226, G4227, G4228, G4229, G4231, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2343
G4231
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4227,






G4228, G4229, G4230, G4232; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2344
G4231
PRT
Z. mays
Paralogous to G4226, G4227, G4228, G4229, G4230, G4232;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2345
G4232
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4226, G4227,






G4228, G4229, G4230, G4231; orthologous to G207, G227, G230,






G242, G4218, G4219, G4220, G4221, G4222, G4223, G4224,






G4225, G4234, G4235, G4236, G4237, G4238


2346
G4232
PRT
Z. mays
Paralogous to G4226, G4227, G4228, G4229, G4230, G4231;






Orthologous to G207, G227, G230, G242, G4218, G4219, G4220,






G4221, G4222, G4223, G4224, G4225, G4234, G4235, G4236,






G4237, G4238


2347
G4234
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4235, G4236,






G4237, G4238; orthologous to G207, G227, G230, G242, G4218,






G4219, G4220, G4221, G4222, G4223, G4224, G4225, G4226,






G4227, G4228, G4229, G4230, G4231, G4232


2348
G4234
PRT
O. sativa
Paralogous to G4235, G4236, G4237, G4238; Orthologous to G207,






G227, G230, G242, G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232


2349
G4235
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4234, G4236,






G4237, G4238; orthologous to G207, G227, G230, G242, G4218,






G4219, G4220, G4221, G4222, G4223, G4224, G4225, G4226,






G4227, G4228, G4229, G4230, G4231, G4232


2350
G4235
PRT
O. sativa
Paralogous to G4234, G4236, G4237, G4238; Orthologous to G207,






G227, G230, G242, G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232


2351
G4236
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4234, G4235,






G4237, G4238; orthologous to G207, G227, G230, G242, G4218,






G4219, G4220, G4221, G4222, G4223, G4224, G4225, G4226,






G4227, G4228, G4229, G4230, G4231, G4232


2352
G4236
PRT
O. sativa
Paralogous to G4234, G4235, G4237, G4238; Orthologous to G207,






G227, G230, G242, G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232


2353
G4237
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4234, G4235,






G4236, G4238; orthologous to G207, G227, G230, G242, G4218,






G4219, G4220, G4221, G4222, G4223, G4224, G4225, G4226,






G4227, G4228, G4229, G4230, G4231, G4232


2354
G4237
PRT
O. sativa
Paralogous to G4234, G4235, G4236, G4238; Orthologous to G207,






G227, G230, G242, G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232


2355
G4238
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4234, G4235,






G4236, G4237; orthologous to G207, G227, G230, G242, G4218,






G4219, G4220, G4221, G4222, G4223, G4224, G4225, G4226,






G4227, G4228, G4229, G4230, G4231, G4232


2356
G4238
PRT
O. sativa
Paralogous to G4234, G4235, G4236, G4237; Orthologous to G207,






G227, G230, G242, G4218, G4219, G4220, G4221, G4222, G4223,






G4224, G4225, G4226, G4227, G4228, G4229, G4230, G4231,






G4232


2357
G4240
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G1435, G2741,






G4241, G4243, G4244, G4245


2358
G4240
PRT
Z. mays
Orthologous to G1435, G2741, G4241, G4243, G4244, G4245


2359
G4241
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1435, G2741,






G4240, G4243, G4244, G4245


2360
G4241
PRT
O. sativa
Orthologous to G1435, G2741, G4240, G4243, G4244, G4245


2361
G4243
DNA
G. max
Predicted polypeptide sequence is paralogous to G4244; orthologous






to G1435, G2741, G4240, G4241, G4245


2362
G4243
PRT
G. max
Paralogous to G4244; Orthologous to G1435, G2741, G4240, G4241,






G4245


2363
G4244
DNA
G. max
Predicted polypeptide sequence is paralogous to G4243; orthologous






to G1435, G2741, G4240, G4241, G4245


2364
G4244
PRT
G. max
Paralogous to G4243; Orthologous to G1435, G2741, G4240, G4241,






G4245


2365
G4245
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1435, G2741,






G4240, G4241, G4243, G4244


2366
G4245
PRT
S. lycopersicum
Orthologous to G1435, G2741, G4240, G4241, G4243, G4244


2367
G425
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2545, G426, G427


2368
G425
PRT
A. thaliana
Paralogous to G2545, G426, G427


2369
G4253
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4254, G4255;






orthologous to G3074


2370
G4253
PRT
Z. mays
Paralogous to G4254, G4255; Orthologous to G3074


2371
G4254
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4253, G4255;






orthologous to G3074


2372
G4254
PRT
Z. mays
Paralogous to G4253, G4255; Orthologous to G3074


2373
G4255
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4253, G4254;






orthologous to G3074


2374
G4255
PRT
Z. mays
Paralogous to G4253, G4254; Orthologous to G3074


2375
G4256
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3551, G3552,






G4257; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3553, G3554, G3555, G3867, G3892, G3893,






G3894, G3896


2376
G4256
PRT
Z. mays
Paralogous to G3551, G3552, G4257; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3553, G3554,






G3555, G3867, G3892, G3893, G3894, G3896


2377
G4257
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3551, G3552,






G4256; orthologous to G489, G714, G3542, G3544, G3545, G3547,






G3549, G3550, G3553, G3554, G3555, G3867, G3892, G3893,






G3894, G3896


2378
G4257
PRT
Z. mays
Paralogous to G3551, G3552, G4256; Orthologous to G489, G714,






G3542, G3544, G3545, G3547, G3549, G3550, G3553, G3554,






G3555, G3867, G3892, G3893, G3894, G3896


2379
G4259
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3889; orthologous






to G1646, G715, G3883, G3884, G3885, G3886, G3543


2380
G4259
PRT
Z. mays
Paralogous to G3889; Orthologous to G1646, G715, G3883, G3884,






G3885, G3886, G3543


2381
G4261
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G926, G2632,






G3924


2382
G4261
PRT
Z. mays
Orthologous to G926, G2632, G3924


2383
G4267
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4268; orthologous






to G2344, G929


2384
G4267
PRT
Z. mays
Paralogous to G4268; Orthologous to G2344, G929


2385
G4268
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4267; orthologous






to G2344, G929


2386
G4268
PRT
Z. mays
Paralogous to G4267; Orthologous to G2344, G929


2387
G427
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2545, G425, G426


2388
G427
PRT
A. thaliana
Paralogous to G2545, G425, G426


2389
G4272
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3436, G3437, G3866, G3876, G4276; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


2390
G4272
PRT
Z. mays
Paralogous to G3434, G3435, G3436, G3437, G3866, G3876, G4276;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


2391
G4276
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3434, G3435,






G3436, G3437, G3866, G3876, G4272; orthologous to G1364,






G2345, G481, G482, G485, G3394, G3395, G3396, G3397, G3398,






G3429, G3470, G3471, G3472, G3473, G3474, G3475, G3476,






G3478, G3868, G3870, G3873, G3874, G3875, G3938


2392
G4276
PRT
Z. mays
Paralogous to G3434, G3435, G3436, G3437, G3866, G3876, G4272;






Orthologous to G1364, G2345, G481, G482, G485, G3394, G3395,






G3396, G3397, G3398, G3429, G3470, G3471, G3472, G3473,






G3474, G3475, G3476, G3478, G3868, G3870, G3873, G3874,






G3875, G3938


2393
G4283
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4284; orthologous






to G1750, G1421, G4079, G4080, G440, G864, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


2394
G4283
PRT
Z. mays
Paralogous to G4284; Orthologous to G1750, G1421, G4079, G4080,






G440, G864, G4285, G4286, G4287, G4288, G4289, G4290, G4291,






G4292, G4293


2395
G4284
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4283; orthologous






to G1750, G1421, G4079, G4080, G440, G864, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


2396
G4284
PRT
Z. mays
Paralogous to G4283; Orthologous to G1750, G1421, G4079, G4080,






G440, G864, G4285, G4286, G4287, G4288, G4289, G4290, G4291,






G4292, G4293


2397
G4285
DNA
G. max
Predicted polypeptide sequence is paralogous to G4286, G4287;






orthologous to G1750, G1421, G4079, G4080, G440, G864, G4283,






G4284, G4288, G4289, G4290, G4291, G4292, G4293


2398
G4285
PRT
G. max
Paralogous to G4286, G4287; Orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4288, G4289, G4290, G4291,






G4292, G4293


2399
G4286
DNA
G. max
Predicted polypeptide sequence is paralogous to G4285, G4287;






orthologous to G1750, G1421, G4079, G4080, G440, G864, G4283,






G4284, G4288, G4289, G4290, G4291, G4292, G4293


2400
G4286
PRT
G. max
Paralogous to G4285, G4287; Orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4288, G4289, G4290, G4291,






G4292, G4293


2401
G4287
DNA
G. max
Predicted polypeptide sequence is paralogous to G4285, G4286;






orthologous to G1750, G1421, G4079, G4080, G440, G864, G4283,






G4284, G4288, G4289, G4290, G4291, G4292, G4293


2402
G4287
PRT
G. max
Paralogous to G4285, G4286; Orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4288, G4289, G4290, G4291,






G4292, G4293


2403
G4288
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4289, G4290,






G4291, G4292, G4293; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2404
G4288
PRT
O. sativa
Paralogous to G4289, G4290, G4291, G4292, G4293; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2405
G4289
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4288, G4290,






G4291, G4292, G4293; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2406
G4289
PRT
O. sativa
Paralogous to G4288, G4290, G4291, G4292, G4293; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2407
G4290
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4288, G4289,






G4291, G4292, G4293; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2408
G4290
PRT
O. sativa
Paralogous to G4288, G4289, G4291, G4292, G4293; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2409
G4291
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4288, G4289,






G4290, G4292, G4293; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2410
G4291
PRT
O. sativa
Paralogous to G4288, G4289, G4290, G4292, G4293; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2411
G4292
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4288, G4289,






G4290, G4291, G4293; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2412
G4292
PRT
O. sativa
Paralogous to G4288, G4289, G4290, G4291, G4293; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2413
G4293
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4288, G4289,






G4290, G4291, G4292; orthologous to G1750, G1421, G4079,






G4080, G440, G864, G4283, G4284, G4285, G4286, G4287


2414
G4293
PRT
O. sativa
Paralogous to G4288, G4289, G4290, G4291, G4292; Orthologous to






G1750, G1421, G4079, G4080, G440, G864, G4283, G4284, G4285,






G4286, G4287


2415
G4294
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1387, G2583,






G975


2416
G4294
PRT
O. sativa
Orthologous to G1387, G2583, G975


2417
G4306
DNA
G. max
Predicted polypeptide sequence is orthologous to G233, G241,






G4307, G4308, G4309, G4310


2418
G4306
PRT
G. max
Orthologous to G233, G241, G4307, G4308, G4309, G4310


2419
G4307
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G233, G241,






G4306, G4308, G4309, G4310


2420
G4307
PRT
S. lycopersicum
Orthologous to G233, G241, G4306, G4308, G4309, G4310


2421
G4308
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G233, G241,






G4306, G4307, G4309, G4310


2422
G4308
PRT
O. sativa
Orthologous to G233, G241, G4306, G4307, G4309, G4310


2423
G4309
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4310; orthologous






to G233, G241, G4306, G4307, G4308


2424
G4309
PRT
Z. mays
Paralogous to G4310; Orthologous to G233, G241, G4306, G4307,






G4308


2425
G4310
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G4309; orthologous






to G233, G241, G4306, G4307, G4308


2426
G4310
PRT
Z. mays
Paralogous to G4309; Orthologous to G233, G241, G4306, G4307,






G4308


2427
G4311
DNA
G. max
Predicted polypeptide sequence is paralogous to G4312; orthologous






to G3752, G3753, G3751, G793, G591, G3750, G4313


2428
G4311
PRT
G. max
Paralogous to G4312; Orthologous to G3752, G3753, G3751, G793,






G591, G3750, G4313


2429
G4312
DNA
G. max
Predicted polypeptide sequence is paralogous to G4311; orthologous






to G3752, G3753, G3751, G793, G591, G3750, G4313


2430
G4312
PRT
G. max
Paralogous to G4311; Orthologous to G3752, G3753, G3751, G793,






G591, G3750, G4313


2431
G4313
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3753; orthologous






to G3752, G3751, G793, G591, G3750, G4311, G4312


2432
G4313
PRT
Z. mays
Paralogous to G3753; Orthologous to G3752, G3751, G793, G591,






G3750, G4311, G4312


2433
G4328
DNA
S. tuberosum
Predicted polypeptide sequence is orthologous to G1791, G1792,






G1795, G30, G3380, G3381, G3383, G3515, G3516, G3517, G3518,






G3519, G3520, G3735, G3736, G3737, G3794, G3739, G3929,






G4329, G4330


2434
G4328
PRT
S. tuberosum
Orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,






G3515, G3516, G3517, G3518, G3519, G3520, G3735, G3736,






G3737, G3794, G3739, G3929, G4329, G4330


2435
G4329
DNA
Petunia x
Predicted polypeptide sequence is orthologous to G1791, G1792,





hybrida
G1795, G30, G3380, G3381, G3383, G3515, G3516, G3517, G3518,






G3519, G3520, G3735, G3736, G3737, G3794, G3739, G3929,






G4328, G4330


2436
G4329
PRT
Petunia x
Orthologous to G1791, G1792, G1795, G30, G3380, G3381, G3383,





hybrida
G3515, G3516, G3517, G3518, G3519, G3520, G3735, G3736,






G3737, G3794, G3739, G3929, G4328, G4330


2437
G4330
DNA
Populus
Predicted polypeptide sequence is orthologous to G1791, G1792,





trichocarpa x
G1795, G30, G3380, G3381, G3383, G3515, G3516, G3517, G3518,





Populus
G3519, G3520, G3735, G3736, G3737, G3794, G3739, G3929,





nigra
G4328, G4329


2438
G4330
PRT
Populus
Orthologousto G1791, G1792, G1795, G30, G3380, G3381, G3383,





trichocarpa x
G3515, G3516, G3517, G3518, G3519, G3520, G3735, G3736,





Populus
G3737, G3794, G3739, G3929, G4328, G4329





nigra



2439
G4369
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3490, G4370;






orthologous to G1543, G3510, G3524, G4371


2440
G4369
PRT
Z. mays
Paralogous to G3490, G4370; Orthologous to G1543, G3510, G3524,






G4371


2441
G4370
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3490, G4369;






orthologous to G1543, G3510, G3524, G4371


2442
G4370
PRT
Z. mays
Paralogous to G3490, G4369; Orthologous to G1543, G3510, G3524,






G4371


2443
G4371
DNA
G. max
Predicted polypeptide sequence is paralogous to G3524; orthologous






to G1543, G3510, G3490, G4369, G4370


2444
G4371
PRT
G. max
Paralogous to G3524; Orthologous to G1543, G3510, G3490, G4369,






G4370


2445
G438
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1548, G390, G391,






G392


2446
G438
PRT
A. thaliana
Paralogous to G1548, G390, G391, G392


2447
G448
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G450, G455, G456


2448
G448
PRT
A. thaliana
Paralogous to G450, G455, G456


2449
G455
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G448, G450, G456


2450
G455
PRT
A. thaliana
Paralogous to G448, G450, G456


2451
G456
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G448, G450, G455


2452
G456
PRT
A. thaliana
Paralogous to G448, G450, G455


2453
G4570
DNA
G. max
Predicted polypeptide sequence is orthologous to G2157


2454
G4570
PRT
G. max
Orthologous to G2157


2455
G46
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1419, G43, G1004,






G29; orthologous to G3849


2456
G46
PRT
A. thaliana
Paralogous to G1419, G43, G1004, G29; Orthologous to G3849


2457
G4626
DNA
S. lycopersicum
Predicted polypeptide sequence is paralogous to G3841, G3843,






G3852; orthologous to G22, G1006, G28, G3430, G3659, G3660,






G3661, G3717, G3718, G3844, G3845, G3846, G3848, G3856,






G3857, G3858, G3864, G3865, G5171


2458
G4626
PRT
S. lycopersicum
Paralogous to G3841, G3843, G3852; Orthologous to G22, G1006,






G28, G3430, G3659, G3660, G3661, G3717, G3718, G3844, G3845,






G3846, G3848, G3856, G3857, G3858, G3864, G3865, G5171


2459
G4627
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4630, G5158;






orthologous to G1809, G557, G4631, G4632


2460
G4627
PRT
O. sativa
Paralogous to G4630, G5158; Orthologous to G1809, G557, G4631,






G4632


2461
G4628
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1518, G4629,






G4633, G4635


2462
G4628
PRT
O. sativa
Orthologous to G1518, G4629, G4633, G4635


2463
G4629
DNA
Pisum
Predicted polypeptide sequence is orthologous to G1518, G4628,





sativum
G4633, G4635


2464
G4629
PRT
Pisum
Orthologous to G1518, G4628, G4633, G4635





sativum



2465
G4630
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4627, G5158;






orthologous to G1809, G557, G4631, G4632


2466
G4630
PRT
O. sativa
Paralogous to G4627, G5158; Orthologous to G1809, G557, G4631,






G4632


2467
G4631
DNA
G. max
Predicted polypeptide sequence is orthologous to G1809, G557,






G4627, G4630, G4632, G5158


2468
G4631
PRT
G. max
Orthologous to G1809, G557, G4627, G4630, G4632, G5158


2469
G4632
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G1809, G557,






G4627, G4630, G4631, G5158


2470
G4632
PRT
Z. mays
Orthologous to G1809, G557, G4627, G4630, G4631, G5158


2471
G4633
DNA
G. max
Predicted polypeptide sequence is orthologous to G1518, G4628,






G4629, G4635


2472
G4633
PRT
G. max
Orthologous to G1518, G4628, G4629, G4635


2473
G4635
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1518, G4628,






G4629, G4633


2474
G4635
PRT
S. lycopersicum
Orthologous to G1518, G4628, G4629, G4633


2475
G4637
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3532,






G3533, G3534, G4638, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


2476
G4637
PRT
Z. mays
Paralogous to G3531, G3532, G3533, G3534, G4638, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


2477
G4638
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3532,






G3533, G3534, G4637, G4640; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


2478
G4638
PRT
Z. mays
Paralogous to G3531, G3532, G3533, G3534, G4637, G4640;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


2479
G4639
DNA
G. max
Predicted polypeptide sequence is paralogous to G3529, G3527,






G3528; orthologous to G197, G255, G664, G3503, G3504, G3505,






G3506, G3507, G3508, G3509, G3531, G3532, G3533, G3534,






G4637, G4638, G4640


2480
G4639
PRT
G. max
Paralogous to G3529, G3527, G3528; Orthologous to G197, G255,






G664, G3503, G3504, G3505, G3506, G3507, G3508, G3509,






G3531, G3532, G3533, G3534, G4637, G4638, G4640


2481
G464
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G463


2482
G464
PRT
A. thaliana
Paralogous to G463


2483
G4640
DNA
Z. mays
Predicted polypeptide sequence is paralogous to G3531, G3532,






G3533, G3534, G4637, G4638; orthologous to G197, G255, G664,






G3503, G3504, G3505, G3506, G3507, G3508, G3509, G3529,






G3527, G3528, G4639


2484
G4640
PRT
Z. mays
Paralogous to G3531, G3532, G3533, G3534, G4637, G4638;






Orthologous to G197, G255, G664, G3503, G3504, G3505, G3506,






G3507, G3508, G3509, G3529, G3527, G3528, G4639


2485
G472
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1553, G716


2486
G472
PRT
A. thaliana
Paralogous to G1553, G716


2487
G502
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G501, G519, G767


2488
G502
PRT
A. thaliana
Paralogous to G501, G519, G767


2489
G514
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G523, G525, G764


2490
G514
PRT
A. thaliana
Paralogous to G523, G525, G764


2491
G515
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2053, G516, G517


2492
G515
PRT
A. thaliana
Paralogous to G2053, G516, G517


2493
G5158
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G4627, G4630;






orthologous to G1809, G557, G4631, G4632


2494
G5158
PRT
O. sativa
Paralogous to G4627, G4630; Orthologous to G1809, G557, G4631,






G4632


2495
G5159
DNA
O. sativa
Predicted polypeptide sequence is orthologous to G1482, G1888


2496
G5159
PRT
O. sativa
Orthologous to G1482, G1888


2497
G516
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2053, G515, G517


2498
G516
PRT
A. thaliana
Paralogous to G2053, G515, G517


2499
G517
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2053, G515, G516


2500
G517
PRT
A. thaliana
Paralogous to G2053, G515, G516


2501
G5170
DNA
S. lycopersicum
Predicted polypeptide sequence is orthologous to G1266, G5184,






G5185, G5186


2502
G5170
PRT
S. lycopersicum
Orthologous to G1266, G5184, G5185, G5186


2503
G5171
DNA
O. sativa
Predicted polypeptide sequence is paralogous to G3430, G3848;






orthologous to G22, G1006, G28, G3659, G3660, G3661, G3717,






G3718, G3841, G3843, G3844, G3845, G3846, G3852, G3856,






G3857, G3858, G3864, G3865, G4626


2504
G5171
PRT
O. sativa
Paralogous to G3430, G3848; Orthologous to G22, G1006, G28,






G3659, G3660, G3661, G3717, G3718, G3841, G3843, G3844,






G3845, G3846, G3852, G3856, G3857, G3858, G3864, G3865,






G4626


2505
G5184
DNA
G. max
Predicted polypeptide sequence is paralogous to G5186; orthologous






to G1266, G5185, G5170


2506
G5184
PRT
G. max
Paralogous to G5186; Orthologous to G1266, G5185, G5170


2507
G5185
DNA
Z. mays
Predicted polypeptide sequence is orthologous to G1266, G5184,






G5186, G5170


2508
G5185
PRT
Z. mays
Orthologous to G1266, G5184, G5186, G5170


2509
G5186
DNA
G. max
Predicted polypeptide sequence is paralogous to G5184; orthologous






to G1266, G5185, G5170


2510
G5186
PRT
G. max
Paralogous to G5184; Orthologous to G1266, G5185, G5170


2511
G521
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2887


2512
G521
PRT
A. thaliana
Paralogous to G2887


2513
G523
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G514, G525, G764


2514
G523
PRT
A. thaliana
Paralogous to G514, G525, G764


2515
G524
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G763


2516
G524
PRT
A. thaliana
Paralogous to G763


2517
G528
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G529, G530, G531,






G532, G533, G534, G535, G536, G537


2518
G528
PRT
A. thaliana
Paralogous to G529, G530, G531, G532, G533, G534, G535, G536,






G537


2519
G533
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G532, G534, G535, G536, G537


2520
G533
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G532, G534, G535, G536,






G537


2521
G534
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G532, G533, G535, G536, G537


2522
G534
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G532, G533, G535, G536,






G537


2523
G535
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G532, G533, G534, G536, G537


2524
G535
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G532, G533, G534, G536,






G537


2525
G536
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G532, G533, G534, G535, G537


2526
G536
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G532, G533, G534, G535,






G537


2527
G537
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G528, G529, G530,






G531, G532, G533, G534, G535, G536


2528
G537
PRT
A. thaliana
Paralogous to G528, G529, G530, G531, G532, G533, G534, G535,






G536


2529
G545
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G350, G351


2530
G545
PRT
A. thaliana
Paralogous to G350, G351


2531
G554
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G555, G556, G558, G578, G629


2532
G554
PRT
A. thaliana
Paralogous to G1198, G1806, G555, G556, G558, G578, G629


2533
G555
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G554, G556, G558, G578, G629


2534
G555
PRT
A. thaliana
Paralogous to G1198, G1806, G554, G556, G558, G578, G629


2535
G557
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1809; orthologous






to G4627, G4630, G4631, G4632, G5158


2536
G557
PRT
A. thaliana
Paralogous to G1809; Orthologous to G4627, G4630, G4631, G4632,






G5158


2537
G561
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G562


2538
G561
PRT
A. thaliana
Paralogous to G562


2539
G578
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G554, G555, G556, G558, G629


2540
G578
PRT
A. thaliana
Paralogous to G1198, G1806, G554, G555, G556, G558, G629


2541
G584
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1136


2542
G584
PRT
A. thaliana
Paralogous to G1136


2543
G589
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1061, G2791;






orthologous to G3748, G3749, G3774, G3760


2544
G589
PRT
A. thaliana
Paralogous to G1061, G2791; Orthologous to G3748, G3749, G3774,






G3760


2545
G593
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G790


2546
G593
PRT
A. thaliana
Paralogous to G790


2547
G602
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1065


2548
G602
PRT
A. thaliana
Paralogous to G1065


2549
G605
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1944


2550
G605
PRT
A. thaliana
Paralogous to G1944


2551
G617
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2650


2552
G617
PRT
A. thaliana
Paralogous to G2650


2553
G618
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2057


2554
G618
PRT
A. thaliana
Paralogous to G2057


2555
G620
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1821; orthologous






to G3839, G3937, G3939


2556
G620
PRT
A. thaliana
Paralogous to G1821; Orthologous to G3839, G3937, G3939


2557
G627
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G149, G1011, G154,






G1797, G1798; orthologous to G4061, G4062, G4063, G4064,






G4065, G4066, G4067


2558
G627
PRT
A. thaliana
Paralogous to G149, G1011, G154, G1797, G1798; Orthologous to






G4061, G4062, G4063, G4064, G4065, G4066, G4067


2559
G629
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1198, G1806,






G554, G555, G556, G558, G578


2560
G629
PRT
A. thaliana
Paralogous to G1198, G1806, G554, G555, G556, G558, G578


2561
G632
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1559


2562
G632
PRT
A. thaliana
Paralogous to G1559


2563
G652
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1335


2564
G652
PRT
A. thaliana
Paralogous to G1335


2565
G654
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G653


2566
G654
PRT
A. thaliana
Paralogous to G653


2567
G668
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G256, G666, G932;






orthologous to G3384, G3385, G3386, G3500, G3501, G3502,






G3537, G3538, G3539, G3540, G3541


2568
G668
PRT
A. thaliana
Paralogous to G256, G666, G932; Orthologous to G3384, G3385,






G3386, G3500, G3501, G3502, G3537, G3538, G3539, G3540,






G3541


2569
G670
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1319


2570
G670
PRT
A. thaliana
Paralogous to G1319


2571
G678
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G229


2572
G678
PRT
A. thaliana
Paralogous to G229


2573
G713
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G413


2574
G713
PRT
A. thaliana
Paralogous to G413


2575
G716
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1553, G472


2576
G716
PRT
A. thaliana
Paralogous to G1553, G472


2577
G729
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1040, G3034,






G730


2578
G729
PRT
A. thaliana
Paralogous to G1040, G3034, G730


2579
G760
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G3041


2580
G760
PRT
A. thaliana
Paralogous to G3041


2581
G761
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1354, G1355,






G1453, G1766, G2534, G522


2582
G761
PRT
A. thaliana
Paralogous to G1354, G1355, G1453, G1766, G2534, G522


2583
G767
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G501, G502, G519


2584
G767
PRT
A. thaliana
Paralogous to G501, G502, G519


2585
G791
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G792


2586
G791
PRT
A. thaliana
Paralogous to G792


2587
G807
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G810; orthologous to






G3491, G3494, G3495, G3512


2588
G807
PRT
A. thaliana
Paralogous to G810; Orthologous to G3491, G3494, G3495, G3512


2589
G820
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G268, G2876


2590
G820
PRT
A. thaliana
Paralogous to G268, G2876


2591
G833
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G274


2592
G833
PRT
A. thaliana
Paralogous to G274


2593
G852
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1768, G2633,






G2697, G313; orthologous to G3815, G3825


2594
G852
PRT
A. thaliana
Paralogous to G1768, G2633, G2697, G313; Orthologous to G3815,






G3825


2595
G859
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G157, G1759,






G1842, G1843, G1844


2596
G859
PRT
A. thaliana
Paralogous to G157, G1759, G1842, G1843, G1844


2597
G860
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G152, G153, G1760;






orthologous to G3479, G3480, G3481, G3482, G3483, G3484,






G3485, G3487, G3488, G3489, G3980, G3981, G3982


2598
G860
PRT
A. thaliana
Paralogous to G152, G153, G1760; Orthologous to G3479, G3480,






G3481, G3482, G3483, G3484, G3485, G3487, G3488, G3489,






G3980, G3981, G3982


2599
G861
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1140; orthologous






to G3984, G3985, G3986, G3987, G3988, G3989, G3990, G3991,






G3992, G3998, G3999, G4060


2600
G861
PRT
A. thaliana
Paralogous to G1140; Orthologous to G3984, G3985, G3986, G3987,






G3988, G3989, G3990, G3991, G3992, G3998, G3999, G4060


2601
G864
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1750, G1421,






G440; orthologous to G4079, G4080, G4283, G4284, G4285, G4286,






G4287, G4288, G4289, G4290, G4291, G4292, G4293


2602
G864
PRT
A. thaliana
Paralogous to G1750, G1421, G440; Orthologous to G4079, G4080,






G4283, G4284, G4285, G4286, G4287, G4288, G4289, G4290,






G4291, G4292, G4293


2603
G867
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1930, G9, G993;






orthologous to G3388, G3389, G3390, G3391, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


2604
G867
PRT
A. thaliana
Paralogous to G1930, G9, G993; Orthologous to G3388, G3389,






G3390, G3391, G3432, G3433, G3451, G3452, G3453, G3454,






G3455


2605
G899
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1480, G897


2606
G899
PRT
A. thaliana
Paralogous to G1480, G897


2607
G9
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1930, G867, G993;






orthologous to G3388, G3389, G3390, G3391, G3432, G3433,






G3451, G3452, G3453, G3454, G3455


2608
G9
PRT
A. thaliana
Paralogous to G1930, G867, G993; Orthologous to G3388, G3389,






G3390, G3391, G3432, G3433, G3451, G3452, G3453, G3454,






G3455


2609
G903
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2831


2610
G903
PRT
A. thaliana
Paralogous to G2831


2611
G911
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1113


2612
G911
PRT
A. thaliana
Paralogous to G1113


2613
G912
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G40, G2107, G2513,






G41, G42; orthologous to G3362, G3364, G3365, G3366, G3367,






G3368, G3370, G3371, G3372, G3373, G3374, G3375, G3376,






G3377, G3378, G3379, G3438, G3439, G3440, G3441, G3442,






G3369, G3497, G3498, G3499, G3443, G3463, G3464, G3465,






G3466, G3467, G3468, G3469


2614
G912
PRT
A. thaliana
Paralogous to G40, G2107, G2513, G41, G42; Orthologous to






G3362, G3364, G3365, G3366, G3367, G3368, G3370, G3371,






G3372, G3373, G3374, G3375, G3376, G3377, G3378, G3379,






G3438, G3439, G3440, G3441, G3442, G3369, G3497, G3498,






G3499, G3443, G3463, G3464, G3465, G3466, G3467, G3468,






G3469


2615
G913
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2514, G976,






G1753


2616
G913
PRT
A. thaliana
Paralogous to G2514, G976, G1753


2617
G925
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2371


2618
G925
PRT
A. thaliana
Paralogous to G2371


2619
G926
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2632; orthologous






to G3924, G4261


2620
G926
PRT
A. thaliana
Paralogous to G2632; Orthologous to G3924, G4261


2621
G932
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G256, G666, G668;






orthologous to G3384, G3385, G3386, G3500, G3501, G3502,






G3537, G3538, G3539, G3540, G3541


2622
G932
PRT
A. thaliana
Paralogous to G256, G666, G668; Orthologous to G3384, G3385,






G3386, G3500, G3501, G3502, G3537, G3538, G3539, G3540,






G3541


2623
G940
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G938, G941


2624
G940
PRT
A. thaliana
Paralogous to G938, G941


2625
G957
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G2535, G961


2626
G957
PRT
A. thaliana
Paralogous to G2535, G961


2627
G960
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1426, G1455,






G513


2628
G960
PRT
A. thaliana
Paralogous to G1426, G1455, G513


2629
G964
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G398, G399


2630
G964
PRT
A. thaliana
Paralogous to G398, G399


2631
G986
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G881


2632
G986
PRT
A. thaliana
Paralogous to G881


2633
G990
DNA
A. thaliana
Predicted polypeptide sequence is paralogous to G1451


2634
G990
PRT
A. thaliana
Paralogous to G1451









Example IX
Introduction of Polynucleotides into Dicotyledonous and Monocotyledonous Plants
Transcription factor sequences listed in the Sequence Listing recombined into expression vectors, such as pMEN20 or pMEN65, may be transformed into a plant for the purpose of modifying plant traits. It is now routine to produce transgenic plants using most dicot plants (see Weissbach and Weissbach, (1989); Gelvin et al. (1990); Herrera-Estrella et al. (1983); Bevan (1984); and Klee (1985)). Methods for analysis of traits are routine in the art and examples are disclosed above.
The cloning vectors of the invention may also be introduced into a variety of grasses (e.g., Switchgrass, Miscanthus, cane, or Miscanthus-cane hybrids), or cereal plants. Cereal plants such as, but not limited to, corn, wheat, rice, sorghum, or barley, may also be transformed with the present polynucleotide sequences in pMEN20 or pMEN65 expression vectors for the purpose of modifying plant traits. For example, pMEN020 may be modified to replace the NptII coding region with the BAR gene of Streptomyces hygroscopicus that confers resistance to phosphinothricin. The KpnI and BglII sites of the Bar gene are removed by site-directed mutagenesis with silent codon changes.
The cloning vector may be introduced into a variety of monocots by means well known in the art such as, for example, direct DNA transfer or Agrobacterium tumefaciens-mediated transformation. It is now routine to produce transgenic plants of most cereal crops (Vasil (1994)) such as corn, wheat, rice, sorghum (Cassas et al. (1993)), and barley (Wan and Lemeaux (1994)). DNA transfer methods such as the microprojectile can be used for corn (Fromm et al. (1990); Gordon-Kamm et al. (1990); Ishida (1990)), wheat (Vasil et al. (1992); Vasil et al. (1993b); Weeks et al. (1993)), and rice (Christou (1991); Hiei et al. (1994); Aldemita and Hodges (1996); and Hiei et al. (1997)). For most cereal plants, embryogenic cells derived from immature scutellum tissues are the preferred cellular targets for transformation (Hiei et al. (1997); Vasil (1994)).
Vectors according to the present invention may be transformed into corn embryogenic cells derived from immature scutellar tissue by using microprojectile bombardment, with the A188XB73 genotype as the preferred genotype (Fromm et al. (1990); Gordon-Kamm et al. (1990)). After microprojectile bombardment the tissues are selected on phosphinothricin to identify the transgenic embryogenic cells (Gordon-Kamm et al. (1990)). Transgenic plants are regenerated by standard corn regeneration techniques (Fromm et al. (1990); Gordon-Kamm et al. (1990)).
The vectors prepared as described above can also be used to produce transgenic wheat and rice plants (Christou (1991); Hiei et al. (1994); Aldemita and Hodges (1996); and Hiei et al. (1997)) that coordinately express genes of interest by following standard transformation protocols known to those skilled in the art for rice and wheat (Vasil et al. (1992); Vasil et al. (1993); and Weeks et al. (1993)), where the bar gene is used as the selectable marker.
Example X
Genes that Confer Significant Improvements to Diverse Plant Species
The function of specific orthologs of the sequences of the invention may be further characterized and incorporated into crop plants. The ectopic overexpression of these orthologs may be regulated using constitutive, inducible, or tissue specific regulatory elements. Genes that have been examined and have been shown to modify plant traits (including increasing lycopene, soluble solids and disease tolerance) encode orthologs of the transcription factor polypeptides found in the Sequence Listing, Table 7 or Table 8. In addition to these sequences, it is expected that related polynucleotide sequences encoding polypeptides found in the Sequence Listing can also induce altered traits, including increasing lycopene, soluble solids and disease tolerance, when transformed into a considerable variety of plants of different species, and including dicots and monocots. The polynucleotide and polypeptide sequences derived from monocots (e.g., the rice sequences) may be used to transform both monocot and dicot plants, and those derived from dicots (e.g., the Arabidopsis and soy genes) may be used to transform either group, although it is expected that some of these sequences will function best if the gene is transformed into a plant from the same group as that from which the sequence is derived.
Transgenic plants are subjected to assays to measure plant volume, lycopene, soluble solids, disease tolerance, and fruit set according to the methods disclosed in the above Examples.
These experiments demonstrate that a significant number the transcription factor polypeptide sequences of the invention can be identified and shown to increased volume, lycopene, soluble solids and disease tolerance. It is expected that the same methods may be applied to identify and eventually make use of other members of the clades of the present transcription factor polypeptides, with the transcription factor polypeptides deriving from a diverse range of species.
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All publications and patent applications mentioned in this specification are herein incorporated by reference to the same extent as if each individual publication or patent application was specifically and individually indicated to be incorporated by reference.
The present invention is not limited by the specific embodiments described herein. The invention now being fully described, it will be apparent to one of ordinary skill in the art that many changes and modifications can be made thereto without departing from the spirit or scope of the claims. Modifications that become apparent from the foregoing description and accompanying figures fall within the scope of the following claims.

## Claims

1. A transformed plant transformed with an expression vector comprising a recombinant nucleic acid sequence encoding a polypeptide, wherein the polypeptide has at least 95% amino acid identity to SEQ ID NO: 1232, and wherein the transformed plant has greater yield as compared to a control plant that has not been transformed with said expression vector.

2. The transformed plant of claim 1, wherein the polypeptide has at least 98% amino acid identity to SEQ ID NO: 1232.

3. A recombinant plant host cell comprised within the transformed plant of claim 1.

4. A transgenic seed produced by the transformed plant of claim 1, wherein the transgenic seed comprises the expression vector.

5. The transformed plant of claim 1, wherein the transformed plant is a dicot.

6. The transformed plant of claim 1, wherein the polypeptide is SEQ ID NO: 1232.

7. A transformed tomato plant transformed with an expression vector comprising a recombinant nucleic acid sequence encoding a polypeptide, wherein the polypeptide has at least 95% amino acid identity to SEQ ID NO: 1232, and wherein the transformed tomato plant has greater yield, increased lycopene levels, or greater fruit weight as compared to a control plant that has not been transformed with said expression vector.

8. The transformed tomato plant of claim 7, wherein the transformed tomato plant has greater yield as compared to a control plant not transformed with said expression vector.

9. The transformed tomato plant of claim 7, wherein the transformed tomato plant has increased lycopene levels as compared to a control plant not transformed with said expression vector.

10. The transformed tomato plant of claim 7, wherein the transformed tomato plant has greater fruit weight as compared to a control plant not transformed with said expression vector.

11. The transformed tomato plant of claim 7, wherein the polypeptide has at least 98% amino acid identity to SEQ ID NO: 1232.

12. The transformed tomato plant of claim 7, wherein the polypeptide is SEQ ID NO: 1232.