# Patent

## Title
Therapeutic and diagnostic domain 1 β2GPI polypeptides and methods of using same

## Abstract

The present invention provides domain 1 β2GPI polypeptides, polynucleotides encoding these polypeptides, mimetics of these polypeptides, and methods using domain 1 β2GPI polypeptides and mimetics. Domain 1 of β2GPI has been shown to bind to anti-cardiolipin (β2GPI-dependent antiphospholipid) antibodies, which are associated with several pathologies, such as thrombosis and fetal loss. The domain 1 β2GPI polypeptides may be used to detect β2GPI-dependent antiphospholipid antibodies in a sample. The invention further provides methods of inducing tolerance using these domain 1 β2GPI polypeptides.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims the priority benefit of U.S. provisional patent application Ser. No. 60/088,656, filed Jun. 9, 1998 and U.S. provisional patent application Ser. No. 60/103,088, filed Oct. 5, 1998. The priority applications are hereby incorporated herein by reference in their entirety.


STATEMENT OF RIGHTS TO INVENTIONS MADE UNDER FEDERALLY SPONSORED RESEARCH
(Not applicable)
TECHNICAL FIELD
This invention relates to polypeptides and methods for diagnosing and treating antiphospholipid antibody-associated pathologies, particularly those pathologies associated with β2GPI-dependent antiphospholipid antibodies. More specifically, the invention relates to domain 1 β2GPI polypeptides, domain 1 β2GPI polypeptide mimetics, domain 1 β2GPI polynucleotides, and methods using the polypeptides, especially for detection and for use as toleragens.
BACKGROUND
Antiphospholipid (aPL) antibodies is the term generally given to describe autoantibodies that are associated with thrombosis, recurrent fetal loss and thrombocytopenia as the primary anti-phospholipid syndrome (APS) as well as autoimmune diseases such as systemic lupus erythematosus (SLE). Harris et al. (1983) Lancet 2:1211-1214; and Lockshin et al. (1985) N. Engl. J. Med. 313:152-156. APS may be primary, or secondary, meaning that it is associated with other conditions, primarily SLE. PHOSPHOLIPID-BINDING ANTIBODIES (Harris et al., eds., CRC Press, Boca Raton, Fla., 1991; McNeil et al. ADVANCES IN IMMUNOLOGY, Vol. 49, pp. 193-281 (Austen el al., eds., Academic Press, San Diego, Calif., 1991)). aPL antibodies include so-called anticardiolipin (aCL) autoantibodies, which are discussed below. aPL antibodies (including aCL antibodies) are detected in many conditions but only the β2GPI-dependent antiphospholipid antibodies found in association with autoimmune disease require the presence of the phospholipid binding serum protein, β2GPI. Vaarala et al. (1986) Clin. Immunol. Immunopathol. 41:8-15.
Approximately 30% of patients possessing persistent aPL antibodies have 1<suffered a thrombic event. The presence of aPL antibodies defines a group of patients within SLE who display a syndrome of clinical features consisting of one or more of thrombosis, thrombocytopenia (TCP), and fetal loss. The risk of this syndrome in SLE overall is around 25%; this risk increases to 40% in the presence of aPL antibodies and decreases to 15% in their absence. Because aPL antibodies were thought to be directed at phospholipids in plasma membranes, it has been postulated that they may exert direct pathogenic effects in vivo by interfering with hemostatic processes that take place on the phospholipid membranes of cells such as platelets or endothelium. In patients with APS, the fact that aPL (including aCL) antibodies appear to be the only risk factor present is further evidence that these antibodies have a direct pathogenic role. Induction of APS by passive transfer of mice with human aPL antibodies is the best evidence yet that aPL antibodies are directly pathogenic. Bakimer et al. (1992) J. Clin. Invest. 89:1558-1563; Blank et al. (I 991) Proc. Natl. Acad. Sci. 88:3069-3073. Estimates vary but in about 15% of all stroke patients, aPL antibodies are thought to be an important contributing factor.
The clear correlation between presence of these antibodies with a number of disorders compels their detection and measurement. However, measurement of aPL antibodies in the clinical environment is still an imperfect art and therefore presents significant problems. A commercially available set of standard antisera (APL Diagnostics, Inc., Louisville, Ky.) allow generation of a standard curve for comparison of assays performed in various laboratories. A great deal of inconsistency exists, however, between the results obtained at these laboratories regarding the exact GPL and MPL, the unit of measurement for IgG and IgM antiphospholipid antibodies, respectively, ratings for given sera and the levels of GPL and MPL that are categorized as high (80 or greater), medium (20-80), low (10-20) or normal (0-10). The available commercial kits vary greatly in the values assigned to the commercially available standards. Reber et al. (1995) Thrombosis and Haemostat. 73:444-452.
The exact nature of the antigenic specificity of aPL autoantibodies is controversial, and is reflected in the evolving nomenclatures used for these antibodies. At first these autoantibodies were thought to be directed against anionic phospholipids, hence the name “anticardiolipin antibodies”. Gharavi et al. (1987) Ann. Rheum. Dis. 46 m: 1-6. It then became apparent that β2GPI played an important role in the antigenic specificity of aPL (including aCL) antibodies. Vermylen et al (1992) J. Lab. Clin. Med. 120:10; McNeil et al. (1990) Proc. Natl. Acad Sci. USA 87:41204124. These observations indicate that these antibodies are more properly called “β2GPI-dependent antiphospholipid autoantibodies”, which is the term used in this specification.
The reports that β2GPI played a role, as a cofactor, in the binding of β2GPI-Us dependent antiphospholipid antibody coupled with some reports that β2GPI-dependent antiphospholipid antibodies could bind β2GPI itself has led to conflicting interpretations as to the nature of the antigenic site recognized by these antibodies. However, the role β2GPI played has remained unclear, and several explanations have been suggested. Some groups have concluded that β2GPI-dependent antiphospholipid antibodies recognize a complex antigen that includes both β2GPI and anionic phospholipid, whereas others have observed β2GPI-dependent antiphospholipid binding to β2GPI in the absence of phospholipid. McNeil et al. (1990) Proc. Natl. Acad Sci. USA 87:4120-4124; Galli et al. (1990) Lancet 335:1544; Roubey et al (1995) J. Immun. 154(2): 954-960; Arvieux et al. (1991) J. Immunol. Methods 143:223. A number of explanations have been offered to explain these differences. Galli et al. postulate that because β2GPI dependent antiphospholipid antibodies are low affinity antibodies to β2GPI they require engagement of both combining sites on a given IgG molecule by a multivalent solid phase antigen. Galli et al. (1990). They further argue that under certain conditions, for example gamma irradiation of microtiter wells, that sufficient β2GPI can be immobilized to allow for these low affinity antibodies to bind. Others argue that a cryptic epitope, recognized by β2GPI-dependent antiphospholipid antibodies, is generated when β2GPI binds to either gamma irradiated well or to wells coated with cardiolipin. Matsuura et al. (1994) J. Exp. Med. 179:457.
β2GPI is a 50 kilodalton plasma glycoprotein that displays several properties ° defining an anti-coagulant, such as inhibition of contact activation of the intrinsic coagulation pathway, platelet prothrombinase activity, and ADP-induced platelet activation. Roubey (1996) Arthritis Rheum. 39:1444; Valesinit et al. (1992) Automimmunity 14:105. The amino acid sequence of β2GPI has been determined. Lozier et al. (1984) Proc. Natl. Acad. Sci. USA 81:3640; Steinkasserer et al. (1991) Biochem. J. 277:387. β2GPI is composed of five homologous domains. Four of them are composed of approximately 60 amino acids that contain highly conserved cystines, prolines and tryptophans. Lozier et al. (1984) Proc. Natl. Acad Sci. USA 81:3640; Steinkasserer et al. (1991) Biochem. J. 277:387-391. This protein structural motif was first described in β2GPI and is characterized by its length, independent folding, and by a framework with the homologous location of four half-cystine residues involved in the formation of two internal disulfide bridges; two prolines; two phenylalanine, tyrosine or histidine residues; two glycines; and one leucine or valine.
These repeating motifs were designated as sushi structures because of their shape or are sometimes referred to as short consensus repeats. Reid et al. (1989) Immunol. Today 10:177; Ichinose et al. (1990) J. Biol. Chem. 265:13411-14. The fifth domain contains 82 amino acid residues and 6 half-cystines.
In addition to the above-discussed controversy surrounding the nature of the antigenic specificity of β2GPI-dependent antiphospholipid antibodies, there has been considerable controversy regarding the nature and location of epitopes recognized by β2GPI-dependent antiphospholipid antibodies in β2GPI. It has been suggested that the phospholipid-binding site of β2GPI is located in the fifth domain. Hunt et al. (1993) Proc. Natl. Acad. Sci. USA 90:2141. Hunt et al. also reported on the structural differences between an active form of β2GPI and an inactive form of β2GPI that lacked β2GPI-dependent antiphospholipid cofactor activity and concluded that the putative epitope for β2GPI-dependent antiphospholipid antibodies was most likely to be in the fifth domain of β2GPI. Hunt et al. (1994) J. Immunol. 152:653-659. Other groups have used recombinant β2GPI proteins to attempt to locate the antigenic site of 2GPI-dependent antiphospholipid antibodies. Two of these groups produced β2GPI mutant proteins from which various domains had been deleted in a baculovirus expression system. Both groups concluded that the epitope for β2GPI-dependent antiphospholipid antibodies was cryptic and that domain 4 may be dominantly involved in the exposure of the epitope. Igarashi et al. (1996) Blood 87:3262-3270; George et al. (1998) J. Immunol. 160:3917-3923. Another group expressed β2GPI mutant proteins from which various domains had been deleted in Escherichia coli and concluded that domain 5 contained epitopes recognized by β2GPI-dependent antiphospholipid antibodies. Yang et al. (1997) APLAR J. Rheumatol. 1:96-100.
There is a serious need for improved detection systems and toleragens for β2GPI-dependent antiphospholipid antibody-mediated conditions.
All references cited herein are incorporated by reference in their entirety.
DISCLOSURE OF THE INVENTION
The invention provides domain 1 β2GPI polypeptides, polynucleotides encoding these polypeptides, mimetics of domain 1 β2GPI polypeptides, compositions, and methods using these polypeptides, polynucleotides, and mimetics.
Accordingly, in one aspect, the invention provides polypeptides comprising a domain 1 β2GPI polypeptide, wherein the polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, wherein it is understood that the polypeptide does not consist of the amino acid sequence of intact β2GPI, as depicted in FIG. 1 (SEQ ID NO: I), and further does not consist of domains 1, 2, and 3 or domains 1, 2, 3 and 4 of β2GPI. In some embodiments, the polypeptide comprises fragments of domain 1, such as are shown in Table 1. In other embodiments, the polypeptide comprises a conformational epitope. In yet other embodiments, the polypeptide consists of domain 1.
In another aspect, the invention provides a polypeptide comprising a domain β2GPI polypeptide, wherein the polypeptide lacks a (detectable) T cell epitope, said T cell epitope capable of activating T cells in an individual having 2GPI dependent antiphospholipid antibodies.
The invention also provides conjugates, fusions, and/or polymeric forms of any of the domain 1 β2GPI polypeptide(s) (or polypeptides comprising β2GPI polypeptide(s)). In preferred embodiments, a domain 1 β2GPI polypeptide(s) (particularly those lacking a T cell epitope) is conjugated to an appropriate multi-valent platform molecule, which may be proteinaceous or non-proteinacecous.
In another aspect, the invention provides polynucleotides (including isolated naturally-occurring and non-naturally occurring polynucleotides) encoding any of the polypeptide embodiments of this invention. The polynucleotides may be isolated, in cloning or expression vectors, and/or in suitable host cells.
In another aspect, the invention provides mimetics of a domain 1 GPI polypeptide, said mimetics able to specifically bind to an antibody which specifically binds to a domain 1 β2GPI polypeptide (i.e., a mimetic shares an epitope with a domain 1 β2GPI polypeptide). A mimetic may be a polypeptide or any of a number of substances which are described herein, including organic and inorganic molecules. A mimetic may or may not contain a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.
In another aspect, the invention provides compositions comprising any of the polypeptide, polynucleotide and/or mimetic embodiments described herein. In some embodiments, the compositions also contain a pharmaceutically acceptable excipient. In some embodiments, an effective amount of the polypeptide or polypeptide is contained within a composition, wherein an effective amount is an amount sufficient to induce tolerance. In some embodiments (for detection purposes), an effective amount is an amount sufficient to detect an antibody that binds to a domain 1 β2GPI polypeptide (or mimetic).
In another aspect, the invention provides methods for detection of a β2GPI-dependent antiphospholipid antibody (or an antibody that specifically binds to a domain 1 β2GPI polypeptide(s)) in a sample comprising (a) contacting antibody in the sample with a domain 1 β2GPI polypeptide(s) (or a polypeptide comprising a domain 1 β2GPI polypeptide(s) or a domain 1 β2GPI mimetic(s)) under conditions that permit the formation of a stable antigen-antibody complex; and (b) detecting stable complex formed in step (a), if any.
In another aspect, the invention provides methods of inducing tolerance in an individual which comprise administering an effective amount of a domain 1 β2GPI polypeptide(s) to an individual, particularly a domain 1 β2GPI polypeptide(s) that lacks a T cell epitope, wherein an effective amount is an amount sufficient to induce tolerance.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 depicts the nucleotide (SEQ ID NO:1) and amino acid (SEQ ID NO:2) sequence of β2GPI. Numbers above the lines indicate amino acid positions.
FIG. 2 depicts the nucleotide (SEQ ID NO:3) and amino acid (SEQ ID NO:4) sequence of domain 1 of β2GPI. Numbers above the lines indicate amino acid positions.
FIG. 3 is a model of the tertiary structure of domain 1 of β2GPI, including key amino acids in binding to β2GPI-dependent antiphospholipid antibody.
FIG. 4 is a graph depicting the results of a competitive inhibition ELISA performed on NUNC microtiter plates. Plates were coated with wild type β2GPI. Antibody (from patient 7104) binding was competed with the various mutant β2GPI proteins. Symbols represent recombinant β2GPI proteins as follows: —□—, 12345; —□—, 1 - - - - ; ——, 12 - - - ; —□—, 123 - - ; ——, -2345; —▴—, - - 345; —□—, - - - 45; and —□—, - - - - 5. Recombinant protein designations: dashes indicate missing domains; numbers indicate domains present in the protein. For example, “`- - - 345” is a recombinant 2GPI protein lacking domains 1 and 2, but retaining domains 3, 4, and 5.
FIG. 5 is a graph depicting the results of ELISA analysis of rabbit anti-β2GPI binding to various recombinant β2GPI proteins. Nickel chelate coated microtiter wells were coated with the various recombinant β2GPI proteins at the concentrations shown, then tested for the ability of rabbit anti-β2GPI antibody to bind. Symbols represent recombinant β2GPI proteins as follows: —□—, - - 345; —□—, - - - 45; ——, - 2345; —□—, 12345; —□—, 1234 - ; ——, 123 - - ; —▴—, - - - - 5; and - - - □ - - - , GST-6his.
FIG. 6 is a graph depicting the results of ELISA analysis of anti-β2GPI binding to various recombinant β2GPI proteins. Nickel chelate coated microtiter wells were coated with the various recombinant 132GPI proteins at the concentrations shown, then tested for the ability of human anti-β2GPI antibody 6701 (from patient 6701) to bind. Symbols for the recombinant β2GPI are as in FIG. 5. Additional symbols are as follows: - - - - - - , no β2GPI, with antibody added; - - - + - - - , no β2GPI, no antibody.
FIG. 7 is a graph depicting the results of an ELISA that measured the ability of rabbit anti-β2GPI antibody to bind to various recombinant β2GPI proteins which were first bound to cardiolipin (CL) coated microtiter wells. IMMULON® plates were coated with CL and then charged with the indicated concentrations of the recombinant β2GPI proteins. Symbols for the recombinant β2GPI are as in FIG. 5.
FIG. 8 is a graph depicting the results of an ELISA that measured the ability of β2GPI-dependent antiphospholipid antibody preparation 6641 (from patient 6641) to bind to various recombinant β2GPI proteins which were first bound to CL coated microtiter wells. IMMULON® plates were coated with CL then charged with the indicated concentrations of recombinant β2GPI proteins. Symbols for the recombinant β2GPI are as in FIG. 6.
FIG. 9 is a graph depicting the results of a competitive inhibition ELISA in lid which various peptides were tested for their ability to compete with wild-type 132GPI from binding to β2GPI-dependent antiphospholipid antibody. Symbols for the peptides are as follows: —□—, β2GPI; —□—, CTPRVC; ——, FSTVVP; —□—, KPDDLP; —□—, GRTCPK; ——, TLKCTP; —▴—, ICPLTG; —□—, FICPLT; —□—, ITYSCK, —+—, GRTCPK.
FIGS. 10A and 10B are graphs depicting apparent equilibrium binding values for various concentrations of domain 1 polypeptide (FIG. 10A) and tetrameric conjugate compound 44 (FIG. 10B) to affinity purified β2GPI-dependent antiphospholipid antibodies from patient 6626. Apparent equilibrium dissociation constants are also shown.
FIG. 11A and FIG. 11B are graphs depicting apparent equilibrium binding values for various concentrations of domain 1 polypeptide (FIG. 11A) and tetrameric conjugate compound 44 (FIG. 11B) to affinity purified β2GPI-dependent antiphospholipid antibodies from patient 6701.
FIG. 12 is a graph depicting the results of competitive binding experiments in which a β2GPI (coated on NUNC microtiter plates) was reacted with plasma from patient 6501 and variable amounts of tetrameric domain (—⋄—) 1 conjugate compound 44 (—▾—), and compound 45 (—*—) as well as β2GPI domain 1 polypeptide (—♦—) and β2GPI domain 1 polypeptide that had been reduced and alkylated (—▪—).
FIGS. 13A and B are graphs depicting dose response of popliteal lymph node cells from mice immunized with a β2GPI domain 1 polypeptide-KLH conjugate in CFA (FIG. 13A) or CFA only (FIG. 13B). Symbols: —□—, KLH conjugate; —▾—, β2GPI domain 1 polypeptide not conjugated to KLH; —▪—, KLH; Δ, PPD.
FIG. 14 is a bar graph depicting a dose response (in terms of anti-β2GPI antibody) of priming with a β2GPI domain 1 polypeptide-KLH conjugate (10 μg, 50 μg, and 100 μg).
FIG. 15 is a graph depicting specificity of mouse polyclonal antibodies raised against a β2GPI domain 1 polypeptide-KLH conjugate, as determined by competition assays using various β2GPI domain mutants (—□—, 1 - - - - ; —♦—, 1 - - - - reduced and alkylated; ——, 12 - - ; —Δ—, 1234- ; - - - ▪ - - - , - 2345; - - - □ - - - , - - 345; - ▾ - - , - - - 45; —Δ—, 1- - - 5; —X—, 12345).
FIG. 16 is a bar graph depicting the effect of affinity purified β2GPI-dependent antiphospholipid antibodies on Factor Va activity in blood from various patients (6501, 6636, 6644, 7011, 7013, 6701, 7001, 6625, 6641) as well as normal plasma and IgG.



MODES FOR CARRYING OUT THE INVENTION
We have discovered that domain 1 of β2GPI specifically binds to β2GPI-dependent antiphospholipid antibody (i.e., contains an epitope(s) of a β2GPI-dependent antiphospholipid antibody). This finding is especially significant in view of the existing literature which described only domains 5 and 4 as important for this binding. See, e.g., George et al. (1998) and Yang et al. (1997). We have also discovered that domain 1 of β2GPI binds to β2GPI-dependent antiphospholipid antibodies from at least 100 different β2GPI-dependent antiphospholipid antibodies which is especially significant and important for the detection/diagnostic context as well as the toleragen context, as domain 1 β2GPI polypeptide(s) may thus be useful for a broad range of the population carrying β2GPI-dependent antiphospholipid antibodies. Further, we have found that particular peptides of domain 1 (described herein) appear to bind to β2GPI-dependent antiphospholipid antibody specifically.
Accordingly, the invention provides polypeptides comprising domain 1 β2GPI polypeptides (including isolated domain 1) which bind specifically to a 2GPI-dependent antiphospholipid antibody. The invention also provides polypeptides consisting essentially of domain 1 β2GPI polypeptides which bind specifically to a β2GPI-dependent antiphospholipid antibody. The polypeptides of the invention are useful for detection of β2GPI-dependent antiphospholipid antibody (in the diagnostic, prognostic, and/or monitoring context), and are also useful as toleragens. In some embodiments, particularly in the toleragen context, the β2GPI polypeptide(s) lacks a T cell epitope and/or is in multivalent form, such as conjugated to a platform molecule. The invention also provides polynucleotides encoding β2GPI polypeptide(s). Such polynucleotides may be used for producing β2GPI polypeptide(s), whether in vitro or in vivo. The invention also provides mimetics of a domain 1 β2GPI polypeptide(s), which share recognition (i.e., epitope) with a β2GPI-dependent antiphospholipid antibody. The invention also provides compositions comprising domain 1 β2GPI polypeptide(s), polynucleotides encoding domain 1 β2GPI polypeptide(s), and/or mimetic(s). The invention further provides methods using β2GPI polypeptide(s) and/or mimetic(s), such as for detection or inducing tolerance (i.e., the induction of B cell tolerance).
General Techniques
The practice of the present invention will employ, unless otherwise indicated, conventional techniques of molecular biology (including recombinant techniques), microbiology, cell biology, biochemistry and immunology, which are within the skill of the art. Such techniques are explained fully in the literature, such as, “Molecular Cloning: A Laboratory Manual”, second edition (Sambrook et al., 1989); “Oligonucleotide Synthesis” (M. J. Gait, ed., 1984); “Animal Cell Culture” (R. I. Freshney, ed., 1987); “Methods in Enzymology” (Academic Press, Inc.); “Handbook of Experimental Immunology” (D. M. Weir & C. C. Blackwell, eds.); “Gene Transfer Vectors for Mammalian Cells” (J. M. Miller & M. P. Calos, eds., 1987); “Current Protocols in Molecular Biology” (F. M. Ausubel et al., eds., 1987); “PCR: The Polymerase Chain Reaction”, (Mullis et al., eds., 1994); and “Current Protocols in Immunology” (J. E. Coligan et al., eds., 1991).
Definitions
A “β2GPI domain 1 polypeptide” is a polypeptide that specifically binds a β2GPI-dependent antiphospholipid antibody and has at least five contiguous amino acids depicted in FIG. 2. (SEQ. ID. NO:4; domain 1). A β2GPI domain 1 polypeptide can be shown to bind specifically to a 52GPI-dependent antiphospholipid antibody using standard assays known in the art, such as competitive inhibition assays, which are described herein as well as in the art. The term “β2GPI domain 1 polypeptide” encompasses various embodiments (many of which are described herein), including, but not limited to, SEQ ID NO:4; fragments of SEQ ID NO:4; extensions, insertions, and/or deletions of SEQ ID NO:4; sequence variants of SEQ ID NO:4. Thus, the term “β2GPI domain 1 polypeptide” is meant to describe a class of domain 1-based molecules which exhibit the requisite functionality. As such, a β2GPI domain 1 polypeptide may have at least 5 (as noted above), at least 6, at least 10, at least 12, at least 15, at least 20, at least 25, at least 30, at least 40, and/or at least 60 contiguous amino acids shown in FIG. 2 (SEQ ID NO:4). A β2GPI domain 1 polypeptide may also comprise different regions of domain 1, such that collectively these regions are able to specifically bind a β2GPI-dependent antiphospholipid antibody (such as in producing a conformational epitope). As discussed below, in some embodiments, a “β2GPI domain 1 polypeptide” also lacks a (any) detectable T cell epitope. For purposes of this invention, the T cell epitope is defined as capable of activating T cells in an individual with β2GPI dependent antiphospholipid antibodies.
A polypeptide that “specifically binds” to an antibody is a term well understood in the art, and methods to determine such specific binding are also well known in the art. A molecule is said to exhibit “specific binding” if it reacts or associates more frequently, more rapidly, with greater duration and/or with greater affinity with a particular cell or substance than it does with alternative cells or substances. An antibody “specifically binds” to a target if it binds with greater affinity, avidity, more readily, and/or with greater duration than it binds to other substances.
A “β2GPI dependent antiphospholipid antibody” is any antibody which specifically binds to β2GPI. As discussed above, the nomenclature used in the clinical arts and the literature employ alternative designations for these antibodies, such as “aPL” and “aCL” antibodies, which are included in the definition of the term “42GPI-dependent antiphospholipid antibody”, as long as the requisite binding property is present (i.e., the terms “aPL” and “aCL” antibodies include β2GPI-dependent antiphospholipid antibodies). As clearly indicated in the definition of “antibody” provided herein, a “β2GPI-dependent antiphospholipid antibody” encompasses fragments that contain the variable region, such as Fab fragments, as long as the ability to specifically bind β2GPI is preserved. As discussed below, it is understood that specific binding to any β2GPI-dependent antiphospholipid antibody is sufficient, although it may be preferable for a β2GPI domain 1 polypeptide to bind to more than one, preferably at least two, preferably at least five, more preferably at least ten, even more preferably at least 20 different β2GPI-dependent antiphospholipid antibodies.
An “antibody” (interchangeably used in plural form) is an immunoglobulin molecule capable of specific binding to a target, such as a polypeptide, through at least one antigen recognition site, located in the variable region of the immunoglobulin molecule. As used herein, the term encompasses not only intact antibodies, but also fragments thereof (such as Fab, Fab′, F(ab′)2, Fv), single chain (ScFv), mutants thereof, fusion proteins, humanized antibodies, and any other modified configuration of the immunoglobulin molecule that comprises an antigen recognition site of the required specificity.
“Intact β2GPI” refers to the amino acid sequence of the entire molecule of β2GPI (depicted in FIG. 1 and SEQ ID NO:2). The polynucleotide and polypeptide sequences of 2GPI are also publicly available in the literature and in GeneBank (Accession No. X58100).
A “fusion polypeptide” is a polypeptide comprising regions in a different position than occurs in nature. The regions may normally exist in separate proteins and are brought together in the fusion polypeptide, or they may normally exist in the same protein but are placed in a new arrangement in the fusion polypeptide. A fusion polypeptide may also arise from polymeric forms, whether linear or branched, of domain 1 β2GPI polypeptide(s).
A “T cell epitope” is a term well understood in the art and means a binding site for a T cell, more specifically, a polypeptide sequence or chemical structure that activates a T cell(s). Methods of determining the presence of T cell epitopes are also well known in the art and are described herein. It is understood that, over time, more sensitive assays may be developed to detect the presence of T cell epitopes, and that specifying the lack of T cell epitopes is dependent on the type of detection system used. For purposes of this invention, “lacking” a T cell epitope is taken to mean that a T cell epitope is not detectable using standard assays in the art, particularly as of the initial filing date of this application. It is also understood that, for purposes of this invention, a “T cell epitope” is one that is capable of stimulating T cells in an individual who has β2GPI-dependent antiphospholipid antibodies.
The terms “polynucleotide” and “nucleic acid”, used interchangeably herein, refer to a polymeric form of nucleotides of any length, either ribonucleotides or deoxyribonucleotides. These terms include a single-, double- or triple-stranded DNA, genomic DNA, cDNA, RNA, DNA-RNA hybrid, or a polymer comprising purine and pyrimidine bases, or other natural, chemically, biochemically modified, non-natural or derivatized nucleotide bases. The backbone of the polynucleotide can comprise sugars and phosphate groups (as may typically be found in RNA or DNA), or modified or substituted sugar or phosphate groups. Alternatively, the backbone of the polynucleotide can comprise a polymer of synthetic subunits such as phosphoramidates and thus can be a oligodeoxynucleoside phosphoramidate (P-NH2) or a mixed phosphoramidate-phosphodiester oligomer. A phosphorothiate linkage can be used in place of a phosphodiester linkage. In addition, a double-stranded polynucleotide can be obtained from the single stranded polynucleotide product of chemical synthesis either by synthesizing the complementary strand and annealing the strands under appropriate conditions, or by synthesizing the complementary strand de novo using a DNA polymerase with an appropriate primer.
The following are non-limiting examples of polynucleotides: a gene or gene fragment, exons, introns, mRNA, tRNA, rRNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids, vectors, isolated DNA of any sequence, isolated RNA of any sequence, nucleic acid probes, and primers. Preferably, the polynucleotide is DNA. As used herein, “DNA” includes not only bases A, T, C, and G, but also includes any of their analogs or modified forms of these bases, such as methylated nucleotides, internucleotide modifications such as uncharged linkages and thioates, use of sugar analogs, and modified and/or alternative backbone structures, such as polyamides.
“Naturally occurring” refers to an endogenous polynucleotide or polypeptide sequence, i.e., one found in nature. The term includes alleles and allelic forms of the encoded protein, as well as full-length as processed polynucleotides and polypeptides. Processing can occur in one or more steps, and these terms encompass all stages of processing. Conversely, a “non-naturally occurring” sequence refers to all other sequences, i.e., ones which do not occur in nature, such as recombinant sequences.
A “host cell” includes an individual cell or cell culture which can be or has been a recipient for vector(s) or for incorporation of polynucleotides and/or proteins. Host cells include progeny of a single host cell, and the progeny may not necessarily be completely identical (in morphology or in genomic of total DNA complement) to the original parent cell due to natural, accidental, or deliberate mutation. A host cell includes cells transfected in vivo with a polynucleotide(s) of this invention.
“Transformation” or “transfection” refers to the insertion of an exogenous polynucleotide into a host cell, irrespective of the method used for the insertion, for example, lipofection, transduction, infection or electroporation. The exogenous polynucleotide may be maintained as a non-integrated vector, for example, a plasmid, or alternatively, may be integrated into the host cell genome.
As used herein, the term “mimetic” (also termed an “analog”) means a biological or chemical compound which specifically binds to a β2GPI-dependent antiphospholipid antibody to which a domain 1 β2GPI polypeptide binds specifically. A “mimetic” shares an epitope, or binding specificity, with a domain 1 β2GPI polypeptide. A mimetic may be any chemical substance which exhibits the requisite binding properties, and thus may be, for example, a simple or complex organic or inorganic molecule; a polypeptide; a polynucleotide; a carbohydrate; a lipid; a lipopolysaccharide; a lipoprotein, or any combination of the above, including, but not limited to, a polynucleotide-containing polypeptide; a glycosylated polypeptide; and a glycolipid. The term “mimetic” encompasses the term “mimotope”, which is a term well known in the art.
An “individual” is a vertebrate, preferably a mammal, more preferably a human. Mammals include, but are not limited to, farm animals, sport animals, pets, primates, mice and rats.
“B cell anergy” is a term well understood in the art and means unresponsiveness of those B cells requiring T cell help to produce and secrete antibody and includes, but is not limited to, clonal deletion of immature and/or mature B cells and/or the inability of B cells to produce antibody.
“Inducing tolerance” means a reduction and/or stabilization of the extent of an immune response to an immunogen. An “immune response” may be humoral and/or cellular, and may be measured using standard assays known in the art. For purposes of this invention, the immune response is generally reflected by the presence of lβ2GPI-dependent antiphospholipid antibodies. Quantitatively the reduction (as measured by reduction in antibody production) is at least about 25%, more preferably at least about 50%, more preferably at least about 75%, more preferably at least about 90%, even more preferably at least about 95%, and most preferably 100%. It is understood that the tolerance is antigen-specific, and applies for purposes of the invention to those individuals having β2GPI-dependent antiphospholipid antibodies. “Inducing tolerance” also includes slowing and/or delaying the rate of increase of antibody level.
A “biological sample” encompasses a variety of sample types obtained from an individual and can be used in a diagnostic or monitoring assay. The definition encompasses blood and other liquid samples of biological origin, solid tissue samples such as a biopsy specimen or tissue cultures or cells derived therefrom, and the progeny thereof. The definition also includes samples that have been manipulated in any way after their procurement, such as by treatment with reagents, solubilization, or enrichment for certain components, such as proteins or polynucleotides. The term “biological sample” encompasses a clinical sample, and also includes cells in culture, cell supernatants, cell lysates, serum, plasma, biological fluid, and tissue samples.
A “stable complex” formed between any two or more components in a biochemical reaction, refers to a duplex or complex that is sufficiently long-lasting to persist between formation of the duplex or complex and subsequent detection, including any optional washing steps or other manipulation that may take place in the interim.
An “isolated” or “purified” polypeptide or polynucleotide is one that is substantially free of the materials with which it is associated in nature. By substantially free is meant at least 50%, preferably at least 70%, more preferably at least 80%, even more preferably at least 90% free of the materials with which it is associated in nature.
A polynucleotide is said to “encode” a polypeptide if, in its native state or when manipulated by methods well known to those skilled in the art, it can be transcribed and/or translated to produce the polypeptide or a fragment thereof. For purposes of this invention, and to avoid cumbersome referrals to complementary strands, the anti-sense (or complementary) strand of such a polynucleotide is also said to encode the sequence; that is, a polynucleotide sequence that “encodes” a polypeptide includes both the conventional coding strand and the complementary sequence (or strand).
An “effective amount” (when used in the toleragenic context) is an amount sufficient to effect beneficial or desired clinical results. An effective amount can be administered in one or more administrations. For purposes of this invention, an effective amount of a domain 1 β2GPI polypeptide(s) is an amount sufficient to induce tolerance, particularly with respect to β2GPI-dependent antiphospholipid antibodies. In terms of treatment, an “effective amount” of a domain 1 β2GPI polypeptide(s) is an amount sufficient to palliate, ameliorate, stabilize, reverse, slow or delay progression of a β2GPI-dependent antiphospholipid-associated disease state (i.e., a state in which β2GPI-dependent antiphospholipid antibodies indicate potential or actual pathology). Detection and measurement of indicators of efficacy are generally based on measurement of β2GPI-dependent antiphospholipid antibody and/or clinical symptoms associated with the disease state, such as arterial or venous thrombosis, fetal loss, transient ischemic attack, cerebrovascular accidents, amaurosis fugax (monocular vision), autoimmune hemolytic anemia, cardiac valve lesions, myocardial infarction, thrombocytopenia, and migraine conditions.
As used herein “valency platform molecule” means a nonimmunogenic molecule containing sites which allow the attachment of a discreet number of polypeptides (in this invention, domain 1 β2GPI polypeptides) and/or mimetic(s).
“Nonimmunogenic”, when used to describe the valency platform molecule, means that the valency platform molecule fails to elicit an immune response, and/or fails to elicit a sufficient immune response, when it is administered by itself to an individual. The degree of acceptable immune response depends on the context in which the valency platform molecule is used, and may be empirically determined.
As used herein “pharmacophore” means the three dimensional orientation and chemical properties of key groups involved in binding of a domain 1 β2GPI polypeptide to the antibody target.
Domain 1 β2GPI Polypeptides of the Invention
The invention provides domain 1 β2GPI polypeptide(s). As described above, a domain 1 β2GPI polypeptide (a) contains at least five (or more) contiguous amino acids of FIG. 2 (SEQ ID NO:4), which depicts domain 1; and (b) specifically binds to a β2GPI-dependent antiphospholipid antibody (i.e., one or more β2GPI-dependent antiphospholipid antibodies). A model of the three-dimensional structure of domain 1 β2GPI is presented in FIG. 3 (based on actual structure of factor H1 sushi domain 16 as determined by nmr (Norman et al. (1991) J. Mol. Biol. 219:717; Barlow et al. (1991) Biochem. 30:997), and residues which may be involved in structural integrity and/or antibody binding, as determined by mutagenesis studies, including those presented herein, are indicated. With respect to all polypeptide embodiments of the invention, it is understood that the polypeptides of the invention do not include native, intact β2GPI, or any other previously isolated and characterized form of β2GPI, such as domain deletion mutants (i.e., domains 1, 2, 3; domains 1, 2, 3, 4).
In one embodiments, the invention includes a domain 1 β2GPI polypeptide containing (or, in some embodiments, consisting of or consisting essentially of) a domain 1 β2GPI polypeptide, provided that the polypeptide does not consist of (a) intact β2GPI (SEQ ID NO:2), (b) domains 1, 2, and 3; or (c) domains 1, 2, 3, and 4.
In one embodiment, the invention includes a polypeptide consisting of (or, in some embodiments, consisting essentially of) the amino acid sequence shown in FIG. 2 (SEQ ID NO:4), which represents domain 1. We have shown that only those domain deletion β2GPI polypeptides containing domain 1 are able to specifically bind to a β2GPI-dependent antiphospholipid antibody, and that domain 1 alone is able to bind a β2GPI-dependent antiphospholipid antibody, as described in Example 1. For purposes of this invention, domain 1 of β2GPI is generally about amino acid 1 to about amino acid 64 of β2GPI (FIG. 1). Alternatively, and also for purposes of this invention, domain 1 (and accordingly a domain 1 β2GPI polypeptide of the invention) may range from (a) about the first cysteine to about the fourth cysteine (when determined from the N-terminus); (b) about the N terminus to about the fifth cysteine (more precisely, the last amino acid before the fifth cysteine); (c) about the first cysteine to about the fifth cysteine. In some embodiments, an additional cysteine may be added in any suitable position, to serve as a reactive group for conjugation. Accordingly, a additional cysteine (which in some embodiments is the fifth cysteine of β2GPI) may be included in any position, particularly near or at the C terminus or N terminus. A domain 1 β2GPI polypeptide may also comprise (or consist of, or consist essentially of) any of the following: (a) amino acid 1 to amino acid 59 of SEQ ID NO:4; (b) amino acid 2 to amino acid 60 of SEQ ID NO:4; (c) amino acid 2 to amino acid 63 of SEQ ID NO:4; (d) amino acid 1 to amino acid 66 of SEQ ID NO: 1; (e) amino acid 4 to amino acid 66 of SEQ ID NO: 1; (e about amino acid 1 to about amino acid 60 of SEQ ID NO:4; (g) about amino acid 1 to about amino acid 66 of SEQ ID NO:1 We have found that domain 1 β2GPI polypeptides which contain the fifth cysteine are particularly convenient for conjugation (discussed below). For those embodiments containing (comprising) the first four cysteines of β2GPI, it is understood that, generally, the amino acid sequence between the cysteines should be such that the appropriate disulfide bridges are formed, while the amino acid sequences flanking the cysteines (i.e., the N terminus and C terminus amino acids) may be any sequence (as long as the requisite structure which allows binding to antibody is preserved).
In other embodiments, the invention includes a polypeptide comprising any of the polypeptides shown in Table 1 (SEQ ID NOS:5-11). Our experiments (described in Example 3) demonstrate that these polypeptides are able to bind specifically to a β2GPI-dependent antiphospholipid antibody.
With respect to all polypeptide embodiments of this invention, the polypeptide(s) specifically binds to a β2GPI-dependent antiphospholipid antibody. Specific binding to a β2GPI-dependent antiphospholipid antibody may be determined using standard techniques in the art, such as competitive binding assays. For example, microtiter plates may be coated with β2GPI (whether naturally-occurring or recombinant, as long as the recombinant molecule displays the requisite binding properties), and test polypeptide added in varying concentrations. Affinity purified β2GPI-dependent antiphospholipid antibody is then added, and binding allowed to occur. The amount of bound antibody is determined by detection systems such as alkaline phosphatase conjugated anti-human IgG, or radioactivity. Specific binding is indicated by the ability of the test polypeptide to compete for binding to β2GPI. Examples 1 and 3 provide exemplary assays for detection of competitive binding. Specific binding may also be determined by direct binding assays, which are known in the art and exemplified in Examples 1 and 3.
It is understood that, for purposes of this invention, the domain 1 β2GPI polypeptide need only bind to one 2GPI-dependent antiphospholipid antibody, although it may be desirable (for example, in the detection context), for the domain 1 β2GPI polypeptide to bind to more than one β2GPI-dependent antiphospholipid antibody. The source of the β2GPI-dependent antiphospholipid antibody is generally from an individual, and the antibody sequence may vary from individual to individual. It is also understood that specifically binding to a β2GPI-dependent antiphospholipid antibody may be demonstrated by using a fragment or other recombinant product of a β2GPI-dependent antiphospholipid antibody, such as an Fab fragment, or single chain variable region constructs (scFv), which are known in the art.
Accordingly, in some embodiments, a domain 1 β2GPI polypeptide binds to more than one β2GPI-dependent antiphospholipid antibody (i.e., at least 2, at least 5, at least 10, at least 20, at least 50 or more). These embodiments are especially useful for detection, as these polypeptide(s) may be used to detect over a broader spectrum of individuals who may carry a β2GPI-dependent antiphospholipid antibody.







TABLE 1







Fragments of domain 1 which specifically bind to


β2GPI-dependent antiphospholipid antibody










Sequence
SEQ ID NO:














CTPRVC
5



FSTVVP
6



KPDDLP
7



GRTCPK
8



TLKCTP
9



ICPLTG
10



FICPLT
11



ITYSCK
12










In some embodiments, a domain 1 β2GPI polypeptide contains a sushi structure. “Sushi domain” is understood by those in the art and is generally characterized by (a) containing certain residues (such as proline, phenylalanine, tryosine, glycine, leucine, valine and/or histidine) which coil the polypeptide chain into a circular structure; (b) generally having a molecular weight of approximately 6 kD; and (c) containing a β folded structure. Ichmose et al. (1990) J. Biol. Chem. 1265:13411.
It is also understood that a domain 1 β2GPI polypeptide may bind to β2GPI-dependent antiphospholipid antibody via a conformational epitope(s). Accordingly, in some embodiments, a domain 1 β2GPI polypeptide comprises (a) amino acids 55, 56, and 58 (ile; asn; leu) of FIG. 3 (amino acids 55, 56, and 58 of SEQ ID NO:4); (b) amino acids 43-45 (arg; lys; phe) of FIG. 3 (amino acids 43 to 45 of SEQ ID NO:4); (c) amino acids 40 to 45 of SEQ ID NO:4 (gly; gly; met; arg; lys; phe), preferably amino acids 38-44 of FIG. 3 (amino acids 38 to 44 of SEQ ID NO:4); and/or (d) amino acid 19 (lys) of FIG. 3 (amino acid 19 of SEQ ID NO:4), preferably (a) and (b); preferably (a) and (c); preferably (b) and (c); preferably (a) and (d); preferably (b) and (d); preferably (c) and (d); preferably (a), (b) and (d); preferably (a), (c) and (d); preferably (b), (c) and (d); preferably (a), (b) and (c); preferably (a), (b), (c) and (d). We have found through our mutagenesis studies that these amino acids may be critical for binding, either collectively or individually.
The size of a domain 1 β2GPI polypeptide (or a polypeptide comprising a domain 1 β2GPI polypeptide may vary widely, as long as the requisite functionality (based on specific binding to a β2GPI-dependent antiphospholipid antibody) is met. For example, the length required to effect specific binding to a β2GPI-dependent antiphospholipid antibody could be as small as, for example, a 5-mer amino acid sequence. Our data has shown amino acid sequences as small as a 6-mer can specifically bind to a β2GPI-dependent antiphospholipid antibody (Example 3).
In some embodiments, the domain 1 β2GPI polypeptide(s) (and the polypeptide comprising or consisting essentially of a domain 1 β2GPI polypeptide(s)) is less than about 350 amino acids in length, preferably less than about 300 amino acids in length, preferably less than about 250 amino acids in length, preferably less than about 200 amino acids in length, preferably less than about 160 amino acids in length, preferably less than about 150 amino acids in length, preferably less than about 125 amino acids in length, preferably less than about 115 amino acids in length, preferably less than about 110 amino acids in length, preferably less than about 100 amino acids in length, preferably less than about 75 amino acids in length, preferably less than about 60 amino acids in length, preferably less than about 50 amino acids in length, preferably less than about 25 amino acids in length, preferably less than about 15 amino acids in length, preferably less than about 10 amino acids in length.
It is understood that a domain 1 β2GPI polypeptide(s) may be associated with, conjugated with, and/or connected to other domain 1 β2GPI polypeptide(s) (whether these domain 1 β2GPI polypeptide(s) are the same or different), as well as other domains of β2GPI. Accordingly, the invention encompasses polymeric forms of domain 1 β2GPI polypeptide(s). As used herein, a polymeric form of a domain 1 β2GPI polypeptide contains a plurality (i.e., more than 1) domain 1 β2GPI polypeptide(s). In one embodiment, linear polymers of domain 1 β2GPI polypeptides are provided. In another embodiment, branched polymers of domain 1 β2GPI polypeptides are provided. In other embodiments, the invention provides (a) a plurality of domain 1 β2GPI polypeptide(s); (b) a polypeptide comprising a domain 1 β2GPI polypeptide and one or more other domains of β2GPI. Examples of such embodiments include, are not limited to, a domain 1 β2GPI polypeptide(s) conjugated with (a) domain 2; (b) domain 3; (c) domain 5; (e) domains 3, 4 and 5; (f) domains 4 and 5. These domains are understood by those in the art and are generally as follows (from the N terminus): domain 2, about amino acid 65 to about amino acid 120; domain 3, about amino acid 121 to about amino acid 181; domain 4, about amino acid 182 to about amino acid 244; domain 5, about amino acid 245 to about amino acid 326 (C terminus).
In another embodiment, domain 1 β2GPI multiple antigen peptides (Maps) are provided. Maps have a small immunologically inert core having radially branching lysine dendrites, onto which a number of domain 1 β2GPI polypeptides can be anchored (i.e., covalently attached). Posnett et al. (1988) J. Biol. Chem. 263:1719-1725; Tam (1989) Meth. Enz. 168:7-15. The result is a large macromolecule having a high molar ratio of domain 1 β2GPI polypeptides to core. Maps are useful, efficient antigens for assays such as ELISA, and may also be useful for multivalent presentation, such as in the toleragenic context. Maps can be made synthetically and can be obtained commercially (Quality Controlled Biochemicals, Inc. Hopkinton, Mass.). In a typical Map system, a core matrix is made up of three levels of lysine and eight amino acids for anchoring domain 1 β2GPI polypeptides. The Map may be synthesized by any method known in the art, for example a solid-phase method, for example, R. B. Merrifield (1963)J. Am. Chem. Soc. 85:2149.
It is understood that any branched structure, such as cyclodextrin, may be used. The branched structure may be, but need not be, small. In the context of inducing tolerance, the platform should not act as a T cell independent antigen.
It is also understood that certain sequence variations may be introduced into a domain 1 β2GPI polypeptide(s) which may preserve or enhance its reactivity. Accordingly, the invention includes modifications to domain 1 β2GPI polypeptide(s) which do not significantly affect their properties as well as variants which have enhanced activity. These variant and modified sequences are collectively denoted as “functionally equivalent variants”, which may have the same, enhanced, or diminished binding when compared to another domain 1 β2GPI polypeptide(s), and are denoted “equivalent” because they maintain the ability to specifically bind to a β2GPI-dependent antiphospholipid antibody. Modification of polypeptides is routine practice in the art and need not be described in detail herein. Examples of modified polypeptides include polypeptides with conservative substitutions of amino acid residues, one or more deletions or additions of amino acids which do not significantly deleteriously change the functional activity, or use of chemical analogs, including alpha-methyl amino acid substitutions, non-protein naturally occurring amino acids (such as canavanine, DL methionine sulfoxide, delta-hydroxylysine hydrochloride, and aminoisobutyric acid), and unnatural amino acids. Amino acid residues which can be conservatively substituted for one another include but are not limited to: glycine/alanine; valine/isoleucine/leucine; asparagine/glutamine; aspartic acid/glutamic acid; serine/threonine; lysine/arginine; and phenylalanine/tyrosine. These polypeptides also include glycosylated and nonglycosylated polypeptides, as well as polypeptides with other post-translational modifications, such as, for example, glycosylation with different sugars, acetylation, and phosphorylation. Preferably, the amino acid substitutions would be conservative, i.e., the substituted amino acid would possess similar chemical properties as that of the original amino acid. Such conservative substitutions are known in the art, and examples have been provided above.
It is understood that certain amino acid variations (such as substitutions) may or may not affect binding of a domain 1 β2GPI polypeptide to β2GPI-dependent antiphospholipid antibodies in the same manner, or to the same degree. Further, the nature of the substitute amino acid(s) could affect the manner and/or degree of binding. For example, we have found that substituting a glycine residue for an arginine residue at position 43 (amino acid 43 of SEQ ID NO:4) causes loss of ability to bind to antibody in some patient's sera, while others are unchanged (and still others have changed (i.e., intermediate) ability to bind. As another example, substitution of a lysine or threonine for the methionine at position 42 does not appear to affect binding (in the patients we have tested); however, if a valine is substituted for methionine at position 42 binding appears to be abolished in all patients.
In addition to the twenty naturally-occurring amino acids and their homoanalogs and noranalogs, several other classes of alpha amino acids can be employed in the present invention. Examples of these other classes include d-amino acids, NA-alkyl amino acids, alpha-alkyl amino acids, cyclic amino acids, chimeric amino acids, and miscellaneous amino acids. These non-natural amino acids have been widely used to modify bioactive polypeptides to enhance resistance to proteolytic degradation and/or to impart conformational constraints to improve biological activity. Hruby et al. (1990) Biochem. J. 268:249-262; Hruby et al. (1995) Methods in Mol. Biol. 35:201-240.
The most common Na-alkyl amino acids are the Na-methyl amino acids, such as Na-methyl cysteine (nC), Na-methyl glycine (nG), Na-methyl leucine (nL), Na-methyl lysine (nK), and N-methyl valine (nV). Examples of alpha-alkyl amino acids include alpha-methyl alanine (mA), alpha-aminoisobutyric acid (aiB), alpha-methyl proline (mP), alpha-methyl leucine (mL), alpha-methyl valine (mV), alpha-methyl-alpha-aminobutyric acid (tv), diethylglycine (deG), diphenylglycine (dpG), and dicyclohexyl glycine (dcG). Balaram (1992) Pure & Appl. Chem. 64:1061-1066; Toniolo et al. (1993) Biopolymers 33:1061-1072; Hinds et al. (1991) Med. Chem. 34:1777-1789.
Examples of cyclic amino acids include I-amino-1-cyclopropane carboxylic acid (cG), 1-amino-1-cyclopentane carboxylic acid (Ac5c), 1-amino-1-cyclohexane carboxylic acid (Ac6c), aminoindane carboxylic acid (ind), tetrahydroisoquinoline carboxylic acid (Tic), and pipecolinic acid (Pip). C. Toniolo (1990) Int'l. J. Peptide Protein Res. 35:287-300; Burgess et al. (1995) J. Am. Chem. Soc. 117:3808-3819. Examples of chimeric amino acids include penicillamine (Pe), combinations of cysteine with valine, 4R- and 4S-mercaptoprolines (Mpt), combinations of homocysteine and proline and 4R- and 4S-hydroxyprolines (hyP) and a combination of homoserine and proline. Examples of miscellaneous alpha amino acids include basic amino acid analogs such as omithine (Or), Nε-methyl lysine (mK), 4-pyridyl alanine (pyA), 4-piperidino alanine (piA), and 4-aminophenylalanine; acidic amino acid analogs such as citrulline (Cit), and 3-hydroxyvaline; aromatic amino acid analogs such as 1-naphthylalanine (1-Nal), 2-naphthylalanine (2-Nal), phenylglycine (pG), 3,3-diphenylalanine (dpA), 3-(2-thienyl)alanine (Thi), and halophenylalanines (e.g., 2-fluorophenylalanine and 4-chlorophenylalanine); hydrophobic amino acid analogs such as t-butylglycine (i.e., tertiary leucine (tL)), 2-aminobutyric acid (Abu), cyclohexylalanine (Cy), 4-tetrahydropyranyl alanine (tpA), 3,3-dicyclohexyl alanine (dcA), and 3,4-dehydroproline.
In addition to alpha-amino acids, others such as beta amino acids can also be used in the present invention. Examples of these other amino acids include 2-aminobenzoic acid (Abz), β-aminopropanoic acid (P-Apr), γ-aminobutyric acid (γ-Abu), and 6-aminohexanoic acid (ε-Ahx). Carboxylic acids such as 4-chlorobutyric acid (By) and 3-chloropropionic acid (Pp) have also been used as the first residue on the N-terminal in the synthesis of cyclic thioether peptides.
Other methods of modification including using coupling techniques known in the art, including, but not limited to, enzymatic means, oxidative substitution and chelation. Modification can be used, for example, for attachment of labels for immunoassay, such as the attachment of radioactive moieties for radioimmunoassay. Modified domain 1 β2GPI polypeptide(s) are made using established procedures in the art and can be screened using standard assays known in the art, some of which are described herein and in the examples.
The invention also encompasses fusion proteins comprising one or more (β2GPI domain 1 polypeptides. For purposes of this invention, a β2GPI domain 1 fusion protein contains one or more β2GPI polypeptides and another amino acid sequence to which it is not attached in the native molecule, for example, a heterologous sequence or a homologous sequence from another region, such as another domain of β2GPI. Useful heterologous sequences include, but are not limited to, sequences that provide for secretion from a host cell, enhance immunological reactivity, or facilitate the coupling of the polypeptide to an immunoassay support or a carrier. For instance, a β2GPI polypeptide can be fused with a heterologous sequence which facilitates purification. Examples of such sequences are known in the art and include those encoding epitopes such as Myc, HA (derived from influenza virus hemagglutinin), His-6, or FLAG. Other heterologous sequences that facilitate purification are derived from proteins such as glutathione S-transferase (GST), maltose-binding protein (MBP), or the Fc portion of immunoglobulin.
A domain 1 β2GPI polypeptide may or may not contain a T cell epitope. For detection purposes, a domain 1 β2GPI polypeptide may or may not contain a T cell epitope(s), since the primary use of the polypeptide in this context is for detection of β2GPI-dependent antiphospholipid antibody, which is independent of the presence of T cell epitopes. In the toleragen context, however, a domain 1 β2GPI polypeptide lacks a (any) detectable T cell epitope(s) with respect to an individual who has β2GPI-dependent antiphospholipid antibodies. Thus, in some embodiments, a domain 1 β2GPI polypeptide does not contain (i.e., lacks) a T cell epitope (and, accordingly, a polypeptide comprising a domain 1 β2GPI polypeptide does not contain a T cell epitope).
Methods for detecting the presence of a T cell epitope are well known in the art. For example, various assays which detect T cell proliferation (such as thymidine incorporation) may be used. The presence of T cell epitopes can also be determined by measuring secretion of T cell-derived lymphokines by methods well known in the art. Polypeptides that fail to induce statistical significant incorporation of thymidine above background (i.e., generally p less than 0.05 using standard statistical methods) are generally considered to lack T cell epitopes, although it will be appreciated that the quantitative amount of thymidine incorporation may vary, depending on the polypeptide being tested. Generally, a stimulation index below about 2-3, more preferably less than about 1, indicates lack of T cell epitopes. Location and content of T cell epitopes are determined empirically.
In the toleragen context, a domain 1 β2GPI polypeptide preferably binds specifically to a β2GPI-dependent antiphospholipid antibody on the surface a B cell (i.e., binds to a surface antibody on a B cell, wherein the antibody is able to specifically bind a β2GPI-dependent antiphospholipid epitope). This binding, especially in conjunction with cross linking, is thought to trigger B cell anergy. It is understood that, because by definition a domain 1 β2GPI polypeptide is able to specifically bind a β2GPI-dependent antiphospholipid antibody, it would be expected that any domain 1 β2GPI polypeptide would likewise be capable of binding to a surface β2GPI-dependent antiphospholipid antibody on a B cell.
As discussed below (and above in discussing polymeric forms), preferably, in the toleragen context, a domain 1 β2GPI polypeptide is presented in a multi-valent form, whether via a polymeric form and/or conjugated to an appropriate valency platform molecule.
Preparation of Polypeptides of this Invention
The polypeptides of this invention can be made by procedures known in the art. The polypeptides can be produced by recombinant methods (i.e., single or fusion polypeptides) or by chemical synthesis. Polypeptides, especially shorter polypeptides up to about 50 amino acids, are conveniently made by chemical synthesis. Methods of chemical synthesis are known in the art and are commercially available. For example, a polypeptide could be produced by an automated polypeptide synthesizer employing the solid phase method. Polypeptides can also be made by chemical synthesis using techniques known in the art.
Polypeptides can also be made by expression systems, using recombinant methods. The availability of polynucleotides encoding polypeptides permits the construction of expression vectors encoding intact (i.e., native) polypeptide, functionally equivalent fragments thereof, or recombinant forms. A polynucleotide encoding the desired polypeptide, whether in fused or mature form, and whether or not containing a signal sequence to permit secretion, may be ligated into expression vectors suitable for any convenient host. Both eukaryotic and prokaryotic host systems can be used. The polypeptide is then isolated from lysed cells or from the culture medium and purified to the extent needed for its intended use. Purification or isolation of the polypeptides expressed in host systems can be accomplished by any method known in the art. For example, cDNA encoding a polypeptide intact or a fragment thereof can be operatively linked to a suitable promoter, inserted into an expression vector, and transfected into a suitable host cell. The host cell is then cultured under conditions that allow transcription and translation to occur, and the desired polypeptide is recovered. Other controlling transcription or translation segments, such as signal sequences that direct the polypeptide to a specific cell compartment (i.e., for secretion), can also be used. Examples of prokaryotic host cells are known in the art and include, for example, E. coli and B. subtilis. Examples of eukaryotic host cells are known in the art and include yeast, avian, insect, plant, and animal cells such as COS7, HeLa, CHO and other mammalian cells. Yeast systems include Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Pichia pastoris. 
For example, to express a β2GPI domain 1 polypeptide in Pichia pastoris (using, for instance, strains SMD 1168 and SMD1168H), a full-length cDNA encoding β2GPI is used as a PCR template to create domain 1 gene fragments with a reconstituted Kex2 signal peptide cleavage site at the amino terminus. The fragments are cloned into the expression vector pPICZalpha (Invitrogen Corp.), which is linearized with the restriction enzymes Xho I and Sal I. The constructed genes replace the native domain 1 signal peptide with the yeast alpha-factor signal peptide, and terminate at selected amino acids at the carboxy terminus.
When using an expression system to produce β2GPI polypeptides, it is often preferable to construct a fusion protein that facilitates purification. Examples of components for these fusion proteins include, but are not limited to myc, HA, FLAG, His-6, glutathione S-transferase, maltose binding protein or the Fc portion of immunoglobulin. These methods are known in the art. See, for example, Redd et al. (1997) J. Biol. Chem. 272:11193-11197. Techniques known in the art may be employed to remove unwanted amino acids from fusions, such as His-6. For example, carboxypeptidase A may be used to eliminate carboxyterminal amino acid Carboxypeptidase A stops at amino acids proline or arginine. For convenience of purification, solid phase carboxypeptidase A (Sigma) may be used.
Preferably, especially if used for diagnostic purposes, the polypeptides are at least partially purified or isolated from other cellular constituents. Preferably, the polypeptides are at least 50% pure. In this context, purity is calculated as a weight percent of the total protein content of the preparation. More preferably, the proteins are 50-75% pure. More highly purified polypeptides may also be obtained and are encompassed by the present invention. For clinical use, the polypeptides are preferably highly purified, at least about 80% pure, and free of pyrogens and other contaminants. Methods of protein purification are known in the art and are not described in detail herein.
In some systems, especially some recombinant systems, for embodiments which contain an extra (fifth) cysteine, or a cysteine which is to be reduced (in order to, for example, conjugate the polypeptide to a platform molecule), the initial product may comprise low molecular weight mixed disulfides, in which the fifth (or extra, reactive) cysteine is covalently linked to other, relatively low molecular weight moiety or moieties. In these instances, selective reduction of the extra cysteine is desired (while maintaining other disulfide bonds). Such selective reduction may be accomplished by using a solid phase reductant agent, such as DTT, on a solid support, such as acrylamide (such as REDUCTACRYL by CalBiochem, San Diego).
Further, in systems which are designed and/or used to produce a domain 1 β2GPI polypeptide with an extra cysteine (i.e., the cysteine is to serve as a reactive group), it may be desirable to make the polypeptide such that an additional amino acid or acids follow the extra cysteine in the sequence, to protect the cysteine during synthesis and/or production.
Preferably, especially if the polypeptide is to be conjugated to a platform (discussed below), chemical synthesis is used. Chemical synthesis permits modification of the N or C terminus, which facilitates conjugation to a platform molecule.
When producing a domain 1 β2GPI polypeptide, such as those which have an additional cysteine in addition to the four cysteines of domain 1 (which form disulfide linkages), conditions should be selected to promote correct disulfide bridge formation. As an example, a reduced polypeptide is denatured by dissolving in 6 M guanidinium hydrochloride (GnHCl) to yield a concentration of 0.5 mg/ml. Folding is achieved by dialysis at room temperature against the following renaturant buffer: 0.1 M GnHCl, 0.5 mM Tris-HCl and 1 mM EDTA, pH 8.5. To assist correct disulfide bridges formation, a mixture of 0.3 mM and 3 mM of respectively oxidized and reduced glutathione is added. The reaction mixture is monitored by HPLC and the different products analyzed by mass spectrometry. In our experiments, after 5 hours of cyclization, analytical HPLC showed approximately 65% conversion of which 50% had the correct mass (Mw=7260) and  ̃15% existing as a glutathione adduct (Mw=7567). The folded protein lacking glutathionine is then purified by reverse phase HPLC.
Conjugates of Domain 1 β2GPI Polypeptide(s)
The invention also provides conjugates of domain 1 β2GPI polypeptide(s). In some embodiments, domain 1 β2GPI polypeptide(s) can be conjugated with carrier or label. A number of techniques for obtaining such linkage are known in the art and need not be described in detail herein. Any carrier can be used which is safe and does not itself induce the production of antibodies harmful to the host. Suitable carriers are typically large, slowly metabolized macromolecules such as proteins; polysaccharides, such as latex functionalized sepharose, agarose, cellulose, cellulose beads and the like; polymeric amino acids, such as polyglutamic acid, polylysine, and the like; amino acid copolymers; and inactive virus particles or attenuated bacteria, such as Salmonella. Especially useful protein substrates are serum albumins, keyhole limpet hemacyanin, immunoglobulin molecules, thyroglobulin, ovalbumin, tetanus toxoid, and other proteins well known to those of skill in the art.
Labels are known in the art and need not be described in detail herein. There are many different labels and methods of labeling known to those of ordinary skill in the art. Examples of the types of labels which can be used in the present invention include enzymes, radioisotopes, fluorescent compounds, colloidal metals, chemiluminescent compounds, and bioluminescent compounds. Those of ordinary skill in the art will know of other suitable labels, or will be able to ascertain such, using routine experimentation. Furthermore, the binding of these labels to polypeptides of the invention can be done using standard techniques common to those of ordinary skill in the art.
Domain 1 β2GPI polypeptide(s) (most preferably lacking a T cell epitope) may be conjugated to a non-immunogenic valency platform molecule (also termed “platform”), which enhances presentation of the domain 1 β2GPI polypeptide(s). U.S. Pat. Nos. 5,162,515; 5,276,013; 5,552,391. A platform may be proteinaceous or non-proteinaceous (i.e., organic). Examples of proteinaceous platforms include, but are not limited to, albumin, gammaglobulin, immunoglobulin (IgG) and ovalbumin. Borel et al. (1990) Immunol. Methods 126:159-168; Dumas et al. (1995) Arch. Dematol. Res. 287:123-128; Borel et al. (1995) Int. Arch. Allergy Immunol. 107:264-267; Borel et al. (1996) Ann. N.Y. Acad. Sci. 778:80-87. Most preferably, a platform is multi-valent (i.e., contains more than one binding, or linking, site). Preferably, a multi-valent platform contains at least two, more preferably at least 3, more preferably at least 5, more preferably at least 7, more preferably at least 10, even more preferably at least 12, even more preferably at least 15 linking sites. It is understood, however, that in the context of inducing tolerance (i.e., when a platform is used in conjunction with an appropriate domain 1 β2GPI polypeptide to effect immunotolerance), depending on the nature of the domain 1 β2GPI polypeptide(s) employed and the particular condition, any of a number of linking sites may be sufficient. It is also understood that a platform is not a T cell independent antigen.
Preferred valency platform molecules are biologically stabilized, i.e., they exhibit an in vivo excretion half-life often of hours to days to months to confer therapeutic efficacy, and are preferably composed of a synthetic single chain of defined composition. They generally have a molecular weight in the range of about 200 to about 200,000, preferably about 200 to about 50,000 (or less, such as 30,000). Examples of valency platform molecules within the present invention are polymers (or are comprised of polymers) such as polyethylene glycol (PEG), poly-D-lysine, polyvinyl alcohol, polyvinylpyrrollidone, D-glutamic acid and D-lysine (in a ratio of 3:2). Preferred polymers are based on polyethylene glycols (PEGs) having a molecular weight of about 200 to about 8,000. Other molecules that may be conjugated to domain 1 β2GPI polypeptide(s) are albumin and IgG.
Other preferred valency platform molecules suitable for use within the present invention are the chemically-defined, non-polymeric valency platform molecules such as those disclosed in co-owned U.S. Pat. No. 5,552,391. In contrast to previously described, more traditional platforms, these platforms have the advantage of having a homogeneous (i.e., uniform) molecular weight (as opposed to polydisperse molecular weight), and are thus “chemically defined”. Accordingly, it is understood that a population of conjugates using these platforms comprise a platform of homogeneous molecular weight or are substantially monodisperse (i.e., have a narrow molecular weight distribution). A measure of the breadth of distribution of molecular weight of a sample (such as a composition and/or population of platform molecules) of a platform molecule is the polydispersity of the sample. Polydispersity is used as a measure of the molecular weight homogeneity or nonhomogeneity of a polymer sample. Polydispersity is calculated by dividing the weight average molecular weight (Mw) by the number average molecular weight (Mn). The value of Mw/Mn is unity for a perfectly monodisperse polymer. Polydispersity (Mw/Mn) is measured by methods available in the art, such as gel permeation chromatography. The polydispersity (Mw/Mn) of a sample of platform molecules is preferably less than 2, more preferably, less than 1.5, or less than 1.2, less than 1.07, less than 1.02, or, e.g., about 1.05 to 1.5 or about 1.05 to 1.2. Typical polymers generally have a polydispersity of 2-5, or in some cases, 20 or more. Advantages of the low polydispersity property of the valency platform molecules include improved biocompatibility and bioavailability since the molecules are substantially homogeneous in size, and variations in biological activity due to wide variations in molecular weight are minimized. The low polydispersity molecules thus are pharmaceutically optimally formulated and easy to analyze. Further there is controlled valency of the population of molecules in the sample.
Examples of preferred homogeneous chemically-defined valency platform molecules suitable for use within the present invention include derivatized 2,2′-ethylenedioxydiethylamine (EDDA) and triethylene glycol (TEG). Other examples of preferred homogeneous, chemically defined platforms are described below as well as in the art. In other embodiments, a domain 1 β2GPI polypeptide(s) is conjugated to albumin, IgG, and/or PEG.
Additional suitable valency platform molecules include, but are not limited to, tetraaminobenzene, heptaaminobetacyclodextrin, tetraaminopentaerythritol, 1,4,8,11-tetraazacyclotetradecane (Cyclam) and 1,4,7,10-tetraazacyclododecane (Cyclen).
In general, these platforms are made by standard chemical synthesis techniques. PEG must be derivatized and made multivalent, which is accomplished using standard techniques. Some substances suitable for conjugate synthesis, such as PEG, albumin, and IgG are available commercially.
Conjugation of a domain 1 β2GPI polypeptide(s) to a valency platform molecule may be effected in any number of ways, typically involving one or more crosslinking agents and functional groups on the polypeptide and valency platform molecule. Platforms and domain 1 β2GPI polypeptide(s) must have appropriate linking groups. Linking groups are added to platforms using standard synthetic chemistry techniques. Linking groups may be added to a domain 1 β2GPI polypeptide(s) using either standard solid phase synthetic techniques or recombinant techniques. Recombinant approaches may require post-translational modification in order to attach a linker, and such methods are known in the art.
As an example, polypeptides contain amino acid side chain moieties containing functional groups such as amino, carboxyl, or sulfhydryl groups that serve as sites for coupling the polypeptide to the platform. Residues that have such functional groups may be added to the polypeptide if the polypeptide does not already contain these groups. Such residues may be incorporated by solid phase synthesis techniques or recombinant techniques, both of which are well known in the peptide synthesis arts. When the polypeptide has a carbohydrate side chain(s), functional amino, sulfhydryl and/or aldehyde groups may be incorporated therein by conventional chemistry. For instance, primary amino groups may be incorporated by reaction with ethylenediamine in the presence of sodium cyanoborohydride, sulfhydryls may be introduced by reaction of cysteamine dihydrochloride followed by reduction with a standard disulfide reducing agent, while aldehyde groups may be generated following periodate oxidation. In a similar fashion, the valency platform molecule may also be derivatized to contain functional groups if it does not already possess appropriate functional groups.
Polypeptides can also be site specifically modified at their C-termini by a process called reverse proteolysis. Essentially, reverse proteolysis uses proteolytic enzymes to catalyze amide bond fomation by using conditions which drive the reaction in that direction. Polypeptides have been modified using reverse proteolysis to attach hydrazide containing linkers (Rose, K. et al., Bioconjugate Chemistry 1991, 2, 154-159) or aminooxy containing linkers (Rose, K. et al., Bioconjugate Chemistry 1996, 7, 552-556) at their C-termini via amide bonds. Such modified polypeptides can be reacted to form hydrazone or oxime linkages to other molecules of interest which contain aldehyde or ketone groups. In addition other linkers, such as sulfhydryl containing linkers could concieveably be attached via reverse proteolysis.
Hydrophilic linkers of variable lengths are useful for connecting polypeptides (or other bioactive molecules) to valency platform molecules. Suitable linkers include linear oligomers or polymers of ethylene glycol. Such linkers include linkers with the formula R1S(CH2CH2O)nCH2CH2O(CH2)mCO2R2 wherein n=0-200, m=1 or 2, R1=H or a protecting group such as trityl, R2=H or alkyl or aryl, e.g., 4-nitrophenyl ester. These linkers are useful in connecting a molecule containing a thiol reactive group such as haloaceyl, maleiamide, etc., via a thioether to a second molecule which contains an amino group via an amide bond. These linkers are flexible with regard to the order of attachment, i.e., the thioether can be formed first or last.
As discussed above, domain 1 β2GPI polypeptide(s) may be conjugated to any of a number of suitable platforms by any of a number of ways. In a preferred embodiment, the tetra-bromoacetyl platform PIZ/IDA/TEG-β2GPI domain 1 is used. Other preferred embodiments aare in the Examples.
Derivatives of the PIZ/IDA/TEG (PITG) platform can be prepared as shown below.
Examples of Compatible Cross-linking Groups on PITG Platform

































Platform
Domain 1 polypeptide
Conjugate







R = XCH2CO
D1-SH
R′ = D1-SCH2CO










By way of example of a conjugate embodiment, a domain 1 β2GPI polypeptide(s) is prepared with a thiol linker at the N terminus by solid phase peptide synthesis or by recombinant methods. The linker can be cysteine or an SH containing moiety. The modified polypeptide may then be alkylated by a suitably derivatized platform (such as bromoacetyl or iodoacetyl).
In some embodiments, a domain 1 β2GPI polypeptide is conjugated via a sulfhydryl group (thiol, or SH), for example, on a cysteine, resulting in a thioether linkage in the conjugate. In some embodiments, this reactive cysteine is provided by including the fifth cysteine of β2GPI (Example 5).
In some embodiments, conjugates are formed via an oxime linkage. An oxime linkage may be formed by reacting, for example, a carbonyl group such as an aldehyde or ketone on a domain 1 β2GPI polypeptide with a platform that contains an aminooxy reactive group, such as aminooxy, aminooxyacetyl, and aminooxyalkyl. The aminooxy groups can be on triethylene glycol or hexyl chains; however any chain comprising carbon, oxygen, nitrogen or sulfur atoms would suffice as long as is terminates in —ONH2.
To make these conjugates, a domain β2GPI polypeptide is selectively modified to generate an aldehyde or ketone moiety at a specific position on the polypeptide, such as the N terminus. Second, the polypeptide is reacted with a multivalent platform which contains aminooxy groups to form oxime linkages between the platform and the polypeptide.
The N-terminus of the domain 1 β2GPI polypeptide can be converted to an aldehyde or a ketone by a transamination reaction, which is known in the art. Generally, the transamination reaction converts the N-terminal carbon-nitrogen single bond to a carbon oxygen double bond. A glycine at the N-terminus reacts to form a glyoxyl group, an aldehyde. Most other amino acids react to form a ketone by virtue of the amino acid side chain.
Another way to generate an glyoxyl group at the N-terminus is to oxidize an N-terminal serine or threonine with sodium periodate. This oxidation cleaves the carbon-carbon bond between the hydroxyl and amino groups of the N-terminal serine or threonine providing a glyoxyl group.
In some embodiments, multivalent platforms containing aminooxylacetyl (AOA) reactive groups may be produced to connect the selectively modified polypeptides to the platforms. Aminooxylacetyl (AOA) groups can be conveniently attached to multivalent platforms containing amine groups by acylation with a N-protected aminooxyacetyl group followed by protecting group removal. However, reaction of glyoxyl polypeptides with AOA-derivitized platforms proceeds slowly, taking several days to form oxime linkages between the polypeptide and the platform. Example 5 describes synthesis of conjugate compound 44, which entailed attaching a transaminated β2GPI domain 1 polypeptide to a aminoacetylated tetrameric platform. The invention includes this conjugate.
In other embodiments, platforms containing aminooxy alkyl reactive groups may be used. Aminooxyalkyl groups are defined as an aminooxy group on a first carbon, wherein the first carbon is preferably not directly attached to an electron withdrawing group such as a second carbon which is part of a carbonyl group. We have observed that aminooxy alkyl groups react more readily with ketones and aldehydes to form oximes than aminooxyacetyl groups. The aminooxyacetyl group appears to be generally less reactive than other aminooxy groups (aminooxyalkyl groups) which are not adjacent to a carbonyl. The carbonyl of the aminooxyacetyl group is thought to cause a lowering of reactivity due to electron withdrawing effects. More information regarding these platforms and conjugates is found in the Examples and in commonly owned U.S. patent application Ser. No. 09/724,822. Conjugate compound 45, described in Example 5, was synthesized by attaching a transaminated β2GPI domain 1 polypeptide to an aminooxy tetrameric platform. The invention includes this conjugate, as well as those β2GPI domain 1 polypeptide oxime conjugates which arise from AO-based synthesis.
Polynucleotides of the Invention
The invention also provides polynucleotides (including isolated naturally-occuring and non-naturally occurring polynucleotides) encoding a domain 1 β2GPI polypeptide(s). Such polynucleotides are useful for, for example, production of domain 1 β2GPI polypeptide(s). Production of domain 1 β2GPI polypeptide(s) may be effected using standard techniques the art such as recombinant cloning/expression vectors and protein purification methods. If production is to occur in vivo, an appropriate expression system is used, such as those listed below. With knowledge of the amino acid sequence of a domain 1 β2GPI polypeptide(s) (which is obtained using standard protein sequencing techniques), a polynucleotide can be designed which encodes for that particular amino acid sequence. Polynucleotides may be synthesized or obtained (when appropriate) from genomic or cDNA sequences.
The invention also includes cloning vectors and expression vectors containing any of the polynucleotides described above. These vectors are well known in the art (e.g., those for use in vitro, bacterial, mammalian, yeast and insect expression systems) and need not be described herein. See, for example, Gacesa and Ramji, Vectors, John Wiley & Sons (1994).
The invention also includes host cells that contain (i.e., are transformed with, or comprise) any of the polynucleotides and/or vectors described herein. Both prokaryotic and eukaryotic host cells may be used. Prokaryotic hosts include bacterial cells, for example E. coli, B. subtilis, and mycobacteria. Among eukaryotic hosts are fungi (including yeast), insect, avian, plant and mammalian cells. Host systems are known in the art and need not be described in detail herein. The host cells of this invention can be used, inter alia, as repositories of the polynucleotides described above and/or vehicles for production of domain 1 β2GPI polypeptide(s) polynucleotides and/or polypeptides. They may also be used as vehicles for in vivo delivery of domain 1 β2GPI polypeptide(s).
Domain 1 β2GPI Mimetics of the Invention
The invention also provides domain 152GPI mimetics (or analogs), which specifically bind to a β2GPI-dependent antiphospholipid antibody to which a domain 1 β2GPI polypeptide (including entire domain 1) specifically binds (i.e., the mimetic shares an epitope specific for a β2GPI-dependent antiphospholipid antibody with a domain 1 β2GPI polypeptide(s)). Put another way, the mimetic mimics an epitope in domain 1 (i.e., competitively binds to β2GPI-dependent antiphospholipid antibody in the presence of a domain 1 β2GPI polypeptide(s)). The mimetic(s) may be any of a number of chemical substances, as described above. Depending on their chemical nature, mimetics of the invention may be produced using standard techniques in the chemical and biochemical (including biotechnology) arts. These mimetics may be used in detection and/or as toleragens. When used as a toleragen, a mimetic(s) lacks a detectable T cell epitope.
Mimetics of the invention may be identified using conventional techniques. For example, candidate molecules may be screened to determine whether they (a) bind specifically to β2GPI-dependent antiphospholipid antibodies and/or (b) lack T cell epitopes (i.e., fail to elicit a T cell response or T cell-associated activity). Determination of either or both of these activities have been described in the art and herein. Screening of candidate polypeptide mimetics may be accomplished using phage display methods (including micropanning) known in the art (see Example 3). The following is a summary description of some of these techniques.
Various assays have been developed with varying degrees of stringency in order to identify the best epitopes from an epitope library screen. The assays are listed here in order of increasing stringency: Biopanning<Micropanning<Phage-Capture ELISA<Phage ELISA=Colony Blot=Peptide ELISA.
“Biopanning” describes the technique wherein affinity-purified β2GPI-dependent antiphospholipid antibody and phage bearing random peptide inserts are allowed to mix, following which antibody-specific recovery captures the bound phage. The phage confer tetracycline resistance to E. Coli that are propagated in a tetracycline-containing medium and then isolated. Multiple rounds of biopanning enrich the number of immunospecific phage in a sample. Phage are always recovered at the end of three to five rounds of selection but may represent only sequences that are nonspecifically bound at low affinities for the selecting antibodies. A method for further evaluating these phage (micropanning) is required.
Micropanning provides an estimation of the relative strength of binding of the phage to the β2GPI-dependent antiphospholipid antibody. Micropanning is carried out following three or more rounds of biopanning and uses the same antibody as employed in the biopanning method. The method consists of dilution of the phage from the last round of biopanning and analyzing fifty or more of these clones by micropanning. Micropanning is accomplished by growing each clone to a similar density and then incubating dilute phage at an optimal single concentration in microtitration wells previously coated with a constant amount of antibody. The optimal single concentration of phage is that concentration most likely to reveal the widest range of micropanning scores (from 0 to 4+) and, thus, permit the greatest discrimination among the clones being tested. It is based on the micropanning behavior of six randomly selected clones where the score is determined at each of several concentrations of phage obtained by serial dilution. Following the incubation with antibody, the unbound phage are washed away and the amount of bound phage is used as an indication of the affinity of the phage insert for the antibody. The amount of bound phage is determined by elution with mild acid followed by neutralization and infection of E. coli. The number of infected E. coli are then quantitated by plating the microorganisms on agar plates containing tetracycline and then determining colony densities achieved by each clone.
The phage-capture ELISA test was developed to provide an intermediate level assay to bridge the gap between the relatively low stringency of the micropanning assay and the high stringency of the phage- or peptide-ELISA assays. Preliminary studies show that some antibody preparations give too many positive clones by micropanning but none by phage-ELISA or peptide-ELISA. The limitation of the phage-ELISA described below is that only five copies of p-III are located on each phage and even with a large number of phage coated on a well, few copies of the insert are represented and detection requires that the antibody have a very high affinity for the insert. With the phage-capture ELISA, the signal is amplified many times which facilitates the detection of lower affinity, stable interactions between the antibody and the insert.
The phage-capture ELISA consists of the following steps. Microtitration wells are coated with β2GPI-dependent antiphospholipid antibody and phage clones are added as in the micropanning assay. Unbound phage are washed away and the amount of bound phage is quantitated using an enzyme-conjugated goat antiserum which binds the phage. Phage screened using phage-capture ELISA react with many aPL antibodies and provide a strong signal in subsequent ELISA assays. This intermediate level of sensitivity allows for greater efficiency in the peptide synthesis effort since few micropanning-positive phage are phage-capture ELISA positive. As a result, peptides synthesized from positive phage-capture ELISA phage are generally immunoreactive.
Phage-ELISA method of selection requires very tight binding of the insert to the screening antibody. Phage are directly coated onto wells of a microtitration plate and incubated with the screening antibody. Following washes to remove unbound antibody, an anti-human IgG alkaline phosphatase conjugate is added to bind any GPI-dependent antiphospholipid antibodies bound to the phage. β2GPI-dependent antiphospholipid antibodies are then detected by adding a colorimetric substrate to the well which will react with alkaline phosphatase according to methods well known in the art.
Colony blot assay allows large-scale colony screening of E. coli infected by biopanned phage. This procedure is an alternative to phage-ELISA for identifying immunoreactive clones and exhibits a comparable level of sensitivity without requiring culturing of individual phage clones prior to testing. In this assay, E. coli infected with phage from a round of biopanning are spread on a large diameter nitrocellulose (NC) membrane and cultured overnight on the surface of an agar plate containing tetracycline. Barbas et al. (1991) Proc. Natl. Acad. Sci. USA 88:7978-7982. Each colony results from infection by phage containing identical sequences. Several replicate transfer blots on NC are made using this NC “master” and are allowed to grow on the surface of an agar plate. Following the chemical and enzymatic disruption of phage-infected colonies on the blots, the phage may be probed by the techniques commonly used in Western blotting, i.e., staining or immunoblotting. Blots that have been blocked may be incubated with the screening aPL antibody. Following washes to remove unbound antibody, an anti-human IgG horseradish peroxidase conjugate is added to bind to any β2GPI-dependent antiphospholipid-antibody that is bound to phage. The addition of a calorimetric substrate allows one to localize the discrete colonies in the master plate which represent immunospecific phage that may be cloned for further study.
Following DNA sequencing to determine the peptide insert sequences of the best-reacting phage in the assays described above, the corresponding peptides are made using standard Fmoc peptide chemistry as is well known in the art. For the peptide-ELISA assay, the peptides can be made, for example, as branched tetravalent molecules, i.e., each molecule has four copies of the insert. Such a molecule can coat the well of a microtitration plate and still have epitopes exposed to the solution to allow binding by an antibody. The tetravalent peptides are synthesized by incorporating lysines as branch points at the first two couplings analogous to the methods used for Maps, discussed above. Posnett et al. (1988). A spacer consisting of glycine-serine-glycine-serine is added on each arm after the lysines and then the insert, including the framework amino acids found in the phage, proline-glycine at the carboxyl terminus and alanine-glycine-proline at the amino terminus. All amino acids in this synthesis are added one at a time using standard Fmoc methods.
These peptides are then assayed by ELISA which is carried out by coating the peptides on microtitration wells and then assaying their reactivity with aPL antibody in a standard ELISA format. In practice, the peptides usually bind very strongly to the original screening antibody and show some cross-reactivity with other β2GPI-dependent antiphospholipid antibodies. Controls of non-β2GPI-dependent antiphospholipid antibodies are included to eliminate nonspecific binding peptides.
A peptide competitive binding ELISA determines whether two peptides bind the same population of antibodies in a given individual's serum and quantitates relative binding affinity to the β2GPI-dependent antiphospholipid antibodies. In this assay, various monomeric peptides compete with tetravalent peptides coated on a microtitration plate well. To perform the assay, the peptides to be evaluated are synthesized as monomers, i.e., without the lysine branches employed in the synthesis of the tetravalent peptides, using standard Fmoc chemistry. The monomeric peptides are then purified and dissolved at known concentrations. Wells of a microtitration plate are coated with a tetravalent peptide known to bind to the β2GPI-dependent antiphospholipid antibody. Serial dilutions of the monomeric peptides are incubated with a constant dilution of the β2GPI-dependent antiphospholipid antibody. The dilution of the β2GPI-dependent antiphospholipid antibody was previously determined by titering the antibody against the tetravalent peptide and selecting a dilution on the downslope of the titration curve. After incubating the antibody and monomeric peptides for one hour, the antibody/peptide solutions are added to the microtitration wells and a standard calorimetric ELISA is performed. The concentration of each monomeric peptide that decreases binding of the β2GPI-dependent antiphospholipid antibody with the tetravalent peptide is determined by plotting the calorimetric readings obtained for each well. The 50% inhibition point is used as the measure of the relative strength of binding for the monomeric peptides.
A variation of this assay uses microtitration plates coated with β2GP-1/cardiolipin instead of tetravalent peptide and tests the ability of monomeric peptides to block the binding of β2GPI-dependent antiphospholipid antibody to the epitope(s) on β2GPI/CL. In this assay, IgG-depleted human serum at an optimized concentration is used as a source of β2GPI. The monomeric peptides at several concentrations are incubated with an optimized concentration of β2GPI-dependent antiphospholipid antibody in a manner analogous to the assay which employs tetravalent peptide as a plate substrate. Following the incubation of β2GPI-dependent antiphospholipid/peptide in (β2GPI/CL) plates, antibody binding and the peptide concentration required for 50% inhibition is determined at half-maximal absorbance as in the tetravalent assay.
An additional variation of this assay tests the ability of monomeric peptides to block the binding of β2GPI-dependent antiphospholipid antibody to β2GPI coated directly on the wells of Nunc Maxisorp microtitration plates. In this variation, the use of cardiolipin is omitted and instead of fish gelatin, the reagent diluent and blocker used is nonfat milk.
Another variation of this assay tests the ability of multivalent domain 1 β2GPI polypeptide conjugates toleragen molecules or domain 1β2GPI polypeptide monomers to block the binding in serum or plasma of β2GPI-dependent antiphospholipid antibody to β2GPI coated directly on the wells of Nunc Maxisorp microtitration plates. No cardiolipin is employed in the assay. Nonfat milk plus the detergent Tween-80 are used in both the blocking and reagent diluent solutions.
The desired epitope for tolerance induction should have as strong an interaction with as many of the β2 GPI dependent antiphospholipid antibodies as possible but not contain any unnecessary residues. In order to deduce the minimum constitution of an epitope, mimetics of each peptide are made (i) that lack given residues, for example, the framework residues at the carboxyl and/or amino termini are deleted, or (ii) in which amino acid substitutions have been made which differ from sequences found in the epitope library screen. These amino acid substitutions may be either natural, e.g., isoleucine for leucine, or unnatural, e.g., alpha methyl proline for proline. The effect of these deletions and/or substitutions are then measured via peptide-competition ELISA.
The invention also includes conjugates of a mimetic(s), compositions comprising a mimetic(s), kits comprising a mimetic(s), and polynucleotides encoding any polypeptide mimetic(s). How to make and use these embodiments has been described in previous sections, and the principles and techniques presented likewise apply to mimetics.
Compositions of the Invention
The present invention further provides compositions comprising domain 1 β2GPI polypeptides (including all polypeptide embodiments described above, such as fusions, polymeric polypeptides, and conjugates), as well as compositions comprising polynucleotides encoding domain 1 β2GPI and compositions comprising mimetic(s). These compositions are especially useful for administration to those individuals who may benefit from induction of tolerance. The compositions are also useful as reagents in detection systems.
Generally, the compositions of the invention for use in inducing tolerance comprise an effective amount of a domain 1 β2GPI polypeptide(s) (or mimetic(s)), preferably in a pharmaceutically acceptable excipient, and may be in various formulations. As is well known in the art, a pharmaceutically acceptable excipient is a relatively inert substance that facilitates administration of a pharmacologically effective substance. For example, an excipient can give form or consistency, or act as a diluent. Suitable excipients include but are not limited to stabilizing agents, wetting and emulsifying agents, salts for varying osmolarity, encapsulating agents, buffers, and skin penetration enhancers. Excipients as well as formulations for parenteral and nonperenteral drug delivery are set forth in Remington's Pharmaceutical Sciences 19th Ed. Mack Publishing (1995).
Generally, these compositions are formulated for administration by injection (e.g., intraperitoneally, intravenously, subcutaneously, intramuscularly, etc.). Accordingly, these compositions are preferably combined with pharmaceutically acceptable vehicles such as saline, Ringer's solution, dextrose solution, and the like. Generally, the conjugate will normally constitute about 0.01% to 10% by weight of the formulation due to practical, empirical considerations such as solubility and osmolarity. The particular dosage regimen, i.e., dose, timing and repetition, will depend on the particular individual and that individual's medical history. Generally, a dose of about 1 μg to about 100 mg conjugate/kg body weight, preferably about 100 μg to about 10 mg/kg body weight, will be given weekly. Empirical considerations, such as the half life, generally will contribute to determination of the dosage. Other appropriate dosing schedules may be as frequent as daily or 3 doses per week, or one dose per week, or one dose every two to four weeks, or one dose on a monthly or less frequent schedule depending on the individual or the disease state. Repetitive administrations, normally timed according to B cell turnover rates, may be required to achieve and/or maintain a state of humoral anergy. Such repetitive administrations generally involve treatments of about 1 μg to about 10 mg/kg body weight or higher every 30 to 60 days, or sooner, if an increase in antibody GPL score is detected. Alternatively, sustained continuous release formulations of the compositions may be indicated for some pathologies. Various formulations and devices for achieving sustained release are known in the art.
Other formulations include suitable delivery forms known in the art including, but not limited to, carriers such as liposomes. Mahato et a!. (1997) Pharm. Res. 14:853-859. Liposomal preparations include, but are not limited to, cytofectins, multilamellar vesicles and unilamellar vesicles.
In some embodiments, more than one domain 1 β2GPI polypeptide(s) (or mimetic(s)) may be present in a composition. Such compositions may contain at least one, at least two, at least three, at least four, at least five different domain 1 β2GPI polypeptide(s). Such “cocktails”, as they are often denoted in the art, may be particularly useful in treating a broader range of population of individuals. They may also be useful in being more effective than using only one (or fewer than are contained in the cocktail) domain 1 β2GPI polypeptide(s).
The compositions may be administered alone or in conjunction with other forms of agents that serve to enhance and/or complement the effectiveness of a domain 1 β2GPI polypeptide(s), including, but not limited to, anti-helper T cell treatments. Such treatments usually employ agents that suppress T cells such as steroids or cyclosporin.
Appropriate individuals to receive such compositions may be identified using clinical parameters known in the art, such as determination of GPL scores of β2GPI-dependent antiphospholipid antibodies, determination of presence of β2GPI-dependent antiphospholipid antibodies particularly associated with disease state(s), and/or symptoms of β2GPI-dependent antiphospholipid-associated pathologies. Preferably, the individual is human. With respect to β2GPI-dependent antiphospholipid antibody, a GPL score of at least about 10, preferably at least about 20, more preferably at least about 40 may indicate administration of any of these compositions. This score is based on the presently commercially available assay which is a solid phase β2GPI-dependent antiphospholipid antibody ELISA (e.g., Inova (San Diego); Theratest (Chicago); APL Diagnostics (Louisville)). Also indicated for administration of these compositions are those individuals who have a family history of any β2GPI-dependent antiphospholipid antibody-associated disorder (i.e., disease), or those individuals who are considered having a “normal” GPL score but who have displayed an increasing GPL score over a period of time.
Generally, efficacy of administering any of these compositions is adjudged by measuring any change in the clinical parameters described above, particularly the β2GPI-dependent antiphospholipid GPL score. However, measurement of any parameter that is thought or has been shown to be associated with the condition being treated is suitable.
With respect to those compositions which may be used as reagents (such as in detection assays), these compositions generally comprise an amount of a domain 1 β2GPI polypeptide(s) (i.e., one or more polypeptide) sufficient to effect detection. These amounts are readily determined empirically. These compositions may further comprise a substance, such as a buffer, to effect detection. These compositions may also optionally be complexed to a detection matrix, such as solid phase (e.g., in an immunoaffinity column).
Kits Comprising β2GPI Domain 1 Polypeptide(s)
The invention also provides kits containing (i.e., comprising) one or more domain 1 β2GPI polypeptide(s) (or one or more domain 1 β2GPI polypeptide(s) mimetic) and, optionally, antibodies to domain 1 β2GPI polypeptide(s) as a standard, preferably diagnostic kits for detection of β2GPI-dependent antiphospholipid antibody. Diagnostic and monitoring procedures using domain 1 β2GPI polypeptide(s) of this invention can be performed by diagnostic laboratories, experimental laboratories, practitioners, or private individuals. Kits embodied by this invention include those that allow someone to conduct an assay for the presence of antibodies to domain 1 β2GPI polypeptide(s), such as any of those disclosed herein, thus detecting an/or quantitating those antibodies. The kits embodied by this invention also include kits that allow detection of antibodies to domain 12GPI polypeptide(s) in, for example, ex vivo or in vivo transfected cells. Accordingly, the invention includes a kit containing domain 1 β2GPI polypeptide(s) for detection and/or quantification of an anti-domain 1β2GPI polypeptide(s) antibody, preferably a β2GPI-dependent antiphospholipid antibody, in a biological sample. The kits of this invention are in suitable packaging, and may optionally provide additional components that are useful in the procedure. These optional components include, but are not limited to, buffers, capture reagents, developing reagents, labels, reacting surfaces, means for detection, control samples, instructions, and interpretive information.
Any appropriate means for detecting binding of the antibodies may be employed (and provided in the kits) such as a labeled anti-human antibody, when the presence of human β2GPI-dependent antiphospholipid antibodies is tested, wherein the label may be an enzyme, fluorophore, chemiluminescent material radioisotope, coenzyme. Generally, the label used will be an enzyme.
In addition to detecting β2GPI-dependent antiphospholipid antibodies, a 2GPI polypeptide(s) (or one or more domain 1β2GPI polypeptide(s) mimetic) may be a component of a kit for detecting coagulation (clotting). Such a kit would enable detection of a role (if any) of β2GPI-dependent antiphospholipid antibodies in mediating the thrombosis pathway. For example, β2GPI-dependent antiphospholipid antibodies delays the inactivation of activated Factor Va by activated protein C or activate the tissue factor coagulation pathway. We have found that domain 1 specific anti-02GPI antibodies delay the inactivation of Factor Va as discussed in Example 11. A domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) may be useful in discriminating β2GPI-dependent antiphospholipid antibody-mediated effects from other mechanisms influencing the inactivation of Factor Va or the activation of the tissue factor pathway. In addition, domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) may be useful in other functional coagulation (such as thrombosis) assays in which β2GPI-dependent antiphospholipid antibodies or serum or plasma from individuals influences the outcome of the specific coagulation assay. For example, if the presence of a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) alters the outcome of a coagulation assay (when compared to the results of such an assay in the absence of a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)), β2GPI-dependent antiphospholipid antibodies are implicated in the clotting pathway. This information could be especially valuable in assessing potential specific treatments.
Methods Using Domain 1 β2GPI Polypeptides (and Domain 1 β2GPI Polypeptide Mimetics)
The invention also provides methods using a domain 1 β2GPI polypeptide(s) (and/or a domain 1 β2GPI polypeptide mimetic(s)), which are applicable in a detection and/or a therapeutic context. Accordingly, the invention encompasses methods using the β2GPI polypeptide(s) of the invention (and/or domain 1 β2GPI polypeptide mimetic(s) of the invention) to detect suitable targets in a biological sample. Procedures for conducting diagnostic (i.e., detection) tests using polypeptides are extensively known in the art and are routine for a practitioner of ordinary skill. Generally, to perform a diagnostic (i.e., detection) method of this invention, one of the polypeptides or mimetics of this invention (generally as a composition) is provided as a reagent to detect a target with which it reacts in a biological sample. The target is supplied by obtaining a suitable biological sample from an individual for whom the diagnostic parameter is to be measured. If desired, the target may be partially purified from the sample or amplified before the assay is conducted. The invention also provides methods of purifying an β2GPI-dependent antiphospholipid antibody using a polypeptide(s) or mimetic(s) of the invention. The invention also provides methods using the polypeptides polynucleotides, and/or mimetics of this invention to induce tolerance.
Detection of β2GPI-Dependent Antiphospholipid Antibody
In one embodiment, the invention provides methods of detecting an antibody that specifically binds to a domain 1 β2GPI polypeptide(s), preferably a β2GPI-dependent antiphospholipid antibody, in a biological sample. These methods are 1.4 generally applicable in the clinical setting, for example, for diagnosing and/or monitoring β2GPI-dependent antiphospholipid antibody levels in an individual. These methods entail contacting (02GPI-dependent antiphospholipid) antibody in the sample with a domain 12GPI polypeptide(s) (i.e., any polypeptide of this invention) under conditions suitable to allow the formation of a stable complex between anti-domain 1 β2GPI specific antibody (such as an β2GPI-dependent antiphospholipid antibody) and a domain 1 β2GPI polypeptide(s), and detecting a stable complex formed, if any. The domain 1 β2GPI polypeptide(s) of the invention render these methods particularly useful, as no generally convenient or suitable assay for these antibodies has yet been developed. A number of immunoassay methods are known in the art and need not be described in detail. Suitable samples in which to measure β2GPI-dependent antiphospholipid antibody are biological samples, including serum or plasma (preferably serum) and target tissue eluate. It is well understood in the art that detection of a complex formed may be direct (such as by measuring the amount of label associated with a complex) or indirect (such as in measuring the amount of labeled ligand which is displaced during the assay).
To use the polypeptide(s) or mimetic(s) of this invention in the detection of such antibodies in an individual, an immunoassay is conducted. The polypeptide(s) or mimetic(s) is provided as a reagent, and the antibody is the target in the biological sample. For example, human IgG antibody molecules present in a serum sample may be captured with solid-phase protein A, and then overlaid with the labeled polypeptide reagent. The amount of antibody would then be proportional to the label attached to the solid phase. Alternatively, cells or tissue sections expressing the polypeptide may be overlaid first with the test sample containing the antibody, and then with a detecting reagent such as labeled anti-immunoglobulin. The amount of antibody would then be proportional to the label attached to the cells. The amount of antibody detected in the sample would be compared with the amount detected in a control sample.
In the methods of the invention, domain 1 β2GPI polypeptide or mimetic will typically be immobilized, by known techniques, onto a suitable solid phase, such as affinity column packing material, or a plastic surface such as a microtiter plate or a dipstick. Appropriate affinity column packing materials include, for example, a beaded agarose matrix, polyacrylamide, glass, cellulose or cross-linked dextran. Suitable plastic surfaces include polymethacrylate, polystyrene, polyethylene, polyterepthalate, ethylene glycol, polyester, polypropylene, and the like. Generally, any standard microtiter plate may be used. Alternatively, the solid phase may be in the form of a gel or matrix into which the domain 1 β2GPI polypeptide or mimetic is incorporated.
For further illustration, a test sample potentially containing an antibody that specifically binds to a domain 1 β2GPI polypeptide(s) (such as β2GPI-dependent antiphospholipid antibody) can be mixed with a pre-determined non-limiting amount of the domain 1 β2GPI polypeptide(s) which is generally detectably labeled (such as with a radioisotope or enzyme). In a liquid phase assay, unreacted reagents are removed by a separation technique, such as filtration or chromatography. In these immunoassay techniques, the amount of label associated with the complex positively correlates with the amount of β2GPI-dependent antiphospholipid antibody present in the sample. Similar assays can be designed in which β2GPI-dependent antiphospholipid antibody in the test sample compete with labeled antibody for binding to a limiting amount of the domain 1 β2GPI polypeptide(s). Here, the amount of label negatively correlates with the amount of β2GPI-dependent antiphospholipid antibody in the sample.
In some embodiments, the biological sample is a tissue sample, or a tissue eluate, and the amount of β2GPI-dependent antiphospholipid antibody associated with the tissue sample is measured by, for example, a competitive binding assay. These methods may be especially useful in those contexts in which a particular tissue should be tested and/or monitored for presence and/or amount of β2GPI-dependent antiphospholipid antibody. This type of assay may indicate, for example, whether a particular disease (or risk of disease) may be indicated (such as a particular form of thrombosis or clotting disorder). Such an assay may also be useful in providing more precise and sensitive determination of localization of β2GPI-dependent antiphospholipid antibody for diagnostic and/or monitoring purposes. Further, localization information about β2GPI-dependent antiphospholipid may also provide a clinician with indication about suitable treatment options.
It is understood that these detection methods are applicable in a variety of clinical contexts. For instance, detection may be used to identify individuals who show risk of developing β2GPI-dependent antiphospholipid-associated conditions or disorders (which may in turn arise from being able to distinguish antibodies associated with pathology and those not associated with pathology). Detection may also be used to monitor treatment (such as administration of any of the compositions described above). Detection may also assist in distinguishing between pathogenic antibodies from non-pathogenic antibodies. Detection may also assist the clinician in deciding the best treatment options and/or prognosis.
As discussed above, a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) may also be used as a diagnostic component in a coagulation assay, specifically an assay in which β2GPI-dependent antiphospholipid antibodies can modify the outcome of a specific coagulation assay. For example, if the presence of a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) alters the outcome of a coagulation assay (when compared to the results of such an assay in the absence of a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)), β2GPI-dependent antiphospholipid antibodies are implicated in the clotting pathway. Because domain 1 β2GPI polypeptide(s) (and/or mimetic(s)) may be useful in discriminating β2GPI-dependent antiphospholipid antibody-mediated effects from other mechanisms in coagulation (such as thrombosis), the invention includes methods of detecting participation (mediation) of a β2GPI-dependent antiphospholipid antibody in coagulation (such as thrombosis), comprising (a) performing a coagulation assay using a suitable biological sample from an individual, using a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)); (b) performing a coagulation assay using a suitable biological sample from an individual, without using a domain 1 β2GPI polypeptide(s) (and/or mimetic(s)); (c) compare the results of (a) and (b), wherein a difference in result indicates participation of a β2GPI-dependent antiphospholipid antibody in coagulation. These methods can also be used to monitor a patient's status in terms of mediation of an β2GPI-dependent antiphospholipid antibodies in coagulation, as well as initial detection. These methods also indicate, or detect, a coagulation abnormality involving (i.e., mediated by) β2GPI-dependent antiphospholipid antibodies.
For these methods, plasma or serum may be used. Alternatively, the IgG fraction, isolated using standard methods in the art, is used. An example of a coagulation detection system is provided in Example 11. In some embodiments, activated factor V (Va) levels are determined, generally by measuring time to clot. Assays, equipment, and kits to detect coagulation are known in the art and are commercially available.
Purification of β2GPI-dependent antiphospholipid antibodies
The invention also includes methods of purifying an antibody which specifically binds to a domain 1β2GPI polypeptide(s) (such as a β2GPI-dependent antiphospholipid antibody) comprising contacting a biological sample containing β2GPI-dependent antiphospholipid antibody with a domain 1β2GPI polypeptide(s) or a mimetic of a domain 1β2GPI polypeptide(s) under conditions that permit formation of a stable antigen-antibody complex, and obtaining a complex formed, if any. Typically, the domain 1β2GPI polypeptide(s) or mimetic(s) is coupled to an affinity matrix for affinity column purification. Such methods are routine in the art and need not be described in detail herein. Example 1 also describes affinity purification of β2GPI-dependent antiphospholipid antibody.
Methods of Inducing Tolerance
Also included in this invention of methods of inducing tolerance (i.e., a toleragenic state), comprising administering to an individual an effective amount of a domain 1 β2GPI polypeptide(s) (or a polypeptide which comprises a domain 1 β2GPI polypeptide(s)) or a mimetic of a domain 1 β2GPI polypeptide(s), all of which also lack(s) a detectable T cell epitope. Preferably, the domain 1 β2GPI polypeptide(s) (or any polypeptide comprising the domain 1 β2GPI polypeptide(s)) or mimetic(s) is also conjugated to a suitable platform molecule, as described above. It is understood that, for purposes of this invention, that the immune response to be reduced (and/or eliminated, stabilized, and/or rate of increase reduced, via inducing tolerance, is an immune response to β2GPI. Accordingly, the tolerance induced is antigen specific, wherein the antigen is β2GPI, and the tolerance is achieved in an individual who has been determined to have (at least before administration of the polypeptide(s) and/or mimetic(s) of this invention) β2GPI dependent antiphospholipid antibodies.
The appropriate polypeptides of this invention (that is, polypeptides comprising a domain 1 β2GPI polypeptide(s) or mimetic(s) which lacks a T cell epitope) may be used alone or in conjunction with other agents which promote the desired activity/objective. As discussed above, various polypeptides may also be used in various combinations with each other. Various formulations and means of administration have been discussed above.
Determination of whether tolerance has been induced can be achieved by any means known in the art. In general, tolerance is determined by measuring the immune response to a domain 1 β2GPI polypeptide(s). An immune response to a domain 1 β2GPI polypeptide(s) can be measured using standard assays, including, for example, measuring levels of antibody which bind to domain 1 β2GPI polypeptide(s) or mimetic(s); measuring cytokine production following immunization with a domain β2GPI polypeptide(s); performing in vitro analyses of T-cell response to a domain 1 β2GPI polypeptide(s) after administration of a β2GPI polypeptide(s) or mimetic(s) of the invention using T cells from the individual receiving such administration (i.e., an individual with β2GPI-dependent antiphospholipid antibodies), including, for example, standard assays 3H-thymidine uptake to measure proliferation of T cells when presented with a domain 1 β2GPI polypeptide(s) in the context of an antigen-presenting cell, standard 51Cr release assays to measure killing by cytotoxic T-cells of a cell presenting a domain 1 β2GPI polypeptide(s), and the like.
The following examples are provided to illustrate but not limit the present invention.
EXAMPLES
Example 1
Domain 1 of β2GPI is Immunoreactive with β2GPI-Dependent Antiphospholipid Antibodies
Materials and Methods
Construction of Domain Deletion Mutants
β2GPI is comprised of 5 “sushi” domains. To determine the antigenic region(s) of β2GPI, we selectively removed one or more domains from β2GPI. This approach was employed by Igarashi et al ((1996) Blood 87:3262-3270) in which they made deletions of human β2GPI which contained domain 4 and 5, domains 3 through 5, domains 2 through 5, domains 1 through 4, and domains 1 through 3. In addition to the domain deletion mutants described by Igarashi et al., we constructed human β2GPI mutants containing only domains 1 and 2.
The starting point for the construction of these deletion mutants was the full length cDNA of human β2GPI (Steinkasserer et al. (1991) Biochem. J. 277:387-391) cloned into pBacPAK9 (Clontech), a gift from S. Krilis. The initial step was to introduce a GlyHis6 at the C-terminus. In the process, a unique Msc 1 restriction site (TGGCCA) was created by changing the C-terminal Cys codon from TGC to TGT followed by Gly (GGC) and His (CAC). The purpose of the His6 tag was to allow for facile purification of the mutant proteins by Ni chelation chromatography.
The GlyHis6 was introduced by single stranded DNA site directed mutagenesis. The method employed closely followed the published procedures of Kunkel et al. Methods in Enzymology (1987) 154:367-382. When cells containing phagemid pBacPAK9 into which the cDNA for human β2GPI has been inserted were infected by a helper phage, M13K07, the phage particles collected from the growth media predominantly contained a single stranded DNA version of the pBacPAK9. Further, if the cells employed were of the dut 1, ung 1 genotype such as CJ236, some thymidine in the DNA was replaced by uridine. The single stranded DNA was purified from the phage by phenol extraction and ethanol precipitation.
The oligonucleotide, ApoH-G6H, with the sequence 5′ AAACCACCTTAATGGTGATGGTGATGGTGGCCACATGGCTTTACA 3′ (SEQ ID NO: 13) which is complementary to regions on either side of the C-terminal Cys and encodes GlyHis6 was annealed to the single stranded DNA of pBacPAK9 containing the gene for human β2GPI which had been grown in E. coli, CJ236. The method of Kunkel was used to elongate the complementary oligonucleotide resulting in double stranded DNA. The reaction was transformed into E. coli K91. Strain K91 does not contain the dut 1, ung 1 genotype with the result that uridine containing DNA will be degraded. The newly synthesized strand encoding the GlyHis6 should be enriched. Clones were analyzed by DNA sequence using either the T7 sequenase kit or the thermo sequenase kit (Amersham Life Sciences).
The following oligonucleotides were used in the above described manner to generate domain deletion mutants of human β2GPI:
B2del3-60


    5′ GAC ATA CTC TGG GTG TCC GTC CTG CAA TAG C 3′ (SEQ ID NO:14)

B2del3-120

    5′ TGG AGG GCA GAT GAT CCG TCC TGC AAT AGC 3′ (SEQ ID NO: 15)

B2del3-182

    5′ GAA TGG GCA TTT TAC TTC CCG TCC TGC AAT AGC 3′ (SEQ ID NO: 16)

B2del3-242

    5′ AGG TAA TTT ACA AGA TGC CCG TCC TGC AAT AGC 3′ (SEQ ID NO: 17)

B2del242-326

    5′ ATG GTG ATG GTG GCC ACA ACT TGG CAT GGC 3′ (SEQ ID NO:18)

B2del 182-326

    5′ ATG GTG ATG GTG GCC GCA TTC TGG TAA TTT AG 3′ (SEQ ID NO: 19)


The numbers in the oligonucleotides refer to the amino acids of human β2GPI. For example, B2del3-60 refers to amino acids 3-60 being deleted from β2GPI. The resulting protein contains domains 2-5.
A summary of the constructions follows.















Expected protein



Domain(s)
Construction
sequence
SEQ ID NO:







2,3,4,5
B2del3-60
GRTPR
20


3,4,5
B2del3-120
GRIIC
21


4,5
B2del3-182
GREVK
22


5
B2del3-242
GRASC
23


1,2,3,4
B2del242-326
GRTCP
24


1,2,3
B2del182-326
GRTCP
24









PCR was used to generate other mutants. The template for the reaction was the pBacPAK9 containing the cDNA for human β2GPI. The oligonucleotide, pBacPac9 PCR 1270, 1297, which has the sequence 5′ CTA TAA ATA CGG ATC CCG GGA ATT CG 3′ (SEQ ID NO:25) and primes upstream of the multicloning region in pBacPAK9 was used as the 5′ primer. To construct clones with only domain 1, the oligonucleotide Domain 1 PCR (64) Msc1, with the sequence 5′ GCA GCT GGC CAA CTC TGG GTG TAC ATT TCA GAG TG 3′ (SEQ ID NO:26) was used as the 3′ primer. Similarly, to generate a mutant containing domains 1 and 2 the oligonucleotide, Domain 1, 2 PCR (122) Msc 1, with the sequence 5′ GCA GCT GGC CAA TGA TGG GAG CAC AGA GAGOGAA G 3′ (SEQ ID NO:27) was used as the 0.3° primer. Twenty five rounds of PCR were performed. The product was phenol extracted and ethanol precipitated. The fragments were digested at the 5′ end with Bam H1 and Msc 1 at the 3′ end. The digested DNA fragments were gel purified and ligated into pBacPAK9 from which the full length β2GPI had been excised with the same restriction enzymes. The ligations were transformed into E. Coli XL1-blue and clones were characterized by DNA sequencing. The results follow:















Expected protein



Domain(s)
Construction
sequence
SEQ ID NO:







1
B2del165-326
GRTCP
24


1,2
B2del123-326
GRTCP
24









All deletion mutants of β2GPI were purified from the media of infected insect cells. In general, cells were removed by centrifugation and the media dialyzed against at least 10 volumes of phosphate buffered saline (PBS; 137 mM NaCl, 2.7 mM KCl, 4.3 mM Na2HPO4. 7H2O, 1.4 mM KH2PO4) for 18 hours at 4° C. The next day, any precipitate was removed by centrifugation. The dialyzed media was made 50 mM NaPO4, pH 7.5, 0.5 M NaCl and Ni-NTA resin was added to the dialyzed media with gentle mixing. After 1 hour at 4° C., the resin was collected with a Buchner funnel and packed into a water jacketed column kept at 4 degrees. The column was washed extensively with 50 mM NaPO4 pH7.5, 0.5 M NaCl until no protein was detectable. The column was eluted sequentially with the same buffer containing 20 mM, 35 mM or 100 mM imidazole. Analysis was by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS PAGE). Appropriate fractions were pooled and protein was concentrated and dialyzed against Tris-buffered-saline (TBS; 50 mM TrisCl pH 7.5, 150 mM NaCl).
Affinity Purified β2GPI-Dependent Antiphospholipid Antibodies
To isolate β2GPI-dependent antiphospholipid antibodies, multilamellar, cardiolipin-containing lipid dispersions (also containing cholesterol and dicetylphosphate) are incubated with β2GPI-dependent antiphospholipid plasma (or serum). These liposomes are pelleted from the serum by centrifugation. After washing, the liposome mixture is disrupted by 2% octylglucoside detergent and applied to a protein A-agarose column. Following extensive washings to first remove lipids and then to remove non-IgG components, IgG 2GPI-dependent antiphospholipid antibody is eluted from protein A with mild acid, neutralized, buffer-exchanged, and tested in the ACA ELISA. This procedure yields aPL antibody enriched up to 10,000-fold that is devoid of any contaminating β2-GPI as shown by Western blotting with rabbit IgG anti-human β2-GPI antisera. A specific example of this procedure follows.
β2GPI-Dependent Antiphospholipid Antibody Purification From Serum
Antibodies from various patients was purified from serum from patients of various ages exhibiting various symptoms including: SLE, APS (including various manifestations of APS, including venous thrombosis, miscarriage, thrombocytopenia, CVA (cerebrovascular accident, i.e., stroke), TIA (transient ischemic attacks)), and arterial occlusion).
In a 25 mL round-bottom flask (Kontes Scientific Co., Vineland, N.J.) a mixture of 1.2 mL cardiolipin (Sigma Chemical, St. Louis, Mo., #C-1649), 0.464 mL cholesterol (Sigma Diag., St. Louis, Mo., #965-25), 0.088 mL of 5 mg dicetylphosphate (Sigma Chemical, St. Louis, Mo., D-263 1) per mL chloroform was dried for approximately 5 minutes in a Rotavap (Buchi, Switzerland). Following the removal of solvent, 2 mL of 0.96,% (wt./vol.) NaCl (J. T. Baker, Inc., Phillipsburg, N.J.) was added and mixed in a Vortex Genie Mixer (Scientific Industries, Inc., Bohemia, N.Y.) for 11 minutes. The liposome suspension was incubated for 1 hour at 37° C. Meanwhile, serum 6501 was spun at 600×g in a Sorvall RT 6000 centrifuge (Dupont Co. Wilmington, Del.) for 10 minutes at 8° C. Four mL of the supernatant was placed in a 25 mL round-bottom flask with 1 mL of the prepared liposome suspension and the mixture was incubated with agitation at medium speed in an orbital shaker, Tektator V (Scientific Products, McGraw Park, Ill.) for 48 hours at 4° C., and an additional 2 hours at 37° C. Twenty mL of cold TBS was added and the mixture was transferred into a 50 mL polycarbonate centrifuge tube (Nalge Co., Rochester, N.Y.) and centrifuged at 27,000×g for 15 minutes at 4° C. in an RC3 centrifuge in a SS-34 rotor (Sorvall-Dupont, Wilmington, Del.). The precipitate was washed 3 times with 25 mL of cold 0.96% NaCl using the RC3 centrifuge. The pellet was dissolved in 1 mL of 2% (wt/vol) solution of n-octyl-β-D-glucopyranoside (Calbiochem, La Jolla, Calif.) in TBS and applied to a 0.6 mL protein A/crosslinked agarose (Repligen Corporation, Cambridge, Mass.) column which had been pre-washed with 15 times bed volume of 1 M acetic acid and equilibrated with 15 times bed volumes of TBS. The antibody-protein A/agarose column was washed with 40 times bed volume of 2% octylglucopyranoside to remove lipids, followed by extensive washings with TBS until the optical density of the eluate at 280 nm approached the baseline. The bound antibody was eluted with 1 M acetic acid. One mL fractions were collected, neutralized immediately with 0.34 mL 3M Tris (Bio-Rad, electrophoresis grade) per fraction and kept in an ice bath. The optical density of each fraction was determined at 280 nm in a spectrophotometer (Hewlett-Packard, 8452A Diode Array Spectrophotometer, Palo Alto, Calif.). Fractions containing antibody were pooled, concentrated and washed 4 times with TBS in Centricon-30 concentrators (Amicon Division, W. R. Grace & Co., Beverly, Mass.) per manufacturer's protocol. The final yield of purified antibody from 4 mL of serum 6501 was determined by reading the optical density at 280 run of an aliquot from the concentration, where 1 mg=1.34 A280mm. The average yield obtained was 750 μg antibody from 4 mL of serum 6501. The purified antibody was tested for ACA activity and checked for purity with Laemmli SDS-PAGE.
Cardiolipin Based ELISA
Microtiter plates (Immulon 1 #3350 from Dynex Technologies) were coated with 30 μl of a 50 μg/ml solution of cardiolipin in ethanol, dried overnight at 4° C., washed three times with PBS, pH 7.2, and blocked for one hour at room temperature with 75 μl of 5% (wt/v) fish gelatin, (Hipure Liquid Gelatin, Norland Products Inc. 695 Joyce Kilmer Ave., New Brunswick N.J., USA). The plates were washed three times with PBS, charged with 50 μl of full length recombinant β2GPI at 10 μg/ml in 5% fish gelatin and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of either affinity purified β2GPI-dependent antiphospholipid antibodies (the concentration of each antibody used is shown in Table 2, or rabbit anti-02GPI was added to each well and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 pd of alkaline phosphatase conjugated anti-immunoglobulin (anti-human IgG, gamma chain specific, Zymed #62-8422 or anti-rabbit IgG, Zymed #362-61220 diluted appropriately in 5% fish gelatin was added and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase chromogenic substrate was added (PPMP solution; 7.8 g phenolphthalein monophosphate plus 69.5 g of 2-amino-2-methyl-1-propanol in 100 mL water stock solution diluted 1:26 with water immediately before use) and incubated for 30 minutes, at room temperature. The optical density, at 550 nm, was determined by reading the plates in a microplate autoreader (Bio-Teck Instruments, model EL311).
Competitive Inhibition ELISA
Microtiter plates (MaxiSorpTM, Nalge Nunc International, Denmark) were coated with 50 μl of full length recombinant β2GPI at 10 μg/ml in 0.1 M bicarbonate, pH 9.5, incubated overnight at 4° C., washed three times with 0.15 M PBS, pH 7.2, and blocked for one hour at room temperature with 75 μl of 2% Non-fat Dried Milk (Carnation, 2% NFDM). Test inhibitors were diluted in 2% NFDM and 25 μl of each dilution was added to coated wells. Affinity purified β2GPI-dependent antiphospholipid antibody was diluted in 2% NFDM and 25 μl, of a constant concentration, was added to the wells, including a group of wells that had no inhibitor, which acted as the positive controls. The contents of the wells were mixed and the plates were incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase conjugated anti-human IgG, gamma chain specific, (Zymed #62-8422) diluted appropriately in 2% NFDM was added and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase PPMP chromogenic substrate solution was added and incubated for 30 minutes, at room temperature. The Optical Density, at 550 nm, was determined by reading the plates in a microplate autoreader (Bio-Teck Instruments, model EL3 11). The percent inhibition was determined by dividing the OD550 obtained in the presence of inhibitor by the mean OD550 obtained from the wells without inhibitor and then multiplying by 100 (more particularly, [mean A550 obtained from control wells without inhibitor less A550 of background] minus [A550 obtained in presence of inhibitor less A550 of background] divided by [mean A550 obtained from control wells without inhibitor less A550 of background] times 100).
Direct Binding of Recombinant β2GPI and Mutants, Assessed by ELISA
Nickel Chelate-coated microwell plates (NCP 010 00 Xenopore Corp. 374 Midland Ave. Saddle Brook, N.J. USA) were coated with 50 μl of serial dilutions of the various recombinant β2GPI, in PBS, at room temperature for 2 hours. The plates were washed three times with PBS and blocked with 75 μl of a 1% gelatin (Sigma #G-2500) in PBS for one hour room temperature. The plates were washed three times with PBS, 50 μl of either affinity purified β2GPI-dependent antiphospholipid antibody (at a concentration that had previously been shown to give about 80% of maximum binding) or rabbit anti-β2GPI was added and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase conjugated anti-immunoglobulin (anti-human IgG, gamma chain specific, Zymed #62-8422) or anti-rabbit IgG (Zymed #62-6122) diluted appropriately in 1% gelatin was added and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase PPMP chromogenic substrate solution was added and incubated for 30 minutes at room temperature. The optical density, at 550 nm, was determined by reading the plates in a microplate autoreader (Bio-Teck Instruments, model EL311).
Results of Inhibition Studies
Seven to nine different recombinant β2GPI mutant proteins were used to determine the antigenic specificity of affinity purified β2GPI-dependent antiphospholipid antibody preparations from 13 different patients. Each mutant recombinant β2GPI protein was tested, in a dose dependent fashion, for its ability to inhibit affinity purified β2GPI-dependent antiphospholipid antibody from binding to full length recombinant β2GPI. The results from a typical assay are shown in FIG. 4. The results from assays of all 13 affinity purified β2GPI-dependent antiphospholipid antibodies are summarized in Table 2. The following values were also observed for domain 1 only recombinant protein (1 - - - - ; see Table 2 for designations):
Ab 6203, Max 20, 50%>10; Ab 7008, Max 40, 50%>10; Ab 6501, Max 30, 50%>10; Ab 6626, Max 50, 50%>10; Ab 6632, Max 70, 50% 3; Ab 6644, Max 45, 50%>10; Ab 7015, Max 30, 50%>10; Ab 7101, Max 20, 50%>10; Ab 6701, Max 80, 50% 4; Ab 6641, Max 98, 50%>10.
Only those mutants that contained domain 1 inhibited the β2GPI-dependent antiphospholipid antibodies from binding to the full length recombinant β2GPI (FIG. 14). This was true for all 13 β2GPI-dependent antiphospholipid antibody preparations (Table 2). The fact that all of the recombinant mutant β2GPI proteins that contain domain 1 inhibited greater than 90% indicates that all of the detectable anti-β2GPI activity of these antibodies is directed against domain 1.







TABLE 2







Summary of data from competitive inhibition assays using 13 different β2GPI-dependent antiphospholipid


antibody preparations


versus nine recombinant β2GPI proteins.


Max = maximum inhibition observed at concentrations tested. 50% = concentration (μM) to give 50% inhibition.

















12345
1----
12---
123--
1234-
-2345
--345
---45
----5

























Ab#
Max
50%
Max
50%
Max
50%
Max
50%
Max
50%
Max
50%
Max
50%
Max
50%
Max
50%






























7104
90
0.8
90
0
0.8

90
1
98
1
90
0.7
10
>57
20
>50
5
>40
0
>47


6203
75
0.8
60
(20)
>10

20
>10
75
1
30
>8
10
>57
10
>50
10
>40
5
>47


7008
90
0.2
70
(40)
>10

40
>10
80
0.4
50
>8
20
>57
20
>50
20
>40
20
>47


6501
80
0.2
70
(30)
30
(>10)
30
>10
85
0.8
30
>8
20
>57
15
>50
15
>40
10
>47


6626
80
0.3
85
(50)
8
(>10)
50
>10
90
0.8
40
>8
18
>57
20
>50
15
>40
10
>47


6632
90
0.8
90
(70)
8
 (3)
70
3
90
0.2
60
2
20
>57
20
>50
20
>40
10
>47


6644
90
0.2
90
(45)
8
(>10)
45
>10
90
0.7
50
8
10
>57
10
>50
10
>40
10
>47


7015
90
0.2
90
(30)
8
(>10)
30
>10
90
0.7
50
8
10
>57
10
>50
10
>40
10
>47


7101
80
0.8
70
(20)
8
(>10)
20
>10
70
3
20
>8
5
>57
5
>50
5
>40
5
>47


6652
95
0.8
ND

ND

ND
ND
95
0.3
100
0.5
40
>16
30
>15
20
>5
15
>47


6509
70
0.1
ND

ND

ND
ND
90
0.3
80
3
20
>16
20
>15
20
>5
10
>47


6701
100
0.1
ND
(80)
ND
 (4)
ND
ND
95
0.3
30
>8
10
>16
20
>15
15
>5
10
>47


6641
96
0.1
ND
(98)
ND
(>10)
ND
ND
60
4
60
2
20
>16
10
>15
20
>5
10
>47









Results of Testing Direct Binding of Recombinant Mutant 62GPI Proteins by β2GPI-Dependent Antiphospholipid Antibodies in the Absence of Cardiolipin
Seven to nine different recombinant β2GPI mutant proteins were examined to determine if they could support the direct binding of affinity purified β2GPI-dependent antiphospholipid antibody preparations in the absence of anionic phospholipid. All recombinant mutant β2GPI were assayed with affinity purified β2GPI-dependent antiphospholipid antibody preparations from 11 different patients. Each mutant recombinant β2GPI protein was tested, in a dose dependent fashion and GST-6his was included as a negative control. The recombinant mutant β2GPI proteins were bound to nickel coated microtiter plates via their 6-his tail. All recombinant mutant β2GPI proteins tested bound rabbit anti-β2GPI showing that they were assessable by antibody (FIG. 5). The results from a typical binding experiment show that only those proteins containing domain 1 bound affinity purified β2GPI-dependent antiphospholipid antibody (FIG. 6). The results from assays of all 11 affinity purified β2GPI dependent antiphospholipid antibodies is summarized in Table 3. The results show that all patients' antibodies bound significantly to domain 1 containing β2GPI recombinant proteins, while there was little, if any, specific binding to recombinant proteins lacking domain 1.







TABLE 3







Direct binding assays using nickel chelated wells charged with indicated


recombinant


deletion-mutant β2GPI protein versus 8 different β2GPI-dependent


antiphospholipid antibody preparations


Maximum O.D. for each deletion-mutant:antibody combination
















Ab#
12345
1----
12---
123--
1234-
-2345
--345
---45
----5



















6501
1.772
0.911
0.028
0.909
0.628
0.018
0.030
0.086
0.004


6626
1.527
0.560
0.073
1.250
0.563
0.008
0.022
0.086
0.028


6652
0.640
0.262
ND
0.320
0.135
0.008
0.016
0.013
0.012


6632
1.419
0.351
0.016
0.121
0.003
0.031
0.004
0.000
0.013


7008
1.380
0.195
0.008
0.360
0.149
0.019
0.018
0.030
0.007


6701
0.948
0.388
ND
0.841
0.715
0.002
0.002
0.000
0.000


6203
1.270
1.029
0.119
0.938
0.668
0.074
0.072
0.142
0.044


7015
1.864
1.102
0.063
1.160
0.454
0.114
0.042
0.167
0.078


6641
2.555
0.252
—
0.530
0.145
0.045
0.019
0.112
0.018


6644
1.848
0.493
—
1.020
0.768
0.041
0.048
0.I51
0.017


7101
1.257
0.804
—
0.951
0.843
0.056
0.042
0.167
0.078


Rabbit
2.065
1.9737
—
1.971
1.708
1.873
1.993
1.941
1.663









Direct Binding of Recombinant Mutant β2GPI Proteins by β2GPI-Dependent Antiphospholipid Antibodies in the Presence of Cardiolipin

Seven different recombinant β2GPI mutant proteins were examined to determine if they could support the direct binding of affinity purified β2GPI-dependent antiphospholipid antibody preparations in the presence of anionic phospholipid. All seven recombinant mutant β2GPI were assayed with rabbit anti-β2GPI and with an affinity purified β2GPI-dependent antiphospholipid antibody preparation. Each mutant recombinant β2GPI protein was tested, in a dose dependent fashion and GST-6his was included as a negative control. The recombinant mutant β2GPI proteins were bound to microtiter plates that had previously been coated with cardiolipin. All seven recombinant mutant β2GPI proteins bound rabbit anti-β2GPI showing that they bound to cardiolipin and that they were assessable to antibody (FIG. 7). The results from a typical experiment with patient antibodies show that only those proteins containing both domain 1 and domain 5 bound affinity purified β2GPI-dependent antiphospholipid antibody (FIG. 8).
Based on the above data in this example, we believe that under certain conditions β2GPI is bound to solid phase supports in such a way (such as irradiated plates, cardiolipin coated plates, Nunc brand microtiter plates and nickel chelated plates in the case of the recombinant β2GPI proteins that contain a 6-his tail) as to allow the antigenic epitope(s) on domain 1, to be freely accessible to β2GPI-dependent antiphospholipid antibodies, but not when it is bound to other surfaces such as non-irradiated plates, many other brands of microtiter plates. These inhibition studies confirms reports by others that β2GPI-dependent antiphospholipid can bind β2GPI in the absence of phospholipid. Galli et al. (1990) Lancet 335:1544; Rouby et al (1995); Arvieux et al. (1991) J. Immunol. Methods 143:223. The same five recombinant mutant β2GPI's that inhibit in the competitive inhibition assay—those that contain domain 1—are the same as those that bind β2GPI dependent antiphospholipid antibody on the nickel chelated plates. Recombinant β2GPI mutant proteins bound to the nickel chelated plates was confirmed by the ability of the rabbit (anti-β2GPI to bind to all nine recombinant proteins. In contrast, only the full length recombinant β2GPI (that is, the only recombinant protein tested that contains both domain 1 and domain 5) could be readily detected on cardiolipin coated plates. Recombinant β2GPI mutant proteins bound to the cardiolipin coated plates was confirmed by the ability of the rabbit anti-β2GPI to bind to all nine recombinant proteins.
Both the inhibition data (FIG. 4) and the direct binding, via nickel coated plates, data (FIG. 6) clearly show that the antigenic specificity of the 13 β2GPI-dependent antiphospholipid antibody preparations studied are directed towards an epitope that is in domain 1 of β2GPI.
Example 2
Specificity of Antibodies From APS Patients
Localization of the epitope binding region in the studies described in the previous Example relied on the use of affinity purified antibodies from high titer APS patients. Affinity purification of APS antibodies requires high titer patients and does not readily lend itself to studying lower titer patients or large populations of patients. Therefore, we developed an alternative approach to evaluate the antibody binding domain(s) in APS patient samples that is serum based and is amenable to evaluating a larger number of patients.
Surface plasmon resonance (SPR) provides a quantitative measurement of the interaction between immobilized protein and a soluble analyte. The current studies applied SPR to measure the interaction between immobilized β2-GPI and domain deletion mutants of β2-GPI with human plasma from a cohort of normal and APS patients. The studies were designed to determine if the immunodominance of β2-GPI domain 1 could be generalized to the larger population of APS patients.
Materials and Methods
Reagents. CM5 chips, NHS and EDC and HBS-EP buffer were from BIAcore. Human haptoglobin (phenotyope 1—1), a protein containing the short consensus repeat motif found in β2GPI, was immobilized in a separate flow cell on the chip and used as a negative control. Recombinant β2GPI and domain-deletion mutants of β2GPI were expressed in Tn5 cells using the baculovirus protein expression system and purified from the supernatants by nickel-chelation affinity column. Iverson et al. (1998) Proc. Natl. Acad. Sci. USA 95:15542-15546. Normal human plasma samples were purchased (George King Biomedical) or obtained in-house. Patient plasma samples from individuals diagnosed with either primary or secondary (to lupus) antiphospholipid antibody syndrome were obtained from a number of clinical sources.
The 55 controls used in this study were derived from a heterogenous sample. Thirty control samples (15 male; 15 female; mean age 34 yrs, range 19-45 yrs) purchased from George King Bio-Medical (Overland Park, Kans.), 5 local volunteers (3 male, 2 female), 2 pooled commercial sources and 18 blood bank donors of unknown origin were included in the analysis. The patient samples were collected from several sources and included patients with histories of venous thrombosis, arterial occlusions, cerebrovascular occlusions, multiple miscarriages and thrombocytopenia. All patients included in the study had IgG antiphospholipid antibody level (GPL) levels>20 by internal assay.
Total IgG fraction was isolated from plasma using Immunopure Plus protein G agarose beads and Immunopure IgG binding and elution buffers according to the manufacturers recommendation (Pierce).
Surface Plasmon Resonance. All experiments were performed using a BIAcoreTM 2000 instrument at 25° C. with a flow rate of 10 μL/minute. Chip equilibration and binding studies were performed with degassed HBS-EP buffer, which consists of 0.01 M HEPES pH 7.4, 0.15 M NaCl, 3 mM EDTA and 0.005% (v/v) surfactant P20. Covalent coupling of protein ligands through their free amino groups to the CM5 chip was accomplished by flowing 40 μL of 0.05 M NHS/0.2M EDC over the chip to activate the chip, followed by exposure to the appropriate protein ligand. Recombinant β2GPI(His)6, domain-deletion mutants of β2GPI and haptoglobin were immobilized by flowing 50 μL of a 25 μg/mL solution in 10 mM acetate, (pH 4.8) over the NHS-activated CM5 chip. The excess reactive groups on the chip surface are then quenched with 40 μL of 1 M ethanoloamine, (pH 8.5). Human plasma samples (130 μL) were diluted 1:1 with HBS-EP, flowed over the β2GPI chip, and response values were collected for 780 seconds. The chips were regenerated between sample exposures with 80 μL of 0.1 M glycine-HCl (pH 2.1), 0.1 M NaCl. Since the approach to binding equilibrium was incomplete during the measurement period, the equilibrium binding value (Req) was determined by fitting the association curves to the following equation using the manufacturers software (BiaEvaluation version 2.2, Uppsala, Sweden)

Rt=Req(I−e−ks(t−t0))+R0 

where Rt is the measured BIAcore response at time t, Req is the equilibrium plateau response, t is time, t0 is initial time, k, is an apparent association constant (ks=kaC+kdis, where ka is the association constant, C is the analyte concentration and kdis is the dissociation constant), and R0 is a response offset. In some experiments total IgG fractions from human plasma samples were obtained from binding to and acid elution from protein G. The plasma remaining after binding to protein G was remixed with fresh protein G beads and isolated as IgG-stripped plasma. Neutralized IgG preparations and IgG-stripped plasma diluted 1:1 with buffer were flowed over the β2GPI chip as described above.

Results and Discussion

Recombinant human β2-GPI-containing domains 1-5, 2-5, and domain 1 alone were cloned into bacluovirus expression vectors and expressed in TN5 cells. Aliquots of purified proteins were analyzed and quantitated by amino acid analysis. Each protein contained a single amino terminal and internal standards permitted accurate quantitation based on amino acid analysis.
The APS patient cohort was obtained from multiple centers and consisted of 106 patients with GPL≧20 that had been diagnosed with symptoms of antiphospholipid antibody syndrome (APS). Patient histories were not complete, but available histories included venous thrombosis, arterial thrombosis, cerebrovascular accidents, multiple miscarriages, premature deliveries and thrombocytopenia. GPL values ranged from 20-807 (413+161, mean±SD) with a median value of 77. The normal control population consisted of 55 samples obtained from internal donors, commercial sources or the San Diego blood bank.
Serum from APS patients and controls was diluted 1:1 in buffer and evaluated for binding to immobilized β2-GPI(D1-5). The magnitude of the interaction with β2-GPI(D1-5) is shown in Table 4. The mean Req for β2-GPI(D1-5) was 730 and 328 with a median value of 635 and 201 for the 106 APS patients and 55 control patients, respectively. The difference between the patients and the control group was statistically significant (p<0.01, Student's t-test). The magnitude of the interaction of APS and control serum with β2-GPI(D2-5) was not different between these groups (Table 4).







TABLE 4







Binding of Serum from patients










Patients (GPL ≧ 20)
Controls















Number of subjects
106
55



ReqD1-5 (mean ± sem)
730 ± 42
328 ± 52



ReqD2-5 (mean ± sem)
158 ± 36
160 ± 26



Median ReqD1-5
635
201



Median ReqD2-5
24
103



% D1 selective
88%
12%










A selectivity ratio was calculated to describe the relative binding of serum samples to β2-GPI domain deletion mutants that differ only by the presence of domain 1. This selectivity ratio was calculated by dividing the binding (Req) to β2-GPI(D1-5) by binding to β2-GPI(D2-5). A factor of 3 or greater was arbitrarily selected to define those patients exhibiting preferential interaction with the native protein containing domain 1. The magnitude of interaction with both β2-GPI(D1-5) and β2-GPI(D2-5) was low in the control group and the majority of the control patients exhibited no selectivity for either immobilized protein (Table 4). In contrast, 88% of the APS patients exhibited≧3-fold selectivity for β2-GPI containing domain 1. Forty-one percent (43/106) of the APS patients had negligible interaction with β2-GPI(D2-5) (Req<9), resulting in very high selectivity ratios.
Serum from 10 patients with selectivity ratios 3 were further characterized to determine if the interactions observed in the serum could be attributed to the IgG fraction. The binding interactions of whole plasma, IgG stripped plasma and total IgG with β2-GPI(D1-5) is shown in Table 5. Removing the IgG from serum with protein G removed essentially all of the specific binding interactions with the immobilized proteins. The IgG fraction was acid eluted from the protein G fraction and tested for interaction with the proteins (denoted “Total IgG” in Table 5; subsequent neutralization diluted the IgG fraction by 50% relative to the whole plasma and IgG-stripped plasma). The IgG fraction only showed interaction with β2-GPI(D1-5) and produced responses that were similar in magnitude to the original serum interaction with β2-GPI(D1-5) (note the dilution difference). Thus, the binding of domain 1 selective patient serum to β2-GPI can be accounted for by the IgG fraction this assay system.







TABLE 5







BIAcore Req Values for “D1-Selective” APS Patient


Plasma Samples











Whole Plasma
IgG-stripped
Total IgG



(1:2)
Plasma (1:2)
(1:4)













Patient
(d2-5)
(d1-5)
(d2-5)
(d1-5)
(d2-5)
(d1-5)
















6501
333
1526
0
0
0
732


6701
199
952
0
0
0
460


6626
37
1622
0
49
0
1132


6515
259
1024
0
0
0
440


6207
19
1450
0
0
0
480


6642
8
811
0
48
0
480


7015
158
2092
0
0
0
864


6703
65
1001
0
0
0
556


6601
84
792
0
0
0
266


7201
0
603
0
0
0
292









A subgroup of the non-selective APS patients (selectivity ratio<3) were further evaluated to determine if their binding could be attributable to the IgG fraction. The results are shown in Table 6. As in the case of the domain 1 selective patients, all of the interaction with either immobilized protein could be removed by treating the serum with protein G to deplete the IgG fraction. The IgG fraction from patients appeared to reflect the binding observed in the original serum sample (Table 6).







TABLE 6







BIAcore Req Values for “Non-selective” APS Patient


Plasma Samples











Whole Plasma
IgG-stripped
Total IgG



(1:2)
Plasma (1:2)
(1:4)













Patient
(d2-5)
(d1-5)
(d2-5)
(d1-5)
(d2-5)
(d1-5)
















6117
386
324
0
0
79
120


6194
3197
2046
0
0
688
470


6649
553
758
0
0
127
253


6627
549
324
0
0
182
132


7013
167
241
0
0
75
115


6611
1002
892
0
0
177
251









The present study employed surface plasmon resonance to localize the antibody binding domain in a large, cross-sectional population of APS patients (n=106; GPL≧20). APS patient serum exhibited significantly greater binding to β2-GPI than non-APS controls. In addition, the majority of patients' sera bound native β2-GPI(D1-5) to a greater extent than a domain deletion mutant of β2-GPI containing all domains except domain 1. Eighty eight percent of patients showed three or more fold specificity for β2-GPI containing domain 1 relative to a domain deletion mutant that lacked domain 1. The domain 1 binding activity in APS patient serum was completely removed by depletion of the IgG component and the binding activity could be fully reconstituted in the IgG fraction. These results indicate that the immundominant binding epitopes in the majority of APS patients are localized to the amino terminal domain of β2-GPI.
Example 3
Testing Domain 1 Fragments for Immunoreactivity to β2GPI-Dependent Antiphospholipid Antibodies
Hexapeptide Synthesis
N-α-Fmoc protected amino acid attached to Wang resin was suspended twice (5 in 20% piperidine in dimethylformamide (DMF) for a total reaction time of 30 minutes to deprotect the amine. Hexapeptides with C-terminal proline were made with unprotected proline attached to chlorotrityl resin instead of Wang resin to prevent diketopiperazine formation.
The resin was rinsed two times each with DMF and methyl alcohol. A solution of N-hydroxybenzotriazole (6 equiv.), 1,3-diisopropylcarbodiimide (6 equiv.), and the second amino acid (6 equiv.) plus indicator in DMF was added to the resin. The reaction mixture was agitated for a minimum of 1.5 hours at room temperature. The resin was then rinsed two times each with DMF and methyl alcohol. The Kaiser test (2 drops 5% ninhydrin in ethyl alcohol+1 drop pyridine+1 drop 80% phenol in ethyl alcohol) was performed on a small portion of the rinsed resin to verify the absence of free amine.
The deprotection and amino acid addition steps were repeated to finish the sequence. The final amino acid was deprotected as above to yield the free amine.
The peptides were cleaved from the resin with a solution of 7.5% (by wt.) phenol, 2.5% (by vol.) ethanedithiol, 5.0% (by vol.) water, and 5.0% (by vol.) thioanisole in trifluoroacetic acid (TFA). The mixture was agitated for a minimum of three hours. The TFA was removed using vacuum and the peptide precipitated and washed twice with ether. The solid was dissolved in 1:1 acetonitrile/water for analysis. The peptides were characterized by LCMS on a 1.0×150 mm C18 (5μ, 150 Å) column (A: 0.1% TFA, 2% acetonitrile in water; B:0.08% TFA, 2% water in acetonitrile).
The acetonitrile and water were removed under vacuum or by lyophilization and the peptides were stored at 0° C.
Peptides showing activity were remade on a larger scale and purified using on a C18 column (A: 0.1% TFA in water; B: 0.08% TFA in Acetonitrile).
Competitive Inhibition ELISA
Microtiter plates (MaxiSorpTM, Nalge Nunc International, Denmark) were coated with 50 pi of full length recombinant β2GPI at 10 μg/ml in 0.1 M bicarbonate, pH 9.5, incubated overnight at 4° C., washed three times with 0.15 M PBS, pH 7.2, and blocked for one hour at room temperature with 75 μl of 2% Non-fat Dried Milk (Carnation, 2% NFDM). Test inhibitors were diluted in 2% NFDM and 25 μl of each dilution was added to coated wells. Affinity purified β2GPI-dependent antiphospholipid antibody was diluted in 2% NFDM and 25 μl, of a constant concentration, was added to the wells, including a group of 11 wells that had no inhibitor, which acted as the positive controls. The contents of the wells were mixed and the plates were incubated at 37° C. for one hour. The plates were washed three times with PBS and 50 p! of alkaline phosphatase conjugated anti-human IgG, gamma chain specific, (Zymed #62-8422) diluted appropriately in 2% NFDM was added and incubated at 37° C. for one hour. The plates were washed three times with PBS, 50 μl of alkaline phosphatase PPMP chromogenic substrate solution was added and incubated for 30 minutes, at room temperature. The Optical Density, at 550 run, was determined by reading the plates in a microplate autoreader (Bio-Teck Instruments, model EL3 11). The percent inhibition was determined by dividing the OD550 obtained in the presence of inhibitor by the mean OD550 obtained from 11 wells without inhibitor and then multiplying by 100.
Inhibition Studies
Seventy four peptides were synthesized and screened in the competitive inhibition ELISA. Briefly, the ‘crude’ peptides, that is they were not purified, were screened at a dilution of 1:2 against three different affinity purified anti-cardiolipin antibodies. Peptides that were positive, at a dilution of 1:2, were then rescreened at further doubling dilution's. Twenty-eight peptides, that inhibited at high dilution, were re-synthesized and purified. These purified peptides were then assayed in the competitive inhibition assay. Recombinant β2GPI was also assayed as a positive control.
The results, shown in FIG. 9, show that some of the peptides can inhibit the binding of anti-cardiolipin antibodies from binding to β2GPI. The majority of the peptides tested did not inhibit, thus conferring a degree of specificity to those that do inhibit. All but two of the positive peptides are clustered around the two sets of disulfide linked cysteines present in domain 1. The two peptides that are not so clustered are also the poorest at inhibiting. These disulfide linked cysteines may create structures that are recognized by β2GPI-dependent antiphospholipid antibodies.
Example 4
Mutagenesis and Micropanning Data to Determine Critical Amino Acid Residues in Domain 1 for Binding to β2 GPI Dependent Antiphospholipid Antibody
Error-Prone PCR
Error prone PCR was carried out as follows. Domain 1 of human β2GPI was amplified by PCR under conditions that enhance the error rate of Taq polymerase. The primers were such that amino acids 1-64 were amplified. A Sfc 1 restriction site was incorporated as part of amino acid 1. At the 3′ end a Sal 1 restriction site was incorporated after amino acid 64. The PCR reaction was done as described by Leung et al. (1989) Technique 1:11, using 0.25 mM MnCl2. The PCR product was digested with Sfc 1 and Sal 1 and cloned into fd-tet-DOG2 that had been digested with Apal 1 and Sal 1. This positions domain 1 at the N-terminus of pill immediately after the pill signal sequence. The ligation reaction was electroporated in E. coli K91. Phage were harvested and titered by standard methods. Resulting phage clones were assayed using a micropanning technique.
Micropanning
Immulon type 2 plates were coated with protein G. Protein G was prepared at 5 μg/mL in 0.1 M NaHCO3 and 100 μL per well was added to the wells of microtitration plates and incubated overnight at 4° C. After discarding excess protein G solution from plates, each well was blocked with 200 μL 2YT for 1 hour at RT with agitation on an oscillating platform. Tris-buffered saline, pH 7.4/0.5% Tween 20 (TBS/Tween), was used with an automatic plate washer to wash the wells 4 times with 200 μL. One hundred μL human β2GPI-dependent antiphospholipid 6626, 6501, 6701, rabbit β2GPI-dependent antiphospholipid, or control normal IgG, diluted to 2.5 μg/mL with 2YT, was added to washed wells. The plate was incubated for 1 hour at room temperature on a rotating platform.
Phage to be tested by micropanning were obtained from the agar plates generated by biopanning. Each clone to be tested was transferred using sterile toothpicks to a separate well of a round-bottom 96-well microtitration plate (Corning, Corning, N.Y.) containing 200 μL 2YT/Tet per well and cultured overnight at 30° C. Following overnight incubation, phage cultures were centrifuged using a microtitration plate holder at 1300×g for 10 minutes at room temperature. Supernatants constituted the source of “neat” phage. The neat phage were diluted 1: 100-1:1000 and 100 μL was added to the plate containing protein G-bound β2GPI-dependent antiphospholipid antibody-6501 and normal IgG prepared as described above. The incubation of dilute phage with aPL antibody or control IgG was carried out for 2 hours at room temperature on a flat rotator. After 9 washes with TBS/Tween in an automated plate washer, the IgG-bound phage was eluted with 20 μL of 0.2 N HCl-glycine/0.1% BSA, pH 2.2. The elution incubation continued for 10 minutes at RT, during which time a new Corning microtitration plate was prepared containing 20 μL of freshly starved E. coli per well and kept chilled. One hundred forty μL of 29 mM Tris was added to the plate containing the phage eluates in order to neutralize the pH, following which 20 μL of phage suspension was transferred from each well to the corresponding well in the plate containing starved E. coli. After a 10 minute incubation at 37° C., 200 μL 2YT was added and incubation carried out an additional 30 minutes at 37° C. Using multichannel pipettors, 8 μL from each well was spotted on a large 2YT/Tet agar plate while retaining the original 8×12 well pattern and orientation from the last microtitration plate. After allowing the spots to dry for 30 minutes, the plate was incubated overnight at 30° C. The following day, colonies were semiquantitatively scored from 0 to 4+, with 0 symbolizing <10 colonies; 1+=10-30; 2+=30 colonies to 70% confluent; 3+=70%-90% confluent; 4+=confluent.
The results are shown in Tables 7A and 7B. For Table 7A, the rabbit anti-human β2GPI was performed on two separate occasions. Mutations are listed with the original amino acid, the position number, and the identity of the amino acid at that position in the mutant. For example, S31F indicates that the Ser at position 31 was mutated to a Phe. Non-mutated domain 1 have a score of 3+, while domain 5 phage gave a score of −. Silent mutations are not shown. The clones begin at the N terminus and go toward the C terminus.
Table 7B represents an expansion of the mutational analysis, showing additional mutants tested against additional antibodies. The final four phage clones have mutations denoted by an asterisk, indicating that the phage have multiple mutations (3A4:D8A, S13T; 3F123: L10I, P17Q, Y22C; 3G1:R2W, S38T; 4D1:N56T, R63G).
The results indicate, inter alia (see below), that (a) the assay is consistent; (b) not all antibodies react the same; (c) different mutations at the same position can have very different effects (see Met 42, for example).
The overall results are depicted in the model of the tertiary structure of domain 1 shown in FIG. 3. It appears that amino acids 55-58 (ile, asn, leu), amino acids 40-45 (including amino acids 43-45, namely, arg, lys, phe) and amino acid 19 (lys) are important for binding to aCL antibody.







TABLE 7A







Micropans of mutant domain 1 phage










μpan score















Clone
Mutation
6626
6501
6701
Rabbit







2D9
T3P
2
3
3
2



A4
D8A
2
3
2
3, 3



A10
D8G
2
2
2
2, 2



H9
F12L
2
2
2
3



D1
T14A
2
2
3
3, 3



B6
K19E
ND
1
1
2, 3



C4
K19L
—
ND
ND
1



E3
T20L
2
ND
ND
4



2A1
T20S
3
3
3
3



H1
K33E
3
ND
ND
4



2B2
V37E
3
3
3
3



B11
M42K
3
3
3
3, 4



2D4
M42T
1
2
3
3



A6
M42V
ND
2
2
3, 3



C1
R43G
1
ND
ND
3



A1
R43T
3
2
—
2, 3



2D12
F45L
2
3
2
3



C3
F45S
—
ND
ND
4



A7
L52Q
3
3
3
3, 3



2C3
P54S
1
1
1
3



D11
N56D
—
ND
—
2, 3



B1
N56T
4
3
—
2, 3



B2
L58N
1
ND
ND
3

















TABLE 7







Micropans of Mutant Domain 1 Phage



















Clone
Mutation
Rabbit
Rabbit
Rabbit
Rabbit
Rabbit
6226
6501
6701
6644
7008
6632





2D9
T3P
4
4
4
4

4
4
4
4
4
3


4A6
D8G




4
2
2
2
3
2
2


A4
D8A
4
4
4
4

4
4
4
4
4
4


4G8
P11L




4
2
2
2
3
3
2


H9
F12L
4
3
4
4

3
4
3
3
4
3


D1
T14A
3
4
4
4

3
4
4
3
4
3


B6
K19E
3
3
4
4

1
1
1
2
0
0


C4
K19I
3
3
3
3

1
1
0
1
1
1


SE3
T20I
4
4
4
4

3
3
3
3
4
3


2A1
T20S
4
4
4
4

4
4
4
4
4
4


4G1
S31P




4
2
2
2
2
2
2


SH1
K33E
4
4
4
4

4
4
4
4
4
4


2B2
V37E
4
4
4
4

4
4
4
4
4
4


3B4
S38T




4
2
3
2
3
2
2


3E11
G40E




4
2
1
2
3
3
2


B11
M42K
4
4
4
4

4
4
4
4
4
4


2D4
M42T
4
4
4
4

3
4
4
4
4
4


A6
M42V
2
2
3
3

1
2
2
2
3
2


C1
R43G
4
4
4
4

3
1
0
4
4
2


A1
R43T
4
4
4
4

4
4
0
4
3
3


3F6
K44E




4
0
0
0
1
2
0


2D12
F45L
4
4
4
4

4
4
2
4
4
4


SC3
F45S
4
4
4
4

3
1
0
4
4
4


3F8
T50A





2
2
2
3
3
2


4B12
T50P




4
1
1
1
1
1
1


A7
L52Q
4
4
4
4
4
4
4
4
4
4
4


3C3
L52P




4
1
1
1
1
1
0


2C3
P54S
2
4
4
4

2
2
2
3
3
3


SC10
N56D
4
4
4
4

3
3
3
3
4
3


B1
N56T
4
4
4
4

4
4
0
4
4
4


3C4
N56-




4
1
2
1
2
2
2


B2
L58N
4
4
4
4

2
2
3
4
3
3


3A4
*




4
3
3
3
4
3
3


3F12
*




4
1
1
1
1
1
1


3G1
*




4
1
1
1
1
1
1


4D1
*




4
4
2
4
4
2
3


Dom1
WT
4
4
4
4
4
4
4
4
4
4
4


Dom5
WT
4
4
4
4
0
0
0
0
0
0
0









Example 5
Domain 1 β2GPI Polypeptide(s) Conjugated to Platforms
Synthesis of the Tetravalent Platform BA/PIZ/IDA/TEG (BA/PITG)
Compound 1: To a solution of 1.02 g (4.37 mmol) of N-(t-butoxycarbonyl)-iminodiacetic acid (compound 5 in U.S. Pat. No. 5,552,391, Chemically-Defined Non-Polymeric Valency Platform Molecules and Conjugates Thereof) and 1.01 g (8.75 mmol) of N-hydroxysuccinimide in 50 mL of dry THF, cooled to 0°, was added 2.26 g (10.94 mmol) of dicyclohexylcarbodiimide. The mixture was stirred for 16 h allowing to slowly warm to room temperature, and a solution of 2.22 g (10.1 mmol) of mono-CBZ-piperazine in 25 mL of THF was added to the mixture followed by 1.22 mL (887 mg, 8.75 mmol) of Et3N. The mixture was stirred for 7 h at room temperature, and filtered. The filtrate was concentrated and the residue was dissolved in 125 mL of EtOAc and shaken with 2×125 mL portions of 1 N HCl, 125 mL of sat NaHCO3 solution, dried (MgSO4), filtered, and concentrated to give 2.39 g of a sticky solid. Purification by silica gel chromatography (95/5 CH2Cl2/MeOH) gave 1.85 g (66%) of 1.
Compound 2: To a solution of 1.74 g (2.74 mmol) of compound 1 in 10 mL of CH2Cl2 was added 10 mL of trifluoroacetic acid, and the mixture was stirred for 3 h at room temperature. The mixture was concentrated, and the residue was dissolved in 5 mL of CH2Cl2. The mixture was cooled to 0° and 100 mL of sat NaHCO3 was added. The mixture was then extracted with four 100 mL portions of CH2Cl2. The CH2Cl2 layers were combined, dried (MgSO4), filtered, and concentrated to give 1.46 g (99%) of 2 as a sticky hygroscopic solid which was used directly in the next step.
Compound 3: To a solution of 0.7 g (1.3 mmol) of compound 2 and 226 uL (168 mg, 1.30 mmol) of diisopropylethylamine at 0° was added a solution of 127 uL of triethyleneglycol bis-chloroformate in 4 mL of CH2Cl2, and the mixture was stirred for 3 h at room temperature. The mixture was partitioned between 80 mL of CH2Cl2 and 80 mL of 1 N HCl. The CH2Cl2 layer was washed with two 80 mL portions of water, dried (MgSO4), filtered, and concentrated to give 736 mg (93%) of compound 3 as a crystalline solid.
Compound 5: Compound 3 (61 mg, 0.48 mmol) was dissolved in 3 mL of 30% HBr/HOAc and the resulting mixture was stirred at room temperature for 1 h at which time 5 mL of Et2O was added. The mixture was placed in the freezer for 1 h and centrifuged. The resulting pellet was washed with Et2O and dried to give the tetrahydrobromide salt 4 which was dissolved in 1 mL of H2O. To the mixture is added 49 mg (0.58 mmol) of NaHCO3 and 3 mL of dioxane. More NaHCO3 is added, if needed, to make the mixture basic. The mixture is cooled to 0°, and 748 mg (2.89 mmol) of bromoacetic anhydride is added. The mixture is stirred for 2 h and partitioned between 20 mL of 1 N H2SO4 and 20 mL of 80/20 CH2Cl2/MeOH. The organic layer is dried (Na2SO4), filtered and concentrated to give crude 5 which is purified by silica gel chromatography (CH2Cl2/MeOH) to give 5. 




Synthesis of AOA/PITG Tetrameric Platform and β2GPI Domain 1 Polypeptide Conjugate Compound 44
Transamination of Domain 1 (TA/D I): Water and sodium acetate buffer were sparged with helium before use. Domain 1 (10.55 mg, 1.49 μmol) was dissolved in 0.5 mL of H20 in a polypropylene tube, and 4.0 mL of 2 M pH 5.5 NaOAc buffer was added. A solution of 3.73 mg (14.9 μmol) of CuSO4 in 0.5 mL of H2O was added to the mixture, followed by a solution of 2.75 mg (29.9 μmol) of glyoxylic acid in 0.5 mL of 2 M pH 5.5 NaOAc buffer. The mixture was kept under nitrogen atmosphere and agitated gently for 18 h at which time the reaction appeared complete by analytical HPLC using a 4.6 mm×250 mm, 300 Å, 5 μm, diphenyl column (Vydac) with detection at 280 nm (1 mL/min; gradient 25%-45% B, 0-20 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN). Approximate retention times are as follows: D, 13.2 min; TA/D1, 13.7 min; oxidized TA/D1, 13.4 min). The mixture was diluted to a volume of 20 mL with H2O, filtered, and purified by HPLC (22.4 mm×250 mm, 300 Å, 10 μm, diphenyl column (Vydac, Hesperia, Calif.) (12 mL/min; gradient 25%40% B, 0-40 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN). Fractions containing pure TA/D 1, as evidenced by analytical HPLC, were pooled and lyophilized to provide 5.0 mg (48%) of TA/D1. 




Synthesis of Aminooxyacetyl (AOA)/PITG Platform

4-Nitrophenyl-N-(tert-butyloxycarbonyl)aminooxyacetate, 2′: To a stirred solution of 1.5 g (7.85 mmol) of N-(tert-butyloxycarbonyl)aminooxyacetic acid (Aldrich Chemical Co., St. Louis, Mo.), compound 1′, in 35 mL of anhydrous THF at 0° C. was added 1.09 g (7.85 mmol) of 4-nitrophenol followed by 1.62 g (7.85 mmol) of DCC. The mixture was stirred under a nitrogen atmosphere for 0.5 h at 0° C. and at room temperature for 18 h. The mixture was filtered to remove dicyclohexylurea, and the filtrate was concentrated and purified by silica gel chromatography (95/5 CHCl3/isopropyl alcohol) to give 2.30 g (94%) of compound 2′ as a white solid: 1H NMR (CDCl3) δ 1.51 (s, 9H), 4.73 (s, 2H), 7.36 (d, 2H), 7.73 (s, 1H), 8.32 (d, 2H).
Synthesis of BOC-protected AOA/PITG Platform, 4′: Compound 3 (300 mg, 0.235 mmol,) was treated with 1.5 mL of a 30% solution of HBr in acetic acid for 30 min. The HBr salt of the resulting tetra-amine was precipitated by addition of diethyl ether. The mixture was centrifuged, and the supernatant was removed and discarded. The remaining solid was washed with ether, dried under vacuum, and dissolved in 9 mL of DMF. To the resulting mixture was added 294 μL (1.69 mmol) of diisopropylethylamine followed by a solution of 410 mg (1.31 mmol) of compound 2 in 3 mL of DMF. The mixture was stirred under nitrogen atmosphere for 4 h and partitioned between 15/1 CHCl3/MeOH and brine. The aqueous layer was washed twice with 15/1 CHCl3/MeOH, and the combined organic layers were dried (Na2SO4) and concentrated to give 680 mg of an oil. Purification by silica gel chromatography (step gradient 95/5 to 75/25 CHCl3/MeOH) gave 215 mg (65%) of compound 4′ as a white solid: 1H NMR (CDCl3) δ 1.49 (s, 36H), 3.40-3.73 (m, 40H), 4.24(m, 12H), 4.59 (overlapping singlets, 8H), 8.21 (s, 2H), 8.32 (s, 2H).
AOA/PITG Platform, Compound 5′: HCl gas was bubbled through a stirred solution of 67 mg (0.047 mmol) of compound 4′ in 10/1/1 EtOAc/CHCl3/MeOH for 15 min, and the mixture was stirred for an additional 15 min. The mixture was concentrated under vacuum and kept under vacuum for 16 h to provide 43 mg (78%) of compound 5′ as a white solid: 1H NMR (DMSO) δ 3.33-3.67 (m, 40H), 4.08 (m, 4H), 4.18 (s, 8H), 4.90 (s, 8H); mass spectrum (ES) m/z calculated for C40H69N14O18: 1033. Found: 1033. 




Synthesis of Tetravalent D1 Conjugate Compound 44: TA/D1 (0.90 mg, 1.28×10−7 mol) was dissolved in 250 μL of 0.1 M sodium acetate pH 4.60 buffer in a polypropylene tube. To the mixture was added 16.6 μL (18.9 μg, 1.60×10−8 mol) of a 0.97 μmol/mL solution of AOA/PITG platform, compound 5′, in 0.1 M sodium acetate pH 4.60 buffer. The mixture was agitated gently under nitrogen for 6 days at which time the reaction appeared to be complete by analytical HPLC using a 4.6 mm×250 mm, 300 Å, 5 μm, diphenyl column (Vydac) with detection at 280 nm (1 mL/min; gradient 25%-45% B, 0-20 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN). Approximate retention times are as follows: TA/D1, 13.7 min; compound 44, 17.2 min). The mixture was diluted with 95/5 water/acetonitrile to a volume of 1 mL and purified by HPLC (10 mm×250 mm, 300 Å, 5 μm, diphenyl column (Vydac) (3 mL/min; gradient 25%-45% B, 0-40 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN). Fractions containing pure conjugate compound 44, as evidenced by analytical HPLC, were pooled and lyophilized to provide 0.4 mg (25%) of compound 44: mass spectrum (ES, average m/z) calculated for C1320H2032N338O370S20: 29,198. Found: 29,218. 




Synthesis of Tetrameric AOTEG/DEA/DEG Platform and β2GPI Domain 1 Polypeptide Conjugate

2-[2-(2-iodoethoxy)ethoxy]ethanol, 7: 2-[2-(2-Chloroethoxy)ethoxy]ethanol (12.66 g, 75.1 mmol) and sodium iodide (33.77 g, 225.3 mmol) were dissolved in 250 mL of acetone. A reflux condenser was attached to the flask, and the mixture was heated at reflux for 18 h. When cool, the mixture was concentrated, and the residue was shaken with 400 mL of CH2Cl2 and a mixture of 300 mL of water and 100 mL of saturated aqueous sodium bisulfite solution. The aqueous layer was washed twice with 400 mL portions of CH2Cl2, and the combined CH2Cl2 layers were dried (MgSO4), filtered, and concentrated to provide 18.3 g (94%) of 7 as a light yellow oil which was used in the next step without further purification: 1H NMR (CDCl3) δ 2.43 (brd s, 1H), 3.28 (t, 2H); 3.61 (m, 2H), 3.68 (s, 4H), 3.78 (m, 4H); mass spectrum (ES) m/z calculated for C6H13O3INa (M+Na)+: 283.0. Found: 283.0.
2-[2-(2-N-(tert-butyloxycarbonyl)aminooxyethoxy)ethoxy]ethanol, 8: To 5.85 g (1.50 mmol) of 2-[2-(2-iodoethoxy)ethoxy]ethanol, compound 7, was added 2.00 g (1.00 mmol) of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) and 3.36 mL (3.42 g, 1.50 mmol) of DBU. The mixture was stirred to give a viscous liquid that became hot to the touch and placed in a 55° C. oil bath for 18 h resulting in the formation of a white precipitate which solidified the mixture. The mixture was dissolved in 20 mL of CH2Cl2 and added to 500 mL of stirred EtOAc resulting in the formation of a precipitate which was removed by filtration, and the filtrate was concentrated to give a brown-yellow oil. Purification by flash chromatography (50% acetone/hexane) to give 2.61 g (67%) of 8 as an oil: 1H NMR (CDCl3) δ 1.50 (s, 9H), 3.65 (t, 2H), 3.70 (brd s, 4H), 3.76 (m, 4H), 4.06 (t, 2H), 7.83 (brd s, 1H); 13C NMR (CDCl3) δ 28.0, 61.3, 68.9, 70.1, 70.3, 72.5, 72.6, 75.1, 81.2, 157.1.
2-[2-(2-N-(tert-butyloxycarbonyl)aminooxyethoxy)ethoxy]ethylbromide, compound 9: Bromine (approximately 0.283 mmol) was added dropwise to a solution of 50 mg (0.188 mmol) of compound 8, 74 mg (0.283 mmol) of triphenylphosphine, and 31 μL (30 mg, 0.377 mmol) of pyridine in 2 mL of CH2Cl2 until an orange color persisted. The mixture was stirred at room temperature for 0.5 h, and 1 mL of a saturated solution of sodium bisulfite was added to quench excess bromine. The mixture was then partitioned between 10 mL of H2O and 2×15 mL of EtOAc. The combined organic layers were washed with brine, dried (Na2SO4), filtered, and concentrated. Purification of the residue by silica gel chromatography (35/65 acetone/hexane) provided 54 mg of compound 9 as an oil: 1H NMR (CDCl3) 67  1.49 (s, 9H), 3.48 (t, 2H), 3.68 (s, 4H), 3.73 (m, 2H), 3.84 (t, 2H), 4.03 (t, 2H), 7.50 (s, 1H); —C NMR (CDCl3) δ 28.3, 30.4, 69.4, 70.6 (two signals), 71.3, 75.5, 81.7, 156.9.
2-[2-(2-N-(tert-butyloxycarbonyl)aminooxyethoxy)ethoxy]ethylazide, 10:
Synthesis from compound 9: A solution of 100 mg (0.305 mmol) of compound 9 in 0.25 mL of anhydrous DMF was added to a solution of 159 mg (2.44 mmol) of sodium azide in 0.5 mL of anhydrous DMF. An additional 0.25 mL of DMF was used to rinse residual 9 into the reaction mixture, and the mixture was heated at 115° C. for 3 h. When cool, the mixture was partitioned between 3 mL of H2O and 4×3 mL of CH2Cl2. The combined organic layers were washed with 10 mL of H2O, dried (Na2SO4), filtered, and concentrated to provide a yellow oil. Purification by silica gel chromatography (35/65 acetone/hexane) gave 67 mg (76%) of 10 as an oil: 1H NMR (CDCl3) δ 1.47 (s, 9H), 3.41 (t, 2H), 3.69 (brd s, 4H), 3.73 (m, 4H), 4.03 (t, 2H), 7.50 (s, 1H); 13C NMR (CDCl3) δ 28.1, 50.5, 69.1, 70.1, 70.4 (two signals), 75.2, 81.3, 156.7.
Synthesis of 10 from compound 13: To a solution of 258 mg (0.69 mmol) of compound 13 in 5 mL of DMF under nitrogen atmosphere was added 358 mg (5.50 mmol) of sodium azide. The mixture was stirred for 18 hours at room temperature, 100 mL of water was added, and the mixture was extracted with 3×50 mL of EtOAc. The EtOAc layers were combined and washed with 50 mL of water, dried (Na2SO4), filtered, and concentrated to provide 294 mg of a colorless oil. Purification by silica gel chromatography (30/70 acetone/hexanes) provided compound 10 as a colorless oil.
Compound 11: (MR-508-128) Compound 10 (1.36 g, 4.70 mmol) and triphenylphosphine (1.48 g, 5.64 mmol) were dissolved in 24 mL of THF and 8 mL of H20, and the resulting solution was stirred at room temperature for 2 hours. Approximately 160 μL (eight drops) of 1 N NaOH was added, and the mixture was stirred for 18 hours. The mixture was concentrated under vacuum, and the concentrate was purified by silica gel chromatography (80/8/2 CH3CN/H2O/con NH40H) to give 1.16 g (94%) of 11 as a yellow oil: 1H NMR (CDCl3) δ 1.50 (s, 9H), 1.90 (brd, 2H), 2.88 (t, 2H), 3.56 (t, 2H), 3.65 (m, 4H), 3.71 (m, 2H), 4.01 (m, 2H).
1,2-Bis(2-iodoethoxy)ethane, compound 12: A solution of 10.0 g (5.3 mmol) of 1,2-bis(2-chloroethoxy)ethane (Aldrich Chemical Co.) and 16.0 g (107 mmol) of sodium iodide in 110 mL of acetone was heated at relux for 18 h. The mixture was concentrated and the residue was triturated with CHCl3 to dissolve product while salts remained undissolved. The mixture was filtered, and the filtrate was concentrated to give an orange oil. Purification by silica gel chromatography (step gradient, 10/90 EtOAc/hexanes to 15/85 EtOAc/hexanes) to provide 17.8 g (90%) of an orange oil: 1H NMR (CDCl3) δ 3.28 (t, 4H), 3.67 (s, 4H), 3.78 (t, 4H); 13C NMR (CDCl3) δ 3.6, 70.5, 72.2.
Compound 13: DBU (284 μL, 290 mg, 1.90 mol) was added to a mixture of 266 mg (2.0 mmol) of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) and 2.96 g (8.0 mmol) of compound 12, and the mixture was capped and shaken until homogeneous. After 15 minutes the mixture solidified, and it was allowed to stand for 45 minutes. To the mixture was added 5 mL of CH2Cl2, and the mixture was shaken again to dissolve solids. The resulting solution was added to 200 mL of EtOAc. An additional 50 mL of EtOAc was added, and the mixture was filtered to remove solids. The filtrate was concentrated to give an oil which was partitioned between 100 mL of EtOAc and 3×50 mL of 1 N HCl solution. The EtOAc layer was washed with 2×50 mL of 1 N NaOH followed by 2×50 mL of 5% sodium bisulfite solution and concentrated to provide 2.6 g of yellow oil. Purification by silica gel chromatography (step gradient, 20/80 to 45/55 EtOAc/hexanes) gave 515 mg (69%) of compound 13 as a yellow oil: 1H NMR(CDCl3) δ 1.50 (s, 9H), 3.28 (t, 2H), 3.68 (s, 4H), 3.72 (m, 4H), 4.02 (t, 2H), 7.72 (s, 1H); 13C NMR (CDCl3) δ 2.9, 28.3, 68.9, 69.4, 70.2, 70.6, 72.0, 75.4, 81.6, 156.9.
Diethyleneglycol bis-4-nitrophenylcarbonate, Compound 60: Pyridine (30.5 mL, 377 mmol) was slowly added to a 0° C. solution of 5.0 g (47.11 mmol) of diethylene glycol and 23.74 g (118 mmol) of 4-nitrophenylchloroformate in 500 mL of THF. The cooling bath was removed, and the mixture was stirred for 18 hours at room temperature. The mixture was cooled back to 0° C., acidified with 6 N HCl, and partitioned between 400 mL of 1 N HCl and 2×400 mL of CH2C12. The combined organic layers were dried (MgSO4), filtered, and concentrated to give 24.3 g of a white solid. Crystallization from hexanes/EtOAc gave 16.0 g (78%) of compound 37 as a white powder: mp 110° C.; 1H NMR (CDCl3) δ 3.89 (t, 4H), 4.50 (t, 4H), 7.40 (d, 4H), 8.26 (d, 4H).
Compound 61: A solution of 2.5 g (5.73 mmol) of compound 37 in 17 mL of pyridine was added to a 0° C. solution of 1.8 g (17.2 mmol) of diethanolamine in 3 mL of pyridine. The cooling bath was removed, and the mixture was stirred for 5 hours at room temperature to yield compound 38, which was not isolated but was used as is in the next step.
Compound 14: The mixture from the previous step was cooled back to 0° C., 40 mL of CH2Cl2 was added followed by a solution of 11.55 g (57.3 mmol) of 4-nitrophenylchloroformate in 60 mL of CH2Cl2, and the mixture was stirred for 20 hours at room temperature. The mixture was cooled back to 0° C., acidified with 1 N HCl, and partitioned between 300 mL of 1 N HCl and 2×200 mL of CH2Cl2. The combined organic layers were dried (MgSO4), filtered, and concentrated to give 13.6 g of yellow solid. Purification by silica gel chromatography (CH2Cl2/MeOH and EtOAc/hexanes) provided 4.91 g (83%) of compound 39 as a sticky amorphous solid: 1H NMR (CDCl3) δ 3.72 (m, 12H), 4.31 (t, 4H), 4.48 (m, 8H), 7.40 (m, 8H), 8.29 (m, 8H). 




BOC-Protected AOTEG/DEA/DEG Platform, Compound 15: Triethylamine (157 μL, 114 mg, 1.13 mmol) added to a stirred solution of 193 mg (0.188 mmol) of compound 14 (prepared as described above and in U.S. Serial No. 60/111,641, filed Dec. 9, 1998) followed by 298 mg (1.13 mmol) of compound 11. The mixture was allowed to come to room temperature and was stirred overnight. The mixture was cooled to 0° C., acidified with 1 N HCl, and partitioned between 20 mL of 1 N HCl and 4×20 mL of CH2Cl2. The combined organic layers were washed with saturated NaHCO3 solution, dried (MgSO4), filtered, and concentrated to give 279 mg of yellow oil. Purification by silica gel chromatography (97/3 CH2Cl2/MeOH) provided 138 mg (48%) of 15 as an oil: 1H NMR (CDCl3) δ 1.49 (s, 36H), 3.35 (m, 8H), 3.46-3.78 (m, 44H), 4.04 (t, 8H), 4.21 (m, 12H), 5.80 (m, 4H), 7.91 (s, 4H); mass spectrum (ES) m/z calculated for C62H117N10O33 (M+H)+: 1528.8. Found: 1528.5.
Compound 16: Compound 15 (60 mg, 39.2 μmol) was dissolved in 10 mL of {fraction (1/9)} trifluoroacetic acid/CH2Cl2, and the mixture was kept at room temperature for 3 h. Gentle stream of nitrogen was used to evaporate the solvent, and the residue was dissolved in a minimal amount of chromatography solvent (5/7.5/87.5 con NH4OH/H2O/CH3CN) which was used to load the mixture onto a silica gel column. Purification by silica gel chromatography (step gradient, 5/7.5/87.5 to May 10, 1985 con NH4OH/H2O/CH3CN) provided 36 mg (82%) of 16 as a colorless oil: 1H NMR (CDCl3) δ 3.37 (m, 8H), 3.58 (m, 16H), 3.67 (s, 16H), 3.71 (m, 12H), 3.86 (m, 8H), 4.17-4.29 (m, 12H), 4.93 (brd, 8H), 5.91 (m, 4H); 13C NMR (CDCl3) δ 40.9, 47.7, 48.2, 62.9, 64.7, 69.4, 69.6, 70.2, 70.3, 70.5, 74.8, 156.1, 156.6; mass spectrum (ES) m/z calculated for C42H85N10O25 (M+H): 1129. Found: 1129.
For the purpose of checking purity by analytical HPLC, the tetra-acetone oxime was prepared as follows. Compound 16 (0.38 mg, 0.34 μmol) was dissolved in 240 μL of 0.1 M NaOAc buffer in an HPLC sample vial. To the solution was added 10 μL of a solution of 49 μL of acetone in 2.0 mL of 0.1 M NaOAc buffer. The mixture was allowed to stand for 1 h and an aliquot was analyzed by HPLC (4.6 mm C18 column, 1 mL/min, 210 nm detection, gradient, 10-60% B over 20 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN, tR=19 min); mass spectrum of collected eluent (ES) m/z calculated for C54H101N10O25 (M+H): 1289. Found: 1289. 




Synthesis of Tetravalent D1 Conjugate Compound 45: TA/D1 (5.20 mg, 7.37×10−7 mol) was dissolved in 2.0 mL of He sparged 0.1 M sodium acetate pH 4.60 buffer in a polypropylene tube. To the mixture was added 15.07 μL (139 μg, 1.23×10−7 mol) of a 8.147 μmol/mL solution of AOTEG/DEA/DEG platform, compound 16, in 0.1 M sodium acetate pH 4.60 buffer. The mixture was agitated gently under nitrogen for 23 hours at which time the reaction appeared to be complete by analytical HPLC using a 4.6 mm×250 mm, 300 Å, 5 μm, diphenyl column (Vydac) with detection at 280 nm (1 mL/min; gradient 25%-45% B, 0-20 min, A=0.1% TFA/H2O, B=0.1% TFA/CH3CN). Approximate retention times are as follows: TA/D1, 13.7 min; conjugate compound 45, 17.2 min). The mixture was diluted with water to a volume of 5 mL and purified by HPLC (10 mm×250 mm, 300 Å, 5 μm, TFA/H2O, B 0.1% TFA/CH3CN). Fractions containing pure conjugate compound 45, as evidenced by analytical HPLC, were pooled and lyophilized to provide 1.73 mg (48%) of conjugate compound 45: mass spectrum (ES, average m/z) calculated for C1322H2048N334O377S20: 29,294. Found: 29,294. 




Preparation of Tetravalent D1 Conjugate via Alkylation of Fifth-Cys with an Alkylhalide Platform, Compound 65: Domain 1 has four cysteines which are in oxidized form, and properly folded domain 1 has two disulfide bonds. A fifth cysteine can be included at any position at the N-terminus or C-terminus outside of the native cysteines. In this example a fifth cysteine is included which is native to the second domain of β2GPI. A fifth cysteine can be used, by virtue of its free sulfhydryl group, to react with a platform designed to react with sulfhydryl groups. One such platform is a haloacetyl platform such as compound 23.
Fifth-Cys D1 (four equivalents) is dissolved in helium sparged 100 mM pH 8.0 sodium borate buffer. The solution is kept under nitrogen atmosphere, and a solution of bromoacetylated platform, compound 23 (one equivalent), is added. The mixture is stirred until the reaction is complete, and purification of the mixture by preparative HPLC provides tetravalent conjugate, compound 65. 




Synthesis of AOTEG/PIZ/DEA/DEG Platform, Compound 17: Pyridine (610 μL, 596 mg, 7.54 mmol) was added slowly to a stirred solution of 500 mg (1.88 mmol) of compound 8 and 760 mg (3.77 mmol) of p-nitrophenylchloroformate in 14 mL of CH2Cl2, and the mixture was stirred at room temperature for 18 hours. The mixture was cooled to 0° C. and acidified with IN aqueous HCl. The resulting mixture was partitioned between 100 mL of 1 N aqueous HCl and 3×100 mL of CH2Cl2. The combined organic layers were dried (MgSO4), filtered, and concentrated to give 1.05 g of a sticky solid. Purification by silica gel chromatography (6/4 hexanes/EtOAc) gave 505 mg (62%) of compound 17 as a slightly yellow oil: 1H NMR (CDCl3) δ 1.47 (s, 9H), 3.67-3.78 (m, 6H), 3.80 (m, 2H), 4.02 (m, 2H), 4.48 (m, 2H), 7.40 (d, 2H), 7.50 (s, 1H), 8.29 (d, 2H); mass spectrum (ES) m/z calculated for C18H26N2O10Na (M+Na): 453.1. Found: 453.0.
BOC-protected AOTEG/PIZ/DEA/DEG platform, compound 19: To a solution of compound 18 (prepared as described in U.S. Serial No. 60/111,641, filed Dec. 9, 1998) in a mixture of aqueous sodium bicarbonate and dioxane is added a solution of four equivalents of compound 17 in dioxane. Upon completion of the reaction, the mixture is partitioned between water and CH2Cl2. The CH2Cl2 layer is concentrated, dried, and purified by silica gel chromatography to provide compound 19.
AOTEG/PIZ/DEA/DEG platform, compound 20: The BOC-protecting groups are removed from compound 19 in a manner essentially similar to that described for the preparation of compound 16 to provide compound 20. 




Synthesis of AOTEG/SA/AHAB/TEG Platform, S-acetyl-2-[2-(2-N-tert-butyloxycarbonylaminooxyethyoxy)ethoxy]-ethylmercaptan, Compound 21a: To a solution of 500 mg (1.52 mmol) of compound 9a in 30 mL of acetone was added 191 mg (1.68 mmol) of potassium thioacetate (Aldrich Chemical Co.). The mixture was stirred at room temperature for 18 hours, and the resulting precipitate was removed by filtration. The filtrate was concentrated and partitioned between 300 mL of EtOAc and 2×80 mL of brine. The EtOAc layer was dried (NaSO4), filtered, and concentrated to give 460 mg (93%) of compound 21a as a light brown oil: 1H NMR (CDCl3) δ 1.48 (s, 9H), 2.35 (s, 3H), 3.12 (t, 2H), 3.61 (t, 2H), 3.64 (m, 4H), 3.73 (m, 2H), 4.02 (m, 2H), 5.52 (s, 1H); 13C NMR (CDCl3) δ 28.3, 28.8, 30.6, 69.3, 69.8, 70.2, 70.5, 75.3, 81.5, 156.8, 195.3.
2-[2-(2-N-tert-butyloxycarbonylaminooxyethyoxy)ethoxy]ethylmercaptan, Compound 22a: Compound 21 a is treated with a nitrogen sparged solution of 4/1 6N NH4OH/CH3CN in a nitrogen atmosphere for 1 hour at room temperature. The mixture is concentrated under vacuum to provide compound 22a which can be used without further purification.
BOC-protected AOTEG/SA/AHAB/TEG platform, 24a: Compound 23 (prepared as described; Jones et al. J. Med. Chem. 1995, 38, 2138-2144.) is added to a solution of four equivalents of compound 22a in nitrogen sparged 10/90H2O/CH3CN. To the resulting solution is added four equivalents of diisopropylethylamine. Upon completion of the reaction, the mixture is partitioned between water and CH2Cl2. The CH2Cl2 layer is concentrated, dried, and purified by silica gel chromatography to provide compound 24a.
AOTEG/SA/AHAB/TEG platform, 25a: The BOC-protecting groups are removed from compound 24a in a manner essentially similar to that described for the preparation of compound 16 to provide compound 25a. 







Synthesis of AOHEX/SA/AHAB/TEG Platform, 1-Iodo-6- (N-tert-butyloxycarbonyl)aminooxyhexane, compound 9b: To a heterogeneous mixture of 140 mg (1.05 mmol) of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) and 658 μL (1.35 mg, 4.0 mmol) of compound 12 was added 149 μL (152 mg, 1.0 mmol) of DBU. The mixture was stirred at room temperature for 30 seconds at which time the reaction mixture solidified. The solid mass was allowed to stand overnight and was dissolved in 50 mL of CH2Cl2. The solution was washed with 2×25 mL of 1 N NaOH and 3×25 mL of 1 N HCl. The combined basic aqueous layers were extracted with 25 mL of CH2Cl2, and the combined acidic aqueous layers were extracted with 25 mL of CH2Cl2. The combined CH2Cl2 layers were dried (Na2SO4), filtered, and concentrated to give a yhellow oil. Purification by silica gel chromatography (step gradient; 1/99/0.1 to 15/85/0.1 EtOAc/hexanes/MeOH) provided 216 mg (68%) of 9b as a yellow oil: 1H NMR (CDCl3) δ 1.40 (m, 4H), 1.48 (s, 9H), 1.62 (m, 2H), 1.83 (m, 2H), 3.20 (t, 2H), 3.84 (t, 2H), 7.10 (s, 1H).
S-acetyl-6-(N-tert-butyloxycarbonyl)aminooxyhexan-1-thiol, Compound 21b: Compound 9b (209 mg (0.61 mmol) was added to a solution of potassium thioacetate in 15 mL of acetone, and the mixture was stirred at room temperature for 18 hours. The acetone was removed under vacuum, and the residue was partitioned between 50 mL of CH2Cl2 and 3×25 mL of 1 N NaOH. The CH2Cl2 layer was dried (Na2SO4), filtered, and concentrated to give a brown oil. Purification by silica gel chromatography (15/85 EtOAc/hexanes) provided 166 mg (94%) of compound 21b as a colorless oil. 1H NMR (CDCl3) δ 1.39 (m, 4H), 1.48 (s, 9H), 1.59 (m, 4H), 2.32 (s, 3H). 2.86 (t, 2H), 3.82 (t, 2H), 7.10 (s, 1H).
6-(N-tert-butyloxycarbonyl)aminooxyhexan-1-thiol, Compound 22b: A purified sample of 22b was prepared as follows. Compound 21 b (50 mg, 172 μmol) and 22 μL (17.4 mg, 85.8 μmol) of tri-n-butylphosphine was placed under nitrogen, and 2 mL of a nitrogen sparged 1 M solution of NaOH in MeOH was added to the mixture. The mixture was stirred for 18 hours at room temperature, and 172 μL (180 mg, 3 mmol) of trifluoroacetic acid was added. The mixture was partitioned between 25 mL of EtOAc and 3×25 mL of 1 N HCl. The combined aqueous layers were extracted with 25 mL of EtOAc, dried (Na2SO4), filtered, and concentrated to give an oil. Purification by silica gel chromatography (15/85/0.1 EtOAc/hexanes/MeOH) provided 28 mg of 22b as a colorless oil: 1H NMR(CDCl3) δ 1.32 (t, 1H), 1.40 (m, 4H), 1.49 (s, 9H), 1.62 (m, 4H), 2.53 (d of t, 2H). 3.84 (t, 2H), 7.09 (s, 1H).
BOC-Protected AOHEX/SA/AHAB/TEG platform, 24b: Compound 21 b (13 mg, 45 μmol) and 6 μL (4.5 mg, 22.3 μmol) of tri-n-butylphosphine was placed under nitrogen, and 3 mL of a nitrogen sparged solution of 4/1 6 N NH4OH/CH3CN was added to the mixture. The mixture was stirred for 1 hour at room temperature and concentrated under vacuum. The residue was dissolved in 3 mL of a nitrogen sparged solution of 10/90 water/CH3CN. To the resulting solution, which was kept under nitrogen atmosphere, was added 10 mg (7.44 μmol) of compound 23 followed by 8 μL (5.77 mg, 44.6 μmol) of diisopropylethylamine. The mixture was stirred for 18 hours and concentrated under vacuum. The residue was purified by silica gel chromatography (multiple step gradient, 1/99 to 5195 to 7.5/92.5 to 10/90 to 15/85 MeOH/CH2Cl2) to provide 14 mg (93%) of 24b as a colorless oil: TLC (10/90 MeOH/CH2Cl2), Rf=0.3; mass spectrum (ES) m/z calculated for C92H173N14O26S4 (M+H): 2018. Found: 2018.
AOHEX/SA/AHAB/TEG platform, 25b: The BOC-protecting groups are removed from compound 24b in a manner essentially similar to that described for the preparation of compound 16. 







Synthesis of AOHOC/DT/TEG Platform, 6(tert-butyloxycarbonylaminooxy)hexan-1-ol, 27: To a solution of 179 μL (183 mg, 1.2 mmol) of DBU in 1 mL of CH2Cl2 was added 133 mg (1.0 mmol) of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) and 157 μL (217 mg, 1.2 mmol) of 6-bromohexan-1-ol (Aldrich Chemical Co.), and the mixture was stirred for 18 hours at room temperature. The mixture was concentrated to give a yellow oil. Purification by silica gel chromatography (35/5/65 EtOAc/MeOH/hexanes) gave 180 mg (77%) of compound 27 as a colorless oil: 1H NMR (CDCl3) δ 1.39 (m, 4H), 1.48 (s, 9H), 1.59 (m, 4H), 3.63 (t, 2H), 3.85 (t, 2H), 7.42 (s, 1H); 13C NMR (CDCl3) δ 25.6, 25.8, 28.1, 28.4, 62.8, 76.8, 81.7, 157.2.
Compound 28: To a solution of 100 mg (0.428 mmol) of compound 27 in 2 mL of CH2Cl2 at 0° C. was added 90 μL (88.1 mg, 1.11 mmol) of pyridine followed by 113 mg (0.557 mg) of p-nitrophenylchloroformate (Aldrich Chemical Co.). The mixture was stirred at room temperature for 4 hours, cooled to 0° C., acidified with 1 N HCl, and partitioned between 20 mL of 1 N HCl and 3×20 mL of CH2Cl2. The combined CH2Cl2 layers were washed with a saturated solution of NaHCO3, dried (MgSO4), filtered, and concentrated. Purification by silica gel chromatography to provided compound 28.
Compound 29: To a solution of diethylenetriamine in EtOAc is added two equivalents of diisopropylethylamine followed by two equivalents of compound 28. The mixture is stirred until the reaction is complete. The solvents are removed and the product, compound 29, is purified by silica gel chromatography.
BOC-protected AOHOC/DT/TEG Platform, 30: To a solution of triethylene glycol bis-chloroformate (Aldrich Chemical Co.) in pyridine is added two equivalents of compound 29. The mixture is stirred until the reaction is complete and partitioned between 1 N HC1 and CH2Cl2. The CH2Cl2 layer is dried and concentrated, and the product is purified by silica gel chromatography to give compound 30.
AOHOC/DT/TEG Platform, 331: The BOC-protecting groups are removed from compound 30 in a manner essentially similar to that described for the preparation of compound 16. 




Synthesis of AOTEG/IDA/TEG Platform, Compound 32: To a solution of 7: triethylene glycol bis-chloroformate (Aldrich Chemical Co.) in pyridine is added two equivalents of iminodiacetic acid (Aldrich Chemical Co.). The mixture is stirred until the reaction is complete and partitioned between 1 N HC1 and CH2Cl2. The CH2Cl2 layer is dried and concentrated, and the product is purified by silica gel chromatography to give compound 32.
Compound 33: A solution of compound 32 in THF is treated with 6 equivalents of NHS and 6 equivalents of DCC for 1 hour. To the mixture is added 4 equivalents of compound 11, and the mixture is stirred until the reaction is complete. Acetic acid is added to quench excess DCC, and the resulting solids are removed by filtration. The filtrate is concentrated and purified by silica gel chromatography to provid compound 33.
Compound 34: The BOC-protecting groups are removed from compound 33 in a manner essentially similar to that described for the preparation of compound 16. 




Synthesis of AOTEGO/LEV/PITG
Platform, p-Nitrophenyl-levulinate, 35: To a solution of 800 mg (6.89 mmol) of levulinic acid (Aldrich Chemical Co.) in 4.25 mL of pyridine was added 1.78 g (7.58 mmol) of 4-nitrophenyltrifluoroacetate (Aldrich Chemical Co.). The resulting solution was stirred for 15 minutes and partitioned between 28 mL of water and 2×28 mL of CH2Cl2. The combined CH2Cl2 layers were dried (MgSO4), filtered, and concentrated. Purification of the concentrate by silica gel chromatography (step gradient, 25/75 to 30/70 EtOAc/hexanes) provided 1.06 g (74%) of compound 35: 1H NMR (CDCl3) δ 2.28 (s, 3H), 2.87 (m, 4H), 7.29 (d, 2H), 8.28 (d, 2H).
1,2-Bis(2-(tert-butyloxycarbonyl)aminooxyethoxy)ethane, compound 36:
To 243 mg (0.66 mmol) of compound 12 was added 219 mg (1.64 mmol) of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) followed by 246 μL (250 mg, 1.64 mmol) of DBU. The mixture was stirred at room temperature until it solidified (approximately 1 hour). After standing for an additional hour, the mixture was dissolved in 2 mL of CH2Cl2, and the resulting solution was added to 100 mL of EtOAc to precipitate the hydrogen-iodide salt of DBU. An additional 50 mL of EtOAc was added, and the mixture was filtered. The filtrate was washed with 2×50 mL of 1 N HCl, 2×50 mL of 5% sodium bisulfite solution, and 25 mL of brine. The EtOAc layer was dried (Na2SO4), filtered, and concentrated to give an oil. Purification by silica gel chromatography (step gradient, 40/60 to 50/50 to 80/20 EtOAc/hexanes) to give 164 mg (65%) of compound 36 as a colorless oil: 1H NMR (CDCl3) δ 1.48 (s, 18H), 3.65 (s, 4H), 3.72 (t, 4H), 4.02 (t, 4H), 7.80 (s, 2H); 13C NMR (CDCl3) δ 28.2, 69.0, 70.3, 75.2, 81.3, 156.8.
1,2-Bis(2-aminooxyethoxy)ethane, compound 37: Compound 36 (559 mg, 1.47 mmol) was dissolved in 15 mL of of EtOAc, and HCl gas was bubbled through the solution for 30 minutes. The mixture was concentrated under vacuum to provide 72 mg (90%) of compound 37 as the HCl salt as a sticky residue: 1H NMR (D2O) δ 3.75 (s, 4H), 3.87 (m, 4H), 4.27 (m, 4H); mass spectrum (ES) m/z calculated for C6H17N2O4 (M+H): 181.1. Found: 181.1.
Compound 38: Compound 3 is treated with a 30% Solution of HBr in acetic acid to remove the CBZ protecting groups and provide a tetra-amine hydrogen bromide salt. The tetra-amine is dissolved in a solution of sodium bicarbonate in water and dioxane, and to the resulting solution is added four equivalents of compound 35. Upon completion of the reaction, the mixture is partitioned between water and CH2Cl2. The CH2Cl2 layer is concentrated, dried, and purified by silica gel chromatography to provide compound 38.
AOTEGO/LEV/PITG Platform, compound 39: To a solution of compound 38 in 0.1 M pH 4.6 sodium acetate buffer is added twenty equivalents of compound 37. Upon completion of the reaction, the mixture is partitioned between water and CH2Cl2. The CH2Cl2 layer is concentrated, dried, and purified by silica gel chromatography to provide compound 39. 




Synthesis of AO/DEGA/DEG Platform, Compound 41: Bromine (approximately six equivalents) is added dropwise to a solution of compound 40, six equivalents of triphenylphosphine, and 8 equivalents of pyridine in CH2Cl2 Until an orange color persists. The mixture is stirred at room temperature for 0.5 h or until reaction is complete, and a saturated solution of sodium bisulfite is added to distroy excess bromine. The mixture is then partitioned between H2O and EtOAc. The combined organic layers are washed with brine, dried (Na2SO4), filtered, concentrated, and purified by silica gel chromatography to provide compound 41.
Compound 42: To compound 41, is added six equivalents of N-(tert-butyloxycarbonyl)hydroxylamine (Aldrich Chemical Co.) and six equivalents of DBU. The mixture is heated as necessary for a sufficient time for the reaction to come to completion. When cool, the mixture is dissolved in CH2Cl2 and the resuting solution is added to EtOAc resulting in the formation of a precipitate which is removed by filtration, and the filtrate is concentrated. Purification by flash chromatography provides 8.
Compound 43: The BOC-protecting groups are removed from compound 42 in a manner essentially similar to that described for the preparation of compound 16. 




Alternative Method of Preparing a Tetravalent Conjugate Using Compound 37 as a Bifunctional Linker: As an alternative to reacting a transaminated domain 1 β2GPI polypeptide directly with a tetravalent aminooxy platform, transaminated Domain 1 can be reacted with an excess of compound 37 in pH 4.6 100 mM sodium acetate buffer to provide compound 53 in which an aminoxy linker is attached to domain 1 β2GPI polypeptide via an oxime bond. Compound 53 is separated from excess linker, and four equivalents of compound 53 is reacted with platform 38 in pH 4.6 100 mM sodium acetate buffer to form a second set of oxime bonds providing a tetravalent conjugate, compound 54. 




Alternative Method of Preparing a Tetravalent Conjugate Using Compound 21a as a Precurser to a Bifunctional Linker: Treatment of compound 21a with ammonium hydroxide to remove the acetyl sulfur protecting group, then with trifluoroacetic acid to remove the BOC protective group provides linker 55. A glyoxyl-containing polypeptide, in this case TA/D1, is reacted with compound 55 to provide compound 56, domain 1 β2GPI polypeptide with a the sulfhydryl linker attached via an oxime bond. Four equivalents of compound 56 can react with platform 23 to provide a tetravalent domain 1 β2GPI polypeptide conjugate, compound 57. 




Example 6
Binding Properties of Domain 1 D2GPI Polypeptide Tetrameric Conjugate Compound 44
Binding of tetrameric conjugate compound 44 to two affinity purified human 4/X5 anti-β2-GPI antibodies was analyzed using surface plasmon resonance.
Materials and Methods for Kd Determinations of Tetrameric Conjugate Compound 44
Reagents. CM5 chips, NHS and EDC and HBS-EP buffer were from BIAcore. Human pooled normal IgG (Zymed) was immobilized in a separate flow cell on the chip and used as a negative control. Affinity purified 2-GPI domain 1 specific antibodies from 2 patients (6701 and 6626) were immobilized in separate flow cells.
Surface Plasmon Resonance. All experiments were done on a BIAcoreTM 2000 instrument at 25° C. with a flow rate of 10 μL/minute. Chip equilibration and binding studies were performed with degassed HBS-EP buffer, which consists of 0.01 M HEPES pH 7.4, 0.15 M NaCl, 3 mM EDTA and 0.005% (v/v) surfactant β20. Covalent coupling of protein ligands through their free amino groups to the CM5 chip was accomplished by flowing 40 μL of 0.05 M NHS/0.2M EDC over the chip to activate the chip, followed by exposure to the appropriate protein ligand. Affinity purified antibodies and normal IgG were immobilized by flowing 100 μL of a 100 μg/mL solution in 10 mM acetate, (pH 4.8) over the NHS activated CM5 chip. The excess reactive groups on the chip surface are then quenched with 40 μL of 1 M ethanoloamine, (pH 8.5).
Titrations. Baculovirus expressed domain 1 of β2-GPI and the tetrameric compound 44 were diluted with HBS-EP, flowed over the chip, and response values were collected for 780 seconds. The chips were regenerated between sample exposures with 80 μL of 0.1 M glycine-HCl (pH 2.1), 0.1 M NaCl. A series of five titrations was done for each sample. Since the approach to binding equilibrium was incomplete during the measurement period, the equilibrium binding value (Req) was determined by fitting the association curves to the following equation using the manufacturer software (BiaEvaluation version 2.2, Uppsala, Sweden)):

Rt=Req(1−e−ks(t−t0))+R0 

where Rt is the measured BIAcore response at time t, Req is the equilibrium plateau response, t is time, t0 is initial time, ks is an apparent association constant (ks=kaC+kdis where ka is the association constant, C is the analyte concentration and kdis is the dissociation constant), and R0 is a response offset, (Marquart-Levenberg algorithm).

Each titration association curve has the negative control (normal IgG) cell background for that titration subtracted. The calculated Req were plotted versus concentration using GraphPad Prism software version 2.01. The data are fit to a one site binding (rectangular hyperbola: Y=Bmax* X/[Kd+X]) and Kd values calculated in molar units. The molar concentrations of domain 1 and compound 44 were determined by absorbance at 280 nm and an extinction coefficient of 1.85.
Results and Discussion
Affinity purified antibodies from patients 6701 and 6626 were immobilized in separate microfluidic chambers and exposed to varying concentrations of human β2GPI domain 1 or compound 44. The equilibrium binding value was determined for each concentration and plotted to determine the apparent equilibrium dissociation constant. The binding isotherms are shown in FIGS. 10 and 11 (extinction coefficient=1.85; 100 μg/ml immobilized antibody) and the dissociation constants are indicated in Table 8.
These experiments demonstrate that affinity purified antiphospholipid antibodies bind to domain 1 of β2GPI. In addition, they demonstrate that tetrameric conjugates of a domain 1β2GPI polypeptide linked to a platform are also capable of binding to these antibodies with affinities that are equivalent to or greater than the molar concentration of domain 1 present in the tetramer.









TABLE 8









Apparent equilibrium dissociation constants for domain 1 and



compound 44 binding to affinity purified



antiphospholipid antibodies











Patient
Domain 1
Compound 44







6626
333 ± 18 nM
66 ± 23 nM



6701
417 ± 36 nM
24 ± 9










Example 7: Testing Domain 1 β2GPI Polypeptide Conjugates for Competitive Antibody Binding in Vitro
Nunc Maxisorp microplates (Nalge Nunc International, Denmark) were coated with 100 μL/well of β2GPI at 2.5 μg/mL in PBS, incubated for 2 hours at room temperature, and blocked for 2 hours at room temperature with 250 μl/well of 2% nonfat milk with 0.4 Tween-80 (Sigma Chemical Co.). Following five washes with TBS, to each well was added 100 μL of a solution prepared less than one hour earlier designed to deliver per well 1:200 final dilution of plasma from patient 6501 and variable amounts of tetrameric domain 1 conjugates compound 44 and compound 45 or control domain 1 monomers all in 2% nonfat milk with 0.4% Tween-80. After incubation for one hour at room temperature the plates were washed 5× with TBS. To each well was added 100 μL of alkaline phosphatase-conjugated anti-human IgG, gamma chain specific (Zymed) diluted 1:1000 in 2% nonfat milk with 0.4% Tween-80. After one hour at room temperature the plates were washed 5× with TBS. To each well was added 100 μl PPMP chromogenic substrate solution for color development at room temperature. Optical absorbance per well was determined at A550nm in a commercial microplate reader (Bio-Tek Instruments EL3 11). The results shown in FIG. 12 indicate that both compounds 44 and 45, effectively compete for antiphospholipid antibody present in serum (patient 6501). Reduced and alkylated domain 1 displays no such competition and is a negative control. Competitive binding is also exhibited by regular, monomeric domain 1 and is included as a positive control.
Example 8
Immunized Mouse Model to Test Domain 1 B2GPI Polypeptid Conjugates
The requirements of an immunized model to test for tolerance to domain 1 B2GPI polypeptides are: (1) the immunization must engender antibodies that recognize domain 1 and (2) the immunization must not engender T cells that recognize domain 1. Immunization with the domain 1 polypeptides-KLH conjugate engenders T cells that recognize KLH but not detectable reactivity to domain 1. To this end we have made, in the insect cell system, a domain 1 β2GPI polypeptide that contains a fifth cysteine at the carboxyl terminus (amino acid 1 to amino acid 66 of SEQ ID NO: 1). This molecule has been covalently attached to KLH via the fifth cysteine. This conjugate has been used to immunize mice. Immunization with the domain 1-KLH conjugate engenders T cells that recognize KLH but not detectable reactivity to domain 1. On the other hand, immunization with the domain 1-KLH conjugate does result in the production of domain 1 specific antibodies.
Materials and Methods
ELISA to Detect Anti-Domain 1 Antibody
NUNC microtiter wells were coated with 50 μl of B2GPI at 5 μg/ml in 0.1 M bicarbonate (pH 9.5), overnight. The wells were washed with PBS and then blocked for one hour with 2% Nonfat dry milk (NFDM). The wells were washed and 50 μl of serial dilutions, in 2% NFDM, of individual mouse serum was added, incubated at room temperature for one hour, washed and 50 Ill of alkaline phosphatase conjugated anti-mouse IgG was added, incubated one hour at room temperature, washed and 50 μl of substrate added. The OD at 550 nm was read after 30 minutes. A pool was made of the serum from the mice that had been primed with 50 μg of the conjugate. This pool was tested in all assays and the results are expressed as a percent of this standard pool.
Competitive Inhibition ELISA
NUNC Microplates were coated with 50 μl of recombinant β2GPI at 5 μg/ml in 0.1 M bicarbonate, pH 9.5, incubated overnight at 4° C., washed three times with 0.15 M PBS (pH 7.2), and blocked for one hour at room temperature with 75 μl of 2% Non-fat dried milk in PBS (2% NFDM). Test inhibitors were diluted in 2% NFDM and 25 ill of each dilution or NFDM alone was added to coated wells. Monoclonal antibody was diluted in 2% NFDM and 25 μl of a constant concentration was added to the wells. The contents of the wells were mixed and the plates were incubated at room temperature for one hour. After the plates were washed three times with PBS, 50 μl of alkaline phosphatase conjugated anti-mouse IgG, gamma chain specific, diluted appropriately in 2% NFDM was added and incubated at 37° C. for one hour. After the plates were washed three times with PBS, 50 μl of alkaline phosphatase chromogenic substrate were added and the plates incubated for 30 minutes at 20° C. The A550 was measured in a microplate autoreader. The percent inhibition was determined as follows: [(mean A550 obtained from the control wells without inhibitor less A550 of background)−(A550 to obtained in the presence of inhibitor less A550 of background)−(mean A550 obtained from the control wells without inhibitor less A550 of background)] times 100.
Immunized Mouse Model for Anti-Domain 1 Antibodies
Groups of 5 C57B116 mice were primed with either 10, 50 or 100 μg of the KLH-Domain 1 conjugate adsorbed to alum plus 2×109 pertussis organisms as an adjuvant. Three weeks later all of the mice were boosted with 10 μg of the conjugate in saline. Seven days after the boost the mice were bled, serum harvested and tested for anti-domain 1 activity. The results are shown in FIG. 14. Immunization with domain 1-KLH did not generate a domain 1-specific antibody response.
Mouse Immunization and T Cell Proliferation Assay
C57B1/6 mice were injected in the hind footpad with 25 μg of domain 1 (D1)-KLH conjugate emulsified in complete Freunds adjuvant (CFA). Another group of mice was injected in the hind footpad with emulsified CFA (no antigen). Seven days later the popliteal lymph nodes were harvested from 5 mice of each group. Nodes from like immunizations were pooled and single cell suspensions made. The cells were cultured as described above for the human cells except the test antigens were D1-KLH, KLH and domain 1 (not conjugated). PPD was used as a positive control. On day 4, 25 μl of 3H-thymidine containing 1 μCi was added to each well. On day 5 the contents of the wells were harvested and the amount of radioactivity in each was determined. A Stimulation Index (SI) was calculated for each well by dividing the CPM of the well by the mean CPM of the negative controls. The mean (and standard deviation) SI for each of the duplicates was determined.
Results and Discussion
The specificity of the polyclonal mouse anti-KLH-Domain 1 conjugate was determined by a competitive inhibition ELISA assays. Various recombinant forms of β2GPI were mixed with limiting amounts of antibody in wells that had been coated with β2GPI. The amount of antibody that remained bound to the wells was then detected with an alkaline phosphatase conjugated second antibody. The percent inhibition was determined, as described in the methods section, and plotted vs. the molar concentration of the inhibitor. The results are shown in FIG. 15. Immunization with the same conjugate does generate an antibody response that is specific for domain 1 (FIG. 15).
With respect to T cell proliferation, the results shown in FIG. 13 demonstrate that the cells from domain 1-KLH primed mice proliferated in response to both domain 1-KLH and KLH as well as the positive control PPD. They did not respond to domain 1 (non-conjugated). On the other hand the cells from the CFA only primed mice did not respond to the test antigens but did respond to the positive control PPD.
For an immunized mouse model, namely, that the priming must not prime T cells that recognize a given tolerogen but must generate memory B cells that will recognize the tolerogen, both of the two basic requirements for an immunized mouse model have been accomplished in the immunized mouse model presented here.
Example 9
Testing Domain 1 β2GPI Polypeptide as a Toleragen in Vivo
Mice are primed with a domain 1 β2GPI polypeptide conjugated to keyhole limpet hemocyanin (KLH) on alum plus pertussis as an adjuvant as described above. Three weeks later, the mice are treated with a range of doses of toleragen, which may or may not be conjugated to a platform. One group is not treated and acts as a control group. Five days later, all of the mice, including the control group, are boosted with 10 μg of domain 1 β2GPI polypeptide conjugated to KLH and seven days later the mice are bled. Their sera are analyzed for anti-β2GPI domain 1 antibodies by any known method, including, for example, ELISA as described in the preceding examples. These values are then used to determine a mean and standard deviation for all individuals of a group.
Example 10
Testing T Cell Reactivity
Establishing the lack of T cell reactivity to a domain 1 β2GPI polypeptide would indicate that, as a toleragen, it does not supply any epitopes for a second signal to B cells from T cells. Conversely, if the toleragen provided a proliferation (activation) signal to T cells, it is possible that the toleragen would exacerbate B cell response.
To determine T cell activation, circulating lymphocytes are collected and placed in tissue culture. The domain 1 β2GPI polypeptide(s) to be tested is added to the culture for approximately one week. At the end of the week, T cells are pulsed with 3H-thymidine to determine if there has been cellular proliferation. Optionally, presence of cytokines in the tissue culture supernatant is also determined.
Example 11
Anti β2-GPI Antibodies Contribute to Hyperrcoagulation by Delaying the Inactivation of Factor Va
Methods
Activated factor V (factor Va) levels were determined in normal human plasma after the initiation of clotting in the presence and absence of affinity purified antibodies or total IgG preparations from patients diagnosed with antiphospholipid syndrome (APS). The affinity-purified antibodies were characterized as anti β2-GPI domain 1. Total IgG was prepared from patient serum as described below.
Measurement of factor Va levels, was determined in a modified two-stage clotting assay using an Amelung KC4A microcoagulometer as follows. Fifty μl factor V deficient human plasma (Chromogenix) was pre-incubated for 1 minute at 37° C. in a spinning microcuvette. Samples were diluted 1:10 with pre-warmed (37° C.) Owren's Buffer (Sigma). Fifty μl of the diluted sample was added to the 50 μl of V deficient plasma. One hundred μl of 37° C. ThromboMAX plus calcium (Sigma) was added to initiate clotting. Time to clot was recorded. One unit of Va activity is defined as the time to clot for the V deficient plasma with 1:10 dilution of normal reference human plasma (Accuclot, Sigma). One unit of factor Va activity in this experimental system corresponds to a clot time of approximately 30 seconds.
To determine the amount of factor Va being generated over time in the presence or absence of antiphospholipid antibody or IgG the following system was used to generate the samples tested in the above standard assay. The following reagents were mixed and incubated at 37° C.: one part normal human reference plasma (Accuclot, Sigma), one part 25 mM CaCl2 and one part consisting of phosphatidyl-serine reagent (125 μg/ml) and Tris-buffered saline (TBS) and antibody or IgG (if applicable at the desired concentration). TBS was used to correct for varying volumes of antibody or IgG. The normal plasma, phophatidyl-serine, antibody or IgG (if present) and TBS were mixed and incubated at 37° C. for 2 minutes before the addition of 37° C. CaCl2 to initiate clotting and the clot was removed manually as it formed. The total volume of the sample mixture was dependent on the number of timepoints assayed. At each timepoint 12.5 VI of the incubating sample was removed, diluted 1:10 in Owren's buffer and assayed in the standard factor Va assay above. The levels of Va generated in the sample over time are reflected in a correction of the factor V deficient plasma clotting time. The peak Va levels occur at 4-5 minutes after clotting is initiated and the levels are in the range of 4-7 units of factor Va activity. This corresponds to a clot time of approximately 5-6 seconds in the standard assay for this experimental system.
In cases where APS patient IgG was added to the assay total IgG was prepared from human serum samples by combining 100 μl serum (diluted 1:1 with Pierce Immunopure IgG binding buffer) with 100 μl agarose-immobilized protein G beads (Pierce Immunopure Plus).
The mixture was slowly shaken at ambient temperature for 10 minutes. Protein G binds the Fc region of all subclasses of human immunoglobulin G. After 10 minutes the mixture was centrifuged briefly to pellet the beads. The serum mixture supernatant was discarded.
The beads with bound IgG were then washed three times with 200 μl IgG binding buffer to remove adsorbed proteins. The bound IgG was then eluted from the protein G beads with three times. 100 μl of IgG elution buffer (Pierce, Immunopure IgG elution buffer). The eluted IgG was immediately neutralized with 100 μl 1M NaPO4 pH 7.5, for a total final volume of 400 μl of IgG preparation from the 100 μl plasma sample. Neutralized IgG preparations are stored at 4° C. until analysis.
Protein concentration of IgG preparations was determined by standard microplate Bradford method (Bio-Rad reagent). Five μl of each sample was assayed in triplicate, with a standard curve of bovine serum albumin on each plate. Protein concentrations were calculated by KC4 software.
For analysis in the factor Va clotting assay, 100 μl of the IgG preparation was concentrated to 25 μl with a Microcon centrifugal filter device (Amicon, molecular weight cutoff of 30,000). The entire 25 μl is used for the single timepoint factor Va assay.
Results
The effect of total IgG from antiphospholipid patients and affinity purified antibodies from normal controls was compared for their ability to delay factor Va inactivation in an in vitro coagulation assay. The results for total IgG and affinity purified antibodies are shown in Table 9 and FIG. 16, respectively. IgG and affinity purified antibodies from normal control subjects did not alter the inactivation of factor Va observed at 20 minutes after initiating coagulation. In contrast, the IgG fraction from antiphospholipid patients delayed the inactivation of factor Va (p<0.05 by student's t-test). Similar effects on factor Va inactivation were observed for the affinity purified antibodies. These data suggest that human anti-b2-GPI antibodies can create a hypercoagulative state in part by delaying the inactivation of factor Va.












TABLE 9








20′′ Va
IgG
activity



I.D.
(Units)
(mg)
(Units/mg)


















APS Patient IgG












7308
0.98
0.08
12.25



7309
0.85
0.06
14.17



7310
0.85
0.06
14.17



7311
0.84
0.07
12.00



7312
0.92
0.06
15.33



7313
0.82
0.06
13.67



7314
1.13
0.06
18.83



7315
0.99
0.07
14.14



7316
0.87
0.06
14.50



7317
0.92
0.08
11.50



7318
0.81
0.08
10.13



7319
0.95
0.10
9.50



7320
0.83
0.05
16.60



7321
0.84
0.07
12.00



7322
0.81
0.06
13.50



7323
0.83
0.09
9.76



7301
0.83
0.05
16.60



7302
0.87
0.05
17.40



7303
1.05
0.08
13.13



7304
1.44
0.07
20.57



7305
0.79
0.08
9.88



7306
0.90
0.07
12.86



7307
1.10
0.07
15.71



6501
1.16
0.06
19.33



6636
1.21
0.05
24.20



6625
0.86
0.10
8.60



6646
0.72
0.05
14.40



6623
1.17
0.07
16.71



6510
0.70
0.05
14.00



mean
0.93
0.07
14.33



STD
0.17
0.01
3.55









Normal IgG












N260F
0.77
0.06
12.83



N712M
0.69
0.07
9.86



N266F
0.78
0.09
8.67



N199F
0.79
0.08
9.88



N280M
0.76
0.07
10.86



mean
0.76
0.07
10.42



STD
0.039623
0.011402
1.557503










Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be apparent to those skilled in the art that certain changes and modifications will be practiced. Therefore, the description and examples should not be construed as limiting the scope of the invention, which is delineated by the appended claims.

## Claims

1. A polypeptide comprising a domain 1 β2GPI polypeptide, wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, said polypeptide comprises at least 30 contiguous amino acids of SEQ ID NO:4, and said polypeptide is less than about 75 amino acids in length.

2. The polypeptide of claim 1; wherein the domain 1 β2GPI polypeptide consists of the polypeptide SEQ ID NO:4.

3. The polypeptide of claim 1; wherein the domain 1 β2GPI polypeptide consists of about amino acid 1 to about amino acid 66 of SEQ ID NO:2.

4. A kit comprising the polypeptide of claim 3.

5. The kit of claim 4, wherein the kit is for detecting coagulation.

6. The kit of claim 4, wherein the kit is for detecting an antibody that specifically binds to a domain 1 β2GPI polypeptide.

7. The polypeptide of claim 1, wherein the domain 1 β2GPI polypeptide comprises about amino acid 1 to about amino acid 59 of SEQ ID NO:4.

8. The polypeptide of claim 1, wherein the domain 1 β2GPI polypeptide consists of about amino acid 2 to about amino acid 63 of SEQ ID NO:2.

9. A kit comprising the polypeptide of claim 8.

10. The polypeptide of claim 1, wherein the domain 1 β2GPI polypeptide comprises SEQ ID NO:29.

11. A kit comprising the polypeptide of claim 10.

12. The polypeptide of claim 1, wherein the polypeptide comprises SEQ ID NO: 5, 6, 7, 8, 9, 10, 11, or 12.

13. The polypeptide of claim 1, wherein the polypeptide comprises at least 40 contiguous amino acids of SEQ ID NO:4.

14. The polypeptide of claim 1, wherein the polypeptide further comprises amino acid 40 through amino acid 45 of SEQ ID NO:4, amino acid 38 through amino acid 44 of SEQ ID NO:4, or amino acid 19 of SEQ ID NO:4.

15. The polypeptide of claim 1, wherein the polypeptide comprises at least 40 contiguous amino acids of SEQ ID NO:4.

16. The polypeptide of claim 1, wherein the polypeptide is less than about 60 amino acids in length.

17. A kit comprising the polypeptide of claim 1.

18. A polypeptide comprising a domain 1 β2GPI polypeptide, wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, said polypeptide comprises SEQ ID NOS: 5, 9, 10, 11, or 12, and said polypeptide is less than about 75 amino acids in length.

19. The polypeptide of claim 18, wherein the polypeptide is less than about 50 amino acids in length.

20. The polypeptide of claim 18, wherein the polypeptide is less than about 25 amino acids in length.

21. The polypeptide of claim 18, wherein the polypeptide comprises SEQ ID NO: 5.

22. The polypeptide of claim 18, wherein the polypeptide comprises SEQ ID NO: 9.

23. The polypeptide of claim 18, wherein the polypeptide comprises SEQ ID NO: 10.

24. The polypeptide of claim 18, wherein the polypeptide comprises SEQ ID NO: 11.

25. The polypeptide of claim 18, wherein the polypeptide comprises SEQ ID NO: 12.

26. The polypeptide of claim 18, wherein the polypeptide further comprises at least 10 contiguous amino acids of SEQ ID NO:4.

27. The polypeptide of claim 18; wherein the polypeptide further comprises at least 20 contiguous amino acids of SEQ ID NO:4.

28. The polypeptide of claim 18, wherein the polypeptide further comprises amino acid 40 through amino acid 45 of SEQ ID NO:4, amino acid 38 through amino acid 44 of SEQ ID NO:4, or amino acid 19 of SEQ ID NO:4.

29. The polypeptide of claim 18, wherein the polypeptide is less than about 60 amino acids in length.

30. A kit comprising the polypeptide of claim 18.

31. A polypeptide comprising a domain 1 β2GPI polypeptide, wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, said polypeptide comprises SEQ ID NO:6, SEQ ID NO:8, or SEQ ID NO:7, and said polypeptide is at least 15 amino acids in length and less than 25 amino acids in length.

32. The polypeptide of claim 31, wherein the polypeptide comprises SEQ ID NO:6.

33. The polypeptide of claim 31, wherein the polypeptide comprises SEQ ID NO:7.

34. The polypeptide of claim 31, wherein the polypeptide comprises SEQ ID NO:8.

35. The polypeptide of claim 31, wherein the polypeptide further comprises amino acid 19 of SEQ ID NO:4.

36. The polypeptide of claim 31, wherein the polypeptide comprises further at least 10 contiguous amino acids of SEQ ID NO:4.

37. A kit comprising the polypeptide of claim 31.

38. A method of detecting an antibody which specifically binds to the polypeptide of claim 1 in a sample, comprising (a) contacting antibody in the sample with the polypeptide of claim 1 under conditions that permit the formation of a stable antigen-antibody complex; and (b) detecting stable complex formed in step (a), if any.

39. The method of claim 38, wherein the antibody is a β2GPI-dependent antiphospholipid antibody.

40. A method of purifying a β2GPI-dependent antiphospholipid antibody, comprising contacting a biological sample with the polypeptide of claim 1 under conditions that permit the formation of a stable antigen-antibody complex, and obtaining the complex formed, if any.

41. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the polypeptide of claim 1 to the individual.

42. The method of claim 41, wherein the individual is human.

43. A method for detecting β2GPI-dependent antiphospholipid antibody mediation of coagulation, comprising the steps of:
(a) performing a first coagulation assay using a suitable biological sample from an individual, wherein the polypeptide of claim 1 is added to the assay; 
(b) performing a second coagulation assay using a suitable biological sample from the individual in the absence of the polypeptide of claim 1; 
(c) comparing the assay results of steps (a) and (b), wherein a difference in the results indicates β2GPI-dependent antiphospholipid antibody mediation of coagulation.

44. The polypeptide of claim 3, 8, 10, 1, 18, or 31, wherein the polypeptide lacks a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.

45. A composition comprising an effective amount of the polypeptide of claim 44, wherein an effective amount is an amount sufficient to induce tolerance.

46. The composition of claim 45, further comprising a pharmaceutically acceptable excipient.

47. A polymeric polypeptides comprising a plurality of the polypeptide of claim 3, 8, 10, 1, 18, or 31.

48. The polymeric polypeptide of claim 47, wherein the polypeptide lacks a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.

49. The polymeric polypeptide of claim 48, wherein the polymeric polypeptide is a linear polymer.

50. The polymeric polypeptide of claim 48, wherein the polymeric polypeptide is a branched polymer.

51. The polymeric polypeptide of claim 48, wherein the polymeric polypeptide comprises at least two different domain 1 β2GPI polypeptides.

52. The polymeric polypeptide of claim 48 further comprising a polypeptide selected from the group consisting of domain 2 β2GPI; domain 3 β2GPI; and domain 5 β2GPI.

53. A composition comprising the polymeric polypeptide of claim 48 and a pharmaceutically acceptable excipient.

54. A fusion polypeptide comprising the polypeptide of claim 3, 8, 10, 1, 18, or 31.

55. The fusion polypeptide of claim 54, wherein the polypeptide lacks a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.

56. The fusion polypeptide of claim 55, wherein the fusion polypeptide is a linear polymer.

57. The fusion polypeptide of claim 55, wherein the fusion polypeptide is a branched polymer.

58. A composition comprising the fusion polypeptide of claim 55 and a pharmaceutically acceptable excipient.

59. A composition comprising the polypeptide of claim 3, 8, 10, 1, 18 or 31 and a pharmaceutically acceptable excipient.

60. A conjugate comprising a valency platform molecule, and a polypeptide comprising a domain 1 β2GPI polypeptide, wherein said polypeptide comprises at least 6 contiguous amino acids of SEQ ID NO:4, and wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody.

61. The conjugate of claim 60, wherein the platform molecule is proteinaceous.

62. The conjugate of claim 60, wherein the polypeptide comprises at least 10 contiguous amino acids of SEQ ID NO:4.

63. The conjugate of claim 60, wherein the polypeptide comprises at least 20 contiguous amino acids of SEQ ID NO:4.

64. The conjugate of claim 60, wherein the polypeptide comprises at least 30 contiguous amino acids of SEQ ID NO:4.

65. The conjugate of claim 60, wherein the polypeptide comprises at least 60 contiguous amino acids of SEQ ID NO:4.

66. A kit comprising the conjugate of claim 60.

67. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the conjugate of claim 60 to the individual.

68. The method of claim 67, wherein the individual is human.

69. The method of claim 68, wherein the polypeptide consists of the sequence from about amino acid 1 to about amino acid 60 of SEQ ID NO:4.

70. The conjugate of claim 60, wherein the polypeptide comprises SEQ ID NOS: 4, 5, 6, 7, 8, 9, 10, 11 or 12.

71. The conjugate of claim 60, wherein the valency platform molecule is non-proteinaceous.

72. A composition comprising the conjugate of claim 60 and a pharmaceutically acceptable excipient.

73. The conjugate of claim 60, wherein the polypeptide further comprises amino acid 40 through amino acid 45 of SEQ ID NO:4, amino acid 38 through amino acid 44 of SEQ ID NO:4, or amino acid 19 of SEQ ID NO:4.

74. A conjugate comprising a polypeptide comprising a domain 1 β2GPI polypeptide, wherein said polypeptide comprises at least 6 contiguous amino acids of SEQ ID NO:4, and wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, wherein the conjugate further comprises a label.

75. The conjugate of claim 60, 62, 63, 64, or 65 wherein the polypeptide lacks a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.

76. The conjugate of claim 75, wherein the polypeptide comprises SEQ ID NOS: 4, 5, 6, 7, 8, 9, 10, 11 or 12.

77. The conjugate of claim 75, wherein the valency platform molecule is non-proteinaceous.

78. The conjugate of claim 75, wherein the molecular weight of a population of valency platform molecules is homogeneous.

79. The conjugate of claim 75, wherein the platform molecule is linked to the polypeptide by a thioether bond.

80. The conjugate of claim 75, wherein the domain 1 β2GPI polypeptide consists of about amino acid 2 through about amino acid 63 of SEQ ID NO:2.

81. The conjugate of claim 75, wherein the domain 1 β2GPI polypeptide consists of SEQ ID NO:29.

82. The conjugate of claim 81 wherein the platform molecule comprises polyethylene glycol.

83. A composition comprising the conjugate of claim 75 and a pharmaceutically acceptable excipient.

84. The conjugate of claim 75, wherein the polypeptide further comprises amino acid 40 through amino acid 45 of SEQ ID NO:4, amino acid 38 through amino acid 44 of SEQ ID NO:4, or amino acid 19 of SEQ ID NO:4.

85. The conjugate of claim 75 wherein the valency platform molecule comprises polyethylene glycol.

86. A kit comprising the conjugate of claim 75.

87. A conjugate comprising a polypeptide comprising a domain 1 β2GPI polypeptide, wherein said domain 1 β2GPI polypeptide consists of about amino acid 2 through about amino acid 63 of SEQ ID NO:2, wherein said polypeptide specifically binds to a β2GPI-dependent antiphospholipid antibody, and further wherein the polypeptide lacks a T cell epitope, said T cell epitope capable of activating T cells in an individual having β2GPI dependent antiphospholipid antibodies.

88. The conjugate of claim 87; wherein the domain 1 β2GPI polypeptide consists of SEQ ID NO:29.

89. A composition comprising the conjugate of claim 88 a pharmaceutically acceptable excipient.

90. A composition comprising the conjugate of claim 87 and a pharmaceutically acceptable excipient.

91. A kit comprising the conjugate of claim 87.

92. A conjugate comprising a valency platform molecule and a domain 1 β2GPI polypeptide consisting of about amino acid 2 through about amino acid 63 of SEQ ID NO:2.

93. The conjugate of claim 92, wherein the conjugate comprises four of the domain 1 β2GPI polypeptides.

94. A composition comprising the conjugate of claim 93 and a pharmaceutically acceptable excipient.

95. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the conjugate of claim 93 to the individual.

96. The conjugate of claim 92, wherein the domain 1 β2GPI polypeptide consists of SEQ ID NO:29.

97. The conjugate of claim 96, wherein the conjugate comprises four of the domain 1 β2GPI polypeptides.

98. A composition comprising the conjugate of claim 97 and a pharmaceutically acceptable excipient.

99. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the conjugate of claim 97 to the individual.

100. A composition comprising the conjugate of claim 96 and a pharmaceutically acceptable excipient.

101. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the conjugate of claim 96 to the individual.

102. A composition comprising the conjugate of claim 92 and a pharmaceutically acceptable excipient.

103. A method of inducing tolerance in an individual, comprising administering an effective amount of a composition comprising the conjugate of claim 92 to the individual.

104. The method of claim 103, 95, 101, or 99, wherein the individual is human.