UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549





FORM 10-Q/A

Amendment No. 1





(Mark One)

|þ | Quarterly Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934
|- | ---------------------------------------------------------------------------------------

For the quarterly period ended June 30, 2011

OR



| ̈ | Transition Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934
|- | ----------------------------------------------------------------------------------------

For the transition period from              to

Commission File Number 000-49834





GEN-PROBE INCORPORATED

(Exact Name of Registrant as Specified in Its Charter)







|                                                               |  |                                        
|-------------------------------------------------------------- |  | ---------------------------------------
|Delaware                                                       |  | 33-0044608                             
|(State or other jurisdiction of incorporation or organization) |  | (I.R.S. Employer Identification Number)
|                                                               | 
|10210 Genetic Center Drive San Diego, CA                       |  | 92121                                  
|(Address of Principal Executive Offices)                       |  | (Zip Code)                             

(858) 410-8000

(Registrants Telephone Number, Including Area Code)





Indicate by
check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to
file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes  þ    No   ̈

Indicate by check mark whether the registrant has submitted electronically and
posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such shorter period that the registrant was required to submit
and post such files).    Yes  þ    No   ̈

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer or a smaller
reporting company. See the definitions of large accelerated filer, accelerated filer and smaller reporting company in Rule 12b-2 of the Exchange Act. (Check one):



|                        |  |                                                  |  |                           |  |  
|----------------------- |  | ------------------------------------------------ |  | ------------------------- |  | -
|Large accelerated filer |  | þ                                                |  | Accelerated filer         |  |  ̈
|                        |  |                                                  | 
|Non-accelerated filer   |  |  ̈  (Do not check if a smaller reporting company) |  | Smaller Reporting Company |  |  ̈

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the
Exchange Act).    Yes   ̈    No  þ

As of July 29, 2011, 48,181,831 shares of the registrants common stock, $0.0001 par value per share, were outstanding.









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EXPLANATORY NOTE

Gen-Probe Incorporated (Gen-Probe or the Company) is filing this amendment to its quarterly report on Form 10-Q
(the Form 10-Q), originally filed with the Securities and Exchange Commission (the SEC) on August 3, 2011, as an exhibit-only filing solely for the purpose of amending Exhibits 10.4 and 10.5 filed with the Form 10-Q to
reflect changes made to portions of Exhibits 10.4 and 10.5. No other information included in the Form 10-Q is amended by this Form 10-Q/A. The Company has also included Exhibits 31.3 and 31.4 as required by the filing of this amendment to the Form
10-Q.

Except as described above, this amendment does not reflect events occurring after the filing of the original Form 10-Q
and no revisions are being made pursuant to this amendment to the Companys financial statements or any other disclosure contained in the Form 10-Q.

PART II  OTHER INFORMATION

Item 6. Exhibits



|               |  |                                                                                                                                                                                                                                          
|-------------- |  | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|Exhibit
Number |  | Description                                                                                                                                                                                                                              
|               | 
|2.1(1)         |  | Agreement and Plan of Merger, dated as of October 6, 2009, by and among Gen-Probe Incorporated, Prodigy Acquisition Corp., Prodesse, Inc. and Thomas M. Shannon and R. Jeffrey
Harris, as the Securityholders Representative Committee.*
|               | 
|3.1(2)         |  | Form of Amended and Restated Certificate of Incorporation of Gen-Probe Incorporated.                                                                                                                                                     
|               | 
|3.2(3)         |  | Certificate of Amendment of Amended and Restated Certificate of Incorporation of Gen-Probe Incorporated.                                                                                                                                 
|               | 
|3.3(4)         |  | Amended and Restated Bylaws of Gen-Probe Incorporated.                                                                                                                                                                                   
|               | 
|3.4(5)         |  | Certificate of Elimination of Series A Junior Participating Preferred Stock of Gen-Probe Incorporated.                                                                                                                                   
|               | 
|4.1(2)         |  | Specimen common stock certificate.                                                                                                                                                                                                       
|               | 
|10.1(6)n       |  | The 2003 Incentive Award Plan of Gen-Probe Incorporated (as last amended effective as of May 19, 2011).                                                                                                                                  
|               | 
|10.2(7)        |  | Amendment No. 4 to Credit Agreement dated as of June 24, 2011 by and between Gen-Probe Incorporated, as Borrower, and Bank of America, N.A., as Lender.                                                                                  
|               | 
|10.3(7)        |  | Amendment No. 2 to Development Agreement for Panther Instrument System dated as of January 2, 2009 by and between Gen-Probe Incorporated and Stratec Biomedical Systems
AG.**                                                            
|               | 
|10.4          |  | Amendment No. 3 to Development Agreement for Panther Instrument System dated as of February 1, 2011 by and between Gen-Probe Incorporated and Stratec Biomedical Systems
AG.**                                                           
|               | 
|10.5          |  | Amendment No. 4 to Development Agreement for Panther Instrument System dated as of February 1, 2011 by and between Gen-Probe Incorporated and Stratec Biomedical Systems
AG.**                                                           
|               | 
|31.1(7)        |  | Certification dated August 3, 2011, of Principal Executive Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of
2002.                                                    
|               | 
|31.2(7)        |  | Certification dated August 3, 2011, of Principal Financial Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of
2002.                                                    
|               | 
|31.3          |  | Certification dated November 9, 2011, of Principal Executive Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of
2002.                                                  



---

|        |  |                                                                                                                                                                                        
|------- |  | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|        | 
|31.4   |  | Certification dated November 9, 2011, of Principal Financial Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act
of 2002.
|        | 
|32.1(8) |  | Certification dated August 3, 2011, of Principal Executive Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of
2002.  
|        | 
|32.2(8) |  | Certification dated August 3, 2011, of Principal Financial Officer required pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of
2002.  
|        | 
|101(8)  |  | Interactive Data Files pursuant to Rule 405 of Regulation S-T.                                                                                                                         



| | Filed herewith.
|- | ---------------

|n | Indicates management contract or compensatory plan, contract or arrangement.
|- | ----------------------------------------------------------------------------

|* | Gen-Probe has received confidential treatment with respect to certain portions of this exhibit.
|- | -----------------------------------------------------------------------------------------------

|** | Gen-Probe has requested confidential treatment with respect to certain portions of this exhibit.
|-- | ------------------------------------------------------------------------------------------------

|(1) | Incorporated by reference to Gen-Probes Annual Report on Form 10-K filed with the SEC on February 25, 2010.
|--- | ------------------------------------------------------------------------------------------------------------

|(2) | Incorporated by reference to Gen-Probes Amendment No. 2 to Registration Statement on Form 10 (File No. 000-49834) filed with the SEC on August 14, 2002.
|--- | ---------------------------------------------------------------------------------------------------------------------------------------------------------

|(3) | Incorporated by reference to Gen-Probes Quarterly Report on Form 10-Q (File No. 001-31279) for the quarterly period ended June 30, 2004 filed with the
SEC on August 9, 2004.
|--- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

|(4) | Incorporated by reference to Gen-Probes Current Report on Form 8-K filed with the SEC on February 18, 2009.
|--- | ------------------------------------------------------------------------------------------------------------

|(5) | Incorporated by reference to Gen-Probes Annual Report on Form 10-K for the year ended December 31, 2006 filed with the SEC on February 23, 2007.
|--- | -------------------------------------------------------------------------------------------------------------------------------------------------

|(6) | Incorporated by reference to Gen-Probes Current Report on Form 8-K filed with the SEC on May 25, 2011.
|--- | -------------------------------------------------------------------------------------------------------

|(7) | Filed with the SEC as part of the original Form 10-Q on August 3, 2011.
|--- | -----------------------------------------------------------------------

|(8) | Furnished with the SEC as part of the original Form 10-Q on August 3, 2011.
|--- | ---------------------------------------------------------------------------



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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.



|                       |  |  |  |                        |  |                                                                                                                           
|---------------------- |  |  |  | ---------------------- |  | --------------------------------------------------------------------------------------------------------------------------
|                       |  |  |  | GEN-PROBE INCORPORATED
|                       |  |  | 
|DATE: November 9, 2011 |  |  |  | By:                    |  | /s/    CARL W.
HULL                                                                                                       
|                       |  |  |  |                        |  | Carl W. Hull                                                                                                              
|                       |  |  |  |                        |  | President, Chief Executive Officer and Director
(Principal Executive Officer)                                             
|                       |  |  | 
|DATE: November 9, 2011 |  |  |  | By:                    |  | /s/    HERM
ROSENMAN                                                                                                      
|                       |  |  |  |                        |  | Herm Rosenman                                                                                                             
|                       |  |  |  |                        |  | Senior Vice President  Finance and Chief
Financial Officer (Principal Financial Officer and Principal Accounting Officer)