# Patent

## Title
Method for preparing flour doughs and products made from such doughs using lipase

## Abstract

Method of improving the rheological properties of a flour dough and the quality of bread, alimentary paste products, noodles and cakes wherein glycerol oxidase or a combination of glycerol oxidase and a lipase is added to the dough and dough improving compositions comprising these enzymes. The strength of (B/C ratio) and the gluten index of the dough was improved and in the resulting products the improvements were higher specific volume, increased crumb pore homogeneity and reduced average crumb pore diameter.

## Background
This application is a division of Ser. No. 09/402,664 filed Oct. 22, 1999 now U.S. Pat. No. 6,406,723, which is a 371 of PCT/DK98/00136 filed Apr. 3, 1998.


FIELD OF THE INVENTION
The present invention relates to the field of food manufacturing, in particular to the preparation of improved bakery products and other farinaceous food products. Specifically, the invention concerns the use of glycerol oxidase as a dough strengthening agent and improvement of the quality of baked and dried products made from such improved doughs. There is also provided a method of improving the properties of doughs and baked product by combined use of glycerol oxidase and a lipase.
TECHNICAL BACKGROUND AND PRIOR ART
The “strength” or “weakness” of doughs are an important aspect of making farinaceous finished products from doughs, including baking. The “strength” or “weakness” of a dough is primarily determined by its content of protein and in particular the content and quality of the gluten protein is an important factor in that respect. Flours with a low protein content are generally characterized as “weak.” Thus, the cohesive, extensible, rubbery mass which is formed by mixing water and weak flour will usually be highly extensible when subjected to stress, but it will not return to its original dimensions when the stress is removed.
Flours with a high protein content are generally characterized as “strong” flours and the mass formed by mixing such a flour and water will be less extensible than the mass formed from a weak flour, and stress which is applied during mixing will be restored without breakdown to a greater extent than is the case with a dough mass formed from a weak flour. Strong flour is generally preferred in most baking contexts because of the superior rheological and handling properties of the dough and the superior form and texture qualities of the finished baked or dried products made from the strong flour dough.
Doughs made from strong flours are generally more stable. Stability of a dough is one of the most important characteristics of flour doughs. Within the bakery and milling industries it is known to use dough “conditioners” to strengthen the dough to increase its stability and strength. Such dough conditioners are normally non-specific oxidizing agents such as e.g. iodates, peroxides, ascorbic acid, K-bromate or azodicarbonamide and they are added to dough with the aims of improving the baking performance of flour to achieve a dough with improved stretchability and thus having a desirable strength and stability. The mechanism behind this effect of oxidizing agents is that the flour proteins, in particular gluten contains thiol groups which, when they become oxidized, form disulphide bonds whereby the protein forms a more stable matrix resulting in a better dough quality and improvements of the volume and crumb structure of the baked products.
However, the use of several of the currently available non-specific oxidizing agents is either objected to by consumers or is not permitted by regulatory bodies. Hence it has been attempted to find alternatives to these conventional flour and dough additives, and the prior art has i.a. suggested the use of glucose oxidase and hexose oxidase for this purpose.
Glycerol oxidase is an oxidoreductase which is capable of oxidizing glycerol. Different types of glycerol oxidase have been described in the literature. Some of these glycerol oxidases need co-factors in order to oxidize glycerol (Shuen-Fu et al., 1996. Enzyme Micro. Technol., 18:383-387).
However, glycerol oxidase from Aspergillus japonicus does not require any co-factors in the oxidation of glycerol to glyceraldehyde (T. Uwajima and O. Terada, 1980. Agri. Biol. Chem. 44:2039-2045).
This glycerol oxidase has been characterized by T. Uwajima and O. Terada (Methods in Enzymology, 1982, 89:243-248) and T. Uwajima et al. (Agric. Biol. Chem., 1979, 43:2633-2634), and has a pH optimum at 7.0 and Km and Vmax are 10.4 mM and 935.6 μmol H2O2 min−1 respectively using glycerol as substrate. The enzyme is most active on glycerol but also other substrates like dihydroxyacetone, 1,3-propanediol, D-galactose ad D-fructose are oxidized by glycerol oxidase.
Glycerol oxidase not requiring co-factors has also been isolated from Penicillium and characterized by Shuen-Fuh Lin et al. (Enzyme Micro. Technol., 1996, 18:383-387). This enzyme has optimum activity in the pH range from 5.5 to 6.5 at 30° C. The enzyme is stable between 20 and 40° C. but loses its activity at temperatures above 50° C.
Other potential sources for glycerol oxidase according to the invention include different fungal species as disclosed in DE-2817087-A, such as Aspergillus oryzae, Aspergillus parasiticus, Aspergillus flavus, Neurospora crassa, Neurospora sitophila, Neurospora tetrasperma, Penicillium nigricans, Penicillium funiculosum and Penicillium janthinellum. 
Glycerol oxidase isolated from the above natural sources has been used for different applications. Thus, glycerol oxidase from Aspergillus japonicus has been used for glycoaldehyde production from ethylene glycol (Kimiyasu Isobe and Hiroshi Nishise, 1995, Journal of Molecular Catalysis B: Enzymatic, 1:37-43). Glycerol oxidase has also been used in the combination with lipoprotein lipase for the determination of contaminated yolk in egg white (Yioshinori Mie, 1996. Food Research International, 29:81-84). DE-2817087-A and U.S. Pat. No. 4,399,218 disclose the use of glycerol oxidase for the determination of glycerol.
It has now been found that the addition of a glycerol oxidase to a flour dough results in an increased resistance hereof to deformation when the dough is stretched, i.e. this enzyme confers to the dough an increased strength whereby the dough becomes less prone to mechanical deformation. Accordingly, glycerol oxidase is highly useful as a dough conditioning agent in the manufacturing of flour dough based products including not only bread products but also other products made from flour doughs such as noodles and alimentary paste products.
It has also been found that the dough strengthening effect of glycerol oxidase is potentiated significantly when it is combined with a lipase, which in itself does not affect the dough strength. Furthermore, the combined use of glycerol oxidase and lipase results in an improvement of bread quality, in particular in respect of specific volume and crumb homogeneity, which is not a simple additive effect, but reflects a synergistic effect of these two types of enzymes.
SUMMARY OF THE INVENTION
Accordingly, the invention relates in a first aspect to a method of improving the rheological properties of a flour dough and the quality of the finished product made from the dough, comprising adding to the dough 10 to 10,000 units of a glycerol oxidase per kg of flour.
In a further aspect there is provided a method of improving the rheological properties of a flour dough and the quality of the finished product made from the dough, comprising adding to the dough a glycerol oxidase and a lipase.
The invention pertains in a still further aspect to dough improving composition comprising a glycerol oxidase and at least one further dough ingredient or dough additive.
In still further aspects, the invention relates to the use of a glycerol oxidase for improving the rheological properties of a flour dough and the quality of the finished product made from the dough and to the use of a glycerol oxidase and a lipase in combination for improving the rheological properties of a flour dough and the quality of the finished product made from the dough.
DETAILED DISCLOSURE OF THE INVENTION
In one aspect, the present method provides a method of improving the rheological properties of flour doughs.
The expression “rheological properties” as used herein refers particularly to the effects of dough conditioners on dough strength and stability as the most important characteristics of flour doughs. According to American Association of Cereal Chemists (AACC) Method 36-01A the term “stability” can be defined as “the range of dough time over which a positive response is obtained and that property of a rounded dough by which it resists flattening under its own weight over a course of time”. According to the same method, the term “response” is defined as “the reaction of dough to a known and specific stimulus, substance or set of conditions, usually determined by baking it in comparison with a control”
As it is mentioned above, it is generally desirable to improve the baking performance of flour to achieve a dough with improved stretchability and thus having a desirable strength and stability by adding oxidizing agents which cause the formation of protein disulphide bonds whereby the protein forms a more stable matrix resulting in a better dough quality and improvements of the volume and crumb structure of baked products.
Thus, the term “rheological properties” relates to the above physical and chemical phenomena which in combination will determine the performance of flour doughs and thereby also the quality of the resulting products.
The method comprises, as it is mentioned above, the addition of an effective amount of a glycerol oxidase to the dough. It will be understood that the addition can be either to a component of the dough recipe or to the dough resulting from mixing all of the components for the dough. In the present context, “an effective amount” is used to indicate that the amount is sufficient to confer to the dough and/or the finished product improved characteristics as defined herein. Specifically, such an amount is in the range of 10 to 10,000 units of glycerol oxidase per kg flour.
In one useful embodiment of the method according to the invention, the glycerol oxidase can, as it is described in details herein, be isolated from a bacterial species, a fungal species, a yeast species, an animal cell including a human cell or a plant cell. Examples of glycerol oxidase producing fungal species are species belonging to the genera Aspergillus, Neurospora and Penicillium, such as A. japonicus, A. oryzae, A. parasiticus, A. flavus, Neurospora crassa, N. sitophila, N. tetrasperma, Penicillium nigricans, P. funiculosum and P. janthinellum. 
Glycerol oxidase can be derived as a native enzyme from natural sources such as the above.
It is one objective of the invention to provide improved bakery products. In accordance with the invention, a bakery product dough including a bread dough is prepared by mixing flour with water, a leavening agent such as yeast or a conventional chemical leavening agent, and an effective amount of glycerol oxidase under dough forming conditions. It is, however, within the scope of the invention that further components can be added to the dough mixture.
Typically, such further dough components include conventionally used dough components such as salt, sweetening agents such as sugars, syrups or artificial sweetening agents, lipid substances including shortening, margarine, butter or an animal or vegetable oil, glycerol and one or more dough additives such as emulsifying agents, starch degrading enzymes, cellulose or hemicellulose degrading enzymes, proteases, lipases, non-specific oxidizing agents such as those mentioned above, flavouring agents, lactic acid bacterial cultures, vitamins, minerals, hydrocolloids such as alginates, carrageenans, pectins, vegetable gums including e.g. guar gum and locust bean gum, and dietary fiber substances.
Conventional emulsifying agents used in making flour dough products include as examples monoglycerides, diacetyl tartaric acid esters of mono- and diglycerides of fatty acids, and lecithins e.g. obtained from soya. Among starch degrading enzymes, amylases are particularly useful as dough improving additives. Other useful starch degrading enzymes which may be added to a dough composition include glucoamylases and pullulanases. In the present context, further interesting enzymes are xylanases and oxidoreductases such as glucose oxidase, pyranose oxidase, hexose oxidase, sulfhydryl oxidase, and lipases.
A preferred flour is wheat flour, but doughs comprising flour derived from other cereal species such as from rice, maize, barley, rye and durra are also contemplated.
In accordance with the invention, the dough is prepared by admixing flour, water, the glycerol oxidase and optionally other ingredients and additives. The glycerol oxidase can be added together with any dough ingredient including the water or dough ingredient mixture or with any additive or additive mixture. The dough can be prepared by any conventional dough preparation method common in the baking industry or in any other industry making flour dough based products.
The glycerol oxidase can be added as a liquid preparation or in the form of a dry powder composition either comprising the enzyme as the sole active component or in admixture with one or more other dough ingredients or additive.
The amount of the glycerol oxidase added is an amount which results in the presence in the dough of 10 to 5,000 units (as defined in the following) such as 10 to 2,500 units per kg of flour. In useful embodiments, the amount is in the range of 20 to 1,500 units per kg of flour.
The effect of the glycerol oxidase on the rheological properties of the dough can be measured by standard methods according to the International Association of Cereal Chemistry (ICC) and the American Association of Cereal Chemistry (AACC) including the amylograph method (ICC 126), the farinograph method (AACC 54-21) and the extensigraph method (AACC 54-10). The AACC method 54-10 defines the extensigraph in the following manner: “the extensigraph records a load-extension curve for a test piece of dough until it breaks. Characteristics of load-extension curves or extensigrams are used to assess general quality of flour and its responses to improving agents”. In effect, the extensigraph method measures the relative strength of a dough. A strong dough exhibits a higher and, in some cases, a longer extensigraph curve than does a weak dough.
In a preferred embodiment of the method according to the invention, the resistance to extension of the dough in terms of the ratio between the resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough not containing glycerol oxidase. In more preferred embodiments, the resistance to extension is increased by at least 20%, such as at least 50% and in particular by at least 100%.
It has been found that the addition of glycerol oxidase to bakery product doughs results in bakery products such as yeast leavened and chemically leavened products in which the specific volume is increased relative to an otherwise similar bakery product, prepared from a dough not containing glycerol oxidase. In this context, the expression “specific volume” is used to indicate the ratio between volume and weight of the product. It has been found that, in accordance with the above method, the specific volume can be increased significantly such as by at least 10%, preferably by at least 20%, including by at least 30%, preferably by at least 40% and more preferably by at least 50%.
The method according to the invention is highly suitable for improving the rheological properties and quality of the finished products of conventional types of yeast leavened bread products based on wheat flour, such as loaves and rolls. The method is also suitable for improving the rheological properties of doughs containing chemical leavening agents (baking powder) and the quality of products made from such doughs. Such product include as examples sponge cakes and muffins.
In one interesting aspect, the invention is used to improve the rheological properties of doughs intended for noodle products including “white noodles” and “chinese noodles” and to improve the textural qualities of the finished noodle products. A typical basic recipe for the manufacturing of noodles comprises the following ingredients: wheat flour 100 parts, salt 0.5 parts and water 33 parts. Furthermore, glycerol is often added to the noodle dough. The noodles are typically prepared by mixing the ingredients in an appropriate mixing apparatus followed by rolling out the noodle dough using an appropriate noodle machine to form the noodle strings which are subsequently air dried.
The quality of the finished noodles is assessed i.a. by their colour, cooking quality and texture. The noodles should cook as quickly as possible, remain firm after cooking and should preferably not loose any solids to the cooking water. On serving the noodles should preferably have a smooth and firm surface not showing stickiness and provide a firm “bite” and a good mouthfeel. Furthermore, it is important that the white noodles have a light colour.
Since the appropriateness of wheat flour for providing noodles having the desired textural and eating qualities may vary according to the year and the growth area, it is usual to add noodle improvers to the dough in order to compensate for sub-optimal quality of the flour. Typically, such improvers will comprise dietary fiber substances, vegetable proteins, emulsifiers and hydrocolloids such as e.g. alginates, carrageenans, pectins, vegetable gums including guar gum and locust bean gum, and amylases, and as mentioned above, glycerol.
It is therefore an important aspect of the invention that the glycerol oxidase according to the invention is useful as a noodle improving agent optionally in combination with glycerol and other components currently used to improve the quality of noodles. Thus, it is contemplated that noodles prepared in accordance with the above method will have improved properties with respect to colour, cooking and eating qualities including a firm, elastic and non-sticky texture and consistency.
In a further useful embodiment, the dough which is prepared by the method according to the invention is a dough for preparing an alimentary paste product. Such products which include as examples spaghetti and maccaroni are typically prepared from a dough comprising main ingredients such as flour, eggs or egg powder and/or water. After mixing of the ingredient, the dough is formed to the desired type of paste product and air dried. It is contemplated that the addition of glycerol oxidase to a paste dough, optionally in combination with glycerol, will have a significant improving effect on the extensibility and stability hereof resulting in finished paste product having improved textural and eating qualities.
In a useful embodiment, there is provided a dough improving method wherein at least one further enzyme is added to the dough ingredient, dough additive or the dough. In the present context, suitable enzymes include cellulases, hemicellulases, xylanases, starch degrading enzymes, oxidoreductases and proteases.
In a further aspect, the invention relates to a method of improving the rheological properties of a flour dough and the quality of the finished products made from the dough which comprises that both a glycerol oxidase and a lipase is added to the dough.
It was surprisingly found that the two types of enzymes were capable of interacting with each other under the dough conditions to an extent where the effect on improvement of the dough strength and bread quality by the enzymes was not only additive, but the effect was synergistic.
Thus, with respect to improvement of dough strength it was found that with glycerol oxidase alone, the B/C ratio as measured after 45 minutes of resting was increased by 34%, with lipase alone no effect was observed. However, when combining the two enzymes, the B/C ratio was increased by 54%, i.e. combining the glycerol oxidase with the lipase enhanced the dough strengthening effect of glycerol oxidase by more than 50%. Thus, one objective of combining glycerol oxidase and a lipase is to provide an enhancement of the dough strengthening effect of glycerol oxidase by at least 25% such as at least 50% including at least 75%, determined as described herein.
In relation to improvement of finished product, it was found that the combined addition of glycerol oxidase and a lipase resulted in a substantial synergistic effect in respect to crumb homogeneity as defined herein. Also, with respect to the specific volume of baked product a synergistic effect was found. Thus, for a bread product, the addition of lipase alone typically results in a negligible increase of the specific volume, addition of glycerol oxidase alone in an increase of about 25%, whereas a combined addition of the two enzymes results in an increase of more than 30%.
Further in relation to improvement of the finished product, it was found that the addition of lipase resulted in modification of the glycolipids, monogalactosyl diglyceride and digalactosyl diglyceride present in dough. These components were converted to the more polar components monogalactosyl monoglyceride and digalactosyl monoglyceride. As galactosyl monoglycerides are more surface active components than galactosyl diglycerides it is assumed that galactosyl monoglycerides contributed to the observed improved crumb cell structure and homogeneity. Thus, one objective of using lipase is to hydolyse at least 10% of the galactosyl diglycerides normally present in a flour dough to the corresponding galactosyl monoglycerides, such as at least 50% including at least 100%.
The details of such a method using combined addition of glycerol oxidase and lipase are, apart from the use of a lipase in combination with glycerol oxidase, substantially similar to those described above for a method according to the invention which does not require the addition of a lipase.
When using, in accordance with the invention, a lipase in combination with a glycerol oxidase, the amount of lipase is typically in the range of 10 to 100,000 lipase units (LUS) (as defined in the following) per kg flour including the range of 10 to 20,000 LUS, e.g. 100 to 15,000 LUS such as 500 to 10,000 LUS.
Lipases that are useful in the present invention can be derived from a bacterial species, a fungal species, a yeast species, an animal cell and a plant cell. Whereas the enzyme may be provided by cultivating cultures of such source organisms naturally producing lipase, it may be more convenient and cost-effective to produce it by means of genetically modified cells such as it is described in details in the following examples. In the latter case, the term “derived” may imply that a gene coding for the lipase is isolated from a source organism and inserted into a host cell capable of expressing the gene.
Thus, the enzyme may in a useful embodiment be derived from an Aspergillus species including as examples A. tubigensis, A. oryzae and A. niger. 
Presently preferred lipases include the lipase designated Lipase 3, the production and characteristics of which is described in details in the following examples, or a mutant of this enzyme. In the present context, the term “mutant” refers to a lipase having, relative to the wild-type enzyme, an altered amino acid sequence. A further preferred lipase is the lipase found in the commercial product, GRINDAMYLTM EXEL 16.
In a further aspect of the invention there is provided a dough improving composition comprising a glycerol oxidase and at least one further dough ingredient or dough additive.
The further ingredient or additive can be any of the ingredients or additives which are described above. The composition may conveniently be a liquid preparation comprising the glycerol oxidase. However, the composition is conveniently in the form of a dry composition.
The amount of the glycerol oxidase in the composition is in the range of 10 to 10,000 units per kg flour. It will be appreciated that this indication of the amount of enzyme implies that a recommended appropriate amount of the composition will result in the above stated amount in the dough to which it is added. In specific embodiments, the amount of glycerol oxidase is in the range of 10 to 5,000 units such as 10 to 2,500 units per kg of flour. In other useful embodiments, the amount is in the range of 20 to 1,500 units per kg of flour.
In another embodiment, the dough improving composition may further comprises a lipase as defined above and in the amounts as also described above in relation to the method according to the invention.
Optionally, the composition is in the form of a complete dough additive mixture or pre-mixture for making a particular finished product and containing all of the dry ingredients and additives for such a dough. In specific embodiments, the composition is one particularly useful for preparing a baking product or in the making of a noodle product or an alimentary paste product.
In one advantageous embodiment of the above method at least one further enzyme is added to the dough. Suitable examples hereof include a cellulase, a hemicellulase, a xylanase, a starch degrading enzyme, hexose oxidase and a protease.
In a preferred advantageous embodiment, the further added enzyme is a lipase. It has been found that in accordance with the above method, the crumb homogeneity and specific volume of the bakery product can be increased significantly as compared to that of an otherwise similar bakery product prepared from a dough not containing glycerol oxidase, and from a similar bakery product prepared from a dough containing glycerol oxidase.
In a still further aspect, the present invention pertains to the use of a glycerol oxidase and a lipase in combination for improving the rheological properties of a flour dough and the quality of the finished product made from the dough.
In this connection, specific embodiments include use wherein the improvement of the rheological properties of the dough include that the resistance to extension of the dough in terms of the ratio between resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio, as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough that does not contain glycerol oxidase and use wherein the improvement of the quality of the finished product made from the dough is that the average pore diameter of the crumb of the bread made from the dough is reduced by at least 10%, relative to a bread which is made from a bread dough without addition of the lipase.
In a further embodiment, the use according to the invention, implies that the improvement of the quality of the finished product made from the dough consists in that the pore homogeneity of the crumb of the bread made from the dough is increased by at least 5%, relative to a bread which is made from a bread dough without addition of the lipase. The pore homogeneity of bread is conveniently measured by means of an image analyzer composed of a standard CCD-video camera, a video digitiser and a personal computer with WinGrain software. Using such an analyzer, the results of pore diameter in mm and pore homogeneity can be calculated as an average of measurements from 10 slices of bread. The pore homogeneity is expressed in % of pores that are larger than 0.5 times the average of pore diameter and smaller than 2 times the average diameter.
In a further embodiment, the use relates to improvement of the rheological characteristics of the dough including that the gluten index (as defined hereinbelow) in the dough is increased by at least 5%, relative to a dough without addition of a lipase, the gluten index is determined by means of a Glutomatic 2200 apparatus.



BRIEF DESCRIPTION OF THE FIGURES
The present invention is further illustrated by reference to the accompanying figures in which
FIG. 1 shows the restriction map of the genomic clone of the lipA gene,
FIG. 2 shows the structure of the lipA gene encoding lipase 3,
FIG. 3 shows a chromatogram of HIC fractionated culture supernatant of an Aspergillus tubigensis transformant with 62-fold increase of lipase 3, and
FIG. 4 shows a chromatogram of HIC fractionated culture supernatant of the untransformed Aspergillus tubigensis strain.



The invention will now be described by way of illustration in the following non-limiting examples.
A. Production and Purification of Glycerol Oxidase (GLOX)
EXAMPLE 1
Production, Extraction and Purification of Glycerol Oxidase Using Different Strains and Cultivation Conditions
1. Production, Extraction and Purification of Glycerol Oxidase Using Aspergillus japonicus ATCC 1042 Cultivated in a Production Medium Containing 3% Glycerol
The following assay for determination of glycerol oxidase activity was used:
The assay is based on the method described by Sullivan and Ikawa (Biochimica and Biophysica Acta, 1973, 309:11-22), but modified as described in the following. An assay mixture containing 150 μl 2% glycerol (in 100 mM phosphate buffer, pH 7.0), 120 μl 100 mM phosphate buffer, pH 7.0, 10 μl o-dianisidin dihydrochloride (Sigma D 3252, 3 mg/ml in H2O), 10 μl peroxidase (POD) (Sigma P8125, 0.1 mg/ml in 100 mM phosphate buffer, pH 7.0) and 10 μl glycerol oxidase (GLOX) solution. The controls are made by adding buffer in place of GLOX solution. The incubation is started by the addition of glycerol. After 15 minutes of incubation at 25° C. in microtiter plates, the absorbance at 402 nm is read in a Elisa reader. A standard curve is constructed using varying concentrations of H2O2 in place of the enzyme solution. The reaction can be described in the following manner: 




Oxidised o-dianisidine has a yellow colour absorbing at 402 nm.

One glycerol oxidase unit (U) is the amount of enzyme which catalyses the production of 1 μmole H2O2 per minute at 25° C., pH 7.0 at a substrate concentration of 0.2 M glycerol.
A spore suspension of Aspergillus japonicus ATCC 1042 was prepared by incubating A.japonicus on PDA medium (30° C., 7 days) and washing with 10 ml of 0.2% Tween 80. A preculture was prepared by inoculating 1 ml of the resulting spore suspension in 300 ml production medium containing 3.0% of glycerol (87%, Merck), 0.3% of yeast extract (Difco), 0.1% of meat extract (Difco), 0.1% KH2PO4 (Merck), 0.1% of MGSO4*7H2O (Merck), 0.1% antifoam (Contra spum) and 70 mg/l of chloramphenicolum (Mecobenzon) (pH adjusted to 7.2 with NaOH) in a 500 ml flask. The preculture was incubated overnight at 30° C. with shaking (200 rpm).
A 30 liter fermenter with 15 liter production medium was inoculated with 900 ml (corresponding to 3 flasks) of the resulting overnight preculture, and cultured at 30° C. for 25 hours under continuous stirring (350 rpm) and aeration (15 l/min). After culturing, the mycelia was harvested from the resulting culture broth by filtration on a Whatman GF/B filter by suction, and washed with 3 liters of deionized water. The mycelium yield was 186 g (wet weight).
A part (50 g) of the resulting mycelial mat was suspended in 700 ml of 50 mM borate buffer (pH 10.0), and disrupted by ultrasonication (Branson, Sonifer 250) at 5° C. (3×5 minutes). After disruption, the mycelia was removed by centrifugation (29,000 g for 15 minutes), the cell-free extract (700 ml) was brought to 40% saturation with ammonium sulfate and the resulting precipitate was removed by centrifugation (29,000 g for 20 minutes). The ammonium sulfate concentration was then increased to 70% saturation to precipitate the enzyme. The resulting precipitate was collected and solubilized in 100 ml of 50 mM borate buffer (pH 10.0). The crude extract was then dialysed for 24 hours against 5 l of 50 mM borate buffer (pH 10.0). After dialysis the insoluble matters in the crude extract were removed by centrifugation (18,000×g for 10 minutes). The resulting supernatant contained 8.7 units of glycerol oxidase activity per ml.
2. Production, Extraction and Purification of Glycerol Oxidase Using Aspergillus japonicus ATCC 1042 Cultivated in a Production Medium Containing 5% Glycerol
A spore suspension of Aspergillus japonicus ATCC 1042 was prepared as described above. A preculture was prepared by inoculating 1 ml of the resulting spore suspension into a flask (500 ml) containing 200 ml production medium (5.0% glycerol, 0.25% yeast extract, 0.1% Malt extract, 0.7% antifoam (Contra spum), pH adjusted to 6.2 with HCl, sterilization at 121° C. for 90 minutes). The preculture was incubated 3 days at 30° C. with continuous shaking (200 rpm). A 6 liter fermenter with 5 liter production medium as described above was inoculated with 50 ml of the resulting preculture and cultured at 30° C. for 3 days under continuous stirring (250 rpm) and aeration (5 l/min). After culturing the mycelia was harvested from the resulting culture broth by filtration on a Whatman GF/B filter by suction, and washed with 3 liter ionized water containing 0.9% NaCl. The resulting mycelia mat was frozen in liquid nitrogen, suspended in 200 ml of 50 mM phosphate buffer (pH 7.0) and disrupted by ultrasonication (Branson, Sonifer 250) at 5° C. (4 minutes). After disruption, the mycelia was removed by filtration on a Whatman GF/A filter by suction. The enzyme in the resulting filtrate was concentrated on a AMICON® 8400 ultrafiltration unit and contained 87 units of glycerol oxidase per ml after ultrafiltration.
3. Production, Extraction and Purification of Glycerol Oxidase Using Aspergillus japonicus ATCC 1042 Cultivated in a Production Medium Containing 10% Glycerol
A spore suspension of Aspergillus japonicus ATCC 1042 was prepared as described above. A 1 ml sample of the resulting spore suspension was inoculated into each of 5 flasks (500 ml) with 200 ml production medium containing 10.0% of glycerol, 0.1% of yeast extract and 0.1% of malt extract (pH adjusted to 6.2 with HCl, sterilization at 121° C. for 15 minutes). The cultures were incubated for 5 days at 30° C. with shaking (140 rpm).
The extraction and concentration of the enzyme was carried out as described above. The resulting filtrate contained 66 units of glycerol oxidase per ml after ultrafiltration.
4. Production of Glycerol Oxidase from Penicillium funiculosum and Penicillium janthinellum 
Spore suspensions of Penicillium funiculosum NRRL 1132 and Penicillium janthinellum NRRL 2016 were prepared as described above. A 1 ml sample of each of the resulting spore suspensions was inoculated into separate flasks (1000 ml) containing 100 g wheat bran and 100 ml water (two flasks for each culture)
Glycerol oxidase was extracted by suspending the wheat bran cultures in 900 ml of 30 mM phosphate buffer (pH 6.5) containing 0.1% Triton X100 (Merck). The mycelial mat was removed from the cultivation media by filtration using a Whatman GF/B filter. The resulting mycelia mat was frozen in liquid nitrogen, suspended in 200 ml of 50 mM phosphate buffer (pH 7.0) and disrupted by ultrasonication (Branson, Sonifer 250) at 5° C. (4 minutes). After disruption, the mycelia was removed by filtration on a Whatman GF/A filter by suction. The resulting filtrate from the Penicillium funiculosum culture contained 7.4 units of glycerol oxidase per ml, and the resulting filtrate from the Penicillium janthinellum culture contained 11.3 units of glycerol oxidase per ml.
B. Production, Purification and Characterization of Aspergillus tubigensis Lipase 3
Materials and Methods
(i) Determination of Lipase Activity and Protein
1. Plate Assay on Tributyrin-containing Medium
The assay is modified from Kouker and Jaeger (Appl. Environ. Microbiol., 1987, 53:211-213).
A typical protocol for this assay is as follows: 100 ml 2% agar in 50 mM sodium phosphate buffer (pH 6.3) is heated to boiling, and after cooling to about 70° C. under stirring, 5 ml 0.2% Rhodamine B is added under stirring plus 40 ml of tributyrin. The stirring is continued for 2 minutes. The mixture is then sonicated for 1 minute. After an additional 2 minutes of stirring, 20 ml of the agar mixture is poured into individual petri dishes. In the absence of lipase activity, the agar plates containing tributyrin and Rhodamine B will appear opaque and are pink coloured.
To quantify lipase activity, holes having a diameter of 3 mm are punched in the above agar and filled with 10 μl of lipase preparation. The plates are incubated for varying times at 37° C. When lipase activity is present in the applied preparation to be tested, a sharp pink/reddish zone is formed around the holes. When the plates are irradiated with UV light at 350 nm, the lipase activity is observed as halos of orange coloured fluorescence.
2. Modified Food Chemical Codex Assay for Lipase Activity
Lipase activity based on hydrolysis of tributyrin is measured according to Food Chemical Codex, Forth Edition, National Academy Press, 1996, p. 803. With the modification that the pH is 5.5 instead of 7. One LUT (lipase unit tributyrin) is defined as the amount of enzyme which can release 2 μmol butyric acid per min. under the above assay conditions.
3. p-nitrophenyl Acetate Assay
Lipase activity can also be determined colorimetrically using p-nitrophenyl acetate as a substrate e.g. using the following protocol: In a microtiter plate 10 μl of sample or blank is added followed by the addition of 250 μl substrate (0.5 mg p-nitrophenyl acetate per ml 50 mM phosphate buffer, pH 6.0).
The microtiter plate is incubated for 5 minutes at 30° C. and the absorbance at 405 nm is read using a microplate reader. 1 unit is defined as 1 μmol p-nitrophenol released per 5 minutes.
4. p-nitrophenyl Hexanoate Assay
Lipase activity can be determined by using p-nitrophenyl hexanoate as a substrate. This assay is carried out by adding 10 μl of sample preparation or blank to a microtiter plate followed by the addition of 250 μl substrate (0.5 mg p-nitrophenyl hexanoate per ml of 20 mM phosphate buffer, pH 6.). At this concentration of substrate the reaction mixture appears as a milky solution. The microtiter plate is incubated for 5 minutes at 30° C. and the absorbance at 405 nm is read in a microplate reader.
5. Titrimetric Assay of Lipase Activity
Alternatively, lipase activity is determined according to Food Chemical Codex (3rd Ed., 1981, pp 492-493) modified to sunflower oil and pH 5.5 instead of olive oil and pH 6.5. The lipase activity is measured as LUS (lipase units sunflower) where 1 LUS is defined as the quantity of enzyme which can release 1 μmol of fatty acids per minute from sunflower oil under the above assay conditions.
6. Protein Measurement
During the course of purification of lipase as described in the following, the protein eluted from the columns was measured by determining absorbance at 280 nm. The protein in the pooled samples was determined in microtiter plates by a sensitive Bradford method according to Bio-Rad (Bio-Rad Bulletin 1177 EG, 1984). Bovine serum albumin was used as a standard.
EXAMPLE 2
Production, Purification and Characterization of Lipase 3
2.1. Production
A mutant strain of Aspergillus tubigensis was selected and used for the production of wild type lipase. This lipase is referred to herein as lipase 3. The strain was subjected to a fermentation in a 750 1 fermenter containing 410.0 kg of tap water, 10.8 kg soy flour, 11.1 kg ammonium monohydrogenphosphate, 4.0 kg phosphoric acid (75%), 2.7 kg magnesium sulfate, 10.8 kg sunflower oil and 1.7 kg antifoam 1510. The substrate was heat treated at 121° C. for 45 minutes. The culture media was inoculated directly with 7.5×109 spores of the mutant strain. The strain was cultivated for three days at 38° C., pH controlled at 6.5, aeration at 290 l/min and stirring at 180 rpm the first two days and at 360 rpm the last day. The fermentate was separated using a drum filter and the culture filtrate was concentrated 3.8 times by ultra-filtration. The concentrated filtrate was preserved with potassium sorbate (0.1%) and sodium benzoate (0.2%) and used as a starting material for purification of lipase.
2.2. Purification of Lipase
A 60 ml sample of ferment (cf. 2.1) containing 557 LUS/ml, pH 5.5 was first filtered through a GF/B filter and subsequently through a 0.45 μm filter. The filtered sample was desalted using a Superdex G25 SP column (430 ml, 22×5 cm) equilibrated in 20 mM triethanolamine, pH 7.3. The flow rate was 5 ml/min. The total volume after desalting was 150 ml.
The desalted sample was applied to a Source Q30 anion exchanger column (100 ml, 5×5 cm) equilibrated in 20 mM triethanolamine, pH 7.3. The column was washed with equilibration buffer until a stable baseline was obtained.
Lipase activity was eluted with a 420 ml linear gradient from 0 to 0.35 M sodium chloride in equilibration buffer, flow rate 5 ml/min. Fractions of 10 ml were collected. Sodium acetate (100 μl of a 2M solution) was added to each fraction to adjust pH to 5.5. Fractions 26-32 (70 ml) were pooled.
To the pool from the anion exchange step was added ammonium sulfate to 1 M and the sample was applied to a Source Phenyl HIC column (20 ml, 10×2 cm) equilibrated in 20 mM sodium acetate (pH 5.5), 1 M ammonium sulfate. The column was washed with the equilibration buffer. Lipase was eluted with a 320 ml linear gradient from 1 M to 0 M ammonium sulfate in 20 mM sodium acetate (pH 5.5), flow 1.5 ml/min. Fractions of 7.5 ml were collected.
Fractions 33-41 were analyzed by SDS-PAGE using a NOVEX system with precast gels. Both electrophoresis and silver staining of the gels were done according to the manufacturer (Novex, San Diego, USA). (The same system was used for native electrophoresis and isoelectric focusing). It was found that fraction 40 and 41 contained lipase as the only protein.
2.3. Characterization of the Purified Lipase
(i) Determination of Molecular Weight
The apparent molecular weight of the native lipase was 37.7 kDa as measured by the above SDS-PAGE procedure. The purified lipase eluted at a molecular weight of 32.2 kDa from a Superose 12 gel filtration column (50 mM sodium phosphate, 0.2 M sodium chloride, pH 6.85, flow 0.65 ml/min) and is therefore a monomer.
The molecular weight of the lipase was also determined by matrix-assisted laser desorption ionisation (MALDI) by means of a time-of-flight (TOF) mass spectrometer (Voyager Bio-Spectrometry Workstation, Perspective Biosystems). Samples were prepared by mixing 0.7 μl of desalted lipase solution and 0.7 μl of a matrix solution containing sinapic acid (3.5-dimethoxy-4-hydroxy cinnamic acid) in 70% acetonitrile (0.1% TFA, 10 mg/ml). 0.7 μl of the sample mixture was placed on top of a stainless steel probe tip and allowed to air-dry prior to introduction into the mass spectrometer. Spectra were obtained from at least 100 laser shots and averaged to obtain a good signal to noise ratio. The molecular mass for the lipase was found to be 30,384 Da and 30,310 Da by two independent analyses.
Digestion of the lipase with endo-β-N-acetyl-glucosamidase H (10 μl) from Streptomyces (Sigma) was carried out by adding 200 μl lipase and incubating at 37° C. for 2 hours. The digestion mixture was desalted using a VSWP filter and analyzed directly by MALDI mass spectrometry. A major component of deglycosylated lipase gave a mass of 29,339 Da and 29,333 Da by two independent analyses. A minor component with a mass of 29,508 Da was also observed. These values corresponds well to the later calculated theoretical value of 28,939 Da based on the complete amino acid sequence of the mature lipase.
(ii) Determination of the Isoelectric Point
The isoelectric point (pI) for the lipase was determined by isoelectric focusing and was found to be 4.1.
A calculation of the pI based on the amino acid sequence as determined in the following and shown as SEQ ID NO: 9 gave an estimated pI of 4.07.
(iii) Determination of Temperature Stability
Eppendorf tubes with 25 μl of purified lipase 3 plus 50 μl 100 mM sodium acetate buffer (pH 5.0) were incubated for 1 hour in a water bath at respectively 30, 40, 50, and 60° C. A control was treated in the same way, but left at room temperature. After 1 hour the lipase 3 activity was determined by the p-nitrophenyl acetate assay as described above.
The purified lipase had a good thermostability. It was found that the lipase maintained 60% of its activity after 1 hour at 60° C. 80% and 85% activity was maintained after 1 hour at 50° C. and 40° C. respectively.
(iv) Determination of pH Stability
Purified lipase 3 (200 μl) was added to 5 ml of 50 mM buffer solutions: (sodium phosphate, pH 8.0, 7.0 and 6.0 and sodium acetate pH 5.0, 4.0 and 3.5). The control was diluted in 5 ml of 4 mM sodium acetate pH 5.5. After four days at room temperature the residual activity was measured by the Modified Food Chemical Codex assay for lipase activity as described above. The lipase was very stable in the pH range from 4.0 to 7.0 where it maintained about 100% activity relative to the control (Table 2.1). At pH 3.5 the lipase maintained 92% activity, and at pH 8.0 95% residual activity was maintained as compared to the control.







TABLE 2.1







pH stability of lipase 3









pH
Activity (LUT/ml)
Activity (%)












Control (pH 5.5)
89.2
100


3.5
82.5
92


4.0
91.7
103


5.0
86.5
97


6.0
92.4
104


7.0
90.6
102


8.0
84.4
95









EXAMPLE 3
Amino Acid Sequencing of Lipase 3
Purified lipase enzyme was freeze-dried and 100 μg of the freeze-dried material was dissolved in 50 μl of a mixture of 8 M urea and 0.4 M ammonium hydrogencarbonate, pH 8.4. The dissolved protein was denatured and reduced for 15 minutes at 50° C. following overlay with nitrogen and addition of 5 μl 45 mM dithiothreitol. After cooling to room temperature, 5 μl of 100 mM iodoacetamide was added for the cysteine residues to be derivatized for 15 minutes at room temperature in the dark under nitrogen.
135 μl of water and 5 μg of endoproteinase Lys-C in 5 μl of water was added to the above reaction mixture and the digestion was carried out at 37° C. under nitrogen for 24 hours. The resulting peptides were separated by reverse phase HPLC on a VYDAC C18 column (0.46×15 cm; 10 μm; The Separation Group, California, USA) using solvent A: 0.1% TFA in water and solvent B: 0.1% TFA in acetonitrile. Selected peptides were rechromatographed on a Develosil C18 column (0.46×10 cm, Novo Nordisk, Bagsvaerd, Denmark) using the same solvent system, prior to N-terminal sequencing. Sequencing was done using an Applied Biosystems 476A sequencer using pulsed-liquid fast cycles according to the manufacturer's instructions (Applied Biosystems, California, USA).
For direct N-terminal sequencing, the purified protein was passed through a Brownlee C2 Aquapore column (0.46×3 cm, 7 μm, Applied Biosystems, California, USA) using the same solvent system as above. N-terminal sequencing was then performed as described above. As the protein was not derivatized prior to sequencing, cysteine residues could not be determined.
The following peptide sequences were found:









N-terminal:




Ser-Val-Ser-Thr-Ser-Thr-Leu-Asp-Glu-
(SEQ ID NO:1)


Leu-Gln-Leu-Phe-Ala-Gln-Trp-Ser-Ala-


Ala-Ala-Tyr-X-Ser-Asn-Asn


Internal peptide 1:


Val-His-Thr-Gly-Phe-Trp-Lys
(SEQ ID NO:2)


Internal peptide 2:


Ala-Trp-Glu-Ser-Ala-Ala-Asp-Glu-Leu-
(SEQ ID NO:3)


Thr-Ser-Lys-Ile-Lys






No further peptides could be purified from the HPLC fractionation presumably because they were very hydrophobic and therefore tightly bound to the reverse phase column.
A search in SWISS-PROT database release 31 for amino acid sequences with homology to the above peptides was performed and only three sequences were found.
All of the above peptides showed a low homology to the above known sequences. Especially internal peptide 2 has very low homology to the three lipases, LIP-RHIDL, LIP-RHIMI and MDLA-PENCA from Rhizopus delamar (Haas and Berka, Gene, 1991, 109:107-113), Rhizomucor miehei (Boel et al., Lipids, 1988, 23:701-706) and Penicillium camenbertii (Yamaguchi et al., Gene, 1991, 103:61-67; Isobe and Nokihara, Febs. Lett., 1993, 320:101-106) respectively. Although the homology was not very high it was possible to position the lipase 3 peptides on these sequences as it is shown in the below Table 3.1.







TABLE 3.1





Alignment of lipase 3 peptides with known lipase sequences


















LIP_RHIDL
MVSFISISQGVSLCLLVSSMMLGSSAVPVSGKSGSSNTAVSASDNAALPP
50



(SEQ ID


NO: 10)


LIP_RHIMI
MVLKQRANYLGFLIVFFTAFLV--EAVPIKRQSNSTVDS--------LPP
40


(SEQ ID


NO: 11)


MDLA_PENCA
MRLS-----------FFTAL------------------SAVASLGYALPG
21


(SEQ ID


NO: 12)


N-Terminal
SVSTSTLDELQLFAQWSAAAYXSNN (SEQ ID NO: 20)


LIP_RHIDL
LISSRCAPPSNKGSKSDLQAEPYNMQKNTEWYESHGGNLTSIGKRDDNLV
100


LIP_RHIMI
LIPSRTSAPSSSPSTTDPEAPAM----------SRNGPLPS----DVETK
76


MDLA_PENCA
KLQSR------DVSTSELDQFEFWVQYAAASY------------------
47



.**          .*... ..


LIP_RHIDL
GGMTLDLPSDAPPISLSSSTNSASDGGKVVAATTAQIQEFTKYAGIAATA
150


LIP_RHIMI
YGMALNATSYPDSV-----VQAMSIDGGIRAATSQEINELTYYTTLSANS
121


MDLA_PENCA
-------------------------------------YEADYTAQVGDKL
60


LIP_RHIDL
YCRSVVPGNKWDCVQCQKWVPDGKIITTFT-SLLSDTNGYVLRSDKQKTI
199


LIP_RHIMI
YCRTVIPGATWDCIHCDA-TEDLKIIKTWS-TLIYDTNAMVARGDSEKTI
169


MDLA_PENCA
SCSKG------NCPEVEA--TGATVSYDFSDSTITDTAGYIAVDHTNSAV
102


Peptide 1
         VHTGFWK (SEQ ID NO: 2)


Peptide 2
                      AWESAADELTSK (SEQ ID NO: 19)


LIP_RHIDL
YLVFRGTNSFRSAITDIVFNFSDYKPVKGAKVHAGFLSSYEQVVNDYFPV
249


LIP_RHIMI
YIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSYGEVQNELVAT
219


MDLA_PENCA
VLAFRGSYSVRNWVADATFVHTNPGLCDGCLAELGFWSSWKLVRDDIIKE
152



 ..***. * *. ..* .* .  .   . .*  .. ** ...  . ..



Peptide 2    IK


LIP_RHIDL
VQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVG
299


LIP_RHIMI
VLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQG
269


MDLA_PENCA
LKEVVAQNPNYELVVVGHSLGAAVATLAATDL--RGKGYPSAKLYAYA--
198



. .   . *.*.. *.*****.* * * . **  *.   .. .*  ..


LIP_RHIDL
GPRVGNPTFAYYVESTGPFQRTVHKRDIVPHVPPQSFGFLHPGESWIK
349


LIP_RHIMI
QPRVGDPAFANYVVSTGIPYRRTVNERDIVPHLPPAAFGFLHAGEEYWIT
319


MDLA_PENCA
SPRVGNAALAKYITAQGNNF-RFTHTNDPVPKLPLLSMGYVHVSPEYWIT
247



 ****....* *. . *  . * ....* **..*  ..*..* . * **.


LIP_RHIDL
SGTSN-V-----QICTSEIETKDCSNSIVPFTSILD-HLSYF-DINEGSC
391


LIP_RHIMI
DNSPETV-----QVCTSDLETSDCSNSIVPFTSVLD-HLSYF-GINTGLC
362


MDLA_PENCA
SPNNATVSTSDIKVIDGDVSFDGNTGTGLPLLTDFEAHIWYFVQVDAGKG
297


LIP_RHIDL
-------L
392


LIP_RHIMI
-------T
363


MDLA_PENCA
PGLPFKRV
305









EXAMPLE 4
Isolation and Purification of Aspergillus tubigensis Genomic DNA
The Aspergillus tubigensis mutant strain was grown in PDB (Difco) for 72 hours and the mycelium was harvested. 0.5-1 g of mycelium was frozen in liquid nitrogen and ground in a mortar. Following evaporation of the nitrogen, the ground mycelium was mixed with 15 ml of an extraction buffer (100 mM Tris.HCl, pH 8.0, 50 mM EDTA, 500 mM NaCl, 10 mM β-mercaptoethanol) and 1 ml 20% sodium dodecylsulfate. The mixture was vigorously mixed and incubated at 65° C. for 10 min. 5 ml 3M potassium acetate, (pH 5.1 adjusted with glacial acetic acid) was added and the mixture further incubated on ice for 20 min. The cellular debris was removed by centrifugation for 20 min. at 20,000×g and 10 ml isopropanol was added to the supernatant to precipitate (30 min at −20° C.) the extracted DNA. After further centrifugation for 15 min at 20,000×g, the DNA pellet was dissolved in 1 ml TE (10 mM Tris.HCl pH 8.0, 1 mM EDTA) and precipitated again by addition of 0.1 ml 3 M NaAc, pH 4.8 and 2.5 ml ethanol. After centrifugation for 15 min at 20,000×g the DNA pellet was washed with 1 ml 70% ethanol and dried under vacuum. Finally, the DNA was dissolved in 200 μl TE and stored at −20° C.
EXAMPLE 5
The Generation of a Fragment of the Putative Gene Coding for Lipase 3 Using PCR
To obtain a fragment of the putative gene (in the following referred to as the lipA gene) as a tag to isolate the complete gene, a PCR amplification procedure based on the information in the isolated peptide sequences was carried out.









C035:
TTC CAR YTN TTY GCN CAR TGG
(SEQ ID NO:5)








18 mer 256 mixture, based on the
(SEQ ID NO:21)


N-terminal sequence QLFAQW.








C037:
GCV GCH SWY TCC CAV GC
(SEQ ID NO:6) 








17 mer 216 mixture, based on
(SEQ ID NO:22)


internal peptide 2 sequence


AWESAA (reversed).






The oligonucleotides were synthesised on a Applied Biosystems model 392 DNA/RNA Synthesizer. To reduce the degree of degeneracy the rare Ala codon GCA and the Ser codon TCA have been excluded in design of primer C037.
With these primers the desired fragments were amplified by PCR. Using these primers it was expected that a fragment of about 300 bp should be amplified provided there are no introns in the fragment.
The following PCR reactions were set up in 0.5 ml PCR tubes to amplify a putative lipA fragment:
1. 0.5 μg total genomic DNA,

    
    
        100 pmol primer C036,
        100 pmol primer C037,
        10 μl PCR Buffer II (Perkin Elmer),
        6 μl 25 mM MgCl2,
        2 μl dNTP mix (10 mM dATP, 10 mM dCTP, 10 mM dGTP, 10 mM dTT
        2 units Amplitaq polymerase (Perkin Elmer), and
        water to a total volume of 100 μl.
    
    


2. 0.5 μg total genomic DNA,

    
    
        100 pmol primer C035,
        100 pmol primer C036,
        10 μl PCR Buffer II (Perkin Elmer),
        6 μl 25 mM MgCl2,
        2 μl dNTP mix (10 mM dATP, 10 mM dCTP, 10 mM dGTP, 10 mM dTT
        2 units Amplitaq polymerase (Perkin Elmer), and
        water to a total volume of 100 μl.
    
    


The reactions were performed using the following program:
















94° C.
2 min



94° C.
1 min)



40° C.
1 min)



72° C.
1 min) These three steps were repeated for 30



72° C.
5 min cycles



 5° C.
SOAK










The PCR amplifications were performed in a MJ Research Inc. PTC-100 Thermocycler.
In reaction 1, three distinct bands of about 300, 360 and 400 bp, respectively could be detected. These bands were isolated and cloned using the pT7-Blue-T-vector kit (Novagene). The sizes of these fragment is in agreement with the expected size provided that the fragment contains 0, 1 or 2 introns, respectively.
The three fragments were sequenced using a “Thermo Sekvenase fluorescent labelled primer cycle sequencing Kit” (Amersham) and analyzed on a ALF sequencer (Pharmacia) according to the instructions of the manufacturer. The fragment of about 360 bp contained a sequence that was identified as a lipase and, as it contained the part of the N-terminal distal to the sequence used for primer design, it was concluded that the desired lipA gene fragment was obtained.
The sequence of the about 360 bp PCR fragment (SEQ ID NO:7) is shown in the following Table 5.1. The peptide sequence used for primer design is underlined. The remaining part of the N-terminal sequence is doubly underlined.







TABLE 5.1





(SEQ ID NO: 13) PCR-generated putative lipA sequence


(The four amino acid fragments of table 5.1 are


contained in SEQ ID NOS: 14-17)
















        10        20        30        40        50        60



  tacccgggntccattCAGTTGTTCGCGCAATGGTCTGCCGCAGCTTATTGCTCGAATA


                  Q  L  F  A  Q  W  S  A  A  A  Y  C  S  N


        70        80        90       100       110       120


ATATCGACTCGAAAGAVTCCAACTTGACATGCACGGCCAACGCCTGTCCATCAGTCGAGG


  N  I  D  S  K  X  S  N  L  T  C  T  A  N  A  C  P  S  V  E


       130       140       150       160       170       180


AGGCCAGTACCACGATGCTGCTGGAGTTCGACCTGTATGTCACTCAGATCGCAGACATAG


  E  A  S  T  T  M  L  L  E  F  D  L  Y  V  T  Q  I  A  D  I


       190       200       210       220       230       240


AGCACAGCTAATTGAACAGGACGAACGACTTTTGGAGGCACAGCCGGTTTCCTGGCCGCG


  E  H  S  -  L  N  R  T  N  D  F  W  R  H  S  R  F  P  G  R


       250       260       270       280       290       300


GACAACACCAACAAGCGGCTCGTGGTCGCCTTCCGGGGAAGCAGCACGATTGAGAACTGG


  G  Q  H  Q  Q  A  A  R  G  R  L  P  G  K  Q  H  D  -  E  L


       310       320       330


ATTGCTAATCYTGACTTCATCCTGGRAGATAACG


  D  C  -  X  -  L  H  P  X  R  - (SEQ ID NO: 13)









The finding of this sequence permitted full identification of the PCR fragment as part of the lipA gene. The stop codon found in the reading frame can be caused either by a PCR or a reading error or there can be an intron encoded in the fragment as a consensus intron start and ending signal (shown in bold). If the putative intron is removed a shift in reading frame will occur. However, an alignment of the deduced amino acid sequence and the fungal lipases shown in Table 3.1 suggested that the fragment was part of the desired gene.
EXAMPLE 6
Cloning and Characterisation of the lipA Gene
(i) Construction of an Aspergillus tubigensis Genomic Library
Aspergillus tubigensis genomic DNA was digested partially with Tsp5091 (New England Biolabs Inc.). 10 μg DNA was digested in 100 μl reaction mixture containing 2 units Tsp5091. After 5, 10, 15 and 20 minutes 25 μl was removed from the reaction mixture and the digestion was stopped by addition of 1 μl 0.5 M EDTA, pH 8.0. After all four reactions had been stopped, the samples were run on a 1% agarose gel in TAE buffer (10×TAE stock containing per liter: 48.4 g Trizma base, 11.5 ml glacial acetic acid, 20 ml 0.5 M EDTA pH 8.0). HindIII-digested phage Lambda DNA was used as molecular weight marker (DNA molecular weight marker II, Boehringer, Mannheim). Fragments of a size between about 5 and 10 kb were cut out of the gel and the DNA fragments were purified using Gene Clean II Kit (Bio-101 Inc.). The purified fragments were pooled and 100 ng of the pooled fragments were ligated into 1 μg EcoRI-digested and dephosphorylated ZAP II vector (Stratagene) in a total volume of 5 μl. 2 μl of this volume was packed with Gigapack II packing extract (Stratagene) which gave a primary library of 650,000 pfu.
E. coli strain XL1-Blue-MRF (Stratagene) was infected with 5×50,000 pfu of the primary library. The infected bacteria were mixed with top agarose (as NZY plates but with 6 g agarose per liter instead of the agar) and plated on 5 NZY plates (13 cm). After incubation at 37° C. for 7 hours, 10 ml SM buffer (per liter: 5.8 g NaCl, 2.0 g MgCl2.7H2O, 50 ml 1 M Tris.HCl pH 7.5, 5.0 ml of 2% (w/v) gelatine) and incubated overnight at room temperature with gently shaking. The buffer containing washed-out phages was collected and pooled. 5% chloroform was added and after vigorous mixing the mixture was incubated 1 hour at room temperature. After centrifugation for 2 minutes at 10,000×g the upper phase containing the amplified library was collected and dimethylsulphoxide was added to 7%. Aliquots of the library was taken out in small tubes and frozen at −80° C. The frozen library contained 2.7×109 pfu/ml with about 6% without inserts.
(ii) Screening of the Aspergillus tubigensis Library
2×50.000 pfu were plated on large (22×22 cm) NZY plates containing a medium containing per liter: 5 g NaCl, 2 g MgSO4.7H2O, 5 g yeast extract, 10 g casein hydrolysate, 15 g agar, pH adjusted to 7.5 with NaOH. The medium was autoclaved and cooled to about 60° C. and poured into the plates. Per plate was used 240 ml of medium.
The inoculated NZY plates were incubated overnight at 37° C. and plaque lifts of the plates were made. Two lifts were made for each plate on Hybond N (Amersham) filters. The DNA was fixed using UV radiation for 3 min. and the filters were hybridized as described in the following using, as the probe, the above PCR fragment of about 360 bp that was labelled with 32P-dCTP using Ready-to-Go labelling kit (Pharmacia).
The filters were prehybridised for one hour at 65° C. in 25 ml prehybridisation buffer containing 6.25 ml 20×SSC (0.3 M Na3citrate, 3 M NaCl), 1,25 ml 100×Denhard solution, 1.25 ml 10% SDS and 16.25 ml water. 150 μl 10 mg/ml denatured Salmon sperm DNA was added to the prehybridization buffer immediately before use. Following prehybridization, the prehybridisation buffer was discarded and the filters hybridised overnight at 65° C. in 25 ml prehybridisation buffer with the radiolabelled PCR fragment.
Next day the filters were washed according to the following procedure: 2×15 min. with 2×SSC+0.1% SDS, 15 min. with 1×SSC+0.1% SDS and 10 min. with 0.1×SSC+0.1% SDS.
All washes were done at 65° C. The sheets were autoradiographed for 16 hours and positive clones were isolated. A clone was reckoned as positive only if there was a hybridisation signal on both plaque lifts of the plate in question.
Seven putative clones were isolated and four were purified by plating on small petri dishes and performing plaque lifts essentially as described above.
The purified clones were converted to plasmids using an ExAssist Kit (Stratagene).
Two sequencing primers were designed based on the about 360 bp PCR fragment. The sequencing primers were used to sequence the clones and a positive clone with the lipA gene encoding lipase 3 was found. The isolated positive clone was designated pLIP4.
(iii) Characterisation of the pLIP4 Clone
A restriction map of the clone was made. The above 360 bp PCR fragment contained a SacII site and as this site could be found in the genomic clone as well this site facilitated the construction of the map. The restriction map showing the structure of pLIP4 is shown in FIG. 1. The restriction map shows that the complete gene is present in the clone. Additionally, since promoter and terminator sequences are present, it was assumed that all the important regions is present in the clone.
A sample of Escherichia coli strain DH5α containing pLIP4 was deposited in accordance with the Budapest Treaty with The National Collections of Industrial and Marine Bacteria Limited (NCIMB) at 23 St. Machar Drive, Aberdeen, Scotland, United Kingdom, AB2 1RY on Feb. 24, 1997 under the accession number NCIMB 40863.
The gene was sequenced using cycle sequencing and conventional sequencing technology. The complete sequence (SEQ ID NO: 18) is shown below in Table 6.1. The sequence has been determined for both strands for the complete coding region and about 100 bp upstream and downstream of the coding region. The sequences downstream to the coding region have only been determined on one strand and contain a few uncertainties. In the sequence as shown below, the intron sequences are indicated as lowercase letters and the N-terminal and the two internal peptides (peptide 1 and peptide 2) are underlined:







TABLE 6.1





(SEQ ID NO: 18)


The DNA sequence for the lipA gene and flanking sequences

















1
CCNDTTAATCCCCCACCGGGGTTCCCGCTCCCGGATGGAGATGGGGCCAAAACTGGCAAC



61
CCCCAGTTGCGCAACGGAACAACCGCCGACCCGGAACAAAGGATGCGGATGAGGAGATAC


121
GGTGCCTGATTGCATGGCTGGCTTCATCTGCTATCGTGACAGTGCTCTTTGGGTGAATAT


181
TGTTGTCTGACTTACCCCGCTTCTTGCTTTTTCCCCCCTGAGGCCCTGATGGGGAATCGC


241
GGTGGGTAATATGATATGGGTATAAAAGGGAGATCGGAGGTGCAGTTGGATTGAGGCAGT


301
GTGTGTGTGTGCATTGCAGAAGCCCGTTGGTCGCAAGGTTTTGGTCGCCTCGATTGTTTG


361
TATACCGCAAGATGTTCTCTGGACGGTTTGGAGTGCTTTTGACAGCGCTTGCTGCGCTGG



            M  F  S  G  R  F  G  V  L  L  T  A  L  A  A  L


421
GTGCTGCCGCGCCGGCACCGCTTGCTGTGCGGAgtaggtgtgcccgatgtgagatggttg



G  A  A  A  P  A  P  L  A  V  R


481
gatagcactgatgaagggtgaatagGTGTCTCGACTTCCACGTTGGATGAGTTGCAATTG



                        S  V  S  T  S  T  L  D  E  L  Q  L


541
TTCGCGCAATGGTCTGCCGCAGCTTATTGCTCGAATAATATCGACTCGAAAGACTCCAAC



 F  A  Q  W  S  A  A  A  Y  C  S  N  N  I  D  S  K  D  S  N


601
TTGACATGCACGGCCAACGCCTGTCCATCAGTCGAGGAGGCCAGTACCACGATGCTGCTG



GAGTTCGACCTgtatgtcactcagatcgcagacatagagcacagctaatttgaacagGAC



E  F  D  L


721
GAACGACTTTGGAGGCACAGCCGGTTTCCTGGCCGCGGACAACACCAACAAGCGGCTCGT



N  D  F  G  G  T  A  G  F  L  A  A  D  N  T  N  K  R  L  V


781
GGTCGCCTTCCGGGGAAGCAGCACGATTGAGAACTGGATTGCTAATCTTGACTTCATCCT



V  A  F  R  G  S  S  T  I  E  N  W  I  A  N  L  D  F  I  L


841
GGAAGATAACGACGACCTCTGCACCGGCTGCAAGGTCCATACTGGTTTCTGGAAGGCATG



E  D  N  D  D  L  C  T  G  C  K  V  H  T  G  F  W  K  A  W


901
GGAGTCCGCTGCCGACGAACTGACGAGCAAGATCAAGTCTGCGATGAGCACGTATTCGGG



E  S  A  A  D  E  L  T  S  K  I  K  S  A  M  S  T  Y  S  G


961
CTATACCCTATACTTCACCGGGCACAGTTTGGGCGGCGCATTGGCTACGCTGGGAGCGAC



Y  T  L  Y  F  T  G  H  S  L  G  G  A  L  A  T  L  G  A  T


1021
AGTTCTGCGAAATGACGGATATAGCGTTGAGCTGgtgagtccttcacaaaggtgatggag



V  L  R  N  D  G  Y  S  V  E  L


1081
cgacaatcgggaacagacagtcaatagTACACCTATGGATGTCCTCGAATCGGAAACTAT



                            Y  T  Y  G  C  P  R  I  G  N  Y


1141
GCGCTGGCTGAGCATATCACCAGTCAGGGATCTGGGGCCAACTTCCGTGTTACACACTTG



A  L  A  E  H  I  T  S  Q  G  S  G  A  N  F  R  V  T  H  L


1201
AACGACATCGTCCCCCGGGTGCCACCCATGGACTTTGGATTCAGTCAGCCAAGTCCGGAA



N  D  I  V  P  R  V  P  P  M  D  F  G  F  S  Q  P  S  P  E


1261
TACTGGATCACCAGTGGCAATGGAGCCAGTGTCACGGCGTCGGATATCGAAGTCATCGAG



Y  W  I  T  S  G  N  G  A  S  V  T  A  S  D  I  E  V  I  E


1321
GGAATCAATTCAACGGCGGGAAATGCAGGCGAAGCAACGGTGAGCGTTGTGGCTCACTTG



G  I  N  S  T  A  G  N  A  G  E  A  T  V  S  V  V  A  H  L


1381
TGGTACTTTTTTGCGATTTCCGAGTGCCTGCTATAACTAGACCGACTGTCAGATTAGTGG



W  Y  F  F  A  I  S  E  C  L  L  -


1441
ACGGGAGAAGTGTACATAAGTAATTAGTATATAATCAGAGCAACCCAGTGGTGGTGATGG


1501
TGGTGAAAGAAGAAACACATTGAGTTCCCATTACGKAGCAGWTAAAGCACKTKKGGAGGC


1561
GCTGGTTCCTCCACTTGGCAGTTGGCGGCCATCAATCATCTTTCCTCTCCTTACTTTCGT


1621
CCACCACAACTCCCATCCTGCCAGCTGTCGCATCCCCGGGTTGCAACAACTATCGCCTCC


1681
GGGGCCTCCGTGGTTCTCCTATATTATTCCATCCGACGGCCGACGTTTCACCCTCAACCT


1741
GCGCCGCCGCAAAATCTCCCCGAGTCGGTCAACTCCCTCGAACCGCCGCCCGCATCGACC


1801
TCACGACCCCGACCGTCTGYGATYGTCCAACCG









(iv) Analysis of the Sequence of the Complete Gene
The peptide sequences obtained could all be found in the deduced amino acid sequence (see Table 5.1) which confirms again that the sequence found is the sequence of the lipase 3 gene. The gene was designated lipA.
The amino acid sequence was aligned with the three fungal lipases used to align the peptide sequences. The alignment is shown in Table 6.2.







TABLE 6.2





Alignment of the lipase 3 sequence with known fungal lipases


















LIPASE 3
MFSG-----------RFGVLL------------------------TALAA
−15



MDLA_PENCA
MRLS-----------FFTAL-------------------------SAVAS
−14


LIP_RHIDL
MVSFISISQGVSLCLLVSSMMLGSSAVPVSGKSGSSNTAVSASDNAALPP
−50


LIP_RHIMI
MVLKQRANYLGFLIVFFTAFLV--EAVPIKRQSNSTVDS--------LPP
−40


LIPASE 3
L-------------------------------------------------
−16


MDLA_PENCA
L-------------------------------------------------
−15


LIP_RHIDL
LISSRCAPPSNKGSKSDLQAEPYNMQKNTEWYESHGGNLTSIGKRDDNLV
−100


LIP_RHIMI
LIPSRTSAPSSSPSTTDPEAPAM----------SRNGPLPS----DVETK
−76


LIPASE 3
--------GAAAPAPLA-----------VRSVSTSTLDELQLFAQWSAAA
−47


MDLA_PENCA
--------GYALPGKLQ-----------SRDVSTSELDQFEFWVQYAAAS
−46


LIP_RHIDL
GGMTLDLPSDAPPISLSSSTNSASDGGKVVAATTAQIQEFTKYAGIAATA
−150


LIP_RHIMI
YGMALNATSYPDSV-----VQAMSIDGGIRAATSQEINELTYYTTLSANS
−121


LIPASE 3
YCSNNIDSK-DSNLTCTANACPSVEEASTTMLLEFDLTNDFGGTAGFLAA
−96


MDLA_PENCA
YYEADYTAQVGDKLSCSKGNCPEVEATGATVSYDFS-DSTITDTAGYIAV
−95


LIP_RHIDL
YCRSVVP---GNKWDCVQ--CQKWVPDGKIIT---TFTSLLSDTNGYVLR
−192


LIP_RHIMI
YCRTVIP---GATWDCIH--CDA-TEOLKIIK---TWSTLIYDTNAMVAR
−162


LIPASE 3
DNTNKRLVVAFRGSSTIENWIANLDFILEDNDDLCTGCKVHTGFWKAWES
−146


MDLA_PENCA
DHTNSAVVLAFRGSYSVRNWVADATFV-HTNPGLCDGCLAELGFWSSWKL
−144


LIP_RHIDL
SDKQKTIYLVFRGTNSFRSAITDIVFNFSDYKPV-KGAKVHAGFLSSYEQ
−241


LIP_RHIMI
GDSEKTIYIVFRGSSSIRNWIADLTFVPVSYPPV-SGTKVHKGFLDSYGE
−211


LIPASE 3
AADELTSKIKSAMSTYSGYTLYFTGHSLGGALATLGATVL--RNDGY-SV
−193


MDLA_PENCA
VRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDL--RGKGYPSA
−192


LIP_RHIDL
VVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPK
−291


LIP_RHIMI
VQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSS
−261


LIPASE 3
ELYTY--GCPRIGNYALAEHITSQGSGANFRVTHLNDIVPRVPPMDFGFS
− 241


MDLA_PENCA
KLYAY--ASPRVGNAALAKYITAQGN--NFRFTHTNDPVPKLPLLSMGYV
−238


LIP_RHIDL
NLSIFTVGGPRVGNPTFAYYVESTGIPFQ-RTVHKRDIVPHVPPQSFGFL
−340


LIP_RHIMI
NLFLYTQGQPRVGDPAFANYVVSTGIPYR-RTVNERDIVPHLPPAAFGFL
−310


LIPASE 3
QPSPEYWITSGNGASVTASDIEVIEGINSTAGNAGEATVSVV---AHLWY
−288


MDLA_PENCA
HVSPEYWITSPNNATVSTSDIKVIDGDVSFDGNTGTGLPLLTDFEAHIWY
−288


LIP_RHIDL
HPGVESWIKSGTSN-VQICTSEIE------TKDCSNSIVPFTSILDHLSY
−383


LIP_RHIMI
HAGEEYWITDNSPETVQVCTSDLE------TSDCSNSIVPFTSVLDHLSY
−354


LIPASE 3
FFAISECL--------L (SEQ ID NO: 9)
−297


MDLA_PENCA
FVQVDAGKGPGLPFKRV (SEQ ID NO: 12)
−305


LIP_RHIDL
F-DINEGSC-------L (SEQ ID NO: 10)
−392


LIP_RHIMI
F-GINTGLC-------T (SEQ ID NO: 11)
−363



* ...









The above alignment shows that lipase 3 is homologous to the known lipase sequences but that the homology is not very high. Deletions or insertions in the lipase 3 sequence was not observed when comparing the sequence with these three lipases. This strengthens the probability that the putative introns have been identified correctly.
A search in SWISS-PROT release 31 database was performed and it did not lead to further sequences with higher homology than that to the above known lipases (Table 6.3).
The sequence with highest homology is a mono-diacyl lipase from Penicillium camembertii where the identity is found to 42%. However the C-terminal of lipase 3 resembles the 2 lipases from Zygomycetes (Rhizopus and Rhizomucor) and not the P. camembertii enzyme.







TABLE 6.3





Alignment of coding sequence of the lipA gene and gene coding


for mono-diacyl lipase from Penicillium camemberti


















LIPASE 3
MFSGRFGVLLTALAALGAAAPAPLAVRSVSTSTLDELQLFAQWSAAAYCS
−50




|    |  |   | || | |  |  | |||| ||       |  || |


MDLA_PENCA
MRLSFFTAL-SAVASLGYALPGKLQSRDVSTSELDQFEFWVQYAAASYYE
−49


LIPASE 3
NNIDSK-DSNLTCTANACPSVEEASTTMLLEFDLTNDFGGTAGFLAADNT
−99



          | |    || ||    |    |        |||  | | |


MDLA_ PENCA
ADYTAQVGDKLSCSKGNCPEVEATGATVSYDFS-DSTITDTAGYIAVDHT
−98


LIPASE 3
NKRLVVAFRGSSTIENWIANLDFILEDNDDLCTGCKVHTGFWKAWESAAD
−149



|   | |||||    || |   |    |  || ||    |||  |    |


MDLA_PENCA
NSAVVLAFRGSYSVRNWVADATFV-HTNPGLCDGCLAELGFWSSWKLVRD
−147


LIPASE 3
ELTSKIKSAMSTYSGYTLYFTGHSLGGALATLGATVLRNDGY-SVELYTY
−198



      |        | |   ||||| | ||| || ||  || |  || |


MDLA_PENCA
DIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDLRGKGYPSAKLYAY
−197


LIPASE 3
GCPRIGNYALAEHITSQGSGANFRVTHLNDIVPRVPPMDFGFSQPSPEYW
−248



  || || |||  || ||   ||| || ||  |    |     |||||


MDLA_PENCA
ASPRVGNAALAKYITAQGN--NFRFTBTNDPVPKLPLLSMGYVHVSPEYW
−245


LIPASE 3
ITSGNGASVTASDIEVIEGINSTAGNAGEATVSVV---AHLWYFFAISEC
−295



||| | | |  ||| || |  |  || |          || |||


MDLA PENCA
ITSPNNATVSTSDIKVIDGDVSFDGNTGTGLPLLTDFEAHIWYFVQVDAG
−295


LIPASE 3
L--------L (SEQ ID NO: 9)
−297


MDLA_PENCA
KGPGLPFKRV (SEQ ID NO: 12)
−305





Identity: 126 amino acids (42.42%) 






The N-terminal of the mature lipase has been determined by N-terminal sequencing to be the serine residue No. 28 of the lipase 3 precursor (SEQ ID NO:9) as shown in Table 6.4 below. Hence the amino acids No. 1 to No. 27 is the signal sequence.







TABLE 6.4





Amino acid sequence of the precursor of lipase 3


(SEQ ID NO: 9)


















        5        10        15        20        25        30




        |         |         |         |         |         |


1
M F S G R F G V L L T A L A A L G A A A P A P L A V R S V S


31
T S T L D E L Q L F A Q W S A A A Y C S N N I D S K D S N L


61
T C T A N A C P S V E E A S T T M L L E F D L T N D F G G T


91
A G F L A A D N T N K R L V V A F R G S S T I E N W I A N L


121
D F I L E D N D D L C T G C K V H T G F W K A W E S A A D E


151
L T S K I K S A M S T Y S G Y T L Y F T G H S L G G A L A T


181
L G A T V L R N D G Y S V E L Y T Y G C P R I G N Y A L A E


211
H I T S Q G S G A N F R V T H L N D I V P R V P P M D F G F


241
S Q P S P E Y W I T S G N G A S V T A S D I E V I E G I N S


271
T A G N A G E A T V S V V A H L W Y F F A I S E C L L





Number of residues: 297 






Residues 167-176 are recognised as a common motif for the serine lipases (PROSITE). The crystal structure for the Rhizomucor miehei serine lipase has been examined and the residues in the active site identified (Brady et al., Nature, 1990, 343:767-770; Derewanda et al., J. Mol. Biol., 1992, 227:818-839). The active site residues of R. miehei lipase have all been conserved in all the lipases and correspond to the following residues in lipase 3: serine 173, aspartic acid 228 and histidine 285.
Lipase 3 contains 7 cysteine residues. Four of these are conserved in the P. camembertii lipase where they form disulphide bonds (Isobe and Nokuhara, Gene, 1991, 103:61-67). This corresponds to disulphide bonds between residue 62-67 and 131-134. In addition, two cysteine residues are homologous to two C residues which forms an additional disulphide bond in i Rhizopus and Rhizomucor lipases corresponding to residues 49-295.
Two putative N-glycosylation sites were found in lipase 3 in position 59 and 269. Neither of these are conserved in the other fungal lipases.
EXAMPLE 7
Transformation of Aspergillus tubigensis and Overexpression of Lipase 3 in A. tubigensis 
The protocol for transformation was based on the teachings of Buxton et al. (Gene, 1985, 37:207-214), Daboussi et al (Curr. Genet., 1989, 15:453-456) and Punt and van den Hondel, (Meth. Enzym., 1992, 216:447-457).
A multicopy lipA strain was produced by transforming the pLIP4 plasmid into Aspergillus tubigensis strain 6M 179 using cotransformation with a hygromycin resistant marker plasmid.
A screening procedure used to visualise fungal lipase after ultrathin layer isoelectric focusing was adapted to screen Aspergillus tubigensis transformants grown on agar plates. Screening of lipase producers on agar plates was done using 2% olive oil as the substrate for the enzyme (lipase) as well as the inducer for the lipase promoter. In addition, the plates contained a fluorescent dye, Rhodamine B. In the presence of olive oil, the transformants will be induced to secrete lipase. The lipase secreted into the agar plate will hydrolyse the olive oil causing the formation of orange fluorescent colonies that is visible upon UV radiation (350 nm). The appearence of fluorescent colonies was generally monitored after 24 hours of growth. After several days of growth, the lipase producing strains could be identified as orange fluorescent strains that are visible by eye. Under this plate screening condition, the untransformed strain gave no background fluorescence and appeared as opaque pink colonies.
Sixteen transformants that showed orange fluorescent halos were cultivated for 8 days in shake flasks containing 100 ml of minimal medium supplemented with 1% olive oil, 0.5% yeast extract and 0.2% casamino acids. The amount of lipase secreted was quantified by applying 10 μl of cell-free culture supernatant into holes punched in olive oil—Rhodamine B agar plates and incubating the plates overnight at 37° C. Five transformants with higher lipase production were found.
The cell-free culture supernatants from the five transformants were desalted using NAP 5 columns (Pharmacia) and equilibrated in 1M ammonium sulfate (50 mM sodium acetate, pH 5.5). The desalted culture supernatants were fractionated by hydrophobic interaction chromatography (HIC) on a Biogel Phenyl-5 PW column (Biorad). Elution was done by a descending salt gradient of 1M to 0 M ammonium sulfate (20 mM sodium acetate, pH 5.5). A single discrete protein peak was observed after fractionation. The area of the protein peaks were calculated among the different transformants and compared with the untransformed strain. The best transformant showed a 62-fold increase in the amount of lipase after HIC fractionation. A chromatogram of the HIC fractionated culture supernatant of this transformant is shown in FIG. 3 and a similar chromatogram for the untransformed strain is shown in FIG. 4.
The fraction containing the transformed lipase was freeze-dried. The transformed lipase was carboxymethylated and subjected to N-terminal amino acid sequencing of the first 15 amino acids and it was found that the sequence of the recombinant lipase was exactly the same as the native lipase indicating correct signal sequence cleavage.
The different lipase fractions collected after HIC were separated on a 12% Tris-Glycine SDS gel and silver staining revealed one protein band, confirming the homogeneity of the fractions. In addition, the crude extract showed a major lipase band as the only band that accumulated in the culture supernatant in very high amounts when the fungus was cultured in the olive oil-containing medium.
The recombinant lipase was analysed by matrix-assisted laser desorption ionisation (MALDI) by means of a time-of-flight (TOF) mass spectrometer as described hereinbefore. The molecular weight of the recombinant lipase was 32,237 Da.
Detection of N-linked oligosaccharides was achieved by digestion of the lipase with endo-β-N-acetyl-glucosamidase H from Streptomyces (Sigma). Digestion of recombinant lipase secreted into the growth medium altered the mobility of the band seen on SDS-PAGE which moved as a single band with a molecular mass of about 30 kDa.
Deglycosylated recombinant lipase generated by digestion with endoglycosidase and analysed directly by MALDI mass spectrometry gave a molecular weight of the polypeptide backbone of 9,325 Da.
C. Baking Experiments
EXAMPLE 8
Baking Experiments Using Lipase 3
8.1. Baking Procedures and Analytical Methods
(i) Baking Procedure for Danish Toast Bread
Flour (Danish reform flour) 2000 g, dry yeast 30 g, salt 30 g and water corresponding to 400 Brabender units+3%, was kneaded in a Hobart Mixer with hook for 2 min. at low speed and 10 min. at high speed. Dough temperature after kneading was 25° C. Resting time was 10 min. at 30° C. The dough was scaled 750 g per dough and rested again for 5 min at 33° C. and 85% RH. After moulding on a Glimik moulder, the dough were proofed in tins for 50 min at 33° C. and baked in a Wachtel oven for 40 min at 22° C. with steam injection for 16 sec. After cooling, the bread was scaled and the volume of the bread was measured by the rape seed displacement method. The specific volume is calculated by dividing the bread volume (ml) by the weight (g) of the bread.
The crumb was evaluated subjectively using a scale from 1 to 5 where 1=coarsely inhomogeneous and 5=nicely homogeneous.
Three breads baked in tins with lid were stored at 20° C. and used for firmness measurements and pore measurements by means of an Image Analyzer.
(ii) Baking Procedure for Danish Rolls
Flour (Danish reform) 1500 g, compressed yeast 90 g, sugar 24 g, salt 24 g and water corresponding to 400 Brabender units−2% were kneaded in a Hobart mixer with hook for 2 min. at low speed and 9 min at high speed. After kneading, the dough temperature was 26° C. The dough was scaled 1350 g. After resting for 10 min. at 30° C., the dough was moulded on a Fortuna moulder after which the dough was proofed for 45 min. at 34° C. and baked in a Bago oven for 18 min. at 220° C. with steam injection for 12 sec. After cooling, the rolls were scaled and the volume of the rolls was measured by the rape seed displacement method. Specific volume is calculated as described above.
(iii) Determination of Pore Homogeneity
The pore homogeneity of the bread was measured by means of an image analyzer composed of a standard CCD-video camera, a video digitiser and a personal computer with WinGrain software. For every bread, the results of pore diameter in mm and pore homogeneity were calculated as an average of measurements from 10 slices of bread. The pore homogeneity was expressed in % of pores that are larger than 0.5 times the average of pore diameter and smaller than 2 times the average diameter.
(iv) Determination of Firmness
The firmness of bread, expressed as N/dm2, was measured by means of an Instron UTM model 4301 connected to a personal computer. The conditions for measurement of bread firmness were:
















Load Cell
Max. 100 N



Piston diameter
50 mm



Cross head speed
200 mm/min



Compression
25%



Thickness of bread slice
11 mm










The result was an average of measurements on 10 bread slices for every bread.
(v) Determination of Gluten Index
Gluten index was measured by means of a Glutomatic 2200 from Perten Instruments (Sweden). Immediately after proofing, 15 g of dough was scaled and placed in the Glutomatic and washed with 500 ml 2% NaCl solution for 10 min. The washed dough was transferred to a Gluten Index Centrifuge 2015 and the two gluten fractions were scaled and the gluten index calculated according to the following equation:

Gluten index=(weight of gluten remaining on the sieve×100)/total weight of gluten

(vi) Extraction of Lipids from Dough
30 g of fully proofed dough was immediately frozen and freeze-dried. The freeze-dried dough was milled in a coffee mill and passed through a 235 μm screen. 4 g freeze-dried dough was scaled in a 50 ml centrifuge tube with screw lid and 20 ml water saturated n-butanol (WSB) was added. The centrifuge tube was placed in a water bath at a temperature of 100° C. for 10 min. after which the tubes were placed in a Rotamix and turned at 45 rpm for 20 min. at ambient temperature. The tubes were again placed in the water bath for 10 min. and turned on the Rotamix for another 30 min. at ambient temperature.
The tubes were centrifuged at 10,000×g for 5 min. 10 ml of the supernatant was pipetted into a vial and evaporated to dryness under nitrogen cover. This sample was used for HPLC analysis.
A similar sample was fractionated on a Bond Elut Si (Varian 1211-3036). The non-polar fraction was eluted with 10 ml cyclohexan:isopropanol:acetic acid (55:45:1) and evaporated to dryness. This sample was used for GLC analysis.
(vii) HPLC Analysis
Column: LiChrospher 100 DIOL 5 μm (Merck art. 16152) 250×4 mm with a water jacket of a temperature of 50° C.
Mobile phases:
A: heptan:isopropanol:n-butanol:tetrahydrofuran:isooctan:water (64.5:17.5:7:5:5:1)
B: isopropanol:n-butanol:tetrahydrofuran:isooctan:water (73:7:5:5:10)
The mobile phases contained 1 mmol trifluoroacetic acid per 1 mobile phase and were adjusted to pH 6.6 with ammonia.
Pump: Waters 510 equipped with a gradient controller.
Gradient:
















Flow ml/min
Time (min)
A (%)
B (%)





















1.0
0
100
0



1.0
25
0
100



1.0
30
0
100



1.0
35
100
0



1.0
40
100
0










Detector: CUNOW DDL21 (evaporative light-scattering); temperature 100° C.; voltage: 600 volt; air flow: 6.0 l/min.
Injector: Hewlett Packard 1050; injection volume: 50 μl.
The samples for analysis were dissolved in 5 ml chloroform:methanol (75:25), sonicated for 10 min and filtered through a 0.45 μm filter.
(viii) GLC Analysis
Perkin Elmer 8420 Capillary Gas Chromatograph equipped with WCOT fused silica column 12.5 m×0.25 mm coated with 0.1 μm stationary phase of 5% phenyl-methyl-silicone (CP Sil 8 CB from Crompack).
Carrier: Helium
Injection: 1.5 μl with split
Detector: FID 385° C.



















Oven program:
1
2
3
4



Oven temperature, ° C.
80
200
240
360



Isothermal time, min
2
0
0
10



Temperature rate, ° C./min
20
10
12
—










Sample preparation: 50 mg non-polar fraction of wheat lipids was dissolved in 12 ml heptane:pyridine (2:1) containing 2 mg/ml heptadecane as internal standard. 500 μl of the solution was transferred to a crimp vial and 100 μl N-methyl-N-trimethylsilyl-trifluoracetamide was added. The mixture was allowed to react for 15 min at 90° C.
Calculation: Response factors for mono-, di- and triglycerides and free fatty acids were determined from reference mixtures of these components. Based on these response factors, the glycerides and the free fatty acids were calculated in wheat lipids.
8.2. Baking Experiments with Lipase 3 in Danish Toast Bread
The effect of adding lipase 3 to a dough for making Danish toast bread was evaluated. The enzyme was added as a freeze-dried preparation on maltodextrin together with the other ingredients. The results of the baking tests are shown in Tables 8.1 to 8.4.













TABLE 8.1









Lipase
0
5,000  
15,000  
25,000  



LUS/kg



flour



Specific
4.43
   4.43
   4.22
   4.37



volume of



bread



Firmness
35
  33
  32
  30



Day 1



Firmness
90
  90
  85
  73



Day 7





















TABLE 8.2







Lipase
0
5,000  
15,000  
25,000  


LUS/kg flour


Average diameter of
2.96
   2.33
   2.47
   2.65


the crumb pore, mm


Homogeneity of
64.9
   73.8
   66.0
   67.1


crumb pore, %


Porosity, %
85.9
   84.7
   85.5
   85.1


Gluten index, %
42
   45.5
  55
  65




















TABLE 8.3







Lipase
0
5,000  
15,000  
25,000  


LUS/kg flour


Fatty acids, %
0.090
   0.148
    0.218
    0.241


Monoglycerides, %
0.017
   0.031
    0.035
    0.039


Diglycerides, %
0.020
   0.036
    0.040
    0.045


Triglycerides, %
0.790
   0.714
    0.673
    0.622




















TABLE 8.4







Lipase
0
5,000  
15,000  
25,000  


LUS/kg flour


Monogalactosyl
0.073
   0.040
   0.025
   0.018


Diglyceride, %


Digalactosyl
0.244
   0.220
   0.182
   0.127


Diglyceride, %


Digalactosyl
0.008
   0.022
   0.044
   0.054


Monoglyceride, %


Phosphatidyl
0.064
   0.073
   0.055
   0.041


choline, %


Lysophosphatidyl
0.164
   0.182
   0.171
   0.165


choline, %









By the addition of up to about 5,000 LUS/kg flour of the lipase no change in bread volume was observed, but at a higher dosage of lipase 3 there was a tendency to a small but not statistically significant decrease in volume (Table 8.1).
From the results in Table 8.2 it appears that lipase 3 improved the bread crumb homogeneity and that the average diameter of the crumb pores was reduced significantly. The gluten index also clearly correlated to the addition of lipase 3 as an indication of a more firm gluten caused by the modification of the wheat lipid components causing better dough stability and a more homogeneous bread pore structure. However, these modifications appeared to be optimal at the addition of 5,000 LUS/kg flour of lipase 3 whereas a higher dosage resulted in a too strong modification of the wheat gluten.
The results of the GLC and HPLC analyses (Table 8.3) clearly demonstrated that the triglycerides in the dough were hydrolysed. But more interestingly, there was also observed a modification of the glycolipids, monogalactosyl diglyceride and digalactosyl diglyceride. These components were converted to the more polar components monogalactosyl monoglyceride and digalactosyl monoglyceride. As digalactosyl monoglyceride is a more surface active component than digalactosyl diglyceride it is assumed that this component contributed to the observed improved crumb cell structure and homogeneity. It also appeared that phospholipids like phosphatidyl choline were only modified to a very small extent.
8.3. Baking Experiments with Lipase 3 in Danish Rolls
The effect of adding lipase 3 to a dough for making Danish rolls was evaluated. The enzyme was added as a freeze-dried preparation on maltodextrin together with the other ingredients. The results of the baking tests are shown in Tables 8.5 to 8.7.











TABLE 8.5







Lipase 3
0
10,000  
20,000  
30,000  


LUS/kg flour


Specific volume of bread
6.86
   7.04
   6.35
   6.36


(45 min fermentation)


Specific volume of bread
8.30
   8.59
   8.23
   8.04


(65 min fermentation)


Subjective evaluation of
3
 5
 4
 4


crumb homogeneity






















TABLE 8.6







Lipase 3







LUS/kg flour
0
10,000
20,000
30,000









Free fatty acids, %
0.060
0.126
0.173
0.211



Monoglycerides, %
0.028
0.050
0.054
0.063



Diglycerides, %
0.103
0.095
0.110
0.104



Triglycerides, %
0.705
0.561
0.472
0.436























TABLE 8.7







Lipase 3







LUS/kg flour
0
5,000
15,000
25,000









Digalactosyl
0.204
0.187
0.154
0.110



Diglyceride, %



Digalactosyl
0.007
0.026
0.047
0.074



Monoglyceride, %



Phosphatidyl
0.077
0.078
0.077
0.063



choline, %



Lysophosphatidyl
0.153
0.161
0.162
0.150



choline, %










It is apparent from the results shown in Table 8.5 that the addition of lipase 3 does not significantly increase the volume of the rolls. Furthermore, lipase 3 was found to improve the homogeneity of the crumb.
The GLC and HPLC analyses of the wheat lipids, as shown in Tables 8.6 and 8.7, demonstrated the modification of these lipids.
EXAMPLE 9
Dough Improving Effect of Glycerol Oxidase and Lipase
The effect of glycerol oxidase and lipase (separately or in combination) on dough strength was studied in a dough prepared according to the AACC Method 54-10. The dough was subjected to extensiograph measurements (Barbender Extensiograph EXEK/6) also according to AACC Method 54-10 with and with out the addition of glycerol oxidase from Aspergillus japonicus combined with lipase from Aspergillus oryzae (GRINDAMYLTM EXEL 16, Bakery Enzyme, Danisco Ingredients). The dough with out addition of enzymes served as a control.
The principle of the above method is that the dough after forming is subjected to a load-extension test after resting at 30° C. for 45, 90 and 135 minutes, respectively, using an extensigraph capable of recording a load-extension curve (extensigram) which is an indication of the doughs resistance to physical deformation when stretched. From this curve, the resistance to extension, B (height of curve) and the extensibility, C (total length of curve) can be calculated. The B/C ratio (D) is an indication of the baking strength of the flour dough. The results of the experiment are summarized in Table 9.1 below.







TABLE 9.1







Extensigraph measurements of dough supplemented


with glycerol oxidase and lipase












Resting





Sample
time





(per kg flour)
(min)
B-value
C-value
D = B/C





Control
45
220
192
1.15


 500 LUS lipase
45
225
190
1.18


1000 U glycerol oxidase
45
300
195
1.54


 500 LUS lipase +
45
350
198
1.77


1000 U Glycerol oxidase


Control
90
240
196
1.22


 500 LUS lipase
90
245
195
1.16


1000 U Glycerol oxidase
90
330
190
1.74


 500 LUS lipase +
90
380
192
1.98


1000 U Glycerol oxidase


Control
135 
260
188
1.38


 500 LUS lipase
135 
265
190
1.39


1000 U Glycerol oxidase
135 
380
188
2.02


 500 LUS lipase +
135 
410
190
2.15


1000 U Glycerol oxidase









When the results from the above experiments are compared with regard to the differences between the control dough and the glycerol oxidase supplemented dough it appears that glycerol oxidase clearly has a strengthening effect. The B/C ratio was increased by 34%, 43% and 46% after 45, 90 and 135 minutes of resting time respectively.
The addition of lipase only did not have any effect on the B/C ratio.
However, when supplementing the dough with a combination of glycerol oxidase and lipase, a further increase in the B/C ratio was seen as compared to bread prepared from dough supplemented with glycerol oxidase only. The B/C ratio was increased by 54%, 62% and 56% after 45, 90 and 135 minutes respectively. This clearly indicates that the combined use of these two enzymes in the preparation of bread products has an enhancing effect on the baking strength.
EXAMPLE 10
Improvement of the Specific Volume of Bread Prepared from Dough Supplemented with Glycerol Oxidase and Lipase
The effect of using glycerol oxidase and lipase (separately or in combination) on the specific bread volume and the crumb homogeneity was tested in a baking procedure for Danish rolls with a dough prepared as described in example 8. Glycerol oxidase from Aspergillus japonicus and lipase 3 from Aspergillus tubigensis was added to the dough in different amounts. Dough without the addition of enzymes served as control. The fully proofed dough was baked at 220° C. for 18 minutes with 12 seconds steam in a Bago-oven. After cooling the rolls were weighed and the volume of the rolls were measured by the rape seed displacement method. The specific bread volume was determined as the volume of the bread (ml) divided by the weight of the bread (g). The crumb homogeneity was evaluated subjectively on a scale from 1 to 7, where 1=course inhomogeneous and 7=nice homogeneous. The results from this experiment are summarized in Table 10.1 below.







TABLE 10.1







Specific volume and crumb homogeneity in bread


supplemented with lipase and glycerol











Sample
Specific
Crumb homo-



(per kg flour)
volume (ml/g)
geneity







Control
5.45
1



 1,000 U glycerol oxidase
6.75
2



10,000 LUS lipase
5.65
4



10,000 LUS lipase +
7.25
7



1,000 U glycerol oxidase










As can be seen in the above Table 10.1, the use of glycerol oxidase in the preparing of bread, significantly increased the bread volume (24%) as compared to bread prepared from a similar dough not supplemented with this enzyme. Addition of glycerol oxidase did not improve the crumb homogeneity significantly.
The use of lipase in the preparing of bread did not increase the specific volume of the bread, however a highly increased pore homogeneity was observed.
The combined use of glycerol oxidase and lipase increased the specific volume of the bread with 33% as compared to bread prepared from a similar dough not supplemented with any of the two enzymes.
In addition, the crumb homogeneity was highly improved by the combined use of lipase and glycerol oxidase as compared to the control bread and the breads prepared from dough supplemented with lipase and glycerol oxidase respectively.
This clearly indicates that the combination of lipase and glycerol oxidase in the preparation of bread has a synergistic effect and significantly enhances the shape and appearance of the finished bread product.
EXAMPLE 11
Hydrolysis of Triglycerides and Formation of Glycerol in Dough Supplemented with Lipase
In order to study the hydrolysis of triglycerides and the formation of glycerol in a proofed dough supplemented with lipase, a dough for Danish rolls was prepared in the same manner as described in example 8. Different amounts of lipase (GRINDAMYLTM EXEL 16) was added to the dough, and the total lipid from the fully proofed dough was extracted and analyzed by gas chromatography as described above.







TABLE 11.1







Triglycerides and glycerol in a dough as a func-


tion of lipase addition









Lipase addition




(GRINDAMYL TM EXEL
Glycerol
Triglycerides


16) (LUS per kg flour)
(%)
(%)





   0
2.2
7.88


  500
2.2
6.22


1,250
2.4
5.99


2,500
2.8
5.37


3,750
2.9
5.47


5,000
3.0
5.55


7,500
3.1
5.03


10,000 
3.0
4.39









From the above experiment it is clear that the addition of lipase to a dough has a hydrolyzing effect on the triglycerides present in the dough, which is seen as a decrease in the triglyceride content as function of the increased lipase addition. The resulting level of glycerol increases as a function of the lipase addition. These results suggests, that the improvement of the B/C ratio and the specific bread volume in bread prepared from dough supplemented with both glycerol oxidase and lipase, as was seen in example 9 and 10, could be due to that lipase addition to a dough is generating glycerol which further can act as substrate for glycerol oxidase.
SUMMARY PARAGRAPHS
The present invention is defined in the claims and the accompanying description.
For convenience other aspects of the present invention are presented herein by way of numbered paragraphs.
1. A method of improving the rheological properties of a flour dough and the quality of the finished product made from the dough, comprising adding to the dough 10 to 10,000 units of a glycerol oxidase per kg of flour.
2. A method according to paragraph 1 wherein the glycerol oxidase is derived from an organism selected from the group consisting of a bacterial species, a fungal species, a yeast species, an animal cell and a plant cell.
3. A method according to paragraph 2 wherein the fungal species is selected from the group consisting of an Aspergillus species, a Neurospora species and a Penicillium species.
4. A method according to paragraph 1 wherein the resistance to extension of the dough in terms of the ratio between resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio, as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough not containing glycerol oxidase.
5. A method according to paragraph 1 wherein the finished product is selected from the group consisting of a bread product, a noodle product and an alimentary paste product.
6. A method according to paragraph 1 where at least one further enzyme is added to the dough ingredients, dough additives or the dough.
7. A method according to paragraph 6 wherein the further enzyme is selected from the group consisting of a cellulase, a hemicellulase, a starch degrading enzyme, an oxidoreductase, a lipase and a protease.
8. A method of improving the rheological properties of a flour dough and the quality of the finished product made from the dough, comprising adding to the dough a glycerol oxidase and a lipase.
9. A method according to paragraph 8 wherein the amount of glycerol oxidase is in the range of 10 to 10,000 units per kg flour.
10. A method according to paragraph 8 wherein the glycerol oxidase is derived from an organism selected from the group consisting of a bacterial species, a fungal species, a yeast species, an animal cell and a plant cell.
11. A method according to paragraph 10 wherein the fungal species is selected from the group consisting of an Aspergillus species, a Neurospora species and a Penicillium species.
12. A method according to paragraph 8 wherein the resistance to extension of the dough in terms of the ratio between resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio, as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough not containing glycerol oxidase.
13. A method according to paragraph 8 wherein the finished product is selected from the group consisting of a bread product, a noodle product and an alimentary paste product.
14. A method according to paragraph 8 where at least one further enzyme is added to the dough ingredients, dough additives or the dough.
15. A method according to paragraph 14 wherein the further enzyme is selected from the group consisting of a cellulase, a hemicellulase, a starch degrading enzyme, an oxidoreductase, and a protease.
16. A method according to paragraph 8 wherein the amount of lipase is in the range of 10 to 100,000 LUS per kg of flour.
17. A method according to paragraph 8 wherein the lipase is derived from an organism selected from the group consisting of a bacterial species, a fungal species, a yeast species, an animal cell and a plant cell.
18. A method according to paragraph 17 wherein the lipase is derived from an Aspergillus species.
19. A method according to paragraph 18 wherein the Aspergillus species is selected from the group consisting of A. tubigensis, A. oryzae and A. niger. 
20. A method according to paragraph 8 wherein at least 10% of the galactosyl diglycerides normally present in a flour dough is hydrolysed to the corresponding galactosyl monoglycerides.
21. A dough improving composition comprising a glycerol oxidase and at least one further dough ingredient or dough additive.
22. A composition according to paragraph 21 wherein the further dough additive is selected from the group consisting of a substrate for glycerol oxidase and a lipase.
23. A composition according to paragraph 22 which is a premixture useful for preparing a baked product or in making a noodle product or an alimentary paste product.
24. A composition according to paragraph 21 which comprises an additive selected from the group consisting of an emulsifying agent and a hydrocolloid.
25. A composition according to paragraph 24 wherein the hydrocolloid is selected from the group consisting of an alginate, a carrageenan, a pectin and a vegetable gum.
26. A composition according to paragraph 21 wherein the amount of glycerol oxidase is in the range of 10 to 10,000 units per kg flour.
27. A composition according to paragraph 21 or 26, comprising as the further dough additive a lipase in an amount which is in the range of 10 to 100,000 LUS per kg flour.
28. Use of a glycerol oxidase for improving the rheological properties of a flour dough and the quality of the finished product made from the dough.
29. Use according to paragraph 28 wherein the improvement of the rheological properties include that the resistance to extension of the dough in terms of the ratio between resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio, as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough not containing glycerol oxidase.
30. Use of a glycerol oxidase and a lipase in combination for improving the rheological properties of a flour dough and the quality of the finished product made from the dough.
31. Use according to paragraph 30 wherein the improvement of the rheological properties of the dough include that the resistance to extension of the dough in terms of the ratio between resistance to extension (height of curve, B) and the extensibility (length of curve, C), i.e. the B/C ratio, as measured by the AACC method 54-10 is increased by at least 10% relative to that of an otherwise similar dough that does not contain glycerol oxidase.
32. Use according to paragraph 30 wherein the improvement of the quality of the finished product made from the dough is that the average pore diameter of the crumb of the bread made from the dough is reduced by at least 10%, relative to a bread which is made from a bread dough without addition of the lipase.
33. Use according to paragraph 30 wherein the improvement of the quality of the finished product made from the dough is that the pore homogeneity of the crumb of the bread made from the dough is increased by at least 5%, relative to a bread which is made from a bread dough without addition of the lipase.
34. Use according to paragraph 30 or 31 wherein the improvement of the rheological characteristics of the dough includes that the gluten index in the dough is increased by at least 5%, relative to a dough without addition of a lipase, the gluten index is determined by means of a Glutomatic 2200 apparatus.

## Claims

1. A method of preparing a baked product having improved pore homogeneity and reduced average pore diameter, relative to a baked product without addition of a polypeptide, the method comprising adding a polypeptide having lipase activity; wherein said polypeptide is a triacylglycerol hydrolyzing enzyme; and wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides.

2. A method according to claim 1, comprising adding to the dough the polypeptide in an amount that results in a reduction of the average pore diameter in the crumb of the bread made from the dough by at least 10%, relative to a bread which is made from a bread dough without addition of the polypeptide.

3. A method according to claim 1, comprising adding to the dough the polypeptide in an amount that results in an increase of the pore homogeneity in the crumb of the bread made from the dough by at least 5%, relative to a bread which is made from a bread dough without addition of the polypeptide.

4. A method according to claim 1, comprising adding to the dough the polypeptide in an amount that results in an increase of the gluten index in the dough of at least 5%, relative to a dough without addition of the polypeptide, the gluten index being determined by means of a Glutomatic 2200 apparatus.

5. A method according to claim 1 wherein the polypeptide is added to the dough in an amount which is in the range of 5,000-30,000 lipase units (LUS) per kg flour.

6. A method according to claim 1, wherein an emulsifier is added to the dough.

7. A method of improving the stability of a gluten network in a dough, imparting improved pore homogeneity, reducing pore diameter of a baked product made from the dough or a combination thereof, relative to a dough without addition of a polypeptide, comprising adding to the dough:
a polypeptide wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides; or, 
a polypeptide prepared by transforming a host cell with a recombinant DNA molecule comprising a nucleotide sequence coding for a polypeptide wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides, the host cell being capable of expressing the nucleotide sequence coding for the polypeptide, cultivating the transformed host cell under conditions where the nucleotide sequence is expressed and harvesting the polypeptide.

8. A method according to claim 7, wherein the gluten index in the dough is increased by at least 5%, relative to a dough which is made without addition of the polypeptide wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides; or, wherein the polypeptide is prepared by transforming a host cell with a recombinant DNA molecule comprising a nucleotide sequence coding for a polypeptide wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolizing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides, the host cell being capable of expressing the nucleotide sequence coding for the polypeptide, cultivating the transformed host cell under conditions where the nucleotide sequence is expressed and harvesting the polypeptide, the gluten index being determined by means of a Glutomatic 2200 apparatus.

9. A dough improving composition comprising a polypeptide wherein said polypeptide is capable of hydrolyzing glycolipids that are present in a flour to the corresponding galactosyl monoglycerides, wherein said polypeptide is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides, and at least one further conventional dough additive component.

10. A method of preparing a dough comprising adding to dough ingredients an enzyme that hydrolyzes compounds including a triglyceride, a glycolipid, and a phospholipid, wherein said enzyme is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides.

11. A method for preparing bread comprising preparing a dough comprising adding to dough ingredients an enzyme that hydrolyzes compounds including a triglyceride, a glycolipid, and a phospholipid; wherein said enzyme is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides; and baking the dough.

12. A dough prepared according to the method of claim 10.

13. In a dough wherein the improvement comprises the dough including an enzyme that hydrolyzes compounds including a triglyceride, a glycolipid, and a phospholipid, wherein said enzyme is capable of hydrolyzing at least 10% of galactosyl diglycerides present in a flour dough to monoglycerides.

14. A dough improving composition according to claim 9, wherein the further dough additive component is an emulsifying agent.

15. A dough improving composition according to claim 14, wherein the emulsifying agent is selected from the group consisting of monoglycerides, diacetyl tartaric acid esters of mono- and diglycerides of fatty acids, and lecithins.

16. The method of claim 6, wherein the emulsifier is selected from the group consisting of monoglycerides, diacetyl tartaric acid esters of mono- and diglycerides of fatty acids, and lecithins.

17. The method of claim 7, wherein an emulsifying agent is further added to the dough.

18. The method of claim 17, wherein the emulsifying agent is selected from the group consisting of monoglycerides, diacetyl tartaric acid esters of mono- and diglycerides of fatty acids, and lecithins.

19. The method of claim 8, wherein an emulsifying agent is further added to the dough.

20. The method of claim 19, wherein the emulsifying agent is selected from the group consisting of monoglycerides, diacetyl tartaric acid esters of mono- and diglycerides of fatty acids, and lecithins.