# Patent

## Title
Polynucleotides encoding lamprey GnRH-III

## Abstract

Novel isolated cDNA encoding the precursor of the novel gonadotropin-releasing hormones in four species of the fish lamprey is disclosed. The use of such cDNA's in studying the phylogenetic relationship of various species of fish and vertebrates overall; and the use of such cDNA's for controlling the gonadal development and spawning of fish, including inducing and inhibiting maturation, spawning and reproduction, is also described. Methods by which the novel peptides may be administered to fish to control their reproduction are also described.

## Background
GOVERNMENT SPONSORSHIP
This Invention is funded in part by NICHD grant No. R03 HD39166-02; NSF IBN0090852; and NSF INT-981528.


COPYRIGHT
A portion of the disclosure of this patent document contains material which is subject to copyright protection. The copyright owner has no objection to the facsimile reproduction by anyone of the patent document or the patent disclosure as it appears in the United States patent and Trademark Office patent file or records, but otherwise reserves all copyright rights whatsoever.
FIELD OF THE INVENTION
This invention relates to novel peptide hormones which influence the release of gonadotropins by the pituitary gland in fish. More particularly the invention relates to novel forms of GnRH in Lamprey. Most particularly the invention relates to isolated cDNA encoding the precursor of a novel form of gonadotropin-releasing hormone in lamprey. In addition, the present invention is directed to the administration and use of such cDNA, and the peptides encoded thereby, in controlling the gonadal development and spawning of fish.
BACKGROUND OF THE INVENTION
GnRH
In vertebrates, the hypothalamus and pituitary have well-defined roles in the control of reproduction. GnRH (gonadotropin-releasing hormone) is the central regulatory neurohormone controlling reproduction in all vertebrates. GnRH is a ten amino-acid peptide, synthesized in the hypothalamus and released into the hypophysial portal blood system, directly into the pituitary gland as in the case of teleost fish, or by diffusion as in the case of agnathans. Upon response to external cues (for example as environmental cues such as water temperature) and internal cues GnRH is released and acts at the pituitary gland to stimulate the synthesis and release of the gonadotropins, which in turn travel by systemic circulation to the gonads, thereby regulating steroidogenesis and gametogenesis.
GnRH has been the subject of intense research over many years because of its dual significance for understanding reproductive biology and for developing medical therapies. Aside from its importance in research for understanding reproductive biology, GnRH has many medical and other practical applications including reproductive enhancement and/or contraception in animals and fishes. In fact, GnRH and its analogs are already being used in commercial fish farming to stimulate and regulate sexual maturation and reproduction.
Over the past 15 years or so, a considerable amount of research has been devoted to the effects of GnRH and its analogs on reproduction in fish. Many of the economically important fish do not reproduce spontaneously in captivity. Thus manipulation of their reproductive cycles is crucial to marine aquaculture. Almost all of the research to date has been focused on GnRH-based spawning induction therapy in a number of commercially important species (Zohar et al., 1989). Brood females of salmon and other valuable species will spawn in captivity, but have difficulties in their spawning and the timing of spawning. By implanting a GnRH agonist into a brood female, a fish farmer can ensure that the female will ripen at the proper time, thus preventing potentially costly guesswork. However, while there has been considerable success in achieving high yields in rearing fish, there has been only limited success in the manipulation of the reproductive cycles and spawning of the reared fish. In addition, most of the work to date has focused on or examined the ability of GnRH agonists to induce spawning in females. Few researchers have examined the ability of GnRH antagonists to sterilize male fish, due to its lack of commercial application in aquaculture. However, a new method of sterilization would be very useful in the field of sea lamprey control in the Great Lakes.
During the past few years, the Great Lakes Fisheries Commission (GLFC) has been searching for alternative methods to control sea lamprey populations. In its 1992 Strategic Plan, the GLFC stated that one of its major objectives was to suppress sea lamprey populations to target levels by reduction of the use of lampricides and by development of new control methods by 2010. A compound called Bisazir is currently being used in a sterile-male release program. This compound is extremely hazardous to humans, however, and required a special facility to be constructed at Hammond Bay Biological Station, MI in 1991 for its use. Other chemosterilants that are non-hazardous need to be developed. Although some have suggested inhibiting gonadal development by the negative regulation of GnRH, there have not been any viable methods developed. U.S. Pat. No. 6,210,927 to Zohar, which is incorporated herein in its entirety, for brief mention of inhibition of gonadal development in fish and examples of some uses and applications for seabream GnRH.
Thus, it would be desirable to have a method of sterilizing male sea lampreys, and other fish or animals, using a lamprey or other appropriate species GnRH antagonist.
There are also many potential therapeutic human reproductive applications for GnRH. Since 1971 when the primary structure of mammalian GnRH was determined, over 7,000 analogs to GnRH have been made and tested in hundreds of studies in mammals. So far, the most active synthetic agonists are found to be those with D-amino acid substitution in position 6 of the GnRH decapeptide. The most effective GnRH antagonists to date are those that have substitutions in position 6 as well as substitution of amino acids in positions 1, 2, and 3.
As a result of these studies several mammalian GnRH analogs have been shown to be highly successful and are currently being used for sterilization, conception and other therapeutic and clinical applications. In fact, the clinical application of GnRH analogs as therapeutic drugs generates over 2 billion dollars per year in sales. Hence there is considerable interest in the function of each residue in the GnRH so that analogs can be designed with maximum efficiency as agonists or antagonists to the GnRH receptor, for use as drugs. Furthermore, the responses to GnRH and analogs are different in males compared to females, suggesting that different neuroendocrine mechanisms may be involved.
To date, many analogs have proven useful, but produce undesirable side effects, such as affecting more than just the target. For example, Lupron Depot® which is a GnRH analog and is now one of the leading chemical treatments for advanced prostate cancer and endometriosis in humans has undesirable side effects. For example, continuous treatment of Lupron Depot® results in decreased levels of luteinizing hormone (LH) and follicle stimulating hormone (FSH). In males, testosterone is reduced to castrate levels. In pre-menopausal females, estrogens are reduced to post-menopausal levels.
Thus, there is still critical information that is needed for understanding the biological activity of these analogs. The potential wider use of GnRH antagonists in humans awaits the availability of potent analogs that do not have the side effects (including high histamine releasing activity) seen with currently-used analogs.
LAMPREY
GnRH has also been studied in several species in the process of researching the evolution of reproductive biology, one of which species is the lamprey. Lampreys and hagfish of the Class Agnatha are of particular importance in understanding endocrinological relationships since they are the modern descendants of the most primitive vertebrates available for study. They represent the oldest lineages of extant vertebrates—which evolved over 550 million years ago. Therefore, the study of lampreys and the characterization of brain and pituitary hormones in lampreys is particularly important for understanding the molecular evolution and functional diversity of reproductive hormones, and can potentially yield valuable insight into human reproductive processes. As noted above, GnRH is the central regulatory neurohormone controlling reproduction in all vertebrates. However, until about 15 years ago, there was little evidence for neuroendocrine control of reproduction in lampreys.
There are approximately 40 species of lampreys that are classified as parasitic or non-parasitic. Lampreys spawn only once in their lifetimes, after which they die. All larval lampreys, called ammocoetes, live in fresh water as borrowing organisms in the bottoms of streams or lakes. In the parasitic sea lamprey, sexual maturation is a seasonal, synchronized process. The sea lampreys begin their lives as fresh water ammocoetes, which are blind, filter feeding larvae. After approximately 5-7 years in freshwater streams, metamorphosis occurs and the ammocoetes become free-swimming, sexually immature lampreys, which migrate to the sea or lakes. During the approximately 15 month-long parasitic sea phase, gametogenesis progresses. After approximately 15 months at sea, lampreys return to freshwater streams and undergo the final maturational processes resulting in mature eggs and sperm, and finally spawning.
As stated above, however, until about 15 years ago, there was a question as to whether there was brain control of reproduction in lampreys. The question of whether there is hypothalamic control over reproduction in lampreys has special significance, because lampreys are modern descendants of the one of the oldest lineages of extant vertebrates and are among the most primitive vertebrates available for study. Thus, the study of lamprey reproduction can shed light on the overall evolution of vertebrate reproduction.
Currently thirteen structures of GnRH have been determined in various vertebrate species and two in invertebrates. They have traditionally been named for the species from which they were first isolated. Table 1 summarizes the various known forms of the GnRH decapeptide. Also, the history of discovery, isolation and characterization of the various known forms of cDNA sequences encoding GnRH precursors is summarized in Table 2 which lists the characterized cDNA's of GnRH precursors.







TABLE 1







The 15 known GnRH isoforms, grouped together based on the


regions of similarity, with differences from mammalian


mGnRH underlined.


Table 1-The 15 known GnRH isoforms, grouped together based on the regions of similarity.

















GnRH
1
2
3
4
5
6
7
8
9
10





Vertebrate












Mammal
pGlu
His
Trp
Ser
Tyr
Gly
Leu
Arg
Pro
Gly-NH2


Guinea Pig
pGlu
Tyr
Trp
Ser
Tyr
Gly
Val
Arg
Pro
Gly-NH2


Chicken - I
pGlu
His
Trp
Ser
Tyr
Gly
Leu
Gln
Pro
Gly-NH2


Rana
pGlu
His
Trp
Ser
Tyr
Gly
Leu
Trp
Pro
Gly-NH2


Seabream
pGlu
His
Trp
Ser
Tyr
Gly
Leu
Ser
Pro
Gly-NH2


Salmon
pGlu
His
Trp
Ser
Tyr
Gly
Trp
Leu
Pro
Gly-NH2


Medaka
pGlu
His
Trp
Ser
Phe
Gly
Leu
Ser
Pro
Gly-NH2


Catfish
pGlu
His
Trp
Ser
His
Gly
Leu
Asn
Pro
Gly-NH2


Herring
pGlu
His
Trp
Ser
His
Gly
Leu
Ser
Pro
Gly-NH2


Chicken - II
pGlu
His
Trp
Ser
His
Gly
Trp
Tyr
Pro
Gly-NH2


Dogfish
pGlu
His
Trp
Ser
His
Gly
Trp
Leu
Pro
GIy-NH2


Lamprey - III
pGlu
His
Trp
Ser
His
Asp
Trp
Lys
Pro
Gly-NH2


Lamprey - I
pGlu
His
Tyr
Ser
Leu
Glu
Trp
Lys
Pro
Gly-NH2


Invertebrate












Tunicate - I
pGlu
His
Trp
Ser
Asp
Tyr
Phe
Lys
Pro
Gly-NH2


Tunicate - II
pGlu
His
Trp
Ser
Leu
Cys
His
Ala
Pro
Gly-NH2









The 15 primary structures of GnRH where originally sequenced in pig, mGnRH (Matsuo et al., 1971; Burgus et al., 1972), guinea pig, gpGnRH (Jimenez-Linan et al., 1997), chicken, two forms, chGnRH-I and chGnRH-II (King and Millar, 1982a; King and Millar, 1982b; Miyamoto et al., 1983; Miyamoto et al., 1984), salmon, sGnRH (Sherwood et al. 1983), lamprey, two forms, lGnRH-I and lGnRH-III (Sherwood et al., 1986; Sower et al., 1993), catfish, cfGnRH (Ngamvongchon et al., 1992), dogfish, dGnRH (Lovejoy et al., 1992), herring, hGnRH (Carolsfeld et al., 2000), seabream, sbGnRH (Powell et al., 1994), rana, rGnRH (Yoo et al., 2000), medaka, mdGnRH (Okubo et al., 2000), and tunicate (a protochordate), two forms, tGnRH-I and tGnRH-II (Powell et al., 1996).







TABLE 2







The history of discovery, isolation and characterization of the various known


forms of cDNA sequences encoding GnRH precursors.


GnRH cDNAs and Genes










Isoform
Organism
Year
Reference





Mammalian
Human
1984
Seeburg et al, Nature



Norway Rat
1986
Adelman et al, PNAS



Mouse
1986
Mason et al, Science



Norway Rat
1989
Bond et al, Mol Endocrinol



African Clawed Frog
1994
Hayes et al, Endo



Tree Shrew
1995
White et al Soc Neurosci



Haplochromis burtoni
1998
White et al, Gen Comp Endo



Japanese Eel
1999
Okubo et al, Zool Sci



Bullfrog
2001
Wang et al, J Exp Zool


Salmon
Goldfish
1991
Bond et al , Mol Endo



Atlantic Salmon
1992
Klungland et al, Mol Cell Endo



Rainbow Trout
1992
Alestrom et al, Mol Marine Biol Biotechnol



Cherry Salmon
1992
Suzukiet et al, J Mol Endo



Brook Trout
1992
Klungland et al, Mol Cell Endo



Chinook Salmon
1992
Klungland et al, Mol Cell Endo



Rainbow Trout
1992
Klungland et al, Mol Cell Endo



Brown Trout
1992
Klungland et al, Mol Cell Endo



Plainfin Midshipman
1995
Grober et al, Gen Comp Endo



Sockeye Salmon
1995
Coe et al, Mol Cell Endo



Medaka
2000
Okubu et al, Biochem Biophys Res Commun



Australian Bonytongue
2001
Okubu and Aida, Gen Comp Endo



European Sea Bass

Zmora et al (unpublished)



Zebrafish

Torgersen et al, (unpublished)



Verasper moseri

Amano (unpublished)


Lamprey III
Sea Lamprey
2002
Silver et al, Am Zool



Pacific Sea Lamprey
2002
Silver et al, Am Zool



Australian Lamprey
2002
Silver et al, Am Zool



Pouched Lamprey
2002
Silver et al, Am Zool


Lamprey I
Sea Lamprey
2001
Suzuki et al, J Mol Endo


Guinea Pig
Guinea Pig
1997
Jimenez-Linan et al,Endo


Chicken I
Chicken
1993
Dunn et al, J Mol Endo


Rana
Frog
2000
Yoo et al Mol Cell Endo


Medaka
Medaka
2000
Okubu et al, Biochem Brophys Res Commun


Catfish
African Catfish
1994
Bogerd et al, Eur J Biochem


Chicken II
Goldfish
1994
Bogerd et al, Eur J Biochem



Haplochromis burtoni
1994
White et al, PNAS



Tree Shrew
1995
White et al, Soc Neurosci



Rhesus Monkey
1996
Dong et al, Mol Cell Endo



Human
1998
White et al, PNAS



Striped Sea-Bass
1998
Chow et al, J Mol Endo



Rhesus Monkey
1998
White et al, Soc Neurosci



Haplochromis burtoni
1998
White et al, Gen Comp Endo



Human
1998
White et al, PNAS



Japanese Eel
1999
Okubo et al, Zool Sci



Medaka
2000
Okubu et al, Biochem Brophys Res Commun



Australian Bonytongue
2001
Okubo and Aida, Gen Comp Endo



Bullfrog
2001
Wang et al, J Exp Zool



Verasper moseri

Amano (unpublished)



European Sea Bass

Zmora et al (unpublished)



Silver-Gray Brushtail Possum

Lawrence et al (unpublished)



Rio Cauca Caecilian

Ebersole et al, (unpublished)



House Shrew

White et al (unpublished)


Seabream
Sockeye Salmon
1995
Ashihara et al, J Mol Endo



Striped Sea-Bass
1998
Chow et al, J Mol Endo



Haplochromis burtoni
1998
White et al, Gen Comp Endo



Verasper moseri

Amano (unpublished)



European Sea Bass

Zmora et al (unpublished)



Red Sea Bream

Okuzawa (unpublished)









To date, it has been believed that there is only one form of mammalian GnRH that controls the pituitary in mammals. The first GnRH was isolated and characterized from mammals in the early 1970's and is now referred to as mGnRH. However, it is now believed that there are at least two forms of GnRH in all species, which are not just alternative splice variants, but rather are encoded by separate genes (White et al., 1994). The presence of multiple forms of GnRH suggests a functional differentiation, although this has not been characterized.
For example, two main forms of GnRH have been isolated in sea lampreys: lamprey GnRH-I and lamprey GnRH-III. The cDNA (or gene sequence) of lamprey GnRH-I has also been identified, along with cDNA's of eleven of the fifteen known GnRH's in other species. Again, lampreys are studied because they are the most primitive vertebrates for which there are demonstrated functional roles for multiple GnRH neurohormones involved in pituitary-reproductive activity. Thus the study of lamprey can provide insight into higher vertebrate reproduction. Both lamprey GnRH-I and -III have been shown to induce steroidogenesis and spermiation/ovulation in adult sea lampreys (Deragon and Sower, 1994; Gazourian et al., 1997; Sower, 1990; Sower et al., 1993; Sower, 1998).
In studying the various forms of GnRH, which is a ten (10) amino acid protein, the forms most closely related to an ancestral GnRH molecule are most likely the forms present in fishes of ancient origin, for example, lampreys. In all GnRH peptides studied to date, as can be seen from Table 1, certain regions of the molecule have been highly conserved among all species studied, including the NH2-terminal, pGlu1 and Ser4, and the COOH-terminal. The conservation of the NH2- and COOH-termini suggests that these regions are significant for conformation, receptor binding, and resistance to enzymatic degradation, and in receptor-mediated events required for gonadotropin release.
In addition, as can be seen in Table 2, the known cDNA's predict a GnRH consistent with other neuropeptides. The tripartite precursor polypeptide, called prepro-GnRH is synthesized as part of a larger protein which upon post-translational modification yields the mature decapeptide (Klungland et al. 1992). The tripartite prepro-GnRH consists of a leader peptide at the N-terminal hydrophobic signal domain in direct linkage with the GnRH decapeptide; followed by a 3 amino acid dibasic cleavage processing site (GLY-LYS-ARG); and, at the C-terminal end an additional peptide called GnRH associated peptide (GAP). The precursor is processed by cleavage at the dibasic amino acids (LYS-ARG). GnRH and GAP are then stored within the secretory granules until secreted (Wetsel et al., 1991; Endocrinol. 129: 1584-1594).
The mammalian form of GnRH was first isolated form porcine and ovine hypothalamic extracts, giving rise to the popularly held view that only a single form of GnRH is present in all mammals. However, a question that has arisen over the years with respect to mammals is: How does one GnRH differentially regulate the release of two pituitary gonadotropin hormones, LH and FSH? An answer could be found in the fact that, as noted above, in recent years it has been shown that in vertebrates, at least two different forms of GnRH are expressed within the brain, although not necessarily the hypothalamus, of a single species. Generally, where two forms of GnRH have been found, one GnRH is located in the hypothalamus and functions as a neurohormone regulating the pituitary in the control of the gonadotropin release. The second form may have a neurotransmitter or neuromodulatory function and is localized in areas outside the hypothalamus such as in the midbrain regions. In a limited number of mammals a second form of GnRH has been shown to exist, and it is generally extra-hypothalamic. Where two forms of GnRH have been found in a species, it is also believed that separate genes encode for the multiple forms of GnRH (White et al. 1994; Suzuki et al., 2000). In addition, the presence of multiple forms (and locations) of GnRH suggests a functional differentiation (such as differential regulation of FSH and LH), although this has not been characterized.
Based on studies of lampreys and other species in which two forms of GnRH are found, and the high degree of conservation of amino acid sequence between species, study of a known second form of GnRH in one species (for example lampreys) could lead to identification and isolation of a second form of GnRH in other species. If separate genes were found and isolated for multiple forms of GnRH in various species, including primate, and especially human, these findings would have a substantial impact on our understanding of the release of gonadotropins and would be of great value in clinical studies and practical applications.
In addition, the elucidation of the nucleotide sequence of the cDNA's and/or genes of GnRH and other brain hormones in the lamprey is necessary in order to answer questions concerning both comparative analysis of species and the molecular evolution of neuroendocrine hormones in vertebrates. Using such knowledge, in both humans and other species, new GnRH analogs could be developed that may not have the side effects produced with the GnRH analogs currently used in various applications. Study of a novel GnRH in lampreys, and the evolutionary insights yielded therefrom, could lead to discovery of a novel hypothalamic GnRH in mammals which could lead to the formation of new, useful GnRH analogs.
Thus, despite the knowledge of GnRH to date, there remains a need in both marine aquaculture and human medicine for greater knowledge of GnRH and the evolution of neuroendocrine hormones. This knowledge could be used to produce more effective analogs which could better manipulate reproduction in fish, and which could more effectively be used in human therapy, including reproductive and cancer therapy among others.
SUMMARY OF THE INVENTION
Building on previous research, Applicants have isolated and sequenced a novel cDNA, the cDNA encoding for lamprey GnRH-III from four species of lamprey. The present invention provides previously unknown isolated cDNA's which encode for the lamprey GnRH-III that exhibits pituitary-gonadal activity. The present invention provides isolated cDNA's, and the peptides encoded thereby, encoding the lamprey GnRH-III precursor, comprising the coding regions for the lamprey GnRH-III signal peptide, the lamprey GnRH-III decapeptide, the conserved cleavage site, and an associated peptide called GnRH-III associated peptide (GAP). The cDNA of the lamprey GnRH-III were isolated from 4 species of lamprey, from the three families of lamprey: L. tridentatus, and P. marinus from Petromyzonidae; G. australis from the Geotriidae, and M. mordax from the Mordaciidae.
The present invention also provides methods for the manipulation of ovulation and spawning in female and male fish using the lamprey GnRH peptide and analogs thereof, and methods for using the cDNA's encoding lamprey GnRH-III.
To date, two molecular forms of GnRH have been identified and sequenced in the sea lamprey: lamprey GnRH-I and lamprey GnRH-III (Sherwood et al., 1986; Sower et al., 1993). In addition, the cDNA of lamprey GnRH-I has been identified (Suzuki et al., 2000). In lampreys undergoing metamorphosis, there is an increase of brain lamprey GnRH-I and -III that coincides with the acceleration of gonadal maturation (Youson and Sower, 1991). In immunocytochemical studies, both immunoreactive (ir)-lamprey GnRH-I and -III can be found in the cell bodies of the rostral hypothalamus and pre-optic area in larval and adult sea lamprey (King et al., 1988; Nozaki et al., 2000; Tobet et al., 1995; Wright et al., 1994). Most of the ir-GnRH in the brain of larval stage lampreys has been shown to be lamprey GnRH-III. Thus lamprey GnRH-III may be the more active form during gonadal maturation. In addition, in females, it has been demonstrated that lamprey GnRH-III is present in higher concentrations than lamprey GnRH-I during the final stages of the reproductive season in lamprey (MacIntyre et al., 1997). Lamprey GnRH-I concentrations do not change significantly during the reproductive season, whereas lamprey GnRH-III undergoes significant increases during the same period. These results suggest also that lamprey GnRH-III may be the major form regulating reproductive processes in the female sea lamprey during the period of final reproductive maturation.
Such information, comparing GnRH of various species, also suggests that the structure and function of the GnRH's in vertebrates are highly conserved throughout vertebrate evolution.
Thus, in addition to the novel cDNA sequences of the present invention, the present invention also includes methods of manipulation of maturation and spawning of lamprey, using the cDNA's encoding lamprey GnRH-III, lamprey GnRH-III and analogs thereof, including methods of sterilization for male lamprey, and especially methods that sterilize but do not affect the spawning behavior of the males.
In addition, the present invention will further the process of researching the evolution of reproductive biology. As noted above, lampreys and hagfish of the Class Agnatha are of particular importance in understanding endocrinological relationships since they are the modern descendants of the most primitive vertebrates available for study. They represent the oldest lineages of extant vertebrates—which evolved over 550 million years ago. Therefore, the study of lampreys and the characterization of brain and pituitary hormones in lampreys is particularly important for understanding the molecular evolution and functional diversity of reproductive hormones. In addition, understanding the function of GnRH in lamprey could have a substantial impact on our understanding of the release of gonadotropins in mammals and would also be of great value for clinical studies, thus potentially yielding further valuable insight into human reproductive processes.
Thus, an aspect of the invention is to provide the novel cDNA sequences for 4 species of lamprey.
Another aspect of the invention is to provide additional information and knowledge useful to provide insight into vertebrate evolution.
A further aspect of the invention is to provide methods for manipulation and control of reproduction in lamprey.
Yet another aspect of the invention is to provide methods for manipulation and control of reproduction in fish and animals other than lamprey.
A still further aspect of the invention is to provide easy, less expensive and safer methods and systems for controlling and/or regulating reproduction in lamprey and other fish and mammal species.



BRIEF DESCRIPTION OF THE FIGURES
Table 1 (PRIOR ART) lists the amino acid sequences of the 15 previously known GnRH forms. The amino acid sequences of the 15 previously known GnRH forms including lamprey GnRH-III are shown along with the conventionally accepted nomenclature (GnRH peptides are usually named for the species from which they were first isolated). The different forms are grouped based on regions of similarity, with differences from mammalian mGnRH underlined. (SEQ. ID. NO's 23-37)
Table 2 lists the characterized cDNA's of GnRH precursors, and their references.
Table 3 shows the antisense primers used in 5′ RACE for each respective lamprey species of the present invention. (SEQ. ID. NO's 9-12)
Table 4 shows the primer pairs used in full-length transcript isolation for each respective lamprey species of the present invention. (SEQ. ID. NO's 13-20)
Table 5 shows the inhibition constants (K1) of lamprey GnRH-putative antagonists in the pituitary of male land-locked P. marinus. 
FIGS 1a-d list the novel cDNA's of the present invention, from 4 species of lamprey, G. australis, M. mordax, L. tridentatus, and P. marinus respectively, each encoding for the lamprey GnRH-III precursor (prepro-1GnRH-III) (SEQ. ID NO.'s: 1, 3, 5, and 7 respectively). The open reading frame of the prepro-lamprey GnRH-III from each species is underlined, while the poly-adenylation sequence is in bold. The deduced amino acid sequences of the prepro-lamprey GnRH-III peptides from each respective species is below each cDNA sequence.
FIGS. 1a-d also show the deduced amino acid sequence of the prepro-1GnRH-III (SEQ. ID NO.'s 2, 4, 6, and 8 respectively) starting with the 24 amino acid (25 for G. australis) hydrophobic signal peptide which is underlined. The 1GnRH-III decapeptide, is underlined and is followed by the GlyLysArg dibasic cleavage site, and the 55 amino acid GAP (GnRH Associated Peptide) region. The amino acid sequences are shown immediately below their corresponding nucleotide sequences.
FIG. 2 shows secondary structure projections for the lamprey prepro-GnRH-III's of the 4 species of lamprey, G. australis, M. mordax, P. marinus, and L. tridentatus respectively.
FIG. 3 shows the results of experiments in which four groups of 12 sea lampreys each were injected two times with various compounds and behaviors of spawning activity, resting, nest building, swimming, and fanning were monitored.
FIG. 4 is a schematic illustrating a method of the invention for sterilization of male sea lamprey.



DETAILED DESCRIPTION OF THE INVENTION
This invention relates to a form of GnRH, particularly lamprey GnRH-III, and its novel cDNA in four species of three families of lamprey. The invention is based on Applicant's isolation and sequencing of cDNA for lamprey GnRH-III from members of the three families of lamprey in order to assess their phylogenetic relationship and provide insight into the evolution of neuroendocrine hormones, specifically the evolution of the GnRH decapeptide, and its function and regulation in lamprey and other animals.
The DNA molecules of the present invention and the endogenous GnRH peptides encoded thereby as described in FIGS. 1a-d, analogs and/or fragments thereof, and/or any combination of such endogenous and/or analog peptides and/or fragments thereof, including the signal and GAP peptides and/or analogs and/or fragments thereof (hereinafter referred to as “active compound”) may be used to induce or inhibit gonadal development, and to induce and synchronize ovulation, spawning, sperm production, and spermiation. Additionally, Applicant's lamprey GnRH-I and III, and the cDNA of lamprey GnRH-I and III can be used to develop additional analogs for use in reproductive management of lampreys and therapies for other animals, including humans.
As has been shown, the lamprey 1-GnRH-III has a similar amidated decapeptide structure to other GnRH's, but has unique (vs. mammalian GnRH) residues at positions 5-8. (See Table 1). Note also that while Table 1 shows the first amino acid of the 1-GnRH-III peptide as pGlu, and FIGS. 1a-d show the first amino acid of the peptide as Gln, the Gln becomes pGlu in post-translational processing to result in the mature peptide. Thus, Table 1 lists the mature peptides, after processing. Note also, as shown in FIGS. 1a-d, that the 10 amino acid sequence of the decapeptide is the same for all 4 species of lamprey studied with respect to the present invention.
In addition, lampreys are among the few vertebrates to clearly demonstrate roles for multiple GnRH molecules as neurohormones involved in pituitary-gonadal function. Because lampreys have two GnRHs that act as neurohormones controlling the pituitary-gonadal axis and act in a differential manner, it is proposed that an analog to lamprey GnRH-III can be developed in which the spawning behavior would not be affected, yet the lampreys would be sterilized. Such analogs of GnRH may potentially be used to replace Bisazir in the Great Lakes lamprey sterilization program mentioned above. Thus GnRH analogs have the potential to provide a much easier, less expensive and safer method and system for controlling or regulating the lamprey reproduction. Example analogs and methods for sterilizing lamprey are described below.
Endogenous lGnRH-III peptide may be isolated from lamprey brains using standard techniques as described below. In the alternative, active compound may be chemically synthesized using standard automated laboratory techniques. In accordance with the invention, active compound may be formulated for use in any of a variety of methods well known in the art and active compound of the invention may be administered by any of a variety of methods known in the art. Examples of various formulations and methods will be described below.
For example, the compositions of the present invention, as would be used on lamprey or other fish or animals, are preferably administered in a “sustained release” method. The term “sustained release” is understood to mean a gradual release of active compound in a controlled manner. Such sustained release formulations of active compound may be solid and may be prepared in any suitable form such as pellets, discs or rods, or encapsulated in microspheres. Active compound may be administered by methods including implantation of a unit of active compound in the form of pellet, disc, rod, or microsphere, or injection of active compound—either intramuscular, subcutaneous, or intraperitoneal in the form of a suspension of mini-rods or microspheres. Injectable formulations in accordance with the invention in the form of mini-rods or microspheres should be sufficiently small to pass through a syringe. Injectable formulations would be suspended in an injectable solution such as saline or various buffers prior to injection. Certain methods and formulations such as microspheres for microencapsulation are covered by various U.S. patents to Zohar.
Implantable compositions usable with the present invention may preferably comprise about 300 ug of the active compound per unit. When administering an injectable composition in accordance with the invention, the administered composition will preferably comprise about 5-200 ug of the active compound per kg of body weight of the injected fish or other animal. However, the amount of the active compound may, in some cases, be reduced if a very active analog is used. As will be discussed in more detail later, Table 5 shows various 1-GnRH-III analogs used in lamprey sterilization experiments.
As noted, the DNA molecules of the present invention may be used to either induce or inhibit gonadal development, and to induce and synchronize ovulation, spawning, sperm production, and spermiation. In order to induce or inhibit various sexually reproductive activities, active compound comprised of other than the mature peptide or fragments or analogs thereof, may be made using the precursor cDNA, or a portion thereof (for example, a portion encoding the signal peptide, the 1-GnRH-III decapeptide and/or the GAP) and may also, or in the alternative, be administered into fish. One method of such administration may be transfection. Transfection may be achieved, for example, by microinjection, retroviral-mediated integration, electroporation, liposome-mediated delivery, and by high velocity microprojectiles. For a review of such transgenic systems in fish, see Chen et al., 1990, Tibtech 8:209-215 which is incorporated herein by reference in its entirety.
In addition, such a transfected coding sequence may be operatively linked to an inducible promoter using standard laboratory techniques routinely practiced in the art, such that expression may be controlled experimentally. See for example, Ausubel F. M. et al., eds., 1989 Current Protocols in Molecular Biology, Vol. I, Green Publishing Associates, Inc., and John Wiley & Sons, Inc., New York; and Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratories Press, Cold Spring Harbor, N.Y., which are incorporated herein by reference in their entireties. Controlled induction may result in an increase in expression at the appropriate stage of development. Such controlled induction of expression is particularly useful in the production of brute stock for fish breeding, or even use for fertility and reproductive treatments in other animals.
As noted above, the inhibition of gonadal development may be used in order to produce sterile fish and may be achieved by the negative regulation of GnRH. In addition to GnRH analogs that have the potential to provide a much easier, less expensive and safer method and system for controlling or regulating lamprey (or other species) reproduction, other compounds and methods may be useful to inhibit gonadal development. Among the compounds which may exhibit the ability to negatively regulate GnRH are: antisense, ribozyme, and triple helix molecules. Such molecules may be designed to reduce or inhibit either wild type, or if appropriate, mutant target gene activity. Techniques for the production and use of such molecules are well known to those of skill in the art.
Anti-sense RNA and DNA molecules act directly to block the translation of mRNA by hybridizing to targeted mRNA and preventing protein translation. With respect to antisense DNA, oligodeoxyribonucleotides derived from the translation initiation site, e.g., between the −10 and +10 regions of the target gene nucleotide sequence of interest, would be preferred.
Ribozymes are enzymatic RNA molecules capable of catalyzing the specific cleavage of RNA. The mechanism of ribozyme action involves sequence-specific hybridization of the ribozyme molecule to complementary target RNA, followed by an endonucleolytic cleavage. The composition of ribozyme molecules must include one or more sequences complementary to the target gene mRNA, and must include the well-known catalytic sequence responsible for mRNA cleavage. For this sequence, see U.S. Pat. No. 5,093,246, which is incorporated herein by reference in its entirety. As such, within the scope of the invention are various engineered ribozyme molecules that specifically and efficiently catalyze endonucleolytic cleavage of RNA sequences encoding target gene proteins.
The anti-sense RNA and DNA, ribozyme, and triple helix molecules of the invention may be prepared by any method known in the art for synthesis of DNA and RNA molecules. These methods include well-known techniques for chemically synthesizing oligodeoxyribonucleotides and oligoribonucleotides such as for example, solid phase phosphoramidite chemical synthesis. Alternatively, RNA molecules may be generated by in vitro and in vivo transcription of DNA sequences encoding the antisense RNA molecule. Such DNA sequences may be incorporated into a wide variety of vectors which incorporate suitable RNA polymerase promoters such as the T7 or SP6 polymerase promoters. Alternatively, antisense cDNA constructs that synthesize antisense RNA constitutively or inducibly, depending on the promoter used, can be introduced stably into cell lines.
In addition, various well-known modifications to DNA molecules may be introduced as a means of increasing intracellular stability and half-life. Possible modifications include but are not limited to: the addition of flanking sequences of ribo- or deoxy-nucleotides to the 5′ and/or 3′ ends of the molecule, or the use of phosphorothioate or 2′ O-methyl rather than phosphodiesterase linkages within the oligodeoxyribonucleotide backbone. Specific ribozyme cleavage sites and further details known in the art for anti-sense, ribozyme and triple helix formation and use may be found in U.S. Pat. No. 6,210,927 to Zohar (which has been incorporated herein in its entirety).
Note also that it is possible that the antisense, ribozyme, and/or triple helix molecules described herein may so efficiently reduce or inhibit the transcription (for triple helix) and/or translation (antisense, ribozyme) of mRNA produced by normal target gene alleles that the possibility may arise wherein the concentration of normal target gene product present may be lower than is necessary for a normal phenotype. To ensure that substantially normal levels of target gene activity are maintained, therefore, nucleic acid molecules that encode and express target gene polypeptides exhibiting normal target gene activity may, for example, be introduced into cells via gene therapy methods known in the art, that do not contain sequences susceptible to whatever antisense, ribozyme, or triple helix treatments are being utilized. Alternatively, it may be preferable to co-administer normal target gene protein into the cell or tissue of interest in order to maintain the requisite level of cellular or tissue target gene activity.
Therefore, it can be seen that not all methods discussed or contemplated would be preferable for all situations. For example, sterilization of wild lamprey in the Great Lakes would preferably require the simplest methods necessary to prepare active compound, treat and release wild fish, preferably with, for example a single injection. Described below are some specific non-limiting examples and experiments.
Isolation and Sequencing of cDNA's
In the present invention, the cDNA of the GnRH-III was isolated from lamprey brain and sequenced, see FIGS. 1a-d. The isolated cDNA of lamprey GnRH-III codes for a GnRH signal peptide, the 1GnRH-III decapeptide, the cleavage site, and an associated peptide called GnRH associated peptide (GAP). Such a cDNA may be isolated by standard laboratory techniques such as those described in detail below.
The DNA molecules of the present invention may be used to: induce or inhibit gonadal development in lamprey, and to induce and synchronize or control ovulation, spawning, sperm production, and spermiation in lamprey, as well as be used to study the evolution of GnRH, to study neuroendocrine hormones in general, to study the phylogenetic relationship between the three families of lamprey, and to shed light on possible additional forms of GnRH in other animals, including primates and especially humans, for use in reproductive therapy for humans.
With the preceding background and utility in mind therefore, the invention contemplates, in addition to the DNA sequences disclosed herein:

    
    
        1.) Any DNA sequence that encodes the same amino acid sequence as encoded by the DNA sequences shown in FIGS. 4a and b; 
        2.) Any DNA sequence that hybridizes to the complement of the coding sequences disclosed herein under highly stringent conditions, e.g. washing in 0.1×SSC/0.1% SDS at 68° C. (Ausubel F. M. et al., eds., 1989, Current Protocols in Molecular Biology, Vol. 1, Green Publishing Associates, Inc., and John Wiley & Sons, Inc., New York at p. 2.10.3) and still encodes a functionally equivalent gene product; and/or
        3.) Any DNA sequence that hybridizes to the complement of the coding sequences disclosed herein under less stringent conditions, such as moderately stringent conditions e.g., washing in 0.2×SSC/0.1% SDS at 42° C. (Ausubel et al., 1989, supra), and still encodes a functionally equivalent gene product.
    
    


The invention also encompasses:
DNA vectors that contain any portion of the coding sequences disclosed herein, (see FIGS 1a-d), and/or their complements (i.e. antisense);
DNA expression vectors that contain any portion of the coding sequences disclosed herein (again see FIGS. 1a-d), and/or their complements (i.e. antisense) operatively associated with a regulatory element that directs the expression of the coding and/or antisense sequences; and
genetically engineered host cells that contain any portion of the coding sequences disclosed herein, and/or their complements (i.e. antisense), operatively associated with a regulatory element that directs the expression of the coding and/or antisense sequences in the host cell. “Regulatory element” includes, but is not limited to: inducible and non-inducible promoters, enhancers, operators, and other elements known to those skilled in the art that drive and regulate expression. The invention also includes fragments of any of the DNA sequences discussed or disclosed herein.
Materials and Methods
Animals
Adult sea lamprey were collected during their upstream migration at the Cocheco River salmon ladder in Dover, N.H. The lamprey were brought to, and maintained in, the Anadromous Fish and Aquatic Invertebrate Research Laboratory (AFAIR Lab) at the University of New Hampshire. Brain tissue from ammocoete G. australis and M. mordax was collected by Stacia Sower, Hiroshi Kawauchi, Yoriko Kawauchi, Aki Takahashi, Masumi Nozaki, and Jean Joss in Tasmania, Australia, in February of 2001. L. tridentis tissue was received from Criag Robinson from USGS in Cook Washington on Jun. 20th, 2001.
RNA Extraction
RNA was extracted from 114 mg of lamprey brain tissue using ISOGEN reagent (Nippon Gene) and a diethyl-pyrocarbonate (DEPC) treated glass homogenizer (to remove RNases). This method of RNA isolation is based on the acid guanidinium thiocyanate-phenol-chloroform extraction method (Chomzynski and Sacchi, 1987). The yield of RNA was determined via optical density at 260 nm (the wavelength specific to nucleic acid absorbance), and the purity was checked via the ratio of the optical density at 260 nm and 280 nm (the wavelength specific to protein absorbance).
cDNA Synthesis
First strand cDNA synthesis was done using the First Strand cDNA Synthesis kit by Amersham Pharmacia Biotech (Buckinhamshire, England). First strand synthesis uses 5 μg of total RNA and is catalyzed using the Moloney Murine Leukemia Virus (M-MuLV) reverse transcriptase with a Not1-dT18 primer. The RNA was denatured via a 10-minute incubation at 65° C. before being used. Denatured RNA was then mixed with 11 μL of kit reaction mixture (M-MuLV reverse transcriptase, porcine RNAguard, Rnase/DNase-free BSA, dATP, dCTP, dGTP, and dTTP in buffer), 1 μL of 200 mM dithiothreithol (DTT), and 1 μL of 5 g/L Not1-dT18 primer followed by incubation for 1 hour at 37° C. First strand cDNA was stored at −20° C. The single strand cDNA can be amplified vial the polymerase chain reaction (PCR), as described below, or used to make second strand cDNA via the Gubler-Hoffman technique (Gubler and Hoffman, 1983), as done using the MarathonTM cDNA Amplification Kit (Clonetech, Palo Alto, Calif., USA). Second strand cDNA was synthesized from single stranded cDNA mixed with 48.4 μL sterile water, 16 μL 5× second strand buffer (500 mM KCl, 50 mM ammonium sulfate, 25 mM MgCl2, 0.75 mM β-NAD, 100 mM Tris (pH 7.5), and 0.25 mM BSA), 1.6 μL 10 mM dNTPs, and 4 μL of 20× second strand Enzyme Cocktail (6 units/μL E. coli DNA polymerase I, 1.2 units/μL E. coli ligase, and 0.25 units/μL E. coli Rnase H) followed by incubation at 16° C. for 1.5 hours. The second strand cDNA was isolated via rounds of extraction using 25:24:1 phenol:chloroform:isoamyl alcohol followed by 24:1 chloroform:isoamyl alcohol, and was finally precipitated using 4M ammonium acetate and ethanol.
Partial Isolation and Sequence Isolation Using Polymerase Chain Reaction (PCR)
The 3′-end of each cDNA was first amplified via PCR using single stranded cDNA with lamprey 3-1 (GAR-CAY-TGG-TCN-CAC-GAT-TGG) (SEQ. ID NO. 21), a degenerate primer specifically designed for this invention to the lamprey-GnRH-III decapeptide, and the Not-I universal primer (AAC-TGG-AAG-AAT-TCG-C-CCG-GAG GAA) (SEQ. ID. NO. 22) under the following conditions: 10 minute taq polymerase activation period at 94° C. followed by 35 cycles of 94° C. for 1 minute, 60.3° C. for 1 minute, and 72° C. for 1.5 minutes and finally a 10 minute extension period at 72° C. The amplified PCR product was cloned in to the pGEM®-T Easy Vector System (Promega GG, Madison, Wis., USA) and sent to be sequenced at the Core Laboratories at the University of Utah. When looking at the primer sequences, these primers are written, by convention, in groups of 3 base pairs and do not encode for amino acids and thus do not necessarily contain exact multiples of 3 base pairs.
5′ Rapid Amplification of cDNA Ends (5′-RACE)
5′-RACE was performed using the MarathonTM cDNA Amplification Kit (Clonetech, Palo Alto, Calif., USA). A partially double stranded DNA adapter was ligated onto both ends of the synthesized double stranded cDNA, to which a specific primer can be used in combination with a gene-specific sense or anti-sense primer, depending on which end of the cDNA is to be amplified. See Table 3 for the various primers (SEQ. ID NO's 9-12) used with various species of Lamprey. An anti-sense gene-specific primer was used with the adapter primer to amplify the 5′ end of the 1GnRH-III cDNA segment, and was cloned and sequenced as described above in the preceding section.








TABLE 3







Table 3. Antisense primers used in 5′RACE with each respective



species of lamprey.









Species
Primer
Sequence













G. australis
Ga-III-RC-293-313
ggc tct cgc tgg acg ggt tcg





(SEQ. ID. NO. 9)


M. mordax
Mm-III-RC-154-177
ctg cga gag gta act gag gag gtc




(SEQ. ID. NO. 10)


P. marinus
L-3-RC-259-280
ggc gct ctc gag gaa ctt ctc g




(SEQ. ID. NO. 11)


L. tridentatus
Lt-III-RC-429-455
cct aca cac agc cac tct ggg aca cgc




(SEQ. ID. NO. 12)









Full-Length Transcript Isolation

A PCR protocol similar to the protocol used for partial sequence isolation was used to isolate full-length transcripts using the polymerace chain reaction (PCR). Primers designed to the 5′ and 3′ ends of the lamprey GnRH-III sequences from each P. marinus, L. tridentatus, G. australis, and M. mordax where used. See table 4. (SEQ. ID NO.'s 13 and 14; 15 and 16; 17 and 18; and 19 and 20 respectively).








TABLE 4







Table 4. Primer pairs used in full length transcript isolation for each respective species.










Species
5′Primer
3′Primer





G. australis
Ga-III-5′end
Ga-III-3′end



(SEQ. ID. NO. 13)
(SEQ. ID. NO. 14)



gat tcc gct ccg agc cgc gtt gag
ccg aca acg aag tgt agc cca cc


M. mordax
Mm-III-5′end
Mm-III-3′end



(SEQ. ID. NO. 15)
(SEQ. ID. NO. 16)



gca gcg gtt ctc gcc gtg gtt cg
ggc aaa cct aca cac agc cac tct gg


P. marinus
Pm-1GnRH3-5′end
Pm-1GnRH3-3′end-RC



(SEQ. ID. NO. 17)
(SEQ. ID. NO. 18)



gac cgt ctg gaa tca tca cag aag cc
ggc ctt gtt gtt acg cgt ggc c


L. tridentatus
Lt-III-5′end
Lt-III-RC-429-455



(SEQ. ID. NO. 19)
(SEQ. ID. NO. 20)



caa cag acc gtc tgg aat cat cgc agg
cct aca cac agc cac tct ggg aca cgc









Sequence Analysis and Phylogenetic Analysis

The P. marinus, L. tridentatus, G. australis, and M. mordax lamprey-GnRH-III cDNA sequences were analyzed using Editseq (DNA star) and were aligned with all the other known prepro-GnRH sequences using Megalign (DNA Star). Phylogenetic analysis was performed using Phylogenetic Analysis Using Parsimony (PAUP) V4.0b8 using both maximum parsimony and the neighbor joining method. Hydrophilicity (Kyte-Doolittle) and secondary structure (Garnier-Robson) where both predicted using the protein analysis program Protean (DNA Star).
CDNA Isolation Results
The initial PCR experiment with primers Lamprey3-1 and Not-I yielded a sequence fragment from the end of the lamprey-GnRH-III decapeptide to the polyadenylation sequence in each respective species of lamprey. 5′-RACE using the primers described above produced a fragment from the 5′ untranslated region, through the decapeptide, and signal peptide. A full-length transcript of the prepro-lamprey GnRH-III cDNA has been isolated from each of the four species studied. Through overlap of sequence fragments, the entire, novel prepro-lamprey-GnRH-III cDNA sequence has been deduced from each of the four species of lamprey studied. The entire sequence refers to the signal peptide, the decapetide, the processing site and the GAP region.
Referring specifically now to FIGS. 1a-d, in which the cDNA sequence is shown above the corresponding amino acid sequence, the single-letter abbreviations used for the nucleotides and amino acids are the standard abbreviations for the trivial names of the nucleotides and the more common amino acids. It is shown in FIG. 1a that the G. australis lamprey GnRN-III precursor consists of 774 nucleotides or base pairs (bp) (SEQ. ID. NO. 1) in which there is an open reading frame encoding a deduced 94 amino acid sequence (SEQ. ID. NO. 2) as shown in FIG. 1a. 
The M. mordax lamprey GnRH-III precursor consists of 666 base pairs encoding a 92 amino acid sequence (SEQ. ID. NO.'s 3 and 4) respectively as shown in FIG. 1b. 
The L. tridenatus lamprey GnRH-III precursor consists of 733 base pairs encoding a 92 amino acid sequence (SEQ. ID. NO.'s 5 and 6) respectively, as shown in FIG. 1c. 
Finally, the P. marinus lamprey GnRH-III precursor consists of 707 nucleotides (SEQ. ID NO. 7), in which there is an open reading frame encoding a deduced 92 amino acid sequence (SEQ. ID NO. 8), as shown in FIG. 1d. 
Primers were constructed to the very 5′ and 3′ ends of the cDNA to isolate a full-length lamprey GnRH-III cDNA. As with all other prepro-GnRH's, the lamprey prepro-lamprey GnRH-III's consists of a tri-partite structure with a signal peptide, lamprey-GnRH-III decapeptide and dibasic cleavage site, followed by the GAP region.
Secondary structure projections of the lamprey GnRH-III precursors were created for each species using Protean (DNA Star), as shown in FIG. 2. The signal peptide in all four species, like other prepro-GnRH, has a characteristic hydrophobic α-helical structure that ranges from the 1st to the 24th amino acid (residues −24 to −1 of SEQ. ID NO.'s 4, 6 and 8), except in the G. australis, which has a 25 amino acid signal peptide, as seen in SEQ. ID. NO. 2). The GAP region of the four species, although divergent in sequence, consists of a predominantly hydrophilic alpha-helical composition including four turn regions, with a propensity to form a beta-sheet between the 3rd and 4th turn.
The Three Families of Lamprey
Using the first strand cDNA made from total RNA isolated from the hypothalamus of Lampetra tridentatus, Geotria australis, and Mordacia mordax as the template for PCR using the lamprey3-1 primer paired with the Not-I primer, partial cDNA's were isolated encoding from the lamprey-GnRH-III decapeptide to the poly-adenylation sequence from each of the aforementioned species.
The 5′ end of the prepro-lamprey GnRH-III was isolated from each of the 4 species of lamprey via 5′RACE using the gene specific primers listed in Table 3. Finally, a full-length transcript was isolated using primers designed to the very 3′ and 5′ end of the consensus sequence constructed from the results of the degenerate PCR and 5′RACE for each species (see Table 4).
The phylogenetic analysis using the neighbor joining method with the P. marinus, L. tridentatus, G. australis, and M. mordax prepro-lamprey GnRH-III sequences with all the other known prepro-GnRH's shows the lamprey forms grouping separately from the other three clades. In addition, the two southern hemisphere sequences are divergent from the two holarctic sequences, with m. mordax and g. australis belonging to one family and l. tridentatus and p. marinus belonging to a separate family.
Use of GnRH Analogs for Sterilization in Male Sea Lamprey
As noted above, in addition to the novel cDNA sequences disclosed in the present invention, the invention also encompasses methods of using GnRH analogs to sterilize fish, preferably in this case male sea lampreys. Putative lamprey GnRH analogs have been tested to determine those that are reproductively active in the sea lamprey. Reproductive activity was evaluated by measuring the GnRH analog's ability to stimulate or inhibit plasma steroid levels in vivo. In addition, a pituitary perifusion method has been used to evaluate pituitary response to various GnRH analogs. Even though lamprey gonadotropins have yet to be isolated, pituitary responsiveness can be determined by the analog's ability to bind to GnRH pituitary receptors as has been previously demonstrated.
Native GnRH is susceptible to rapid degradation in the blood due to cleavage of the decapeptide, particularly at positions 5-6 and 9-10. Analogs having different amino acids at the relevant positions which render them less sensitive to such enzymatic degradation are thus preferred for use in the compositions according to the present invention. Several such analogs are shown in experiments described below.
The results of various prior experiments described below suggest that the third and sixth positions of lamprey GnRH-I and the sixth position of lamprey GnRH-III are important for function, because they affect the secretion of steroids from gonads. Based on these and other mammalian and teleost studies, Applicant's data suggest that other analogs with substitutions of bulky aliphatic amino acids in the second, third and sixth position of lamprey GnRH-I and -III are likely to be the best analogs for sterilization.
Additional active agents may include, for example, substitutions of positions 6 and/or 7 of the endogenous residues with hydrophobic residues such as D-Trp, for position t, and L-Trp for position 7. Such substituting amino acids and amino acid derivatives may occur singly or in combination with one another. A list of additional potentially suitable substitute amino acids and amino acid derivatives contemplated by the invention may be found in U.S. Pat. No. 4,410,514 to Vale et al. for GnRH Agonists, which is incorporated herein by reference for suitable amino acids and derivatives.
The endogenous 1GnRH peptide used in the experiments described below may be isolated from lamprey brains using techniques described above. Such peptides and analogs may also be chemically synthesized using standard automated laboratory techniques.
The effects of mammalian and lamprey GnRH analogs are summarized in the following paragraphs. In early studies, injections of a synthetic agonist of mammalian GnRH ([D-Ala6, Pro9]Net mammalian GnRH) significantly elevated plasma estradiol and advanced ovulation by at least several weeks in adult female lampreys (Sower et al. 1983). In this same study, a mammalian GnRH antagonist ([Ac-3 Pro1, 4-FD-Phe3, D-Trp3,6] mammalian GnRH), which is a competitive inhibitor of GnRH in mammalian systems, had no apparent effect on plasma estradiol concentrations or on timing of ovulation. These data confirmed that the receptors for GnRH in the sea lamprey are specific and can distinguish between variants in this molecule. [D-Phe2,6, Pro3] lamprey GnRH was one of the first GnRH analogs tested in lamprey and found to be a putative antagonist. It inhibited ovulation in mature female lampreys, and inhibited spermiation and reduced plasma progesterone levels in the male sea lampreys (Sower, 1989; Sower et al., 1987).
Additionally, some GnRH analogs (but, to date, no analogs of lnGnRH-III) have been shown to influence the spawning behavior of lampreys—actually enhancing the spawning act rather than decreasing it. Earlier studies investigated the effects of GnRH and analogs on spawning behavior in adult male and female sea lamprey during three successive spawning seasons (Sower and Hanson, 1992). In each of these experiments, three or four groups of 12 sea lampreys each were injected two times with saline, lamprey GnRH-I, lamprey GnRH agonist [D-Ala6, Pro9 Net lamprey GnRH] or a GnRH antagonist [D-Phe2,3, Pro3 lamprey GnRH]. After the second injection, the lampreys were introduced into an artificial stream channel and behaviors of spawning activity, resting, nest building, swimming and fanning were monitored. The lampreys were observed four times daily for 10 minutes every 1⁄2 hour during 2 hour periods (Exp.'s 1 and 2) or were observed for 6 hours on a continuous basis (Exp. 3). In experiment 2, spawning behavior was inhibited in females treated with lamprey GnRH agonist or antagonist compared to controls. FIG. 3 graphically illustrates the results of experiments 1, 2 and 3, which data previously had not been compiled and comparatively illustrated and presented.
However, in the males, lamprey GnRH agonist or antagonist stimulated earlier spawning activity compared to the controls. In experiment 3, lamprey GnRH antagonist induced earlier spawning activity in males while lamprey GnRH agonist inhibited spawning activity, and lamprey GnRH delayed spawning activity compared to the controls. See FIG. 3 also. These data suggest that lamprey GnRH-I influences spawning behavior in sea lampreys. Furthermore, the responses to GnRH and analogs were different in males compared to females, suggesting that different neuroendocrine mechanisms may be involved in males vs. females.
Further similar unpublished studies with groups of lamprey, using 1GnRH-III and analogs, indicated that lamprey GnRH-III does not influence the lamprey spawning behaviors (Sower, unpublished).
As an example, the effects of lamprey GnRH analogs to lamprey GnRH-III were tested on behavior, spermiation, sperm quality, egg fertilization rate, and embryo survival. Lampreys were injected 11 times over a 35 day period. Lampreys were checked for spermiation 24 hours after injection. Lampreys were tested with 0.1 ml intraperitoneal injections of saline (control) or one of the following treatments:
1) lamprey GnRH III
2) Phe2 Gly6 lamprey GnRH III
3) Phe2 Pro3 Asp6 lamprey GnRH III
4) D-Arg6 lamprey GnRH III
5) N Acetyl dehydro Pro'p Fluro D-Phe2 D-Trp3,6 mammalian GnRH
6) Ac D-pCl Phe1,2 D-Trp3, D-Arg6, D-Ala10 mammalian GnRH
Behavior was monitored for all groups. When a male lamprey was found to be spermiating, it was removed from the tank and artificially spawned with an untreated female. Spermatocrit was assessed and recorded. For determination of fertilization rates, eggs were placed in plastic petri dishes (50 mm in diameter) and held in a constant temperature incubator at 18.3° C., the optimum temperature for development of sea lamprey embryos. Fertilization rate was assessed at 24 hours post-spawning. Embryo survival to the head stage (7-8 days post fertilization) was also assessed and recorded.
Injection with some of the GnRH-III analogs advanced the timing of spermiation but did not inhibit the behavioral response or affect the other reproductive behaviors. In summary, based on the results of these experiments, analogs to lamprey GnRH-III are preferably the best candidates for use in sterilization of lampreys.
Therefore, because lampreys have two GnRH's that act as neurohormones controlling the pituitary-gonadal axis and act in a different manner, an analog to lamprey GnRH-III can be developed in which the spawning behavior is not affected, yet the lamprey would be sterilized. This aspect, of allowing spawning behavior to remain intact, (based on Applicant's finding that 1GnRH-III does not influence the lamprey spawning behaviors), yet sterilizing the fish, is unexpected and important, and is a main focus of the present invention.
In another study, the binding affinity in the pituitary of male sea lampreys was determined with lamprey GnRH-I and -III analogs in an effort to better understand the structure-activity relations of the lamprey GnRH molecule (Materne and Sower, unpublished). Competition studies were performed using the iodinated DAla6, Pro9Net]-mammalian GnRH as the tracer with each of the following analogs: [D-Phe2, Gly6]-1GnRH-I (Peninsula Labs, CA.); and the following 1GnRH-III analogs: [D-Phe2,6, Pro3], [D-Phe2, Gly6], and [Ac-Delta-3Pro, 4FDPhe2-D-Trp3,6] from American Peptide, CA. All lamprey GnRH analogs tested demonstrated a high affinity binding for type-I GnRH binding site while demonstrating a significantly lower affinity for the type-II site. The level of significance was P<0.0001 See TABLE 5 for the results of these experiments. The results shown in Table 5 summarize experiments using various analogs. Self-displacement with [DAla6, Pro9Net]-mammalian GnRH was used as a control, and demonstrated high affinity for type-I and -II binding sites.
Table 5
Inhibition constants (K1) of lamprey GnRH-putative antagonists in the pituitary of adult male land-locked P. marinus. Affinity at the type-I GnRH-binding site was significantly higher than affinity at type-II (p>0.0001). Self-displacement assay with [DAla6, Pro9Net]-mammalian GnRH was used as a control and demonstrated high affinity for both GnRH binding sites. The data were plotted on a logit-log plot and the K1 determined from the IC50 using the Prism software.










TABLE 5







K1 (type-I)
K1 (type-II)



(M)
(M)




















[DAla6 , Pro9Net]-m GnRH
3.11 × 10−12
 8.9 × 10−8



[D-Phe2 , Gly6]-1GnRH-I
1.37 × 10−9  
5.65 × 10−6



[D-Phe2 , Gly6]-1GnRH-III
3.83 × 10−12
6.55 × 10−7



[D-Phe2,6 , Pro3]-1GnRH-III
 3.0 × 10−11
5.22 × 10−5



[Ac-Delta-3Pro, 4FDPhe2-
 7.1 × 10−9 
8.94 × 10−6



D-Trp3,6]-1GnRH-III










The studies testing these analogs showed a dose-dependent displacement by the lamprey GnRH analogs, demonstrating a high affinity binding site and a significantly lower affinity binding site, suggesting therefore, that both binding sites can discriminate between GnRH molecule variants. These inhibition data, taken together with in vivo studies done in Applicant's laboratory showing a decrease in sperm motility when compared to controls, were found to correlate with previous studies where [Gly6] and [D-Phe2,6, Pro3]-lamprey GnRH-I as well as [Ac-Delta-3Pro, 4FDPhe2-D-Trp3,6]-mammalian GnRH antagonists were found to decrease gametogenesis in male and female sea lampreys (Sower, 1987; Sower, 1989; Sower et al., 1983). These in vivo and in vitro studies suggest that both lamprey GnRH-I and -III molecules can be used in the design of antagonists.
In another experiment, sterilization methods usable in the Great Lakes lamprey sterilization program were investigated. Applicant's research suggests that lamprey GnRH analogs may prove to be safer, less expensive chemosterilants than those currently used. However any such methods require a method of controlled or sustained release of the active compound. Sustained release is necessary because the best means for treating wild fish would be a single injection per fish, that can be done in the field.
As noted above, some non-limiting examples of methods of using and administering the active compound (GnRH, agonist, antagonist etc.) include injection intramuscularly or intraperitoneally into the animal. In preferred embodiments, the active compound may be combined with a polymer-based carrier matrix into a sustained release delivery system. A suitable carrier having sustained release properties is chosen on the basis of its gradual release properties in a solution designed to resemble a fish's plasma, such as a ringer solution, other physiological saline solutions, fish serum, or microencapsulation. The polymer-based matrix may comprise natural or synthetic, biodegradable or non-degradable polymers or copolymers known in the art. Several such examples are described in U.S. Pat. No. 5,643,877 to Zohar which is incorporated herein by reference. For additional description of other known suitable carriers and methods for administering and delivering active compound to an animal see U.S. Pat. No. 6,210,927 which has been incorporated herein by reference. Additional methods for ultrasound-mediated administration of compounds to aquatic animals are found in U.S. Pat. No. 5,076,208 to Zohar et al. which is also incorporated herein by reference. Although various methods are known for administration and delivery of active compounds, the effect of route of administration of GnRH analogs has been specifically examined in only a few fish species, and published information is scarce.
Thus, experiments were conducted to determine the optimal injection site and delivery agent that would best ensure a slow, constant release of the active compound, in this case, D-Ala6Pro9Net mammal GnRH (GnRHa) over a period of four weeks. In the plasma, GnRH is easily degraded by protolytic enzymes. Therefore a simple injection will not elevate plasma GnRH levels for the duration of time required to ensure the appropriate reproductive effect. If a GnRH analog were used to sterilize wild fish, the method would have to maintain high levels of GnRH in the plasma for the length of the spawning season, or about 6 weeks in the case of sea lamprey in the Great Lakes. It was believed that controlled release of GnRH could be attained by injection of biodegradable microspheres or implants containing a GnRH analog, and experiments were performed to determine if high enough GnRH levels could be maintained for the required duration using such a method.
In Applicant's experiments microspheres (in a dose of 75 ug GnRHa/lamprey) and 2 mm implants were injected either intramuscularly (IM) or intraperitoneally (IP). At week 1, plasma GnRHa was detected in two-thirds of the lampreys injected IP, either with microspheres (5.0+/−1.3 ng/ml) or implants (1.6+/−0.3 ng/ml). Ninety percent of the lampreys injected IM with microspheres had detectable levels of GnRHa (4.2+/−1.1 ng/ml) after one week. At week 2, ninety-two percent of the lampreys injected IM with microspheres still had detectable levels of GnRHa (3.1+/−1.2 ng/ml), while less than thirty percent of the other two treatment groups (IP with microspheres and IP with implants) had detectable levels of GnRHa.
Only the lampreys injected IM with microspheres still had detectable levels of GnRHa after 3 weeks (2.9+/−1.5 ng/ml). Based on the results of these experiments, the best method of sustained release of GnRHa was determined to be via IM injection using microspheres.
In summary, putative agonists and antagonists that may be used to manipulate, enhance, or otherwise influence reproduction in lampreys have been identified. These analogs are a valuable tool in a sterile-male release program. A schematic summary representation of a method of sterilization of male sea lamprey is shown in FIG. 4. As can be seen, the males ideally display normal spawning behavior, (enabled by use of an 1GnRH-III analog that does not affect spawning behavior), but would not be able to fertilize the eggs.
Conclusion
In summary, the cDNA encoding the prepro-lamprey GnRH-III has been isolated from four representative species from the three families of lamprey: Petromyzon marinus and Lampetra tridentatus from the Petromyzonidae; Geotria australis from the Geotriidaie; and Mordacia mordax from the Mordaciidae. The cDNA from each species was found to have an open reading frame that encoded a peptide consistent with the conserved prepro-GnRH tripartite structure; namely the signal peptide, the lamprey GnRH-III decapeptide and dibasic cleavage site, followed by the GnRH associate peptide (GAP).
Such information is extremely useful for controlling reproduction of lamprey, preferably without disturbing their normal spawning behavior, for study of lamprey and vertebrate evolution, and for providing insight into other potential forms of GnRH for use in reproductive control and/or therapy of other animals, including humans.
Based on Applicant's experiments, it is possible that a lamprey GnRH analog may present a viable alternative and/or complement to the use of bisazir for use in the sterile male release program in the Great Lakes. The active compound tested is easily injected into lampreys in the field, and can be packaged in a sustained release delivery system that allows the GnRH to be released in the lamprey for the duration of spawning season, following only a single injection. Further testing of GnRH analogs may yield even better methods of sterilization.
The advantages of using GnRH analogs for regulation of reproduction in lamprey and other animals (either for induction or inhibition of reproduction) is high because these compounds are proteins which are easily degraded within the organism, are non-toxic, are easy to administer, are low in cost and are relatively easy to synthesize. Additionally, GnRH analogs have good potential to be approved by the FDA. GnRH analogs have already been approved for use in enhancing fish reproduction in aquaculture, and an analog of GnRH is one of the leading chemical treatments for advance prostate cancer in men and endometriosis in women.
While the above description and examples disclose some preferred embodiments of the invention, the invention is not limited in scope by the specific embodiments described. The described embodiments are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. There may be variations and modifications of the invention, in addition to those shown and described herein, that, while not specifically described, do not depart from the spirit and scope of the invention as described above and in the appended claims, and which will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.

## Claims

1. An isolated polynucleotide comprising the nucleotide sequence set forth in SEQ ID NO: 7 or the complement of said nucleotide sequence.

2. An isolated polynucleotide comprising a nucleotide sequence encoding a polypeptide having the amino acid sequence set forth in SEQ ID NO: 8 or the complement of said nucleotide sequence.

3. The isolated polynucleotide of claim 1 or 2 which is DNA.

4. The isolated polynucleotide of claim 1 or 2 which is RNA.

5. The isolated polynucleotide of claim 1 or 2 which further comprises a label.

6. A polynucleotide vector containing the polynucleotide of claim 1 or 2.

7. An expression vector containing the polynucleotide of claim 1 or 2 in operative association with a nucleotide regulatory element which controls expression of the polynucleotide in a host cell.

8. An isolated or cultured host cell into which the polynucleotide of claim 1 or 2 has been introduced.

9. An isolated or cultured host cell into which the polynucleotide of claim 1 or 2 has been introduced, wherein the polynucleotide is in operative association with a nucleotide regulatory element which controls expression of the polynucleotide in the host cell.

10. An isolated polynucleotide comprising (a) the nucleotide sequence set forth in SEQ ID NO: 7 from nucleotide residue number 107 to 385 or the complement of said nucleotide sequence.

11. An isolated polynucleotide consisting of the nucleotide sequence set forth in SEQ ID NO: 7 or the complement of said nucleotide sequence.

12. An isolated polynucleotide consisting of a nucleotide sequence encoding a polypeptide having the amino acid sequence set forth in SEQ ID NO: 8 or the complement of said nucleotide sequence.

13. An isolated polynucleotide consisting of the nucleotide sequence set forth in SEQ. ID. NO. 7 from residue number 107 to 385 or the complement of said nucleotide sequence.

14. An isolated polynucleotide comprising the nucleotide sequence set forth in SEQ ID NO: 7.

15. An isolated polynucleotide comprising a nucleotide sequence encoding a polypeptide having the amino acid sequence set forth in SEQ ID NO: 8.

16. A method of producing a polypeptide encoded by the polynucleotide of claim 14 or 15 comprising the steps of:
growing a host cell comprising said polynucleotide in a culture; and 
collecting the polypeptide from the culture.