<PAGE>   1
                       SECURITIES AND EXCHANGE COMMISSION
                             Washington, D.C. 20549

                             ----------------------

                                    FORM 10-Q

(Mark One)
[X]  QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE
     ACT OF 1934

   For the quarterly period ended June 30, 1999

                                       OR

[ ]  TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES
     EXCHANGE ACT OF 1934

   For the transition period from                    to
                                  ------------------    ------------------

                         Commission file number 1-11097

                       3CI COMPLETE COMPLIANCE CORPORATION
              ----------------------------------------------------
             (Exact name of registrant as specified in its charter)

                   Delaware                             76-0351992
                   --------                             ----------
        (State or other jurisdiction of              (I.R.S. Employer
          incorporation or organization)            Identification No.)

                   910 Pierremont, #312 Shreveport, LA. 71106
                   ------------------------------------------
                    (Address of principal executive offices)
                                   (Zip Code)

                                 (318) 869-0440
                                 --------------
              (Registrant's telephone number, including area code)

                             ----------------------

         Indicate by check mark whether the registrant (1) has filed all reports
required to be filed by Section 13 or 15(d) of the Securities Exchange Act of
1934 during the preceding 12 months (or for such shorter period that the
registrant was required to file such reports), and (2) has been subject to such
filing requirements for the past 90 days.

         YES [X]   NO [ ]

                            ------------------------


         Indicate the number of shares outstanding of each of the issuer's
classes of Common Stock, as of the latest practicable date.

         The number of shares of Common Stock outstanding as of the close of
business on August 13, 1999 was 9,197,325.


<PAGE>   2
                       3CI COMPLETE COMPLIANCE CORPORATION


                                    I N D E X



<TABLE>
<CAPTION>
                                                                                                PAGE
                                                                                                NUMBER
                                                                                                ------
<S>              <C>                                                                            <C>
PART I.          FINANCIAL INFORMATION

      Item 1.    Financial Statements

                 Consolidated Balance Sheets as of
                    June 30, 1999 (unaudited) and September 30, 1998........................      3

                 Consolidated Statements of Operations for the three months and
                    nine months ended June 30, 1999 and 1998 (unaudited)....................      4

                 Consolidated Statements of Cash Flows for the
                     nine months ended June 30, 1999 and
                     1998 (unaudited).......................................................      5

                 Notes to Consolidated Financial Statements (unaudited).....................      6


      Item 2.    Management's Discussion and Analysis of Financial
                    Condition and Results of Operations.....................................      9

PART II.         OTHER INFORMATION

      Item 1.    Legal Proceedings  ........................................................     12

      Item 2.    Changes in Securities......................................................     12

      Item 3.    Defaults Upon Senior Securities............................................     12

      Item 4.    Submission of Matters to a Vote
                    Of Security Holders.....................................................     12

      Item 5.    Other Information  ........................................................     12

      Item 6.    Exhibits and Reports on Form 8-K...........................................     12

SIGNATURES  ................................................................................     15
</TABLE>


                                       2
<PAGE>   3
ITEM 1.  FINANCIAL STATEMENTS

                       3CI COMPLETE COMPLIANCE CORPORATION
                          CONSOLIDATED BALANCE SHEETS
                                   (UNAUDITED)


<TABLE>
<CAPTION>
                                                                                     JUNE 30,        SEPTEMBER 30,
                                                                                       1999              1998
                                                                                   ------------      ------------
<S>                                                                                <C>               <C>
                            ASSETS
Current Assets:
   Cash and cash equivalents                                                       $    298,184      $         --
   Restricted cash                                                                           --                --
   Accounts receivable, net allowances of $311,539 and $573,937
     at June 30, 1999 and September 30, 1998, respectively                            2,576,350         3,252,673
   Inventory                                                                             67,875            96,771
   Other current assets                                                                 605,875           737,372
                                                                                   ------------      ------------
       Total current assets                                                           3,548,284         4,086,816
                                                                                   ------------      ------------

Property, plant and equipment, at cost                                               14,113,812        13,780,158
      Accumulated depreciation                                                       (4,925,802)       (3,883,073)
                                                                                   ------------      ------------
         Net property, plant and equipment                                            9,188,010         9,897,085
                                                                                   ------------      ------------

Excess of cost over net assets acquired, net of accumulated amortization of
 $128,738 and $99,988 at June 30, 1999 and September 30, 1998, respectively             428,493           337,243

Other intangible assets, net of accumulated amortization of $279,571 and
      $223,656 at June 30, 1999 and September 30, 1998, respectively                     93,190           149,104
Other assets                                                                             94,270           148,092
                                                                                   ------------      ------------
       Total assets                                                                $ 13,352,247      $ 14,618,340
                                                                                   ============      ============


LIABILITIES AND SHAREHOLDERS' EQUITY
Current Liabilities:
   Bank Overdrafts                                                                 $         --      $    666,834
   Notes payable                                                                        305,942           352,388
   Current portion of long-term debt, unaffiliated lenders                              838,917         1,619,889
   Accounts payable                                                                     970,617         1,646,751
   Accounts payable, affiliated companies                                                 1,275           483,406
   Accrued liabilities                                                                  785,550         1,098,634
   Note payable majority shareholder                                                  6,082,843         5,004,403
                                                                                   ------------      ------------
        Total current liabilities                                                     8,985,144        10,872,305
                                                                                   ------------      ------------

Long-term debt unaffiliated lenders, net of current portion                           1,247,583           986,524

                                                                                   ------------      ------------
        Total liabilities                                                            10,232,727        11,858,829
                                                                                   ------------      ------------


Shareholders' Equity:
   Preferred stock,$0.01 par value, authorized 16,050,000 shares;
     Issued and outstanding 7,750,000 at June 30, 1999
        and September 30, 1998, respectively                                             77,500            77,500
   Additional Paid-in capital - preferred stock                                       7,672,500         7,672,500
   Common stock, $0.01 par value, authorized 40,450,000 shares;
     Issued and outstanding 9,232,825 and 9,154,811 at
     June 30, 1999 and September 30, 1998, respectively                                  92,329            92,329
   Less cost of treasury stock (35,500 shares)                                          (55,777)          (44,516)
   Additional Paid-in capital - common stock                                         20,259,779        20,259,779
   Accumulated deficit                                                              (24,926,811)      (25,298,081)
                                                                                   ------------      ------------
        Total Shareholders' equity                                                    3,119,520         2,759,511
                                                                                   ------------      ------------
        Total liabilities and shareholders' equity (deficit)                       $ 13,352,247      $ 14,618,340
                                                                                   ============      ============
</TABLE>


 The accompanying notes are an integral part of these financial statements.


                                       3
<PAGE>   4



                       3CI COMPLETE COMPLIANCE CORPORATION
                 PROFORMA CONSOLIDATED STATEMENTS OF OPERATION
                                   (UNAUDITED)


<TABLE>
<CAPTION>
                                                       FOR THE             FOR THE            FOR THE            FOR THE
                                                  THREE MONTHS ENDED  THREE MONTHS ENDED  NINE MONTHS ENDED  NINE MONTHS ENDED
                                                       JUNE 30,            JUNE 30,           JUNE 30,           JUNE 30,
                                                        1999               1998                1999               1998
                                                  ------------------  ------------------  -----------------  -----------------
<S>                                               <C>                 <C>                 <C>                <C>
Revenues                                          $        4,457,973  $        4,715,964  $      13,568,396  $      14,127,077
Expenses:
     Cost of Services                                      3,183,389           3,535,882          9,628,364         10,474,755
     Depreciation and Amortization                           432,820             326,249          1,324,198            929,651
     Selling, general and administrative                     717,532             610,133          2,202,055          2,151,511
                                                  ------------------  ------------------  -----------------  -----------------
     Net income (loss) from Operations             $         124,232  $          243,700  $         413,779  $         571,160

Other Income (expense):
      Net interest expense,                                 (225,940)           (157,312)          (681,986)         (457,168)
      Other income (expense)                                 (43,422)            (49,673)           639,477          (177,047)
                                                  ------------------  ------------------  -----------------  -----------------
      Total other income (expense)                          (269,362)           (206,985)           (42,509)         (634,215)
                                                  ------------------  ------------------  -----------------  -----------------

Net income (loss)                                 $         (145,130) $           36,715  $         371,270  $         (63,055)
                                                  ==================  ==================  =================  =================

Weighted average number of shares outstanding
      common shares outstanding - basic                    9,197,325           9,116,026          9,199,432          9,143,519
                                                  ==================  ==================  =================  =================

Weighted average number of shares outstanding
      common shares outstanding - diluted                  9,197,325           9,116,026         16,949,432          9,143,519
                                                  ==================  ==================  =================  =================

Earnings per share - basic                        $            (0.02) $             0.01  $            0.04  $           (0.01)
                                                  ==================  ==================  =================  =================

Earnings per share - diluted                      $            (0.02) $             0.01  $            0.02  $           (0.01)
                                                  ==================  ==================  =================  =================
</TABLE>



                                       4
<PAGE>   5



                       3CI COMPLETE COMPLIANCE CORPORATION
                     CONSOLIDATED STATEMENTS OF CASH FLOWS
                                   (UNAUDITED)



<TABLE>
<CAPTION>
                                                                                      FOR THE               FOR THE
                                                                                  NINE MONTHS ENDED     NINE MONTHS ENDED
                                                                                       JUNE 30,             JUNE 30,
                                                                                         1999                 1998
                                                                                  -----------------     -----------------
<S>                                                                               <C>                   <C>
Cash flow from operating activities:
   Net income (loss)                                                                        371,270               (63,055)
   Adjustments to reconcile net income (loss) to net cash
      provided by (used in) operating activities:
      (Gain) loss on disposal of fixed and intangible assets                               (819,976)                   --
      Depreciation and amortization                                                       1,324,198               929,651
      Unpaid Interest included in long-term debt
      Change in assets and liabilities, net
            (Increase) decrease in restricted cash                                               --                    --
            (Increase) decrease in accounts receivable, net                                 676,323               746,200
            (Increase) decrease in inventory                                                 28,896               (14,949)
            (Increase) decrease in prepaid expenses                                         131,497              (278,768)
            (Increase) decrease in other assets                                              53,822                    --
            Increase (decrease) in accounts payable                                        (676,134)              346,339
            Increase (decrease) in accounts payable, affiliated companies                     1,275                67,500
            Increase (decrease) in accrued liabilities                                     (313,084)           (1,354,855)
                                                                                  -----------------     -----------------
                          Total adjustments to net loss                                     406,817               441,118
                                                                                  -----------------     -----------------
                          Net cash provided by (used in) operating activities               778,087               378,063
                                                                                  -----------------     -----------------


Cash flow from investing activities:
      Proceeds from sale of property, plant and equipment                                   681,099                98,932
      Purchase of property, plant and equipment                                            (511,581)           (1,411,360)
                                                                                  -----------------     -----------------
                          Net cash used in investing activities                             169,518            (1,312,428)
                                                                                  -----------------     -----------------


Cash flow from financing activities:
      Increase (decrease) in bank overdrafts                                               (666,834)              198,722
      Proceeds from issuance of notes payable                                               918,533             1,088,116
      Principal reduction of notes payable                                                 (964,979)             (663,522)
      Proceeds from issuance of long-term debt                                              342,572               632,948
      Reduction of long-term debt, unaffiliated lenders                                    (862,486)           (1,091,676)
      Repurchase of treasury stock                                                          (11,261)              (35,105)
      Proceeds from issuance of note payable to majority shareholders                     1,732,579               500,000
      Interest added to note payable to majority shareholders                               141,570               304,882
      Reduction to note payable to majority shareholders                                 (1,279,115)                   --
                                                                                  -----------------     -----------------
                          Net cash provided (used) in financing activities                 (649,421)              934,365
                                                                                  -----------------     -----------------

Net decrease in cash and cash equivalents                                                   298,184                    --
                                                                                  -----------------     -----------------

Cash and cash equivalents, beginning of period                                                   --                    --
                                                                                  -----------------     -----------------

Cash and cash equivalents, end of period                                                    298,184     $              --
                                                                                  =================     =================
</TABLE>




The accompanying notes are an integral part of these financial statements.



                                       5
<PAGE>   6
                       3CI COMPLETE COMPLIANCE CORPORATION
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                                  JUNE 30, 1999
                                   (UNAUDITED)


(1)    BASIS OF PRESENTATION

         The accompanying unaudited Consolidated Financial Statements have been
prepared in accordance with generally accepted accounting principles for interim
financial information and pursuant to the rules and regulations of the
Securities and Exchange Commission. As applicable under such regulations,
certain information and footnote disclosures normally included in annual
financial statements prepared in accordance with generally accepted accounting
principles have been condensed or omitted. The Company believes that the
disclosures in the accompanying Consolidated Financial Statements are adequate
to make the information presented not misleading. In the opinion of management,
all adjustments necessary for a fair presentation for the periods presented have
been reflected and are of a normal recurring nature which are necessary for a
fair presentation of these financial statements. These financial statements
should be read in conjunction with the financial statements and notes thereto
for the three years ended September 30, 1998, as filed with the Company's Annual
Report on Form 10-K. The results of operations for the nine-month period ended
June 30, 1999 are not necessarily indicative of the results that may be achieved
for the entire year ending September 30, 1999.

(2)      BUSINESS CONDITIONS

         The Company has experienced an overall improvement in its cash flows
from operations during the nine months ended June 30, 1999. In recent years the
Company experienced significant cash short falls caused in large part by the
debt incurred in connection with acquisitions and the expenses related to
certain litigation arising from those acquisitions and a minority shareholder
suit settled in 1998.

         Competition in the medical waste industry has been high for several
years. The Company competes against companies that have access to greater
capital resources. One of those competitors is Stericycle, Inc. which owns 100%
of the capital stock of Waste Systems, Inc. ("WSI"), the Company's majority
shareholder. The Company has historically been able to benefit from its
relationship with WSI. The Company has received financial and other assistance
which otherwise may not have been available.

         The Company has substantial indebtedness owed to WSI. This indebtedness
currently consists of (i) an Amended and Restated 1995 Note (the "Restated 1995
Note") in the principal amount of $5,488,000, and (ii) a Loan Agreement and Note
Amendment dated December 31, 1998 in the principal amount of $750,000. Through a
series of transactions described below, certain additional debt that the Company
previously owed to WSI was converted into 7,000,000 shares of the Company's
Series B Convertible Preferred Stock, par value $.01 per share (the "Series B
Preferred Stock") and 750,000 shares of the Company's Series C Convertible
Preferred Stock, par value $.01 per share (the "Series C Preferred Stock"). The
Series B Preferred Stock and Series C Preferred Stock have substantially
identical terms.

         In June 1997, WSI converted $7,000,000 of debt into 1,000,000 shares of
the Company's Series A preferred stock and canceled the 1996 Credit Facility and
reduced the outstanding indebtedness of the


                                       6
<PAGE>   7


1995 Note by $4,300,000. During February 1998, the Company and WSI converted an
additional $750,000 of debt under the 1995 into Series C preferred stock. In
March 1998, the Company exchanged 1,000,000 shares of Series A preferred stock
for 7,000,000 shares of Series B preferred stock.

         On October 1, 1998, WSI and the Company executed the Restated 1995
Note. The principal amount of the Restated 1995 Note was approximately
$5,488,000, which includes the then outstanding balance under the 1995 Note and
certain amounts owed to WSI as of September 30, 1998. The Restated 1995 Note
bears interest at the prime plus 2.0%. Interest is payable in quarterly
installments on the last business day of each quarter, with the first
installment being payable on the last business day of January 1999. Accrued and
unpaid interest outstanding on December 31, 1998 was capitalized and added to
the principal amount of this Note effective at January 1, 1999. The outstanding
principal of this Note and accrued but unpaid interest is due and payable on
September 30, 1999 (the "Initial Maturity Date"). The Company may, at any time
on or before the Initial Maturity Date, extend the maturity to a date not later
than March 31, 2000 (the "Subsequent Maturity Date") upon payment to WSI a
commitment fee equal to 1.0% of the outstanding principal amount on the 1995
Restated Note. The Company may at any time on or before the Subsequent Maturity
Date extend the maturity to a date not later than September 30, 2000 upon
payment to WSI of a commitment fee equal to 1.5% of the outstanding principal
amount of the 1995 Restated Note. Under the terms of the Restated 1995 Note, the
Company is among other things, is required to maintain minimum levels of net
worth and profitability, which at June 30, 1999 these levels have been met. As
of June 30, 1999, the outstanding balance of this promissory note is
approximately $5,788,000.

         On December 18, 1998, WSI and the Company entered into a Loan Agreement
and Note Amendment (the "New Loan") under which WSI agreed to lend $750,000 to
the Company. Borrowings under the New Loan bear interest at the lesser of (i)
Prime Rate plus 3.0% or (ii) the Maximum Rate. In either case, accrued and
unpaid interest outstanding on June 30, 1999 was capitalized and added to the
principal amount of the New Loan effective as of July 1, 1999. Interest accruing
after June 30, 1999 shall be due and payable in monthly installments on the last
day of each month, with the first such installment being due and payable on the
last day of July 1999. The outstanding principal balance of the New Loan is due
and payable on September 30, 1999. The maturity date of the New Loan may not be
extended. Included in the New Loan is a Sale Event fee, whereby a fee shall be
due to WSI based on the occurrence of a Sale Event, the aggregate fee payable
that shall not exceed $50,000. Under the terms of the New Loan, the Company is
among other things, required to maintain minimum levels of net worth and
profitability, the same as the Restated 1995 Note. As of June 30, 1999, the
outstanding balance of this promissory note is approximately $295,000.

         In January 1999, the Company sold for $920,000 certain assets of its
medical waste collection business to American Medical Disposal, Inc., an
Oklahoma corporation. Simultaneously with this transaction the Company acquired
certain operating assets of American Medical Disposal, Inc., within the
Company's current operating geographical area.

         During the fiscal year 1998, the Board of Directors of the Company
authorized the repurchase of up to 150,000 shares of 3CI common stock from time
to time in the open market. Since the authorization by the board of Directors,
the Company has repurchased 34,500 shares at cost of $55,777 as of June 30,
1999. The company has ceased the repurchase of common stock.

         On March 15, 1999, the Company received notification from NASDAQ Stock
Market, Inc. of failure to meet the minimum bid price requirement for continued
listing of its common stock for trading on the NASDAQ SmallCap Market. A hearing
took place on July 29, 1999, before a Nasdaq panel, which will determine whether
3CI's common stock will be delisted. Based upon recent communications from
Nasdaq, 3CI's believes that a substantial likelihood exists that 3CI's common
stock will be delisted. In the event of delisting, 3CI has been advised by
Nasdaq that if a delisting were


                                       7
<PAGE>   8


to occur the Company will automatically have its common stock listed for trading
on the Nasdaq Bulletin Board.


(3)      COMMITMENTS AND CONTINGENCIES

         The Company is subject to certain other litigation and claims arising
in the ordinary course of business. In the opinion of management of the Company,
the amounts ultimately payable, if any, as a result of such litigation and
claims will not have a materially adverse effect on the Company's financial
position or results of operations.

         The Company operates within the regulated medical waste disposal
industry which is subject to intense governmental regulation at the federal,
state and local levels. The Company believes it is currently in compliance in
all material respects with all applicable laws and regulations governing the
medical waste disposal business. However, continuing expenditures may be
required in order for the Company to remain in compliance with existing and
changing regulations. Furthermore, because the medical waste disposal industry
is predicated upon the existence of strict governmental regulation, any material
relaxation of regulatory requirements governing medical waste disposal or of
their enforcement could result in a reduced demand for the Company's services
and have a material adverse effect on the Company's revenues and financial
condition. The scope and duration of existing and future regulations affecting
the medical waste disposal industry cannot be anticipated and are subject to
changing political and economic pressures.


                                       8
<PAGE>   9


Item 2.   MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND
          RESULTS OF OPERATIONS

                              RESULTS OF OPERATIONS

The following table summarizes (in thousands) the Company's operations:

<TABLE>
<CAPTION>
                                             Three Months Ended June 30,               Nine Months Ended June 30,
                                             ---------------------------               --------------------------

                                       ------------------ ---------------------  ---------------------  --------------------
                                             1999                 1998                  1999                   1998
                                       ------------------ ---------------------  ---------------------  --------------------
<S>                                    <C>          <C>   <C>            <C>     <C>            <C>     <C>           <C>
                                                     %                     %                      %                     %
Revenue                                  $ 4,458      100   $ 4,716         100    $13,568         100     $14,127       100
Cost of Services                          (3,183)   (71.4)   (3,536)      (75.0)    (9,628)      (70.9)    (10,475)    (74.1)
Depreciation and amortization               (433)    (9.7)     (326)       (6.9)    (1,324)       (9.8)       (930)     (6.6)
Selling Gen. & Admin.                       (718)   (16.1)     (610)      (12.9)    (2,202)      (16.2)     (2,151)    (15.2)
Net income (loss) from operations            124      2.8       244         5.2        414         3.1         571       4.1
Other Exp. & Net interest exp.              (269)    (6.0)     (207)       (4.4)       (43)      (.004)       (634)     (4.5)
Net income (loss)                           (145)    (3.2)       37        .008        371         2.7         (63)     (.04)
</TABLE>

THREE MONTHS ENDED JUNE 30, 1999 COMPARED TO THREE MONTHS ENDED JUNE 30, 1998:

REVENUES decreased by $257,991, or 5.5%, to $4,457,973 during the three month
period ended June 30, 1999, from $4,715,964 for the three months period ended
June 30, 1998. This decrease was primarily a result of the Company selling off
certain routes in its Oklahoma territory.

COST OF SERVICES decreased by $352,493 or approximately 10.0%, to $3,183,389 for
the three months ended June 30, 1999, as compared to $3,535,882 for the three
month period ended June 30, 1998. The decrease is attributable to lower costs at
the Company's treatment facilities and a reduction in transportation cost, as
well as the sale of certain routes. Costs of services as a percentage of
revenues decreased to 71.4% during the three months ended June 30, 1999, as
compared to 75.0% during the three months ended June 30, 1998.

DEPRECIATION AND AMORTIZATION expense increased to $432,820 for the three months
ended June 30, 1999, from $326,249 from the three months ended June 30, 1998.
This increase is primarily due to management's decision to revise the useful
lives of certain incinerators, bag houses and other treatment technology to
reflect a more accurate estimated life, and due to increased purchases of
transportation and property, plant and equipment assets.

SELLING, GENERAL AND ADMINISTRATIVE expense increased to $717,532 during the
three months ended June 30, 1999, from $610,133 during the three months ended
June 30, 1998. The increase was primarily attributable to a one time adjustment
to bad debt reserve for $130,000 included in the three month ended June 30,
1998. Selling, general and administrative expenses increased as a percentage of
revenue to 16.1% in the three months ended June 30, 1999, as compared to 12.9%
for the three months ended June 30, 1998 due to the decrease in revenue
described above.

INTEREST EXPENSE increased by $69,488 or 43.8%, to $228,045 during the three
months ended June 30, 1999, as compared to $158,557 for the three months ended
June 30, 1998. This increase resulted from increased borrowings to purchase
capital equipment and an increase in its borrowing rate from WSI.


                                       9
<PAGE>   10


NINE MONTHS ENDED JUNE 30, 1999 COMPARED TO NINE MONTHS ENDED JUNE 30, 1998:

REVENUES decreased by $558,617, or 4.0%, to $13,568,396 during the nine month
period ended June 30, 1999, from $14,127,077 for the nine month period ended
June 30, 1998. This decrease is primarily a result of the Company selling off
certain routes in its Oklahoma territory.

COST OF SERVICES decreased by $846,391 or approximately 8.1%, to $9,628,364 for
the nine months ended June 30, 1999, as compared to $10,474,755 for the nine
month period ended June 30, 1998. The decrease is attributable to lower costs at
the Company's treatment facilities and a reduction in transportation cost, as
well as the sale of certain routes. Costs of services as a percentage of
revenues decreased to 71.0% during the nine months ended June 30, 1999, as
compared to 74.1% during the nine months ended June 30, 1998.

DEPRECIATION AND AMORTIZATION expense increased to $1,324,198 for the nine
months ended June 30, 1999, from $929,651 from the nine months ended June 30,
1998. This increase is primarily due to management's decision to revise the
useful lives of certain incinerators, bag houses and other treatment technology
to reflect a more accurate estimated life, and increased purchases of
transportation and property, plant and equipment assets.

SELLING, GENERAL AND ADMINISTRATIVE expense increased to $50,544, to $2,202,055
for the nine months ended June 30, 1999, as compared to $2,151,511 for the nine
months ended June 30, 1998. This increase was primarily attributable an increase
in sales and marketing, and a one time adjustment to bad debt reserve for
$130,000, included in the three month ended June 30, 1998. Selling, general and
administrative expenses increased as a percentage of revenue to 16.2% in the
nine months ended June 30, 1999, as compared to 15.2% for the nine months ended
June 30, 1998.

INTEREST EXPENSE increased by $225,797 or 49.1%, to $685,645 during the nine
months ended June 30, 1999, as compared to $459,848 for the nine months ended
June 30, 1998. This increase resulted from increased borrowings to purchase
capital equipment and an increase in its borrowing rate from WSI.


                         LIQUIDITY AND CAPITAL RESOURCES

OPERATING ACTIVITIES:

        At June 30, 1999, the Company's net working capital was a negative
$(5,436,860) compared to a negative net working capital of $(6,785,489) at
September 30, 1998. This increase in net working capital of $1,348,629 is due to
increased billing efficiency, which improved accounts receivable turnover and
collections. As a result of this improvement net cash provided by operating
activities increased to $778,087 during the nine months ended June 30, 1999, as
compared to $378,063 during the same period ended June 30, 1998. This increase
in cash flow from operations is primarily due to the decrease accounts
receivable and a decrease in accounts payables and accrued liabilities.

Earnings before interest, taxes, depreciation and amortization increased
$1,053,690, or approximately 79.6% for the nine months ended June 30, 1999 to
$2,377,545, as compared to $1,323,764 for the same period ended June 30, 1998.
This increase consisted of the sale of certain routes described above totaling
approximately $800,000 and an overall improvement in the operations of the
Company.

INVESTING ACTIVITIES:

        During the nine months ended June 30, 1999, the Company invested
$511,581 as compared to $1,411,360 for the same time period ended 1998. This
decrease is primarily related to the Company constructing new treatment
technology in the nine months month ended 1998.


                                       10
<PAGE>   11


FINANCING ACTIVITIES:

        The Company has historically funded its operations, acquisitions, and
debt service through cash advances from WSI. The Company's indebtedness
currently consists of amounts owed to WSI, insurance premiums that are financed
over the course of each fiscal year, debt incurred in connection with the
construction of the Chem-Clav unit, and the indebtedness incurred in connection
with the purchase of rolling stock.

Net cash used by financing activities was $(649,421) during the nine months
ended June 30, 1999, as compared to net cash provided in financing activities of
$934,365 for the same period ended June 30, 1998. The difference between the
period's results primarily in the repayment of bank overdrafts, notes payable,
long-term debt, and the interest of affiliated debt.


YEAR 2000 ISSUES

         The Company has developed a plan to modify its information technology
for the year 2000 and has begun converting critical data processing systems. The
Company currently expects the project to be substantially completed by October
1999 at a cost not to exceed $50,000. The Company has an established plan in
place to address all hardware and software issues related to its business.
Furthermore, the business is not materially impacted by the interfaces with
either customers or vendors, nor do any individual customers comprise a large
portion of the company's total revenue. Software used in accounting is not at
risk as the Company has upgraded to new software, which is already year 2000
compliant. The Company does not believe that the year 2000 presents an exposure
as it relates to the Company's key products and services.

         The year 2000 plan comprises both a remediation plan for existing
hardware and software, while the backup plan is part of a larger project to
upgrade the Company's overall business information systems. The Company has
conducted an extensive search for potential issues, which could affect the
business and potentially has included in it issues relating to the year 2000. An
assessment of our production equipment resulted in no exposure to potentially
not being able to treat medical waste. Software used in accounting is not at
risk as the Company has upgraded to new software, which is already year 2000
compliant. Company hardware is presently being tested, and adjustments are being
made to it as required. Testing plans have been designed and are being
implemented on a continuous basis for both hardware and software. The Company is
in the process of developing a compliance status from its significant vendors.

         Management of the Company believes it has an effective program in place
to resolve the year 2000 issue in a timely manner. As noted above, the Company
has not yet completed all phases of the year 2000 program. As of today, and in
event that the company does not complete any additional phases, the company
would be unable to invoice a portion of its customers.

         Disruption in the economy generally resulting from year 2000 issues
could adversely also affect the Company. The Company could be subject to
litigation or fines for equipment shutdown or failure to properly date business
records.


                                       11
<PAGE>   12


            The Company will develop contingency plans for certain critical
applications. The contingency plans involve, among other actions, manual
workarounds, increasing parts and supplies inventories, conversion to the new
business information systems, and adjusting staffing strategies.

         FROM TIME TO TIME THE COMPANY ISSUES FORWARD-LOOKING STATEMENTS
RELATING TO SUCH THINGS AS ANTICIPATED FINANCIAL PERFORMANCE, BUSINESS
PROSPECTS, ACQUISITION ACTIVITIES AND SIMILAR MATTERS.

         A VARIETY OF FACTORS COULD CAUSE THE COMPANY'S ACTUAL RESULTS AND
EXPERIENCE TO DIFFER MATERIALLY FROM THE ANTICIPATED RESULTS OR OTHER EXCEPTIONS
EXPRESSED IN THE COMPANY'S FORWARD-LOOKING STATEMENTS. THE RISKS AND
UNCERTAINTIES THAT MAY AFFECT THE COMPANY'S BUSINESS, FINANCIAL CONDITION AND
RESULTS OF OPERATION INCLUDE DIFFICULTIES AND DELAYS IN COMPLETING AND
INTEGRATING BUSINESS ACQUISITIONS; DELAYS AND DIVERSION OF ATTENTION RELATING TO
PERMITTING AND OTHER REGULATORY COMPLIANCE; DIFFICULTIES AND DELAYS RELATING TO
MARKETING AND SALES ACTIVITIES; AND GENERAL UNCERTAINTIES ACCOMPANYING THE
EXPANSION INTO NEW GEOGRAPHIC SERVICE AREAS.



                           PART II - OTHER INFORMATION


Item 1.  Legal Proceedings -

        The Company is subject to certain other litigation and claims arising in
the ordinary course of business. Management believes the amounts ultimately
payable, if any, as a result of such claims and assessments will not have a
materially adverse effect on the Company's financial position, results of
operations or net cash flows.



Item 2.  Changes in Securities - None

Item 3.  Defaults Upon Senior Securities - None

Item 4.  Submission of Matters to a Vote of Security Holders - None

Item 5.  Other Information - None

Item 6.  Exhibits and Reports on Form 8-K



                                       12
<PAGE>   13



(a)      EXHIBITS

         Except as otherwise indicated, the following documents are incorporated
         by reference as Exhibits to this Report (as used in the following
         listing, "3CI" refers to the Company):


<TABLE>
<CAPTION>
EXHIBIT
NUMBER                                   DESCRIPTION
-------                                  -----------
<S>                 <C>
2.1.                Stock Purchase Agreement dated February 4, 1995, between
                    Waste Systems, Inc. and 3CI Complete Compliance Corporation
                    (incorporated by reference to Exhibit 1.3 of 3CI's report on
                    Form 8-K filed February 7, 1994).
3.1.                Certificate of Incorporation as amended (incorporated by
                    reference to Exhibit 3(a) of 3CI's registration statement on
                    Form S-1 (No. 33-45632) effective April 14, 1992).
3.2.                Amendment to 3CI's Certificate of Incorporation as amended
                    effective June 13, 1995 (incorporated by reference to
                    Exhibit 3.1 of 3CI's Quarterly Report on Form 10-Q for the
                    quarterly period ended June 30, 1995).
3.3.                Amendment to 3CI's Certificate of Incorporation as amended
                    effective March 23, 1998 (incorporated by reference to
                    Exhibit 3.3 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.4                 Bylaws,  effective  May 14, 1995  (incorporated  by
                    reference to Exhibit 3.2 of 3CI's  Quarterly Report on Form
                    10-Q for the quarterly period ended June 30, 1995).
3.5                 Amendment of Bylaws effective October 1, 1998.
3.6.                Certificate of Designations of 3CI's Series A Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.6 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.7.                Certificate of Designations of 3CI's Series B Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.7 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.8.                Certificate of Designations of 3CI's Series C Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.8 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
4.1.                Warrant dated September 11, 1998, issued to Klein Bank as
                    escrow agent with respect to 11,061 shares of Common Stock.
4.2.                Escrow Agreement dated March 6, 1998 between 3CI and Klein
                    Bank as escrow agent (incorporated by reference to Exhibit
                    4.7 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
4.3.                First Amendment to Escrow Agreement dated as of April 22,
                    1998, between 3CI and Klein Bank.
4.4.                Amended and Restated Secured Promissory Note dated October
                    1, 1998, in the principal amount of $5,487,307.13 between
                    3CI and Waste Systems, Inc.
4.5.                Loan Agreement and Note Amendment dated December 18, 1998,
                    by 3CI and Waste Systems, Inc.
10.1.               Copy of Contract dated August 22, 1989 between 3CI and the
                    City of Carthage, Texas, related to the incineration of
                    medical waste (incorporated by reference to Exhibit 10(c) of
                    3CI's registration statement on Form S-1 (No. 33-45632)
                    effective April 14, 1992).
10.2.               Copy of Addendum dated March 30, 1992 to Contract between
                    3CI and the City of Carthage, Texas (incorporated by
                    reference to Exhibit 10 (p) of 3CI's registration statement
                    on Form S-1 (No. 33-45632) effective April 14, 1992).
10.3.               Copy of First Amendment dated July 1993 to Contract between
                    3CI and City of Carthage, Texas (incorporated by reference
                    to Exhibit 10.3 of 3CI's Annual Report on Form 10-K for the
                    fiscal year ended September 30, 1993).
</TABLE>


                                       13
<PAGE>   14


<TABLE>
<S>                 <C>
10.4.               1992 Stock Option Plan of 3CI (incorporated by reference to
                    Exhibit 10(m) of 3CI's registration statement on Form S-1
                    (No. 33-45632) effective April 14, 1992).
10.5.               Security Agreement Note dated October 10, 1994, among 3CI
                    Complete Compliance Corporation, 3CI Acquisition Corp./A/MED
                    and River Bay Corporation (incorporated by reference to
                    Exhibit 1.7 of 3CI's report on Form 8-K filed October 27,
                    1994).
10.6.               Security Agreement dated October 10, 1994, between 3CI
                    Complete Compliance Corporation and River Bay Corporation
                    (incorporated by reference to Exhibit 1.8 of 3CI's report on
                    Form 8-K filed October 27, 1994).
10.7.               Mortgage, Security Agreement, Assignment of Leases and
                    Financing Statement dated October 10, 1994, among 3CI
                    Complete Compliance Corporation, 3CI Acquisition Corp.
                    /A/MED and River Bay Corporation (incorporated by reference
                    to Exhibit 1.9 of 3CI's report on Form 8-K filed October 27,
                    1994).
10.8.               Debt Subordination Agreement dated October 10, 1994, among
                    3CI Complete Compliance Corporation, 3CI Acquisition
                    Corp./A/MED, River Bay Corporation, Marlan Baucum, Zeb
                    Baucum, III, Diedra Baucum, The Smith County Bank and the
                    Bank of Raleigh (incorporated by reference to Exhibit 1.10
                    of 3CI's report on Form 8-K filed October 27, 1994).
10.9.               Modification of Purchase Transaction dated January 25, 1995,
                    among 3CI, 3CI Acquisition Corp A/MED, River Bay Corporation
                    and Marlan Baucum (incorporated by reference to Exhibit
                    10.21 of 3CI's Annual Report on Form 10-K for the fiscal
                    year ended September 30, 1995).
10.10.              Settlement Agreement dated January 1996 between James
                    Shepherd, Michael Shepherd and Richard T. McElhannon as
                    Releassors, and the Company, Georg Rethmann, Dr. Herrmann
                    Niehues, Jurgen Thomas, Charles Crochet and Waste Systems,
                    Inc., as Releasees (incorporated by reference to Exhibit
                    10.23 of 3CI's report on Form 10-K filed January 14, 1997).
10.11.              Exchange Agreement between 3CI and Waste Systems, Inc. dated
                    as of June 24, 1997 (incorporated by reference to Exhibit
                    10.12 of 3CI's registration  statement on Form S-1 (No.
                    333-48499) filed March 24, 1998.
10.12.              Stock Purchase and Note Modification Agreement between 3CI
                    and Waste Systems, Inc. dated as of February 19, 1998
                    (incorporated by reference to Exhibit 10.13 of 3CI's
                    registration statement on Form S-1 (No. 333-48499), filed
                    March 24, 1998).
10.13.              Employment Agreement dated May 30, 1998, between 3CI and
                    Charles D. Crochet (incorporated by reference to Exhibit
                    10.9 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
10.14.              Agreement dated September 30, 1998 among 3CI, Waste Systems,
                    Inc. and Stericycle, Inc. regarding Section 203 of the
                    Delaware General Corporation Law.
10.15.              Form of Indemnification Agreement dated August 26, 1998
                    entered into between 3CI and Valerie Banner, David
                    Schoonmaker, Charles Crochet, Juergen Thomas,  Dr. Werner
                    Kook and Dr. Clemens Pues.
*11                 Statement Re:  Computation of Per Share Earnings (unaudited)
*27                 Financial Data Schedule
</TABLE>

* Filed herewith

(b) REPORTS ON FORM 8-K - None


                                       14
<PAGE>   15


                                   SIGNATURES



Pursuant to the requirements of the Securities Exchange Act of 1934, the
Registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.


                                          3CI COMPLETE COMPLIANCE
                                          CORPORATION
                                          (Registrant)

Dated:  August 13, 1999

                                          By: /s/ CHARLES D. CROCHET
                                             --------------------------------
                                                   Charles D. Crochet
                                                        President
                                               (Principal Executive Officer)


Dated:  August 13, 1999

                                          By: /s/ CURTIS W. CRANE
                                             --------------------------------
                                                  Curtis W. Crane, CPA
                                                 Chief Financial Officer,
                                                 Secretary and Treasurer
                                              (Principal Financial Officer, and
                                                Principal Accounting Officer)



                                       15
<PAGE>   16


                               INDEX TO EXHIBITS


<TABLE>
<CAPTION>
EXHIBIT
NUMBER                                   DESCRIPTION
-------                                  -----------
<S>                 <C>
2.1.                Stock Purchase Agreement dated February 4, 1995, between
                    Waste Systems, Inc. and 3CI Complete Compliance Corporation
                    (incorporated by reference to Exhibit 1.3 of 3CI's report on
                    Form 8-K filed February 7, 1994).
3.1.                Certificate of Incorporation as amended (incorporated by
                    reference to Exhibit 3(a) of 3CI's registration statement on
                    Form S-1 (No. 33-45632) effective April 14, 1992).
3.2.                Amendment to 3CI's Certificate of Incorporation as amended
                    effective June 13, 1995 (incorporated by reference to
                    Exhibit 3.1 of 3CI's Quarterly Report on Form 10-Q for the
                    quarterly period ended June 30, 1995).
3.3.                Amendment to 3CI's Certificate of Incorporation as amended
                    effective March 23, 1998 (incorporated by reference to
                    Exhibit 3.3 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.4                 Bylaws,  effective  May 14, 1995  (incorporated  by
                    reference to Exhibit 3.2 of 3CI's  Quarterly Report on Form
                    10-Q for the quarterly period ended June 30, 1995).
3.5                 Amendment of Bylaws effective October 1, 1998.
3.6.                Certificate of Designations of 3CI's Series A Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.6 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.7.                Certificate of Designations of 3CI's Series B Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.7 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
3.8.                Certificate of Designations of 3CI's Series C Preferred
                    Stock without par value (incorporated by reference to
                    Exhibit 3.8 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
4.1.                Warrant dated September 11, 1998, issued to Klein Bank as
                    escrow agent with respect to 11,061 shares of Common Stock.
4.2.                Escrow Agreement dated March 6, 1998 between 3CI and Klein
                    Bank as escrow agent (incorporated by reference to Exhibit
                    4.7 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
4.3.                First Amendment to Escrow Agreement dated as of April 22,
                    1998, between 3CI and Klein Bank.
4.4.                Amended and Restated Secured Promissory Note dated October
                    1, 1998, in the principal amount of $5,487,307.13 between
                    3CI and Waste Systems, Inc.
4.5.                Loan Agreement and Note Amendment dated December 18, 1998,
                    by 3CI and Waste Systems, Inc.
10.1.               Copy of Contract dated August 22, 1989 between 3CI and the
                    City of Carthage, Texas, related to the incineration of
                    medical waste (incorporated by reference to Exhibit 10(c) of
                    3CI's registration statement on Form S-1 (No. 33-45632)
                    effective April 14, 1992).
10.2.               Copy of Addendum dated March 30, 1992 to Contract between
                    3CI and the City of Carthage, Texas (incorporated by
                    reference to Exhibit 10 (p) of 3CI's registration statement
                    on Form S-1 (No. 33-45632) effective April 14, 1992).
10.3.               Copy of First Amendment dated July 1993 to Contract between
                    3CI and City of Carthage, Texas (incorporated by reference
                    to Exhibit 10.3 of 3CI's Annual Report on Form 10-K for the
                    fiscal year ended September 30, 1993).
</TABLE>



<PAGE>   17


<TABLE>
<S>                 <C>
10.4.               1992 Stock Option Plan of 3CI (incorporated by reference to
                    Exhibit 10(m) of 3CI's registration statement on Form S-1
                    (No. 33-45632) effective April 14, 1992).
10.5.               Security Agreement Note dated October 10, 1994, among 3CI
                    Complete Compliance Corporation, 3CI Acquisition Corp./A/MED
                    and River Bay Corporation (incorporated by reference to
                    Exhibit 1.7 of 3CI's report on Form 8-K filed October 27,
                    1994).
10.6.               Security Agreement dated October 10, 1994, between 3CI
                    Complete Compliance Corporation and River Bay Corporation
                    (incorporated by reference to Exhibit 1.8 of 3CI's report on
                    Form 8-K filed October 27, 1994).
10.7.               Mortgage, Security Agreement, Assignment of Leases and
                    Financing Statement dated October 10, 1994, among 3CI
                    Complete Compliance Corporation, 3CI Acquisition Corp.
                    /A/MED and River Bay Corporation (incorporated by reference
                    to Exhibit 1.9 of 3CI's report on Form 8-K filed October 27,
                    1994).
10.8.               Debt Subordination Agreement dated October 10, 1994, among
                    3CI Complete Compliance Corporation, 3CI Acquisition
                    Corp./A/MED, River Bay Corporation, Marlan Baucum, Zeb
                    Baucum, III, Diedra Baucum, The Smith County Bank and the
                    Bank of Raleigh (incorporated by reference to Exhibit 1.10
                    of 3CI's report on Form 8-K filed October 27, 1994).
10.9.               Modification of Purchase Transaction dated January 25, 1995,
                    among 3CI, 3CI Acquisition Corp A/MED, River Bay Corporation
                    and Marlan Baucum (incorporated by reference to Exhibit
                    10.21 of 3CI's Annual Report on Form 10-K for the fiscal
                    year ended September 30, 1995).
10.10.              Settlement Agreement dated January 1996 between James
                    Shepherd, Michael Shepherd and Richard T. McElhannon as
                    Releassors, and the Company, Georg Rethmann, Dr. Herrmann
                    Niehues, Jurgen Thomas, Charles Crochet and Waste Systems,
                    Inc., as Releasees (incorporated by reference to Exhibit
                    10.23 of 3CI's report on Form 10-K filed January 14, 1997).
10.11.              Exchange Agreement between 3CI and Waste Systems, Inc. dated
                    as of June 24, 1997 (incorporated by reference to Exhibit
                    10.12 of 3CI's registration  statement on Form S-1 (No.
                    333-48499) filed March 24, 1998.
10.12.              Stock Purchase and Note Modification Agreement between 3CI
                    and Waste Systems, Inc. dated as of February 19, 1998
                    (incorporated by reference to Exhibit 10.13 of 3CI's
                    registration statement on Form S-1 (No. 333-48499), filed
                    March 24, 1998).
10.13.              Employment Agreement dated May 30, 1998, between 3CI and
                    Charles D. Crochet (incorporated by reference to Exhibit
                    10.9 of 3CI's registration statement on Form S-1 (No.
                    333-48499), filed March 24, 1998).
10.14.              Agreement dated September 30, 1998 among 3CI, Waste Systems,
                    Inc. and Stericycle, Inc. regarding Section 203 of the
                    Delaware General Corporation Law.
10.15.              Form of Indemnification Agreement dated August 26, 1998
                    entered into between 3CI and Valerie Banner, David
                    Schoonmaker, Charles Crochet, Juergen Thomas,  Dr. Werner
                    Kook and Dr. Clemens Pues.
*11                 Statement Re:  Computation of Per Share Earnings (unaudited)
*27                 Financial Data Schedule
</TABLE>

* Filed herewith