# Patent

## Title
Oligosaccharide conjugates and methods of use

## Abstract

There is provided a method of detecting in a sample the presence of an anti-M and/or anti-A and/or anti-C/Y antibody, the method comprising contacting the sample with a diagnostic conjugate provided according to the invention, comprising an oligosaccharide which comprises at least two units of 4,6-dideoxy-4-acylamido-α-pyranose and comprising at least one -(1-3)-link between adjacent 4,6-dideoxy-4-acylamido-α-pyranose units, in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom, the oligosaccharide being covalently linked to a non-saccharide molecule or to a surface.

## Background
FIELD OF THE INVENTION
The invention relates to a novel diagnostic conjugate comprising an oligosaccharide, which can be used within assays for the reliable diagnosis of brucellosis. Furthermore, these assays can provide a DIVA (Differentiating Infected from Vaccinated Animals) test for vaccination with a novel vaccination conjugate also disclosed herein.
BACKGROUND
Brucellosis is a serious transboundary global zoonosis that is spread by livestock and wildlife and is primarily due to infection with Brucella abortus, B. melitensis or B. suis. Although the disease is serious in humans, human to human transmission is rare and nearly all cases of disease are due to contact with infected animals or animal products (Franco et al. (2007) The Lancet Infectious Diseases 7, 775-786). Brucellosis (with the exception of canine brucellosis) is caused by infection with smooth strains of Brucella, those that present O-polysaccharide (OPS) as part of the smooth lipopolysaccharide (sLPS) on their outer membrane (Cardoso et al. (2006) Microbial Cell Factories 5, 13).
The sLPS is a macromolecule comprising lipid A with a diaminoglucose backbone attached to a set of core sugars which, in the case of smooth Brucella strains, is attached to the OPS which extends into the extracellular environment. This OPS is a recognised and established virulence factor (Porte et al. (2003) Infection and Immunity 71, 1481-1490) and induces a strong antibody response in the host against which classical and contemporary serodiagnostic assays are directed (Nielsen & Yu (2010) Prilozi 31, 65-89). Unfortunately, infection with other Gram negative bacteria having OPS of similar structure, but which may be phylogenetically unrelated, may give rise to antibodies which cross react in the classical and contemporary serodiagnostic assays (Corbel (1985) Vet. Bull. 55, 927-942). Such false positive serological reactions (FPSRs) become particularly problematic in regions of low to zero prevalence of brucellosis, whereby the positive predictive value of the serological assays becomes extremely small.
Attempts to improve the specificity of brucellosis serodiagnosis have revolved mainly around efforts to identify and apply recombinant protein antigens. Whilst many studies have been published extolling the virtues of one antigen or another for the resolution of false positives, none have made it into assays that have progressed beyond the research laboratory into routine and effective use.
Antibodies raised owing to infection with Yersinia enterocolitica O:9 cross react significantly with the OPS from Brucella smooth strains, owing to the considerable similarity in the structure (McGiven et al. (2008) Journal of Immunological Methods 337, 7-15) and are believed to cause many of the false positive serological reactions in diagnostic testing (Gerbier et al. (1997) Vet Res 28, 375-383). Likewise, antibodies raised against the OPS from smooth Brucella strains show considerable reaction against Y. enterocolitica O:9 OPS (Jungersen et al. (2006) Epidemiol Infect 134, 347-357).
The Brucella OPS is an unbranched variable length homopolymer formed by, on average, 50-100 units of the rare sugar 4,6-dideoxy-4-formamido-D-mannopyranose (N-formyl perosamine) (Meikle et al. (1989) Infect Immun. 57, 2820-2828). The 4,6-dideoxy-4-formamido-D-mannopyranose unit itself is only found in nature within the OPS structure of Brucella organisms and of Y. enterocolitica O:9. In almost all Brucella organisms, neighbouring 4,6-dideoxy-4-formamido-D-mannopyranose units are variably α-1,2 or α-1,3 linked. The structural data demonstrates that it is only the α-1,3 linkage which differentiates Brucella and Y. enterocolitica O:9 OPS, as the latter is an exclusively α-1,2 linked 4,6-dideoxy-4-formamido-D-mannopyranose homopolymer (Caroff et al. (1984) Eur. J. Biochem. 139, 195-200). Between Brucella strains, the proportion of α-1,3 linkages varies between 2-20% (Meikle et al. (1989) Infect. Immun. 57, 2820-2828).
Even in Brucella strains with as much as 20% α-1,3 linkages, the OPS will contain many contiguous α-1,2 linkages (Bundle et al. (1987) Biochemistry 26, 8717-8726) It is not known, however, if the sequence of linkages is ordered and regular. There are three main biosynthesis pathways for OPS, the Wzx/Wzy, ABC (Wzm/Wzt) and Synthase systems (Wang et al. (2010) In “Endotoxins: structure, function & recognition”; Springer Netherlands, pp. 123-152). Brucella utilises the ABC system (Gonzalez et al. (2008) PLoS ONE 3, e2760), as is more commonly found in organisms that have homopolymeric OPS (including Y. enterocolitica O:9). In this pathway the saccharides are added to the growing OPS chain individually rather than being constructed into repeating units and then added, as is the case in the Wzx/Wzy pathway where OPS is frequently made up of repeating blocks of three to five different monosaccharides. As such, it is quite possible that there is no regularity to the location of the α-1,3 links and they are distributed stochastically with regions of extended contiguous α-1,2 linkages even in strains with a relatively high proportion of α-1,3 linkages. The control and fidelity of the enzymes that synthesise the OPS have yet to be established.
The proportion of the two linkage types affects the shape of the OPS and the different shapes are recognisable by monoclonal (Douglas et al. (1988) J Clin Microbiol 26, 1353-1356) and polyclonal antibodies such as those used for serotyping Brucella into A (low number of α-1,3 linkages, typically 2%) and M (relatively high proportion of α-1,3 linkages, typically 20%) dominant strains or serotypes (Alton et al. (1994) Techniques for the Brucellosis Laboratory, pages 53-54; INRA Editions, ISBN-10: 2738000428).
The B. suis biovar 2 strain (Zaccheus et al. (2013) PLoS One 8, e53941) and B. inopinata BO2 (Wattam et al. (2012) mBio 3: 00246-12) do not appear to contain any α-1,3 linkages. B. inopinata BO2 is a highly unusual and distantly related member of the Brucella genus as well as being extremely rare. Although it is a smooth strain, it is lacking most of the genes required for the synthesis of 4,6-dideoxy-4-formamido-D-mannopyranose OPS (Wattam et al (2012) mBio, 3:5). Its OPS structure is of a different form which has not yet been identified.
The relative proportions and distribution of α-1,2 and α-1,3 linkages within the Brucella and Y. enterocolitica O:9 homopolymeric OPS create distinct, but not necessarily completely described, antibody binding epitopes. In Brucella, there are three different antigenic epitopes which can be found in the OPS for which there has been firm structural evidence (Bundle et al. (1989) Infect. Immun. 57, 2829-2836) as summarised in Table 1:







TABLE 1







OPS epitopes










Name





of
Number of




epitope
perosamines
Characteristics
Present in which OPS





C/Y
3 to 4
N-formyl perosamines
All smooth Brucella




are exclusively joined
strains and also Y.




by α1,2 linkages
enterocolitica O:9


A
5 or more
N-formyl perosamines
Predominantly within all




are joined by α1,2
A-dominant Brucella




linkages
strains and also Y.





enterocolitica O:9


M
2-6
At least one α1,3 link
Predominantly within M-




present with at least
dominant OPS Brucella




one adjacent α1,2
strains but also, to a




linkages; location of
lesser extent, A-




α1,3 link within
dominant strains.




epitope undefined
Not found in Y.





enterocolitica O:9









Exclusively α-1,2 linked tri- and tetrasaccharide sequences are found in high abundance within the OPS from B. abortus, melitensis and suis as well as in the OPS from Y. enterocolitica O:9. Such sequences are termed ‘C/Y epitopes’ as they are common within all smooth strains of economically significant Brucella and also to Y. enterocolitica O:9. Monoclonal antibodies that bind such sequences are termed anti-C/Y.
Longer sequences of more than four saccharides that are exclusively α-1,2 linked are more likely to be found in Brucella strains with lower proportions of α-1,3 links. This also includes Y. enterocolitica O:9 which contains only α-1,2 links. Such sequences are termed ‘A epitopes’ and, of course, contain C/Y epitopes within them (C/Y epitopes being α-1,2 linked perosamine chains up to 4 saccharides in length, as outlined above). Monoclonal antibodies that bind such epitopes are termed anti-A antibodies. Strains of Brucella with OPS containing low proportions of α-1,3 links and, therefore, more abundant and longer sequences of uninterrupted α-1,2 links, are termed “A dominant” strains (including most strains of B. abortus), even though the OPS may contain a proportion of α-1,3 links at least once every 50 residues (Bundle et al. (1989) Infect. Immun. 57, 2829-2836). The OPS from A-dominant strains of course contains C/Y epitopes, as well as A epitopes.
An anti-C/Y antibody will be expected to bind to both a C/Y epitope and to an A-epitope, since the shorter C/Y epitope structure forms part of the longer A-epitope structure.
Sequences of saccharides that contain a single α-1,3 linkage with limited contiguous α-1,2 linkages are termed ‘M epitopes’. Monoclonal antibodies that bind to such sequences are termed anti-M antibodies. Strains of Brucella with a high proportion of α-1,3 links are termed M dominant strains. Such strains comprise C/Y epitopes, but fewer A epitopes, if any, since the series of α-1,2 linkages is “broken up” by the presence of more frequent α-1,3 linkages.
The structure of the M epitope has not been defined and, in detailed terms, may vary according to the antibody. However, any M epitope must be sufficient in size to enable the binding of monoclonal antibodies raised against antigens containing the α-1,3 linkage and be sufficiently limited in α-1,2 linkages so as not to bind effectively to antibodies raised against antigens (or parts of antigens) that are exclusively α-1,2 linked. Thus, the presence of the α-1,3 linkage is critical, as is a limitation on the number of α-1,2 linkages. The structure of these antigens has been partially described previously (Bundle et al. (1989) Infect Immun 57, 2829-2836) although the allocation of Brucella strains into A and M types (and also mixed A and M) predates this considerably. This allocation is a fundamental part of the classical biotyping of Brucella strains (Nielsen et al. (2009) “Bovine brucellosis” In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, pg 10-19). Recent work suggests that the M dominant OPS contains a repeating structural determinant that contains one α-1,3 link for every three α-1,2 links. (Kubler-Kielb & Vinogradov (2013) Carbohydr. Res. 378, 144-147).
The typing of strains into A, M or mixed A and M (where there is a proportion of α-1,2 linkages of between 2-20% (Meikle et al. (1989) Infect Immun 57, 2820-2828)) is performed using sera from hyperimmunised rabbits. The rabbits are inoculated with repeated doses of killed Brucella cells of either A or M dominant type until a high antibody titre has been obtained. The polyclonal sera is then absorbed with the heterologous cell type (e.g., sera from rabbits hyperimmunised with A dominant strains are absorbed with M dominant cells) to remove antibodies that cross react. After careful selection and empirical testing, the process leaves a population of polyclonal (now termed monospecific) antibodies that are more specific to the immunising type and can be used in agglutination assays to determine the A, M or mixed A and M status of an untyped strain (Alton et al. (1994) Techniques for the Brucellosis Laboratory, pages 53-54; INRA Editions, ISBN-10: 2738000428).
Presumptive diagnosis of Brucellosis depends on detection of antibodies to Brucella A, C/Y and M antigens and is confirmed by microbiological culture (Nielsen et al. (2009) “Bovine brucellosis” In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, pg 3-7). The A, C/Y and M antigenic determinants are expressed simultaneously on the O-antigen polysaccharide domain of Brucella smooth lipopolysaccharides (s-LPS) and this sLPS is used to detect antibodies present in sera of animals or humans suspected of being infected. Unfortunately, Brucella is a virulent pathogen that must be grown under level 3 bio-containment. This makes the production of diagnostic O-antigens a demanding, specialised and costly task, with significant health risks. Furthermore, since A, C/Y and M epitopes each may be expressed on a single Brucella sLPS and since this antigen is resistant to common partial degradation methods, it has proved difficult to isolate pure A or M antigenic determinants.
In summary, the Brucella OPS is highly immunogenic and many antibodies are raised against it in infected animals. This OPS contains a number of overlapping antibody epitopes, some of which are unique to Brucella and some that are not. The existence of non-unique epitopes within the Brucella OPS compromises its use as a serodiagnostic antigen and is a major factor in the occurrence of false positive serological results. It has previously been reported, by some workers (Alonso-Urmeneta et al. (1998) Clinical and Diagnostic Laboratory Immunology 5, 749-754), that antibodies to common OPS epitopes dominate the humoral response in cases of animal brucellosis and that the epitopic structure of the LPS, be it A, M or mixed A and M dominance, is not relevant in serodiagnosis.
However, given the problems of cross-reactivity of antibodies raised against different strains of Brucella, as well as other organisms, there is a need to identify antigens and methods capable of discriminating between antibodies raised against a Brucella bacterium and those raised against other organisms.
SUMMARY OF INVENTION
According to a first aspect of the invention, there is provided a method of detecting in a sample the presence of anti-M and/or anti-C/Y and/or anti-A antibodies, for example anti-O-polysaccharide antibodies such as anti-Brucella and/or anti-Y. enterocolitica O:9 antibodies, the method comprising contacting the sample with a diagnostic conjugate as defined below according to the second aspect (or third or fourth aspects) of the invention. The method may comprise detecting binding of the conjugate to at least one antibody present in the sample. In an embodiment, the diagnostic conjugate for use in the first aspect of the invention may be a “universal antigen” for anti-M and anti-C/Y and anti-A antibodies, as described below. The diagnostic conjugate comprises an oligosaccharide which comprises at least two 4,6-dideoxy-4-acylamido-α-pyranose units and comprises at least one -(1-3)- link between adjacent 4,6-dideoxy-4-acylamido-α-pyranose units, the oligosaccharide being covalently linked to a non-saccharide carrier molecule or to a solid entity.
In an embodiment, there is provided a method of detecting in a sample the presence of anti-M antibodies, for example anti-OPS antibodies such as anti-Brucella antibodies, the method comprising contacting the sample with a diagnostic conjugate as defined below according to the second aspect (or third or fourth aspects) of the invention and detecting binding of the conjugate to at least one anti-M antibody present in the sample. The diagnostic conjugate for use in this embodiment of the invention is a “specific M-antigen”, as described below, capable of distinguishing between an anti-A (and/or anti-C/Y) antibody and an anti-M antibody. That is, the specific M-antigen diagnostic conjugate binds preferentially (i.e., with greater specificity) to anti-M antibodies as compared to anti-A (and/or anti-C/Y) antibodies. This embodiment of the method, therefore, may provide a method for detecting the presence in a sample of anti-Brucella antibodies whilst avoiding detection of antibodies against a non-Brucella organism. The inventors have observed an unexpected specificity within the polyclonal antibody response, in the vast majority of Brucella infected animals, to the α-1,3 linkage, the presence of which structurally differentiates most strains of Brucella from Y. enterocolitica O:9 OPS. Given the very low number of α-1,3 links in the OPS of the majority of Brucella, it is completely surprising that the method of the invention is effective in detecting the presence of antibodies raised against almost all strains of Brucella. 
Detection of binding of the diagnostic conjugate to an antibody, as mentioned herein, may be by any known technique, for example, an ELISA, fluorescence polarisation assay (FPA), TR-FRET assay, lateral flow assay or bead-based agglutination assay, as described in more detail below. The invention is not limited to any of these assays and the skilled person may readily contemplate alternative assays which might be used.
An anti-M antibody is one which is capable of binding to an M-epitope from a Brucella OPS or to an M-dominant antigen. An anti-A antibody is one which is capable of binding to an antigen comprising an A-epitope, or to an A-dominant antigen, as found in the Brucella OPS or the Y. enterocolitica O:9 OPS. An anti-C/Y antibody is one which is capable of binding to an antigen comprising a C/Y epitope, as found in the Brucella OPS or the Y. enterocolitica O:9 OPS. This epitope may, in some occurrences, be found within an A- or an M-dominant antigen. An anti-M antibody may preferentially bind to an antigen comprising an M-epitope compared to binding of the antibody to an antigen comprising an A or C/Y epitope (i.e., it will bind with greater specificity to an antigen comprising an M-epitope). Examples of such epitopes, antibodies and antigens are known in the art, as described above. Examples of anti-M antibodies include BM40 (Greiser et al. (1987) Am. Inst. Pasteur Microbiol. 138, 549-560), BM28 or BM10 (Bundle et al. (1989) Infect. Immun. 57, 2829-2836). Examples of anti-A antibodies include YsT9.1 and YsT9.2 (Bundle et al. (1989) Infect. Immun. 57, 2829-2836).
According to a second aspect of the invention, there is provided a diagnostic conjugate comprising an oligosaccharide which comprises at least two 4,6-dideoxy-4-acylamido-α-pyranose units and comprising at least one -(1-3)- link between adjacent 4,6-dideoxy-4-acylamido-α-pyranose units, the oligosaccharide being covalently linked to a non-saccharide carrier molecule or to a solid entity, such as a surface or a bead (encompassing, for example, any non-liquid structure such as a gel or latex bead or surface).
The diagnostic conjugate described herein may prove useful in the detection of antibodies to the A, C/Y and M epitopes described herein and, in some embodiments, for distinguishing between antibodies to the A or C/Y and M epitopes. Therefore, the diagnostic conjugate may be termed a “diagnostic antigen”.
The oligosaccharide may comprise 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 4,6-dideoxy-4-acylamido-α-pyranose units.
A “specific M-antigen”, as mentioned throughout this specification, may be provided where the diagnostic conjugate of the invention comprises an oligosaccharide comprising 2, 3, 4 or 5 4,6-dideoxy-4-acylamido-α-pyranose units. A “universal antigen” for anti-M and anti-A antibodies, as mentioned throughout this specification, may be provided where the diagnostic conjugate of the invention comprises an oligosaccharide comprising 6 or more 4,6-dideoxy-4-acylamido-α-pyranose units. These specific embodiments of the diagnostic conjugate are described further elsewhere herein.
The term “-(1-3)- link” as used throughout this specification indicates an α-1,3 link (also known as an α-1>3 link) between adjacent 4,6-dideoxy-4-acylamido-α-pyranose units in the oligosaccharide. Likewise, the term “-(1-2)- link” as used throughout this specification indicates an α-1,2 link (also known as an α-1>2 link) between adjacent 4,6-di deoxy-4-acylamido-α-pyranose units.
The at least one -(1-3)- link may be centrally positioned, as defined below. Where four or more 4,6-dideoxy-4-acylamido-α-pyranose units are present, the at least one -(1-3)- link may be internally positioned and optionally also centrally positioned, as defined below.
The term “internally positioned -(1-3)- link” indicates that the -(1-3)- link is not the final link at either end of the molecule, that is, it is positioned between 4,6-dideoxy-4-acylamido-α-pyranose units neither of which forms a terminal unit of the oligosaccharide.
The term “centrally positioned -(1-3)- link” in the context of an oligosaccharide having an even number of 4,6-dideoxy-4-acylamido-α-pyranose units indicates that the -(1-3)- link is in the central position of the molecule with an equal number of 4,6-dideoxy-4-acylamido-α-pyranose units to either side. In the context of an oligosaccharide having an odd number of 4,6-dideoxy-4-acylamido-α-pyranose units, the term “centrally positioned -(1-3)- link” indicates that the -(1-3)- link is positioned immediately to one side of the 4,6-dideoxy-4-acylamido-α-pyranose unit which is in the middle of the molecule, i.e., the unit which has an equal number of other units to either side of it. For example, in a trisaccharide the central unit is the second unit and the centrally positioned -(1-3)- link is the first link (between units one and two) or the second link (between units two and three); in a pentasaccharide the central unit is the third unit and the centrally positioned -(1-3)- link is the second link (between units two and three) or the third link (between units three and four).
In an embodiment, the oligosaccharide forming part of the diagnostic conjugate has no more than one -(1-3)- link, i.e., there is a single -(1-3)- link present in the oligosaccharide, with all other links between 4,6-dideoxy-4-acylamido-α-pyranose units being a link which is not an α-1,3 link, for example, which is an α-1,2 link.
Throughout this specification, the term “pyranose” indicates a sugar (for example, a pentose or hexose) comprising a pyran ring. In any aspect or embodiment of the present invention, the C5 (carbon at position 5 in the pyranose) in each 4,6-dideoxy-4-acylamido-α-pyranose unit is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C. The “independent selection” of the R group indicates that it may be different in each 4,6-dideoxy-4-acylamido-α-pyranose contained in the oligosaccharide. In some embodiments, the alkyl group may be a hydrocarbon having 1-5 C atoms, for example, 1, 2, 3, 4 or 5 C atoms.
In any aspect or embodiment of the invention, the alkyl group may be a saturated hydrocarbon which is branched or unbranched. The alkyl group may be a methyl, ethyl, propyl, butyl or pentyl group, for example. In an embodiment, R is methyl.
In any aspect or embodiment of the invention, the acylamido in each 4,6-dideoxy-4-acylamido-α-pyranose unit may be independently selected from formamido, acetamido, propionamido or butyramido, i.e., each acylamido present in the overall molecule may be any of formamido, acetamido, propionamido or butyramido, so that a mixture of groups may be present in the oligosaccharide. In any embodiment, 4,6-di deoxy-4-acyl amido-α-pyranose may be 4,6-di deoxy-4-formamido-α-D-mannopyranose.
In any embodiment of the oligosaccharide described herein, in any aspect of the invention, the reducing end of the oligosaccharide may be closed by an —OCH3 group, formed by substitution by —CH3 of the —H on the —OH moiety which is linked to C1 (carbon at position 1) on the pyranose ring. The reducing end may alternatively be “closed” with a -1-O—(CH2)n—COO—CH3 group where n=3-9, which may enable linkage to protein and/or non-protein molecules and/or to a solid entity. In a further alternative, a non-perosamine sugar may be attached at any suitable position to the oligosaccharide defined herein, optionally for the purpose of linkage to other molecules. Other linking systems are described below.
The oligosaccharide covalently linked to form part of the diagnostic conjugate may be a disaccharide having Formula I;

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula I).

In an embodiment, the disaccharide consists of Formula II:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranose  (Formula II).

The oligosaccharide may be a trisaccharide having Formula III or IV:

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula III);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula IV).

The oligosaccharide may be a tetrasaccharide having Formula V, VI or VII:

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula V);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl  (Formula VI);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula VII).

In an embodiment of Formula VII, the tetrasaccharide consists of Formula VIII:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (Formula VIII)

In an embodiment, the oligosaccharide is a pentasaccharide of Formula IX, X, XI or XII:

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose   (Formula IX);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranose   (Formula X);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose   (Formula XI);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose   (Formula XII).

By way of example, in both Formulae XI and XII above, a link which is not an internally positioned link is shown in bold. It can be seen, therefore, that the -(1-3)-link in each of these molecules is internally positioned. In addition, in both Formulae, the central 4,6-dideoxy-4-acylamido-α-pyranose unit is underlined, showing that that the -(1-3)- link in these molecules is also centrally positioned, according to the above definition.
Any of the oligosaccharides of Formulae I-XII may be covalently linked to a non-saccharide molecule or to a solid entity, to form a diagnostic conjugate which may be a specific M-antigen. The inventors found that anti-Brucella OPS antibodies raised by infection with non-Brucella organisms did not bind effectively to a diagnostic conjugate comprising the disaccharide, trisaccharide, tetrasaccharide and pentasaccharide described above. In light of this, the inventors' finding that polyclonal antibodies raised against A dominant as well as M dominant strains of Brucella can bind to a diagnostic conjugate comprising the disaccharide, trisaccharide, tetrasaccharide and pentasaccharide described above was very surprising. This is surprising because A dominant Brucella strains have few M epitopes in the OPS. This interaction is of sufficiently high specificity that antibodies that cross react with the native OPS, but have not been raised against Brucella, fail to bind these oligosaccharides effectively, if at all. Binding specificity is apparently greatest when no or few contiguous -(1-2)- links are present in the oligosaccharide.
The oligosaccharide may be a hexasaccharide having Formula XIII or XIV:

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula XIII);

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula XIV).

The -(1-3)- link is internally positioned in these molecules, as defined above.
In an embodiment of the invention, the oligosaccharide may be a nonasaccharide having Formula XV:

4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-di deoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose  (Formula XV).

Any of the oligosaccharides having Formulae XIII-XV are covalently linked to a non-saccharide molecule or to a solid entity, to form a diagnostic conjugate which may be a universal antigen, especially when the conjugate comprises the oligosaccharide of Formula XIV or XV.
The term “covalently linked” as used herein indicates that the oligosaccharide is joined to the non-saccharide molecule or solid entity via a link or bridge which comprises at least one covalent bond. Therefore, the term “conjugate” or “diagnostic conjugate” as used herein refers to a structure comprising an oligosaccharide that has been covalently linked or coupled to a “carrier” entity which is a non-oligosaccharide molecule such as (i) a protein or other molecule, for example one with a known biological activity such as the ability to fluoresce, or (ii) an inert amphiphilic polymer, or (iii) a solid material entity such as a surface or a bead. In all three cases, the coupling allows for various assay formats that detect the presence of antibody in a sample, for example, ELISA, FPA, TR-FRET, lateral flow assay or bead-based agglutination assay, as outlined elsewhere herein. The oligosaccharide may be conjugated through the glycosidic oxygen atom or a sulfur atom. The covalent coupling may be directly to the protein, molecule, polymer or solid entity, or may be achieved via covalent coupling to a linker as described below.
In the case of the conjugates described herein, the oligosaccharide is covalently attached through a linker to a carrier entity such as a protein carrier, polymer or solid entity such as a surface, using chemical techniques providing for linkage of the oligosaccharide to the said carrier. The linker may form a direct bridge between the oligosaccharide and the carrier, or may be attached directly to the oligosaccharide and then be attached to the carrier via a coupling reagent, as outlined further below. In one embodiment, reaction chemistries are used that result in covalent linkages between the linker and the carrier, as well as between the linker and the oligosaccharide. Such chemistries can involve direct attachment of the oligosaccharide-linker entity to the carrier, or attachment of the oligosaccharide-linker entity to a coupling reagent which itself attaches to the carrier. For example, this may comprise the use of complementary functional groups on hetero- or homo-bifunctional cross-coupling reagents, described further below. Preferably, the complementary functional groups are selected relative to the functional groups available on the oligosaccharide and/or carrier for bonding, or which can be introduced onto the oligosaccharide and/or carrier for bonding.
Either of two approaches can be adopted for attachment of a linker to the oligosaccharide. The first, as taught in (Lemieux et al. (1975) J. Am. Chem. Soc. 97, 4076-4083), assembles oligosaccharide on a linker. When the oligosaccharide-linker has been assembled, groups superfluous to further use, that were used to protect the oligosaccharide during assembly, are removed from the completed oligosaccharide-linker construct and the linker is activated for covalent attachment to protein (for example, to form an acyl azide group as shown in row 2 of Table 2). The second approach attaches the linker to the completed oligosaccharide after synthesis (Ogawa et al. (1996) Carbohydr. Res. 293, 173-94) and then removes protecting groups prior to conjugation with protein. In the first approach, the functionality used to establish the linkage to protein, either latent or exposed, must survive all chemical transformation used to build and subsequently deprotect the oligosaccharide. In the second approach, the linker only has to survive the deprotection step(s). In the work described herein, the inventors employed the first method and preserved the ester functionality throughout oligosaccharide synthesis and removal of protecting groups.
The term “linker” or “linking group” refers to the bridge structure produced between the oligosaccharide and the carrier, after covalent bonding of a linking agent, homobifunctional cross coupling reagent, or heterobifunctional cross coupling reagent to the oligosaccharide and to the carrier, as described below.
Suitable complementary functional groups for use in forming covalent linkages are well known in the art. By way of example, reaction between a carboxylic acid of either the linker or the protein carrier and a primary or secondary amine of the protein carrier or the linker in the presence of suitable, well-known activating agents results in formation of an amide bond; reaction between an amine group of either the linker or the protein carrier and a sulfonyl halide of the protein carrier or the linker results in formation of a sulfonamide bond covalently; and reaction between an alcohol or phenol group of either the linker or the protein carrier and an alkyl or aryl halide of the carrier or the linker results in formation of an ether bond covalently linking the carrier to the linker. Similarly, these complimentary reactions can occur between the linker and the oligosaccharide to form a linkage between the oligosaccharide and the linker.
The following Table 2 illustrates numerous complementary reactive groups and the resulting bonds formed by reactions between them.







TABLE 2







Complementary Reactive Groups and Resulting Linkages









First reactive group
Second reactive group
Resulting linkage





squarate
amine
Amide type


acyl azide
amine
Amide


carboxyl
amine
Amide


ketone
aminooxy
oxime


thiol
bromo or iodoacetyl
thioether


carbonate
amine
Carbamate


epoxide
sulfhydryl
β-hydroxythioether


maleimide
sulfhydryl
Thioether


hydroxyl
alkyl/aryl halide
Ether


amine
epoxide
β-hydroxyamine


amine
ketone
Imine


amine
ketone
secondary amine


sulfonyl halide
amine
Sulfonamide


epoxide
alcohol
β-hydroxyether


hydroxyl
isocyanate
urethane









The term “linking agent” refers to a reagent that is used to couple two other molecules or species together. Thus, linking agents include heterobifunctional cross coupling reagents and homobifunctional cross coupling reagents. In one embodiment, the linking agent comprises a functional group selected from the “first reactive group” in Table 2. In another embodiment, the linking agent comprises a functional group selected from the “second reactive group” in Table 2. For example, a linking agent can comprise a functional group selected from the “first reactive group” in Table 2 while a mannopyranose derivative can comprise a functional group selected from the “second reactive group” in Table 2, or vice versa.
The term “heterobifunctional cross coupling reagents” refers to a reagent that is used to couple two other molecules or species together by having at least two different functional groups built into one reagent. Such cross coupling reagents are well known in the art and include, for example, X-Q-X′, where each of X and X′ are preferably independently cross coupling groups selected, for example, from —OH, —CO2H, epoxide, —SH, —N═C═S, and the like. Preferably, Q is a group covalently coupling X and X′ having from about 1 to about 20 atoms or alternatively, can be from about 1 to about 15 carbon atoms. Examples of suitable heterobifunctional cross coupling reagents include N-ε-maleimidocaproic acid, m-maleimidobenzoyl-N-hydroxysuccinimide ester, 3-(2-pyridyldithio)propionylhydrazide, N-succinimidyl iodoacetate, NHS-PEG-maliemide and N-succinimidyl 3-(2-pyridyldithio) propionate. The heterobifunctional cross coupling reagents may also be a lipid or lipid mimic, where the carbohydrate hapten may be covalently linked to the lipid or the lipid is co-administered as an immunological adjuvant.
The term “homobifunctional cross coupling reagents” refers to a reagent that is used to couple two other molecules or species together by having at least two of the same functional groups built into one reagent. Such cross coupling reagents are well known in the art and include, for example, X-Q-X, where X and Q are as defined above. Examples of suitable homobifunctional cross coupling reagents include squarate derivatives, as well as entities derived from succinic anhydride, maleic anhydride, polyoxyalkylenes, adipic acid (CO2H—C6—CO2H), and azelaic acid (CO2H—C9—CO2H). 1,2-diaminoethane, a dicarboxylic acid chloride and diethyl squarate are particular examples of such homobifunctional cross coupling reagents. Homobifunctional cross coupling reagents may also be derived from lipids and lipid mimics.
A preferred embodiment employs the heterobifunctional 5-methoxycarbonylpentanol as linker. The oligosaccharide is synthesised by attaching one or more sugar units via an alpha linkage to the hydroxyl group of the linker. The linker is chosen such that its second functional group remains unchanged throughout the chain extension of the oligosaccharide. Close variants of this linker type are alkanes bearing a terminal alcohol and a terminal ester group composed of 4 to 10 carbon atoms, or di or triethylene glycols bearing a terminal alcohol and a terminal ester group.
After removal of protecting group from the sugar residues and introduction of crucial formamido functionalities, the linker ester is converted to an amide which is conjugated to protein or polymer with primary amino group using a homobifunctional coupling reagent, di-alkyl squarate.
Other methods are known to practitioners of the art. For example (as taught by Lemieux) the linker ester may be converted to an acyl hydrazide and, by reaction with nitrous acid or dinitrogen tetroxide, a highly reactive acyl azide species is produced. Without isolation, this rapidly conjugates with protein or polymer primary amino groups. Less useful are methods whereby the linker ester under goes reaction to yield an aldehyde which may be conjugated by reductive amination. Methods of this type are less effective, because the chemistry to convert the ester group to appropriate functionalities may be incompatible with functional groups present in the oligosaccharide.
By way of non-limiting example, as in the work exemplified herein, the oligosaccharide may be linked to Bovine Serum Albumin (BSA) (or co-povidone) by being synthesised with a 5-methoxycarbonylpentanol linker molecule, the other end of which is reacted with a dialkyl squarate coupling reagent to provide a squarate half ester, which forms amide bonds to amino groups present in the BSA protein (or co-povidone).
In the conjugate according to the invention, the oligosaccharide is covalently attached as described above to a carrier, for example, a non-oligosaccharide entity such as a protein, for example, Bovine Serum Albumin (BSA), to a non-protein carrier molecule comprising hydrophobic elements, or to a fluorophore to enable detection in, for example, a TR-FRET or FPA system. The oligosaccharide may be covalently attached to a carrier which is a solid entity such as a surface and/or a membrane and/or a bead, by way of non-limiting example. A “solid” bead encompasses non-liquid structures such as gel beads or latex beads. Therefore, the diagnostic conjugate may be in the form of a surface having at least one oligosaccharide as described herein attached thereto via a linking system which includes a covalent attachment to the oligosaccharide. Attachment may be, for example, via passive absorption mediated by a protein carrier, or a non-protein carrier molecule comprising hydrophobic elements, covalently attached to the oligosaccharide. The passive absorption being due to, for example, hydrophobic and ionic interactions with a surface such as polystyrene, polyvinyl chloride, latex, glass, nitrocellulose, polyvinylidene difluoride. The protein carrier may be, for example, BSA. The attachment may alternatively be via hydrazone conjugation, which includes providing aldehyde groups on the oligosaccharide by periodate oxidation. Where hydrazone conjugation is used, the surface may be a Carbo-BINDTM ELISA plate. Other functional groups available on the solid entity surface may also be utilised, such as maleimide (binds to sulfhydryls), amine (numerous binding options available through use of a linker, as outlined in Table 2), aldehydes (bind to amines), or carboxyl (bind to amines).
The diagnostic conjugate described herein may be a synthetic conjugate, for example, the oligosaccharide and conjugate being synthesised by methods such as those outlined below.
In the method according to the invention, the sample may be a biological sample obtained from an animal, for example, an animal which is or has been, or is suspected of being or having been, infected with a Brucella bacterium. The animal may be a ruminant, camelid or suid animal such as a bovine or swine animal, for example, a cow, pig, sheep or goat, or may be a human being. The biological sample may be a blood, plasma, serum, tissue, saliva or milk sample. In particular, a biological sample is not a laboratory sample comprising only antibodies and/or oligosaccharides (plus laboratory reagents), but is a complex sample also comprising many other components including other antibodies, unrelated to the method to be conducted. The presence of anti-M antibodies in a sample from an animal indicates that the animal is, or has previously been, infected with a smooth strain Brucella bacterium so as to elicit an immune response and raising of antibodies. The Brucella may be any smooth strain (those that present OPS on their surface) which is not B. suis biovar 2 or B. inopinata BO2.
The method may take the form of an ELISA assay, for example an indirect ELISA or a competitive ELISA, the design of which is within the routine ability of the skilled person. For example, in an indirect ELISA, the oligosaccharide described herein is immobilised on an ELISA plate to form a diagnostic conjugate according to the invention, for example via hydrazone binding to a Carbo-BINDTM plate as described herein, or to a non-functionalised ELISA plate via the use of a conjugated carrier molecule such as BSA, capable of passive absorption to the plate. The biological sample to be tested is then added to the plate and incubated for a period of time, after which the plate is washed. A detection conjugate (such as HRP-conjugated Protein-G) is added and the plate incubated, washed and subsequently developed by a method appropriate to the detection conjugate being used (in the case of HRP, ABTS may be suitable, as described below). This allows determination of the level of binding, if any, of antibodies present in the biological sample to the oligosaccharide present on the plate. Specific examples are described in detail below.
In a competitive ELISA, the oligosaccharide may be immobilised on an ELISA plate to form a diagnostic conjugate according to the invention, for example, via hydrazone binding to a Carbo-BINDTM plate as described herein, or to a non-functionalised ELISA plate via the use of a conjugated carrier molecule such as BSA, capable of passive absorption to the plate. The biological sample to be tested is then added to the plate in conjunction with an anti-M monoclonal antibody (such as the BM40 antibody) and incubated for a period of time, after which the plate is washed. Binding of the anti-M monoclonal antibody is then detected by the addition to the plate of a suitable enzyme conjugate that specifically binds to the anti-M monoclonal antibody and a further incubation, after which time the plate is washed. (If the anti-M antibody has already been enzyme labelled, for example with HRP, the additional conjugate and incubation step would not be required.) The plate is subsequently developed by a method appropriate to the conjugate being used (in the case of HRP, ABTS may be suitable, as described below). This allows determination of the level of binding of the anti-M monoclonal antibody. Any anti-M antibodies in the sample will compete with the monoclonal anti-M antibody for binding to the immobilised antigen, resulting in a reduction of assay signal. This is used as a measure of the presence of anti-M antibodies in the biological sample.
Other ELISA variants, such as a blocking ELISA (Rhodes et al. (1989) J. Vet. Diagn. Invest. 1, 324-328), are well known to the skilled person and may be utilised without application of inventive skill.
The method according to the invention may comprise use of TR-FRET methods, such as are described, for example, in WO2009/118570 and WO2011/030168. In this context, the ongosaccharides may be conjugated, directly or indirectly, to a TR-FRET label such as a lanthanide chelate (donor fluorophore) or fluorescein (acceptor fluorophore) as described in those patent publications.
As mentioned above, the oligosaccharides may also be conjugated, directly or indirectly, to fluorophores that will enable the detection of antigen-antibody binding by fluorescence polarisation (Nasir and Jolley (1999) Comb. Chem. High Throughput Screen., 2, 177-190) as described, for example, in U.S. Pat. No. 5,976,820. This forms the basis of a fluorescence polarisation assay (FPA) as referred to elsewhere herein.
By way of non-limiting example, other assay formats which may be utilised in the invention include a lateral flow assay, in which antigen is absorbed to a membrane along which a serum (comprising serum antibodies) may be caused to flow. The serum may be mixed with anti-species antibodies, labelled with colloidal gold or latex beads (Abdoel et al. (2008) Vet. Microbiol. 130, 312-319). A further alternative is a bead based agglutination assay, for example in which an antigen-BSA conjugate is passively coated to a latex bead. The bead is then added to a serum sample and the occurrence or absence of agglutination observed (indicating antibody binding to antigen on the bead) (Abdoel & Smiths (2007) Diagn. Microbiol. Infect. Dis. 57, 123-128).
The method may be a diagnostic method of determining that an animal is or has been infected with a Brucella organism, the method comprising contacting a biological sample previously obtained from the animal with a diagnostic conjugate according to the second aspect (and/or third and/or fourth aspects, described below) of the invention. The animal may be a human being or a cow, pig, sheep or goat. The biological sample may be a blood, plasma, serum, tissue, saliva or milk sample.
Also provided is the diagnostic conjugate according to the second aspect of the invention for use in a diagnostic method of determining that an animal is or has been infected with a Brucella organism, as outlined above.
The methods described herein utilise the diagnostic conjugate also described herein and provide, for the first time, a method for detection of anti-A and/or anti-C/Y and/or anti-M antibodies, for example anti-OPS antibodies such as anti-Brucella antibodies, using a synthetic antigen. As mentioned above, since Brucella must be grown under level 3 bio-containment, production of diagnostic O-antigens is a demanding, specialised and costly task. Provision of a synthetic antigen is, therefore, a significant advantage. The data presented herein show that chemical syntheses have successfully provided a universal antigen to detect Brucella antibodies that arise during infection by all Brucella strains producing a sLPS (as well as other bacteria with an antigen having “A” epitope characteristics). This provides an extremely valuable and convenient antigen for presumptive diagnosis and one that can be deployed in virtually any assay format, including those that do not require sophisticated equipment, unavailable in remote locations (Martinez et al. (2007) Proc. Natl. Acad. Sci. 105, 19606-19611).
Furthermore, the provision in some embodiments of the present invention of a specific M-antigen, capable of preferentially binding to anti-M antibodies, provides for the first time a method enabling detection of antibodies against a Brucella bacterium whilst avoiding detection of antibodies against a non-Brucella organism (such as a Gram-negative organism in possession of an OPS of highly similar structure to that of Brucella, such as Y. enterolitica O:9). Therefore, in the method of the invention, the proportion of such false positive results due to detection of infection by such a non-Brucella bacterium is significantly reduced compared to a serodiagnostic assay method not according to the invention, e.g., as described in Nielsen et al. (“Bovine brucellosis” In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, pg 10-19). In this context, the Brucella bacterium may be a B. abortus, B. melitensis or B. suis (with the exception of strains of B. suis biovar 2) bacterium. The presence of antibodies to B. suis biovar 2 or B. inopinata BO2 may not be detected using this embodiment of the method, as outlined above. The utility of the diagnostic conjugates disclosed herein, which are a specific M-antigen, for detection of almost all smooth strains of Brucella, both A-dominant and M-dominant strains, is a completely unexpected result, due to the low occurrence of the M-epitope in A-dominant strains.
In any case, the application of a discrete, isolated, M epitope (i.e., a specific M-antigen as described herein) for use in diagnosis has not previously been proposed. This is because the epitope has not previously been clearly defined, has been reported as having no diagnostic significance and is of variable occurrence in the OPS from different and significant Brucella strains. This is due to its dependency on the frequency of the α-1,3 linkage, which in most A dominant strains is as low as 2% (apart from in B. suis biovar 2). A diagnostic assay that can only detect sera derived from infection with M dominant strains is of limited application, since infection with A dominant strains is also possible. As mentioned, it is completely unexpected that a specific M-antigen as described herein would be useful for detection of A-dominant, as well as M-dominant, strains of Brucella. 
The method according to the invention may be a method for determining whether an animal has been exposed to and/or infected with a Brucella organism, the method comprising a first step of contacting a first sample obtained from the animal with a diagnostic conjugate which is a universal antigen and detecting binding of the conjugate to at least one antibody present in the sample, the method optionally further comprising a second step of contacting a second sample obtained from the animal with a diagnostic conjugate which is a specific M-antigen and detecting binding of the conjugate with at least one anti-M antibody present in the sample. The first and second samples may be the same sample. The second step may be carried out only if the first step provides a positive indication that anti-A and/or anti-C/Y and/or anti-M antibodies (for example, anti-OPS antibodies such as anti-Brucella antibodies) are present in the sample. This is because a negative outcome to this first contacting step may be taken as an indication that the animal has not been or is not infected with or exposed to a Brucella organism. The method may encompass an initial step of obtaining the sample(s) from the animal.
Detection of binding of the diagnostic conjugate to an antibody, as mentioned herein, may be by any known technique such as an ELISA, fluorescence polarisation assay (FPA), TR-FRET assay, lateral flow assay or bead-based agglutination assay, as described in more detail above.
The universal antigen may comprise an oligosaccharide selected from Formulae XIII-XV. The specific M-antigen may comprise an oligosaccharide selected from Formulae I-XII. The method as described here may provide, therefore, a method for reducing the occurrence of false positive serological reactions (FPSRs) when conducting a method for determining whether an animal is infected with, or has been exposed to, a Brucella organism. “Reducing the occurrence” may be an indication that a lower proportion of FPSRs (as determined using conventional, prior art, serological methods) is determined as positive by the method of the invention, whilst effective determination of true positives is maintained. Alternatively or additionally, “reducing the occurrence” may be an indication that a greater proportion of animals determined by the method of the invention to be infected with a Brucella organism are in fact so infected, as compared to the proportion of animals determined to be infected using prior art methods. Confirmation of infection with a Brucella organism can be confirmed, for example, by microbiological culture (Nielsen et al. (“Bovine brucellosis” In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, pg 3-7).
The method according to the invention may be a method for differentiating animals infected with Brucella from animals vaccinated with a vaccine conjugate according to the sixth aspect of the invention, as outlined below. Such a vaccine conjugate comprises an oligosaccharide having at least two 4,6-dideoxy-4-acylamido-α-pyranose units, each unit being joined to an adjacent unit by a -(1-2)- link, the oligosaccharide being covalently linked to a vaccine carrier molecule. The use of the method, comprising use of the diagnostic conjugate according to the invention, enables the development of useful synthetic vaccines against Brucella, since the method provides a DIVA (Differentiating Infected from Vaccinated Animals) test to distinguish infected animals from animals vaccinated with a vaccine comprising exclusively -(1-2)- linked 4,6-dideoxy-4-acylamido-α-pyranose units.
According to a third aspect of the invention there is provided a diagnostic conjugate comprising an oligosaccharide comprising at least six 4,6-dideoxy-4-acylamido-α-pyranose units and comprising overlapping tetrasaccharides of Formula VII, such that the third and fourth 4,6-dideoxy-4-acylamido-α-pyranose units in one tetrasaccharide form the first and second 4,6-dideoxy-4-acylamido-α-pyranose units in the next tetrasaccharide, to form an oligosaccharide in which all links between multiple 4,6-dideoxy-4-acylamido-α-pyranose units are alternating -(1,2)- and -(1,3)- links, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity.
The oligosaccharide may be 6-100 4,6-dideoxy-4-acylamido-α-pyranose units in length, for example about 6, 8, 10, 12, 24, 36, 48, 60, 72, 84 or about 96 units in length. Whatever the overall length, the pattern of 4,6-dideoxy-4-acylamido-α-pyranose units and links is as follows, where “S” indicates a single 4,6-dideoxy-4-acylamido-α-pyranose unit, “2” indicates a -(1,2)- link and “3” indicates a -(1,3)- link:




That is, there are never consecutive links which are of the same type. Overlapping tetrasaccharides are underlined in the sequence above. 4,6-dideoxy-4-acylamido-α-pyranose unit numbers for the first tetrasaccharide in the chain are shown above the sequence in italics, with unit numbers for the second tetrasaccharide in the chain shown above the sequence in bold. This shows how the tetrasaccharides overlap such that the third and fourth units in one tetrasaccharide form the first and second units in the next tetrasaccharide.
Therefore, the oligosaccharide comprises at least one “S-2-S-3-S-2-S-3-S-2-S” subunit wherein each subunit is linearly linked to another subunit by an α-1,3 link.
According to a fourth aspect of the invention there is provided a diagnostic conjugate comprising an oligosaccharide comprising at least seven 4,6-dideoxy-4-acylamido-α-pyranose units and comprising overlapping tetrasaccharides of Formula VII, such that the fourth 4,6-dideoxy-4-acylamido-α-pyranose unit in one tetrasaccharide forms the first 4,6-dideoxy-4-acylamido-α-pyranose unit in the next tetrasaccharide, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity.
The oligosaccharide may be 7-100 4,6-dideoxy-4-acylamido-α-pyranose units in length, for example about 7, 10, 13, 16, 19, 21, 27, 33, 39, 45, 51, 57, 63, 69, 75, 81, 87, 93, 99 or about 105 units in length. Whatever the overall length, the pattern of 4,6-dideoxy-4-acylamido-α-pyranose units and links is as follows, where “S” indicates a single 4,6-dideoxy-4-acylamido-α-pyranose unit, “2” indicates a -(1,2)- link and “3” indicates a -(1,3)- link:




That is, there are never more than two consecutive α-1,2 links. Overlapping tetrasaccharides are underlined in the sequence above. 4,6-dideoxy-4-acylamido-α-pyranose unit numbers for the first tetrasaccharide in the chain are shown above the sequence in italics, with unit numbers for the second tetrasaccharide in the chain shown above the sequence in bold. This shows how the tetrasaccharides overlap such that the fourth unit in one tetrasaccharide forms the first unit in the next tetrasaccharide.
Therefore, the oligosaccharide comprises at least one “S-2-S-3-S-2-S-2-S-3-S” subunit wherein each subunit is linearly linked to another subunit by an α-1,2 link.
The diagnostic conjugate according to the third or fourth aspects of the invention each provide a specific M-antigen, capable of preferentially binding to an anti-M antibody as compared to the level of binding to an anti-C/Y or anti-A antibody.
A fifth aspect of the invention provides a kit for carrying out a method according to the invention, comprising a diagnostic conjugate according to the second and/or third and/or fourth aspects of the invention. The kit may also comprise means for obtaining and/or containing a biological sample from an animal. This kit may comprise, for example, laboratory reagents useful for conducting an antibody-antigen binding detection assay, such as an ELISA. The kit may comprise packaging materials and/or materials providing instructions for use of the kit.
The diagnostic conjugate contained in the kit may be in the form of a solid entity having attached thereto at least one oligosaccharide which comprises at least two 4,6-dideoxy-4-acylamido-α-pyranose units and comprising at least one -(1-3)- link between adjacent 4,6-dideoxy-4-acylamido-α-pyranose units. The solid entity may have attached thereto an oligosaccharide according to any of Formulae XIII-XV, thus providing a universal antigen, or an oligosaccharide according to any of Formulae I-XII, thus providing a specific M-antigen. The solid entity may be, for example, a surface such as an ELISA plate. The kit may comprise a diagnostic conjugate which is a universal antigen, or may comprise a diagnostic conjugate which is a specific M-antigen, and/or may comprise both a diagnostic conjugate which is a universal antigen and a diagnostic conjugate which is a specific M-antigen. A kit comprising both types of diagnostic conjugate is advantageously useable initially to detect in an animal infection by or exposure to an organism expressing an OPS (for example, a Brucella organism) and subsequently to confirm that the animal is infected with, or has been exposed to, a Brucella organism, as opposed to an organism such as Yersinia enterocolitica O:9.
According to a sixth aspect of the invention, there is provided a vaccine conjugate comprising an oligosaccharide having at least two 4,6-dideoxy-4-acylamido-α-pyranose units and comprising a -(1-2)- link between adjacent units, the oligosaccharide being covalently linked to a vaccine carrier molecule. The oligosaccharide within the vaccine conjugate comprises only -(1-2)- links. The linkage to the carrier molecule is achieved in accordance with the methods outlined above in relation to the diagnostic conjugate of the invention. A vaccine carrier molecule may be, for example, a protein or peptide which may be any known in the art to be useful as a conjugate to an antigenic molecule to form a vaccine. For example, the vaccine carrier molecule may be tetanus toxoid (Verez-Bencomo et al. (2004) Science 305, 522-525), CRIM 197 (Mawas et al. (2002) Infect. Immun. 70, 5107-5114) or other highly immunogenic proteins (Svenson & Lindberg (1981) Infect. Immun. 32, 490-496). The vaccine carrier molecule may also be an immunogenic particle such as a liposome or inactive viral particle wherein the oligosaccharide is incorporated at the surface of the particle.
A seventh aspect of the invention provides a vaccine composition comprising a vaccine conjugate according to the sixth aspect of the invention. The vaccine composition may further comprise excipients and/or diluents appropriate for the means by which the composition is to be administered to a subject in need of vaccination against infection by Brucella. Selection of appropriate components is within the routine capability of the skilled person without the application of inventive activity.
For example, the vaccine composition of the invention may conveniently be formulated using a pharmaceutically acceptable excipient or diluent, such as, for example, an aqueous solvent, non-aqueous solvent, non-toxic excipient, such as a salt, preservative, buffer and the like. Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oil and injectable organic esters such as ethyloleate. Aqueous solvents include water, alcoholic/aqueous solutions, saline solutions, parenteral vehicles such as sodium chloride, Ringer's dextrose, etc. Preservatives include antimicrobials, anti-oxidants, chelating agents and inert gases. The pH and exact concentration of the various components the vaccine composition are adjusted according to routine skills.
In certain situations, it may also be desirable to formulate the vaccine composition to comprise an adjuvant to enhance the immune response. Such adjuvants include all acceptable immunostimulatory compounds such as, for example, a cytokine, toxin, or synthetic composition. Commonly used adjuvants include aluminium hydroxide, aluminium phosphate, calcium phosphate, Freund's adjuvants and Quil-A saponin. In addition to adjuvants, it may be desirable to co-administer biologic response modifiers (BRM) with the vaccine conjugate to down regulate suppressor T cell activity.
Possible vehicles for administration of the vaccine composition include liposomes. Liposomes are microscopic vesicles that consist of one or more lipid bilayers surrounding aqueous compartments. Liposomes are similar in composition to cellular membranes and, as a result, liposomes generally can be administered safely and are biodegradable. Techniques for preparation of liposomes and the formulation (e.g., encapsulation) of various molecules with liposomes are well known.
Depending on the method of preparation, liposomes may be unilamellar or multilamellar and can vary in size with diameters ranging from 0.02 μm to greater than 10 μm. Liposomes can also adsorb to virtually any type of cell and then release the encapsulated agent. Alternatively, the liposome fuses with the target cell, whereby the contents of the liposome empty into the target cell. Alternatively, an absorbed liposome may be endocytosed by cells that are phagocytic. Endocytosis is followed by intralysosomal degradation of liposomal lipids and release of the encapsulated agents. In the present context, the vaccine conjugate in the composition according to the invention can be localized on the surface of the liposome, to facilitate antigen presentation without disruption of the liposome or endocytosis. Irrespective of the mechanism or delivery, however, the result is the intracellular disposition of the associated vaccine conjugate.
Liposomal vectors may be anionic or cationic. Anionic liposomal vectors include pH sensitive liposomes which disrupt or fuse with the endosomal membrane following endocytosis and endosome acidification.
Other suitable liposomes that are used in the compositions and methods of the invention include multilamellar vesicles (MLV), oligolamellar vesicles (OLV), unilamellar vesicles (UV), small unilamellar vesicles (SUV), medium-sized unilamellar vesicles (MIN), large unilamellar vesicles (LUV), giant unilamellar vesicles (GUV), multivesicular vesicles (MVV), single or oligolamellar vesicles made by reverse-phase evaporation method (REV), multilamellar vesicles made by the reverse-phase evaporation method (MLV-REV), stable plurilamellar vesicles (SPLV), frozen and thawed MLV (FATMLV), vesicles prepared by extrusion methods (VET), vesicles prepared by French press (FPV), vesicles prepared by fusion (FUV), dehydration-rehydration vesicles (DRV), and bubblesomes (BSV). Techniques for preparing these liposomes are well known in the art.
Other forms of delivery particle, for example, microspheres and the like, also are contemplated for delivery of the vaccine conjugate.
In one embodiment, the vaccine composition may be included in an animal feed (i.e., a foodstuff suitable for consumption by an animal) comprising a composition and/or a vaccine conjugate according to the invention. This may, in non-limiting examples, be in the form of pellets, crumbs or a mash which may further comprise, again for example only, grain, grass and/or protein components. The composition may also be included in drinking liquids and/or administered via a spray into the atmosphere surrounding the animal which is, consequently, inhaled by the animal.
The method and diagnostic conjugate according to the aspects of the invention described above enable such useful vaccine conjugates and compositions to be prepared for use to vaccinate animals against infection by Brucella, based on synthetic, exclusively -(1-2)- linked, 4,6-dideoxy-4-acylamido-α-pyranose oligosaccharides. This is because the method according to the invention provides a DIVA test to distinguish animals vaccinated with such a vaccine from animals infected from Brucella. 
Therefore, the vaccine conjugate and/or vaccine composition according to the invention may be for use in a method of vaccinating an animal against infection by Brucella, the method comprising administering the vaccine conjugate and/or vaccine composition to the animal. An eighth aspect of the invention, therefore, provides a method of vaccinating an animal against infection by Brucella, the method comprising administering the vaccine conjugate and/or vaccine composition to the animal. The method may further comprise subsequently confirming the presence, in a biological sample obtained from the animal, of anti-A and/or anti-C/Y antibodies, protective against Brucella infection, by means of a method according to the first aspect of the invention. For example, this may be by contacting the sample with a diagnostic conjugate which is a universal antigen as defined herein.
Throughout the description and claims of this specification, the words “comprise” and “contain” and variations of the words, for example “comprising” and “comprises”, mean “including but not limited to” and do not exclude other moieties, additives, components, integers or steps. Throughout the description and claims of this specification, the singular encompasses the plural unless the context otherwise requires. In particular, where the indefinite article is used, the specification is to be understood as contemplating plurality as well as singularity, unless the context requires otherwise.
Other features of the present invention will become apparent from the following examples. Generally speaking, the invention extends to any novel one, or any novel combination, of the features disclosed in this specification (including the accompanying claims and drawings). Thus, features, integers, characteristics, compounds or chemical moieties described in conjunction with a particular aspect, embodiment or example of the invention are to be understood to be applicable to any other aspect, embodiment or example described herein, unless incompatible therewith.
Moreover, unless stated otherwise, any feature disclosed herein may be replaced by an alternative feature serving the same or a similar purpose.



BRIEF DESCRIPTION OF THE FIGURES
Embodiments of the invention will now be described, by way of example only, with reference to FIGS. 1-27 in which:
FIG. 1 shows target pentasaccharide (1) which exhibits preferred binding to M-specific antibodies and nonasaccharide (2) designed to bind both A- and M-specific antibodies;
FIG. 2 shows results (expressed as a percentage of a common positive control) from the B. melitensis 16M OPS iELISA (x-axis) and Y. enterocolitica O:9 OPS iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 3A shows results (expressed as a percentage of a common positive control) for B. melitensis 16M OPS iELISA (x-axis) and Y. enterocolitica O:9 OPS iELISA (y-axis) ELISAs; the solid diamonds represent the results for sera from swine confirmed as infected with B. suis biovar 1 (n=41) and the crosses represent the results for sera from non-Brucella infected swine from herds with one or more animals that are positive in one or more conventional serodiagnostic assays (n=52);
FIG. 3B shows results (expressed as a percentage of a common positive control) for B. abortus S99 OPS iELISA (x-axis) and Y. enterocolitica O:9 OPS iELISA (y-axis) ELISAs; the solid diamonds represent the results for sera from swine confirmed as infected with B. suis biovar 1 (n=41) and the crosses represent the results for sera from non-Brucella infected swine from herds with one or more animals that are positive in one or more conventional serodiagnostic assays (n=52);
FIG. 4 shows selected ion count for the tetrasaccharide (m/z=711.3) (A) from B. melitensis 16M core OPS (three significant peaks visible at 8:05, 8.50 & 11:10 mins:secs), (B) from B. abortus S99 core OPS (five significant peaks visible at 8:05, 8:50, 9:20, 10:05 and 10:40 mins:secs), (C) from Y. enterocolitica O:9 core OPS (six significant peaks visible at 8:05, 9:20, 9:55, 10:10, 10:40 and 11:30 mins:secs); (D) from B. abortus S99 core OPS eluted from an affinity chromatography column conjugated with anti-Brucella mAb BM40 (three significant peaks visible at 8:50, 10:30 and 11:15 mins:secs); all core OPS hydrolysed and purified (by size exclusion chromatography) and analysed on a graphitised carbon HPLC column online with ESI-triple quadrupole mass spectrometer;
FIG. 5 shows inhibition of BM40 mAb binding to solid phase B. melitensis 16M OPS antigen (y-axis) by varied concentrations of competing liquid phase antigen (x-axis), with three types of competing OPS antigens (as shown in legend) evaluated in addition to the TSM antigen according to the invention;
FIG. 6 shows inhibition of rabbit anti-′M′ monospecific antisera binding to solid phase B. melitensis 16M core-OPS antigen (y-axis) (FIG. 7A) or inhibition of rabbit anti-‘A’ monospecific antisera binding to solid phase B. abortus S99 core-OPS antigen (y-axis) (FIG. 7B) by varied concentrations of competing liquid phase antigen (x-axis), with three types of competing OPS antigens evaluated (as shown in legend) in addition to the TSM (tetrasaccharide) antigen according to the invention;
FIG. 7 shows the results (expressed as a percentage of a common positive control) from the B. melitensis 16M OPS iELISA (x-axis) and TSM antigen iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 8 shows ELISA titration curves for Brucella A- and M-specific mAbs, YsT9-1 and Bm10; pentasaccharide conjugate 42 (right panel) and nona-saccharide conjugate 43 (left panel);
FIG. 9 shows results (expressed as a percentage of a common positive control) from the BSA-nonasaccharide conjugate iELISA (x-axis) and BSA-pentasaccharide conjugate iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 10 shows results (expressed as a percentage of a common positive control) from the BSA-tetrasaccharide conjugate iELISA (x-axis) and BSA-disaccharide conjugate iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 11 shows results (expressed as a percentage of a common positive control) from the BSA-trisaccharide conjugate (with terminal α-1,3 link) iELISA (x-axis) and BSA-trisaccharide conjugate (with terminal α-1,2 link) iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 12 shows ROC Curves generated from the results of the Y. enterocolitica O:9 OPS, B. melitensis 16M OPS, BSA-pentasaccharide, BSA-tetrasaccharide and BSA-disaccharide conjugate iELISAs as applied to sera from sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and sera from non-Brucella infected cattle that are positive in one or more conventional serodiagnostic assays (n=68);
FIG. 13 shows the results from the B. melitensis 16M OPS iELISA as applied to sera from four cattle experimentally infected with Brucella abortus strain 544 (Brucella #1 to #4, solid lines) and four cattle experimentally infected with Y. enterocolitica O:9 (YeO:9 #1 to #4, dashed lines); samples were taken on weeks 3, 7, 16 and 24 post infection;
FIG. 14 shows the results from the BSA-nonasaccharide conjugate iELISA as applied to sera from four cattle experimentally infected with Brucella abortus strain 544 (Brucella #1 to #4, solid lines) and four cattle experimentally infected with Y. enterocolitica O:9 (YeO:9 #1 to #4, dashed lines); samples were collected, on weeks 3, 7, 16 and 24 post infection;
FIG. 15 shows the results from the BSA-pentasaccharide conjugate iELISA as applied to sera from four cattle experimentally infected with Brucella abortus strain 544 (Brucella #1 to #4, solid lines) and four cattle experimentally infected with Y. enterocolitica O:9 (YeO:9 #1 to #4, dashed lines); samples were taken on weeks 3, 7, 16 and 24 post infection;
FIG. 16 shows the results from the B. melitensis 16M OPS iELISA (x-axis) and the BSA-pentasaccharide conjugate iELISA (y-axis) as applied to sera (n=16) from four cattle experimentally infected with Brucella abortus strain 544 (solid diamonds), and sera (n=16) from four cattle experimentally infected with Y. enterocolitica O:9 (crosses). Samples were taken on weeks 3, 7, 16 and 24 post infection; the scatter plot only distinguishes between samples from different infection types, not by animal and time post infection;
FIG. 17 shows the results from the BSA-tetrasaccharide conjugate iELISA as applied to sera from four cattle experimentally infected with Brucella abortus strain 544 (Brucella #1 to #4, solid lines) and four cattle experimentally infected with Y. enterocolitica O:9 (YeO:9 #1 to #4, dashed lines); samples were taken on weeks 3, 7, 16 and 24 post infection;
FIG. 18 shows the results from the BSA-disaccharide conjugate iELISA as applied to sera from four cattle experimentally infected with Brucella abortus strain 544 (Brucella #1 to #4, solid lines) and four cattle experimentally infected with Y. enterocolitica O:9 (YeO:9 #1 to #4, dashed lines); samples were taken on weeks 3, 7, 16 and 24 post infection;
FIG. 19 shows the results from the BSA-tetrasaccharide conjugate iELISA (x-axis) and the BSA-disaccharide conjugate iELISA (y-axis) as applied to sera (n=16) from four cattle experimentally infected with Brucella abortus strain 544 (solid diamonds), and sera (n=16) from four cattle experimentally infected with Y. enterocolitica O:9 (crosses). Samples were taken on weeks 3, 7, 16 and 24 post infection; the scatter plot only distinguishes between samples from different infection types, not by animal and time post infection;
FIG. 20 shows results (expressed as a percentage of a common positive control) from the BSA-nonasaccharide conjugate iELISA (x-axis) and BSA-pentasaccharide conjugate iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from randomly sampled brucellosis free cattle (n=125);
FIG. 21 shows results (expressed as a percentage of a common positive control) from the BSA-tetraasaccharide conjugate iELISA (x-axis) and BSA-disaccharide conjugate iELISA (y-axis); the solid diamonds represent the results for sera from cattle confirmed as infected with B. abortus biovar 1 (n=45) and the crosses represent the results for sera from randomly sampled brucellosis free cattle (n=125);
FIG. 22 shows the results (expressed as a percentage of a common positive control) for B. melitensis 16M OPS iELISA (x-axis) and TSM antigen (y-axis) ELISAs; the solid diamonds represent the results for sera from sheep and goats infected with B. melitensis biovar 3 (n=61) and the open triangles represent the results for sera from non-Brucella infected sheep and goats that have been randomly sampled within Great Britain (n=94);
FIG. 23 shows the results (expressed as a percentage of a common positive control) for the BSA-pentasaccharide conjugate iELISA (x-axis) and BSA-nonasaccharide conjugate (y-axis) ELISAs; the solid diamonds represent the results for sera from sheep and goats infected with B. melitensis biovar 3 (n=61) and the open triangles represent the results for sera from non-Brucella infected sheep and goats that have been randomly sampled within Great Britain (n=94);
FIG. 24 shows titration of human serum (#2) from a human patient diagnosed Brucella suis positive by bacterial culture, against copovidone-conjugated disaccharide conjugates 99a and 99b;
FIG. 25 shows titration of monoclonal antibodies and human serum #2 against ELISA plates coated with low loading, “Brucella A type” hexasaccharide conjugate 100b;
FIG. 26 shows titration of monoclonal antibodies and human serum #2 against ELISA plates coated with universal antigen “Brucella A and M type” hexasaccharide conjugate 98; and
FIG. 27 shows the binding of HRP conjugated BM40 anti-M mAb, expressed as iELISA optical density (OD) on the y-axis, against three BSA-oligosaccharide conjugates shown as three separate lines: the disaccharide, a trisaccharide and the tetrasaccharide



EXAMPLES
Oligosaccharide and Conjugate Synthesis
General methods are provided in the section below headed “General Synthesis Methods”.
Pentasaccharide 1 (FIG. 1; e.g. Formula XI) was selected as the largest sized antigen that might selectively exhibit M-type characteristics with limited cross reaction with A-specific antibodies. Nonasaccharide 2 (Formula XV above) was considered to be an antigen that would contain two A- and one M-type epitopes, which would serve as a universal antigen to detect antibodies in animals or humans infected by B. abortus, B. melitensis and B. suis. 
The large size of the target oligosaccharides 1 and 2, the incorporation of an internal 1,3 linkage and a tether for antigen synthesis was not previously attempted (Peters & Bundle (1989) Can. J. Chem. 67, 497-502) and necessitated the development of an improved synthetic strategy. The linker 5-methoxycarbonylpentanol (Lemieux et al. (1975) J. Am. Chem. Soc. 97, 4076-4083; Ogawa et al. (1996) Carbohydr. Res. 293, 173-94) was chosen for its compatibility with the strategy employed to deprotect the assembled oligosaccharides and for its flexibility in offering several routes for subsequent conjugation to protein to create glycoconjugate antigens (Kamath et al. (1996) Glycoconjugate 13, 315-319). Two distinct strategies were employed to synthesis first the penta- and nonasaccharides, with a second revised strategy to synthesise di-, tri-, tetra- and hexasaccharides. The second strategy employed related, but slightly modified, protection schemes for the construction of the monosaccharide and disaccharide synthons.
Synthetic Strategy 1
Well-established methods were utilised to synthesize compounds 3-6, as outlined below (Bundle et al. (1998) Carbohydr. Res. 174, 239-251). Lewis acid catalyzed glycosidation of 6 afforded the allyl glycoside 7, which was transesterified to 8. Formation of a 2,3-orthoester derivative which undergoes regioselective opening afforded the selectively protected building block 9 (Scheme 1).




We used N-phenyl trifluoroacetimidates for glycosylation reactions since this donor has been shown to be more efficient than the corresponding trichloroacetimidate derivative for glycosylations involving 6-deoxy sugar donors (Hanashima et al. (2007) Org. Lett. 9, 1777-1779). Selective deacetylation of 5 gave 10, and then reaction with the N-phenyl trifluoroacetimidoyl chloride in presence of cesium carbonate as base gave the glycosyl N-phenyl trifluoroacetimidate donor 11 (Hanashima et al. (2007) Org. Lett. 9, 1777-1779). Monosaccharide 5 was also converted to thioglycoside donor 12 and transesterification afforded the acceptor 13 (Peters & Bundle (1989) Can. J. Chem. 67, 491-496). Glycosylation of 13 by 11 was performed in the presence of trimethylsilyl trifluoromethanesulfonate to give disaccharide 14 in 94% yield with complete stereocontrol and without detectable amounts of β-anomer (Scheme 2).




The 1,3-linked trisaccharide building block 15 was created as its allyl glycoside since the selective removal of this anomeric protecting group allows facile access to a hemiacetal and subsequently an imidate leaving group (Du et al. (2001) Tetrahedron 57, 1757-1763). Glycosylation reactions were tried with allyl as a leaving group but all attempts to do so failed (Wang et al. (2007) J. Org. Chem. 72, 5870-2873). Consequently, 15 was selectively deprotected with palladium chloride in acetic acid (Du et al. (2001) Tetrahedron 57, 1757-1763) to give hemiacetal 16 which was in turn converted to the N-phenyl trifluoroacetimidate donor 17 (Scheme 3).




Glycosylation of 5-methoxycarbonylpentanol by thioglycoside 14 gave moderate to poor yields due to the low reactivity of acceptors of this type (Lemieux et al. (1975) J. Am. Chem. Soc. 97, 4076-4083). Hydrolysis of the thioethyl glycoside 14 gave hemiacetal 18 which was converted it to imidate 19. The six carbon linker 20 (El Fangour et al. (2004) J. Org. Chem. 69, 2498-1503) which was glycosylated by 19 to give the protected disaccharide glycoside 21 (Hou & Ková{hacek over (c)} (2010) Carbohydr. Res. 345, 999-1007). Transesterification of 21 gave the tether glycoside acceptor 22 (Scheme 4).




Pentasaccharide 23 was obtained from building blocks trisaccharide 17 and disaccharide glycoside 22 in 68% yield using TMSOTf as the activator (Scheme 5). Stepwise deprotection followed the sequence: deacetylation to give 24 in quantitative yield, azido group reduction with hydrogen sulfide to give 25. Compound 25 was directly formylated by a mixed anhydride (acetic anhydride/formic acid 2:1) to give 26 (Bundle et al. (1988) Carbohydr. Res. 174, 239-251). Following introduction of the N-formamido groups, NMR analyses of all subsequent compounds became difficult due to the presence of E/Z rotamers for each formyl group, leading to a potential mixture of 32 isomers. Their identity was confirmed by a limited set of characteristic NMR resonances and high resolution mass measurements. Pentasaccharide 1 was obtained by hydrogenolysis of benzyl ethers.




The synthesis of nonasaccharide 2 was envisaged as the creation of a pentasaccharide donor terminated by a 1,3 linkage which would then allow for a pentasaccharide donor with a participating group at C-2 to guide the stereoselective α-glycosylation of an exclusively 1,2-linked tetrasaccharide. To achieve the synthesis of the pentasaccharide donor, compound 14 was deprotected to give the corresponding acceptor 27 which was glycosylated by imidate donor 19. Tetrasaccharide 28 was formed in toluene at 100° C. as described for 21 (Hou & Ková{hacek over (c)} (2010) Carbohydr. Res. 345, 999-1007). Tetrasaccharide thioglycoside 28 was used directly as the donor for glycosylation of the monosaccharide glycoside 9 to give the α1,3-linkage. The allyl group of pentasaccharide 29 was then removed (Du et al. (2001) Tetrahedron 57, 1757-1763) to give 30 and the imidate donor 31 was obtained following reaction with N-phenyl trifluoroacetimidoyl chloride (Scheme 6).




Tetrasaccharide tether glycoside 32 was obtained by a 2+2 glycosylation of disaccharide acceptor 22 by the disaccharide donor 19 employing the same condition used to prepare 28. Transesterification of 32 gave the tetrasaccharide acceptor 33 which was glycosylated by pentasaccharide donor 31 to give nonasaccharide 34 in 30% yield. The sequence of deprotection steps (deacetylation to 35, reduction of azide to 36, N-formylation to 37 and hydrogenation) to give 2 followed the order used to obtain pentasaccharide 1 (Scheme 7).




The final compounds 1 and 2 were purified by reverse phase HPLC. Full NMR assignments were performed on the azido penta and nonasaccharide derivatives 24 and 35. Selected characteristic NMR resonances and high resolution mass confirmed the identity of derivatives 26 and 37 and the target oligosaccharides 1 and 2.
To enable conjugation to protein, pentasaccharide and nonasaccharide glycosides 1 and 2 were first converted to the respective amides 38 and 39 by reaction with ethylenediamine (Scheme 8). Reaction of 38 and 39 with dibutyl squarate gave the squarate half esters 40 and 41 which were isolated by reverse phase HPLC. The corresponding pentasaccharide and nonasaccharide bovine serum albumin (BSA) glycoconjugates 42 and 43 were prepared by reaction of a twenty to one molar ratio of 40 and 41 with BSA in borate buffer for 3 days. MALDI-TOF mass spectrometry indicated that each conjugate contained approximately 16 copies of the oligosaccharides per molecule of BSA.




Synthetic Strategy 2

This strategy set out to arrive at shorter oligosaccharides 44-47 that would provide M-specific antigens and achieve the level of discrimination described above.




Two additional compounds were synthesized; hexasaccharide 48 to provide a pure A epitope and compound 49 which provides an oligosaccharide of minimal size that encompasses both A and M epitopes. Oligosaccharide 49, along with the nonasaccharide 2, is a universal Brucella antigen. It corresponds to the terminal hexasaccharide of the Brucella O-antigen disclosed by Kubler-Kielb and Vinogradov (Carbohydr. Res. (2013) 378, 144-147).




In contrast to the synthesis of 1 and 2 where acetate esters and benzyl ethers were used, the synthesis of oligosaccharides 44-49 made use of benzoate esters and benzyl ether protecting groups to allow for the construction of 1,2 and 1,3 linkages. This distinct difference in protecting group strategy from the earlier synthesis of 1 and 2 allowed the use of trichloroacetimidate donors rather than the more difficult to prepare N-phenyl trifluoroacetimidates 11, 19 and 31. The synthons used to make oligosaccharides 44-49 were compounds 50-66. The monosaccharide imidates 53, 58 and 62 were synthesized as shown (Schemes 9 and 10). Two disaccharide thioglycosides 63 and 64 were prepared by glycosylation of 13 by imidates 53 and 62 (Scheme 10). The two 5-methoxycarbonylpentanol glycosides 65 and 66 were prepared by literature methods (Saksena et al. (2008) Carbohydr. Res. 343, 1693-1706; Saksena et al. (2005) Tetrahedron: Asymmetry 16, 187-197). Imidate 62 was used in the synthesis of 48 and 49.




The 1,3 linked disaccharide 67 was obtained by reaction of the imidate 53 with the acceptor 65. Trisaccharide 68 was obtained by reaction of the disaccharide thioglycoside 63 with the monosaccharide glycoside 65. Reaction of the monosaccharide imidate 58 with 66 gave the 1,2 linked disaccharide 69. When 69 was de-O-benzoylated the resulting disaccharide 70 could be glycosylated by the monosaccharide imidate 53 to give the trisaccharide 71 with a terminal 1,3 linkage. Disaccharide 70 also provides access to tetrasaccharide 72 when it was reacted with disaccharide thioglycoside 63 (Scheme 11).




Hexasaccharides 48 and 49 were elaborated on the monosaccharide glycoside 66 by glycosylation with the disaccharide thioglycoside 64 to give the trisaccharide 73 which after transesterification provides the alcohol acceptor 74, which serves as the common trisaccharide intermediate leading to both hexsaccharides (Scheme 12). The exclusively 1,2-linked hexasaccharide 48 was prepared by glycosylation of 74 by the disaccharide thioglycoside 64 to give pentasaccharide 75. Transesterification of the terminal benzoate group gave the pentasaccharide alcohol 76, which afforded hexasaccharide 77 after glycosylation by the imidate 53. Glycosylation of trisaccharide alcohol 74 by imidate 58 afforded tetrasaccharide 78. After transesterication of 78 the tetrasaccharide alcohol 79 is set up for introduction of a 1,3-linkage. Reaction with the disaccharide thioglycoside 63 gives the protected hexasaccharide 80.














Deprotection of the six oligosaccharides 67, 68, 71, 72, 77 and 80 employed identical reaction conditions (Scheme 13). This involved transesterification to remove benzoate esters, reduction of the azide groups to amines, acylation of amines by formic anhydride to afford formamides and lastly catalytic hydrogenation to afford the target oligosaccharides as 5 methoxycarbonylpentanol glycosides 44-49.
Conversion of the 5 methoxycarbonylpentanol glycosides 44-49 to antigens for diagnostic or vaccine applications followed a similar protocol to that described for the penta and nonasaccharides (Scheme 14).




A non-protein polymer aminated co-povidone was also used as an alternative and potential superior antigen for immunoassays. Representative conjugations are described for the disaccharide 44 and the hexasaccharide 48 (Scheme 15).




Potential vaccine candidates were synthesized by conjugating the two hexasaccharides 48 and 49 to monomeric tetanus toxoid. The squarate half esters 91 and 92 were each conjugated to tetanus toxoid to provide antigens 101 and 102 (Scheme 16).




General Synthesis Methods

Analytical TLC was performed on Silica Gel 60-F254 (Merck, Darmstadt) with detection by quenching of fluorescence and/or by charring with 5% sulfuric acid in ethanol. All commercial reagents were used as supplied. Column chromatography was performed on Silica Gel 230-400 mesh, 60 Å (Silicycle, Ontario) with HPLC quality solvents. Molecular sieves were crushed and stored in an oven at 150° C. and flamed dried under vacuum before use. Organic solutions were dried with anhydrous MgSO4 prior to concentration under vacuum at <40° C. (bath). All final compounds were purified by reverse phase chromatography performed on a Waters 600 HPLC system, using a Beckmann semi-preparative C-18 column (10×250 mm, 5μ) with a combination of acetonitrile and water as eluents. Products were detected with a Waters 2487 UV detector.
Optical rotations were measured with a Perkin-Elmer 241 polarimeter for samples in a 10 cm cell at 21±2° C. [α]D values are given in units of 10−1 deg cm2 g−1, with [α]D20 indicating that the temperature was 20° C. and [α]D21 indicating that the temperature was 21° C.
1H NMR spectra were recorded on 500, 600 or 700 MHz spectrometers. First order proton chemical shifts δH are referenced to either residual CHCl3 (δH 7.27, CDCl3) or CD2HOD (δH 3.30, CD3OD), or internal acetone (δH 2.225, D2O). 13C NMR spectra were recorded at 125 MHz, and chemical shifts are referenced to internal CDCl3 (δ 77.23) or external acetone (δ 31.07). The assignment of resonances for all compounds was made by two-dimensional homonuclear and heteronuclear chemical shift correlation experiments. Mass analysis was performed by positive-mode electrospray ionization on a hybrid sector-TOF mass spectrometer and for protein glycoconjugates by MALDI mass analysis, employing sinapinic acid as matrix.
The numbering used for compounds 4-41 is as follows:




and for compounds 42-92:





Methyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (4)
A solution of 3 (Bundle et al. (1988) Carbohydr. Res. 174, 239-251) (1.09 g, 5.36 mmol) and Bu2SnO (1.5 g, 6 mmol) in toluene (50 mL) was stirred at 140° C. for 2 h. Then, after cooling down, benzyl bromide (0.7 mL, 5.9 mmol) and Bu4NBr (1.9 g, 5.9 mmol) were added and the mixture was stirred overnight at 65° C. After evaporation of the solvent, a purification on a silica gel column (hexane/ethyl acetate 8:1) gave pure 4 (1.38 g, 87%). The NMR parameters are in agreement with the literature (Boschiroli et al. (2001) Curr. Op. Microbiol. 4, 58-64): 1H NMR (500 MHz, CDCl3): δ 7.5-7.3 (m, 5H; H—Ar), 4.72 (d, 3J1,2=1.7 Hz, 1H; H-1), 3.98 (dt, 3J2,3=3.3 Hz, 3J2,OH=1.6 Hz, 1H; H-2), 3.72 (dd, 3J3,4=9.6 Hz, 1H; H-3), 3.36 (s, 3H; OCH3), 2.39 (d, 1H; OH), 1.44 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): δ 137.2, 128-129, 100.0, 78.3, 72, 67.2, 66.4, 63.9, 55.0, 18.4 ppm; HRMS (ESI): m/z calcd for C14H19N3NaO4 [M+Na]+: 316.12678. found: 316.12705.
1,2-Di-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (5)
A solution of 4 (1.03 g, 5.07 mmol) in acetic anhydride/acetic acid/sulfuric acid (50:20:0.5, 35 mL) was stirred for 1.5 h at room temperature, and then poured into ice-cold 1 M K2CO3 solution. The product was extracted with dichloromethane and the extract was dried over MgSO4. The solvent was evaporated and co-evaporated with toluene. A chromatography column on silica (hexane/ethyl acetate 10:1) gave 5 as an anomeric mixture (1.4 g, 82%, α/β 93:7). The NMR parameters are in agreement with the literature (Boschiroli et al. (2001) Curr. Op. Microbiol. 4, 58-64): 1H NMR (500 MHz, CDCl3): δ(α) 7.4-7.3 (m, 5H; H—Ar), 6.02 (d, 3J1,2=2 Hz, 1H; H-1), 5.34 (dd, 3J2,3=3.3 Hz, 1H; H-2), 2.15, 2.11 (2s, 6H; OAc), 1.34 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): δ 169.8, 168.3, 137.0, 128-129, 91.0, 75.8, 71.8, 69.3, 66.3, 63.6, 20.9, 20.8, 18.5 ppm; elemental analysis calcd (%) for C17H21N3O6: C, 56.2; H, 5.8; N, 11.7. found: C, 56.2; H, 5.7; N, 11.3.
1,2,3-Tri-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranoside (6)
Compound 3 (1.03 g, 5.07 mmol) was acetylated with the same protocol used to obtain compound 5. Compound 6 (1.31 g, 82%) was obtained in a a/l 95:5 mixture. The separation was done only for analysis: The NMR parameters and physical constants are in agreement with the literature (Bundle et al. (1988) Carbohydr. Res. 174, 239-251): [α]D20(α)=+122 (c=1.2 in CHCl3); 1H NMR (500 MHz, CDCl3): δ(α) 5.98 (d, 3J1,2=1.6 Hz, 1H; H-1), 2.15, 2.13, 2.07 (3s, 9H; OAc), 1.36 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): δ 169.7, 169.6, 168.3, 90.6, 70.1, 69.3, 67.8, 62.1, 20.9, 20.7, 20.7, 18.4 ppm; HRMS (ESI): m/z calcd for C12H17N3NaO7 [M+Na]+: 338.09587. found: 338.09559; elemental analysis calcd (%) for C12H17N3O7: C, 45.7; H, 5.4; N, 13.3. found: C, 45.35; H, 5.45; N, 13.2.
Allyl 2, 3-di-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranoside (7)
To a solution of 6 (900 mg, 2.85 mmol) in dichloromethane (4 mL), was added BF3.Et2O (0.4 mL, 3.24 mmol). The mixture was stirred for 1 h at room temperature before adding allylic alcohol (0.3 mL, 4.41 mmol) and then stirred again for 2 days. Once the reaction was done, the mixture was cooled to 0° C., a satd. NaHCO3 solution was added and the mixture was stirred for 30 min. The product was extracted with ethyl acetate, the extract was dried (MgSO4), filtrated and concentrated. Purification on column chromatography (hexane/ethyl acetate 10:1) gave the allyl glycoside 7 (625 mg, 70%): [α]D20=+103 (c=1.5 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 5.25 (dd, 3J2,3=3.6 Hz, 3J3,4=10 Hz, 1H; H-3), 5.23 (dd, 3J1,2=1.7 Hz, 1H; H-2), 4.76 (d, 3J1,2=1.7 Hz, 1H; H-1), 2.15, 2.08 (2s, 6H; OAc), 1.37 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): δ 169.9, 169.6, 133.1, 118.1, 96.5, 70.4, 69.2, 68.4, 67.0, 62.7, 20.9, 20.8, 18.3 ppm; elemental analysis calcd (%) for C13H19N3O6: C, 49.8; H, 6.1; N, 13.4. found: C, 49.9; H, 6.3; N, 13.5.
Allyl 4-azido-4,6-dideoxy-α-D-mannopyranoside (8)
Allyl glycoside 7 (625 mg, 2 mmol) in methanol (20 mL) was treated with a 0.1 M solution of sodium methoxide (0.3 mL). After 1 h, the reaction was complete and neutralized with ion exchange resin H+. Filtration and removal of the solvent under vacuum gave pure diol 8 (447 mg, 98%): [α]D20=+117 (c=1.1 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 4.84 (d, 3J1,2=1.7 Hz, 1H; H-1), 3.93 (dd, 3J2,3=3.4 Hz, 1H; H-2), 1.34 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): δ 133.4, 117.7, 98.5, 70.5, 70.2, 68.2, 66.8, 66.0, 18.3 ppm (C-6); HRMS (ESI): m/z calcd for C9H15N3NaO4 [M+Na]+: 252.09548. found: 252.09579.
Allyl 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranoside (9)
To a solution of diol 8 (77 mg, 0.34 mmol) in dichloromethane (3.5 mL) were added triethyl orthoacetate (0.6 mL, 3.3 mmol) and p-toluenesulfonic acid (5 mg, 0.03 mmol). The mixture was stirred for 3 hrs at 50° C. When complete, the reaction was neutralized by triethylamine and concentrated. Acetic acid (80%, 8 mL) was added and the mixture was stirred for 30 min at room temperature, then concentrated. Compound 9 (91 mg, 98%) was purified by chromatography on silica (ethyl acetate/hexanes 1:10): [α]D20=+78 (c=1.0 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 5.08 (dd, 3J1,2=1.7 Hz, 3J2,3=3.6 Hz, 1H; H-2), 4.80 (d, 1H; H-1), 2.15 (s, 3H; OAc), 1.35 ppm (d, 3H; H-6); 13C NMR (126 MHz, CDCl3): (170.8, 133.2, 117.9, 96.5, 71.7, 69.2, 68.3, 66.9, 66.0, 21.0, 18.3 ppm; elemental analysis calcd (%) for C11H17N3O5: C, 48.7; H, 6.3; N, 15.5. found: C, 48.8; H, 6.2; N, 15.3.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranose (10)
To a solution of 5 (484 mg, 1.33 mmol) in dichloromethane (3 mL), dimethylamine (2 M in THF, 1.8 mL, 3.6 mmol) was added dropwise. The solution was then stirred for 2 days at room temperature. After evaporation of the solvent, pure compound 10 (432 mg) was obtained quantitatively: 1H NMR (500 MHz, CDCl3): δ 7.2-7.4 (m, 5H; H—Ar), 5.30 (s, 1H; H-1 β), 5.17 (d, 1H; H-1 α), 2.19 (s, 3H; OAc β), 2.13 (s, 3H; OAc α), 1.38 (d, 3H; H-6 β), 1.33 ppm (d, 3H; H-6 α); 13C NMR (126 MHz, CDCl3): δ 170.8, 170.3, 137.2, 136.8, 128-129, 92.9, 92.5, 78.5, 75.6, 71.7, 71.6, 71.2 (C-5 β), 68.5, 67.7, 67.0, 64.0, 63.4, 21.0, 20.9, 18.65, 18.5 ppm (C-6 β); elemental analysis calcd (%) for C15H19N3O5: C, 56.1; H, 6.0; N, 13.1. found: C, 56.0; H, 6.0; N, 13.0.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl N-phenyltrifluoroacetimidate (11)
Compound 10 (1.04 g, 3.2 mmol) was dissolved in dry dichloromethane (30 mL). N-phenyl trifluoroacetimidoyl chloride (1.2 mL, 9.6 mmol) and Cs2CO3 (3.2 g, 9.6 mmol) were added and the mixture was stirred overnight at room temperature. After filtration through celite, compound 11 (1.4 g, 87%) was purify on silica gel column (hexane/ethyl acetate 10:1): 1H NMR (500 MHz, CDCl3): δ 7.4-6.8 (m, 10H; H—Ar), 6.2 (br s, 1H; H-1 α), 5.85 (br s, 1H; H-2 α), 5.8 (br s, 1H; H-1 β), 5.46 (br s, 1H; H-2 β), 2.2 (s, 3H; OAc β), 2.15 (s, 3H; OAc α), 1.44 (d, 3J5,6=6.0 Hz, 3H; H-6 α), 1.33 ppm (d, 3J5,6=6.1 Hz, 3H; H-6 β); HRMS (ESI): m/z calcd for C23H23F3N4NaO5 [M+Na]+: 515.15128. found: 515.15147.
Ethyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-1-thio-α-D-mannopyranoside (14)
Donor 11 (3.44 g, 7 mmol) and acceptor 13 (obtained from 5 via 12) (Peters & Bundle (1989) Can. J. Chem. 67, 491-496) (1.75 g, 5.4 mmol) were dissolved in dry dichloromethane (50 mL) and TMSOTf (0.1 mL, 0.55 mol) was added at 0° C. The reaction was complete after 30 min. of stirring at 0° C., then 30 min. at room temperature and was quenched with few drops of NEt3. Disaccharide 14 (3.19 g, 94%) was obtained pure after flash chromatography column (toluene/ethyl acetate 1:0, then 9:1). The NMR parameters and physical constants are in agreement with the literature (Crump et al. (2003) Emerg. Infect. Dis. 9, 539-544): [α]D20=+129 (c=1.2 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.4-7.2 (m, 10H; H—Ar), 5.39 (dd, 3J1,2=1.6 Hz, 3J2,3=3.2 Hz, 1H; H-2II), 5.16 (d, 3J1,2=1.1 Hz, 1H; H-1I), 4.81 (d, 1H; H-1II), 3.89 (dd, 3J2,3=2.9 Hz, 1H; H-2I), 2.53 (2qd, 2J=13 Hz, 3J=7.4 Hz, 2H; S—CH2—CH3), 2.10 (s, 3H; Ac), 1.30 (d, 3H; H-6II), 1.29 (d, 3H; H-6), 1.25 ppm (t, 3H; S—CH2—CH3); 13C NMR (125 MHz, CDCl3): δ 170.0, 137.5, 137.2, 129-128, 99.7, 83.4, 78.2, 76.4, 75.5, 72.3, 71.7, 67.8, 67.7, 67.4, 64.5, 64.0, 25.7, 21.1, 18.6, 18.6, 15.0 ppm; elemental analysis calcd (%) for C30H38N6O7S: C, 57.5; H, 6.1; N, 13.4; S, 5.1. found: C, 57.5; H, 6.2; N, 13.2; S, 5.2.
Allyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranoside (15)
Donor 14 (188 mg, 0.3 mmol) and acceptor 9 (54 mg, 0.2 mmol) were dissolved in dry dichloromethane (6 mL) with molecular sieves, then NIS (72 mg, 0.32 mmol) and trifluoromethanesulfonic acid (9 μL, 0.1 mmol) were added at −30° C. The reaction was stirred at this temperature for 5 hours and then filtered through celite. The mixture was washed with Na2S2O3 then KHCO3. Trisaccharide 15 (114 mg, 65%) was obtained pure after flash chromatography (hexane/ethyl acetate 10:1): [α]D20=+64 (c=1.3 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.2-7.4 (m, 10H; H—Ar), 5.05 (dd, 3J1,2=1.8 Hz, 3J2,3=3.5 Hz, 1H; H-2I), 4.97 (d, 3J1,2=1.9 Hz, 1H; H-1II), 4.9 (d, 1H; H-1III), 4.76 (d, 1H; H-1I), 4.01 (dd, 3J2,3=3.0 Hz, 1H; H-2II), 2.10, 2.09 (2s, 6H; OAc), 1.33 (d, 3J5,6=6.0 Hz, 3H; H-6I), 1.32 (d, 3J5,6=6.6 Hz, 3H; H-6III), 1.26 ppm (d, 3H; H-6II); 13C NMR (126 MHz, CDCl3): δ 170.0, 169.8, 137.5, 137.1, 133.2, 127-129, 117.9, 101.0, 99.4, 96.2, 77.2, 77.1, 75.4, 73.3, 71.8, 71.6, 70.9, 68.5, 68.2, 67.8, 67.1, 66.9, 64.5, 63.8, 63.7, 21.0, 20.9, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C39H49N9NaO12 [M+Na]+: 858.33929. found: 858.33904.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranose (16)
Allyl glycoside 15 (76 mg, 91 μmol) was dissolved in a solution of AcONa in AcOH/H2O 9:1 (0.2 M, 2 mL) and PdCl2 (32 mg, 180 μmol) was added. The mixture was stirred overnight at room temperature and neutralized with NaHCO3. The product was extracted with dichloromethane and washed with water. Chromatography on silica gel (hexane/ethyl acetate 6:1) gave hemiacetal 16 (54 mg, 73%): 1H NMR (600 MHz, CDCl3): δ 7.2-7.4 (m, 10H; H—Ar), 5.4 (dd, 3J1,2=1.9 Hz, 3J2,3=3.2 Hz, 1H; H-2III), 5.14 (br s, 1H; H-1I), 5.08 (dd, 3J1,2=1.9 Hz, 3J2,3=3.3 Hz, 1H; H-2I), 4.98 (d, 3J1,2=2.0 Hz, 1H; H-1II), 4.9 (d, 1H; H-1III), 2.11, 2.09 (2s, 6H; OAc), 1.33 (d, 3H; H-6I), 1.32 (d, 3H; H-6III), 1.26 ppm (d, 3H; H-6II); 13C NMR (126 MHz, CDCl3): δ 170.1, 169.8, 137.5, 137.1, 127-129, 101.0, 99.4, 91.8, 77.2, 76.6, 75.4, 73.4, 71.8, 71.6, 71.2, 68.2, 67.8, 67.2, 66.9, 64.5, 63.8, 63.7, 21.0, 20.9, 18.5, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C36H45N9NaO2[M+Na]+: 818.30799. found: 818.30635.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranosyl N-phenyltrifluoroacetimidate (17)
Compound 17 (147 mg, 79%) was prepared from trisaccharide 16 (153 mg, 192 μmol) as described for 11 and obtained as a mixture α/β 3:2: 1H NMR (600 MHz, CDCl3): δ(α) 7.4-6.8 (m, 15H; H—Ar), 6.12 (br s, 1H; H-1I), 5.63 (br s, 1H; H-2I), 5.39 (dd, 3J1,2=1.9 Hz, 3J2,3=3.1 Hz, 1H; H-2I), 4.97 (br s, 1H; H-1III), 4.89 (d, 1H; H-1III), 4.0 (br s, 1H; H-2II), 2.16, 2.08 (2s, 6H; OAc), 1.46 (d, 3J5,6=6.2 Hz, 3H; H-6I), 1.29 (d, 3J5,6=6.2 Hz, 3H; H-6III), 1.26 ppm (d, 3J5,6=6.2 Hz, 3H; H-6II); HRMS (ESI): m/z calcd for C44H49F3N10NaO12 [M+Na]+: 989.33757. found: 989.33761.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranose (18)
To a solution of disaccharide thioglycoside 14 (210 mg, 0.33 mmol) in acetone (6 mL), NIS (90 mg, 0.44 mmol) and water (100 μL) were added at 0° C. and stirred at this temperature for 30 min. and then overnight at room temperature. After completion, NaHCO3 solid was added and acetone evaporated. An extraction dichloromethane/water and then a purification on silica gel gave the hemiacetal 18 (144 mg, 76%): H NMR (600 MHz, CDCl3): δ(α) 7.4-7.2 (m, 10H; H—Ar), 5.42 (dd, 3J1,2=2 Hz, 3J2,3=3.2 Hz, 1H; H-2II), 5.12 (dd, 3J1,2=1.8 Hz, 3J1,OH=3.5 Hz, 1H; H-1I), 4.87 (d, 1H; H-1II), 3.89 (dd, 3J2,3=3 Hz, 1H; H-2I), 2.10 (s, 3H; Ac), 1.30 ppm (2d, 6H; H-6I, H-6II); 13C NMR (126 MHz, CDCl3): δ(α) 169.9, 137.7, 137.2, 129-127, 99.5, 93.6, 77.3, 75.5, 74.1, 72.3, 71.7, 67.7, 67.4, 67.3, 64.3, 64.0, 21.1, 18.8, 18.7 ppm; elemental analysis calcd (%) for C28H34N6O8: C, 57.7; H, 5.9; N, 14.4. found: C, 57.9; H, 6.0; N, 14.0.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl N-phenyltrifluoroacetimidate (19)
Disaccharide 18 (538 mg, 0.92 mmol) was dissolved in dry dichloromethane (9 mL), N-phenyl trifluoroacetimidoyl chloride (350 μL, 2.8 mmol) and Cs2CO3 (0.9 g, 2.8 mmol) were added and the mixture was stirred overnight at room temperature. After evaporation of the solvent chromatography on silica gel (toluene/ethyl acetate 1:0 to 10:2) gave pure imidate 19 (623 mg, 90%): 1H NMR (500 MHz, CDCl3): δ(α) 7.4-6.7 (m, 15H; H—Ar), 6.05 (br s, 1H; H-1I), 5.41 (br s, 1H; H-2II), 4.86 (br s, 1H; H-1II), 3.85 (br s, 1H; H-2I), 2.10 (s, 3H; Ac), 1.33 (d, 3J5,6=6.2 Hz, 3H; H-6I), 1.18 ppm (d, 3J5,6=6.2 Hz, 3H; H-6II); 19F NMR (469 MHz, CDCl3): δ(α) −75.7 ppm; 13C NMR (125 MHz, CDCl3): δ 170.0, 143.3, 137.3, 137.2, 129-128, 124.7, 119.5, 99.5, 95.7, 77.1, 75.5, 72.9, 72.2, 71.8, 70.3, 68.0, 67.2, 63.9, 63.5, 21.1, 18.7, 18.5 ppm; HRMS (ESI): m/z calcd for C36H38F3KN7O8[M+K]+: 792.2366. found: 792.2363.
5-Methoxycarbonylpentyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (21)
Donor 19 (110 mg, 0.15 mmol) and 5-methoxycarbonylpentanol 20 (El Fangour et al. (2004) J. Org. Chem. 69, 2498-2503) (30 mg, 0.2 mmol) in solution in toluene (7 mL) with some molecular sieves were heated at 100° C. and TMSOTf (2 μL, 10 μmol) was added. After heating 1 hour at this same temperature, the reaction was quenched with pyridine, and the mixture filtered. Compound 21 (59 mg, 53%) was obtained after purification on silica gel chromatography column (eluent: ethyl acetate/hexane 1/6): [α]D20=+78 (c=1.0 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.2-7.4 (m, 10H; H—Ar), 5.41 (dd, 1H, 3J1,2=1.9 Hz, 3J2,3=3.2 Hz, H-2II), 4.86 (d, 1H, 3J1,2=1.8 Hz, H-1), 4.66 (d, 3J1,2=1.8 Hz, 1H; H-1I), 3.84 (dd, 3J1,2=2 Hz, 3J2,3=2.8 Hz, 1H; H-2I), 2.33 (t, 3Jd,e=7.5 Hz, 2H; H-e), 2.09 (s, 3H; Ac), 1.65 (quint, 3Jc,d=3Jd,e=7.6 Hz, 2H; H-d), 1.57 (m, 2H; H-b), 1.36 (m, 2H; H-c), 1.31 (d, 3J5,6=6 Hz, 3H; H-6II), 1.29 ppm (d, 3J5,6=6 Hz, 3H; H-6I); 13C NMR (125 MHz, CDCl3): δ 174.1, 169.9, 137.7, 137.2, 129-128, 99.5, 98.7, 77.9, 75.5, 74.1, 72.2, 71.7, 67.7, 67.7, 67.4, 67.2, 64.3, 64.0, 51.6, 34.1, 29.2, 25.8, 24.8, 21.1, 18.7, 18.6 ppm; elemental analysis calcd (%) for C35H46N6O10: C, 59.1; H, 6.5; N, 11.8. found: C, 59.0; H, 6.6; N, 11.4.
5-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (22)
Compound 21 (70 mg, 98 μmol) in methanol (3 mL) was treated with a 0.1 M solution of sodium methoxide (0.1 mL). After 1 h, the reaction was complete and neutralized with ion exchange resin H+. Filtration and removal of the solvent under vacuum gave quantitatively pure acceptor 22 (65 mg): [α]D20=+90 (c=1.7 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.3-7.4 (m, 10H; H—Ar), 4.94 (d, 3J1,2=1.7 Hz, 1H; H-1II), 4.67 (d, 3J1,2=2.1 Hz, 1H; H-1I), 3.99 (dd, 3J2,3=3.1 Hz, 1H; H-2II), 3.84 (dd, 3J2,3=3.0 Hz, 1H; H-2I), 3.35 (dt, 2J=9.7 Hz, 3Ja,b=6.4 Hz, 1H; H-a), 2.33 (t, 3Jd,e=7.5 Hz, 2H; H-e), 1.65 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.57 (m, 2H; H-b), 1.36 (m, 2H; H-c), 1.30 (d, 3J5,6=6.2 Hz, 3H; H-6II), 1.30 ppm (d, 3H; H-6I); 13C NMR (125 MHz, CDCl3): δ 174.1, 137.6, 137.3, 129-128, 101.0, 98.9, 78.0, 77.8, 74.1, 72.3, 72.2, 67.7, 67.4, 67.3, 67.2, 64.5, 64.0, 51.6, 34.1, 29.2, 25.8, 24.8, 18.7, 18.6 ppm; elemental analysis calcd (%) for C33H44N6O9: C, 59.3; H, 6.6; N, 12.6. found: C, 59.2; H, 6.45; N, 12.2.
5-Methoxycarbonylpentyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (23)
Trisaccharide imidate 17 (45 mg, 47 mol) and disaccharide alcohol 22 (17 mg, 25 μmol) were dissolved in dichloromethane (1 mL) and TMSOTf (1 μL, 5 μmol) was added at 0° C. The mixture was stirred 30 min. at 0° C. and 1 hour at room temperature before being quenched with one drop of pyridine. Purification on silica gel column (eluent: ethyl acetate/hexane 1/10) gave pure pentasaccharide 23 (25 mg, 68%): [α]D20=+80 (c=1.0 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.2-7.4 (m, 20H; H—Ar), 5.41 (dd, 3J1,2=1.7 Hz, 3J2,3=3.2 Hz, 1H; H-2V), 5.13 (dd, 3J1,2=1.9 Hz, 3J2,3=3.2 Hz, 1H; H-2III), 5.00 (d, 3J1,2=1.7 Hz, 1H; H-1II), 4.95 (d, 3J1,2=1.5 Hz, 1H; H-1IV), 4.90 (d, 1H; H-1V), 4.82 (d, 1H; H-1III), 4.61 (br s, 1H; H-1I), 3.98 (dd, 3J2,3=2.9 Hz, 1H; H-2II), 3.84 (dd, 3J2,3=2.3 Hz, 1H; H-2IV), 3.81 (dd, 3J2,3=2.3 Hz, 1H; H-2I), 3.68 (s, 3H; H-g), 3.58 (dt, 2J=9.7 Hz, 3Ja,b=6.6 Hz, 1H; H-a), 3.34 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 2.32 (t, 3Jd,e=7.5 Hz, 2H; H-e), 2.1 (s, 6H; Ac), 1.65 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.55 (m, 2H; H-b), 1.34 (m, 2H; H-c), 1.30 (d, 3H; H-6V), 1.29 (d, 3H; H-6IV), 1.28 (d, 3H; H-6I), 1.25 (d, 3H; H-6II), 1.18 ppm (d, 3H; H-6III); 13C NMR (125 MHz, CDCl3): δ 174.1, 169.9, 169.6, 137.7, 137.5, 137.5, 137.2, 129-128, 100.8, 100.3, 99.6, 98.8, 98.8, 77.8, 77.4, 76.8, 76.1, 75.5, 74.3, 73.9, 73.7, 72.3, 72.2, 72.0, 71.8, 70.6, 67.6, 68.4, 67.9, 67.9, 67.8, 67.3, 67.2, 64.6, 64.6, 64.2, 64.0, 63.9, 51.7, 34.1, 29.2, 25.8, 24.8, 21.1, 21.0, 18.8, 18.7, 18.6, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C69H7N15NaO20 [M+Na]+: 1468.6144. found: 1468.6140.
5-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-Dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (24)
Pentasaccharide 23 (82 mg, 57 μmol) in methanol (3 mL) was treated with a 0.1 M solution of sodium methoxide (0.1 mL). The reaction was stirred 1 hour at room temperature and then neutralized with ion exchange resin H+. Filtration, evaporation and column chromatography (eluent: ethyl acetate/toluene 1:6) gave pure compound 24 (67 mg, 86%): [α]D20=+80 (c=1.1 in CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.2-7.4 (m, 20H; H—Ar), 5.04 (d, 3J1,2=1.8 Hz, 1H; H-1IV), 4.98 (d, 3J1,2=1.7 Hz, 1H; H-1II), 4.95 (d, 3J1,2=1.8 Hz, 1H; H-1V), 4.86 (d, 3J1,2=1.7 Hz, 1H; H-1III), 4.62 (br s, 1H; H-1I), 4.06 (dd, 3J2,3=2.9 Hz, 1H; H-2IV), 3.99 (dd, 3J2,3=3.1 Hz, 1H; H-2II), 3.94 (dd, 3J2,3=2.9 Hz, 1H; H-2V), 3.93 (dd, 3J2,3=3.1 Hz, 1H; H-2III), 3.83 (app. t, 3J1,2=3J2,3=2.9 Hz, 1H; H-2I), 3.68 (s, 3H; H-g), 3.34 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 3.24 (t, 1H; H-4I), 2.32 (t, 3Jd,e=7.5 Hz, 2H; H-e), 1.65 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.56 (m, 2H; H-b), 1.34 (m, 2H; H-c), 1.32 (d, 3H; H-6II), 1.29 (d, 6H; H-6IV, H-6V), 1.29 (d, 3H; H-6I), 1.17 ppm (d, 3H; H-6III); 13C NMR (125 MHz, CDCl3): δ 174.1, 137.5, 137.5, 137.4, 137.3, 129-128, 101.1, 100.8, 100.7, 100.5, 98.8, 79.0, 77.9, 77.8, 77.8, 77.3, 73.8, 73.5, 73.4, 72.4, 73.4, 72.3, 72.3, 69.6, 67.7, 68.4, 67.9, 67.6, 67.6, 67.3, 67.3, 64.6, 64.4, 64.0, 63.9, 63.9, 51.7, 34.1, 29.2, 25.8, 24.8, 18.7, 18.7, 18.7, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C65H83N15NaO18 [M+Na]+: 1384.5933. found: 1384.5926.
5-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (1)
A solution of pentasaccharide 24 (67 mg, 49 μmol) in a mixture pyridine/NEt3 1:1 (6 mL) was saturated with H2S for 1 h and the media was then stirred for 24 h at room temperature. The solvent was co-evaporated with toluene and mass spectrometry of the crude product showed only one peak corresponding to compound 25 and no products arising from incomplete reduction: HRMS (ESI): m/z calcd for C65H94N5O18 [M+H]+: 1232.6588. found: 1232.6577. This crude material was directly used for formylation.
Compound 25 was dissolved in methanol (5 mL) and a solution of acetic anhydride/formic acid 2:1 (0.5 mL) was added. The mixture was stirred at room temperature overnight. The solvent was evaporated and pentasaccharide 26 (43 mg, 63% over 2 steps) was purified with a chromatography column (eluent: MeOH/DCM 1:10): HRMS (ESI): m/z calcd for C70H93N5NaO23 [M+Na]+: 1394.6154. found: 1394.6151.
Compound 26 (43 mg, 31 μmol) in solution in acetic acid (8 mL) with palladium on charcoal was stirred overnight at room temperature under atmosphere of hydrogen. After filtration and concentration, pentasaccharide 1 (17 mg, 54%) was purified on a reverse phase HPLC column (MeCN/H2O 15:85): 1H NMR (600 MHz, D2O): δ 8.21-8.19 (Z) and 8.02-8.00 (E) (m, 5H; NCHO), 5.20-4.90 (m, 5H; 5×H-1), 3.72-3.66 (m, 4H, H-a, H-g), 3.56-3.50 (m, 1H; H-a), 2.40 (t, 3Jd,e=7.4 Hz, 2H; H-e), 1.65-1.56 (m, 4H; H-b, H-d), 1.41-1.32 (m, 2H; H-c), 1.30-1.18 ppm (m, 15H; 5×H-6); HRMS (ESI): m/z calcd for C42H69N5NaO23 [M+Na]+: 1034.4276. found: 1034.4275.
Ethyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-1-thio-α-D-mannopyranoside (27)
Disaccharide 14 (570 mg, 0.91 mmol) in methanol (10 mL) was treated with a 0.1 M solution of sodium methoxide (0.3 mL). The reaction was stirred 2 hours at room temperature and then neutralized with ion exchange resin H+. Filtration, evaporation and column chromatography (eluent: ethyl acetate/hexane 1:4) gave pure alcohol 27 (433 mg, 81%): [α]D20=+175 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.5-7.3 (m, 10H; H—Ar), 5.18 (d, 3J1,2=1.4 Hz, 1H; H-1I), 4.91 (d, 3J1,2=1.5 Hz, 1H; H-1II), 3.99 (ddd, 3J2,3=3.2 Hz, 3J2,OH=1.6 Hz, 1H; H-2II), 3.96 (dd, 3J2,3=3 Hz, 1H; H-2I), 2.61 (dq, 3J=7.4 Hz, 2J=12.9 Hz, 1H; S—CH2), 2.55 (dq, 3J=7.5 Hz, 1H; S—CH2), 1.30 (d, 6H; H-6I, H-6II), 1.27 ppm (t, 3H; S—CH2—CH3); 13C NMR (126 MHz, CDCl3): δ 137.4, 137.2, 129-128, 101.1, 83.6, 78.3, 77.8, 76.1, 72.3, 72.3, 67.7, 67.5, 67.3, 64.7, 64.0, 25.8, 18.6, 18.6, 15.0 ppm; HRMS (ESI): m/z calcd for C28H36N6NaO6S [M+Na]+: 607.2309. found: 607.2303.
Ethyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-1-thio-α-D-mannopyranoside (28)
Donor 19 (226 mg, 0.30 mmol) and acceptor 27 (100 mg, 0.17 mmol) were dissolved in toluene (3 mL) with molecular sieves and TMSOTf (2 μL, 11 μmol) was added at 100° C. The mixture was stirred 1 hour at 100° C. before being quenched with one drop of pyridine. After filtration, a purification on silica gel column using toluene to elute the leaving group of the donor and then a mixture ethyl acetate/toluene 5:95 gave pure tetrasaccharide 28 (159 mg, 81%): [α]D20=+122 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.4-7.3 (m, 20H; H—Ar), 5.41 (dd, 3J1,2=1.8 Hz, 3J2,3=3.4 Hz, 1H; H-2IV), 5.10 (d, 3J1,2=1.4 Hz, 1H; H-1II), 4.95 (d, 3J1,2=1.8 Hz, 1H; H-1III), 4.85 (d, 1H; H-1V), 4.84 (d, 3J1,2=1.8 Hz, 1H; H-1II), 3.88 (dd, 3J2,3=2.9 Hz, 1H; H-2III), 3.85 (dd, 3J2,3=2.9 Hz, 1H; H-2I), 3.83 (dd, 3J2,3=2.9 Hz, 1H; H-2II), 2.59 (dq, 3J=7.4 Hz, 2J=13 Hz, 1H; S—CH2), 2.53 (dq, 3J=7.5 Hz, 1H; S—CH2), 2.11 (s, 3H; Ac), 1.27 (2d, 6H; H-6I, H-6II), 1.25 (t, 3H; S—CH2—CH3), 1.21 (d, 3H; H-6IV), 1.20 ppm (d, 3H; H-6III); 13C NMR (126 MHz, CDCl3): δ 169.9, 137.6, 137.3, 137.3, 137.2, 129-128, 100.7, 100.2, 99.3, 83.5 77.9, 77.0, 76.8, 76.2, 75.6, 73.6, 73.6, 72.4, 72.3, 72.2, 71.7 (CH2-Ph), 68.1, 68.0, 67.8, 67.7, 67.3, 64.7, 64.4, 64.2, 64.0, 25.7, 21.1, 18.8, 18.7, 18.6, 18.5, 15.0 ppm; HRMS (ESI): m/z calcd for C56H68N12NaO13S [M+Na]+: 1171.4642. found: 1171.4644.
Allyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranoside (29)
Donor 28 (197 mg, 171 mol) and acceptor 9 (37 mg, 136 mol) were dissolved in dry dichloromethane (5 mL) with molecular sieves, then NIS (46 mg, 200 mol) and trifluoromethanesulfonic acid (6 μL, 68 μmol) were added at 0° C. The reaction was stirred at this temperature for 15 min. and then filtered through celite. The mixture was washed with Na2S2O3 then KHCO3. Pentaccharide 29 (125 mg, 68%) was obtained pure after flash chromatography (hexane/ethyl acetate 6:1): [α]D20=+88 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.5-7.2 (m, 20H; H—Ar), 5.41 (dd, 3J1,2=1.8 Hz, 3J2,3=3.2 Hz, 1H; H-2V), 5.41 (dd, 3J1,2=1.8 Hz, 3J2,3=3.3 Hz, 1H; H-2I), 4.93 (m, 3H; HII, H-1III, H-1IV), 4.85 (d, 1H; H-1), 4.75 (d, 1H; H-1I), 3.87 (dd, 3J1,2=1.8 Hz, 3J2,3=2.9 Hz, 1H; H-2IV), 3.82 (dd, 3J1,2=1.8 Hz, 3J2,3=2.9 Hz, 1H; H-2III), 32.10, 2.08 (2s, 6H; Ac), 1.33 (d, 3H; H-6I), 1.29 (d, 3J5,6=6.2 Hz, 3H; H-6III), 1.24 (d, 3J5,6=6.2 Hz, 3H; H-6II), 1.20 (d, 3J5,6=6.2 Hz, 3H; H-6V), 1.14 ppm (d, 3J5,6=6.2 Hz, 3H; H-6IV); 13C NMR (126 MHz, CDCl3): δ 170.1, 169.9, 137.6, 137.4, 137.3, 137.3, 129-128, 133.3 118.1, 101.2, 100.5, 100.3, 99.2, 96.4, 77.4, 77.0, 76.8, 75.6, 73.6, 73.5, 73.3, 72.4, 72.2, 72.0, 71.7, 71.0, 68.6, 68.3, 68.2, 68.0, 67.8, 67.3, 67.1, 64.6, 64.4, 64.2, 64.1, 64.0, 21.1, 21.0, 18.7, 18.6, 18.6, 18.6, 18.5 ppm; HRMS (ESI): m/z calcd for C65H79N15NaO18 [M+Na]+: 1380.562. found: 1380.5611.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranose (30)
Allyl glycoside 29 (40 mg, 29 μmol) was dissolved in a solution of AcOH/H2O 9:1 (0.6 mL), AcONa (10 mg, 122 μmol) and PdCl2 (10 mg, 56 μmol) were added. The mixture was stirred overnight at room temperature and neutralized with NaHCO3. The product was extracted with dichloromethane, washed with water, dried over MgSO4, filtrated and concentrated. Chromatography on silica gel (hexane/ethyl acetate 2:1) gave compound 30 (24 mg, 62%): 1H NMR (600 MHz, CDCl3): δ 7.4-7.25 (m, 20H; H—Ar), 5.40 (dd, 3J1,2=1.8 Hz, 3J2,3=3.2 Hz, 1H; H-2V), 5.13 (br s, 1H; H-1I), 5.06 (dd, 3J1,2=1.8 Hz, 3J2,3=3.3 Hz, 1H; H-2I), 4.94 (d, 3J1,2=1.8 Hz, 1H; H-1II), 4.92 (d, 3J1,2=1.7 Hz, 2H; H-1III, H-1IV), 4.84 (d, 1H; H-1V), 3.98 (dd, 3J2,3=2.8 Hz, 1H; H-2II), 3.87 (dd, 3J2,3=2.9 Hz, 1H; H-2IV), 3.82 (dd, 3J2,3=2.8 Hz, 1H; H-2III), 2.10, 2.08 (2s, 6H; Ac), 1.33 (d, 3H; H-6I), 1.29 (d, 3J5,6=6.2 Hz, 3H; H-6III), 1.24 (d, 3J5,6=6.2 Hz, 3H; H-6II), 1.20 (d, 3J5,6=6.2 Hz, 3H; H-6V), 1.14 ppm (d, 3J5,6=6.2 Hz, 3H; H-6IV). 13C NMR (126 MHz, CDCl3): δ 170.2, 170.0, 137.6, 137.4, 137.3, 137.3, 129-128, 101.2, 100.5, 100.3, 99.2, 92.0, 77.0, 76.8, 76.6, 76.6, 75.6, 73.6, 73.6, 73.4, 72.4, 72.2, 72.0, 71.7, 71.2, 68.3, 68.2, 68.0, 67.8, 67.3, 67.1, 64.6, 64.4, 64.2, 64.1, 64.0, 21.1, 21.0, 18.7, 18.6, 18.6, 18.6, 18.5 ppm. HRMS (ESI): m/z calcd for C62H75N15NaO18 [M+Na]+: 1340.5307. found: 1340.5291.
2-O-Acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranosyl N-phenyltrifluoroacetimidate (31)
To a solution of free pentasaccharide 30 (118 mg, 89 μmol) in dichloromethane (2 mL) were added N-phenyl trifluoroacetimidoyl chloride (34 μL, 270 μmol) and Cs2CO3 (90 mg, 280 mol). The mixture was stirred overnight at room temperature. After filtration, a purification on silica gel column (eluent: ethyl acetate/hexane 1:9) gave donor 31 (104 mg, 79%) in a a/3 mixture which was used directly for the next glycosylation: HRMS (ESI): m/z calcd for C70H79F3N16NaO18 [M+Na]+: 1511.5603. found: 1511.5600.
5-Methoxycarbonylpentyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (32)
Donor 19 (117 mg, 160 μmol) and acceptor 22 (65 mg, 97 μmol) were dissolved in toluene (2 mL) with molecular sieves and TMSOTf (2 μL, 11 μmol) was added at 100° C. The mixture was stirred 1 hour at 100° C. before being quenched with one drop of pyridine. After filtration, a purification on silica gel column using toluene to elute the leaving group of the donor and then a mixture ethyl acetate/toluene 5:95 gave pure tetrasaccharide 32 (93 mg, 77%): [α]D20=+55 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.4-7.3 (m, 20H; H—Ar), 5.40 (dd, 3J1,2=1.8 Hz, 3J2,3=3.2 Hz, 1H; H-2IV), 4.94 (d, 3J1,2=1.8 Hz, 1H; H-1III), 4.87 (d, 3J1,2=1.9 Hz, 1H; H-1II), 4.84 (d, 1H; H-1IV), 4.60 (d, 3J1,2=1.5 Hz, 1H; H-1I), 3.87 (dd, 3J2,3=3 Hz, 1H; H-2II), 3.83 (dd, 3J2,3=2.9 Hz, 1H; H-2II), 3.78 (dd, 3J2,3=2.9 Hz, 1H; H-2I), 3.68 (s, 3H; H-g), 3.57 (dt, 3Ja,b=6.6 Hz, 2J=9.6 Hz, 1H; H-a), 3.32 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 2.32 (t, 3Jd,e=7.5 Hz, 2H; H-e), 2.11 (s, 3H; Ac), 1.64 (quint, 3Jc,d=7.5 Hz, 2H; H-d), 1.55 (m, 2H; H-b), 1.34 (m, 2H; H-c), 1.26 (2d, 6H; H-6I, H-6II), 1.20 (d, 3H; H-6IV), 1.16 ppm (d, 3H; H-6III); 13C NMR (151 MHz, CDCl3): δ 174.1, 169.9, 137.6, 137.5, 137.3, 137.3, 129-128, 100.6, 100.2, 99.2, 98.7, 77.6, 77.0, 76.8, 75.6, 74.2, 73.6, 73.6, 72.4, 72.3, 72.2, 71.7, 68.0, 67.9, 67.8, 67.7, 67.3, 67.2, 64.5, 64.4, 64.2, 64.0, 51.7, 34.1, 29.2, 25.8, 24.8, 21.1, 18.8, 18.7, 18.6, 18.5 ppm; elemental analysis calcd (%) for C61H76N12O16: C, 59.40; H, 6.21; N, 13.63. found: C, 59.62; H, 5.93; N, 13.36.
5-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (33)
Tetrasaccharide 32 (90 mg, 73 mol) in methanol (3 mL) was treated with a 0.1 M solution of sodium methoxide (0.1 mL). The reaction was stirred 2 hours at room temperature and then neutralized with ion exchange resin H+. Filtration, evaporation and chromatography on silica gel (eluent: ethyl acetate/hexane 1:6) gave pure alcohol 33 (73 mg, 84%): [α]D20=+104 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.4-7.3 (m, 20H; H—Ar), 4.97 (d, 3J1,2=1.8 Hz, 1H; H-1), 4.95 (d, 3J1,2=1.9 Hz, 1H; H-1III), 4.87 (d, 3J1,2=1.9 Hz, 1H; H-1II), 4.60 (d, 3J1,2=1.8 Hz, 1H; H-1I), 5.40 (dd, 3J2,3=3.0 Hz, 1H; H-2IV), 3.87 (dd, 3J2,3=3.0 Hz, 1H; H-2III), 3.83 (dd, 3J2,3=2.9 Hz, 1H; H-2II), 3.78 (dd, 3J2,3=2.9 Hz, 1H; H-2I), 3.32 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 2.32 (t, 3Jd,e=7.6 Hz, 2H; H-e), 2.30 (br. s, 1H; OH), 1.64 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.55 (m, 2H; H-b), 1.34 (m, 2H; H-c), 1.26 (2d, 6H; H-6, H-6II), 1.20 (d, 3H; H-6IV), 1.17 ppm (d, 3H; H-6III); 13C NMR (126 MHz, CDCl3): δ 174.1, 137.5, 137.5, 137.3, 137.3, 129-128, 100.6, 100.5, 100.4, 98.7, 77.8, 77.6, 77.1, 76.7, 74.1, 73.7, 73.4, 72.4, 72.3, 72.3, 72.2, 67.9, 67.9, 67.6, 67.5, 67.3, 67.2, 64.5, 64.4, 64.3, 64.0, 51.7, 34.1, 29.2, 25.8, 24.8, 18.8, 18.7, 18.7, 18.5 ppm; HRMS (ESI): m/z calcd for C59H74N12NaO15 [M+Na]+: 1213.5289. found: 1213.5278.
5-Methoxycarbonylpentyl 2-O-acetyl-4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 2-O-acetyl-4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (34)
Donor 31 (104 mg, 70 μmol) and acceptor 33 (73 mg, 61 μmol) were dissolved in toluene (1.5 mL) with molecular sieves and TMSOTf (1 μL, 5 μmol) was added. The mixture was stirred 3 hours at room temperature before being quenched with one drop of pyridine. After filtration, a purification on silica gel column using toluene with a gradient of ethyl acetate (from 0% to 10%) gave pure nonasaccharide 34 (45 mg, 30%): [α]D20=+95 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.4-7.2 (m, 40H; H—Ar), 5.40 (dd, 3J1,2=1.9 Hz, 3J2,3=3.1 Hz, 1H; H-2IX), 5.12 (dd, 3J1,2=1.9 Hz, 3J2,3=3.2 Hz, 1H; H-2V), 4.97 (d, 3J1,2=1.5 Hz, 2H; H-1), 4.94 (d, 3J1,2=1.8 Hz, 1H; H-1), 4.93 (d, 3J1,2=1.8 Hz, 1H; H-1), 4.86 (d, 3J1,2=1.7 Hz, 1H; H-1), 4.85 (d, 3J1,2=1.8 Hz, 1H; H-1), 4.84 (d, 3J1,2=1.7 Hz, 1H; H-1IX), 4.82 (d, 3J1,2=1.5 Hz, 1H; H-1V), 4.59 (d, 3J1,2=1.1 Hz, 1H; H-1I), 3.95 (dd, 3J2,3=2.8 Hz, 1H; H-2), 3.87 (dd, 3J2,3=3 Hz, 1H; H-2), 3.85 (dd, 3J2,3=2.8 Hz, 1H; H-2), 3.84 (dd, 3J2,3=3 Hz, 1H; H-2), 3.83 (dd, 3J2,3=3 Hz, 1H; H-2), 3.80 (dd, 3J2,3=3 Hz, 1H; H-2), 3.76 (dd, 3J2,3=3 Hz, 1H; H-2I), 3.57 (dt, 2J=9.7 Hz, 3Ja,b=6.7 Hz, 1H; H-a), 3.32 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 2.32 (t, 3Jd,e=7.5 Hz, 2H; H-e), 2.10, 2.06 (2s, 6H; Ac), 1.64 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.55 (m, 2H; H-b), 1.33 (m, 2H; H-c), 1.27-1.12 ppm (9d, 3J5,6=6.2 Hz, 27H; H-6); 13C NMR (126 MHz, CDCl3): δ 174.1 (C-f), 169.9, 169.6, 137.6, 137.5, 137.5, 137.4, 137.4, 137.3, 137.3, 137.3, 129-128, 100.8, 100.6, 100.5, 100.3, 100.2, 100.1, 99.2, 98.8, 98.7, 77.6, 77.0, 76.8, 76.8, 76.7, 76.6, 76.6, 76.0, 75.6, 74.3, 74.2, 73.7, 73.6, 73.6, 73.5, 73.4, 72.4, 72.4, 72.4, 72.3, 72.2, 72.2, 72.1, 71.7, 70.6, 68.4, 68.2, 68.0, 68.0, 68.0, 67.9, 67.8, 67.8, 67.3, 67.7, 67.2, 64.6, 64.5, 64.4, 64.4, 64.4, 64.2, 64.2, 64.2, 64.0, 51.7, 34.1, 29.2, 25.8, 24.8, 21.1, 21.0, 18.8, 18.7, 18.7, 18.7, 18.6, 18.6, 18.5, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C121H147N27NaO32 [M+Na]+: 2513.0598. found: 2513.0561.
5-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (35)
Nonaccharide 34 (45 mg, 18 mol) in methanol (2 mL) was treated with a 0.1 M solution of sodium methoxide (0.1 mL). The reaction was stirred 2 hours at room temperature and then neutralized with ion exchange resin H+. Filtration, evaporation and chromatography on silica gel (eluent: ethyl acetate/hexane 1:6) gave pure compound 35 (34 mg, 78%): [α]D20=+100 (c=1.0 in CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.4-7.3 (m, 40H; H—Ar), 4.99 (d, 3J1,2=1.6 Hz, 1H; H-1), 4.97 (d, 3J1,2=1.6 Hz, 1H; H-1), 4.96 (d, 3J1,2=1.6 Hz, 1H; H-1), 4.94 (br s, 2H; H-1), 4.87 (d, 3J1,2=1.6 Hz, 1H; H-1), 4.87 (d, 3J1,2=1.6 Hz, 1H; H-1), 4.86 (d, 3J1,2=1.7 Hz, 1H; H-1), 4.59 (d, 3J1,2=1.6 Hz, 1H; H-1I), 3.99 (m, 2H; H-2), 3.93 (m, 2H; H-2), 3.91 (br s, 1H; H-2), 3.85 (dd, 3J1,2=1.6 Hz, 3J2,3 3 Hz, 1H; H-2), 3.83 (dd, 3J1,2=1.6 Hz, 3J2,3=3 Hz, 1H; H-2), 3.81 (dd, 3J2,3=3 Hz, 1H; H-2), 3.77 (dd, 3J2,3=3 Hz, 1H; H-2I), 3.68 (s, 3H; H-g), 3.57 (dt, 2J=9.7 Hz, 3Ja,b=6.7 Hz, 1H; H-a), 3.32 (dt, 3Ja,b=6.4 Hz, 1H; H-a), 2.32 (t, 3Jd,e=7.5 Hz, 2H; H-e), 1.64 (quint, 3Jc,d=7.6 Hz, 2H; H-d), 1.55 (m, 2H; H-b), 1.33 (m, 2H; H-c), 1.27, 1.27, 1.26, 1.25, 1.20, 1.20, 1.19, 1.15, 1.15 ppm (9d, 3J5,6=6.2 Hz, 27H; H-6); 13C NMR (126 MHz, CDCl3): δ 174.1, 137.5, 137.5, 137.5, 137.3, 137.3, 137.3, 137.3, 137.3, 129-128, 100.8, 100.7, 100.6, 100.6, 100.5, 100.4, 100.3, 100.2, 98.7, 79.0, 77.8, 77.6, 77.5, 77.4, 77.0, 76.8, 76.7, 74.2, 73.6, 73.6, 73.5, 73.4, 73.4, 73.3, 72.4, 72.4, 72.4, 72.4, 72.4, 72.3, 72.2, 72.2, 69.6, 68.5, 68.2, 68.0, 68.0, 68.0, 67.9, 67.6, 67.5, 67.3 (C-5), 67.2 (C-2), 67.7 (C-a), 64.5, 64.4, 64.4, 64.4, 64.3, 64.3, 64.1, 64.0, 64.0, 51.7, 34.1, 29.2, 25.8, 24.8, 18.8, 18.7, 18.7, 18.7, 18.6, 18.6, 18.6, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C117H143N27NaO30 [M+Na]+: 2429.0386. found: 2429.0353.
5-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (2)
A solution of nonasaccharide 35 (34 mg, 14 mol) in a mixture pyridine/NEt3 1:1 (4 mL) was saturated with H2S for 1 h and the media was then stirred for 24 h at room temperature. The solvent was co-evaporated with toluene and mass spectrometry of the crude product showed only one peak corresponding to compound 36 and no more product from incomplete reduction: HRMS (ESI): m/z calcd for C117H162N9O30 [M+H]+: 2173.1439. found: 2173.1422. This crude material was directly used for formylation.
Compound 36 was dissolved in methanol (3 mL) and a solution of acetic anhydride/formic acid 2:1 (0.3 mL) was added. The mixture was stirred at room temperature overnight. The solvent was evaporated and nonasaccharide 37 (21 mg, 62% over 2 steps) was purified with a chromatography column (eluent: MeOH/DCM 1:10): HRMS (ESI): m/z calcd for C126H161N9Na2O39 [M+2Na]2+: 1235.0338. found: 1235.0333.
Compound 37 (21 mg, 8.6 μmol) in solution in acetic acid (5 mL) with palladium on charcoal was stirred overnight at room temperature under atmosphere of hydrogen. After filtration and concentration, nonasaccharide 2 (7 mg, 48%) was purified on a reverse phase HPLC column (MeCN/H2O 18:82): 1H NMR (600 MHz, D2O): δ 8.21-8.00 (m, 9H; NCHO), 5.21-4.84 (m, 9H; 9×H-1), 4.20-3.78 (m, 34H; 9×H-2, 9×H-3, 7×H-4, 9×H-5), 3.74-3.68 (m, 4H; H-a, H-g), 3.56-3.3.34 (m, 3H; 2×H-4, H-a), 2.40 (t, 3Jd,e=7.4 Hz, 2H; H-e), 1.66-1.58 (m, 4H; H-b, H-d), 1.42-1.33 (m, 2H; H-c), 1.30-1.15 ppm (m, 27H; 9×H-6); HRMS (ESI): m/z calcd for C70H113N9O39Na2 [M+2Na]2+: 874.846. found: 874.8467.
Proton labeling of the linker for compounds 38-41 is as follows:




(2-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (38)
A solution of 1 (12 mg, 11.8 mol) in freshly distilled 1,2-diaminoethane (550 μL) was stirred at 50° C. for 48 h then concentrated. The residue was dissolved in water, neutralized with acetic acid and purified by reversed phase HPLC on C18 column in gradient water-acetonitrile to give 38 as a white powder (10 mg, 81%): 1H NMR (500 MHz, D2O): δ 8.21-8.19 and 8.02-8.00 (m, 5H; NCHO), 5.17-4.86 (m, 5H; 5×H-1), 4.19-3.76 (m, 19H; 5×H-2, 5×H-3, 4×H-4, 5×H-5), 3.71-3.66 (m, 1H; H-a), 3.55-3.51 (m, 1H; H-a), 3.50-3.32 (m, 1H; H-4), 3.27 (t, 3Jf,g=6.2 Hz, 2H; H-f), 2.80 (t, 2H; H-g), 2.26 (t, 3Jd,e=7.4 Hz, 2H; H-e), 1.64-1.54 (m, 4H; H-b, H-d), 1.40-1.31 ppm (m, 2H; H-c), 1.30-1.16 (m, 15H; 5×H-6); HRMS (ESI): m/z calcd for C43H74N7O22 [M+H]+: 1040.4881. found: 1040.4879.
1-[(2-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (40)
To a solution of amine 38 (5 mg, 4.8 mol) in a mixture of water (300 μL) and ethanol (200 μL) a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 26 μL) was added and pH was adjusted to 8 by addition of sodium bicarbonate solution. After 0.5 h, when TLC indicated the reaction was complete, the reaction mixture was neutralized with acetic acid and purified by reversed phase HPLC (C18) using gradient water-acetonitrile. Product which came out at 20% of acetonitrile was lyophilized to afford squarate 40 as a white powder (4.2 mg, 73%): 1H NMR (600 MHz, D2O): δ 8.23-8.18 and 8.06-7.98 (m, 5H; NCHO), 5.18-5.87 (m, 5H; 5×H-1), 4.69 (m, 2H; H-h), 3.72-3.58 (m, 3H; H-a, 2×H-f), 3.51-3.36 (m, 4H; H-4, H-a, 2×H-g). 2.24-2.17 (m, 2H; H-e), 1.82-1.74 (m, 2H; H-i), 1.61-1.49 (m, 4H; H-b, H-d), 1.49-1.38 (m, 2H; H-j), 1.33-1.18 (m, 17H; 15×H-6, H-c), 0.96-0.91 (m, 3H; H-k); HRMS (ESI): m/z calcd for C51H81N7NaO25 [M+Na]+: 1214.5174. found: 1214.5177.
(2-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (39)
Methyl ester 2 (5.9 mg, 3.46 μmol) in freshly distilled ethylenediamine (400 μL) was stirred at 50° C. for 48 h. TLC indicated the reaction was almost complete. The mixture was concentrated, dissolved in water and neutralized with 10% acetic acid. It was first purified on a SepPak C18 cartridge washing it first with water and then with methanol. Methanol fractions containing the product were combined and concentrated and then purified on HPLC (C18) using water-acetonitrile gradient. The product came out at 12% of acetonitrile. It was concentrated and lyophilized to yield the title amine 39 as a white powder (4.5 mg, 75%): 1H NMR (500 MHz, D2O):δ 8.22-7.99 (m, 9H; NCHO), 5.20-4.86 (m, 9H; 9×H-1), 4.18-3.76 (m, 34H; 9×H-2, 9×H-3, 7×H-4, 9×H-5), 3.72-3.66 (m, 1H; H-a), 3.55-3.29 (m, 5H; 2×H-4, H-a, H-f), 2.81 (m, 2H; H-g), 2.26 (t, 3Jd,e=7.4 Hz, 2H; H-e), 1.65-1.58 (m, 4H; H-b, H-d), 1.40-1.30 (m, 2H; H-c), 1.30-1.16 (m, 27H; 9×H-6); HRMS (ESI): m/z calcd for C71H118N11O38 [M+H]+: 1732.7634. found: 1732.7596.
1-[(2-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (41)
The amine 39 (4.5 mg, 2.5 μmol) was dissolved in water (0.3 mL) and ethanol (0.2 mL) was added to the solution. It was stirred at room temperature and a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione in ethanol (20%, 17 μL) was added and the pH of the reaction mixture was adjusted to 8 by careful addition of NaHCO3 solution. When TLC indicated the reaction was complete the mixture was neutralized with 10% acetic acid and purified by reversed phase HPLC (C18) using gradient water-acetonitrile. The product which came out at 20% of acetonitrile was concentrated and lyophilized to afford title compound 41 as a white powder (3.7 mg, 76%): 1H NMR (500 MHz, D2O): δ 8.31-8.08 (m, 9H; NCHO), 5.30-4.94 (m, 9H; 9×H-1), 4.82-4.74 (m, 2H; H-h), 4.28-3.42 (m, 42H; 9×H-2, 9×H-3, 9×H-4, 9×H-5, H-a, H-f, H-g), 2.33-2.25 (m, 2H; H-e), 1.91-1.82 (m, 2H; H-i), 1.70-1.57 (m, 4H; H-b, H-d), 1.56-1.48 (m, 2H; H-j), 1.42-1.23 (m, 29H; 9×H-6, H-c), 1.05-0.99 (m, 3H; H-k); HRMS (ESI): m/z calcd for C79H125N11Na2O41 [M+2Na]+2: 964.8909. found: 964.8904.
Methyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranoside (50) (Eichler et al. (1991) Glycoconjugate 8, 69-74)
Benzoyl chloride (2.0 mL, 17.2 mmol) was added dropwise to a stirred solution of Methyl 4-azido-4,6-dideoxy-α-D-mannopyranoside 3 (Bundle et al. (1998) Carbohydr. Res. 174, 239-251) (1.59 g, 7.82 mmol) in pyridine (5 mL) containing DMAP (0.191 g, 1.56 mmol) at 0° C. The resulting mixture was stirred under argon for 10 h at room temperature. Then CH3OH (2 mL) was added to the reaction mixture. It was stirred for 10 min, then diluted with CH2Cl2 ( ̃100 mL) and washed with aq. HCl (1M, 2×50 mL), water (100 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (3.12 g, 97%) as a white foam. Analytical data for 50: Rf=0.40 (ethyl acetate/hexane, 1/9, v/v); [α]D21=−130.8 (c=1.1, CHCl3); 1H NMR (600 MHz, CDCl3): δ 8.21-7.31 (m, 10H, H—Ar), 5.60 (dd, 1H, J2,3=1.8 Hz, H-2), 5.59 (dd, 1H, J3,4=3.6 Hz, H-3), 4.85 (d, 1H, J1,2=1.2 Hz, H-1), 3.83 (dq, 1H, J4,5=10.2 Hz, J5,6=6.0 Hz, H-5), 3.76 (dd, 1H, J4,5=10.2 Hz, H-4), 3.45 (s, 3H, —OCH3), 1.48 ppm (d, 3H, J5,6=6.0 Hz, H-6); 13C NMR (126 MHz, CDCl3): δ 165.4, 165.3, 133.8, 133.5, 133.3, 130.2, 129.8, 129.8, 129.5, 129.3, 128.6, 128.5, 128.4, 98.6, 71.1, 69.8, 66.9, 63.5, 55.4, 18.6 ppm; HRMS (ESI): m/z calcd for C21H21N3O6Na [M+Na]+: 434.1323. found: 434.1317.
1-O-Acetyl-4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranose (51)
A solution of 50 (3.10 g, 7.54 mmol) in acetic anhydride/acetic acid/sulfuric acid (50:20:0.5, 70 mL) was stirred at room temperature for 6 h, and then poured into ice-cold 1M K2CO3 solution (100 mL). The mixture was then diluted with CH2Cl2 ( ̃200 mL) and washed with water (2×100 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (3.04 g, 92%) as a white foam. Analytical data for 51: Rf=0.30 (ethyl acetate/hexane, 1/9, v/v); [α]D21=−119.8 (c=1.1, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.35-8.09 (m, 10H, H—Ar), 6.25 (d, J=1.5 Hz, 1H, H-1), 5.65 (dd, J2,3=3.5 Hz, 1H, H-2), 5.61 (dd, J3,4=10.1 Hz, 1H, H-3), 3.91 (dq, J=10.2, 6.2 Hz, 1H, H-5), 3.85 (dd, J4,5=10.1 Hz, 1H, H-4), 2.24 (s, 3H, —OC—CH3), 1.51 (d, J5,6=6.2 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 168.4, 165.4, 165.1, 133.7, 133.5, 129.9, 129.8, 129.1, 129.0, 128.6, 128.5, 90.7, 70.9, 69.4, 68.6, 63.0, 21.0, 18.7 ppm; HRMS (ESI): m/z calcd for C22H21N3O7Na [M+Na]+: 462.1272. found: 462.1265.
4-Azido-2,3-di-O-benzoyl-4,6-dideoxy-α/β-D-mannopyranose (52)
Hydrazine acetate (0.056 g, 0.612 mmol) was added to a stirred solution of 51 (0.224 g, 0.510 mmol) in DMF (1 mL) under argon atmosphere and the solution was stirred at 60° C. for 30 min. Then the mixture was cooled to room temperature, diluted with ethyl acetate (50 mL), washed with water (2×50 mL) and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (0.191 g, 95%) as a white foam. Analytical data for 52: Rf=0.30 (ethyl acetate/hexane, 1/4, v/v); 1H NMR (500 MHz, CDCl3): α:β ratio=7:1; δ 7.11-8.06 (m, 20H, H—Ar), 5.78 (dd, J2,3=3.0 Hz, 1H, H-2β), 5.66 (dd, J3,4=10 Hz, 1H, H-3α), 5.63 (dd, J2,3=3.2 Hz, 1H, H-2α), 5.36 (dd, J1,2=1.6 Hz, 1H, H-1α), 5.30 (dd, J3,4=10.3 Hz, 1H, H-3β), 5.07 (dd, J1,2=1.5 Hz, 1H, H-1β), 1.52 (d, J5,6=6.0 Hz, 3H, H-6β), 1.45 ppm (d, J5,6=6.2 Hz, 3H, H-6α); 13C NMR (126 MHz, CDCl3): δ 166.1, 165.5, 165.4, 133.8, 133.5, 133.4, 130.0, 129.8 (×2), 129.4, 129.2, 129.0 (×2), 128.9, 128.7, 128.6, 128.5, 128.4, 128.2, 92.9, 92.1, 73.3, 71.4, 70.9, 70.8, 70.2, 67.1, 63.6, 62.8, 18.7, 18.6 ppm; HRMS (ESI): m/z calcd for C20H19N3O6Na [M+Na]+: 420.1166. found: 420.1163.
4-Azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl trichloroacetimidate (53)
To a stirred solution of 52 (2.0 g, 5.03 mmol) in CH2Cl2 (20 mL) containing CCl3CN (10.1 mL, 100 mmol), DBU (0.150 mL, 1.00 mmol) was added at room temperature under an argon atmosphere. After 10 min, solvents were evaporated in vacuo and the residue was purified by column chromatography on silica gel (ethyl acetate hexane gradient elution) to afford the title compound (2.335 g, 86%) as an off-white foam. Analytical data for 53: Rf=0.60 (ethyl acetate/hexane, 1/4, v/v); [α]D21=−101.9 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 8.79 (s, 1H, N—H), 7.33-8.09 (m, 10H, H—Ar), 6.43 (d, J1,2=1.5 Hz, 1H, H-1), 5.85 (dd, J2,3=3.5 Hz, 1H, H-2), 5.68 (dd, J3,4=10.5 Hz, 1H, H-3), 4.07 (dq, J=10.2, 6.2 Hz, 1H, H-5), 3.88 (dd, J4,5=10.2 Hz, 1H, H-4), 1.53 ppm (d, J5,6=6.2 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 165.3, 165.1, 160.0, 133.7, 133.5, 129.9, 129.8, 129.1, 129.0, 128.7, 128.5, 94.7, 90.7, 70.9, 69.9, 68.1, 62.9, 18.7 ppm; HRMS (ESI): m/z calcd for C22H19Cl3N4O6Na [M+Na]+: 563.0262. found: 563.0251.
Methyl 4-azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (55)
Benzoyl chloride (0.872 mL, 7.5 mmol) was added dropwise to a stirred solution of 54 (Peters & Bundle (1989) Can. J. Chem. 67, 497-502) (2.0 g, 6.82 mmol) in pyridine (10 mL) containing DMAP (0.166 g, 1.36 mmol) at 0° C. The resulting mixture was stirred under argon for 3 h at room temperature. Then CH3OH (2 mL) was added to the reaction mixture which was stirred for 10 min, then diluted with CH2Cl2 ( ̃80 mL) and washed with aq. HCl (1M, 2×50 mL), water (100 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (2.47 g, 91%) as oil. Analytical data for 55: Rf=0.50 (ethyl acetate/hexane, 1/9, v/v); [α]D21=−18.8 (c=1.1, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.13-8.10 (m, 10H, H—Ar), 5.32 (dd, J3,4=10.4 Hz, 1H, H-3), 4.71 (d, J1,2=1.4 Hz, 1H, H-1), 3.37 (s, 3H, —OCH3), 1.42 ppm (d, J5,6=6.2 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 165.5, 137.5, 133.3, 129.9, 129.5, 128.5, 128.3, 127.8 (×2), 98.9, 74.8, 73.3, 73.2, 67.0, 63.2, 55.0, 18.5 ppm; HRMS (ESI): m/z calcd for C21H23N3O5Na [M+Na]+: 420.1530. found: 420.1521.
1-O-Acetyl-4-azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α-D-mannopyranose (56)
A solution of 55 (1.40 g, 3.52 mmol) in acetic anhydride/acetic acid/sulfuric acid (50:20:0.5, 35 mL) was stirred at room temperature for 3 h, and then poured into ice-cold 1M K2CO3 solution (100 mL). The mixture was then diluted with CH2Cl2 ( ̃100 mL) and washed with water (2×80 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (1.22 g, 81%) as a white foam. Analytical data for 56: Rf=0.30 (ethyl acetate/hexane, 1/9, v/v); [α]D21=−9.9 (c=1.5, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.10-8.08 (m, 10H, H—Ar), 6.17 (d, J1,2=1.3 Hz, 1H, H-1), 5.29 (dd, J3,4=10.5 Hz, 1H, H-3), 4.00 (dd, J2,3=3.5 Hz, 1H, H-2), 2.15 (s, 3H, —OC—CH3), 1.42 ppm (d, J5,6=6.1 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 169.0, 165.6, 136.9, 133.5, 129.9, 129.2, 128.5, 128.4, 128.0, 127.9, 91.1, 73.5, 73.0, 72.7, 69.6, 62.6, 21.0, 18.5 ppm; HRMS (ESI): m/z calcd for C22H23N3O6Na [M+Na]+: 448.1479. found: 448.1471.
4-Azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α/β-D-mannopyranose (57)
Hydrazine acetate (0.310 g, 3.35 mmol) was added to a stirred solution of 56 (1.190 g, 2.79 mmol) in DMF (10 mL) under argon atmosphere and stirred at 60° C. for 30 min. Then the mixture was cooled to room temperature, diluted with ethyl acetate (100 mL), washed with water (2×80 mL) and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (0.912 g, 85%) as a white foam. Analytical data for 57: Rf=0.30 (ethyl acetate/hexane, 1/4, v/v); 1H NMR (500 MHz, CDCl3): α:β ratio=5:1; δ 7.16-8.14 (m, 20H, H—Ar), 5.43 (dd, J3,4=10.4 Hz, 1H, H-3α), 5.27 (dd, J1,2=1.8 Hz, J1,—OH=3.3 Hz, 1H, H-1α), 5.13 (dd, J3,4=10.5 Hz, 1H, H-3β), 4.82 (dd, J1,2=1.5 Hz, J1,—OH=11.6 Hz, 1H, H-1β), 4.14 (dd, J2,3=3.0 Hz, 1H, H-2β), 4.06 (dd, J2,3=3.1 Hz, 1H, H-2α), 1.46 (d, J5,6=6.2 Hz, 3H, H-6β), 1.42 ppm (d, J5,6=6.1 Hz, 3H, H-6α); 13C NMR (126 MHz, CDCl3): δ 165.6 (×2), 137.4, 137.1, 133.8, 133.4, 129.9, 129.5, 128.9, 128.7, 128.5, 128.3 (×2), 128.2, 127.9, 127.8, 93.2, 92.7, 76.3, 75.8, 75.7, 75.0, 73.3, 72.9, 70.9, 67.2, 63.2, 62.6, 18.6, 18.5 ppm; HRMS (ESI): m/z calcd for C20H21N3O5Na [M+Na]+: 406.1373. found: 406.1366.
4-Azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl trichloroacetimidate (58)
To a stirred solution of 57 (0.890 g, 2.32 mmol) in CH2Cl2 (15 mL) containing CCl3CN (4.65 mL, 46.4 mmol), DBU (70 μL, 0.464 mmol) was added at room temperature under argon atmosphere. After 10 min, solvents were evaporated in vacuo and the residue was purified by column chromatography on silica gel (ethyl acetate hexane gradient elution) to afford the title compound (1.136 g, 93%) as an off-white foam. Analytical data for 58: Rf=0.80 (ethyl acetate/toluene, 1/9, v/v); [α]D21=−7.3 (c=1.5, CHCl3); 1H NMR (600 MHz, CDCl3): δ 8.66 (s, 1H, —C═NH), 7.12-8.10 (m, 10H, H—Ar), 6.36 (d, J1,2=1.8 Hz, 1H, H-1), 5.39 (dd, J3,4=7.2 Hz, 1H, H-3), 4.26 (dd, J2,3=3.1 Hz, 1H, H-2), 3.91-3.99 (m, 2H, H-4, H-5), 1.48 ppm (d, J5,6=6.0 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 165.5, 160.4, 137.0, 133.5, 129.9, 129.2, 128.5, 128.4, 128.0 (×2), 127.9, 95.3, 90.8, 73.2, 73.0, 72.8, 70.1, 62.5, 18.6 ppm; HRMS (ESI): m/z calcd for C22H21Cl3N4O5Na [M+Na]+: 549.0470. found: 549.0465.
Methyl 4-azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (59)
Benzoyl chloride (0.872 mL, 7.5 mmol) was added dropwise to a stirred solution of 4 (2.0 g, 6.82 mmol) in pyridine (10 mL) containing DMAP (0.166 g, 1.36 mmol) at 0° C. The resulting mixture was stirred under argon for 3 h at room temperature. Then CH3OH (2 mL) was added to the reaction mixture, stirred for 10 min, then diluted with CH2Cl2 ( ̃80 mL) and washed with aq. HCl (1M, 2×50 mL), water (100 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (2.32 g, 86%) as a white foam. Analytical data for 59: Rf=0.50 (ethyl acetate/hexane, 1/9, v/v); [α]D21=−27.9 (c=1.7, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.21-8.10 (m, 10H, H—Ar), 5.55 (dd, J2,3=3.2 Hz, 1H, H-2), 4.77 (d, J1,2=1.8 Hz, 1H, H-1), 3.91 (dd, J3,4=9.7 Hz, 1H, H-3), 3.37 (s, 3H, —OCH3), 1.38 ppm (d, J5,6=6.0 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 165.6, 137.3, 133.3, 129.9, 129.7, 128.4, 128.3, 128.1, 127.8, 98.8, 76.1, 71.4, 67.8, 66.8, 64.3, 55.1, 18.7 ppm; HRMS (ESI): m/z calcd for C21H23N3O5Na [M+Na]+: 420.1530. found: 420.1528.
1-O-Acetyl-4-azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α/β-D-mannopyranose (60)
A solution of 59 (2.06 g, 5.19 mmol) in acetic anhydride/acetic acid/sulfuric acid (50:20:0.5, 35 mL) was stirred at room temperature for 3 h, and then poured into ice-cold 1M K2CO3 solution (100 mL). The mixture was then diluted with CH2Cl2 ( ̃100 mL) and washed with water (2×80 mL), 5% aq. NaHCO3 (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (1.95 g, 89%) as a white foam.]α:β ratio=9:1 (isolated yield); Analytical data for 60: α/β ratio=9:1 (isolated yield); α-anomer: Rf=0.45 (ethyl acetate/hexane, 1.5/8.5, v/v); [α]D21=+1.8 (c=1.9, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.27-8.09 (m, 10H, H—Ar), 6.16 (d, J1,2=2.0 Hz, 1H, H-1), 2.13 (s, 3H, —OC—CH3), 1.40 ppm (d, J5,6=6.0 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 168.3, 165.3, 136.9, 133.5, 129.9, 129.3, 128.5, 128.4, 128.2, 128.0, 91.1, 75.8, 71.6, 69.3, 66.7, 63.8, 20.9, 18.7 ppm; HRMS (ESI): m/z calcd for C22H23N3O6Na [M+Na]+: 448.1479. found: 448.1475; β-anomer: Rf=0.40 (ethyl acetate/hexane, 1.5/8.5, v/v); [c]D21=−50.2 (c=1.2, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.27-8.13 (m, 10H, H—Ar), 5.82 (dd, J2,3=3.5 Hz, 1H, H-2), 5.77 (d, J1,2=1.5 Hz, 1H, H-1), 2.03 (s, 3H, —OC—CH3),), 1.46 ppm (d, J5,6=6.0 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 168.8, 165.8, 136.6, 133.4, 130.0, 129.5, 128.5 (×2), 128.3, 128.1, 91.2, 78.1, 72.1, 71.4, 66.8, 63.6, 20.8, 18.6 ppm; HRMS (ESI): m/z calcd for C22H23N3O6Na [M+Na]+: 448.1479. found: 448.1474.
4-Azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α/β-D-mannopyranose (61)
Hydrazine acetate (0.572 g, 6.20 mmol) was added to a stirred solution of 60 (2.20 g, 5.17 mmol) in DMF (7 mL) under argon atmosphere and stirred at 60° C. for 30 min. Then the mixture was cooled to room temperature, diluted with ethyl acetate (100 mL), washed with water (2×80 mL) and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (1.83 g, 93%) as a white foam. Analytical data for 61: Rf=0.30 (ethyl acetate/hexane, 1/4, v/v); 1H NMR (500 MHz, CDCl3): α/β ratio=5:1; δ 7.25-8.15 (m, 20H, H—Ar), 5.74 (dd, J2,3=3.5 Hz, 1H, H-2β), 5.60 (dd, J2,3=3.1 Hz, 1H, H-2α), 5.32 (d, J1,2=1.3 Hz, 1H, H-1α), 4.89 (s, 1H, H-1β), 1.47 (d, J5,6=6.2 Hz, 3H, H-6β), 1.40 ppm (d, J5,6=6.1 Hz, 3H, H-6α); 13C NMR (126 MHz, CDCl3): δ 166.3, 165.7, 137.2, 136.8, 133.6, 133.3, 130.0, 129.9, 129.6, 129.2, 128.5, 128.4 (×2), 128.3, 128.2, 128.0, 127.8, 93.2, 92.5, 78.5, 75.6, 71.5 (×2), 71.3, 69.2, 68.2, 67.1, 64.3, 63.7, 18.7 (×2) ppm; HRMS (ESI): m/z calcd for C20H21N3O5Na [M+Na]+: 406.1373. found: 406.1374.
4-Azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl trichloroacetimidate (62)
To a stirred solution of 61 (1.820 g, 4.75 mmol) in CH2Cl2 (20 mL) containing CCl3CN (9.50 mL, 95.0 mmol), DBU (140 μL, 0.95 mmol) was added at room temperature under argon atmosphere. After 10 min, solvents were evaporated in vacuo and the residue was purified by column chromatography on silica gel (ethyl acetate-hexane gradient elution) to afford the title compound (2.0 g, 80%) as an off-white foam. Analytical data for 62: Rf=0.60 (ethyl acetate/hexane, 1/4, v/v); [α]D21=−10.8 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 8.70 (s, 1H, —C═NH), 7.28-8.12 (m, 10H, H—Ar), 6.31 (d, J1,2=1.8 Hz, 1H, H-1), 5.67 (dd, J2,3=3.5 Hz, 1H, H-2), 3.98 (dd, J3,4=10.0 Hz, 1H, H-3), 3.57-3.66 (dd, J4,5=10.0 Hz, 1H, H-4), 1.38-1.44 ppm (d, J5,6=6.5 Hz, 3H, H-6); 13C NMR (126 MHz, CDCl3): δ 165.3, 159.8, 136.7, 133.5, 129.9, 129.3, 128.6 (×3), 128.5 (×2), 128.4, 128.1, 95.0, 90.7, 75.2, 71.6, 69.9, 66.4, 63.7, 18.7 ppm; HRMS (ESI): m/z calcd for C22H21Cl3N4O5Na [M+Na]+: 549.0470. found: 549.0475.
Ethyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-1-thio-α-D-mannopyranoside (63)
A mixture of glycosyl donor 53 (1.010 g, 1.87 mmol), glycosyl acceptor 13 Peters & Bundle (1989) Can. J. Chem. 67, 491-496) (0.550 g, 1.70 mmol), and freshly activated molecular sieves (3 Å, 2.0 g) in CH2Cl2 (30 mL) was stirred under argon for 5 h at room temperature. TMSOTf (67 μL, 0.374 mmol) was added and the resulting mixture was stirred for an additional 60 min. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate ( ̃100 mL) was washed with 20% aq. NaHCO3 (50 mL), water (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (1.073 g, 90%) as a white foam. Analytical data for 63: Rf=0.70 (ethyl acetate/toluene, 1/9, v/v); [α]D21=−18.4 (c=1.1, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.12-8.03 (m, 15H, H—Ar), 5.70 (dd, J2,3=3.2 Hz, 1H, H-2B), 5.62 (dd, J3,4=10.3 Hz, 1H, H-3B), 5.24 (d, J1,2=1.5 Hz, 1H, H-1A), 4.98 (d, J1,2=1.5 Hz, 1H, H-1B), 2.54-2.67 (m, 2H, S—CH2—), 1.44 (d, J5,6=6.2 Hz, 3H, H-6B), 1.37 (d, J5,6=6.1 Hz, 3H, H-6A), 1.29 ppm (t, J=7.4 Hz, 3H, S—CH2—CH3); 13C NMR (126 MHz, CDCl3): δ 165.2, 164.9, 137.4, 133.4, 133.3, 129.8 (×2), 129.5, 129.3, 128.5 (×2), 128.4, 128.1, 127.9, 99.4, 83.3, 78.4, 76.5, 72.4, 70.8, 69.5, 67.8, 67.6, 64.2, 63.5, 25.6, 18.6, 18.4, 14.9 ppm; HRMS (ESI): m/z calcd for C35H38N6O8SNa [M+Na]+: 725.2364. found: 725.2350.
Ethyl 4-azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-1-thio-α-D-mannopyranoside (64)
A mixture of glycosyl donor 62 (1.980 g, 3.76 mmol), glycosyl acceptor 13 (1.106 g, 3.42 mmol), and freshly activated molecular sieves (3 Å, 4.0 g) in CH2Cl2 (30 mL) was stirred under argon for 5 h at room temperature. TMSOTf (0.136 mL, 0.753 mmol) was added and the resulting mixture was stirred for additional 1 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×30 mL). The combined filtrate ( ̃120 mL) was washed with 20% aq. NaHCO3 (50 mL), water (50 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (2.010 g, 85%) as a white foam. Analytical data for 64: Rf=0.50 (ethyl acetate/hexane, 1/9, v/v); [α]D21=+50.0 (c=1.4, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.21-8.11 (m, 15H, H—Ar), 5.63 (dd, J2,3=2.5 Hz, 1H, H-2B), 5.22 (d, J1,2=1.0 Hz, 1H, H-1A), 4.95 (d, J1,2=1.7 Hz, 1H, H-1B), 2.50-2.69 (m, 2H, S—CH2—), 1.37 (d, J5,6=6.2 Hz, 3H, H-6B), 1.33 (d, J5,6=6.2 Hz, 3H, H-6A), 1.28 ppm (t, J=7.3 Hz, 3H, S—CH2—CH3); 13C NMR (126 MHz, CDCl3): δ 165.3, 137.3, 137.1, 133.3, 129.9, 129.7, 128.6, 128.5, 128.4 (×2), 128.2, 128.1, 127.9, 99.6, 83.3, 78.1, 76.6, 75.3, 72.3, 71.4, 67.7, 67.6, 64.4, 64.1, 25.6, 18.7, 18.5, 14.9 ppm; HRMS (ESI): m/z calcd for C35H40N6O7SNa [M+Na]+: 711.2571. found: 711.2570.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (67)
A mixture of glycosyl donor 53 (0.292 g, 0.540 mmol), glycosyl acceptor 65 (Saksena et al. (2008) Carbohydr. Res. 343, 1693-1706) (0.200 g, 0.491 mmol) and freshly activated molecular sieves (3 Å, 0.6 g) in CH2Cl2 (8 mL) was stirred under argon for 5 h at room temperature. TMSOTf (20 μL, 0.108 mmol) was added and the resulting mixture was stirred for an additional hour. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (80 mL) was washed with 20% aq. NaHCO3 (40 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.374 g, 97%) as a white foam. Analytical data for 67: Rf=0.40 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=−41.2 (c=1.6, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.29-8.06 (m, 15H, H—Ar), 5.72 (dd, J2,3=3.3 Hz, 1H, H-2B), 5.66 (dd, J3,4=10.3 Hz, 1H, H-3B), 5.29 (d, J1,2=1.8 Hz, 1H, H-1B), 4.82 (d, J1,2=1.8 Hz, 1H, H-1A), 4.73 3.66 (s, 3H, —OCH3), 1.37 (d, J5,6=6.0 Hz, 3H, H-6B), 1.36 (d, J5,6=6.0 Hz, 3H, H-6A); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 165.1, 137.6, 133.5, 133.3, 129.8, 129.4, 129.3, 128.6, 128.5, 128.4, 127.9, 127.6, 99.2, 97.0, 78.6, 72.5, 70.7, 70.0, 67.7, 67.6 (×2), 64.7, 63.4, 51.5, 33.9, 29.0, 25.7, 24.6, 18.6, 18.5 ppm; HRMS (ESI): m/z calcd for C40H46N6O11Na [M+Na]+: 809.3117. found: 809.3107.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (68)
A mixture of glycosyl donor 63 (0.151 g, 0.216 mmol), glycosyl acceptor 65 (Saksena et al. (2008) Carbohydr. Res. 343, 1693-1706) (0.080 g, 0.196 mmol) and freshly activated molecular sieves (3 Δ, 0.5 g) in CH2Cl2 (4 mL) was stirred under argon for 5 h at room temperature. MeOTf (133 μL, 1.17 mmol) was added and stirring was continued for additional 48 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (70 mL) was washed with 20% aq. NaHCO3 (40 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.182 g, 89%) as a white foam. Analytical data for 68: Rf=0.40 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=−27.7 (c=2.4, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.06-8.01 (m, 20H, H—Ar), 5.71 (dd, J2,3=3.3 Hz, 1H, H-2C), 5.58 (dd, J3,4=10.4 Hz, 1H, H-3C), 5.07 (s, 2H, H-1B, H-1C), 4.78 (d, J1,2=1.5 Hz, 1H, H-1A), 1.46 (d, J5,6=6.2 Hz, 3H, H-6C), 1.34 (d, J5,6=6.5 Hz, 3H, H-6B), 1.32 ppm (d, J5,6=6.2 Hz, 3H, H-6A); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 164.9, 137.6, 137.4, 133.4, 133.2, 129.8, 129.7, 129.5, 129.3, 128.5 (×2), 128.4, 128.2, 127.9, 127.8, 127.7, 127.6, 101.0, 99.2, 97.0, 78.2, 77.8, 73.4, 72.6, 72.1, 70.9, 69.3, 68.2, 67.7, 67.3, 64.9, 63.7, 63.4, 51.5, 33.9, 29.0, 25.7, 24.6, 18.6 (×2), 18.5 ppm; HRMS (ESI): m/z calcd for C53H61N9O14Na [M+Na]+: 1070.4230. found: 1070.4233.
5′-Methoxycarbonylpentyl 4-azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (69)
A mixture of glycosyl donor 53 (0.168 g, 0.318 mmol), glycosyl acceptor 66 Saksena et al. (2005) Tetrahedron: Asymmetry 16, 187-197) (0.118 g, 0.289 mmol) and freshly activated molecular sieves (3 Å, 0.350 g) in PhMe (3 mL) was stirred under argon for 2 h at room temperature. Then it was heated to 95° C. and TMSOTf (12 μL, 0.064 mmol) was added, and the mixture stirred for additional 1 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×30 mL). The combined filtrate (100 mL) was washed with 20% aq. NaHCO3 (50 mL), water (30 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.203 g, 91%) as a white foam. Analytical data for 69: Rf=0.40 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=−4.4 (c=1.2, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.00-8.06 (m, 15H, H—Ar), 5.30 (dd, J3,4=9.9 Hz, 1H, H-3B), 5.07 (d, J1,2=1.7 Hz, 1H, H-1B), 4.70 (d, J1,2=1.8 Hz, 1H, H-1A), 3.69 (s, 3H, —OCH3), 1.39 (d, J=5.9 Hz, 3H, H-6A), 1.34 ppm (d, J=5.7 Hz, 3H, H-6B); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.4, 137.4, 137.3, 133.2, 129.8, 129.5, 128.5, 128.4, 128.2, 128.1, 127.8, 127.6, 99.1, 98.8, 78.6, 74.4, 73.3, 72.8, 72.6, 72.5, 67.6, 67.4, 67.3, 64.3, 63.1, 51.5, 33.9, 29.1, 25.7, 24.7, 18.5 (×2) ppm; HRMS (ESI): m/z calcd for C40H48N6O10Na [M+Na]+: 795.3324. found: 795.3314.
5′-Methoxycarbonylpentyl 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (70)
Sodium methoxide ( ̃0.5 mL, 0.5 M solution) was added to a solution of 69 (0.910 g, 1.178 mmol) in CH3OH (20 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.755 g, 96%) as oil. Analytical data for 70: Rf=0.50 (ethyl acetate/toluene, 1/9, v/v); [α]D21=+43.2 (c=1.2, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.11-7.41 (m, 10H, H—Ar), 5.11 (d, J1,2=1.3 Hz, 1H, H-1B), 4.65 (d, J1,2=2.0 Hz, 1H, H-1A), 3.68 (s, 3H, —OCH3), 1.30 (d, J5,6=6.5 Hz, 3H, H-6A), 1.29 ppm (d, J5,6=6.2 Hz, 3H, H-6B); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.3, 137.1, 128.6, 128.5, 128.2, 128.1, 128.0, 98.8, 97.9, 78.5, 76.5, 72.9, 72.6, 72.1, 69.8, 67.5, 67.2, 67.1, 66.4, 64.6, 51.5, 33.9, 29.0, 25.7, 24.7, 18.5, 18.4 ppm; HRMS (ESI): m/z calcd for C33H44N6O9Na [M+Na]+: 691.3062. found: 691.3054.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (71)
A mixture of glycosyl donor 53 (0.124 g, 0.230 mmol), glycosyl acceptor 70 (0.140 g, 0.210 mmol) and freshly activated molecular sieves (3 Å, 0.5 g) in CH2Cl2 (4 mL) was stirred under argon for 5 h at room temperature. TMSOTf (8 μL, 0.046 mmol) was added and the resulting mixture was stirred for an additional hour. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (80 mL) was washed with 20% aq. NaHCO3 (50 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.210 g, 96%) as a white foam. Analytical data for 71: Rf=0.40 (ethyl acetate/toluene, 0.5/9.5, v/v); [M]D21=−29.0 (c=1.2, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.22-8.07 (m, 20H, H—Ar), 5.70 (dd, J2,3=3.4 Hz, 1H, H-2C), 5.59 (dd, J3,4=9.8 Hz, 1H, H-3C), 5.26 (d, J1,2=1.8 Hz, 1H, H-1C), 5.10 (d, J1,2=1.6 Hz, 1H, H-1B), 4.67 (d, J1,2=1.8 Hz, 1H, H-1A), 3.68 (s, 3H, —OCH3), 1.35 (d, J5,6=6.0 Hz, 3H, H-6C), 1.29 (d, J5,6=6.0 Hz, 3H, H-6A), 1.28 ppm (d, J5,6=6.0 Hz, 3H, H-6B); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 165.0, 137.4, 137.3, 133.4, 133.2, 129.8 (×2), 129.4, 129.3, 128.6, 128.5 (×2), 128.3, 128.2, 128.1, 127.8, 127.6, 99.1, 98.8, 98.4, 78.4, 77.6, 76.1, 73.4, 72.4, 71.8, 70.7, 69.8, 68.2, 67.7, 67.5, 67.1, 64.7, 64.5, 63.3, 51.5, 33.9, 29.0, 25.7, 24.7, 18.6 (×2), 18.5 ppm; HRMS (ESI): m/z calcd for C53H61N9O14Na [M+Na]+: 1070.4230. found: 1070.4249.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (72)
A mixture of glycosyl donor 63 (0.208 g, 0.296 mmol), glycosyl acceptor 70 (0.180 g, 0.269 mmol) and freshly activated molecular sieves (3 Å, 0.5 g) in CH2Cl2 (4 mL) was stirred under argon for 4 h at room temperature. MeOTf (213 μL, 1.88 mmol) was added and continued stirring for additional 48 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (70 mL) was washed with 20% aq. NaHCO3 (40 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.321 g, 91%) as a white foam. Analytical data for 72: Rf=0.30 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=−17.9 (c=1.0, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.05-8.00 (m, 25H, H—Ar), 5.71 (dd, J2,3=3.3 Hz, 1H, H-2D), 5.58 (dd, J3,4=10.3 Hz, 1H, H-3D), 5.09 (d, J1,2=1.5 Hz, 1H, H-1B), 5.07 (d, J1,2=1.6 Hz, 1H, H-1C), 5.04 (d, J1,2=1.6 Hz, 1H, H-1D), 1.31-1.35 (m, 6H, H-6A, H-6B), 1.26 ppm (d, J5,6=6.2 Hz, 3H, H-6C); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 164.8, 137.5, 137.4, 137.3, 133.3, 133.2, 129.8, 129.7, 129.5, 129.3, 128.5 (×2), 128.4, 128.3, 128.2, 128.0, 127.8 (×2), 127.7, 127.6, 100.8, 99.2, 98.8, 98.3, 78.4, 77.9, 77.4, 76.4, 73.7, 73.2, 72.5, 72.1, 71.9, 70.9, 69.3, 68.1, 67.9, 67.7, 67.5, 67.2, 64.6, 63.6, 63.4, 51.5, 33.9, 29.1, 25.7, 24.7, 18.6 (×2), 18.5 ppm; HRMS (ESI): m/z calcd for C66H76N12O17Na [M+Na]+: 1331.5344. found: 1331.5341.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (67a)
Sodium methoxide (0.2 mL, 0.5 M solution) was added to a solution of 67 (0.350 g, 0.445 mmol) in CH3OH (5 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.221 g, 86%) as a white foam. Analytical data for 67a: Rf=0.50 (CH3OH/CH2Cl2, 0.5/9.5, v/v); [α]D21=+73.4 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.28-7.41 (m, 5H, H—Ar), 5.07 (s, 1H, H-1B), 4.78 (s, 1H, H-1A), 1.32 (d, J5,6=6.2 Hz, 3H, H-6A), 1.27 ppm (d, J5,6=6.2 Hz, 3H, H-6B); 13C NMR (126 MHz, CDCl3): δ 174.1, 137.6, 128.5, 127.9, 127.6, 101.5, 96.9, 78.3, 76.9, 72.4, 70.3, 70.2, 67.7, 67.5, 67.3, 65.7, 64.7, 51.5, 33.9, 29.0, 25.7, 24.6, 18.5, 18.3 ppm; HRMS (ESI): m/z calcd for C26H38N6O9Na [M+Na]+: 601.2592. found: 601.2581.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (44)
To a stirred solution of 67a (0.150 g, 0.259 mmol), in a pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and then stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 67b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C26H43N2O9 [M+H]+: 527.2963. found: 527.2964. This crude material was directly used for formylation.
Compound 67b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydride22 (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 67c. HRMS (ESI): m/z calcd for C28H42N2NaO11 [M+Na]+: 605.2681. found: 605.2675.
Compound 67c was dissolved in CH3OH/H2O (2:1, 6 mL), Pd(OH)2 on carbon (20%, 0.050 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford the title compound (0.075 g, 59%, over 3 steps) as a white foam. Analytical data for 44: Rf=0.20 (CH3OH/CH2Cl2, 1.5/8.5, v/v); 1H NMR (700 MHz, D2O): δ 8.21 ((d, J=15.4 Hz) and 8.03 (d, J=13.3 Hz), 2H, NCHO), 4.81-4.95 (m, 2H, 2×H-1), 3.70 (s, 3H, —OCH3), 1.20-1.30 ppm (m, 6H, 2×H-6); 13C NMR (126 MHz, D2O): δ 178.5, 168.9, 168.8, 165.8, 165.7, 103.3, 103.2, 100.6, 100.5, 77.8 (×2), 70.2, 70.0, 69.9 (×2), 69.0, 68.9 (×2), 68.8 (×2), 68.6, 68.4, 68.2, 67.8, 57.6, 56.5, 53.1, 52.7, 52.6, 51.6, 34.6, 29.1, 25.9, 25.0, 17.8, 17.7, 17.6 ppm; HRMS (ESI): m/z calcd for C21H36N2O11Na [M+Na]+: 515.2211. found: 515.2210.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (81)
A solution of 44 (0.009 g, 0.018 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on C18 column in gradient water-acetonitrile and lyophilized, to give the title compound (0.0075 g, 79%) as a white foam. Analytical data for 81: Rf=0.15 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (700 MHz, D2O): δ 8.19-8.22 (Z) and 8.01-8.02 (E) (m, 2H, NCHO), 4.80-4.95 (m, 2H, 2×H-1), 1.19-1.30 ppm (m, 6H, 2×H-6); 13C NMR (126 MHz, D2O): δ 178.4, 168.9, 168.8, 165.8, 165.7, 103.6, 103.3 (×2), 100.6, 100.5, 77.8, 77.4, 71.1, 70.4, 70.2, 70.0, 69.8, 69.0, 68.9, 68.8 (×3), 68.6, 68.4, 68.2, 67.8, 57.6, 56.5, 54.5, 52.6, 51.8, 51.6, 41.7, 41.4, 40.9, 40.7, 36.7, 29.2, 26.0, 25.9, 17.9, 17.8, 17.7 (×2) ppm; HRMS (ESI): m/z calcd for C22H40N4O10Na [M+Na]+: 543.2637. found: 543.2642.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (87)
To a stirred solution of 81 (0.0075 g, 0.014 mmol) in water (0.5 mL) and EtOH (0.4 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 70 μL) was added and the pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0089 g, 92%) as a white foam. Analytical data for 87: Rf=0.20 (CH3OH/CH2Cl2, 1.5/8.5, v/v); 1H NMR (500 MHz, D2O): δ 8.26-8.30 (Z) and 8.09-8.12 (E) (m, 2H, NCHO), 4.83-5.03 (m, 2H, 2×H-1), 1.26-1.37 (m, 6H, 2×H-6), 0.99-1.05 ppm (m, 3H, —CH31); 13C NMR (126 MHz, D2O): δ 189.8, 189.6, 184.3 (×2), 178.5, 178.1, 178.0, 177.9, 174.8, 174.7, 168.9, 168.8, 165.8, 165.7, 103.3, 103.2, 100.5 (×2), 77.8, 75.4, 75.3, 70.2, 70.0, 69.9, 69.0, 68.9 (×2), 68.8, 68.7, 68.6, 68.4, 68.2, 67.7, 57.6, 56.5, 52.7, 52.6, 51.7, 45.2, 45.0, 40.3, 40.2, 36.7, 32.4, 31.2, 29.3 (×2), 26.2, 26.1, 25.9 (×2), 19.1, 19.0, 17.8 (×2), 17.7, 13.9 ppm; HRMS (ESI): m/z calcd for C30H48N4O13Na [M+Na]+: 695.3110. found: 695.3113.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (68a)
Sodium methoxide (0.2 mL, 0.5 M solution) was added to a solution of 68 (0.352 g, 0.336 mmol) in CH3OH (5 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.256 g, 91%) as an off-white foam. Analytical data for 68a: Rf=0.30 (ethyl acetate/toluene, 1/4, v/v); [α]D21=+72.4 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.27-7.39 (m, 10H, H—Ar), 5.02 (s, 1H, H-1B), 4.93 (s, 1H, H-1C), 4.77 (s, 1H, H-1A), 3.67 (s, 3H, —OCH3), 1.24 ppm (d, J5,6=6.2 Hz, 3H, H-6C); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.6, 137.4, 128.6, 128.5, 128.1, 127.9, 127.5, 101.0 (×2), 97.0, 78.3, 77.8, 73.1, 72.5, 72.1, 70.2, 69.9, 67.9, 67.6, 67.4, 67.3, 65.8, 64.8, 64.0, 51.5, 33.9, 29.0, 25.6, 24.6, 18.6, 18.5, 18.3 ppm; HRMS (ESI): m/z calcd for C39H53N9O12Na [M+Na]+: 862.3706. found: 862.3691.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (44)
To a stirred solution of 68a (0.114 g, 0.136 mmol), in pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and then stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 68b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C39H60N3O12 [M+H]+: 762.4172. found: 762.4171. This crude material was directly used for formylation.
Compound 68b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydrid22 (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 68c. HRMS (ESI): m/z calcd for C42H59N3O15Na [M+Na]+: 868.3838. found: 868.3827.
Compound 68c was dissolved in CH3OH/H2O (2:1, 5 mL), Pd(OH)2 on carbon (20%, 0.040 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford the title compound (0.046 g, 51%, over 3 steps) as a white foam. Analytical data for 45: Rf=0.40 (CH3OH/CH2Cl2, 3/7, v/v); 1H NMR (700 MHz, D2O): a 8.20-8.24 (Z) and 8.02-8.06 (E) (m, 3H, NCHO), 4.82-5.08 (m, 3H, 3×H-1), 1.21-1.32 ppm (m, 9H, 3×H-6); 13C NMR (126 MHz, D2O): δ 178.5, 168.8, 168.7, 165.8 (×2), 165.6 (×2), 103.4, 103.3, 102.9, 101.8, 101.7, 100.6, 100.5, 79.0 (×2), 78.9, 78.2, 78.0, 77.7 (×3), 70.0, 69.9, 69.8, 69.4, 69.2, 69.0, 68.9 (×2), 68.8 (×2), 68.7, 68.6 (×2), 68.5 (×2), 68.3 (×2), 67.9, 67.7, 57.8, 57.7, 56.4, 53.1, 52.8, 52.7, 51.9, 34.6, 29.1, 25.9, 25.0, 18.1, 17.9 (×3), 17.8, 17.7 ppm; HRMS (ESI): m/z calcd for C28H47N3O15Na [M+Na]+: 688.2899. found: 688.2895.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (82)
A solution of 45 (0.012 g, 0.018 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0112 g, 90%) as a white foam. Analytical data for 82: Rf=0.10 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (500 MHz, D2O): δ 8.26-8.31 (Z) and 8.08-8.13 (E) (m, 3H, NCHO), 4.88-5.16 (m, 3H, 3×H-1), 1.20-1.37 (m, 9H, 3×H-6); 13C NMR (126 MHz, D2O): δ 178.4, 178.2, 168.8 (×2), 165.9, 165.8, 165.6 (×3), 103.3 (×2), 101.7 (×2), 100.5 (×2), 79.0, 77.7, 70.0, 69.9, 69.2, 69.0, 68.9, 68.8, 68.6, 68.4, 68.0, 67.7, 57.8, 57.7, 52.8, 52.7, 51.9, 41.5 (×2), 41.5, 41.4, 40.9, 40.6 (×2), 36.6, 29.2, 26.0 (×2), 25.9, 25.8, 18.1, 18.0, 17.9 (×3), 17.7 ppm; HRMS (ESI): m/z calcd for C29H51N5O14Na [M+Na]+: 716.3325. found: 716.3311.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (88)
To a stirred solution of 82 (0.0075 g, 0.011 mmol) in water (0.5 mL) and EtOH (0.4 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 50 μL) was added and the pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0065 g, 71%) as a white foam. Analytical data for 88: Rf=0.20 (CH3OH/CH2Cl2, 1/4, v/v); 1H NMR (500 MHz, D2O): δ 8.27-8.31 (Z) and 8.08-8.13 (E) (m, 3H, NCHO), 4.86-5.15 (m, 3H, 3×H-1), 1.26-1.36 (m, 9H, 3×H-6), 0.98-1.05 ppm (m, 3H, —CH31); 13C NMR (126 MHz, D2O): δ 189.8, 189.6, 184.3 (×2), 178.5, 178.1, 178.0, 177.9, 174.8, 174.7, 168.8, 168.7, 165.8 (×2), 165.6, 103.4, 103.3, 102.9, 101.8, 101.7, 100.6, 100.5, 79.0, 78.9, 78.8, 78.2, 78.0, 77.7 (×2), 75.4, 75.3, 70.0, 69.9, 69.3, 69.2, 69.0, 68.9, 68.9, 68.8, 68.6, 68.5 (×2), 68.4, 68.3, 67.9, 67.7, 57.8, 57.7, 56.5, 52.8, 52.8, 52.7, 51.9, 45.2, 45.0, 40.3, 40.2, 36.7, 32.4, 29.3 (×2), 26.2, 26.1, 25.9 (×2), 19.1, 19.0, 18.1, 18.0, 17.9 (×3), 17.7, 13.9 ppm; HRMS (ESI): m/z calcd for C37H59N5O17Na [M+Na]+: 868.3798. found: 868.3800.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (71a)
Sodium methoxide (0.5 mL, 0.5 M solution) was added to a solution of 71 (0.458 g, 0.437 mmol) in CH3OH (10 mL) until pH −9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.341 g, 93%) as oil. Analytical data for 71a: Rf=0.30 (ethyl acetate/toluene, 1/4, v/v); [α]D21=+58.9 (c=1.3, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.12-7.39 (m, 10H, H—Ar), 5.08 (d, J1,2=1.8 Hz, 1H, H-1B), 5.05 (d, J1,2=1.6 Hz, 1H, H-1C), 4.66 (d, J1,2=1.6 Hz, 1H, H-1A), 3.68 (s, 3H, —OCH3), 1.28-1.32 (m, 6H, H-6A, H-6B), 1.19 ppm (d, J5,6=6.2 Hz, 3H, H-6C); 13C NMR (126 MHz, CDCl3): δ 174.1, 137.3 (×2), 128.5, 128.4, 128.2, 128.1, 127.8, 127.6, 101.5, 98.8, 98.1, 78.4, 77.5, 76.4, 73.2, 72.6, 71.7, 70.1, 70.0, 67.9, 67.5, 67.4, 67.2, 65.5, 64.7, 64.4, 51.5, 33.9, 29.0, 25.7, 24.6, 18.6, 18.5, 18.2 ppm; HRMS (ESI): m/z calcd for C39H53N9O12Na [M+Na]+: 862.3706. found: 862.3700.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (46)
To a stirred solution of 71a (0.157 g, 0.187 mmol), in pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and then stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 71b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C39H60N3O12 [M+H]+: 762.4172. found: 762.4182. This crude material was directly used for formylation.
Compound 71b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydride22 (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 71c. HRMS (ESI): m/z calcd for C42H59N3O15Na [M+Na]+: 868.3838. found: 868.3834.
Compound 71c was dissolved in CH3OH/H2O (2:1, 5 mL), Pd(OH)2 on carbon (20%, 0.050 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford the title compound (0.053 g, 43%, over 3 steps) as a white foam. Analytical data for 46: Rf=0.50 (CH3OH/CH2Cl2, 3/7, v/v); 1H NMR (700 MHz, D2O): δ 8.20-8.24 (Z) and 8.02-8.06 (E) (m, 3H, NCHO), 4.92-5.04 (m, 3H, 3×H-1), 3.70 (s, 3H, —OCH3), 1.22-1.31 ppm (m, 9H, 3×H-6); 13C NMR (176 MHz, D2O): δ 178.3, 168.7, 168.6, 168.5, 165.6 (×2), 165.5, 103.1, 102.9 (×2), 102.8, 102.7 (×2), 99.0 (×3), 78.6 (×2), 78.5, 77.3, 77.2, 77.1, 70.1, 70.0, 69.8, 69.5, 69.4, 68.9, 68.8 (×2), 68.7 (×2), 68.6 (×2), 68.5 (×2), 68.4 (×2), 68.3, 68.2, 67.8, 57.7, 57.4, 56.3, 52.9, 52.8, 52.4, 51.3, 34.4, 28.9, 25.7, 24.8, 17.6 (×2), 17.5, 17.4 ppm; HRMS (ESI): m/z calcd for C28H47N3O15Na [M+Na]+: 688.2899. found: 688.2893.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (83)
A solution of 46 (0.010 g, 0.015 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0084 g, 81%) as a white foam. Analytical data for 83: Rf=0.10 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (500 MHz, D2O): δ 8.26-8.31 (Z) and 8.09-8.13 (E) (m, 3H, NCHO), 4.98-5.11 (m, 3H, 3×H-1), 1.26-1.38 ppm (m, 9H, 3×H-6); 13C NMR (126 MHz, D2O): δ 177.7, 177.2, 168.0, 167.9, 167.8, 164.9, 164.8, 164.6, 102.4, 102.2 (×2), 102.1, 101.9 (×2), 98.3, 98.2, 77.9, 77.8 (×3), 76.8, 76.5 (×2), 76.4, 76.2, 70.0, 69.9, 69.5, 69.3, 69.0, 68.8 (×2), 68.7, 68.2, 68.1, 68.0 (×2), 67.9, 67.8 (×2), 67.7, 67.6 (×2), 67.5, 67.1, 57.0, 56.7, 55.5, 53.5, 52.0, 51.7 (×2), 51.6, 50.7, 50.6 (×2), 40.4, 39.9, 39.5, 39.0, 35.7, 35.6, 28.2, 25.1, 24.9 (×2), 17.0, 16.9, 16.7 (×2) ppm; HRMS (ESI): m/z calcd for C29H51N5O14Na [M+Na]+: 716.3325. found: 716.3322.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (89)
To a stirred solution of 83 (0.0074 g, 0.0106 mmol) in water (0.5 mL) and EtOH (0.4 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 50 μL) was added and pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0072 g, 80%) as a white foam. Analytical data for 89: Rf=0.20 (CH3OH/CH2Cl2, 1/4, v/v); 1H NMR (500 MHz, D2O): δ 8.16-8.21 (Z) and 7.99-8.03 (E) (m, 3H, NCHO), 4.87-5.01 (m, 3H, 3×H-1), 1.18-1.27 (m, 9H, 3×H-6); 13C NMR (126 MHz, D2O): δ 189.8, 189.6, 184.2, 178.5, 178.0, 177.9 (×2), 174.8, 174.7, 168.8, 168.7, 166.6, 165.8, 165.7, 103.1, 102.8, 99.1 (×2), 78.7, 77.4 (×2), 75.4, 75.3, 70.2, 69.7, 69.6, 69.1, 69.0, 68.9, 68.7 (×3), 68.5, 68.4, 53.0, 52.6, 51.5, 45.1, 44.9, 40.3, 40.1, 36.7, 32.4, 29.2, 26.1, 26.0, 25.9 (×2), 19.0 (×2), 17.8 (×3), 17.6, 13.9 ppm; HRMS (ESI): m/z calcd for C37H59N5O17Na [M+Na]+: 868.3798. found: 868.3791.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (72a)
Sodium methoxide (0.5 mL, 0.5 M solution) was added to a solution of 72 (0.391 g, 0.299 mmol) in CH3OH/THF mixture (4:1, 15 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 5 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.311 g, 95%) as oil. Analytical data for 72a: Rf=0.40 (ethyl acetate/toluene, 1/4, v/v); [α]D21=+51.2 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.10-7.39 (m, 15H, H—Ar), 5.07 (d, J1,2=1.6 Hz, 1H, H-1B), 5.02 (d, J1,2=1.6 Hz, 1H, H-1C), 4.91 (d, J1,2=1.5 Hz, 1H, H-1D), 4.66 (d, J1,2=2.0 Hz, 1H, H-1A), 3.68 (s, 3H, —OCH3), 1.26-1.35 (m, 9H, H-6A, H-6B H-6C), 1.17 ppm (d, J5,6=5.9 Hz, 3H, H-6D); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.5, 137.4, 137.3, 128.5, 128.4, 128.2, 128.0 (×2), 127.8, 127.5, 101.0, 100.8, 98.8, 98.2, 78.4, 77.9, 77.5, 76.4, 73.2, 72.5, 72.1, 71.8, 70.0, 69.7, 67.9 (×2), 67.5 (×2), 67.1, 65.8 (×2), 64.7, 64.6, 63.9, 51.5, 33.9, 29.0, 25.7, 24.7, 18.6 (×2), 18.5, 18.3 ppm; HRMS (ESI): m/z calcd for C52H68N12O15Na [M+Na]+: 1123.4806. found: 1123.4812.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (47)
To a stirred solution of 72a (0.146 g, 0.132 mmol), in pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and then stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 72b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C52H77N4O15 [M+H]+: 997.5380. found: 997.5366. This crude material was directly used for formylation.
Compound 72b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydride Olah et al. (Angew (1979) Chem. Int. Ed. 18, 614) (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 72c. HRMS (ESI): m/z calcd for C56H76N4O19Na [M+Na]+: 1131.4996. found: 1131.4992.
Compound 72c was dissolved in CH3OH/H2O (2:1, 5 mL), Pd(OH)2 on carbon (20%, 0.050 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol dichloromethane gradient elution) to afford the title compound (0.068 g, 61%, over 3 steps) as a white foam. Analytical data for 47: Rf=0.30 (CH3OH/CH2Cl2, 3/7, v/v); 1H NMR (500 MHz, D2O): δ 8.26-8.33 (Z) and 8.06-8.14 (E) (m, 4H, NCHO), 4.98-5.20 (m, 4H, 4×H-1), 3.85-4.28 (m, 16H, 4×H-2, 4×H-3, 4×H-4, 4×H-5), 1.28-1.39 ppm (m, 12H, 4×H-6); 13C NMR (126 MHz, D2O): δ 178.5, 168.8, 168.7, 168.6, 165.8, 165.6, 103.3, 103.2, 102.9, 102.8, 102.7, 101.9, 101.6, 99.3, 99.2, 79.3, 78.9, 78.7, 78.5, 78.4, 78.1, 77.3, 69.9 (×2), 69.8, 69.7, 69.4, 69.3, 69.0, 68.9, 68.8 (×2), 68.7, 68.6, 68.5, 68.4, 68.3, 68.0, 58.0, 57.7, 56.5, 53.1, 52.9, 52.8, 52.7, 51.8, 34.6, 29.1, 25.9, 25.0, 18.1 (×2), 18.0 (×2), 17.9 (×2), 17.8 (×2), 17.7 (×2) ppm; HRMS (ESI): m/z calcd for C35H58N4O19Na [M+Na]+: 861.3587. found: 861.3580.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (84)
A solution of 47 (0.0134 g, 0.016 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0113 g, 82%) as a white foam. Analytical data for 84: Rf=0.10 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (500 MHz, D2O): δ 8.16-8.23 (Z) and 7.98-8.05 (E) (m, 4H, NCHO), 4.84-5.10 (m, 4H, 4×H-1), 2.22-2.28 (m, 2H, —CH2f—), 1.54-1.64 (m, 4H, —CH2e—, —CH2c—), 1.30-1.41 (m, 2H, —CH2d—), 1.18-1.30 ppm (m, 12H, 4×H-6); 13C NMR (125 MHz, D2O): δ 177.4, 167.9 (×2), 164.9, 164.6, 102.6, 102.3 (×3), 101.9 (×2), 101.0 (×2), 100.8, 98.6, 98.3, 78.1, 77.6, 77.5 (×2), 76.8, 76.4, 76.0, 70.3, 70.2, 70.1, 70.0 (×2), 69.5, 69.2, 68.9 (×3), 68.3, 68.0, 67.8, 67.6 (×2), 53.9, 53.8, 53.6, 52.0, 51.8, 50.8 (×2), 40.6 (×3), 39.7, 35.7, 28.2, 25.0, 24.9 (×2), 17.3, 17.0, 16.8 (×3) ppm; HRMS (ESI): m/z calcd for C36H62N6O18Na [M+Na]+: 889.4013. found: 889.4020.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (90)
To a stirred solution of 84 (0.013 g, 0.015 mmol) in water (0.5 mL) and EtOH (0.4 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 70 μL) was added and pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.0109 g, 72%) as a white foam. Analytical data for 90: Rf=0.20 (CH3OH/CH2C2, 1/4, v/v); 1H NMR (600 MHz, D2O): δ 8.18-8.24 (Z) and 7.98-8.06 (E) (m, 4H, NCHO), 4.90-5.10 (m, 4H, 4×H-1), 1.20-1.35 (m, 14H, —CH2d—, 4×H-6) ppm; 13C NMR (126 MHz, D2O): δ 189.8, 189.6, 184.3 (×2), 178.5, 178.2, 178.1, 178.0, 177.9, 174.8, 174.7, 168.8, 168.7, 168.6, 165.8, 165.6, 103.3 (×2), 103.2, 102.8 (×2), 102.7, 101.7 (×2), 101.6 (×2), 99.2, 78.9 (×2), 78.4, 78.1, 77.3, 75.4, 75.3, 69.9 (×2), 69.8 (×2), 69.7, 69.3, 69.0 (×2), 68.9, 68.8 (×4), 68.6 (×2), 68.5, 68.4 (×2), 68.0, 62.5, 52.9, 52.8 (×2), 52.7, 51.8, 45.2, 45.0, 44.2, 40.6, 40.3, 40.2, 36.7, 34.4, 32.4, 29.2, 26.2, 26.1, 26.0 (×2), 25.9 (×2), 25.8, 19.3, 19.1, 19.0, 18.1, 18.0 (×2), 17.9, 17.8 (×2), 17.7 (×2), 14.0, 13.9 ppm; HRMS (ESI): m/z calcd for C44H70N6O21Na [M+Na]+: 1041.4486. found: 1041.4484.
5′-Methoxycarbonylpentyl 4-azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (73)
A mixture of glycosyl donor 64 (0.743 g, 1.08 mmol), glycosyl acceptor 66 Cheng. et al. (2010) Angew. Chem. Int. Ed. 49, 4771-4774) (0.400 g, 0.982 mmol) and freshly activated molecular sieves (3 Å, 1.5 g) in CH2Cl2 (10 mL) was stirred under argon for 4 h at room temperature. MeOTf (0.890 mL, 7.86 mmol) was added and stirring was continued for an additional 48 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×30 mL). The combined filtrate (100 mL) was washed with 20% aq. NaHCO3 (40 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.865 g, 85%) as oil. Analytical data for 73: Rf=0.50 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=+36.7 (c=1.3, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.15-8.11 (m, 20H, H—Ar), 5.61 (dd, J2,3=3.0 Hz, 1H, H-2C), 4.99 (d, J1,2=1.8 Hz, 1H, H-1B), 4.90 (d, J1,2=2.0 Hz, 1H, H-1C), 4.64 (s, 1H, H-1A), 3.70 (s, 3H, —OCH3), 1.30 (d, J5,6=6.0 Hz, 6H, H-6B, H-6C), 1.25 ppm (d, J5,6=6.0 Hz, 3H, H-6A); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.3, 137.4, 137.3, 137.2, 133.3, 129.9, 129.8, 128.5 (×3), 128.4, 128.3, 128.1, 128.0 (×2), 127.9, 100.4, 99.2, 98.7, 77.6, 76.7, 75.4, 74.2, 74.1, 72.2, 72.1, 71.4, 67.7 (×2), 67.5, 67.1, 64.4, 64.1 (×2), 51.5, 33.9, 29.1, 25.7, 24.7, 18.7, 18.6 ppm; HRMS (ESI): m/z calcd for C53H63N9O13Na [M+Na]+: 1056.4438. found: 1056.4436.
5′-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (74)
Sodium methoxide (0.7 mL, 0.5 M solution) was added to a solution of 73 (0.855 g, 0.827 mmol) in CH3OH (10 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.720 g, 94%) as oil. Analytical data for 74: Rf=0.30 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=+94.4 (c=1.1, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.29-7.45 (m, 15H, H—Ar), 4.95 (br. s., 2H, H-1B, H-1C), 4.63 (d, J1,2=2.0 Hz, 1H, H-1A), 3.70 (s, 3H, —OCH3), 1.28-1.31 (m, 6H, H-6B, H-6C), 1.21 ppm (d, J5,6=6.2 Hz, 3H, H-6A); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.4, 137.3, 137.1, 128.6 (×2), 128.3 (×2), 128.2 (×3), 128.1, 100.5 (×2), 98.7, 77.6, 77.5, 76.9, 74.0, 73.3, 72.2, 72.1 (×2), 67.7, 67.5, 67.3, 67.2, 67.1, 64.4, 64.2, 63.8, 51.5, 33.9, 29.0, 25.7, 24.7, 18.6 (×2), 18.3 ppm; HRMS (ESI): m/z calcd for C46H59N9O12Na [M+Na]+: 952.4175. found: 952.4176.
5′-Methoxycarbonylpentyl 4-azido-2-O-benzoyl-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (75)
A mixture of glycosyl donor 64 (0.262 g, 0.381 mmol), glycosyl acceptor 74 (0.322 g, 0.346 mmol) and freshly activated molecular sieves (3 Å, 0.5 g) in CH2C2 (8 mL) was stirred under argon for 4 h at room temperature. MeOTf (320 μL, 2.77 mmol) was added and stirring was continued for an additional 48 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (70 mL) was washed with 20% aq. NaHCO3 (40 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.461 g, 86%) as a white foam. Analytical data for 75: Rf=0.30 (ethyl acetate/toluene, 0.5/9.5, v/v); [c]D21=+52.7 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.16-8.09 (m, 30H, H—Ar), 5.60 (dd, J2,3=3.1 Hz, 1H, H-2E), 4.98 (d, J1,2=1.8 Hz, 1H, H-1D), 4.92 (d, J1,2=1.8 Hz, 1H, H-1E), 4.88 (d, J1,2=2.0 Hz, 1H, H-1C), 4.86 (d, J1,2=2.0 Hz, 1H, H-1B), 1.23-1.29 (m, 9H, H-6B, H-6C H-6D), 1.19 (d, J5,6=6.2 Hz, 3H, H-6E), 1.15 ppm (d, J5,6=6.2 Hz, 3H, H-6A); 13C NMR (126 MHz, CDCl3): δ 173.9, 165.3, 137.4, 137.3, 137.1 (×2), 133.3, 129.9, 129.8, 128.7, 128.6 (×3), 128.5 (×2), 128.4 (×2), 128.3 (×3), 128.2 (×2), 128.1 (×3), 127.9 (×2), 100.4, 100.2, 100.1, 99.2, 98.6, 77.4, 76.6, 75.3, 74.1, 74.0, 73.6, 72.2 (×2), 72.1 (×2), 71.3, 67.8 (×2), 67.7 (×2), 67.5, 67.1, 64.4, 64.3, 64.2, 64.1 (×2), 51.5, 33.9, 29.0, 25.7, 24.7, 18.6, 18.5 (×2) ppm; HRMS (ESI): m/z calcd for C79H93N15O19Na [M+Na]+: 1578.6664. found: 1578.6667.
5′-Methoxycarbonylpentyl 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (76)
Sodium methoxide (0.8 mL, 0.5 M solution) was added to a solution of 75 (0.450 g, 0.289 mmol) in CH3OH (10 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.395 g, 94%) as oil. Analytical data for 76: Rf=0.40 (ethyl acetate/toluene, 1/9, v/v); [α]D21=+81.2 (c=1.0, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.28-7.41 (m, 25H, H—Ar), 4.97 (d, J1,2=1.1 Hz, 1H, H-1E), 4.96 (d, J1,2=1.5 Hz, 1H, H-1D), 4.87 (d, J1,2=1.3 Hz, 1H, H-1C), 4.85 (d, J1,2=1.3 Hz, 1H, H-1B), 1.14-1.26 ppm (m, 15H, H-6A, H-6B, H-6C, H-6D, H-6E); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.3 (×2), 137.2, 137.1 (×2), 128.6 (×4), 128.4 (×2), 128.3 (×3), 128.2 (×2), 128.1 (×2), 100.5, 100.4, 100.2 (×2), 98.6, 77.7, 77.4, 76.6, 76.5, 74.0, 73.6, 73.5, 73.3, 72.2 (×2), 72.1 (×2), 67.8, 67.7, 67.5, 67.3, 67.1 (×2), 64.4, 64.2, 63.8, 51.5, 33.9, 29.0, 25.7, 24.7, 18.6 (×2), 18.5 (×2), 18.3 ppm; HRMS (ESI): m/z calcd for C72H89N5O18Na [M+Na]+: 1474.6402. found: 1474.6406.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (77)
A mixture of glycosyl donor 53 (0.158 g, 0.292 mmol), glycosyl acceptor 76 (0.3 86 g, 0.266 mmol) and freshly activated molecular sieves (3 Å, 0.5 g) in CH2Cl2 (5 mL) was stirred under argon for 5 h at room temperature. TMSOTf (11 μL, 0.058 mmol) was added and the resulting mixture was stirred for an additional hour. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×20 mL). The combined filtrate (80 mL) was washed with 20% aq. NaHCO3 (50 mL), water (30 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.487 g, 90%) as a white foam. Analytical data for 77: Rf=0.70 (ethyl acetate/toluene, 1/9, v/v); [α]D21=+31.7 (c=1.4, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.13-8.03 (m, 35H, H—Ar), 5.70 (dd, J2,3=3.3 Hz, 1H, H-2F), 5.59 (dd, J3,4=10.2 Hz, 1H, H-3F), 5.02-5.03 (m, 2H, H-1E, H-1), 4.90 (dd, J1,2=1.8 Hz, 1H, H-1D), 4.88 (dd, J1,2=1.8 Hz, 1H, H-1C), 4.86 (dd, J1,2=1.8 Hz, 1H, H-1B), 1.14-1.31 ppm (m, 18H, H-6A, H-6B, H-6C, H-6D, H-6E, H-6F); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 164.9, 137.4, 137.3, 137.1 (×3), 133.4, 133.2, 129.8, 129.7, 129.5, 129.3, 129.0, 128.7, 128.6 (×3), 128.5 (×2), 128.4 (×3), 128.3 (×2), 128.2, 128.1 (×2), 127.9 (×3), 100.4, 100.3, 100.1, 100.0, 98.9, 98.6, 77.4, 77.1, 76.6, 76.5, 74.0, 73.8, 73.6, 73.5, 73.0, 72.3 (×2), 72.2 (×2), 72.1, 70.9, 69.4, 68.1, 67.9, 67.8 (×2), 67.6, 67.5, 67.1, 64.4, 64.3, 64.2 (×2), 63.9, 63.4, 51.5, 33.9, 29.0, 25.7, 24.7, 18.6 (×2), 18.5 (×2), 18.4 ppm; HRMS (ESI): m/z calcd for C92H106N18O23Na [M+Na]+: 1853.7570. found: 1853.7550.
5′-Methoxycarbonylpentyl 4-azido-3-O-benzoyl-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (78)
A mixture of glycosyl donor 58 (0.228 g, 0.433 mmol), glycosyl acceptor 74 (0.366 g, 0.394 mmol) and freshly activated molecular sieves (3 Å, 0.500 g) in PhMe (10 mL) was stirred under argon for 2 h at room temperature. Then it was heated to 95° C. and TMSOTf (16 μL, 0.087 mmol) was added, and the mixture was stirred for an additional 60 min. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×30 mL). The combined filtrate (100 mL) was washed with 20% aq. NaHCO3 (50 mL), water (30 mL), and brine (30 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.444 g, 87%) as a white foam. Analytical data for 78: Rf=0.50 (ethyl acetate/toluene, 0.5/9.5, v/v); [α]D21=+42.1 (c=1.0, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.03-8.05 (m, 25H, H—Ar), 5.29 (dd, J3,4=10.3 Hz, 1H, H-3D), 5.07 (d, J1,2=1.6 Hz, 1H, H-1D), 4.96 (d, J1,2=1.8 Hz, 1H, H-1C), 4.91 (d, J1,2=1.8 Hz, 1H, H-1B), 1.22-1.29 ppm (m, 12H, H-6A, H-6B, H-6C, H-6D); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.4, 137.4, 137.3 (×2), 137.1, 133.3, 129.8, 129.5, 128.7, 128.6 (×2), 128.4, 128.3 (×2), 128.2 (×2), 128.1, 127.8, 127.6, 100.6, 100.1, 98.8, 98.6, 77.9, 77.4, 76.9, 74.4, 74.2, 72.9, 72.8, 72.7, 72.6, 72.5, 72.3, 72.2, 68.1, 67.8, 67.7, 67.5, 67.1, 64.4, 64.2, 64.1, 63.1, 51.5, 33.9, 29.0, 25.7, 24.6, 18.6 (×2), 18.4, 18.3 ppm; HRMS (ESI): m/z calcd for C66H78N12O16Na [M+Na]+: 1317.5551. found: 1317.5549.
5′-Methoxycarbonylpentyl 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (79)
Sodium methoxide (0.8 mL, 0.5 M solution) was added to a solution of 78 (0.434 g, 0.335 mmol) in CH3OH (10 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 4 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.356 g, 89%) as a white foam. Analytical data for 79: Rf=0.50 (ethyl acetate/toluene, 1/9, v/v); [α]D21=+65.6 (c=1.3, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.13-7.42 (m, 20H, H—Ar), 5.10 (d, J1,2=0.9 Hz, 1H, H-1D), 4.93 (d, J1,2=1.7 Hz, 1H, H-1C), 4.90 (d, J1,2=1.8 Hz, 1H, H-1B), 1.19-1.29 ppm (m, 12H, H-6A, H-6B, H-6C, H-6D); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.3 (×2), 137.2, 137.1, 128.7, 128.6 (×2), 128.4, 128.3 (×2), 128.2, 128.1 (×2), 100.5, 100.2, 98.6, 97.8, 77.8, 77.5, 76.9, 76.5, 74.1, 73.1, 72.7, 72.5, 72.3, 72.2, 70.0, 67.9, 67.8, 67.5, 67.3, 67.1, 66.5, 64.5, 64.4, 64.3, 51.5, 33.9, 29.1, 25.7, 24.7, 18.7, 18.6, 18.4, 18.3 ppm; HRMS (ESI): m/z calcd for C59H74N12O15Na [M+Na]+: 1213.5289. found: 1213.5284.
5′-Methoxycarbonylpentyl 4-azido-2,3-di-O-benzoyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (80)
A mixture of glycosyl donor 63 (0.220 g, 0.313 mmol), glycosyl acceptor 79 (0.339 g, 0.285 mmol) and freshly activated molecular sieves (3 Å, 0.5 g) in CH2Cl2 (10 mL) was stirred under argon for 4 h at room temperature. MeOTf (260 μL, 2.28 mmol) was added and continued stirring for additional 48 h. Then Et3N (1 mL) was added, the solid was filtered off and the residue was rinsed with CH2Cl2 (3×30 mL). The combined filtrate (100 mL) was washed with 20% aq. NaHCO3 (40 mL), water (40 mL), and brine (20 mL). The organic phase was separated, dried over MgSO4, and concentrated in vacuo. The residue was purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.479 g, 92%) as a white foam. Analytical data for 80: Rf=0.60 (ethyl acetate/toluene, 0.5/9.5, v/v); [c]D21=+15.3 (c=1.0, CHCl3); 1H NMR (600 MHz, CDCl3): δ 7.06-8.00 (m, 35H, H—Ar), 5.71 (dd, J2,3=3.3 Hz, 1H, H-2F), 5.58 (dd, J3,4=10.3 Hz, 1H, H-3F), 5.09 (d, J1,2=1.2 Hz, 1H, H-1E), 5.05-5.07 (m, 2H, H-1D, H-1F), 4.95 (d, J1,2=1.5 Hz, 1H, H-1C), 4.90 (d, J1,2=1.7 Hz, 1H, H-1B), 1.20-1.29 ppm (m, 15H, H-6A H-6B, H-6C, H-6D, H-6E); 13C NMR (126 MHz, CDCl3): δ 174.0, 165.2, 164.9, 137.5, 137.4, 137.3, 137.2, 137.1, 133.4, 133.3, 129.8 (×2), 129.5, 129.4, 129.0, 128.7, 128.6 (×2), 128.5 (×3), 128.4 (×2), 128.3 (×2), 128.2 (×2), 128.1, 127.9, 127.8, 127.7, 127.6, 100.9, 100.5, 100.2, 99.2, 98.6, 98.2, 77.9, 77.7, 77.5, 76.9, 76.4, 74.1, 73.6, 73.1, 72.9, 72.5, 72.4, 72.2 (×2), 72.0, 71.0, 69.4, 68.2, 68.1, 67.9, 67.8, 67.7, 67.5, 67.1, 64.7, 64.5, 64.4, 64.3, 63.6, 63.5, 51.5, 33.9, 29.1, 25.7, 24.7, 18.6 (×3), 18.5 (×2), 18.4 ppm; HRMS (ESI): m/z calcd for C92H110N19O23 [M+NH4]+: 1848.8016. found: 1848.8005.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (77a)
Sodium methoxide (0.8 mL, 0.5 M solution) was added to a solution of 77 (0.483 g, 0.264 mmol) in CH3OH (12 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 6 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.375 g, 87%) as oil. Analytical data for 77a: Rf=0.30 (ethyl acetate/toluene, 1.5/8.5, v/v); [α]D21=+101.4 (c=1.1, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.28-7.40 (m, 25H, H—Ar), 4.98 (d, J1,2=1.5 Hz, 1H, H-1F), 4.90 (d, J1,2=1.5 Hz, 1H, H-1E), 4.89 (d, J1,2=1.5 Hz, 1H, H-1D), 4.86 (d, J1,2=2.0 Hz, 1H, H-1C), 4.85 (d, J1,2=2.0 Hz, 1H, H-1B), 1.13-1.26 ppm (m, 18H, H-6A H-6B, H-6C, H-6D, H-6E, H-6F); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.4 (×2), 137.2 (×3), 128.7 (×2), 128.6 (×2), 128.4 (×2), 128.3 (×4), 128.1 (×2), 100.7, 100.4, 100.2 (×2), 100.1, 98.6, 77.5, 76.9, 76.6 (×2), 74.1, 73.6, 73.5, 73.3, 73.2, 72.3 (×2), 72.2 (×2), 70.2, 70.0, 67.9, 67.8 (×2), 67.5, 67.4, 67.1, 65.8, 64.4, 64.3, 64.2, 51.5, 33.9, 29.1, 25.7, 24.7, 18.6 (×2), 18.5 (×3), 18.2 ppm; HRMS (ESI): m/z calcd for C78H98N18O21Na [M+Na]+: 1645.7046. found: 1645.7043.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (48)
To a stirred solution of 77a (0.130 g, 0.080 mmol), in pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 77b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C78H111N6O21 [M+H]+: 1467.7797. found: 1467.7795. This crude material was directly used for formylation.
Compound 77b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydride (Angew (1979) Chem. Int. Ed. 18, 614) (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 77c. HRMS (ESI): m/z calcd for C84H111N6O27Na [M+H]+: 1635.7492. found: 1635.7485.
Compound 77c was dissolved in CH3OH/H2O (2:1, 5 mL), Pd(OH)2 on carbon (20%, 0.050 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford the title compound (0.052 g, 55%, over 3 steps) as a white foam. Analytical data for 48: Rf=0.20 (CH3OH/CH2Cl2, 2/3, v/v); 1H NMR (500 MHz, D2O): δ 8.17-8.19 (Z) and 7.99-8.02 (E) (m, 6H, NCHO), 4.84-5.20 (m, 6H, 6×H-1), 1.16-1.27 ppm (m, 18H, 6×H-6); 13C NMR (126 MHz, D2O): 6178.5, 168.8, 165.9, 103.0, 102.9, 101.6, 101.5 (×2), 99.2, 78.6, 78.3, 78.1 (×2), 78.0 (×2), 77.9, 69.9 (×2), 69.2 (×2), 69.0, 68.9 (×2), 68.8, 68.7, 68.6 (×2), 68.5 (×3), 57.9, 57.7, 53.1, 53.0, 52.9, 52.8 (×2), 52.7, 49.9, 34.6, 29.0, 25.8, 24.9, 17.9 (×2), 17.8, 17.7 (×2), 17.6 (×2) ppm; HRMS (ESI): m/z calcd for C49H80N6O27Na [M+Na]+: 1207.4964. found: 1207.4941.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (85)
A solution of 48 (0.034 g, 0.029 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.034 g, 97%) as a white foam. Analytical data for 85: Rf=0.20 (CH3OH); 1H NMR (500 MHz, D2O): δ 8.16-8.19 (Z) and 7.98-8.02 (E) (m, 6H, NCHO), 4.81-5.19 (m, 6H, 6×H-1), 1.14-1.26 ppm (m, 18H, 6×H-6); 13C NMR (126 MHz, D2O): 6177.4, 177.1, 167.9, 167.8, 164.9, 164.6, 102.4, 102.1, 102.0 (×2), 100.8, 100.7, 100.6 (×2), 98.6, 98.3 (×2), 77.6, 77.4, 77.3, 77.2, 77.1, 77.0, 76.8, 70.4, 70.3, 70.1, 70.0, 69.4, 69.2, 69.0 (×2), 68.3 (×2), 68.0 (×2), 67.9 (×2), 67.8 (×2), 67.7 (×2), 67.6 (×2), 67.5 (×2), 67.0, 57.0, 56.9, 56.7, 53.9, 53.8, 53.6, 52.0, 51.9 (×2), 51.8 (×2), 51.7, 40.9, 40.4, 40.0, 39.7, 35.7, 28.2, 25.0 (×2), 24.9, 17.1 (×2), 17.0 (×2), 16.9 (×3), 16.8, 16.7 ppm; HRMS (ESI): m/z calcd for C50H84N8O26Na [M+Na]+: 1235.5389. found: 1235.5384.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (91)
To a stirred solution of 85 (0.0142 g, 0.012 mmol) in water (0.5 mL) and EtOH (0.4 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 55 μL) was added and the pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.014 g, 88%) as a white foam. Analytical data for 91: Rf=0.40 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (700 MHz, D2O): δ 8.20-8.23 (Z) and 8.02-8.07 (E) (m, 6H, NCHO), 4.88-5.34 (m, 6H, 6×H-1), 1.17-1.35 (m, 20H, —CH2d—, 6×H-6), 0.88-1.00 ppm (m, 3H, —CH31); 13C NMR (126 MHz, D2O): δ 189.8, 189.6, 184.3, 178.5, 178.1, 177.9, 174.8, 174.7, 168.8, 165.9, 102.9 (×2), 101.5 (×3), 99.2 (×2), 78.5, 78.1 (×3), 78.0 (×2), 75.4, 75.3, 69.9, 69.2, 69.0, 68.9, 68.7, 68.5, 57.9, 57.7, 53.0, 52.9 (×2), 52.6, 45.2, 45.0, 40.3, 40.2, 36.7, 32.4, 32.3, 29.2, 26.1, 26.0, 25.9 (×2), 25.9, 19.2, 19.1, 19.0, 17.9 (×2), 17.8 (×2), 17.7 (×2), 13.9 ppm; HRMS (ESI): m/z calcd for C58H92NsO29Na [M+Na]+: 1387.5862. found: 1387.5856.
5′-Methoxycarbonylpentyl 4-azido-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→3) 4-azido-2-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranosyl (1→2) 4-azido-3-O-benzyl-4,6-dideoxy-α-D-mannopyranoside (80a)
Sodium methoxide (0.8 mL, 0.5 M solution) was added to a solution of 80 (0.413 g, 0.225 mmol) in CH3OH (12 mL) until pH  ̃9 and the resulting mixture was stirred under argon for 6 h at room temperature. Then the reaction mixture was neutralized with Amberlite IR 120 (H+) ion exchange resin, the resin was filtered off and rinsed successively with CH3OH. The combined filtrate was concentrated in vacuo and purified by column chromatography on silica gel (ethyl acetate-toluene gradient elution) to afford the title compound (0.334 g, 91%) as a white foam. Analytical data for 80a: Rf=0.40 (ethyl acetate/toluene, 1/9, v/v); [α]D21=+61.0 (c=1.0, CHCl3); 1H NMR (500 MHz, CDCl3): δ 7.14-7.38 (m, 25H, H—Ar), 5.03-5.05 (br. s., 2H, H-1D, H-1E), 4.94 (d, J1,2=1.5 Hz, 1H, H-1C), 4.91 (d, J1,2=1.2 Hz, 1H, H-1B), 4.90 (d, J1,2=1.5 Hz, 1H, H-1F), 1.15-1.35 ppm (m, 20H, —CH2d—, H-6A, H-6B, H-6C, H-6D, H-6E, H-6F); 13C NMR (126 MHz, CDCl3): δ 174.0, 137.5, 137.4, 137.3, 137.2, 137.1, 128.7, 128.6 (×3), 128.4 (×2), 128.3 (×2), 128.2 (×2), 128.1 (×2), 128.0 (×2), 127.9, 127.5, 101.0, 100.9, 100.4, 100.2, 98.6, 98.1, 78.0, 77.6, 77.5 (×2), 76.9, 76.4, 74.0, 73.3, 73.1, 72.9, 72.5, 72.4, 72.2, 72.1, 71.9, 70.2, 69.9, 68.1, 67.9 (×2), 67.8, 67.5 (×2), 67.1, 65.8, 64.6, 64.5, 64.4, 64.3, 64.0, 51.5, 33.9, 29.1, 25.7, 24.7, 18.6 (×3), 18.5, 18.4, 18.3 ppm; HRMS (ESI): m/z calcd for C78H98N18O21Na [M+Na]+: 1645.7046. found: 1645.7035.
5′-Methoxycarbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (49)
To a stirred solution of 80a (0.150 g, 0.092 mmol), in pyridine (5 mL) and water (2 mL) mixture, H2S was bubbled for 0.5 h at 40° C., and stirring was continued for 16 h. Then argon was bubbled through the solution for 10 min, solvents were removed in vacuo, and the residue was co-evaporated with toluene (3×10 mL) and dried. The high resolution mass spectrometry analysis showed completion of reaction to corresponding amine compound 80b and no products arising from incomplete reduction. HRMS (ESI): m/z calcd for C78H111N6O21 [M+H]+: 1467.7797. found: 1467.7781. This crude material was directly used for formylation.
Compound 80b in CH3OH (5 mL) at −20° C. was added a freshly prepared formic anhydride[22] (5 mL, ethereal solution) and stirred for 3 h, then slowly allowed to warm to room temperature. Then solvents were evaporated and the residue was passed through column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford disaccharide 80c. HRMS (ESI): m/z calcd for C84H110N6O27Na [M+Na]+: 1657.7311. found: 1657.7314.
Compound 80c was dissolved in CH3OH/H2O (2:1, 5 mL), Pd(OH)2 on carbon (20%, 0.050 g) was added. Then it was stirred under a pressure of hydrogen gas at room temperature for 16 h. After filtration through celite pad and washed with CH3OH (3×10 mL), and solvents were removed in vacuo. The residue was purified by column chromatography on silica gel (methanol-dichloromethane gradient elution) to afford the title compound (0.066 g, 60%, over 3 steps) as a white foam. Analytical data for 49: Rf=0.30 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (700 MHz, D2O): δ 8.20-8.25 (Z) and 8.02-8.06 (E) (m, 6H, NCHO), 4.89-5.23 (m, 6H, 6×H-1), 1.19-1.31 ppm (m, 18H, 6×H-6); 13C NMR (176 MHz, D2O): δ 178.4, 168.6, 165.7 (×2), 165.4 (×2), 103.1, 102.4, 101.5 (×2), 101.3, 99.1 (×2), 78.8, 78.4, 78.2, 78.0, 77.9, 77.6, 77.2, 69.7 (×2), 69.6 (×2), 69.5, 69.1, 69.0, 68.8, 68.7 (×2), 68.6, 68.5, 68.4 (×2), 68.3, 68.2, 67.9, 57.8, 57.7, 57.6, 52.9, 52.8, 52.7, 52.6, 52.5, 51.7, 34.4, 28.9, 25.7, 24.8, 18.0, 17.9, 17.8 (×2), 17.7 (×2), 17.6 (×3), 17.5 ppm; HRMS (ESI): m/z calcd for C49H80N6O27Na [M+Na]+: 1207.4964. found: 1207.4963.
(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside (86)
A solution of 49 (0.041 g, 0.035 mmol) in freshly distilled 1,2-diaminoethane (0.5 mL) was stirred at 65° C. for 48 h. Then excess reagent was removed in vacuo, and the residue was co-evaporated with CH3OH (3×10 mL) and dried. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.039 g, 93%) as a white foam. Analytical data for 86: Rf=0.20 (CH3OH); 1H NMR (500 MHz, D2O): δ 8.25-8.32 (Z) and 8.08-8.14 (E) (m, 6H, NCHO), 4.92-5.30 (m, 6H, 6×H-1), 1.23-1.39 ppm (m, 18H, 6×H-6); 13C NMR (126 MHz, D2O): δ 178.4, 178.1, 168.8 (×2), 165.9, 165.6, 103.3 (×2), 102.6, 101.9, 101.8, 101.6, 101.5, 99.3, 99.2, 78.9, 78.6, 78.5, 78.1, 77.8, 77.4, 71.0, 69.9 (×2), 69.7 (×2), 69.6, 69.4, 69.2, 69.0, 69.0, 68.9, 68.8, 68.6 (×2), 68.5 (×2), 68.4, 68.0, 57.9 (×2), 57.8, 57.7, 56.4, 53.0, 52.8 (×2), 52.7, 51.8, 41.4, 41.1, 40.6, 36.6, 29.1, 26.0, 25.9 (×2), 18.1 (×3), 18.0, 17.9, 17.8, 17.7, 17.6 ppm; HRMS (ESI): m/z calcd for C50H85N8O26 [M+H]+: 1213.5570. found: 1213.5564.
1-[(2′-Aminoethylamido)carbonylpentyl 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→3) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranosyl (1→2) 4,6-dideoxy-4-formamido-α-D-mannopyranoside]-2-butoxycyclobutene-3,4-dione (92)
To a stirred solution of 86 (0.014 g, 0.011 mmol) in water (0.8 mL) and EtOH (0.6 mL), a solution of 3,4-dibutoxy-3-cyclobutene-1,2-dione (20% in ethanol, 55 μL) was added and the pH was adjusted to 8 by careful addition of aq.NaHCO3 (1%) solution. After 0.5 h, TLC showed the reaction was complete; the reaction mixture was neutralized using CH3COOH (10%) and concentrated in vacuo. The residue was purified by reversed phase HPLC on a C18 column with a gradient of water-acetonitrile and lyophilized, to give the title compound (0.012 g, 76%) as a white foam. Analytical data for 92: Rf=0.40 (CH3OH/CH2Cl2, 1/1, v/v); 1H NMR (700 MHz, D2O): δ 8.20-8.25 (Z) and 8.02-8.07 (E) (m, 6H, NCHO), 4.85-5.21 (m, 6H, 6×H-1), 1.18-1.35 (m, 20H, —CH2d—, 6×H-6), 0.89-0.97 ppm (m, 3H, —CH31); 13C NMR (126 MHz, D2O): δ 189.8, 189.7, 184.3, 178.5, 178.1, 177.9 (×2), 174.8, 174.7, 168.8, 165.9, 165.6, 103.3, 102.6, 101.6, 101.5, 99.2, 78.9, 78.5, 78.2, 77.8, 77.3, 75.4, 75.3, 70.8, 69.9, 69.7, 69.2, 69.0, 68.8, 68.7, 68.6, 68.5, 68.4, 57.9, 57.7, 53.0, 52.8, 52.7, 51.8, 45.2, 45.0, 40.3, 40.2, 36.7, 32.4, 29.2, 26.1, 26.0, 25.9 (×2), 19.1, 19.0, 18.1, 18.0, 17.9 (×2), 17.8, 17.7, 13.9 ppm; HRMS (ESI): m/z calcd for C58H92N8O29Na [M+Na]+: 1387.5862. found: 1387.5864.
Conjugation of the Pentasaccharide Squarate 40 to BSA (42)
BSA (11.7 mg, 0.17 mol) and squarate 40 (4.2 mg, 3.5 μmol) were dissolved in 0.5 M borate buffer pH 9 (350 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with water and dialyzed against deionized water (3×2 L) at 4° C., spinned and lyophilized. The product of conjugation was obtained as a white solid (12.5 mg, 84%): MALDI-TOF-MS indicated the conjugate 42 had an average of 16.4 pentasaccharides per BSA.
Conjugation of the Nonasaccharide Squarate 41 to BSA (43)
The conjugation of BSA (5.5 mg, 0.08 μmol) and squarate 41 (3.2 mg, 1.6 μmol) in borate buffer (220 μl) was performed as described for 42. After the dialysis (5×2 L) and lyophilization the conjugate 43 was obtained as a white solid (6 mg, 74%). As calculated from MALDI-TOF-MS spectrum the average number of nonasaccharides per BSA was 16.8.
Conjugation of Squarate Derivative 87 to BSA (93).
BSA (30 mg, 0.451 μmol) and disaccharide squarate 87 (4.5 mg, 6.77 μmol) were dissolved in 0.5 M borate buffer pH 9 (600 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 93 was obtained as a white foam (30.4 mg, 89%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 93 had an average of 15.2 disaccharides per BSA.
Conjugation of Squarate Derivative 88 to BSA (94).
BSA (30 mg, 0.451 mol) and trisaccharide squarate 88 (5.7 mg, 6.74 μmol) were dissolved in 0.5 M borate buffer pH 9 (700 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 94 was obtained as a white foam (32.3 mg, 91%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 94 had an average of 15.9 trisaccharides per BSA.
Conjugation of Squarate Derivative 89 to BSA (95).
BSA (32.5 mg, 0.489 μmol) and trisaccharide squarate 89 (6.2 mg, 7.34 μmol) were dissolved in 0.5 M borate buffer pH 9 (700 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 95 was obtained as a white foam (33.5 mg, 87%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 95 had an average of 15.7 trisaccharides per BSA.
Conjugation of Squarate Derivative 90 to BSA (96).
BSA (11 mg, 0.165 μmol) and tetrasaccharide squarate 90 (2.5 mg, 2.45 μmol) were dissolved in 0.5 M borate buffer pH 9 (400 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 96 was obtained as a white foam (12 mg, 92%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 96 had an average of 13.4 tetrasaccharides per BSA.
Conjugation of Squarate Derivative 91 to BSA (97).
BSA (5 mg, 0.0752 mol) and hexasaccharide squarate 91 (1.5 mg, 1.099 μmol) were dissolved in 0.5 M borate buffer pH 9 (400 μL) and stirred gently at room temperature for 3 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 97 was obtained as a white foam (5.5 mg, 87%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 97 had an average of 13.8 hexasaccharides per BSA.
Conjugation of Squarate Derivative 92 to BSA (98).
BSA (5 mg, 0.0752 mol) and hexasaccharide squarate 92 (1.5 mg, 1.099 mol) were dissolved in 0.5 M borate buffer pH 9 (400 μL) and stirred gently at room temperature for 2 days. Then the reaction mixture was diluted with Mili-Q water, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL), lyophilized and the BSA-conjugate 98 was obtained as a white foam (6 mg, 99%). The MALDI-TOF mass spectrometry analysis indicated the conjugate 98 had an average of 10.8 hexasaccharides per BSA.
Conjugation of Squarate Derivative 87 to Co-Povidone Polymer (99).
High Loading.
Co-povidone (6.9 mg, 5.95 μmol, 1 eq.) and disaccharide squarate 87 (2.0 mg, 2.97 μmol, 0.5 eq.) were dissolved in 0.5 M borate buffer pH 9 (500 μL) and stirred gently at room temperature for 2 days. Then, a solution of 5% aq.Ac2O (1 mL) and saturated NaHCO3 (1 mL) was added and stirred for 3 h. After that, the reaction mixture was diluted with Mili-Q water, dialyzed against deionized water (5×2 L), lyophilized to obtain the co-povidone-conjugate 99a.
Low Loading.
Co-povidone (5.0 mg, 4.31 μmol, 1 eq.) and disaccharide squarate 87 (0.5 mg, 0.74 μmol, 0.166 eq.) were dissolved in 0.5 M borate buffer pH 9 (500 μL) and stirred gently at room temperature for 2 days. Then, a solution of 5% aq.Ac2O (1 mL) and saturated NaHCO3 (1 mL) was added and stirred for 3 h. After that, the reaction mixture was diluted with Mili-Q water, dialyzed against deionized water (5×2 L), lyophilized to obtain the co-povidone-conjugate 99b.
Conjugation of Squarate Derivative 91 to Co-Povidone Polymer (100).
High Loading:
Co-povidone (5.0 mg, 4.31 mol, 1 eq.) and hexasaccharide squarate 91 (2.94 mg, 2.15 μmol, 0.5 eq.) were dissolved in 0.5 M borate buffer pH 9 (500 μL) and stirred gently at room temperature for 2 days. Then, a solution of 5% aq.Ac2O (1 mL) and saturated NaHCO3 (1 mL) was added and stirred for 3 h. After that, the reaction mixture was diluted with Mili-Q water, dialyzed against deionized water (5×2 L), lyophilized to obtain the co-povidone-conjugate 100a.
Low Loading:
Co-povidone (5.0 mg, 4.31 μmol, 1 eq.) and hexasaccharide squarate 91 (1.0 mg, 0.73 μmol, 0.166 eq.) were dissolved in 0.5 M borate buffer pH 9 (500 μL) and stirred gently at room temperature for 2 days. Then, a solution of 5% aq.Ac2O (1 mL) and saturated NaHCO3 (1 mL) was added and stirred for 3 h. After that, the reaction mixture was diluted with Mili-Q water, dialyzed against deionized water (5×2 L), lyophilized to obtain the co-povidone-conjugate 100b.
Conjugation of Squarate Derivative 91 to Tetanus Toxoid (101).
Hexasaccharide squarate 91 (0.55 mg, 0.403 μmol) was added to the solution of tetanus toxoid (2 mg, 0.0133 μmol) in 0.5 M borate buffer pH 9 (1 mL) and stirred gently at room temperature for 3 days. Then the reaction mixture was washed with borate buffer, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL) and the resulting tetanus toxoid-conjugate 101 was stored in PBS buffer. The MALDI-TOF mass spectrometry analysis indicated the conjugate 101 had an average of 12.6 hexasaccharides per tetanus toxoid.
Conjugation of Squarate Derivative 92 to Tetanus Toxoid (102).
Hexasaccharide squarate 92 (0.55 mg, 0.403 μmol) was added to the solution of tetanus toxoid (2 mg, 0.0133 μmol) in 0.5 M borate buffer pH 9 (1 mL) and stirred gently at room temperature for 2 days. Then the reaction mixture was washed with borate buffer, filtered through milipore filtration tube (10,000 MWCO, 4×10 mL) and the resulting tetanus toxoid-conjugate 102 was stored in PBS buffer. The MALDI-TOF mass spectrometry analysis indicated the conjugate 102 had an average of 6.2 hexasaccharides per tetanus toxoid.
Specific M-Antigen—Proof of Concept Studies on OPS from Brucella and Y. enterocolitica O:9
Monoclonal antibody binding analysis using the anti-M specific antibody BM40 (Greiser et al. (1987) Ann Inst Pasteur Microbiol 138, 549-560) against Brucella A, M and Y. enterocolitica O:9 sLPS antigens, prepared by hot-phenol extraction (Westphal et al. (1952) Z. Naturforsch. 7, 148-155) confirmed the exceptionally high specificity of the BM40 response in this case. There was no measurable binding against the Y. enterocolitica O:9 sLPS and binding to B. melitensis 16M (an M dominant strain) was tenfold greater than binding to B. abortus S99 (an A dominant strain).
During further exploratory studies, the absorption methods described above (Alton et al. (1994) Techniques for the Brucellosis Laboratory, pages 53-54; INRA Editions, ISBN-10: 2738000428; Kittelberger et al. (1998) Vet. Microbial. 60, 45-57) were evaluated, using sera from cattle experimentally infected with Brucella abortus strain 544 (an A dominant strain) or Y. enterocolitica O:9. A residual anti-Brucella sLPS titre was observed in indirect ELISA in Y. enterocolitica O:9 absorbed samples in some, but not all, sera from the Brucella infected animals.
The sera from the experimentally infected cattle was also evaluated by indirect ELISAs using B. melitensis 16M and Y. enterocolitica O:9 OPS antigens purified from the smooth LPS using mild acid hydrolysis and size exclusion chromatography (Meikle et al. (1989) Infect Immun 57, 2820-2828), tested to be free of lipid-A using the limulus amebocyte lysate reaction (Ding et al. (2001) Trends Biotechnol. 19, 277-281). Samples taken from the cattle (cows) 3, 7, 16, 24 and 53 weeks post infection were taken from each of the four animals experimentally infected with B. abortus strain 544 and from each of the four animals experimentally infected with Y. enterocolitica O:9. These samples have been previously described and also tested by conventional serological assays for brucellosis as described previously (McGiven et al. (2008) Journal of Immunological Methods 20, 7-15).
The OPS from B. melitensis 16M was chosen in preference to OPS from a B. abortus A dominant strain due to the higher frequency of α-1,3 linkages and M epitopes, so that the extremes of the structural variation in the natural 4,6-dideoxy-4-formamido-α-D-mannopyranose homopolymers would be represented.
Owing to their high solubility, the purified OPS antigens do not bind effectively to ELISA polystyrene ELISA plates by passive absorption (unless conjugated to carrier molecules containing hydrophobic regions). To enable their immobilisation to a solid phase, Carbo-BINDTM 96 well ELISA plates were used (Corning, product number 2507) which have hydrazide functional groups on the well surface. These hydrazide groups react spontaneously with aldehydes which may be generated in carbohydrates by oxidation.
The OPS was oxidised at 100 g/ml with 10 mM sodium metaperiodate and 50 mM sodium acetate buffer (SAB) pH 5.5 in the dark at 4° C. for 30 minutes. After this time the antigen was diluted to between 0.5 to 0.125 g/ml in SAB pH 5.5 and 100 μl was added to the wells of a Carbo-BINDTM plate. The plate was incubated for 1 hour at 37° C. and then washed with 4 times 200 μl of phosphate buffered saline with 0.05% Tween-20 (PBS-T20) and tapped dry.
Serum was diluted 1/50 in buffer (Sigma #B6429) and 100 μl of this was added per well of the antigen coated plate, each sample tested in duplicate. The plate was incubated for 1 hr at room temperature on a rotary shaker at 160 rpm and then washed with PBS-T20 as described above.
An HRP conjugated Protein-G conjugate (Thermo #31499), diluted to 1 μg/ml in buffer, was then added in 100 μl volumes to each well of the plate which was then incubated and washed as described above for serum. The plate was then developed with ABTS (2,2′-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt) and hydrogen peroxide substrate for 10-15 mins, stopped with 0.4 mM sodium azide and read at 405 nm wavelength. The optical density for the duplicates was averaged and the blank OD (buffer only instead of sera) was subtracted. This value was then expressed as a percentage of a common positive control serum sample from a B. abortus biovar 1 (A dominant) infected bovine for cattle sera.
As expected, there was much cross reaction between the Brucella and Y. enterocolitica O:9 OPS antigens with both sets of sera, i.e., those from the cattle experimentally infected with Brucella abortus strain 544 and those experimentally infected with Y. enterocolitica O:9. An additional output was calculated for each sample by dividing the result from the B. melitensis OPS iELISA by that from the Y. enterocolitica O:9 OPS iELISA to derive a simple ratiometric value (henceforth described as the ‘Bm16M/YeO:9 Ratio’). Thus, higher Bm16M/YeO:9 Ratio values signify that the intensity of the reaction to the B. melitensis 16M OPS antigen was greater than the intensity of the reaction to the Y. enterocolitica O:9 antigen relative to lower Bm16M/YeO:9 Ratio values. Analysis of this data set revealed that there was a highly significant difference (P=0.008, Student's t-test for unpaired data) between the the Bm16M/YeO:9 Ratio values for the two different sample populations, whereby the mean value from the Brucella infected animals was higher than the mean value from the Y. enterocolitica O:9 infected animals. There was, therefore, a significant difference in the way that the serum from the two populations reacted to these two antigen types, with the sera from the Brucella infected animals reacting with a relatively higher intensity to the B. melitensis 16M OPS and vice versa. This result suggests that there are significant and detectable differences in the anti-OPS antibody repertoire between the two serum populations.
As a consequence of this finding with the relative OPS ELISA results, the same methods were applied to archived bovine field sera from Great Britain. A total of 45 samples from individual animals confirmed by culture to be infected with B. abortus biovar 1 (A dominant) were tested. Also 68 samples were tested from individual animals whose sera was collected from 1996 to 1999, more than 10 years since the declaration of officially brucellosis free status for Great Britain, that were positive in conventional serology for brucellosis such as B. abortus S99 sLPS iELISA, SAT and CFT (Nielsen et al. (2009) “Bovine brucellosis” In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, pg 10-19) but for which there was no cultural or epidemiological evidence of brucellosis. As with the data from the experimentally infected animals there was a highly significant difference (P=0.000012, Student's t-test for unpaired data) between the Bm16/YeO:9 Ratio values for the two different serological groups. As before, sera from cattle with confirmed brucellosis had, on average, higher values (FIG. 2).
The results from both the B. melitensis and Y. enterocolitica O:9 OPS iELISAs were evaluated to find the positive/negative cut-off for each which generated the highest Youden Index (YI=diagnostic sensitivity [DSn]+diagnostic specificity [DSp]−1). These optimised YI values with the associate DSn and DSp figures are shown in Table 3.







TABLE 3







Performance statistics for OPS iELISAs as tested on bovine sera










Optimal Youden Index




(YI = DSn + DSp − 1)
ROC - Area Under Curve













YI
DSn
DSp

95% Confidence


Assay
Estimate
%
%
AUC
Interval





Y. enterocolitica
0.1297
64.44
48.53
0.5065
0.3964-0.6167


O:9 OPS


iELISA


B. melitensis
0.4232
55.56
86.76
0.7065
0.6024-0.8106


16M OPS


iELISA


Bm16M/YeO:9
0.5343
66.67
86.76
0.8056
0.7219-0.8892


Ratio









To further evaluate the diagnostic effectiveness of each of the OPS iELISAs Receiver Operator Characteristic (ROC) Curve analysis was used, in particular the evaluation of the Area Under the Curve (AUC) (Hanley and McNeil (1982) Radiology 143, 29-36). In this context, the AUC represents the ability of the assay to correctly classify samples from animals that are Brucella infected and those that are not. The data in Table 2 shows that the B. melitensis OPS iELISA has a higher optimised YI and AUC value than the Y. enterocolitica O:9 OPS iELISA.
In Table 4, P values relating to testing for significant differences between AUC data are presented. Testing for the significance of differences between AUC values was performed using the method for paired samples (Hanley and McNeil (1983) Radiology 148, 839-843).







TABLE 4







Comparison of ROC AUC statistics for the OPS iELISAs as tested on


bovine sera









Assay




Difference between AUC
Y. enterocolitica
B. melitensis 16M


(P = [one-tailed])
O:9 OPS iELISA
OPS iELISA





B. melitensis 16M OPS iELISA
<0.0001



Bm16M/YeO:9
<0.0001
0.239









This data shows that there is a highly significant difference (P<0.0001) between the AUC values for the Y. enterocolitica O:9 and B. melitensis 16M OPS iELISAs and therefore the assay is significantly superior. The improvement in diagnostic performance when using the Bm16M/YeO:9 Ratio values is also demonstrated in Tables 3 and 4. The optimal YI value is greater than that for both of the individual OPS iELISA assays. The DSp is equal to that of the B. melitensis 16M OPS iELISA and the DSn is superior. The AUC is also greater, but not significantly so, compared to the AUC for the B. melitensis 16m OPS iELISA (P=0.239).
This is strong evidence to demonstrate that a combinational ratiometric approach to the determination of infection status can be more advantageous than the interpretation of one test alone when there is significant cross reaction due to similar but non-identical antigens. The data for the B. melitensis 16M OPS iELISA alone and in combination as a ratiometric assay suggests that the M epitope is playing a major role in the significant differences in antibody binding that have been observed. The Bm16M/YeO:9 Ratio evaluation of the samples is a relatively crude attempt to delineate the contribution to overall titre made by the specific antibodies and epitopes from the contribution made by the common ones.
The same OPS iELISA methods were also applied to 41 samples from individual swine that were positive to the Rose Bengal Test (RBT) and iELISA (Olsen, (2010) “Porcine Brucellosis” In: Office International Des Epizooties, Paris) and from herds confirmed by culture to be infected with B. suis biovar 1, an A dominant OPS biovar (Meikle et al. (1989) Infect Immun 57, 2820-2828; Olsen, (2009) “Porcine Brucellosis” In: Office International Des Epizooties, Paris, pages 3-4). A further 52 samples were tested which were collected from individual animals in Great Britain, officially free of B. suis, within herds which from which one or more sample positive in conventional serology such as RBT, cELISA, iELISA (Olsen, (2009) “Porcine Brucellosis” In: Office International Des Epizooties, Paris, pages 3-4) where obtained and where there was no epidemiological evidence of brucellosis.
As with the data from the cattle sera samples, there was a highly significant difference (P=0.000000006, using the unpaired Student's t-test) between the Bm16/YeO:9 Ratio values for the two different serological groups. As before, sera from swine with confirmed brucellosis had a higher, on average, values than did the false positive serological samples (FIG. 3A). These samples were also tested by B. abortus S99 (A dominant) OPS iELISA (FIG. 3B) and a ratiometric expression of the data, analogous to the Bm16M/YeO:9 Ratio, was evaluated. There was a significant difference between the ratio of the B. abortus S99 to Y. enterocolitica O:9 OPS iELISA results for the different serum groups, but the difference was not as strong (P=0.023) as observed with the Bm16M/YeO:9 Ratio. In fact, the difference between the results from the two Brucella OPS antigens, B. melitensis 16M and B. abortus S99, was much more significant (P=0.000000016) than the difference between the Y. enterocolitica O:9 and B. abortus S99 results. This reflects the known structure of the these antigens with the A dominant OPS of B. abortus S99 having only approximately 2% α-1,3 linkages compared to the M dominant B. melitensis 16M OPS with 20% and Y. enterocolitica with 0%.
The optimised YI, as described above, for the individual OPS iELISAs and the Bm16M/YeO:9 Ratio, results for the swine sera are shown in Table 5 where: Bm16M/YeO:9>B. melitensis 16M>B. abortus S99>Y. enterocolitica O:9.







TABLE 5







Performance statistics for OPS iELISAs as tested on porcine sera










Optimal Youden Index




(YI = DSn + DSp − 1)
ROC - Area Under Curve













YI
DSn
DSp

95% Confidence


Assay
Estimate
%
%
AUC
Interval





Y. enterocolitica
0.3588
87.80
48.08
0.6445
0.5328-0.7562


O:9 OPS iELISA


B. abortus S99
0.6472
87.80
76.92
0.8607
0.7832-0.9382


OPS iELISA


B. melitensis
0.7087
80.49
90.38
0.9135
0.8559-0.9710


16M


OPS iELISA


B. melitensis
0.7678
90.24
86.54
0.9085
0.8437-0.9733


16M/


Y. enterocolitica


O:9









The data for the AUC was similar whereby: B. melitensis 16M>Bm16MIYeO:9 Ratio>B. abortus S99>Y. enterocolitica O:9. The AUC for the Y. enterocolitica O:9 OPS iELISA was significantly lower (P<0.0001) than for the other three outputs (Table 6). There was a difference of weak significance between the AUC for the B. abortus and B. melitensis OPS iELISAs (P=0.066).







TABLE 6







Comparison of ROC AUC statistics for the OPS iELISAs as tested on


porcine sera










Assay

B. abortus
B. melitensis


Difference between AUC
Y. enterocolitica
S99
16M OPS


(P = [one-tailed])
O:9 OPS iELISA
OPS iELISA
iELISA





B. abortus S99 OPS
<0.0001




iELISA


B. melitensis 16M OPS
<0.0001
0.066


iELISA


Bm16M/YeO:9
<0.0001
0.174
0.452









The same methods were applied to 21 serum samples from individual ELISA positive swine from herds confirmed by culture to be infected with B. suis biovar 2 and compared to the data from the 52 samples from non-infected swine, but seropositive herds, in Great Britain, as well as to the 41 samples from B. suis biovar 1 infected animals. There was no significant difference in the Bm16M/YeO:9 Ratio results between the sera from the B. suis biovar 2 infected animals and from sera from the non-infected animals (P=0.926). This is in keeping with the recent discovery that, uniquely for Brucella, the OPS from B. suis biovar 2 contains no α-1,3 linkages (Zaccheus et al. (2013) PLoS One 8, e53941) and therefore the OPS is highly similar, if not identical, to that of Y. enterocolitica O:9.
The data from the swine sera demonstrates that assays using OPS with higher proportions of α-1,3 linkages provide superior diagnostic attributes. This is further evidence that the α-1,3 linkage is part of a significant and discriminating epitope for polyclonal sera derived from animals naturally infected with Brucella. 
Developing the Discrete M Epitope Antigen (Specific M-Antigen)
The evidence described above from the OPS iELISAs provided the stimulus for additional studies to define, isolate and apply the ‘M’ epitope to the serodiagnosis of brucellosis in order to increase the accuracy of the results. The purified native OPS from Y. enterocolitica O:9, B. melitensis 16M (‘M’ dominant) and B. abortus S99 (‘A’ dominant) was partially hydrolysed using hot concentrated hydrochloric acid to obtain di- to dodeca-saccharides. These were evaluated by LC-ESI-MS/MS using a graphitized carbon column (Ruhaak et al. (2009) Anal. Bioanal. Chem. 394, 163-174) to separate them and confirm their identity as 4,6-dideoxy-4-formamido-α-D-mannopyranosyl oligomers.
The oligosaccharides from the B. abortus S99 OPS were subjected to affinity chromatography using an affinity chromatography column with immobilised Brucella anti-M monoclonal antibody BM40 and the wash and elution fractions were further evaluated by LC-ESI-MS/MS using a graphitized carbon column (Ruhaak et al. (2009) Anal. Bioanal. Chem. 394, 163-174) to separate the oligosaccharides. Tetrasaccharides of 4,6-dideoxy-4-formamido-α-D-mannopyranosyl were readily detectable in the bound and subsequently eluted, using dilute hydrochloric acid, fractions; the LC-ESI-MS chromatogram was compared to those for the tetrasaccharides found in the non-affinity selected oligosaccharides derived from the partial acid hydrolysis of the three native antigens.
Whereas the chromatogram for the B. melitensis 16M derived tetrasaccharide was relatively simple (FIG. 4A), those for B. abortus S99 (FIG. 4B) and Y. enterocolitica O:9 (FIG. 4C) were more complex. As the mass was the same across the chromatogram, the differences in elution profile were most likely due to changes in conformation and interaction with other oligosaccharides during separation within the graphitised column. What is evident is that the major peak found in the B. melitensis 16M tetrasaccharide chromatograph, eluting at about 9 mins, is also found in the B. abortus S99 but not the Y. enterocolitica O:9 chromatograph. The chromatograph of the B. abortus S99 tetrasaccharide affinity selected by the anti-M monoclonal antibody (FIG. 4D) looks extremely similar to the unselected tetrasaccharide from the acid hydrolysed native B. melitensis 16M OPS preparation. The conclusion from this study is that a tetrasaccharide from the Brucella OPS is large enough to form a viable antibody epitope and that the Brucella specific anti-M monoclonal antibody binds to a tetrasaccharide that is detectable in B. abortus and not in Y. enterocolitica O:9. From the pre-existing structural knowledge, the only known difference is the α-1,3 linkage.
All the evidence presented above provided a good basis for the hypothesis that a tetrasaccharide antigen containing the M epitope, whilst minimising any C/Y or A epitope-like properties, would make a useful serodiagnostic antigen. Four 4,6-dideoxy-4-formamido-α-D-mannopyranose residues were synthesised (Sussex Research Laboratories Inc, Ottawa, Ontario, Canada) within a tetrasaccharide that is sequentially α-1,2, α-1,3 and α-1,2 linked, generating a tetrasaccharide having Formula VIII:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (Formula VIII)

This molecule had not previously been synthesised and applied and is referred to below as the TSM antigen (the “tetrasaccharide M [like] antigen”). The key aspect of this structure is the inclusion of the α-1,3 linkage whilst incorporating the minimal number of α-1,2 linkages thought necessary for M specific antibodies to bind; this has the effect of minimising the binding of non-M specific antibodies.

Analysis of the TSM Antigen

The structure of the antigen was confirmed by MALDI-ToF and ESI-QToF mass spectrometry. The monoclonal binding properties were confirmed by competitive ELISA whereby a standard polystyrene ELISA plate was coated with B. melitensis 16M sLPS antigen by passive absorption in carbonate buffer. The plate was co-incubated with the anti-M monoclonal antibody BM40 and native OPS from B. melitensis 16M, B. abortus S99, Y. enterocolitica O:9, the TSM antigen as well as buffer controls. After washing the plate, an HRP conjugate specific for the BM40 was added and incubated. After washing, the plates were developed with an HRP substrate to determine the degree to which mAb-conjugate binding had been inhibited.
The results (FIG. 5) demonstrated that the TSM antigen was able to inhibit the binding to a greater extent than the equivalent concentration of Y. enterocolitica O:9 OPS and to a similar degree as the B. abortus S99 OPS. Taking into account the monovalency of the TSM antigen compared to the multiple binding sites available on 16M OPS, the results provide strong evidence for specific TSM-antibody binding.
A similar competitive ELISA was conducted to measure the inhibition of binding of anti-A and anti-M rabbit hyperimmunised and absorbed monospecific sera (sera as described previously) using native OPS from B. melitensis 16M, B. abortus S99, Y. enterocolitica O:9, the TSM antigen as well as buffer controls. The results demonstrated preferential inhibition of the anti-M sera by the TSM (FIG. 6A) compared to the inhibition of the anti-A sera (FIG. 6B), in agreement with the theoretical expectations.
Application of the TSM Antigen to Serodiagnosis
The TSM antigen was then chemically conjugated to an ELISA plate to create an indirect ELISA and enable the evaluation of non-competitive antibody interactions. Owing to the highly soluble nature of the antigen and its small size, passive absorption to an ELISA plate surface was not straightforward. Instead, it was chemically conjugated to an ELISA plate surface functionalised with hydrazide groups on the end of spacer arms (Corning Carbo-BINDTM #2507). As described above, the hydrazide groups react spontaneously with aldehydes that may be created within carbohydrates by periodate oxidation.
The TSM antigen was incubated in 2 mM sodium metaperiodate, 50 mM sodium acetate buffer at pH 5.5 for 2.5 hours in the dark at 4° C. This was sufficient to oxidise the vicinal diol hydroxyl groups on the 2nd and 3rd carbons of the terminal sugar (Sussich et al. (2000) Carbohydr Res 329, 87-95), the only vicinal diol group within the molecule, to generate the structure shown below:




Competitive ELISA with BM40 anti-M monoclonal antibody was applied as described above to confirm that the oxidised TSM antigen (oxiTSM) shown above maintained its antibody interaction. Residual sodium metaperiodate was removed from the reaction by filtration of the TSM antigen and buffer through a short column of Sephadex G-10 (GE Healthcare) which reacted with the excess sodium metaperiodate and, with a suitable volume of elution buffer, allowed the oxiTSM antigen to flow through. Removal of the sodium metaperiodate was necessary to prevent any further oxidation of the oxiTSM and removal was confirmed by abrogation of the reaction with ABTS (2,2′-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt).
The oxiTSM antigen was then diluted to 10 μg/ml in 0.1 M sodium acetate buffer pH 5.5 and 100 μl was added per well to a Carbo-BINDTM plate which was incubated at 37° C. for 3 hrs. During this incubation process the aldehyde groups on the oxidised tetrasaccharide spontaneously reacted with the hydrazide groups on the end of a linker attached to the ELISA plate surface to form stable covalent hydrazone bonds, as shown below (the hydrazone bond is shown with a dotted circle):




After this time the plate was washed with 4 times 200 μl per well of phosphate buffered saline with 0.5% Tween-20 (PBS-T20) and tapped dry. These coated ELISA plates were used to test the field sera from cattle (described above) confirmed by culture to be infected with B. abortus (n=45) and from cattle without brucellosis but with serum cross reacting in one or more conventional serodiagnostic assay (n=68).
Serum was diluted 1/50 in buffer (Sigma #B6429) and 100 μl of this was added per well of the antigen coated plate, each sample tested in duplicate. The plate was incubated for 1 hr at room temperature on a rotary shaker at 160 rpm and then washed with PBS-T20 as described above. An HRP conjugated Protein-G conjugate (Thermo #31499), diluted to 1 μg/ml in buffer, was then added in 100 μl volumes to each well of the plate which is then incubated and washed as described above for serum. The plate was then developed with ABTS (2,2′-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt) and hydrogen peroxide substrate for 10-15 mins, stopped with 0.4 mM sodium azide and read at 405 nm wavelength. The optical density for the duplicates was averaged and the blank OD (buffer only instead of sera) was subtracted. This value was then expressed as a percentage of a common positive control serum sample from a Brucella infected bovine.
The TSM antigen iELISA was evaluated against the same population of bovine samples as described above for the evaluation of the B. melitensis 16M and Y. enterocolitica O:9 OPS iELISAs: 45 from B. abortus biovar 1 (A dominant) culture positive animals and 68 from false positive serological reactors. The results for the ELISA are shown in FIG. 7.
Further Antigen Oligosaccharide Conjugates—ELISA Titrations
To begin to determine the overall length of the oligosaccharide necessary to provide specificity for binding to anti-A or anti-M antibodies, synthetic pentasaccharide and nonasaccharide BSA conjugate antigens were evaluated against the bovine sera described above. Each antigen contains one internally and centrally positioned α-1,3 link with the remaining links being α-1,2.

The pentasaccharide had Formula XI:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-t-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (Formula XI)

The nonasaccharide had Formula XV:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (Formula XV)

In Formulae XI and XV above, the central 4,6-dideoxy-4-formamido-D-mannopyranose is underlined. The antigens were conjugated to BSA via a reducing end -1-O—(CH2)5—COO—CH3 linker as described above, to form structures 42 and 43, respectively, shown below.





In one experiment, BSA-carbohydrate-protein conjugates 42 and 43 (5 g/mL in PBS) were used to coat 96-well microtiter plates (MaxiSorp, Nunc) overnight at 4° C. The plate was washed 5 times with PBST (PBS containing 0.05% (v/v) Tween 20). Serial √10 dilutions of mAb YsT9.1 and Bm10 ascites fluids or supernatants form hybridoma cell culture were made in PBST containing 0.1% BSA. The solutions were distributed in duplicate on the coated microtiter plate and incubated at room temperature for 2 hours. The plate was washed with PBST (5 times) and goat anti-mouse IgG antibody conjugated to horseradish peroxidase (Kirkegaard & Perry Laboratories; 1:2000 dilution in 0.1% BSA/PBST; 100 L/well) was added. The mixture was then incubated for 1 hour. The plate was washed 5 times with PBST before addition of a 1:1 mixture 3,3′,5,5′-tetramethylbenzidine (0.4 g/L) and 0.02% H2O2 solution (Kirkegaard & Perry Laboratories; 100 L/well). After 2 minutes, the reaction was stopped by addition of 1 M phosphoric acid (100 L/well). Absorbance was read at 450 nm. End point titres are recorded as the dilution giving an absorbance 0.2 above background.
The monoclonal antibodies (YsT9-1 and BM10) previously shown to be specific for the Brucella A and M antigens (Bundle et al. (1989) Infect. Immun. 57, 2829-2836). were titred to their end point against the antigens 42 and 43 coated on ELISA plates (FIG. 8). The nonasaccharide antigen 43 binds anti-A and M specific antibodies with equivalent avidity, whereas the pentasaccharide 42 displays a preference for the M specific antibody, while still binding the A specific antibody but with an approximately 10 fold reduced avidity.
Previous studies showed the YsT9-1 and Bm10 antibodies possessed avidity differences of between 400-1,000 for the respective O-polysaccharide antigens (Bundle et al. (1989). Infect. Immun. 57, 2829-2836). As mentioned, the pentasaccharide antigen 42 shows a preference for M specific antibody.
Further Antigen-Oligosaccharide Coniugates—Serology Studies and Analysis
In a further experiment, the conjugates 42 and 43 were immobilised onto the surface of standard polystyrene ELISA plates passively via overnight incubation in carbonate buffer at 4° C. at 2.5 g/ml, 100 μl/well. The plates were washed as described above and incubated with a 1/50 dilution of sera in buffer (in duplicate)(see below) for 30 mins at room temperature at 160 rpm, after which time they were washed and tapped dry as described above. For bovine sera, an HRP-conjugated mouse anti-bovine IgG conjugate was used. The conjugates were diluted to working strength in buffer and the plates incubated, washed and tapped dry as for the serum incubation stage. The plate was then developed with ABTS (2,2′-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt) and hydrogen peroxide substrate for 10-15 mins, stopped with 0.4 mM sodium azide and read at 405 nm wavelength. The optical density for the duplicates was averaged and the blank OD (buffer only instead of sera) was subtracted. This value was then expressed as a percentage of a common positive control serum sample from a Brucella infected bovine.
The same method employed to evaluate bovine serum by iELISA with the pentasaccharide and nonasaccharide conjugates was used to evaluate bovine serum by a further four oligosaccharide BSA conjugates. The oligosaccharides were:

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (tetrasaccharide, Formula VIII)

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl   (trisaccharide (terminal α-1,3 link), Formula XVI)

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-2)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranosyl   (trisaccharide (terminal α-1,2 link), Formula XVII)

4,6-dideoxy-4-formamido-α-D-mannopyranosyl-(1-3)-4,6-dideoxy-4-formamido-α-D-mannopyranose   (disaccharide, Formula II)

These antigens were conjugated to BSA via a reducing end -1-O—(CH2)5—COO—CH3 linker as described above, to form structures similar to 42 and 43 shown above. Since conjugation occurs via the reducing end, the link at the non-reducing end is referred to as the “terminal link”.

The BSA-nonasaccharide, pentasaccharide, tetrasaccharide, trisaccharide and disaccharide conjugate iELISAs (and the oxiTSM iELISA described above) were evaluated against the same population of bovine field samples as described above for the evaluation of the B. melitensis 16M and Y. enterocolitica O:9 OPS iELISAs; that is, 45 from B. abortus biovar 1 (A dominant) culture positive animals and 68 from false positive serological reactors. The results for these iELISAs, shown by scatter plot in FIGS. 7 and 9 to 11, were evaluated to find the optimal Youden Index for each iELISA and ROC analysis was used to determine the ROC Curves and AUC. This data is presented in Table 7 below, along with the 95% confidence intervals for the AUC; Table 7 shows the data from Table 3 and the additional oligosaccharide data, for ease of comparison. Table 8 shows the probability (P) values for the testing of statistically significant differences between the AUC data from each antigen assay. The AUCs were all compared against each other and the P values was calculated using the Normal Distribution model. The evaluation was 1-tailed as the prior hypothesis under investigation was that antigens that were more ‘M’ like would have higher AUC values. As with Table 7, Table 8 shows the earlier information from Table 4 with the additional oligosaccharide data.
A selection of ROC curves are shown in FIG. 12. The Figure shows the ROC curves for both native antigens tested and amply demonstrates the superiority of the B. melitensis 16M OPS over the Y. enterocolitica O:9 OPS. The data from the M-like synthetic BSA-pentasaccharide, BSA-tetrasaccharide and BSA-disaccharide conjugate iELISAs is also shown and graphically depicts the improvement in diagnostic performance that is commensurate with the reduction of α-1,2 linkages in the structures and retention of the α-1,3 link.







TABLE 7







Performance statistics for OPS and Synthetic Oligosaccharide


iELISAs as tested on bovine sera










Optimal Youden Index












%
(YI = DSn + DSp − 1)
ROC - Area Under Curve














age
YI



95%



α-1,3
Esti-
DSn
DSp

Confidence


Assay
links
mate
%
%
AUC
Interval
















Y. entero-
0
0.1297
64.44
48.53
0.5065
0.3964-0.6167


colitica


O:9 OPS


iELISA


B. melitensis
20
0.4232
55.56
86.76
0.7065
0.6024-0.8106


16M OPS


iELISA


Nona-
12.5
0.5713
68.89
88.24
0.8317
0.7512-0.9122


saccharide


iELISA


Penta-
25
0.6174
95.56
66.18
0.8667
0.8019-0.9314


saccharide


iELISA


Tri-
50
0.6091
73.33
86.76
0.8672
0.7976-0.9367


saccharide


(terminal


α-1,2)


iELISA


oxiTSM
33.3/50
0.6670
73.33
92.65
0.8948
0.8345-0.9550


iELISA


Tri-
50
0.7268
80.00
92.65
0.8987
0.8334-0.9640


saccharide


(terminal


α-1,3)


iELISA


Tetra-
33.3
0.6745
73.33
94.12
0.9046
0.8478-0.9613


saccharide


iELISA


Di-
100
0.7860
84.44
92.65
0.9310
0.8345-0.9550


saccharide


iELISA
















TABLE 8







Comparison of ROC AUC statistics for the OPS and Synthetic Oligosaccharide iELISAs as tested on bovine sera
















Difference between AUC (P = [one-tailed])
YeO9
Bm
Bm/Ye
NS
PS
Tri t1,2
OxiTSM
Tri t1,3
Tetra



















Y. enterocolitica O:9 OPS iELISA











(YeO9)


B. melitensis 16M OPS iELISA
<0.0001


(Bm)


Bm16M/YeO:9 (Bm/Ye)
<0.0001
0.0239


Nonasaccharide iELISA (NS)
<0.0001
0.0032
0.3050


Pentasaccharide iELISA (PS)
<0.0001
0.0005
0.0918
0.1003


Trisaccharide (terminal α-1,2)
<0.0001
0.0007
0.1093
0.2148
0.4920


iELISA (Tri t1,2)


oxiTSM iELISA (oxiTSM)
<0.0001
<0.0001
0.0239
0.0307
0.1867
0.2005


Trisaccharide
<0.0001
<0.0001
0.8080
0.0384
0.1736
0.1949
0.4522


(terminal α-1,3) iELISA (Tri t1,3)


Tetrasaccharide iELISA (Tetra)
<0.0001
<0.0001
0.0228
0.0146
0.0853
0.0359
0.3632
0.4207


Disaccharide iELISA (Di)
<0.0001
<0.0001
0.0158
0.0087
0.0322
0.0322
0.1379
0.0901
0.2005









The data presented in Table 7 show the antigens in ascending AUC value (lowest at the top and highest at the bottom). In this context, the AUC represents the ability of the assay to correctly classify samples from animals that are Brucella infected and those that are not. In this data analysis, all the samples from animals that were not Brucella infected were falsely positive in one or more conventional serodiagnostic assays for brucellosis. The results (based on the AUC data) show that the B. melitensis OPS is superior to the Y. enterocolitica O:9 OPS and it is proposed that this is due to the presence of α-1,3 links within the OPS of the former. The percentage of links within the antigenic structures that are α-1,3 (the remainder being α-1,2) is also shown in the table.
In general, the AUC values increase with the increase in the percentage of α-1,3 links within the antigen (and decrease in α-1,2 links). This is clearly evident in the comparison of the two native OPS antigens and is also evident in the AUC data for the nonasaccharide, pentasaccharide, tetrasaccharide and disaccharide BSA conjugates. There are, however, some nuances within the data that should be considered as described below with regard to the comparison between the nonasaccharide BSA conjugate and B. melitensis 16M OPS, the oxidised tetrasaccharide antigen and the two trisaccharide BSA conjugates.
All the synthetic BSA conjugated oligosaccharide antigens have superior diagnostic capability in this regard compared to the native OPS antigens. This includes the nonasaccharide BSA-conjugate which has proportionally fewer α-1,3 links than the B. melitensis 16M OPS. This apparent anomaly may due to do with the precise positioning of the α-1,3 links within the native structure and the multivalent nature in which antibodies may bind this structure.
It is not straightforward to evaluate the performance of the oxiTSM antigen relative to the others investigated due to the methodological differences, not least the breaking of the terminal perosamine, linking directly to a functionalised ELISA plate surface from the remnants of this structure and thus presenting the reducing sugar as the tip of the antigen. For this reason, the percentage of α-1,3 links presented in Table 7 is shown as 33.3/50 dependent upon the undetermined significance of the link to the oxidised terminal “perosamine”. Despite these apparent impediments, the oxiTSM iELISA possessed a greater AUC value than the BSA-pentasaccharide and α-1,2 terminated BSA-trisaccharide conjugate iELISAs. This may be due to the loss of the terminal end ‘tip’ epitope, since this is not presented by the oxiTSM antigen due to the oxidation and conjugation of the terminal sugar. The natural ‘tip’ antigen would be similar in the OPS from A and M dominant Brucella and Y. enterocolitica O:9. This ‘tip’ epitope may also explain the higher AUC value for the α-1,3 terminated trisaccharide compared to the α-1,2 terminated trisaccharide. According to the structural scheme recently presented (Kubler-Kielb & Vinogradov (2013) Carbohydr. Res. 378, 144-147), the tip of most OPS molecules in M dominant OPS is a α-1,2 linked disaccharide, as would also be the case in the OPS from A dominant Brucella strains and from Y. enterocolitica O:9. The α-1,3 terminated trisaccharide does not present such a tip and thus common anti-‘tip’ epitope antibodies may be less likely to bind in comparison to the antibodies against the linear M epitope.
The highest AUC value is generated by the BSA-disaccharide conjugate iELISA. This was significantly higher (P=0.0322) than the AUC value for the BSA-pentasaccharide conjugate iELISA which was itself significantly higher than the AUC value derived from the native antigens (Y. enterocolitica O:9 and B. melitensis 16M OPS) The disaccharide has no α-1,2 links present, just a single α-1,3 link. On the basis of this data, this structure is highly functional and represents the minimal size M epitope. The ability of such a small structure to bind to so many polyclonal antibodies and to do so in such a selective manner is a surprising finding. The negative impact of even a single α-1,2 link was just as unexpected. The ability and the extent to which the disaccharide (and the other M-like oligosaccharides), can selectively bind to polyclonal sera raised by infection with A dominant strains of Brucella was also unexpected, but has been demonstrated here for the first time.
The data from the Max YI values largely agree with the AUC data in that the smaller BSA-oligosaccharides conjugates with fewer α-1,2 links provide superior diagnostic parameters. The main difference is the superior Max YI value for the α-1,3 terminated BSA-trisaccharide conjugate compared to the BSA-tetrasaccharide conjugate. This can be rationalised by the arguments put forward above with regards to the reduction of the ‘tip’ epitope as well as the elimination of a α-1,2 link.
All of the BSA-oligosaccharide conjugate iELISAs were also applied to the sera from the eight animals, described above, that were experimentally infected with either B. abortus strain 544 (n=4) or Y. enterocolitica O:9 (n=4). Only samples collected from weeks 3, 7, 16 and 24 were tested because the samples collected from the B. abortus infected animals at week 53 gave ambivalent results with conventional serodiagnostic assay.
The results for the samples from the experimentally infected cattle are shown in FIGS. 13 to 19. FIG. 13 shows the results from B. melitensis 16M OPS iELISA and demonstrates that there is a considerable response from the sera derived from the Y. enterocolitica O:9 infected animals. FIGS. 14 and 15 show the data derived from the nonasaccharide and pentasaccharide BSA conjugate iELISAs respectively. The results from the B. melitensis 16M OPS iELISA and pentasaccharide BSA conjugate iELISA are shown against each other in a simple scatter plot in FIG. 16. FIGS. 17 and 18 show the data derived from the tetrasaccharide and disaccharide BSA conjugate iELISAs respectively. Although the ability to differentiate between the antibodies derived from the two infection types is not absolute, FIG. 18 shows that the disaccharide is close to achieving this aim. This differentiation is more readily visible in the scatter plot, FIG. 19, showing the results from the tetrasaccharide and disaccharide BSA conjugate iELISAs.
All the serological data from the samples from the experimentally infected animals (weeks 3, 7, 16 and 24) were evaluated by the following quantitative criteria. The percentage (of 16) samples from the cattle experimentally infected with Y. enterocolitica O:9 with quantitatively greater serological titres than the lowest titre sample from cattle experimentally infected with B. abortus strain 544 was calculated. The percentage is shown, for each serodiagnostic assay, in Table 9. The CFT, SAT, sLPS iELISA and cELISA and FPA data has been published previously (McGiven et al. (2008) J. Immun. Meth. 20, 7-15) and shows the significant degree of cross reaction that occurs with conventional and contemporary serology.
Although the data set is relatively small, the results show that the disaccharide and the trisaccharide BSA conjugate iELISAs (using the trisaccharide with a α-1,3 link at the non-conjugated terminus) were the best at differentiating between antibodies derived from the two types of infection. This demonstrates that as well as providing improved diagnostic specificity when testing field FPSRs, the disaccharide has the same beneficial effect with the samples that have been experimentally infected with a Gram-negative bacteria in possession of the OPS structure that is most similar to that of Brucella. In this sample set, the results from the nonasaccharide, pentasaccharide, tetrasaccharide and α-1,2 terminated trisaccharide BSA conjugate iELISAs showed no advantage over the B. melitensis 16M OPS iELISA. The two worst performing assays in this respect, both with a percentage of 81.25, were the iELISAs performed using the sLPS from B. abortus S99 (an A dominant strain) and the Y. enterocolitica O:9 OPS iELISA. This reflects the high degree of similarity between the OPS structures of these organisms.







TABLE 9







Percentage (of 16) samples from cattle experimentally infected with Y.


enterocolitica O:9 with quantitatively greater serological titres than the


lowest titre sample from cattle experimentally infected


with B. abortus strain 544









Percentage of samples














Classical tests and native antigens




Complement Fixation Test
31.25



Serum Agglutination Tests
56.25



iELISA (sLPS, B. abortus S99)
81.25



cELISA (sLPS, B. melitensis 16M)
43.75



Fluorescence Polarisation Assay
50.00



Y. enterocolitica O:9 OPS iELISA
81.25



B. melitensis 16M OPS iELISA
56.25



Synthetic oligosaccharide antigens



Nonasaccharide
56.25



Pentasaccharide
75.00



Tetrasaccharide
75.00



Trisaccharide (terminal 1, 2)
68.75



Trisaccharide (terminal 1, 3)
18.75



Disaccharide
12.50










The nonasaccharide, pentasaccharide, tetrasaccharide and disaccharide BSA-conjugate iELISAs were also evaluated against 125 serum samples from 125 randomly sampled non-Brucella infected cattle. The results are presented by scatter plot, with the results from the Brucella infected cattle (n=45), in FIGS. 20 (nonasaccharide and pentasaccharide) and 21 (tetrasaccharide and disaccharide).







TABLE 10







Performance statistics for Synthetic Oligosaccharide iELISAs as


tested on bovine sera(randomly sampled non-Brucella infected)










Optimal




Youden Index



(YI = DSn +
ROC - Area



DSp − 1)
Under Curve













YI



95%



Esti-



Confidence


Assay
mate
DSn %
DSp %
AUC
Interval















Nonasaccharide
0.9920
100.0
99.20
0.9998
0.9992-1.000 


iELISA


Pentasaccharide
1.0000
100.0
100.0
1.0000
1.000-1.000


iELISA


Tetrasaccharide
0.9476
95.56
99.20
0.9964
0.9911-1.000 


iELISA


Disaccharide
0.8142
82.22
99.20
0.9108
0.8401-0.9814


iELISA









The results, shown in scatter plot FIGS. 20 and 21 and Table 10, demonstrate that the nonasaccharide, pentasaccharide and tetrasaccharide BSA-conjugate iELISAs are highly effective serodiagnostic assays. The data also suggests that the disaccharide BSA-conjugate iELISA is less effective in differentiating between these sample types than the other, larger, oligosaccharides in possession of α-1,2 links. When the disaccharide BSA-conjugate is used, the sera from the randomly sampled non-Brucella infected cattle have a much more similar response to that observed for the FPSR samples than is the case with the nonasaccharide, pentasaccharide and tetrasaccharide BSA-conjugate iELISAs.
The oxiTSM, BSA-pentasaccharide and BSA-nonasaccharide antigens have also been applied to the detection of specific anti-Brucella antibodies in small ruminant sera. The oxiTSM antigen was conjugated to the Carbo-BINDTM ELISA plates by the same method as described above and the BSA conjugated oligosaccharides were coated to ELISA plates by the same method as described above. The assay was completed using the same method as described for bovine sera above except for the use of a protein G HRP conjugate. In total, 61 samples were evaluated from individual sheep and goats from flocks confirmed as infected with B. melitensis biovar 3 (mixed ‘A’ and ‘M’ dominance) and positive in iELISA using B. melitensis sLPS antigen. Also tested were 94 sera from sheep and goats from Great Britain, that has always been free of B. melitensis (FIG. 22).
In FIG. 22, the lowest x-axis value for a sample from the Brucella infected population is 32.5, so there is no data from this population hidden in the overplotting of the data from the non-Brucella infected population. The optimised YI value for the 16M OPS iELISA was 0.984 (95% CI=0.952−1.000) and that of the ‘M’ tetrasaccharide iELISA was 0.816 (95% CI=0.720−0.912). The 95% confidence intervals for two YI values do not overlap, demonstrating a significant difference in diagnostic performance. However, the data does demonstrate that the TSM antigen does detect anti-Brucella antibodies within sera from small ruminants infected with B. melitensis. The data in FIG. 23 demonstrates the effectiveness of the universal nonasaccharide conjugate antigen as, based on this sample set, the DSn and DSp were both 100%.
Finally, ELISA plates were coated with co-povidone disaccharide conjugates 99a and 99b as described above for BSA conjugates. Serial √10 dilutions of human sera from a patient infected with Brucella suis was applied to the plate and bound antibody was detected by a goat anti human horse radish peroxidase conjugate. The results are shown in FIG. 24. This demonstrated that the disaccharide can detect infection by Brucella in a sample from a human patient.
Antibody Binding Studies
BSA conjugates 98 (comprising the oligosaccharide of Formula XIV) and copovidone conjugate 100b (comprising an oligosaccharide which is exclusively α-1,2 linked) were each coated on ELISA plates as described above. Serial √10 dilutions of mouse monoclonal antibodies that are A or M specific were applied to the plate and bound antibody was detected by a goat anti mouse IgG horse radish peroxidase conjugate. Antibodies YsT9.1 and YsT9.2 are anti-A antibodies. Antibodies BM10 and BM28 are M-specific. The results are shown in FIGS. 25 and 26 and demonstrate the binding specificity of the disaccharide, as well as the failure of an exclusively α-1,2 linked oligosaccharide conjugate to bind to an anti-M antibody.
To evaluate the binding of an anti-M specific mAb to the BSA-tetrasaccharide, trisaccharide and disaccharide conjugates, they were each coated to ELISA plates at 5 pg per ml (in pH 10.0 carbonate buffer), double diluted in neighbouring ELISA plate wells and the plates were incubated and washed as described previously for the bovine serum iELISAs with the BSA conjugates. A working strength dilution of HRP-conjugated BM40 mAb was added to each well and this was incubated for 30 mins at room temperature and then washed as described previously. The plates were developed with HRP ABTS substrate and the reaction stopped after 15 mins by addition of sodium azide. The ELISA plates were read at 405 nm to measure the optical density of each well.
The results (FIG. 27) show that the BM40 mAb binds to the BSA conjugates; most effectively to the trisaccharide and also, almost equally, to the tetrasaccharide and disaccharide BSA conjugates. The binding of the BM40 mAb to these three BSA-oligosaccharide structures demonstrates the presence of the M epitope within them as BM40 has been previously shown to be highly specific to M dominant OPS. As well as binding BM40 mAb, the inventors have shown that these structures also bind polyclonal sera. Therefore, it would be possible to simultaneously incubate both the HRP conjugated BM40 mAb and serum antibodies in order to create a competitive ELISA for the detection of polyclonal antibodies in serum. The ability to do this with the disaccharide is particularly noteworthy as this is already the antigen that provides the best resolution of FPSRs, incorporating a competitive element into the immunoassay is expected to yield further improvements in diagnostic capability.
Vaccination Study
A vaccine glycoconjugate comprising an oligosaccharide formed by exclusively -(1-2)- linked 4,6-dideoxy-4-acylamido-α-pyranose units, the oligosaccharide covalently linked to a carrier protein such as tetanus toxin, is evaluated for vaccine efficacy as follows. The procedures are based upon the standard model of vaccine efficacy testing as described with the OIE Manual of Diagnostic Tests and Vaccines (Nielsen et al. (2009) In: Manual of Diagnostic Tests & Vaccines for Terrestrial Animals 2009; Office International Des Epizooties, Paris, Chapter: Bovine brucellosis, pg 22-29). Control and challenge groups of mice are established for evaluation. For example, control group 1—‘vaccination’ with PBS only; control group 2—vaccination with unconjugated ‘A’ oligosaccharide and tetanus toxoid plus adjuvant; control group 3—subcutaneous vaccination with 1×105 CFU per mouse of reference vaccine B. abortus strain S19. The vaccine challenge groups are group 4—vaccination with type ‘A’ oligosaccharide tetanus toxoid glycoconjugate; and group 5—vaccination with type ‘M’ oligosaccharide tetanus toxoid glycoconjugate. Following vaccination mice are challenged by intraperitoneal inoculation with 2×105 CFU (per mouse) of B. abortus strain 544. At 15 days post challenge mice are euthanised and the number of Brucella cells within their spleens enumerated to provide a metric of protection. The mice are also bled and serology performed to determine the antibody response from each group to the ‘A’ and ‘M’ epitopes. This provides a means by which to evaluate the DIVA potential of the oligosaccharide tetanus toxoid glycoconjugate.

## Claims

1. A method of detecting in a sample the presence of an anti-M and/or anti-A and/or anti-C/Y antibody, the method comprising contacting the sample with a diagnostic conjugate comprising an oligosaccharide which consists of 2-15 units of 4,6-dideoxy-4-acylamido-α-pyranose, wherein at least two 4,6-dideoxy-4-acylamido-α-pyranose units are linked with a -(1-3)- link, in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity, wherein detection of binding of an antibody in the sample to the diagnostic conjugate is indicative of the presence in the sample of an anti-M and/or anti-A and/or anti-C/Y antibody.

2. The method of claim 1, wherein the diagnostic conjugate is a universal antigen, capable of binding to an anti-M antibody or to an anti-A antibody or to an anti-C/Y antibody.

3. The method of claim 1, wherein the oligosaccharide comprises no does not have more than one -(1-3)- link.

4. The method of claim 1, wherein the oligosaccharide consists of two, three or four 4,6-dideoxy-4-acylamido-α-pyranose units.

5. The method of claim 4, wherein the diagnostic conjugate is a specific M-antigen, capable of preferentially binding to an anti-M antibody and wherein detection of binding of an antibody in the sample to the diagnostic conjugate is indicative of the presence in the sample of an anti-M antibody.

6. The method of claim 1, wherein the oligosaccharide is a tetrasaccharide of Formula VII, wherein Formula VII is 4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-3)-4,6-dideoxy-4-acylamido-α-pyranosyl-(1-2)-4,6-dideoxy-4-acylamido-α-pyranose.

7. The method of claim 1, wherein the diagnostic conjugate comprises an oligosaccharide which consists of 6-15 4,6-dideoxy-4-acylamido-α-pyranose units and comprising overlapping tetrasaccharides of Formula VII, such that a third and fourth 4,6-dideoxy-4-acylamido-α-pyranose units in one tetrasaccharide form a first and second 4,6-dideoxy-4-acylamido-α-pyranose units in the next tetrasaccharide, to form an oligosaccharide in which the links between contiguous 4,6-dideoxy-4-acylamido-α-pyranose units are alternating -(1-2)- and -(1-3)- links; in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom.

8. The method of claim 1, wherein the diagnostic conjugate comprises oligosaccharide which consists of 7-15 4,6-dideoxy-4-acylamido-α-pyranose units and comprising overlapping tetrasaccharides of Formula VII, such that a fourth 4,6-dideoxy-4-acylamido-α-pyranose unit in one tetrasaccharide forms the a 4,6-dideoxy-4-acylamido-α-pyranose unit in the next tetrasaccharide; in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom.

9. The method of claim 1 wherein, in the oligosaccharide, R is methyl, ethyl or butyl.

10. The method of claim 1, wherein at least one 4,6-dideoxy-4-acylamido-α-pyranosyl unit is 4,6-dideoxy-4-formamido-α-D-mannopyranosyl.

11. The method of claim 1, wherein the non-saccharide molecule is selected from the group consisting of a protein, Bovine Serum Albumin (BSA), a non-protein carrier molecule comprising hydrophobic elements, and a fluorophore.

12. The method of claim 1, wherein the oligosaccharide is linked to a solid entity via a protein, via Bovine Serum Albumin (BSA), or via hydrazone conjugation.

13. The method of claim 1, wherein the sample is a biological sample obtained from an animal.

14. The method of claim 13, wherein the biological sample is a blood, plasma, serum, tissue, saliva or milk sample.

15. A method of detecting in a sample the presence of an anti-Brucella antibody, the method comprising contacting the sample with a diagnostic conjugate comprising an oligosaccharide which consists of two, three or four units of 4,6-dideoxy-4-acylamido-α-pyranose, wherein two 4,6-dideoxy-4-acylamido-α-pyranose units are linked with a -(1-3)- link, in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity, wherein detection of binding of an antibody in the sample to the diagnostic conjugate is indicative of the presence in the sample of an anti-Brucella antibody, and wherein the anti-Brucella antibody is not an anti-B. suis biovar 2 or an anti-B. inopinata BO2 antibody.

16. A method of determining that an animal is or has been infected with a Brucella organism, the method comprising contacting a first sample obtained from the animal with a first diagnostic conjugate and detecting binding of the first diagnostic conjugate to at least one antibody present in the sample, the first diagnostic conjugate comprising an oligosaccharide which consists of 6-15 units of 4,6-dideoxy-4-acylamido-α-pyranose, wherein at least two 4,6-dideoxy-4-acylamido-α-pyranose units are linked with a -(1-3)- link, in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity; the method further comprising a second step of contacting a second sample obtained from the animal with a second diagnostic conjugate comprising an oligosaccharide which comprises two, three or four units of 4,6-dideoxy-4-acylamido-α-pyranose, wherein at least two 4,6-dideoxy-4-acylamido-α-pyranose units are linked with a -(1-3)- link, in which the carbon at position 5 in the pyranose is linked to an R group, where R is independently selected from —CH2OH, —H or an alkyl group having at least one C atom, the oligosaccharide being covalently linked to a non-saccharide molecule or to a solid entity; and detecting binding of the second diagnostic conjugate to at least one antibody present in the sample; wherein detection of binding in both the first and the second steps is indicative of infection of the animal by a Brucella organism, and wherein the Brucella organism is not B. suis biovar 2 or B. inopinata BO2.