# January 2009 F lorida Depar tment of Ag riculture
and C onsumer Ser vices 

# Caloosahatchee River Watershed Protection Plan

# Caloosahatchee River Watershed
Protection Plan

January 2009

Prepared by:



### South Florida Water Management District

Florida Department of Environmental Protection

Florida Department of Agriculture and Consumer Services

Consulting Services Provided by:



### Jordan, Jones & GouldingAcknowledgements

Caloosahatchee River Watershed Protection Plan January 2009 

## ACKNOWLEDGEMENTS

The Coordinating Agencies appreciate the active participation and many contributions of the following local go vernments, organizations and agencies toward development of the Caloosahat chee River Watershed Protection Plan:

Lee County Hendry County Glades County City of Sanibel City of Cape Coral City of Fort Myers City of Fort Myers Beach City of LaBelle Southwest Florida Regi onal Planning Council Charlotte Harbor National Estuary Program East County Water Control District Lee County Hyacinth Control District University of Florida- IFAS Florida Gulf Coast University Sanibel-Captiva Conservation Foundation Conservancy of Southwest Florida The Nature Conservancy
Audubon of Florida
Audubon of Southwest Florida Collier County Audubon Society
Sierra Club
Riverwatch
Gulf Citrus Growers Association
PURRE Water Coalition
Southwest Florida Watershed CouncilExecutive Summary

Caloosahatchee River Watershed Protection Plan January 2009 1 

### EXECUTIVE SUMMARY

The Caloosahatchee River Watershed Protectio n Plan (preferred Plan) was developed by the South Florida Water Management District (SFWMD) in cooperati on with the Florida Department of Environmental Protection (FDEP) , the Florida Department of Agriculture and Consumer Services (FDACS), Lee County, and ot her affected counties and municipalities – along with a diversity of other stakeholder and public input.

Similar to the Lake Okeechobee Watershed Cons truction Project Phase II Technical Plan, a comprehensive and systematic, multi-agency process was implemented to develop the
Caloosahatchee River Watershed Protection Plan. On e of the first steps in this plan development process was to inventory existing and plan ned restoration programs and projects (e.g., Comprehensive Everglades Restoration Plan) an d determine the cumulative benefit provided by those initiatives. The cumulative benefit was then compared to the identified objectives of the watershed protection plan to determine if gaps still existed and whether additional projects or programs would be necessary. Key identified objectives include:

• Reducing nutrient loads to meet any adopt ed Total Maximum Daily Loads (TMDLs). It should be noted that TMDLs for nutrients are currently under development by FDEP; hence, an interim goal to “maximize reductions in nutrient loads to the estuary” was used for plan development.

• Reducing the frequency and duration of undesi rable salinity ranges in the estuary while meeting other water related needs such as water supply and flood protection.

A set of four alternatives was developed and revi ewed. Alternatives were evaluated for nitrogen load removal, phosphorus load removal and water quantity performance. The alternatives were formulated with input from an interagency wo rking team. The resulting Caloosahatchee River
Watershed Protection Plan combines the Waters hed Construction Project, Watershed Pollutant Control Program and Watershed Research a nd Water Quality Monitoring Program into a comprehensive approach that best meets the legislative goals.

The preferred Plan identifies the best combination of watershed storage and water quality projects needed to help improve the quality, timing and distribution of water in the natural ecosystem. More specifically, th e preferred Plan includes the Ca loosahatchee River (C-43) West Basin Storage Reservoir, best management prac tices (BMPs) and regulat ory programs, regional water quality projects with an emphasis on nitrogen reduction, additional storage in the
freshwater basins and local wa ter quality/quantity projects.

Working in concert with the expected re sults from implementing the Lake Okeechobee Watershed Construction Project, Phase II Techni cal Plan, the Caloosahatchee River Watershed
Protection Plan includes:

• Implementation of best management practices on more than 430,000 acres of agricultural lands and 145,000 acres of urban lands;

• Completion of proposed regul atory rule revisions;Executive Summary

Caloosahatchee River Watershed Protection Plan January 2009 2 • Construction of approximately 36,000 acres of reservoirs and 15,000 acr es of Stormwater Treatment Areas (STAs) and Wa ter Quality Treatment Areas;

• Potential reduction of total phosphorus lo ads to the Caloosahatchee Estuary by 166 metric tons per year (39 percent) and total nitrogen loads by 1,840 metric tons per year (38 percent);

• Restoration of more than 2,000 acres of wetlands within the Caloosahatchee River Watershed; and

• Provision of approximately 400,000 acre-feet of water storage within the Caloosahatchee River Watershed (in addition to the 900,000 acre- feet of identified storage needs in the Lake Okeechobee Watershed).

The preferred Plan also include s recommendations to expand ex isting estuarine and watershed monitoring programs and to initiate five applie d research projects to track progress towards achieving the plan’s objectives. Total phosphorus and total nitrogen load reduction performance will be revisited once the TMDLs are formally adopted by FDEP, which will provide specific loading rates, compliance loca tions, and compliance methodology.

As required by the legislation, the preferred Plan avoids impacts to other wa ter-related needs of the region and actually improve s water supply by reducing the fr equency of unmet irrigation demands and the frequency and volume of Lake Okeechobee Service Area cutbacks.

The Caloosahatchee River Watershed Protection Plan meets the intent of the legislative directive by providing significant nutrient lo ad reductions and decreases in damaging local discharges to the estuary; building upon existing and planned programs and projects; minimizing real estate acquisition requirements by promoting the involvem ent of private landowners as partners and emphasizing the use of publicly-owned lands; and accentuating both cost-effective local features and select regional projects.

Implementation will be based on a phased-approach. Phase I in cludes projects initiated or
constructed between 2009 and 201 2, followed by Phase II projec ts initiated between 2013 and 2018. The Long-Term Implementation Phase will include project s initiated beyond 2018.

The preferred Plan includes many existing projec ts and programs and assumes these efforts will continue; therefore, a variety of federal, state, a nd local funding sources will be used. Cost estimates, potential funding sources, and cost assumptions are provided below for each preferred Plan component included in Phase I (with the exception of urban BM Ps where the costs reflect full implementation with no phasing

. Schedules for urban BMP implementation will be addressed in the Basin Management Action Plan development process) . Costs for each progressive phase of implementation will be deve loped as more detailed project designs and information from various projec ts and studies are available.

Phase I implementation cost estimates:

• Watershed Pollutant Control Program -- Agricultural BMPs : $3.3-$4.0 million from state, SF WMD and/or local funds
-- Urban BMPs : $663-$809 million from state and local funds (total – no phasing)Executive Summary

Caloosahatchee River Watershed Protection Plan January 2009 3 • Watershed Construction Project -- Regional Projects: CERP - $524-$781 million; 50:50 cost-share state and federal funds Non-CERP - $117-175 million from state, SFWMD, and/or local funds -- Local Projects: $15 million from state funds

• Watershed Research and Water Quality Monitoring Program

-- $5.2 million in state and local funds

The Caloosahatchee River Watershed Protection Plan is based on the be st available information to date – incorporating agricultural and urban best management prac tices to reduce pollutants at the source and “green technologies” to help remove excess nutrients a nd improve water quality. As additional data and understanding of the dynamics of the watershe d are developed and analyzed, plan features may be modified. Plan revisions will be included in the three-year plan updates, as required by the legislation. This approach allows for m aximum flexibility for implementing proposed and additional management measures to achieve any adopted nutrient TMDLs, desirable salinity ranges, flow regimes and related restoration goals for the Caloosahatchee River and Estuary.

Caloosahatchee River Watershed Protection Plan Boundary and Sub-WatershedsTable of Contents

Caloosahatchee River Watershed Protection Plan January 2009
i TABLE OF CONTENTS

LIST OF ABBREVIATIONS

1. WATERSHED HISTORY AND PREF ERRED PLAN HIGHLIGHTS............................ 1-1

2. INTRODUCTION .............................................................................................................. 2- 1

3. PLANNING PROCESS...................................................................................................... 3-1

4. INTERAGENCY COORDINATION AN D PUBLIC INVOLVEMENT ......................... 4-1

5. TOTAL MAXIMUM DAILY LOADS (TMDLs) ............................................................. 5-1

6. CALOOSAHATACHEE RIVER WATERSH ED CONSTRUCTION PROJECT............ 6-1

6.1 MANAGEMENT MEASURES ................................................................................ 6.1-1

6.2 WATER QUANTITY ANALYSIS METHOD......................................................... 6.2-1

6.3 WATER QUALITY ANALYSIS METHOD AND BASE CONDIT ION
CHARACTERIZATION ........................................................................................... 6.3-1

6.4 FORMULATION OF A LTERNATIVE PLANS...................................................... 6.4-1

6.5 ALTERNATIVE PLAN EVALUATI ON AND COMPARISON ............................ 6.5-1

7. CALOOSAHATCHEE RIVER WATER SHED POLLUTANT CONTROL

PROGRAM....................................................................................................................... .. 7-1

8. CALOOSAHATCHEE RIVER WATERSHED RESEARCH AND WATER QUALITY
MONITORING PROGRAM SUMMARY ........................................................................ 8-1

9. PREFERRED PLAN PROJEC TS AND ACTIONS .......................................................... 9-1

10. LITERATURE CITED ..................................................................................................... 10-1

APPENDICES

A – Performance Measure and Performance Indicator Fact Sheets

B – Management Measure Tool Box and Fact Sheets

C – Northern Everglades Regional Simulation Model

D – Nutrient Loading Rates, Reduction Factor s and Implementation Costs Associated with

BMPs and Technologies

E – Caloosahatchee River Watershed Resear ch and Water Quality Monitoring Program

F – Plan Operations & Maintenance, Permitting, and Monitoring

G – Potential Funding Sources

H – Agency and Public Comments and ResponsesList of Abbreviations

Caloosahatchee River Watershed Protection Plan January 2009
ii LIST OF ABBREVIATIONS

ac acre ac-ft acre-feet AFSIRS Agricultural Field Scale Irrigation Requirement Simulation ASR aquifer storage and recovery BMAP Basin Management Action Plan BMP best management practice BOD biological oxygen demand
BOD 5 5-day biochemical oxygen demand
CBASE Current Base CERP Comprehensive Evergl ades Restoration Plan CESWQ Caloosahatchee Estuary Water Quality Monitoring cfs cubic feet per second CH3D Curvilinear Hydrodynamics 3-Dimensional CIP Capital Improvement Plan
CWA Clean Water Act DO dissolved oxygen DON dissolved organic nitrogen DTKN dissolved total Kjeldahl nitrogen
ECAL East Caloosahatchee ECWCD East County Water Control District EFDC Environmental Fluid Dynamics Code EIS Environmental Impact Statement ERC Environmental Regulation Commission
ERP Environmental Resource Permit ET evapotranspiration
F.A.C. Florida Administrative Code FDACS Florida Department of Agri culture and Consumer Services FDEP Florida Department of Environmental Protection FDER Florida Department of Environmental Regulation FDOH Florida Department of Health FDOT Florida Department of Transportation FLUCCS Florida Land Use, Covers, and Forms System
F.S. Florida Statutes
ft feet
FWRA Florida Watershed Restoration Act
ha hectares HIS Habitat Suitability Index HSPF Hydrological Simulation Program—Fortran IRL-S PIR Indian River Lagoon- South Final Integrated Project Implementation Report and
Environmental Statement
km kilometer
km 2 square kilometer LDR Land Development Regulations lb/yr pounds per yearList of Abbreviations

Caloosahatchee River Watershed Protection Plan January 2009
iii lb/ac/yr pounds per acre per year
LCH Lower Charlotte Harbor LOER Lake Okeechobee and Estuary Recovery
LOFT Lake Okeechobee Fast Track
LOPA Lake Okeechobee Protection Act LORSS Lake Okeechobee Regulation Schedule Study
LOSA Lake Okeechobee Service Area
LOP2TP Lake Okeechobee Watershed Construc tion Project, Phase II Technical Plan LOWQM Lake Okeechobee Water Quality Model LOWSM Lake Okeechobee Water Shortage Management

m meter

m 2 square meter MGD million gallons per day mg/L milligrams per liter
mi mile
mi 2 square mile MS4 Municipal Separate Storm Sewer Systems
mt metric ton mt/yr metric tons per year N nitrogen NEEPP Northern Everglades and Estuaries Protection Program NERSM Northern Everglades Regional Simulation Model
NGVD National Geodetic Vertical Datum NPDES National Pollutant Discharge Elimination System NSM Natural Systems Model
USNRCS U. S. Natural Res ources Conservation Service O&M operation and maintenance OPTI Reservoir Optimization Model P phosphorus PD&E Process Development and Engineering PIR Project Implementation Report ppb parts per billion ppm parts per million ppt parts per thousand
RECOVER Restoration Coordi nation and Verification RSM Regional Simulation Model RWCA recyclable water containment areas
RWPPB River Watershed Protection Plan Base RWQMP Research and Water Quality Monitoring Program SAV Submerged Aquatic Vegetation SFER South Florida Environmental Report
SFWMD South Florida Wate r Management District SFWMM South Florida Water Management Model
SLRWPP St. Lucie River Watershed Protection Plan
STA stormwater treatment area STORET Storage and Retrieval (5.3)List of Abbreviations

Caloosahatchee River Watershed Protection Plan January 2009
iv SWET Soil and Water Engineering Technology, Inc.
SWFFS Southwest Florid a Feasibility Study
SWFRPC Southwest Florida Regional Planning Council SWIM Surface Water Improvement and Management Plan TFI Target Flow Index TKN total Kjeldahl nitrogen TMDL Total Maximum Daily Load TN total nitrogen TOC total organic carbon TP total phosphorus TSS total suspended solids UF/IFAS University of Florida Institute of Food and Agriculture Sciences μg/L micrograms per liter
US United States USACE U.S. Army Corps of Engineers USDOI U.S. Department of Interior USDA U.S. Department of Agriculture USDA/NRCS U.S. Department of Agricultur e/Natural Resource Conservation Service USEPA U.S. Environmental Protection Agency
USFWS U.S. Fish and Wildlife Service USGS U.S. Geological Survey VEC Valued Ecosystem Component WaSh Watershed Hydrology and Water Quality Model WASP Water Quality Analysis Simulation Program WBID waterbody identification
WCA Water Conservation Area
WCAL West Caloosahatchee WMM Watershed Management Model WRAC Water Resources Advisory Committee WRDA Water Resources Development Act WRF Water Reclamation Facility WSE Water Supply and Environment

yr year

### CHAPTER 1

WATERSHED HISTORY AND PR EFERRED PLAN HIGHLIGHTSChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-i TABLE OF CONTENTS

1.0 WATERSHED HISTORY AND PREF ERRED PLAN HIGHLIGHTS......................... 1-1
1.1 Watershed History and Re storation Efforts .................................................................1-1
1.1.1 A Brief History ...................................................................................................... 1-1
1.1.2 Regional System Modifications – Lake Okeechobee Constraints.........................1-2
1.1.3 Ecological Consequences.......................................................................................1-2
1.1.4 Economic and Social Value...................................................................................1-3
1.1.5 Preferred Plan Builds Upon Ongoing Efforts ........................................................ 1-4
1.2 Preferred Plan Highlights............................................................................................. 1-7
1.2.1 Plan Components ...................................................................................................1-8
1.2.1.1 Watershed Construction Project .....................................................................1-8
1.2.1.2 Watershed Pollutant Control Program............................................................1-9
1.2.1.3 Watershed Research and Water Quality Monitoring Program.....................1-10
1.2.2 Phased Implementation........................................................................................1-11
1.2.3 Preliminary Cost Estimates..................................................................................1-12
1.2.4 Plan Refinements and Revisions..........................................................................1-13

LIST OF TABLES

1-1 Phase I (2009-2012) Projects and Implementation Status ............................................. 1-11Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-1 1.0 WATERSHED HISTORY AND PREFERRED PLAN HIGHLIGHTS

1.1 Watershed History and Restoration Efforts

Like most populated areas in the state, natural habitats, drainage patterns, and land uses within
the Caloosahatchee River Watershed have been si gnificantly altered over time. Loss of natural habitat from riverfront and coastal developmen t, increased urban development and stormwater runoff, construction of drainage canals, and agricultural activities have affected the quality, quantity, timing, and distribution of flows to the estuary. Wet s eason flows have increased due to increased and more rapid runoff from land clearing and impervious areas, and dry season
flows have decreased due to the lack of (natural) storage and increased water supply demand for agricultural and urban development. Loss of stor age within the watershed has resulted from the watershed being drained to acco mmodate grazing, citrus farms a nd other agricultural and urban development.

The Northern Everglades and Estuaries Protec tion Program (NEEPP) was developed in response to legislative findings that the Lake Okeechobee, Caloosahatchee River, and St. Lucie River
watersheds are critical water resources that have been, and continue to be, adversely affected from changes to hydrology and water quality.

1.1.1 A Brief History

Prior to the development of a canal system in the late 1800s, the Caloosahatchee River was a sinuous river originating in the natural marshlan ds west of Lake Okeechobee. In 1881, a canal (C-43) was dredged to connect the Caloosahatchee River to Lake Okeechobee. After the initial dredging, three lock-and-dam struct ures were added to control flow and stage height in the lake
and canal. S-77 at Moore Haven on Lake Okeechob ee and S-78 at Ortona were completed in the 1930s; S-79 (W.P. Franklin Lock and Dam) at Olga was completed in 1966. S-79 was constructed to assure a freshwater supply for Le e County and to prevent saltwater intrusion.

Construction of the massive control structures combined with the dredging that widened and deepened the river transformed the shallow and crooked Caloosahatchee Ri ver into a regulated waterway, part of the Intracoas tal and Okeechobee Waterway system under federal jurisdiction. The river is no longer free-flowing and is opera ted as two “pools” maintained at different elevations between the major water control st ructures. These actions provided a navigable connection between the west coast of Florida and Lake Okeechobee, and also made the Caloosahatchee Estuary one of the major outlets for water draining from the vast Upper
Kissimmee and Lake Okeechobee Basins.

These changes opened the area to agricultural and urban development, increasing the demand for dry land, better flood protection and consistent water supply. A lim ited network of local canals now provides flood control and water supply conveyance to accommodate citrus groves, sugar cane, cattle grazing, and rural/urban areas. Residents and businesses continue to rely on the river as a primary source for irrigation, drainage and potable water.

The Caloosahatchee Estuary, west of S-79, ha s also been significantly altered. Early descriptions of the estuary characterize it as bare ly navigable, with extensive shoals and oysterChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-2 bars restricting accessibility. In the 1960s, a navigation channel was dredged and a causeway built across the mouth of San Carlos Bay. Hist oric oyster bars upstream of Shell Point were
mined for use in the construction of roads.

1.1.2 Regional System Modifications – Lake Okeechobee Constraints

Over the last century, a number of factors have led to advers e changes in the hydrology and water quality of Lake Okeechobee, as well as to the Caloosahatchee and St. Lucie rivers and estuaries. These include changes in land use within the upstream Kissimmee River Basin; the construction of the regional water management network for flood cont rol [the Central and Southern Florida public works pr oject built by the U. S. Army Corps of Engineers (USACE)]; loss of available surface water storage; and the su bsequent flow of nutrient-enriched local runoff
into the water bodies.

While making way for growth, channelization of the Kissimmee River removed regional storage upstream of Lake Okeechobee. As nutrient-en riched runoff from ag ricultural and urban activities within the watershed flowed into the lake, its water quality suffered. Earlier, completion of the Herbert Hoover Dike in 1937 grea tly reduced the extent of the lake’s natural littoral or shoreline marsh areas, reducing ove rall lake surface area by a third and, thereby, significantly reducing the lake’s available and historical storage capacity. Construction of the protective levee system, along with drainage and development effo rts to the south, reduced the natural expanse of the Florida Everglades’ wetl and area by 50 percent, constraining flow south
from Lake Okeechobee.

Because the volume of water coming from the upst ream basin has remained relatively constant, approximately 3.5 million acre-feet per year, on av erage, equivalent to about 7.5 feet over the lake surface area, inflows have often exceeded Lake Okeechobee’s limite d present-day storage capacity. With discharge capacity to the southern pa rt of the Everglades ecosystem reduced
because of constructed alternat ions to the natural system, along with legal and environmental operating constraints, the need to discharge wate r from the lake to the east (via the St. Lucie River and Estuary) and west (via the Caloosah atchee River and Estuary) has increased. These coastal discharges of excess lake water – driven by the need to maintain safe lake levels in accordance with federal regulations and the USACE operating schedule for Lake Okeechobee –
can cause detrimental fluctuations for th e delicate estuarine environment.

1.1.3 Ecological Consequences

While the physical changes with in the 1,687 square mile Cal oosahatchee River Watershed created tremendous opportunities for population and economic grow th, they also resulted in major changes in the hydrology of the area. A dverse ecological impacts in the estuary have
occurred as a result of hydrological changes in the timi ng, distribution, quality, and volume of freshwater released into the estuary fr om the watershed and Lake Okeechobee.

Currently, two key conditions are negatively impacti ng the waterway’s overall health. First is the delivery of freshwater to the estuary. The Caloosahatchee Estuary often receives excessive freshwater discharges from its lo cal watersheds, especially during the wet season. This situation is sometimes exacerbated by regulatory discharg es from Lake Okeechobee. Conversely, thereChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-3 are often periods during the dry season when flow s from the Caloosahatchee River to the estuary stop completely. During drought periods when ir rigation demands are high, little or no water is released to the river. Due to the deprivation of freshwater, estuarine salinity levels rise, which impacts seagrasses and oysters.

The combination of an excess of freshwater durin g the wet season and a lack of discharge during the dry season lead to exaggerated seasonal and s hort-term fluctuations in salinity throughout the entire estuary. The fluctuations in salinity in any one region of the estuary can exceed the physiological tolerance limits of the organisms that normally live there, causing stress and/or mortality.

A second problem is excessive nut rient loading, which has resulted in eutrophication – typically indicated by blooms of algae, low dissolved oxyge n (DO) and periodic fish kills. Excess nutrient loading has been a concern since at least th e 1980s, when the state determined that the Caloosahatchee Estuary had reached its nutrient loading limits. Mo re recently, blue-green algae blooms, red tides, and massive accumulation of drif t algae have indicated that nutrient loads to the Caloosahatchee Estuary are too high.

Land use changes and drainage practices within the watershed have contributed to elevated
nutrient concentrations in the Caloosahatchee River Watershed. Nearly 35 percent of the drainage area is characterized as natural la nds (e.g., upland forests, wetlands, barren and open lands). Key developed land uses include impr oved pasture, citrus, sugarcane, and other agricultural operations; urban ar eas; and open water. Today, nutrient-ladened surface water runoff from subdivisions, farms, and cities, along with underground septic tanks and discharges from sewage treatment plants, carry high amounts of nitrogen (N) and phos phorus (P) into the river and estuary.

The result of nutrient loading combined with to o much or too little freshwater flowing to the Caloosahatchee River is a degraded estuarine ec ological community. Docu mented signs include
declines in the abundance and dive rsity of marine and estuarine species, degradation of water quality, increased phytoplankton and benthic algae, and a reduction in submerged habitat such as oyster and seagrass beds. A lack of suitable ha bitat causes stress for seagrass and oysters (two primary indicators of healthy estuarine communities in south Florida), as well as threatened and endangered species such as mana tees and wood storks. Urbaniza tion and shoreline development
have also resulted in an extensive loss of mangrove habitat along th e estuary. Mangrove
destruction results in a chain of reactions th at affect estuarine and offshore productivity.

1.1.4 Economic and Social Value

Despite a variety of human-induced impacts on the natural system, the Caloosahatchee River and Estuary continues to be an important environmen tal and economic resource for both the state and local communities. The Caloosahatchee Estuary is c onsidered part of the larger Charlotte Harbor National Estuary. A 1998 report estimated that tourism expenditures for the Charlotte Harbor area were more than $1.2 billion in 1996.

Restoration of a healthy, productiv e aquatic ecosystem is essentia l not only to maintaining the ecological integrity of a numbe r of publicly owned and managed areas (e.g., Matlacha PassChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-4 Aquatic Preserve, Pine Island Sound Aquatic Pr eserve, Charlotte Harbor National Estuary, and the Caloosahatchee, Matlacha Pass, Pine Island, and Ding Darling National Wildlife Refuges – along with numerous other federal, state, and local pa rks and recreation area s), but also to the associated economic benefits and overall quality of life in the watershed.

1.1.5 Preferred Plan Builds Upon Ongoing Efforts

Numerous ongoing or already planned projects in the Caloosahatchee River Watershed are aimed at improving water quality, quantity, timing and di stribution. A key benefit of the NEEPP is capturing all restoration-type projects under one umbrella. Major efforts which complement and support the preferred Plan goa ls and objectives include:

Comprehensive Everglades Restoration Plan (CERP) – Recognizing that construction of the federally-built water management system resulted in unintended consequences on the natural system, Congress authorized the Restudy of the Ce ntral and South Florida Project (Restudy) in the early 1990s to assess the measures necessary to restore the south Florida ecosystem. Upon completion of the Restudy, the CERP was propos ed in 1999 and approved as the framework for Everglades restoration in the Water Resources Development Act of 2000. The joint state-federal partnership of CERP aims to re store, protect, and preserve th e water resources of central and southern Florida, including the Everglades.

To date, the state has invested more than $1.5 billion to acquire 58 percent of the land needed to implement the state-federal CERP initiative.

The CERP projects that have the greatest benefit for the Ca loosahatchee Estuary are the Caloosahatchee River (C-43) West Basin Stor age Reservoir Project, the Southwest Florida Feasibility Study, the Lake Okeechobee Watershed Project, and Aquifer Storage and Recovery (ASR) Projects.

• Caloosahatchee River (C-43) West Basin St orage Reservoir Proj ect – Currently, the South Florida regional system stores water in Lake Okeechobee. Based on a variety of complex flood control and ecologic factors, ex cess water is sometimes discharged from the lake via the C-43 canal. The resulting surges of freshwater down the river reduce estuarine salinity levels. Alternately, duri ng drought periods when irrigation demands are high, little or no water is releas ed to the river, allowing estuar ine salinity levels to rise. This project will help ensure a more natural, co nsistent flow of freshwater to the estuary. Excess basin stormwater runoff, along with regulatory releases from Lake Okeechobee, will be captured and stored in a reservoi r (170,000 acre-feet capacity) and released slowly, as needed, to restore and maintain the estuary. All needed land has been acquired; pre-construction test cells have been completed and monitored; and project design is complete.

• Southwest Florida Feasibility Study – The study is a compre hensive review of the water issues that face southwest Florida, and is not limited to those related to the regional flood control project. The goal of th e feasibility study is to deve lop a water resources plan for the entire southwest Florida area and pr ovide for ecosystem and marine/estuaryChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-5 restoration and protection, water quality, fl ood protection, water supply, and other waterrelated purposes.

• Lake Okeechobee Watershed Project – This pr oject includes six st ructural components and a modification to the existing Lake Ist okpoga Regulation Schedule. The construction components include the Taylor Creek/N ubbin Slough Reservoir and Stormwater Treatment Area (STA), Kissimmee Reservoi r, Istokpoga Reservoir, Istokpoga STA and Paradise Run Wetland Restoration. This pr oject will improve quality and quantity of discharges into Lake Okeechobee, wh ich will also benefit the downstream
Caloosahatchee River Watershed.

• Aquifer Storage and Recovery – ASR involves the concept of stori ng partially treated surface water underground, by pumping the water through wells that are used for both recharge (injection) and recove r. ASR technology has been demonstrated to be feasible,
but has not been tested on the scale that is required for CERP. A pilot project was
initiated in the Caloosahatchee River Basin in 2003, just west of LaBelle. The results of the exploratory well indicated that while high capacity ASR technology would not be feasible at that location, other sites within the watershed may be evaluated for a potential pilot project.

C-43 Water Quality Treatment and Testing Facility – One of the first projects identified under NEEPP, this is a joint, 1,350-acre project w ith Lee County. The purpose of this project is to design and build a testing f acility that will study N removal methods and to provide results which can be used to improve the methods of water quality treatment in the Caloosahatchee
Basin. The land has been ac quired and design is under way.

Lake Okeechobee Protection Act – In 2000, the Florida legislature passed the Lake Okeechobee Protection Act establishing a phased, wa tershed-based protecti on program to restore the lake and its tributaries. As required by the Lake Okeechob ee Protection Act, SOUTH Florida Water Management District (SFWMD), Florid a Department of Agriculture and Consumer Services (FDACS), and Florida Department of Environmental Protection (FDEP) developed the Lake Okeechobee Watershed Protection Plan, detaili ng a suite of activities for reducing pollutant loads, particularly P, in the watershed.

Since the implementation of the Lake Okeechob ee Watershed Protection Plan, the coordinating agencies have reached so me notable milestones:

• Adopting a Lake Okeechobee TMDL for P of 140 me tric tons to achieve an in-lake target P concentration of 40 parts per billion;

• Constructing the Taylor Creek and Nubbi n Slough Stormwater Treatment Areas in partnership with the federal government;

• Completing conservation and nutrient management plans for 278,000 acres of agricultural land in the watershed;

• Investing $7.5 million in individual projects to reduce P from dairy farms, restore isolated wetlands, treat urban stormwater and enhance water storage and habitat on ranchlands;Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-6 • Implementing a comprehensive research and water quality monito ring program for the lake and watershed;

• Treating more than 32,000 acres of exotic and invasive vegetation since 2000.

Lake Okeechobee and Estuary Recovery (LOER) – To help further accelerate progress, the $200 million LOER plan was launched in 2005 – a co mbination of capital projects and numerous interagency initiatives to increase water storag e, expand and construct treatment marshes and expedite environmental management initiatives. In addition to expediting construction of a series of Lake Okeechobee Fast-Track projects, other components of the LOER plan included alternative water storage, revisions to permit criteria, changes in fertilizer practices, revisions to the Lake Okeechobee regulation schedule and continued implementation of the Lake Okeechobee Protection Plan components.

Lake Okeechobee Regulation Schedule – A study was initiated in late 2005 by the USACE to develop a new water regulation schedule allowing operational changes within the existing infrastructure to address ecologi cal and Herbert Hoover Dike safe ty issues. Ba sed solely on current water storage capacity in the system, the operational changes will allow for quicker response and operational flexibility to fluctuating lake conditions and tributary inflows. It also allows for the capability to initiate releases to the Caloosahatchee and St. Lucie River estuaries and the Water Conservation Areas to the south, at lower levels than under the previous schedule.
The low-volume releases should add flows to the Caloosahatchee Estuary, helping maintain appropriate salinity ranges. A follow-up study will take into account construction of early CERP projects, including projects expedited by the SF WMD, along with dike rehabilitation efforts, which will provide many additional options for water storage and management.

Regulatory and Source Control Programs/Planning – Examples of existing and proposed source control programs include widespread de velopment and implementation of agricultural Best Management Practices (BMPs), restrictions on the application of wastewater residuals, implementation of the Florida Yards and Neighborhoods Program (minimizes the use of pesticides, fertilizers, and irrigation water) and Florida’s consolidated stormwater management programs. As part of the pref erred Plan, some regulatory rule s will be revised/expanded to ensure compatibility with current initiatives.

For example, the existing Lake Okeechobee Wate rshed Regulatory Nutrie nt Source Control Program was adopted in 1989 to sp ecifically address P. The Nort hern Everglades and Estuary Protection legislation expanded the program boundary to the Caloosahatchee River and St. Lucie
River watersheds and added N to the focus of nutrient source controls. Rule development to extend the program to the Caloosahatchee Basin is expected to begin in 2009.

Stormwater Master Programs/Charlotte County – Charlotte County received a federal National Pollution Discharge Elimination Syst em (NPDES) Phase II municipal permit in 2003. The permit allows the creation of a county-wide Stormwater Mana gement Plan with a five-year implementation schedule. Every five years, the county must renew the permit and prove that the plan is being implemented. An annual reporti ng program provides proof of their continuing effort to protect water quality and meet federal standards.Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-7 Stormwater Master Programs/Lee County – Lee County received an NPDES municipal permit in 2004 containing 14 required program elem ents. A number of the elements identified controls for specific pollutants such as pesticides , herbicides, fertilizers, sanitary seepage, and
construction site runoff. Other elements addr essed public education, system operation and maintenance, and inspection program implemen tation. An annual reporting program provides proof of their continuing effort to protect wa ter quality and meet federal standards.

Southwest Florida Regional Planning Council – A Lower West Coast Watersheds
Subcommittee was formed in 2006 to address the condition of the Caloosahatchee River and Estuary. Through the work of this Subcommittee, four resolutions have been passed that should positively impact water quality in the watershed. The resolutions address fertilizer, wastewater, wastewater package plants, and onsite wastewater systems planning, treatment, and management.

Research and Monitoring – Research and monitoring in th e Caloosahatchee River Watershed have been on-going for a number of years. In the late 1970s, the SFWMD began obtaining biological and physical information to determine the effects of lo w salinity on fishes and benthic organisms. The SFWMD initiated a continuous, long-term salinity monitoring program in the
Caloosahatchee River in 1992.

Significant data gaps and uncertainties in the understanding of the estuarine system and its watershed still exist. An important com ponent of the Caloosahatchee River Watershed Protection Plan (CRWPP) is the continuation of research and m onitoring to reduce uncertainty and to close information gaps, and to support imp rovements to the estuary through the adaptive management process. This will ultimately lead to robust, scientifically-b ased solutions and more accurately predict the res ponse of the estuarine systems to changes in water quality and quantity.

1.2 Preferred Plan Highlights

The steadfast commitment and su pport of all levels of govern ment working together with environmental groups and local communities has been instrumental in sustaining support for the long-term restoration of the Caloosahatchee River Watershed. That continued support is just as
vital for future efforts. A concerted effort was made during the CRWPP planning process to involve all appropriate and relevant agencies, as well as the public and stakeholders. A multidisciplinary, multi-agency working team met periodically to collaborate, discuss and develop the technical components of the plan. Those meetings were open to the public, along with numerous other venues for public input.

The draft CRWPP was released for public co mment on October 1, 2008, with an open public comment period through October 31, 2008. Input received during this pr ocess was considered during the finalization of the pref erred Plan and formal responses for each comment are provided in the full plan document.Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-8 1.2.1 Plan Components

1.2.1.1 Watershed Construction Project

Identifies water quality and st orage projects (known as mana gement measures) to improve hydrology, water quality, and aquatic habitats within the waters hed. Various management measures, submitted by working team members, were used to formulate alternatives, which were then evaluated for water storage benef its and nutrient loading reductions.

Water quantity was evaluated by a water budget analysis using the Northern Everglades Regional Simulation Model, based upon a simula tion period of 1970-2005. The water storage capacity of each management measure was estimat ed based upon the best available information. Water quality was evaluated using a spreadsheet model based on water quality data from 1995- 2005. P and N reductions for each management measure were estimated and were utilized in the spreadsheet to calculate remaining loads to the Caloosahatchee Estuary upon implementation of
the alternatives.

Four alternatives were formulated and evaluated by the working team:

Alternative 1 – Current, ongoi ng and planned projects
Alternative 2 – Maximize wa ter storage capacity
Alternative 3 – Maximize P and N nutrient load reductions Alternative 4 – Optimize both water storage cap acity and P and N nutrient load reductions

Based on the results of the water quantity and quality analysis, Alternative 4 was identified as the plan that best met the legislative goals. The key findings include:

Water Quantity/Storage – The total storage identified in the preferred Plan is approximately 400,000 acre-feet. The Caloosahatch ee River (C-43) West Basin Storage Reservoir accounts for nearly half of that amount, w ith the remainder to be made up through additional storage in freshwater basins (215,000 acre-ft). The preferre d Plan watershed storage is in addition to the approximately 900,000 acre-feet of storage iden tified in the Lake Okeechobee Watershed Construction Project, Phase II Technical Plan (LOP 2TP) to better manage lake levels and to help
reduce the need for releases to the estuaries.

An objective of the CRWPP is to reduce the fr equency and duration of harmful freshwater
releases into the Caloosahatch ee Estuary. Based on computer modeling, the preferred Plan:

• Reduces the occurrences of undesirable fl ows between 2,800 and 4,500 cubic feet per second (cfs) by more than 50 pe rcent over current conditions;

• Reduces the occurrences of undesirable flow s greater than 4,500 cfs by 60 percent over current conditions;

• Significantly reduces occurrences of flows le ss than 450 cfs, resulting in a 98 percent improvement over current conditions;

• Results in an 84 percent improvement over current conditions towards achieving ideal
flow distribution.Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-9 Overall, the preferred Plan reduc es the percentage of months w ith detrimental high or low flows to 11 percent. Under current conditions, the Caloosahatchee Estuary experiences detrimental flow events 62 percent of the time.

Water Quality – The current load from the Caloosahatchee River Watershed to the Caloosahatchee Estuary is 2,900 metric tons per year (mt/yr) of total nitrogen (TN) and 326 mt/yr of total phosphorus (TP). The preferred Pl an achieves a total load reduction of 38 percent for TN and 39 percent for TP. These results reflect the cumulative benefits provided by implementation of the LOP2TP and the CRWPP.

During the plan development process, analyses were conducted to es timate nutrient load reductions by sub-watershed. “Hot spots” contribu ting high nutrient loads were identified within the watershed and management measures were developed to address these areas. The major focus of management measures implemented for nutrient reductions in the Caloosahatchee River Watershed is N treatment, especially in the West Caloosahatchee Sub-watershed – a major contributor of high N levels.

1.2.1.2 Watershed Pollutant Control Program

The Caloosahatchee River Watershed Pollutant Control Program is designed to be a multifaceted approach to preventing or reducing pollu tion at its source through the implementation of existing state regulations a nd BMPs, along with the development and implementation of improved BMPs focusing on P and N. Key agency responsibilities and programs include:

• FDACS develops, adopts, and implements agricultural BMPs to reduce water quality impacts from agricultural discharges and e nhance water conservation. The statewide Urban Turf Fertilizer Rule, adopted in A ugust 2007, limits the P and N content in fertilizers for urban turf and lawns, reduc ing the amount of P and N reaching Florida’s water resources. The proposed Animal Manure Application Rule, initiated in February 2008, addresses the land appli cation of animal wastes in the Caloosahatchee River Watershed, including minimum application setbacks from wetlands and all surface

waters.

• FDEP oversees initiatives to improve existing stormwater and wastewater infrastructure; implement pollutant reduction plans for muni cipal stormwater management systems; promote improved stormwater treatment th rough land development regulations; enhance existing regulations for the management of domestic wastewater residuals within the watershed; and administer the NPDES permit program.

• SFWMD regulatory programs include the Environmental Resource Permit (ERP) program and the proposed Caloosahatchee Ri ver Watershed Regulator y Nutrient Source Control Program. In March 2008, the Distri ct initiated rule development for an ERP basin rule with specific suppl emental criteria designed to re sult in no increase in total runoff volume from new development that discharges ultimately to Lake Okeechobee
and/or the Caloosahatchee or St. Lucie Estuaries. Adopt ed in 1989, the 40E-61 programChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-10 requires source control measures for P. As a result of the NEEPP legislation, the program will be expanded to include the Cal oosahatchee River Watershed and to include
N source control.

1.2.1.3 Watershed Research and Water Quality Monitoring Program

The objective of the Research and Water Quality M onitoring Program is to increase the ability to identify robust, scientifically based solutions to the water quality and water quantity issues in the Caloosahatchee River and Estuary and allow fo r more accurate predic tions for responding to ecological changes. It builds upon existing monitoring, research, and modeling efforts and
makes recommended modifications to better achie ve and assess the goals and targets of the
CRWPP.

Monitoring - Existing monitoring in the Caloosahatchee River Watershed includes water quality and flow monitoring. Monitoring efforts are also being undertak en within the Caloosahatchee Estuary including salinity and aquatic habitat monitoring (e.g., oysters and seagrasses).

The preferred Plan recommends that the existing flow, salinity, water qual ity, and aquatic habitat monitoring programs continue, along with se veral water quality and flow optimization enhancements, including: 1) East of S-79 – An additional eight long-ter m sites along the reach of the Caloosahatchee River to provide improved sp atial coverage and four new short-term sites in canal tributaries flowing into the Caloosahatchee River to help determine if loads calculated from reach samples accurately reflect the sum of tributary loads; 2) West of S-79 – To address important sampling gaps, reinstate four historic water quality sites, and to eliminate redundancies, remove six sites from the networ k; and 3) Additional water quality parameter measurements (five-day biochemical oxygen demand and dissolved total Kjeldahl nitrogen) are
also recommended at both freshwater and estuarine monitoring sites.

Research – Research projects are intended to reduce or eliminate key uncertainties related to TMDLs and flow and salinity envelopes, and optim ize operational protocols. The preferred Plan recommends five applied research projects:

Estuarine Nutrient Budget - This project will construct nutr ient budgets of N and P for the Caloosahatchee Estuary and increase the capab ility to predict the effects of various management measures.

Dissolved Oxygen Dynamics - This project will identify the factors causing DO impairment in the Caloosahatchee Estuary. Understandin g DO dynamics will also help to identify impacts from pollutant loads to estuarine ecosystems.

Low Salinity Zone - This project examines the effects of freshwater discharges on the production of fish larvae in the estuary and uti lization of the low salin ity zones as a nursery

area.Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-11 Light Attenuation in San Carlos Bay - This study will examine how relative contributions to total light attenuation of chlorophyll-a, co lored dissolved organic matter, and turbidity vary with season and freshwater inflow in San Carlos Bay.

Modeling – An integrated modeling framework is proposed to meet water management objectives for coastal ecosystems protection and restoration.

1.2.2 Phased Implementation

The preferred Plan will be implemented in multiple phases. Phase I includes projects that are currently initiated, or that will be initiated or completed by 2012. Phase II includes projects that
will be initiated between 2013 and 2018. The Long Term Implementation Phase includes projects that will be initiated beyond 2018.

Table 1-1. Phase I (2009-2012) Projects and Implementation Status

Initiated Completed

Powell Creek Algal Turf Scrubber 9

Alternative Water Storage Facilities- Barron Water
Control District 9

Caloosahatchee Area Lakes Restoration (Lake Hicpochee) 9

C-43 Water Quality Treatment Demonstration Project (BOMA) 9

Spanish Creek/Four Corners Environmental
Restoration Phase I 9

C-43 West Reservoir 9

Local Stormwater Projects (e.g., treatment wetlands, conveyance and structural improvements, and stormwater recovery projects) 9 9

Florida Ranchlands and Environmental Services Projects 9 Construction Project

Farm and Ranchland Partnership 9

Agricultural and Urban BMPs 9
Proposed Revisions to Regulatory Programs (40E61 Source Control Regulatory Program, ERP Basin Rule, Statewide Stormwater Rule) 9 Pollutant
Control Program
Comprehensive Planning and Growth Management 9

Research
and Water Quality Monitoring Monitoring, Research, and Modeling 9 9Chapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-12 1.2.3 Preliminary Cost Estimates

The preferred Plan captures a wide array of restoration projects and programs, utilizing a variety of implementation and funding strategies to move projects forward. Many are already included in other planning or restoration efforts.

The coordinating agencies will seek to maximize opportunities for federal and local government cost-sharing programs and opportunities for part nerships with the priv ate sector and local government. In addition, to provide a source of state funding for the conti nued restoration of the South Florida ecosystem, the 2007 Florida legi slature expanded the us e of the Save Our Everglades Trust Fund to include Northern Ever glades restoration and extended the State of Florida’s commitment to Everglades restoration through the year 2020.

Costs estimates, potential funding sources, and cost assumptions are provided below for each Plan component included in Phas e I (with the exception of the urban BMP costs where the costs reflect full implementation with no phasing). Costs for each progressive phase of implementation will be developed as more detaile d project designs and in formation from various projects and studies become available.

Phase I implementation cost estimates:

• Watershed Construction Project Regional Projects CERP: For CERP projects included in Phase I, capital costs are estimated to be $524- $781 million. State CERP costs are eligible fo r a 50 percent cost-share with the federal government and may also include a local cost share.

Non-CERP: For non-CERP projects (e.g., C-43 Water Quality Treatment and Testing Facility), capital costs are estimated to be $117-$175 million from state, SFWMD and/or
local funds.

Local Projects $15 million from state funds. Note : Based on $5 million per year from 2010 to 2012 and does not reflect matching funds fr om SFWMD or local sources.

• Watershed Pollutant Control Program Agricultural BMPs: $3.3-$4.0 million from st ate, SFWMD and/or local funds. Note : Assumes that 100 percent of owner-imple mented and 35 percent of cost-share agricultural BMPs within the watershed can be implemented during Phase I, the state contributes 50% for capital co sts, and that remaining cost s are paid by landowners and federal grants.

Urban BMPs (total – no phasi ng): $663-$809 million of total capit al costs paid from state
and local funds. Note : Reflects total capital costs for full implementation of urban BMPs with no phasing and no cost share assumpti ons. Additional details regarding funding scenarios and schedules for urban BMP implementation will be established during theChapter 1

Caloosahatchee River Watershed Protection Plan January 2009
1-13 Basin Management Action Plan development pro cess and will be incorporated into future protection plan updates.

• Watershed Research and Water Quality Monitoring Program $5.2 million in state and local funds. Note : This estimate includes costs for research and additional monitoring. Ongoing monitoring cost s are not included, as those programs are already in existence and funded through other mechanisms.

1.2.4 Plan Refinements and Revisions

The preferred Plan provides a framework and road map for progressive wa ter quality and water quantity improvements to benefit the watershed a nd estuary. Throughout implementation, it is fully expected that hydrologic and water quality conditions in the watershed will continue to change as land uses in the watershed are m odified, and as restoration projects become operational. Performance will be periodically assessed and revisions made as necessary. In addition, the legislation requires a nnual reports and prot ection plan updates every three years.

### CHAPTER 2

INTRODUCTIONChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-i TABLE OF CONTENTS

2.0 INTRODUCTION ........................................................................................................... 2-1
2.1 Northern Everglades and Estuaries Protection Program.............................................. 2-2
2.1.1 Lake Okeechobee Watershed Protection Program ................................................2-2
2.1.1.1 Lake Okeechobee Watershed Protection Plan Phase I ...................................2-2
2.1.1.2 Lake Okeechobee Watershed Construction Pr oject, Phase II Technical Plan2-2
2.1.2 Caloosahatchee River Waters hed Protection Plan................................................. 2-3
2.1.2.1 Construction Project ....................................................................................... 2-4
2.1.2.2 Pollutant Control Program..............................................................................2-4
2.1.2.3 Research and Water Quality Monitoring Program.........................................2-4
2.1.3 St. Lucie River Watershed Protection Plan............................................................2-4
2.2 Purpose and Scope ....................................................................................................... 2-4
2.3 Background.................................................................................................................. 2-5
2.3.1 Historical Conditions .............................................................................................2-5
2.3.2 Current Conditions.................................................................................................2-7
2.3.3 Economic and Social Value...................................................................................2-7
2.4 Study Area ................................................................................................................... 2- 8
2.4.1 Caloosahatchee Estuary ......................................................................................... 2-8
2.4.2 Caloosahatchee River Watershed ..........................................................................2-9
2.4.3 S-4 Sub-watershed ................................................................................................. 2-9
2.4.4 East Caloosahatchee Sub-watershed....................................................................2-10
2.4.4.1 Freshwater Northeast and Southeast Basins.................................................2-10
2.4.5 West Caloosahatchee Sub-watershed .................................................................. 2-11
2.4.5.1 Freshwater Northwest and Southwest Basins...............................................2-11
2.4.6 Tidal Caloosahatchee Sub-watershed ..................................................................2-11
2.4.6.1 Tidal North and South Basins.......................................................................2-11
2.4.6.2 Caloosahatchee Estuary Basin......................................................................2-12
2.4.7 Coastal Sub-watershed.........................................................................................2-12
2.4.7.1 North Coastal Basin......................................................................................2-12
2.4.7.2 Nearshore Basin............................................................................................2-12

LIST OF FIGURES

2-1 Northern Everglades and Estuaries Pr otection Program Legislative Mandates .............. 2-3
2-2 Historical vs. Current Everglades Flows ......................................................................... 2-6
2-3 Caloosahatchee River Watershed an d Sub-watershed Boundary Map............................ 2-8 2-4 Caloosahatchee River Watershed Land Use Map.......................................................... 2-10Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-1 2.0 INTRODUCTION

The Caloosahatchee River Watershed Protection Plan (CRWPP) has been developed in response to recent state legislation, which authorized the Northern Evergl ades and Estuaries Protection Program (NEEPP), Section 373.4595, Florida Statutes (F.S.). Passed by the Florida Legislature and signed into law by Governor Charlie Crist in 2007, the landmark Northern Everglades and Estuaries Protection Program promotes a comprehe nsive, interconnected wa tershed approach to protecting Lake Okeechobee, and the Caloosahatchee and St. Lucie Rivers and Estuaries. The primary goal is to rest ore and protect surface water resour ces by addressing not only the water quality but also the quantity, timing, and dist ribution of water to the natural system.

The legislation requires development of watershe d protection plans for the Caloosahatchee and St. Lucie by January 1, 2009. The coordinating agencies, which in clude the South Florida Water Management District (SFWMD), Florida Depart ment of Environmental Protection (FDEP), and the Florida Department of Agriculture and C onsumer Services (FDACS), developed the CRWPP
and St. Lucie River Watershed Protection Plan (SLRWPP), in cooperat ion with Martin, St. Lucie, and Lee counties and affected muni cipalities, throughout late 2007 and 2008.

The three main components of the plans are: (1) a Watershed Constr uction Project, which identifies water quality and st orage projects to improve hydr ology, water quality, and aquatic habitats within the watershed; (2) a Watershed Pollutant Control Program that is a multi-faceted approach to reducing pollutant loads by improving the management of pollutant sources within the watershed; and (3) a Watershed Research an d Water Quality Monitori ng Program to monitor progress of the programs and the health of the estu aries. The Construction Project is provided in Chapter 6 of this document, the Caloosahatchee River Watershed Pollutant Control Program is included as Chapter 7 of this document, and th e Caloosahatchee River Watershed Research and Water Quality Monitoring Program (CRWQMP) is attached as Appendix E and summarized in Chapter 8 of this document. A summary of a ll three components, whic h collectivel y represent the Preferred Plan of the CRWPP, is found in Chapter 9.

IMPORTANT NOTE: While acknowledging the imp acts of freshwater releases from Lake Okeechobee on the downstream environment, it is important to note that the intent of the protection plan is to identify strategies for addressing and better unders tanding local watershed influences and inflows on the health of the river and estuary. A separate document, the Lake
Okeechobee Watershed Construction Project, Phase II Technical Plan (LOP2TP), focuses on projects and initiatives designe d to reduce total phosphorus (TP) loadings to the Lake and to provide additional storage capacity north of the Lake in order to better manage lake levels and help reduce the need for releases to the estuaries. That plan, also a requirement of the Northern Everglades and Estuaries Protection Program, was submitted to the Florida Legislature on February 1, 2008.Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-2 2.1 Northern Everglades and Estuaries Protection Program

The Northern Everglades and Estuaries Prot ection Program recognizes the importance and connectivity of the entire Everglades ecosystem . Implementation of this program will include improving the quality, quantity, timing, and dist ribution of water to the natural system.

The legislative mandate for the NEEPP (Sec tion 373.4595, F.S.) establishes three watershed protection programs: (1) the Lake Okeechob ee Watershed Protection Program; (2) the Caloosahatchee River Watershed Protection Progr am; and (3) the St. Lucie River Watershed Protection Program ( Figure 2-1 ). Under each of these watershed protection programs, a specific watershed protection plan is re quired. Details of these plans are discussed in the following
subsections.

2.1.1 Lake Okeechobee Watershed Protection Program

In 2000, the legislature passed the Lake Ok eechobee Protection Act LOPA, Section 373.4595, F.S. (2000), which established a restoration and pr otection program for the Lake. The intent of the original legislation was to achieve and maintain compliance with state water quality
standards in Lake Okeechobee and its tributar y waters. This was to be done through a watershed-based, phased, comprehensive and in novative protection program designed to reduce P loads and implement long-term solutions, based upon the Lake’s TMDL for P. The Lake Okeechobee Watershed Protection Program include s two phases: Phase I was developed under the original LOPA and Phase II was developed under the NEEPP.

2.1.1.1 Lake Okeechobee Watershed Protection Plan Phase I

Phase I was intended to bring some immediate total phosphorus (TP) load reduction to Lake Okeechobee. The project features are designed to improve hydrol ogy and water quality of Lake Okeechobee and downstream receiving waters, consis tent with recommendations included in the South Florida Ecosystem Working Group’s Lake Okeechobee Action Plan. Section 528(b)(3) of the Water Resources Development Act (WRDA) of 1996 authorized the identif ication of critical restoration projects for the Sout h Florida ecosystem. Phase I in cluded a critical restoration project, which was identified as the Lake Okeechobee Water Retention Phosphorus Removal Critical Project. Phase I was delivered to the le gislature in 2004 and an update was submitted in February 2007.

2.1.1.2 Lake Okeechobee Watershed Constructi on Project, Phase II Technical Plan

Phase II identifies construction projects, along with on-site measures, needed to achieve water quality targets for Lake Okeechobee. These efforts, such as agricultural and urban best management practices (BMPs), are to prevent or reduce pollution at its source. In addition, Phase II includes projects for increasing water storage north of Lake Okeechobee to achieve
healthier lake levels and reduce harmful discha rges to the Caloosahatchee and St. Lucie River estuaries. Phase II was submitted to the legislature in February 2008.Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-3 Figure 2-1. Northern Everglades and Estuaries Protection Program Legislative Mandates

2.1.2 Caloosahatchee River Watershed Protection Plan

The CRWPP is required by the NEEPP. This document will be updated every three years. As such, the recommendations included in this plan ar e based on best availabl e information to date and are subject to modification as additional data and underst anding of the dynamics of the watershed and Lake Okeechobee are developed. This will allow maximum flexibility to embrace new technologies, processes and procedures.

This CRWPP identifies the geographic extent of the watershed and is being coordinated, as needed, with the Lake Okeechobee Watershed Pr otection Plan and SLRWPP. It provides an implementation schedule for pollutant load reduc tions consistent with any adopted nutrient TMDLs. However, the TMDL for the Caloos ahatchee River and Es tuary is still under development by FDEP. In order to move forward with the plan, alternatives were formulated to “maximize” reduction of TP and total nitrogen (TN), based on provisional nutrient concentration reduction goals for the system. The CWRPP include s three main components: (1) a Construction Project, (2) a Pollutant Control Program, and (3) a Research and Water Quality Monitoring Program. FDAC Mandatory
BMPs LOFT

Lake O Reg.
Schedule Mod CRW
Construction Project CRW
Research and Water Quality

Monitoring

Program CRW Pollution
Control
Pro g ram Lake Okeechobee & Estuary Recovery Program (LOER) Lake Okeechobee
Watershed Protection Plan

Phase II Technical Plan Lake Okeechobee Watershed Protection Program River Watershed Protection Program

Caloosahatchee River Watershed (CRW) Protection
Plan St. Lucie River Watershed (SLRW)

Protection Plan

SLRW RWQM Program SLRW
Pollution
Control Program SLRW
Construction

Project TMDLs Northern Everglades & Estuaries Protection Program (§373.4595)Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-4 2.1.2.1 Construction Project

The purpose of the CRWPP Construction Project is to (1) identify potential water quality and quantity projects within the Caloosahatchee River Watershed, (2) formulate alternatives based on the projects identified, and (3) iden tify a preferred alternative that results in the most benefit to the Caloosahatchee Estuary. The CRWPP also iden tifies available funding sources to implement the projects. To ensure timely implementation, the coordinating agencies will coordinate design, scheduling, and sequencing of project facilities with Le e County, Hendry County, Glades County, Charlotte County, and other interested stakeholders and a ffected local governments. The Construction Project is discussed in mo re detail in Chapter 6 of this document.

2.1.2.2 Pollutant Control Program

The Caloosahatchee River Watershed Pollutant Control Program is designed to be a multifaceted approach to reducing pollutant loads by improving the management of pollutant sources
within the Caloosahatchee River Watershed. Su ch improvements will be made through (1) the implementation of regulations; (2) the develo pment and implementation of BMPs; (3) the improvement and restoration of hydrologic function of natural and managed systems; and (4) the
utilization of alternative technol ogies for pollutant reduction, such as cost-effective biologically based, hybrid wetland/chemical and other innova tive nutrient control technologies. The coordinating agencies will facil itate the utilization of federal programs that offer opportunities for water quality treatment, including preserva tion, restoration, or cr eation of wetlands on agricultural lands. The Pollutant Control Program is discussed in more detail in Chapter 7 of this
document.

2.1.2.3 Research and Water Quality Monitoring Program

The Research and Water Quality Monitori ng Program (RWQMP) will build upon SFWMD’s existing research program and is intended to carry out, comply with, or assess the plans, programs, and other responsibilities created by this program. The program will also conduct an assessment of existing monitoring programs for hydr ology, water quality, and aquatic habitat, as well as evaluations of their ability to meet program goals and the identification of potential improvements. The RWQMP is discussed in more detail in Chapter 8 of this document.

2.1.3 St. Lucie River Watershed Protection Plan

The SLRWPP is being developed concurrently w ith the CRWPP, and will also be submitted to the Florida Legislature no late r than January 1, 2009. The SL RWPP comprises the same three components as the CRWPP: (1) a Construction Proj ect, (2) a Pollutant Control Program, and (3) a Research and Water Quality Monitoring Program.

2.2 Purpose and Scope

The purpose of the CRWPP is to provide an overall strategy for improving quality, quantity, timing, and distribution of water in the Caloos ahatchee Estuary and to re-establish salinity regimes suitable for the maintenance of a healthy, naturally diverse, and well-balanced estuarine ecosystem. The CRWPP is intended to ach ieve the following four objectives:Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-5 • Minimize the frequency and duration of harmfu l excess freshwater discharges from the Caloosahatchee River Watershed;

• Maintain minimum flows to the Caloosah atchee Estuary to prevent undesirable high salinity conditions;

• Maximize nitrogen (N) and P load reductions to meet TMDLs as they are established for the Caloosahatchee Estuary; and

• Establish a Research and Water Quality Moni toring Program sufficient to implement the program and projects.

2.3 Background

The Caloosahatchee Estuary is located in Lee County and encompasses approximately 140 square miles (mi 2 ) of estuarine habitat on Florida’s southwest coast in the vicinity of Fort Myers. The estuary consists of the tidal portion of the Caloosahatchee River, which extends from the W.P. Franklin Lock and Dam (Structure S-79) downstream to its mouth at Shell Point, and its associated coastal waters, which include Matlacha Pass, San Carlos Bay, and Pine Island Sound. The estuary is connected to Lake Okeechobee by the Caloosahatchee River (C-43), a man-made connection to the Lake originally created in the late 19 th century. The Caloosahatchee River now
serves as the western reach of the cross- state Okeechobee Waterway that connects Lake
Okeechobee to the Gulf of Mexico at Fort Myers on the west coast.

2.3.1 Historical Conditions

Historical drainage patterns w ithin the Caloosahatchee River Watershed have been highly altered since pre-drainage times. Figure 2-2 shows the extent of altered flows and wetland loss in the Everglades system, including the Caloosahat chee River Watershed. Continued population growth increased the demands for more land, better flood protection, and consistent water supply. Flood control measures were taken to protect reside nts by constructing the Herbert Hoover Dike around Lake Okeechobee, and include d ditching and draining to create residential land, cities, and agricultural fields.

Prior to the development of a canal system in the late 1800s, the Caloosahatchee was a sinuous river originating in the marshla nds of Lake Flirt, west of Lake Okeechobee. Two small lakes, Lettuce and Bonnet, stood between the headwaters of the river and Lake Okeechobee, and were only connected by marshy grassland. In 1881, a canal (C-43) was dredged to connect the
Caloosahatchee River to Lake Okeechobee. Dredging opened the area for agriculture, navigation, and development. At the same time, these activities had environmental consequences including lowering Lake Okeechobee’ s water table and the lo ss of 76 river bends and 8.2 miles of river length (Kimes & Crocker, 1998).

After the initial dredging, three lock-and-dam stru ctures were added to control flow and stage height in the lake and canal. S-77 at M oore Haven on Lake Okeechobee and S-78 at Ortona were completed in the 1930s; while the last, S-79 at Olga (W.P. Franklin Lock and Dam), was completed in 1966. S-79 was constructed to assu re a freshwater supply for Lee County and to prevent saltwater intrusion. The last major improvements, from th e massive control structures to the dredging that widened and deepened the rive r, finished the 80-year process of transforming
the shallow and crooked Caloosahatchee River into a regulated navigational waterway, part ofChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-6 the Intracoastal and Okeechobee Waterway system under federal jurisdicti on (Kimes & Crocker, 1998).

Figure 2-2 . Historical vs. Curre nt Everglades Flows

The Caloosahatchee Estuary west of S-79 has al so been significantly altered (Chamberlain & Doering, 1998a). Early descriptions of the estuary charac terize it as only navigable in a small
craft for a few miles before the channel would di sappear into marshland. Additionally, extensive shoals and oyster bars restricted accessibility to the estuary. Howeve r, once the navigational significance of the waterway was recognized, work began to open it to larger vessels. In the 1960s, a navigation channel had been dredged a nd a causeway built acro ss the mouth of San Carlos Bay. Historic oyster ba rs upstream of Shell Point were mined and removed for use in the construction of roads, which include seven autom obile bridges and one railroad bridge. All of these projects have resulted in major change s in the hydrology of the Caloosahatchee River Watershed. Adverse ecological imp acts in the estuary have occurr ed as a result of hydrological changes in the timing, distributi on, quality, and volume of freshwat er released in to the estuary from the watershed and Lake Okeechobee. Despite these impacts, the Caloosahatchee Estuary continues to be an important environmental and economic resource.Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-7 2.3.2 Current Conditions

The Caloosahatchee River is at the head of a vast estuarine and marine ecosystem that includes aquatic preserves (Matlacha Pass Aquatic Pr eserve, Pine Island Sound Aquatic Preserve, Charlotte Harbor National Estuary, and the Ca loosahatchee, Matlacha Pass, Pine Island, and Ding Darling National Wildlife Ref uges), along with numerous other federal, state, and local parks and recreation areas. Re storation of a healthy, productiv e aquatic ecosystem in the Caloosahatchee River is essential to maintaining the ecological integrity of these publicly owned and managed areas, as well as the associated economic activity in the watershed.

Currently, the watershed is facing a number of conditions that are having a negative impact on its health. First, the delivery of freshwater to the estuary has been altered an d is more variable with higher wet season discharges and lower dry seas on discharges. There is not enough storage capacity in the regional water management system to minimize or prevent the possible harmful effects of periodic high volume discharges of freshwater from the local watershed and Lake
Okeechobee to the Caloosahatchee River. Conver sely, during dry periods, there is sometimes not enough freshwater available in th e regional system to maintain de sirable salinity levels in the estuary.

A second problem is excessive nutrient loadin g, which has resulted in eutrophication. The Florida Department of Environmental Regulatio n, now FDEP, conducted a waste load allocation study in 1981 and concluded that the estuary ha d already reached its nutrient loading limits (DeGrove, 1981). Following the study, target concentr ations were established for chlorophyll- a , TN, and TP.

The combined result of nutrient loading and t oo much or too little freshwater flowing to the Caloosahatchee River is a degraded estuarine ec ological community. This degradation can be characterized by declines in the abundance and di versity of marine and estuarine species, poor water quality, increased phytoplankton and benthic al gae, and reductions in submerged habitat.
A lack of suitable habitat causes stress for se agrass and oysters (two primary indicators of healthy estuarine communities in south Florida) and other higher trophic-l evel species, including threatened and endangered species (e.g., mana tees, wood storks) (USACE & SFWMD, 2007).

2.3.3 Economic and Social Value

Despite a variety of human-induced impacts on the natural system, the Caloosahatchee River and Estuary continues to be an important environmen tal and economic resource for both the state and local communities. The Caloosahatchee Estuary is c onsidered part of the larger Charlotte Harbor National Estuary. A 1998 report estimated that tourism expenditures for the Charlotte Harbor area were more than $1.2 billion in 1996.

Restoration of a healthy, productiv e aquatic ecosystem is essentia l not only to maintaining the ecological integrity of a numbe r of publicly owned and managed areas (e.g., Matlacha Pass Aquatic Preserve, Pine Island Sound Aquatic Pr eserve, Charlotte Harbor National Estuary, and the Caloosahatchee, Matlacha Pass, Pine Island, and Ding Darling National Wildlife Refuges – along with numerous other federal, state, and local pa rks and recreation area s), but also to the associated economic benefits and overall quality of life in the watershed.Chapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-8 2.4 Study Area

The study area encompasses the Caloosahatchee Estuary and its watershed, which are shown on Figure 2-3 . The following subsections provide basic phys ical characteristics of the estuary and watershed as it exists today.

Land-use types are one of the phys ical characteristics of the study area disc ussed. SFWMD uses the Florida Land Use, Cover and Forms Classifi cation System (FLUCCS) to define land-use types. In the following discussions, the design ation “natural areas” includes upland forests, wetlands, barren lands, and open lands. In add ition, the designation “urban areas” includes landuse descriptions for the following categories: low, medium, and high density residential; commercial and services; industrial; extrac tive; institutional; and recreational.

Figure 2-3. Caloosahatchee River Watershed and Sub-watershed Boundary Map

2.4.1 Caloosahatchee Estuary

The Caloosahatchee Estuary is located in Lee County, southwest Florida, and consists of two
distinct estuarine areas. It includes the tidal portion of the Caloosahat chee River, which extends about 41 kilometers (km) from the W. P. Franklin Lock and Dam (S-79) downstream to Shell Point, where the river empties into San Carlos Bay. The estuary also includes the Matlacha Pass, San Carlos Bay, and Pine Island Sound areas, which lie near th e mouth of the Caloosahatchee River and are directly affected by its flows. The estuary is co nnected to Lake Okeechobee by theChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-9 Caloosahatchee River (C-43 Canal), a man-made conne ction to the Lake orig inally creat ed in the early 20 th century.

Loss of natural habitat from rive rfront and coastal development, increased urban development, construction of drainage canals, and agricultural ac tivities have affected the timing, quantity, quality, and distribution of runoff to the estuar y. Wet season flows have risen, due to land clearing and impervious areas increasing runoff, and dry season flows have decreased, due to increased water supply demand fo r agricultural and urban developm ent. The resulting biological impacts include habitat loss and degradation, decr eased biodiversity, and in creased prevalence of
marine resource diseases.

2.4.2 Caloosahatchee River Watershed

The Caloosahatchee River Watershed consists of the Caloosahatchee Estuary and all lands that drain directly or indirectly into the waters of the estuary. These lands include the drainage area of the Caloosahatchee River, the mainland area th at drains into Matlacha Pass, and the nearshore islands in the vicinity of the estuary. The wate rshed includes portions of Lee, Hendry, Charlotte, and Glades counties, and a small portion of no rth-central Collier Count y. It encompasses a drainage area of over 1,079,796 acres [1,687 mi 2 or 4,370 square kilometers (km 2 )]. A map of land-use types for the Caloosah atchee River Watershed, based on the FLUCCS, is shown in Figure 2-4. The single largest land use is natura l areas, which encompass 34.0 percent (366,765 acres) of the total watershed. Improved pastures are second, accounting for 10.8 percent of the watershed (117,152 acres), and citrus farms are third, accounting for 9 percent (96,684 acres). Urban areas are typical of the s outhwestern reaches of the waters hed, as well as areas along the Caloosahatchee River, and account for 13.5 perc ent of the total ar ea (145,280 acres).

The watershed contains sub-watersheds that may c onsist of one or more smaller units, referred to
as basins. The sub-watersheds include the S- 4, East Caloosahatchee, West Caloosahatchee, Tidal Caloosahatchee, and Coastal sub-watersheds.

2.4.3 S-4 Sub-watershed

The S-4 Sub-watershed includes only the S-4 Basin and has a total drainage area of approximately 42,504 acres (66.4 mi 2 ). The sub-watershed is located in northeastern Hendry County and southeastern Glades County. The pre dominant land use is sugar cane (32,932 acres), followed by urban areas (4,362 acres) and natural areas (2,431 acres).

Approximately 15 miles of the north boundary of the S-4 Basin run adjacent to Lake Okeechobee. The major drainage canals in the basin include the L-D1 Perimeter Canal, the C-20 and C-21 canals, and the Clewiston (Industrial) Ca nal. There are four main structures that regulate flows within the S-4 Basi n: the S-4 pump station (located at the northern end of the C20 Canal) that controls flow from the basin into Lake Okeec hobee; the S-310 navigational lock structure (located between Lake Okeechobee and the Clewiston Cana l); S-169 (a series of three gated culverts connecting the Cl ewiston Canal and C-21); and S-235 (a pair of gated culverts connecting the L-D1 and C-43 canals). The gates for the S-235 culverts ar e normally left open, allowing water to flow to the Caloosahatchee River during normal conditions. The gates are closed when the stage in Lake Okeechobee falls below 13.0 feet or during hurricane alerts. TheChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-10 main functions of the canals and structures in the S-4 Basin are removing excess water from the basin and supplying water to the basin when needed. The CRWPP addresses only the
Caloosahatchee River Basin inflow from the S-4 Basin. The LOP2TP looked at flows from the
S-4 Basin into Lake Okeechobee.

Figure 2-4. Caloosahatchee River Watershed Land Use Map

2.4.4 East Caloosahatchee Sub-watershed

The East Caloosahatchee Sub-watershed consists of the Freshwater Northeast and Freshwater
Southeast basins and is located in southern Gl ades County and northern Hendry County. It has a total drainage area of a pproximately 198,299 acres (309.8 mi 2 ). Land-use types in this subwatershed are mostly characterized by natura l areas (55,390 acres), sugar cane (52,751 acres), and improved pastures (36,795 acres).

2.4.4.1 Freshwater Northeast and Southeast Basins

The Freshwater Northeast and Freshwater Southeas t basins have drainage areas of approximately 63,724 acres (99.6 mi 2 ) and 134,575 acres (210.3 mi 2 ), respectively. The primary conveyance that serves these basins is the C-43 Canal (Caloosahatchee River), which separates the two
basins. Two control structures are located in these basins: th e S-77 gated spillway (also known as the Moore Haven Lock and Dam) and the S-78 gated spillway (also known as the OrtonaChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-11 Lock and Dam). The C-43 Canal is intersected by Lake Hicpochee about five miles west of S77. The C-43 Canal is also an integral part of the Okeechobee Waterway Navigational Project and, along with the St. Lucie Canal, provides a primary outlet from Lake Okeechobee for flood
control. Water surface elevations in these ba sins are regulated by the S-78 gated spillway, and regulatory releases from Lake Okeechobee are ma de by way of the S-77 gated spillway. The C19 Canal provides conveyance for agricultural lands to the C-43 Canal and is located in the
Freshwater Northeast Basin. Water flows north to south in the C-19 Canal before it discharges into Lake Hicpochee before entering the C-43 Canal. The operational goals of this system are to
remove excess waters from the basins and s upply surface water to the basins when needed.

2.4.5 West Caloosahatchee Sub-watershed

The West Caloosahatchee Sub-wate rshed consists of the Freshwat er Northwest and Freshwater Southwest basins. A majority of the sub-waters hed is located in southern Glades and northern Hendry counties, with smaller portions in easte rn Charlotte County, northeastern Lee County, and north-central Collier County. It has a total drainage ar ea of 349,734 acres (546.5 mi 2 ). Land-use types in this sub-watershed are primarily natura l areas (142,980 acres), citrus (69,008 acres), and improved pastures (55,555 acres).

2.4.5.1 Freshwater Northwest and Southwest Basins

The Freshwater Northwest and Freshwater S outheast basins have drainage areas of approximately 162,141 acres (253.3 mi 2 ) and 187,593 acres (293.1 mi 2 ), respectively. The primary conveyance that serves these basins is the C-43 Canal, which separates the two basins.
Two control structures are located in these basi ns: the S-78 gated spillway and the S-79 gated spillway (also known as the W.P. Franklin Lock a nd Dam). The S-78 aids in control of water levels on adjacent lands upstream. The S-79 is the most downstream structure and marks the beginning of the Caloosahatchee Estuary. The S-79 helps maintain specific water levels upstream, regulates freshwater discharges into the estuary, and serves as an impediment to saltwater intrusion upstream of the lock.

2.4.6 Tidal Caloosahatchee Sub-watershed

The Tidal Caloosahatchee Sub-watershed is loca ted in northern Lee C ounty and southwestern Charlotte County and includes the Tidal North, Tida l South, and Caloosahatchee Estuary basins.
Numerous tidal creeks drain into the Caloosah atchee Estuary Basin between S-79 and Shell
Point. Five domestic wastewater treatment facilities are permitted to discharge treated wastewater to the estuary. Several of these plants, however, currently discharge significantly less than their permitted amounts due to reuse pr ograms (most notably Cape Coral, and to alesser extent, Fiesta Village and Waterway Estates). The total drainage area of this subwatershed is approximately 262,023 acres (409.4 mi 2 ). Major land uses include natural areas (97,453 acres), urban areas (79,124 acres), a nd improved pastures (21,392 acres).

2.4.6.1 Tidal North and South Basins

The Tidal North Basin alone has a drainage area of a pproximately 163,505 acres (255.5 mi 2 ) and the Tidal South Basin has a drainage area of approximately 82,234 acres (128.5 mi 2 ). The tidalChapter 2

Caloosahatchee River Watershed Protection Plan January 2009
2-12 reach of the Caloosahatchee River separates the two basins and is the primary conveyance that serves the basins. The only cont rol structure located in the basins is the S-79 gated spillway, which acts to regulate freshwater discharges to the estuary and serves as an impediment to saltwater intrusion upstream of the spillway.

2.4.6.2 Caloosahatchee Estuary Basin

The Caloosahatchee Estuary Basin consists of th e tidal portion of the Caloosahatchee River,
which extends from S-79 downstream to the river’s mouth at Shell Point. This basin, combined
with the tidal waters of the Coastal Sub-watershe d, comprises the larger area referred to as the Caloosahatchee Estuary. The Caloosahatchee Estuary Basin has an area of 16,285 acres (25.4
mi 2 ), and is almost entirely open water. Some small land areas are included within the boundary of this basin due to mapping i rregularities. The basin is ab out 41 km long, and below the I-75 bridge the waterway widens to a maximum extent of about 2.5 km.

2.4.7 Coastal Sub-watershed

The Coastal Sub-watershed consists of the North Coastal and Nearshore basins. The Caloosahatchee River discharges into the sub-waters hed at Shell Point. The tidal waters of this sub-watershed comprise a large proportion of th e area of the Caloosahatchee Estuary. The subwatershed has an area of 227,236 acres (355.1 mi 2 ). The predominant land-use type is open water (101,055 acres), followed by natural areas (68,512 acres), and urba n areas (28,279 acres).

2.4.7.1 North Coastal Basin

The North Coastal Basin has a drainage ar ea of approximately 89,583 acres (140 mi 2 ). The majority of the basin is in western Lee Count y, with a small portion in southern Charlotte County. The northern part of the basin is drained by Gator Slough, a nd under normal conditions the entire basin discharges directly into Matlacha Pass and San Carlos Bay.

2.4.7.2 Nearshore Basin

The Nearshore Basin has a total drainage area of approximately 137,653 acres (215.1 mi 2 ). The basin is located in Lee County a nd is entirely composed of isla nds and open tidal waters. The barrier islands of Sanibel, Captiva, North Capt iva, and Cayo Costa face the Gulf of Mexico to the west. Pine Island separates Pine Island Sound from Matlacha Pass. For this study, the northern boundary between the Near shore Basin and Charlotte Harbor was arbitrarily defined as
Boca Grande Pass.

### CHAPTER 3

PLANNING PROCESSChapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-i TABLE OF CONTENTS

3.0 PLANNING PROCESS................................................................................................... 3-1
3.1 Ongoing Restoration Efforts and Other Relevant Projects.......................................... 3-2
3.1.1 Federal and State Part nership Efforts....................................................................... 3-2
3.1.1.1 Comprehensive Everglades Restoration Plan ...................................................3-2
3.1.1.2 Lake Okeechobee Regulation Schedule and Herbert Hoover Dike..................3-6
3.1.2 State and Local Efforts .............................................................................................3-7
3.1.2.1 Lake Okeechobee Watershed Construction Pr oject, Phase II Technical Plan..3-7
3.1.2.2 St. Lucie River Watershed Protection Plan.......................................................3-8
3.1.2.3 “River of Grass” Land Acquisition...................................................................3-8
3.1.2.4 Regulatory and Source C ontrol Programs ........................................................3-8
3.1.2.5 C-43 Water Quality Treatment and Testing Facility ......................................3-10
3.1.2.6 Lower Charlotte Harbor Surface Water Improvement and Management
Plan ................................................................................................................. 3-11
3.1.2.7 Lee County/City of Sanibel ............................................................................ 3-11
3.1.2.8 Southwest Florida Regional Planning Council...............................................3-11
3.1.3 Stormwater Management Programs .......................................................................3-13
3.1.3.1 Charlotte County Stormwater Management Program.....................................3-13
3.1.3.2 Lee County Stormwater Management Program .............................................3-13
3.2 Problems ....................................................................................................................3-1 4
3.2.1 Ecological Problems in the Caloosahatchee Estuary .............................................3-14
3.2.1.1 Submerged Aquatic Vegetation ......................................................................3-15
3.2.1.2 Oysters ............................................................................................................3-15
3.2.1.3 Algal Blooms .................................................................................................. 3-16
3.2.2 Potential Causes .....................................................................................................3-17
3.2.2.1 Discharges from Lake Okeechobee Regulat ory Releases and the Caloosahatchee
River Watershed..............................................................................................3-17
3.2.2.2 Insufficient Flows from the Cal oosahatchee River Watershed.......................3-18
3.2.2.3 Loss of Shoreline Habitat and Function..........................................................3-18
3.2.2.4 Increased Nutrients a nd Contaminants ...........................................................3-18
3.3 Planning Objectives ...................................................................................................3-19
3.3.1 Caloosahatchee Estuary Salinit y Envelope Objective............................................ 3-19
3.3.2 Caloosahatchee River Watershed Water Quality Objectives .................................3-19
3.3.3 Caloosahatchee River Watershed Water Quantity Objective.................................3-19
3.4 Planning Constraints .................................................................................................. 3-19
3.4.1 Water Supply and Flood Protection .......................................................................3-19
3.4.2 Minimum Flows and Levels...................................................................................3-20
3.4.3 Lake Okeechobee Proposed Target Mi nimum Water Level Condition .................3-20
3.4.4 Lake Okeechobee Service Area Irrigation Demand...............................................3-20
3.4.5 State Water Quality Standards ...............................................................................3-21
3.5 Performance Measures and Indicators....................................................................... 3-21Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-ii LIST OF TABLES

3-1 Current Recommended Fre quency Distribution (EST05) of Inflow from S-79............ 3-17 3-2 CRWPP Problems, Objectives, Performance Measures and Indicators, and Targets ... 3-23Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-1 3.0 PLANNING PROCESS

A comprehensive and systematic planning process was used to develop the Caloosahatchee River Watershed Protection Plan (CRWPP). The planning was conducted by the coordinating agencies, which included staff from the South Florida Water Management District (SFWMD), Florida Department of Environmental Protection (FDEP), Florida Departme nt of Agriculture and Consumer Services (FDACS), Lee County, and aff ected municipalities. Planning was performed in consultation with the CRWPP Working Team , which included cooperating agencies (Lee County and affected municipalities) , stakeholders, and the interested public. Signif icant steps in this process included the following:

1. Characterization of existing conditions – Existing conditions in the CRWPP study area were characterized by reviewing available da ta on previous studies, ongoing projects, and planned initiatives in the Caloosahatchee Ri ver Watershed. Current and future planned projects that would either cont ribute to the achievement of CRWPP objectives or could be directly integrated into the plan we re also identified during this review.

2. Identification of problems – Water resource construction proj ects are generally planned and implemented to solve problems, to meet chal lenges, and to seize o pportunities. In the context of planning, a problem can be thought of as an undesirable condition. Identification of problems gives focus to the planning effort and aids in the development of planning objectives. For the CRWPP planning process, water resource problems were identified through an interagency brainstorming process and a review of historical documents.

3. Determination of planning objectives – Planning objectives are stat ements of what a plan is attempting to achieve. The objectives communi cate to others the in tended purpose of the plan. The CRWPP planning objectives were developed from the problems and opportunities identified in the working team meetings. Plans are intended to focus on the identified problems and take advantage of recognized opportunities.

4. Identification of planning constraints – Constraints are restrictions that both, define and limit the extent of the planning process and, in some context, support and inform it. For the CRWPP planning process, the constraints were identified through a working team brainstorming process concurrent with the identification of prob lems and opportunities.

5. Selection of performance measures – Performance measures and indicators are benchmarks used to guide formulation of alternative plan s and evaluate plan performance. For the CRWPP planning process, performance measures and/or indicators for water quality and quantity were identified and c onsistent with previous and cu rrent planning processes.

6. Identification of management measures – A management measure is a current or future feature, activity, or technology th at can be implemented at a sp ecific site wi thin the study area to address one or more planning objectiv es. Management measures are the building blocks of alternative plans. A comprehensive list of management measures was prepared and evaluated through the collectiv e input of the Caloosahatch ee River Working Team (seeChapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-2 Chapter 4.0 for a description of the working team). Using predetermined criteria, the management measures were screened to eliminate features or activities th at did not contribute to meeting the planning goals and objectives.

7. Formulation of alternatives – A set of four alternative pl ans was formulated by combining individual management measures.

8. Evaluation of alternatives – The performance of each indi vidual alternative plan was determined using agreed upon methodologies and modeling applications. Performance
measures and indicators were then used to eval uate the performance of individual plans to the objectives of the CRWPP.

9. CRWPP Selection - The plan that best met the legislativ e goals was selected as the CRWPP.

10. CRWPP Processing – Planning-level budget estimates, an implementation schedule, and an adaptive management plan were devel oped for the CRWPP. Funding needs and opportunities were identified.

Routine, periodic Northern Everglades interage ncy meetings and working team meetings were held to engage the cooperating agencies, st akeholders and the public throughout the planning process. Through these meetings, public input was sought and incorporated into the decisionmaking process, as appropriate.

3.1 Ongoing Restoration Efforts a nd Other Relevant Projects

Numerous ongoing or planned projects in the Ca loosahatchee River Watershed are aimed at improving water quality, quantity, timing and dist ribution, which will complement and support the CRWPP goals and objectives. A key benefit of the Northern Ever glades and Estuaries Protection Program (NEEPP) legi slation is capturing all restor ation-type projects under one umbrella plan. Some of the major projects , which complement and support the CRWPP goals and objectives, are described in the following sections.

3.1.1 Federal and State Partnership Efforts

Several completed or planned fede ral and state projects contribute to the goals and objectives of the CRWPP. The effects of these projects will be seen on a regional scale. Projects in this section include the Comprehensive Everglades Re storation Plan (CERP) – Caloosahatchee River (C-43) West Basin Storage Reservoir Project Implementation Report (PIR), Southwest Florida Feasibility Study, and the Lake Okeechobee Watershed Project.

3.1.1.1 Comprehensive Everglades Restoration Plan

Recognizing that construction of the federally-built water management system resulted in unintended consequences on the natural system, Congress authorized the Restudy of the Central and South Florida Project in the early 1990s to a ssess the measures necessary to restore the south Florida ecosystem. Upon completion of the Rest udy of the Central and S outh Florida Project, CERP was proposed in 1999 and approved as the fr amework for Everglades restoration in theChapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-3 Water Resources Development Act of 2000. The joint state-federal partnership of CERP provides a framework and guide to restore, protect, and preserve the water resources of central and southern Florida, including the Everglades. The major co mponents of CERP are surface water storage reservoirs, water preservation area s, and management of Lake Okeechobee as an ecological resource. Other major components include improved water deliveries into the estuaries, underground water st orage, treatment wetlands, impr oved water deliveries to the Everglades, removal of barriers to sheet flow, storage of water in existing quarries, reuse of wastewater, pilot projects, improved water c onservation, and additional feasibility studies. The CERP projects that have the greatest imp act on the Caloosahatchee Estuary are the Caloosahatchee River (C-43) We st Basin Storage Reservoir Project, the Lake Okeechobee Watershed Project, Southwest Florida Feasibil ity Study, and the Aquifer Storage and Recovery (ASR) projects. These projects are su mmarized in the following subsections.

3.1.1.1.1 Caloosahatchee River (C-43) West Basin Storage Reservoir Project

The purpose of the Caloosahatchee River (C-43) West Basin Storage Rese rvoir project is to improve the timing and quantity of freshwater flow s to the Caloosahatchee Estuary. Currently, the South Florida flood control system stores water in Lake Okeechobee. Excess water is discharged when the lake rises to a level that threatens flooding in the Everglades Agricultural Area, the health of the lake, or the integrity of the Herbert Hoover Dike. The resulting unnatural surges of freshwater down the rive r reduce estuarine salinity levels.

Alternately, during drought peri ods when irrigation demands ar e high, little or no water is released to the river. Deprived of freshwat er, estuarine salinity levels rise, which impacts seagrasses and oysters, species that indi cate the overall health of the estuary.

The Caloosahatchee River (C-43) West Basin Storage Reservoir will be used to ensure a more natural, consistent flow of freshwater to the es tuary. Excess basin stormw ater runoff, along with regulatory releases from Lake Okeechobee, will be captured and stored in a reservoir and released slowly, as needed, to restore and mainta in the estuary. This pr oject may also provide recreation and water supply benefits.

The Tentatively Selected Plan as identified in the Caloosahatchee River (C-43) West Basin Storage Reservoir PIR provide s approximately 170,000 acre-feet of aboveground storage volume in a two-cell reservoir, with normal full pool depths varying from 15 feet at the southeast corner to 25 feet at the northwest corner. The pl an encompasses approximately 10,500 acres, acquired by the Department of the Interior with federal Everglades restoration fu nds and by the State of Florida. Major features of the Tentatively Selected Plan include external and internal embankments, perimeter canals, two pump stations , internal controls, an d outflow water control

structures.

Potential benefits from project implementation appear to be far-reaching. Based on a salinity model, the area within the Caloosahatchee estuar ine system that is beneficially affected conservatively encompasses approximately 71,000 acres in the Caloosahatchee River, San Carlos Bay, and a portion of Pine Island Sound. The tota l area benefited by project implementation will likely be much larger, including portions of Matlach a Pass, Pine Island Sound, Estero Bay, and
the Gulf of Mexico.Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-4 In addition, the Tentatively Selected Plan pr ovides deepwater habitat within the impoundment cells, including refugia (created by embankment excavation) for fish and other aquatic animals during extremely dry periods. The perimeter canal may also includ e littoral areas which may be utilized as forage and nursery habitat by wading birds. The configurati on and extent of these areas will be determined during detailed design work.

Finally, reservoir operations wi ll improve water quality in the Caloosahatchee Estuary, since
some of the nutrient-laden runoff and lake water w ill be stored in the reservoir, allowing for the settling of nutrients and other pollu tants within the reservoir cells pr ior to delivery to the estuary. Removals of nutrients by mechanical and biol ogical processes within the reservoir were estimated to be 7.3 metric tons per year (mt/yr) for total nitrogen (TN) (Knight, 2008).

3.1.1.1.2 Lake Okeechobee Watershed Project

The Lake Okeechobee Watershed Project selected plan includes six struct ural components and a modification to the existing Lake Istokpoga Re gulation Schedule. The components are as
follows:

• Taylor Creek/Nubbin Slough Reservoir – This 1,984-acre storage f acility is located in the S-191 Sub-basin and will provide a maximum capacity of 32,000 acre-f eet at an average depth of 18 feet. It will receive inflows from and discha rge back to Taylor Creek. This reservoir feature will remove approximately th ree-to-five mt/yr of to tal phosphorus (TP) by sediment settling. The location and configuration of this feat ure matches with that of the Taylor Creek Reservoir being considered under the Lake Okeechobee Fast-Track (LOFT)

program.

• Taylor Creek/Nubbin Slough Stor mwater Treatment Area (STA) – This 3,975-acre treatment facility is located in the S-135 Sub-basin and will treat flows from S-133, S-191,
and S-135 sub-basins. This STA is expected to redu ce TP loads by 19 mt/yr. The location of this facility overlaps with th at of the Lakeside Ranch STA being considered under LOFT.

• Kissimmee Reservoir – This storage facility consists of a 10,281-acre aboveground reservoir with a maximum storage capacity of 161,263 acre-feet at an average depth of 16
feet. The feature is located in the C-41A Sub- basin. It will receive flow from and discharge back to the C-38 Canal (Kissimmee River). A s econdary discharge structure will also allow
for releases to the C-41A Canal.

• Istokpoga Reservoir – This 5,416-acre storage facility wi ll be located in the C-40A and C41A sub-basins and will provide a maximum storage capacity of 79, 560 acre-feet at an average depth of 16 feet. It will receive inflow from and discharge back to the C-41A Canal.

• Istokpoga STA – This 8,044-acre treatment facility will be located in the L-49 Sub-basin. It
will receive flow from the C-41 Canal and discha rge treated water to Lake Okeechobee. This facility is expected to reduce TP loads by approximately 29.1 mt/yr.Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-5 • Paradise Run Wetland Restoration – This 3,730-acre wetland restor ation site is located at the ecologically significant conf luence (under pre-development c onditions) of Paradise Run,
oxbows of the Kissimmee River and Lake Okeechobee. Under restored conditions it would have a rain-driven hydrology, unles s future efforts could link th e site to the surface flows
from the C-38 or C-41A canals.

• Lake Istokpoga Regulation Schedule – The recommended revised Lake Istokpoga Regulation Schedule is based on an El Niño operating strate gy. This operating strategy
consists of a combined assessment of existin g hydrologic conditions and long-term climatic forecasts at the beginning of each dry season to determine whether normal, wet, or dry year
recession rule curves should be used. The revisions to the Lake Istokpoga Regulation Schedule will help to restore the natural variabil ity to the system which will then restore the natural variability in inflows to downstream systems.

3.1.1.1.3 Southwest Florida Feasibility Study

The Southwest Florida Feasibility Study (SWFFS) covers approximately 4,300 square miles of Florida’s southern peninsula. The study area encompasses all of Lee County, most of Collier and Hendry counties, and portions of Charlotte, Glades, and Monr oe counties. In the SWFFS study area, the Caloosahatchee Rive r serves as the western outlet for discharges of stormwater
and flood releases from Lake Okeechobee to the Gulf of Mexico and is a major source of surface water supply for the basin. The SWFFS will provide a comprehensive review of the water issues that face southwest Florida, a nd is not limited to those relate d to the Central and Southern Florida Project. The study will develop and addre ss alternatives that pr otect and restore early
wet-season and overland sheet flow conditions that provide for re storation of amphibian, reptile, macro-invertebrate, and forage fish populations. The SWFFS will consider the impacts of freshwater pulsing and/or deplet ion of freshwater flows to estu aries, improvement of shellfish and fisheries habitat, and protec tion and restoration of shorelin e wetlands that are unique to southwest Florida, such as mangroves. Wide-ra nging federal- and state- listed threatened and endangered species, such as the Florida panther, wood stork, and Florida black bear, as well as migratory birds and endemic species, will be prio ritized in the study’s a lternative development and analysis. The study will look at the protection and/or restoration of existing natural resources through land acquisition and conservati on easement. The study will plan for proper infrastructure before, or as development occurs, not after. The SWFFS will develop a water resources plan for the entire southwest Fl orida area and provide for ecosystem and marine/estuary restoration and protection, envi ronmental quality, flood protection, water supply and other water-related purposes.

3.1.1.1.4 Aquifer Storage and Recovery

Aquifer Storage and Recovery (ASR) involves the concept of storing part ially treated surface water in the subsurface, by pumping the water through wells that are used for both recharge (injection) and recover. During st orage, the water would remain in the Floridan aquifer. Within the Caloosahatchee River Basin, it is anticipated to help minimize high-volume water releases to the estuary. During dry periods, wa ter recovered from ASR wells w ould be utilized to maintain
surface water levels within the River and associat ed canals and to maintain a minimum flow of freshwater to the estuary. AS R technology has been demonstrated to be feasible, but has notChapter 3

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3-6 been tested on the scale that is required for CERP. The ASR pilot projects will provide the platforms for the ASR Regional Study to addre ss the uncertainties id entified by the National Academy of Sciences.

Pilot projects were authorized for several compone nts of the CERP that were to be implemented on a very large scale. The components of the CERP had sufficient detail for plan selection, but
did not have sufficient detail for traditional U.S. Army Corps of Engineers feasibility studies.

The pilot projects will prov ide further information rega rding the hydrogeological and geotechnical characteristics of the upper Florid an Aquifer System within the region and the ability of the upper Floridan Aquifer System to ma intain injected water for future recovery. ASR pilot projects have been initiated at various locations around Lake Okeechobee, the Hillsboro Canal (in southern Palm Beach County), and with in the Caloosahatchee River Basin. The pilot projects also will evaluate th e available technology and contribute information necessary for additional plan formulation and devel opment by the ASR Regional Study team. A comprehensive Technical Data Report of the AS R technologies and cycle testing responses will be prepared. From the information collected at the sites, the ASR Regional Study Team may determine the optimal number of wells, where to site these wells, and any specific treatment requirements to operate the ASR systems.

A pilot project was initiated in the Caloosahat chee River Basin in 2003, at the location of Berry Groves, just west of LaBelle. The results of the exploratory well indicated that high capacity ASR technology would not be feasible at that location. Presently, the Caloosahatchee River ASR pilot project is on “hold,” unt il an alternative site is select ed for future exploratory work.

3.1.1.2 Lake Okeechobee Regulation Schedule and Herbert Hoover Dike

A regulation schedule is a federally authorized to ol used by water managers to manage the water
levels in a lake or reservoir. Water in Lake Okeechobee previ ously was managed in accordance with the Water Supply/Environmental (WSE) Re gulation Schedule that was approved in 2000. On April 28, 2008, the USACE approved the new 2008 Lake Okeechobee Regulation Schedule. Therefore, all surface wate r releases from Lake Okeechobee to th e estuaries after this date are in
accordance with the new schedule.

Water management decisions regarding Lake Okeechobee are highly depe ndent upon the Herbert
Hoover Dike. The Herbert Hoover Dike is an earthen levee that was constructed around the southern portion of Lake Okeec hobee for flood control purposes approximately 70 years ago. For decades, the dike has served this purpose; howeve r, it is in need of re habilitation. Until the rehabilitation is complete, the USACE’s goal is to manage Lake Okeechobee water levels at a safe range for the dike, between 12.5 and 15.5 feet throughout the ye ar (USACE, 2008b).

The previous WSE schedule was developed to improve performance of Lake Okeechobee's littoral zone habitat and water supply without imp acting the other lake management objectives. The WSE schedule for maintaining water levels with in the lake has proven ineffective in meeting these goals. During ex treme wet weather events in the 2004 and 2005 hurricane seasons, Lake
Okeechobee rose to 17 and 18 feet National Ge odetic Vertical Datum (NGVD) (USACE, 2008b; USACE, 2008c). These high levels are not cons idered within the safe range for the HerbertChapter 3

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3-7 Hoover Dike, as determined by the USACE. Fu rthermore, implementing the WSE has resulted in ecological impacts to Lake Okeechobee fr om fluctuating water levels and to the
Caloosahatchee River and St. Lucie River estuarie s from excessive freshwater releases (USACE, 2007).

The Lake Okeechobee Regulation Schedule Study (L ORSS) was initiated in late 2005 to develop a new water regulation schedule a llowing operational changes within the existing infrastructure to address these issues. Based solely on curr ent water storage capacity in the system, the operational changes will allow for quicker response and operational flexibility to fluctuating lake conditions and tributary inflows. An additional feature of the new schedule is that it allows for the capability to initiate releases to the Caloos ahatchee River and St. Lucie River estuaries and the Water Conservation Areas (WCAs) to the s outh, at lower levels th an under the current
schedule. The low-volume releases should add flows to the Caloos ahatchee Estuar y, but not in excessive quantities, helping maintain appropriate salinity ranges (USACE, 2008b).

Upon fully implementing the Lake Okeechobee Regulation Schedule (USACE, 2008a), water managers began conducting another regulatio n schedule study (Sys tem Operating Manual Study). This study will take into account construction of early CERP projects, including projects expedited by SFWMD, which will provide many additional options for water storage and management. Water managers will also take into account an adjusted lake level afforded by the
Herbert Hoover Dike Rehabilita tion Project in future revision s to the regulation schedule.

3.1.2 State and Local Efforts

There are several state and local government rules, plans and programs in place that contribute to the goals and objectives of the CRWPP. In addition to the Lake Okeechobee Watershed Construction Project, Phase II Technical Plan (LOP2TP) and the St. Lucie River Watershed Protection Plan (SLRWPP), these water quality initiatives include source control programs, stormwater management programs, and local government water quality resolutions.

3.1.2.1 Lake Okeechobee Watershed Constructi on Project, Phase II Technical Plan

The LOP2TP was developed in response to NEEPP. The purpose of the LOP2TP is to provide an overall strategy for improving quality, quan tity, timing, and distribution of water in the Northern Everglades ecosystem and achieve th e TP Total Maximum Daily Load (TMDL) for Lake Okeechobee. The plan is intended to achieve the following objectives:

• Meet Lake Okeechobee Watershed TMDLs;

• Manage Lake Okeechobee water levels w ithin an ecologically desirable range;

• Manage water flows to meet desirabl e salinity ranges for the St. Lucie and Caloosahatchee estuaries through the delivery of appropriate freshwater releases from Lake Okeechobee made possible by additional water storage north of the lake; and

• Identify opportunities for alternative water ma nagement facilities and practices in the watershed to meet specified goals.

Many of the projects identified in the LOP2TP are also included as management measures in this
CRWPP.Chapter 3

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3-8 3.1.2.2 St. Lucie River Watershed Protection Plan

The SLRWPP also was developed in response to NEEPP. As with this CRWPP, the SLRWPP
addresses undesirable water flow s and nutrient loading to the St . Lucie River and has the same three main components: (1) a Construction Proj ect, (2) a Pollutant Cont rol Program, and (3) a Research and Water Quality Monitoring Program.

3.1.2.3 “River of Grass” Land Acquisition

The “River of Grass” Land Acquisition is a pr oposed real estate tran saction of historic proportions between SFWMD and United States (U S) Sugar Corporation which could bring over 180,000 acres of agricultural lands in to public ownership to help re vive, restore, and preserve America’s Everglades. The proposed acquisition of US Sugar Corporation lands when finalized will provide the unprecedented opportunity to st ore and treat water on a scale never before envisioned for the benefit of the Everglades ecosystem. The acquisition will build upon and enhance CERP and the State’s Northern Everglad es Program. If the acquisition is successful, initial conceptual planning will be a SFWMD/S tate led public effort utilizing the Water Resources Advisory Committee. The potential use of lands acqui red within the Caloosahatchee River Watershed will be included in this planning process.

3.1.2.4 Regulatory and Source Control Programs

Pollutant source control is integral to the success of any water resource protection or restoration program. There are several existing source contro l programs in the watershed that are evolving and expanding through cooperative and complement ary efforts by FDEP, F DACS, and SFWMD.

An overview of each of the existing nutrient s ource control programs in the Caloosahatchee River Watershed is provided below. Details of the comprehensive CRWPP Pollutant Control Program, including improvements to existing progr ams, are described in Chapter 7 of this
document.

3.1.2.4.1 Environmental Resource Permit Program

The existing Environmental Resource Permit (ERP) program is a statewide permitting program that began in the mid-1990s and is implemen ted by both FDEP and the water management districts. The ERP program regulates activities in, on or over wetlands or other surface waters and the management and storage of all surface wate rs. This includes activities in uplands that alter stormwater runoff as well as dredging a nd filling in wetlands and other surface waters. Generally, the program's purpose is to ensure that activities do not degrade water quality, compromise flood protection, or adversely affect the function of wetland systems. The program applies to new activities only, or to modifications of existing activ ities, and requires an applicant to provide reasonable assurances that an activity will not cause adverse impacts to existing surface water storage and conveyance capabilities, and will not adversely affect the quality of receiving waters such that any a pplicable water quality standards wi ll be violated. Therefore, the applicant must address the long- term water quality impacts of a proposed activity and must prevent any discharge or release of pollutants from the system that will cause water qualityChapter 3

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3-9 standards to be violated. Rule revisions to the ERP Program are being proposed to improve regulatory criteria as described in Chapter 7 of this document.

3.1.2.4.2 Proposed Caloosahatchee River Watershed Regulatory Nutrient Source Control Program

The existing SFWMD Chapter 40E-61, Florida Administrative Code (F.A.C.), Regulatory Nutrient Source Control Program was adopted in 1989 (as a result of the Lake Okeechobee Surface Water Improvement and Management Plan ), to provide a regulatory source control program specifically for phosphorus (P). Th e NEEPP legislation expanded the program boundary to the Caloosahatchee River Watershe d as well as St. Luci e River Watershed and included N, in addition to P, as the focus of nu trient source controls. The program applies to new and existing agricultur al and non-agricultural activities, with the goal of reducing nutrients in offsite discharges.

SFWMD is proposing amendments to Chapter 40E- 61, F.A.C., to be compatible with NEEPP. To ensure consistency with the CRWPP, rule development is exp ected to begin in early 2009. Additional details on this program and its expansi on can be found in Chapter 7 of this document.

3.1.2.4.3 Agricultural Best Management Practices

The Florida Watershed Restor ation Act, Section 403.067, F.S. (1999), authorized FDACS to develop, adopt by administrative rule, and impl ement agricultural Best Management Practices (BMPs) statewide. In the en suing years, FDACS has devel oped and adopted comprehensive BMP manuals for citrus, vegeta bles, and agronomic crops, c ontainerized nurseries, and sod production. BMP manuals for sod, beef cattle production and the eq uine industry are scheduled to be adopted by administra tive rule by early 2009.

Agricultural landowners participating in FDACS BMP programs must implement nutrient management plans and maintain records verifying nutrient management plan implementation. In addition, typical BMPs include ir rigation management (which in cludes an evaluation of the irrigation system efficiency), surface water mana gement (installation of modern water control structures), and comprehensive ditch maintenan ce programs. As of th e approval date of the CRWPP, agricultural acreage within Glades, He ndry, and Charlotte counties enrolled in FDACS BMP Program totaled 242,000 acres.

Critical components in the success of the agri cultural BMP program ar e the collection and analysis of data to determine whether BMPs are working as anticipated. The interagency team is committed to continue funding on-farm BMP demonstr ation projects at representative sites that will provide both BMP effectiveness data. In cooper ation with the University of Florida Institute of Food and Agriculture Scien ces (UF/IFAS), FDACS is c onducting BMP demonstration and evaluation projects at representa tive sites for all agricultural land uses in the watershed as funding becomes available.Chapter 3

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3-10 3.1.2.4.4 Urban Best Management Practices

There is a continued focus in the Caloosahatch ee River Watershed on reducing the impacts of non-point source pollution from urban land use th rough rules, public education programs, and other non-structural BMPs. Urban BMPs are pract ices determined by the coordinating agencies to be the most effective and practicable on-location means, including economic and technological considerations, for improving water quality in urban discharges. Examples of urban BMPs implemented in the Caloosahatchee River Watershed include the Florida Yards and Neighborhoods Program, comprehensive planning init iatives, and the Urban Turf Fertilizer Rule,
which are discussed in more detail below.

The Florida Yards and Neighborhoods Program is an excellent example of a nonstructural urban BMP program. By educating citizens and build ers about proper landscape design (e.g., “right plant-right place” practices), this program is help ing minimize the use of pesticides, fertilizers and irrigation water. FDEP has an ongoing monitoring program to determine the effectiveness of this program in reducing nutrient loads.

Comprehensive planning initiatives involve ci ties, counties, and ot her entities in the Caloosahatchee River Watershed that are respons ible for comprehensive planning and land development approvals. FDEP works with those entities to review current comprehensive plans and associated land development regulations to en sure that they promote low impact design and proper stormwater treatment. The objective is to implement low impact design measures basinwide to achieve additional nutrient reductions and water storage.

In August 2007, FDACS adopted a st atewide Urban Turf Fertilizer Rule. The rule limits the P
and N content in fertilizers for urban turf and lawns, thereby significantly reducing the amount of P and N applied in urban areas and limiting the amount of those compounds reaching Florida’s water resources. It requires that all fertilizer pr oducts labeled for use on urban turf, sports turf
and lawns be limited to the amount of P and N n eeded to support healthy turf maintenance. FDACS expects a 20 to 25 percent reduction in N and a 15 percent re duction in P in every bag of fertilizer sold to the public. The rule was developed by FDACS with input from UF/IFAS, FDEP, the state’s five water mana gement districts, the League of Cities, the Association of Counties, fertilizer manufacturers, and concerned citizens. It enhances efforts currently underway to address excess nutrient s in the Northern and Southern Everglades. As a component of the Lake Okeechobee and Estuary Recovery (L OER) Plan, the new rule is an essential component to improve water quality through nutrient source control.

3.1.2.5 C-43 Water Quality Treatment and Testing Facility

The C-43 Water Quality Treatment and Testing Faci lity is a joint project with Lee County and SFWMD and will develop, design, and build a testi ng facility that will study nitrogen removal methods. The results of the studies and system performance will be used to improve the methods of water quality treatment in the Caloosahatchee Basin. The facility will be located along the Caloosahatchee River in Glades County very near the Ortona Lock and Dam. It is a 1,350 acre project located on a 1,800 acre site. A portion of the site has been set aside for recreational purposes and use by Glades County.Chapter 3

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3-11 3.1.2.6 Lower Charlotte Harbor Surface Water Improvement and Management Plan

The Lower Charlotte Harbor (LCH ) is listed as a Tier 1 Priority Water Body. The designation came from the SFWMD Governing Board decision in 2003 to amend and combine the then listed Tier 2 Caloosahatchee River and Estero Bay, a nd the Tier 3 Pine Island Sound, Matlacha, and Ding Darling into the LCH. In preparati on for development of the LCH Surface Water Improvement and Management (SWIM) pla n, a LCH SWIM Reconnaissance Report was authorized in 2004. Upon completion of the R econnaissance Report the LCH SWIM Plan was developed and approved in February of 2008. The LCH SWIM Pl an’s basic strategy consists of restoring, protecting, and managing the surface wa ter resources of the LCH Watershed through the use of a prioritized, objective, applied, sustainable, ecosystem, or watershed approach with periodic public re view and input.

The Plan is organized around a system of goals, init iatives, strategies, and action steps. In this system, the goals are broad-base d and identify objectives of SFWM D. Initiatives are general categories that have been used to divide the plan into dis tinct subject areas developed by SFWMD staff. Strategies are more detailed de scriptions of the underlying work proposed to achieve results. The strategies identify the approach es and methods that will be used to implement the initiatives. Action steps re present specific activit ies under each strategy suggested to reach project delivery. Each actio n step has an associated estimate of the funding requirements and schedule for completion. These action steps, as well as the strategies and
initiatives referenced above are not mutually exclusive, and may be undertaken co ncurrently or sequentially. There are six primary initiatives to address within the watershed, which are: Water Quality; Stormwater Quantity; Watershed Mast er Planning and Implementation; Habitat Assessment, Protection, and Rest oration; Outreach; and Funding.

3.1.2.7 Lee County/City of Sanibel

As a source control measure, Lee County and the City of Sanibel have adopted un ique fertilizer
ordinances. These ordinances limit the amount of P and N that can be ap plied to landscapes by landscape professionals as well as property owners. All landscape professionals must also attend and pass a landscape BMP course and be certif ied by the county. Addi tionally, Lee County and the City of Sanibel have esta blished outreach programs and Lee County has set aside dedicated funding for staff positions to administer their program.

Lee County has budgeted for pollutant source c ontrol through its Capita l Improvement Plan (CIP). Over $200 million in projects for water qu ality improvements are either under way or are planed through the CIP process.

3.1.2.8 Southwest Florida Regional Planning Council

The Southwest Florida Regional Planning Counc il (SWFRPC) formed the Lower West Coast
Watersheds Subcommittee in 2006 to address the de teriorating condition of the Caloosahatchee River and Estuary. The Subcommittee’s purpose woul d be to review existing plans to a five-year horizon, identify gaps preventing an effec tive basin water quality initiative, make recommendations for improvement, and propose a successor coordination tool/entity to implement the emerging recommendations of the SWFFS and the TMDL plan. Through theChapter 3

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3-12 work of this subcommittee, five resolutions ha ve been passed by the SWFRPC that should have a positive impact on water quality in the watershed. The resolutions address fertilizer, wastewater, wastewater package plants, onsite wastewater systems planning, treatment, and management, and general stormwater management. The resolutio ns are described in the following subsections.

3.1.2.8.1 Fertilizer Resolution (SWF RPC Resolution #2007-01)

The Fertilizer Resolution provides specifi c recommendations and guidelines for the consideration of local governme nts within Southwest Florida as they regulate the use of fertilizers containing N and/or P. This resolution covers the governance of all segments of the community that may be involved in fertilizer appl ication, such as the ge neral public, commercial, institutional, and retail sector s. A broad range of recommenda tions, such as public education, licensing programs, impervious surfaces, buffer zone s, and application specifics, were included to cover the diverse community that may apply fe rtilizers and may impact water quality in the
Caloosahatchee River Basin.

3.1.2.8.2 Wastewater Resolution (SWFRPC Resolution #2007-02)

The Wastewater Resolution gives Southwest Fl orida local government’s specific guidance for the regulation and control of treated wastewater discharges containing N and/or P. This resolution covers multiple types of wastewater treatment scenarios such as reuse applications, processing and disposal of solids/sludge, and the di scharge of treated effluent to open waters or ground water aquifers. All of the recommenda tions support improving and maintaining water and habitat quality through the redu ction of nutrients within the tr eated wastewater stream and/or
reduction of the wastewater stream itself into water bodies and adjacent areas affected by groundwater transport.

3.1.2.8.3 Wastewater Package Plant Resolution (SWFRPC Resolution #2007-05)

The Wastewater Package Plant Resolution suppor ts the reduction and elimination of surface water discharges from small wastewater treatment facilities. It provides specific recommendations and guidelines to be consid ered by local government jurisdictions in Southwest Florida for the regulat ion and control of treated wast ewater discharges containing N
and/or P.

3.1.2.8.4 Managed Care Model Guidance for Onsi te Wastewater Systems Planning, Treatment and Management Resoluti on (SWFRPC Resolution #2008-02)

This resolution provides specific recommen dations and guidelines for the regulation, management, and control of onsite sewage treatment and disposal systems. These recommendations include regular maintenance and inspection of exis ting onsite wastewater systems, adopting inspection standards, and requir ing training for system inspectors, in addition to other efforts. Through th ese recommendations, the negative environmental effects of onsite sewage treatment and disposal systems will be minimized for Southwest Florida lakes, canals, estuaries, interior wetlands, rivers, and near shor e waters of the Gulf of Mexico. This resolution
also will contribute to the re gulation of nutrients and the prev ention of pathogen contaminationChapter 3

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3-13 entering the water bodies in this region, which will be a crucial step toward improving and maintaining water and habitat quality.

3.1.2.8.5 Stormwater Resolution (SWFRPC Resolution #2007-11)

The purpose of this Resolution is to provide specific recommendations and guidelines to be considered by local government jurisdictions in Southwest Florida for the regulati on, control, use, and treatment of stormwater containing N and/or P. This will assist with the protection of Southwest Florida's lakes, rivers and streams, and groundwater. Additionally, this will assist with the proper selection, opera tion and management of existing stormwater systems to prevent the further degradation of groundwat er, lakes, rivers and streams.

3.1.3 Stormwater Management Programs

The Federal Clean Water Act was amended in 1987 to require the U.S. Environmental Protection Agency (USEPA) to regulate storm water disc harges through National Pollutant Discharge Elimination System (NPDES) permit program. This program controls water pollution by regulating point sources, such as pipes or man- made ditches, which di scharge pollutants into
waters of the United States. Indus trial, municipal, and other faci lities that are connected to a municipal system must obtain permits if their discharges go directly to surface waters. The Stormwater Management Program is a fundamental element of the NPDES program and contains action items that must be implemented by the permit holder. Lee County and Charlotte County are stormwater NPDES permittees and have Stormwater Management Programs that are described in the following section.

3.1.3.1 Charlotte County Stormwater Management Program

On June 2003, Charlotte County submitted an app lication to obtain a NPDES Phase II municipal permit, which was granted in July 2003. The permit allows the creation of a county-wide Stormwater Management Plan with a five-year imp lementation schedule. Every five years, the county has to renew the permit a nd prove that the plan is bei ng implemented. Annual reports will illustrate Charlotte County' s continuing efforts to meet federal standards (CCPU, 2008).

3.1.3.2 Lee County Stormwater Management Program

In April 2003, Lee County submitted an applicati on to obtain a NPDES municipal permit, which was granted in March 2004. The Stormwater Management Program for the community contained 14 required program el ements. A number of the elements identified controls for specific pollutants such as pestic ides, herbicides, fertilizers, sa nitary seepage, and construction site runoff. Other elements addressed public ed ucation, system operation and maintenance, and inspection program implementation. An annual reporting program provides proof of their continuing effort to protect water quality and meet federal standards. Th e county is required to show progress on Stormwater Management Program elements as part of the permit renewal process (USEPA, 2003).Chapter 3

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3-14 3.2 Problems

The quality and quantity of water entering the Caloosahatchee Estuary directly affects the health of the system. Evaluating water quality and qu antity can determine l ong term trends and the state of this estuary. Historic al drainage patterns within th e Caloosahatchee River Watershed have been highly altered since pre-drainage times. Loss of natural habitat from riverfront and coastal development, increased urban development, construc tion of drainage canals, and agricultural activit ies have affected the timing, quantity, qua lity, and distribution of runoff to the estuary. Wet season flows have intensified, due to increased runoff resulting from land clearing and impervious areas; dry season flows have d ecreased, due to increased water supply demand for agricultural and urban development. Loss of storage within the watershed has resulted from the watershed being drained to accommodate grazing, citrus farms and other crop farms.

The general problems associated with water entering the Caloosahat chee Estuary include:

• Excess discharges from Lake Okeechobee a nd watershed runoff occurring mainly during the wet season;

• Insufficient flows to the Caloosahatch ee Estuary during the dry season; and

• Excess nutrient loads to the Caloosahatchee River and Estuary.

The following subsections focus on the ecological problems in the Caloosahatchee Estuary, identify the possible causes of the problems, and describe opportunities to improve conditions in the estuary.

3.2.1 Ecological Problems in the Caloosahatchee Estuary

The major ecological problems in the Caloosahat chee Estuary stem from altered hydrology and excess nutrient loading. The combination of an excess of freshwater during the wet season and a lack of discharge during the dr y season lead to exaggerated seas onal and short term fluctuations in salinity throughout the entire estuary. The fluc tuations in salinity in any one region of the estuary can exceed the physiologica l tolerance limits of the organisms that normally live there, causing stress and/or mortality (Cha mberlain and Doering, 1998 a, b).

Excess nutrient loading has been a concern since at least the 1980s , when the Florida Department of Environmental Regulation (FDER) determined that the Caloosahatchee Estuary had reached its nutrient loading limits. A series of algal bl ooms and massive accumulati ons of drift algae that
have occurred since 2000 is another indication of coastal eutrophication (Lapointe & Bedford, 2006).

This section focuses on submerged aquatic ve getation (SAV), oysters, and algal blooms. Seagrass and oysters are Valued Ecosystem Co mponents (VECs). VECs sustain an important ecological resource and/or water resource f unction by providing food, living space, refuge and foraging sites for other desirable species in th e estuary. The salinity tolerances and other environmental requirements of SAV and oysters ha ve been used to identify preferred ranges of freshwater inflows. Algal blooms are an indicator of eutrophication.Chapter 3

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3-15 3.2.1.1 Submerged Aquatic Vegetation

Beds of SAV are important to th e ecology of shallow estuarine a nd marine environments. These beds provide habitat for many benthic and pelagic organisms, function as nurseries for juveniles and other early life stages , stabilize sediments, improve water quality, and can form the basis of a detrital food web (Fonseca & Fisher, 1986; Carter , 1988; Killgore, 1989). Because of their importance, estuarine restoration initiatives often focus on SAV (Batiuk 1992). SAV are commonly monitored to gauge the health of estuarine systems (Tomasko, 1996) and their environmental requirements can form the ba sis for water quality goals (Dennison, 1993; Stevenson, 1993).

Tape grass ( Vallisneria americana) is the dominant submerged aqua tic vegetation in the upper Caloosahatchee Estuary and occurs in well-define d beds in shallow water (Doering et al., 2001, 2002). Vallisneria americana is an important habitat for a vari ety of freshwater and estuarine invertebrate and vertebrate spec ies, including some commercial ly and recreationally important fishes (Bortone & Turpin, 1999). Additionally, it can serve as a food source for the Florida manatee ( Trichechus manatus ). Shoal grass ( Halodule wrightii), turtle grass (Thalassia testudinum) , and manatee grass (Syringodium filiforme) are the most common higher salinity grasses in the Caloosahatchee Estuary. Argopectin species, the bay scallop, prefers shoal and turtle grass beds.

All species of SAV have a preferred and tole rable salinity range. The SAV management
measures include creation and restoration of we tlands, and incorporation of growth management techniques and initiatives that integrate enviro nmental objectives into ur ban growth planning. SAV respond unfavorably when salinity alterations fall outside of these ranges. Degraded water quality and physical alterations, su ch as construction of the Sani bel Causeway and the dredging of the Intracoastal Waterway, have also shown negative impacts to the seagrasses. The result has been a regional decrease of seagrass coverage (Chamberlain & Doering, 1998a). This decline negatively impacts the fish and invertebrate communities. Loss of seagrass also causes destabilization of sediments and a shift in pr imary productivity from benthic macrophytes to phytoplankton, both of which provide negative biof eedback to further affect seagrass beds (SFWMD, 2006). Further information can be found in the Research and Water Quality Monitoring Program in Appendix E

.

3.2.1.2 Oysters

The American Oyster ( Crassostrea virginica ), also known as the Eastern or Virginia Oyster, is a natural component of southern estuaries and ha s been documented to be abundant in these systems. In the Caloosahatchee Estuary, oysters have been identified as a VEC. They filter particles from the water column, provide habitat and play an important role in the food chain. Oysters require firm and stable substrate for at tachment; water flows adequate to provide food supplies of plankton and algae; oxy gen concentrations greater than three parts per million (ppm); and salinity ranges between 10 to 30 parts per t housand (ppt), with 14 to 28 ppt as optimal conditions. They can tolerate high salinity (40 ppt) , but are especially vuln erable to low salinity (~3-5 ppt) for very brief periods (Gunter & Geyer, 1955; Volety, 2003). Oysters are also very susceptible to parasitic diseases, which are more prevalent during pe riods of high salinity (greater than 25 ppt) a nd high temperatures.Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-16 Recent estimates (2003 to 2004) for the Caloosah atchee River suggest approximately 18.4 acres of oyster reefs. The Caloosahat chee River and Estuary (including San Carlos Bay that forms the estuary portion of the Caloosahatchee River) has an accommodation space of 62,644,983 square meters (m 2 ) (6264 hectares (ha) or 15,479.36 acres) with oyster reefs comprising 74,336 m 2 (7.43 ha or 18.37 acres). This area translates to 0.12 percent coverage of total surface ar ea available in the estuarine portion (Volety, 2003; RECOVER 2007) . Consequently, rest oration efforts are expected to improve the recruitment and survivor ship of the Eastern Oy ster by restoring oyster
beds in suitable habitat and main taining habitat function of oyster beds for fish, crabs, and birds.

3.2.1.3 Algal Blooms

Periodic blooms of algae have been reported with in the marine and freshwater portions of the Caloosahatchee Estuary. In many instances, th ese algal blooms are merely an aesthetic and odiferous nuisance. However, when bloom o ccurrences cause the a nnual average chlorophyll- a concentration within the water to exceed 11 micrograms per liter ( μ g/L), then FDEP Impaired Water Rule is violated (Rule 62-303.353, F.A.C.). These blooms can cause depressed dissolved oxygen (DO) below the state criteria, depending on the concentration of the bloom, spatial extent, and duration (Doering, et al. 2006).

In addition to the impact of a bloom on general water quality, certain algal species produce toxins that kill fish, invertebrates, bi rds and mammals. One such species is Karenia brevis, which can produce blooms that are toxic to the ma rine environment and are referred to as “red
tides.” Florida red tide blooms t ypically begin offshore in the Gulf of Mexico and move slowly with the prevailing ocean currents toward sout hwest Florida. As the bloom progresses, the density of red tide organisms increases to several million cells in each liter of sea water, and the affected area expands to many square miles. Other algal species, such as the freshwater cyanobacteria microcystis species, can enter th e estuary during freshwater inflow and cause harmful blooms, depending on environmental c onditions such as temperature, season, and nutrient availability.

Accumulations of drift algae (seaweed) constitut e another problem. The seaweed can smother seagrass beds and render beaches unusable for recreational purposes. While some recent studies have been conducted (LaPointe & Bedford, 2006), the causes of these massive accumulations are not yet fully understood and further investiga tions, funded by the City of Sanibel and Lee County, are underway.

Marine algal toxins, such as brevetoxin, bioa ccumulate and are magnified in the food chain, while anatoxins from freshwater cyanobacteria a ffect the nervous system . There have been
several documented cases in the field where blooms of Karenia brevis , a brevetoxin that produces neurotoxins, have killed both verteb rate and invertebrate species. At least 17 invertebrate species normally present in Tamp a Bay, Florida have been recorded as absent immediately after red tide incidents. Various species of bivalve shellfish, especially oysters, clams, and coquinas can accumulate so much toxin that they become toxic to both marine animals and humans (SFWMD, 2006).Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-17 3.2.2 Potential Causes

Beginning in the1890s, ecological degradation bega n in the Caloosahatchee River Watershed due to channelization, connection to Lake Okeechob ee, and construction of an extensive canal network. The potential causes of the ecological problems in the Caloosahatchee Estuary discussed above include excess water discharges from Lake Okeechobee re gulatory releases and the Caloosahatchee River Watershed, insufficient discharges from the Caloosahatchee Watershed, loss of shoreline habitat and functio n, and nutrient loading (USFWS, 1984). These potential causes and their relationship to the eco logical problems are discussed in the following
section.

3.2.2.1 Discharges from Lake Oke echobee Regulatory Releases and the Caloosahatchee
River Watershed

Construction of drainage systems in the Ca loosahatchee River Wate rshed to accommodate agriculture and urban development has resulted in a loss of storage. During the rainy season,
runoff occurs with a shorter dur ation at higher volumes and pe ak discharges. These high discharges can be exacerbated by regulatory di scharges from Lake Okeechobee sent to the Caloosahatchee Estuary through the C-43 Canal. These discharges have led to extreme and sudden low salinity conditions within the Caloosahatchee Estuary. For example, discharges to the Caloosahatchee Estuary exc eeding 2,800 cubic feet per second (cfs) at the S-79 Franklin
Lock and Dam have been determined to cause st ress to the estuary. Discharges greater than 4,500 cfs have been determined to be severe ly damaging. Although this CRWPP accounts for Lake Okeechobee regulatory releases, they are addr essed in the LOP2TP. This plan focuses on discharges from the Caloosahatchee River Watershed.

The current proposed frequency distribution of mean monthly inflows to the Caloosahatchee Estuary, from S-79 (estuary demand time series EST05), was chosen from several CERP model run options. This distribution be st achieves the range of flows from S-79 that are needed for meeting ecological and salinity targets. Table 3-1 (SFWMD, 2003b; Chamberlain, 2005)
identifies the current recommended frequency distributi on of average monthly freshwater inflow
from S-79 associated with EST 05, without contributions from tid al basins downstream of S-79.

Table 3-1. Current Recommended Fre quency Distribution (EST05) of Inflow from S-79 (without contributions from tidal basins downstream of S-79)

Discharge Range (cfs)
from S-79 Percent Distribution of
Flows from S-79
0 to 450 0%
450 to 500 42.8%
500 to 800 31.7%
800 to1500 19.2%
1500 to 2800 5.6%
2800 to 4500 0.7%

>4500 0%Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-18 Analysis of modeled flow data from S-79 en tering the Caloosahatchee Estuary during the 1970- 2005 period of record (432 months) has resulted in a useful snapshot of historic conditions. For example, the modeled mean monthly flows of existing conditions exceeded 2,800 cfs for 117 months (27 percent of the total months), and 37 of those 117 months exceeded 4,500 cfs. Even with implementation of all LOP2TP projects, it is projected that the mean monthly flows exceeding 2,800 cfs for this period of record woul d have occurred in 76 months, and of those, 21 months would have been above 4,500 cfs. The re sulting extreme low salin ity conditions stress oyster and seagrass communities and can ultimately lead to reduced populations and coverage.

3.2.2.2 Insufficient Flows from the Caloosahatchee River Watershed

Drainage, loss of storage in the watershed, and urban and agricultural demands for water have decreased dry season flows to the Caloosahatch ee Estuary. At times, discharge from the Caloosahatchee River to the downstream estuary ceases entirely and salt water intrudes upstream, with salinities at S-79 often exceeding 10 ppt. Th ese high salinities cause the mortality of brackish water organisms that ordinari ly live in this region of the estuary. During such dry periods, a flow of 450 cfs at S-79 is requi red to maintain salinity less than 10 ppt in the estuary upstream of Fort Myers (SFWMD, 2003a and b; Chamberlain & Doering, 2004; Chamberlain, 2005), which protects SAV and othe r organisms from salinity-induced stress and mortality. Based on the modeled mean monthly flows of existing conditions at S-79 during the 1970 to 2005 period of record ( 432 months), average flows of less than 450 cfs occurred in 189 months (44 percent).

3.2.2.3 Loss of Shoreline Habitat and Function

Mangrove habitat is the predominant contributor to the ecological functionality of shoreline habitat in the Caloosahatchee Estuary. Urbanizati on and shoreline development have resulted in the extensive loss of mangrove habitat along the estuary. Among the ecological functions carried out by mangroves are land formation (Dav is, 1940), sediment stabilization, and primary productivity, filtration of land runoff, absorption, and recharge floodwaters. The mangroves also serve as habitats and nurseries, providing food and cover for a multitude of native fish and wildlife (MacNae, 1968; Odum, 1 982; Harris, 1983; Dawes, 1998). These functions help to maintain water quality, recycle nu trients, and control erosion (Har ris, 1983). In south Florida, mangroves have been destroyed by dr edge-fill operations used to create real estate and by port and industrial facilities. Mangrove destruction results in a chain of reactions that affect estuarine and offshore production. In the Tampa Bay estuar ine system, which is similar in structure and function to the Caloosahatchee Estuary, 44 percen t of the mangrove and sa lt marsh land has been
lost due to construction and re sultant turbidity from runoff and pollution (Lewis & Estevez, 1988). This loss in the Tampa Bay Estuary has been linked to declines in fin fish and commercial shrimping in the re gion (Dawes, 1998; SFWMD, 2006).

3.2.2.4 Increased Nutrients and Contaminants

The amount of nutrients entering the Caloosahatchee River has im portant effects on the water quality of the system. Organi sms use these nutrients , but excessive amount s may have negative impacts. Algal blooms and epiphyte growth may cause decreased water clarity and block sunlight for aquatic plants (Day, 1989). As algae die, organic decomposition depletes theChapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-19 oxygen in the water (LaRose & McPherson, 1 983; Drew & Schomer, 1984; Day, 1989). Low levels of DO can have negative effects on fi sh and other aquatic organisms (Heyl, 1998). Eutrophication may also result in an increase in red tide blooms.

Over-fertilization of estuaries with nutrients fr om urban and agricultural sources is both a local problem for the Caloosahatchee Estuary and a pr oblem for most estuaries worldwide. In the 1980s, the FDER determined that the Caloosahat chee Estuary had reache d its nutrient loading limits based on high chlorophyll- a (phytoplankton biomass) and low DO concentrations (DeGrove, 1981). More recently, blue-green alg ae blooms, red tides, and massive accumulation of drift algae (Lapointe & Bedford, 2006) have been taken as an indication that nutrient loads to the Caloosahatchee Estuary are too high and th at the system suffers from eutrophication.

3.3 Planning Objectives

The problems described in Section 3.2 directly lead to the objectives discussed in sections below. Measures to reduce discharges and nutrien t loading from Lake Okeechobee through the
Caloosahatchee River are addressed in the LOP2TP. Performance measures used to evaluate the performance of the alternative pl ans are described in Section 3.5.

3.3.1 Caloosahatchee Estuary Salinity Envelope Objective

The objectives of the Sali nity Envelope are to:

• Manage Lake Okeechobee and watershed discha rges within the propos ed flow range (450 to 2,800 cfs, as outlined in Section 3.2.2.1) to maintain salinity range s for the estuary.

3.3.2 Caloosahatchee River Watershe d Water Quality Objectives

The water quality objectives of the Ca loosahatchee River Watershed are to:

• Meet TMDLs; and

• Reduce pollutant loads by improving manage ment of pollutant sources throughout the
watershed.

3.3.3 Caloosahatchee River Watershed Water Quantity Objective

The water quantity objectives of the Caloosahatchee River Watershed are to:

• Manage the frequency and duration of excess freshwater discharges to the Caloosahatchee Estuary.

3.4 Planning Constraints

3.4.1 Water Supply and Flood Protection

The NEEPP legislation requires that water-relate d needs of the region, including water supply and flood protection, will continue to be met. Recommendations contained in the CRWPP must continue to meet water supply and fl ood protection needs for the watershed.Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-20 3.4.2 Minimum Flows and Levels

Minimum flows and levels are established to identify where further w ithdrawals would cause significant harm to the water re sources, or to the eco logy of the area. The Minimum Flows and
Levels Rule for the Caloosahatchee River at S- 79, set in Rule 40E-8.221 F.A.C., was established in 2001, based on scientific and peer reviewed technical documentatio n (SFWMD, 2000). The
rule states that:

• A minimum mean monthly flow of 300 cfs is necessary to main tain sufficient salinities at S-79 in order to prevent a minimum flows a nd levels exceedance. A minimum flows and levels exceedance occurs during a 365-day pe riod, when (a) a 30-day average salinity concentration exceeds 10 ppt at the Fort Myer s salinity station (measu red at 20 percent of the total river depth from the water surf ace at a location of latitude 263907.260, longitude 815209.296), or (b) there is a single average sa linity exceedance concentration of 20 ppt at the Fort Myers salinity station. Exceedance of either subsection (a) or subsection (b), for two consecutive years is a violation of the Minimum Flows and Levels Rule.

• The minimum flow criteria for the Caloosah atchee River in Rule 40E-8.221, F.A.C., shall be reviewed within one year of the effective date of the rule and amended, as necessary,
based on the best available information.

As per the review requirement above, the rule was reviewed and a technical update document (SFWMD, 2003a) was produced. The document repor ted that 300 cfs at S- 79 was insufficient to achieve the 10 ppt minimum flows and levels salinity criteria (a and b above) during periods of below average rainfall, when tributaries downs tream of S-79 were contributing below average inflow. Subsequent analysis and document ation (including SFWM D, 2003b; Chamberlain & Doering, 2004) estimated that about 450 cfs is re quired from S-79 to ensu re the minimum flows and levels salinity criteria is achieved under most downstr eam tidal flow conditions.

CRWPP recommendations cannot reduce the ability to meet the minimum flows and levels salinity criteria.

3.4.3 Lake Okeechobee Proposed Target Minimum Water Level Condition

The proposed target minimum water level condition for Lake Okeechobee allows for only one occurrence over a six-year period when water le vels drop below 11 feet NGVD for more than 80 days. CRWPP recommendations should not reduce the ability to meet this proposed minimum
water level condition.

3.4.4 Lake Okeechobee Service Area Irrigation Demand

Another CRWPP planning constraint is to ensure that the plan does not adversely affect the Lake Okeechobee Service Area (LOSA) water supply demands.Chapter 3

Caloosahatchee River Watershed Protection Plan January 2009
3-21 3.4.5 State Water Quality Standards

Recommendations contained in th e CRWPP must protect, mainta in or, as necessary, improve water quality within the watershed to be consiste nt with applicable water quality standards.

3.5 Performance Measures and Indicators

Alternatives were specifically form ulated to meet the performance measure targets to the greatest extent possible. The alternative plans were then compared to the perfor mance measure targets to determine their efficiency and eff ectiveness in achieving CRWPP objectives.

Performance indicators are planni ng constraints or other parame ters of interest that the alternative plans could directly or indirectly affect. Alternat ive plans were compared to the performance indicators to ensure planning constraints were met and to determine if ancillary impacts on other parameters would oc cur and, if so, to what extent.

Research results repo rted by Chamberlain et al. 1995, Doering et al. 1999 and 2001, and
Kraemer et al. 1999 were used to determin e optimum salinity (env elope) for SAV in the Caloosahatchee Estuary that also protect and pr omote benthic invertebra tes, ichthyoplankton, and zooplankton (Chamberlain & Doering, 1998a; Doering, 2002). A combination of salinity models developed for the estuary, along with watershed modeling efforts, (SFWMD, 2003a) were used to define the optimum distribution of average monthly flows from S-79 (EST05). The defined optimum distributi on provides the desirable salinity range in the geographic locations of key estuarine biota and achieves the minimum fl ows and levels salinity criteria (see Section 3.2.2.1).

Consistent with EST05, a favorable maximum m onthly flow of 2,800 cfs at S-79 was identified, below which suitable salinity conditions exist within the estuary for the development of important benthic communities (e.g., oysters a nd seagrass). Mean monthly flows above 2,800 cfs that approach 4,500 cfs can result in freshw ater conditions throug hout the estuary, causing severe impacts to estuarine biota, including se agrass upstream and downstream of Shell Point. Oysters also are affected acutely by high flows. Volety et al. (2003) reported salinities of five ppt or lower will result in > 95 percent mortality of juvenile oysters. High juvenile mortality can occur when exposed to this salinity for just a w eek. Experimental results indicate that adults are
able to tolerate salinities as low as five ppt, but cannot tolerate salinities lower than three ppt, which can occur upstream of Shell Point during ve ry high flow events. On the other extreme, average monthly flows below 450 cfs can produce high salinity conditions for tape grass upstream of Fort Myers and increase the prob ability of Minimum Flows and Levels Rule exceedance and violations. Mean monthly flow s that fall well below 450 cfs for consecutive months that extend into late spring and early su mmer also result in increased oyster mortality.

Table 3-2 describes the relationships between the problems, objectives, performance measures and performance indicators for this project. Water resources problems for the study area are described in Section 3.2 of this document. Identification of the water resources problems led to establishment of the project objectives, which are described in Section 3.3. The performance
measures and indicators discussed above we re developed based on these problems and objectives.Chapter 3Caloosahatchee River Watershed Protection Plan January 20093-22Table 3-2.Caloosahatchee River Watershed Protection Plan –Problems, Objectives, Performance Measures and Indicators, and TargetsProblemObjectivePerformance Measure/IndicatorTargetExcess freshwaterdischarges from LakeOkeechobee regulatorydischarge events and localwatershed runoff leadingto an undesirable lowsalinity conditionManage the frequency andduration of excess freshwaterdischarges to the CaloosahatcheeEstuary from the CaloosahatcheeRiver WatershedThe number of times discharge from theCaloosahatchee River Watershed (CRW) exceeds theHigh Discharge Criteria of:1.Mean monthly flows from the CRW ofgreater than 2,800 cfs (14-day movingaverage)2.Mean monthly flows from the CRW ofgreater than 4,500 cfs1.Limit mean monthly flows greater than 2,800cfs to 3 months or less over a 432-monthperiod2.Limit mean monthly flows greater than 4,500cfs to zero months over a 432-month periodExcess nutrient loadsfrom surface waterdischarges leading toalgae blooms and fishkillsMaximize N and P loadreductions to meet anticipatedTMDLsMaximize load reduction and compare againstTMDLs as appropriateMeet TMDLs as established by FDEPIncreases in undesirablehigh salinity conditions,due to insufficient surfacewater flows fromCaloosahatchee RiverWatershed, leading tounfavorable conditionsfor estuarine organismsManage watershed discharges tomaintain a salinity rangeconducive to the ecological healthof the Caloosahatchee Estuarythat includes maintaining salinity< 35 ppt for oysters at Shell Pointand upstream and salinity < 10ppt at Fort Myers location(Minimum Flows and LevelsRule)Number of months that salinity envelope in theCaloosahatchee Estuary is not met, due to little or noflow from watershed based on the low flow target of450 cfsUse the Target Flow Index (TFI) based on EST05flow time series (TFI assesses the level of divergenceof each alternative from the desired flow distributiondefined by EST05)Limit average monthly flows of below 450 cfs fromOctober to JulyTFI value of zero signifies perfect match to EST05.Progressively more negative index values areassociated with flow deviationsLake Okeechobee waterlevels falling belowecologically desirablelevelsMaintain Lake Okeechobee waterlevels within a desirable range forecological needsNumber of occurrences that the Lake Okeechobeeminimum water level condition was not met duringthe 432-month Period of RecordLimit to no more than oneoccurrence every six yearswhen Lake Okeechobee water levels fall below 11feet NGVD for more than 80 daysWater supply cutbacksthat affect the ability tomeetexisting and futuremunicipal, industrial, andagricultural water supplyneeds in the regionEnsure plan does not adverselyaffect the Lake OkeechobeeService Area water supplydemandsEvaluate the LOSA demand cutback volumes duringseven drought events and annual percentage of watersupply demands not met during the period of recordMaintain or reduce the percent of LOSA cutbacksand the annual water supply demands not met

### CHAPTER 4

INTERAGENCY COORDINATION AND PUBLIC INVOLVEMENTChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-i TABLE OF CONTENTS

4.0 INTERAGENCY COORDINATION & PUBLIC INVOLVEMENT............................ 4-1
4.1 Interagency Coordination.............................................................................................4-1
4.2 Public Involvement and Stak eholder Notification.......................................................4-7
4.3 Public Comments......................................................................................................... 4-7

LIST OF TABLES

4-1 Summary of CRWPP Inte ragency Coordination ............................................................. 4-2Chapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-1 4.0 INTERAGENCY COORDINATION & PUBLIC INVOLVEMENT

A concerted effort was made during the Cal oosahatchee River Wate rshed Protection Plan (CRWPP) planning process to involve all appropri ate and relevant agenci es and keep the public and stakeholders informed about the project. A public outreach initiative was developed and implemented throughout the planning process. Sp ecific objectives of this initiative included the following:

• Develop and implement an approach that would reach all stakeholders;

• Integrate the public outreach efforts with al l other aspects of the planning process; and

• Take advantage of other ongoi ng public efforts being condu cted by the South Florida Water Management District (SFWMD) and co llaborating agencies as part of other Caloosahatchee Estuary restoration programs.

The CRWPP public outreach initiative focu sed on the four following activities:

• Interagency coordination;

• Public involvement and stak eholder notification; and

• Internal management and communication.

4.1 Interagency Coordination

The legislation authorizing the Northern Evergl ades and Estuaries Protection Program (NEEPP) required SFWMD to work in co llaboration with coordinating agencies, such as Florida Department of Environmental Protection (FDEP) and Florida Department of Agriculture and Consumer Services (FDACS), to develop the CRWPP.

Input from other agencies was solicited through informal intera ction and during stakeholder and interagency meetings that were periodically held such as:

• The CRWPP Working Team;

• The Water Resources Advisory Commission (WRAC);

• The WRAC Lake Okeechobee Committee;

• Ten County Coalition Meeting; and

• The Northern Everglades Interagency Meetings.

Table 4-1 identifies the key meetings or briefi ngs at which input on CRWPP planning was actively sought.Chapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-2 Table 4-1. Summary of CRWPP Interagency Coordination

Meeting ID Meeting Date Meet ing Location M eeting Agenda Northern Everglades Interagency Meeting September 5, 2007 Okeechobee, FL • Northern Everglades Update WRAC Meeting September 6, 2007 Naples, FL • Northern Everglades
and Estuaries Protection Program Update Ten County Coalition Meeting September 14, 2007 Okeechobee, FL • Northern Everglades Briefing Northern Everglades Interagency Meeting October 17, 2007 Okeechobee, FL • Northern Everglades Update CRWPP Working Team Meeting October 19, 2007 Fort Myers, FL • Briefing on legislation

• Introduced key working

team members

• Formed the plan

schedule

• Opened for public

comments Lake Okeechobee WRAC Meeting October 31, 2007 Okeechobee, FL • Northern Everglades Update WRAC Meeting November 8, 2007 West Palm Beach, FL • Northern Everglades
and Estuaries Protection Program Update Research and Water Quality Monitoring Program Working Team Meeting November 9, 2007 Fort Myers, FL • Briefing on plan status
and schedule

• Introduced key working

team members

• Opened for public

comments CRWPP Working Team Meeting November 20, 2007 Fort Myers, FL • Briefing on plan status
and schedule

• Coordinating agencies

update

• Opened for public

comments Northern Everglades Interagency Meeting November 27, 2007 Okeechobee, FL • Northern Everglades Update
Lake Okeechobee WRAC Meeting November 28, 2007 Clewiston, FL • Northern Everglades Update Ten County Coalition Meeting November 30, 2007 Okeechobee, FL • Northern Everglades Update Walt Disney World Environmental Expo Day December 3, 2007 Orlando, FL • Northern Everglades display Joint Meeting of WRAC/South Florida Ecosystem Restoration
Task Force December 5, 2007 Miami, FL • Northern Everglades Update

Research and Water Quality Monitoring Program Working Team Meeting December 7, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments Stetson University Decembe r 8, 2007 Deland, FL • Northern Everglades Briefing CRWPP Working Team December 20 , 2007 Fort Myers, FL • Briefing on plan statusChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-3 Meeting ID Meeting Date Meet ing Location M eeting Agenda Meeting and schedule

• Coordinating agencies

update

• Opened for public

comments Combined Lake Okeechobee
Committee and WRAC January 3, 2008 West Palm Beach, FL • Lake Okeechobee Phase
II Technical Plan and
River Watershed
Protection Plans Briefing Research and Water Quality Monitoring Program Working Team Meeting January 23, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments Northern Everglades Interagency Meeting January 29, 2008 Okeechobee, FL • Northern Everglades
and Estuaries Protection Program Update
Lake Okeechobee WRAC Meeting January 30, 2008 Fort Myers, FL • Northern Everglades:
River Watershed Protection Plans Update Research and Water Quality Monitoring Program Ad-Hoc Group Meeting February 7, 2008 Conference Call • Research and Water Quality Monitoring Plan Objectives Research and Water Quality Monitoring Program Working Team Meeting February 20, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments CRWPP Working Team Meeting February 20, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Coordinating agencies

update

• Opened for public

comments Lake Okeechobee WRAC Meeting February 27, 2008 Stuart, FL • Northern Everglades:
River Watershed Protection Plans Update South Florida Ecosystem
Restoration Task Force February 28, 2008 West Palm Beach, FL • Northern Everglades
and Estuaries Protection Program Update Ten County Coalition Meeting February 29, 2008 Okeechobee, FL • Northern Everglades
and Estuaries Protection Program Update Research and Water Quality Monitoring Program Ad-Hoc Group Meeting March 4, 2008 Fort Myers, FL • Evaluation on the existing water quality monitoring efforts.
Environmental Preservation
Committee March 12, 2008 Tallahassee, FL • Northern Everglades
and Estuaries Protection Program Briefing Research and Water Quality Monitoring Program Working Team Meeting March 18, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments Lee County March 18, 2008 Fort Myers, FL • Discussion on Regulatory ApproachesChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-4 Meeting ID Meeting Date Meet ing Location M eeting Agenda
to Management
Measures Lee County Meeting March 19, 2008 Fort Myers (Conference Call) • Caloosahatchee River
Watershed Protection
Plan Discussion
Lake Okeechobee WRAC Meeting March 26, 2008 Okeechobee, FL ● Lake Okeechobee Phase
II Technical Plan and
River Watershed Protection Update Northern Everglades Interagency Meeting March 27, 2008 Stuart, FL • Northern Everglades
and Estuaries Protection Program Update City of Sanibel April 3, 2008 Fort Myers, FL • Discussion of Management Measures SFWMD Governing Board Workshop April 9, 2008 Okeechobee, FL • Northern Everglades
and Estuaries Protection Program Update Research and Water Quality Monitoring Program Working Team Meeting April 15, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments Research and WQ Monitoring Program Ad-Hoc Group Meeting April 15, 2008 Fort Myers, FL • Evaluation of existing aquatic habitat monitoring efforts. CRWPP Working Team Meeting April 16, 2008 Fort Myers, FL • Briefing on plan status
and schedule and coordinating agencies update

• Opened for public

comments Meeting with Florida Department of Community Affairs Secretary Pelham and
staff April 28, 2008 NA (Conference Call) • Northern Everglades
and Estuaries Protection Program Coordination Meeting
Lake Okeechobee WRAC Meeting April 30, 2008 Clewiston, FL • Northern Everglades:
River Watershed Protection Plans Update Okeechobee Board of Realtors May 21, 2008 Okeechobee, FL • Northern Everglades Update Research and Water Quality Monitoring Program Working Team Meeting May 20, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments CRWPP Working Team Meeting May 21, 2008 Fort Myers, FL • Briefing on plan status
and schedule and coordinating agencies update

• Opened for public

comments Lake Okeechobee WRAC Meeting May 28, 2008 West Palm Beach, FL • Northern Everglades:
River Watershed Protection Plans Update Ten County Coalition Meeting May 30, 2008 Okeechobee, FL • Northern Everglades
and Estuaries ProtectionChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-5 Meeting ID Meeting Date Meet ing Location M eeting Agenda Program Update Northern Everglades Interagency Meeting June 4, 2008 Okeechobee, FL • Northern Everglades Update
Okeechobee Economic Council Meeting June 4, 2008 Okeechobee, FL • Northern Everglades Update WRAC Meeting June 5, 2008 Hollywood, FL • Northern Everglades:
River Watershed Protection Plans Update

• Analysis of Impacts of

Lake Regulation
Schedules and its
Relation to Northern Everglades Research and Water Quality Monitoring Program Working Team Meeting June 17, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Opened for public

comments Lake Okeechobee WRAC Meeting June 25, 2008 Fort Myers, FL • Northern Everglades:
River Watershed Protection Plans Update Highlands County Conservation Connection Day June 25, 2008 Sebring, FL • Northern Everglades display CRWPP Working Team Meeting June 27, 2008 Fort Myers, FL • Briefing on plan status
and schedule and coordinating agencies update

• Opened for public

comments WRAC Meeting July 3, 2008 West Palm Beach, FL • Northern Everglades:
River Watershed Protection Plans Update Martin County Staff Meeting July 10, 2008 Stuart, FL • Northern Everglades Update Palm Beach Community College July 11, 2008 Palm Beach Gardens, FL • Northern Everglades
Presentation Sanibel Mayor Nick Denham July 21, 2008 Fort Myers, FL • Northern Everglades Projects CRWPP Working Team Meeting July 21, 2008 Fort Myers, FL • Briefing on plan status
and schedule and coordinating agencies update

• Opened for public

comments Lake Okeechobee WRAC Meeting July 24, 2008 Stuart, FL • Northern Everglades:
River Watershed Protection Plans Update CRWPP Working Team Meeting August 1, 2008 Fort Myers, FL • Briefing on plan status
and schedule

• Coordinating agencies

update

• Opened for public

comments Rivers Coalition August 28, 2008 Stuart, FL • Northern Everglades
PresentationChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-6 Meeting ID Meeting Date Meet ing Location M eeting Agenda Ten County Coalition Meeting August 29, 2008 Okeechobee, FL • Northern Everglades
and Estuaries Protection Program Update SFWMD Governing Board Workshop September 10, 2008 West Palm Beach, FL • Northern Everglades:
River Watershed Protection Plans Update
Lake Okeechobee WRAC and WRAC Combined Meeting September 16, 2008 West Palm Beach, FL • Northern Everglades:
River Watershed Protection Plans Update Northern Everglades Interagency Meeting October 2, 2008 Okeechobee, FL • Northern Everglades
and Estuaries Protection
Plan Representative Ralph Poppell October 3, 2008 Titusville, FL • Northern Everglades Update Glades County Commission Meeting October 14, 2008 Moore Haven, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan
Southwest Florida Watershed
Council October 14, 2008 Fort Myers, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan
Florida’s Heartland Rural Economic Development Initiative Board Meeting October 20, 2008 Sebring, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan Public Workshop for
Caloosahatchee River
Watershed Protection Plan October 27, 2008 Fort Myers, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan Lee County Commission Meeting October 28, 2008 Fort Myers, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan Hendry County Commission Meeting October 28, 2008 La Belle, Florida • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan
Lake Okeechobee WRAC Meeting October 29, 2008 West Palm Beach, FL • Northern Everglades:
River Watershed Protection Plans Update Rivers Coalition November 6, 2008 Stuart, FL • Northern Everglades
and Estuaries Protection Plan Update Southwest Florida Regional Planning Council Meeting November 20, 2008 Fort Myers, FL • Overview of the draft
Caloosahatchee River
Watershed Protection
Plan SFWMD Governing Board Meeting December 15, 2008 West Palm Beach, FL • Northern Everglades
River Watershed
Protection Plans: Public
Comments and Final
Plan Lake Okeechobee WRAC and December 3, 2008 Key Largo, FL • Northern EvergladesChapter 4

Caloosahatchee River Watershed Protection Plan January 2009
4-7 Meeting ID Meeting Date Meet ing Location M eeting Agenda WRAC Combined Meeting River Watershed
Protection Plans: Public
Comments and Final
Plan Ten County Coalition Meeting December 5, 2008 Okeechobee, FL • Northern Everglades
River Watershed
Protection Plans: Public
Comments and Final
Plan

4.2 Public Involvement and Stakeholder Notification

The public outreach effort for the CRWPP pla nning process sought to achieve the following goals:

• Increase public awareness of the overall goals and objectives of the NEEPP;

• Inform the public and receive input regardi ng the project goals, ob jectives, progress, issues and findings;

• Involve stakeholders, agencies , and other interest ed groups and indivi duals during plan development, to ensure that public values regarding the project were fully considered;

• Reduce potential conflict among interested and affected parties by building consensus solutions to emerging issues;

• Improve the substantive quality of project -level decisions, as a result of public participation; and

• Increase public trust in SFWMD and the other agencies involved in the planning process.

4.3 Public Comments

The Draft CRWPP was released for public co mment on October 1, 2008, with a public comment period until Oct 31, 2008. The public, stakeholders , and agencies were invited to review and provide comments on the Draf t CRWPP. 114 comments were received during the public comment period. The public comments were cons idered during the finalization of the CRWPP and formal response for each comment was provided in the Final Plan (see Appendix H ).

### CHAPTER 5

TOTAL MAXIMUM DAILY LOADSChapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-i TABLE OF CONTENTS

5.0 TOTAL MAXIMUM DAILY LOADS........................................................................... 5-1
5.1 Background.................................................................................................................. 5-1
5.1.1 Clean Water Act and Florida Wa tershed Restoration Act.....................................5-1
5.1.2 Total Maximum Daily Load Development Timelines...........................................5-2
5.1.3 Total Maximum Daily Load Process ..................................................................... 5-2
5.1.4 Watershed Approach..............................................................................................5-2
5.2 Development of Total Maximum Daily Load s for Caloosahatchee River Basin ........5-4
5.2.1 Impaired Water Body Iden tification Numbers ......................................................5-4
5.2.2 Modeling Efforts....................................................................................................5-6
5.2.2.1 Hydrological Simulation Program—FORTRAN ...........................................5-7
5.2.2.2 Environmental Fluid Dynamics Code ............................................................5-7
5.3 Development of Total Maximum Daily Lo ads for Tidal Caloosahatchee Basin.........5-8
5.4 Timetable for Total Maximum Daily Load Completion..............................................5-9
5.5 Basin Management Action Plans...............................................................................5-10

LIST OF TABLES

5-1 Basin Groups and Florida Department of Environmental Protection Districts ............... 5-3 5-2 Nutrient and DO Impaired Waterbodies for Caloosahatchee River Basin ...................... 5-6
5-3 Caloosahatchee River Basin Total Maximum Daily Load Schedule............................... 5-9

LIST OF FIGURES

5-1 Watershed Basin Rotati on Groups and Schedule ............................................................ 5-3 5-2 Caloosahatchee River Basin Boundary............................................................................ 5-5 5-3 Impaired Waterbodies within the Caloosahatchee River Basin....................................... 5-5
5-4 EFDC Fine and Coarse-G rain Model Comparison.......................................................... 5-8Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-1 5.0 TOTAL MAXIMUM DAILY LOADS

5.1 Background

The Northern Everglades and Estuaries Pr otection Program (NEE PP) in Section 373.4595, Florida Statutes (F.S.) requires the Caloosah atchee River Water Protection Plan (CRWPP) to contain an implementation schedule for pollutant load reductions consis tent with any adopted Total Maximum Daily Loads (TMDLs) and in comp liance with applicable state water quality standards. The Florida Department of Envi ronmental Protection (FDEP) was developing
TMDLs for the Caloosahatchee River Watershed during the formulation of the CRWPP. This chapter summarizes the TMDL process and the status of the Caloosahatchee River Watershed TMDL development as of middle to late 2008. Detailed information on TMDLs in the Caloosahatchee River Watershed will be provided in FDEP’s TMDL Report Nutrient and Dissolved Oxygen TMDL for the Caloosahatchee River Basin

.

5.1.1 Clean Water Act and Florida Watershed Restoration Act

A TMDL is the maximum loading of a particular po llutant that can be discharged into a surface water and still meets its designated uses and applicable water quality standards. TMDLs provide important water quality restoration goals that will guide re storation activities.

The TMDL requirements were originally promulga ted as a part of the Federal Pollution Control Act of 1972 and were later expanded by the Clean Water Act (CWA) of 1977 and the Water Quality Act of 1987. The law requires states to de fine state-specific water quality standards for various designated uses and to id entify waterbodies for which the ambient water quality has been
determined not to meet established standard s (Subsection 303(d)). Waterbodies that do not achieve such water quality standards as a result of human-induced conditions are considered impaired. An updated list of impaired waterbodie s must be presented by the state to the U.S. Environmental Protection Agency (USEPA) every two years and must designate which of the listed impaired waterbodies will requir e implementation of the TMDL process.

In Florida, a TMDL study is required when a water segment is determined to be impaired. This process has been defined by the Florida Waters hed Restoration Act (FWRA) in Section 403.067, F.S. Regulations have been promulgated under the Impaired Surface Waters Rule Chapter 62- 303, Florida Administrative Code (F.A.C.). The rule defines methods to identify water segments requiring a TMDL.

The two-step process for the listing of impaired waters is based on the FWRA. The first step involves developing the initial “planning list” that names potent ially impaired waters based on existing impairment-related data. The second step involves developing a focused list of “verified” impaired waters based on additional data. The list of waters for which impairments have been verified using the methodology in the Im paired Waters Rule is referred to as the
verified list. This “v erified list” is adopted by the FDEP Secretary and constitutes the required 303(d) list. FDEP has devel oped these lists since 1992, and Fl orida’s 1998 303(d) list included 571 waterbodies located throughout the state.Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-2 5.1.2 Total Maximum Daily Load Development Timelines

The schedule for USEPA's TMDL development is done in accordance with a Consent Decree entered in the case styled National Wildlife Federation v. Browner, Case No. 98-356-CIVStafford (N.D. Fla.) ("Consent Decree"). The C onsent Decree sets forth a timeline for USEPA to adopt TMDLs for those impaired waters list ed on Florida 1998 Section 303(d) list. FDEP promulgates TMDLs pursuant to the FWRA in Section 403.067, Florida Statutes. The FWRA stated that all previous Florida 303(d) lists of impairments were for planning purposes only and directed FDEP to develop, and to adopt by ru le, a new science-based methodology to identify impaired waters. After a l ong rulemaking process, the Envi ronmental Regulation Commission adopted the new methodology as Chap ter 62-303, F.A.C. (Impaired Waters Rule), in April 2001 and modified it in 2006 and again in 2007.

5.1.3 Total Maximum Daily Load Process

In Florida, the TMDL process is multi-phased and includes the identifi cation, the verification, and the listing of impaired waters, followed by the development and implementation of the TMDL. Below are the phases of Florida’s TMDL process:

1. Preliminary data compilation and assessment
2. Strategic monitoring and assessment to verify water quality parameters
3. Development and adoption of TMDL
4. Development of Basin Management Ac tion Plan (BMAP) and allocations
5. Implementation of BMAP to meet TMDL and monitoring of results

5.1.4 Watershed Approach

In order to address pollutants in the state’s waterbodies, FDEP has adopted a watershed-based management approach, which is implemented using a cyclical management process that rotates through the state’s 52 major hydrolo gic basins in five groups over a five-year cycle (FDEP Basin 411, 2008). Each of the FDEP Districts is divi ded into five geographi cally based groups of watersheds, as broken down in Table 5-1

. Figure 5-1 illustrates the basin groups, as well as the rotation schedule for each group.Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-3 Table 5-1. Basin Groups and FDEP Districts

FDEP
District Group 1
Basins Group 2
Basins Group 3 Basins Group 4
Basins Group 5
Basins

Northwest OchlockoneeSt. Marks ApalachicolaChipola ChoctawhatcheeSt. Andrews Bay Pensacola Bay Perdido Bay

Northeast Suwannee Lower St. Johns

- Nassau-St. Marys Upper East Coast

Central Ocklawaha Middle St. Johns Upper St. Johns Kissimmee Indian River Lagoon

Southwest Tampa Bay Tampa Bay
Tributaries Sarasota BayPeace-Myakka Withlacoochee Springs Coast

South Everglades West
Coast Charlotte Harbor Caloosahatchee Fisheating Creek Florida Keys

Southeast Lake
Okeechobee St. LucieLoxahatchee Lake Worth Lagoon-Palm
Beach Coast Southeast CoastBiscayne Bay Everglades

Figure 5-1. Watershed Basin Rotation Groups and ScheduleChapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-4 5.2 Development of Total Maximum Daily Loads for Caloosahatchee River Basin

Florida’s impaired waters assessment process divides waters into segments, each of which is assigned a unique waterbody identification (WBI D) number. The Caloosahatchee River Basin had eight WBIDs included on Flor ida’s list of impaired wate rs (1998 303(d)) for various pollutants including fecal coliform bacteria, nutrients (chlorophyll- a ), and dissolved oxygen (DO). Figure 5-2 shows the Caloosahatchee River Basin boundary, and Figure 5-3 depicts the
WBIDs within the Caloosahatchee River Basin. Recent information relative to the hydrology within the basin has resulted in proposed chan ges to some of the WBID boundaries. The map
shown in Figure 5-3 incorporates recent changes to the WB IDs in the Tidal Caloosahatchee area
and is consistent with the current WBID vers ion, Run 33, which was completed in July 2008.

In September 2005, FDEP issued a fecal coliform TMDL for Ninemile Canal, WBID 3237D. The TMDL document assessed potential sources of fecal coliform in th e watershed, quantified the fecal coliform load allocation appropriate for Ninemile Canal, and outlined the next step in water quality protection after the TM DL had been adopted by rule.

The nutrient (chlorophyll- a ) and DO TMDL for the Tidal Caloos ahatchee River, downstream of the U.S. Army Corps of Engineers (USACE) W.P. Franklin Lock (S-79), is currently being developed by FDEP. Originally, these TMDLs we re scheduled to be completed by September 30, 2010. However, the NEEPP fast-tracked these TMDLs (Section 373.4595, F.S.). The legislation states that FDEP “ is directed to expedite th e development and adoption of total maximum daily loads for the Caloosahatchee River and estuary... [and to] no later than December 31, 2008, propose for final agency action, to tal maximum daily loads for nutrients in the tidal portions of the Ca loosahatchee River and estuary .”

5.2.1 Impaired Water Body Identification Numbers

Figure 5-3 and Table 5-2 display the WBIDs in the Tidal Caloosahatchee Basin determined to be impaired for either DO or nutrients (chlorophyll- a ) based on water qual ity data from 1996 to 2003 (Cycle 1). As a result of the NEEPP legisl ation, draft TMDLs for the main stem of the Tidal Caloosahatchee River will be completed by December 31, 2008. The TMDLs for the Tidal Caloosahatchee tributary WBIDs that are currently impaired are due to be completed by 2010.Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-5 Figure 5-2. Caloosahatchee River Basin Boundary

Figure 5-3. Impaired Waterbodies within the Caloosahatchee River BasinChapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-6 Table 5-2. Nutrient and DO Impaired Waterbodi es for Caloosahatchee River Basin

WBID Waterbody Segment Waterbody Type Waterbody
Class 1 Parameters
Assessed Using the Impaired
Waters Rule 2

3240A Tidal Caloosahatchee Estuary 3M Dissolved Oxygen

3240A Tidal Caloosahatchee Estuary 3M Nutrients (Chlorophyll- a )

3240B Tidal Caloosahatchee Estuary 3M Dissolved Oxygen

3240B Tidal Caloosahatchee Estuary 3M Nutrients (Chlorophyll- a )

3240C Tidal Caloosahatchee Stream 3F Dissolved Oxygen

3240C Tidal Caloosahatchee Stream 3F Nutrients (Chlorophyll- a )

3240E 1 Hancock Creek Estuary 3M Dissolved Oxygen

3240E 1 Hancock Creek Estuary 3M Nutrients (Chlorophyll- a )

3240L Gilchrest Drain - Powel Stream 3F Dissolved Oxygen

3240L Gilchrest Drain - Powel Stream 3F Nutrients (Chlorophyll- a )

3240M Stroud Creek Stream 3F Nutrients (Chlorophyll- a )

3240Q Popash Creek Stream 3F Dissolved Oxygen

3240Q Popash Creek Stream 3F Nutrients (Chlorophyll- a )

1 The 3 stands for Class III. The designate d uses of Class III waters are for recr eation, propagation, and maintenance of

healthy, well-balanced populations of fi sh and wildlife. The M stands for ma rine, and the F sta nds for freshwater.

2 Based on Cycle 1 Assessment (1 996 to 2003 water quality data).

3 Based on Cycle 1 Assessment (J anuary 1, 1997 to June 30, 2004 water quality data).

5.2.2 Modeling Efforts

In order to establish nutrient targets [i.e., TMDLs for total n itrogen (TN) and total phosphorus (TP)] that correspond with other hydrologic a nd ecological goals (e.g., salinity envelopes), modeling efforts are being undertaken to better understand how the river sy stem interacts with the Gulf of Mexico. Modeling efforts are also intended to determine how the numerous WBIDs
are interconnected within a watershed perspectiv e. The modeling effort to support the development of TMDLs for the Tidal Caloosahat chee River involves the development of linked watershed and receiving waterbody numerical models, including the Hydrological Simulation Program—Fortran (HSPF) and the Environmental Fl uid Dynamics Code (EFDC). These models are linked together to simulate the hydrologic a nd water quality functions of the Caloosahatchee
River Basin and its receiving waters.Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-7 5.2.2.1 Hydrological Simulation Program—FORTRAN

The watershed or hydrologic model of the Caloos ahatchee River Basin is being developed using the modeling software called the Hydrological Si mulation Program—Fortran (HSPF). The
watershed model will be used to simulate rain fall, runoff, evaporation, infiltration, irrigation, stream and channel flow, and related water qualit y in the tributary sub-basins flowing into the
Caloosahatchee River. The model also simulates flow and water quality constituents such as temperature, five-day biochemical oxygen demand (BOD 5 ), total suspended solids (TSS), TN, TP, corrected chlorophyll- a , DO, fecal coliform, and it will provide a polluta nt load time-series. All of these parameters are used as input to the Environmental Fluid Dynamics Code (EFDC) hydrodynamic and water quality model.

The hydrologic component of the HSPF model wa s calibrated using data from 2001 through 2005 and validated using data from 1997 through 1999. The water quality component of the model was calibrated using the ambient water quality data from 2004 through 2005 and validated using data from 2002 through 2003.

5.2.2.2 Environmental Fluid Dynamics Code

The modeling software used to cr eate the receiving wa terbody model is the Environmental Fluid Dynamics Code (EFDC). The EFDC water quality model being developed for the TMDL process for the Caloosahatchee Estuary was initially based on the EFDC model of the Caloosahatchee River for the USACE (DSLLC , 2007). The USACE Caloosahatchee Estuary Model was developed to evaluate release s cenarios from Lake Okeechobee and as a water management tool.

The EFDC water quality model is a 3-D grid hy drodynamic model that simulates flow, transport, and biogeochemical processes in th e tidal Caloosahatchee River Ba sin. The receiving waterbody model will include a fine-grid hydrodynamic, solid s transport, and water quality model. A separate coarse-grid model of th e near ocean portion of the Gulf of Mexico extending from Port Charlotte to Naples, Florida wa s also developed to simulate the effects of meteorological phenomena and tidal interactions between the Ca loosahatchee River and its receiving water the Gulf of Mexico, as shown in Figure 5.4 . The calibration period for the hydrodynamic/salinity component of the EFDC model is from January 1, 2003 to December 31, 2003. The water quality component of the EFDC simulates the biochemical pr ocesses involving phytoplankton growth, nutrient cycling, and dissolved oxygen dynamics. The EFDC water quality model used water quality data collected in 2003 fo r calibration and 2004 for validation.Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-8 Figure 5-4. EFDC Fine and Coarse-Grain Grid Model Comparison

5.3 Development of Total Maximum Daily L oads for Tidal Caloosahatchee Basin

The major activities that have occurred to date or are currently taking place listed below.

• Camp, Dresser, McKee and Dynamic Solutions , LLC (CDM/DS) was contracted in July 2007 to perform water quality modeli ng of the Caloosahatchee Estuary.

• Sites for flow monitoring stations on tributar ies to the Tidal Caloosahatchee Basin were identified, based on the potential impact to the Caloosahatchee River Basin (size of contributing sub-basin and le vel of pollutant load).

• The U.S. Geological Survey (USGS) was contra cted in August 2007 to install equipment at seven sites to continuously monito r the water level, wa ter velocity, temperat ure, and salinity, as well as permit computation of discharge wi thin the Caloosahatchee River Basin. These seven sites are located in the Caloosahatchee River near the mouth at Shell Point,
Caloosahatchee River at Marker #52 near US -41, Telegraph Creek, Orange River, Hancock Creek, Billy’s Creek, and Popash Creek. In the summer and fall of 2007, FDEP calculated
flow from five tributaries to the Caloos ahatchee River using portable flow meters, specifically at Manuel’s Branch, Stroud Creek, Owl Creek, Powell Creek, and Yellow Fever Creek. This work was done prio r to the USGS installation of the stationary instrumentation and provided data from smaller tribut aries that are no tidally influenced.

• FDEP District personnel began discussions with Johnson Engineer ing about the firm’s sampling program in Telegraph Swamp (where Babcock Ranch property is located) toChapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-9 determine if and how this data might be uploaded into the Florida Storage and Retrieval (STORET) database. This effort was impor tant because Telegraph Swamp was the single
WBID in the Tidal Caloosahatchee Basin for which FDEP had no data for TMDL assessment. These water quality and flow data were subsequently submitted to FDEP.

• In May 2007, monthly Caloosahatchee TMDL Technical Working Group meetings began, and in August 2007 these meetings were suppl emented by monthly teleconferences. The goal of these meetings and teleconferences is to facilitate technical discussions between
FDEP and local stakeholders to enhance the development of the Tidal Caloosahatchee Basin DO and Nutrient TMDL as well as the subseque nt TMDLs in 2010. The topics of discussion
include:

− Optimum locations for USGS flow monitoring instrumentation;

− Hydrologic computer modeling options;

− Strategies for developing nut rient target concentrations;

− Coordination with SFWMD on the Caloosah atchee River Watershed Protection Plan and Research and Water Quality Monitoring Planning;

− Information gathering for water quality model and TMDL;

− CDM/DS contract deliverables provided to group for comments, in cluding report with historical data and report with Calibrated/Validated Model;

− Identification of baseline and management scenarios for model simulations; and

− Best management practices (BMPs) and othe r issues relevant to TMDL development.

• In August 2007, a public meeting was conducted in Fort Myers to announce the intent to develop a TMDL for the Tidal Caloosahatchee Basin.

• In May 2008, the FDEP added continuously mon itoring YSIs to the USGS flow monitoring sites at Marker #52, Telegraph Creek, and Orange River. The purpose is to supplement the flow data with continuous DO, conductance, and pH data.

5.4 Timetable for Total Maximum Daily Load Completion

An estimate to completion for issuance of the nutrient (TP and TN) and DO TMDL for the Caloosahatchee River Basin is provided in Table 5-3 . The schedule is based on best available data, but it may be subject to change.

Table 5-3. Caloosahatchee River Basin Total Maximum Daily Load Schedule

Action Item Projected Dates

1 Writing draft TMDL docum ents with reviewer inputs In progress through the middle of November 2008

2 Compile local project details for modeling and TMDL existing and historic conditions chapters Primarily completed April/2008 for incorporation in model, but information gathering continues throughout project

3 Compile Ag BMP details, with SFWMD assistance, for background information, model setup and scenarios Through Mid-July 2008Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-10 Action Item Projected Dates

4 Discuss modeled scenario results with Technical Working Group August through Early November 2008

5 Announce 1st public meeting Early September 2008

6 1st public meeting: review of TMDL model
scenarios Early October 2008

7 Announce 2nd public meeting Early October 2008

8 2nd public meeting: review TMDL approach and

progress Early November 2008

9 Review TMDL documents by SFWMD and Working Group mid October through mid November 2008

10 Internal FDEP administ rative review of draft
TMDL Mid-October through November 2008

11 Notice public workshop (Draft TMDL documents required) Mid-November 2008

12 Post Draft TMDL on FDEP website Mid-November 2008

13 Comment Period for Draft TMDL Mid- November 2008 - Late December 2008

14 TMDL public workshop (to presen t Draft TMDL) Early December 2008

15 Develop and post Final TMDL documents to website Early January 2009

16 Administrative steps for adoption Early January 2009

17 FDEP adoption of TMDLs Mid-January 2009

18 BMAP kickoff Late January 2009

5.5 Basin Management Action Plans

This TMDL will be implemented primarily through a BMAP. Section 373.4595 F.S. requires
that the BMAP be initiated no later than 90 da ys after adoption of this TMDL, and that the BMAP be completed as soon as practicable. In the Caloosahatchee River Watershed, the BMAP process will be closely coordina ted with the NEEPP Watershed Prot ection Plan. As discussed in Chapter 1, the CRWPP is being developed primar ily by SFWMD, with participation from FDEP, Florida Department of Agricultur e and Consumer Services (FDACS) , and a variety of interested
stakeholders. The CRWPP is due to the Florida Legislature on January 1, 2009.

Section 373.4595, F.S. calls for expeditious imple mentation of the CRWPP, and states that implementation of the CRWPP and any related BMAPs is a reasonable means of achieving TMDLs and compliance with state water quality standards. SFWMD and FDEP are working closely together to coordinate the NEEPP and BM AP processes, avoid overlap, and ensure that implementation efforts are timely and cost-effectiv e. Prior to initiation of the BMAP, FDEP will closely review the CRWPP and identify components of the CRWPP that are directly applicable to the BMAP. The development of BMAPs and implementation of TMDLs are outlined in Section 403.067(7), F.S. and include the following elements:

• Appropriate load reduction allo cations among the affected part ies, or to th e basin as a whole (403.067(7)(a)2);

• A description of the appropriate management strategies to be undertaken, including regional treatment systems or othe r public works, where appropriate;Chapter 5

Caloosahatchee River Watershed Protection Plan January 2009
5-11 • An implementation schedule;

• A basis for evaluating the Plan’s effectiveness;

• Feasible funding strategies;

• Linkages to affected National Pollution Disc harge Elimination System (NPDES) permits;

• Mechanisms by which potential future increases in pollutant loading will be addressed;

• A water quality monitoring component sufficien t to evaluate progre ss in pollutant load reductions; and

• An assessment process to occur no less than every five years.

The BMAP will likely include other factors beyond these basic elements. The BMAP development process will occur with the close coordination of local stakeholders and NEEPP coordinating agencies (FDEP, SFWMD and FD ACS), many of whom were involved in development of the TMDL.

### CHAPTER 6.0

CALOOSAHATCHEE RIVER WA TERSHED CONSTRUCTION
PROJECTChapter 6.0

Caloosahatchee River Watershed Protection Plan January 2009
6-1 6.0 CALOOSAHATCHEE RIVER WATERSHED CONSTRUCTION PROJECT

Section 373.4595(4)(b)1., Florida Statutes (F .S.), requires the establishment of a
Caloosahatchee River Watershed Construction Project. The purpose of the project is to identify potential water quality and quantit y projects within the Caloosahatchee River Watershed and Estuary, formulate alternativ es based on the projects identified, and identify a preferred Plan that results in the most benefits to the Ca loosahatchee Estuary.

This chapter includes the following five secti ons which describe the tools and processes
used to formulate and evaluate alternatives to meet overall project objectives for water quality and quantity. As a resu lt, a preferred Plan is identified that provides the best overall strategy for improving the hydrology, wa ter quality, and aquatic habitats within
the Caloosahatchee River Watershed Protectio n Plan (CRWPP) study area. The basis for
the identification of th e preferred Plan is discussed in Section 6.5. A detailed description of the preferred Plan is included in Chapter 9.

Section 6.1 - Management Measures – This section discusses the different management
measures identified within the Caloosahatch ee River Watershed that can address one or more of the planning objectives. Manage ment measures discussed include water quantity/storage projects, watershed water quality projects, and land management and restoration projects.

Section 6.2 - Water Quantity Analysis Method – This section provides an overview of the analysis method used to evaluate project alternatives in terms of water quantity performance measures and performance indicators.

Section 6.3 - Water Quality Analysis Method and Base Condition Characterization

– This section provides an overview of the method used to evaluate project alternatives in terms of water quality performance measures. Section 6.3 also characterizes the current water quality conditions of the Caloosah atchee River Watershed and provides a discussion of the water quality benefits of the base projects included in the River
Watershed Protection Plan Base Condition.

Section 6.4 - Formulation of Alternative Plans – This section describes the CRWPP formulation process including the goals, challe nges, and development of alternatives. The alternative plans were formulated and evaluated by the coordinating agencies in consultation with the CRWPP Working Team. Th e water quantity and quality benefits of
each alternative are summarized.

Section 6.5 - Alternative Plan Evaluation and Comparison – This section evaluates and compares the water storage and quality resu lts of the four alternatives to the water quantity and water quality target s. This section also identifies the Caloosahatchee River
Watershed Construction Project preferred Plan.

### SECTION 6.1

MANAGEMENT MEASURESSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-i TABLE OF CONTENTS

6.1 Management Measures .................................................................................6.1-1
6.1.1 Management Measures Toolbox...........................................................6.1-1
6.1.2 Risk and Uncertainties Analysis ...........................................................6.1-2
6.1.3 Estimating Uncertainties Associated with Management Measure Levels
............................................................................................................... 6.1-2
6.1.4 Estimating Uncertainties Associated with Management Measure
Performance .......................................................................................... 6.1-3
6.1.5 Types of Management Measures ..........................................................6.1-4
6.1.5.1 Water Quantity/Storage..............................................................6.1-4
6.1.5.2 Watershed Water Quality Projects .............................................6.1-6
6.1.5.3 Land Management and Restoration..........................................6.1-10

LIST OF TABLES

6.1-1 Management Measures Summary Table......................................................... 6.1-12

LIST OF FIGURES

6.1-1 Typical Aquifer Storage a nd Recovery Well System....................................... 6.1-5 6.1-2 Typical STA with Emergent and Submerged Vegetation................................. 6.1-8 6.1-3 Typical Hybrid Wetland Treatment Technology ........................................... 6.1-10Section 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-1 6.1 MANAGEMENT MEASURES

A management measure is a current or future feature or activity that can be implemented at a specific site within the study area to address one or more planning objectives. A
feature is a structural elemen t that requires construction or on-site assembly. Storage reservoirs, stormwater treatment areas (STAs) , and structural best management practices (BMPs) are examples of features. An activity is a non-structural ac tion or practice, such as operational changes, regulatory programs, and modified land management practices. Management measures are building blocks that can be combined to form alternative plans.

6.1.1 Management Measures Toolbox

The coordinating agencies developed the mana gement measures toolbox by seeking input
from the Caloosahatchee River Watershed Protection Plan (CRWPP) Working Team, a group of federal, state, and local agencies an d interested stakeholders. The management measures toolbox is a compilation of various management measures that, if implemented in the Caloosahatchee River Watershed, could achieve the stated project objectives. Management measures include both projects specific to the Caloosahatchee River Watershed and Estuary and management meas ures from the Lake Okeechobee Watershed Construction Project, Phase II Technical Pl an (LOP2TP) that were relevant to the Caloosahatchee River Watershed. The manage ment measures toolbo x is provided in Appendix B

.
The management measure sheets provide the general description/background of the management measure and its purpose, the sub-wa tershed in which it is located, the size and capacity of the feature, and the status of the initiative as provided by the working team. Each management measure sheet also includes the summary of final water quality and water quantity benefits as determined by the working team. Each management measure was designated with an individual id entification code. Ma nagement measures included in the LOP2TP begin with the letter s CRE-LO. Management measures specific
to the Caloosahatchee River Watershed and not included in the LOP2TP begin with the
letters CRE. The initial CRE management measures were then assigned numbers in an east to west order. Later management meas ures were assigned numbers chronologically.

Each management measure was also assigned a level of certaint y using the following
scale:

• Level 1 – Already constructed or im plemented, or construction and/or implementation is imminent;

• Level 2 – Construction/implementati on likely, detailed design/activity development ongoing, siting location well defined;

• Level 3 – Implementation certainty unknown, conceptual level of design/activity development complete, siting location may be defined;

• Level 4 – Implementation certainty unknown, conceptual idea with rough order of magnitude costs and siting location; andSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-2 • Level 5 – Implementation certainty unknown, conceptual idea with limited
information.

For management measures, a ra nge (minimum, most likely, and maximum) for nutrient reduction and/or storage benefits was also es tablished. The management measures were
then screened for inclusion into the alte rnatives formulation by determining if the management measure would at a minimum support the objectives of the CRWPP.

6.1.2 Risk and Uncertainties Analysis

With any large water resources planning effort , there are numerous sources of uncertainty that can potentially impact project outcome. Since each manageme nt measure carries a level of risk, the risks were also carried over to the alternatives subjecting them to some level of uncertainty. Sources of uncertainty may include:

• Scale of the project;

• Complexity and diversity of the problems and potential solutions;

• Relationships between the impacted physical processes;

• Conceptual nature of some of the plan components based on assigned level; and

• Uncertainty related to the performa nce of management measures.

6.1.3 Estimating Uncertainties Associated with Management Measure Levels

The potential risks associated with the management measures’ assigned level was evaluated so that appropriate risk management approaches could be considered. Since management measures risks fall between Le vel 1 (substantially defined) to Level 5 (conceptual), all management measures were evaluated allowing for the following
criteria.

Level 1 management measures include the following characteristics:

• Substantial data supports the technologies effectiveness in similar conditions and scale;

• Planning, design/engineering and permitting has been completed and shows that, compared to other management measures, th is measure is the most appropriate for the site-specific situation;

• Private land owners, stakeholders, intere st groups, the general public, and other agencies have been involved in development of the plan;

• Cost estimates have been prepared;

• Site selection has occurred and/or requir ed real estate interests have been obtained;

• Funding has been budgeted and encumbered; and

• Construction may have begun or even completed.Section 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-3 Level 5 management measures may c ontain the following characteristics:

• The proposed technology may be untested fo r the use and scale being considered;

• Only conceptual descriptions of th e approach have been developed;

• Limited or no coordination has o ccurred between stakeholders;

• Design work has not been initiated;

• Site selection has not occurred except on a regional basis;

• Funding has not been established; and

• Permitting has not been initiated due to lack of information.

6.1.4 Estimating Uncertainties Associat ed with Management Measure
Performance

A very conservative approach was taken when quantifying water quantity and water quality benefits anticipated from individua l management measures. When management measures were evaluated for water quantity or water quality benefits, values were estimated as minimum, most likely, and ma ximum. The most likely performance value was then assigned to the management measur e. If a management measure was submitted with a benefit enumerated, that number was ve rified and accepted. Many water quality management measures did not have performa nce values assigned due to insufficient or preliminary information, therefore additional wa ter quality benefits may be provided that
are not included in the estimat es for the four alternatives.

Despite this conservative approach, uncertain ties associated with the performance of management measures remain. Uncertainties in potential water quantity were related to the following factors:

• Availability of adequate land;

• Cost of available land;

• Existence of geotechnical conditions conduc ive to construction of surface storage reservoirs;

• Availability of land in locations most suitable for capturing and storing flows,

• Interactions among various storage facilities; and

• Specific operational criteria for storage features.

Uncertainties in potenti al total phosphorus (TP) and tota l nitrogen (TN) load reduction performance of management measures ar e related to the following factors:

• Extent of nutrient control with different technologies;

• Most appropriate technology for nitrogen control and how to optimize treatment for nitrogen reduction;

• The availability of lands;

• Accuracy of projected flow volum es and nutrient concentrations;

• Inflow water chemistry; and

• Synergy and interactions between treatm ent facilities and storage facilities.Section 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-4 6.1.5 Types of Management Measures

The management measures in the toolbox could be applied either at the local (parcel) or regional level (sub-watershed) sc ale. Local features typically have minimal requirements for engineering, construction, and operations. Th ese local features also have relatively smaller real estate requirements and pr omote landowner involvement. In contrast, regional features require si gnificant amounts of real es tate acquisition, engineering, construction, and operations. Another scale designation is source co ntrol which includes projects that contain po llutants on site, many of which were included in the report entitled Nutrient Loading Rates, Reduction Factors and Implementation Costs Associated with BMPs and Technologies (Soil and Water Engineering Technology, Inc. 2008) ( Appendix
D ).

Management measures can also be broadly gr ouped into three general categories. These categories include water quantity/storage projects, water quality projects, and land management and restoration projects. Table 6.1-1 (at the end of this section) shows the scale, general category, and sub-watershed fo r each management measure in the toolbox.

6.1.5.1 Water Quantity/Storage

Management measures considered for capturing and storing stormwater runoff in the watershed include aboveground reservoirs, alte rnative water storage/disposal projects, and aquifer storage and recovery (ASR) wells.

6.1.5.1.1 Reservoirs

Aboveground reservoirs are the most common type s of surface water storage features that comprise large areas of land surrounded by levees that are used to store water. They also provide ancillary water quality benefits because nutrients and contaminants tend to settle out within the reservoir. Reservoir storage sites are planned at va rious sites throughout the watershed, including the C- 43 Distributed Reservoirs Project and the C-43 West Basin Storage Reservoir.

6.1.5.1.2 Aquifer Storage and Recovery

ASR involves injecting water in to an aqui fer through wells and then pumping it out from the same aquifer when needed. The aquife r essentially functions as a water bank. Deposits are made in times of surplus, typi cally during the rainy season, and withdrawals occur when available water is needed, typi cally during a dry period. Storage zone monitoring wells are also put in place and eq uipped with water-level recorders to track the water levels within the storage zone. Mon itoring wells can also be used to test water quality parameters such as chloride, al kalinity, bicarbonate, pH, sulfate, sodium, potassium, magnesium, total disso lved solids, specific conductance, salinity, temperature, and turbidity. Figure 6.1-1 displays a typical ASR well system.Section 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-5 Figure 6.1-1. Typical Aquifer Storage and Recovery Well System

Interest and activity in ASR wells in South Florida has greatly incr eased over the past 10 to 15 years. ASR wells have typically been used in South Florida to store excess freshwater during the wet season and subseque ntly recover it duri ng the dry season for use as an alternative drinking-water supply source. Many utility-operated ASR facilities now have wells completed in deep confined aquifers for this purpose. Large-scale application of the ASR technology is unde r evaluation as a storage option in the Comprehensive Everglades Restoration Plan (CERP).

A series of CERP pilot projects and a re gional ASR study are curre ntly underway and are being evaluated to help determine the magnitude of ASRs needed to assist with managing
Lake Okeechobee water levels at more eco logically desirable ranges and to reduce undesirable discharges to the Caloosahatchee and St. Lucie estuaries. The CERP ASR Program initially included three ASR pilot projects: Lake Okeechobee, Hillsboro Canal, and the Caloosahatchee River. However, because of the extensive scope of ASR envisioned for Lake Okeechobee, the Lake Okeechobee ASR Pilot Project was later split into three distinct project locations: Kissi mmee River, Port Mayakka, and Moore Haven, bringing the total pilot project sites to five.

6.1.5.1.3 Alternative Water Storage/Disposal

Alternative water storage/disposal projects prevent runoff from reaching the regional drainage system, improve the timing of its delivery, and can be developed on available private, public, and tribal lands. They are used to store and/or dispose of excess water by capturing it prior to runoff or pumping it from areas or canals with excess water, and holding it in the facility. In most cases, alternative water storage/disposal projects involve simple technology approaches such as the use of pumps to move water to theSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-6 desired area and the constructi on of weirs, berms, and sma ll impoundments to detain the water in the facility. Alternative water st orage/disposal projects typically require minimal design, engineering, and construction effort. If they are established on existing wetlands, they are designed and operated to improve the existing wetland functions.

Several alternative water storage/disposal proj ects are currently in operation in the Lake Okeechobee Watershed and are planned for both private and public lands located within the Caloosahatchee River Watershed, such as the Recyclable Water Containment Areas.

6.1.5.2 Watershed Water Quality Projects

Watershed water quality projects focus on reducing TP and TN loading within the
watershed before nutrients reach the Caloos ahatchee Estuary. Management measures under this general category include source control/BMPs, STAs and water quality treatment areas, managed aquatic plant systems, stormwater management system, chemical treatment, Hybrid Wetland Treatment Technology, and waste management.

6.1.5.2.1 Source Control

Source control projects include activities and measures that focus on capturing nutrients at the source and prevent nutrients from l eaving the site and entering other surface waters. The main purposes of s ource control projects are to:

• Minimize the use of nutrients on site;

• Ensure the nutrients are applie d in an effective manner; and

• Prevent nutrient laden waters from leaving the site.

Agricultural and urban BMPs are examples of efficient and effective source control measures. The Northern Everglades a nd Estuaries Protection Program (NEEPP) legislation defines a BMP as “ a practice or combination of practices determined by the coordinating agencies, based on resear ch, field-testing, and expert review, to be the most effective and practicable on-location means including economic and technological considerations for improving water quality in agricultural and urban discharges

. Best management practices for agricultural dischar ges shall reflect a balance between water quality improvements and agr icultural productivity, ” Section 373.4595(2)(a), Florida Statutes (F.S.)(2007). BMPs include struct ural measures such as creating physical changes in the landscape to reroute local disc harges and erecting fen ces and barriers; and
include non-structural measures such as education, operationa l changes, fertilizer application techniques, a nd establishing regulations.

Regardless of how it is achieve d, source control is integral to the success of any water resource protection or restoration program. BMPs or other treatments are often utilized in a series to improve water quality by contro lling the introduc tion (source) of nutrients into the local runoff and the movement of off-site nutrients (loss) into the drainage system. This combination of treatment t echnologies is known as a treatment train, because BMPs and other treatment are implem ented in a series, like cars on a train. Without BMPs as the first stage technology util ized within water quality treatment trains, treatment and cost effectiveness of large, regi onal, capital projects such as reservoirs andSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-7 STAs will be limited. Moreover, the total cost s associated with pollutant removal can be substantially reduced if the pollutant is not in itially allowed to enter the drainage system.

6.1.5.2.2 Stormwater Treatment Areas/Water Quality Treatment Areas

Water quality treatment areas are construc ted wetlands designed for optimal nutrient removal. When water flows through floode d wetland cells, plants and algae remove
nutrients from the water. Constructed wetlands have been shown to be very efficient in reducing nutrient loads and concentrations.

Like water quality treatment areas, STAs are constructed wetlands that have been used very successfully in South Florida to treat nutrient-rich stormwater runoff. Typically, STAs comprise flooded cells with em ergent or submerged vegetation ( Figure 6.1-2 ). When water flows through these cells, wetland plants and algae absorb nutrients from the
water. Constructed wetlands have been show n to be very efficient in reducing nutrient
loads and concentrations. Even after plants in an STA di e, leaf decomposition helps sequester sediments on the wetland bottom. Cattail roots readily absorb TP from these sediments (Newman et al., 1998). Over the pa st decade, more than 40,000 acres of STAs
have been constructed in south Florida to fa cilitate restoration of the Everglades. The STAs are maintained and operated by Sout h Florida Water Mana gement District (SFWMD).

The primary advantage of STAs, particularly as th ey relate to TP removal, is that they are relatively easy to design, construct, and ope rate. They do not use any chemicals to precipitate nutrients and are environmentally friendly. However, they require large tracts of land and have relatively high evapotranspi ration rates. Increasi ng the depth of the STAs and using a compartmentalizing design can minimize these disadvantages. STAs also require adaptive management and maintenance in order to maintain their required performance level. As more information of th e lifecycle performance of these facilities is obtained, it will be used to validate the effi ciencies of STAs. Understanding the removal efficiencies over time will help to identify the performance levels, maintenance, and adaptive management needs. Factors to be considered in the adaptive management process include the size of the watershed, treatment area, inflow /outflow, and nutrient rates. As the Caloosahatchee Estuary is c onsidered to be TN limited, the STA technology may be modified to more specifically target TN removal in addition to TP removal.Section 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-8 Figure 6.1-2. Typical STA with Emergent and Submerged Vegetation

There are both regional-scale and local-scale water quality treatment areas included in the management measures. The regional-scale water quality treatment areas within the
Caloosahatchee Watershed include the Clewiston STA and C-43 Water Quality Treatment and Demonstration Project (BOMA Property). Many of the local-scale water quality treatment areas are smaller wet detenti on projects associated with older residential developments that lack storm water treatment systems. Collectively, these local-scale water quality treatment areas have the potenti al to make a significant difference in water quality within the Caloosahatchee Estuary.

6.1.5.2.3 Managed Aquatic Plant Systems

Managed aquatic plant systems are aquatic plant-based water treatment units. The technology involves routing nu trient-loaded stormwater in to ponds that are vegetated with plants that have enhanced ability to ab sorb and assimilate nutr ients. A variant of managed aquatic plant systems, which is curre ntly proposed as a management measure to be included in the CRWPP, is known as the Algal Turf Scrubber TM (ATS). This technology developed by HydroMentia, Inc. , involves the cultivation of a mixed community of periphytic algae that are cult ured on an engineered geomembrane. The geomembrane sits on a grid across which nutrien t-rich waters are discharged. Algae that then grow on the geomembrane are periodically scraped and collected with an automatic rake at a harvesting station. The harveste d biomass is then conveyed to a bunker for storage and further processing.

The two primary advantages of managed aquatic plant systems are that the plant biomass is routinely harvested and poten tially recycled into marketab le products and they require relatively little land. These advantages make them a cost-effective option for locations that are limited, either due to land availability or cost. The effectiveness of the managedSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-9 aquatic plant systems in treatin g nutrient rich stormwater on a large scale has not yet been
demonstrated.

6.1.5.2.4 Stormwater Management

The installation or upgrade of an urban st ormwater management system can improve surface water quality in the watershed. A va riety of structures (e.g. wet detention ponds, vegetated swales, diversion weirs, etc.) w ithin the system can attenuate surface water flow to increase percolation for groundwater storage, facilitate settling, and promote nutrient uptake prior to receiving water discharg e. Local scale STAs, such as smaller wet detention projects associated with older resi dential developments that lack stormwater treatment systems, have the potential to make a big difference in water quality within the Caloosahatchee Estuary.

System retrofit projects and local government Stormwater Master Plan implementation projects are management measures that will improve the conveyance of stormwater during storm events and reduce pollut ant loadings from urban runoff.

6.1.5.2.5 Chemical Treatment

Chemical treatment involves application of ch emicals into stormwater runoff to aid in
reduction of contaminant loads and concentratio ns, and of turbidity (suspended solids) in
the water. It has also been successfu lly used to reduce turbidity and nutrient concentrations in drinking water and wastewat er. Application of chemicals to stormwater to reduce nutrient loads is relatively new and has been tested in some locations such as Lake Apopka and the Everglades with varying levels of success (S FWMD et al., 2007).
Chemical treatment can be used in combin ation with wet detention of stormwater, treatment of runoff prior to storage, or wi th supplemental treatment associated with reservoirs or STAs. The specific technology th at will work best at any given location will primarily depend upon inflow water quality and the quantity of water to be treated. Management measures that include chemical treatment may be included in future plan updates.

Review of available literature indicates that calcium, iron, and aluminum salts are effective at reducing TP loads in stormw ater runoff (SFWMD et al., 2007). These technologies can be applied both in-stream and in off-line treatment systems. Aluminum sulfate (alum) treatment has been used as a stormwater retrofit op tion for the past 20 years. This technology is a viable retrofit option for urba n areas. Alum treatment of stormwater consistently provi des removal efficiencies of 85 to 95 percent for total TP, greater than 95 percent for tota l suspended solids (TSS), 35 to 70 percent for total TN, 60 to 90 percent for metals, and 90 to greater than 99 percent for total and fecal coliform bacteria (Harper 2007).

6.1.5.2.6 Hybrid Wetland Treatment Technology

Hybrid Wetland Treatment Technology combin es the strengths of the two top-ranked nutrient removal technologies, namely treatment wetlands and chemical injection system. This synergy results in nutrient removal effi ciencies beyond those attainable by eitherSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-10 separate technology with lowe r capital and operati ng costs. Optimization of system performance is achieved by adjusting hydraulic retention time (area of facility) and/or chemical dosing rates. H ybrid Wetland Treatment Tec hnology has been previously
demonstrated to reduce P concentrations from over 1,000 parts per bi llion (ppb) to less than 100 ppb (Watershed Technologies, Inc. 2007). Preliminary data from the existing full-scale Hybrid Wetland Treatment Technolo gy facilities in La ke Okeechobee and St.
Lucie watersheds show P concentration reductio ns in the range of 84 to 94 percent. A typical schematic of the treatment system is shown in Figure 6.1-3

.

Figure 6.1-3. Typical Hybrid Wetland Treatment Technology

Four pilot Hybrid Wetland Treatment Tec hnology systems are currently being fieldtested. Three systems are lo cated in the Lake Okeechobee Watershed and one system is
located in the St. Lucie River Watershed. If successful, other locations will be evaluated for application of this technology. Dependi ng on the success of the pilot projects, additional Hybrid Wetland Treatment T echnology management measures may be included in future plan updates.

6.1.5.2.7 Waste Management

Effluent discharges from existing domestic wastewater treatment facilities are required to meet minimum secondary treatment standa rds in accordance with Rule 62-600.420(1), F.A.C. New facility permits and modificatio n/renewal permits are frequently requiring alternative effluent discharge methods, such as reuse and ground water injection, which reduce the P and N load entering the estuary th rough direct discharge. In addition, other management measures will resu lt in the diversion of wastewat er effluent di scharges from treatment plants where there is insufficient demand for reclaimed water to facilities that have reclaimed water storage and distribution infrastructu re in place, such as the Wastewater Treatment Plant Upgrade and Reclaimed Water Project (CRE 129).

6.1.5.3 Land Management and Restoration

Land management, conservation, and rest oration of natural areas within the
Caloosahatchee River Watershed are also in corporated into th e CRWPP. Many land management and restoration management measures may effectively provide water quantity and/or quality benefits to the surrounding watershed and downstream waterbodies. Management measures include creation and restoration of wetlands andSection 6.1

Caloosahatchee River Watershed Protection Plan January 2009
6.1-11 incorporation of growth ma nagement techniques and initiatives that integrate environmental objectives into urban growth planning.

6.1.5.3.1 Wetland Restoration

Natural wetlands sequester surface water flows and provide water quality treatment through assimilation and sedimentation. Wetland restoration in cludes enhancing degraded wetlands or restoring areas that were historically wetlands. Wetland restoration may be stand-alone projects, or they may be integral components of other management measures, such as Florida Ranchlands Envir onmental Services Project (CRE-LO 87c).

6.1.5.3.2 Land Conservation

Conservation of natural areas in urban setti ngs provides both natural and social benefits. One example is the Coastal and Estuarin e Land Conservation Program (CRE-LO 09), which was established in 2002 to protect coasta l and estuarine lands considered important for their ecological, conservation, recreationa l, historical or aes thetic values. The program provides state and local government s with matching f unds to purchase significant coastal and estuarine lands, or conservation easements on such lands, from willing sellers. Lands or conservation easements acquired with Coastal and Estuarine Land Conservation Program funds are protected in perpetuity so that they may be enjoyed by future generations.

Another example is the Farm and Ranchland Partnerships (CRE-LO 91), which seeks to acquire easements on private lands to remain in agriculture and to provide water quality and storage benefits in support of the Northern Everglades initiative.

6.1.5.3.3 Integrated Growth Management and Restoration

This category includes programs and projects that integrate environmental restoration objectives with urban growth initiatives. Planning and economic incentives are typically provided to encourage the use of innovative and flexible planning and development strategies creating land use planning te chniques that minimize the footprint of developments while conserving natural lands and open spac es. Comprehensive PlanningLand Development Regulations (CRE-LO 68) is an initiative to work with those entities (e.g. cities and counties) in the Caloosah atchee River Watershed responsible for comprehensive planning and land developm ent proposals. The initiative involves reviewing current comprehensive plans and as sociated land development regulations to assure that they promote low-impact design and proper stormwater treatment.

In 2001, the Florida Legislature established Section 163.3177(11)(d), Florida Statutes, the Rural Land Stewardship Area Program. This pr ogram allows counties to designate Rural Land Stewardship Areas, to include all or porti ons of lands classified in the future land use element as predominantly agricultural, ru ral, open, open-rural, or a substantively equivalent land use.Section 6.1Caloosahatchee River Watershed Protection Plan January 20096.1-12Table 6.1-1.Management Measure Summary TableManagementMeasure #Project Feature/Activity CategorySub-watershed/Basin1Project ScaleCRE-LO01,02,49Agricultural BMPs- Owner Implemented, Funded Cost Share, and CostShare Future FundingWater Quality AllSourceControlCRE-LO 03Urban Turf Fertilizer Rule [Lake Okeechobee Estuary and Recovery(LOER)]Water Quality AllSourceControlCRE-LO 04Land Applications of Residuals Water Quality AllSourceControlCRE-LO 05Florida Yards and Neighborhoods Water Quality AllSourceControlCRE-LO 07Environmental Resource Permit (ERP) Regulatory Program Water Quality AllSourceControlCRE-LO 08National Pollutant Discharge Elimination System (NPDES) StormwaterProgramWater Quality AllSourceControlCRE-LO 09Coastal & Estuarine Land Conservation ProgramLand Management andRestorationTN, TS, EST, NC,NSRegionalCRE-LO 12gAlternative Water Storage (LOER)- Barron Water Control District(BWCD)Water Quantity/Storage FSW LocalCRE-LO 15Proposed Caloosahatchee River Watershed Regulatory Nutrient SourceControl ProgramWater Quality AllSourceControlCRE-LO 21Lake Okeechobee and Estuary Watershed Basin Rule (LOER) Water Quality AllSourceControlCRE-LO 40West Lake Hicpochee Project Water Quantity/Storage FNE RegionalCRE-LO 41C-43 Distributed Reservoirs Water Quantity/Storage FSE,FNE RegionalCRE-LO 63Wastewater & Stormwater Master PlansWater Quantity/Storage andWater QualityAllSourceControlCRE-LO 64Proposed Unified Statewide Stormwater Rule Water Quality AllSourceControlCRE-LO 68Comprehensive Planning - Land Development Regulations (LDR)Land Management andRestorationAllSourceControlCRE-LO 87cFlorida Ranchlands Environmental Services ProjectLand Management andRestorationAll LocalCRE-LO 91Farm and Ranchland PartnershipsLand Management andRestorationAllSourceControlSection 6.1Caloosahatchee River Watershed Protection Plan January 20096.1-13ManagementMeasure #Project Feature/Activity CategorySub-watershed/Basin1Project ScaleCRE-LO 92Clewiston STA Water Quality S-4 LocalCRE 01Recyclable Water Containment Areas (RWCA) Water Quantity/Storage All LocalCRE 02Recycled Water Containment Area in theS-4 Basin Water Quantity/Storage S-4 LocalCRE 04Caloosahatchee Area Lakes Restoration (Lake Hicpochee)Water Quality and WaterQuantity/StorageFNE, FSE RegionalCRE 05East Caloosahatchee Water Quality Treatment Area Water Quality FNE RegionalCRE 10C-43 Water Quality Treatment and Demonstration Project (BOMAProperty)Water Quality FSE RegionalCRE 11Caloosahatchee Ecoscape Water Quality Treatment AreaWater Quality and WaterQuantity/StorageFSE RegionalCRE 13West Caloosahatchee Water Quality Treatment Area Water Quality FSE RegionalCRE 18Harns Marsh Improvements, Phase I & II Water Quantity/Storage TS RegionalCRE 19Harns Marsh Improvements, Phase II Final Design - ECWCD Water Quantity/Storage TS RegionalCRE 20Yellowtail Structure Construction - ECWCD Water Quantity/Storage TS LocalCRE 21Hendry County Storage Water Quantity/Storage FSW RegionalCRE 22Hendry Extension Canal Widening (Construction) - ECWCD Water Quantity/Storage FSW LocalCRE 29Lehigh Acres Wastewater Treatment & Stormwater Retrofit Water Quality FSW RegionalCRE 30Aquifer Benefit and Storage for Orange River Basin (ABSORB) - ECWCDWater Quality and WaterQuantity/StorageTS RegionalCRE 44Spanish Creek / Four Corners Environmental RestorationWater Quality and WaterQuantity/StorageFNW RegionalCRE 45Billy Creek Filter Marsh, Phase I & II Water Quality TS LocalCRE 48Manuel's Branch Silt Reduction Structure Water Quality TS LocalCRE 49Manuel's Branch East & West Weirs Water Quality TS LocalSection 6.1Caloosahatchee River Watershed Protection Plan January 20096.1-14ManagementMeasure #Project Feature/Activity CategorySub-watershed/Basin1Project ScaleCRE 53Caloosahatchee Creeks PreserveHydrological RestorationWater Quality and WaterQuantity/StorageTN LocalCRE 57Powell Creek Algal Turf Scrubber Water Quality TN LocalCRE 59North Fort Myers Surface Water Restoration Water Quality TN LocalCRE 64Yellow Fever Creek/Gator Slough Transfer Facility Water Quality TN LocalCRE 69Cape Coral Wastewater Treatment & Stormwater Retrofit Water Quality TN RegionalCRE 77Cape Coral - Canal Stormwater Recovery by ASR Water Quantity/Storage TN, NC RegionalCRE 121City of LaBelle Stormwater Master Plan Implementation Water Quality FSW LocalCRE 122Rehydrate Lee County Well Fields (south of Hwy 82) Water Quantity/Storage FSW RegionalCRE 123North Ten Mile Canal Stormwater Treatment System Water Quality TS LocalCRE 124Carrell Canal (FMCC) Water Quality Improvements Water Quality TS LocalCRE 125Shoemaker-Zapato Canal Stormwater Treatment Water Quality TS LocalCRE 126Fort Myers-Cape Coral Reclaimed Water Interconnect Water Quality TN, TS RegionalCRE 128East Caloosahatchee Storage Water Quantity/Storage FNE, FSE RegionalCRE 128aCaloosahatchee Storage - Additional Water Quantity/Storage FNE, FSE RegionalCRE 129Wastewater Treatment PlantUpgrade and Reclaimed WaterWater Quality and WaterQuantity/StorageAll RegionalCRE 130Animal Manure Application Rule Water Quality AllSourceControlCRE 131Application of Septage Rule Water Quality AllSourceControl1Descriptions of the following basins can be found in Chapter 2:FNE = Freshwater Northeast Basin FSW = Freshwater Southwest Basin NC = North Coastal BasinFSE = Freshwater Southeast Basin TN = Tidal North Basin NS = South Coastal BasinFNW = Freshwater Northwest Basin TS = Tidal South Basin EST = Caloosahatchee Estuary

### SECTION 6.2

WATER QUANTITY A NALYSIS METHODSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-i TABLE OF CONTENTS

6.2 Water Quantity Analysis Method ............................................................................. 6.2-1
6.2.1 Modeling Tools................................................................................................... 6.2-1
6.2.1.1 Northern Everglades Regional Simulation Model (NERSM) ..................... 6.2-1
6.2.1.2 Model Scenarios .......................................................................................... 6.2-8
6.2.2 Water Quantity Performance Measures and Targets .......................................... 6.2-9
6.2.2.1 High Discharge Criteria............................................................................... 6.2-9
6.2.2.2 Salinity Envelope......................................................................................... 6.2-9
6.2.2.3 Target Flow Index ....................................................................................... 6.2-9
6.2.2.4 Lake Okeechobee Proposed Minimum Water Level Criterion ................. 6.2-10
6.2.2.5 Supplemental Irrigation Requirements...................................................... 6.2-10

LIST OF FIGURES

6.2-1 Watersheds Simulated in the Nort hern Everglades Regional Simulation
Model ......................................................................................................................... ... 6.2-3 6.2-2 Sample Node-Link Representation for CRWPP Model .............................................. 6.2-5 6.2-3 Target Flow Inde x Criteria Graph............................................................................... 6.2-10Section 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-1 6.2 WATER QUANTITY ANA LYSIS METHOD

This section describes the method used to analy ze water quantity for the Caloosahatchee River Watershed, while water quantity re sults are presented in Section 6.5. To establish a baseline
condition to which all alternativ es will be compared, the River Watershed Protection Plan Base (RWPPB) Condition is characterized and desc ribed. Finally, water quantity performance measures and targets used to evaluate how well each alternative achieves the project goals are
described.

The Caloosahatchee River Watershed Protec tion Plan (CRWPP) bui lds upon the Northern Everglades Lake Okeechobee Watershed Cons truction Project, Phase II Technical Plan (LOP2TP). Thus, the analysis method, modeli ng tools, and overall evaluation methodologies employed in the current planning efforts are simila r to the previous plan. These same methods
and tools are utilized for the St. Lucie River Watershed Protection Plan (SLRWPP), as well. This approach ensures consiste ncy in water quantity analysis conducted for three Northern Everglades watersheds.

6.2.1 Modeling Tools

The water quantity analysis method used in th e CRWPP involves the gene ration of water budgets for each alternative plan. The wa ter budget information provided by the model feeds into a set of performance measures which, in turn, are used to differentiate and compare alternative plans.

A water budget reflects the relationship amon g all the components of hydrologic input and output for a given area. Water generally enters a system through precipitation, as well as surface and groundwater flows. Water generally ex its the system through human consumption (domestic, municipal, industrial, and agricultur al), surface and groundwater flows, evaporation from water surfaces, and transpiration from vege tation. The RWPPB Condition is a scenario that reflects conditions with the LOP2TP in place. Alternatives were devel oped from a series of management measures that are intended to impr ove water quantity and qua lity, consistent with the planning objectives. Each alternative plan represents a unique combination of management measures simulated in the Northern Evergl ades Regional Simulation Model (NERSM), and
whose relative effectiveness is evaluated through a standard set of hydrologic performance

measures.

The CRWPP water quantity analysis was performed at each increment of alternative plan development. Lessons learned from the existing alternatives were used to formulate the next
alternative. The NERSM was se lected as the modeling tool to carry out the water quantity analysis.

6.2.1.1 Northern Everglades Regional Simulation Model (NERSM)

The NERSM is a link-node based model designed to simulate the water budget of a regional scale drainage basin. The model assumes that wa ter in each waterbody is distributed in level pools. Therefore, local-scale feat ures within a watershed, e.g. stag es at specific gauging stations and flows across specific transects, are not simulated. The model domain covers Lake Okeechobee and four major watersheds: Kissimm ee, Lake Okeechobee, St . Lucie River, andSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-2 Caloosahatchee River. The watersheds are furt her divided into sub-wa tersheds, as described below. Several management measures were combined to produce a number of alternatives whose individual impacts on pre- established performance measures have been evaluated. The
model is an effective tool in co mparing the relative performance of the proposed alternatives for
the CRWPP.

The computational engine for the NERSM was c onstructed using an object-oriented approach, which allows new objects to be ad ded without the need to significantly alter the previously coded modules and objects in the computer program. For example, adding the operation of a new reservoir would be simulated as adding a discrete “object” that is automatically assigned with the features and functions commonly defined for a rese rvoir in the water management system. Input data for the model includes daily records of hydrologic and meteorologi cal data (rainfall and potential evapotranspiration), as well as discharges at the bou ndaries for the period between 1970 and 2005. Other model input data includes the phys ical description of management features (e.g., reservoir stage-storage relationship and structure capacities) a nd corresponding operating rules (e.g., maximum operating levels and reservoir outflow priorities).

6.2.1.1.1 Model Setup

The NERSM boundary includes the Lake Okeechob ee, St. Lucie, and Caloosahatchee River watersheds ( Figure 6.2-1 ). In the LOP2TP, the East Okeechobee (St. Lucie River), West Okeechobee (Caloosahatchee River), and the Ever glades Agricultural Area (EAA) watersheds were not explicitly modeled in the NERSM. However, in the planning efforts of the River Watershed Protection Plans, the NERSM domain wa s expanded to include direct simulations of
the St. Lucie and Caloosahatchee River watersheds . Since the EAA is not explicitly modeled, impacts of the EAA reservoir on the other portions of the study area were considered as boundary conditions. This section focuses on the model set-up common to both the LOP2TP and the RWPPB Condition. The succeeding section w ill provide additional details on how the two river watersheds were incorporated into the model.

Lakes in the Upper Kissimmee Watershed and pools in the Lower Kissimmee Watershed are simulated as level pools. Watershed inflows, such as local runoff, are treated as boundary conditions and were generated fr om other hydrologic models or fr om historical data. A flow pass-through approach is used for the other wa tersheds where historical runoff into Lake Okeechobee is modified, based on proposed manageme nt measures specific to these watersheds.

Lake Okeechobee was also simulated using a lump ed hydrologic approach. Certain inflows and outflows from Lake Okeechobee are not simulated, and are incorporated into a modified delta storage term or imposed as boundary conditions. The South Florida Water Management Model (SFWMM) is the main source of boundary cond itions for the NERSM. Boundary conditions include water supply deliveries to the Lower East Coast urban areas and environmental releases to the Everglades. Regulatory releases from Lake Okeechobee to the Caloosahatchee and St. Lucie estuaries and to the Water Conservation Areas (WCAs) are simulated based on the Water Supply/Environmental (WSE) Regulation Schedul e. The Hybrid Lake Okeechobee Water Shortage Management (LOWSM) water supply mana gement scheme is simulated in conjunction with fixed demand boundary conditions to appr oximate the water supply drought managementSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-3 cutbacks for Lake Okeechobee Service Area (LOSA) basins. Lake Okeechobee is a primary or secondary source of water s upply to the LOSA basins.

Figure 6.2-1. Watersheds Simulated in the Northern Everglades Regional Simulation ModelSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-4 The selected period of record, 1970 to 2005, is s lightly different from the 36-year period of record (1965 to 2000) typically used by the SFWMM. The inclusion of th e latter five years (2001 to 2005) in the NERSM period of record was driven by the de sire to use the most current climatic information available, which includes extreme events, such as Hurricanes Charlie, Frances, and Jeanne in 2004 and Hurricane Wilma in 2005.

No detailed verification was done during in itial model set-up; however, the NERSM was validated by making comparative runs with established models currently in use within the model domain: the UKISS for the Upper Kissimmee Water shed (Fan, 1986) and the SFWMM for Lake
Okeechobee and areas further south.

A series of assumptions were developed to f acilitate model set-up; these assumptions are
documented in Appendix C . Additional information on how each individual watershed was modeled is also included in this appendix.

6.2.1.1.2 Conceptualization in River Watershed Protection Plans

As mentioned in the previous section, additiona l conceptualization beyond what was done in the LOP2TP was necessary for the two river watersheds in order to simulate specific management measures outside the original NERSM domain. Fo r a more detailed description of the model setup and conceptualization for Caloosahatchee River and St. Lucie River watersheds, see Appendix C

.

Caloosahatchee River Watershed

The Caloosahatchee River Watershed is conceptua lized as a series of interconnected nodes (e.g., single or multiple basins/storage) and links (e. g., single-purpose or multi-purpose structure). A simple example of the no de-link diagrams used for the model is shown in Figure 6.2-2 . Demand and runoff in the East Caloosahatchee Basin (E CAL) and West Caloosah atchee Basin (WCAL) are very different in magnitude. Therefore, in order to better account for available water for capture by individual water management measures proposed in the CRWPP, the two basins were modeled as two separate nodes. The Caloosah atchee Estuary and the S-4 Basin were also
simulated as individual nodes. Specific management measures, su ch as reservoirs and water quality treatment features propos ed in the CRWPP, were modeled as storage nodes. The link node diagrams for all the m odel runs are included in Appendix C

.
Storage nodes are linked by single-purpose or multi-purpose water control structures. Inflow into the ECAL includes the S-77 structure, which is used for water supply, environmental, and regulatory purposes; and the S-235 structure, which discharges excess runoff from the S-4 basin. S-77 will also allow natural backflow into Lake Okeechobee when the lake stage is less than 11.5 feet (ft) National Geodetic Vertical Datu m (NGVD). This back flow component was identified as a separate outflow time series fr om ECAL (S-77BK). The ECAL and WCAL basins are connected through the S-78 structure, which controls discharge for water supply, environmental and flood control purposes. The WCAL discharges into the Caloosahatchee Estuary through S-79, which handles both deliveries to meet estuary needs and upstream excess.Section 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-5 Figure 6.2-2. Sample Node-Link Representation for CRWPP Model

Runoff generated from the ECAL and WCAL basins was applied directly to each corresponding model node as a boundary condition. These runoff ti me series were adjusted (reduced) for each alternative, in order to account for the footprint of proposed ma nagement measures (reservoirs and stormwater treatment areas) to be simulated w ithin the alternative. Agricultural and public water supply demands in ECAL and WCAL basins and environmental needs in the estuary drive water supply and environmental deliveries in th e model. Surface water demand from the Olga public water supply plant in Lee County was accounted for in the WCAL demand time series. Excesses in upstream nodes were first used to m eet water supply and environmental demands in downstream nodes. The remaining water supply need was met from Lake Okeechobee, subject to the Hybrid LOWSM cutback scheme.

In the RWPPB and alternative scenario simula tions, the proposed Comprehensive Everglades Restoration Plan (CERP) Caloosahatchee Rive r (C-43) West Basin Storage Reservoir was included. The purpose of this reservoir is to store basin excess and Lake Okeechobee regulatory releases that exceed estuary demands. During tim es of low upstream excess and absence of lake regulatory releases, the reservoir is used to meet estuary demands before any additional water is brought in from Lake Okeechobee for environmental purposes. The remaining environmental need may be met from Lake Okeechobee, as long as the lake stage is grea ter than 11.5 ft NGVD.

St. Lucie River Watershed

The St. Lucie River Watershed is conceptua lized using the same node-link approach as
Caloosahatchee River Watershed. The St. Lucie River Watershed was subdivided into four nontidal nodes (C-44, C-23, C-24, and Ten Mile Creek), and one tidal node (comprised of Basins 4,5, and 6, and South Fork, plus the tidal portion of North Fork that is outside the Ten Mile Creek Basin). The non-tidal nodes are linked to the St. Lucie Estuary via structures, S-80, S-48,Section 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-6 and S-49, respectively. The tidal no de discharges freely into the estuary without an intervening
control structure.

NERSM, as used in the LOP2TP , conceptualized the St. Lucie River Watershed as two nodes: C44 and non-C-44. The model showed that more de tail was needed in the non-C-44 model node, in order to simulate the proposed storage facilities in the different sub-basins that comprise this node. Therefore, a total of five basins were simulated in th e RWPP model runs, including C-44, C-23, C-24, Ten Mile Creek, and one tidal basin [c omprised of the North Fork (excluding Ten Mile Creek), South Fork and Basins 4, 5, and 6].

Three important time series drive this model: ba sin irrigation demands, basin runoff, and the St. Lucie Estuary target flows. Pre-processed su pplemental irrigation demands and basin runoff were associated with each basin represented in the model. Except for the C-44 basin, all runoff
and demand time series were obtained from Watershed Hydrology and Water Quality Model (WaSh) modeling (Wan and Roaza, 2003). The runo ff and demand time series for C-44 Basin (a part of LOSA), were derived from the Ag ricultural Field Scale Irrigation Requirements Simulation Water Budget (AFSIRS/WATBAL) mode l, instead of the WaSh modeling, to be
consistent with the rest of LO SA. Non-C-44 basins in the St . Lucie River Watershed are not connected directly to Lake Okeechobee and, thus , do not receive lake supplemental irrigation
deliveries from it. Backflow from the C-44 basi n into Lake Okeechobee is initiated when the simulated stages at Lake Okeechobe e drop to less than 14.5 ft NGVD.

For the RWPPB, the C-44 and Ten Mile Creek reserv oirs and stormwater treatment areas (STAs) were added as additional nodes that represent stor age facilities expected to be in place by 2015.
Both the reservoir and STA facilities in each of th ese basins were simulated as a combined unit, such that only two additional model nodes are used.

A third important time series that drives the St. Lucie River Watershed simulation is the St. Lucie Estuary target time series. This time series represents the anticipated discharges into the
St. Lucie River after features of the Indian Ri ver Lagoon-South preferred alternative are put in place. Output from the Reservoir Optimization Model (OPTI-5 that was subsequently upgraded to OPTI-6) used in Indian Ri ver Lagoon-South Final Integrated Project Implementation Report and Environmental Statement (IRL-S PIR) was the source for the St. Lucie Estuary target time
series and is referred to as NERS M operational targets for the estuar y. In order to take advantage of the increased resolution in modeling the area, the time series was parsed into each individual contributing (non-tidal) ba sin. To be consistent with the objectives of the SLRWPP, no Lake
Okeechobee releases were made in the model to meet the low-flow operational targets for the estuary.

For SLRWPP alternative formulation, a comb ined C-23/C-24 Reservoir and C-23/C-24 STA model nodes were created with associated operating rules. These features are consistent with the IRL-S PIR Recommended Plan. The multiple model node representation of non-C-44 basins
facilitates various scenarios for water transfer to occur between C-23 and C-44 Reservoir/STA, C-23/C-24 STA and Ten Mile Creek Basin, C-23 Basin and C-23/C-24 Re servoir, C-24 Basin and C-23/C-24 Reservoir, and C-23/C-24 Reservoir and C-23/C-24 STA, as specified in the IRLS PIR Recommended Plan (see Appendix C Section 2.2.6.1 for more details).Section 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-7 6.2.1.1.3 Boundary Conditions

Caloosahatchee River Watershed

The NERSM runoff/demand time series for ECAL , WCAL, and S-4 basins were obtained from the AFSIRS/WATBAL model, as used in the SFWMM modeling in support of the Caloosahatchee River (C-43) West Basin Stor age Reservoir Project. The AFSIRS/WATBAL hydrologic model is a simplified ba sin-scale water budget model and is based on the Agricultural Field Scale Irrigation Requirements Simula tion (AFSIRS) model (Smajstrla, 1990). The
AFSIRS/WATBAL model calculate s the supplemental (beyond local net rainfall and storage) demands for irrigated and non-irri gated lands and provides basin scale estimates of runoff. Output from AFSIRS/WATBAL model was used as input to SFWMM and, more recently, to the
NERSM.

A 36-year (1970 to 2005) period of record was used for this project. Even though the ECAL and WCAL were represented in the AFSIRS/WATBAL model, the calibration was performed for the
entire Caloosahatchee River basin as a whole (Wilcox and Konyha, 2003).

As a part of data pre-processing, an adju stment was done to both the ECAL and WCAL demand/runoff time series, using an assumed seepag e value of 40 cubic feet per second (cfs)/day
from east to west across S-78 stru cture. Another adjustment was made to ensure that runoff and demand did not occur on the same day, which is a requirement in the NERSM. The model did
not allow for WCAL runoff to meet ECAL dema nds (unlike AFSIRS/WATBAL), which is better representation of reality compared to a singl e Caloosahatchee River basin representation.

The Caloosahatchee River (C-43) West Basin Stor age Reservoir specifica tions were taken from the Caloosahatchee River (C-43) West Basin Stor age Reservoir Project Implementation Report. Due to the reservoir footprint, the runoff time series was adjusted internally in the NERSM by applying a factor that is defined as the ratio of the remaining c ontributing watershed area (total watershed area less the C-43 West Basin Storage Rese rvoir footprint) to the total watershed area.

S-4 Basin runoff/demands were aggregated based on estimates for Disston Water Control
District and non-Disston Water C ontrol District portions of S-4 Basin. Other input parameters, like rainfall and potential eva potranspiration for ECAL, WCAL a nd S-4 Basin, were the same as used in the AFSIRS/WATBAL modeling for Acceler8.

St. Lucie River Watershed

Except for the C-44 Basin, all runoff and dema nd time series were obtained from WaSh modeling. Because the C-44 Basin is a part of LOSA, the runoff and demand input time series
were derived from the AFSIRS/WATBAL model instead of the WaSh modeling. WaSh is a time-dependent, coupled hydrologic and hydraulic simulation model. It includes many features specifically required to simulate conditions in the St. Lucie River Watershed basins, such as irrigation demand and supply, high water table conditions, fully coupled groundwater and surface interactions, reservoirs and STAs, and flow structures.

Operational flow targets in the NERSM were assigned downstream of each contributing basin (represented as model nodes) and were establ ished using OPTI-6. The optimization modelSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-8 OPTI-6 determines the optimal sizing and operati ng rules for reservoirs in the watershed, such that the long term natural flow di stribution of stormwater discharges to the estuary is matched. It also minimizes the required capacities of the detention reservoirs, wh ile providing reliable supplemental irrigation at the required pumping levels (Wan et al., 2006).

The St. Lucie River Watershed basins demand/r unoff flow time series, as produced by WaSh, was used as an input to OPTI-6. The purpose of th is effort was to create operational flow targets for all basins, so that the NERSM could know whethe r to hold or release th e water to the estuary. By meeting these operational flow targets, the NERSM can essentially mimic OPTI-6 performance in terms of meeting its ecological/environmental goals.

6.2.1.2 Model Scenarios

Modeling tools were used to evaluate project a lternatives by comparing the modeling results to the performance measure targets. Base conditions were established to pr ovide a starting point by which relative comparisons will be made between the project alternatives. The following is a summary of the various scenarios that were mode led to determine system-wide impacts likely to be associated with implemen tation of each alternative:

• Current Base (CBASE) – This scenario includes the following assumptions:

− The conditions are represented as they existe d in the Northern Everglades Watershed in 2005;

− There are no CERP projects or LOP2TP projects in place; and

− Lake Okeechobee releases to the estuary and WCAs are based on the existing WSE regulation schedule.

• River Watershed Protection Plan Base (RWPPB) – This scenario assumes the base condition of 2015, with the follo wing projects in place:

- LOP2TP Recommended Projects: Combined Rese rvoir storage, STA storage and aquifer storage and recovery (ASR) capacity equa l to 914,000 acre-feet, 54,000 acre-feet and 66 million gallons per day, respectively. Add itional details can be found in the LOP2TP;

- Acceler8 Projects: C-43 (Caloosahatchee Ri ver) Reservoir, C-44 (St. Lucie Canal) Reservoir and STA, and A-1 (Everglade s Agricultural Area Reservoir A-1);

- Kissimmee Projects: Kissimmee River Restor ation Project and the Kissimmee River Headwaters Revitalization;

- Ten Mile Creek Reservoir in St. Lucie River Watershed; and

- Authorized MODWATER s and C-111 projects.

• Alternative Plans – Management measures were combined to develop alternative plans to meet the performance measure targets (water quantity and quality goals).Section 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-9 6.2.2 Water Quantity Performance Measures and Targets

Performance measures and performance indicator s provide a means to evaluate how well each alternative achieves the project goals. Alternative plans are spec ifically formulated to achieve the targets set for each of the performance measures (e.g., flow ra nges, limits, and distribution),
as described in Section 6.4. Each alternative is then evaluated on how efficiently and effectively it meets such performance measure targets, as discussed in Section 6.5. The performance measures and indicators utilized in the comp arison include the high discharge criteria, the salinity envelope criteria, the proposed Lake Okeechobee minimum water level criteria, and the supplemental irrigation requirements.

6.2.2.1 High Discharge Criteria

As discussed in Section 3.5, favorable maximum monthly flow (from surface water sources) for the Caloosahatchee Estuary (2,800 cfs) will provid e suitable salinity conditions to promote the development of identified valued ecosystem components (e.g., oysters and seagrass). Mean monthly flows greater than 4,500 cfs result in freshwater conditions throughout the estuary, causing severe impacts to estuarine biota [Restoration Coordination and Verification (RECOVER), 2007].

The restoration target for the hi gh discharge criteria in the Caloosahatchee Estuary are as
follows:

• Limit mean monthly flows greater than 2,800 cfs to three months or less over a 432- month period; and

• Eliminate mean monthly flows greater than 4,500 cfs over a 432-month period.

6.2.2.2 Salinity Envelope

Discharges from the watershed should be manage d to maintain a salinity range conducive to the ecological health of the Caloosahatchee Estuary. The relationship between high flows and low salinity conditions are briefly described in S ection 6.2.2.1. As discussed in Section 3.5, average monthly flows less than 450 cfs from October to July will produce high salinity conditions that
are unfavorable to estuarine biota. The restora tion target for the salinity envelope performance indicator in the Caloosahatchee Estuary is as follows:

• Eliminate mean monthly flows less than 450 cfs from October to July; and

• Limit the number of times monthly flow s exceed 2,800 cfs for three occurrences.

6.2.2.3 Target Flow Index

The Target Flow Index (TFI) reflects the idea l flow distribution to the estuary, which would result in a healthy and productive estuary. The TFI compares the modeled flow distributions against a target or desired flow distribut ion at S-79. The green line depicted in Figure 6.2-3 represents the desired flow distribution at S-79 that was derived from the EST05 time series of
flows. The TFI evaluation method calculates a co mposite score for a give n alternative scenario by adding up weighted deviations from a desired flow distribution – more specifically, a set ofSection 6.2

Caloosahatchee River Watershed Protection Plan January 2009
6.2-10 -1.121 - 4.601 0.000 TFI flow categories that characterizes EST05 (Chamb erlain, 2008). Deviation from the desired flow distribution will result in a negative TFI. The TFI progressively becomes negative as the flow deviates from the target. A value of zero signifies a perfect match to EST05.

Figure 6.2-3. Target Flow Index Criteria Graph

6.2.2.4 Lake Okeechobee Proposed Mi nimum Water Level Criterion

This criterion is being used as a performance indi cator to ensure that alternatives do not cause any adverse impacts on Lake Okeechobee minimum water levels. The target of the Lake Okeechobee proposed minimum water level perf ormance indicator allows for only one occurrence over a six-year period, when water le vels drop below 11 ft NGVD for more than 80 days.

6.2.2.5 Supplemental Irrigation Requirements

Supplemental irrigation requirements are being evaluated to ensure that the plan does not adversely affect LOSA water supply demands. This was done utilizing two water supply performance indicators. The first indicator ev aluates water supply cutback volumes during the seven worst drought years. The second indicator evaluates dema nds not met based on the entire period of record. The goal of both indicators is to ensure that “LOSA demands not met” and “cutback volumes” are equal to or better than existing conditions

.

### SECTION 6.3

WATER QUALITY ANALYSIS ME THOD AND BASE CONDITION
CHARACTERIZATIONSection 6.3

Caloosahatchee River Watershed Protection Plan January 2009 6.3-i TABLE OF CONTENTS

6.3 Water Quality Analysis Method and Ba se Condition Characterization ................... 6.3-1
6.3.1 Water Quality Spreadsheet ............................................................................... 6.3-1
6.3.1.1 Current Base Condition......................................................................... 6.3-1
6.3.1.2 River Watershed Protection Plan Base (RWPPB) Condition............... 6.3-6
6.3.1.3 Alternative Condition............................................................................ 6.3-7
6.3.2 Watershed Water Quality Characterization ...................................................... 6.3-8
6.3.2.1 Caloosahatchee River Watershed Water Quality Profile...................... 6.3-9
6.3.2.2 Sub-watershed Water Quality Profiles.................................................. 6.3-9
6.3.2.3 Benefits from Base Projects in the RWPPB Condition ...................... 6.3-12
6.3.2.4 Comparison of Flows and Loads from Sub-watersheds ..................... 6.3-12
6.3.3 Water Quality Conclusions............................................................................. 6.3-14

LIST OF TABLES

6.3-1 Water Quality Spreadsheet Example ............................................................................ 6.3-2
6.3-2 Distribution of Land-Us e Types by Sub-watershed...................................................... 6.3-4 6.3-3 Summary of Land-Use Lo ading Rates and Acreages................................................... 6.3-5 6.3-4 Summary of Average Annual Flows, TP and TN Loads and Concentrations for
Current Base................................................................................................................ 6.3 -11 6.3-5 Summary of Average Annual Flows, TP and TN Loads and Concentrations for
RWPPB....................................................................................................................... 6.3 -13

LIST OF FIGURES

6.3-1 Comparisons of Percent Average A nnual Discharge and Average Annual TP and
TN Loads from each Sub-watershed for RWPPB Condition ..................................... 6.3-14Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-1 6.3 Water Quality Analysis Method and Base Condition Characterization

This section provides an overview of the water qu ality analysis method and, based on the results of the analysis, a description of the wate r quality conditions and conclusions for the
Caloosahatchee River Watershed and each individual sub-watershed.

6.3.1 Water Quality Spreadsheet

Water quality modeling was accomplished using al gorithms in a Microsoft Excel® spreadsheet
to estimate nutrient loads and the load reductions that would result from the implementation of various management alternatives. This simp lified approach was selected because of time constraints and, more importantly, limitations in the data needed to populate a more complex, process-based model.

Watershed loading simulations were based on land- use specific total nitrogen (TN) and total phosphorus (TP) loading rates that were comp iled from various sources by Soil and Water Engineering Technology, Inc. (SWET, 2008) ( Appendix D ). As described below, calibration of the model was done using flow and nutrient concentrations measured at various structures in the river. The water quality spreadsheet is categorized by sub-watershed and the three basic water quality conditions: the Current Base (CBASE) Condition, the River Watershed Protection Plan Base (RWPPB) Condition, and th e Alternative Conditions. Table 6.3-1 shows an example of the water quality spreadsheet for TN, using Alternative 1 as a representative Alternative Condition. Similar calculations were made for TP, although fo r simplicity, these results are not shown in the table. The following sections describe the co mponents of the water qua lity spreadsheet and define the columns, the origin of the data, and how the values were calculated.

6.3.1.1 Current Base Condition

The CBASE Condition section of the water quality spreadsheet ( Table 6.3-1 ) is the first building block of the spreadsheet a nd represents the 2005 condition of the Caloosahatchee River Watershed. It summarizes the average annual di scharge (column 3a), th e average annual TP or TN load (column 3b), and the resulting average annual TP or TN concen tration (column 3c), based on the 1995 to 2005 period of record.

In determining average annual discharge and averag e annual TP or TN loads, measured data for the Caloosahatchee River (C-43 Canal) at structures S-77, S-78, a nd S-79 on the C-43 Canal were used. Daily values were available for discharge. Monthly loads were estimated by combining data from monthly water quality sample s with the discharge r ecord (i.e., daily flows were summed for the month and multiplied by the grab sample concentration).

There are insufficient data available downstream fr om S-79 for direct estimation of discharge or loads. Accordingly, simulations for the Tida l Caloosahatchee Sub-watershed and the North Coastal Basin were calibrated to flows and loads estimated in 2008 by the Florida Department of Environmental Protection (FDEP) as part of the Total Maximum Daily Load (TMDL) development process, using the Watershed Mana gement Model (WMM). Sub-basins, land uses, and loading factors in the WMM were identical to t hose used in the spreadsheet loading model.Section 6.3Caloosahatchee River Watershed Protection Plan January 20096.3-2Table 6.3-1.Water Quality Spreadsheet Example3 - Current Base (CBASE) Condition 4 - River Watershed Protection PlanBase (RWPPB) Condition1 - Sub-watershed2 - Area(acres)3a - AnnualDischarge(1)(ac-ft/yr)3b - AnnualTotalNitrogenLoad(1)(mt/yr)3c - TotalNitrogenConc.(1)(ppm)4a - LoadReduction(mt/yr)4b -RemainingDischarge(ac-ft/yr)4c -RemainingConc.(2)(ppm)4d -AdjustedRemainingLoad(2)(mt/yr)4e - LoadReductionfromCBASE(percent)S-4(5)42,504 45,698 93.0 1.65 0.0 45,698 1.65 93.0 0.0%East Caloosahatchee 198,299 232,874 460.4 1.60 0.0 232,8741.60 460.4 0.0%West Caloosahatchee 349,734 646,089 1,121.9 1.41 93.2 646,0891.29 1,028.7 8.3%Tidal Caloosahatchee 262,023 456,580 863.6 1.53 0.0 456,5801.53 863.6 0.0%Coastal 227,236 224,952 360.8 1.30 0.0 224,952 1.30 360.8 0.0%Lake Okeechobee input(6)n.a. 975,042 1,950.9 1.62 735.9 674,7001.46 1,215.0 37.7%Total for CRWPP1,079,796 1,606,192 2,899.7 1.46 93.2 1,606,192 1.42 2,806.5 3.2%Total for CRWPP, with Lake Okee.n.a. 2,581,234 4,850.6 1.52 829.2 2,280,8921.43 4,021.4 17.1%5 - Alternative 1 (Common Elements)5a - Owner-ImplementedBMPs(3)5b - Cost-ShareBMPs(4)5c - Local Projects 5d - Regional Projects 5e - Summary of Alternative 1LoadReduction(mt/yr)RemainingLoad(mt/yr)LoadReduction(mt/yr)RemainingLoad(mt/yr)LoadReduction(mt/yr)RemainingLoad(mt/yr)LoadReduction(mt/yr)RemainingLoad(mt/yr)LoadReduction(mt/yr)RemainingConcentration(2)(ppm)AdjustedRemainingLoad(2)(mt/yr)LoadReductionfromRWPPB(percent)6.9 86.1 13.0 73.1 0.0 73.1 0.0 73.1 19.9 1.30 73.1 21.4%41.2 419.3 41.8 377.5 0.0 377.5 87.2 290.2 170.2 1.01 290.2 37.0%96.7 932.0 76.0 856.0 37.5 818.5 42.9 775.6 253.1 0.97 775.6 24.6%89.4 774.2 79.9 694.2 30.0 664.2 0.0 664.2 199.3 1.18 664.2 23.1%26.0 334.8 14.7 320.0 1.3 318.8 0.0 318.8 42.0 1.15 318.8 11.6%n.a. 735.9 n.a.735.9 0.0 735.9 0.0 735.90.0 1.46 1,215.0 0.0%260.1 2,546.3 225.5 2,320.8 68.8 2,252.0 130.1 2,121.9 684.5 1.07 2,121.9 24.4%260.1 3,761.3 225.5 3,535.8 68.8 3,467.0 130.1 3,336.9 684.5 1.19 3,336.9 17.0%Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-3 Notes for Table 6.3-1: (1) CBASE conditions are average annual values and are base d on measured data for the period 1995 to 2005. Units for all columns: Flow = acre-feet per year (ac-ft/yr); Load = metric tons per year (mt/yr); Concentr ation = parts per million (ppm). (2) Where load reductions were projected to result in concentr ations less than 0.80 ppm, the remaining load was estimated by multiplying the basin flow by 0.80 ppm. (3) Owner-implemented best management practices (BMPs) are adjusted for urban pervious areas and the percentages of the BMPs that already have been implemented (30 percent for row crops, 50 percen t for ornamentals/nurseries, and percent that became citrus after 1988). (4) Cost-share BMPs are adjusted for the percentages of the BMPs that already have been implemented (percent that became urban after 1988, 30 percent for row crops, 50 percent for ornamentals/nurseries, and percent that became citrus after 1988). (5) Approximately 50 percent of the flow from S-4 basin discharges directly into Lake Okeechobee. Flows and loads shown here represent the estimated inputs to the Caloosahatchee Watershed at S-235. (6) Lake Okeechobee discharges into the Caloosahatchee Watershe d at S-77; thus the full reach of the Caloosahatchee River and Estuary are affected by inputs from Lake Okeechobee.

For the Nearshore Basin, neither sampled nor m odeled data were available for estimation of source loads or discharge. For th at area, the estimates of discha rge and load were based solely on land use acreages, as described below.

Approximately half of the flow from the S-4 Sub-watershed discharges directly into Lake Okeechobee and half discharges to the Caloosahat chee Watershed. Flows and loads used in this report represent the estimated inputs from the S- 4 Sub-watershed to the C-43 Canal at structure S-235. They were estimated from a water-balance analysis for flow and TP for the S-4 area for the period 1993 to 2004 (Burns & McDonnell, 2008) . For this report, the flow and TP discharged to the Caloosahatchee River Watershe d were estimated as 48 percent of the totals given in the Interim Draft Report on the S-4 Basi n Feasibility Study. That study did not collect TN data; so for this report, the TN load from the S-4 Sub-watershed was estimated as having an average concentration of 1.65 milligrams per liter (mg/L).

The water quality analysis method simulates the sources of flow and loads for the geographic
areas of the basins and sub-watersheds that we re described in Section 2.4. It also tracks the
sources of TP and TN loads for different land-us e types and estimates some of the source-load reductions on the basis of land-use types. B ecause the available data does not contain the necessary level of detail, a procedure was devel oped to estimate flows and loads for the basins and land-use types. These estimated flows and lo ads were then adjusted proportionally to fit the available data. This procedur e is described in the following paragraphs. Though computed for
each basin in the Caloosahatchee River Watershe d Protection Plan (CRWPP) study area, most of the tabular data has been compiled by sub-waters hed for ease of presenta tion in this report.

The Florida Land Use, Covers, and Forms System (FLUCCS) land-use categ ories, described in Section 2.4, were grouped into twenty land-use types for furt her analysis, and acreages were
summed for each basin. Table 6.3-2 shows the acreages for the land-use types for each subwatershed.

Runoff coefficients and loading-rate coefficients for TP and TN were developed for the different land-use types in the CRWPP by SWET. The SWET Report can be found in Appendix D . The loading-rate coefficients for TP and TN are shown in Table 6.3-3 . When the coefficients are multiplied by the acreages for each land-use t ype within each basin, source discharge and loadings were estimated. These coefficients we re calibrated for the reach between structure S-78 and S-79, which includes the East Caloosahatch ee and West Caloosahatchee sub-watersheds.Section 6.3Caloosahatchee River Watershed Protection Plan January 20096.3-4Table 6.3-2.Distribution of Land-Use Types by Sub-watershedS-4 East Caloosahatchee West Caloosahatchee Tidal Caloosahatchee CoastalLand-Use TypeArea(acres)Percent ofTotal AreaArea(acres)Percent ofTotal AreaArea(acres)Percent ofTotal AreaArea(acres)Percent ofTotal AreaArea(acres)Percentof TotalAreaResidential Low Density 548 1.3% 3,015 1.5%14,869 4.3% 30,11111.5% 28,321 12.5%Residential Medium Density 1,506 3.5% 3830.2% 1,758 0.5% 26,183 10.0% 3,567 1.6%Residential High Density 77 0.2% 590.0% 398 0.1% 8,5013.2% 2,418 1.1%Other Urban 2,231 5.2% 1,162 0.6% 1,873 0.5% 14,329 5.5% 3,974 1.7%Improved Pasture 797 1.9% 36,795 18.6%55,555 15.9% 21,3928.2% 2,613 1.1%Unimproved Pasture 0 0.0% 5,752 2.9% 12,736 3.6% 4,873 1.9% 466 0.2%Rangeland, Woodland Pasture 278 0.7% 10,8905.5% 31,543 9.0% 23,255 8.9% 12,165 5.4%Row Crops 0 0.0% 1,080 0.5%6,354 1.8% 1,6320.6% 591 0.3%Sugar Cane 32,932 77.5% 52,751 26.6% 2,058 0.6% 0 0.0% 0 0.0%Citrus 66 0.2% 26,593 13.4% 69,008 19.7% 824 0.3% 193 0.1%Sod 0 0.0% 289 0.1% 2,9470.8% 1,833 0.7% 0 0.0%Ornamentals 0 0.0% 16 0.0%369 0.1% 300 0.1% 175 0.1%Horse Farms 0 0.0% 140 0.1%38 0.0% 24 0.0% 0 0.0%Dairies 0 0.0% 18 0.0%0 0.0% 38 0.0% 0 0.0%Other Agriculture 325 0.8% 755 0.4%2,746 0.8% 4,8861.9% 2,197 1.0%Tree Plantations 0 0.0% 12,923 6.5%28,403 8.1% 1,103 0.4% 69 0.0%Water 717 1.7% 2,061 1.0% 3,639 1.0% 22,896 8.7% 101,055 44.5%Natural Areas 2,431 5.7% 42,467 21.4%114,598 32.8% 96,35036.8% 68,443 30.1%Transportation 330 0.8% 741 0.4%645 0.2% 2,674 1.0% 524 0.2%Communication, Utilities 268 0.6% 4080.2% 195 0.1% 820 0.3% 467 0.2%Total42,504 100.0% 198,299 100.0% 349,734 100.0% 262,023 100.0% 227,236 100.0%Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-5 Table 6.3-3. Summary of Land-Use Load ing Rates and Acreages

Loading Rate Area in Watershed

Land-Use Type Total Phosphorus

(lb/ac/yr) Total Nitrogen (lb/ac/yr) Area (acres) Percent of
Total Area

Residential Low Density 0.68 7.26 76,863 7.1%

Residential Me dium Density 1.93 10.56 33,396 3.1%

Residential High Density 4.14 15.84 11,453 1.1%

Other Urban 2.05 11.68 23,568 2.2%

Improved Pasture 1.93 14.65 117,152 10.8%

Unimproved Pasture 0.99 7.26 23,827 2.2%

Rangeland, Woodland Pasture 0.40 5.41 78,130 7.2%

Row Crops 3.45 19.80 9,656 0.9%

Sugar Cane 0.55 10.56 87,741 8.1%

Citrus 0.90 11.22 96,684 9.0%

Sod 2.79 11.88 5,070 0.5%

Ornamentals 4.00 15.84 861 0.1%

Horse Farms 2.51 21.12 202 0.0%

Dairies 12.94 26.40 56 0.0%

Other Agriculture 3.20 10.18 10,909 1.0%

Tree Plantations 0.21 4.09 42,498 3.9%

Water 0.07 1.19 130,368 12.1%

Natural Areas 0.11 2.96 324,289 30.0%

Transportation 2.28 12.14 4,915 0.5%

Communication, Utilities 0.66 7.92 2,159 0.2%

Total 1,079,796 100.0%

For East Caloosahatchee Sub-watershed, the values were adjusted to match the difference in flow
and load between structures S-77 and S-78. Fo r the S-4 Sub-watershed, flows and loads were adjusted to match the values derived from the Draft S-4 Feasibility Study. For the West Caloosahatchee Sub-watershed, the values were ad justed to match the difference in flow and
load between structures S-78 and S-79. For the Tidal Cal oosahatchee Sub-watershed and the North Coast Basin, the values were adjusted to match the values derived from FDEP’s WMM
model. For the Nearshore Basi n, which consists of tidal wa ter bodies and several offshore islands, in-basin assimilation was assumed to re duce the source flows and loads by 10 percent in lieu of more site-specific data.

Input flows and loads to the Caloosahatchee River Watershed from Lake Okeechobee at
structure S-77 contribute to the total flow and loads within the Caloosahatchee River and to the flows and loads that discharge from the Caloosah atchee River into the Caloosahatchee Estuary at
structure S-79. The measured data for net in flow at S-77 for the 1995-2005 period of record were used to represent the CBASE Condition input from Lake Okeechobee.

The values in columns 3a, 3b, and 3c of Table 6.3-1 contain the adjusted values for annual flow, load, and concentration that ar e contributed from each sub-watershed to the riverine andSection 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-6 estuarine systems. They represent the best-ava ilable estimates of flows and loads from the subwatersheds, and generally the annua l averages for the years 1995 to 2005 are used to define the CBASE. Concentration is a flow-weighted aver age and is computed by dividing total load by total flow. TP concentration is reported as pa rts per billion (ppb) or micrograms per liter (μg/L), and TN as parts per million (ppm) or milligrams per liter (mg/L).

6.3.1.2 River Watershed Protection Pl an Base (RWPPB) Condition

The water quality RWPPB Cond ition is the second building bl ock of the water quality spreadsheet, and represents the anticipated loading to the estuarine system after the implementation of several base projects. These ba se projects are presumed to be in place in the
near future and include full restoration of the Kissimmee River, including the Kissimmee River Headwaters Revitalization project, the Nort hern Everglades Lake Okeechobee Watershed Construction Project, Phase 2 Technical Plan (L OP2TP), the Caloosahatchee River (C-43) West Basin Storage Reservoir Project, and other Acceler8 projects.

The base projects include the LOP2TP project s which will affect the inflow from Lake
Okeechobee to the Caloosahatchee River Watershed at S-77. More specif ically, implementation of the projects in the LOP2TP is expected to reduce the amount of water that discharges from the Lake to the estuary and it is also expected to af fect the quality of the water that is discharged from the Lake. In regards to discharge volum es, the post-project average annual inflow was estimated at 675,000 acre-ft (ac-ft), as compared to 975,000 ac-ft in the pre-project condition. These estimates reflect the post-project flows at S-77 based on Northern Everglades Regional Simulation Model output. In regards to water quali ty, it was assumed that discharges into Lake
Okeechobee were consistent with the Lake Okeechobee phosphorus (P) TMDL of 105 metric tons (mt) (from surface inflows).

To compare discharge loads to the Caloosahatchee River, w ith and without water quality enhancements in place, two m odel scenarios were developed: 1) the base scenario, without features that improve water qual ity; and 2) the LOP2TP scenari o, which includes the features that improve water quality and meets the La ke Okeechobee P TMDL of 105 mt. The Lake Okeechobee Water Quality Model (LOWQM) was used to simulate these two scenarios. The model estimated an average lake-wide TP concen tration of 80 ppb for the LOP2TP scenario and 88 ppb for the base scenario. Total nitrogen con centrations were estimated at 1.46 ppm for the LOP2TP scenario, and 1.62 ppm for the base scenar io (James et al., 2005). Because this model simulates the lake as one completely mixed compartment, specific estimates of nutrient
concentrations at the S-77 discha rge point were not available, instead discharg e loads at S-77 were calculated with the LOWQM estimated TP and TN multiplied by the discharge flow. The
combination of reduced volume a nd reduced concentration resulted in an estimated 36 percent reduction of TP load and an estimated 38 percent reduction of TN load for discharges from Lake
Okeechobee.

The only base project within the Caloosahatchee River Watershed is the Caloosahatchee River (C-43) West Basin Storage Reservoir, whic h is an Acceler8 project to build a 10,000 acre
reservoir in the West Caloosahatchee Sub-wate rshed on the old Berry Groves site west of
LaBelle. In written co mmunication from Knight in 2008, rem oval of nutrients by mechanical and biological processes within th e reservoir was estimated to be 7.3 metric tons per year (mt/yr)Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-7 for TP and 93 mt/yr for TN. The effects of ev aporation on outflow volume and concentration
were not considered.

In Table 6.3-1 , column 4a represents the sum of the lo ad reductions from th e base projects. Column 4b represents the remaining discharge af ter implementation of the base projects, and column 4c represents the resulti ng concentrations, calculated by dividi ng total load by total flow.

The resulting concentration was then checked agai nst the minimum value that would be expected for a freshwater riverine system under natura l conditions for southern Florida. To be conservative, where simulated load reductions resu lted in a concentration less than the natural condition, the “natural-condition” concentration valu e was used to calculate the remaining load (column 4d). For this study, the “natural-conditi on” concentration for TP was estimated as 80 ppb (0.080 mg/L) and TN as 0.80 ppm (0.80 mg/L). Decisions regarding the concentrations were established in writing between Robert Chamberlin and the South Florida Water Management District (SFWMD) in April 2008. This adjustment of concentration and load for the “natural-condition” concentration is repeated in the water quality spreadsheet for all of the
alternative conditions.

The adjusted remaining load (Column 4d) shows the estimated loads from the sub-watersheds
under the RWPPB Condition. Column 4e shows the percent reduction in loads that result from the base projects, as compar ed to the CBASE Condition.

6.3.1.3 Alternative Condition

The Alternative Condition is th e third building block of the water quality spreadsheet and represents the anticipated TP and TN load redu ctions upon implementation of the alternatives. For the purposes of this discussi on, Alternative 1 was used as th e example for the water quality spreadsheet. Management measures that contribute to load reductions for Alternative 1 include BMPs, as well as local and regional management measures.

As described more fully in Section 6.4, Alterna tive 1 consists of all the ongoing or imminent projects in these watersheds (aka “common elem ents”). These projects will be included in all subsequent alternatives. Altern ative 2 contains management measures that are optimized for water quantity requirements, in addition to th e Alternative 1 projects. Alternative 3 is independent from Alternative 2 and contains management measures that are optimized for improvement of water quality, in addition to the A lternative 1 projects. Alternative 4 represents the alternative that optimizes both quality and qua ntity. It contains th e Alternative 1, 2, and 3 projects, plus a few additi onal management measures.

The Alternative Condition columns in the water quality spreadsheet are identical for each of the alternatives, except that the BMPs (columns 5a and 5b) are only included in Alternative 1. The
BMPs are tabulated for Alternative 1 and thus are implicitly included as “common elements” in all of the subsequent alternatives. Columns 5c, 5d, and 5e are included for all of the alternatives.

BMPs are described more fully in Chapter 7. Owner-implemented BMPs generally include practices that can be implemented by individual landowners without the n eed for explicit funding by the state. Cost-share BMPs generally consist of programs that require additional funding.Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-8 Estimates of removal efficiencies for various BMPs are presented in Appendix D (SWET, 2008). These estimates represent the best availabl e information based on available literature and expert opinion. For each land-use type, a percen tage of load reduction was estimated for ownerimplemented BMPs and cost-share BMPs. Estim ates were developed for TP and TN. For certain land-use types, it was presumed that so me level of BMP implementation was already in place, and the load reduction was adjusted accord ingly. For example, cost-share BMPs for row crops were estimated to reduce TN load by 30 pe rcent for the estimated 70 percent of the rowcrop lands that do not yet have cost-share BMPs in place. Load reductions, in mt/yr, thus were calculated as the product of existing load, percen t reduction, and percent of area available for reduction. The calculations were made for each land-use type and for the acreages in each basin, and the load reductions were totaled by sub-watershed. Column 5a in the water quality spreadsheet shows the load reduction and re maining load for the application of ownerimplemented BMPs, and column 5b shows the load reduction and remaining load for the subsequent application of cost-share BMPs.

The values in columns 5c and 5d contain the lo ad reductions and remaining loads for the local project management measures and the regional project management meas ures, respectively. In the water quality spreadsheet, the potential load reductions for the indivi dual local and regional management measures were totaled for each sub- watershed. Local and regional management
measures are described in Secti on 6.1, and a complete list of management measures is given in
Table 6.1-1 . The values used for removal efficiency and percent participa tion, which varied by management measure, are provided in the wate r quality and water quantity summary at the bottom of each management measure sheet ( Appendix B ). Load reductions for some management measures, such as the Urban Turf Fe rtilizer Rule, were presumed to be accounted
for in the calculations for BMP removals. Some management meas ures were developed primarily for water quantity benefits and are expected to have little or no direct effect on water quality.

The values in the remaining load columns (unde r 5e) were calculated by combining the potential load reductions from columns 5a, 5b, and 5c and subtracting them from the remaining load in the RWPPB Condition (column 4d). Th e resulting concentration was calculated from total load and discharge, as described previously, and compared to the “natural-condition” concentration. The final column under 5e shows the percent reducti on in loads that result from the alternative condition. For each alternative in the water qual ity spreadsheet, the percentage represents the
cumulative reduction in load as compared to the RWPPB Condition.

6.3.2 Watershed Water Quality Characterization

The data and results contained in the water quality spreadsheet allow for the evaluation of the relative contribution of TP and TN loadings by sub-watershed, their magnitudes, and the potential for the combinations of management measures to reduce the nutrient loadings contributed from the watershed to the estuarine system.

The CBASE Condition is intended to represent th e water quality conditions in the CRWPP study area, as they existed in 2005. Specificall y, the CBASE Condition is based on the 1995-2005 monitoring records, supp lemented by estimations of runoff and source loadings that are based on the 2004 to 2005 land-use types for the basins a nd sub-watersheds in the study area. TheSection 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-9 RWPPB Condition represents the anticipated flow s and loadings after implementation of the base projects. For the CRWPP study area, th e RWPPB Condition presumes that the LOP2TP and the Caloosahatchee River (C-43) West Ba sin Storage Reservoir will be in place.

6.3.2.1 Caloosahatchee River Watershed Water Quality Profile

The Caloosahatchee River Watershed has a tota l drainage area of a pproximately 1,080,000 acres. Large volumes of inflow from Lake Okeechobee to the watershed, by way of structure S-77 into the C-43 Canal, have a signifi cant impact on the concentrati ons and loads of TP and TN downstream and in the estuarine system. The watershed has been described more fully in
Section 2.4 and the land-use t ypes have been summarized in Tables 6.3-2 and 6.3-3

.

Estimated annual flows of 1,606,000 acre-feet and loads of 2,900 mt of TN, and 326 mt of TP are contributed by the CRWPP st udy area for the CBASE Condition ( Table 6.3-4 ). In comparison, annual inflows from Lake Okeechobee have averaged 975,000 acre-feet and annual loads of 1,951 mt of TN, and 104 mt of TP. In terms of relative contribution, as indicated by concentration, the runoff from the CRWPP study area has a higher concentration of TP than the inflow from Lake Okeechobee (165 ppb versus 87 ppb) and a lower concentration of TN (1.46 ppm versus 1.62 ppm).

At the S-79 structure, where the freshwater discharges into the Caloosahatchee Estuary, the average proportions contribute d from Lake Okeechobee inflows are 51 percent of the flow volume, 38 percent of the TP load, and 54 percent of the TN load.

If measured at Shell Point, which is at the downstream mouth of the Tidal Caloosahatchee, the average proportions contributed from Lake Okeec hobee inflows would be 41 percent of the flow volume, 26 percent of the TP load, and 43 percent of the TN load.

6.3.2.2 Sub-watershed Water Quality Profiles

The sub-watersheds in the CRWPP study area have been described more fully in Section 2.4 and the land-use types have been summarized in Table 6.3-2

. Table 6.3-4 summarizes the flows, loads, and concentrations contributed by the various sub-watersheds.

S-4 Sub-watershed - The S-4 Sub-watershed has a total drainage area of 42,500 acres, but it is estimated that only about 22,100 acres contribute discharge to the Caloosahatchee River
Watershed. The S-4 Sub-watershed is the fart hest upstream of all the sub-watersheds and contributes the least discharge and loads. Av erage annual discharge to the C-43 Canal is 45,700 acre-feet, with 14 mt of TP annua l load and 93 mt of TN. The average concentrations from the S-4 Sub-watershed, however, are the highest of all the sub-watersheds, at 241 ppb for TP and 1.65 ppm for TN.

East Caloosahatchee Sub-watershed - The East Caloosahatchee Sub-watershed lies between structures S-77 and S-78 and has a drainage ar ea of 198,000 acres, or 19 percent of the CRWPP study area. Annually, it contribu tes about 233,000 acre-feet of di scharge, 41 mt of TP, and 460 mt of TN. The average concentration is 144 pp b for TP and 1.60 ppm for TN. The average TP concentration is relatively low and the TN concentration is re latively high, compared to the overall average for the CRWPP study area.Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-10 West Caloosahatchee Sub-watershed - The West Caloosahatchee Sub-watershed lies between structures S-78 and S-79 and has a drainage ar ea of 350,000 acres, or 33 percent of the CRWPP study area. Annually, it contri butes about 646,000 acre-feet of discharge, 118 mt of TP, and 1,122 mt of TN. The average concentration is 148 ppb for TP and 1.41 ppm for TN. The average TP and TN concentrations are both relativ ely low, compared to the overall averages for the CRWPP study area.

Tidal Caloosahatchee Sub-watershed - The Tidal Caloosahatchee Sub-watershed lies between
structure S-79 and the mouth of the Caloosahatchee Ri ver at Shell Point. It has a drainage area of 262,000 acres, or 25 percent of the CRWPP study area. Annually, it contributes about 456,000 acre-feet of discharge, 118 mt of TP, and 864 mt of TN. The aver age concentration is 210 ppb for TP and 1.53 ppm for TN. The average TP and TN concentrations are both relatively high, compared to the overall av erages for the CRWPP study area.

Coastal Sub-watershed - The Coastal Sub-watershed consists of the tidal and offshore areas
that do not contribu te to the discharge at Shel l Point. It has a draina ge area of 227,000 acres, or 21 percent of the CRWPP study area. Estimat es suggest that the sub-watershed annually contributes about 225,000 acre-feet of discharge, 35 mt of TP, and 361 mt of TN. The average concentration is estimated at 125 ppb for TP and 1.30 ppm for TN. The average TP and TN
concentrations are both relatively low, compared to the overall averages for the CRWPP study

area.Section 6.3Caloosahatchee River Watershed Protection Plan January 20096.3-11Table 6.3-4.Summary of Average Annual Flows, TP and TNLoads and Concentrations for Current BaseTotal Phosphorus Total NitrogenSub-watershedContributingArea(acres)Percentof AreaforCRWPPAnnualDischarge(ac-ft/yr)Percentof TotalDischargeforCRWPPAnnualTotalLoad(mt/yr)Percentof TotalLoadforCRWPPConc.(ppb)AnnualTotalLoad(mt/yr)Percentof TotalLoadforCRWPPConc.(ppm)S-4 22,102 2.1% 45,698 2.8% 13.58 4.2% 241 93.0 3.2% 1.65East Caloosahatchee 198,299 18.7% 232,874 14.5% 41.26 12.7% 144 460.4 15.9% 1.60West Caloosahatchee 349,734 33.0% 646,089 40.2% 118.29 36.3% 148 1,121.9 38.7% 1.41Tidal Caloosahatchee 262,023 24.7% 456,580 28.4% 118.22 36.3% 210 863.6 29.8% 1.53Coastal 227,236 21.4% 224,952 14.0% 34.77 10.7% 125 360.8 12.4% 1.30Lake Okeechobee Inflow n.a. n.a. 975,042 n.a 104.46 n.a 87 1,950.9 n.a 1.62Total for CRWPP1,059,394 100.0% 1,606,192 100.0% 326.12 100.0% 165 2,899.7 100.0% 1.46Total for CRWPP above S-79 570,135 53.8% 924,660 57.6% 173.13 53.1% 152 1,675.4 57.8% 1.47Total above S-79, with LakeOkeechobeen.a. n.a. 1,899,702 n.a. 277.59 n.a. 118 3,626.3 n.a. 1.55Total for CRWPP, aboveShell Point832,158 78.6% 1,381,240 86.0% 291.35 89.3% 171 2,538.9 87.6% 1.49Total above Shell Point, withLake Okeechobeen.a. n.a. 2,356,282 n.a. 395.81 n.a. 136 4,489.9 n.a. 1.54Total for CRWPP, with LakeOkeechobeen.a. n.a. 2,581,234 n.a. 430.58 n.a. 135 4,850.6 n.a. 1.52Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-12 6.3.2.3 Benefits from Base Project s in the RWPPB Condition

As mentioned above and in Section 6.3.1.2, the RWPPB Condition presumes that the LOP2TP and the Caloosahatchee River (C-43) West Ba sin Storage Reservoir are in place.

With implementation of the LOP2TP, the annual inflows from Lake Okeechobee are expected to decrease from 975,000 to 675,000 acre-feet, annual lo ads of TP are expected to decrease from 104.5 to 66.6 mt, and annual loads of TN are exp ected to decrease from 1,951 to 1,215 mt. This represents a net decrease of 31 percent in flow, 36 percent in TP, and 38 percent in TN loads.

The Caloosahatchee River (C-43) West Basin Storage Reservoir is estimated to reduce the annual load of TP by 7.3 mt and TN by 93 mt. The reservoir will be constructed for purposes of storing water during periods of excess stream fl ow and releasing water throughout the dry season to provide adequate inflow to the estuary at S-7 9. Water quality benefits from the reservoir are expected to be minor, representing a reduction of only 2.2 percent of the TP load and 3.2 percent of the TN load from the study area.

The estimated flows and loads for the RWPPB Condition, for the watershed and by subwatersheds, are shown in Table 6.3-5 . For the CRWPP study area, the annual averages are estimated to be 1,600,000 acre-feet of flow, 319 mt of TP, and 2,806 mt of TN, corresponding to flow-weighted concentrations of 161 ppb and 1.42 ppm, respectively.

The RWPPB Condition loads are used as the basi s for computing the relative load reductions among the various alternative conditions, a nd are discussed further in Section 6.5.

6.3.2.4 Comparison of Flows and Loads from Sub-watersheds

The estimated flows and loads, by sub-waters hed, for the CBASE and RWPPB Conditions are
shown in Table 6.3-4 and 6.3-5 . The relative contributions from each sub-watershed are shown
in Figure 6.3-1 . In the figure, the bars for S-4 are higher for TP and TN than for discharge, indicating that the concentrations in S-4 are higher than the average for the other sub-watersheds. Compared to other sub-watersheds, however, th e magnitude of loads from S-4 is small. Similarly, the contributions from the East Ca loosahatchee and Coasta l sub-watersheds are relatively modest. The greate st discharge is contributed by the West Caloosahatchee Subwatershed, along with the greatest nitrogen load, but the largest P lo ad is contributed by the Tidal Caloosahatchee Sub-watershed, whic h has more urbanized areas.Section 6.3Caloosahatchee River Watershed Protection Plan January 20096.3-13Table 6.3-5.Summary of Average Annual Flows, TP andTN Loads and Concentrations for RWPPBTotal Phosphorus Total NitrogenSub-watershedContributingArea(acres)Percentof AreaforCRWPPAnnualDischarge(ac-ft/yr)Percentof TotalDischargeforCRWPPAnnualTotalLoad(mt/yr)Percentof TotalLoadforCRWPPConc.(ppb)AnnualTotalLoad(mt/yr)Percentof TotalLoadforCRWPPConc.(ppm)S-4 22,102 2.1% 45,698 2.8% 13.58 4.3% 241 93.0 3.3% 1.65East Caloosahatchee 198,299 18.7% 232,874 14.5% 41.26 12.9% 144 460.4 16.4% 1.60West Caloosahatchee 349,734 33.0% 646,089 40.2% 111.03 34.8% 139 1,028.7 36.7% 1.29Tidal Caloosahatchee 262,023 24.7% 456,580 28.4% 118.22 37.1% 210 863.6 30.8% 1.53Coastal 227,236 21.4% 224,952 14.0% 34.77 10.9% 125 360.8 12.9% 1.30Lake Okeechobee inflow n.a. n.a. 674,700 n.a. 66.58 n.a. 80 1,215.0 n.a. 1.46Total for CRWPP1,059,394 100.0% 1,606,192 100.0% 318.86 100.0% 161 2,806.5 100.0% 1.42Total for CRWPP above S-79 570,135 53.8% 924,660 57.6% 165.87 52.0% 145 1,582.1 56.4% 1.39Total above S-79, with LakeOkeechobeen.a. n.a. 1,599,360 n.a. 232.45 n.a. 118 2,797.1 n.a. 1.42Total for CRWPP, aboveShell Point832,158 78.6% 1,381,240 86.0% 284.09 89.1% 167 2,445.7 87.1% 1.44Total above Shell Point, withLake Okeechobeen.a. n.a. 2,055,940 n.a. 350.67 n.a. 138 3,660.7 n.a. 1.44Total for CRWPP, with LakeOkeechobeen.a. n.a. 2,280,892 n.a. 385.44 n.a. 137 4,021.4 n.a. 1.43Section 6.3

Caloosahatchee River Watershed Protection Plan January 2009
6.3-14 Figure 6.3-1. Comparison of Percent Average Annual Di scharge and Average Annual TP and
TN Loads from each Sub-watershed for RWPPB Condition

6.3.3 Water Quality Conclusions

The water quality Microsoft Excel® spreadsheet was used to demonstrate and compare load
reductions of TP and TN with two base conditi ons and the alternative conditions. The CBASE Condition represents the 2005 flows and loads for the watershed and its sub-watershed components. The RWPPB Condition represents the anticipated loading after several projects are implemented (see Section 6.3.1.2) and is expected to reduce the input of loads from Lake Okeechobee by 36 percent for TP and 38 percent for TN, largely due to the reduced flow
volumes into the C-43 Canal. Base projects within the CRWPP study area are not designed for water quality improvements, and are expected to reduce loads to the estuary only by two percent for TP and three percent for TN. The average annual loads contributed within the CRWPP study area under the RWPPB Condition are expected to be 319 mt for TN and 2,806 mt for TP.

The highest concentration of nutri ents is estimated to derive from the S-4 Sub-watershed, but because the discharge volume is small, the overall impact of S-4 is relatively small. The West
and Tidal Caloosahatchee sub-waters heds contribute most of the flow and loads within the study area. The West Caloosahatchee Sub-watershed contributes the largest flow volume and the largest load of TN. The Tidal Caloosahatchee Sub- watershed contributes the largest load of TP.

For the RWPPB Condition, the overall concentrat ion of TP for the CRWPP study area is 161 ppb, which is twice the expected “natural-co ndition” concentration value of 80 ppb. The
concentration of TN is estimated to be 1.42 ppm, compared to the “natural-condition” concentration value of 0.80 ppm, which likew ise leaves plenty of opportunity for the management measures to play an important role in restoring a healt hy watershed and estuary.

### SECTION 6.4

FORMULATION OF ALTERNATIVE PLANSSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-i TABLE OF CONTENTS

6.4 FORMULATION OF ALTERNATIVE PLANS......................................................... 6.4-1
6.4.1 Planning Goals....................................................................................................... 6.4-1
6.4.1.1 Water Quantity Storage Goal .................................................................... 6.4-1
6.4.1.2 Water Quality Goal ................................................................................... 6.4-1
6.4.2 Formulation Challenges......................................................................................... 6.4-2
6.4.3 Formulation of Alternatives .................................................................................. 6.4-2
6.4.3.1 Alternative 1 – Common Elements ........................................................... 6.4-3
6.4.3.2 Alternative 2 – Maximizing Water Storage .............................................. 6.4-5
6.4.3.3 Alternative 3 – Maximizing Water Quality Improvements....................... 6.4-7
6.4.3.4 Alternative 4 – Optimize Water Storage and Water Quality Improvements............................................................................................ 6.4-9

LIST OF TABLES

6.4-1 Alternative 1 Benefits by Project Scale ........................................................................ 6.4-5 6.4-2 Alternative 1 TP and TN Summary .............................................................................. 6.4-5 6.4-3 Alternative 2 TP and TN Summary .............................................................................. 6.4-7 6.4-4 Alternative 3 TP and TN Summary .............................................................................. 6.4-9 6.4-5 Alternative 4 TP and TN Summary ............................................................................ 6.4-11 6.4-6 Summary of Management Measures Associated with the CRWPP Alternatives....... 6.4-12Section 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-1 6.4 FORMULATION OF ALTERNATIVE PLANS

This section describes the four alternative plan s formulated and evaluated by the working team. Water quality and storage planning targets are identified, followed by a description of the management measures that were used as building blocks for each of the plans. Information on key components and projected performance of indi vidual alternative plans is also presented.

6.4.1 Planning Goals

The sections below reiterate the water quantity and water quality goals of the Caloosahatchee River Water Protection Plan (CRWPP). The altern ative plans were formulated to achieve these goals.

6.4.1.1 Water Quantity Storage Goal

The legislative intent of Northern Everglades and Estuaries Protecti on Program (NEEPP) finds that the expeditious implementation of the La ke Okeechobee Protection Plan and the River Watershed Protection Plans is needed to improve the quality, quantity, timing and distribution of water in the northern Everglades ecosystem, Section 373.4595(1)(h), F.S. (2007). The water quantity storage goal for the Caloosahatchee Rive r Watershed is to manage flows to meet the high discharge criteria, salinity envelope, and Target Flow Inde x (TFI) in the Caloosahatchee Estuary, as detailed below.

• The restoration target high discharge criter ia for the Caloosahatchee Estuary are as
follows:

− Limit mean monthly flows greater than 2,800 cubic feet per sec ond (cfs) to three

months or less over a 432-month period, and

− Eliminate mean monthly flows greater than 4,500 cfs over a 432-month period.

• The restoration salinity envelope target for the Caloosahatchee Estuary is as follows:

− Eliminate mean monthly flows below 450 cfs from October to July, and

− Limit the number of times flows exceed 2,800 cf s for 14 days or more to three, based on a 14-day moving average.

• The target for the TFI is to achieve a flow distribution at S-79 iden tical to the EST05. EST05 represents the preferred flow distributi on at S-79. A flow dist ribution identical to EST05 is given a TFI score of zero. Impr oving scores are represented by values approaching zero.

The basis for these goals is discussed in detail in Sections 3.5 and 6.2. Th is section identifies the storage gained with each alterna tive in acre-feet, while Section 6.5 discusses the modeling results as they specifically relate to the water quantity storage goals.

6.4.1.2 Water Quality Goal

The NEEPP legislation requires pol lutant load reductions consistent with any adopted nutrient Total Maximum Daily Loads (TMDLs) for the Caloosahatchee River Watershed as the water quality objective for the CRWPP planning process. However, during the formulation of theSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-2 CRWPP, the TMDLs were under development and ha d not yet been established for any impaired waterbody segments in the Caloosahatchee River Watershed. TMDLs for nutrients and dissolved oxygen (DO) were originally scheduled for development by September 2010. However; NEEPP directed the Florida Department of Environmenta l Protection (FDEP) to e xpedite development of
TMDLs for the Caloosahatchee River and Estu ary. Specifically, NEEPP directed FDEP to propose TMDLs for nutrients in th e tidal portions of the Caloos ahatchee River and Estuary by December 31, 2008. TMDLs for the riverine por tion of the watershed will be established subsequent to the estuarine TMDLs.

Since nutrient TMDLs did not exist during this planning process, a water quality goal of maximizing nutrient load reductions was utilized. Progress in meeting the total phosphorus (TP) and total nitrogen (TN) water qual ity goals is measured in the planning process via the water quality spreadsheet, which is discussed in detail in Section 6.3.1. This tool compiles the benefits of the various management measures and perfor mance measures for the existing conditions, the
River Watershed Protection Plan Base Conditi on, and four alternatives. Once TMDLs are established for the watershed, they will be used in future plan updates to assess water quality performance of the plan. Specifically, the TMDLs will be used to determine whether sufficient pollutant load reductions have been implemente d in the watershed to achieve the waterbody’s designated use and whether any pl an refinements are necessary.

6.4.2 Formulation Challenges

During the plan formulation process, numerous ch allenges needed to be resolved, including the challenges listed below.

• Alternative plans were developed that concur rently addressed two discrete and sometimes competing project objectives, namely TP a nd TN load reductions and water storage.

• Multiple management measures were considered for each project objective.

• TMDLs have not yet been es tablished in the Caloosahat chee River Watershed, so an interim goal of maximizing load reductions wa s used for this planning process. Once TMDLs are established in the Caloosahatchee River Watershed they will be applied in future CRWPP updates to assess water quality performance of the plan.

• Water quantity or water quality benefits fo r some management measures could not be quantified due to the nature or development stage of the projects, although water quantity or water quality benefits are anticipated. Thes e projects were included in the alternatives,
but did not contri bute to the overall TP and TN load reductions or the water storage capacity for the alternatives.

• The numerous challenges previous ly discussed in Section 3.4.

To address these challenges, a structured, systematic, and repr oducible process was identified and adopted for formulation of alternative plans.

6.4.3 Formulation of Alternatives

The alternatives were formulat ed by combining management measures from the management measures toolbox, previously discussed in Se ction 6.1.1, to meet pre-established planningSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-3 objectives. Both the CRWPP and the St. Luci e River Watershed Protection Plan (SLRWPP) have four alternatives, with the main objectives as listed below:

Alternative 1: Common elements for incor poration into all subsequent alternatives Alternative 2: Maximize water storage
Alternative 3: Maximize nutrient load reductions Alternative 4: A combination of management measures from Alternatives 1-3 intended to maximize both water storage and nutrient load reductions

Table 6.4-6 at the end of this section identifies the quantified water quality and storage benefits associated with each management measur e. The management measure sheets in Appendix B provide the methods used for determining the wate r quality and storage bene fits associated with each management measure, as determined by the working team. The following sections provide
details of the four alternatives discussed above and the associated anticip ated water quantity and water quality benefits.

6.4.3.1 Alternative 1 – Common Elements

Alternative 1 is defined as the “common elements” and is included in all s ubsequent alternatives. It includes management measures either already constructed/implemented or with construction/implementation imminent, or management measures for which construction/implementation wa s imminent pending resolution of certain issues. The management measures in Alternative 1 range from Level 1 to Level 5 (Refer to Section 6.1.1 for a description of the management measure levels).

The key management measures of Alternative 1 are listed below and categorized by the scale of the project: local, regional, and s ource control. Regional projects are designed to reduce nutrient loads from regional scale sources. Local proj ects are designed to reduce nutrient loads from
local sources. Source control projects are activities and measures that focus on capturing pollutants at the source, preventing the pollutants from leaving the site and entering other surface waters. The water storage capacity and TP a nd TN reductions for Alternative 1 management measures are also provided and summarized in Table 6.4-1

.

• Regional Projects - Alternative 1 regional projects pr ovide annual average TP and TN reductions of approximately 18.7 and 130.1 metr ic tons per year (mt/yr), respectively. Alternative 1 regiona l projects include:

− Coastal & Estuarine Land Conservation Program

− Harns Marsh Improvements – Phase I & II (East County Water Control District (ECWCD))

− Harns Marsh Improvements – Phase II Final Design (ECWCD)

− Aquifer Benefit and Storage for Ora nge River Basin (ABSORB) – ECWCD

− Spanish Creek/ Four Corners Environmental Restoration

− West Lake Hicpochee Project

− C-43 Distributed Reservoirs

− C-43 Water Quality Treatment and Demonstration Project (BOMA property)

− Hendry County StorageSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-4 • Local Projects - Alternative 1 local proj ects provide annual averag e TP and TN reductions of approximately 13.5 and 68.8 mt/yr, respective ly. Alternative 1 loca l projects include:

− Billy Creek Filter Marsh Phase I &II

− North Fort Myers Surface Water Restoration Project

− Yellow Fever Creek/ Gator Slough Transfer Facility (#208509)

− Yellowtail Structure Construction (ECWCD)

− Hendry Extension Canal Widening – Construction (ECWCD)

− Manuel’s Branch Silt Reduction Structure

− Manuel’s Branch East and West Weirs

− Caloosahatchee Creeks Preserve Hydrological Restoration

− Powell Creek Algal Turf Scrubber

− City of LaBelle Stormwater Master Plan Implementation

− Clewiston STA

− Alternative Water Storage (LOER) – Barron Water Control District

− Florida Ranchlands Environm ental Services Project

• Source Control Projects - Alternative 1 source control proj ects are anticipated to provide annual average TP and TN reduc tions of approximately 54.9 a nd 485.2 mt/yr, respectively. Alternative 1 source control projects include:

− Agricultural Best Management Practices (BMPs) – Owner Implemented, Funded Cost Share, and Cost Share Future Funding

− Urban Turf Fertilizer Rule [Lake Okeechobee Estuary and Recovery (LOER)]

− Land Application of Residuals

− Florida Yards and Neighbors

− Environmental Resource Permit (ERP) Regulatory Program

− National Pollutant Discharge Eliminati on System (NPDES) Stormwater Program

− Proposed Caloosahatchee River Watershed Regu latory Nutrient Source Control Program

− Proposed Unified Statewide Stormwater Rule

− Animal Manure Application Rule

− Application of Septage Rule

− Lake Okeechobee and Estuary Watershed Basin Rule (LOER)

− Wastewater & Stormwater Master Plans

− Farm & Ranchland Partnerships

− Comprehensive Planning – Land Development Regulations (LDR)

The water quality and storage benefits previously described are summarized by project scale in
Table 6.4-1

.Section 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-5 Table 6.4-1. Alternative 1 Benefits by Project Scale

Project Scale TP Load
Reduction 1 TN Load
Reduction 1 Storage 2

Regional Projects 18.7 mt/yr 130.1 mt/yr 46,900 ac-ft
Local Projects 13.5 mt/yr 68.8 mt/yr 1,013 ac-ft
Source Control Projects 54.9 mt/yr 485.2 mt/yr NA

1 Values are from the water quality spreadsheet described in Section 6.3.1

2 Values are a sum of the storage fo r each management measure provided in the management measure summary sheets as calculated by th e coordinating agencies.

6.4.3.1.1 Alternative 1 Water Storage Benefits

Increased storage from Alternative 1 is a sum of the storage benefits from Alternative 1 management measures (CRE10: C-43 Water Quality Treatmen t and Demonstration Project, BOMA property) and Alternative 1 management measures adopted from the Lake Okeechobee Watershed Construction Project, Phase II T echnical Plan (LOP2TP) (CRE-LO41: C-43
Distributed Reservoirs and CRE-L O92: Clewiston STA). Alternat ive 1 includes storage features that would provide an annual average surface storage capacity of approximately 47,900 acre-feet. Of the Alternative 1 storage components, the C- 43 Distributed Reservoir, a reservoir/ hydraulic restoration management measure, provided th e majority of the surface water storage.

6.4.3.1.2 Alternative 1 Nutrient Load Reductions

Table 6.4-2 below summarizes the water quality benef its from Alternative 1, as captured in the water quality spreadsheet. Alternative 1 woul d provide a total TP load reduction of 84.8 mt/yr and a total TN load reduction of 684.0 mt/yr. This would leave a Caloosahatchee River Watershed loading of 234.1 mt/yr and a concentra tion of 118 parts per billion (ppb) for TP and 2,122 mt/yr and a concentration of 1.07 pa rts per million (ppm) for TN.

Table 6.4-2. Alternative 1 TP and TN Summary

TP 1 TN 1

Current Load from Watershed (C urrent Base) 326.1 mt/yr 2,900 mt/yr Remaining Load from Watershed (River Watershed Base Condition) 318.9 mt/yr 2,806 mt/yr

Total Load Reduction for Alternative 1 2 84.8 mt/yr 684 mt/yr Remaining Load from Watershed 234.1 mt/yr 2,122 mt/yr Remaining Concentration 118 ppb 1.07 ppm

1 Values are from the water quality spreadsheet described in Section 6.3.1.

2 Total reduction may be less than the sum by project scal e in Table 6.4-1 due to the load reduction adjustment.

6.4.3.2 Alternative 2 – Maximizing Water Storage

This alternative is intended to maximize storage capacity in the Caloosahatchee River Watershed. Using Alternative 1 as a base, new management meas ures were added that wouldSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-6 provide increased storage capacity. Accordingl y, Alternative 2 consisted of all management
measures that were included in Alternat ive 1, plus the following six new features:

• Cape Coral Canal Stormwater Recovery by ASR (Level 1) – This feature overcomes water shortfalls during the dry season and provides flood attenuation during the wet season through the use of aquifer storag e and recovery (ASR) wells in the Cape Coral Canal System. The project is designed for six wells, one million gallons per day (MGD) each, to be constructed from 2007–2009. Water quality be nefits from the well construction are
estimated at a net reduction of 4.13 mt/yr for TN and 14.3 mt/yr for TP.

• Rehydrate Lee County Well Fields (south of Hwy 82) (Level 3) – This facility would redirect water from Lehigh Acres to rehydrate L ee County well fields to the south of SR 82. A total of approximately 4,000 acre-feet of stor age capacity will be provided through this project. In addition, it would provide an estimated annual average reduction of 1.27 mt/yr for TN and an assumed 0.23 mt/yr for TP as reasonable in comparison to TN.

• West Lake Hicpochee Project (Level 4) – This project comprises a reservoir and stormwater treatment area along the C-19 and C- 43 canals, degradation of berms, exotic plant removal and control. This facility could potentially provi de 43,010 acre-feet of aboveground storage capacity. It consists of two cells totaling 5,700 acres that would primarily receive flows from Fisheating Creek (v ia C-19). Because of its proximity to Lake Okeechobee, it could also be used to store lake waters, if necessary. In addition, this project is estimated to provide an annual average TN load reduction of approximately 27.6 mt/yr and a load reduction of 1.95 mt/yr for TP.

• Recyclable Water Containmen t Areas (RWCAs) (Level 4) – RWCAs act as a distributed reservoir within the agricultural lands. This project utilizes agricultural areas for temporary water storage and water quality benefits. A total of approximately 5,000 acres of storage area would be distributed equally among five s ub-regions, with 4-foot berms able to hold water up to a 2-foot depth. Water quality bene fits from the project are estimated at a net reduction of 67.5 mt/yr for TN and 14.3 mt/yr for TP.

• East Caloosahatchee Storage (Level 4) – This project comprises a series of distributed
reservoirs located in the East Caloosahatchee Basin, wh ich could potentia lly create 100,000 acre-feet of aboveground storage. The current configuration is one large reservoir with an effective area of 8,000 acres and a capacity of 70,000 acre-feet. The total water quality benefit from this project is estimated to reduce TN loading by 69.1 mt/yr and TP loading by 5.16 mt/yr.

• Recycled Water Containment Area in the S-4 Basin (Level 5) – This project would use agricultural or other lands on a rotating basi s through the S-4 Basin as temporary water storage for water quality and stor age benefits. Benefits from this concept include recycling nutrients, water storage, aquife r recharge and decreasing excessi ve flows to the estuaries. Estimated water quality benefits from this pr oject are a total load reduction of 11.8 mt/yr for TN and 2.41 mt/yr for TP.Section 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-7 6.4.3.2.1 Alternative 2 Water Storage Benefits

Increased storage from Alternative 2 is a sum of the storage benefits from the Alternative 2 management measure, CRE128: East Caloosahatch ee Storage, and the Alternative 2 management measure adopted from LOP2TP, CRE-LO40: West Lake Hicpochee Project. Alternative 2 includes storage features that would provide an annual average surface storage capacity of approximately 143,000 acre-feet. The additional projects in Alternative 2 are reservoir/hydrologic restoration features. Of the A lternative 2 storage components, the East Caloosahatchee Storage project provided th e majority of the surface water storage.

6.4.3.2.2 Alternative 2 Nutrient Load Reductions

Table 6.4-3 below summarizes the water quality benef its from Alternative 2, as captured in the water quality spreadsheet. The additional six ne w project features woul d collectively reduce TP loading by 12.1 mt/yr and TN loading by 118 mt/yr. Thus, Alternative 2 would provide a total TP load reduction of 96.9 mt/yr and a total TN load reduction of 802 mt/yr. This would leave a Caloosahatchee River Watershed loading of 222.0 mt/yr TP and 2,004 mt/yr TN, and concentration of 113 ppb and 1.02 ppm, for TP and TN respectively.

Table 6.4-3. Alternative 2 TP and TN Summary

TP 1 TN 1

Current Load from Watershed (C urrent Base) 326.1 mt/yr 2,900 mt/yr Remaining Load from Watershed (River Watershed Base Condition) 318.9 mt/yr 2,806 mt/yr

Load Reduction for Alternative 1 Common
Elements 84.8 mt/yr 684 mt/yr

Load Reduction for Additional Alternative 2 Projects 12.1 mt/yr 118 mt/yr

Total Load Reduction for Alternative 2 96.9 mt/yr 802 mt/yr Remaining Load from Watershed 222.0 mt/yr 2,004 mt/yr Remaining Concentration 113 ppb 1.02 ppm

1 Values are from the water quality spreadsheet described in Section 6.3.1

6.4.3.3 Alternative 3 – Maximizing Water Quality Improvements

This alternative plan is intended to maximize nutrient load reductions in the Caloosahatchee River Watershed. Using Alternat ive 1 as the basis, new management measures are added for
further nutrient load reduction. This plan consists of all featur es from Alternative 1, plus the following eight new management measures ranging from Levels 2 through 5:

• Cape Coral Wastewater Treatment and Stormwater Retrofit (Level 2) – This project is comprised of the implementation of the City of Cape Coral’s utility expansion program to changeover from septic systems to gravity sewe rs for wastewater treatment. In addition, the project contains funding to repl ace older stormwater inlets w ith newer inlets designed toSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-8 assist with stormwater management. Estimat ed water quality benefits are a total load reduction of 27.0 mt/yr for TN and 5.40 mt/yr for TP.

• North Ten Mile Canal Stormwater Treatment System (Level 2) – This project proposes to create a large-scale detenti on storage/treatment area in the City of Fort Myers for the
Fowler commercial corridor and easterly industrial ar eas. Upon construction, the stormwater runoff can better mimic a pre-developed hydrolog ic response condition. The projected water quality load reductions from project implementation w ould be 0.82 mt/yr for TN and 0.33 mt/yr for TP for a three-year event.

• Carrell Canal (FMCC) Water Quality Improvements (Level 2) – This project proposes to create a stormwater treatment area (STA) via diversion structures, quiescent settling ponds, and constructed marshes within the “non-play” areas of the existing golf course facility. It will work in conjunction with other stormwater treatment projects in the watershed to improve the overall water quality of Carrell Canal and stormwater discharges to the
Caloosahatchee River. Annual estimated wate r quality load reductions are 0.42 mt/yr for TN and 0.13 mt/yr for TP.

• Shoemaker-Zapato Canal Stor mwater Treatment (Level 2) – This project proposes to
install weir/control structures for peak flow attenuation through increased channel storage and the “balancing” of outfalling stormwater volumes between the Shoemaker and Zapato canal systems. The project should improve wa ter quality and reduce erosion and siltation into Billy Creek and improve stormwater disc harges to the Caloosahatchee River. Annual water quality load reductions from the project are estimate d at 0.54 mt/yr for TN and 0.14 mt/yr for TP.

• West Caloosahatchee Water Quality Treatment Area (Level 3) – This project consists of a constructed wetland designed to treat wa ter from the reservoir to reduce nutrient
concentrations from the Caloosahatchee Ri ver and nutrient loading to the downstream estuary. Total load reducti on is estimated to be 58.5 /yr for TN and 13.9 mt/yr for TP.

• Lehigh Acres Wastewater Treatment and Stormwater Retrofit (Level 3) – The purpose of this project is to install structural com ponents to slow and hold stormwater on the land, in
order to facilitate settlin g and nutrient uptake prior to discha rge into canals and ditches that discharge to the Caloosahatchee River. In addition, it should eliminate high-density septic systems, as well as the use of private wells for irrigation, which will significantly reduce potential pollutant loading. Annual estimated wa ter quality load reductio ns are estimated at 68.5 mt/yr for TN and 13.7 mt/yr for TP.

• Caloosahatchee Ecoscape Water Qu ality Treatment Area (Level 4) – This project
consists of a constructed we tland designed for optimal removal of nitrogen (N) from the Caloosahatchee River. The purpose of the project is to reduce nutrient concentrations within the Caloosahatchee River and nutrient pollutant loading to the downs tream estuary. Total
load reduction is estimated as 50.0 mt/yr for TN and 12.0 mt/yr for TP.

• Caloosahatchee Area Lakes Restorat ion (Lake Hicpochee) (Level 3) – The proposed project comprises restoring the historic lake bed of Lake Hi cpochee. The restored areasSection 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-9 would treat runoff from agricultu ral canals that currently flow into Lake Hicpochee and the Caloosahatchee River. Annual water quality lo ad reductions from the project are estimated as 100 mt/yr for TN and 24.7 mt/yr for TP.

6.4.3.3.1 Alternative 3 Water Storage Benefits

Increased storage from Alternative 3 is a sum of the storage benefits from the following Alternative 3 management measures – CRE04: Caloosahatchee Area Lakes Restoration (Lake Hicpochee), CRE11: Caloosahatchee Ecoscape Water Quality Treatment Area, and CRE13: West Caloosahatchee Water Quality Treatment Area. Alternative 3 includes additional water quality treatment facilities that would provide an annual average surface storage capacity of approximately 19,000 acre-feet. Of the Alterna tive 3 storage components, the Caloosahatchee Area Lakes Restoration (Lake Hicpochee) provide d the majority of the surface water storage.

6.4.3.3.2 Alternative 3 Nutrient Load Reductions

Table 6.4-4 below summarizes the water quality benef its from Alternative 3, as captured in the water quality spreadsheet. The additional eight new project features would collectively reduce TP loading by 29.8 mt/yr and TN loading by 266 m t/yr. Thus, Alternative 3 would provide a total TP load reduction of 114.6 mt/yr and a total TN load reduction of 950 mt/yr. This would
leave a Caloosahatchee Rive r Watershed loading of 204.2 mt/yr TP and 1,856 mt/yr TN, and concentration of 103 ppb and 0.94 ppm, for TP and TN respectively.

Table 6.4-4. Alternative 3 TP and TN Summary

TP 1 TN 1

Current Load from Watershed (C urrent Base) 326.1 mt/yr 2,900 mt/yr Remaining Load from Watershed (River Watershed Base Condition) 318.9 mt/yr 2,806 mt/yr

Load Reduction for Alternative 1 Common
Elements 84.8 mt/yr 684 mt/yr

Load Reduction for Additional Alternative 3 Projects 29.8 mt/yr 266 mt/yr

Total Load Reduction for Alternative 3 114.6 mt/yr 950 mt/yr Remaining Load from Watershed 204.2 mt/yr 1,856 mt/yr Remaining Concentration 103 ppb 0.94 ppm

1 Values are from the water quality spreadsheet described in Section 6.3.1

6.4.3.4 Alternative 4 – Optimize Water Stor age and Water Quality Improvements

This alternative plan was intended to optimize storage capacity and reduce nutrient loads in the study area. It was conceived as a hybrid betwee n Alternative 2 and 3 and essentially increases storage capacity, as well as furt hers nutrient load reduction. A ccordingly, it consists of all previous components from Alternatives 1 through 3, while adding the following four new management measures:Section 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-10 • East Caloosahatchee Water Qualit y Treatment Area (Level 3) – This project consists of a constructed wetland designed for optimal N removal from water that currently flows into Lake Hicpochee. Upon construction, the wate r will be diverted to the wetland treatment facility and then back to the Caloosahatch ee River, bypassing Lake Hicpochee. The total estimated water quality benefit from the propos ed project would be 80.1 mt/yr load reduction for TN and 19.2 mt/yr lo ad reduction for TP.

• Caloosahatchee Storage – Additional (Level 4) - The proposed projec t is located in the
Freshwater Basins of the Caloosahatchee Ri ver and could potential ly create 50,000 acre-feet of aboveground storage to meet additional demands. Estimated water quality benefits calculated for the project are a reduc tion of 58.0 mt/yr TN and 4.30 mt/yr TP.

• Wastewater Treatment Plant Upgrad e and Reclaimed Water (Level 4) – This project
will address the treatment of effluent entering the Caloosah atchee Estuary through upgrading existing wastewater treatment plants, constr ucting future planned plants with higher treatment levels, and beneficial ly distributing reclaimed water. Water quality benefits are anticipated to occur as a result of this projec t; however, the magnitude of these benefits is
undetermined.

• Fort Myers-Cape Coral Reclaimed Water Interconnect (Level 5) – This proposed project
would construct a transmission line between th e Fort Myers South Wastewater Treatment Plant and the Cape Coral Everest Parkway Wate r Reclamation Facility. This would remove the City of Fort Myers’ wast ewater discharge from the Caloos ahatchee Estuary, eliminate the need for the city to construct an injection we ll for reclaimed water disp osal, and will provide reclaimed water to the City of Cape Coral, wh ich has the necessary infrastructure for water distribution. Fort Myers would have an estimated 9 MGD reduction in flow.

6.4.3.4.1 Alternative 4 Water Storage Benefits

Increased storage from Alternative 4 is de rived from the storage benefit of CRE 128a: Caloosahatchee Storage – Additional. This reservoir/ hydraulic re storation feature would provide an annual average surface storage capacity of ap proximately 50,000 acre-feet.

6.4.3.4.2 Alternative 4 Nutrient Load Reductions

Table 6.4-5 summarizes the water quality benefits from Alternative 4, as captured in the water quality spreadsheet. The additional four new project features would collectively reduce TP loading by 23.5 mt/yr and TN load ing by 138.1 mt/yr. The projects for Alternatives 2 and 3, and the extras for Alternative 4 collectively coul d reduce TP loading by 36.1 mt/yr for TP and 326.5 mt/yr for TN. Thus, Alternative 4 would provide a total TP load reduction of 120.9 mt/yr and a total TN load reduction of 1,010.5 mt/yr. This would leave a Caloosahatchee River Watershed loading of 197.9 mt/yr TP and 1,760 mt/yr TN, and concentration of 101 ppb and 0.91 ppm, for TP and TN respectively.Section 6.4

Caloosahatchee River Watershed Protection Plan January 2009
6.4-11 Table 6.4-5. Alternative 4 TP and TN Summary

TP 1 TN 1

Current Load from Watershed (C urrent Base) 326.1 mt/yr 2,900 mt/yr Remaining Load from Watershed (River Watershed Base Condition) 318.9 mt/yr 2,806 mt/yr

Load Reduction for Alternative 1 Common
Elements 84.8 mt/yr 684 mt/yr

Load Reduction for Additional Alternative 4 Projects 36.1 mt/yr 326 mt/yr

Total Load Reduction for Alternative 4 120.9 mt/yr 1,010 mt/yr Remaining Load from Watershed 197.9 mt/yr 1,760 mt/yr Remaining Concentration 101 ppb 0.91 ppm

1 Values are from the water quality spreadsheet described in Section 6.3.1Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-12Table 6.4-6.Summary of ManagementMeasures Associated with the CRWPP AlternativesAlternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE-LO01,02,49Agricultural BMPs- OwnerImplemented, Funded Cost Share,and Cost Share Future FundingImplementation of agricultural BMPs and water quality improvement projectsto reduce the discharge of nutrients from the watershed.1√√√√CRE-LO 03Urban Turf Fertilizer Rule [LakeOkeechobee Estuary andRecovery (LOER)]Florida Department of Agriculture and Consumer Services (FDACS) rulewhich regulates the content of P and N in urban turf fertilizers to improve waterquality.1√√√√CRE-LO 04 Land Application of ResidualsSubsection 373.4595(4)(b)2.of the NEEPP requires that after December 31,2007, the FDEP may not authorize thedisposal of domestic wastewaterresiduals within the Caloosahatchee River Watershed unless the applicant canaffirmatively demonstrate that the nutrients in the residuals will not add tonutrient loadings in the watershed.1√√√√CRE-LO 05 Florida Yards and NeighborhoodsProvides education about the land-use design to the citizens by promoting theFlorida Yards & Neighborhood programs tominimize the pesticides, fertilizersand irrigation water.1√√√√CRE-LO 07Environmental Resource Permit(ERP) Regulatory ProgramThe ERP program regulates activities in,on, or over wetlands or other surfacewaters and the management and storageof all surface waters. This includesactivities in uplands that alter stormwater runoff as well as dredging and fillingin wetlands and other surface waters.Generally, the program's purpose is toensure that activities do not degrade water quality, compromise floodprotection, or adversely affect the function of wetland systems. The programapplies to new activities only, or to modifications of existing activities, andrequires an applicant to provide reasonable assurances that an activity will notcause adverse impacts to existing surface water storage and conveyancecapabilities, and will not adversely affectthe quality of receiving waters suchthat any applicable water quality standards will be violated.1√√√√CRE-LO 08National Pollutant DischargeElimination System (NPDES)Stormwater ProgramTo reduce stormwater pollutant loads discharged to surface waters, especiallyfrom existing land uses and drainage systems. This is especially true for themaster drainage systems owned and operated by cities, counties, FDOT, andChapter 298 water control districts. This also can help to reduce stormwaterpollutant loads from existing industrial sites and from new construction sites.1√√√√CRE-LO 09Coastal & Estuarine LandConservation ProgramTo protect important coastal and estuarine areas that have significantconservation, recreation, ecological, historical, or aesthetic values, or that arethreatened by conversion from their natural or recreational state to other uses(CELCP Final Guidelines, 2003)..1√√√√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-13Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE-LO 12gAlternative Water Storage(LOER) - Barron Water ControlDistrictThis project will provide 5,000 acre-feet of water storage on 6,129 acres.Includes weir construction and ditch retention to enable water qualityimprovements and reuse by growers. Water quality benefits are anticipated tooccur as a result of this project; however, the magnitude of these benefits isundetermined.1√√√√CRE-LO 15Proposed Caloosahatchee RiverWatershed Regulatory NutrientSource Control ProgramTo implement a nutrient source control program utilizing BMPs for theCaloosahatchee River Watershed. Ongoing activities include revising 40E-61Rule to reflect the requirements of the Northern Everglades Protection Act andto expand the rule boundary to include the Caloosahatchee River Watershed asdefined by the act.2√√√√CRE-LO 21Lake Okeechobee and EstuaryWatershed Basin Rule (LOER)In February 2008, SFWMD initiated rule development for an ERP basin rule.The intent is to develop specific supplemental permit criteria for new permittedprojects to demonstrate that no increase in total runoff volume will occur fromnew development that ultimately discharges to Lake Okeechobee or theCaloosahatchee or St. Lucie estuaries.3√√√√CRE-LO 40 West Lake Hicpochee ProjectProject comprises a reservoir and stormwater treatment area along the C-19 andC-43 canals, degradation of berms and exotic removal and control. This projectcould potentially create 55,090 acre-feetof above ground storage and will resultin 27.6 and 1.95 mt/yr of TN and TP, respectively.4 --√--√CRE-LO 41 C-43 Distributed ReservoirsThe project involves storage reservoirsto capture the excessrun-off. Thisproject will result in 39.4 and 2.65 mt/yr of TN and TP, respectively.4√√√√CRE-LO 63Wastewater & Stormwater MasterPlansImplement urban stormwater retrofittingprojects or wastewater projects toachieve additional nutrient reductions and water storage basin wide by workingwith entities responsible for wastewater and stormwater programs in the servicearea.4√√√√CRE-LO 64Proposed Unified StatewideStormwater RuleIntended to increase the level of nutrient treatment of stormwater from newdevelopment and thereby reduce the discharge of nutrients and excessstormwater volume. Treatment rule will be based on a performance standard ofpost-development nutrient loading that does not exceed pre-developmentnutrient loading.4√√√√CRE-LO 68Comprehensive Planning - LandDevelopment Regulations (LDR)Basin-wide work with state agencies, cities and counties to review current plansand ensure promotion of low impact design through coordinated comprehensiveplanning and growth management initiatives.3√√√√CRE-LO 87cFlorida RanchlandsEnvironmental Services Project(FRESP)The Florida Ranchlands Environmental Services Project will design a programin which ranchers in the Northern Everglades sell environmental services ofwater retention, nutrient load reduction, and wetland habitat expansion toagencies of the state and other willing buyers. Pilot project program is1√√√√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-14Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4currently underway.CRE-LO 91 Farm and Ranchland PartnershipsThere are two USDA Natural Resources Conservation Service (NRCS)programs that help farmers and ranchers keep their land in agriculture, the Farmand Ranchlands Protection Program and the Wetlands Reserve Program. Bothprograms provide funds to purchase conservation easements.4√√√√CRE-LO 92 Clewiston STAThe State of Florida currently owns 766acres of land along the southwesternboundary of Lake Okeechobee in Clewiston that can be used as a stormwatertreatment area to treat stormwater that is currently discharging to LakeOkeechobee. Water quality benefits are anticipated to occur as a result of thisproject; however, the magnitude of these benefits is undetermined.4√√√√CRE 01Recyclable Water ContainmentAreas (RWCA)Utilizes the agricultural lands for reduction of nutrient loads into theCaloosahatchee River. This project will result in 67.5 and 14.3 mt/yr of TN andTP, respectively.4 --√--√CRE 02Centralized Recycled WaterContainment Area in the S-4BasinUtilizes the agricultural or other lands for temporary storage to remove nutrientsand treat agricultural stormwater runofffrom the S-4 Basin to help reducenutrient loading to the CaloosahatcheeRiver, aquifer recharge and add atemporary back up water supply for irrigation. This project will result in 11.9and 2.41 mt/yr of TN and TP, respectively.5 --√--√CRE 04Caloosahatchee Area LakesRestoration (Lake Hicpochee)Restore historical lake bed of Lake Hicpochee using 5,300 acres withinfootprint of state-owned lands, which will treat runoff from agricultural canalsthat currently flow into Lake Hicpochee and the Caloosahatchee River. Totalload reduction is estimated as 100.4 mt/yr for TN and 24.7 mt/yr for TP.3 -- --√√CRE 05East Caloosahatchee WaterQuality Treatment AreaThe project consists of a constructed wetland designed for optimal removal ofN within Lake Hicpochee and the Caloosahatchee River, and to reduce thenutrient pollutants loading to the downstream estuary. This project will resultin 80.1 and 19.2 mt/yr of TN and TP, respectively.3 -- -- --√CRE 10C-43 Water Quality Treatmentand Demonstration Project(BOMA property)The project consists of a constructed wetland designed for optimal removal ofN from the Caloosahatchee River and toreduce the nutrient pollutants loadingto the downstream estuary. Total load reduction is estimated as 47.8 mt/yr forTN and 9.21 mt/yr for TP.3√√√√CRE 11Caloosahatchee Ecoscape WaterQuality Treatment AreaThe project consists of a constructed wetland designed for optimal removal ofN from the Caloosahatchee River and toreduce the nutrient pollutants loadingto the downstream estuary. Total load reduction is estimated as 50.0 mt/yr forTN and 12.0 mt/yr for TP.4 -- --√√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-15Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE 13West Caloosahatchee WaterQuality Treatment AreaThe project consists of a constructed wetland designed to treat water from thereservoir to reduce nutrient concentrations from the Caloosahatchee River andnutrient pollutants loading to the downstream estuary. Total load reduction isestimated as 58.5 mt/yr for TN and 13.9 mt/yr for TP.3 -- --√√CRE 18Harns Marsh Improvements,Phase I & IIConstruction of a control weir at the outlet of Harns Marsh into the OrangeRiver, which will raise water levels inHarns Marsh and create 1,450 acre-feetof storage capacity in the canal. Thisproject also includes replacement of otheroutlet structures (S-HM-2) and (S-HM-3); along with the addition of acontrollable gate structure next to the existing inlet to the South Marsh structure(S-HM-1). This project will result in 1.52 and 0.24 mt/yr of TN and TP,respectively.1√√√√CRE 19Harns Marsh Improvements,Phase II Final Design - ECWCDRepair the Able Canal weirs, replacement of structure (S-OR-1) and (S-OR1SE), and install pump station to lift water during dry period. This project couldhelp to reduce discharge into the OrangeRiver at least 20 percent for the 25-year design storm. This project will result in 0.61 and 0.09 mt/yr of TN and TP,respectively.2√√√√CRE 20Yellowtail Structure Construction- ECWCDThe Yellowtail Structure will replace an old, failing broad crest weir with a newsheet pile weir with operable gates that will allow a better control of canal waterquantity and quality, and will help onwater recharge purposes. This projectwill result in 0.32 and 0.03 mt/yr of TN and TP, respectively.2√√√√CRE 21 Hendry County StorageBuy land for additional storm water storage and treatment during the rainyseason and to provide base flows for the ECWCD’s outfalls along withadditional groundwater recharge in the dry season. This project will result in2.72 and 0.68 mt/yr of TN and TP, respectively.3√√√√CRE 22Hendry Extension CanalWidening (Construction) -ECWCDThis proposed canal widening project willhelp to address additional stormwaterstorage in the 5.5 mile section of Hendry Extension Canal. Water qualitybenefits are anticipated to occur asa result of this project; however, themagnitude of these benefits is undetermined.2√√√√CRE 29Lehigh Acres WastewaterTreatment and StormwaterRetrofitThis project consists of the installation of stormwater treatment features inLehigh Acres and updates the currentstormwater management system. Thisproject also consists of the conversion of high-density septic tanks tocentralized wastewater treatment including installation of the infrastructure fora treated wastewater reuse system. Thisproject will result in 68.4 and 13.7mt/yr of TN and TP, respectively.3 -- --√√CRE 30Aquifer Benefit and Storage forOrange River Basin (ABSORB) -ECWCDProject primarily oriented to increasestormwater storage capacity and SWLehigh Acres groundwater recharge. Thisproject will result in 3.72 and 0.37mt/yr of TN and TP, respectively.2√√√√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-16Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE 44Spanish Creek/ Four CornersEnvironmental RestorationRestore flow ways, build 400-acre deep reservoir and remove citrus grove.This project will result in 42.8 and 6.79 mt/yr of TN and TP, respectively.2√√√√CRE 45Billy Creek Filter Marsh Phase I& IIThis project includes construction of a filter marsh facility and a water controlstructure. The water control structure diverts flows into the filter marsh facility,providing additional attenuation of stormwater flows within the channel itself.The filter marsh facility will consistsof an 8-acre open water lake, 13-acrewetland marsh and incorporate/restore an existing 12-acre cypress hammock.This project will result in 2.05 and 0.51 mt/yr of TN and TP, respectively.1√√√√CRE 48Manuel's Branch Silt ReductionStructureInstall a silt reduction structure near the mouth of the creek to reduce the siltassociated with the streambank scour, erosion and degradation. This projectwill result in 0.14 and 0.11 mt/yr of TN and TP, respectively.2√√√√CRE 49Manuel's Branch East and WestWeirsThe project involves the installation of two weir water control structures withinthe existing canal. This project will result in 0.42 and 0.16 mt/yr of TN and TP,respectively.2√√√√CRE 53Caloosahatchee Creeks PreserveHydrological RestorationThis project will consist of culvert construction and plugging existing ditches toincrease the retention time on the Caloosahatchee Creeks Preserve to help in therehydration of the wetland and in the quality of water that later discharges intothe Caloosahatchee River. It is estimated that this will contribute 1,200 acres ofstorage capacity and will result in 21.8 and 5.44 mt/yr of TN and TP,respectively.2√√√√CRE 57 Powell Creek Algal Turf ScrubberThis project proposes to install a mobile unit of Algal Turf Scrubber system toremove nutrients, based on the results ofa pilot project. This project will resultin 0.06 and 0.02 mt/yr of TN and TP, respectively.2√√√√CRE 59North Fort Myers Surface WaterRestoration ProjectThe proposed management measureincludes channel improvements,construction of weirs to control runoff form Palermo and to incorporate filtermarsh to reduce contaminants. This project will result in 0.68 and 0.06 mt/yr ofTN and TP, respectively.1√√√√CRE 64Yellow Fever Creek/Gator SloughTransfer Facility (#208509)Construct an interconnection facility between the Gator Slough Canal andYellow Fever Creek to transfer the surfacewaters during the high flow periods.This project will result in 1.26 and 0.15 mt/yr of TN and TP, respectively.1√√√√CRE 69Cape Coral Wastewater Treatmentand Stormwater RetrofitThe City of Cape Coral is implementing a program that involves conversion ofseptic systems to gravity sewers. This project also includes replacement of olderstormwater inlets with the newer inlets designed to assist stormwater. Thisproject will result in 27.0 and 5.40 mt/yr of TN and TP, respectively.2 -- --√√CRE 77Cape Coral Canal StormwaterRecovery by ASRUsing aquifer storage and recovery wells in Cape Coral to overcome watershortfall during dry season and to provide flood attenuation during wet season.This project will result in 4.13 and 0.82 mt/yr of TN and TP, respectively.1 --√--√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-17Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE 121City of LaBelle StormwaterMaster Plan ImplementationThis project will include stormwater conveyance and water quality storageimprovements within the City of La Belle consisting in approximately 149 acresresulting in 34.8 and 5.80 mt/yr of TN and TP, respectively.2√√√√CRE 122Rehydrate Lee County Well Fields(south of Hwy 82)Redirecting water from Lehigh Acres torehydrate Lee County well fields to thesouth of SR 82. This project will result in 1.27 and 0.23 mt/yr of TN and TP,respectively.3 --√--√CRE 123North Ten Mile Canal StormwaterTreatment SystemStormwater storage/detention 12 acre-feet area for urban and commercial area.Estimated at 0.82 mt/yr for TN and 0.33 mt/yr for TP for 3-year event.2 -- --√√CRE 124Carrell Canal (FMCC) WaterQuality ImprovementsStormwater treatment area to contribute with 0.13 mt/yr for TN and 0.14 mt/yrfor TP reduction coming to Carrel Canal.2 -- --√√CRE 125Shoemaker-Zapato CanalStormwater TreatmentInstallation of weir/control structures to increase channel storage providingpeak flow attenuation, reducing erosion and siltation into Billy Creek. Thisproject will result in 0.54 and 0.14 mt/yr of TN and TP, respectively.2 -- --√√CRE 126Fort Myers-Cape Coral ReclaimedWater InterconnectInstallation of a 20-inch diameter transmission line from Fort Myers TreatmentPlant to Cape Coral Reclamation Treatment Plant. This will help preventdischarging 9 MGD treated water into Caloosahatchee River. Water qualitybenefits are anticipated to occur asa result of this project; however, themagnitude of these benefits is undetermined.5 -- -- --√CRE 128 East Caloosahatchee StorageConstruction of distributed reservoirs on 7500 acres of private properties. Theproject could potentially create 100,000acre-feet of above ground storage andwill result in 69.1 and 5.16 mt/yr of TN and TP, respectively.4 --√--√CRE 128aCaloosahatchee Storage -AdditionalCreation of 50,000 acre-feet of above ground storage in the CaloosahatcheeWatershed. This project will result in 58.0 and 4.30 mt/yr of TN and TP,respectively.4 -- -- --√CRE 129Wastewater Treatment PlantUpgrade and Reclaimed WaterUpgrade existing wastewater treatment plants to reduce the effluent loadings.Includes the potential for distribution as reclaimed water. Also construct futureplants to higher treatment levels. Water quality benefits are anticipated to occuras a result of this project; however, the magnitude of these benefits isundetermined.5 -- -- --√CRE 130 Animal Manure Application RuleLandowners who apply more than one ton per acre of manure must developconservation plans, approved by the USDepartment of Agriculture/NationalResource Conservation Service (USDA/NRC), that specifically address theapplication of animal wastesand include soil testing todemonstrate the need formanure application.1√√√√Section 6.4Caloosahatchee River Watershed Protection PlanJanuary 20096.4-18Alternative PlansID Management Measure Management Measure Description LevelAlt 1 Alt 2 Alt 3 Alt 4CRE 131 Application of Septage RuleFDOH rule which regulates the regarding application of septage in theCaloosahatchee and St. Lucie rivers. Entities disposing of septage within thewatersheds must develop and submit to FDOH an agricultural use plan thatlimits applications, based upon nutrient loading.1√√√√

### SECTION 6.5

ALTERNATIVE PLAN EVAL UATION AND COMPARISONSection 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-i TABLE OF CONTENTS

6.5 Alternative Plan Evaluation and Comparison............................................................... 6.5-1
6.5.1 Water Quantity.................................................................................................... 6.5-1
6.5.1.1 High Discharge Criteria............................................................................... 6.5-2
6.5.1.2 Salinity Envelope......................................................................................... 6.5-4
6.5.1.3 Target Flow Index ....................................................................................... 6.5-5
6.5.1.4 Lake Okeechobee Proposed Minimu m Water Level Criteria ..................... 6.5-6
6.5.1.5 Lake Okeechobee Service Area Irrigation Demand.................................... 6.5-7
6.5.2 Water Quality...................................................................................................... 6.5-9
6.5.2.1 Water Quality Results................................................................................ 6.5-10
6.5.3 Identification of the Preferre d CRWPP Construction Project .......................... 6.5-13

LIST OF TABLES

6.5-1a Breakdown of Flows Greater than 2,800 cfs to Estuary by Source..............................6.5-3
6.5-1b Breakdown of Flows Greater than 4,500 cfs to Estuary by Source......................6.5-6.5-34 6.5-2 Summary of Total Phosphorus Loads and Concentrations.........................................6.5-10 6.5-3 Summary of Total Nitrogen Loads and Concentrations .............................................6.5-11 6.5-4 Load Reductions Achieved by the Prefe rred Plan for Total Phosphorus and Total Nitrogen ......................................................................................................................6 .5-14

LIST OF FIGURES

6.5-1 High Discharge Crit eria Performance...........................................................................6.5-3 6.5-2 Salinity Envelope Cr iteria Performance .......................................................................6.5-5 6.5-3 Target Flow Index Performance ...................................................................................6.5-6
6.5-4 Lake Okeechobee Minimum Wa ter Level Performance ..............................................6.5-7
6.5-5 Lake Okeechobee Service Area Performance...............................................................6.5-8 6.5-6 Lake Okeechobee Supplemental Irrigation Performance .............................................6.5-9 6.5-7 Remaining Total Phosphorus Loads by Sub-watershed .............................................6.5-12 6.5-8 Remaining Total Nitrogen Loads by Sub-watershed..................................................6.5-13Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-1 6.5 ALTERNATIVE PLAN EVALUATION AND COMPARISON

Section 6.5 evaluates and compares the water quan tity and water quality re sults for Alternatives 1 through 4 of the Caloosahatchee River Wate rshed Protection Plan (CRWPP). The four
alternatives are a combination of various management measures mo re fully described in Sections 6.1, 6.4, and Appendix B.

Alternative 1 : Alternative 1 is defined as the “co mmon elements” and is included in all subsequent alternatives. Alternative 1 incl udes the Level 1 through 4 management measures for which construction or implementation were determined to be imminent by the working team. All source control management meas ures are included in Alternative 1.

Alternative 2 : Alternative 2 maximizes the surface water storage in the freshwater watershed. Six management measures were added to the common elements. Among the management measure included is the East Caloosahatchee Storage Project, potentially creating 100,000 acre-feet of above ground storage in the watershed.

Alternative 3 : Alternative 3 maximizes the total phos phorus (TP) and total nitrogen (TN)
load reductions in water from the Caloosah atchee River Watershed, again including the common elements of Alternative 1. Eight water quality management measures were incorporated in Alternative 3, including five regional projects and three additional local projects.

Alternative 4 : Alternative 4 is a compilation of Alternative 2 and Alternative 3 with three management measures added to increase storag e capacity and improve water quality in the watershed. Alternative 4 is intended to optim ize watershed storage a nd maximize TP and TN load reductions in the watershed. The three additional regional management measures are the Fort Myers-Cape Coral Reclaimed Water Interconnect, the Caloosahatchee Storage - Additional (50,000 acre-feet), and the East Ca loosahatchee Water Quality Treatment Area.

In an effort to determine the appropriate level of storage to implement within the watershed, the working team evaluated varying levels of wa tershed storage beyond what was prescribed in Alternative 2. Based on the insight gained from th is effort, the working team determined that the four additional management measures in Alternative 4 provided the most practicable water storage in the watershed needed to minimize damaging flows to the Caloosahatchee Estuary.

6.5.1 Water Quantity

One objective of the CRWPP is to improve water quantity and delivery to the Caloosahatchee Estuary by reducing the frequency and duration of harmful freshwate r releases. There are three performance measures for evaluating the plan a lternatives with respect to water quantity: the High Discharge Criteria, the Salinity Envelope Cr iteria and the Target Flow Index (TFI). The criteria are based on maintaining the ecological health of the syst em and measure total flows to the Caloosahatchee Estuary at the Franklin Lo ck and Dam structure (S-79). The CRWPP only
addresses the watershed contribution to the es tuary. Lake Okeechobee discharges were
addressed in the Lake Okeechobee Watershed Cons truction Project, Phas e II Technical Plan (LOP2TP).Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-2 6.5.1.1 High Discharge Criteria

The target for the ecology-based high discharge criteria is three or fewer occurrences of mean monthly flows greater than 2,800 cubic feet per second (cfs) a nd no occurrences of mean monthly flows over 4,500 cfs for the model simula ted 36-year period of record (1970 to 2005). The basis for the High Discharge Cr iteria is discussed in detail in Section 6.2. The following sections present the Northern Everglades Regi onal Simulation Model (NERSM) results for the high discharge criteria and evaluate and compare the performance of the four alternatives relative
to the criteria.

6.5.1.1.1 High Discharge Criteria Results

The performance of the base cond itions and the four alternatives compared to the high discharge criteria target are provided in Figure 6.5-1 . The left bars represent a tally of the mean monthly flows greater than 2,800 cfs and the right bars represent a tally of th e mean monthly flows greater than 4,500 cfs.

Under the RWPPB condition, discharges exceed ing 2,800 cfs decrease d by 31 percent and discharges exceeding 4,500 cfs decreased by 43 percent compared to the CBASE Condition. These improvements are from the base projects included in the RWPP B Condition, including the
LOP2TP Preferred Alternative and the C-43 Reservoir.

All of the alternatives showed improvement in reducing the number of exceedances compared to the RWPPB Condition. As expected, Alternative 4 showed the greatest improvement for both flow threshold values, reducing the number of wa tershed discharges greater than 2,800 cfs to 41 and reducing the number of discha rges greater th an 4,500 cfs to 16.

The implementation of the alternatives reduced the occurrences of total basin and Lake Okeechobee flows greater than 2,800 cfs by 7 percen t to 20 percent, from the RWPPB shown in Figure 6.5-1 . The number of occurrences of total discharges greater than 4,500 cfs also
decreased from the RWPPB condition to all four alternatives by about 5 percent to 24 percent.Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-3 Figure 6.5-1. High Discharge Criteria Performance

Tables 6.5-1a and 6.5-1b further divide each of the exceedances depicted in Figure 6.5-1 by its source. This is important, since this plan’s obj ective is to address the watershed contribution to the estuary. Lake Okeechobee discharges were a ddressed in the LOP2TP. Identifying the source
of water that contributes to the exceedances of the High Discharge Criteria helps to focus the management measures on this objective. When considering the Caloosahatchee River Watershed contribution only, the four alternatives reduced the number of discharges greater than 2,800 cfs by 21 percent to 39 percent and the occurrences of discharges greater than 4,500 cfs by 14 percent to 43 percent.

Table 6.5-1a. Breakdown of Flows Greater than 2,800 cfs to Estuary by Source (Number of Months out of 432 Total Months of Simulation (1970-2005 period of record))

Discharges greater than 2,800 cfs CBASE RWPPB ALT1 ALT2 ALT3 ALT4

Caloosahatchee River Watershed 48 33 26 22 26 20

Lake Okeechobee 21 5 7 7 7 8

Caloosahatchee River Watershed and Lake
Okeechobee Combined 11 17 16 18 18 16

TOTAL 80 55 49 47 51 44Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-4 Table 6.5-1b. Breakdown of Flows Greater than 4,500 cfs to Estuary by Source (Number of Months out of 432 Total Months of Simulation (1970 to 2005 period of record))

Discharges greater than 4,500 cfs CBASE RWPPB ALT1 ALT2 ALT3 ALT4

Caloosahatchee River Watershed 10 7 6 5 5 4

Lake Okeechobee 5 1 2 1 2 1

Caloosahatchee River Watershed and Lake
Okeechobee Combined 22 13 12 11 13 11

TOTAL 37 21 20 17 20 16

6.5.1.2 Salinity Envelope

The salinity envelope ta rget is the second CRWPP water qua ntity performance measure. The restoration salinity envelope targets for the Ca loosahatchee Estuary eliminate the occurrence of mean monthly flows less than 450 cfs from October to July, and limit the number of times monthly flows exceed 2,800 cfs to three occurren ces. Meeting the mean monthly flow targets will ensure that the salinity envelope targets are met.

Meeting the salinity envelope target will maintain desirable salinity levels in the Caloosahatchee Estuary conducive to the estuary’s ecologic hea lth. Like the High Discharge Criteria, this performance measure considers both the quan tity and duration of discharges to the Caloosahatchee Estuary from the Caloosahatchee River Watershed.

6.5.1.2.1 Salinity Envelope Results

Figure 6.5-2 illustrates the number of times the salinity envelope criteria are not met for the Caloosahatchee Estuary based on modeled mean m onthly flows for the period of record (top chart), and the number of consecutive months when exceedances occurred (bottom chart). On the top chart, the bars on the left indicate the number of months the average surface water flows were less than 450 cfs, and the ba rs on the right indicate the numbe r of months the average flow
from the Caloosahatchee River Watershed exceed ed 2,800 cfs. On the bottom chart, the numbers on the left of each column represent the number of times the salinity envelope low flow criterion was not met for consecutive months, and the numbers on the right of each column represent the same for the salinity envelope high flow criterion.

As can be seen in Figure 6.5-2, Alternative 4 resulted in a 98% improvement over current conditions in regards to the salinity envelope low flow criterion, re ducing the number of exceedances from 189 to 4. In addition, Alterna tive 4 resulted in a 66 percent reduction (from 55 to 44) in the number of exceedances of the salinity envelope high flow criterion, whereas
Alternative 1 resulted in a reduction of only 33 percent (from 55 to 49).Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-5 Figure 6.5-2. Salinity Envelope Criteria Performance

6.5.1.3 Target Flow Index

TFI was the third CRWPP water quantity perfor mance measure. TFI compares the modeled
flow distributions to a desired flow distribution. Deviatio n from the desired flow distribution will result in a negative TFI. The TFI becomes pr ogressively negative as the flow distribution deviates further from the targeted distribution. The goal is to have a TFI value of zero, which would indicate a perfect match of the flow distribution corres ponding to the ecologically-based target flow time series, EST05.

6.5.1.3.1 Target Flow Index Results

Figure 6.5-3 displays the flow distribution graph of th e base conditions and the alternatives, as
well as the TFI score for EST05. The EST05, which is depicted by the green line, is the desired condition or target flow distribution and therefor e has a TFI of zero.

As expected, the TFI for the RWPPB Condition is closer to the desired value of zero at –0.121, an improvement from the CBASE Condition by 76 percent. All of the alternatives showed improvement in reaching the desired flow distri bution when compared to the RWPPB Condition.
The flow distribution for the alternatives matc hed the EST05 flow distribution better than the
distribution for the RWPPB Condition. The corres ponding TFI scores for th e alternatives were closer to the EST05 by 35 percent to 15 per cent compared to the RWPPB Condition, withSection 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-6 Alternative 4 being the cl osest to EST05 with a score of -0.733. Alternative 4 results in an 84 percent improvement over current conditions.

Figure 6.5-3. Target Flow Index Performance

6.5.1.4 Lake Okeechobee Proposed Minimum Water Level Criteria

Performance indicators were used to measure how an alternative may impact, either directly or indirectly, other water relate d needs of the region. One pe rformance indictor in the
Caloosahatchee River Watershed is the Lake Okeechobee minimum water levels. The target
minimum water level condition for Lake Okeechob ee allows for only one occurrence over a sixyear period when water levels drop below 11 feet National Geodetic Verti cal Datum (NGVD) for more than 80 days. The model results are provided in Figure 6.5-4. The RWPPB and all of the
CRWPP alternatives met the Lake Okeechobee mi nimum water level criteria, with only one
occurrence when the lake’s water levels were le ss than 11 feet NGVD for greater than 80 days. TFI
0000
-4.601
-1.121
-0.948
-0.804
-0.954

- 0.733Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-7 Figure 6.5-4. Lake Okeechobee Minimum Water Level Performance

6.5.1.5 Lake Okeechobee Service Area Irrigation Demand

Another CRWPP performance indicator is to ensure that the plan does not adversely affect the Lake Okeechobee Service Area (LOSA) water suppl y demands. The water supply impact of the
RWPPB and each of the alte rnatives are shown in Figure 6.5-5 . All alternatives were evaluated to determine their impact on Lake Okeechobee’ s capacity to meet Lake Okeechobee Service Area (LOSA) water supply demands by using the most severe seven water years within the period of record. Alternative 4 provided the greatest reduction in demand cutback volumes. The
additional reductions in Water Year 2001 cutbacks with Alternative 4 comp ared to Alternatives 1, 2, and 3 are a likely result of additional st orage in the Caloosahatchee River Watershed reducing demands on Lake Okeechobee.Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-8 Figure 6.5-5. Lake Okeechobee Service Area Performance

Figure 6.5-6 shows the sources and volumes of water supplies (top two bar charts) and the mean annual percentage of water suppl y demands not met for the Ever glades Agricultural Area and other LOSA area (bottom two bar charts), for the same seven water years with the most severe LOSA water supply cutbacks. All alternatives sh owed reduction in cutbac ks relative to RWPPB, with Alternative 4 providing the lowest cutback volume and/or percentage.Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-9 Figure 6.5-6. Lake Okeechobee Supplemental Irrigation Performance

6.5.2 Water Quality

The Northern Everglades and Estuaries Pr otection Program (NEE PP) in Section 373.4595, Florida Statutes (F.S.) require s the CRWPP to contain an imple mentation schedule for pollutant load reductions consistent with any adopted nu trient Total Maximum Daily Loads (TMDLs) and in compliance with applicable state water qual ity standards. The Fl orida Department of Environmental Protection (FDEP) was devel oping TMDLs for the Caloosahatchee River Watershed during the formulation of the CRWPP and as a result, an interim water quality goal was used by the coordinating agencies to maximu m nutrient load reducti ons. NEEPP requires the CRWPP to be updated every three years. Therefore, the water quality goals will be updated in the three-year update of the CRWPP to include any established TMDLs in the Caloosahatchee
River Watershed.

The working team also considered estimated na tural background concentrations of TP and TN against which all alternative condition concentr ations were then checked. The “natural
condition” was based on the mini mum value that would be expect ed for a freshwater riverine system under “natural conditions” for southern Flor ida. For this study, the natural background concentration for TP was estimated as 80 parts per billion (ppb) (0.080 mg/L) and TN as 0.80 parts per million (ppm) (0.80 mg/L). Decisions re garding the concentrations were established in writing between Robert Chamberlin and the South Florida Water Management District (SFWMD) in April 2008.Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-10 The water quality evaluation method was describe d in Section 6.3. The base projects that influence anticipated TP and TN loading to the Caloosahatchee Estuary are: the C-43 West Basin Storage Reservoir and implementation of the LOP2TP.

6.5.2.1 Water Quality Results

The summaries of TP and TN load reductions are provided in Tables 6.5-2 and 6.5-3

, respectively. The range of tota l average annual load reductions fr om the alternatives compared to the RWPPB Condition is 27 to 38 percent (84. 8 and 121.0 mt/yr) TP and 24 to 36 percent (684 and 1,011 mt/yr) TN.

Each of the four alternatives provides a reduction in annual TP and TN loads compared to the CBASE and RWPPB conditions, with Alternativ e 4 achieving the maximum load reductions.
The load reductions from the Caloosahatchee Rive r Watershed represent water quality benefits from the CRWPP projects only. Alternative 4 resu lted in a 39 percent reduction in TP loading and a 38 percent reduction in TN loading from the Caloosahatchee River Watershed. With Alternative 4, the combined aver age annual TP and TN loading was reduced 39 percent for TP and 38 percent for TN compared to the CBASE Condition, and 31 percent for TP and 25 percent for TN compared to the RWPPB Condition.

For the load contributed from Lake Okeechobee and the Caloosahatchee River Watershed, the total load reduction of 38 percent for TN has resu lted in a remaining load and concentration of 3,011 mt and 1.08 ppm, respectively. Similarly, the total load reduction of 39 percent for TP has resulted in a remaining load and concentration of 265 mt and 94 ppb, respectively. Remaining TP and TN concentrations are higher than th e natural background concen trations, although to a much lesser extent than under the CBASE and RWPPB conditions. The major focus of management measures implemented for nutrient re ductions in the watershed is TN treatment, especially in the West, East, and Tidal Caloos ahatchee sub-watersheds. These sub-watersheds are major contributors of high TN levels, as discussed below and also in Section 6.3.2.4.

Table 6.5-2. Total Phosphorus Load Reductions

Load Reduction (%) Total Phosphorus Annual Load (mt/yr) Concentration (ppb) RWPPB
Condition 1 CBASE
Condition 2

Lake Okeechobee 66.6 80 n.a. 36%

Caloosahatchee River
Watershed 318.9 161 n.a. 2% RWPPB
Condition

Combined 385.4 137 n.a. 10%

Lake Okeechobee 66.6 80 0% 36%

Caloosahatchee River
Watershed 234.1 118 27% 28% Alt 1

Combined 300.6 107 22% 30%

Lake Okeechobee 66.6 80 0% 36%

Caloosahatchee River
Watershed 222.0 113 30% 32% Alt 2

Combined 288.6 103 25% 33%Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-11 Load Reduction (%) Total Phosphorus Annual Load (mt/yr) Concentration (ppb) RWPPB
Condition 1 CBASE
Condition 2

Lake Okeechobee 66.6 80 0% 36%

Caloosahatchee River
Watershed 204.2 103 36% 37% Alt 3

Combined 270.8 96 30% 37%

Lake Okeechobee 66.6 80 0% 36%

Caloosahatchee River
Watershed 197.9 101 38% 39% Alt 4-
Preferred
Plan Combined 264.5 94 31% 39%

1 Percent load reduction compared to RWPPB Conditi on – only applies to Alternatives 1 through 4.

2 Percent load reduction compared to CBASE Conditi on – only applies to Alternatives 1 through 4.

Table 6.5-3. TN Load Reductions

1 Percent load reduction compared to RWPPB Conditi on – only applies to Alternatives 1 through 4.

2 Percent load reduction compared to CBASE Conditi on – only applies to Alternatives 1 through 4.

As discussed in Section 6.3.2.4, the West and Ti dal Caloosahatchee sub-watersheds were identified “hot spots” (sub-watersheds with disproportionately high annual TN loads and concentration); therefore, they were targeted for water quality management measures. The focused water quality efforts applied to these sub-watersheds are highlighted in Figures 6.5-7
and 6.5-8 (the reduction of height in the bars for West and Tidal Caloosahatchee subLoad Reduction (%) Total Nitrogen Annual
Load (mt/yr) Concentration (ppm) RWPPB
Condition 1 CBASE
Condition 2

Lake Okeechobee 1,215 1.46 n.a. 38%

Caloosahatchee River Watershed 2,806 1.42 n.a. 3% RWPPB
Condition

Combined 4,021 1.43 n.a. 17%

Lake Okeechobee 1,215 1.46 0% 38%

Caloosahatchee River Watershed 2,122 1.07 24% 27% Alt 1

Combined 3,337 1.19 17% 31%

Lake Okeechobee 1,215 1.46 0% 38%

Caloosahatchee River Watershed 2,004 1.02 29% 31% Alt 2

Combined 3,219 1.15 20% 34%

Lake Okeechobee 1,215 1.46 0% 38%

Caloosahatchee River Watershed 1,856 0.94 34% 36% Alt 3

Combined 3,071 1.09 24% 37%

Lake Okeechobee 1,215 1.46 0% 38%

Caloosahatchee River Watershed 1,796 0.91 36% 38% Alt 4 -
Preferred
Plan Combined 3,011 1.08 25% 38%Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-12 watersheds). Remaining loads to the estuary fr om the West Caloosahatchee Sub-watershed were reduced by 38 percent for TN and 43 percent for TP. Similarly, from the Tidal Caloosahatchee Sub-watershed remaining loads were reduced 34 percent for TN and 36 percent for TP. Although not as large in magnitude, loads from the East Caloosahatchee Sub-watershed were significant; water-quality efforts were estimated to reduce the annual loads by 50 percent for TN and 44 percent for TP.

Total Phosphorus (TP)
Load Results

0.0 20.0 40.0 60.0 80.0 100.0 120.0 140.0Remaining TP (mt/yr) S-4 East Caloos.

West Caloos. Tidal Caloos.
Coastal Lake Okee.

S-4 13.6 13.6 11.3 8.9 11.3 8.9

East Caloos. 41.3 41.3 23.0 23.0 23.0 23.0

West Caloos. 118.3 111.0 73.9 68.2 63.8 63.8

Tidal Caloos. 118.2 118.2 94.7 90.8 80.0 76.1

Coastal 34.8 34.8 31.2 31.2 26.2 26.2

Lake Okee. 104.5 66.6 66.6 66.6 66.6 66.6 Current Base

Conditions RWPP Base
Conditions Alternative 1 Alternative 2 Alternative 3 Alternative 4

Figure 6.5-7. Remaining Total Phosphorus Loads by Sub-watershedSection 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-13 Total Nitrogen (TN)
Load Results

0.0 500.0 1,000.0 1,500.0 2,000.0 2,500.0Remaining TN (mt/yr) S-4 East Caloos.

West Caloos. Tidal Caloos.
Coastal Lake Okee.

S-4 93.0 93.0 73.1 61.2 73.1 61.2

East Caloos. 460.4 460.4 290.2 229.8 229.8 229.8

West Caloos. 1,121.9 1,028.7 775.6 748.6 667.1 637.6

Tidal Caloos. 863.6 863.6 664.7 645.8 592.5 573.6

Coastal 360.8 360.8 318.8 318.8 293.8 293.8

Lake Okee. 1,950.9 1,215.0 1,215.0 1,215.0 1,215.0 1,215.0 Current Base

Conditions RWPP Base
Conditions Alternative 1 Alternative 2 Alternative 3 Alternative 4

Figure 6.5-8. Remaining Total Nitrogen Loads by Sub-watershed

6.5.3 Identification of the Preferred CRWPP Construction Project

NEEPP requires the CRWPP to contain an implem entation schedule for pollutant load reductions consistent with any adopted nutrient TMDLs and a pplicable state water quality standards, and to consider and balance water supply, flood control, estuarine salinity, aquatic habitat, and water quality considerations when assessing curr ent water management practices within the
Caloosahatchee River Watershed. Both TP and TN load reduction from watershed flows to the Caloosahatchee Estuary and additio nal storage capacity in the Caloosahatchee River Watershed is required to achieve the restoration goals for the Caloosahatchee Estuary.

Each alternative was evaluated for its perfor mance at reducing damaging discharges to the Caloosahatchee Estuary and TP and TN loads while maintaining existing levels of water supply. Alternative 4 was selected as the plan that best met the legislative intent of NEEPP. Alternative 4 is referred to as the preferred CRWPP or the preferred Plan from this point forward.

The preferred Plan achieved a tota l load reduction of 38 percent fo r TN and 39 percent for TP, as
shown in Table 6.5-4 . These results reflect the “big picture” benefi ts provided by implementation of the LOP2TP and the CRWPP. Th e load reductions to the estuary achieved by each plan are also included in Table 6.5-4 . It should be noted that th e total load reduction of 39 percent for P has resulted in a re maining load and concentration of 265 metric tons (mt) and 94 ppb, respectively. On the other ha nd, the total load reduction of 38 percent for N has resulted in remaining load and concentration of 3,011 mt and 1.08 ppm, respectively. However, based on the current assessment, it appear s that excessively high N leve ls throughout the watershed poseSection 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-14 the greatest water quality challenge. Theref ore, the major focus of management measures implemented for nutrient reductions in the waters hed is N treatment, especially in the West Caloosahatchee Sub-watershed, which is a major contributor of high N le vels. Total phosphorus and total nitrogen load reduction performance will be revisited once the TMDLs are formally adopted by FDEP, which will provide specif ic loading rates, co mpliance locations, and compliance methodology.

Table 6.5-4. Load Reductions Achieved by the Preferred Plan for Total Phosphorus and Total Nitrogen

Total Phosphorus Total Nitrogen

Total Load Reduction 1 39% 38%

Watershed Load Reduction 2 38% 36%

Lake Okeechobee Load Reduction 3 36% 38%

Resulting Load 265 mt 3,011 mt

Resulting Concentration 94 ppb 1.08 ppm

1 Total load reduction from Lake Okeechobee and Caloosahatch ee River Watershed compared to the CBASE Condition

2 Load reductions only from the Caloosahatchee River Watershed compared to the RWPPB Condition

3 Load reductions only from the Lake Okee chobee compared to the CBASE condition

In addition to the water quality benefits mentioned above, implementation of the preferred Plan is anticipated to result in the following water quality and water quantity benefits:

Water Quantity

• Construction of approximately 36,000acres of reservoirs and over 15,000 acres of Stormwater Treatment Areas and and Water Quality Treatment Areas;

• Providing approximately 400,000 acre-feet of water storage within the Caloosahatchee River Watershed;

• Over 50 percent reduction of the occurre nces of flows between 2,800 and 4,500 cfs from current conditions;

• Over 60 percent reduction in flows greater than 4,500 cfs from current conditions;

• A 98 percent improvement over current condi tions for flows less than 450 cfs;

• An 84 percent improvement over current c onditions towards the achievement of the Target Flow Index; and

• Reduction in the percentage of months with detrimental high or low flows from 62 percent to 11 percent.

Water Quality

• Implementation of BMPs on more than 430,000 acres of agricultural lands and 145,000 acres of urban lands;

• Completing regulatory rule re visions (ERP and Regulatory Nutrient Source Control Rule revisions);Section 6.5

Caloosahatchee River Watershed Protection Plan January 2009
6.5-15 • Construction of approximately 15,000 acres of Stormwater Treatment Areas and Water Quality Treatment Areas; and

• Restoring more than 2,000 acres of we tlands and natural areas within the
Caloosahatchee River Watershed.

### CHAPTER 7

CALOOSAHATCHEE RIVER WATE RSHED POLLUT ANT CONTROL
PROGRAMChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-i TABLE OF CONTENTS

7.0 CALOOSAHATCHEE RIVER WATERSHED POLLUTANT CONTROL PROGRAM .

.............................................................................................................................. ............7-1
7.1 Non-Point Source Best Ma nagement Practices ........................................................... 7-2
7.1.1 South Florida Water Management District Nutrient Source Control Programs ....7-2
7.1.1.1 Environmental Resource Permit Program ......................................................7-2
7.1.1.2 Proposed Caloosahatchee River Waters hed Regulatory Nutrient Source Control Program............................................................................................. 7-3
7.1.2 Florida Department of Agriculture and Cons umer Services Nutrient Source Control Programs................................................................................................................7-4
7.1.2.1 Agricultural Best Manageme nt Practices Program ........................................7-4
7.1.2.2 Animal Manure Application Rule ..................................................................7-5
7.1.2.3 Urban Turf Fertilizer Rule.............................................................................. 7-6
7.1.3 Florida Department of Environmental Protection Pollutant Source Control Programs................................................................................................................7-6
7.1.3.1 Stormwater and Wastewater Infrastructu re Updates and Master Planning....7-6
7.1.3.2 Municipal Separate Storm Sewe r System Permit Program............................7-9
7.1.3.3 Comprehensive Planning – Land Development Regulations.......................7-11
7.1.4 Other Pollutant Source Control Programs ...........................................................7-11
7.1.4.1 Application of Septage – Senate Bill 392/2007 changes to Section 373.4593,
Florida Statues ............................................................................................. 7-11
7.1.4.2 Florida Ranchlands Environm ental Services Project ...................................7-12
7.1.4.3 Florida Yards and Neighborhoods Program.................................................7-12
7.2 Summary.................................................................................................................... 7-12

LIST OF TABLES

7-1 Point Sources in Tidal Caloosahatchee River.................................................................. 7-8 7-2 Municipal Separate Storm Sewer Syst em Permittees in the Tidal Caloosahatchee
Watershed ...................................................................................................................... 7-10Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-1 7.0 CALOOSAHATCHEE RIVER WATE RSHED POLLUTANT CONTROL
PROGRAM

Pollutant source control is integral to the success of any water resource protection or restoration program. Source control programs in the Cal oosahatchee River Watershed are evolving and expanding through cooperative and complementar y efforts by the Florida Department of Environmental Protection (FDEP), the Florida Department of Agriculture and Consumer Services (FDACS), and the S outh Florida Water Management District (SFWMD). The
Caloosahatchee River Watershed Pollutant Contro l Program is designed to be a multi-faceted approach to reducing pollutant loads. The program includes improving the management of pollutant sources within the watershed through implementati on of regulations and best management practices (BMPs) and developm ent and implementation of improved BMPs focusing on nitrogen (N) and phosphorus (P). Th e Northern Everglades and Estuaries Protection Program (NEEPP) legislation [Section 373.4595, Florid a Statutes (F.S.) (2007)] further refines the responsibilities of the coordina ting agencies to achieve the obj ectives of the Caloosahatchee River Watershed Protection Program (CRW PP) on an expedited basis, including:

• Implementation of non-point source BMPs on agricultural and non-ag ricultural lands to ensure that the amount of nutrients discharged offsite are minimized to the greatest possible extent;

• Coordination with local governments to im plement the nonagricultural, nonpoint-source BMPs within their resp ective geographic boundaries;

• Assessment of current water management practices within the watershed and development of recommendations for stru ctural, nonstructur al, and operational improvements that consider and balance water quality and s upply, flood control, estuarine salinity, and aqua tic habitat considerations;

• Ensuring that domestic wastewat er residuals within the Caloosahatchee River Watershed
do not contribute to nutrient loadings in the watershed;

• Coordination with the Florida Department of Health (FDOH) to ensure that septage disposal within the watershed is under an approved agricultural use plan, limiting applications based on nutrien t loading limits established in the proposed revisions SFWMD’s 40E-61 Regulatory Nutrie nt Source Control Program;

• Ensuring that entities utilizing land-appli cation of animal manure develop a resource management system level conservation plan;

• Utilization of alternative and innova tive nutrient control technologies;

• Utilization of federal programs that offer opportunities for water quality treatment, including preservation, restor ation, or creation of wetlands on agricultu ral land; and

• Implementation of a source control monito ring program to measure the collective performance and progress of the coordinating agencies’ pr ograms, to support adaptive management within the programs, to identify priority areas of water quality concern and BMP optimization, and to provide data to evaluate and enhance performance of
downstream treatment facilities.

Source control programs are anticipated to be implemented through a phased approach based on identified priority areas of water quality concern.Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-2 7.1 Non-Point Source Best Management Practices

Nutrient source controls refer to activities and m easures (many are referred to as BMPs) that can be utilized on agricultural and non-agricultural lands to ensure that the amount of nutrients, specifically P and N, in offsite discharge is minimized, thereby preven ting excessive nutrients from entering the waterways. Implementation of BMPs is a relatively cost-effective pollutant reduction and prevention measure. BMPs include structural and non-st ructural measures.
Structural measures include cr eating physical changes in the la ndscape to rer oute discharges, installing water control structures , and erecting barriers. Non-stru ctural source control measures include education, operational or behavioral changes, a nd establishing regulations.

The major categories of commonly used BMPs are nutrient management, water management, and erosion control. Nutrient management considers the amount, timing, and placement of nutrients, such as fertilizer. Water management considers the timing, volume, maintenance, and overall efficiency of the stormwat er and irrigation systems. Eros ion control practices prevent the off-site transport of nutrients in particulate matter and sediment.

One key component of an effective BMP program is education to make participants aware of practices and activities that may contribute to pollutants in discharges. The education component of source control also includes providing the la test technical information, through demonstration and research projects, to continually optimize the effectiveness of BMPs and to introduce alternative nutrient source control technologies. Much of the region-sp ecific BMP research to date has been conducted in partnership with th e University of Florid a Institute of Food and Agricultural Sciences (UF/IFAS). Another key factor for an e ffective source control program is the proper implementation of the BMPs. The coordinating agencies are making a complementary effort to verify that particip ants are trained and im plementing BMPs properly.

There are existing and proposed nu trient source control program s within the Caloosahatchee River Watershed. These programs are develope d and implemented cooperatively by SFWMD, FDEP, and FDACS, in collaboration with loca l governments and private landowners. Examples include development and implementation of agricultural and non-agricultural BMPs, development of agricultural use plans that limit nut rient loading, rest rictions on the application of domestic wastewater residuals and septage, implementation of the Florida Yards and Neighborhoods Program, and several urba n stormwater management programs.

These nutrient source control programs will continue, regardless of the number, size, and configuration of the capital water quality impr ovement projects described and prioritized elsewhere in this plan. Nutrient source control is a critical com ponent of watershed restoration; it is typically less expensive to prevent pollution than to remediate its impacts. Further, these programs operate under authorities and re quirements independent of the NEEPP.

7.1.1 South Florida Water Management Distri ct Nutrient Source Control Programs

7.1.1.1 Environmental Resource Permit Program

One of the earlier polluta nt source control programs began in the 1980s in Chapters 17 to 25, Florida Administrative Code (F.A.C.) and focuse d on the regulation of stormwater. Since theChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-3 1990s, stormwater quality has been regulated under the Environmental Resource Permit (ERP) program, which is found in Part IV of Chapter 373, F.S. The ERP program regulates activities involving the alteration of surface- water flows, and it includes activities in uplands that alter stormwater runoff, as well as dredging and filling in wetlands and other surface waters. Generally, the program’s purpose is to ensure that alterations do not degrade water quality, compromise flood protection, or adversely affect the func tion of wetland systems.

In May 2007, FDEP initiated the development of th e Unified Statewide Stormwater rule. In June 2007, SFWMD also initiated rule development to incorporate the Unified Statewide Stormwater
rule. The rule will be based on a performance standard of post-dev elopment total nitrogen (TN) and total phosphorus (TP) loadi ng not exceeding pre-development natural conditions. The predevelopment natural condition is pro posed to be defined as the conditi on of the site as if it were naturally vegetated, not necessarily the conditions existing at the site today. The intended effect of the rule is to increase the level of treatment required for TN and TP in stormwater from new development, which is anticipated to adequately address the discharge of nutrients in general. Methods for estimating treatment efficiency in typical water management BMPs and in low impact design type water management BMPs are pr oposed to be included in the rule, as well as retrofit projects, redevelopment and compensating tr eatment. The rule is also anticipated to have an incidental effect of reducing the volume of stormwater. The proposed date for rule adoption
is mid to late 2010.

In March 2008, SFWMD initiated rule developmen t for an ERP Basin Rule with supplemental criteria designed to result in no increase in total runoff volume from new development that ultimately discharges to Lake Okeechobee or the Caloosahatchee or St. Lucie estuaries. This rule will be supplemental to existing criteri a and the proposed USS rule. Average annual discharge volumes are proposed to be addressed. Methods for estimating storage capacities in typical water management BMPs and in low-im pact design type water management BMPs are also proposed to be included in this rule. The ta rget effective date of the rule is mid to late 2010.

7.1.1.2 Proposed Caloosahatchee River Watershed Regulatory Nutrient Source Control Program

The existing SFWMD 40E-61 Regulatory Nutrient Source Control Program was adopted in 1989 [Chapter 40E-61, Florida Administrative Code (F .A.C.)], as a result of the Lake Okeechobee Surface Water Improvement and Management (SWI M) Plan, to provide a regulatory source control program specifically for P. The NEEP P legislation expanded the program boundary to the Caloosahatchee River Watershed and included N, in addition to P, as the focus of nutrient source controls. The program applies to new a nd existing activities with the goal of reducing nutrients in offsite discharges.

SFWMD is proposing to modify Chapter 40-61, F.A.C. to be compatible with recent amendments to the NEEPP to include the following:

• Implement a nutrient source control program utilizing BMPs for agricultural and nonagricultural lands within the Northern Everglades, including the Caloosahatchee River Watershed;Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-4 • Recognize agricultural lands that are greater than 100 acres and are participating in the FDACS BMP program as meeting the intent of the proposed rule, to prevent duplication of effort;

• Define the monitoring network necessary to gauge the collective effectiveness of the source control programs implemented by th e coordinating agencies, to make water quality compliance determinations as necessary, to identify priority areas of water quality concern, and to provide data to evaluate and enhance performance of downstream treatment facilities;

• Establish water quality performance criteria specific to the collective source control programs and develop a plan for optimizi ng the collective BMP programs, should the expected water quality performance criteria not be met;

• Establish nutrient concentration limits for si tes utilized for septage application or disposal;

• Ensure that the rule is consistent with data presented in the CRWPP; and

• Include incentives to participate in nutrient reduction demonstration and research projects that will provide valuable data for expanding, accelerating, and optimizing the implemented BMPs to meet water quality obj ectives and for further refinement of the

programs, as necessary.

To ensure consistency with the CRWPP, rule development is expected to begin in 2009.

7.1.2 Florida Department of Agriculture a nd Consumer Services Nutrient Source Control Programs

7.1.2.1 Agricultural Best Manage ment Practices Program

The Florida Watershed Restoration Act (Sec tion 403.067, F.S.), enacted in 1999, authorizes FDACS to develop, adopt by admini strative rule, and implement agricultural BMPs statewide. Through the Office of Agricultural Water Polic y, FDACS develops, adopts and implements agricultural BMPs to reduce water quality imp acts from agricultural discharges and enhance water conservation. Where agricu ltural nonpoint source BMPs or interim measures have been adopted by FDACS, the owner or operator of an agricultural nonpoint source addressed by such rule shall either implement interim measures or BMPs or demonstrat e compliance with the SFWMD’s 40E-61 Regulatory Nutr ient Source Control Progr am, by conducting monitoring prescribed by FDEP or SFWMD.

The Office of Agricultural Water Policy’s role involves assisting ag ricultural producers in selecting, funding, properly impl ementing, and maintaining BMPs. The Office of Agricultural Water Policy employs field staff and contracts with service providers to work with producers to identify and to implement BMPs appropriate fo r their operations. A detailed explanation of adopted agricultural BMPs can be found at www.floridaagwaterpolicy.com . Printed BMP
manuals can be obtained in local extension offices at county agricultural centers or by contacting Office of Agricultural Water Policy field staff.

The Office of Agricultural Water Policy has adopt ed, by rule, BMPs that address the following operations in the Caloosahatchee River Watershed:Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-5 • Container Nurseries (Chapter 5M-6, F.A.C.);

• Vegetable and Agronomic Crops (Chapter 5M-8, F.A.C.); and

• Citrus (Chapter 5M-2, F.A.C.).

The Office of Agricultural Water Policy is currently developing and will be adopting BMP manuals of statewide applicati on for cow/calf, equine, containe r nursery, and sod operations. BMPs for all agricultural land uses in the Caloosahatchee River Watershed are expected to be adopted and available for implem entation (enrollment) by early 2009.

When the 2007 Florida legislature enacted the NEEPP legislation, si gnificant portions of agricultural acreage within the Caloosahatchee River Watershed were already implementing (enrolling) water resource protec tion BMPs previously adopted by FDACS. As of the approval date of the CRWPP, agricultural acreage within Glades, Hendry, and Charlotte counties enrolled in the FDACS BMP Program totaled 242,000 acres. Enrolled acreage is expected to increase dramatically when the beef cattle BMP manual is adopted in early 2009.

To meet the intent of the NEEPP legislation with regard to agriculture in the Caloosahatchee Basin, the Office of Agricultural Water Policy will conduct the following activities during 2008 to 2012, as necessary and feasible:

• Adopt BMP manuals for cow/calf, equine , container nursery, and sod operations;

• Intensify its efforts to sign up cow/calf and equine produc ers for BMP implementation in the Caloosahatchee Basin;

• Work with FDEP to identify priority co w/calf and equine BM Ps and verify their effectiveness;

• Develop a BMP implementation assurance program to follow up with selected cow/calf and equine operations on whet her they are implementing BM Ps and keeping appropriate records;

• Provide or participate in tr aining and educatio nal opportunities for producers regarding BMP implementation and its importance to water quality;

• Evaluate the need for BMP enrollment and implementation for other commodities in the
basin and conduct these on a priority basis; and

• Continue on-farm BMP demonstration projects at representative sites to provide BMP effectiveness data and insight into what ne w or modified BMPs may be necessary to reach nutrient reduction goals.

7.1.2.2 Animal Manure Application Rule

In February 2008, FDACS in itiated rule developmen t to control the land application of animal
wastes in the Caloosahatchee River Waters hed. The proposed rule includes minimum application setbacks from wetlands and all surf ace waters. Landowners who apply more than one ton per acre of manure must develop conser vation plans, approved by the US Department of Agriculture/National Resource Conservation Servi ce (USDA/NRC), that specifically address the application of animal wastes and include so il testing to demonstrate the need for manure application. All use of animal manure must be recorded and included in the operation’s overallChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-6 nutrient management plan. FDACS e xpects to complete rule making for this effort by the fall of
2008.

7.1.2.3 Urban Turf Fertilizer Rule

In August 2007, FDACS adopted a statewide Urban Turf Fertilizer Rule 5E-1.003(2) F.A.C.
The rule limits the P and N content in fertilizer s for urban turf and lawn s, thereby reducing the amount of P and N applied in urban areas and limiting the amount of those compounds reaching
Florida’s water resources. It requires that, by July 1, 2009, all fe rtilizer products labeled for use on urban turf, sports turf, and lawns be limited to the amount of P and N needed to support healthy turf maintenance. FDACS expects a 20 to 25 percent reduction in N and a 15 percent reduction in P in every bag of fertilizer sold to the public.

The rule was developed by FDACS, with input from UF/IFAS, FDEP, th e state’s five water management districts, the League of Cities, the Association of Counties, fertilizer manufacturers,
and concerned citizens. The rule enhances effort s currently underway to address excess nutrients
in the northern and southern Ev erglades. As a component of the Lake Okeechobee and Estuary Recovery (LOER) Plan established in October 2005, the new rule is an essential component to improve water quality through nutrient source control.

In addition, the Southwest Florida Regional Planning Council (SWFRP C) has approved a resolution (SWFRPC Resolution # 07-01) addressing urban fertili zer use that adds additional limitations to urban fertilizer use. Lee County a nd the City of Sanibel have adopted ordinances (Lee County Ordinance No. 08-08 and City of Sanibel Ordinance No. 07-003), which further
limit the use of fertilizers in their urban areas.

7.1.3 Florida Department of Environmental Protection Pollutant Source Control Programs

FDEP is responsible for several existing and pl anned source control programs primarily targeting urban and non-agricultural issues. Programs include:

• Initiatives to improve existing stormw ater and wastewater infrastructure;

• Implementation of pollutant reduction plans for municipal stormwater management systems;

• Land development regulations to pr omote proper stormwater treatment;

• Enhancement to existing regulations for th e management of domestic wastewater residuals within the watershed;

• Coordination with applicable authorities on septage disposal to en sure that nutrient loadings are considered; and

• Administering the National Pollution Discha rge Elimination System (NPDES) permit

program.

7.1.3.1 Stormwater and Wastewater Infrastructure Updates and Master Planning

Stormwater and wastewater infrastructure update s and master planning are the responsibility of, and implemented by, the local governments. Por tions of the Caloosahatchee River Watershed urbanized area were developed prior to the implem entation of ERP. In these areas, stormwater
retention and treatment levels are often inade quate to protect surfac e water quality. LocalChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-7 governments in the Caloosahatchee River Wa tershed have been conducting stormwater management projects for more than ten years, we ll before the initiation of municipal stormwater permits in the watershed. Additionally, the SWFRPC has approved a Stormwater Resolution (SWRRPC Resolution #2008-11) pr oviding specific recommendations and guidelines to be considered by local government jurisdictions in Southwest Florida for the regulati on, control, use, and treatment of stormw ater containing N and /or P.

7.1.3.1.1 National Pollution Discharge Elimin ation System Wastewater Facilities

There are five domestic wastewater treatment faci lities that are permitted to discharge treated wastewater to the Caloosahatchee River ( Table 7-1 ). All meet Advanced Wastewater Treatment Standards (F.S. 403.086) for N and are more stringent for P. All offer secondary treatment with additional nutrient removal; some have high-leve l disinfection and/or dechlorination for public access reuse, which is used for urban irrigation.

All capacities listed in this section are in “a nnual average daily flow,” except for Waterway Estates, which uses both annual averag e and “maximum monthly daily flow.”

Fort Myers Central Wastewater Treatment Plant (WWTP) (FL0021261) has a permitted treatment capacity of 11 million ga llons per day (MGD). This faci lity has two disposal methods
for the treated effluent:

• An 11 MGD permitted surface water discharge (Caloosahatchee River); and

• A 1.5 MGD public access re-use system that has a planned expansion up to 6 MGD in this permit cycle (by 2011).

Fort Myers South WWTP (FL0021270) has a permitted treatment capacity of 12 MGD. This facility has one disposal method for the treat ed effluent, a 12 MGD permitted surface water discharge (Caloosahatchee River).

Fiesta Village WWTP (FL0039829) has a permitted treatment capacity of 5 MGD. This facility has two disposal met hods for the treated effluent:

• 5 MGD permitted surface water discharge (Caloosahatchee River); and

• 2.01 MGD public access reuse system.

This facility is also permitted for intermittent discharges from reuse storage/stormwater ponds. These indirect discharges occur only during high water events.

Waterway Estates Wastewater Treatment Fa cility (WWTF) in North Fort Myers (FL0030325) has a permitted treatment capacity of 1.25 M GD. This facility has two disposal
methods for the treated effluent:

• 1 MGD surface water discharge (Caloosahatchee River); and

• 0.95 MGD public access re-use system.Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-8 It should also be noted that unlike other facili ties, this facility has a maximum of 1.5 MGD for both capacity and reuse disposal, if measured by “maximum mont hly daily flow” as opposed to “annual average daily flow.”

The City of Cape Coral (FL0030007) operates two water reclam ation facilities under one collective permit. Everest Parkway Water Reclamation Facility (WRF) has a permitted treatment capacity of 8.5 MGD and is currently expanding to a capacity of 13.4 MGD.
Southwest WRF has a permitted treatment capacity of 6.6 MGD and is currently expanding to
15.0 MGD. The facilities utili ze three methods for disposal of treated effluent:

• 15.1 MGD capacity surface water discharge (shared – Caloosahatchee River);

• 29.4 MGD public access reuse system (shared); and

• Independent underground injection wells:

− Everest Parkway WRF uses a 3.35 MGD underground injection well; and

− Southwest WRF uses a 3.75 MGD underground injection well currently under expansion to 9.6 MGD. When Southwest WRF completes the expansi on to its injection well, it will disconnect from the river outfall an d function under an independent permit.

Table 7-1. Point Sources in Tidal Caloosahatchee River
Domestic Wastewater Treat ment Facility Effluents

1 The Average Daily Flow is the average daily flow, averaged on an annual basis, being treated and discharged from the facility (including all disposal types).

2 The Surface Water Discharge column describes the average daily fl ow being discharged to the tidal Caloosahatchee River.

3 The Reuse Systems Disposal column describes the average daily flow being sent to a reuse system.

7.1.3.1.2 Stormwater Infrastructure and Master Planning

Local governments have constructed and continue to build stormwater retrofits, such as
detention/retention facilities and swales, to improve the quality of urban stormw ater runoff. Lee, Hendry, and Glades counties do not have stormwater utilities in place, but do have dedicated mechanisms used to fund stormwater improveme nts through Capitol Improvement Plans. Facility
Name NPDES
Permit No. Permitted
Flow (MGD) Year Average Daily
Flow 1 (MGD) Surface
Water Discharge 2

(MGD) Reuse Systems Disposal 3

(MGD) Fort Myers
Central FL0021261 11 2005-
2007 6.809 5.899 0.91

Fort Myers
South FL0021270 12 2005-
2007 8.866 8.866 0

City of Cape Coral FL0030007 15.1 2005-
2007 9.405 + deep well injection 3.899 5.506

Waterway
Estates FL0030325 1.25 2005-
2007 1.07 0.987 0.086

Fiesta Village FL0039829 5 2005-
2007 2.89 1.885 1.005Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-9 Charlotte County and the Southwest Florida Wa ter Management District jointly fund the Charlotte County Master Stormwater Manageme nt Plan which was completed in 1998. The Master Plan targeted ten majo r stormwater basins for draina ge analysis and planning. The Master Plan identified 40 major water control st ructures which need to be replaced due to deterioration or to meet current design and Co mprehensive Plan Level of Service conveyance standards. The highest priority projects are contained within Charlotte County's adopted, multiyear Capital Improvements Program.

Lee and Hendry counties also have adopted Stor mwater Master Plans in order to address flooding and property damage c oncerns, address water quality issues, and preserve the environment and enhance wildlife habitat. Objectives of the Lee County Plan are to identify existing flowways, streams, and runoff rate s for each basin and recommend actions for protection and improvement of each flowway and stream. Hendry County’s Surface Water Master Plan includes the development of watershed boundaries, wetland maps, a conveyance element database, and detailed hydrologic-hydraulic studies for the northwest portion of the County.

Local utilities are also aggressi vely pursuing upgrades to their wastewater management systems to protect water quality. Improvements to lift stations, inspection frequency and replacement of leaking sewer lines, and relate d activities help limit the introduction of nutrients into surface waters. Additionally, the SWFRPC has a pproved a Wastewater Resolution (SWFRPC Resolution #2007-02) providing spec ific recommendations and guide lines to be considered by local government jurisdictions in Southwest Flor ida for the regulation a nd control of treated wastewater discharges containi ng N and/or P. The SWFRPC ha s also approved a Wastewater Package Plant Resolution (SWFRPC Resolutio n #2007-05) providing specif ic recommendations and guidelines to be considered by local governme nt jurisdictions in Southwest Florida for the regulation and control of treated wastewater discharges from small wastewater treatment facilities (Package Plants ) containing N and/or P.

7.1.3.2 Municipal Separate Storm Se wer System Permit Program

Local governments (Lee County, Glades County, Hendry County, and Charlotte County) and the Florida Department of Transportation (FDOT) operate permitted Municipal Separate Storm Sewer Systems (MS4s) in the Caloosahatchee Ri ver Watershed. An MS4 is a publicly-owned conveyance or system of conveyances designed or used for discharging stormwater, which can include streets, curbs, gutters, ditches and st orm drains. These water conveyance systems are permitted through the statewide MS4 permi tting program and receive a NPDES permit administered by FDEP (see Chapter 62-624, F. A.C.). The purpose of the MS4 permitting program is to develop, implement, and enforce a stormwater management plan to reduce the discharge of pollutants to the maximum extent practicable, to protect water quality and to comply with the water quality requirements of the Clean Water Act (CWA).

The stormwater collection systems are owned and operated by Lee County and co-permittees, including the City of Cape Coral, City of Fort Myers, Town of Fort Myers Beach, and the City of
Sanibel. All are on MS4 Phas e I Permit Number FLS000035. As shown in Table 7.2, Charlotte County, which has population areas in northern portions of some Tidal CaloosahatcheeChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-10 waterbody identifications (WBIDs), is covere d by a separate MS4 Phase II permit (Permit Number FLR04E043).

Table 7-2. Municipal Separate Storm Sewer System Permittees in the Tidal Caloosahatchee
Watershed

County Name Permit ID Number MS4 Type

Lee Lee County Board of County
Commissioners FLS000035 Phase I

Lee City of Fort Myers FLS000035 Phase I Lee City of Sanibel FLS000035 Phase I Lee City of Cape Coral FLS000035 Phase I Lee Town of Fort Myers Beach FLS000035 Phase I Charlotte Charlotte County FLR04E043 Phase II

Permit duration is five years. Most of the MS4 permits in the Caloosahatchee Basin are Phase I permittees, up for renewal in 2008. However, there are a few Phase II permittees. Each phase is summarized in the following subsections.

7.1.3.2.1 Phase 1 Municipal Separate Storm Sewer Systems

Phase 1 MS4s consist of jurisdictions with a popul ation of 100,000 individuals or more that were designated by the U.S. Environmental Protecti on Agency in 1990. Issuance of Phase I MS4 permits is complete; therefore, any new MS4 faci lities will be permitted as a Phase II facility. Phase I MS4s are regulated through an i ndividual NPDES permit that addresses:

• Implementation of stormwater master plan to reduce pollutants to the maximum extent practicable;

• Development of storm sewer system map;

• Implementation of a monitoring plan;

• Calculation of Event Mean C oncentrations and Seasonal Pollutant Loadings, at least once per permit term (usually in year three or five years);

• Post-construction runoff control (met thr ough state stormwater permitting requirements [ERP] under Part IV, Chapter 373, F.S., as a qualifying alternative program); and

• Pollution prevention/good housekeeping.

7.1.3.2.2 Phase II Municipal Separate Storm Sewer Systems

Phase II MS4s are regulated under an NPDES gene ric permit that requires implementation of BMPs to meet the following six minimum control measures:

• Education and outreach (e.g. Florida Yards and Neighborhoods Program);

• Public participation;

• Illicit discharge detection and elimination;

• Construction site runoff control;

• Post-construction runoff control (met thr ough state stormwater permitting requirements [ERP] under Part IV, Chapter 373, F.S., as a qualifying alternative program); and

• Pollution prevention/good housekeeping.Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-11 7.1.3.3 Comprehensive Planning – Land Development Regulations

The Office of Intergovernmental Programs coor dinates FDEP’s involvement in statewide planning efforts conducted under various authorit ies, including Chapter 187, F.S. (the State Comprehensive Plan), which sets forth goals that articulate Florida’s desi red future. The State Comprehensive Plan is reviewed annually, and local plans are updated ev ery five-to-seven years through the Evaluation and Apprai sal Report process. Throughout this process, FDEP has the formal opportunity to evaluate proposed amen dments to the Comprehensive Plan, which are based upon the evaluation and appraisal report, to ensure that they are consistent with FDEP rules and policies.

Local governments in the Caloosah atchee Basin are taking steps to implement low impact design principles to minimize nutrient source s and loss and enhance water storage.

7.1.3.3.1 Domestic Wastewater Residuals – Se nate Bill 392/2007 changes to Section 373.4595, Florida Statues

In response to the 2007 residua ls-related changes to Secti on 373.4595, F.S., FDEP’s Division of Water Resource Management pr omulgated a program guidance memo. The memo provides general procedures for FDEP district offices to implement the requirements within the current regulatory framework of Chapter 62-640, F.A.C. This guidance is consistent with the NEEPP legislation stating that “ After December 31, 2007, the Department may not authorize the disposal of domestic wastewater residuals within the Ca loosahatchee Watershed unl ess the applicant can affirmatively demonstrate that the nutrients in the residuals will not add to nutrient loadings in
the watershed .” Section 373.4595(4)(a)2.e., F.S. (2007).

Effectively, the provisions will be phased in as wastewater treatment facility permits expire.
Permit renewals must include th e appropriate nutrient balance de monstration, required by the statute in the site agricultural use plan and subm itted with the facility perm it renewal application.

Additionally, Chapter 62-640, F.A. C., is undergoing rule making. Under the proposed revisions,
the nutrient balance demonstration must be submitt ed with the Nutrient Management Plan when a land application site is permitted.

7.1.4 Other Pollutant Source Control Programs

7.1.4.1 Application of Septage – Senate Bill 392/2007 changes to Section 373.4593,
Florida Statues

Sections 373.4595(4)(a)2.f. and (4)(b)2.f., F.S. ( 2007), require all entities disposing of septage
within the Caloosahatchee and St . Lucie River watersheds to de velop and submit to the FDOH, an agricultural use plan that lim its applications based upon nutrient loading. In response to these NEEPP requirements, FDOH has notified all count y permitting authorities in the watersheds of the requirement that entities disposing of septag e within the watersheds develop and submit to FDOH an agricultural use plan th at limits applications based upon nut rient loading. At this time, there are no known septage application sites in these watersheds. Once SFWMD or FDEP has promulgated nutrient concentration limits for ru noff from sites in these watersheds, through the SFWMD’s 40E-61 Regulatory Nutrie nt Source Program or anothe r validly adopted rule, FDOHChapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-12 will notify all county permitting authorities in the watersheds that nutrient concentrations originating from these application sites may not exceed the established limits.

7.1.4.2 Florida Ranchlands Enviro nmental Services Project

Launched in October 2005, the Florida Ranchlands Environmental Services Project will design a program under which ranchers in the northern Everglades waters heds can sell environmental services of water retention, P load reduction, and wetland habitat expansion to agencies of the state and other willing buyers. To document the level of envir onmental services provided by ranch water-management projects, the Florida Ra nchlands Environmental Services Project will field test different methods of monitoring a nd modeling of hydrology, wa ter and soil chemistry and vegetation change.

These ranchers will bring such services on line quickly, in comparison to other options, because land purchase is not required. The program will complement public investment in regional water storage and water treatment facili ties. The sale of the water re tention services will add income for ranchers and will provide an incentive to combat converting land uses for more intensive agriculture and urban development land uses that can increase stormwater flow, pollution, and habitat impacts.

The Florida Ranchlands Environmental Servic es Project is being implemented through a collaboration of the World Wildlife Fund, eight participating ranche rs, the USDA/NRCS, FDACS, SFWMD, and FDEP. Technical support is being provided by scientists from the MacArthur Agro-Ecology Research Center and the University of Florida. Funding from federal, state, and private sources exceeds five million dolla rs for Phase One, which includes pilot project implementation and program design.

7.1.4.3 Florida Yards and Neighborhoods Program

The Florida Yards and Neighborhoods Program is an excellent example of a nonstructural program. It is a partnership of UF/IFAS, Fl orida’s water management districts, FDEP, the National Estuary Program, the Florida Sea Grant College Program, concerned citizens, members of private industry and numer ous other nongovernmental agencies . It is implemented through the counties’ UF/IFAS Cooperativ e Extension Service. The pr ogram addresses the serious problems of pollution in stormwater runoff, wa ter shortages and disappearing habitats by enlisting Floridians to preserve and to protect our natural resources. By educating citizens and builders about proper landscape design (e.g., “right plant-right place” practices), this program is helping minimize the use of pesticides, fertilize rs, and irrigation water. FDEP has an ongoing monitoring program to determine the effectiveness of this program in reduc ing nutrient loads. More information on this program, as well as other FDEP BMPs, can be found at www.dep.state.fl.us/water/nonpoint/pubs.htm

.

7.2 Summary

Source control is integral to the success of any water resource protection or restoration program; it is typically less expensive to prevent polluti on than remediate its impacts. Source control programs in the Caloosahatchee River Wate rshed are evolving and expanding through cooperative and complementary ef forts by FDEP, FDACS, and SFWMD. Activities underway,Chapter 7

Caloosahatchee River Watershed Protection Plan January 2009
7-13 which will significantly improve the source control program’s contribution to the achievement of NEEPP legislation objectives, include:

• Adoption of BMP manuals for cow/calf, equi ne, container nurser y, and sod operations (all agricultural land uses in the Caloos ahatchee River Watershed expected to have FDACS-adopted BMP manuals by early 2009);

• Proposed revisions will be implemented to supplement the ERP program, including the proposed statewide stormwater treatment rule th at is intended to increase the level of treatment required for nutrients (N and P) in stormwater from new development, and the proposed basin rule for the Lake Okeechobee and estuary watershed basins with specific supplemental criteria designed to result in no increase in total runoff volume from new development;

• Expansion of the SFWMD’s 40E-61 Regulator y Nutrient Source Control Program to
include the Caloosahatchee River Waters hed is planned for both P and N;

• Restrictions to the P and N content in fe rtilizers for urban turf and lawns; and

• Restrictions on the disposal of domestic wa stewater residuals, septage, and animal manure within the watershed are proposed.

Collectively, these source control programs will require all agricultural and non-agricultural land uses to implement and be accountable for BMPs through th e FDACS BMP program or the SFWMD’s Regulatory Nutrient S ource Control Program, or by demonstrating compliance with water quality standards, as applicable.CHAPTER 8

CALOOSAHATCHEE RIVER WATERSHED RESEARCH AND WATER QUALITY
MONITORING PROGRAM SUMMARYChapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-i TABLE OF CONTENTS

8.0 CALOOSAHATCHEE RIVER WATERSHED RESEARCH AND WATER QUALITY
MONITORING PROGRAM SUMMARY ................................................................................. 8-1
8.1 Research and Water Quality Monitori ng Program Document Structure.....................8-1
8.2 Goals and Objectives ...................................................................................................8-2
8.3 Status, Trends and Targets........................................................................................... 8-2
8.4 Monitoring, Research, and Modeling Assessment ......................................................8-4
8.4.1 Monitoring Assessment .......................................................................................8-4
8.4.1.1 Existing Watershed Monitoring Programs..................................................8-4
8.4.1.2 Existing Estuarine Monitoring Programs.................................................... 8-5
8.4.1.3 Aquatic Habitat (O yster and Seagrass) Monitoring....................................8-5
8.4.2 Research Projects Assessment ............................................................................. 8-6
8.4.3 Modeling Assessment ..........................................................................................8-7
8.4.3.1 Caloosahatchee River Watershed Hydr ology and Water Quality Models..8-7
8.4.3.2 Estuary Hydrodynamic and Water Quality Models....................................8-8 8.4.3.3 Ecological Response Model........................................................................8-9
8.5 Research and Water Quality Monitoring Program Recommendations........................8-9
8.5.1 Monitoring Needs ................................................................................................8-9
8.5.1.1 Watershed Quality and Flow Moni toring in the Watershed .......................8-9
8.5.1.2 Water Quality and Salinity Monitoring in the Caloosahatchee Estuary...8-10
8.5.1.3 Aquatic Habitat Monitoring......................................................................8-10
8.5.2 Prioritization of Research .................................................................................. 8-10
8.5.3 Model Refinements............................................................................................ 8-11

LIST OF TABLES

8-1 Capabilities of the Watershed H ydrology and Water Quality Models ............................ 8-8 8-2 Capability of the Estuarine Hydrodynamic and Water Quality Model............................ 8-8 8-3 Capability of the Estuarine Ecological Response Models ............................................... 8-9 8-4 Commonalities between Component s of the Various Projects...................................... 8-11Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-1 8.0 CALOOSAHATCHEE RIVER WATERSHED RESEARCH AND WATER QUALITY MONITORING PROGRAM SUMMARY

The Northern Everglades and Estuaries Protec tion Program (NEEPP) requires the establishment
of a Caloosahatchee River Watershed Resear ch and Water Quality Monitoring Program (RWQMP). According to the NEEPP, this pr ogram shall build upon the South Florida Water Management District’s (SFWMD ) existing research program a nd be sufficient to carry out, comply with, or assess the plans, program s, and other responsibilities created by the
Caloosahatchee River Watershed Protection Plan (CRWPP). The RWQMP shall also conduct an assessment of the water volumes and timing fr om the Lake Okeechobee and Caloosahatchee
River Watershed and their relativ e contributions to the timing a nd volume of water delivered to the Caloosahatchee Estuary. This section prov ides the summary of the RWQMP, whereas the full version of the program is included as Appendix E

.
The objective of the RWQMP is to identify scient ifically based solutions to improve the water quality and quantity in the Caloosahatchee River Watershed and to provide more accurate predictions of ecologica l responses to changes in the Calo osahatchee River Watershed to these solutions. Information generated through the mon itoring, modeling and resear ch efforts will help support potential changes in the de sign and operation of the NEEPP.

8.1 Research and Water Quality Monitoring Program Document Structure

The RWQMP includes five chapters, which ar e described in the following paragraphs.

Chapter 1 provides an introduction to the RWQMP, a brief summary of the ecological history of the Caloosahatchee River Watershed, and the rationale for the program.

Chapter 2 identifies the specific goals and objec tives of the RWQMP based on the legislation. This chapter specifies how research, modeli ng, and monitoring contribute to the adaptive management of nutrient load reduction goals an d the implementation and operation of projects designed to achieve them.

Chapter 3 presents the current state of knowledge regarding hydr ology, water quality and aquatic
habitat in the Caloosahatchee Rive r Watershed. It also identifies the effects of discharges from Lake Okeechobee on the Caloosahatchee Estuary, al ong with salinity a nd freshwater inflow goals. Also included in this chapter is a detailed chemical a nd physical analysis of the water quality, along with the ecological importance a nd distribution of submerged aquatic vegetation and oysters.

Chapter 4 is a summary of existing monito ring programs for hydrology, water quality, and aquatic habitat. The programs are evaluated ba sed on their ability to meet program goals and potential improvements are identif ied. Finally, a recommended monitoring plan is described.

Chapter 5 describes ongoing research and m odeling applicable to the RWQMP goals and objectives. Plans for future rese arch and modeling are also descri bed and prioritized. Integration of research, modeling, and monito ring will establish scientifically sound performance measures and support improvements to the Caloosahatch ee Estuary through the adaptive management

process.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-2 8.2 Goals and Objectives

Research, modeling, and monitoring are essentia l for the design and operation of programs to restore and protect the Caloos ahatchee River Watershed.

The following objectives are keys to the success of the RWQMP:

• Build upon SFWMD’s existing monitoring, research, and modeling programs;

• Implement, comply with, or assess the plan s, programs, and other responsibilities of NEEPP;

• Assess the water volumes and timing from La ke Okeechobee and the St. Lucie River and
Caloosahatchee River watersheds and their relative contributions to the timing and volume of water delivered to each estuary;

• Provide technical information regarding infl ow targets and salini ty envelopes for the estuaries;

• Provide for the scientific studi es that are necessary to suppor t the design and operation of
the Caloosahatchee River Watershed Construction Project facilities;

• Facilitate creation of pr edictive and/or numeric mo deling tools for quantitative assessment and prediction of the overall program progress;

• Provide the empirical data and conceptual understanding of the Caloosahatchee River Watershed and Estuary for support and improve ment of the predictive models and to identify new water quality management measures;

• Collect data as necessary to quantify load reductions in order to meet any applicable Total Maximum Daily Loads (TMDLs) in the Caloosahatchee River Watershed;

• Implement salinity monitoring sufficient to measure the frequency and duration of
undesirable salinities for those biotic resources upon which sa linity envelopes are based;

• Monitor oysters and seagrasses to determine if reductions in undesirabl e salinities and/or nutrient loads have the desired ecological result; and

• Support annual reporting of the conditions of hydrology, water quality, and aquatic habitat required by the NEEPP in Section 373.4595(6), F.S.

8.3 Status, Trends and Targets

Chapter 3 of the RWQMP addresses the status , trends, and targets in hydrology, salinity, and aquatic habitats. The CRWPP w ill use this information to establish a goal for salinity and freshwater inflow targets for the estuary ba sed upon existing research and documentation.

Trends identified in Chapter 3 of the RWQMP include:

• Change in the delivery of fres hwater to the estuary at S-79 has grown more variable with higher wet season discharges and lower dry-season discharges;

• Freshwater inflows are such that in general about half the di scharge at S-79 is attributed
to runoff from the eastern and western ba sins and half to Lake Okeechobee;Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-3 • Compared to watershed runoff alone, additio nal flows from Lake Okeechobee effectively increase the frequency and dur ation of high flows which, da mage the marine portion of the estuary, but decrease the frequency a nd duration of the damaging low flows that impact upstream, low salinity regions;

• At 27 stations, mainly in tidal creeks of th e Caloosahatchee Estuary, 74 percent showed slight increases in the concen tration of ammonia and 44 perc ent showed slight increases in TN and dissolved inorganic TP; and

• Comparisons to TN (1.0 milligrams per li ter (mg/L)), TP (0.15 mg/L) and chlorophyll- a (20 micrograms per liter (μg/L)) standards established for the upper estuary by FDEP Regulation (DeGrove, 1981) revealed:

- Most exceedances occurred in the estuary upstream of Fort Myers;

- DO concentrations less than the state standard (4.0 mg/L), or the generally accepted threshold for hypoxia (2.0 mg/L), were relatively rare and confined to the upper reaches of the Ca loosahatchee Estuary;

- Low DO concentrations tended to occu r during the warmer months of May through October;

- In the upper and mid-estuarine regions, chlorophyll- a concentrations exceeded the nutrient standard in 40 percent of the samples; and

- In the lower estuary and San Carlos Bay, the vast majority of measured
concentrations were below the standard.

An optimal flow envelope for the estuary (Shell Point to Km 30) would be 600 cfs to 1,000 cfs. Flow less than 1,500 cfs and 3,000 cfs would preserve optimal salinities fo r San Carlos Bay and Pine Island Sound, respectively. In general, the desired sali nity envelope consists of:

• < 10 parts per thousand (ppt) upstream of the Fort Myers Bridges (measured at the Fort Myers Yacht Basin);

• > 15 ppt at the Cape Coral Bri dge and ~ 20 ppt in Iona Cove;

• 14 to 28 ppt just upstream of Shell Point; and

• ~ 25 ppt (range 22 ppt to 36 ppt) in San Carlos Bay.

The general monthly average flow range objectives to support the optimal flow envelope are:

• Maintain mean monthly flows greater than 45 0 cfs, with the majority of flows in the range 450 to 800 cfs, which supports the widest range of species;

• Limit the flows greater than about 2,800 cfs and avoid flows that exceed 4,000 to 4,500 cfs, which harm seagrass beds as far as lower Pine Island Sound; and

• End destructive flows that exceed 6,500 cfs, which destroy marine life far from the estuary mouth and sends poor water quality up Pine Island Sound and into the Gulf of
Mexico.

The combination of enhanced drainage in the Caloosahatchee River wa tershed, flood control releases from Lake Okeechobee, population gr owth, and urban and agricultural development have created problems for the Caloosahatchee Estuar y. Seasonal and short term fluctuations in stormwater runoff drive changes in salinity that are beyond the tolerance limits of most marineChapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-4 and estuarine organisms. The Caloosahatchee Estuary shows t ypical signs of eutrophication (extreme nutrient levels) including intense al gal blooms and periods of hypoxia (low DO levels) and anoxia (absence of DO). Other environmental problems identified include degraded benthic communities, decreases in the extent of seagra sses, and the loss of functioning oyster reefs.

8.4 Monitoring, Research, and Modeling Assessment

Assessments of monitoring, resear ch, and modeling will be used to track progress and to identify if the plan objectives and targets are being met. They will also aid in identifying potential shortfalls or accomplishments. For example, information gain ed from monitoring, modeling,
and research can be used to id entify any necessary refinements to flow and salinity envelopes, pollutant load reduction goals, and changes to faci lity operations and implementation priorities.

Research and monitoring in the Caloosahatchee and St. Lucie River Watersheds have been ongoing for more than 40 years (Phillips, 1960). Continued monitoring with the integration of research and modeling will establish scientif ically sound performance measures and support improvements to the Caloosahatchee River Estuar y through the adaptive management process.

8.4.1 Monitoring Assessment

The environmental monitoring in the Caloosah atchee River Watershed RWQMP has two major purposes: (1) to quantify long-term change and (2) to support adaptive management. Quantification of long-term change measures pr ogress towards program goals such as meeting any adopted nutrient TMDLs. The monitoring pr ogram includes establishi ng a goal/target, the systematic collection of data, using that data to measures change or progress towards the goal/target, and determining when modifica tions to the project are required.

The objectives of the RWQMP were already id entified in Section 8.2 above. One of the objectives is to build upon existing monitoring programs. A brief summary of the existing programs is provided below and detailed discussi on of the programs can be found in Chapter 4 of the RWQMP in Appendix E

.

8.4.1.1 Existing Watershed Monitoring Programs

Existing watershed monitoring programs include flow monitoring and water quality monitoring:

• Flow Monitoring Program: The existing flow monitoring is conducted daily at the major water control structures along the Ca loosahatchee River (S-77, S-78, and S-79). Currently, nine hydrologic data flow sites collect data and provide information for calibration of watershed loading models a nd estuarine hydrodynamic models. Three of
those stations are located in the Caloosahatch ee Estuary, while the remaining six sites are
in tidal tributaries and are maintained by the U.S. Geological Survey (USGS) Department, FDEP, and Lee County.

• Water Quality Moni toring Programs: Water quality monitoring efforts are being
conducted at freshwater site s in the watersheds that eventually drain into the Caloosahatchee Estuary, including the Caloos ahatchee River and its watershed and theChapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-5 Tidal Basins located to the west of S-79. Watershed monitoring efforts are being carried out by several state and local governmenta l agencies and a non-profit organization including SFWMD, Lee County, Ea st County Water Control Distri ct, City of Cape Coral, City of Fort Myers, and Sanibel Captiva Conservation Foundation (SCCF). Monitoring east of S-79 is currently sparse and is only sufficient for determining long-term trends and characterizing the quality of water enteri ng the Caloosahatch ee Estuary at S-79, exiting the East Caloosahatch ee Basin at S-78 and exiting Lake Okeechobee at S-77. The frequency of water quality sampling at S-79 and S-78 may not be sufficient for accurate calculation of load, which requires further inve stigation. Since individual tributaries to
the Caloosahatchee River are not routin ely sampled, tracking progress towards the TMDL at spatial scales smaller than the Ea st and West Caloosah atchee Basins is not possible.

8.4.1.2 Existing Estuarine Monitoring Programs

Existing estuarine monitoring includes salinity monitoring and water quality monitoring:

• Salinity Monitoring : There are currently two salinity monitoring programs in the Caloosahatchee River and Estuary: a SFWMD program and a program recently established by SCCF. The salinity information currently being collected is adequate to determine the frequency and duration of und esirable salinity ranges resulting from Caloosahatchee River discharges at S-79. The FDEP Aquatic Preserves Program has recently established two stations in Matlacha Pass that will further enhance salinity monitoring capability.

• Water Quality Monitoring : The existing water quality monitoring effort established for the estuarine portion of the Caloosahatchee River is being carried out by numerous governmental entities. Organi zations at state, regional, and local levels, as well as universities and private organizations in cluding SFWMD, Charlotte Harbor National Estuary Program, Lee County, cities of Sani bel and Cape Coral, FDEP, SCCF, Florida Fish and Wildlife Research Institute, and Charlotte Harbor Estuaries Volunteer Water Quality Monitoring Network are involved. Sampling in most of the estuarine portion of the study area is sufficient to assess status and trends in water qua lity. However, the lower Caloosahatchee Estuary between Marker 66 and Shell Point is not sampled adequately at this time. Sampling at the head of the estuary, just downstream of S-79, also is not covered adequately.

8.4.1.3 Aquatic Habitat (Oyster and Seagrass) Monitoring

Existing aquatic habitat monitoring includes se agrass monitoring and oyster monitoring.

• Seagrass Monitoring : There are currently six SAV monitori ng efforts in the tidal waters within the CRWPP boundaries, with the sampling conducted by SFWMD’s Restoration
Coordination and Verificati on (RECOVER), FDEP South District, FDEP Charlotte Harbor Aquatic Preserve, and FDEP Estero Bay Aquatic Preserve. Five aerial photography surveys, conducted since 1999, have been used to evalua te incremental and long-term changes throughout the entire region a nd within major sectio ns of the system.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-6 The existing SAV monitoring programs are sufficient for detecting trends and assessing the status of seagrasses in the CRWPP study ar ea on multiple spatial and temporal scales. The two-to-three year frequency of aerial photography surveys is sufficient to detect long-term large-scale changes, but not fr equent enough to account for the impact of extreme drought or storm events.

• Oyster Monitoring : RECOVER currently conducts mo nitoring of oysters in the Caloosahatchee Estuary at six stations. The program measures various aspects of oyster condition, life history, and di stribution. Most parameters are measured monthly or seasonally; the regional distribution of oysters will be mapped every five years (RECOVER, 2007). The present oyster monitoring program is sufficient to detect long term change in population size and physiolo gical condition and to support adaptive management. The working team has reco mmended that measurements (e.g. percent coverage) be standardized when possible.

8.4.2 Research Projects Assessment

Research projects are intended to reduce or e liminate key uncertainties in nutrient load reductions, flow and salinity envelopes, and to optimize the operation pr otocols. The four research projects in the Caloosahatchee River Watershed RWQMP are summarized below. Chapter 5 of the RWQMP provides a detailed description of these projects, and assesses their adequacy in achieving the CRWPP goals/targets.

• Estuarine Nutrient Budget : Over-enrichment with nutrients from urban and agricultural sources is a problem for the Caloosahatchee Estuary. A well-constrained nutrient budget is critical to understanding the origin, magnitude, and management of problematic nutrient loads and guide priori tization for load reductions. The project will construct nutrient budgets for nitrogen (N) and phosphorus (P) for the Caloosahatchee Estuary. Terms in the nutrient budget wi ll be determined by a variety of methods. Some of the terms in the budget can be derived from existing information (i.e. nutrient load at S-79). Others, such as storm water runoff from the Tidal Caloosahatchee Basin, may require a modeling effort. Still others, such as the fl ux of nutrients out of the bottom sediments, may require direct measurement. Results of this project can be used to support water quality modeling efforts that will reduce the uncertainties related to nutrient TMDLs and increase the capability to predict effects of various management measures, including best management practices.

• DO Dynamics : Low oxygen concentrations are ofte n associated with excess nutrient loading and have been a recognized problem in the Caloosahatchee Estuary since the 1980s (DeGrove, 1981). The DO dynamics res earch project will identify the factors causing the DO impairment in the Caloosahatchee Estuary. Once causes are known, appropriate management solutions can be im plemented. The results of this study will provide critical informa tion that will guide the selection of management solutions. This research project supports the CRWP P goal of achieving the TMDL for the Caloosahatchee Estuary and improving DO cond itions in the Caloosahatchee Estuary.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-7 • Low Salinity Zone : Much of the work that suppor ts estimates of minimum and maximum freshwater inflow requirements to the Caloosahatchee Estuary is based on the salinity tolerances of freshwater and marine organisms that inhabit the system. The low salinity zone resear ch project examines elements of the estuarine food web. The ultimate goal is to understand the role of freshwater di scharge and production of fish larvae in the estuary. Results can be applied to establishi ng water reservations, to refining flow and salinity envelopes, and to providing guideli nes for delivery of freshwater to the Caloosahatchee Estuary.

• Light Attenuation in San Carlos Bay : A resource-based method (Corbett & Hale, 2006) is being considered to establish nutrient TMDLs in the Caloosahatchee Estuary. Nutrient load reductions would be based on achieving wa ter clarity in San Carlos Bay that allows enough light for seagrasses to grow to a depth of 2.2 meters. Three major water quality
constituents have been identified that atte nuate light in the Southern Charlotte Harbor: turbidity, colored dissolved or ganic matter, and chlorophyll- a (McPherson & Miller, 1994). This light attenuation re search study will determine how relative contributions to total light attenuation of chlorophyll- a , colored dissolved organic matter, and turbidity vary with season and freshwater inflow in San Carlos Bay. Information from this study will better define controls on light attenuation in San Carlos Bay and the relationship between the TMDL and its resource goal. Results can be used to determine when, and in what conditions, resource light at tenuation goals may be met.

8.4.3 Modeling Assessment

An integrated modeling framework combining the resource-based Valued Ecosystem Component (VEC) approach and linked watershed a nd estuarine models has been used for years
in the Minimum Flows and Levels Program and for CERP-related pr ojects. Integrated or linked
models have been used to simulate the effects of changes in population, land use, or management practices in the watershed on estuarine physics, chemistry, a nd ecology (Wan et. al., 2006). Three existing modeling efforts include the Wa tershed Hydrology and Water Quality Models, the Estuary Hydrodynamic and Water Quality M odels, and the Ecological Response Models.

8.4.3.1 Caloosahatchee River Watershed Hy drology and Water Quality Models

Effective management that aims to protect water quality requires a big picture view of water
resources at the watershed-scale. Watershed mode ls provide the necessary links for this purpose, particularly when it comes to understanding how non-point sources of pollution interact with point sources, and how these jointly affect the downstream water quality. The Watershed Hydrology and Water Quality Models include the Agricultural Filed Scale Irrigation Requirements Simulation/Water Balance (AFSI RS/WATBAL), the Northern Everglades Regional Simulation Model (NERSM), MIKESH E and the Hydrologic Simulation Program Fortran (HSPF) Model for the Ca loosahatchee River Basins TMDL s. The capability of these models is provided in Table 8-1

.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-8 Table 8-1. Capabilities of the Watershed Hydrology and Water Quality Models

8.4.3.2 Estuary Hydrodynamic and Water Quality Models

For the Caloosahatchee Estuar y hydrodynamic and water quality simulation, modeling tools are needed that are capable of: (1) simulating th e impacts induced by the watershed loading; (2) assessing estuary hydrodynamics; an d (3) assessing estuary water qual ity processes. The Estuary Hydrodynamic and Water Quality Models incl ude the Curvilinear Hydrodynamic Three Dimensional (CH3D), Hydrodynamic Salinity Mode l, and the Environmental Fluid Dynamic Code and Water Quality Analysis Simu lation Program (EFDC/WASP) Model for
Caloosahatchee River Basin TMDLs. The capability and water management practice applications of these models are provided in Table 8-2

.

Table 8-2. Capability of the Estuarine Hydrodynamic and Water Quality Models Hydrologic Models

AFSIRS/WATBAL

1. Determines demands from groundwater and surface waters
2. Determines demands for the major irrigated and non-irrigated land uses
3. Determines runoff from land irrigated with ground water
4. From land irrigated with surface water and non-irrigated lands
5. Four basin model covering lands b/t S-77/S-235 and S-79 influencing regional system
NERSM

1. Basin budget/link node implementation of the Regional Simulation Model Subdivided into East and
West Caloosahatchee Basins
2. Simulates 1970-2005 using a 1-day time step
MIKESHE

1. Integrates surface water and groundwater simu lating hydrologic processes in the watershed
2. Includes evaporation, runoff, stormwater detention, river hydraulics, stream management, groundwater withdrawals and recharge provides total daily flow from tidal basin watershed.
HSPF Model for Caloosahatchee River Basin TMDLs

1. Simulates flow and water quality in the freshwater and tidal watersheds
2. Simulates flow and water quality constituents such as temperature, BOD5, N, P, Chlorophyll-a and
DO
3. Provides pollutant load input to the estuar ine hydrodynamic and water quality models

Estuarine Hydrodynamic and Water Quality Model

CH3D Hydrodynamic Salinity Model
1. Predicts circulation and distribution of salinity as influenced by tide, wind, and freshwater flows
2. Predicts spatial and temporal distribution of salinity in estuary
3. Provides salinity and velocity outputs for input to ecological and habitat suitability models
4. Solves three dimensional equations of motion with given computational variables

EFDC/WASP Model for Caloos ahatchee River Basin TMDLs Hydrodynamic/Salinity Component
1. Simulates 1D, 2D, 3D flow transport, and biogeochemical process in surface water systems 2. HSPF provided flow input to the EFDC
model Water Quality Component
1. Simulates eutrophication process involving

phytoplankton growth, nutrient cycling and DO dynamicsChapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-9 8.4.3.3 Ecological Response Model

The Estuarine Ecological Response Model was deve loped based on available literature data to evaluate the influence of watershed hydrology on stream ecosystem health. Currently, it includes the Tape Grass Model and the Habitat Suitability Index (HSI) Models developed for multiple species (three submerged aquatic vegetation species and eastern oyster) in the Caloosahatchee Estuary. The capability and wate r management practice a pplications of these models are provided in Table 8-3

.

Table 8-3 . Capability of the Estuarine Ecological Response Models

8.5 Research and Water Quality Monitoring Program Recommendations

The recommended RWQMP has been formulated to fulfill the objectives and reporting requirements of the CRWPP and to support adaptive management. It builds upon the existing monitoring, research, and modeling co mponents discussed above, and makes
recommendations/modifications to these ef forts to better achieve and assess the objectives/targets of the CRWPP.

8.5.1 Monitoring Needs

The recommended monitoring program has been formulated to fulfill the objectives and reporting requirements of the CRWPP, as we ll as to support adaptive management.

8.5.1.1 Watershed Quality and Flow Monitoring in the Watershed

The RWQMP recommends that the current l ong-term flow monitoring and water quality monitoring conducted in the tidal basin west of S-79 by Lee County, USGS, and FDEP should
continue as it is now planned. BOD 5 and dissolved TKN (DTKN) s hould be added to the water quality parameters measured in the mont hly grab samples. Measurement of BOD 5 is used to quantify the DO demand in oxidation of organic car bon and provide a measur e of labile organic loads to the receiving waters. The most recent water quality m odeling effort in the Caloosahatchee Watershed was undertaken by FDEP for TMDL development and includes
BOD 5 as one of the water quality constituents . DTKN allows the calculation of dissolved organic nitrogen, which constitute s most of the TN load. The following parameters should be considered for inclusion in the monitoring prog ram at specific locations, based on the potential for possible impairments now or in the future : sediment oxygen demand, fecal coliform, total dissolved solids, total ha rdness, iron, copper, lead, arsenic, and zinc. Estuarine Ecological Response Models

Tape Grass Model

1. Integrates both field and lab data to predict effect of environmental variables
2. Calibrated based on measured data variables

HSI Models
1. Provides output based on salinity, temperature, de pt, substrate and high flow frequency for each species
2. Calculates habitat suitability monthlyChapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-10 Eight long-term water quality and flow monito ring sites are proposed along the Caloosahatchee River to provide spatial covera ge necessary for tracking progr ess towards the TMDL and for supporting adaptive management and developmen t of a Basin Management Action Plan. Monthly water quality and continuous flow will be measured at each station allowing calculation of loading to each section of the river. Once problem sections of the river are identified, a secondary level of local mon itoring will be conducted by SFWMD for a limited time period to ascertain the most appropriate BMPs associat ed with the water quality concern identified.

Four short-term water quality a nd flow monitoring sites in canal tributaries flowing into the
Caloosahatchee River are also re commended. These stations will help determine if loads calculated from grab samples accurately reflect the sum of tributary loads. A three-year study is contemplated to help identify hot spots and support calibration of watershed models.

8.5.1.2 Water Quality and Salinity Monitori ng in the Caloosahatchee Estuary

Salinity monitoring stations maintained by SFWMD and SCCF should be continued. In general, the water quality monitoring condu cted by all agencies in estuar ine and marine waters of the study area is adequate to meet program goals and should continue. Some redundancies have been identified; the removal of one existing Lee County station and five SFWMD/Florida International University stations is recommen ded. Because the Caloosahatchee Estuary is currently under-sampled spatially , four historical stations fr om the Caloosahatchee Estuary Water Quality Program should be re-insta ted (CES02, CES05, CES07, and CES08). BOD 5 and DTKN should be added to the water quality parame ters measured in the monthly grab samples in
estuarine and marine waters in order to mon itor progress towards meeting any adopted nutrient
TMDLs.

8.5.1.3 Aquatic Habitat Monitoring

The present oyster monitoring prog ram, conducted by RECOVER, is sufficient to meet the goals of CRWPP and is recommended to continue, along w ith mapping of oyster beds at a frequency of at least every five years. The current mu lti-agency approach to seagrass monitoring in the study area should also continue . SAV aerial photography survey s should continue at the historical sampling frequency of every two-to-t hree years. It is also recommended that measurements (e.g. percent coverage) be standardized where possible.

8.5.2 Prioritization of Research

Each major project (e.g. Nutrient Budget) ca n be broken down into several components. Examination of each project shows that severa l projects may have common components. The
commonalities between com ponents of the various projects are summarized in Table 8-4 of the RWQMP. The source of data for each componen t is given (existing data, new measurements, model, etc). Components funded in any given y ear may be prioritized according to the number of projects to which they belong.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-11 Table 8-4. Commonalities between Component s of the Various Projects

Research Projects Research Component
Nutrient Budget DO Dynamics Low Salinity
Zone Light
Attenuation Source

INPUTS
Franklin Lock Loads (S-79) √ √ √ √ Monitoring

Tidal Basin Loads
Surface Flows
Groundwater
Wastewater
Treatment Facilities √ √ √ √ √ √ √ √ √ √ √ √ Model/Measurements
Model/Measurements
New Measurements

Gulf of Mexico √ Model for Flow
Literature Concentration Atmospheric Deposition √ Literature/ Data Analysis

INTERNAL CYCLING Primary Productivity/
Water Column Respiration √ √ √ √ New Measurements

Organic Matter Decomposition (incl DON) √ √ New Measurements

Benthic Nutrient Flux √ √ New Measurements
DO Time Series √ √ New Measurements
INTERNAL CYCLING San Carlos Bay Times
Series
Color Turbidity Chlorophyll- a TSS PAR (Kd) √ √ √ √ √ New Measurements
New Measurements
New Measurements
New Measurements
New Measurements
OUTPUTS Export to Gulf √ Model
Denitrification √ Benthic Flux Project
BIOMASS
Larval/ Juvenile Fish Zooplankton Benthic microalgae Phytoplankton (species/groups) √ √ √ √ New Measurements

8.5.3 Model Refinements

The following refinements to the existing mode ls are included in th e recommended RWQMP:

• Further evaluate and refine the watershed hydrology/water quality models with longer period of calibration and valida tion to better simulate nutr ient cycling and DO dynamics in major canals.Chapter 8

Caloosahatchee River Watershed Protection Plan January 2009
8-12 • Integrate a user-friendly graphi c user interface for manageme nt of the geo-spatial data, such as land use change and irrigation demands.

• Refine Caloosahatchee Estuary CH3D m odel with groundwater seepage data and sediment transport scheme including inte gration with a water quality component.

• Update estuary water quality models with newly collected data including the benthic fluxes, diurnal DO concentrations, and sediment and turbidity in order to simulate the impact in the estuary from watershed loading for adaptive management. Also, the simulation period also needs to be ex tended to cover a longer time period.

• Expand the Estuarine Ecological Response Model to include ot her VECs such as seagrass
and fish larvae.

• Incorporate the HSI models into ArcGIS to portray responses spatially and temporally to facilitate policy decisions. The models need to be further validated with comprehensive monitoring data. A comprehensive assessment is also necessary to evaluate the model for both long-term and short-term applications.

• Convert the SAV model to a common platfo rm, such as a FORTRAN program with linkages to spreadsheets or another user-fri endly interface, to increase computation efficiency. Also, expand the SAV model for broader applications to include other SAV species, such as Halodule wrightii and Thalassia testudinum

.

### CHAPTER 9

PREFERRED PLAN PROJECTS AND ACTIONSChapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-i TABLE OF CONTENTS

9.0 Preferred plan projects and actions.................................................................................. 9-1
9.1 Watershed Construction Project ...................................................................................9-1
9.1.1 Water Quantity/Storage .......................................................................................9-1
9.1.1.1 Reservoirs ................................................................................................ 9-1
9.1.1.2 Aquifer Storage and Recovery.................................................................9-2
9.1.1.3 Alternative Water Storage/Disposal ........................................................9-2
9.1.2 Watershed Water Quality Projects.......................................................................9-2
9.1.2.1 Water Quality Treatment Areas and Stormwater Treatment Areas.........9-3
9.1.2.2 Stormwater Management.........................................................................9-3
9.1.2.3 Waste/Wastewater Management..............................................................9-4
9.1.2.4 Innovative Nutrient Cont rol Technologies ..............................................9-4
9.1.3 Land Management and Restoration Projects .......................................................9-5
9.1.3.1 Wetland Restoration................................................................................. 9-5
9.1.3.2 Land Conservation................................................................................... 9-5
9.1.3.3 Integrated Growth Management and Restoration....................................9-5
9.2 Watershed Pollutant Control Program..........................................................................9-5
9.2.1 SFWMD Nutrient Source Control Programs.......................................................9-6
9.2.2 FDACS Nutrient Source Control Programs.........................................................9-6
9.2.3 FDEP Pollutant Source Control Programs...........................................................9-7
9.2.4 Other Pollutant Source Control Programs ...........................................................9-8
9.2.5 Local Programs ....................................................................................................9-8
9.3 Watershed Research and Water Quality Monitoring Program .....................................9-8
9.3.1 Monitoring Program.............................................................................................9-9
9.3.1.1 Watershed Monitoring – Water Quality ..................................................9-9
9.3.1.2 Estuary Monitoring – Water Quality, Flow, Salinity, and Aquatic
Habitat......................................................................................................9-9
9.3.2 Research Program ..............................................................................................9-11
9.3.2.1 Research Project Priorities.....................................................................9-11
9.3.3 Modeling Needs and Recommendations ...........................................................9-13
9.3.3.1 Watershed Hydrology and Water Quality Modeling.............................9-13
9.3.3.2 Estuary Hydrodynamic and Water Quality Modeling ...........................9-13
9.3.3.3 Estuarine Ecologic Response Modeling ................................................ 9-14
9.4 Preferred Plan Implementation ...................................................................................9-14
9.4.1 Real Estate Requirements ..................................................................................9-14
9.4.2 Operations, Maintenance, Permitting, and Monitoring .....................................9-15
9.4.2.1 Operations & Maintenance ....................................................................9-15
9.4.2.2 Permitting...............................................................................................9-15
9.4.2.3 Monitoring .............................................................................................9-16
9.4.3 Phased Implementation......................................................................................9-17
9.4.3.1 Phase I Implementation Benefits ...........................................................9-19
9.4.4 Cost Estimates and Funding Sources.................................................................9-19
9.4.4.1 Phase I Implementation Cost Estimate ..................................................9-19
9.4.4.2 Future Implementation Cost Estimate ...................................................9-21
9.4.4.3 Funding Sources and Cost-S haring Opportunities................................. 9-21Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-ii 9.4.5 Implementation Challenges ...............................................................................9-22
9.4.6 Plan Refinement and Revisions .........................................................................9-22
9.4.6.1 Process Development and Engineering .................................................9-23
9.4.6.2 Public Involvement ................................................................................ 9-27
9.4.7 Force Majeure .................................................................................................... 9-27

LIST OF TABLES

9-1 Components and Commonalities of Major Research Projects in the Caloosahatchee River Watershed and Estuary .................................................................................................. 9-15 9-2 Existing Caloosahatchee River Watershed Models ....................................................... 9-16 9-3 Phase 1 (2009-2012) Projects and Implementation Status ............................................ 9-18Chapter 9

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9-1 9.0 PREFERRED PLAN PROJECTS AND ACTIONS

The Caloosahatchee River Watershed Protection Plan (CRWPP) was deve loped in response to the Northern Everglades and Estuaries Prot ection Plan (NEEPP) le gislation, Section 373.4595, Florida Statutes (F.S.) (2007). This legislati on requires the CRWPP to include a Construction Project, a Watershed Pollutant Control Program, and a Research and Water Quality Monitoring Program (RWQMP). This chapter provides an overview of all three components, which collectively comprise the prefe rred Plan and describes the plan implementation strategy, initial costs and funding estimates, cost share opportuniti es, and the process for plan refinements and
revisions.

9.1 Watershed Construction Project

The Caloosahatchee River Watershed Constructi on Project is detailed in Chapter 6. The following sections highlight the Caloosahat chee River Watershed Construction Project (Construction Project) features . The features are broadly grouped into the following three general categories: (1) Water Quantity/Storage , (2) Water Quality, and (3) Land Management and Restoration. Individual projects are cat egorized based on their primary objective and discussed in the following sections (See Table 6.4-6).

9.1.1 Water Quantity/Storage

The Construction Project water quantity/storage projects are designed to capture and store
stormwater runoff in the Caloos ahatchee River Watershed and include aboveground reservoirs, alternative water storage/disposal projects, and aquifer storage and recovery (ASR) wells. These projects include both loca l and regional projects.

9.1.1.1 Reservoirs

Aboveground reservoirs are the most common t ype of surface water storage features. Aboveground reservoirs typically comprise large areas of land surrounded by levees that are used to store water. This water is typically withdrawn from the Caloosahatchee River Watershed and stored during the wet season to provide attenu ation and reduce the discharge of freshwater in the estuary. In the dry season, this water can then be released to reduce the demand on the
Caloosahatchee River for freshwater to be used for irrigation, or may provide flows needed for environmental purposes. These types of reservoirs also provide ancillar y quality benefits;
nutrients and other contaminants te nd to settle out within the reser voir. Several large reservoirs are currently being designed and constructed in the greater Everglades ecosystem.

Reservoir storage sites are planned at vari ous sites throughout the Caloosahatchee River Watershed, including:

• C-43 Distributed Reservoir (CRE-LO 41);

• Harns Marsh Improvements – Phase I & II (CRE 18);

• Harns Marsh Improvements – Phase II Final Design ECWCD (CRE 19);

• Yellowtail Structure Construction – ECWCD (CRE 20);Chapter 9

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9-2 • Hendry County Storage (CRE 21);

• Hendry Extension Canal Widening (C onstruction) – ECWCD (CRE 22);

• East Caloosahatchee Storage (CRE 128); and

• Caloosahatchee Storage – Additional (CRE 128a).

9.1.1.2 Aquifer Storage and Recovery

Aquifer Storage Recovery (ASR) involves injecti ng water into an aquifer through wells and then pumping it out from the same aquifer when neede d. The aquifer essentially functions as a water bank. Deposits are made in times of surplus, typically during the rainy season, and withdrawals
occur when available water is n eeded, typically during a dry period.

Interest and activity in ASR in southern Florid a have greatly increased over the past 10 to 15 years. In south Florida, ASR wells have typically been used to store excess freshwater during the wet season and subsequently recover it duri ng the dry season for us e as an alternative drinking water supply source. Ma ny utility-operated ASR facilities now have wells completed in deep confined aquifers and available for this purpose. Large-scale application of the ASR technology is under evaluation as a storage option in the Comprehe nsive Everglades Restoration Plan (CERP). The Construction Project includes the Cape Coral Canal Stormwater Recovery by ASR (CRE 77) and the Rehydrate Lee County We ll Fields – south of Hwy 82 (CRE 122) projects.

9.1.1.3 Alternative Water Storage/Disposal

Alternative water storage/disposal projects esse ntially prevent runoff from reaching the regional drainage system or improve the timing of its deli very, and can be develope d on available private, public, and tribal lands. They ar e used to store and/or dispose of excess water by capturing it prior to runoff or pumpi ng it from areas or canals with ex cess water, and hol ding it on-site. Alternative water storage/dispos al projects typically require minimal design, engineering, and construction effort, as compared to constructed reservoirs, because of the use of low technology approaches. Approaches include the use of existing infrastructure, such as pumps to move water to the desired area, and weirs, berms, and sma ll impoundments needed to detain the water in the facility. If they are established on existing we tlands, they are designed and operated to improve the existing wetland functions.

The Construction Project includes the following al ternate water storage/ disposal projects: Alternate Water Storage (LOER) – Barron Wate r Control District ( CRE-LO12g), Recyclable Water Containment Areas (RWCA) (CRE 01), an d Recycled Water Containment Area (RWCA) in the S-4 Basin (CRE 02).

9.1.2 Watershed Water Quality Projects

Caloosahatchee River Watershed water quality proj ects focus on reducing total nitrogen (TN) and total phosphorus (TP) loading within and from the watershed. The projects are a
combination of the source control efforts descri bed in Section 9.2 and projects including water quality treatment areas/stormwater treatment areas (STAs), stormwater management,Chapter 9

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9-3 waste/wastewater management, and innovative nut rient control technol ogies (e.g., managed aquatic plant systems, Hybrid Wetland Treatment Technology).

9.1.2.1 Water Quality Treatment Areas a nd Stormwater Treatment Areas

Water quality treatment areas are constructed we tlands designed for optimal nutrient removal. When water flows through flooded wetland cells, pl ants and algae remove nutrients from the
water. Constructed wetlands have been shown to be very efficient in reducing nutrient loads and
concentrations.

STAs, a type of water quality treatment area, ar e constructed wetlands that have been used very successfully in South Florida to treat nutrient-rich stormwater runoff. Ty pically, wetland cells in STAs include emergent vegetation or a combina tion of emergent and submerged vegetation.

There are both regional scale and local scale water quality treatment areas and STAs included in the Construction Project. The regional scal e water quality treatment areas within the
Caloosahatchee River Watershed include the C-43 Water Quality Treatment Demonstration Project (BOMA Property) (CRE 10), the Cal oosahatchee Ecoscape Water Quality Treatment Area (CRE 11), East Caloosahatchee Water Qual ity Treatment Area (CRE 05), and the West Caloosahatchee Water Quality Treatment Area (CRE 13). The Construction Project also includes the Clewiston STA (CRE-LO 92), Cal oosahatchee Area Lakes Restoration (Lake Hicpochee) (CRE 04), and the West La ke Hicpochee Project (CRE-LO 40).

9.1.2.2 Stormwater Management

The installation or upgrade of an urban stormw ater management system can improve surface water quality in the Caloosahatch ee River Watershed. A variety of structures (e .g. wet detention ponds, vegetated swales, diversion weirs, baffle boxes, etc.) within a surface water management system can attenuate surface water flow to in crease percolation for groundwater storage, facilitate settling, and promote nutrient uptake prior to receivi ng water discharge. System retrofit projects and local government St ormwater Master Plan implemen tation projects are management measures that will improve the conveyance of stormwater during storm events and reduce pollutant loadings from urban runoff.

The Construction Project includes a variety of stormwater projec ts. These projects generally consist of the construction of filter marshes, cons truction of facilities to transfer water between basins, installation of water cont rol structures, repair or improve ment of existing water control structures, and widening of canal s to provide additional storage and attenuation. These projects
are constructed on both a local a nd regional scale. The projects consist of the following:

• Lehigh Areas Wastewater Treatment and Stormwater Retrofit (CRE 29);

• Billy Creek Filter Marsh Phase I and II (CRE 45);

• Manuel’s Branch Silt Reduc tion Structure (CRE 48);

• Manuel’s Branch East & West Weirs (CRE 49);

• North Fort Myers Surface Wa ter Restoration (CRE 59);

• Yellow Fever Creek/ Gator Slough Transfer Facility (CRE 64);

• Cape Coral Wastewater Treatment and Stormwater Retrofit (CRE69);Chapter 9

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9-4 • City of LaBelle Stormwater Mast er Plan Implementation (CRE 121);

• North Ten Mile Canal Stormwater Treatment System (CRE 123);

• Carrell Canal (FMCC) Water Qual ity Improvements (CRE 124); and

• Shoemaker-Zapato Canal Stormwater Treatment (CRE 125).

9.1.2.3 Waste/Wastewater Management

The Construction Project includes several waste or wastewater management projects. These include projects to eliminate septic systems and install central sewer systems, the interconnection of wastewater facilities to provi de an additional source of reclai med water, and the upgrading of existing wastewater treatment plants. The Cons truction Project includes the following projects: Leigh Acres Waste Water Treatment & Stormwater Retrofit (CRE 29), Cape Coral Reclaimed Water Interconnect (CRE 126), and Wastewater Treatment Plant Upgrade and Reclaimed Water (CRE 129).

9.1.2.4 Innovative Nutrient Control Technologies

9.1.2.4.1 Managed Aquatic Plant Systems

Managed aquatic plant systems are aquatic plan t-based water treatment units. The technology involves routing nutrient loaded stormwater into ponds th at are vegetated with plants that have enhanced ability to absorb and assimilate nutrient s. A variant of managed aquatic plant systems, which is currently proposed as a management measure to be in cluded in the CRWPP, is known as the Algal Turf Scrubber TM . This technology, developed by HydroMentia, Inc., involves the
cultivation of a mixed commun ity of periphytic al gae that are culture d on an engineered geomembrane. The membrane sits on a grid upon which nutrient-rich waters are discharged. The Construction Project include s the Powell Creek Algal Turf Scrubber (CRE 57). The Powell Creek project will include a pilot project with th e potential for a large scale project, depending on the outcome of the pilot project.

9.1.2.4.2 Hybrid Wetland and Chemical Treatment

Hybrid Wetland Treatment Technology combines th e strengths of the two top ranked nutrient removal technologies, namely treatment wetlands and chemical injection systems. This technology forms a synergistic rela tionship that results in nutrie nt removal efficiencies beyond those attainable by eith er technology separatel y, but with lower capital and operating costs. Optimization of system performa nce is achieved by adju sting hydraulic retent ion time (area of facility) and/or chemical dosing rates. H ybrid Wetland and Treatment Technology has been previously demonstrated to reduce P concentra tions from over 1,000 parts per billion (ppb) to less than 100 ppb (Watershed Technologies, Inc. 2007).

Chemical treatment involves application of chemi cals into stormwater runoff to aid in reduction of contaminant loads and concentrations, and of turbidity (suspended solids) in the water by promoting the coagulation and flocculation of susp ended solids. Chemical treatment can be used in combination with wet detention of stormwater, treatment of runoff prior to storage, or with supplemental treatment associated with reservoi rs or STAs. Currently, there are no chemical treatment or Hybrid Wetland and Treatment Technology management measures in theChapter 9

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9-5 Construction Project. However, these technologi es will be further evaluated during the plan refinement process and may be incorporated in future plan updates.

9.1.3 Land Management and Restoration Projects

The Construction Project management measures related to land management and restoration include creation and restoration of wetlands, la nd conservation, and inco rporation of growth management techniques and initiativ es that integrate environmental objectives into urban growth planning.

9.1.3.1 Wetland Restoration

Natural wetlands sequester surface water flows, r echarge the aquifer, an d provide water quality treatment through assimilation and sedimentati on. Wetland restoration includes enhancing degraded wetlands and restor ing areas that were histor ically wetlands.

The Construction Project includes a variety of wetlands projects , both at the local and regional scale: Spanish Creek/Four Corners Environmental Restoration (CRE 44), Ca loosahatchee Creeks Preserve Hydrological Restoration (CRE 53), an d Rehydrate Lee County Well Fields – south of Highway 82 (CRE 122).

9.1.3.2 Land Conservation

Conservation of natural areas in urban settings provides both natural and social benefits. The goal of land conservation programs is to protect co astal and estuarine lands considered important for their ecological, conservational, recreational, historical, or aesthe tic values. There are programs that provide state and local government s with matching funds to purchase significant coastal and estuarine lands, or conservation easements on such lands, from willing sellers. The Construction Project includes the Coastal an d Estuarine Land Conservation Program (CRE-LO 09), Florida Ranchlands Enviromental Servic es Project (CRE-LO 87c), and the Farm and Ranchland Partnerships (CRE-LO 91).

9.1.3.3 Integrated Growth Management and Restoration

This category includes programs and projects that integrate environmental restoration objectives with urban growth initiatives . Planning and economic incentiv es are typically provided to encourage the use of innovative and flexible pl anning, development strate gies, and creative land use planning techniques that minimize the foot print of developments while conserving natural lands and open spaces. The Construction Project includes both the Rural Land Stewardship Area Program and the Comprehensive Planni ng & Growth Management (CRE-LO 68).

9.2 Watershed Pollutant Control Program

Pollutant source control is integral to the success of any water resource protection or restoration program. Nutrient source controls refer to activities and measur es, also referred to as Best Management Practices (BMPs), that can be utili zed on agricultural and non-agricultural lands to ensure that the amount of phosphorus (P) and nitrog en (N) in off-site di scharge is minimized, thereby preventing nutrients from enteri ng the Caloosahatchee River Watershed.Chapter 9

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9-6 Implementation of source controls is a relatively cost-effective pollutant reduction and prevention measure, as it is typically less expe nsive to prevent pollution than to remediate its impacts. There are presently several existi ng and proposed nutrient source control programs
within the Caloosahatchee River Watershed. These programs are developed and implemented cooperatively by the South Florida Water Manageme nt District (SFWMD), Florida Department of Environmental Protection (FDEP), and Florid a Department of Agri cultural and Consumer Services (FDACS) in collaboration with lo cal governments and private landowners.

The Caloosahatchee River Watershed Pollutant Control Program is designed to be a multifaceted approach to reducing pollutant loads. The program includes improving the management of pollutant sources within the Caloosahatch ee River Watershed through implementation of regulations and BMPs and development and im plementation of improved BMPs focusing on N and P. This section provides an overview of the program. Please refer to Chapter 7 for the complete Caloosahatchee Lucie River Watershed Pollutant Control Program.

9.2.1 SFWMD Nutrient Source Control Programs

The Environmental Resource Permit (ERP) Program regulates activities involving the alteration of surface-water flows, and include s activities in uplands that alte r stormwater runoff, as well as dredging and filling in wetlands and other surface waters. Generally, the program’s purpose is to ensure that alterations do not degrade water quality, compromise flood protection, or adversely affect the function of wetland systems.

The ERP Program only applies to new or modified development. It operates on the assumption that permit requirements will result in adequate water-storage capacity and no increase in P loading. SFWMD has initiated development of an ERP basin rule with specific supplemental criteria designed to result in no increase in total runoff volume from new development that discharges ultimately to Lake Okeechobee and/or th e Caloosahatchee or St. Lucie estuaries. The tentative date for rule adoption is mid to late 2010.

The Regulatory Nutrient Source Control Program, (Chapter 40E-61, F.A.C.), adopted in 1989, was a result of the Lake Okeechobee Surface Water Improvement and Management (SWIM) Plan to provide a regulatory source control prog ram specifically for P. The NEEPP legislation expanded the program boundary to the Caloosahatchee River Watershed and included N, in addition to P, as the focus of nutrient source controls. The progr am applies to new and existing agricultural and non-agricultural activities with the goal of reducing nutri ents in off-site discharges.

SFWMD plans to propose modifications to Chap ter 40E-61, F.A.C. for consistency with the goals and objectives of NEEPP. To ensure co nsistency with the CRWPP, rule development is expected to begin in 2009.

9.2.2 FDACS Nutrient Source Control Programs

FDACS has adopted, by administrative rule, ag ricultural BMPs addressing containerized nursery, vegetable and agronomic crop and citrus land uses in the Caloosahatchee River Watershed. FDACS is currently developing and will be adopting BMP programs for cow/calf,Chapter 9

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9-7 sod and equine operations. BMPs for all agricultural land uses ar e expected to be adopted by early 2009.

In February 2008, FDACS in itiated rule developmen t to control the land application of animal
wastes in the Caloosahatchee River Waters hed. The proposed rule includes minimum application setbacks from wetlands and all surf ace waters. Landowners who apply more than one ton per acre of manure must develop conser vation plans approved by the U.S. Department of Agriculture/National Resour ce Conservation Service (USDA/NR CS). The conservation plan must specifically address the a pplication of animal wastes, a nd the landowner must conduct soil testing to demonstrate the need for manure applic ation. All use of an imal manure must be recorded and included in the operation’s overall nutrient management plan. FDACS expects to complete rule making for this effort by the end of 2008.

In August 2007, FDACS adopted a st atewide Urban Turf Fertilizer Rule. The rule limits the P
and N content in fertilizers bei ng applied to urban turf and lawn s, thereby limiting the amount of those compounds reaching Florida’s water res ources. It requires that, by July 1, 2009, all fertilizer products labeled for us e on urban turf, sports turf, and lawns be limited to the amount of P and N needed to support healthy turf maintena nce. As a component of the Lake Okeechobee and Estuary Recovery (LOER) Pl an established in October 2005, th e new rule is an essential component to improve water quality through nutr ient source control. See Sections 7.1.2 for a more in-depth description of FDAC S nutrient source control programs.

9.2.3 FDEP Pollutant Source Control Programs

FDEP is responsible for several existing and pl anned source control programs primarily targeting urban and non-agricultural i ssues. These programs include:

• Initiatives to improve existing stormw ater and wastewater infrastructure;

• Implementation of pollutant reduction plans for municipal stormwater management systems;

• Land development regulations to pr omote proper stormwater treatment;

• Enhancement to existing regulations from the management of domestic wastewater
residuals within the Caloos ahatchee River Watershed;

• Coordination with applicable authorities on septage disposal to en sure that nutrient loadings are considered; and

• Administering the National Pollution Discha rge Elimination System (NPDES) permit

program.

As a result of these programs, local government s have constructed numerous stormwater retrofit projects and are continuing to pursue additional projects to improve the quality of water in urban
runoff. Local utilities have al so aggressively pursued upgrad es to wastewater management systems to improve water qualit y. FDEP also administers the statewide Municipal Separate Storm Sewer Systems (MS4) Program. The MS4 Program requires that a stormwater management plan be developed to reduce the discharge of pollutants to the maximum extent practicable to protect water qual ity and comply with the water quality requirements of the Clean Water Act (CWA). Please refer to Chapter 7 for a complete description of all FDEP programs.Chapter 9

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9-8 9.2.4 Other Pollutant Source Control Programs

Launched in October 2005, the Florida Ranchlands Environmental Services Project established a program under which ranchers in the northern Everglades waters heds can sell environmental services of water retention, P load reduction, and wetland habitat expansion to agencies of the state and other willing buyers. To document the level of envir onmental services provided by ranch water-management projects, the Florida Ra nchlands Environmental Services Project will field test different methods of using mon itoring and modeling of hydrology, water and soil chemistry, and vegetation change. The Florida Ra nchlands Environmental Services Project is being implemented through a co llaboration of the World Wild life Fund, eight participating ranchers, USDA/NRCS, FDACS, SFWMD, and FDEP.

The Florida Yards and Neighborhoods Program is an excellent example of a nonstructural program. It is a partnership of the University of Florida, Institute for Food and Agricultural Sciences (UF/IFAS), Florida’s water manage ment districts, FDEP, the National Estuary Program, the Florida Sea Grant College Program, concerned citizens, members of private industry and numerous other nongovernmental agencies . It is implemented through the counties’ UF/IFAS Cooperative Extension Service. Th e program addresses the serious problems of pollution in stormwater runoff, water shortages, and disappearing habitats by enlisting Floridians to preserve and to protect our natural resources.

9.2.5 Local Programs

The Southwest Florida Regional Planning Council approved a Stormwater Resolution (SWFRPC Resolution #2008-11) providing spec ific recommendations and guide lines to be considered by local government jurisdictions in Southwest Fl orida for the regulation, control, use, and treatment of stormwater containing N and/or P. Additionally, the Southwest Florida Regional Planning Council has approved a Wastewater Resolution (SWFRPC Resolution # 2007-02) providing specific recommendations and guidelines to be considered by local government jurisdictions in Southwest Florida for the regulati on and control of treated wastewater discharges containing N and/or P. The Southwest Florida Regional Pla nning Council has also approved a Wastewater Package Plant Resolution (SWF RPC Resolution # 2007-05) providing specific recommendations and guidelines to be consid ered by local government jurisdictions in Southwest Florida for the regulat ion and control of treated wast ewater discharges from small wastewater treatment facilities (Pack age Plants) containing N and/or P.

Lee County and the City of Sanibel have enact ed fertilizer ordinances that provide more restrictive residential and commercial app lication schedules. Additionally, education, certification, and enforcement capability have been included to assure compliance.

9.3 Watershed Research and Water Quality Monitoring Program

The recommended RWQMP has been formulated to fulfill the goals and reporting requirements of the CRWPP and support adaptive management. It builds upon the existing monitoring, research, and modeling components discussed above, and makes recommendations/modifications
to these efforts to better achieve and assess the goals/targets of the CRWPP.Chapter 9

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9-9 9.3.1 Monitoring Program

The monitoring program consists of a waters hed monitoring component and an estuarine monitoring component.

9.3.1.1 Watershed Monitoring – Water Quality

As stated previously under Section 8.4.1, monito ring east of S-79 is currently sparse. The frequency of water quality sampling at S-79 and S-78 may not be sufficient for accurate calculation of load and this issue requires inve stigation. Identification of problem areas and tracking progress toward the Total Maximum Daily Load (TMDL) at spatial scales smaller than
the East and West Caloosahatchee basins are not possible with existing monitoring activities.
Recommendations include the ad dition of eight long-term wate r quality and flow monitoring sites along the reach of the Caloosahatchee Rive r, east of S-79. These additional sites will provide the spatial coverage necessary for tr acking progress towards the TMDL, and will support adaptive management and development of a Ba sin Management Action Plan. Monthly water quality and continuous flow will be measured at each station, allo wing calculation of loading to
each reach of the Caloosahatchee River. Four sh ort-term water quality an d flow monitoring sites in canal tributaries flowing into the river ar e also recommended. These stations will help determine if loads calculated from reach samples accurately reflect the sum of tributary loads. Additionally, two new water quality parameters are recommended to be added to the monthly suite of water quality grab sample analytes in order to support progress towards meeting any adopted nutrient TMDLs. These parameters are: dissolved total Kjeldahl nitrogen (DTKN) and 5-day biological oxygen demand (BOD 5 ). Measurement of BOD 5 will support modeling efforts and provide a measure of the labile organic lo ads to the receiving waters. DTKN allows the calculation of dissolved organic nitrogen, which often constitutes most of the TN load. The following parameters should be considered for in clusion in the monitoring program, based on the potential for possible impairments now or in the future: sediment oxygen demand, fecal coliform, total dissolved solids, total hardness, iron, copper, l ead, arsenic, and zinc. The sampling suite will be re-evaluated at th e three-year CRWPP re-evaluation period.

In addition, the RWQMP recognizes that a SFWMD-sponsored source control monitoring program, to measure the success of the collectiv e Source Control Progra ms (SFWMD, FDEP and FDACS) at the sub-watershed level, is und er development and may refine the proposed Caloosahatchee Tributary Monitoring Program. At the sub-watershed level, monitoring activities associated with the program will a ssess the collective success of pollutant source control BMPs, compliance with pollution reduction targets, and the need for additional BMPs or optimization of existing BMPs. At the local level, this monitoring will identify priority areas of water quality concern and provide data to enhance performance of downstream treatment facilities. This program also will provide data th at can be used in adaptive management, as well as modeling and tracking of pr ogress towards achieving TMDLs.

9.3.1.2 Estuary Monitoring – Water Quality, Flow, Salinity, and Aquatic Habitat

Existing estuarine monitoring includes water quality, flow, salinity, submerged aquatic vegetation, and oyster habitats.

Water Quality Monitoring : The existing water quality monitoring effort established for the estuarine portion of the Caloosahatchee Rive r is being carried out by SFWMD, FDEP, LeeChapter 9

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9-10 County, City of Cape Coral, City of Sanibel, Charlotte Harbor National Estuary Program, Florida International University (FIU), Sanibel-Captiva Conservation Foundation (SCCF), Florida Fish and Wildlife Research Institute, and the Charlo tte Harbor Estuaries Volunteer Water Quality Monitoring Network. In general, the water qua lity monitoring conducted by all agencies in estuarine and marine waters of the study area ar e adequate to meet program goals and should
continue. Some redundancies have been identi fied; the removal of one existing Lee County
station and five SFWMD/FIU stations are recomm ended. Because the Caloosahatchee Estuary is currently under-sampled spatially , four historical stations fr om the Caloosahatchee Estuary Water Quality Monitoring Program should be re -instated (CES02, CES05, CES07 and CES08).

As recommended for watershed monitoring, BOD 5 and DTKN should also be added to the water quality parameters measured in the estuary mo nthly grab samples. The following parameters
should be considered for inclus ion in the monitoring program, ba sed on the potential for possible impairments now or in the future: sediment oxygen demand, fecal coliform, total dissolved solids, total hardness, iron, c opper, lead, arsenic, and zinc.

Flow Monitoring : Historically, there have b een few measurements of freshwater inflows to the Caloosahatchee Estuary from the Tidal Basin we st of S-79. To quantif y these flows, eight additional flow sites and one cooperative site with Lee County were added by the USGS, in cooperation with Florida Department of Envir onmental Protection (FDEP). The current longterm flow monitoring conducted in the tidal ba sin west of S-79 by Lee County, United States Geological Survey and FDEP should c ontinue as it is now planned.

Salinity Monitoring : Salinity monitoring is essential to supporting water quality modeling, refining salinity envelopes, a nd quantifying the goal of reducing undesirabl e salinity ranges. Salinity monitoring stations maintained by SFWM D and SCCF are sufficient and should also be
continued.

Submerged Aquatic Vegetation (SAV) Monitoring : There are currently six SAV monitoring
efforts in the tidal waters within the CRW PP boundaries. There have been five aerial photography surveys conducted since 1999. Aerial survey information has been used by various organizations to evaluate incremental and l ong-term changes throughout the entire region and within major sections of the system. The exis ting programs are sufficient for detecting trends and assessing the status of seagrasses in the CRWPP study area on multiple spatial and temporal scales. The current multi-agency approach to seagrass monitoring in the study area should also continue. SAV aerial photography surveys should continue at the histor ical sampling frequency of every two-to-three years.

Oyster Monitoring : Monitoring of oysters in the Caloosahatchee Estuar y is currently conducted by the Restoration Coordination an d Verification Program (RECOVER ) at six stations. Various aspects of oyster condition, life history and dist ribution are measured. While most parameters are measured monthly or seasonally, the regional distribution of oysters is mapped every five years (RECOVER, 2007). The current oyster monitoring program conducted by RECOVER should continue, along with mapping of oyster beds, at a planned frequency.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-11 9.3.2 Research Program

Research projects are intended to reduce or eliminate key uncerta inties in the proposed TMDL and in flow and salinity envelope s, and to optimize th e operation protocols. The four research projects in the RWQMP are summarized below. Chapter 5 of the RWQMP provides a detailed description of these programs, and assesses their adequacy in achieving the CRWPP goals/targets.

• Estuarine Nutrient Budget : Over-enrichment with nutrients from urban and agricultural sources is a problem for the Caloosahatchee Es tuary. This project will construct nutrient budgets of TN and TP. Results of this pr oject can be used to support water quality modeling efforts that will reduce the uncer tainties related to nutrient TMDLs and increase the capability to predict effects of various management measures, including
BMPs.

• Dissolved Oxygen (DO) Dynamics : This research project will identify the factors causing the DO impairment in the Caloosah atchee Estuary. Understanding of DO dynamics will also help to identify impact s from the pollutant loads to estuarine ecosytems. Once causes are known, appropriate management solutions can be implemented. The results of this study will pr ovide critical information that will guide the selection of these management solutions.

• Low Salinity Zone : Much of the work that supports estimates of minimum and maximum freshwater inflow requirements to the Caloosahatchee Estuary is based on the salinity tolerances of freshwater and marine organisms that inhabit the system. The low salinity zone resear ch project examines elements of the estuarine food web. The ultimate goal is to understand the role of freshwater di scharge and production of fish larvae in the estuary. Results can be applied to establishi ng water reservations, to refining flow and salinity envelopes, and to providing guideli nes for delivery of freshwater to the Caloosahatchee Estuary.

• Light Attenuation in San Carlos Bay : This study will determ ine how relative contributions to total light attenuation of chlorophyll- a , colored dissolved organic matter, and turbidity vary with season and freshwater inflow in San Carlos Bay. Information from this study will better define controls on light attenuation in San Carlos Bay and the relationship between the TMDL and its resource goal. Results can be used to determine when, and under what conditions, resource li ght attenuation goals may be met.

9.3.2.1 Research Project Priorities

Each major research project (e.g., Nutrient Budget) can be broken down into several components. Examination of the components of each project shows that several projects may have common components. The major res earch projects and commonalities between components of these proj ects are summarized in Table 9-1 . The source of data for each component is given (existing data, new measurem ents, model etc). Items funded in any given year may be prioritized according to th e number of projects to which they belong.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-12 Table 9-1. Components and Commonalities of Major Research Projects in the Caloosahatchee River Watershed and Estuary
Research Projects Research Component Nutrient Budget DO Dynamics Low Salinity
Zone Light
Attenuation Source

INPUTS
Franklin Lock Loads (S-79) √ √ √ √ Monitoring

Tidal Basin Loads
Surface Flows
Groundwater
Wastewater
Treatment Facilities √ √ √ √ √ √ √ √ √ √ √ √ Model/Measurements
Model/Measurements
New Measurements

Gulf of Mexico √ Model for Flow
Literature
Concentration Atmospheric Deposition √ Literature/ Data Analysis
INTERNAL CYCLING Primary Productivity/
Water Column Respiration √ √ √ √ New Measurements

Organic Matter Decomposition (incl DON) √ √ New Measurements

Benthic Nutrient Flux √ √ New Measurements
DO Time Series √ √ New Measurements
INTERNAL CYCLING San Carlos Bay Times
Series
Color Turbidity Chlorophyll- a TSS PAR (Kd) √ √ √ √ √ New Measurements
New Measurements
New Measurements
New Measurements
New Measurements
OUTPUTS Export to Gulf √ Model
Denitrification √ Benthic Flux Project
BIOMASS

Larval/ Juvenile Fish Zooplankton Benthic microalgae Phytoplankton (species/groups) √ √ √ √ New MeasurementsChapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-13 9.3.3 Modeling Needs and Recommendations

Numerous models have been developed or ar e currently under development for use in the Caloosahatchee River Watershed, as summarized in Table 9-2 . An assessment of existing models and their ability to meet future m odeling needs was conducted and a set of modeling recommendations was developed.

Table 9-2. Existing Caloosahatchee River Watershed Models
Watershed Water Quality and Hydrology Estuary Water Quality and Hydrology Estuarine Ecology

ASFIRS/WATBAL Hydrologic
Model CH3D Hydrodynamic Model Tapegrass Model

Northern Everglades Regional Simulation Model (NERSM) EFDC/WASP Model Habitat Suitability Index

MIKESHE Hydrologic Model

HSPF Model

An integrated modeling framework, combin ing the resource-based Valued Ecosystem Component (VEC) approach and linked watershed and estuarine models, is proposed to meet water management objectives for coastal ecosyst ems protection and restoration (SFWMD, 2008). Specifically, the watershed model estimates th e quantity, timing, and quality of freshwater inflow to the estuary. The estuarine hydrodyna mic, sediment transport, and water quality models, in turn, simulate the estuarine conditions in terms of salinity, wate r quality, and sediment transport. Finally, the ecologi cal models simulate the respons es of estuarine resources and processes to the estuarine conditions.

9.3.3.1 Watershed Hydrology and Water Quality Modeling

Effective management that aims to protect water quality requires a “big picture” view of water
resources at a watershed-scale. Watershed mode ls provide the necessary links for this purpose, particularly when it comes to understanding how non-point sources of pollution interact with point sources, and how these jointly a ffect the downstream water quality.

Watershed hydrology and wa ter quality simulation modeling tools are needed that are capable of (1) simulating the hydrologic inte raction of the Caloosahatchee River Watershed with other components of the Northern Everglades Pr ogram (Lake Okeechobee and St Lucie River watersheds); (2) watershed loading simulation; (3) optimizing operations/s izing of features; and (4) a user-friendly graphic user interface. Additionally, waters hed models are in need of refinement with longer period of calibration and validati on to enhance the simulations of nutrient cycling and DO dynamics. An integration of waters hed models with estuar ine models is also needed.

9.3.3.2 Estuary Hydrodynamic and Water Quality Modeling

Estuary hydrodynamic and water quality simulation modeling tools are need ed that are capable of (1) simulating the impacts induced by the watershed loadi ng, (2) estuary hydrodynamics, and (3) estuary water quality pr ocesses. Estuarine models also n eed refinements in integration with watershed loadings and with longer periods of calibration and validation to enhance the nutrient and DO simulations.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-14 9.3.3.3 Estuarine Ecologic Response Modeling

Future efforts in the estuarine ecologic respon se modeling should simulate the habitats for seagrass, oyster, and fish larvae to represent the entire spectrum of the valued ecosystems in the estuary. A set of ecological performance measures representing different habitats for fish larvae, oysters, and seagrass will be needed to direct operation for both the dry season and the wet season. Eventually, a community-level ecologi cal response model should be developed to predict the ecosystem change with the anticipate d improvement in the habitats. A graphic user interface will also need to be developed to provide explic it linkage between management objectives and predicted improveme nts with restoration actions.

The Habitat Suitability Index (HSI) models shoul d be incorporated into ArcGIS to portray responses spatially and temporally to facilitate po licy decisions. The models need to be further validated with comprehensive monitoring data. A comprehensive assessment is also necessary to evaluate the model for both long-term and short-term applications.

The SAV model should be converted to a comm on platform, such as a FORTRAN program with linkages to Microsoft Excel® or ot her userfriendly interface to incr ease computation efficiency. For broader applications, the SAV model needs to be expanded to include other SAV species, such as Halodule wrightii and Thalassia testudinum . A numeric ecological model will need to be set up for each species and calibrated with field monitoring data. A broad range of tests will also need to be conducted under different sali nity, light and water te mperature conditions. Additionally, current water qua lity linkage applications need to be established.

9.4 Preferred Plan Implementation

The Watershed Construction Project, Watershe d Pollutant Control Program, and Watershed Research and Water Quality Monitoring Progr am collectively comprise the preferred
Caloosahatchee River Watershed Protection Plan. The following sections provide information on various aspects of program implementation including real estate requirements, phasing approach, costs, and plan refinements.

9.4.1 Real Estate Requirements

Specific locations for some preferred Plan features have already been determined, while for other project features, locations have been identified only to the sub-watershed level. Land acquisition needs will be developed over time through the Process Development and Engineering (PD&E) process. During PD&E, conceptual planning will be conducted to further evaluate project siting and real estate acquisition requirem ents. The results of feasibility studies will help define the real estate requirements which will be reflected in future Plan updates.

To the extent possible, opportunities for less th an fee acquisition, such as the Wetland Reserve Program, will be evaluated. It is expected that real estate acquisition fo r individual features will occur over a period of time. State- and SFWMD- owned lands would be preferentially evaluated for siting preferred Plan projec t features. However, many of the existing state- and SFWMDowned acreages have already been targeted for specific features.Chapter 9

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9-15 9.4.2 Operations, Maintenance, Permitting, and Monitoring

The following sections describe the operations, maintenance, permitting, and monitoring needed for the preferred Plan, to the greatest extent possi ble. This section will be revised in future CRWPP updates, as more info rmation becomes available. Appendix F provides greater detail
on these items.

9.4.2.1 Operations & Maintenance

With very few exceptions, the majority of proj ect features included in the preferred Plan are likely to require some level of operation and ma intenance (O&M). Consideration of O&M needs from the outset of planning is important to in sure that the project goals and objectives are achieved in the most efficient, effective, and safe manner. O&M collectively refers to the following five major elements:

• Operations – ongoing activities required to operate the management measure to achieve the project objectives, including water contro l, fuels and materials, monitoring, etc.;

• Maintenance – ongoing activities required to maintain system in an operable condition, including machinery maintenan ce, mowing, inspections, etc.;

• Repair – periodic repair of machinery or other st ructural elements as needed to restore complete operability of the management me asure, including machinery repair, filling scour holes, repairing erosion, etc.;

• Replacement – periodic replacement of project elem ents that have reached or exceeded
their functional life includi ng pump replacement, stop-log riser replacement, etc.; and

• Rehabilitation – major rehabilitation of a project component may be required under the following circumstances:

- when the component has exceeded its func tional life and continued repair and

replacement activities are no longer cost effective;

- when there are substantive changes in c onditions at the facility or associated

components of the water management syst em that preclude meeting the project objectives or result in othe r undesirable impacts; or

- changes in design or safety standards.

9.4.2.2 Permitting

Construction and implementation of the preferred Plan features will require a variety of permits and regulatory approvals. Types of permits and appr ovals needed are likely to vary with feature type and location.

Obtaining all required federal and state permits for implementation and operation of a project feature often requires an intensiv e level of effort. Permitting can result in significant project delays if it is not adequately considered early in project development. However, specific permit requirements and/or issues may not be evident until a substantial leve l of detail has been developed during planning and design.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-16 The types of permits and level of effort required during the permitting process may vary greatly
for similar or identical measures , depending on the physical conditi ons that exist at the project site and surrounding area. During the PD&E proce ss, continuing consideration will be given to the types of permits required and the potential perm itting issues that must be addressed. In this way, the level of effort and time requirements can be factored into the planning and design process to minimize the potential for si gnificant permit-related project delays.

Federal and state permits are likely to be required for the types of project features contained in the preferred Plan, are described in Appendix F . Local permit requirements will vary from site to site and will have to be addressed on a site-specific basis.

9.4.2.3 Monitoring

A comprehensive monitoring and information syst em will be utilized to provide the data necessary to measure the performance and effectiv eness of the preferred Plan in satisfying the restoration goals of the CRWPP. The SFWMD will utilize the current monitoring base and monitoring proposed in the Caloosahatchee Ri ver Watershed RWQMP to provide any projectspecific resources needed to document the effec tiveness of nutrient control efforts in meeting Caloosahatchee River Watershed TMDLs, when es tablished, and to assure compliance with all future permit requirements.

Monitoring is generally required to determine if individual project featur es and the plan, as a whole, are performing as intended. Typically, monitoring requirements for individual projects are established during the permitting and design pro cess. Since the two primary objectives of the CRWPP are storage and water quality improvements, it can be expected that performance of all structural and non-structural projec t features included in the plan will have to be monitored for
flow and P and N load reduction.

Project-level assessments may also be needed that will focus on estimating the performances of both regional projects (i.e. wa ter quality treatment areas, STAs) and local projects (i.e stormwater retrofits) located throughout the Ca loosahatchee River Waters hed. Results of the project-level assessment will provide important water quality reduction information, including
the assessment of the size of the sub-watershed verses the size of the treatment facility and residence time/pollution removal efficiencies. The results also will assist in evaluating specific nutrient reductions from different types of treat ment systems. The overall temporal performance (life cycle) of these facilities over time will also be estimat ed through this effort. This information will ultimately be used in the adap tive management process to improve the overall performance of treatment facilities of various size s (i.e. regional and loca l scale). In addition, safety monitoring will be required for features, such as reservoirs and water quality treatment features. BMPs will also need to be inspected periodically to ensure structural efficacy and that expected performance is achieved.

SFWMD has established an Environmental Monito ring Coordination Team to critically review and evaluate all new monitoring requests to ensure permit compliance, scientific validity, and efficiency. Any future monitoring requirements associated with the CRWPP will be subject to review and approval by the Environmental Mo nitoring Coordination T eam. All current and future water quality data collection, analysis , validation, management, and storage will beChapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-17 conducted in accordance with the FDEP Quality Assurance Rule, 62-160, Florida Administrative Code (F.A.C.), the District Field Sampling Quality Manual and/or the CERP Quality Assurance Systems Requirements Manual.

9.4.3 Phased Implementation

The NEEPP legislation states that the River Watershed Protection Plan s shall be achieved through a phased program of implementation. Ther efore, implementation of the preferred Plan described in this chapter will occur through an iterative, adaptive, and phased implementation process. The preferred Plan will be implemen ted in at least the following three phases.

Phase I

- Projects that will be initiated or completed between 2009 and 2012 ( Table 9-3 ). This phase will primarily focus on continued implem entation of ongoing measures and initiatives. Projects were included in Phase I if current project schedules indicate the pr oject will be initiated or completed by 2012. It is recognized that impl ementation of these projects is contingent upon funding from many different sour ces and that actual implemen tation timeframes may vary. Changes in project schedules will be reflected in annual reports and three-year updates, as appropriate (see Section 9.4.6 for more informati on regarding plan updates). Phase I includes the projects listed below:

• Regional Projects :

- CERP C-43 West Reservoir

- Caloosahatchee Area Lakes Restorati on (Lake Hicpochee) (CRE 04)

- C-43 Water Quality Treatment De monstration Project (CRE 10)

- Spanish Creek/Four Corners Environmen tal Restoration Phase I (CRE 44)

• All Source Control Projects (Note: The Pollutant Control Pr oject features are accounted for in these source control projects.):

- Agricultural BMPs- Owner Implemented, Fund ed Cost Share, and Cost Share Future Funding (CRE-LO 1, 2 and 49)

- Land Application of Residuals (CRE-LO4)

- Additional Agricultural BMPs (CRE-LO 50)

- Urban Turf Fertilizer Ru le (LOER) (CRE-LO 3)

- Florida Yards and Neighborhoods (CRE-LO 5)

- National Pollutant Discharge Eliminati on Sysetm (NPDES) Stormwater Program (CRE-LO 8)

- Environmental Resource Permit Program (CRE-LO 7)

- Proposed Caloosahatchee River Watershe d 40E-61 Regulatory Nutrient Source Control Program (CRE-LO 15)

- Wastewater and Stormwater Master Plans (CRE-LO 63)

- Proposed Unified Statewide St ormwater Rule (CRE-LO 64)

- Comprehensive Planning-Land Development (CRE-LO 68)

- Lake Okeechobee and Estuary Watershed Basin Rule (LOER) (CRE-LO 21)

• Local Stormwater, Wastewater, and Habitat Restoration Projects :

- Alternative Water Storage - Barron Wa ter Control District (CRE-LO 12g)

- Harns Marsh Improvements, Phase I and II (CRE 18)Chapter 9

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9-18 - Billy Creek Filter Marsh, Phase I and II (CRE 45)

- Hendry Extension Canal Widening (CRE 22)

- North Fort Myers Surface Wa ter Restoration (CRE 59)

- Yellow Fever Creek/Gator Slough Transfer Facility (CRE 64)

- Cape Coral Canal Stormwater Recovery by ASR (CRE 77)

• Land Management Projects:

- Florida Ranchlands and Environmen tal Services Program (CRE-LO 87c)

- Farm and Ranchland Part nerships (CRE-LO 91)

- Coastal and Estuarine Land Cons ervation Program (CRE-LO 9)

• Research & Water Quality Monitoring Plan: Monitoring, Research, and Modeling

Table 9-3. Phase 1 (2009-2012) Projects and Implementation Status

Initiated Completed

Powell Creek Algal Turf Scrubber 

### 9

Alternative Water Storage - Barron Water Control
District 

### 9

Caloosahatchee Area Lakes Restoration (Lake Hicpochee) 

### 9

C-43 Water Quality Treatment Demonstration Project (BOMA) 

### 9

Spanish Creek/Four Corners Environmental
Restoration Phase I 

### 9

C-43 West Reservoir 

### 9

Local-Stormwater Projects (e.g., treatment wetlands, conveyance and structural improvements, and stormwater recovery projects) 

### 9 9

Florida Ranchlands and Environmental Services Projects 

### 9 Construction Project

Farm and Ranchland Partnerships 

### 9

Agricultural and Urban BMPs 

### 9

Proposed Revisions to Regulatory Programs (40E61 Regulatory Nutrient Source Control Program, ERP Basin Rule, Statewide Stormwater Rule) 

### 9 Pollutant
Control Program

Comprehensive Planning and Growth Management 

### 9

Research
and Water Quality Monitoring Monitoring, Research, and Modeling 

### 9 9Chapter 9

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9-19 Phase II

- Projects that will be initiated or comp leted between 2013 and 2018. Phase II projects will be identified in the 2012 CRWPP three-ye ar update. The 2012 CRWPP three-year updatewill also provide a status update on Phase I projects. The 2015 and subsequent CRWPP threeyear updates will provide status reports and a ny proposed refinements and revisions regarding
Phase I and Phase II.

Long-Term Implementation Phase

- Projects that will be initia ted subsequent to 2018. The Long-Term Implementation Phase will be fu rther defined during the 2015 and 2018 CRWPP three-year updates.

9.4.3.1 Phase I Implementation Benefits

The following benefits are anticipated from implementation of the Phase I projects:

• Ongoing implementation of BMPs on more th an 430,000 acres of agricultural lands and over 145,000 acres of urban lands;

• Completing regulatory rule revi sions (ERP and Regulatory Nu trient Source Control Rule revisions);

• Completing design and initiatin g construction of approximate ly 9,380 acres of reservoirs and over 6,700 acres of STAs and water quality treatment areas;

• Restoring 2,000 acres of wetlands within the Caloosahatchee River Watershed; and

• Providing approximately 178,600 acre -feet of water storage w ithin the Caloosahatchee
River Watershed.

9.4.4 Cost Estimates and Funding Sources

9.4.4.1 Phase I Implementation Cost Estimate

The preferred Plan captures a wide array of projects and programs; therefore, there will be a variety of implementation and funding strategies ut ilized to move the pr eferred Plan projects forward. Many of these projects are already in cluded in other planning or restoration efforts (e.g., CERP). This plan assumes that those proj ects will continue to be implemented through the existing mechanisms or programs as originally intended.

To provide a source of state funding for the continued restoration of the South Florida ecosystem, the 2007 Florida Legislature expanded the use of the Save Our Everglades Trust Fund to include Northern Everglades restoration and extended the State of Florida’s commitment to Everglades restoration through the year 2020. Save Our Everglades Trust Fund appropriations are determined on an annual basis through the st ate’s budget process. Opportunities for cost sharing, partnering, and grant funding will be utilized to optimize use of resources, as required by section 373.4595(4), F.S.

For purposes of this planning effort, costs have been broken into three categories. It is recognized that there may be other alternative fundi ng strategies for these projects in addition to
those found below.Chapter 9

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9-20 • CERP

- Costs for CERP projects are eligible for a 50 percent cost share with the federal government. The non-federal contribution may be provided by the state, SFWMD, or
local sources.

• Non-CERP

- Costs for non-CERP features will pr imarily be borne by SFWMD and the state, with potential for local cost sharing.

• Local

- Costs for local projects will be covered entirely by the local government or may be cost shared by the local govern ment and state or SFWMD sources.

Cost estimates, potential funding sources, and co st assumptions are provided for each Plan component included in Phase I (w ith the exception of Urban BMPs where the cost reflects full implementation with no phasing). Costs for each progressive pha se of implementation will be developed as more detailed proj ect designs and information from various projects and studies
become available.

• Watershed Construction Project Regional Projects CERP: For CERP projects included in Phase I, capital costs are estimated to be $524- $781 million. State CERP costs are eligible fo r a 50 percent cost-share with the federal government and may also include a local cost share.

Non-CERP: For non-CERP projects (e.g., C-43 Water Quality Treatment and Testing Facility), capital costs are estimated to be $117-$175 million from state, SFWMD and/or
local funds.

Local Projects $15 million from state funds. Note : Based on $5 million per year from 2010 to 2012 and does not reflect matching funds fr om SFWMD or local sources.

• Pollutant Control Program Agricultural BMPs: $3.3-$4.0 million from st ate, SFWMD and/or local funds. Note : Assumes that 100% of owner-implemented a nd 35% of cost-share agricultural BMPs within the watershed can be implemented dur ing Phase I, the state contributes 50% for capital costs, and that remaining costs ar e paid by landowners and federal grants.

Urban BMPs: $663-$809 million from state and local funds. Note : Reflects total capital costs for full implementation of urban BMPs with no phasing and no cost share assumptions. Additional details regarding f unding scenarios and schedules for urban bmp implementation will be established dur ing the Basin Management Action Plan development process and will be incorporated into future Protection Plan updates.

• Research and Water Quality Monitoring Program $5.2 million in state and local funds. Note : This estimate includes costs for research and additional monitoring. Ongoing monitoring cost s are not included, as those programs are already in existence and funded through other mechanisms.Chapter 9

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9-21 Cost estimates are based on the following assumptions:

• Costs do not include dollars that ha ve already been expended to date;

• Costs include the full cost to build a project completely, even if c onstruction period goes beyond Phase I;

• High cost estimates are based upon 10 percen t annual real estate inflation and nine percent annual constr uction inflation; and

• Low cost estimates are based upon 6 percent annual r eal estate inflation and two percent
annual construction inflation.

9.4.4.2 Future Implementation Cost Estimate

Costs for each progressive stage of implementati on will be developed as more detailed project designs and information from various projects and studies are available. It is anticipated that
modifications and refinements in the methods used to reduce TP and TN loading to the Caloosahatchee Estuary will occur in the future, as a result of model and technology refinements
described in Section 9.4.6.2 and Section 9.4.6.3, re spectively. Factoring th is type of information in will provide additional clar ity regarding the scope and engin eering and design specifics of projects that will be included in subsequent stages and reduce the uncertainty associated with
cost estimates. Cost estimates for Phase II will be provided in th e 2012 CRWPP three-year update.

9.4.4.3 Funding Sources and Cos t-Sharing Opportunities

The majority of funding for the implementation of this preferred Plan will be from state, SFWMD, federal, and local sour ces. The 2007 NEEPP legislati on provides a dedicated state funding source for the Northern Ev erglades restoration by expa nding the use of the Save Our Everglades Trust Fund to include the Lake Ok eechobee Watershed Protection Plan, the CRWPP,
and the St. Lucie River Waters hed Protection Plan. The legi slation specifically states “There is created within the Department of Environm ental Protection the Save Our Everglades Trust Fund. Funds in the trust fund shal l be expended to implement the comprehensive plan defined in s. 373.470(2)(a), the Lake Okeechobee Watershed Protection Plan defined in s. 373.4595(2), the
Caloosahatchee River Watershed Protection Plan defined in s. 373.4595(2), and the St. Lucie River Watershed Protection Plan defined in s. 373.4595(2)...” (Section 373.472, F.S.)(2007).

The legislation also extends the state's comm itment to provide funding for CERP and the Northern Everglades through the year 2020. Section 470(6)(a) F.S (2007) states “Except for funds appropriated for debt service, the depar tment shall distribute funds in the Save Our Everglades Trust Fund to the district in a ccordance with a legisl ative appropriation and s. 373.026(8)(b) and (c). Distribution of funds to the district from the Save Our Everglades Trust Fund shall be equally matched by the cumulative contributions from the district by fiscal year 2019-2020 by providing funding or cred its toward project components.” This is intended to be a recurring source of funding from the state, but must be appropriated by the legislature annually. Funding from the state is to be matched by SFWMD. Many of the local features will have cost sharing with landowners and loca l governments, as well as stat e and federal grant programs.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-22 The rate of implementation for non-CERP project s will be dependent up on the level of funding from state, SFWMD, local, and select federal sources. The ra te of implementation for CERP projects will be dependent upon fede ral, state, and SFWMD sources.

It is recognized that multiple sources of f unding beyond the recurring an nual state and SFWMD appropriations will be require d to complete the implementation of the preferred Plan ( Appendix
G ). These sources may include funding from federal government agencies (United States Army Corps of Engineers, United States Department of the Interior, USDA, etc.) local governments, tribal communities, a nd private landowners.

9.4.5 Implementation Challenges

An array of public agencies works to protect and manage the Caloosah atchee River Watershed and Estuary. Most of these agencies have multiple roles in the management of water resources. With this overlapping framework for wate r resource management, both challenges and opportunities are inevitable. For instance, though an agency may play a role in managing the resource, the level of funding dedi cated to the different responsib ilities may vary significantly and will change as the agencies’ priorities change. This plan will be updated regularly in order to account for these types of changes throughout the implementation process. Because water resources do not follow jurisdictional lines a nd are affected by all levels of government, identifying and pursuing effective management a pproaches that reach across these jurisdictional lines is critical to the successful implementa tion of the CRWPP. Linking water resource management and land-use programs, as well as seeking cooperative management and funding opportunities is a necessary part of plan implem entation. Continued participation by public and private organizations will assist in maintaini ng the momentum for protecting and managing the
water resources within the Caloosahatchee Watershed.

9.4.6 Plan Refinement and Revisions

The preferred Plan provides a framework and road map for progressive water quality and quantity improvements to benefit the Lake Okeechobee and downstream estuaries.

Throughout implementation, it is fully expected that hydrologic and water quality conditions in the Caloosahatchee River Watershed will continue to change as land uses in the watershed are modified, and as restoration projects become operational. Performance will be periodically assessed and revisions made, as necessary. In addition, NEEPP requires annual progress reports and protection plan updates every three years.

Portions of this CRWPP have already been implemented or are in the process of being implemented. More detailed planning and de sign of other features will begin in 2009 and continue throughout the CRWPP implementation stages. During implementation, the hydrologic and water quality conditions in the Calooshatachee River Watershe d will continue to change as land use changes and individual projects affecti ng the quality and quantity of water become operational. Therefore, it is important to have a procedure in place to ensure that:

• A process is established to promote more thorough planning from initial design through project implementation;Chapter 9

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9-23 • Plan performance is adequately an d appropriately monitored over time;

• The CRWPP is revised at periodic interval s, as necessary, based on evaluation of monitoring data; and

• Plan progress is reported to the legislatur e, regulatory agencies, and the public on a regular basis.

Similar to other state initiativ es (e.g. Everglades Protection Area Tributary Basins Long-Term Plan for Achieving Water Quality Goals), this pr ocedure is expected to be borne out through
PD&E. The recommendations for PD&E are descri bed in this section. A description of the strategy for plan refinement, revisi on, and reporting is also provided.

9.4.6.1 Process Development and Engineering

The primary objective of the PD&E is to provide a roadmap for further refinement of the design of individual plan components. The PD&E w ill also identify additional measures that, if implemented, will increase certainty that the overall plan objectives for improving water quality and quantity are met. The PD&E procedure recognizes the following:

• Achieving improvements in the quality, quant ity, timing, and distribution of water and achievement of water quality standards will involve an adaptive management approach, whereby the best available information is us ed to develop and expeditiously implement incremental improvement measures in a cost-effective manner.

• Continued engineering evaluations will be nece ssary to increase certainty in the overall operation and performance of integrated hydrology and water quality improvement strategies.

• Significant technical and economic benefits can be realized by integrating the preferred Plan water quality and water quantity manageme nt measures with CERP projects, even to the extent that existing schedules should be re -evaluated in some basins and synchronized with CERP implementation schedules.

• The Nutrient and DO TMDL for the Tidal Calooshatachee River and tributaries are currently under development and are antici pated to be completed in December 2008. Depending upon of the outcome of the developm ent of the TMDLs, the preferred Plan may need to be modified and/or additional proj ects may need to be added to the preferred
Plan.

Key elements of the PD&E procedure include model refinement, technology refinement, subwatershed conceptual planning, adaptive management (resulting from research and water quality monitoring), and plan updates an d revisions. These elements are further described in the following sections.

9.4.6.1.1 Model Refinements

An integrated modeling approach is reco mmended to provide the technical support for implementation and adaptive management of the CRWPP. In addition, several modeling needs
have been identified to refine or update the existing models. These continuous improvements are further described in the RWQMP ( Appendix E ).Chapter 9

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9-24 9.4.6.1.2 Technology Refinements

Existing technology refinement effort s will play an impor tant role in optimiz ing and refining the implementation of many features that make up the preferred Plan. These features currently include BMP research and refinement, STA integr ation and refinement, and further research on
innovative nutrient control tec hniques, chemical treatment, and hybrid wetland treatment technologies.

BMP Research and Refinement: Several uncertainties exist in estimating BMP performance. Some uncertainties associated with the performance of BMPs include the impacts of different soils and hydrologic conditio ns, the quantity of water that can be held on a parcel without impacting an ag ricultural operation, and legacy nutrients currently within the Caloosahatchee River Watershed. The BMP perf ormance estimates utilized in the CRWPP were based on best professional judgment and take into account the uncertainties described above and information available from literature, as well as actual performance data observed
within the Caloosahatchee River Watershed to da te. These estimates will continue to be refined over time, as ongoing and future resear ch provides additional information through the technology and model refinement efforts.

Water Quality Project Inte gration and Refinement: The preferred Plan establishes a technical framework through PD&E for the refinement and integration of water quality projects for the purpose of meeting water quali ty goals for the watershed and estuary. The goal of water quality project refinement and in tegration is to apply adaptive management analyses that will assist in determining how to optimize nutrient removal in individual projects and how to integrate multiple wa ter quality projects throughout the watershed.

Innovative Nutrient Control Technologies: Evaluation and testing of technologies, such as chemical treatment and hybrid wetland treatment technologies that have the potential to
remove nutrients in a cost-e ffective manner to meet any adopted TMDLs in the St. Lucie River Watershed, will be conducted. The results of these and other testing and evaluations in the future will play a role in refining and optimizing the CRWPP.

Hybrid Wetland Treatment Technology: Hybrid Wetland and Treatment Technology combines the strengths of the two top-ranked nutrient removal technologies, namely treatment wetlands and chemical injection system . This synergy results in nutrient removal efficiencies beyond those attain able by either separate t echnology, with lower capital and operating costs. Optimization of system pe rformance is achieved by adjusting hydraulic retention time (area of facility) and/or chemi cal dosing rates. Hybrid Wetland and Treatment Technology has been previously demonstrated to reduce P concentrations from over 1000 ppb to less than 100 ppb. Preliminary data fr om the existing Hybrid Wetland and Treatment Technology pilot facilities in Lake Okeechob ee and St. Lucie River watersheds show P concentration reductions in the range of 84 to 94 percent. Based on the results of the ongoing pilot projects, additional Hybrid Wetland and Treatment Technology projects may be located
within the St. Lucie watershed.

Nitrogen Reduction Technology: The treatment efficiency of most of the included water quality features is well docum ented with regards to TP reduc tions. Unfortunately, there isChapter 9

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9-25 not as much existing information regarding ho w well these facilities address reductions of TN in the South Florida region. Additional inves tigations to determine the most efficient and effective methods of reducing TN loads and concen trations will be included in future efforts.

9.4.6.1.3 Sub-watershed Conceptual Planning

The preferred Plan has provided a general framework and road map to follow that will result in progressive improvements in nutrient loading to the Caloosahatchee Estuary and additional storage that will reduce undesirable Caloosahatch ee River Watershed discharges. However, due to the general nature of many of the projects identified in this planning process, a significant amount of detailed planning, design and engin eering will be necessary prior to project implementation.

In addition, the results of other feasibility efforts will be used to help m eet the preferred Plan’s objectives in as cost-effective a manner as possibl e. Studies and pilot projects that test and evaluate various water quality treatment technologi es will be used to refine and optimize nutrient
removal.

Level 4 and 5 features of the pref erred Plan are those that have th e least detail and have not been sited at this time. Therefore, for these features, the initial stag es of more detailed planning and design, prior to more detailed engineering, will be an evaluation of lands that are currently in SFWMD ownership and how best to maximize th eir utilization for water quality and surface storage and minimize the need for additional lands. This conceptual planning may be performed on a site-specific basis; however, most initia l planning will be conducted on a broader subwatershed scale. In compliance with the NEEPP requirements, the siting analyses will consider potential impacts to wetlands and threatened and endangered species. After siting of features is completed, more detailed design and engineering will follow.

9.4.6.1.4 Adaptive Management

In order to improve environmental conditions in both estuaries, protection plans will call for the construction of facilities designed to help meet any adopted TMDLs and flow/salinity targets by attenuating and storing storm water runoff, and reducing nutrient loads. Operation of these
facilities will be vital to their success. Mon itoring and short-term studies will be required to adaptively manage these facilities to meet environmental objectives.

Research conducted within the context of an environmental protection program supports and informs adaptive management. Adaptive management is the iterative and deliberative process of applying the principles of scient ific investigation to the design and implementation of a program to better understand the ecosystem and predict its response to implementation and to reduce key uncertainties. The basis of adaptive management is the use of feedback loops that iteratively
feed new information into the decision-mak ing process for planning, implementation, and assessment of project components. The three-y ear assessment, specified in the legislation, provides this feedback loop and ensures the inco rporation of adaptive management in the River
Watershed Protection Plans.

Research for adaptive management uses a combin ation of models (concep tual to numeric) and observational and experimental studies to re duce uncertainty in the proposed TMDL andChapter 9

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9-26 salinity/flow targets, improve the operations of water storage and water quality projects and increase predictive capability. The role of mo deling is to provide a mechanism for synthesis, hypothesis specification, and preliminary tes ting, and to enhance predictive capability.

9.4.6.1.5 Plan Updates and Revisions

The coordinating agencies will prepare CRWPP updates and revisions, which may be necessary based on new information from PD&E, updated wa ter quality and hydrologic data, and adaptive management. In addition, other agencies and th e public will have the opportunity to provide input to the coordinating agencies in devel oping proposed changes through numerous public forums. A process for updati ng and revising the CRWPP throughout the various implementation stages is described below.

9.4.6.1.5.1 Types of Updates and Revisions

Revisions to the preferred Plan will be classifi ed as minor or major, based on the following
criteria:

• Magnitude and nature of the proposed re visions (i.e., scope, schedule, budget);

• Potential for the proposed revision to have environmental impacts that are significantly different from those previously considered by the coordinating agencies for the project;

• Potential for the revision to impact the in tent and purpose of the preferred Plan; and

• If the revision requires SFWMD Governing Board approval.

The classification of the revision will not neces sarily determine the nature of any accompanying permit requirements that may be necessary.

9.4.6.1.5.2 Process for Updates, Revisoins, and Reporting

The following process is proposed for updating the CRWPP and reporting.

• Monthly/Bi-monthly Coordinating Agency Meetings – This forum will be used to discuss progress of implementation, review new information and data, present proposals for revisions (minor and major) along with supporting documentation, and to seek review
and comments.

• Semi-annual Coordinating Agency Review – New information compiled as a result of the Interagency Coordinating Meetings and other agency and public input will be reviewed by SFWMD, FDEP, and FDACS.

• Annual Report in the South Flor ida Environmental Report (SFER) – SFWMD will submit the required annual report in the SFER (a.k.a. Consolidated Water Management District Annual Report) to FDEP, the Govern or, the President of the Senate, and the Speaker of the House of Representatives. Th is annual report will summarize the status of research and monitoring, project implement ation, and recommended revisions to the CRWPP. In addition, major updates and revi sions to the plan wi ll be identified and described in the annual report. The discussi on will include a description of the need for the revision and its impacts on the CRWPP’ s scope, schedule, budget, and objectives.Chapter 9

Caloosahatchee River Watershed Protection Plan January 2009
9-27 Public comments received during the coordinati on of the proposed plan revision will also be noted in the annual report.

• Annual Work Plan – The Annual Work Plan will be su bmitted for each fiscal year to FDEP, identifying the projects and funding n ecessary to implement those projects.

• CRWPP Update –Every three years SFWMD, in cooperation with the coordinating agencies, will formally update, revise, and s ubmit the CRWPP to the State Legislature.

9.4.6.2 Public Involvement

Public involvement will be sought regarding proposed updates and revisions to the CWRPP through discussion with the groups listed below.

• Northern Everglades Interagency Coordinating Meetings – This forum will be used to discuss progress of implementation, re view new information and data, present proposals for revisions (minor and major) along with supporting documentation, and to seek review and comments from the coordinating agencies, stakeholders, and the general public.

• Water Resources Advisory Commission (W RAC) and Lake Okeechobee Committee Meetings – Regular updates will be provide d to WRAC and the Lake Okeechobee Committee, which advises SFWMD Governi ng Board on a variety of environmental restoration and water resource management is sues. WRAC also serves as a forum for improving public participation and decision- making on water resource issues. These meetings will be used to discuss progre ss of implementation and seek input from stakeholders, as well as the general public.

• SFWMD Governing Board Meetings – Updates on progress of implementation and proposals for major revisions will be discusse d as appropriate. This forum will provide an opportunity for input from stakeholders, as well as the general public.

• Other public meetings, as necessary.

9.4.7 Force Majeure

Extraordinary events or circumstances beyond the control of the coordinating agencies may prevent or delay implementation of the preferred Plan. Such events may include, but are not limited to, Acts of Nature (including fire, flood, drought, hurricane, or other natural disaster), as well as unavoidable legal barriers or restraints, including litig ation of permits for individual CRWPP projects.

### CHAPTER 10

LITERATURE CITEDChapter 10

Caloosahatchee River Watershed Protection Plan January 2009
10-1 10.0 LITERATURE CITED

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Chamberlain, R.H. (2005). Caloosahatchee Estuary Hydrol ogic Evaluation Performance Measures (C-43 Basin Storage Reservoir Project) (C-43 BSR Study Team Adopted Draft). West Palm Beach, FL: South Flor ida Water Management District.

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Chamberlain, R.H., & Doering P.H. (1998a). Freshwater inflow to the Caloosahatchee estuary and the resource-based method for evaluation (Technical Report No. 98-02). Punta Gorda,
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Chamberlain, R.H., & Doering P.H. (1998b). Preliminary estimate of optimum freshwater inflow to the Caloosahatchee estuary: A resource-based approach (Technical Report No. 98-02). Punta, Gorda, FL: Charlotte Harbor Nationa l Estuary Program. Retrieved September 18, 2008, from http://www.chnep.org/ info/Symposium97/9802-15.pdf

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