# Patent

## Title
Aminopyrimidines useful as inhibitors of protein kinases

## Abstract

The present invention relates to compounds useful as inhibitors of protein kinases. The invention also provides pharmaceutically acceptable compositions comprising those compounds and methods of using the compounds and compositions in the treatment of various disease, conditions, and disorders. The invention also provides processes for preparing compounds of the invention.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a continuation application of International Patent Application No. PCT/US2008/056433, filed on Mar. 10, 2008, which in turn claims the benefit under 35 U.S.C. 119, of U.S. Provisional Patent Application Nos. 60/905,929, filed on Mar. 9, 2007 and 60/953,024 filed on Jul. 31, 2007.


TECHNICAL FIELD OF THE INVENTION
The present invention relates to compounds useful as inhibitors of protein kinases. The invention also provides pharmaceutically acceptable compositions comprising the compounds of the invention and methods of using the compositions in the treatment of various disorders. The invention also provides processes for preparing the compounds of the invention.
BACKGROUND OF THE INVENTION
Glycogen synthase kinase-3 (GSK-3) is a serine/threonine protein kinase comprised of α and β isoforms that are each encoded by distinct genes [Coghlan et al., Chemistry & Biology 2000, 7, 793-803; and Kim and Kimmel, Curr. Opinion Genetics Dev., 2000 10, 508-514]. Protein kinases, particularly GSK-3, have been implicated in various diseases, disorders, and conditions including Diabetes, Alzheimer's, Huntington's, Amyotrophic Lateral Sclerosis, Parkinson's, Bipolar disorder, Schizophrenia, Cerebral stroke, and Cardiac Hypertrophy. [PCT Application Nos.: WO 99/65897 and WO 00/38675; Haq et al., J. Cell Biol. 2000, 151, 117-130; Hirotani et al, Circulation Research 101, 2007, pp. 1164-1174].
Inhibiting GSK-3 is the desired approach for treating these diseases, disorders, and conditions. In cardiac hypertrophy, active GSK-3 may be important for inhibiting hypertrophy. However, blocking GSK-3 appears to be important for protecting against apoptosis in hypertrophied cardiac myoctyes. [Haq et al., J. Cell Biol. 2000, 151, 117-130; Hirotani et al, Circulation Research 101, 2007, pp. 1164-1174].
GSK-3 regulates multiple downstream effectors associated with a variety of signaling pathways. These proteins include glycogen synthase, which is the rate limiting enzyme necessary for glycogen synthesis, the microtubule associated protein Tau, the gene transcription factor β-catenin, the translation initiation factor e1F2B, as well as ATP citrate lyase, axin, heat shock factor-1, c-Jun, c-myc, c-myb, CREB, and CEPBα. These diverse protein targets implicate GSK-3 in many aspects of cellular metabolism, proliferation, differentiation, and development.
In a GSK-3 mediated pathway that is relevant for the treatment of type II diabetes, insulin-induced signaling leads to cellular glucose uptake and glycogen synthesis. Along this pathway, GSK-3 is a negative regulator of the insulin-induced signal. Normally, the presence of insulin causes inhibition of GSK-3 mediated phosphorylation and deactivation of glycogen synthase. The inhibition of GSK-3 leads to increased glycogen synthesis and glucose uptake [Klein et al., PNAS 1996, 93, 8455-8459; Cross et al., Biochem. J. 1994, 303, 21-26); Cohen, Biochem. Soc. Trans. 1993, 21, 555-567; and Massillon et al., Biochem J. 1994, 299, 123-128]. However, in a diabetic patient, where the insulin response is impaired, glycogen synthesis and glucose uptake fail to increase despite the presence of relatively high blood levels of insulin. This leads to abnormally high blood levels of glucose with acute and long-term effects that may ultimately result in cardiovascular disease, renal failure and blindness. In such patients, the normal insulin-induced inhibition of GSK-3 fails to occur. It has also been reported that in patients with type II diabetes, GSK-3 is overexpressed [see, PCT Application: WO 00/38675]. Therapeutic inhibitors of GSK-3 are therefore potentially useful for treating diabetic patients suffering from an impaired response to insulin.
GSK-3 activity is associated with Alzheimer's disease. The hallmarks of this disease are the extracellular plaques formed by aggregated β-amyloid peptides and the formation of intracellular neurofibrillary tangles via the tau protein.
It has been shown that GSK-3 inhibition reduces amyloid-β peptides in an animal model of Alzheimer's disease. See pages 435, 438. Phiel et. al., Nature 423, 435-439 (2003). Mice over-expressing amyloid precursor protein (APP) treated with lithium (a GSK-3α inhibitor) over a three-week period showed over a 50% decrease in amyloid-β peptide tissue levels.
The neurofibrillary tangles contain hyperphosphorylated Tau protein, in which Tau is phosphorylated on abnormal sites. GSK-3 is known to phosphorylate these abnormal sites in cell and animal models. Conditional transgenic mice that over-express GSK-3 develop aspects of AD including tau hyperphosphorylation, neuronal apoptosis and spatial learning deficit. Turning off GSK-3 in these mice restores normal behavior, reduces Tau hyperphosphorylation and neuronal apoptosis. (Engel T et al., J Neuro Sci, 2006, 26, 5083-5090 and Lucas et al, EMBO J, 2001, 20, 27-39) Inhibitors of GSK-3 have also been shown to prevent hyperphosphorylation of Tau in cells [Lovestone et al., Current Biology 1994, 4, 1077-86; and Brownlees et al., Neuroreport 1997, 8, 3251-55].
GSK-3 as a target for psychosis and mood disorders, such as schizophrenia and bipolar disease, respectively, have been reported in the literature. AKT haplotype deficiency was identified in a subset of schizophrenic patients which correlated with increased GSK-3 activity. A single allele knockout of GSK-3β resulted in attenuated hyperactivity in response to amphetamine in a behavior model of mania.
Several antipsychotic drugs and mood stabilizers used to treat both schizophrenic and bipolar patients have been shown to inhibit GSK-3 (Emamian et al, Nat Genet, 2004, 36, 131-137; Obrien et al, J Neurosci, 2004, 24, 6791-6798; Beaulieu et al, PNAS, 2004, 101, 5099-5104; Li et al Int J Neuropsychopharmacol, 2006, pp 1-13; Gould T D, Expert Opin Ther Targets, 2006, 10, 377-392). Furthermore, a recent patent, US 2004/0039007 describes GSK-3 inhibitors that show anti-schizophrenic and anxiolytic effects in relevant mouse behavior models.
GSK-3 activity is associated with stroke. Wang et al. showed that IGF-1 (insulin growth factor-1), a known GSK-3 inhibitor, reduced infarct size in rat brains after transient middle cerebral artery occlusion (MCAO), a model for stroke in rats. [Wang et al., Brain Res 2000, 859, 381-5; Sasaki et al., Neurol Res 2001, 23, 588-92; Hashimoto et al., J. Biol. Chem. 2002, 277, 32985-32991]. US 2004/0039007 describes the effect of GSK-3 inhibitors in MCAO, a stroke model in rats. These GSK-3 inhibitors significantly reduced striatal ischemic damage and reduced edema formation in rats. Additionally, the rats “demonstrated marked improvement in neurological function over the time course of the experiment.”
For all the above reasons, there is a great need to develop compounds useful as inhibitors of protein kinases. In particular, it would be desirable to develop compounds that are useful as inhibitors of GSK-3, particularly given the inadequate treatments currently available for the majority of the disorders implicated in their activation.
SUMMARY OF THE INVENTION
This invention provides compounds and pharmaceutically acceptable compositions thereof that are useful as inhibitors of GSK-3 protein kinases.
These compounds are represented by formula I:




or a pharmaceutically acceptable salt thereof, wherein the variables are as defined herein.

These compounds have surprising selectivity in blocking the tyrosine autophosphorylation form of the GSK-3 enzyme over the serine/threonine kinase form. These compounds are also surprisingly effective in increasing axonal and dendritic branching in neuronal cells, which is useful in the treatment of degenerative conditions such as stroke, Alzheimer's Disease, Parkinson's Disease, Huntington's Disease, Amyotrophic Lateral Sclerosis (ALS) Multiple Sclerosis (MS), Spinal Cord Injury, Traumatic Brain Injury, Charcot-Marie-Tooth, Leukocytopenia, Diabetes, Diabetic Neuropathy, and Osteoporosis.
These compounds are also effective as chemomodulators of repair, regeneration, and cellular differentiation.
The present invention also provides processes for preparing these compounds, compositions, pharmaceutical compositions, and methods of using such compounds and compositions for inhibiting protein kinases. These compounds are particularly useful as GSK-3 inhibitors.
These compounds and pharmaceutically acceptable compositions thereof are also useful for treating or preventing a variety of diseases, disorders or conditions, including, but not limited to, an autoimmune, inflammatory, proliferative, or hyperproliferative disease, a neurodegenerative disease, or an immunologically-mediated disease.
The compounds provided by this invention are useful for inhibiting kinases in vitro, in vivo, and ex vivo. These compounds also useful for the study of kinases in biological and pathological phenomena; the study of intracellular signal transduction pathways mediated by such kinases; and the comparative evaluation of new kinase inhibitors.


DETAILED DESCRIPTION OF THE INVENTION
This invention provides compounds of Formula I:




or a pharmaceutically acceptable salt thereof, wherein:

RX is C1-3 alkyl and

RY is C1-3 alkyl.

In some embodiments, RX is methyl or ethyl. In some embodiments, RX is methyl. In some embodiment RY is methyl. In some embodiments, RX and RY are both methyl. In some embodiments, RX is ethyl and RY is methyl.
One embodiment provides the compounds of Table 1 shown below.







TABLE 1













 















Compounds of this invention include those described generally above, and are further illustrated by the classes, subclasses, and species disclosed herein. As used herein, the following definitions shall apply unless otherwise indicated. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75th Ed. Additionally, general principles of organic chemistry are described in “Organic Chemistry”, Thomas Sorrell, University Science Books, Sausalito: 1999, and “March's Advanced Organic Chemistry”, 5th Ed., Ed.: Smith, M. B. and March, J., John Wiley & Sons, New York: 2001, the entire contents of which are hereby incorporated by reference.
As described herein, a specified number range of atoms includes any integer therein. For example, a group having from 1-4 atoms could have 1, 2, 3, or 4 atoms.
As described herein, compounds of the invention may optionally be substituted with one or more substituents, such as are illustrated generally above, or as exemplified by particular classes, subclasses, and species of the invention. It will be appreciated that the phrase “optionally substituted” is used interchangeably with the phrase “substituted or unsubstituted.” In general, the term “substituted”, whether preceded by the term “optionally” or not, refers to the replacement of hydrogen radicals in a given structure with the radical of a specified substituent. Unless otherwise indicated, an optionally substituted group may have a substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds.
The term “stable”, as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, recovery, purification, and use for one or more of the purposes disclosed herein. In some embodiments, a stable compound or chemically feasible compound is one that is not substantially altered when kept at a temperature of 40° C. or less, in the absence of moisture or other chemically reactive conditions, for at least a week.
The term “aliphatic” or “aliphatic group”, as used herein, means a straight-chain (i.e., unbranched) branched or unbranched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-20 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-10 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-8 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-6 aliphatic carbon atoms, and in yet other embodiments aliphatic groups contain 1-4 aliphatic carbon atoms. Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, or alkynyl groups. Specific examples include, but are not limited to, methyl, ethyl, isopropyl, n-propyl, sec-butyl, vinyl, n-butenyl, ethynyl, and tert-butyl.
The term “alkyl” as used herein, means a straight-chain (i.e., unbranched), branched or unbranched, substituted or unsubstituted, hydrocarbon chain that is completely saturated and has a single point of attachment to the rest of the molecule. Unless otherwise specified, alkyl groups contain 1-6 alkyl carbon atoms. In some embodiments, alkyl groups contain 1-4 alkyl carbon atoms. In other embodiments, alkyl groups contain 1-3 alkyl carbon atoms. Examples include, but are not limited to, methyl, ethyl, isopropyl, n-propyl, sec-butyl, n-butyl, and n-pentyl.
The term “cycloaliphatic” (or “carbocycle” or “carbocyclyl” or “cycloalkyl”) refers to a monocyclic C3-C8 hydrocarbon or bicyclic C8-C12 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule wherein any individual ring in said bicyclic ring system has 3-7 members. Suitable cycloaliphatic groups include, but are not limited to, cycloalkyl and cycloalkenyl groups. Specific examples include, but are not limited to, cyclohexyl, cyclopropenyl, and cyclobutyl.
The term “heterocycle”, “heterocyclyl”, or “heterocyclic” as used herein means non-aromatic, monocyclic, bicyclic, or tricyclic ring systems in which one or more ring members are an independently selected heteroatom. In some embodiments, the “heterocycle”, “heterocyclyl”, or “heterocyclic” group has three to fourteen ring members in which one or more ring members is a heteroatom independently selected from oxygen, sulfur, nitrogen, or phosphorus, and each ring in the system contains 3 to 7 ring members.
Suitable heterocycles include, but are not limited to, 3-1H-benzimidazol-2-one, 3-(1-alkyl)-benzimidazol-2-one, 2-tetrahydrofuranyl, 3-tetrahydrofuranyl, 2-tetrahydrothiophenyl, 3-tetrahydrothiophenyl, 2-morpholino, 3-morpholino, 4-morpholino, 2-thiomorpholino, 3-thiomorpholino, 4-thiomorpholino, 1-pyrrolidinyl, 2-pyrrolidinyl, 3-pyrrolidinyl, 1-tetrahydropiperazinyl, 2-tetrahydropiperazinyl, 3-tetrahydropiperazinyl, 1-piperidinyl, 2-piperidinyl, 3-piperidinyl, 1-pyrazolinyl, 3-pyrazolinyl, 4-pyrazolinyl, 5-pyrazolinyl, 1-piperidinyl, 2-piperidinyl, 3-piperidinyl, 4-piperidinyl, 2-thiazolidinyl, 3-thiazolidinyl, 4-thiazolidinyl, 1-imidazolidinyl, 2-imidazolidinyl, 4-imidazolidinyl, 5-imidazolidinyl, indolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, benzothiolane, benzodithiane, and 1,3-dihydro-imidazol-2-one.
Cyclic groups, (e.g. cycloaliphatic and heterocycles), can be linearly fused, bridged, or spirocyclic.
The term “heteroatom” means one or more of oxygen, sulfur, nitrogen, or phosphorus, (including, any oxidized form of nitrogen, sulfur, or phosphorus; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2H-pyrrolyl), NH (as in pyrrolidinyl) or NR+ (as in N-substituted pyrrolidinyl)).
The term “unsaturated”, as used herein, means that a moiety has one or more units of unsaturation.
The term “alkoxy”, or “thioalkyl”, as used herein, refers to an alkyl group, as previously defined, attached to the principal carbon chain through an oxygen (“alkoxy”) or sulfur (“thioalkyl”) atom.
The terms “haloalkyl”, “haloalkenyl”, “haloaliphatic”, and “haloalkoxy” mean alkyl, alkenyl or alkoxy, as the case may be, substituted with one or more halogen atoms. The terms “halogen”, “halo”, and “hal” mean F, Cl, Br, or I.
The term “aryl” used alone or as part of a larger moiety as in “aralkyl”, “aralkoxy”, or “aryloxyalkyl”, refers to monocyclic, bicyclic, and tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members. The term “aryl” may be used interchangeably with the term “aryl ring”. The term “aryl” also refers to heteroaryl ring systems as defined hereinbelow.
The term “heteroaryl”, used alone or as part of a larger moiety as in “heteroaralkyl” or “heteroarylalkoxy”, refers to monocyclic, bicyclic, or tricyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic, at least one ring in the system contains one or more heteroatoms, and wherein each ring in the system contains 3 to 7 ring members. The term “heteroaryl” may be used interchangeably with the term “heteroaryl ring” or the term “heteroaromatic”. Suitable heteroaryl rings include, but are not limited to, 2-furanyl, 3-furanyl, N-imidazolyl, 2-imidazolyl, 4-imidazolyl, 5-imidazolyl, benzimidazolyl, 3-isoxazolyl, 4-isoxazolyl, 5-isoxazolyl, 2-oxazolyl, 4-oxazolyl, 5-oxazolyl, N-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, 2-pyridyl, 3-pyridyl, 4-pyridyl, 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl, pyridazinyl (e.g., 3-pyridazinyl), 2-thiazolyl, 4-thiazolyl, 5-thiazolyl, tetrazolyl (e.g., 5-tetrazolyl), triazolyl (e.g., 2-triazolyl and 5-triazolyl), 2-thienyl, 3-thienyl, benzofuryl, benzothiophenyl, indolyl (e.g., 2-indolyl), pyrazolyl (e.g., 2-pyrazolyl), isothiazolyl, 1,2,3-oxadiazolyl, 1,2,5-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,3-triazolyl, 1,2,3-thiadiazolyl, 1,3,4-thiadiazolyl, 1,2,5-thiadiazolyl, purinyl, pyrazinyl, 1,3,5-triazinyl, quinolinyl (e.g., 2-quinolinyl, 3-quinolinyl, 4-quinolinyl), and isoquinolinyl (e.g., 1-isoquinolinyl, 3-isoquinolinyl, or 4-isoquinolinyl).
The term “protecting group” and “protective group” as used herein, are interchangeable and refer to an agent used to temporarily block one or more desired reactive sites in a multifunctional compound. In certain embodiments, a protecting group has one or more, or preferably all, of the following characteristics: a) is added selectively to a functional group in good yield to give a protected substrate that is b) stable to reactions occurring at one or more of the other reactive sites; and c) is selectively removable in good yield by reagents that do not attack the regenerated, deprotected functional group. Exemplary protecting groups are detailed in Greene, T. W., Wuts, P. G in “Protective Groups in Organic Synthesis”, Third Edition, John Wiley & Sons, New York: 1999 (and other editions of the book), the entire contents of which are hereby incorporated by reference. The term “nitrogen protecting group”, as used herein, refers to an agents used to temporarily block one or more desired nitrogen reactive sites in a multifunctional compound. Preferred nitrogen protecting groups also possess the characteristics exemplified above, and certain exemplary nitrogen protecting groups are also detailed in Chapter 7 in Greene, T. W., Wuts, P. G in “Protective Groups in Organic Synthesis”, Third Edition, John Wiley & Sons, New York: 1999, the entire contents of which are hereby incorporated by reference.
In some embodiments, an alkyl or aliphatic chain can be optionally replaced with another atom or group. Examples of such atoms or groups would include, but are not limited to, —NR—, —O—, —S—, —CO2—, —OC(O)—, —C(O)CO—, —C(O)—, —C(O)NR—, —C(═N—CN), —NRCO—, —NRC(O)O—, —SO2NR—, —NRSO2—, —NRC(O)NR—, —OC(O)NR—, —NRSO2NR—, —SO—, or —SO2—, wherein R is defined herein. Unless otherwise specified, the optional replacements form a chemically stable compound. Optional replacements can occur both within the chain and at either end of the chain; i.e. both at the point of attachment and/or also at the terminal end. Two optional replacements can also be adjacent to each other within a chain so long as it results in a chemically stable compound. The optional replacements can also completely replace all of the carbon atoms in a chain. For example, a C3 aliphatic can be optionally interrupted or replaced by —NR—, —C(O)—, and —NR— to form —NRC(O)NR— (a urea).
Unless otherwise specified, if the replacement occurs at the terminal end, the replacement atom is bound to an H on the terminal end. For example, if —CH2CH2CH3 were optionally replaced with —O—, the resulting compound could be —OCH2CH3, —CH2OCH3, or —CH2CH2OH.
Unless otherwise indicated, structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, (Z) and (E) double bond isomers, and (Z) and (E) conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention.
Unless otherwise indicated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
Unless otherwise indicated, a substituent can freely rotate around any rotatable bonds. For example, a substituent drawn as




also represents





Additionally, unless otherwise indicated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13C- or 14C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools or probes in biological assays.
It will also be appreciated that the compounds of the present invention can exist in free form for treatment, or where appropriate, as a pharmaceutically acceptable salt, salts, or mixtures thereof.
As used herein, the term “pharmaceutically acceptable salt” refers to salts of a compound which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19, incorporated herein by reference. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. These salts can be prepared in situ during the final isolation and purification of the compounds. Acid addition salts can be prepared by 1) reacting the purified compound in its free-based form with a suitable organic or inorganic acid and 2) isolating the salt thus formed.
Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, glycolate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, palmoate, pectinate, persulfate, 3-phenylpropionate, phosphate, picrate, pivalate, propionate, salicylate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like. Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N+(C1-4alkyl)4 salts. This invention also envisions the quaternization of any basic nitrogen-containing groups of the compounds disclosed herein. Water or oil-soluble or dispersible products may be obtained by such quaternization.
Base addition salts can be prepared by 1) reacting the purified compound in its acid form with a suitable organic or inorganic base and 2) isolating the salt thus formed. Base addition salts include alkali or alkaline earth metal salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate. Other acids and bases, while not in themselves pharmaceutically acceptable, may be employed in the preparation of salts useful as intermediates in obtaining the compounds of the invention and their pharmaceutically acceptable acid or base addition salts.
The following abbreviations are used:
















DCM
dichloromethane



EtOAc
ethyl acetate



DMSO
dimethyl sulfoxide



ATP
adenosine triphosphate



DTT
dithiothreitol



NMR
nuclear magnetic resonance



HPLC
high performance liquid chromatography



LCMS 
liquid chromatography-mass spectrometry



TLC
thin layer chromatography



Rt
retention time



HEPES
4-(2-hydroxyethyl)-1-piperazine ethane-




sulfonic acid



FBS
fetal bovine serum



PVDF
polyvinylidene fluoride



PBST
phosphate buffered saline with Tween 20



TCF/LEF
T cell factor/lymphoid enhancer factor



DIPEA
diisopropylethylamine










The present invention provides compounds and compositions that are useful as inhibitors of protein kinases. In some embodiments, the protein kinases are GSK-3 kinases.
As inhibitors of protein kinases, the compounds and compositions of this invention are particularly useful for treating or lessening the severity of a disease, condition, or disorder where a protein kinase is implicated in the disease, condition, or disorder. In one aspect, the present invention provides a method for treating or lessening the severity of a disease, condition, or disorder where a protein kinase is implicated in the disease state. In another aspect, the present invention provides a method for treating or lessening the severity of a disease, condition, or disorder where inhibition of enzymatic activity is implicated in the treatment of the disease. In another aspect, this invention provides a method for treating or lessening the severity of a disease, condition, or disorder with compounds that inhibit enzymatic activity by binding to the protein kinase. Another aspect provides a method for treating or lessening the severity of a kinase disease, condition, or disorder by inhibiting enzymatic activity of the kinase with a protein kinase inhibitor.
In some embodiments, said protein kinase inhibitor is a GSK-3 inhibitor.
As inhibitors of protein kinases, the compounds and compositions of this invention are also useful in biological samples. One aspect of the invention relates to inhibiting protein kinase activity in a biological sample, which method comprises contacting said biological sample with a compound of formula I or a composition comprising said compound. The term “biological sample”, as used herein, means an in vitro or an ex vivo sample, including, without limitation, cell cultures or extracts thereof; biopsied material obtained from a mammal or extracts thereof; and blood, saliva, urine, feces, semen, tears, or other body fluids or extracts thereof. The term “biological sample” does not refer to in vivo samples.
Inhibition of protein kinase activity in a biological sample is useful for a variety of purposes that are known to one of skill in the art. Examples of such purposes include, but are not limited to, blood transfusion, organ-transplantation, and biological specimen storage.
Another aspect of this invention relates to the study of protein kinases in biological and pathological phenomena; the study of intracellular signal transduction pathways mediated by such protein kinases; and the comparative evaluation of new protein kinase inhibitors. Examples of such uses include, but are not limited to, biological assays such as enzyme assays and cell-based assays.
The activity of the compounds as protein kinase inhibitors may be assayed in vitro, in vivo or in a cell line. In vitro assays include assays that determine inhibition of either the kinase activity or ATPase activity of the activated kinase. Alternate in vitro assays quantitate the ability of the inhibitor to bind to the protein kinase and may be measured either by radiolabelling the inhibitor prior to binding, isolating the inhibitor/kinase complex and determining the amount of radiolabel bound, or by running a competition experiment where new inhibitors are incubated with the kinase bound to known radioligands.
Inhibition of GSK-3 activity has been linked to stem cell proliferation, differentiation and neuronal plasticity, and angiogenesis. These various functions are implicated in repair and regeneration. Inhibitors of GSK-3 have been shown to sustain self-renewal of embryonic stem cells, promote neuron, beta-cell, myeloid and osteoblast differentiation. (Sato et al, Nature Medicine 10, 55-63, 2004; Ding et al PNAS 100, 7632-37, 2003; Branco et al J Cell Science 117, 5731-37, 2004; Trowbridge et al, Nature Medicine 12, 89-98, 2006; Mussmann et al, JBC (Epub ahead of print) 2007; Kulkarni et al Journal of Bone and Mineral Res. 21, 910-920, 2006) With respect to neuronal plasticity, inhibition of GSK-3 has been shown to be important for regulating polarity, long-term potentiation (LTP) and neurite/axon growth (Hooper et al European J of Neuroscience 25, 81-86, 2007; Kim et al, Neuron 52, 981-996, 2006; Jiang et al Cell 120, 123-135, 2005). Inhibition of GSK-3 also has been shown to induce angiogenesis in endothelial cells (Skurk et al, Circulation Research 96, 308-318, 2005).
Accordingly, one aspect of this invention provides compounds that are useful in cell repair and regeneration. In some embodiments, said compounds are used to promote cell proliferation, cell differentiation, neuronal plasticity, or angiogenesis. In some embodiments, said compounds are chemomodulators of cell differentiation. In other embodiments, said compounds are chemomodulators of repair and regeneration.
In some embodiments, the compounds are used in increasing axonal and dendritic branching in neuronal cells. In some embodiments, the compounds are used to promote neuroplasticity. In other embodiments, the compounds are used to promote angiogenesis. In yet other embodiments, the compounds are used to promote neurogenesis. In yet other embodiments, the compounds are used to treat neuropsychiatric disorders, such as mania and depression.
Another embodiment provides compounds that are used to treat diabetes by promoting beta cell regeneration.
Yet another embodiment provides compounds that are used to treat osteoporosis by osteoblastogenesis.
GSK-3 functions as both a tyrosine and a serine/threonine kinase, similar to the DYRK kinase family. Like the DYRK kinase family, GSK-3 auto-phosphorylates a key tyrosine residue in its kinase domain (GSK-3a, Tyr 279 and GSK-3b, Tyr 216). This tyrosine phosphorylation has been shown to be important for positively modulating kinase activity. Locheed et al, demonstrated that this autophosphorylation occurs intramolecularly at a post-translationally intermediate step prior to maturation and is chaperones-dependent (Lochhead et al, Molecular Cell 24, (2006), pp. 627-633). After maturation, GSK-3 loses its tyrosine kinase activity and acts exclusively as a serine and threonine kinase towards exogenous substrates.
β-catenin is one of the exogenous serine/threonine substrates that GSK-3 phosphorylates. Inhibition of β-catenin phosphorylation leads to an increase in b-catenin levels that in turn translocate to the nucleus and transcriptionally control many genes involved in cellular response and function. One potential safety concern for GSK-3 inhibitors is that use of the inhibitors could lead to hyperproliferation via β-catenin induction. As primarily a serine/threonine kinase GSK-3 is central to many signaling pathways that control multiple cellular activities such as proliferation, differentiation and metabolism.
Accordingly, one aspect of this invention provides compounds that can partially attenuate GSK-3 activity without completely blocking the enzyme and affecting multiple substrates such as β-catenin. One embodiment provides compounds that selectively inhibit the tyrosine autophosphorylation form of the enzyme over the serine/threonine kinase form.
In some embodiments, said enzyme is GSK-3α; in other embodiments, GSK-3β. In some embodiments, said compounds that have a β-catenin:GSK-3β window of at least 25 fold and up to 100 fold. In some embodiments, the compounds have a β-catenin:GSK-3β window of at least 30 fold. In other embodiments, said compounds have a β-catenin:GSK-3α window of at least 400 fold and up to 500 fold.
Surprisingly, compounds that selectively inhibit the auto-phosphorylation of the tyrosine form of the GSK-3 enzyme relative to the serine/threonine kinase form promote neuron growth and dendrite formation, such as by increasing axonal and dendritic branching in neuronal cells. Increasing neuron growth and dendrite formation is advantageous and provides and unexpected and improved therapeutic efficacy when treating many types of degenerative conditions such as Stroke, Post stroke, Spinal Cord Injury, Traumatic Brain Injury, Alzheimer's, Parkinson's, Huntington's, Multiple Sclerosis, Amyotrophic Lateral Sclerosis, Diabetic Neuropathy, Charcot-Marie-Tooth, Leukocytopenia, Diabetes and Osteoporosis.
Compounds that selectively inhibit the auto-phosphorylation of the tyrosine form of the GSK-3 enzyme relative to the serine/threonine kinase form also promote angiogenesis, which is advantageous and provides an unexpected and improved therapeutic efficacy when treating many types of degenerative conditions such as the ones listed herein.
Another aspect of this invention provides compounds that are useful for the treatment of diseases, disorders, and conditions including, but not limited to, autoimmune diseases, inflammatory diseases, proliferative and hyperproliferative diseases, immunologically-mediated diseases, immunodeficiency disorders, immunomodulatory or immunosuppressive disorder, bone diseases, metabolic diseases, neurological and neurodegenerative diseases, neurotrophic factor, cardiovascular diseases, hormone related diseases, diabetes, allergies, asthma, and Alzheimer's disease. Another aspect of this invention provides compounds that are inhibitors of protein kinases, and thus are useful for the treatment of the diseases, disorders, and conditions, along with other uses described herein.
Another aspect provides pharmaceutically acceptable compositions comprising any of the compounds described herein and optionally comprising a pharmaceutically acceptable carrier, adjuvant or vehicle. In certain embodiments, these compositions optionally further comprise one or more additional therapeutic agents.
One aspect of this invention provides a method for the treatment or lessening the severity of a disease, disorder, or condition selected from an autoimmune disease, an inflammatory disease, a proliferative or hyperproliferative disease, such as cancer, an immunologically-mediated disease, an immunodeficiency disorders, a bone disease, a metabolic disease, a neurological or neurodegenerative disease, a cardiovascular disease, allergies, diabetes, asthma, Alzheimer's disease, or a hormone related disease, comprising administering an effective amount of a compound, or a pharmaceutically acceptable composition comprising a compound, to a subject in need thereof.
The term “cancer” includes, but is not limited to, the following cancers: epidermoid Oral: buccal cavity, lip, tongue, mouth, pharynx; Cardiac: sarcoma (angiosarcoma, fibrosarcoma, rhabdomyosarcoma, liposarcoma), myxoma, rhabdomyoma, fibroma, lipoma and teratoma; Lung: bronchogenic carcinoma (squamous cell or epidermoid, undifferentiated small cell, undifferentiated large cell, adenocarcinoma), alveolar (bronchiolar) carcinoma, bronchial adenoma, sarcoma, lymphoma, chondromatous hamartoma, mesothelioma; Gastrointestinal: esophagus (squamous cell carcinoma, larynx, adenocarcinoma, leiomyosarcoma, lymphoma), stomach (carcinoma, lymphoma, leiomyosarcoma), pancreas (ductal adenocarcinoma, insulinoma, glucagonoma, gastrinoma, carcinoid tumors, vipoma), small bowel or small intestines (adenocarcinoma, lymphoma, carcinoid tumors, Karposi's sarcoma, leiomyoma, hemangioma, lipoma, neurofibroma, fibroma), large bowel or large intestines (adenocarcinoma, tubular adenoma, villous adenoma, hamartoma, leiomyoma), colon, colon-rectum, colorectal; rectum, Genitourinary tract: kidney (adenocarcinoma, Wilm's tumor [nephroblastoma], lymphoma, leukemia), bladder and urethra (squamous cell carcinoma, transitional cell carcinoma, adenocarcinoma), prostate (adenocarcinoma, sarcoma), testis (seminoma, teratoma, embryonal carcinoma, teratocarcinoma, choriocarcinoma, sarcoma, interstitial cell carcinoma, fibroma, fibroadenoma, adenomatoid tumors, lipoma); Liver: hepatoma (hepatocellular carcinoma), cholangiocarcinoma, hepatoblastoma, angiosarcoma, hepatocellular adenoma, hemangioma, biliary passages; Bone: osteogenic sarcoma (osteosarcoma), fibrosarcoma, malignant fibrous histiocytoma, chondrosarcoma, Ewing's sarcoma, malignant lymphoma (reticulum cell sarcoma), multiple myeloma, malignant giant cell tumor chordoma, osteochronfroma (osteocartilaginous exostoses), benign chondroma, chondroblastoma, chondromyxofibroma, osteoid osteoma and giant cell tumors; Nervous system: skull (osteoma, hemangioma, granuloma, xanthoma, osteitis deformans), meninges (meningioma, meningiosarcoma, gliomatosis), brain (astrocytoma, medulloblastoma, glioma, ependymoma, germinoma [pinealoma], glioblastoma multiform, oligodendroglioma, schwannoma, retinoblastoma, congenital tumors), spinal cord neurofibroma, meningioma, glioma, sarcoma); Gynecological: uterus (endometrial carcinoma), cervix (cervical carcinoma, pre-tumor cervical dysplasia), ovaries (ovarian carcinoma [serous cystadenocarcinoma, mucinous cystadenocarcinoma, unclassified carcinoma], granulosa-thecal cell tumors, Sertoli-Leydig cell tumors, dysgerminoma, malignant teratoma), vulva (squamous cell carcinoma, intraepithelial carcinoma, adenocarcinoma, fibrosarcoma, melanoma), vagina (clear cell carcinoma, squamous cell carcinoma, botryoid sarcoma (embryonal rhabdomyosarcoma), fallopian tubes (carcinoma), breast; Hematologic: blood (myeloid leukemia [acute and chronic], acute lymphoblastic leukemia, chronic lymphocytic leukemia, myeloproliferative diseases, multiple myeloma, myelodysplastic syndrome), Hodgkin's disease, non-Hodgkin's lymphoma [malignant lymphoma] hairy cell; lymphoid disorders; Skin: malignant melanoma, basal cell carcinoma, squamous cell carcinoma, Karposi's sarcoma, keratoacanthoma, moles dysplastic nevi, lipoma, angioma, dermatofibroma, keloids, psoriasis, Thyroid gland: papillary thyroid carcinoma, follicular thyroid carcinoma; medullary thyroid carcinoma, undifferentiated thyroid cancer, multiple endocrine neoplasia type 2A, multiple endocrine neoplasia type 2B, familial medullary thyroid cancer, pheochromocytoma, paraganglioma; and Adrenal glands: neuroblastoma. Thus, the term “cancerous cell” as provided herein, includes a cell afflicted by any one of the above-identified conditions. In some embodiments, the cancer is selected from colorectal, thyroid, or breast cancer.
In certain embodiments, an “effective amount” of the compound or pharmaceutically acceptable composition is that amount effective in order to treat said disease. The compounds and compositions, according to the method of the present invention, may be administered using any amount and any route of administration effective for treating or lessening the severity of said disease. In some embodiments, said disease is chosen from allergic or type I hypersensitivity reactions, asthma, diabetes, Alzheimer's disease, Huntington's disease, Parkinson's disease, AIDS-associated dementia, bipolar disorder, amyotrophic lateral sclerosis (ALS, Lou Gehrig's disease), multiple sclerosis (MS), schizophrenia, leukocytopenia, cardiomyocyte hypertrophy, reperfusion/ischemia, stroke, baldness, transplant rejection, graft versus host disease, rheumatoid arthritis, and solid and hematologic malignancies. In some embodiments, said disease is chosen from diabetes, bipolar disorder, schizophrenia, stroke, Huntington's disease, leukocytopenia and cardiomyocyte hypertrophy. In some embodiments of this invention, said disease is a protein-kinase mediated condition. In some embodiments, said protein kinase in GSK-3.
The term “protein kinase-mediated condition”, as used herein means any disease or other deleterious condition in which a protein kinase plays a role. Such conditions include, without limitation, autoimmune diseases, inflammatory diseases, proliferative and hyperproliferative diseases, immunologically-mediated diseases, immuno-deficiency disorders, immunomodulatory or immunosuppressive disorder, bone diseases, metabolic diseases, neurological and neurodegenerative diseases, cardiovascular diseases, hormone related diseases, diabetes, allergies, asthma, and Alzheimer's disease.
The term “GSK-3-mediated condition”, as used herein means any disease or other deleterious condition in which GSK-3 plays a role. Such conditions include, without limitation, diabetes, diabetic neuropathy, osteoporosis, Alzheimer's disease, Huntington's disease, Parkinson's disease, AIDS-associated dementia, bipolar disorder, amyotrophic lateral sclerosis (ALS, Lou Gehrig's disease), multiple sclerosis (MS), schizophrenia, leukocytopenia, cardiomyocyte hypertrophy, stroke, spinal cord injury, traumatic brain injury, Charcot-Marie-Tooth, and rheumatoid arthritis.
In some embodiments, said disease is a degenerative condition. In some embodiments, said degenerative condition is chosen from stroke, post-stroke recovery, Alzheimer's Disease, Parkinson's Disease, Huntington's Disease, Amyotrophic Lateral Sclerosis (ALS), multiple sclerosis (MS), spinal cord injury, traumatic brain injury, Charcot-Marie-Tooth, leukocytopenia, diabetes, diabetic neuropathy, and osteoporosis.
In some embodiments, said disease is a neurodegenerative condition. In another embodiment, said neurodegenerative conditions is selected from stroke, post-stroke recovery, Alzheimer's disease, Parkinson's disease, Huntington's disease, Amyotrophic Lateral Sclerosis (ALS), multiple sclerosis (MS), spinal cord injury, traumatic brain injury, and Charcot-Marie-Tooth.
One embodiment provides a method of increasing axonal and dendritic branching in neuronal cells comprising the step of contacting said cells with a compound described herein. Another embodiment provides a method of promoting neuroplasticity comprising the step of contacting said cells with a compound described herein. Another embodiment provides a method of promoting angiogenesis comprising the step of contacting said cells with a compound described herein. Yet another embodiment provides a method of treating neuropsychiatric disorders, such as mania and depression, comprising administering to a patient a compound described herein.
According to one aspect of the invention, said neurodegenerative disease is stroke. In some embodiments, the compounds are used to treat stroke patients during stroke recovery. In some cases, the compounds are used in post-stroke administration. The length of treatment can range from 1 month to one year. In some embodiments, the compound is administered after the stroke has occurred. In some embodiments, said administration occurs immediately after ischemia. In other embodiments, said administration occurs 48 hours after ischemia to 6 months after ischemia. In some embodiments, the compounds are used in combination with other forms of stroke recovery treatment, such as physical therapy.
Another embodiment provides a method of treating diabetes comprising the step of contacting a beta cell with a compound described herein. In some embodiments, the compound promotes beta cell regeneration.
Another embodiment provides a method of treating osteoporosis comprising the step of contacting a bone cell with a compound described herein. In some embodiments, said compound promotes osteoblastogenesis in the cell.
It will also be appreciated that certain of the compounds of present invention can exist in free form for treatment, or where appropriate, as a pharmaceutically acceptable salt or pharmaceutically acceptable derivative thereof.
It should be understood that this invention includes mixtures/combinations of different pharmaceutically acceptable salts and also mixtures/combinations of compounds in free form and pharmaceutically acceptable salts.
As described herein, the pharmaceutically acceptable compositions of the present invention additionally comprise a pharmaceutically acceptable carrier, adjuvant, or vehicle, which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired. Remington's Pharmaceutical Sciences, Sixteenth Edition, E. W. Martin (Mack Publishing Co., Easton, Pa., 1980) discloses various carriers used in formulating pharmaceutically acceptable compositions and known techniques for the preparation thereof. Except insofar as any conventional carrier medium is incompatible with the compounds of the invention, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component(s) of the pharmaceutically acceptable composition, its use is contemplated to be within the scope of this invention.
Some examples of materials which can serve as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, or potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, wool fat, sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients such as cocoa butter and suppository waxes; oils such as peanut oil, cottonseed oil; safflower oil; sesame oil; olive oil; corn oil and soybean oil; glycols; such a propylene glycol or polyethylene glycol; esters such as ethyl oleate and ethyl laurate; agar; buffering agents such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethyl alcohol, and phosphate buffer solutions, as well as other non-toxic compatible lubricants such as sodium lauryl sulfate and magnesium stearate, as well as coloring agents, releasing agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the composition, according to the judgment of the formulator.
The protein kinase inhibitors or pharmaceutical salts thereof may be formulated into pharmaceutical compositions for administration to animals or humans. These pharmaceutical compositions, which comprise an amount of the protein inhibitor effective to treat or prevent a protein kinase-mediated condition and a pharmaceutically acceptable carrier, are another embodiment of the present invention. In some embodiments, said protein kinase-mediated condition is a GSK-3-mediated condition. In some embodiments, a GSK-3-mediated condition.
The exact amount of compound required for treatment will vary from subject to subject, depending on the species, age, and general condition of the subject, the severity of the infection, the particular agent, its mode of administration, and the like. The compounds of the invention are preferably formulated in dosage unit form for ease of administration and uniformity of dosage. The expression “dosage unit form” as used herein refers to a physically discrete unit of agent appropriate for the patient to be treated. It will be understood, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgment. The specific effective dose level for any particular patient or organism will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed, and like factors well known in the medical arts. The term “patient”, as used herein, means an animal, preferably a mammal, and most preferably a human.
The pharmaceutically acceptable compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), bucally, as an oral or nasal spray, or the like, depending on the severity of the infection being treated. In certain embodiments, the compounds of the invention may be administered orally or parenterally at dosage levels of about 0.01 mg/kg to about 50 mg/kg and preferably from about 1 mg/kg to about 25 mg/kg, of subject body weight per day, one or more times a day, to obtain the desired therapeutic effect.
Liquid dosage forms for oral administration include, but are not limited to, pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active compounds, the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof. Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents.
Injectable preparations, for example, sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid are used in the preparation of injectables.
The injectable formulations can be sterilized, for example, by filtration through a bacterial-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions which can be dissolved or dispersed in sterile water or other sterile injectable medium prior to use.
In order to prolong the effect of a compound of the present invention, it is often desirable to slow the absorption of the compound from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material with poor water solubility. The rate of absorption of the compound then depends upon its rate of dissolution that, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered compound form is accomplished by dissolving or suspending the compound in an oil vehicle. Injectable depot forms are made by forming microencapsule matrices of the compound in biodegradable polymers such as polylactide-polyglycolide. Depending upon the ratio of compound to polymer and the nature of the particular polymer employed, the rate of compound release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the compound in liposomes or microemulsions that are compatible with body tissues.
Compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this invention with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules. In such solid dosage forms, the active compound is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium phosphate and/or a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, and silicic acid, b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidinone, sucrose, and acacia, c) humectants such as glycerol, d) disintegrating agents such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate, e) solution retarding agents such as paraffin, f) absorption accelerators such as quaternary ammonium compounds, g) wetting agents such as, for example, cetyl alcohol and glycerol monostearate, h) absorbents such as kaolin and bentonite clay, and i) lubricants such as talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof. In the case of capsules, tablets and pills, the dosage form may also comprise buffering agents.
Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings and other coatings well known in the pharmaceutical formulating art. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polethylene glycols and the like.
The active compounds can also be in microencapsulated form with one or more excipients as noted above. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art. In such solid dosage forms the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch. Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose. In the case of capsules, tablets and pills, the dosage forms may also comprise buffering agents. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes.
Dosage forms for topical or transdermal administration of a compound of this invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches. The active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required. Ophthalmic formulation, eardrops, and eye drops are also contemplated as being within the scope of this invention. Additionally, the present invention contemplates the use of transdermal patches, which have the added advantage of providing controlled delivery of a compound to the body. Such dosage forms can be made by dissolving or dispensing the compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
In addition to the compounds of this invention, pharmaceutically acceptable derivatives or prodrugs of the compounds of this invention may also be employed in compositions to treat or prevent the above-identified disorders.
A “pharmaceutically acceptable derivative or prodrug” means any pharmaceutically acceptable ester, salt of an ester or other derivative of a compound of this invention which, upon administration to a recipient, is capable of providing, either directly or indirectly, a compound of this invention or an inhibitorily active metabolite or residue thereof. Particularly favoured derivatives or prodrugs are those that increase the bioavailability of the compounds of this invention when such compounds are administered to a patient (e.g., by allowing an orally administered compound to be more readily absorbed into the blood) or which enhance delivery of the parent compound to a biological compartment (e.g., the brain or lymphatic system) relative to the parent species.
Pharmaceutically acceptable prodrugs of the compounds of this invention include, without limitation, esters, amino acid esters, phosphate esters, metal salts and sulfonate esters.
Pharmaceutically acceptable carriers that may be used in these pharmaceutical compositions include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.
The compositions of the present invention may be administered orally, parenterally, by inhalation spray, topically, rectally, nasally, buccally, vaginally or via an implanted reservoir. The term “parenteral” as used herein includes, but is not limited to, subcutaneous, intravenous, intramuscular, intra-articular, intra-synovial, intrasternal, intrathecal, intrahepatic, intralesional and intracranial injection or infusion techniques. Preferably, the compositions are administered orally, intraperitoneally or intravenously.
Sterile injectable forms of the compositions of this invention may be aqueous or oleaginous suspension. These suspensions may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil may be employed including synthetic mono- or di-glycerides. Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions. These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant, such as carboxymethyl cellulose or similar dispersing agents which are commonly used in the formulation of pharmaceutically acceptable dosage forms including emulsions and suspensions. Other commonly used surfactants, such as Tweens, Spans and other emulsifying agents or bioavailability enhancers which are commonly used in the manufacture of pharmaceutically acceptable solid, liquid, or other dosage forms may also be used for the purposes of formulation.
The pharmaceutical compositions of this invention may be orally administered in any orally acceptable dosage form including, but not limited to, capsules, tablets, aqueous suspensions or solutions. In the case of tablets for oral use, carriers commonly used include, but are not limited to, lactose and corn starch. Lubricating agents, such as magnesium stearate, are also typically added. For oral administration in a capsule form, useful diluents include lactose and dried cornstarch. When aqueous suspensions are required for oral use, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening, flavoring or coloring agents may also be added.
Alternatively, the pharmaceutical compositions of this invention may be administered in the form of suppositories for rectal administration. These can be prepared by mixing the agent with a suitable non-irritating excipient which is solid at room temperature but liquid at rectal temperature and therefore will melt in the rectum to release the drug. Such materials include, but are not limited to, cocoa butter, beeswax and polyethylene glycols.
The pharmaceutical compositions of this invention may also be administered topically, especially when the target of treatment includes areas or organs readily accessible by topical application, including diseases of the eye, the skin, or the lower intestinal tract. Suitable topical formulations are readily prepared for each of these areas or organs.
Topical application for the lower intestinal tract can be effected in a rectal suppository formulation (see above) or in a suitable enema formulation. Topically-transdermal patches may also be used.
For topical applications, the pharmaceutical compositions may be formulated in a suitable ointment containing the active component suspended or dissolved in one or more carriers. Carriers for topical administration of the compounds of this invention include, but are not limited to, mineral oil, liquid petrolatum, white petrolatum, propylene glycol, polyoxyethylene, polyoxypropylene compound, emulsifying wax and water. Alternatively, the pharmaceutical compositions can be formulated in a suitable lotion or cream containing the active components suspended or dissolved in one or more pharmaceutically acceptable carriers. Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol and water.
For ophthalmic use, the pharmaceutical compositions may be formulated as micronized suspensions in isotonic, pH adjusted sterile saline, or, preferably, as solutions in isotonic, pH adjusted sterile saline, either with or without a preservative such as benzylalkonium chloride. Alternatively, for ophthalmic uses, the pharmaceutical compositions may be formulated in an ointment such as petrolatum.
The pharmaceutical compositions of this invention may also be administered by nasal aerosol or inhalation. Such compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other conventional solubilizing or dispersing agents.
The amount of protein kinase inhibitor that may be combined with the carrier materials to produce a single dosage form will vary depending upon the host treated, the particular mode of administration. Preferably, the compositions should be formulated so that a dosage of between 0.01-100 mg/kg body weight/day of the inhibitor can be administered to a patient receiving these compositions.
It should also be understood that a specific dosage and treatment regimen for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, rate of excretion, drug combination, and the judgment of the treating physician and the severity of the particular disease being treated. The amount of inhibitor will also depend upon the particular compound in the composition.
According to another embodiment, the invention provides methods for treating or preventing a protein kinase-mediated condition (in some embodiments, a GSK-3-mediated condition) comprising the step of administering to a patient one of the above-described pharmaceutical compositions. The term “patient”, as used herein, means an animal, preferably a human.
Preferably, that method is used to treat or prevent a condition selected from cancers such as cancers of the breast, colon, prostate, skin, pancreas, brain, genitourinary tract, lymphatic system, stomach, larynx and lung, including lung adenocarcinoma and small cell lung cancer; stroke, diabetes, myeloma, hepatomegaly, cardiomegaly, Alzheimer's disease, Parkinson's Disease, Huntington's Disease, Amyotrophic Lateral Sclerosis (ALS), multiple sclerosis (MS), spinal cord injury, traumatic brain injury, Charcot-Marie-Tooth, leukocytopenia, diabetic neuropathy, osteoporosis, cystic fibrosis, and viral disease, or any specific disease described above.
Another aspect of the invention relates to inhibiting protein kinase activity in a patient, which method comprises administering to the patient a compound of formula I or a composition comprising said compound.
Depending upon the particular protein kinase-mediated conditions to be treated or prevented, additional drugs, which are normally administered to treat or prevent that condition, may be administered together with the inhibitors of this invention. For example, chemotherapeutic agents or other anti-proliferative agents may be combined with the protein kinase inhibitors of this invention to treat proliferative diseases.
Those additional agents may be administered separately, as part of a multiple dosage regimen, from the protein kinase inhibitor-containing compound or composition. Alternatively, those agents may be part of a single dosage form, mixed together with the protein kinase inhibitor in a single composition.
In some embodiments, said protein kinase inhibitor is a GSK-3 kinase inhibitor.
This invention may also be used in methods other than those involving administration to a patient.
The compounds of this invention may be prepared in general by methods known to those skilled in the art. Those compounds may be analyzed by known methods, including but not limited to LCMS (liquid chromatography mass spectrometry) and NMR (nuclear magnetic resonance). Compounds of this invention may be also tested according to these examples. It should be understood that the specific conditions shown below are only examples, and are not meant to limit the scope of the conditions that can be used for making, analyzing, or testing the compounds of this invention. Instead, this invention also includes conditions known to those skilled in that art for making, analyzing, and testing the compounds of this invention.
EXAMPLES
As used herein, the term “Rt(min)” refers to either HPLC or LCMS retention time, in minutes, associated with the compound.
Unless otherwise indicated, the HPLC method utilized to obtain the reported retention time is as follows:

    
    
        Column: ACE C8 column, 4.6×150 mm
        Gradient: 0-100% acetonitrile+methanol 60:40 (20 mM Tris phosphate)
        Flow rate: 1.5 mL/minute
        Detection: 225 nm.
    
    


LCMS (Liquid Chromatography Mass Spectrometry) samples were analyzed on a MicroMass Quattro Micro mass spectrometer operated in single MS mode with electrospray ionization. Samples were introduced into the mass spectrometer using chromatography. Mobile phase for all mass spec. analysis consisted of acetonitrile-water mixtures with either 0.2% formic acid or 0.1% TFA as a modifier. Column gradient conditions are 10%-90% acetonitrile over 3 mins gradient time and 5 mins run time on a Waters YMC Pro-C18 4.6×50 mm column. Flow rate is 1.5 ml/min.
1H-NMR spectra were recorded at 400 MHz using a Bruker DPX 400 instrument. The following compounds of formula I were prepared and analyzed as follows.




2-chlorobenzimidamide
2-Chlorobenzonitrile (26.84 g, 195 mmol) was added in 6 portions over 25 min to a stirred solution of LHMDS (1M in THF, 400 mL, 400 mmol) in ether (400 mL) with ice-bath cooling under nitrogen. After 5 min, the cooling bath was removed and the stirring continued overnight. After indication that the reaction was complete (monitored via LCMS), aqueous HCl (3M, 400 mL) was added carefully with ice-bath cooling followed by ether (600 mL) and water (600 mL). An extraction was then carried out. The organic layer was re-extracted with aq. HCl (400 mL). The combined aqueous layers were basified with solid NaOH carefully to pH 14 and then extracted with DCM (×3). The organic layer was then dried (K2CO3), filtered and concentrated in vacuo to give the amidine as a white solid (26.93 g, 89.3%).
1H NMR (DMSO) 6.34 (3H, s), 7.32-7.40 (3H, m), 7.46 (1H, dd).




2-(2-chlorophenyl)-5,6-dimethylpyrimidin-4-ol
To 2-chlorobenzimidamide (34.07 g, 220 mmol) and triethylamine (44.50 g, 440 mmol) in ethanol (750 mL) was added ethyl 2-methyl-3-oxobutanoate (38.13 g, 264 mmol). The reaction was heated at 90° C. for 4 h. A further portion (6.36 g) of the ester was added and the reaction was stirred for 3 h. The reaction was concentrated to around 500 mL and stood overnight. Precipitation of the desired pyrimidinol (22.7 g) occurred. The mother liquors were concentrated and DCM and 1M HCl were added. The aqueous layer was extracted 7 times with DCM to give further crops of the desired product (total: 28.9 g, 56%) on concentration as a white solid.
1H NMR (DMSO) 1.97 (3H, s), 2.26 (3H, s), 7.44-7.47 (1H, m), 7.51-7.59 (3H, m), 12.70 (1H, br s).




4-chloro-2-(2-chlorophenyl)-5,6-dimethylpyrimidine
The following reaction was split in two and carried out simultaneously in two identical reaction vessels:
POCl3 (50 mL) was carefully added to the pyrimidinol (14.45 g, 61.6 mmol) the reaction was stirred for 5 min. Then a further portion of POCl3 (100 mL) was added and the reaction was heated to 105° C. After 1 h at this temperature the reaction was concentrated. Ice was added and the reactions run in duplicate were combined with the aid of DCM. The organic layer was washed with brine and water, dried (MgSO4), filtered, and concentrated in vacuo to give the chloropyrimidine (31.14 g, 99.8%) as a colourless oil.
1H NMR (CDCl3) 2.45 (3H, s), 2.65 (3H, s), 7.36-7.39 (2H, m), 7.49-7.51 (1H, m), 7.71-7.73 (1H, m).




The overall synthetic scheme for the synthesis of 5-fluoro-1H-pyrazolo[3,4-b]pyridin-3-amine 5 is depicted below.




2-Chloro-5-fluoronicotinic acid (6)
To a round-bottomed flask under a N2 atmosphere were added degassed DMF (270 mL), Pd(OAc)2 (0.05 eq, 2.7 g, 11.9 mmol), PPh3 (0.1 eq, 6.2 g, 23.8 mmol), and degassed Et3N (6 eq, 200 mL, 1428.6 mmol). The mixture was stirred for 20 minutes, HCOOH (3 eq, 28 mL, 714.3 mmol) was then added. 5 minutes later, 2,6-dichloro-5-fluoronicotinic acid (50 g, 238.1 mmol) was added. The mixture was stirred at 50° C. The reaction was followed by analysis (1H NMR) of a worked-up aliquot. When all starting material was consumed (24 h), the mixture was cooled to 0° C. and water (500 mL) was added. After 20 minutes, The mixture was filtered through a pad of Celite that was rinsed with water. The mixture was basified to pH 9 with 30% aq. NaOH and washed with EtOAc (2×). HCl (12 N) was added slowly to pH 1 and the solution was saturated with NaCl. The mixture was extracted with EtOAc (3×). The combined organic extracts were washed with brine, dried (Na2SO4), and concentrated under reduced pressure to give 37 g (88%) of a beige solid used in the next step without further purification.
1H NMR (DMSO-d6, 300 MHz): δ 8.16 (dd, 1H); 8.58 (d, 1H).
2-Chloro-5-fluoronicotinamide (3)
To a solution of 2-chloro-5-fluoronicotinic acid 6 (50 g, 285 mmol) and DMF (2 mL, 28 mmol) in DCM (400 mL) at 0° C. was added oxalyl chloride (64 mL, 741 mmol) dropwise. The reaction mixture was stirred at room temperature overnight and concentrated in vacuo. The resulting yellow liquid was dissolved in 1,4-dioxane (600 mL), cooled at 0° C. and NH3(g) was bubbled through the solution for 30 minutes. The mixture was stirred at room temperature overnight. The resulting mixture was filtered and the filtrate was concentrated to give compound 3 (44 g, 89%) as a beige solid. 1H NMR (DMSO-d6, 300 MHz): δ 7.84 (s, 1H), 7.96 (dd, 1H), 8.09 (s, 1H), 8.49 (d, 1H).
2-Chloro-5-fluoronicotinonitrile (4)
A suspension of crude compound 3 (65 g, 372.4 mmol) and Et3N (114 mL, 819.2 mmol) in DCM (700 mL) was cooled to 0° C. and TFAA (57 mL, 409.6 mmol) was added dropwise. The resulting yellow solution was stirred for 90 minutes at 0° C., diluted with DCM, washed with sat. aq. NaHCO3 and brine, and dried (Na2SO4). The mixture was filtered and concentrated. Kugel Rohr distillation of the residue ( ̃70° C./1 mbar) gave 50 g (86%) of compound 4 as a beige solid.
Compound 4 can also be purified by column chromatography (SiO2, 8:1 heptane:EtOAc). 1H NMR (CDCl3, 300 MHz): δ 7.78 (dd, 1H); 8.49 (d, 1H).
5-Fluoro-1H-pyrazolo[3,4-b]pyridin-3-amine (5)
To a solution of compound 4 (50 g, 321.7 mmol) in 1-butanol (1 L) was added hydrazine monohydrate (150 mL, 3.2 mol), and the mixture was refluxed for 4 h. The mixture was cooled to room temperature and concentrated. The precipitate was successively washed on filter with water (2×) and Et2O (2×) and dried in vacuo overnight to give compound 5 (44 g, 88%) as a yellow solid. 1H NMR (DMSO-d6, 300 MHz): δ 5.53 (s, 2H); 7.94 (dd, 1H); 8.35 (dd, 1H); 12.02 (s, 1H).
Example 1 (I-1)




N-(2-(2-chlorophenyl)-5,6-dimethylpyrimidin-4-yl)-5-fluoro-1H-pyrazolo[3,4-b]pyridin-3-amine
A mixture of 4-chloro-2-(2-chlorophenyl)-5,6-dimethylpyrimidine (31.14 g, 123 mmol) and 5-fluoro-1H-pyrazolo[3,4-b]pyridin-3-amine (19.65 g, 129 mmol) in NMP (200 mL) was heated at 135° C. for 3 h 30 min. Then the mixture was concentrated in vacuo to around 100 mL. Then added sat aq. NaHCO3, water and EtOAc but a precipitate appeared in the organic layer. Filtered off this whole mixture and washed the residue with sat aq. NaHCO3, water and EtOAc and ether. Boiling ethanol was added to the residue with stirring and the pure target compound was filtered. The liquors were concentrated and this trituration procedure repeated 4 times to give the target (25 g, 55%) as a white solid.
1H NMR (DMSO) 2.28 (3H, s), 2.43 (3H, s), 7.28-7.37 (2H, m), 7.40-7.46 (2H, m), 7.93 (1H, dd), 8.49 (1H, s), 9.28 (1H, br s), 13.39 (1H, br s).
Compound I-2 was made in a manner similar to the method described for making compound I-1. Table 2 below describes analytical data associated with compounds shown in Table 1.










TABLE 2





Cmpd
M + 1
LCMS Rt



#
(obs)
(min)
NMR


















I-1
369.3
1.8
DMSO d6: 2.28 (3H, s), 2.43 (3H, s),





7.28-7.37 (2H, m), 7.40-7.46 (2H, m),





7.93 (1H, dd), 8.49 (1H, s), 9.28





(1H, br s), 13.39 (1H, br s).


I-2
383.1
1.83
DMSO d6: 1.23(t, 3H), 2.53(s, 3H),





2.85(q, 2H), 7.40(dd, 1H), 7.45(dd, 1H),





7.48(dd, 1H), 7.56(d, 1H), 7.96(dd, 1H),





8.51(s, 1H)









Example 2
GSK-3 Inhibition Assay
Compounds of the present invention were screened for their ability to inhibit GSK-3β (AA 1-420) activity using a standard coupled enzyme system (Fox et al., Protein Sci. 1998, 7, 2249). Reactions were carried out in a solution containing 100 mM HEPES (pH 7.5), 10 mM MgCl2, 25 mM NaCl, 300 μM NADH, 1 mM DTT and 1.5% DMSO. Final substrate concentrations in the assay were 20 μM ATP (Sigma Chemicals, St Louis, Mo.) and 300 μM peptide (American Peptide, Sunnyvale, Calif.). Reactions were carried out at 30° C. and 20 nM GSK-3β. Final concentrations of the components of the coupled enzyme system were 2.5 mM phosphoenolpyruvate, 300 μM NADH, 30 μg/ml pyruvate kinase and 10 μg/ml lactate dehydrogenase.
An assay stock buffer solution was prepared containing all of the reagents listed above with the exception of ATP and the test compound of the present invention. The assay stock buffer solution (175 μl) was incubated in a 96 well plate with 5 μl of the test compound of the present invention at final concentrations spanning 0.002 μM to 30 μM at 30° C. for 10 min. Typically, a 12-point titration was conducted by preparing serial dilutions (from 10 mM compound stocks) with DMSO of the test compounds of the present invention in daughter plates. The reaction was initiated by the addition of 20 μl of ATP (final concentration 20 μM). Rates of reaction were obtained using a Molecular Devices Spectramax plate reader (Sunnyvale, Calif.) over 10 min at 30° C. The Ki values were determined from the rate data as a function of inhibitor concentration. Compounds of the invention were found to inhibit GSK-3.
Compounds I-1 and I-2 were found to inhibit GSK-3 at a Ki value of <5 nM.
Example 3
GSK-3α and GSK3β p-TYR Inhibition Assay
Compounds are screened for their ability to inhibit the phosphorylation of tyrosine (TYR) residues through the use of western blotting of Jurkat cells dosed with the compounds. The phosphorylation of the specific TYR residues tested are GSK3α TYR 279 and GSK3β TYR 216.
Preparation of Cells and Lysates
Jurkat cells are seeded at a density of 2×105 cells/well in a 12 well dish in starvation media (RPMI+1% FBS+P/S). Following starvation for 16 hours, the compound is dosed into each well at a final DMSO concentration of 0.3% and cells are incubated o/n at 37° C. 5% CO2. The next day, cells are spun down at 1500 rpm, washed with PBS, and lysed in 100 uL Laemli sample buffer with β-mercaptoethanol.
Western Blot Protocol
15 microliters (uL) of cell lysates are loaded onto a 10% tris-glycine gel and run at 120 v for 2 hours or until dye front runs off of the gel. The protein is then transferred onto a PVDF membrane at 100 v for 60 min. PBST (PBS containing 0.1% Tween 20, such as 1 ml Tween per 1 L of PBS) is then made up and used for all washes and antibody incubations. The blot is blocked in 5% nonfat milk PBST for one hour.
The primary antibody (GSK-3α/β pTYR 279/216 at 1:1000 dilution Upstate cat#05-413) is then added in 50-nonfat milk PBST overnight at 4° C. with gentle rocking. The blot is then washed in PBST for 5 min. This is then repeated 4 times. A secondary anti-mouse-HRP conjugated antibody (1:5000 dilution) is added for 60 min in 5% milk PBST. The blot is then washed in PBST for 5 min. This is also repeated 4 times. 3.0 mL of the developing solution (ECL plus Western Blotting Detection System from Amersham/GE cat#RPN2132) is made and then added. The solution is swirled over the blot for  ̃30 sec. The blot is then developed using CL-Xposure clear blue X-ray film. GAPDH expression level is used as a loading control, (GAPDH antibody: santa cruz 25-778) at 1:10000 dilution.
For determination of GSK-3α and GSK-3β pTYR IC50, the density of the respective bands for each protein at specific compound concentration is compared to a no compound DMSO treated control cell sample present on each exposure. IC50 numbers are defined as the concentration of compound in which the density of the GSK-3α or GSK-3β band is 50% of the no compound control.
Example 4
β-Catenin Stabilization Protocol
GSK-3 phosphorylation of β-catenin targets it to the proteosome for degradation. Inhibition of GSK-3 results in accumulation of β-catenin in the cytosol of cells which through interaction with the transcription factor TCF/LEF translocates to the nucleus and drives the transcription of Wnt-dependent genes. The assay is designed to determine the level of β-catenin dependent TCF/LEF transcriptional activity in a quantitative manner through the use of a β-lactamase reporter assay in Jurkat cells dosed with a compound.
Jurkat β-catenin cells are starved overnight in assay media (1% FBS, 1× Penstrep, RPMI) in the flask. The next day Jurkat β-catenin cells are seeded in 96 well flat bottom plates at a density of 50,000 cells/well in assay media in a volume of 100 ul. The compound is added to the well at a final DMSO concentration of 0.75% and incubated at 37° C. o/n. The next day, 20 uL of 6×CCF4 dye is added to the wells and incubated at room temperature for 1-2 hours. Plates are read on the Cytofluor 4000 series multiwell plate reader and the 460/530 ratio is determined. The GSK-3 IC50 for induction of β-catenin is determined by plotting the 460/530 ratio against the concentration of compound (Log scale) and using the equation of the slope to calculate the point at which the ratio is 50% of the maximum effect.
β-catenin:GSK-3 windows were calculated by dividing the β-catenin IC50 value obtained in Example 4 by the GSK-3α or GSK3β p-TYR IC50 value obtained in Example 3.
Both compounds I-1 and I-2 were found to have a β-catenin:GSK-3α window between 400 and 500 fold. Compound I-1 was found to have a β-catenin:GSK-3β window between 75 and 100 fold and compound 2 was found to have a β-catenin:GSK-3β window between 25 and 50 fold.
Table 3 shows GSK-3α pTYR, GSK-3β pTYR, and β-catenin IC50 data for select compounds of Table 1.












TABLE 3








GSK3a
GSK3b
Beta



Compound
pTYR 279:
pTYR 216:
Catenin



Number
IC50: uM)
IC50: (uM)
IC50: (uM)





















I-1
<0.0005
0.003
0.23



I-2
0.002
0.03
0.94










Example 5
Collection of Cytoplasmic Fractions from Tissues
Hypotonic Lysis Buffer consists of 10 mM HEPES, 10 mM KCL, 1.5 mM MgCl2, 1.0 mM EDTA, 1.0 mM DTT, 1× Roche protease inhibitor cocktail, and 1.0 mM AEBSF Calbiochem protease inhibitor cocktail (cat#539134). All concentrations are final and are diluted in water.
First, hypotonic lysis buffer is added to the tissue at 5×'s weight. The tissue is then broken up on ice using the end of a syringe plunger. Next, the samples are freeze-thawed five times. The lysates are then transferred to ultracentrifuge tubes and spun at 100,000 g for 35 min at 4° C. The supernatants are then collected and an aliquot is taken to measure protein with the Pierce BCA protein assay kit (cat#23225), using BSA standard curve. The remaining protein lysates are diluted 1:1 with laemmli sample buffer containing β-mercaptoethanol. The protein concentration is then normalized. The samples are boiled for 5 min at 95° C. followed by a spin at 14,000 rpm in a mini-centrifuge for 1 min. The samples are then snap frozen with dry ice and stored at −20° C.
Western Protocol
The samples are first loaded on 10% Tris-glycine gel (10 uL/well). The gel is then run at 120V until the dye marker runs off of gel. The PVDF membrane is cut and soaked in methanol for 5 min before use. The protein is then transferred to a PVDF membrane at 100V for 75 min (the transfer rig is kept on ice). The membrane is then blocked with 5% non-fat dry milk dissolved in PBS 0.1% Tween 20 for 1 hr at RT (room temperature). A primary antibody (SC-7199, Santa Cruz rabbit polyclonal anti-human β-catenin) is added at a 1:2000 dilution in block buffer. Optionally, one can run a Beta tubulin loading control (SC-9104) at 1:2000 on the same blot. This is then incubated overnight at 4° C.
The membrane is washed 4 times for 5 min each with PBS 0.1% Tween. Anti-rabbit secondary HRP-conjugated antibody (1:5000 dilution in block buffer) is then added. The membrane is washed 4 times for 5 min each with PBS 0.1% Tween. Next, ECL reagent (Pierce) is added. Finally, the film is exposed. Induction of β-catenin is determined by comparison of the density of protein band in samples obtained from compound treated animals with that of vehicle treated animals.
Example 6
Protein Isolation from Tissues for pTYR Western Blot
RIPA consists of 0.5 ml 10% SDS, 2.5 ml 10% Sodium Deoxycholate, 0.5 ml NP40, and 46.5 ml PBS. The Lysis buffer consists of 8.3 ml of RIPA, 1.0 ml of β-glycerolphosphate (500 mM), 0.1 ml NaF (500 mM), 0.1 ml of Sodium Vanadate (200 mM), 0.4 ml of protease inhibitor (Roche protease inhibitor cocktail tablets: dissolve 1 tablet in 2 ml of water to obtain 25× stock. cat#11873580001), and 0.1 ml of PBS.
10 mL of lysis buffer (modified RIPA) is added to tissue (1 ml/1⁄2 brain) and homogenized on ice. The lysates are then centrifuged at 10000 rpm for 10 min at 4° C. The supernatant is then transferred to a new tube and kept on ice. The supernatant samples are respun at 10000 rpm for 10 min at 4° C. The supernatant is then transferred to a new tube and kept on ice. An aliquot of the supernatant is taken and the protein is measured with the Pierce BCA protein assay kit (cat#23225), using BSA standard curve (do a 1:25 dilution in PBS).
The remaining supernatant is diluted to 1 ug/ul with Biorad Laemmli Sample buffer (cat#161-0737) with β-mercaptoethanol added. The samples are boiled for 5 min at 95° C. and spun in a microfuge for 1 minute. The samples are snap frozen on dry ice and stored at −20° C. 10 ug of protein/lane (10 uL) is then loaded and the Western blot is run according to Example 3. Inhibition of GSK-3α/β pTYR is determined by comparing the density of the protein band in samples obtained from animals treated with compound to samples from vehicle treated animals.
Example 7
Axonal Branching Assay
Compounds are tested for the ability to enhance axonal branching in E16 rat hippocampal or cortical neurons.
Day 1:
Preparation of Cell Plates
1 mg/ml stock of PDL is diluted into 100 μg/ml in DI water. The glass coverslips are coated for at least 1 hour at 37° C. prior to doing the dissection. PDL is aspirated and the plates are rinsed with PBS and air-dried in hood.
Dissociation of E-16 Rat Cortical Cells
Cortical or hippocampal lobes are combined with 9 mL of Base media (Neurobasal+Pen/Strep) and put on ice. 1 mL of 10× trypsin solution is added and the mixture is swirled gently. The tissue is then digested via incubation in a 37° C. waterbath for 20 minutes. After 20 minutes, 10 μl/ml DNase (100 μL DNase) is added and the mixture is incubated for another 5 minutes.
The cells are spun at 1000 rpm for 1 minute. The enzyme solution is then removed without removing any of the brain fragments sitting on the bottom. The solid is washed 3 times with Wash media (Neurobasal+10% and Pen/Strep). After the 3rd wash, the cells are re-suspended in 5 ml of Culture Media (Neurobasal+B27, L-Glutamine and Pen/Strep). Mechanical dissociation is performed by gently pipetting several times through a flame-narrowed glass pipet, taking care not to make bubbles. The cells are then filtered through a 70 μm cell strainer. The cells are counted in a hemacytometer and seeded at 5000-10000 cells/well in a 24 well plate with glass coverslip inserts coated with PDL. The cells are incubated at 37° C. o/n.
Day 2: Cell Maintenance
The next day, half of the media is changed with fresh Culture Media containing retinoic acid (RA). Compounds are added to desired concentration at final DMSO concentration of 0.3%. Half of the media is changed and fresh compound is added every 3 days. Cells are incubated with compounds for 6 days in culture.
Day 7: Fixation and Staining
Materials:


    
    
        1. Phosphate Buffered Saline (PBS)—Gibco 14190-144
        2. Wash buffer=PBS-T:
        
            PBS
            0.1% Tween-20 (Bio Rad, 170-6531)
        
        
        3. Blocking buffer=PBS-T+5% normal donkey serum or HBSS-T+5% normal donkey serum
        
            10 ml of PBS
            0.1% Tween-20 (Bio Rad, 170-6531)
            0.5 ml of normal donkey serum (Jackson Immuno #017-000-121)
        
        
        4. Gel Mount Citi-FluorTM (Ted Pella AF-1)
        5. Neurofilament antibody 1:250 Abcam, MAP2 antibody 1:250 Abcam
        6. Secondary antibody 1:500 for anti-rabbit Alexa 488 (neurofilament) and anti-mouse Alexa 568 (MAP2)

Methods

    
    


Cells are washed twice with PBS if the media contains serum. No wash is required if cells are grown in serum free media.
Fixation
The media or PBS is first removed. Then, 500 uL of HistoChoice is added to cover the cells. The cells are incubated at room temperature for 10 minutes. They are then washed 2 times with PBS, with a 5 minute incubation after each wash. Amounts are shown below:

    
    
        100 ul of PBS per well in 96 well format
        200 ul of PBS per well in 48 well format
        400 ul of PBS per well in 24 well format
    
    


The cells are incubated with blocking buffer for 30 minutes at room temperature. The tissue is then incubated with blocking buffer for 1 hour at room temperature. 1° antibodies are diluted in PBS+0.1% Tween+5% Donkey serum. The blocking solution is removed and sufficient volume of 1° antibody in blocking buffer is added to cover the cells. 1° antibody is incubated at 4° C. overnight. The next day, 1° antibody is removed and coverslips are washed twice with PBS-T with a 5 minute incubation between each wash. The PBS-T is removed and blocking buffer is added. The cells are incubated for 30 minutes.
The 2° antibody is diluted in PBS+0.1% Tween+5% Donkey serum. The mixture is incubated for 30 mins at room temperature. The slides are washed three times with PBS-T and once with PBS. Mounting media is added to reduce quenching of fluorochromes. The glass coverslips are removed and placed on a slide for visualization.
Analysis
Images are captured at 10× and 20× on an upright microscope and axonal branching is determined by quantification of area under threshold fluorescence of neurofilament Alexa 488 per cell. Dendritic branching is determined by quantification of area under threshold fluorescence of MAP2 Alexa 568 per cell. Alternatively, branching can be determined by manual counting of branch points per cell. Compound effects are assessed by comparing the area under threshold fluorescence in compound treated cultures to that of a DMSO control at the same time point. Treatment of E16 hippocampal neurons with 10 nM of Compound I-1 for 7 days resulted in increased axonal and dendritic branching. When E16 hippocampal neurons were treated at concentrations that have been shown to induce β-catenin, axon growth was inhibited further supporting a therapeutic role for the window between GSK-3α/β pTYR and β-catenin.
Example 8
CRMP2 phosphorylation assay
GSK-3 phosphorylation regulates CRMP2 which is involved in the control of axon outgrowth and branching (Yoshimura et al. 2005 Cell, Kim et al. 2006 Neuron). Phosphorylation of CRMP2 by GSK-3 reduces CRMP2 binding to microtubules and thereby reduces axon elongation and branching. Conversely, inhibition of GSK-3, especially at levels that selectively affect TYR residue autophosphorylation, enhances these phenotypes. Compounds are tested in E16 rat hippocampal or cortical neurons to determine the ability to increase the level of axonal branching.
Day 1:
Preparation of Cell Plates
1 mg/ml stock of PDL is diluted into 100 μg/ml in DI water. The glass coverslips are coated for at least 1 hour at 37° C. prior to doing the dissection. PDL is aspirated and the plates are rinsed with PBS and air-dried in hood.
Dissociation of E-16 Rat Cortical Cells
Cortical or hippocampal lobes are combined with 9 mL of Base media (Neurobasal+Pen/Strep) and put on ice. 1 mL of 10× trypsin solution is added and the mixture is swirled gently. The tissue is then digested via incubation in a 37° C. waterbath for 20 minutes. After 20 minutes, 10 μl/ml DNase (100 μL DNase) is added and the mixture is incubated for another 5 minutes.
The cells are spun at 1000 rpm for 1 minute. The enzyme solution is then removed without removing any of the brain fragments sitting on the bottom. The solid is washed 3 times with Wash media (Neurobasal+10% and Pen/Strep). After the 3rd wash, the cells are re-suspended in 5 ml of Culture Media (Neurobasal+B27, L-Glutamine and Pen/Strep). Mechanical dissociation is performed by gently pipetting several times through a flame-narrowed glass pipet, taking care not to make bubbles. The cells are then filtered through a 70 μm cell strainer. The cells are counted in a hemacytometer and seeded at 50,000 cells/well in a 12 well plate. The cells are incubated at 37° C. o/n.
Day 2: Cell Maintenance
The next day, half of the media is changed with fresh Culture Media containing retinoic acid (RA). Compounds are added to desired concentration at final DMSO concentration of 0.3%. Half of the media is changed and fresh compound is added every 3 days. Cells are incubated with compounds for 6 days in culture.
Day 7: Collection of Lysates and Western Blot
Cultures are washed with PBS and lysed directly in 100 uL of Laemli sample buffer with β-mercaptoetanol added.
Western Blot Protocol
7 microliters (uL) of cell lysates are loaded onto a 10% tris-glycine gel and run at 120 v for 2 hours or until dye front runs off of the gel. The protein is then transferred onto a PVDF membrane at 100 v for 60 min. PBST (PBS containing 0.1% Tween 20, such as 1 ml Tween per 1 L of PBS) is then made up and used for all washes and antibody incubations. The blot is blocked in 5% nonfat milk PBST for one hour.
The primary antibody (1:10,000 CRMP2 rabbit polyclonal Abcam #ab36201) is then added in 5%-nonfat milk PBST overnight at 4° C. with gentle rocking. The blot is then washed in PBST for 5 min. This is then repeated 4 times. A secondary anti-mouse-HRP conjugated antibody (1:5000 dilution) is added for 60 min in 5% milk PBST. The blot is then washed in PBST for 5 min. This is also repeated 4 times.
3.0 mL of the developing solution (ECL plus Western Blotting Detection System from Amersham/GE cat#RPN2132) is made and then added. The solution is swirled over the blot for  ̃30 sec. The blot is then developed using CL-Xposure clear blue X-ray film. GAPDH expression level is used as a loading control, (GAPDH antibody: santa cruz 25-778) at 1:10000 dilution. The CRMP2 antibody detects both the unphosphorylated form of CRMP2 and the phosphorylated form of CRMP2 (T514) which is the residue phosphorylated by GSK-3 (Kim et al. 2006 Neuron). The 1050 of compounds for pCRMP2 is defined as the concentration of compound in which the density of the supershifted pCRMP2 band is 50% of the no compound control.
Results
Inhibition of GSK-3 phosphorylation of substrate CRMP-2 correlated with inhibition of GSK-3 pTYR in E16 hippocampal neurons treated for 7 days with compound I-1. CRMP-2 is enriched in the growing axon, and un-phosphorylated CRMP-2 binds to microtubules and promotes axonal branching.
Example 9
In Vitro Model of Angiogenesis Using HUVEC and Skin Fibroblasts
Compounds are screened for the ability to enhance angiogenesis in human umbilical vein endothelial cells (HUVEC). This method, adapted from Nakatsu et al. Microvas. Res. 2003, describes a protocol that recapitulates the major events essential for new vessel growth: budding, cell migration, cell proliferation, lumen formation, branching, and anastomosis.
Protocol:
HUVEC are used between P3 and P4. HUVEC are mixed with dextran coated cytodex 3 micro-carriers (Amersham Pharmacia) at a concentration of 400 HUVEC per bead in 1 ml of EGM-2 (2% FBS) medium (Clonetics). Beads with cells are then shaken gently every 20 min for 4 hr at 37° C. and 5% CO2. After incubating, beads with cells are transferred to a T-25 tissue culture flask and left for 12-16 hr in 5 ml of EGM-2 at 37° C. 5% CO2.
The following day beads with cells are washed three times with EGM-2 and re-suspended at a concentration of 200 cell-coated beads/ml in 2.5 mg/ml of fibrinogen (Sigma) with 0.15 U/ml of aprotinin (Sigma) at a pH of 7.4.
500 ul of fibrinogen/bead solution is then added to 0.625 U of thrombin (Sigma) in one well of a 24 well tissue culture plate. Fibrinogen/Bead solution is allowed to clot for 5 min at room temperature and then at 37° C. 5% CO2 for 20 min. 1 ml of EGM-2 with 0.15 U/ml of aprotinin is then added to each well and equilibrated with the fibrin clot for 30 min at 37° C. and 5% CO2.
Next, media is removed from the well and replaced with 1 ml of fresh medium. 20,000 skin fibroblasts (SF ATCC Detroit 551) are plated on top of the clot and medium is changed every other day.
For compound inhibition studies, a 6 point dose response is performed (1 uM top concentration 1:3 dilutions) in which compound is added to the clot following equilibration.
Angiogenesis is scored by quantification of images captured on an inverted microscope at 10× and 20× magnification for vessel length, number of vessels and branches per bead using NIH Image J software. Optionally, prior to the assay, HUVEC can be spin transduced with a retroviral vector expressing yellow fluorescent protein (YFP) under the control of a constitutively active minimal TK promoter, and sorted for YFP expression to enhance visualization. YFP positive HUVEC are then cultured as described above and quantification of vessel formation is determined by calculating the area under the threshold fluorescence using NIH Image J software. In both cases, enhanced angiogenesis is determined by comparing compound treated cultures with a DMSO control culture at the same time point.
Treatment of HUVEC cultures with Compound I-1 (10 nM) for 7 days resulted in increase vessel and network formation. When HUVEC cultures were treated at concentrations that have been shown to induce β-catenin, vessel formation was inhibited and increased cell proliferation was observed further supporting a therapeutic role for the window between GSK-3α/β pTYR and β-catenin.
Example 10
Post Stroke Recovery MCAO Model
I. General Methods
Adult male Wistar rats are pre-trained on a battery of behavioral tests including: tray reach, gridwalk, forelimb asymmetry (cylinder bracing), forelimb inhibition (swim test) (see below for detailed description of tests). Following pre-stroke behavioral assessment the rats receive surgery during which a stroke is induced. The rats are pseudo-randomly divided into 5 equal groups (n=12) ensuring an equal number of right and left strokes within each treatment group. The first group receives sham surgery with vehicle as treatment. Administration of the test compound and vehicle (dose, route, timing) is determined by the sponsor. The core body temperature is maintained at 37° C. (+/−1°).
Following surgery all animals are behaviorally assessed 1, 7, and 14 d post-stroke. At the conclusion of behavioral assessment all rats undergo an MRI to determine infarct volume. Group behavioral performance and stroke volume are compared between groups using one way analysis of variance to determine therapeutic benefit of the compound in rate and extent of recovery of function following MCAO stroke.
II. Middle Cerebral Artery Occlusion
Each animal is weighed (average weights were 340 g) and then anesthetized with isoflurane (4% isoflurane carried on 2 l/min medical grade oxygen to induce surgical plane and then 2% with 2 l/min oxygen to maintain a surgical plane). Following induction of anesthesia each rat is individually marked with an ear-punch and administered a subcutaneous dose of buprenorphine (0.025 mg/kg). Rectal temperature is monitored and maintained at 37 C+/−1° C. for the duration of the surgery and until the rat is awake and mobile (approximately 3 hr).
The rat is then placed into a stereotaxic apparatus positioned such that the lateral aspect of the head was facing up. The skin between the eye left eye and ear is shaved and washed with surgical antiseptic scrub. A vertical incision is made midway between the right orbit and external auditory canal. The underlying temporalis muscle is incised, detached from the skull and retracted with care to preserve the facial nerve. Two sutures hold the temporal muscle away from the lateral aspect of the skull. A craniotomy is performed from the posterior zygoma and along the temporal ridge of the cranium extending ventrally to expose the middle cerebral artery (MCA) and olfactory tract. The dura is opened, and the base of the MCA and the anterior portion of the first branch is electrocoagulated ventral to the olfactory tract, resulting in infarction of the right dorsolateral cerebral cortex.
Time at which stroke occurred is noted upon completion of the electrocoagulation of the MCA. Once bleeding is controlled, the temporal muscle is replaced and the skin sutured. The rat is then removed from the stereotaxic apparatus and moved to the recovery room. A second subcutaneous dose of buprenorphine (0.025 mg/kg) is administered along with 2 cc of Ringers solution. Water, wet rat chow mash, and a warming blanket under 1⁄2 the cage is made available while in the recovery room. Once the rat is awake and seen to be eating and drinking it is moved back into its cage in the animal colony.
III. Methods for Behavioral Testing
Tray Reaching
Forepaw use is measured with a procedure that is adapted from the method devised by Whishaw, O'Connor, and Dunnett (1986). Each animal is food restricted such that feeding time occurs after testing each day. The animals are placed in test cages (10×18×10 cm high) with floors and fronts constructed of 2-mm bars, 9 mm apart edge to edge. A 4-cm wide and 5-cm deep tray, containing chicken feed pellets, is mounted outside of each box. The rats are required to extend a forelimb through the gap in the bars, grasp, and retract the food.
Animals are trained for 20-30 min per day for a minimum of 10 days, or until a criterion of 50% hits is reached (note: this is 50% for both paws combined). Most rats tend to use exclusively the dominant paw for reaching. If a rat does not reach a criterion of 50% hits within 14 days of training it is excluded from the study. In addition, any rat that appears to be ambidextrous is excluded from the study. Ambidextrous rats use either paw for reaching or reaches equally often with equal success with each paw)
A ‘hit’ is defined as the successful grasping and retrieval of a food pellet that results in consumption of the pellet. A ‘miss’ is defined as the unsuccessful retrieval of a food pellet (either failed to properly grasp pellet, or lost the pellet during the retrieval such that the pellet was not consumed). Percent of hits is calculated as the total number of hits during a session divided by the total number of reaches. This is calculated separately for left and right paw (or affected and unaffected following stoke). Once the criterion of 50% success (involving reaches from both paws) is reached, each rat is video-taped during a 5-min reaching session.
The results of this session serve as pre-surgical baseline. The pre-surgical test session are also be used to determine hand dominance of each rat. The stroke damage is administered within the brain hemisphere that is contralateral to the dominant hand used for reaching. Post surgical testing consists of a 5-min reaching test each week that the animals are tested.
Each session is observed on a monitor using a frame by frame analysis of each reach. Each session is scored by 2 different scorers. The final calculation of percent hits for each scorer is within a 5% range of one another. If a greater disparity between final scores occurs then the session is rescored by both observers.
The percentage of hits for affected and non affected paws for each group is compared among groups using a one-way analysis of variance.
Compound I-1 was tested in the above model. The stroke reliably produced a deficit in reaching performance at 7 and 14 days after surgery. Addition of compound I-1 significantly ameliorated this deficit at 7 and 14 days after stroke compared with vehicle treatment.
Gridwalk
Forelimb and hindlimb coordination are measured using an apparatus that consists of two Plexiglas panels 1 m long and 25 cm wide (5 mm thick) with holes drilled 1 cm apart along one long edge. The panels are placed 2.5 cm apart and connected via several metal bars (3 mm diameter) through the holes. The bars are randomly placed 1, 2, or 3 cm apart. The apparatus is suspended and oriented such that a narrow alley (2.5 cm wide) is formed 1 m long with walls 25 cm high. The bars form the floor.
Each animal is introduced to the apparatus using 3 trials in which the rat is placed at greater distances from the goal box on each subsequent trial. That is, on the first trial the rat is placed on the end of the grid near and facing the goal box. Once the rat has entered the goal box it is placed at the half way point on the grid, again facing the goal box. On the third and final trial the rat is placed at the entrance and allowed to traverse the entire grid to reach the goal box.
This training procedure is done only once for each rat prior to surgery. On all subsequent testing trials the animals are individually placed at the entrance of the apparatus and required to traverse the entire grid to the goal box.
One test session of 3 trials are conducted before stroke. Each test session after stroke includes 3 trials. Each trial is videotaped at close range from a horizontal plane. The tapes are scored by 2 observers using frame-by-frame analysis. The number of right and left (affected and unaffected) forelimb and hindlimb placement errors through the mid 80% of the grid are counted. The mid 80% of the grid is marked on the outside of the apparatus with masking tape. An error is whenever a limb extends (either partially or fully, i.e., just the paw or the entire leg) through the horizontal plane of the bars. The forelimb and hindlimb errors are summed separately for ipsilateral and contralateral limbs over the three trials and analyzed independently. The scores are compared between groups using one-way analysis of variance.
Compound I-1 was tested in the above model. The stroke reliably produced a deficit in reaching performance at 7 and 14 days after surgery. Compound I-1 significantly ameliorated this deficit at 7 and 14 days after stroke.
Forepaw Asymmetry (Cylinder Test)
Forepaw asymmetry of the animals is measured by placing a rat into a clear acrylic cylinder 25 cm in diameter. The cylinder is placed on a clear table with a mirror positioned such that the animal can be filmed from below. This vantage point provides a clear picture of the animal's forepaws as it explores the cylinder.
During exploration rats tend to rear a great deal. With each rear the rat places its forepaws against the side of the cylinder to provide balance and support while investigating the cylinder. Investigation involves leans (while rearing) both to the left and right of the body as well as straight up. A normal rat uses equally both left and right forepaws to brace against the wall. When investigating straight up the wall the rat uses both paws to brace. During the first 20 rears the bracing paw is noted. The first paw that touches the cylinder wall during the rear is counted. Testing continues until 20 rears have been recorded. The video recording is scored by 2 observers. Left and right paw wall touches are counted. Thus, for each brace the score could be L or R or L&R.
One test session occurs prior to surgery and then on the designated post surgical test dates thereafter. The pre-surgery test is used to determine that the rats do not have a preexisting paw bias (that is, more than 15/20 wall touches to one side). If they do show a side bias they are removed from the study. The post surgical scores are expressed as percentage of the touches using the affected (contralateral to stroke insult) paw. Groups are compared on this score using one-way analysis of variance.
Compound I-1 was tested in the above model. The stroke reliably produced a deficit in reaching performance at 7 and 14 days after surgery. Compound I-1 at low dose significantly ameliorated this deficit at 14 days after stroke.
Forelimb Inhibition (Swimming Test)
In normal rats, swimming is accomplished by propulsive strokes of the hind limbs. The forelimbs are normally inhibited from any stroking and are held immobile and together under the animal's chin. Inhibition of the forelimbs is assessed by filming animals during swimming. Animals are introduced into one end of an aquarium (30 w×90 l×43 h cm) filled to a depth of 25 cm with room temperature water ( ̃25° C.) and filmed as they swim to a 9.5 cm square visible platform projecting 2 cm above the surface of the water placed at the opposite end. Scoring of inhibition is done by counting the number of left and right forelimb strokes during three placements into the aquarium. Only the mid 80% of the length is scored. The mid 80% is marked on the outside of the aquarium using masking tape.
A swim is deemed scorable only if the animal does not touch the sides of the aquarium during the swimming trial. Groups are compared on the total number of left and right (affected and unaffected following stroke) forelimb strokes using one-way analysis of variance.
Compound I-1 was tested in the above model. The stroke reliably produced a deficit in reaching performance at 7 and 14 days after surgery. Compound I-1 significantly ameliorated this deficit at 7 and 14 days after stroke.
pTYR Biomarker Analysis
To track the activity of compound I-1 in the CNS of rats subjected to MCAO, brains were removed and protein lysate was obtained (as described in Example 6 herein) from both vehicle treated and compound treated animals at the termination of the study. Lysates were analyzed by Western blot (see Example 3) and probed for GSK-3α/β pTYR levels. Compound I-1 showed a significant reduction in pTYR signal at all doses in the brain compared to vehicle treated rats with no induction of β-catenin.
Adhesive Removal Test
Rats are tested for forelimb somatosensory deficits with the adhesive removal test (Schallert T, et. al., 1984 #3). Each animal receives 3 trials by placing round strips of packing tape (approx. 1.2 cm in diameter) at each testing day and the mean time (seconds) required to remove stimuli from the left forelimb is recorded.
IV. Methods for Molecular and Histological Analysis
Molecular Analysis
Protein lysate is obtained from the brains of all vehicle and compound treated animals and is processed for biomarker analysis of GSK3α/β pTYR and β-catenin by Western blot assay to ensure compound activity on the target.
Cerebral spinal fluid is obtained from all vehicle and compound treated animals and is analyzed for BDNF levels by ELISA as a surrogate marker for neuronal plasticity.
Histological Analysis
Paraffin embedded brain samples are obtained from Neuroinvestigations and cut into 6 um sections onto glass slides and analyzed by immunohistochemistry or immunofluorescence for markers/phenotypes that correlate with beneficial outcomes in post-stroke recovery:
Stem cell mobilization/proliferation: staining for BrdU and analysis using the Aperio system for quantitation of BrdU positive cells in the subventricular zone (SVZ).
Neurogenesis: immunofluorescent staining for doublecortin (DCX) in conjunction with BrdU in the SVZ using manual counting for quantitation.
Angiogenesis: staining for von Willebrand factor VIII (vWF) and analysis using the Aperio system for quantitation of vWF positive cells in the peri-infarct.
While we have described a number of embodiments of this invention, it is apparent that our basic examples may be altered to provide other embodiments that utilize or encompass the compounds, methods, and processes of this invention. Therefore, it will be appreciated that the scope of this invention is to be defined by the appended claims.

## Claims

1. A compound having the following structure:

2. A composition comprising a compound according to claim 1, and a pharmaceutically acceptable carrier, adjuvant, or vehicle.

3. A method of treating or lessening the severity of a disease or condition selected from stroke and diabetic neuropathy comprising the step of administering to a patient a compound according to claim 1.

4. The method of claim 3, wherein the compound is administered after ischemia has occurred.

5. The method of claim 3, wherein the compound is used for post-stroke recovery.

6. The method of claim 3, comprising the additional step of administering to said patient an additional therapeutic agent selected from an agent for treating stroke or an agent for treating diabetic neuropathy.