<PAGE>   1
                                  UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C. 20549
                                    FORM 10-Q

 (MARK ONE)

     X            QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE
   -----
                  SECURITIES EXCHANGE ACT OF 1934
                  FOR THE QUARTERLY PERIOD ENDED JUNE 30, 1999
                                            OR
                  TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF
                  THE SECURITIES EXCHANGE ACT OF 1934

                         COMMISSION FILE NUMBER 1-11871

                      COMMODORE APPLIED TECHNOLOGIES, INC.
             (EXACT NAME OF REGISTRANT AS SPECIFIED IN ITS CHARTER)


<TABLE>
           <S>                                                                       <C>
                           DELAWARE                                                      11-3312952
               -------------------------------                                       -------------------
               (STATE OR OTHER JURISDICTION OF                                        (I.R.S. EMPLOYER
                INCORPORATION OR ORGANIZATION)                                       IDENTIFICATION NO.)


                     150 EAST 58TH STREET
                      NEW YORK, NEW YORK                                                   10155
           ---------------------------------------                                       ----------
           (ADDRESS OF PRINCIPAL EXECUTIVE OFFICE)                                       (ZIP CODE)
</TABLE>


REGISTRANT'S TELEPHONE NUMBER, INCLUDING AREA CODE:   (212) 308-5800


     Indicate by check mark whether the registrant (1) has filed all reports
required to be filed by Section 13 or 15(d) of the Securities Exchange Act of
1934 during the preceding 12 months (or for such shorter period that the
registrant was required to file such reports), and (2) has been subject to such
filing requirements for the past 90 days. Yes [X] No [ ].

     The number of shares the common stock outstanding at August 12, 1999 was
23,702,263.


<PAGE>   2
                      COMMODORE APPLIED TECHNOLOGIES, INC.

                                    FORM 10-Q

                                      INDEX


<TABLE>
<CAPTION>
                                                                                                            PAGE NO.
                                                                                                            --------
<S>               <C>                                                                                       <C>
PART I.           FINANCIAL INFORMATION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .        3
---------         ---------------------
Item 1.           Financial Statements (Unaudited)

                  Condensed Consolidated Balance Sheet -
                           June 30, 1999 and December 31, 1998. . . . . . . . . . . . . . . . . . . . .        3

                  Condensed Consolidated Statement of Operations -
                           Six months ended June 30, 1999 and 1998. . . . . . . . . . . . . . . . . . .        5

                  Condensed Consolidated Statement of Cash Flows Six months
                           ended June 30, 1999 and
                           June 30, 1998. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .        6

                  Notes to Condensed Consolidated Financial Statements. . . . . . . . . . . . . . . . .        7

Item 2.           Management's Discussion and Analysis of Financial
                           Condition and Results of Operations. . . . . . . . . . . . . . . . . . . . .       11

PART II.          OTHER INFORMATION . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .       15
----------        -----------------

SIGNATURES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .       16
</TABLE>


2
<PAGE>   3
                         PART I - FINANCIAL INFORMATION

ITEM 1:  FINANCIAL STATEMENTS


              COMMODORE APPLIED TECHNOLOGIES, INC. AND SUBSIDIARIES

                      CONDENSED CONSOLIDATED BALANCE SHEET
                  (DOLLARS IN THOUSANDS, EXCEPT PER SHARE DATA)


<TABLE>
<CAPTION>
                              ASSETS                                       JUNE 30, 1999                    DECEMBER 31, 1998
                                                                            (unaudited)
<S>                                                                        <C>                              <C>
Current Assets:

         Cash and cash equivalents                                         $         412                    $          1,798
         Accounts receivable, net                                                  4,274                               3,142
         Notes and advances to related parties                                        80                                 130
         Inventory
         Restricted cash and certificates of deposit
         Prepaid assets and other current receivables                                183                                 271
                                                                           -------------                    ----------------
         Total Current Assets                                                      4,949                               5,341

Property and equipment, net                                                        2,614                               2,202
Patents and completed technology, net of accumulated
     amortization of $780 and $339, respectively                                     916                                 977
Goodwill, net of accumulated amortization of $703 and
     $575, respectively                                                            6,969                               7,097
Other                                                                                 28                                  --
                                                                           -------------                    ----------------
Total Assets                                                               $      15,476                    $         15,617
                                                                           =============                    ================
</TABLE>


            See notes to condensed consolidated financial statements.


3
<PAGE>   4
              COMMODORE APPLIED TECHNOLOGIES, INC. AND SUBSIDIARIES

                      CONDENSED CONSOLIDATED BALANCE SHEET
                  (DOLLARS IN THOUSANDS, EXCEPT PER SHARE DATA)

<TABLE>
<CAPTION>
LIABILITIES AND STOCKHOLDERS' EQUITY                                          June 30, 1999                December 31, 1998
                                                                            -----------------              -----------------
<S>                                                                         <C>                            <C>
         Accounts payable                                                   $           1,256              $             975
         Notes payables/related parties                                                     0
         Current portion of long term debt                                                  2                              5
         Line of credit                                                                 1,480                            361
         Other accrued liabilities                                                      2,051                          2,183
                                                                            -----------------              -----------------
         Total Current Liabilities                                                      4,789                          3,524

Notes payable to related parties                                                          185                            185

Commitments and contingencies

STOCKHOLDERS' EQUITY
Convertible Preferred Stock-Series B, C, and
     D par value $0.001 per share, 6%
     non-cumulative dividends 65,000 shares
     authorized, 51,489 shares outstanding.                                                --                             --
 Common Stock, par value $0.001 per share,
      75,000,000 shares authorized, 23,702,263
      issued and outstanding.                                                              24                             24
Accumulated Other Comprehensive Income                                                  3,947                          3,947
Additional paid-in capital                                                             43,382                         43,382
Accumulated deficit                                                                   (36,851)                       (35,445)
                                                                            -----------------              -----------------
Total Stockholders' Equity                                                  $          10,502              $          11,908
                                                                            -----------------              -----------------
Total Liabilities and Stockholders' Equity                                  $          15,476              $          15,617
                                                                            =================              =================
</TABLE>


            See notes to condensed consolidated financial statements.


4
<PAGE>   5
              COMMODORE APPLIED TECHNOLOGIES, INC. AND SUBSIDIARIES
                 CONDENSED CONSOLIDATED STATEMENT OF OPERATIONS
            (UNAUDITED - DOLLARS IN THOUSANDS, EXCEPT PER SHARE DATA)


<TABLE>
<CAPTION>
                                                                        THREE MONTHS ENDED             SIX MONTHS ENDED
                                                                     JUNE 30,        JUNE 30,      JUNE 30,       JUNE 30,
                                                                       1999            1998           1999          1998
                                                                     --------        --------      --------       --------
<S>                                                                  <C>             <C>           <C>            <C>
Contract revenues                                                    $  4,754        $  4,413      $  8,550       $  8,627
Costs and expenses:
         Cost of sales                                                  3,914           4,164         7,368          8,280
         Research and development                                         277             726           562          1,253
         General and administrative                                       903           2,057         1,655          4,049
         Depreciation and amortization                                    177             312           364            607
         Minority interest                                                 --             150            --            300
                                                                     --------        --------      --------       --------
                  Total costs and expenses                              5,722           7,409         9,499         14,489
                                                                     --------        --------      --------       --------
Loss from operations                                                     (517)         (2,996)       (1,399)        (5,862)

Other income (expense):
         Interest income                                                    6              59            23            222
         Interest expense                                                 (15)           (367)          (30)          (611)
                                                                     --------        --------      --------       --------
                  Net other income (expense)                               (9)           (308)           (7)          (389)
                                                                     --------        --------      --------       --------
Loss before income taxes and affiliate losses                            (526)         (3,304)       (1,406)        (6,251)
         Income taxes                                                      --              --            --             --
                                                                     --------        --------      --------       --------
Loss before affiliate losses                                             (526)         (3,304)       (1,406)        (6,251)
         Equity in losses of unconsolidated subsidiaries                   --            (481)           --           (930)
                                                                     --------        --------      --------       --------
         Net loss                                                    $   (526)       $ (3,785)     $ (1,406)      $ (7,181)
                                                                     ========        ========      ========       ========
         Loss per share                                              $  (0.02)       $   (.16)     $  (0.06)      $   (.31)
                                                                     ========        ========      ========       ========
Number of weighted average shares outstanding (000's)                  23,702          23,103        23,702         23,016
                                                                     ========        ========      ========       ========
</TABLE>

            See notes to condensed consolidated financial statements.


5
<PAGE>   6
              COMMODORE APPLIED TECHNOLOGIES, INC. AND SUBSIDIARIES
                 CONDENSED CONSOLIDATED STATEMENT OF CASH FLOWS
            (UNAUDITED - DOLLARS IN THOUSANDS, EXCEPT PER SHARE DATA)


<TABLE>
<CAPTION>
                                                                                     SIX MONTHS ENDED
                                                                                   JUNE 30,    JUNE 30,
                                                                                     1999        1998
                                                                                   --------    --------
<S>                                                                                <C>         <C>
CASH FLOWS FROM OPERATING ACTIVITIES:
     Net loss                                                                      $ (1,406)   $ (7,181)
     Adjustments to reconcile net loss to net cash used in operating activities:
         Depreciation and amortization                                                  364         607
         Undistributed losses of unconsolidated subsidiary                                          930
         Minority interest in subsidiary                                                            300
         Non-cash interest expense                                                                   --
         Changes in assets and liabilities, net of acquisitions:
                Accounts receivable                                                  (1,132)        (92)
                Prepaid assets                                                           88          64
                Inventory                                                                          (190)
                Non cash interest                                                                   344
                Other assets                                                            (28)        (79)
                Accounts payable                                                        281      (1,394)
                Payables to related parties                                               0         (56)
                Other liabilities                                                      (132)         48
                                                                                   --------    --------
                  Net cash provided/(used) in operating activities                   (1,965)     (6,699)

CASH FLOWS FROM INVESTING ACTIVITIES:
      Purchase of equipment                                                            (587)     (1,302)
      Acquisition of patents                                                              0        (137)
      Investments                                                                                (1,750)
      Advances to related parties                                                        50       1,315
      Decrease (increase) in restricted cash                                                         31
      Other investments                                                                   0         259
      Other receivables                                                                              15
                                                                                   --------    --------
                  Net cash provided/(used) in investing activities                     (537)     (1,569)

CASH FLOWS FROM FINANCING ACTIVITIES:
      Net borrowing from principal stockholder                                                    3,450
      Increase in (repayment of) line of credit                                       1,119        (355)
      Proceeds from subsidiary's sale of stock                                                       26
      Increase (decrease) in notes and loans payable                                     (3)        (28)
      Preferred stock dividend paid by subsidiary                                        --        (300)
                                                                                   --------    --------
                  Net cash provided/(used) in financing activities                    1,116       2,793

Increase (decrease) in cash                                                          (1,386)     (5,475)
Cash, beginning of period                                                             1,798      13,151
                                                                                   --------    --------
Cash, end of period                                                                $    412    $  7,676
                                                                                   ========    ========
</TABLE>


            See notes to condensed consolidated financial statements.


6
<PAGE>   7
              COMMODORE APPLIED TECHNOLOGIES, INC. AND SUBSIDIARIES

        NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (UNAUDITED)
                  (DOLLARS IN THOUSANDS, EXCEPT PER SHARE DATA)

                                  JUNE 30, 1999

Note A - Basis of Presentation

         The accompanying unaudited condensed consolidated financial statements
for Commodore Applied Technologies, Inc. and subsidiaries (the "Company" or
"Applied") have been prepared in accordance with generally accepted accounting
principles for interim financial information and with the instructions to Form
10-Q and Article 10 of Regulation S-X. The financial statement information was
derived from unaudited financial statements unless indicated otherwise.
Accordingly, they do not include all of the information and footnotes required
by generally accepted accounting principles for complete financial statements.

         In the opinion of management, all adjustments (consisting of normal
recurring accruals) considered necessary for a fair presentation have been
included. Operating results for the six month period ended June 30, 1999 are not
necessarily indicative of the results that may be expected for the year ending
December 31, 1999.

         The accompanying unaudited condensed consolidated financial statements
should be read in conjunction with the Company's audited financial statements
included in the Company's annual report on Form 10-K for the year ended December
31, 1998.

         Certain prior-year amounts have been reclassified to conform with the
current year presentation. The accompanying financial statements have been
prepared under the assumption that Applied will continue as a going concern.
Such assumption contemplates the realization of assets and the satisfaction of
liabilities in the normal course of business. For the years ended December 31,
1998, 1997, and 1996, Applied incurred losses exclusive of their gains on the
sale of an affiliate and extraordinary item of $13,353,000, $15,694,000 and
$5,643,000, respectively. Applied has also experienced net cash outflows from
operating activities of $9,155,000, $8,220,000 and $7,159,000 for the years
ended December 31, 1998, 1997 and 1996, respectively. Presently, Applied does
not have sufficient cash resources to meet its requirements in 2000. The
financial statements do not include any adjustments that might be necessary
should Applied be unable to continue as a going concern. Applied's continuation
as a going concern is dependent upon its ability to generate sufficient cash
flow to meet its obligations on a timely basis, to obtain additional financing
as may be required, and ultimately to attain profitability. Potential sources of
cash include new contracts, external debt, the sale of new shares of company
stock or alternative methods such as mergers or sale transactions. No assurances
can be given, however, that Applied will be able to obtain any of these
potential sources of cash.

         Anticipated losses on contracts are provided for by a charge to income
during the period such losses are identified. Changes in job performance, job
conditions, estimated profitability (including those arising from contract
penalty provisions) and final contract settlements may result in revisions to
cost and income and are recognized in the period in which the revisions are
determined. Allowances for anticipated losses totaled $132,000 at December 31,
1998 and $118,000 at June, 30, 1999.

         The consolidated financial statements include the accounts of the
Company and its majority-owned subsidiaries. All significant intercompany
balances and transactions have been eliminated. The investment in
Teledyne-Commodore, LLC, a 50% owned joint venture with Teledyne Environmental,
Inc., has been accounted for under the equity method as the Company does not
have a controlling interest in the venture.


7
<PAGE>   8
This investment is carried at $0 at December 31, 1998 and June 30, 1999.

         Until September 1998, Applied was engaged in the separation of
hazardous waste through its 87% owned subsidiary, Commodore Separation
Technologies, Inc. ("Separation"). Effective September 28, 1998, Applied sold
its investments in Separation to Commodore Environmental Services, Inc.

         The preparation of consolidated financial statements in conformity with
generally accepted accounting principles requires management to make estimates
and assumptions that affect the reported amounts of assets and liabilities and
the disclosure of contingent assets and liabilities at the date of the financial
statements and the reported amounts of revenues and expenses during the
reporting period. Actual results could differ from those estimates.



8
<PAGE>   9
Note B - Stockholders' Equity

         In 1997, Applied amended its Certificate of Incorporation authorizing
up to 10,000,000 shares of Preferred Stock, $.001 par value and increasing
authorized shares of Common Stock from 50,000,000 to 75,000,000.

Convertible Preferred Stock

         Effective September 28, 1998, Applied authorized and issued three new
series of Preferred Stock. Series B, C and D Preferred Stock were authorized up
to 25,000, 15,000, and 25,000 shares, respectively, all at $.001 par value. The
Company issued 20,909 shares of Series B, 10,189 shares of Series C and 20,391
shares of Series D effective September 28, 1998.

         Each of the Series B, C and D Preferred Stock is convertible into
common shares of Applied; each has a par value of $.001 and a stated value of
$100 per share; each carries a dividend rate of $6.00 per share per annum from
the date of issuance, payable quarterly commencing December 31, 1998, when, and
if declared by the Board of Directors; and each has non-cumulative dividends.
Applied did not declare any dividend payment through June 30, 1999.

         The Series B, C and D Convertible Preferred Stock is convertible into
Common Stock at any time prior to redemption at a conversion rate of 142.9
shares of Common Stock for each share of Series B and D Convertible Preferred
Stock and 133.3 shares of Common Stock for each share of Series C Convertible
Preferred Stock (and effective conversion price of $.70 and $.75 per share of
Common Stock, respectively). The conversion price is subject to adjustment under
certain circumstances, including Applied taking action to change the number of
Common Shares outstanding, such as declaring a stock dividend.

         The holders of Convertible Preferred Stock have the right, voting as a
class, to approve or disapprove of the issuance of any class or series of stock
ranking senior to or on a parity with the Convertible Preferred Stock with
respect to declaration and payment of dividends or the distribution of assets on
liquidation, dissolution or winding-up. Upon liquidation, dissolution or
winding-up of Applied, holders of Convertible Preferred Stock are entitled to
receive liquidation distributions equivalent to $100.00 per share before any
distribution to holders of the Common Stock or any capital stock ranking junior
to the Convertible Preferred Stock.


9
<PAGE>   10
Note C - Segment Information

         Using the guidelines set forth in SFAS No. 131, "Disclosures About
Segments of an Enterprise and Related Information," Applied has identified three
reportable segments in which it operates based on the services it provides. The
reportable segments are as follows: Commodore Advanced Sciences ("CASI"), which
primarily provides various engineering, legal, sampling and public relations
services to Government agencies on a cost plus basis; Solution, which is
developing and constructing equipment to treat mixed and hazardous waste through
a patented process using sodium and anhydrous ammonia; and through September 28,
1998, Separation, which provides water and contaminant separation by use of a
patented process. Common overhead costs are allocated between segments based on
a record of time spent by executives. Applied evaluates segment performance
based on the segment's net income (loss). Applied's foreign and export sales and
assets located outside of the United States are not significant. Summarized
financial information concerning Applied's reportable segments is shown in the
following table. Effective September 28, 1998, Applied sold its investment in
Separation to Commodore, and accordingly, the summarized information for
Separation is not included in the three and six months ended June 30, 1999.

THREE MONTHS ENDED JUNE 30, 1999

<TABLE>
<CAPTION>
-----------------------------------------------------------------------------------------------------------------------
                                                                                                             Corporate
                                                                                                             Overhead
                                                     Total                CASI             Solution          and Other
                                                   ----------          ----------         ----------         ----------
<S>                                                <C>                 <C>                <C>                <C>
Contract Revenues                                  $    4,754              $4,754         $       -          $       -

Costs and expenses
     Cost of Sales                                      3,914               3,914
     Research and Development                             277                   -                277
     General and Administrative                           903                 433                 27                443
     Depreciation and Amortization                        177                  32                 71                 74
                                                   ----------          ----------         ----------         ----------
              Total costs and expenses                  5,271               4,379                375                517
                                                   ----------          ----------         ----------         ----------
Income (Loss) from Operations                            (517)                375               (375)              (517)

     Interest Income                                        6                                                         6
     Interest Expense                                     (15)                (15)
     Equity in losses of
         Unconsolidated subsidiary
                                                   ----------          ----------         ----------         ----------
Net Income (Loss)                                  $     (526)         $      360         $     (375)        $     (511)
                                                   ==========          ==========         ==========         ==========

Total Assets                                       $   15,476          $    5,015         $    2,094         $    8,367

Expenditures for long-lived assets                 $      322          $       -          $      322         $       -
-----------------------------------------------------------------------------------------------------------------------
</TABLE>


10
<PAGE>   11
SIX MONTHS ENDED JUNE 30, 1999

<TABLE>
<CAPTION>
--------------------------------------------------------------------------------------
                                                                             Corporate
                                                                             Overhead
                                          Total        CASI      Solution    and Other
<S>                                      <C>         <C>         <C>         <C>
Contract Revenues                        $  8,550    $  8,550    $   --      $   --

Costs and expenses
     Cost of Sales                          7,368       7,368
     Research and Development                 562                     562           0
     General and Administrative             1,655         700          33         922
     Depreciation and Amortization            364          59         160         145
                                         --------    --------    --------    --------
              Total costs and expenses      9,949       8,127         755       1,067
                                         --------    --------    --------    --------
Income (Loss) from Operations              (1,399)        423        (755)     (1,067)

     Interest Income                           23                                  23
     Interest Expense                         (30)        (30)
     Equity in losses of
         Unconsolidated subsidiary
                                         --------    --------    --------    --------
Net Income (Loss)                        $ (1,406)   $    393    $   (755)   $ (1,044)
                                         ========    ========    ========    ========

Total Assets                             $ 15,476    $  5,015    $  2,094    $  8,367

Expenditures for long-lived assets       $    587    $   --      $    587    $    --
--------------------------------------------------------------------------------------
</TABLE>


11
<PAGE>   12
THREE MONTHS ENDED JUNE 30, 1998

<TABLE>
<CAPTION>
                                                                                         CORPORATE
                                                                                         OVERHEAD
                                          TOTAL        CASI     SEPARATION   SOLUTION    AND OTHER
<S>                                      <C>         <C>         <C>         <C>         <C>
Contract Revenues                        $  4,413    $  4,357    $   --      $   --      $     56

Costs and expenses
     Cost of Sales                          4,473       3,763         502         186          22
     Research and Development                 416                     (70)        374         112
     General and Administrative             1,907         255         652          21         979
     Depreciation and Amortization            313          23          97         111          82
     Minority Interest                        300                                             300
                                         --------    --------    --------    --------    --------
              Total costs and expenses      7,409       4,041       1,181         692       1,495
                                         --------    --------    --------    --------    --------
Income (Loss) from Operations              (2,996)        316      (1,181)       (692)     (1,439)

     Interest Income                           59                      29                      30
     Interest Expense                        (367)        (38)                               (329)
     Equity in losses of
         Unconsolidated subsidiary           (481)                                           (481)
                                         --------    --------    --------    --------    --------
Net Income (Loss)                        $ (3,785)   $    278    $ (1,152)   $   (692)   $ (2,219)
                                         ========    ========    ========    ========    ========

Total Assets                             $ 25,195    $  3,218    $    134    $  3,756    $ 18,087

Expenditures for long-lived assets       $  1,077    $     77    $    369    $    631    $    --
</TABLE>


12
<PAGE>   13
SIX MONTHS ENDED JUNE 30, 1998

<TABLE>
<CAPTION>
                                                                                         CORPORATE
                                                                                         OVERHEAD
                                          TOTAL        CASI     SEPARATION   SOLUTION    AND OTHER
<S>                                      <C>         <C>         <C>         <C>         <C>
Contract Revenues                        $  8,627    $  8,564    $    --     $    --     $     63

Costs and expenses
     Cost of Sales                          8,280       7,530         501         207          42
     Research and Development               1,253                     369         654         230
     General and Administrative             4,049         492       1,389          41       2,127
     Depreciation and Amortization            607          47         177         221         162
     Minority Interest                        300                                             300
                                         --------    --------    --------    --------    --------
              Total costs and expenses     14,489       8,069       2,436       1,123       2,861
                                         --------    --------    --------    --------    --------

Income (Loss) from Operations              (5,862)        495      (2,436)     (1,123)     (2,798)

     Interest Income                          221                      82                     139
     Interest Expense                        (611)        (66)                               (545)
     Equity in losses of
         Unconsolidated subsidiary           (930)                                           (930)
                                         --------    --------    --------    --------    --------
Net Income (Loss)                        $ (7,182)   $    429    $ (2,354)   $ (1,123)   $ (4,134)
                                         ========    ========    ========    ========    ========

Total Assets                             $ 25,195    $  3,218    $    134    $  3,756    $ 18,087

Expenditures for long-lived assets       $  1,439    $     81    $    475    $    883    $    --
</TABLE>


Note D - Contingencies

         Applied has matters of litigation arising in the ordinary course of
business which in the opinion of management will not have a material adverse
effect on its financial condition or results of operations.


Note E - Acquisition

         In March 1999, Applied entered into a Letter of intent with Global
Energy Investors, LLC ("Global"). Under the terms of the Letter of Intent,
Applied will acquire a 50% interest in Global for $5.0 million worth of Applied
Convertible Preferred Stock and $2.5 million in cash. The Convertible Preferred
Stock will have a conversion price of $.50 per share, will be non-dividend
bearing and Global will be obligated to convert the Preferred Stock into
Applied's Common Stock upon the earlier of March 31, 2001 or when Applied's
Common Stock trades above $.50 per share for twenty days. Applied will also be
obligated to acquire the remaining 50% interest of Global from the Global
shareholders for 12.5 million shares of Applied's Common Stock at such time that
Applied's Common Stock trades for at least $2.00 per share for twenty days. In
April, 1999, both parties signed a definitive agreement with substantially the
same terms as outlined in the Letter of Intent. Applied's acquisition of Global
is conditional upon due diligence and the raising of $10 million in new working
capital for Applied and Global.


13
<PAGE>   14
Note F- Subsequent Event

         On August 20, 1999, CASI received $1,000,000 as a "new advance" under a
First Amendment to its existing revolving line of credit. This advance is
evidenced by a Secured Promissory Note (the "1999 Term Note"). The term note is
repayable in monthly installments in the principal amount of $16,666.67 plus
interest accrued and unpaid interest. The first payment is due August 1, 1999.
Interest will be at prime plus 1 1/2%. Security for the note includes virtually
all property and equipment owned by CASI and CAT.


ITEM 2.  MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION

         AND RESULTS OF OPERATION

Overview

         Commodore Applied Technologies, Inc. and subsidiaries ("Applied"), is
engaged in the destruction and neutralization of hazardous waste from other
materials. Applied owns technologies related to the separation and destruction
of polychlorinated biphenyls (PCBs) and chlorofluorocarbons (CFCs).

         Applied is currently working on the commercialization of these
technologies through development efforts, licensing arrangements and joint
ventures. Through Commodore Advanced Sciences, Inc. ("CASI"), formerly Advanced
Sciences, Inc., a subsidiary acquired on October 1, 1996, Applied has contracts
with various government agencies and private companies in the United States and
abroad. As some government contracts are funded in one-year increments, there is
a possibility for cutbacks as these contracts constitute a major portion of
CASI's revenues, and such a reduction would materially affect the operations.
However, management believes the subsidiary's existing client relationships will
allow Applied to obtain new contracts in the future.


RESULTS OF OPERATIONS

Three and Six months ended June, 30, 1999 compared to Three and Six months ended
June, 30, 1998

         Revenues were $4,754,000 and $8,550,000 for the three and six months
ended June, 30, 1999, as compared to $4,413,000 and $8,627,000 for the three and
six months ended June, 30, 1998. Such revenues were primarily from the Company's
ASI subsidiary, and consisted of engineering and scientific services performed
for the United States government under a variety of contracts, most of which
provide for reimbursement of cost plus fixed fees. Revenue under
cost-reimbursement contracts is recorded under the percentage of completion
method as costs incurred and include estimated fees in the proportion that costs
to date bear to total estimated costs. There have been no major changes in The
Company's customer base during these periods. Cost of sales were $4,179,000 and
$7,368,000 for the three and six months ended June 30, 1999, as compared to
$4,164,000 and $8,280,000 for the three and six month period ended June 30,
1998. The Sale of Separation was the major factor in this variation.

         For the three and six months ended June 30, 1999, the Company incurred
research and development costs of $277,000 and $562,000 as compared to $416,000
and $1,253,000 for the three and six months ended June 30, 1998. Part of the
reorganization plan put in place in late 1998, reduced personnel costs in the
research and development area. Research and development costs include salaries,
wages, and other related costs of personnel engaged in research and development
activities, contract services and materials, test equipment and


14
<PAGE>   15
rent for facilities involved in research and development activities. Research
and development costs are expensed when incurred, except that those costs
related to the design or construction of an asset having an economic useful life
are capitalized, and then depreciated over the estimated useful life of the
asset. Commodore Separation Technologies, Inc. ("Separation"), a former
subsidiary, had research and development costs of $369,000 for the six months
ended June 30, 1998.

         General and administrative expenses for the three and six months ended
June 30, 1999 were $903,000 and $1,655,000 as compared to $1,907,000 and
$4,049,000 for the three and six months ended June 30, 1998. The savings in 1999
are a result of restructuring steps taken during the last half of 1998 and the
sale of Separation.

         Interest expense for the three and six months ended June 30, 1999 was
$15,000 and $30,000 as compared to $367,000 and $611,000 for the three and six
months ended June 30, 1998. Interest changes in 1999 result from favorable rate
and terms on a line of credit put in place in April, 1998. Also, conversion of
significant intercompany debt balances into preferred stock in late 1998 greatly
reduced interest expense in 1999.

         Equity in losses of unconsolidated subsidiary for the three and six
months ended June 30, 1999 was $0 and $0, as compared to $481,000 and $930,000
for the three and six months ended June 30, 1998. The Company's
Teledyne-Commodore, LLC joint venture commenced operations in October 1996. The
Company recorded its liability for all capital contributions at December 31,
1998.

LIQUITY AND CAPITAL RESOURCES

         From its inception through the second quarter of 1996, the Company's
operations were financed principally by loans and investments from its
stockholders. In June 1996, the Company successfully completed its IPO from
which it received net proceeds of approximately $30,500,000. The Company
allocated approximately $12.0 million of the net proceeds for the funding of
proposed collaborative joint ventures, $2.0 million of which was allocated to
Teledyne-Commodore, LLC.

         In July 1996, the Company utilized a portion of the net proceeds from
its IPO to repay an outstanding line of credit of $2.0 million, as well as a
$5,925,426 promissory note to its principal stockholder (the "Environmental
Funding Note"). The Company set aside $1.0 million cash collateral to support a
loan made by a commercial bank to the Company's principal stockholder in
December 1993. In September 1996, such cash collateral was released by the bank.

         In August 1996, the Company loaned $1.5 million to Lanxide Performance
Materials, Inc. ("LPM"), a wholly-owned subsidiary of Lanxide Corporation, a
Delaware Corporation ("Lanxide"). Lanxide is related to the Company by
significant common beneficial ownership. The LPM Note is collateralized by the
assets of LPM and guaranteed by Lanxide. The LPM Note became due on February 28,
1998. In March 1998, the Company transferred the LPM Note to Environmental,
together with $500,000 in cash, as partial prepayment of the $4.0 million
unsecured loan from Environmental to the Company in September 1997.

         In December 1996, the Company acquired (i) all of the outstanding
capital stock of Separation and (ii) all of the outstanding capital stock of CFC
Technologies from Environmental, as part of a corporate restructuring of
Environmental to consolidate all of its current environmental technology
businesses with the Company. In addition, Environmental assigned to the Company
outstanding Separation notes aggregating $976,200 at December 2, 1996,
representing advances previously made by Environmental to Separation, which the
Company has contributed to the equity of Separation. In consideration for the
transfer of all of the outstanding capital stock of Separation and CFC
Technologies to the Company, the Company paid Environmental $3.0 million in cash
and issued to Environmental a warrant expiring December 2, 2003


15
<PAGE>   16
to purchase 7,500,000 shares of Company Common Stock at an exercise price of
$15.00 per share, valued at $2.4 million.

         In April 1997, Separation completed an initial public offering of its
equity securities, from which it received net proceeds of approximately
$11,100,000. Such funds were used primarily to finance Separation's operations
through 1998.

         In August 1997, the Company completed the August 1997 Private Placement
from which it received net proceeds of approximately $1.6 million. In connection
with the sale, the Company incurred cash transaction costs of approximately
$117,000 and issued warrants, expiring on August 15, 2002, to the placement
agent.

         In October 1997, the Company completed the October 1997 Private
Placement from which it received aggregate net proceeds of approximately $2.4
million. In connection with the October 1997 Private Placement, the Company
incurred cash transaction costs of approximately $209,000 and issued warrants,
expiring on September 30, 2002, to the placement agent.

         In September 1997, Environmental provided the Company with a $4.0
million unsecured loan, evidenced by the Convertible Note due August 31, 2002.
In connection with the Convertible Note, the Company issued warrants to purchase
1,000,000 shares of Common Stock to Environmental valued at $660,000 and
provided a beneficial conversion privilege with an intrinsic value of $750,000
as of the date of the transaction. In March 1998, the Company prepaid $2.0
million of the Convertible Note by (i) paying Environmental the sum of $500,000
in cash and (ii) transferring to Environmental the LPM promissory note, dated
August 30, 1996, in the principal amount of $1.5 million. Lanxide, which
specializes in the manufacture of ceramic bonding and refractory materials, is
related to the Company by significant common beneficial ownership. To induce
Environmental to accept the Company's prepayment of $2.0 million of the
Convertible Note (and thereby give up the right to convert $2.0 million of the
Convertible Note into Common Stock), the Company issued to Environmental an
additional warrant to purchase up to 514,000 shares of Common Stock at an
exercise price of $4.50 per share. Such exercise price was fixed at
approximately 110% of the closing sale price of the Common Stock on February 20,
1998, the trading day immediately prior to the date the Board of Directors of
the Company approved such prepayment. The estimated fair value of such warrant
is approximately $340,000. The remaining balance of this Intercompany
Convertible Note was paid off by December 31, 1998.

         At June, 30, 1999 and December 31,1998, CASI had a $1,480,000 and
$361,000 outstanding balance, respectively, on its revolving lines of credit. In
August 1998, CASI refinanced their line of credit. The line of credit is not to
exceed 75% of eligible receivable or $2,000,000 and is due August 4, 2000 with
interest payable monthly at prime plus 1.5 percent (9.25 percent as of June, 30,
1999). The credit line is collateralized by the assets of CASI and is guaranteed
by Applied. This line of credit contains certain financial covenants and
restrictions including minimum ratios that CASI must satisfy. CASI was in
compliance with the covenants at June 30, 1999 and December 31, 1998.

         In addition, the line of credit agreement stipulates that no payments
shall be made to the Company other than monthly scheduled payments of principal
with respect to $6,300,000 of subordinated indebtedness owed by ASI to the
company (which is eliminated in consolidation) and intercompany indebtedness not
to exceed $20,000 in any month. This was subsequently amended to allow up to
five payments of $105,000 each to the Company. In addition, CASI shall not incur
indebtedness in excess of $25,000, other than trade payables, the above
subordinated indebtedness and other contractual obligations to suppliers and
customers incurred in the ordinary course of business.

         In February 1998, Environmental provided the Company with a $5,450,000
uncollateralized loan, evidenced by the Intercompany Note due on the earlier to
occur of (a) December 31, 1999, or (b) consummation of any public offering or
private placement of securities of the Company with net proceeds aggregating in


16
<PAGE>   17
excess of $6.0 million, other than in respect of working capital financing or
secured financing of assets received by the Company in the ordinary course of
business from any bank or other lending institution, subject to certain
conditions. The Company has used the net proceeds of the loan solely for working
capital and general corporate purposes and not for the satisfaction of any
portion of Company debt or to redeem any Company equity or equity-equivalent
securities. During 1998, the Company repaid $828,000 of the principle balance on
this Note before the Note was paid off in its entirety through the September 28,
1998 transaction described below. In connection with the loan, the Company
amended and restated in its entirety a five-year warrant to purchase 7,500,000
shares of Common Stock issued to Environmental on December 2, 1996 to, among
other things, reduce the exercise price of the warrant from $15.00 per share to
$10.00 per share. In addition, the Company issued to Environmental an additional
five-year warrant to purchase 1,500,000 shares of Common Stock at an exercise
price of $10.00 per share.

         Effective September 28, 1998, the Company repaid $6,756,000 of its debt
to Environmental (representing the balances on the September, 1997 Convertible
Note and the February, 1998 Intercompany Note) by exchanging the debt for (i)
10,000,000 shares of Separation Common Stock (as repayment of $1,250,000 of
debt; (ii) 20,909 shares of newly created 6% Series B Convertible Preferred
Stock of the Company (as repayment of $2,090,870 of debt); (iii) 10,189 shares
of newly created 6% Series C Convertible Preferred Stock of the Company (as
repayment of $1,018,864 of debt); (iv) 20,391 shares of newly created 6% Series
D Convertible Preferred Stock of the Company (as repayment of $2,039,100 of
debt); (v) assignment to Environmental of an account receivable due to the
Company from Separation in the amount of $357,000 (as repayment of $357,000 of
debt); and (vi) amendment of an existing warrant owned by Environmental to
purchase 1,500,000 shares of the Company's Common Stock at $10.00 per share,
reducing the exercise price to $1.50 per share. The terms of the debt
restructuring were determined as a result of arm's length negotiations between
representatives of both the Company and Environmental, and were supported by
fairness opinions by an independent, third-party appraiser. Environmental
currently owns approximately 35% of the outstanding shares of the Company's
common stock.

         As part of this restructuring plan, the Company consummated the
transfer of all 10,000,000 of its shares of Common Stock, par value $.001 per
share (the "Separation Stock"), of Separation, representing approximately 87% of
the issued and outstanding shares of capital stock of Separation to Commodore
Environmental Services LLC, a Delaware limited liability company wholly owned by
Commodore. The transfer is effective as of September 28, 1998. Accordingly, the
1998 consolidated financial statements of the Company, include the activity of
Separation only through September 28, 1998. As a result of this sale, the
Company recognized a gain of $4,664,000. The 1999 Condensed Consolidated
Financial Statements reflect no activity for Separation.

         Also, the Company has entered into a definitive agreement to purchase
Global Energy Investors, LLC ("GEI"). The Company believes that this transaction
will be received positively by the investment community and will allow the
merged companies to raise $10,000,000 in new equity capital. This transaction is
scheduled to be completed in the third quarter of 1999.

         For the six months ended June, 30, 1999, the Company incurred a net
loss of $1,406,000 as compared to a net loss of $7,181,000 for the six months
ended June, 30, 1998. For the years ended December 31, 1998, 1997 and 1996, the
Company incurred losses exclusive of their gain on the sale of affiliate and
extraordinary item of $13,353,000, $15,694,000 and $5,643,000,respectively. The
Company has also experienced net cash outflows from operating activities of
$9,155,000, $8,220,000 and $7,159,000 for the years ended December 31, 1998,
1997 and 1996, respectively. At December 31, 1998, 1997 and 1996 the Company had
working capital of $1,817,000, $11,170,000 and $8,838,000, respectively, and
stockholders' equity of $11,908,000, $11,654,000 and $20,076,000, respectively.
The Company's decrease in working capital and stockholders' equity from December
31, 1996 to December 31, 1998 is principally due to the net loss for the period.


17
<PAGE>   18
         Although the Company believes its capital requirements for the
remainder of 1999 will be met through the development of its business, the
Company will be required to obtain financing through external sources. The
Company is currently looking at various alternatives to fund its cash needs
until its operations generate an adequate positive cash flow. Advanced Sciences
has begun repayment of an intercompany loan by borrowing funds through its line
of credit to maximize use of the funds available under the line of credit. This
repayment totals approximately $420,000. Also, the Company completed an
equipment financing loan which will provide the Company with approximately
$1,000,000 working capital. This financing closed in July 1999.


NET OPERATING LOSS CARRYFORWARDS

         The Company has net operating loss carryforwards of approximately
$31,000,000, which expire in the years 2000 through 2018. The amount of net
operating loss carryforward that can be used in any one year will be limited by
the applicable tax laws which are in effect at the time such carryforward can be
utilized. A full valuation allowance has been established to offset any benefit
from the net operating loss carryforwards. It cannot be determined when or if
the Company will be able to utilize the net operating losses.


YEAR 2000 CONSIDERATIONS

         Many existing computer systems and software products are coded to
accept only two-digit entries in the date code field. As the year 2000
approaches, these code fields will need to accept four digit entries to
distinguish between years beginning with "19" from those beginning with "20." As
a result, in less than two years, computer systems and/or software products used
by many companies may need to be upgraded to comply with such year 2000
requirements. If uncorrected, many computer applications could fail or create
erroneous results by or at the year 2000.

         The Company believes that its mainframe database and operating systems
are year 2000 compliant, meaning that they may be able to operate without error
in dates and date-related data, including calculating, comparing, indexing and
sequencing, prior to on and after January 1, 2000. However, certain of the
Company's software applications utilized to bill customers and maintain finance
and accounting records are coded using two digits rather than four to define the
applicable year. The Company is working with its major software vendor to assure
that proper modifications will be made to such applications and anticipates such
modifications will be completed by June 1999. The Company also relies, directly
and indirectly, on external systems of its customers (primarily U.S. government
agencies and contractors), suppliers, creditors, financial organizations and
governmental entities. Consequently, the Company could be affected through the
disruptions in the operations of the enterprises with which the Company
interacts. Furthermore, the purchasing frequency and volume of customers or
potential customers may be affected by year 2000 issues as companies expend
significant resources to make their current systems year 2000 compliant.

         The Company has not quantified the total costs required to become year
2000 compliant, but does not expect that the cost of addressing any year 2000
issues will be a material event or uncertainty that would cause its reported
financial information not to be necessarily indicative of future operating
results or future financial condition, or that the costs or consequences of
incomplete or untimely resolution of any year 2000 issue represent a known
material event or uncertainty that is reasonably likely to affect its future
financial results, or cause its reported financial information not to be
necessarily indicative of future operating results or future financial
condition. As of June, 30, 1999, the total costs incurred to address the
Company's year 2000 issues have not been material (approximately $61,500).
However, if the Company, its customers or vendors encounter any unanticipated
delays in, or costs associated with, the resolution of any year 2000 issue, the
Company's business, financial condition and results of operations could be
materially adversely affected. Accordingly, the


18
<PAGE>   19
Company plans to devote the necessary resources to becoming year 2000 compliant
in a timely manner and intends to create a contingency plan by July 1999 to
handle any year 2000 problems.


FORWARD-LOOKING STATEMENTS

         Certain matters discussed in this Quarterly Report are "forward-looking
statements" intended to qualify for the safe harbors from liability established
by Section 27A of the Securities Act and Section 21E of the Securities Exchange
Act of 1934, as amended (the "Exchange Act"). These forward-looking statements
can generally be identified as such because the context of the statement will
include words such as the Company "believes," "anticipates," "expects" or words
of similar import. Similarly, statements that describe the Company's future
plans, objectives or goals are also forward-looking statements. Such statements
may address future events and conditions concerning, among other things, the
Company's results of operations and financial condition; the consummation of
acquisition and financing transactions and the effect thereof on the Company's
business; capital expenditures; litigation; regulatory matters; and the
Company's plans and objectives for future operations and expansion. Any such
forward-looking statements would be subject to the risks and uncertainties that
could cause actual results of operations, financial condition, acquisitions,
financing transactions, operations, expenditures, expansion and other events to
differ materially from those expressed or implied in such forward-looking
statements. Any such forward-looking statements would be subject to a number of
assumptions regarding, among other things, future economic, competitive and
market conditions generally. Such assumptions would be based on facts and
conditions as they exist at the time such statements are made as well as
predictions as to future facts and conditions, the accurate prediction of which
may be difficult and involve the assessment of events beyond the Company's
control. Further, the Company's business is subject to a number of risks that
would affect any such forward-looking statements. These risks and uncertainties
include, but are not limited to, the ability of the Company to commercialize its
technology; product demand and industry pricing; the ability of the Company to
obtain patent protection for its technology; developments in environmental
legislation and regulation; the ability of the company to obtain future
financing on favorable terms; and other circumstances affecting anticipated
revenues and costs. These risks and uncertainties could cause actual results of
the Company to differ materially from those projected or implied by such
forward-looking statements.


19
<PAGE>   20
                           PART II - OTHER INFORMATION

ITEM 1.  LEGAL PROCEEDINGS

         There have been no material legal proceedings to which the Company is a
party which have not been disclosed in previous filings with the Securities and
Exchange Commission. There are no material developments to be reported in any
previously reported legal proceedings.

ITEM 2.  CHANGE IN SECURITIES

         Not applicable.

ITEM 3.  DEFAULTS AMONG SENIOR SECURITIES

         Not applicable.

ITEM 4.  SUBMISSION OF  MATTERS TO A VOTE OF SECURITY HOLDERS

         Not applicable.

ITEM 5.  OTHER EVENTS

         Not applicable.

ITEM 6.  EXHIBITS AND REPORTS ON FORM 8 - K

         (a) Exhibits - none

         (b) Reports on Form 8-K -

             The Company filed a Current Report on Form 8-K, dated April 21,
             1999, regarding the execution by the Company of a definitive
             agreement to initially acquire a 50% interest in Global Energy
             Investors, LLC.


20
<PAGE>   21
                                   SIGNATURES


Pursuant to the requirements of the Securities Exchange Act of 1934, the
registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.




DATE: AUGUST 14, 1999       COMMODORE APPLIED TECHNOLOGIES, INC.
                            (REGISTRANT)


                            BY    /s/ JAMES M. DE ANGELIS
                              --------------------------------------------------
                                JAMES M. DE ANGELIS - VICE PRESIDENT AND
                                TREASURER (AS BOTH A DULY AUTHORIZED OFFICER OF
                                THE REGISTRANT AND THE PRINCIPAL FINANCIAL
                                OFFICER OF THE REGISTRANT)



21
<PAGE>   22
                               INDEX TO EXHIBITS

EXHIBIT
NUMBER         DESCRIPTION
-------        -----------
  27           Financial Data Schedule