# Patent

## Title
Acid resistant yeast cell and use thereof

## Abstract

Saccharomyces cerevisiae having acid resistance at a pH of about 2.0 to about 5.0, a method of preparing the Saccharomyces cerevisiae, and a method of producing lactate.

## Background
RELATED APPLICATION
This application claims the benefit of Korean Patent Application No. 10-2014-0016790, filed on Feb. 13, 2014, in the Korean Intellectual Property Office, the disclosure of which is incorporated herein in its entirety by reference.
INCORPORATION-BY-REFERENCE OF MATERIAL ELECTRONICALLY SUBMITTED
Incorporated by reference in its entirety herein is a computer-readable nucleotide/amino acid sequence listing submitted herewith and identified as follows: One 41,946 bytes ASCII (Text) file named “718416_ST25.TXT,” created Feb. 11, 2015.
BACKGROUND
1. Field
The present disclosure relates to acid-resistant yeast cells and a method of preparing lactate by using the acid-resistant yeast cells.
2. Description of the Related Art
Organic acids are widely used in various industries. For example, lactate is an organic acid that is widely used in various industries such as food, pharmaceuticals, chemicals, and electronics. Lactate is a low-volatile material that is colorless, odorless, and water-soluble. Lactate is non-toxic to humans, and thus, lactate is used as a flavoring agent, an acidifier, and a preservative. Lactate is also used as a source of polylactic acid (PLA) that is an environmentally friendly, biodegradable plastic known as an alternate polymeric material.
An organic acid may be dissociated into hydrogen ions and negative ions of the organic acid at an acidity higher than a pKa value of the organic acid, for example, under a neutral condition. However, organic acids such as lactic acid exist as free acids, which do not have electromagnetic force under an acidic condition that has a lower pKa than a pKa of the organic acid. The anionic form of the organic acid may not pass through a cell membrane but a free acid form of the organic acid may pass through the cell membrane. Thus, an organic acid outside the cell membrane may flow into a cell from an environment with high concentration of the organic acid, which may decrease intracellular pH. Also, the anionic form of the organic acid is disadvantageous in that a salt needs to be added thereto to separate the organic acid in a salt form. As a result, a cell lacking acid-resistance may lose activity and die under an acidic condition including one or more organic acids.
Thus, there remains a need for an acid-resistant microorganism that retains activity when exposed to acidic conditions.
SUMMARY
Provided is genetically modified Saccharomyces cerevisiae cell having resistance to an acid having a pH of about 2.0 to about 5.0.
Also provided is a method of preparing an acid-resistant variant strain of Saccharomyces cerevisiae, the method comprising treating Saccharomyces cerevisiae cells with a mutagen; culturing the mutagen-treated Saccharomyces cerevisiae yeast cells; and selecting a variant strain of cultured Saccharomyces cerevisiae cells having resistance to an acid having a pH of about 2.0 to about 5.0.
A method of producing lactate also is provided, which method comprises culturing the genetically modified Saccharomyces cerevisiae cell in a cell culture medium, whereby the cell produces cultured products comprising lactate; and retrieving lactate from cultured products.
Additional aspects will be set forth in part in the description which follows and, in part, will be apparent from the description, or may be learned by practice of the presented embodiments.



BRIEF DESCRIPTION OF THE DRAWINGS
These and/or other aspects will become apparent and more readily appreciated from the following description of the embodiments, taken in conjunction with the accompanying drawings in which:
FIG. 1 is a vector map of a p416-CCW12p-LDH vector;
FIG. 2 is a vector map of a pUC57-ura3HA vector;
FIG. 3 is a vector map of a pUC57-CCW12p-LDH-ura3HA vector;
FIG. 4 is a graph displaying cell growth of 5 selected strains of lactic acid resistant yeast cells compared to a control; and
FIG. 5 is a graph displaying the lactic acid yield of 5 selected strains of lactic acid resistant yeast cells compared to control group cells.



DETAILED DESCRIPTION
Reference will now be made in detail to embodiments, examples of which are illustrated in the accompanying drawings, wherein like reference numerals refer to like elements throughout. In this regard, the present embodiments may have different forms and should not be construed as being limited to the descriptions set forth herein. Accordingly, the embodiments are merely described below, by referring to the figures, to explain aspects of the present description. As used herein, the term “and/or” includes any and all combinations of one or more of the associated listed items. Expressions such as “at least one of,” when preceding a list of elements, modify the entire list of elements and do not modify the individual elements of the list.
According to an aspect of the present invention, provided is a genetically modified yeast cell comprising at least one mutation, wherein the yeast cell has acid-resistance at a pH of about 2.0 to about 5.0. In one embodiment the yeast cell is Saccharomyces cerevisiae. 
The term “acid resistant” or “acid resistance” refers to an ability of a genetically modified yeast cell may have acid pH tolerance, i.e., may be tolerant to organic acids at low pH such as a pH of about 2.0 to about 5.0.
Also, the term “acid resistant” or “acid resistance” refers to an ability of a genetically modified yeast cell to exhibit better growth (increased rate of growth) under an acidic condition than a cell of the same type that has not been manipulated (i.e., a cell that has not been genetically modified). Also, the term “acid resistant” refers to an ability of a genetically modified yeast cell to have a higher survival rate under an acidic condition than a cell of the same type that has not been manipulated. Also, the term “acid resistant” refers to the an ability of a genetically modified yeast cell t to exhibit better metabolic processes (e.g., better “metabolizability”) under an acidic condition than a cell of the same type that has not been manipulated. The acidic condition may include an organic acid, an inorganic acid, or a combination thereof. The organic acid may be a C1-C20 organic acid (i.e., an organic acid comprising from about 1 carbon to about 20 carbons). The organic acid may be acetic acid, lactic acid, propionic acid, 3-hydroxy propionic acid, butyric acid, 4-hydroxybutyric acid, succinic acid, fumaric acid, malic acid, oxalic acid, adipic acid, or a combination thereof.
The genetically modified yeast cell may grow better than an unmodified cell of the same type in a pH range of about 2.0 to about 5.0, for example, about 2.0 to about 4.0, about 2.0 to about 3.8, about 2.5 to about 3.8, about 3.0 to about 3.8, about 2.0 to about 3.0, about 2.0 to about 2.7, about 2.0 to about 2.5, or about 2.5 to about 3.0. The “metabolizability” a yeast cell exhibits may be measured through an absorption rate of nutrients for each cell, for example, through an absorption rate of glucose for each cell. Also, the extent of “metabolizability” may be measured through a product release rate, for example, a carbon dioxide release rate of the cell.
In one embodiment, the genetically modified acid-resistant yeast cell may be a lactic acid resistant Saccharomyces cerevisiae cell that has a better growth rate in a lactic acid-containing medium than in a lactic acid free medium. For example, the lactic acid resistant Saccharomyces cerevisiae cell may have a growth rate that is about 1.6 times to about 12.5 times as great as a growth rate of a an unmodified parent strain, e.g., from about 2.0 to about 10, about 3 to about 12, about 5 to about 11, or about 4 to about 9 times greater than an unmodified parent strain.
Also, the lactic acid resistant Saccharomyces cerevisiae cell may have greater lactic acid productivity or yield than a parent cell. For example, the lactic acid resistant Saccharomyces cerevisiae cell may have yield that is about 1.4 times to about 13.4 times as great as yield of the parent cell, e.g., from about 2.0 to about 10, about 3 to about 12, about 5 to about 13, or about 4 to about 9 times greater than an unmodified parent strain. The parent strain may include a parent cell or a wild-type cell from which a genetically modified yeast cell has been derived.
The Saccharomyces cerevisiae with enhanced acid resistance may be prepared through a mutagen treatment of a Saccharomyces cerevisiae cell, particularly a Saccharomyces cerevisiae cell that has been previously modified to inactivate or reduce the activity of a polypeptide that converts pyruvate into acetaldehyde, a polypeptide that converts lactate into pyruvate, a polypeptide that converts dihydroxyacetone phosphate (DHAP) into glycerol-3-phosphate, or a combination thereof compared to an unmodified cell of the same type (e.g., native Saccharomyces cerevisiae); and to increase the activity of a polypeptide that converts pyruvate into lactate compared to an unmodified cell of the same type (e.g., native Saccharomyces cerevisiae). As used herein, the term mutagen treatment refers to exposing a genetically modified yeast cell to chemical agents for a period of time sufficient to cause one or more mutations of the genetic material of the yeast cell. In one embodiment, the mutagen may be a chemical mutagen that introduces GC to AT substitution mutations.
As used herein, the expression “increase in activity” or “increased activity” of an enzyme or a polypeptide may refer to a sufficient increase in the amount thereof or the activity thereof, and may also refer to an activity level of a genetically modified yeast cell or an isolated enzyme produced by a genetically modified yeast cell (i.e., a modified enzyme) that is higher than that of a comparable cell of the same type or an original enzyme of the same type. In other words, the biochemical activity of the polypeptide may be increased by about 5% or more, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 50% or more, about 60% or more, about 70% or more, or about 100% than the same biochemical activity of an unmanipulated enzyme. The enzyme having increased activity may be identified by using a method known in the art.
The expression “inactivated” or “reduced” activity of the enzyme or the polypeptide or an enzyme having “inactivated” or “reduced” activity refers to an activity level at which a genetically modified yeast cell or an isolated enzyme produced by the genetically modified yeast cell (i.e., modified enzyme) shows no activity or the activity level that is lower than that of a comparable cell of the same type or the original enzyme of the same type. In other words, the conversion activity of the enzyme, which is a conversion activity of an enzyme that converts a substrate into a product, may be decreased by about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 55% or more, about 60% or more, about 70% or more, about 75% or more, about 80% or more, about 85% or more, about 90% or more, about 95% or more, or about 100% than the same biochemical conversion activity of an unmanipulated enzyme. A cell including an enzyme having the decreased activity may be identified by using a method known in the art. The inactivation or decreased activity includes a scenarios in which the enzyme produced by the genetically modified yeast cell is inactive or has reduced activity even when the enzyme is expressed and scenarios in which the gene encoding the enzyme is not expressed or has reduced expression than compared to an unmanipulated gene or the unmanipulated cells.
The inactivation or reduced activity of the enzyme may be due to substitution, addition, or deletion of some portions or all of a gene encoding the enzyme. For example, the inactivation or reduced activity of the enzyme may be caused by a homologous recombination, in which a vector including a sequence of some portions of the gene is transformed into a cell, which is then cultured so that the sequence may be homologously recombined with an endogenous gene of the cell, and then selecting homologously recombined cells by using a selection marker.
The terms “disruption,” “disrupted,” and the like used herein refers to reduced expression of a given gene due to a genetic modification. Disruption can be caused by a genetic modification that inhibits expression of a referenced gene (hereinafter, referred to as “inactivation” of a gene.) Disruption includes a genetic modification that causes expression of a gene at decreased levels without completely inhibiting expression (hereinafter, referred to as “attenuation” of a gene.). Expression, in this sense, refers to transcription of a gene product as well as translation of an active gene product. Thus, inactivation of a gene includes a case in which a gene is not transcribed or translated, such that the protein product of the gene is not expressed, and a case in which although a gene is transcribed and translated, the gene product is not functional. Similarly, attenuation includes a case in which transcription or translation of a gene is reduced, as well as a case in which transcription or translation is not reduced, but the gene product has a lower activity level. Herein, the term “a functional product of a gene” means that the gene product (e.g., protein or enzyme) of a parent cell or wild-type cell has a biochemical or physiologic function (for example, enzyme activity). The disruption of the gene includes a functional disruption of the gene.
The term “parent cell” used herein refers to a cell prior to a particular genetic modification (e.g., an “original” cell). For example, in the case of an engineered yeast cell, a yeast cell before being genetically engineered. The “parent cell” is a cell that does not have a particular genetic modification but, in other aspects, the parent cell may be identical to a genetically engineered cell of the same type. Accordingly, the parent cell may be a cell that is used as a starting material for the production of a genetically engineered cell, such as a yeast cell having increased or decreased activity of a particular protein or enzyme.
The term “gene” as used herein refers to a nucleic acid fragment expressing a specific protein and may or may not include a regulatory sequence such as 5′-non-coding sequence and/or 3′-non-coding sequence.
The term “sequence identity” of a nucleic acid or a polypeptide according to an embodiment of the present invention refers to the extent of identity between bases or amino acid residues of sequences after aligning the sequences such that they maximally match in certain comparative regions. The sequence identity is a value calculated by optimally aligning two sequences at certain comparative regions, wherein portions of the sequences at the certain comparative regions may be added or deleted compared to reference sequences. A percentage of sequence identity may be calculated by, for example, comparing two optimally aligned sequences in the entire comparative region, determining the number of locations in which the same amino acids or nucleic acids appear to obtain the number of matched locations, dividing the number of the matched locations by the total number of locations in the comparative region (that is, the size of the range), and multiplying 100 thereto to calculate the percentage of the sequence identity. The percentage of the sequence identity may be calculated by using a known sequence comparison program, and examples of such a program include BLASTN (NCBI), CLC Main Workbench (CLC bio), and MegAlignTM (DNASTAR Inc).
Various levels of sequence identity may be used to identify various types of polypeptides or polynucleotides having the same or similar functions. For example, a sequence identity of about 50% or more, about 55% or more, about 60% or more, about 65% or more, about 70% or more, about 75% or more, about 80% or more, about 85% or more, about 90% or more, about 95% or more, about 96% or more, about 97% or more, about 98% or more, about 99% or more, or 100% may be used.
The mutagen may include a chemical mutagen. The chemical mutagen may be ethyl methane sulfonate (EMS), ethyl ethane sulfonate (EES), methyl methane sulfonate (MMS), N′-nitro-N-ninitrosoguanidine (NTG), ethylene oxide (EO), proflavine, acridine orange, 4-nitroqyinoline 1-oxide (4-NQO), nitrous acid (HNO2), hydroxylamine (NH2OH), dimethyl sulfate (DMS), diethyl sulfate (DES), N-methylcarbazole (NMC), N-nitroso-N-methylurea, N-ethyl-N′-nitro-N-nitrosoguanidine (ENNG), N-methyl-N′-nitro-N-nitrosoguanidine (MNNG), N-ethyl-N-nitrosurea (ENU), N-methyl-N-nitrosourea (MNU), aminocytidine, diazouracil, azacytidine, aminopurine, mercaptopurine, glyoxal, formaldehyde, cumene hydroperoxide (CHP), t-butyl hydroperoxide (BHP), AF-2(2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide), captan, phosmet, or NaN3. In one embodiment, the mutagen may be a chemical that causes substitution of G-C base pairs with A-T base pairs. For example, exposure of a yeast cell to EMS may cause a change a structure of guanine (G) into O-6-ethylguanine. During DNA replication, the O-6-ethylguanine will pair with thymine (T) instead of cytosine (C). Repeated rounds of replication may then result in one or more G-C base pairs to be replaced with A-T base pairs.
The concentration (e.g., volume of EMS per volume of cell culture media) of the chemical mutagen (e.g., EMS) that the yeast cell is exposed to may be about 1% to about 5% (v/v), about 1.5% to about 4.5% (v/v), about 2% to about 4% (v/v), about 2.5% to about 3.5% (v/v), or about 3% (v/v). The time the yeast cell is exposed to the chemical mutagen (e.g., EMS) may be about 15 minutes to about 90 minutes, about 30 minutes to about 90 minutes, about 45 minutes to about 90 minutes, about 60 minutes to about 90 minutes, or about 75 minutes to about 90 minutes.
Mutagen treatment of genetically modified yeast cell can result in the formation of a variant strain of the genetically modified yeast cell with acid-resistance and increased growth and/or metabolic activity compared to a non-variant strain of the genetically modified yeast cell. In one embodiment, the mutagen-treated yeast cell may be cultured, and the cultured yeast cells may be selected to obtain lactic acid resistant Saccharomyces cerevisiae, which may have an accession number of KCTC 12532BP. The selection of an acid resistant variant strain of the genetically modified yeast cell from the cell culture medium may be performed by selecting yeast cells which exhibit increased growth, metabolic activity, and/or acid resistance compared to non-variant strains of the same type in the cell culture medium after incubation for a period of time. For example, selection can comprise incubation of the mutagen treated cells in a cell culture medium having a pH from about 2.0 to about 5.0 for a period of time and selection of surviving colonies, which exhibit increased growth and/or metabolic activity compared to a nonmutagen treated yeast cells of the same type.
The Saccharomyces cerevisiae to be treated with a mutagen may be a strain engineered to inactivate or reduce the activity of a polypeptide that converts pyruvate into acetaldehyde compared to an unmodified cell of the same type. The polypeptide that converts pyruvate into acetaldehyde may be an enzyme that is classified as EC 4.1.1.1. For example, the polypeptide may be a pyruvate decarboxylase. The polypeptide that converts pyruvate into acetaldehyde may have an amino sequence SEQ ID NO: 1 and an amino acid sequence having a sequence identity of 50% or greater, 70% or greater, 80% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, 99% or greater, or 100%. The gene that codes the polypeptide that converts pyruvate into acetaldehyde may include a nucleotide sequence of SEQ ID NO: 4. The gene may be pdc1 that codes for pyruvate decarboxylase (Pdc).
The Saccharomyces cerevisiae to be treated with a mutagen may be a strain engineered to inactivate or reduce the activity of a polypeptide that additionally converts lactate into pyruvate compared to an unmodified cell of the same type. The polypeptide that converts lactate into pyruvate may be a cytochrome c-dependent enzyme. The polypeptide that converts lactate into pyruvate may be a lactate cytochrome-c oxydoreductase (Cyb2). The lactate cytochrome c-oxydoreductase may be an enzyme that is classified as EC 1.1.2.4, which acts on D-lactate or EC 1.1.2.3, which acts on L-lactate. The polypeptide that converts lactate into pyruvate may include an amino acid sequence having a sequence identity to an amino acid sequence of SEQ ID NO: 2 of about 50% or greater, 70% or greater, 80% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, 99% or greater, or 100%. The gene that codes for a polypeptide that converts lactate into pyruvate may have a nucleotide sequence of SEQ ID NO: 5.
The Saccharomyces cerevisiae to be treated with a mutagen may be a strain engineered to inactivate or reduce the activity of a polypeptide that additionally converts DHAP into glycerol-3-phosphate compared to an unmodified cell of the same type. The polypeptide that additionally converts DHAP into glycerol-3-phosphate may be a cytosol glycerol-3-phosphate dehydrogenase may be an enzyme that catalyzes reduction of DHAP into glycerol-3-phosphate through an oxidation of NADH into NAD+. The Gpd1 may belong to EC 1.1.1.8. The Gpd1 may have an amino acid sequence having a sequence identity to an amino acid sequence of SEQ ID NO: 3 of about 50% or greater, 70% or greater, 80% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, 99% or greater, or 100%. The gene that encodes the Gpd1 may have a nucleotide sequence of SEQ ID NO: 6.
The Saccharomyces cerevisiae to be treated with a mutagen may be engineered to have an increased rate of conversion of pyruvate into lactate compared to an unmodified cell of the same type. The conversion of pyruvate into lactate may be sufficiently increased to produce lactate. The conversion of pyruvate into lactate may be increased due to increased insertion and expression of the polypeptide that converts pyruvate into lactate into the yeast cell. The increased expression may be due to increased copy number of the gene or changes to a regulatory sequence of the gene. The increased copy number of the gene may be due to an amplification of an endogenous gene or introduction of an exogenous gene. The mutation of the regulatory region of the gene may be caused by mutation of a regulatory region of the endogenous gene. The exogenous gene may be a homogenous or a heterogeneous gene.
The polypeptide that converts pyruvate into lactate may be a lactate dehydrogenase. The lactate dehydrogenase may catalyze conversion of pyruvate into lactate. The lactate dehydrogenase may be an NAD(P)-dependent enzyme and may also act on L-lactate or D-lactate. The NAD(P)-dependent enzyme may be an enzyme classified as EC 1.1.1.27, which acts on L-lactate or as EC 1.1.1.28, which acts on D-lactate.
A polynucleotide that encodes the lactate dehydrogenase may be derived from bacteria, yeast, fungi, a mammal, or a reptile. The polynucleotide may a polynucleotide encoding at least one lactate dehydrogenase selected from Pelodiscus sinensis japonicus, Ornithorhynchus anatinus, Tursiops truncatus, Rattus norvegicus, or Xenopus laevis. The lactate dehydrogenase derived from Pelodiscus sinensis japonicus, the lactate dehydrogenase derived from Ornithorhynchus anatinus, the lactate dehydrogenase derived from Tursiops truncatus, and the lactate dehydrogenase derived from Rattus norvegicus may have an amino acid sequence having a sequence identity of about 50% or greater, 70% or greater, 80% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, 99% or greater, or 100% to SEQ ID NO: 7, 8, 9, and 10, respectively. The gene encoding the lactate dehydrogenase may have a nucleotide sequence of SEQ ID NO: 11.
The polynucleotide coding for the Ldh may be a vector including an Ldh derived from bacteria, yeast, fungi, a mammal, or a reptile. The vector may include an origin of replication, a promoter, a polynucleotide coding for a lactate dehydrogenase, and a terminator. The origin of replication may include an autonomous replication sequence (ARS). The ARS may be stabilized by a centrometric sequence (CEN). The promoter may be selected from the group consisting of a CYC promoter, a TEF promoter, a GPD promoter, and an ADH promoter. The CYC promoter, the TEF promoter, the GPD promoter, and the ADH promoter may include nucleotide sequences having SEQ ID NO: 13, 14, 15, and 16. The terminator may be selected from the group consisting of phosphoglycerate kinase 1 (PGK1), cytochrome c transcription (CYC1), and GAL1. The CYC1 terminator may have a nucleotide sequence of SEQ ID NO: 17. The vector may further include a selection marker.
The polynucleotide coding for Ldh may be included in a genome of a yeast cell. When the polynucleotide coding for Ldh produces an active protein in a cell, the polynucleotide is considered as “functional” in the cell. The yeast cell including the polynucleotide coding for an L-lactate dehydrogenase or a D-lactate dehydrogenase may produce an L-lactate enantiomer or a D-lactate enantiomer, or a salt thereof.
The Saccharomyces cerevisiae to be treated with a mutagen may include a polynucleotide coding for a single Ldh or a polynucleotide coding for a plurality of Ldhs having a copy number of 1 to 10. The polynucleotide coding for the plurality of Ldhs may be a polynucleotide coding for an Ldh having a copy number of 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, or 1 to 3. When the yeast cell includes the polynucleotide coding for the plurality of Ldhs, each polynucleotide may include a copy of the same polynucleotide or a copy of a polynucleotide coding for two or more different Ldhs. A plurality of copies of a polynucleotide coding for an exogenous Ldh may be included in the same locus or in many loci in a genome of a host cell.
Also, the Saccharomyces cerevisiae cell to be treated with a mutagen may be a strain engineered to inactivate or reduce the activity of a polypeptide that converts pyruvate into acetaldehyde, a polypeptide that converts lactate into pyruvate, a polypeptide that converts DHAP into glycerol-3-phosphate, or a combination thereof compared to an unmodified cell of the same type and has increased activity of a polypeptide that converts pyruvate into lactate compared to an unmodified cell of the same type.
As a specific example of a Saccharomyces cerevisiae to be treated with a mutagen, the Saccharomyces cerevisiae may be a strain deposited in Korean Collector for Type Culture (KCTC) on May 30, 2013 under accession number KCTC 12415BP.
Also provided is a method of preparing a variant strain of Saccharomyces cerevisiae, the method comprising treating Saccharomyces cerevisiae yeast cells with a mutagen; culturing mutagen-treated yeast cells; and selecting cultured the yeast cells that grow in the cell culture medium. By treating genetically modified Saccharomyces cerevisiae yeast cells with a mutagen, the mutagen causes a mutation in at least one genetically modified Saccharomyces cerevisiae yeast cell to form a variant strain of genetically modified Saccharomyces cerevisiae. Culturing mutagen-treated genetically modified Saccharomyces cerevisiae yeast cells in a cell culture medium having a pH from about 2.0 to about 5.0, whereby the variant strain of genetically modified Saccharomyces cerevisiae with greater acid resistance grows at a higher rate compared to other strains. Selecting the variant strain of genetically modified Saccharomyces cerevisiae from the cell culture medium based upon the higher growth rate of the acid-resistant variant strain thereby allows selection of a desired variant strain with acid resistance.
All aspects of the Saccharomyces cerevisiae prepared according to the method are as described herein with respect to other embodiments. Thus, for instance, the variant strain of Saccharomyces cerevisiae may have acid-resistance to lactic acid having a pH of about 2.0 to about 5.0.
The mutagen may include a chemical mutagen. The chemical mutagen may be EMS, EES, MMS, N′-nitro-N-ninitrosoguanidine (NTG), EO, proflavine, acridine orange, 4-NQO, HNO2, NH2OH, DMS, DES, NMC, N-nitroso-N-methylurea, ENNG, MNNG, ENU, MNU, aminocytidine, diazouracil, azacytidine, aminopurine, mercaptopurine, glyoxal, formaldehyde, CHP, BHP, AF-2(2-(2-furyl)-3-(5-nitro-2-furyl)acrylamide), captan, phosmet, or NaN3. For example, treating of the NTG to a microorganism may produce mutant from the microorganism which is able to grow in an acidic condition (see Sheng Wu Gong Cheng Xue Bao. (Liu et al.) “Breeding of monofluoroacetate-resistant strains of Actinobacillus succinogenes and the mechanism based on metabolic flux analysis,” 2008 March; 24(3):460-7.). In one embodiment, the mutagen may be a chemical that causes substitution of G-C base pairs with A-T base pairs, such as EMS.
In the method described above, a concentration of the EMS may be about 1% (v/v) to about 5% (v/v), about 1.5% (v/v) to about 4.5% (v/v), about 2% (v/v) to about 4% (v/v), about 2.5% to about 3.5% (v/v), or about 3% (v/v). Also, treatment duration of the EMS may be about 15 minutes to about 90 minutes, about 30 minutes to about 90 minutes, about 45 minutes to about 90 minutes, about 60 minutes to about 90 minutes, or about 75 minutes to about 90 minutes.
In the method described above, the yeast cell to be treated with a mutagen may be modified (genetically engineered) to inactivate or reduce the activity of a polypeptide that converts pyruvate into acetaldehyde, a polypeptide that converts lactate into pyruvate, a polypeptide that converts DHAP into glycerol-3-phosphate, or a combination thereof compared to an unmodified yeast cell of the same type, and to increase the activity of a polypeptide that converts pyruvate into lactate. The Saccharomyces cerevisiae cell may be as described above compared to an unmodified yeast cell of the same type. Such modifications are described in greater detail with respect to other embodiments.
According to another embodiment, provided is a method of preparing lactate, the method including culturing an acid-resistant yeast cell described herein to obtain cultured products; and retrieving lactate from the cultured products.
The culturing may be performed in a culture medium including a carbon source, for example, glucose. The culture medium used for culturing the yeast cells may be any general medium that is suitable for growth of host cells, such as a minimum or composite medium including suitable supplements. The suitable medium may be a commercially available medium or may be prepared according to a method known in the art.
The culture medium may be a medium that satisfies requirements of a specific yeast cell. The medium may be a medium selected from the group consisting of a carbon source, a nitrogen source, a salt, a trace element, and a combination thereof. The pH of a fermented solution may be maintained at about 2 to about 7.
The yeast cell may be cultured by a continuous method, a semi-continuous method, a batch-wise method, or a combination method thereof.
Culturing conditions of genetically manipulated yeast cells may be suitably adjusted to obtain lactate. The cells may be cultured under an aerobic or anaerobic condition. For example, the cells may be cultured under an aerobic condition to proliferate the same and then cultured under an anaerobic condition to produce lactate. The anaerobic condition may include a microaerobic condition in which a concentration of dissolved oxygen (DO) is about 0% to about 10%, for example, about 0% to about 8%, about 0% to about 6%, about 0% to about 4%, or about 0% to about 2%.
The term “culturing condition” refers to a condition for culturing yeast cells. The culturing condition may be, for example, a carbon source, a nitrogen source, or an oxygen condition used by the yeast cells. A carbon source that is usable for the yeast cells include monosaccharides, disaccharides, and polysaccharides. In more detail, glucose, fructose, mannose, or galactose may be used. The nitrogen source usable for the yeast cells may be organic nitrogen compounds or inorganic nitrogen compounds. The nitrogen source may be amino acids, amides, amines, nitrates, or ammonium salts. Oxygen conditions for culturing the yeast cells include an aerobic condition at a normal oxygen partial pressure, a low oxygen condition including about 0.1% to about 10% of oxygen or an anaerobic condition free of oxygen. A metabolic pathway may be modified according to a usable carbon source or nitrogen source of the yeast cells.
Separation of lactate from cultured products may be any general method known in the art. The method may be centrifugation, filtration, ion exchange chromatography, or crystallization. For example, the cultured products may be centrifuged at a low speed to remove biomass and separate a supernatant solution obtained therefrom through the ion exchange chromatography.
One or more embodiments of the present invention will now be described in further detail with reference to the following Examples. However, these examples are for the illustrative purposes only and are not intended to limit the scope of the invention.
Example 1
Preparation of a Strain and an Expression Vector for Highly Efficient Production of Lactate
Saccharomyces cerevisiae CEN.PK2-1D (MATα ura3-52; trp1-289; leu2-3,112; his3 Δ 1; MAL2-8C; SUC2, EUROSCARF accession number: 30000B) was used as a lactate producing strain. To block a production pathway for ethanol and glycerol, which are main by-products, a gene coding for a pyruvate decarboxylase (pdc1), which is a main enzyme for alcohol fermentation, a gene coding for an NAD-dependent glycerol-3-phosphate dehydrogenase (gpd1), which is a main enzyme for glycerol biosynthesis, and a gene coding for an L-lactate cytochrome-c oxidoreductase2 (cyb2), which is a lactate lyase, were inactivated through a homologous recombination.
(1.1) Preparation of L-Ldh Over-Expression Vector and an Inactivating Vector for pdc1, gpd1, and cyb2 Genes
(1.1.1) Preparation of an L-Ldh Over-Expression Vector
For over-expression of L-Ldh, genomic DNA of Saccharomyces cerevisiae CEN.PK2-1D was used as a template and PCR fragments of a CCW12 promoter obtained through PCR by using primers for SEQ ID NO: 18 and 19 were excised by using SacI and XbaI, and excised fragments were inserted into a p416-GPD, which was a GPD promoter excised with SacI and XbaI, to prepare p416-CCW12p.
Thereafter, genomic DNA of L-ldh (SEQ ID NO: 7) derived from Pelodiscus sinensis japonicas was used as a template and primers for SEQ ID NO: 20 and 21 were used to perform PCR, and then PCR fragments obtained therefrom and p416-CCW12p were excised by using BamHI and SalI and then ligated to prepare p416-CCW12p-LDH, which was an L-ldh expression vector.
Also, the L-ldh expression vector includes a self-replicating sequence of yeast/yeast centromeric sequence of SEQ ID NO: 12, a CYC promoter of SEQ ID NO: 13, a GPD promoter of SEQ ID NO: 15, and a CYC1 terminator of SEQ ID NO: 17, and a polynucleotide coding for an L-ldh of SEQ ID NO: 7 derived from Pelodiscus sinensis japonicas. 
FIG. 1 is a view showing a p416-CCW12p-LDH vector. As shown in FIG. 1, the vector includes a gene for coding Ldh derived from Pelodiscus sinensis japonicas integrated therein.
(1.1.2) Preparation of a Gene Exchange Vector
While deleting genes coding for Pdc1, Cyb2, and Gpd1 by homologous recombination, a gene exchange vector was prepared as below to insert an L-ldh gene thereto. FIG. 2 is a view showing a pUC57-ura3HA (Genetics 116: 541-545, August, 1987). FIG. 3 is a view showing a pUC57-CCW12p-LDH-ura3HA vector.
p416-CCW12p-LDH was used as a template, PCR was performed by using primers having SEQ ID NO: 22 and 23, and PCR fragments and a pUC57-ura3HA vector obtained therefrom were excised by using SacI, which were then ligated to prepare pUC57-CCW12p-LDH-ura3HA.
The pUC57-CCW12p-LDH-ura3HA obtained above was used as a template, and primers of SEQ ID NO: 24 and 25 were used to perform PCR to prepare a pdc1 gene deletion cassette.
The pUC57-CCW12p-LDH-ura3HA was used as a template, and primers of SEQ ID NO: 26 and 27 were used to perform PCR to prepare a cyb2 gene deletion cassette.
The pUC57-CCW12p-LDH-ura3HA was used as a template, and primers of SEQ ID NO: 28 and 29 were used to perform PCR to prepare a gpd1 gene deletion cassette.
(1.2) Inactivation of Pdc1, Gpd1, and Cyb2 Genes
A variant strain in which a gene coding for Pdc1 was deleted from Saccharomyces cerevisiae CEN.PK2-1D was prepared as follows: Saccharomyces cerevisiae CEN.PK2-1D was smeared on YPD (10 g of yeast extract, 20 g of peptone, and 20 g of glucose) solid medium to culture the same for about 24 hours at a temperature of about 30° C., and the colony was inoculated in about 10 ml of a YPD liquid medium to culture for about 18 hours at a temperature of about 30° C. A sufficiently grown culture medium was inoculated at 1% (v/v) in 50 ml of a YPD liquid medium in a 250 ml flask to culture the same at a speed of about 230 rpm and at a temperature of about 30° C. in an incubator. After about 4 hours to about 5 hours, when OD600 reached about 0.5, cultured cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells and then resuspended in a lithium acetate solution having a concentration of about 100 mM. Thereafter, the cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells, resuspended in a lithium acetate solution having a concentration of about 1M including about 15% glycerol, and then the cells were divided into about 100 μl.
To remove pdc1 gene, the pdc1 gene deletion cassette manufactured in Example 1.1.2 was mixed with 50% polyethylene glycol and single stranded carrier DNA, which were reacted in a water bath at a temperature of about 42° C. for about 1 hour and then the culture medium obtained therefrom was smeared and cultured in a uracil-free minimum solid medium (YSD, 6.7 g/L of yeast nitrogen base without amino acids and 1.4 g/L of Amino acid dropout mix (−ura)) at a temperature of about 30° C. for 24 hours or more. 10 colonies selected from colonies (variant strains) formed on the plate were moved again to a uracil-free minimum solid medium while culturing the colonies in a liquid medium having the same composition to separate genomic DNA from the strain by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). The separated variant genomic DNA was used as a template to perform PCR by using primers of SEQ ID NO: 30 and 31 and confirm deletion of pdc1 gene, and PCR products obtained therefrom were subjected to electrophoresis to confirm pdc1 gene deletion. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh+ura3) was obtained.
Also, for deletion of an additional gene by using the gene deletion vector, an URA3 gene, which was a selection marker for a pdc1 gene deletion cassette that was integrated to prepare a CEN.PK2-1D (Δ pdc1::ldh+ura3) strain, was removed as follows: Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1+ldh) was inoculated in about 10 ml of a YPD liquid medium to culture the same for about 18 hours at a temperature of about 30° C., then smeared on 5-FOA (YSD, 6.7 g/L of yeast nitrogen base without amino acids, 1.4 g/L of Amino acid dropout mix, and 1 μg/L of 5-Fluoroorotic Acid) solid medium to culture the same at a temperature of about 30° C. for 24 hours or more. 10 colonies formed on the plate (URA3 pop-out strains) were selected and then moved to a 5-FOA solid medium while culturing the same in a YPD liquid medium to separate a genomic DNA from the strain by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). PCR was performed by using genomic DNA of the URA3 pop-out strain as a template and primers of SEQ ID NO: 30 and 31 to confirm deletion of URA3, and PCR products obtained therefrom were subjected to electrophoresis to confirm the deletion of URA3. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh) was obtained.
A variant strain in which a gene for coding Cyb2 in Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh) was deleted was prepared as follows: The Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh) was smeared on a YPD (10 g of yeast extract, 20 g of peptone, and 20 g of glucose) solid medium and cultured for about 24 hours at a temperature of about 30° C., and a colony obtained therefrom was inoculated in about 10 ml of a YPD liquid medium for about 18 hours at a temperature of about 30° C. A sufficiently grown culture medium was inoculated at 1% (v/v) in 50 ml of a YPD liquid medium in a 250 ml flask to culture the same at a speed of about 230 rpm and at a temperature of about 30° C. in an incubator. After about 4 hours to about 5 hours, when OD600 reached about 0.5, cultured cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells, which were resuspended in a lithium acetate solution having a concentration of about 100 mM. Thereafter, the cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells, and resuspended in a lithium acetate solution having a concentration of about 1 M including about 15% glycerol, and then the cells were divided into about 100 ul.
To remove cyb2 gene, the same method as used in the deletion of pdc1 gene was used. The cyb2 gene deletion cassette manufactured in Example 1.1.2 was mixed with 50% polyethylene glycol and single stranded carrier DNA, which were reacted in a water bath at a temperature of about 42° C. for about 1 hour, and then the culture medium obtained therefrom was smeared and cultured in a uracil-free minimum solid medium (YSD, 6.7 g/L of yeast nitrogen base without amino acids, 1.4 g/L of Amino acid dropout mix (−ura)) at a temperature of about 30° C. for 24 hours or more. 10 colonies selected from colonies (variant strains) formed on the plate were moved again to a uracil-free minimum solid medium while culturing the colonies in a liquid medium having the same composition to separate genomic DNA by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). The separated variant genomic DNA was used as a template, and PCR was performed by using primers of SEQ ID NO: 32 and 33 to confirm deletion of cyb2 gene, and PCR products obtained therefrom were subjected to electrophoresis to confirm cyb2 gene deletion. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh+ura3) was obtained.
Also, for deletion of an additional gene by using the gene deletion vector, a URA3 gene, which was a selection marker for a cyb2 gene, was removed by using a URA3 pop-out method. Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh+ura3) was inoculated in about 10 ml of a YPD liquid medium to culture the same for about 18 hours at a temperature of about 30° C., and then smeared on a 5-FOA (YSD, 6.7 g/L of yeast nitrogen base without amino acids, 1.4 g/L of Amino acid dropout mix, and 1 μg/L of 5-Fluoroorotic Acid) solid medium to culture the same at a temperature of about 30° C. for 24 hours or more. 10 colonies formed on the plate (a URA3 pop-out strain) were selected and then moved to a 5-FOA solid medium while culturing the same in a YPD liquid medium to separate a genomic DNA from the strain by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). PCR was performed by using genomic DNA of the URA3 pop-out strain as a template and primers of SEQ ID NO: 32 and 33 to confirm deletion of URA3, and PCR products obtained therefrom were subjected to electrophoresis to confirm the deletion of URA3. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh) was obtained.
A variant strain in which a gene coding for Gpd1 in Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh) was deleted was prepared as follows: The Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh) was smeared on a YPD (10 g of yeast extract, 20 g of peptone, and 20 g of glucose) solid medium, cultured for about 24 hours at a temperature of about 30° C., and a colony obtained therefrom was inoculated in about 10 ml of a YPD liquid medium for about 18 hours at a temperature of about 30° C. A sufficiently grown culture medium was inoculated at 1% (v/v) in 50 ml of a YPD liquid medium in a 250 ml flask to culture the same at a speed of about 230 rpm and at a temperature of about 30° C. in an incubator. After about 4 hours to about 5 hours, when OD600 reached about 0.5, cultured cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells and then resuspended in a lithium acetate solution having a concentration of about 100 mM. Thereafter, the cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve the cells, resuspended in a lithium acetate solution having a concentration of about 1M including about 15% glycerol, and divided into about 100 μl.
To remove a gpd1 gene, the same method as used in the deletion of pdc1 gene and cyb2 was used. The gpd1 gene deletion cassette manufactured in Example 1.1.2 was mixed with 50% polyethylene glycol and single stranded carrier DNA, which was reacted in a water bath at a temperature of about 42° C. for about 1 hour, and then the culture medium was smeared and cultured in a uracil-free minimum solid medium (YSD, 6.7 g/L of yeast nitrogen base without amino acids, 1.4 g/L of Amino acid dropout mix (−ura)) at a temperature of about 30° C. for 24 hours or more. 10 colonies selected from colonies (variant strains) formed on the plate were moved again to a uracil-free minimum solid medium while culturing the colonies in a liquid medium having the same composition to separate genomic DNA by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). The separated variant genomic DNA was used as a template, and PCR was performed by using primers of SEQ ID NO: 34 and 35 to confirm deletion of gpd1 gene, and PCR products obtained therefrom were subjected to electrophoresis to confirm gpd1 gene deletion. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh+ura3) was obtained.
Also, for deletion of an additional gene by using the gene deletion vector, a URA3 gene, which was a selection marker for a gpd1 gene deletion, was removed by using a URA3 pop-out method described above. Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh+ura3) was inoculated in about 10 ml of a YPD liquid medium to culture the same for about 18 hours at a temperature of about 30° C., then smeared on a 5-FOA (YSD, 6.7 g/L of yeast nitrogen base without amino acids, 1.4 g/L of Amino acid dropout mix, and 1 μg/L of 5-Fluoroorotic Acid) solid medium to culture the same at a temperature of about 30° C. for 24 hours or more. 10 colonies formed on the plate (a URA3 pop-out strain) were selected and then moved to a 5-FOA solid medium while culturing the same in a YPD liquid medium to separate a genomic DNA from the strain by using a commercial kit (Gentra Puregene Cell kit, Qiagen, USA). PCR was performed by using genomic DNA of the URA3 pop-out strain as a template and primers of SEQ ID NO: 34 and 35 to confirm deletion of URA3, and PCR products obtained therefrom were subjected to electrophoresis to confirm the deletion of URA3. As a result, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) was obtained.
Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) was deposited and accepted in Korean Collector for Type Culture (KCTC), Biological Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 181 Ipsin-gil, Jeongeup-si, Jeollabuk-do 56212, Korea on May 30, 2013 and received an accession number of KCTC 12415BP.
Example 2
Preparation of a Mutant Strain Due to Chemical Mutation
To prepare a mutant strain of Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) (accession number: KCTC 12415BP) prepared in Example 1, mutation was induced thereto by using EMS and the process was performed as follows.
A cell concentration in 50 ml of a Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) culture medium was concentrated from an amount in which an optical density (OD) thereof reached 10 from 0.5 in about 600 nm until the OD by using a spectrophotometer, such that a colony obtained therefrom included about 1×108 cells. From the concentrated culture medium obtained therefrom, 1 ml of the culture medium was moved to a 15 ml tube. The 15 ml tube was centrifuged and a supernatant obtained therefrom was discarded, and was washed with 5 ml of distilled water. Thereafter, a supernatant solution obtained therefrom was discarded and 1.7 ml of the culture medium was resuspended in 0.1 M sodium phosphate buffer at pH 7. 50 μl of about 3% (v/v) ethyl methane sulfonate (Sigma, M08880, Liquid) was treated for about 15 minutes to about 90 minutes at an interval of 15 minutes in a 50 μl sterilized glass test tube. The culture medium obtained therefrom was inoculated in a roller shaker.
Example 3
Selection of Mutant Strain Cells
Thereafter, the following processes were performed to retrieve cells in which mutation was induced by ethyl methane sulfonate. Selection of mutants was performed under lactic acid stress condition, i.e., on a plate at pH about 3.1. Under the plate of pH about 3.1, the parent cell of the mutant strain, i.e., Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) (accession number: KCTC 12415BP) did not produce colonies.
At an interval of about 15 minutes, 8 ml of 5% sterilized sodium thiosulfate (NaS2O3) was added to stop a mutation inducing reaction. In more detail, tubes were prepared to add the sterilized sodium thiosulfate to each tube. Thereafter, the tubes were washed with 9 ml of distilled water. Cells obtained therefrom were diluted to 10−4, and then 100-200 colony/0.1 mL was smeared on the plate to measure a cell survival rate. The point at which the cell survival rate was about 10% from about 60-70% was viewed as a mutation induction point due to ethyl methane sulfonate, and the cells at this about 10% point were retrieved and selected.
1000 μl of a supernatant solution including selected cells was smeared on 10 ml of a YPD (10 g of yeast extract, 20 g of peptone, and 20 g of glucose) solid medium, cultured for about 18 hours at a temperature of about 30° C., and the colony obtained therefrom was inoculated in 10 ml of a YPD liquid medium to culture the same for about 18 hours at a temperature of about 30° C. A sufficiently grown culture medium was inoculated at 1% (v/v) in 50 ml of a YPD liquid medium in a 250 ml flask to culture the same at a speed of about 230 rpm and at a temperature of about 30° C. in an incubator. After about 4 hours to about 5 hours, when OD600 reached about 0.5, cultured cells were centrifuged at a speed of about 4,500 rpm for about 10 minutes to retrieve Saccharomyces cerevisiae cells, which were diluted with sterilized water and then smeared on a solid medium. Cells obtained therefrom were diluted to 10−3 and then smeared about 500 ̃1000 colony/0.1 mL on the plate.
Example 4
Growth Analysis of Selected Lactic Acid Resistant Yeast Cells
A strain selected in Example 3 was cultured under an aerobic condition. Culture conditions were as follows: In a 250 ml flask, 50 ml of a lactic acid medium (pH 3.2) including 2% glucose, 4% lactic acid, 1% yeast extract, and 2% Bacto-peptone were cultured under an aerobic condition at a speed of 230 rpm and at a temperature of about 30° C. An OD value of initial cells was about 0.1. Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) cells were used as a control group.
OD values of the two samples were measured by using a 600 nm spectrophotometer (DU730, Beckman Coulter) for first 64 hours and consumption amounts of lactic acid and sugar were measured by high performance liquid chromatography (HPLC) (Alliance 2695, Waters). Results obtained therefrom are shown as an average value of the two samples.
FIG. 4 is a graph showing cell growth of 5 selected strains of lactic acid resistant yeast cells and control group cells. As shown in FIG. 4, 5 types of variant strains having excellent cell growth compared to the control group were obtained. 5 types of the variant strains showed a cell growth rate that is about 1.6 times to about 12.5 times as great as the cell growth rate of the control group.
Example 5
Analysis of Yield of Selected Lactic Acid Resistant Yeast Cells
The 5 types of strains selected in Example 3 were cultured under an anaerobic condition for about 48 hours. Culturing conditions were as follows: In a 250 ml flask, 50 ml of a lactic acid medium (pH 3.2) including 5.5% glucose, 4% lactic acid, 1% yeast extract, and 2% Bacto-peptone were cultured under an anaerobic condition at a speed of 230 rpm and at a temperature of 30° C. The OD value of initial cells was about 0.5. As a control group, Saccharomyces cerevisiae CEN.PK2-1D (Δ pdc1::ldh Δ cyb2::ldh Δ gpd1::ldh) cells were used.
FIG. 5 is a graph showing lactic acid yield of 5 selected strains of lactic acid resistant yeast cells and control group cells. As shown in FIG. 5 and Table 1, 5 types of variant strains having excellent lactic acid production compared to the control group were obtained. The 5 types of variant strains have amounts of lactic acid production that are about 1.9 times to about 3.8 times as great as that of the control group and yield rate of lactic acid that is about 1.4 times to about 13.4 times as great as that of the control group.











TABLE 1







Amount of sugar
Lactic
Lactic acid




consumption
acid
yield rate


Strain
O.D
(g/L)
(g/L)
(%, g/g)



















Control group
7.8 ± 0.1
31 ± 2.4
2.8 ± 0.5
9.03


Experimental
9.7 ± 0 
55 ± 0 
 11 ± 0.2
20.00


group 1


Experimental
9.7 ± 0.3
54 ± 1.2
9.8 ± 0 
18.15


group 2


Experimental
7.6 ± 0.5
38 ± 1.7
5.1 ± 0.2
13.42


group 3


Experimental
8.4 ± 0.2
44 ± 1 
5.8 ± 0.5
13.18


group 4


Experimental
9.1 ± 0 
43 ± 0.6
5.2 ± 0.1
12.93


group 5









The mutant strain of Saccharomyces cerevisiae CEN.PK2-1D prepared in Experimental group 1 among Experimental groups 1 to 5 in Examples 4 and 5 was deposited in Korean Collection for Type Culture (KCTC) on Dec. 16, 2013 and received an accession number of KCTC 12532BP.
It should be understood that the exemplary embodiments described therein should be considered in a descriptive sense only and not for purposes of limitation. Descriptions of features or aspects within each embodiment should typically be considered as available for other similar features or aspects in other embodiments.
While one or more embodiments of the present invention have been described with reference to the figures, it will be understood by those of ordinary skill in the art that various changes in form and details may be made therein without departing from the spirit and scope of the present invention as defined by the following claims.
All references, including publications, patent applications, and patents, cited herein are hereby incorporated by reference to the same extent as if each reference were individually and specifically indicated to be incorporated by reference and were set forth in its entirety herein.
The use of the terms “a” and “an” and “the” and “at least one” and similar referents in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. The use of the term “at least one” followed by a list of one or more items (for example, “at least one of A and B”) is to be construed to mean one item selected from the listed items (A or B) or any combination of two or more of the listed items (A and B), unless otherwise indicated herein or clearly contradicted by context. The terms “comprising,” “having,” “including,” and “containing” are to be construed as open-ended terms (i.e., meaning “including, but not limited to,”) unless otherwise noted. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., “such as”) provided herein, is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention unless otherwise claimed. No language in the specification should be construed as indicating any non-claimed element as essential to the practice of the invention.
Preferred embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Variations of those preferred embodiments may become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventors expect skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than as specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.

## Claims

1. A genetically modified Saccharomyces cerevisiae cell that produces lactate and has increased resistance to an acid having a pH range of 2.0 to 5.0 compared to a wild-type Saccharomyces cerevisiae cell, wherein the genetically modified Saccharomyces cerevisiae cell is the strain deposited under accession number Korean Collector for Type Culture (KCTC) 12532BP.

2. The genetically modified Saccharomyces cerevisiae cell according to claim 1, wherein the genetically modified Saccharomyces cerevisiae cell has increased lactate production capacity compared to the wild-type Saccharomyces cerevisiae.

3. A method of producing lactate, the method comprising:
culturing the genetically modified Saccharomyces cerevisiae cell according to claim 1 in a culture medium to produce lactate; and
retrieving the lactate from the culture medium.

4. The method of producing lactate according to claim 3, wherein the genetically modified Saccharomyces cerevisiae cell has increased lactate production capacity compared to a wild-type Saccharomyces cerevisiae.