# Patent

## Title
Rho kinase inhibitors and methods of use

## Abstract

The subject invention concerns materials and methods for treating diseases and disorders associated with expression of Rho associated kinases (ROCKs). Examples of diseases and disorders contemplated within the scope of the invention include, but are not limited to, oncological disorders, cardiovascular diseases, CNS disorders, and inflammatory disorders. In one embodiment, a method of the invention comprises administering a therapeutically effective amount of one or more compounds of the present invention, or a composition comprising the compounds, to a person or animal in need of treatment. The subject invention also concerns compounds that inhibit ROCKs, and compositions that comprise the inhibitor compounds of the invention. Compounds contemplated within the scope of the invention include, but are not limited to, those compounds shown in Table 5.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
The present application is the National Stage of International Application Number PCT/US2012/031575, filed Mar. 30, 2012, which claims the benefit of U.S. Provisional Application Serial No. 61/469,482, filed Mar. 30, 2011, which is hereby incorporated by reference herein in its entirety, including any figures, tables, nucleic acid sequences, amino acid sequences, or drawings.


GOVERNMENT SUPPORT
This invention was made with government support under grant number CA067771 awarded by the National Institutes of Health. The government has certain rights in the invention.


BACKGROUND OF THE INVENTION
Rho associated protein kinases (ROCKs) are Ser/Thr protein kinases, activated by small GTPases of the Rho family that act as molecular switches to mediate cell signaling. The Rho/ROCK signaling pathway (Lu et al. 2009) is known to participate in the regulation of numerous cellular functions such as actin cytoskeleton organization, contraction, cell adhesion, motility, and morphology, proliferation, cytokinesis, gene expression, and angiogenesis.
Rho kinases are important drug targets involved in several therapeutic areas including cardiovascular diseases (Shimokawa et al. (2007); Xing et al. (2006); Liao et al. (2007); Shimokawa et al. (2005); Dong et al. (2009); Hu et al. (2005)), CNS disorders (Kubo et al. (2008); Kubo et al. (2007)), inflammation (LoGrasso et al. (2009)), and cancer (Suwa et al. (1998); Kamai et al. (2004); Schmitz et al. (2000); Imamura et al. (2000); Somlyo et al. (2000); Uchida et al. (2000); Itoh et al. (1999); Uehata et al. (1997); Ishizaki et al. (2000); Narumiya et al. (2000); Nakajima et al. (2003a); Nakajima et al. (2003b); Ying et al. (2006); Somlyo et al. (2003); Hampson et al. (2009); Igishi et al. (2003); Liu et al. (2009); Ogata et al. (2009); Zohrabian et al. (2009); Micuda et al. (2010)). Rho kinases and the effects of ROCK inhibitors upon several hallmarks of cancer, including invasion (Imamura et al. (2000); Somlyo et al. (2000)), metastasis (Itoh et al. (1999); Belgiovine et al. (2010)), proliferation and angiogenesis (Uchida et al. (2000); Nakabayashi et al. (2011); Yin et al. (2007)) have been reported.
Co-overexpression of Rho and ROCK proteins in cancer cells has been reported in ovarian cancer, pancreatic, testicular, and bladder cancer (Suwa et al. (1998); Kamai et al. (2004)). The Rho/ROCK pathway plays an important role in the development and progression of cancer by modulating the changes (required for malignant transformation and for the process of metastasis) in the migratory, invasive and adhesive properties of tumor cells, and changes in the regulation cellular processes depending on the proper assembly/disassembly of actin-cytoskeleton (Schmitz et al. (2000)). The involvement of the Rho/ROCK signalling pathway in tumor cell invasion, angiogenesis, and metastasis has been well documented. In light of these findings inhibition of ROCKs has been proposed as a promising strategy in the prevention of cell invasion, a central event in the process of metastasis (Itoh et al. (1999); Uehata et al. (1997); Ishizaki et al. (2000); Narumiya et al. (2000)).
The potential of ROCK inhibitors as anticancer drugs was demonstrated by the identification of ATP competitive inhibitors, Y27632, and Wf536 (FIG. 1) (Itoh et al. (1999); Nakajima et al. (2003a); Nakajima et al. (2003b); Somlyo et al. (2003)), displaying high inhibitory potency for ROCKs. Specifically, Y27632 was reported to reduce metastasis in animal model systems (Itoh et al. (1999)), while Wf-536 has shown efficacy in preventing tumor metastasis in vivo models by inhibiting tumor-induced angiogenesis as well as tumor motility (Nakajima et al. (2003a); Nakajima et al. (2003b); Somlyo et al. (2003)). Han and coworkers have also investigated the ability of Fasudil, currently the only ROCK inhibitor clinically approved (in Japan for the treatment of cerebral vasospasm) to inhibit tumor progression in human and rat tumor models (Ying et al. (2006)).
BRIEF SUMMARY OF THE INVENTION
The subject invention concerns materials and methods for treating diseases and disorders associated with expression of Rho associated kinases (ROCKs). Examples of diseases and disorders contemplated within the scope of the invention include, but are not limited to, oncological disorders, cardiovascular diseases, CNS disorders, and inflammatory disorders. In one embodiment, a method of the invention comprises administering a therapeutically effective amount of one or more compounds of the present invention, or a composition comprising the compounds, to a person or animal in need of treatment.
The subject invention also concerns compounds that inhibit ROCKs, and compositions that comprise the inhibitor compounds of the invention. Compounds contemplated within the scope of the invention include, but are not limited to, those compounds shown in Table 5.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows the ROCK inhibitors Wf536, Y27632, and Fasudil.
FIG. 2 shows the structure of the compound NSC 135784 (1aa).
FIG. 3 shows the structure of the compound H-1152P.
FIG. 4 shows the structure of the compound CID5056270.
FIG. 5 shows activity of ROCK inhibitors of the invention.
FIGS. 6a-6c: Molecular mode of action of compound 18. (FIG. 6a) Surface presentation of the ROCK1 dimer in complex with RPM1510 determined by X-ray crystallography at 3.25 Å resolution. Exploded view detailing the binding interactions of RPM1510 (yellow) within the ATP site; the hinge and DFG regions are indicated in orange and cyan, respectively. Displayed in blue is the 2Fo-Fc electron density, contoured at 1a around the inhibitor. (FIG. 6b) Schematic presentation of the binding interactions between RPM1510 and the ATP site. (FIG. 6c) The mFo-Fc electron density map (red) contoured at 3σ around the inhibitor after RPM1510 was omitted during refinement. Potential hydrogen bonding and van der Waal interactions are shown as black and green dotted lines, respectively.



DETAILED DESCRIPTION OF THE INVENTION
The subject invention concerns materials and methods for treating diseases and disorders associated with expression of Rho associated kinases (ROCKs). Examples of diseases and disorders contemplated within the scope of the invention include, but are not limited to, oncological disorders, cardiovascular diseases, CNS disorders, and inflammatory disorders. In one embodiment, a method of the invention comprises administering a therapeutically effective amount of one or more compounds of the present invention, or a composition comprising the compounds, to a person or animal in need of treatment.
The subject invention also concerns compounds that inhibit ROCKs, and compositions that comprise the inhibitor compounds of the invention. Compounds contemplated within the scope of the invention include, but are not limited to, those compounds shown in Table 5. In one embodiment, a compound of the invention has the structure shown in formula I:




    R1 is H, OH, S-alkyl, SO2NR2R3, NO2, CONH2, SO2-alkyl, NHC(O)-alkyl, CO2H, alkyl, cycloalkyl, alkoxy, cycloalkoxl, heterocycloalkyl, alkoxycarbonyl, heteroaryl, aryl aryloxy or a halogen;
    R2 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
    R3 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
    any of which of R1, R2, and R3 can be optionally substituted with one or more of halogen, alkyl, alkoxy, or aryl optionally substituted with alkoxy;
    or a pharmaceutically acceptable salt or hydrate thereof.


Compounds of formula I can comprise one or more R substituents.
In one embodiment, a compound of the invention has the structure of formula I wherein:







TABLE 1





R1 can be:













 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 

























wherein

    R10 is H, NO2, halogen, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
    or a pharmaceutically acceptable salt or hydrate thereof.






wherein

    R10 is H, NO2, halogen, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
    R20 is —CH3, —CO2H, heteroalkyl, aryl, or alkyl;
    or a pharmaceutically acceptable salt or hydrate thereof.






wherein

    R10 is H, NO2, halogen, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
    or a pharmaceutically acceptable salt or hydrate thereof.


Compounds of Formula IIa, IIb, III, and IV can comprise one or more R10 and/or R20.
In one embodiment, a compound of the invention has the structure shown in formula IIa, formula IIb, formula III, or formula IV wherein:







TABLE 2





R10 can be:













 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 








 





















As used herein, alkyl means straight or branched chain, saturated or mono- or polyunsaturated hydrocarbon groups having from 1 to 20 carbon atoms and C1-X alkyl means straight or branched chain alkyl groups containing from one up to X carbon atoms. For example, C1-6 alkyl means straight or branched chain alkyl groups containing from one up to 6 carbon atoms. Alkoxy means an alkyl-O— group in which the alkyl group is as previously described. Cycloalkyl includes a nonaromatic monocyclic or multicyclic ring system, including fused and spiro rings, of from about three to about 10 carbon atoms. A cyclic alkyl may optionally be partially unsaturated. Cycloalkoxy means a cycloalkyl-O— group in which cycloalkyl is as defined herein. Aryl means an aromatic monocyclic or multicyclic carbocyclic ring system, including fused and spiro rings, containing from about six to about 14 carbon atoms. Aryloxy means an aryl-O— group in which the aryl group is as described herein. Alkylcarbonyl means a RC(O)— group where R is an alkyl group as previously described. Alkoxycarbonyl means an ROC(O)— group where R is an alkyl group as previously described. Cycloalkylcarbonyl means an RC(O)— group where R is a cycloalkyl group as previously described. Cycloalkoxycarbonyl means an ROC(O)— group where R is a cycloalkyl group as previously described.
Heteroalkyl means a straight or branched-chain having from one to 20 carbon atoms and one or more heteroatoms selected from nitrogen, oxygen, or sulphur, wherein the nitrogen and sulphur atoms may optionally be oxidized, i.e., in the form of an N-oxide or an S-oxide. Heterocycloalkyl means a monocyclic or multicyclic ring system (which may be saturated or partially unsaturated), including fused and spiro rings, of about five to about 10 elements wherein one or more of the elements in the ring system is an element other than carbon and is selected from nitrogen, oxygen, silicon, or sulphur atoms. Heteroaryl means a five to about a 14-membered aromatic monocyclic or multicyclic hydrocarbon ring system, including fused and spiro rings, in which one or more of the elements in the ring system is an element other than carbon and is selected from nitrogen, oxygen, silicon, or sulphur and wherein an N atom may be in the form of an N-oxide. Arylcarbonyl means an aryl-CO— group in which the aryl group is as described herein. Heteroarylcarbonyl means a heteroaryl-CO— group in which the heteroaryl group is as described herein and heterocycloalkylcarbonyl means a heterocycloalkyl-CO— group in which the heterocycloalkyl group is as described herein. Aryloxycarbonyl means an ROC(O)— group where R is an aryl group as previously described. Heteroaryloxycarbonyl means an ROC(O)— group where R is a heteroaryl group as previously described. Heteroaryloxy means a heteroaryl-O— group in which the heteroaryl group is as previously described. Heterocycloalkoxy means a heterocycloalkyl-O— group in which the heterocycloalkyl group is as previously described. Heterocycloalkoxycarbonyl means an ROC(O)— group where R is a heterocycloalkyl group as previously described.
Examples of saturated alkyl groups include, but are not limited to, methyl, ethyl, N-propyl, isopropyl, N-butyl, tert-butyl, isobutyl, sec-butyl, N-pentyl, N-hexyl, N-heptyl, and N-octyl. An unsaturated alkyl group is one having one or more double or triple bonds. Unsaturated alkyl groups include, for example, ethenyl, propenyl, butenyl, hexenyl, vinyl, 2-propynyl, 2-isopentenyl, 2-butadienyl, ethynyl, 1-propynyl, 3-propynyl, and 3-butynyl. Cycloalkyl groups include, for example, cyclopentyl, cyclohexyl, 1-cyclohexenyl, 3-cyclohexenyl, and cycloheptyl. Heterocycloalkyl groups include, for example, 1-piperidinyl, 2-piperidinyl, 3-piperidinyl, 3-morpholinyl, 4-morpholinyl, tetrahydrofuran-2-yl, tetrahydrofuran-3-yl, tetrahydrothien-2-yl, tetrahydrothien-3-yl, 1-piperazinyl, 2-piperazinyl, and 1,4-diazabicyclooctane. Aryl groups include, for example, phenyl, indenyl, biphenyl, 1-naphthyl, 2-naphthyl, anthracenyl, and phenanthracenyl. Heteroaryl groups include, for example, 1-pyrrolyl, 2-pyrrolyl, 3-pyrrolyl, furyl, thienyl, imidazolyl, oxazolyl, thiazolyl, pyrazolyl, pyridyl, indolyl, quinolinyl, isoquinolinyl, benzoquinolinyl, carbazolyl, and diazaphenanthrenyl.
As used herein, halogen means the elements fluorine (F), chlorine (Cl), Bromine (Br), and iodine (I).
Compounds of the subject invention also include physiologically-acceptable salts and hydrates of the subject compounds. Physiologically-acceptable salts include salts of the compounds of the invention which are prepared with acids or bases, depending on the particular substituents found on the subject complexes described herein. Examples of physiologically-acceptable base addition salts include sodium, potassium, calcium, ammonium, or magnesium salt. Examples of physiologically-acceptable acid addition salts include hydrochloric, hydrobromic, nitric, phosphoric, carbonic, sulphuric, and organic acids like acetic, propionic, benzoic, succinic, fumaric, mandelic, oxalic, citric, tartaric, maleic, and the like. Physiologically-acceptable salts of compounds of the invention can be prepared using conventional techniques.
It will be appreciated by those skilled in the art that certain of the compounds of the invention may contain one or more asymmetrically substituted carbon atoms which can give rise to stereoisomers. It is understood that the invention extends to all such stereoisomers, including enantiomers, and diastereoisomers and mixtures, including racemic mixtures thereof.
The subject invention also concerns methods for treating a person or animal having a disorder or condition associated with aberrant or excessive ROCK activity or expression in a cell. In one embodiment, the disorder or condition is an oncological disorder or condition. In another embodiment, the disorder or condition is a cardiovascular-related disorder or condition. Examples of cardiovascular disorders and conditions that can be treated using the compounds and/or compositions of the invention include, but are not limited to, cerebral and coronary vasospasm, angina, hypertension, pulmonary hypertension, arteriosclerosis, ischemia/reperfusion injury, restenosis, stroke, and heart failure. In a further embodiment, the disorder or condition is a central nervous system (CNS) disorder or condition. Examples of CNS disorders and conditions that can be treated using the compounds and/or compositions of the invention include, but are not limited to, spinal cord injury, stroke, and Alzheimer's disease (AD). In one embodiment, a person or animal in need of treatment is administered an effective amount of one or more inhibitor compounds or compositions of this invention. In a specific embodiment, the compound is the compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer. In one embodiment, compounds and compositions of the invention can be used in the methods of treatment in combination with other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and/or CID5056270.
The subject invention also concerns methods of inhibiting migratory or invasive capacity of a cell, or inhibiting metastatic potential of a cell. In one embodiment, a cell is contacted with an effective amount of one or more inhibitor compounds or compositions of this invention. In a specific embodiment, the compound is the compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer. Cells can be any animal cell, such as a mammalian cell. Cells can be any mammalian cell, such as a human cell, canine cell, feline cell, or equine cell. In one embodiment the cell is a tumor cell, a cancer cell or a transformed cell. In one embodiment, compounds and compositions of the invention can be used in combination with other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and/or CID5056270.
The subject invention also concerns methods for inhibiting ROCK activity in a cell. In one embodiment, a cell is contacted with an effective amount of one or more inhibitor compounds or compositions of this invention. In a specific embodiment, the compound is the compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer. Cells can be any animal cell, such as a mammalian cell. Cells can be any mammalian cell, such as a human cell, canine cell, feline cell, or equine cell. In one embodiment the cell is a tumor cell, a cancer cell or a transformed cell. In one embodiment, compounds and compositions of the invention can be used in combination with other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and/or CID5056270.
The subject invention also concerns a packaged dosage formulation comprising in one or more containers at least one inhibitor compound or composition of the invention. In one embodiment, a packaged dosage formulation comprises a compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer. A packaged dosage formulation can optionally comprise in one or more containers a pharmaceutically acceptable carrier or diluent. A packaged dosage formulation can also optionally comprise, in addition to an inhibitor compound or composition of the invention, other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and/or CID5056270.
In vivo application of the subject compounds, and compositions containing them, can be accomplished by any suitable method and technique presently or prospectively known to those skilled in the art. The subject compounds can be formulated in a physiologically- or pharmaceutically-acceptable form and administered by any suitable route known in the art including, for example, oral, nasal, rectal, and parenteral routes of administration. As used herein, the term parenteral includes subcutaneous, intradermal, intravenous, intramuscular, intraperitoneal, and intrasternal administration, such as by injection. Administration of the subject compounds of the invention can be a single administration, or at continuous or distinct intervals as can be readily determined by a person skilled in the art.
The compounds of the subject invention, and compositions comprising them, can also be administered utilizing liposome technology, slow release capsules, implantable pumps, and biodegradable containers. These delivery methods can, advantageously, provide a uniform dosage over an extended period of time. The compounds of the invention can also be administered in their salt derivative forms or crystalline forms.
Compounds of the subject invention can be formulated according to known methods for preparing physiologically acceptable compositions. Formulations are described in detail in a number of sources which are well known and readily available to those skilled in the art. For example, Remington's Pharmaceutical Science by E. W. Martin describes formulations which can be used in connection with the subject invention. In general, the compositions of the subject invention will be formulated such that an effective amount of the compound is combined with a suitable carrier in order to facilitate effective administration of the composition. The compositions used in the present methods can also be in a variety of forms. These include, for example, solid, semi-solid, and liquid dosage forms, such as tablets, pills, powders, liquid solutions or suspension, suppositories, injectable and infusible solutions, and sprays. The preferred form depends on the intended mode of administration and therapeutic application. The compositions also preferably include conventional physiologically-acceptable carriers and diluents which are known to those skilled in the art. Examples of carriers or diluents for use with the subject compounds include ethanol, dimethyl sulfoxide, glycerol, alumina, starch, saline, and equivalent carriers and diluents. To provide for the administration of such dosages for the desired therapeutic treatment, compositions of the invention will advantageously comprise between about 0.1% and 99%, and especially, 1 and 15% by weight of the total of one or more of the subject compounds based on the weight of the total composition including carrier or diluent.
Compounds of the invention, and compositions comprising them, can be delivered to a cell either through direct contact with the cell or via a carrier means. Carrier means for delivering compounds and compositions to cells are known in the art and include, for example, encapsulating the composition in a liposome moiety. Another means for delivery of compounds and compositions of the invention to a cell comprises attaching the compounds to a protein or nucleic acid that is targeted for delivery to the target cell. U.S. Pat. No. 6,960,648 and Published U.S. Patent Application Nos. 20030032594 and 20020120100 disclose amino acid sequences that can be coupled to another composition and that allows the composition to be translocated across biological membranes. Published U.S. Patent Application No. 20020035243 also describes compositions for transporting biological moieties across cell membranes for intracellular delivery. Compounds can also be incorporated into polymers, examples of which include poly (D-L lactide-co-glycolide) polymer for intracranial tumors; poly[bis(p-carboxyphenoxy) propane:sebacic acid] in a 20:80 molar ratio (as used in GLIADEL); chondroitin; chitin; and chitosan.
The subject invention also concerns methods for treating oncological disorders in a patient. In one embodiment, an effective amount of one or more compounds or compositions of the present invention is administered to a patient having an oncological disorder and who is in need of treatment thereof. Methods of the invention can optionally include identifying a patient who is or may be in need of treatment of an oncological disorder. The patient can be a human or other mammal, such as a primate (monkey, chimpanzee, ape, etc.), dog, cat, cow, pig, or horse, or other animals having an oncological disorder. Means for administering and formulating compounds for administration to a patient are known in the art, examples of which are described herein. Oncological disorders within the scope of the invention include, but are not limited to, cancer and/or tumors of the anus, bile duct, bladder, bone, bone marrow, bowel (including colon and rectum), breast, eye, gall bladder, kidney, mouth, larynx, esophagus, stomach, testis, cervix, head, neck, ovary, lung, mesothelioma, neuroendocrine, penis, skin, spinal cord, thyroid, vagina, vulva, uterus, liver, muscle, pancreas, prostate, blood cells (including lymphocytes and other immune system cells), and brain. Specific cancers contemplated for treatment with the present invention include carcinomas, Karposi's sarcoma, melanoma, mesothelioma, soft tissue sarcoma, pancreatic cancer, lung cancer, leukemia (acute lymphoblastic, acute myeloid, chronic lymphocytic, chronic myeloid, and other), and lymphoma (Hodgkin's and non-Hodgkin's), and multiple myeloma.
Examples of cancers that can be treated according to the present invention are listed in Table 3.







TABLE 3





Examples of Cancer Types
















Acute Lymphoblastic Leukemia, Adult
Hairy Cell Leukemia


Acute Lymphoblastic Leukemia,
Head and Neck Cancer


Childhood
Hepatocellular (Liver) Cancer, Adult


Acute Myeloid Leukemia, Adult
(Primary)


Acute Myeloid Leukemia, Childhood
Hepatocellular (Liver) Cancer, Childhood


Adrenocortical Carcinoma
(Primary)


Adrenocortical Carcinoma, Childhood
Hodgkin's Lymphoma, Adult


AIDS-Related Cancers
Hodgkin's Lymphoma, Childhood


AIDS-Related Lymphoma
Hodgkin's Lymphoma During Pregnancy


Anal Cancer
Hypopharyngeal Cancer


Astrocytoma, Childhood Cerebellar
Hypothalamic and Visual Pathway Glioma,


Astrocytoma, Childhood Cerebral
Childhood


Basal Cell Carcinoma
Intraocular Melanoma


Bile Duct Cancer, Extrahepatic
Islet Cell Carcinoma (Endocrine Pancreas)


Bladder Cancer
Kaposi's Sarcoma


Bladder Cancer, Childhood
Kidney (Renal Cell) Cancer


Bone Cancer, Osteosarcoma/Malignant
Kidney Cancer, Childhood


Fibrous Histiocytoma
Laryngeal Cancer


Brain Stem Glioma, Childhood
Laryngeal Cancer, Childhood


Brain Tumor, Adult
Leukemia, Acute Lymphoblastic, Adult


Brain Tumor, Brain Stem Glioma,
Leukemia, Acute Lymphoblastic, Childhood


Childhood
Leukemia, Acute Myeloid, Adult


Brain Tumor, Cerebellar Astrocytoma,
Leukemia, Acute Myeloid, Childhood


Childhood
Leukemia, Chronic Lymphocytic


Brain Tumor, Cerebral
Leukemia, Chronic Myelogenous


Astrocytoma/Malignant Glioma,
Leukemia, Hairy Cell


Childhood
Lip and Oral Cavity Cancer


Brain Tumor, Ependymoma, Childhood
Liver Cancer, Adult (Primary)


Brain Tumor, Medulloblastoma,
Liver Cancer, Childhood (Primary)


Childhood
Lung Cancer, Non-Small Cell


Brain Tumor, Supratentorial Primitive
Lung Cancer, Small Cell


Neuroectodermal Tumors, Childhood
Lymphoma, AIDS-Related


Brain Tumor, Visual Pathway and
Lymphoma, Burkitt's


Hypothalamic Glioma, Childhood
Lymphoma, Cutaneous T-Cell, see Mycosis


Brain Tumor, Childhood
Fungoides and Sézary Syndrome


Breast Cancer
Lymphoma, Hodgkin's, Adult


Breast Cancer, Childhood
Lymphoma, Hodgkin's, Childhood


Breast Cancer, Male
Lymphoma, Hodgkin's During Pregnancy


Bronchial Adenomas/Carcinoids,
Lymphoma, Non-Hodgkin's, Adult


Childhood
Lymphoma, Non-Hodgkin's, Childhood


Burkitt's Lymphoma
Lymphoma, Non-Hodgkin's During


Carcinoid Tumor, Childhood
Pregnancy


Carcinoid Tumor, Gastrointestinal
Lymphoma, Primary Central Nervous System


Carcinoma of Unknown Primary
Macroglobulinemia, Waldenström's


Central Nervous System Lymphoma,
Malignant Fibrous Histiocytoma of


Primary
Bone/Osteosarcoma


Cerebellar Astrocytoma, Childhood
Medulloblastoma, Childhood


Cerebral Astrocytoma/Malignant
Melanoma


Glioma, Childhood
Melanoma, Intraocular (Eye)


Cervical Cancer
Merkel Cell Carcinoma


Childhood Cancers
Mesothelioma, Adult Malignant


Chronic Lymphocytic Leukemia
Mesothelioma, Childhood


Chronic Myelogenous Leukemia
Metastatic Squamous Neck Cancer with


Chronic Myeloproliferative Disorders
Occult Primary


Colon Cancer
Multiple Endocrine Neoplasia Syndrome,


Colorectal Cancer, Childhood
Childhood


Cutaneous T-Cell Lymphoma, see
Multiple Myeloma/Plasma Cell Neoplasm


Mycosis Fungoides and Sézary
Mycosis Fungoides


Syndrome
Myelodysplastic Syndromes


Endometrial Cancer
Myelodysplastic/Myeloproliferative Diseases


Ependymoma, Childhood
Myelogenous Leukemia, Chronic


Esophageal Cancer
Myeloid Leukemia, Adult Acute


Esophageal Cancer, Childhood
Myeloid Leukemia, Childhood Acute


Ewing's Family of Tumors
Myeloma, Multiple


Extracranial Germ Cell Tumor,
Myeloproliferative Disorders, Chronic


Childhood
Nasal Cavity and Paranasal Sinus Cancer


Extragonadal Germ Cell Tumor
Nasopharyngeal Cancer


Extrahepatic Bile Duct Cancer
Nasopharyngeal Cancer, Childhood


Eye Cancer, Intraocular Melanoma
Neuroblastoma


Eye Cancer, Retinoblastoma
Non-Hodgkin's Lymphoma, Adult


Gallbladder Cancer
Non-Hodgkin's Lymphoma, Childhood


Gastric (Stomach) Cancer
Non-Hodgkin's Lymphoma During Pregnancy


Gastric (Stomach) Cancer, Childhood
Non-Small Cell Lung Cancer


Gastrointestinal Carcinoid Tumor
Oral Cancer, Childhood


Germ Cell Tumor, Extracranial,
Oral Cavity Cancer, Lip and


Childhood
Oropharyngeal Cancer


Germ Cell Tumor, Extragonadal
Osteosarcoma/Malignant Fibrous


Germ Cell Tumor, Ovarian
Histiocytoma of Bone


Gestational Trophoblastic Tumor
Ovarian Cancer, Childhood


Glioma, Adult
Ovarian Epithelial Cancer


Glioma, Childhood Brain Stem
Ovarian Germ Cell Tumor


Glioma, Childhood Cerebral
Ovarian Low Malignant Potential Tumor


Astrocytoma
Pancreatic Cancer


Glioma, Childhood Visual Pathway and
Pancreatic Cancer, Childhood


Hypothalamic
Pancreatic Cancer, Islet Cell


Skin Cancer (Melanoma)
Paranasal Sinus and Nasal Cavity Cancer


Skin Carcinoma, Merkel Cell
Parathyroid Cancer


Small Cell Lung Cancer
Penile Cancer


Small Intestine Cancer
Pheochromocytoma


Soft Tissue Sarcoma, Adult
Pineoblastoma and Supratentorial Primitive


Soft Tissue Sarcoma, Childhood
Neuroectodermal Tumors, Childhood


Squamous Cell Carcinoma, see Skin
Pituitary Tumor


Cancer (non-Melanoma)
Plasma Cell Neoplasm/Multiple Myeloma


Squamous Neck Cancer with Occult
Pleuropulmonary Blastoma


Primary, Metastatic
Pregnancy and Breast Cancer


Stomach (Gastric) Cancer
Pregnancy and Hodgkin's Lymphoma


Stomach (Gastric) Cancer, Childhood
Pregnancy and Non-Hodgkin's Lymphoma


Supratentorial Primitive
Primary Central Nervous System Lymphoma


Neuroectodermal Tumors, Childhood
Prostate Cancer


T-Cell Lymphoma, Cutaneous, see
Rectal Cancer


Mycosis Fungoides and Sézary
Renal Cell (Kidney) Cancer


Syndrome
Renal Cell (Kidney) Cancer, Childhood


Testicular Cancer
Renal Pelvis and Ureter, Transitional Cell


Thymoma, Childhood
Cancer


Thymoma and Thymic Carcinoma
Retinoblastoma


Thyroid Cancer
Rhabdomyosarcoma, Childhood


Thyroid Cancer, Childhood
Salivary Gland Cancer


Transitional Cell Cancer of the Renal
Salivary Gland Cancer, Childhood


Pelvis and Ureter
Sarcoma, Ewing's Family of Tumors


Trophoblastic Tumor, Gestational
Sarcoma, Kaposi's


Unknown Primary Site, Carcinoma of,
Sarcoma, Soft Tissue, Adult


Adult
Sarcoma, Soft Tissue, Childhood


Unknown Primary Site, Cancer of,
Sarcoma, Uterine


Childhood
Sezary Syndrome


Unusual Cancers of Childhood
Skin Cancer (non-Melanoma)


Ureter and Renal Pelvis, Transitional
Skin Cancer, Childhood


Cell Cancer


Urethral Cancer


Uterine Cancer, Endometrial


Uterine Sarcoma


Vaginal Cancer


Visual Pathway and Hypothalamic


Glioma, Childhood


Vulvar Cancer


Waldenström's Macroglobulinemia


Wilms' Tumor









For the treatment of oncological disorders, the compounds of this invention can be administered to a patient in need of treatment in combination with other antitumor or anticancer substances and/or with radiation and/or photodynamic therapy and/or with surgical treatment to remove a tumor. These other substances or treatments may be given at the same as or at different times from the compounds of this invention. For example, the compounds of the present invention can be used in combination with mitotic inhibitors such as taxol or vinblastine, alkylating agents such as cyclophosamide or ifosfamide, antimetabolites such as 5-fluorouracil or hydroxyurea, DNA intercalators such as adriamycin or bleomycin, topoisomerase inhibitors such as etoposide or camptothecin, antiangiogenic agents such as angiostatin, antiestrogens such as tamoxifen, and/or other anti-cancer drugs or antibodies, such as, for example, GLEEVEC (Novartis Pharmaceuticals Corporation) and HERCEPTIN (Genentech, Inc.), respectively. In one embodiment, compounds and compositions of the invention can be used in combination with other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and CID5056270.
Many tumors and cancers have viral genome present in the tumor or cancer cells. For example, Epstein-Barr Virus (EBV) is associated with a number of mammalian malignancies. The compounds of the subject invention can also be used alone or in combination with anticancer or antiviral agents, such as ganciclovir, azidothymidine (AZT), lamivudine (3TC), etc., to treat patients infected with a virus that can cause cellular transformation and/or to treat patients having a tumor or cancer that is associated with the presence of viral genome in the cells. The compounds of the subject invention can also be used in combination with viral based treatments of oncologic disease. For example, compounds of the invention can be used with mutant herpes simplex virus in the treatment of non-small cell lung cancer (Toyoizumi et al., 1999).
The methods of the present invention can be used with humans and other animals. The other animals contemplated within the scope of the invention include domesticated, agricultural, or zoo- or circus-maintained animals. Domesticated animals include, for example, dogs, cats, rabbits, ferrets, guinea pigs, hamsters, pigs, monkeys or other primates, and gerbils. Agricultural animals include, for example, horses, mules, donkeys, burros, cattle, cows, pigs, sheep, and alligators. Zoo- or circus-maintained animals include, for example, lions, tigers, bears, camels, giraffes, hippopotamuses, and rhinoceroses.
While inhibitor compounds or agents of the invention can be administered as isolated compounds or agents, these compounds can also be administered as part of a pharmaceutical composition. The subject invention thus further provides compositions comprising one or more compounds or agents in association with at least one pharmaceutically acceptable carrier. The pharmaceutical composition can be adapted for various routes of administration, such as enteral, parenteral, intravenous, intramuscular, topical, subcutaneous, and so forth. Administration can be continuous or at distinct intervals, as can be determined by a person of ordinary skill in the art.
The inhibitor compounds or agents of the invention can be formulated according to known methods for preparing pharmaceutically useful compositions. Formulations are described in a number of sources which are well known and readily available to those skilled in the art. For example, Remington's Pharmaceutical Science (Martin 1995) describes formulations which can be used in connection with the subject invention. Formulations suitable for administration include, for example, aqueous sterile injection solutions, which may contain antioxidants, buffers, bacteriostats, and solutes that render the formulation isotonic with the blood of the intended recipient; and aqueous and nonaqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze dried (lyophilized) condition requiring only the condition of the sterile liquid carrier, for example, water for injections, prior to use. Extemporaneous injection solutions and suspensions may be prepared from sterile powder, granules, tablets, etc. It should be understood that in addition to the ingredients particularly mentioned above, the compositions of the subject invention can include other agents conventional in the art having regard to the type of formulation in question.
The compounds and agents of the present invention include all hydrates and salts that can be prepared by those of skill in the art. Under conditions where the compounds and agents of the present invention are sufficiently basic or acidic to form stable nontoxic acid or base salts, administration of the compounds as salts may be appropriate. Examples of pharmaceutically acceptable salts are organic acid addition salts formed with acids that form a physiological acceptable anion, for example, tosylate, methanesulfonate, acetate, citrate, malonate, tartarate, succinate, benzoate, ascorbate, alpha-ketoglutarate, and alpha-glycerophosphate. Suitable inorganic salts may also be formed, including hydrochloride, sulfate, nitrate, bicarbonate, and carbonate salts.
Pharmaceutically acceptable salts of a compound or agent may be obtained using standard procedures well known in the art, for example, by reacting a sufficiently basic compound such as an amine with a suitable acid affording a physiologically acceptable anion. Alkali metal (for example, sodium, potassium or lithium) or alkaline earth metal (for example calcium) salts of carboxylic acids can also be made.
Therapeutic application of compounds and/or agents and compositions containing them can be accomplished by any suitable therapeutic method and technique presently or prospectively known to those skilled in the art. Further, compounds and agents of the invention have use as starting materials or intermediates for the preparation of other useful compounds and compositions.
Compounds and agents of the invention, and compositions thereof, may be locally administered at one or more anatomical sites, such as sites of unwanted cell growth (such as a tumor site or benign skin growth, e.g., injected or topically applied to the tumor or skin growth) or sites of fungal infection, optionally in combination with a pharmaceutically acceptable carrier such as an inert diluent. Compounds and agents of the invention, and compositions thereof, may be systemically administered, such as intravenously or orally, optionally in combination with a pharmaceutically acceptable carrier such as an inert diluent, or an assimilable edible carrier for oral delivery. They may be enclosed in hard or soft shell gelatin capsules, may be compressed into tablets, or may be incorporated directly with the food of the patient's diet. For oral therapeutic administration, the active compound may be combined with one or more excipients and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, aerosol sprays, and the like.
The tablets, troches, pills, capsules, and the like may also contain the following: binders such as gum tragacanth, acacia, corn starch or gelatin; excipients such as dicalcium phosphate; a disintegrating agent such as corn starch, potato starch, alginic acid and the like; a lubricant such as magnesium stearate; and a sweetening agent such as sucrose, fructose, lactose or aspartame or a flavoring agent such as peppermint, oil of wintergreen, or cherry flavoring may be added. When the unit dosage form is a capsule, it may contain, in addition to materials of the above type, a liquid carrier, such as a vegetable oil or a polyethylene glycol. Various other materials may be present as coatings or to otherwise modify the physical form of the solid unit dosage form. For instance, tablets, pills, or capsules may be coated with gelatin, wax, shellac, or sugar and the like. A syrup or elixir may contain the active compound, sucrose or fructose as a sweetening agent, methyl and propylparabens as preservatives, a dye and flavoring such as cherry or orange flavor. Of course, any material used in preparing any unit dosage form should be pharmaceutically acceptable and substantially non-toxic in the amounts employed. In addition, the active compound may be incorporated into sustained-release preparations and devices.
Compounds and agents and compositions of the invention, including pharmaceutically acceptable salts or analogs thereof, can be administered intravenously, intramuscularly, or intraperitoneally by infusion or injection. Solutions of the active agent or its salts can be prepared in water, optionally mixed with a nontoxic surfactant. Dispersions can also be prepared in glycerol, liquid polyethylene glycols, triacetin, and mixtures thereof and in oils. Under ordinary conditions of storage and use, these preparations can contain a preservative to prevent the growth of microorganisms.
The pharmaceutical dosage forms suitable for injection or infusion can include sterile aqueous solutions or dispersions or sterile powders comprising the active ingredient which are adapted for the extemporaneous preparation of sterile injectable or infusible solutions or dispersions, optionally encapsulated in liposomes. The ultimate dosage form should be sterile, fluid and stable under the conditions of manufacture and storage. The liquid carrier or vehicle can be a solvent or liquid dispersion medium comprising, for example, water, ethanol, a polyol (for example, glycerol, propylene glycol, liquid polyethylene glycols, and the like), vegetable oils, nontoxic glyceryl esters, and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the formation of liposomes, by the maintenance of the required particle size in the case of dispersions or by the use of surfactants. Optionally, the prevention of the action of microorganisms can be brought about by various other antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, buffers or sodium chloride. Prolonged absorption of the injectable compositions can be brought about by the inclusion of agents that delay absorption, for example, aluminum monostearate and gelatin.
Sterile injectable solutions are prepared by incorporating a compound and/or agent of the invention in the required amount in the appropriate solvent with various other ingredients enumerated above, as required, followed by filter sterilization. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and the freeze drying techniques, which yield a powder of the active ingredient plus any additional desired ingredient present in the previously sterile-filtered solutions.
For topical administration, compounds and agents of the invention may be applied in as a liquid or solid. However, it will generally be desirable to administer them topically to the skin as compositions, in combination with a dermatologically acceptable carrier, which may be a solid or a liquid. Compounds and agents and compositions of the subject invention can be applied topically to a subject's skin to reduce the size (and may include complete removal) of malignant or benign growths, or to treat an infection site. Compounds and agents of the invention can be applied directly to the growth or infection site. Preferably, the compounds and agents are applied to the growth or infection site in a formulation such as an ointment, cream, lotion, solution, tincture, or the like. Drug delivery systems for delivery of pharmacological substances to dermal lesions can also be used, such as that described in U.S. Pat. No. 5,167,649.
Useful solid carriers include finely divided solids such as talc, clay, microcrystalline cellulose, silica, alumina and the like. Useful liquid carriers include water, alcohols or glycols or water-alcohol/glycol blends, in which the compounds can be dissolved or dispersed at effective levels, optionally with the aid of non-toxic surfactants. Adjuvants such as fragrances and additional antimicrobial agents can be added to optimize the properties for a given use. The resultant liquid compositions can be applied from absorbent pads, used to impregnate bandages and other dressings, or sprayed onto the affected area using pump-type or aerosol sprayers, for example.
Thickeners such as synthetic polymers, fatty acids, fatty acid salts and esters, fatty alcohols, modified celluloses or modified mineral materials can also be employed with liquid carriers to form spreadable pastes, gels, ointments, soaps, and the like, for application directly to the skin of the user. Examples of useful dermatological compositions which can be used to deliver a compound to the skin are disclosed in U.S. Pat. Nos. 4,608,392; 4,992,478; 4,559,157; and 4,820,508.
Useful dosages of the compounds and agents and pharmaceutical compositions of the present invention can be determined by comparing their in vitro activity, and in vivo activity in animal models. Methods for the extrapolation of effective dosages in mice, and other animals, to humans are known to the art; for example, see U.S. Pat. No. 4,938,949.
The present invention also concerns pharmaceutical compositions comprising a compound and/or agent of the invention in combination with a pharmaceutically acceptable carrier. Pharmaceutical compositions adapted for oral, topical or parenteral administration, comprising an amount of a compound constitute a preferred embodiment of the invention. The dose administered to a patient, particularly a human, in the context of the present invention should be sufficient to achieve a therapeutic response in the patient over a reasonable time frame, without lethal toxicity, and preferably causing no more than an acceptable level of side effects or morbidity. One skilled in the art will recognize that dosage will depend upon a variety of factors including the condition (health) of the subject, the body weight of the subject, kind of concurrent treatment, if any, frequency of treatment, therapeutic ratio, as well as the severity and stage of the pathological condition.
For the treatment of oncological disorders, compounds and agents and compositions contemplated by the present invention can be administered to a patient in need of treatment prior to, subsequent to, or in combination with other antitumor or anticancer agents or substances (e.g., chemotherapeutic agents, immunotherapeutic agents, radiotherapeutic agents, cytotoxic agents, etc.) and/or with radiation therapy and/or with surgical treatment to remove a tumor. For example, compounds and agents and compositions of the present invention can be used in methods of treating cancer wherein the patient is to be treated or is or has been treated with mitotic inhibitors such as taxol or vinblastine, alkylating agents such as cyclophosamide or ifosfamide, antimetabolites such as 5-fluorouracil or hydroxyurea, DNA intercalators such as adriamycin or bleomycin, topoisomerase inhibitors such as etoposide or camptothecin, antiangiogenic agents such as angiostatin, antiestrogens such as tamoxifen, and/or other anti-cancer drugs or antibodies, such as, for example, GLEEVEC (Novartis Pharmaceuticals Corporation) and HERCEPTIN (Genentech, Inc.), respectively. These other substances or radiation treatments may be given at the same as or at different times from the compounds of this invention. Examples of other chemotherapeutic agents contemplated within the scope of the invention include, but are not limited to, altretamine, bleomycin, bortezomib (VELCADE), busulphan, calcium folinate, capecitabine, carboplatin, carmustine, chlorambucil, cisplatin, cladribine, crisantaspase, cyclophosphamide, cytarabine, dacarbazine, dactinomycin, daunorubicin, docetaxel, doxorubicin, epirubicin, etoposide, fludarabine, fluorouracil, gefitinib (IRESSA), gemcitabine, hydroxyurea, idarubicin, ifosfamide, imatinib (GLEEVEC), irinotecan, liposomal doxorubicin, lomustine, melphalan, mercaptopurine, methotrexate, mitomycin, mitoxantrone, oxaliplatin, paclitaxel, pentostatin, procarbazine, raltitrexed, streptozocin, tegafur-uracil, temozolomide, thiotepa, tioguanine/thioguanine, topotecan, treosulfan, vinblastine, vincristine, vindesine, vinorelbine. In an exemplified embodiment, the chemotherapeutic agent is melphalan. Examples of immunotherapeutic agents contemplated within the scope of the invention include, but are not limited to, alemtuzumab, cetuximab (ERBITUX), gemtuzumab, iodine 131 tositumomab, rituximab, trastuzamab (HERCEPTIN). Cytotoxic agents include, for example, radioactive isotopes (e.g., I131, I125, Y90, P32, etc.), and toxins of bacterial, fungal, plant, or animal origin (e.g., ricin, botulinum toxin, anthrax toxin, aflatoxin, jellyfish venoms (e.g., box jellyfish), etc.) The subject invention also concerns methods for treating an oncological disorder comprising administering an effective amount of a compound and/or agent of the invention prior to, subsequent to, and/or in combination with administration of a chemotherapeutic agent, an immunotherapeutic agent, a radiotherapeutic agent, or radiotherapy.
Examples of some chemotherapeutic agents that can be used according to the present invention are listed in Table 4.







TABLE 4





Examples of Chemotherapeutic Agents
















13-cis-Retinoic Acid
Mylocel


2-Amino-6-
Letrozole


Mercaptopurine
Neosar


2-CdA
Neulasta


2-Chlorodeoxyadenosine
Neumega


5-fluorouracil
Neupogen


5-FU
Nilandron


6-TG
Nilutamide


6-Thioguanine
Nitrogen Mustard


6-Mercaptopurine
Novaldex


6-MP
Novantrone


Accutane
Octreotide


Actinomycin-D
Octreotide acetate


Adriamycin
Oncospar


Adrucil
Oncovin


Agrylin
Ontak


Ala-Cort
Onxal


Aldesleukin
Oprevelkin


Alemtuzumab
Orapred


Alitretinoin
Orasone


Alkaban-AQ
Oxaliplatin


Alkeran
Paclitaxel


All-transretinoic acid
Pamidronate


Alpha interferon
Panretin


Altretamine
Paraplatin


Amethopterin
Pediapred


Amifostine
PEG Interferon


Aminoglutethimide
Pegaspargase


Anagrelide
Pegfilgrastim


Anandron
PEG-INTRON


Anastrozole
PEG-L-asparaginase


Arabinosylcytosine
Phenylalanine Mustard


Ara-C
Platinol


Aranesp
Platinol-AQ


Aredia
Prednisolone


Arimidex
Prednisone


Aromasin
Prelone


Arsenic trioxide
Procarbazine


Asparaginase
PROCRIT


ATRA
Proleukin


Avastin
Prolifeprospan 20 with Carmustine implant


BCG
Purinethol


BCNU
Raloxifene


Bevacizumab
Rheumatrex


Bexarotene
Rituxan


Bicalutamide
Rituximab


BiCNU
Roveron-A (interferon alfa-2a)


Blenoxane
Rubex


Bleomycin
Rubidomycin hydrochloride


Bortezomib
Sandostatin


Busulfan
Sandostatin LAR


Busulfex
Sargramostim


C225
Solu-Cortef


Calcium Leucovorin
Solu-Medrol


Campath
STI-571


Camptosar
Streptozocin


Camptothecin-11
Tamoxifen


Capecitabine
Targretin


Carac
Taxol


Carboplatin
Taxotere


Carmustine
Temodar


Carmustine wafer
Temozolomide


Casodex
Teniposide


CCNU
TESPA


CDDP
Thalidomide


CeeNU
Thalomid


Cerubidine
TheraCys


cetuximab
Thioguanine


Chlorambucil
Thioguanine Tabloid


Cisplatin
Thiophosphoamide


Citrovorum Factor
Thioplex


Cladribine
Thiotepa


Cortisone
TICE


Cosmegen
Toposar


CPT-11
Topotecan


Cyclophosphamide
Toremifene


Cytadren
Trastuzumab


Cytarabine
Tretinoin


Cytarabine liposomal
Trexall


Cytosar-U
Trisenox


Cytoxan
TSPA


Dacarbazine
VCR


Dactinomycin
Velban


Darbepoetin alfa
Velcade


Daunomycin
VePesid


Daunorubicin
Vesanoid


Daunorubicin
Viadur


hydrochloride
Vinblastine


Daunorubicin liposomal
Vinblastine Sulfate


DaunoXome
Vincasar Pfs


Decadron
Vincristine


Delta-Cortef
Vinorelbine


Deltasone
Vinorelbine tartrate


Denileukin diftitox
VLB


DepoCyt
VP-16


Dexamethasone
Vumon


Dexamethasone acetate
Xeloda


dexamethasone sodium
Zanosar


phosphate
Zevalin


Dexasone
Zinecard


Dexrazoxane
Zoladex


DHAD
Zoledronic acid


DIC
Zometa


Diodex
Gliadel wafer


Docetaxel
Glivec


Doxil
GM-CSF


Doxorubicin
Goserelin


Doxorubicin liposomal
granulocyte - colony stimulating factor


Droxia
Granulocyte macrophage colony stimulating


DTIC
factor


DTIC-Dome
Halotestin


Duralone
Herceptin


Efudex
Hexadrol


Eligard
Hexalen


Ellence
Hexamethylmelamine


Eloxatin
HMM


Elspar
Hycamtin


Emcyt
Hydrea


Epirubicin
Hydrocort Acetate


Epoctin alfa
Hydrocortisone


Erbitux
Hydrocortisone sodium phosphate


Erwinia L-asparaginase
Hydrocortisone sodium succinate


Estramustine
Hydrocortone phosphate


Ethyol
Hydroxyurea


Etopophos
Ibritumomab


Etoposide
Ibritumomab Tiuxetan


Etoposide phosphate
Idamycin


Eulexin
Idarubicin


Evista
Ifex


Exemestane
IFN-alpha


Fareston
Ifosfamide


Faslodex
IL-2


Femara
IL-11


Filgrastim
Imatinib mesylate


Floxuridine
Imidazole Carboxamide


Fludara
Interferon alfa


Fludarabine
Interferon Alfa-2b (PEG conjugate)


Fluoroplex
Interleukin-2


Fluorouracil
Interleukin-11


Fluorouracil (cream)
Intron A (interferon alfa-2b)


Fluoxymesterone
Leucovorin


Flutamide
Leukeran


Folinic Acid
Leukine


FUDR
Leuprolide


Fulvestrant
Leurocristine


G-CSF
Leustatin


Gefitinib
Liposomal Ara-C


Gemcitabine
Liquid Pred


Gemtuzumab ozogamicin
Lomustine


Gemzar
L-PAM


Gleevec
L-Sarcolysin


Lupron
Meticorten


Lupron Depot
Mitomycin


Matulane
Mitomycin-C


Maxidex
Mitoxantrone


Mechlorethamine
M-Prednisol


Mechlorethamine
MTC


Hydrochlorine
MTX


Medralone
Mustargen


Medrol
Mustine


Megace
Mutamycin


Megestrol
Myleran


Megestrol Acetate
Iressa


Melphalan
Irinotecan


Mercaptopurine
Isotretinoin


Mesna
Kidrolase


Mesnex
Lanacort


Methotrexate
L-asparaginase


Methotrexate Sodium
LCR


Methylprednisolone









The subject invention also concerns methods for inhibiting a ROCK protein in a cell by contacting the cell with an effective amount of a compound, agent, or composition of the invention. In one embodiment, the cell is a human or mammalian cell, and can be a cancer or tumor cell or other cell that exhibits abnormal proliferation, survival, migration or differentiation. In one embodiment, the cell constitutively expresses or expresses elevated or abnormal levels of a ROCK protein. In a specific embodiment, the compound is the compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer.
The subject invention also concerns methods for treating a person or animal having a disorder associated with constitutive, abnormal, or elevated expression of a ROCK protein in a cell, wherein a therapeutically effective amount of a compound, agent, or composition of the invention is administered to the person or animal. The disorder can be one characterized, for example, by abnormal cell proliferation, cell survival, cell migration, and/or cell differentiation. In a specific embodiment, the compound is the compound designated herein as 30b. In another embodiment, the compound is the compound designated herein as 30h. In a specific embodiment, the 30h compound is the (R) stereoisomer.
Depending upon the disorder or disease condition to be treated, a suitable dose(s) may be that amount that will reduce proliferation or growth of the target cell(s). In the context of cancer, a suitable dose(s) is that which will result in a concentration of the active agent in cancer tissue, such as a malignant tumor, which is known to achieve the desired response. The preferred dosage is the amount which results in maximum inhibition of cancer cell growth, without unmanageable side effects. Administration of a compound and/or agent can be continuous or at distinct intervals, as can be determined by a person of ordinary skill in the art.
To provide for the administration of such dosages for the desired therapeutic treatment, in some embodiments, pharmaceutical compositions of the invention can comprise between about 0.1% and 45%, and especially, 1 and 15%, by weight of the total of one or more of the compounds based on the weight of the total composition including carrier or diluents. Illustratively, dosage levels of the administered active ingredients can be: intravenous, 0.01 to about 20 mg/kg; intraperitoneal, 0.01 to about 100 mg/kg; subcutaneous, 0.01 to about 100 mg/kg; intramuscular, 0.01 to about 100 mg/kg; orally 0.01 to about 200 mg/kg, and preferably about 1 to 100 mg/kg; intranasal instillation, 0.01 to about 20 mg/kg; and aerosol, 0.01 to about 20 mg/kg of animal (body) weight.
The subject invention also concerns kits comprising a composition comprising an inhibitor compound and/or agent of the invention in one or more containers. Kits of the invention can optionally include pharmaceutically acceptable carriers and/or diluents. In one embodiment, a kit of the invention includes one or more other components, adjuncts, or adjuvants as described herein. In another embodiment, a kit includes one or more anti-cancer agents, such as those agents described herein. In one embodiment, a kit of the invention includes instructions or packaging materials that describe how to administer a compound or composition of the kit. Containers of the kit can be of any suitable material, e.g., glass, plastic, metal, etc., and of any suitable size, shape, or configuration. In one embodiment, a compound and/or agent of the invention is provided in the kit as a solid, such as a tablet, pill, or powder form. In another embodiment, a compound and/or agent of the invention is provided in the kit as a liquid or solution. In one embodiment, the kit comprises an ampoule or syringe containing a compound and/or agent of the invention in liquid or solution form. A kit of the invention can also optionally comprise, in addition to an inhibitor compound or composition of the invention, other ROCK inhibitors, including, but not limited to, Y27632, Wf536, Fasudil, H-1152P, and/or CID5056270.
Mammalian species which benefit from the disclosed methods include, but are not limited to, primates, such as apes, chimpanzees, orangutans, humans, monkeys; domesticated animals (e.g., pets) such as dogs, cats, guinea pigs, hamsters, Vietnamese pot-bellied pigs, rabbits, and ferrets; domesticated farm animals such as cows, buffalo, bison, horses, donkey, swine, sheep, and goats; exotic animals typically found in zoos, such as bear, lions, tigers, panthers, elephants, hippopotamus, rhinoceros, giraffes, antelopes, sloth, gazelles, zebras, wildebeests, prairie dogs, koala bears, kangaroo, opossums, raccoons, pandas, hyena, seals, sea lions, elephant seals, otters, porpoises, dolphins, and whales. Other species that may benefit from the disclosed methods include fish, amphibians, avians, and reptiles. As used herein, the terms “patient” and “subject” are used interchangeably and are intended to include such human and non-human species. Likewise, in vitro methods of the present invention can be carried out on cells of such human and non-human species.
The inventors have established a program to develop potent and selective ROCK1 inhibitors to provide in vitro and in vivo tools to probe the pharmacological inhibition of ROCK1 and to further establish its role in cancer and metastasis. The inventors undertook a screen of the NCI Diversity set using a Z-lyte FRET assay (Kang et al. (2009); Wu et al. (2010)) to measure kinase inhibition. NSC-135784 (de Suto-Nagy et al. (1941)) was identified as a weak inhibitor (IC50 92 μM). Active in only 1 screen from 127 assessed in the Molecular Libraries Screening Centers Network (MLSCN) (Huryn et al. (2007); Huryn (2009)), NSC-135784 appeared to be a good hit for library development and was synthesized to confirm the identity of the NCI sample and the ROCK inhibition [1aa (in house NSC-135784): ROCK1: IC50=38 μM; ROCK2: IC50=25 μM]. NSC-135784 was chosen as a starting point for the development of novel ROCK inhibitors.
Materials and Methods
Chemistry
The inventors prepared the hit 1aa following the synthetic routes depicted in Scheme 1 (EtOH, microwave heating, 120° C., 10 min). To establish a preliminary structure activity relationship the library of 4-anilino-2-aminopyrimidines 1 was rapidly synthesized via microwave-assisted reaction of anilines 2 with 4-chloropyrimidin-2-amine (3) (Scheme 1). The use of microwave-assisted heating was successfully applied to the synthesis of analogs 6-8 that possess different A-rings (Scheme 2). The nitrogen atom linking the two rings of NSC-135784 was replaced by an oxygen atom as shown in Scheme 3. This library of 4-(2-aminopyrimidyl) phenyl ethers 10 was prepared by reacting with 4-chloropyrimidin-2-amine (3) with commercially available phenols 9 (microwave heating, 165° C., 10 min).
The hit optimization process initially directed us towards the generation of a small library of indoline 13 and indoles 15 (Scheme 4, conditions b, c, d or c). The indoline building blocks 12 were either commercially available or prepared in-house via reduction of the corresponding commercially available indoles 11 (Scheme 4, conditions a). To further explore the structure activity relationships, additional analogs 16-18 were synthesized according to the route illustrated in Scheme 5.
The series of indoles 21 was prepared as illustrated in Scheme 6. The synthesis involves the alkylation of available phenols with benzyl halides 19 to afford the indole building blocks 20, which were subsequently reacted with 4-chloropyrimidin-2-amine (3) to afford the desired library 21. The synthesis of amide building blocks 23 was achieved via coupling of various commercially indole carboxylic acids with inexpensive and readily available amines 22 (benzylamines, anilines, and phenethylamines) using EDC as coupling reagent in presence of catalytic amount of DMAP (Scheme 6). These conditions were also successfully applied to the preparation of reverse-amide building blocks 26 and the alpha-substituted benzylamides 29 from 25 and 28 respectively. Alternatively, EDC/HOBt coupling reagents were utilized for the synthesis of the alpha-substituted benzylamides 29 (Scheme 6, condition c). Finally, microwave heating provided an efficient and convenient method for the rapid generation of the desired libraries 24, 27 and 30 (Scheme 6) using the same conditions described for library 21 (DMF, Cs2CO3, 150° C., microwave, 30 min). As seen in our preliminary SAR (compounds 6, 7, 8), one aspect of the SAR focused on the effect of the modifications of the 2-amino-pyrimidyl position on selected compounds of interest. The synthesis of N-phenylpyrimidine 33 was successfully carried out via microwave-assisted heating under acidic conditions (aq. 0.1 M HCl) (Scheme 7). The pyrrolo containing pyrimidine 35 was prepared as under the conditions described in Scheme 8. Treatment of 30b with acetic anhydride afforded the N-acyl derivative 36 (Scheme 9). Finally, reaction of 29a and 37 afforded the target compound 38.
The synthesis of analogs 46 and 47 is illustrated in Scheme 11 and 12. The synthesis of amide and sulfonamide building blocks 41 and 44 was achieved via coupling of commercially available para-nitrobenzoyl chloride and para-nitrosulfonyl chloride with 3-methoxybenzylamine 40 (Scheme 11). Tin chloride was utilized for the reduction of 41 and 44 to the corresponding aniline 42 and 45. Finally, microwave heating provided an efficient and convenient method for the rapid generation of 46 and 47 (Scheme 12) (EtOH, 150° C., microwave, 20 min).
The structures of all final compounds were confirmed by their spectroscopy data. In addition, HPLC methods were also developed to assess the purity (generally>96%) of the most potent compounds.





























































TABLE 5







Examples of compounds, structures and ROCK1&2 IC50 (μM)











ROCK1 % 





inhibition @ 50 μM 
ROCK1 
ROCK2


Compound ID, Structure, formula and MW
otherwise specified
IC50 (μM)
IC50 (μM)









60 ± 3 
38.5 ± 3.4 
25.5 ± 5.8 


 






1.8 ± 0.8
nd
nd


 






21 ± 10
nd
nd


 






2.8 ± 2.3
nd
nd


 






−0.3 ± 0.7 
nd
nd


 






47 ± 6 
55.3 ± 13.4
>50


 






90 ± 2 
6.1 ± 0.6
6.1 ± 1.1


 






82 ± 2 
13.3 ± 1.7 
11.5 ± 1.2 


 






  9 ± 1.5
nd
nd


 






2.1 ± 1.9
nd
nd


 






30 ± 1 
nd
nd


 






54 ± 4 
42.7 ± 0.9 
nd


 






9 ± 2
nd
nd


 






46 ± 4 
>100
nd


 






54 ± 4 
38.9 ± 0.9 
33.3 ± 2.8 


 






90 ± 1 
6.7 ± 1.3
7.3 ± 2.0


 






0.8 ± 1.2
nd
nd


 






42 ± 6 
nd
nd


 






10 ± 12
nd
nd


 






36 ± 5 
nd
nd


 






85 ± 4 
6.6 ± 0.5
3.4 ± 0.3


 






2 ± 1
nd
nd


 






2 ± 1
nd
nd


 






38 ± 1 
nd
nd


 






76 ± 2 
21.0 ± 8.8 
17.1 ± 2.8 


 






63 ± 5 
37.0 ± 8.8 
39.6 ± 6.2 


 






77 ± 3 
20.5 ± 8.0 
13.9 ± 1.7 


 






37 ± 1 
nd
nd


 






23 ± 1 
nd
nd


 






69 ± 1 
19.8 ± 4.3 
35.3 ± 5.1 


 






97 ± 1 
1.7 ± 0.2
1.9 ± 0.4


 






89 ± 2 
3.9 ± 0.3
3.7 ± 0.8


 






91 ± 2 
4.86 ± 0.6 
7.82 ± 2.3 


 






36 ± 6 
nd
nd


 






63 ± 5 
30.2 ± 2.5 
42.5 ± 6.7 


 






31 ± 4 
nd
nd


 






64 ± 7 
30.0 ± 3.2 
23.4 ± 5.5 


 






73 ± 3 
1.5 ± 0.2
1.2 ± 0.2


 






−0.5 ± 1 
nd
nd


 






−0.3 ± 1 
nd
nd


 






2 ± 1
nd
nd


 






−3 ± 1 
nd
nd


 






50 ± 1 
38.7 ± 1.6 
37.4 ± 4.0 


 






88 ± 4 
4.8 ± 0.3
4.0 ± 0.3


 






−1 ± 2 
nd
nd


 






6 ± 1
nd
nd


 






51 ± 1 
2.2 ± 0.3
1.8 ± 0.3


 






24 ± 2 
nd
nd


 






89 ± 7 
1.2 ± 0.2
0.7 ± 0.1


 






49 ± 4 
41.0 ± 2.3 
37.9 ± 2.0 


 






18 ± 1 
nd
nd


 






98 ± 2 
0.5 ± 0.1
0.4 ± 0.1


 






83 ± 5 
1.7 ± 0.3
1.2 ± 0.1


 






  6 ± 0.4
nd
nd


 






93 ± 2 
4.8 ± 0.5
2.6 ± 0.1


 






87 ± 10
1.2 ± 0.1
 0.5 ± 0.03


 






73 ± 4 
25.8 ± 2.6 
10.3 ± 0.9 


 






97 ± 4 
0.4 ± 0.1
 0.2 ± 0.01


 






89 ± 4 
3.7 ± 0.4
1.34 ± 0.09


 






86 ± 5 
4.9 ± 0.5
1.7 ± 0.1


 






89 ± 1 
2.1 ± 0.3
1.7 ± 0.3


 






 88 ± 0.3
1.2 ± 0.2
1.0 ± 0.3


 






88 ± 2 
4.9 ± 0.5
4.9 ± 1.0


 






80 ± 3 
0.8 ± 0.5
0.4 ± 0.1


 






96 ± 3 
0.4 ± 0.1
0.25 ± 0.13


 






82 ± 5 
8.3 ± 0.9
7.1 ± 2.1


 






89 ± 1 
4.9 ± 0.8
5.3 ± 1.2


 






9 ± 1
nd
nd


 






92 ± 1 
1.0 ± 0.5
0.2 ± 0.1


 






91 ± 1 
2.0 ± 0.5
0.5 ± 0.1


 






53 ± 1 
20.8 ± 6.3 
5.8 ± 1.4


 






8 ± 3
nd
nd


 






60 ± 2 
54.1 ± 1.1 
8.4 ± 2.0


 






96 ± 1 
2.8 ± 0.3
0.7 ± 0.3


 






96 ± 1 
2.4 ± 1.6
0.3 ± 0.1


 






17 ± 2 
nd
nd


 






90 ± 1 
 0.48 ± 0.099
0.25 ± 0.07


 






76 ± 2 
39.0 ± 6.9 
16.3 ± 5.5 


 






63 ± 5 
53.6 ± 4.1 
17.0 ± 1.7 


 






22 ± 4 
nd
nd


 






10 ± 2 
nd
nd


 






71 ± 2 
1.90 ± 0.42
0.46 ± 0.08


 






21 ± 14
nd
nd


 






44 ± 9 
34.6 ± 8.2 
32.7 ± 8.1 


 






62 ± 6 
29.1 ± 8.2 
19.0 ± 5.9 


 






−5 ± 2 
nd
nd


 






−5 ± 0.5
nd
nd


 






33 ± 4 
nd
nd


 






39.22 ± 4.19 
nd
nd


 






93 ± 7 
0.15 ± 0.02
0.04 ± 0.03


 






86 ± 4 
6.8 ± 3.0
0.72 ± 0.13


 






72 ± 10
 2.7 ± 1.78
0.26 ± 0.09


 






31 ± 10
nd
nd


 






70 ± 3 
10.5 ± 1.0 
1.10 ± 0.49


 






85 ± 6 
1.7 ± 0.5
0.21 ± 0.15


 






105 ± 1 
0.12 ± 0.02
0.06 ± 0.02


 






69 ± 3 
6.0 ± 2.0
1.80 ± 0.68


 






102.2 ± 0.2 
3.43 ± 0.44
1.20 ± 0.32


 






88.71 ± 5.96 
5.67 ± 0.32
0.92 ± 0.48


 






19.44 ± 13.73
nd
nd


 






ROCK1 % inhibition @ 100 μM 62 ± 12
13.03 ± 6.81 
nd


 






ROCK1 % inhibition @ 100 μM 100 ± 8 
3.26 ± 0.57
nd


 






ROCK1 % inhibition @ 100 μM 117 ± 3 
1.39 ± 0.26
nd


 






ROCK1 % inhibition @ 100 μM 122 ± 1 
1.77 ± 0.24
nd


 






ROCK1 % inhibition @ 100 μM 91 ± 9 
15.43 ± 6.04 
nd


 






ROCK1 % inhibition @ 100 μM 89 ± 6 
15.25 ± 3.74 
nd


 






ROCK1 % inhibition @ 100 μM  80 ± 0.5
15.42 ± 4.02 
nd


 






ROCK1 % inhibition @ 100 μM 86 ± 10
9.31 ± 8.68
nd


 






ROCK1 % inhibition @ 100 μM  61 ± 1.2
3.37 ± 0.53
nd


 






ROCK1 % inhibition @ 100 μM   7 ± 1.1
nd
nd


 






ROCK1 % inhibition @ 100 μM 47 ± 1 
40.33 ± 11.03
nd


 






ROCK1 % inhibition @ 100 μM 99 ± 7 
8.31 ± 7.39
nd


 






ROCK1 % inhibition @ 100 μM 97 ± 6 
7.30 ± 1.29
nd


 






ROCK1 % inhibition @ 100 μM 70 ± 4 
33.38 ± 8.52 
nd


 






ROCK1 % inhibition @ 100 μM  92 ± 1.3
0.213 ± 0.025
nd


 






ROCK1 % inhibition @ 100 μM 97 ± 1 
1.38 ± 0.63
nd


 






ROCK1 % inhibition @ 100 μM  39 ± 1.5
nd
nd


 






ROCK1 % inhibition @ 100 μM 89 ± 9 
5.71 ± 1.44
nd


 






1.26 ± 0.79
nd
nd


 






92.75 ± 3.64 
1.62 ± 0.86
0.25 ± 0.02


 






ROCK1 % inhibition @ 100 μM  88 ± 1.4
 9.76 ± 0.86′′
nd









EXPERIMENTAL PART




4-(2-Aminopyrimidin-4-ylamino)benzenesulfonamide hydrochloride 1aa. A mixture of 2-amino-4-chloropyrimidine (0.078 g, 0.602 mmol), 4-aminobenzenesulfonamide (0.103 g, 0.602 mmol) in anhydrous ethanol (0.6 ml) was stirred in a Biotage microwave reactor for 10 min at 120° C. After cooling to room temperature, the solid precipitate was filtered and dried under vacuum to afford 1aa (0.137 g, 0.516 mmol, 86%) as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.97 (d, J=9.0 Hz, 2H), 7.90 (d, J=8.9 Hz, 2H), 7.79 (d, J=7.2 Hz, 1H), 6.36 (d, J=7.2 Hz, 1H). HRMS (ESI+ve) calculated for C10H12N4O2S (M+H—Cl)+ 266.0706, found 266.0703.




4-(2-Aminopyrimidin-4-ylamino)-N-phenylbenzenesulfonamide hydrochloride (1al). This was prepared from 2-amino-4-chloropyrimidine (0.072 g, 0.556 mmol), and 4-amino-N-phenylbenzenesulfonamide (0.138 g, 0.556 mmol) in a similar manner as described for 1aa. After cooling to room temperature, the solid precipitate was filtered and dried under vacuum to afford 1al (0.071 g, 0.207 mmol, 37%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 12.45 (s, 1H), 11.08 (s, 1H), 10.28 (s, 1H), 7.97 (d, J=8.7 Hz, 2H), 7.89 (d, J=7.1 Hz, 1H), 7.70 (d, J=8.8 Hz, 2H), 7.21 (t, J=7.9 Hz, 2H), 7.08 (d, J=8.3 Hz, 2H), 7.00 (t, J=7.9 Hz, 1H), 6.41 (d, J=7.1 Hz, 1H). HRMS (ESI+ve) calculated for C16H17N5O2S (M+H—Cl)+ 342.1019, found 342.1039.




4-(7H-Purin-6-ylamino)benzenesulfonamide hydrochloride (8). A mixture of 6-chloro-7H-purine (0.286 g, 1.66 mmol), and 4-aminobenzenesulfonamide (0.257 g, 1.66 mmol) was stirred in a Biotage microwave reactor for 20 min at 120° C. and 10 min at 160° C. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, ether, further triturated with methanol, filtered and dried under vacuum. Pure 8 (0.434 g, 1.33 mmol, 80%) was obtained as a green solid. 1H NMR (400 MHz, CD3OD) δ 8.71 (s, 1H), 8.59 (s, 1H), 7.99 (s, 4H). HRMS (ESI+ve) calculated for C11H11N6O2S (M+H—Cl)+ 291.0658, found 291.0659.




4-(2-amino-7H-purin-6-ylamino)benzenesulfonamide hydrochloride (7). A mixture of 6-chloro-7H-purin-2-amine (0.143 g, 0.8444 mmol), and 4-aminobenzenesulfonamide (0.145 g, 0.843 mmol) was stirred in a Biotage microwave reactor for 20 min at 120° C. and 20 min at 160° C. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, ether, further and dried under vacuum. Pure 7 (0.186 g, 0.609 mmol, 72%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.30 (s, 1H), 8.12 (d, J=8.4 Hz, 2H), 8.08 (s, 1H), 7.79 (d, J=8.4 Hz, 2H), 7.31 (s, 2H), 6.73 (s, 2H). HRMS (ESI+ve) calculated for C11H12N7O2S (M+H—Cl)+ 306.0767, found 306.0779.




N4-phenylpyrimidine-2,4-diamine hydrochloride (1af). This was prepared from 2-amino-4-chloropyrimidine (0.084 g, 0.648 mmol), aniline (0.060 g, 0.648 mmol) in a similar manner as described for 1aa. After cooling to room temperature, the solvent was removed under reduced pressure. The remaining solid was solid triturated with ethyl acetate, filtered and dried under vacuum to afford 1af (0.136 g, 0.610 mmol, 94%) as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.71-7.69 (m, 3H), 7.39 (t, J=7.8 Hz, 2H), 7.20 (t, J=7.3 Hz, 1H), 6.30 (d, J=7.3 Hz, 1H). HRMS (ESI+ve) calculated for C10H11N4 (M+H—Cl)+ 187.0978, found 187.0979.




4-(2-aminopyrimidin-4-ylamino)benzamide hydrochloride (1ah). This was prepared from 2-amino-4-chloropyrimidine (0.096 g, 0.741 mmol), 4-aminobenzamide (0.100 g, 0.741 mmol) in a similar manner as described for 1aa. After cooling to room temperature, the solvent was removed under reduced pressure. The remaining solid was solid triturated with ethyl acetate, filtered and dried under vacuum to afford 1ah (0.161 g, 0.606 mmol, 82%) as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 12.30 (s, 1H), 10.90 (s, 1H), 7.95-7.85 (m, 6H), 7.33 (s, 1H), 6.39 (d, J=6.6 Hz, 1H). HRMS (ESI+ve) calculated for C11H12N5O (M+H—Cl)+ 230.1036, found 230.1041.




4-(2-aminopyrimidin-4-ylamino)-N-benzylbenzenesulfonamide hydrochloride (1ak). This was prepared from 2-amino-4-chloropyrimidine (0.076 g, 0.586 mmol), and 4-amino-N-benzylbenzenesulfonamide (0.153 g, 0.586 mmol) in a similar manner as described for 1aa. After cooling to room temperature, the solvent was removed under reduced pressure and the remaining solid was triturated with DCM, filtered and dried under vacuum. Pure 1ak (0.203 g, 0.518 mmol, 88%) was obtained as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.96 (d, J=8.5 Hz, 2H), 7.83-7.89 (m, 3H), 7.25-7.17 (m, 5H), 6.37 (dd, J=7.3, 1.2 Hz, 1H), 4.07 (s, 2H). HRMS (ESI+ve) calculated for C17H18N5O2S (M+H—Cl)+ 356.1175, found 356.1188.




3-(2-aminopyrimidin-4-ylamino)benzenesulfonamide hydrochloride (1ag). This was prepared from 2-amino-4-chloropyrimidine (0.077 g, 0.594 mmol), and 3-aminobenzenesulfonamide (0.102 g, 0.594 mmol) in a similar manner as described for 1aa. After cooling to room temperature, the solid precipitate was filtered, washed with methanol and dried under vacuum. Pure lag (0.159 g, 0.527 mmol, 89%) was obtained as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 8.41 (s, 1H), 7.88 (d, J=6.2 Hz, 1H), 7.77 (d, J=7.2 Hz, 1H), 7.72 (d, J=7.8 Hz, 1H), 7.57 (t, J=8.0 Hz, 1H), 6.35 (d, J=7.3 Hz, 1H). HRMS (ESI+ve) calculated for C10H12N5O2S (M+H—Cl)+ 266.0706, found 266.0718.




N-(4-(2-aminopyrimidin-4-ylamino)phenylsulfonyl)acetamide (1ai). This was prepared from 2-amino-4-chloropyrimidine (0.076 g, 0.586 mmol), and N-(4-aminophenylsulfonyl)acetamide (0.125 g, 0.586 mmol) in a similar manner as described for 1aa. After cooling to room temperature, DIPEA (0.2 ml) was added and the solvent was removed under reduced pressure. The remaining solid was triturated with water, filtered, washed with acetonitrile, and dried under vacuum. Pure 1ai (0.137 g, 0.445 mmol, 76%) was obtained as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 7.93 (d, J=9.0 Hz, 2H), 7.89 (d, J=9.2 Hz, 2H), 7.82 (d, J=7.5 Hz, 1H), 6.16 (d, J=6.2 Hz, 1H), 1.93 (s, 3H). HRMS (ESI+ve) calculated for C12H14N5O3S (M+H)+ 308.0811, found 308.0818.




N-(4-(2-aminopyrimidin-4-ylamino)phenylsulfonyl)benzamide (1aj). This was prepared from 2-amino-4-chloropyrimidine (0.082 g, 0.632 mmol), and N-(4-aminophenylsulfonyl)benzamide (0.174 g, 0.632 mmol) in a similar manner as described for 1aa. After cooling to room temperature, DIPEA (0.5 ml) was added and the solvent was removed under reduced pressure. The remaining solid was triturated with water, filtered, washed with acetonitrile, and dried under vacuum. Pure 1aj (0.145 g, 0.392 mmol, 62%) was obtained as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 10.07 (s, 1H), 7.85-7.81 (m, 7H), 7.46 (t, J=7.3 Hz, 1H), 7.36 (t, J=7.5 Hz, 2H), 7.14 (s, 2H), 6.16 (d, J=6.4 Hz, 1H). HRMS (ESI+ve) calculated for C17H16N5O3S (M+H)+ 370.0968, found 370.0979.




N-(4-(4-(3-(trifluoromethyl)phenyl)piperazin-1-ylsulfonyl)phenyl)pyrimidine-2,4-diamine hydrochloride (1ae). A mixture of 2-amino-4-chloropyrimidine (0.031 g, 0.241 mmol), 4-(4-(3-(trifluoromethyl)phenyl)piperazin-1-ylsulfonyl)aniline (0.093 g, 0.241 mmol) in anhydrous ethanol (0.4 ml) was stirred in a Biotage microwave reactor for 20 min at 150° C. After cooling to room temperature, the solid precipitate was filtered, washed with Et2O, and dried under vacuum to afford 1ae (0.050 g, 0.104 mmol, 43%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 11.06 (s, 1H), 8.08 (d, J=8.5 Hz, 1H), 7.91 (d, J=7.0 Hz, 1H), 7.73 (d, J=8.7 Hz, 1H), 7.39 (t, J=8.1 Hz, 1H), 7.18-7.13 (m, 2H), 7.08 (d, J=7.3 Hz, 1H), 6.41 (d, J=7.1 Hz, 1H), 3.00 (s, 4H). HRMS (ESI+ve) calculated for C21H22N6F3O2S (M+H—Cl)+ 479.1471, found 479.1474.




4-(2-aminopyrimidin-4-ylamino)-N-(1-phenyl-1H-pyrazol-5-yl)benzenesulfonamide (1ab). This was prepared from 2-amino-4-chloropyrimidine (0.093 g, 0.717 mmol), and 44-amino-N-(1-phenyl-1H-pyrazol-5-yl)benzenesulfonamide (0.255 g, 0.717 mmol) in a similar manner as described for 1ae. After cooling to room temperature, the solvent was removed under reduced pressure. The crude material was redissolved in MeOH, followed by the addition of DIPEA (0.3 ml). The solvent was removed under reduced pressure. The obtained solid was slurried with water, filtered, washed with acetone, ether, dried under vacuum, dried under vacuum. Pure lab was obtained as a white solid (0.093 g, 0.228 mmol, 31%). 1H NMR (400 MHz, CD3OD) δ 7.91 (d, J=8.6 Hz, 2H), 7.83-7.79 (m, 1H), 7.64 (d, J=8.7 Hz, 2H), 7.57 (dd, J=1.9, 0.6 Hz, 1H), 7.40 (dd, J=8.0, 3.1 Hz, 3H), 7.29-7.22 (m, 2H), 6.43-6.34 (m, 1H), 6.13 (dd, J=1.9, 0.6 Hz, 1H). HRMS (ESI+ve) calculated for C19H18N7O2S (M+H)+ 408.1237, found 408.1246.




4-(2-aminopyrimidin-4-ylamino)-N-(pyridin-2-yl)benzenesulfonamide hydrochloride (1ad). This was obtained as a white solid (0.052 g, 0.155 mmol, 20%) from 2-amino-4-chloropyrimidine (0.095 g, 0.733 mmol), and 4-amino-N-(pyridin-2-yl)benzenesulfonamide (0.183 g, 0.733 mmol) in a similar manner as described for 1ae. 1H NMR (400 MHz, CD3OD) δ 7.97-7.93 (m, 5H), 7.77 (d, J=7.2 Hz, 1H), 7.71-7.69 (m, 1H), 7.24 (d, J=8.7 Hz, 1H), 6.90-6.87 (m, 1H), 6.35 (d, J=7.3 Hz, 1H), HRMS (ESI+ve) calculated for C15H15N6O2S (M+H—Cl)+ 343.0971, found 343.0974.




4-(2-aminopyrimidin-4-ylamino)-N-(thiazol-2-yl)benzenesulfonamide hydrochloride (1ac). This was obtained as a white solid (0.208 g, 0.540 mmol, 67%) from 2-amino-4-chloropyrimidine (0.105 g, 0.810 mmol), and 4-amino-N-(thiazol-2-yl)benzenesulfonamide (0.206 g, 0.810 mmol) in a similar manner as described for 1ae. 1H NMR (400 MHz, CD3OD) δ 7.94-7.87 (m, 4H), 7.78 (d, J=7.2 Hz, 1H), 7.10 (d, J=4.7 Hz, 1H), 6.73 (d, J=4.7 Hz, 1H), 6.35 (d, J=7.3 Hz, 1H). HRMS (ESI+ve) calculated for C13H13N6O2S2 (M+H—Cl)+ 349.0535, found 349.0542.




3-(2-aminopyrimidin-4-ylamino)benzamide hydrochloride (1am. A mixture of 2-amino-4-chloropyrimidine (0.099 g, 0.764 mmol), 3-aminobenzamide (0.104 g, 0.764 mmol) in anhydrous ethanol (0.8 ml) was stirred in a Biotage microwave reactor for 15 min at 120° C. After cooling to room temperature, the solid precipitate was filtered, washed with MeOH, and dried under vacuum to afford 1am (0.137 g, 0.515 mmol, 67%) as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 8.44 (s, 1H), 7.76-7.74 (m, 2H), 7.68 (d, J=7.9 Hz, 1H), 7.48 (t, J=7.9 Hz, 1H), 6.32 (d, J=7.2 Hz, 1H). HRMS (ESI+ve) calculated for C11H12N5O (M+H—Cl)+ 230.1036, found 230.1037.




N-(3-(methylsulfonyl)phenyl)pyrimidine-2,4-diamine hydrochloride (1an). This was obtained as an off-white solid (0.162 g, 0.482 mmol, 54%) from of 2-amino-4-chloropyrimidine (0.166 g, 0.895 mmol), 3-(methylsulfonyl)aniline (0.185 g, 0.895 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with MeOH, and dried under vacuum to afford 1an. 1H NMR (400 MHz, CD3OD) δ 8.42 (s, 1H), 8.05 (d, J=8.8 Hz, 1H), 7.80-7.76 (m, 2H), 6.36 (d, J=7.2 Hz, 1H), 3.18 (s, 3H). HRMS (ESI+ve) calculated for C11H12N4O2S (M+H—Cl)+ 265.0753, found 265.0757.




N-(3-(2-aminopyrimidin-4-ylamino)phenyl)acetamide hydrochloride (1ao). This was obtained as a white solid (0.216 g, 0.771 mmol, 92%) from 2-amino-4-chloropyrimidine (0.106 g, 0.837 mmol), and N-(3-aminophenyl)acetamide (0.150 g, 1.00 mmol) in a similar manner as described for 1ae. After cooling to room temperature, the solid precipitate was filtered, washed with MeOH, and dried under vacuum to afford 1ao. 1H NMR (400 MHz, CD3OD) δ 8.10 (s, 1H), 7.70 (d, J=7.3 Hz, 1H), 7.48 (s, 1H), 7.32 (t, J=8.1 Hz, 1H), 7.21 (d, J=8.7 Hz, 1H), 6.30 (d, J=7.3 Hz, 1H), 2.14 (s, 3H). HRMS (ESI+ve) calculated for C12H14N5O (M+H—Cl)+ 244.1192, found 244.1198.




1-(6-(2-aminopyrimidin-4-ylamino)indolin-1-yl)ethanone hydrochloride (1ap). This was obtained as a white solid (0.130 g, 0.430 mmol, 57%) from 2-amino-4-chloropyrimidine (0.097 g, 0.748 mmol), and 1-(6-aminoindolin-1-yl)ethanone (0.131 g, 0.748 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with MeOH, and dried under vacuum to afford 1ap. 1H NMR (400 MHz, DMSO-d6) δ 12.19 (s, 1H), 10.57 (s, 1H), 8.03 (s, 1H), 7.80 (d, J=7.2 Hz, 1H), 7.20 (d, J=8.1 Hz, 1H), 6.27 (d, J=6.7 Hz, 1H), 4.10 (t, J=8.5 Hz, 2H), 3.11 (t, J=8.4 Hz, 2H), 2.15 (s, 3H). HRMS (ESI+ve) calculated for C14H15N5O (M+H—Cl)+ 270.1349, found 270.1357.




3-(2-aminopyrimidin-4-ylamino)-4-hydroxybenzenesulfonamide hydrochloride (1aq). This was obtained as a white solid (0.150 g, 0.472 mmol, 72%) from 2-amino-4-chloropyrimidine (0.085 g, 0.656 mmol), and 3-amino-4-hydroxybenzenesulfonamide (0.123 g, 656 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with MeOH, and dried under vacuum to afford 1aq. 1H NMR (400 MHz, DMSO-d6) δ 12.16 (s, 1H), 10.57 (s, 1H), 8.03 (s, 1H), 7.90 (bs, 2H), 7.80 (d, J=7.2 Hz, 2H), 7.21 (d, J=8.2 Hz, 1H), 6.27 (d, J=7.1 Hz, 1H), 4.10 (t, J=8.6 Hz, 1H), 3.11 (t, J=8.5 Hz, 1H), 2.15 (s, 1H). HRMS (ESI+ve) calculated for Co2H12N5O3S (M+H—Cl)+ 282.0655, found 282.0658.




4-(indolin-1-yl)pyrimidin-2-amine hydrochloride (13a). A mixture of 2-amino-4-chloropyrimidine (0.097 g g, 0.748 mmol), and indoline (0.098 g, 0.823 mmol) was stirred in a Biotage microwave reactor for 15 min at 120° C. and 10 min at 160° C. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, ether, further triturated with methanol, filtered and dried under vacuum (0.106 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with methanol, filtered and dried under vacuum (0.043 g). The two batches were combined to provide pure 13a (0.149 g, 0.587 mmol, 78%) as a pale yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.66 (m, 1H), 7.83 (d, J=7.5 Hz, 1H), 7.31 (d, J=7.4 Hz, 1H), 7.25 (d, J=7.9 Hz, 1H), 7.13 (t, J=7.4 Hz, 1H), 6.46 (s, 1H), 4.21 (t, J=8.3 Hz, 3H). HRMS (ESI+ve) calculated for C12H12N4 (M+H—Cl)+ 213.1134, found 213.1139.




N-(4-(2-aminopyrimidin-4-ylamino)-3-methoxyphenyl)acetamide hydrochloride (1ar). This was obtained from 2-amino-4-chloropyrimidine (0.087 g, 0.671 mmol), and N-(4-amino-3-methoxyphenyl)acetamide (0.121 g, 0.671 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, ether, further triturated with methanol, filtered and dried under vacuum (0.082 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with methanol, filtered and dried under vacuum (0.019 g). The two batches were combined to provide pure 1ar (0.101 g, 0.326 mmol, 49%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.18 (s, 1H), 7.69 (d, J=7.3 Hz, 1H), 7.30 (dd, J=2.5, 9.0 Hz, 1H), 7.04 (d, J=8.9 Hz, 1H), 6.37 (s, 1H), 3.87 (s, 3H), 2.11 (s, 4H). HRMS (ESI+ve) calculated for C13H16N5O2 (M+H—Cl)+ 274.1298, found 274.1301.




2-(4-(2-aminopyrimidin-4-ylamino)phenyl)acetic acid hydrochloride (1as). This was obtained from 2-amino-4-chloropyrimidine (0.092 g, 0.710 mmol), and 2-(4-aminophenyl)acetic acid (0.107 g, 0.710 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solvent was removed under reduced pressure. The obtained the solid was filtered, slurried with acetone, filtered and dried under vacuum to provide pure 1as (0.149 g, 0.530 g, 75%)—as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 7.69 (d, J=7.3 Hz, 2H), 7.65 (s, 1H), 7.31 (d, J=8.4 Hz, 2H), 6.28 (d, J=7.3 Hz, 1H), 3.60 (s, 2H).




N-(4-(methylsulfonyl)phenyl)pyrimidine-2,4-diamine hydrochloride (1at). This was obtained from 2-amino-4-chloropyrimidine (0.104 g, 0.802 mmol), and 4-(methylsulfonyl)aniline (0.143 g, 827 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, slurried with MeOH, filtered, and dried under vacuum Pure 1at (0.165 g, 0.534 mmol, 67%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.08 (d, J=8.7 Hz, 2H), 7.96 (d, J=8.8 Hz, 2H), 7.82 (d, J=7.2 Hz, 1H), 6.39 (d, J=7.2 Hz, 1H), 3.12 (s, 3H). MS (M+H)+ 265.07.




N-(4-(methylthio)phenyl)pyrimidine-2,4-diamine hydrochloride (1au). This was obtained from 2-amino-4-chloropyrimidine (0.099 g, 0.764 mmol), and 4-(methylthio)aniline (0.106 g, 764 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with DCM, and dried under vacuum Pure 1au (0.085 g, 0.316 mmol, 41%) as a yellow solid 1H NMR (400 MHz, CD3OD) δ 7.69 (d, J=7.3 Hz, 2H), 7.66 (s, 1H), 7.29 (d, J=8.7 Hz, 2H), 6.28 (d, J=7.3 Hz, 1H), 2.48 (s, 3H). HRMS (ESI+ve) calculated for C11H13N4S (M+H—Cl)+ 232.0855, found 232.0864.




Methyl 4-(2-aminopyrimidin-4-ylamino)benzoate hydrochloride (1aw). A mixture of 2-amino-4-chloropyrimidine (0.140 g g, 1.08 mmol), and methyl-4-aminobenzoic acid (0.163 g, 1.08 mmol) was stirred in a Biotage microwave reactor for 15 min at 150° C. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, DCM, dried under vacuum. Pure 1aw (0.189 g, 0.908 mmol, 84%) as a pale yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.03 (d, J=8.62 Hz, 2H), 7.93 (d, J=8.6 Hz, 2H), 7.78 (d, J=7.2 Hz, 1H), 6.37 (d, J=7.2 Hz, 1H), 3.90 (s, 3H). HRMS (ESI+ve) calculated for C12H13N4O2 (M+H)+ 245.1033, found 245.1043.




Methyl 3-(2-aminopyrimidin-4-ylamino)benzoate hydrochloride (1ay). A mixture of 2-amino-4-chloropyrimidine (0.097 g, 0.748 mmol), and methyl-3-aminobenzoic acid (0.113 g, 0.748 mmol) was stirred in a Biotage microwave reactor for 15 min at 120° C. After cooling to room temperature, the solvent was removed under reduced pressure and the obtained solid was slurried with DCM, filtered, dried under vacuum to provide pure lay (0.136 g, 0.485 mmol, 65%) as a pale yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.34 (s, 1H), 8.10 (s, 1H), 7.84 (d, J=7.9 Hz, 1H), 7.74 (d, J=7.2 Hz, 1H), 7.51 (t, J=7.9 Hz, 1H), 6.32 (d, J=7.2 Hz, 1H), 3.93 (s, 3H). HRMS (ESI+ve) calculated for C12H13N4O2 (M+H)+ 245.1033, found 245.1042.




N-(1H-indol-5-yl)pyrimidine-2,4-diamine hydrochloride (1az). This was obtained as a white solid from 2-amino-4-chloropyrimidine (0.115 g, 0.887 mmol), and 1H-indol-5-amine (0.117 g, 887 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solid precipitate was filtered, washed with DCM, and dried under vacuum Pure 1az (0.161 g, 0.612 mmol, 69%) was obtained as a brown solid. 1H NMR (400 MHz, CD3OD) δ 7.85 (s, 1H), 7.64 (d, 1H, J=7.6 Hz, 1H), 7.55 (d, J=8.4 Hz, 1H), 7.27 (d, J=2.9 Hz, 1H), 7.14 (s, 1H), 6.45 (d, J=2.8 Hz, 1H), 6.27 (d, J=6.8 Hz, 1H), HRMS (ESI+ve) calculated for C12H12N5 (M+H—Cl)+ 226.1087, found 226.1092




N4-(1H-indol-6-yl)pyrimidine-2,4-diamine hydrochloride
N-(1H-indol-6-yl)pyrimidine-2,4-diamine hydrochloride (1ba). This was obtained from 2-amino-4-chloropyrimidine (0.131 g, 1.01 mmol), and 1H-indol-6-amine (0.133 g, 1.01 mmol) in a similar manner as described for 1am. After cooling to room temperature, the solvent was removed under reduced pressure. The remaining solid was slurried with ether, DCM, filtered and dried under vacuum. Pure 1ba (0.136 g, 0.519 mmol, 51%) as a brown solid 1H NMR (400 MHz, CD3OD) δ 7.96 (s, 1H), 7.62 (d, J=7.3 Hz, 1H), 7.39 (s, 1H), 7.28 (s, 2H), 6.46 (s, d, J=2.3 Hz, 1H), 6.25 (s, 1H), HRMS (ESI+ve) calculated for C12H12N5 (M+H—Cl)+ 226.1087found 226.1095.




N 4-(3,4-dihydroquinolin-1(2H)-yl)pyrimidin-2-amine (16). This was obtained from 2-amino-4-chloropyrimidine (0.120 g, 0.926 mmol), and 1,2,3,4-tetrahydroquinoline (0.185 g, 1.389 mmol), in a similar manner as described for 1aw. After cooling to room temperature, Et3N (1 ml) was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether, dried under vacuum. Pure 16 (0.089 g, 0.392 mmol, 42%) was obtained as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.73 (d, J=6.2 Hz, 1H), 7.32 (d, J=8.1 Hz, 1H), 7.19 (d, J=7.5 Hz, 1H), 7.14 (d, J=7.6 Hz, 1H), 7.05 (t, J=7.4 Hz, 1H), 6.35 (d, J=6.2 Hz, 1H), 3.91 (t, J=6.3 Hz, 2H), 2.74 (t, J=6.5 Hz, 2H), 1.94 (p, 2H, J=6.5 Hz, 2H). HRMS (ESI+ve) calculated for C13H15N4 (M+H)+ 227.1291, found 227.1294.




4-(2-methylindolin-1-yl)pyrimidin-2-amine (13b). This was obtained from 2-amino-4-chloropyrimidine (0.091 g, 0.702 mmol) and 2-methylindoline (0.093 g, 0.702 mmol),) in a similar manner as described for 1aw. After cooling to room temperature, Et3N (1 ml) was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether, dried under vacuum. Pure 13b (0.090 g, 0.396 mmol, 56%) was obtained as an off-white solid 1H NMR (400 MHz, CD3OD) δ 8.31 (d, J=8.1 Hz, 1H), 7.87 (d, J=6.2 Hz, 1H), 7.21 (d, J=8.0 Hz, 1H), 7.16 (d, J=7.9 Hz, 1H), 6.97-6.91 (m, 1H), 6.24 (d, J=6.2 Hz, 1H), 4.69-4.61 (m, 1H), 3.40 (dd, J=15.8, 9.1 Hz, 1H), 2.69 (d, J=15.8 Hz, 1H), 1.26 (d, J=6.3 Hz, 3H). HRMS (ESI+ve) calculated for C13H15N4 (M+H)+ 227.1291, found 227.1292




N-(4-nitrophenyl)pyrimidine-2,4-diamine hydrochloride (1bb). This was obtained from 2-amino-4-chloropyrimidine (0.109 g, 0.841 mmol) p-nitroaniline (0.116 g, 0.841 mmol), in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum (0.116 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with methanol, filtered and dried under vacuum (0.029 g). The two batches were combined to provide pure 1bb (0.145 g, 0.541 mmol, 64%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.27 (d, J=9.2 Hz, 2H), 8.07 (d, J=8.9 Hz, 2H), 7.84 (d, J=7.2 Hz, 1H), 6.41 (d, J=7.2 Hz, 1H). HRMS (ESI+ve) calculated for C10H10N5O2 (M+H—Cl)+ 232.0829, found 232.0836




N-(3-nitrophenyl)pyrimidine-2,4-diamine hydrochloride (1bc). This was obtained from 2-amino-4-chloropyrimidine (0.133 g, 1.02 mmol) m-nitroaniline (0.141 g, 1.02 mmol), in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 1bc (0.213 g, 0.795 mmol, 76%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.63 (s, 1H), 8.19 (d, J=9.8 Hz, 1H), 8.05 (d, J=8.3 Hz, 1H), 7.81 (d, J=5.8 Hz, 1H), 7.64 (t, J=8.2 Hz, 1H), 6.37 (d, J=7.2 Hz, 1H). HRMS (ESI+ve) calculated for C10H10N5O2 (M+H—Cl)+ 232.0829, found 232.0838




N4-(4-ethylphenyl)pyrimidine-2,4-diamine
N-(4-ethylphenyl)pyrimidine-2,4-diamine (1bd). This was obtained from 2-amino-4-chloropyrimidine (0.091 g, 0.702 mmol), and p-ethylaniline (0.085 g, 0.702 mmol) in a similar manner as described for 1aw. After cooling to room temperature, Et3N (1 ml) was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether, dried under vacuum. Pure 1bd (0.064 g, 0.299 mmol, 43%) was obtained as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.72 (d, J=6.4 Hz, 1H), 7.45 (d, J=8.4 Hz, 2H), 7.14 (d, J=8.2 Hz, 2H), 6.02 (d, J=6.0 Hz, 1H), 2.61 (q, J=7.6 Hz, 2H), 1.21 (t, J=7.6 Hz, 3H). HRMS (ESI+ve) calculated for C12H15N4 (M+H—Cl)+ 215.1291, found 215.1308




N-(3-methoxyphenyl)pyrimidine-2,4-diamine hydrochloride (1be). This was obtained from 2-amino-4-chloropyrimidine (0.090 g, 0.694 mmol), and 3-methoxyaniline (0.085 g, 0.694 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, ether, further triturated with methanol, filtered and dried under vacuum (0.015 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with methanol, filtered and dried under vacuum (0.033 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with DCM, filtered and dried under vacuum (0.077 g). The three batches were combined to provide pure 1be (0.125 g, 0.494 mmol, 71%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 7.70 (d, J=7.3 Hz, 1H), 7.35-7.24 (m, 3H), 6.78 (d, J=7.2 Hz, 1H), 6.29 (d, J=7.3 Hz, 1H), 3.81 (s, 3H). HRMS (ESI+ve) calculated for C11H13N4O (M+H—Cl)+ 217.1083, found 217.1098.




N-(4-ethoxyphenyl)pyrimidine-2,4-diamine (1bf). This was obtained from 2-amino-4-chloropyrimidine (0.118 g, 0.910 mmol), and p-ethoxyaniline (0.124 g, 0.910 mmol) in a similar manner as described for 1aw. After cooling to room temperature, Et3N (1 ml) was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether, dried under vacuum. Pure 1bf (0.137 g, 0.593 mmol, 65%) was obtained as an off-white solid. 1H NMR (400 MHz, CD3OD) δ 7.70 (d, J=6.1 Hz, 1H), 7.40 (d, J=8.9 Hz, 2H), 6.87 (d, J=8.9 Hz, 2H), 5.96 (d, J=4.5 Hz, 1H), 4.01 (q, J=7.0 Hz, 2H), 1.37 (t, J=7.0 Hz, 3H). HRMS (ESI+ve) calculated for C12H15N4O (M+H)+ 231.1240, found 231.1253




N-(4-(difluoromethoxy)phenyl)pyrimidine-2,4-diamine (1bg). This was obtained from 2-amino-4-chloropyrimidine (0.098 g, 0.756 mmol), and 4-(difluoromethoxy)aniline (0.120 g, 0.756 mmol) in a similar manner as described for 1aw. After cooling to room temperature, Et3N (1 ml) was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether/hexane solution (1/1), dried under vacuum. Pure 1bg (0.155 g, 0.613 mmol, 81%) was obtained as a brown solid. 1H NMR (400 MHz, CD3OD) δ 7.75 (d, J=6.0 Hz, 1H), 7.66 (d, J=9.0 Hz, 2H), 7.08 (d, J=9.0 Hz, 2H), 6.73 (t, J=74.5 Hz, 1H), 6.03 (d, J=6.0 Hz, 1H). HRMS (ESI+ve) calculated for C11H11F2N4O (M+H)+ 253.0895, found 253.0904.




2-phenylindoline (12a). NaBH3CN (2.11 g, 33.62 mmol) was added to a suspension of 2-phenylindole (1.083 g, 5.60 mml) in acetic acid (glacial, 24 mL) at 0° C. under Argon. The reaction mixture was then stirred at room temperature for 3 h. An aq. sat. solution of NaHCO3 was then added slowly to pH 8-9. The mixture was then extracted with AcOEt, the organic phase separated, dried (Na2SO4), filtered and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 12a (0.174 g, 0.892 mmol, 16%) as a yellow oil. 1H NMR (400 MHz, CDCl3) δ 744-7.30 (m, 5H), 7.10-7.-4 (m, 2H), 6.74 (td, J=7.5, 0.9 Hz, 1H), 6.68 (d, J=7.7 Hz, 1H), 4.96 (t, J=9.0 Hz, 1H), 3.45 (dd, J=15.7, 9.1 Hz, 1H), 2.99 (dd, J=15.6, 9.0 Hz, 1H).




5-chloro-2-methylindoline (12b). This was obtained from 5-chloro-2-methylindole (0.372 g, 2.25 mmol), in a similar manner as described for 12a. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 12b (0.256 g, 1.532 mmol, 68%) as a brown oil. 1H NMR (400 MHz, CDCl3) δ 7.06-6.98 (m, 1H), 6.96-6.92 (m, 1H), 6.49 (d, J=8.2 Hz, 1H), 4.08-3.92 (m, 1H), 3.12 (dd, J=15.7, 8.5 Hz, 1H), 2.61 (dd, J=15.7, 7.6 Hz, 1H), 1.27 (d, J=6.3 Hz, 3H).




5-fluoro-indoline (12c). This was obtained from 5-fluoroindole (0.316 g, 2.33 mmol), in a similar manner as described for 12a. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 12c (0.041 g, 0.299 mmol, 13%) as a colourless oil. 1H NMR (400 MHz, CDCl3) δ 7.00-6.96 (m, 1H), 6.37-6.30 (m, 2H), 3.59 (t, J=8.4 Hz, 2H), 2.97 (t, J=8.4 Hz, 2H).




5-fluoro-2-methylindoline (12d). This was obtained from 5-fluoro-2-methylindole (0.426 g, 2.85 mmol), in a similar manner as described for 12a. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 12d (0.144 g, 0.953 mmol, 33%) as a colourless oil. 1H NMR (400 MHz, CDCl3) δ 6.80-6.77 (m, 1H), 6.71-6.67 (m, 1H), 6.49 (dd, J=8.4, 4.4 Hz, 1H), 4.07-3.84 (m, 1H), 3.12 (dd, J=15.7, 8.4 Hz, 1H), 2.62 (dd, J=15.7, 7.9 Hz, 1H), 1.28 (d, J=6.2 Hz, 3H).




3-methylindoline (12e). This was obtained from 3-methylindole (0.414 g, 3.15 mmol), in a similar manner as described for 12a. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 12e (0.123 g, 0.924 mmol, 29%) as a colourless oil. 1H NMR (400 MHz, CDCl3) δ 7.09-7.08 (m, 1H), 7.04-7.01 (m, 1H), 6.74 (t, J=7.2 Hz, 1H), 6.65 (d, J=7.8 Hz, 1H), 3.70 (t, J=8.6 Hz, 1H), 3.41-3.18 (m, 1H), 3.11 (t, J=8.6 Hz, 1H), 1.33 (d, J=6.7 Hz, 3H).




N-(3-methoxybenzyl)indoline-4-carboxamide (12f). This was obtained from 29a (0.186 g, 0.663 mmol), in a similar manner as described for 12a. The crude material (0.163 g, 0.578 mmol, 87%) was used in the next step without further purification. 1H NMR (400 MHz, CDCl3) δ δ 7.24 (t, J=7.8 Hz, 1H), 6.99 (t, J=7.7 Hz, 1H), 690-6.85 (m, 3H), 6.81 (dd, J=8.2, 2.0 Hz, 1H), 6.66 (d, J=7.7 Hz, 1H), 6.47 (s, 1H), 4.54 (d, J=5.7 Hz, 2H), 3.77 (s, 3H), 3.51 (t, J=8.4 Hz, 2H), 3.25 (t, J=8.4 Hz, 2H).




N-(5-chloroindolin-1-yl)pyrimidin-2-amine hydrochloride (13c). This was obtained from 2-amino-4-chloropyrimidine (0.100 g, 0.771 mmol), and 5-chloroindoline (0.118 g, 0.771 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with DCM and dried under vacuum. Pure 13c (0.166 g, 0.586 mmol, 76%) was obtained as an off-white solid 1H NMR (400 MHz, CD3OD) δ 8.63 (s, 1H), 7.85 (d, J=7.4 Hz, 1H), 7.31 (s, 1H), 7.23 (d, J=8.5 Hz, 1H), 6.43 (t, J=4.0 Hz, 1H), 4.23 (t, J=8.2 Hz, 2H). HRMS (ESI+ve) calculated for C12H12N4Cl (M+H)+ 247.0745, found 247.0753.




4-(3,4-dihydroisoquinolin-2(1H)-yl)pyrimidin-2-amine hydrochloride (17). This was obtained from 2-amino-4-chloropyrimidine (0.116 g, 0.895 mmol), and 1,2,3,4-tetrahydroisoquinoline (0.262 g, 1.97 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, dried under vacuum. Pure 17 (0.154 g, 0.679 mmol, 76%) as a white solid. 1H NMR (400 MHz, CD3OD) δ 7.75 (d, J=6.4 Hz, 1H), 7.18-7.16 (m, 4H), 6.16 (d, J=6.4 Hz, 1H), 4.72 (s, 2H), 3.83 (t, J=5.9 Hz, 2H), 2.91 (t, J=5.9 Hz, 2H). HRMS (ESI+ve) calculated for C13H15N4 (M+H—Cl)+ 227.1291, found 227.1293.




4-(6-nitroindolin-1-yl)pyrimidin-2-amine hydrochloride (13d). This w obtained from 2-amino-4-chloropyrimidine (0.106 g, 0.818 mmol), and 6-nitroindoline (0.134 g, 0.818 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, dried under vacuum. Pure 13d (0.200 g, 0.680 mmol, 83%) as a yellow solid 1H NMR (400 MHz, CD3OD) δ 9.32 (s, 1H), 8.04 (dd, J=1.9, 8.4 Hz, 1H), 7.94 (d, J=7.4 Hz, 1H), 7.52 (d, 1H, J=8.2 Hz, 1H), 6.52 (d, J=6.9 Hz, 1H), 4.34 (t, J=8.5 Hz, 2H), 3.42 (t, J=8.1 Hz, 2H). HRMS (ESI+ve) calculated for C12H12N5O2 (M+H—Cl)+ 258.0985, found 258.0988.




4-(5-nitroindolin-1-yl)pyrimidin-2-amine hydrochloride (13e). This was obtained from 2-amino-4-chloropyrimidine (0.103 g, 0.795 mmol), and 5-nitroindoline (0.130 g, 0.795 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, dried under vacuum. Pure 13e (0.174 g, 0.592 mmol, 75%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.84 (d, J=7.6 Hz, 1H), 8.24-8.17 (m, 2H,), 7.97 (d, J=7.4 Hz, 1H), 6.56 (d, 1H, J=7.5 Hz, 1H), 4.35 (t, J=8.5 Hz, 2H), 3.41 (t, J=8.5 Hz, 2H).). HRMS (ESI+ve) calculated for C12H12N5O2 (M+H—Cl)+ 258.0985, found 258.0990.




4-(5-fluoroindolin-1-yl)pyrimidin-2-amine hydrochloride (13f). This was obtained from 2-amino-4-chloropyrimidine (0.143 g, 1.10 mmol), and 5-fluoroindoline (0.151 g, 1.10 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, dried under vacuum. Pure 13f (0.220 g, 0.592 mmol, 75%) as an off white solid. 1H NMR (400 MHz, CD3OD) δ 8.66 (s, 1H), 7.83 (d, J=7.5 Hz, 1H), 7.08 (d, J=6.9 Hz, 1H), 7.00-6.95 (m, 1H), 6.44 (d, J=6.3 Hz, 1H), 4.25 (t, J=8.4 Hz, 2H). HRMS (ESI+ve) calculated for C12H12FN5 (M+H—Cl)+ 231.1040, found 231.1045.




4-(5-(methylsulfonyl)indolin-1-yl)pyrimidin-2-amine hydrochloride (13g). This was obtained from 2-amino-4-chloropyrimidine (0.110 g, 0.849 mmol), and 5-(methylsulfonyl)indoline (0.167 g, 0.849 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, dried under vacuum. Pure 13g (0.214 g, 0.654 mmol, 77%) as an off white solid. 1H NMR (400 MHz, CD3OD) δ 8.87 (s, 1H), 7.95 (dd, J=0.8, 7.4 Hz, 1H), 7.87 (s, 1H), 7.85-7.83 (m, 1H), 6.54 (d, J=7.4 Hz, 1H), 4.32 (t, J=8.5 Hz, 2H), 3.40 (t, J=8.6 Hz, 2H), 3.12 (s, 3H). HRMS (ESI+ve) calculated for C13H14N4O2S (M+H—Cl)+ 291.0910, found 291.0915.




4-(3-phenylindolin-1-yl)pyrimidin-2-amine hydrochloride (13h). This was obtained from 2-amino-4-chloropyrimidine (0.077 g, 0.594 mmol), and 12a (0.116 g, 0.594 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum (0.036 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with acetone, filtered and dried under vacuum (0.107 g). The two batches were combined to provide pure 13h (0.143 g, 0.440 mmol, 74%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.75 (s, 1H), 7.67 (d, J=7.6 Hz, 1H), 7.37-7.24 (m, 5H), 7.19 (t, J=7.4 Hz, 3H), 6.22 (s, 1H), 5.78 (d, J=10.0 Hz, 1H), 3.91 (dd, J=9.8, 16.5 Hz, 1H), 3.04 (d, J=16.3 Hz, 2H). HRMS (ESI+ve) calculated for C18H17N4 (M+H—Cl)+ 289.1447, found 289.1447




4-(3-methyl-5-nitroindolin-1-yl)pyrimidin-2-amine hydrochloride (13i). This was obtained from 2-amino-4-chloropyrimidine (0.115 g, 0.887 mmol), and 3-methyl-5-nitroindoline (0.158 g, 0.887 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum Pure 13i (0.094 g, 0.304 mmol, 34%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 9.21 (s, 1H), 8.06 (dd, J=2.1, 8.2 Hz, 1H), 7.94 (d, J=7.5 Hz, 1H), 7.55 (d, J=8.3 Hz, 1H), 6.65 (d, J=7.5 Hz, 1H), 4.99-4.94 (m 1H), 3.60 (dd, J=9.0, 17.0 Hz, 1H), 2.97 (d, J=17.0 Hz, 2H), 1.36 (d, J=6.5 Hz, 3H). HRMS (ESI+ve) calculated for C13H14N5O2 (M+H—Cl)+ 272.1142, found 272.1141.




4-(5-bromoindolin-1-yl)pyrimidin-2-amine hydrochloride (13j). This was obtained from 2-amino-4-chloropyrimidine (0.081 g, 0.625 mmol), and 5-bromoindoline (0.123 g, 0.625 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 13j (0.149 g, 0.455 mmol, 73%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.59 (s, 1H), 7.86 (d, J=7.5 Hz, 1H), 7.47 (s, 1H), 7.39 (d, J=7.6 Hz, 1H), 6.45 (d, J=5.7 Hz, 1H), 4.23 (t, J=8.5 Hz, 2H). HRMS (ESI+ve) calculated for C12H12BrN4 (M+H—Cl)+ 291.0239, found 291.0240.




1-(2-aminopyrimidin-4-yl)indoline-3-carboxylic acid hydrochloride (13k). This was obtained from 2-amino-4-chloropyrimidine (0.070 g, 0.540 mmol), and indoline-3-carboxylic acid (0.088 g, 0.540 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 13k (0.079 g, 0.269 mmol, 50%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.70 (s, 1H), 7.85 (s, 1H), 7.32-7.28 (m, 3H), 7.16 (t, J=7.3 Hz, 1H), 6.32 (s, 1H), 5.32 (s, 1H), 3.75-3.68 (m, 1H). HRMS (ESI+ve) calculated for C13H13O2N4 (M+H—Cl)+ 257.1033, found 257.1034




4-(3-methylindolin-1-yl)pyrimidin-2-amine hydrochloride (13l). This was obtained from 2-amino-4-chloropyrimidine (0.070 g, 0.540 mmol), and 12e (0.072 g, 0.540 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum (0.058 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with acetone, filtered and dried under vacuum (0.050 g). The two batches were combined to provide pure 131 (0.108 g, 0.411 mmol, 76%) as a yellow solid. 1H NMR (400 MHz, CD3OD) δ 8.62 (s, 1H), 7.83 (d, J=7.5 Hz, 1H), 7.33 (d, J=7.4 Hz, 1H), 7.28 (t, J=7.2 Hz, 1H), 7.17 (t, J=7.3 Hz, 1H), 6.47 (d, J=6.1 Hz, 1H). 4.40 (t, 1H, J=9.9 Hz, 1H), 3.75 (dd, J=6.3, 10.9 Hz, 1H), 3.61 (m, 1H), 1.40 (d, J=6.9 Hz, 3H). HRMS (ESI+ve) calculated for C13H15N4 (M+H—Cl)+ 227.1291, found 227.1290




4-(5-chloro-3-methylindolin-1-yl)pyrimidin-2-amine hydrochloride (13m). This was obtained from 2-amino-4-chloropyrimidine (0.055 g, 0.431 mmol), and 12b (0.072 g, 0.341 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solvent was removed under reduced pressure. The obtained solid was slurried DCM, filtered and dried under vacuum. Pure 13m (0.082 g, 0.276 mmol, 64%) was obtained as an off white solid. 1H NMR (400 MHz, CD3OD) δ 8.52 (s, 1H), 7.85 (d, J=7.5 Hz, 1H), 7.35 (s, 1H), 7.26 (dd, J=8.5, 1.5 Hz, 1H), 6.58 (d, J=7.4 Hz, 1H), 3.50 (dd, J=8.9, 16.3 Hz, 1H), 2.84 (d, J=16.3 Hz, 1H), 1.32 (d, J=6.4 Hz, 3H). HRMS (ESI+ve) calculated for C13H14ClN4 (M+H—Cl)+ 261.0901, found 261.0904




1-(2-aminopyrimidin-4-yl)indoline-5-sulfonamide hydrochloride (13n). This was obtained from 2-amino-4-chloropyrimidine (0.076 g, 0.586 mmol), and indoline-5-sulfonamide (0.116 g, 0.586 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 13n (0.170 g, 0.518 mmol, 88%) was obtained as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 8.72 (d, J=8.6 Hz, 1H), 8.06 (d, J=7.2 Hz, 1H), 7.70 (s, 1H), 7.64 (d, J=10.0 Hz, 1H), 7.33 (s, 2H), 6.53 (s, 1H), 6.46 (d, J=7.2 Hz, 1H), 4.21 (t, J=8.4 Hz, 2H), 3.27 (t, J=8.3 Hz, 2H). HRMS (ESI+ve) calculated for C12H14ClN5O2S (M+H—Cl)+ 292.0862, found 292.0863.




4-(5-fluoro-3-methylindolin-1-yl)pyrimidin-2-amine hydrochloride (13o). This was obtained from 2-amino-4-chloropyrimidine (0.042 g, 0.324 mmol), and 12d (0.049 g, 0.324 mmol) in a similar manner as described for 1aw. After cooling to room temperature, Et3N was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with ether, dried under vacuum. Pure 13o (0.043 g, 0.171 mmol, 53%) was obtained as an off white solid. 1H NMR (400 MHz, CD3OD) δ 8.39 (dd, J=4.9, 8.8 Hz, 1H), 7.87 (d, J=6.1 Hz, 1H), 6.97 (d, J=8.1 Hz, 1H), 6.89 (td, J=9.1, 2.7 Hz, 1H), 6.19 (d, J=6.2 Hz, 1H), 4.69-4.62 (m, 1H), 3.42 (dd, J=9.4, 16.5 Hz, 1H), 2.71 (d, J=16.4 Hz, 1H), 1.26 (d, J=6.3 Hz, 3H). HRMS (ESI+ve) calculated for C13H14FN4 (M+H—Cl)+ 245.1197, found 245.1211




4-(6-fluoroindolin-1-yl)pyrimidin-2-amine hydrochloride (13p). This was obtained from 2-amino-4-chloropyrimidine (0.026 g, 0.204 mmol), and 12c (0.028 g, 0.204 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 13p (0.032 g, 0.120 mmol, 59%) was obtained as an off white solid 1H NMR (400 MHz, CD3OD) δ 8.44 (d, J=10.8 Hz, 1H), 7.88 (d, J=7.2 Hz, 1H), 7.26-7.22 (m, 1H), 6.83-6.79 (m, 1H), 6.37 (dd, J=7.1, 1.1 Hz, 1H), 4.22 (t, 2H, J=8.3 Hz, 2H), 3.24 (t, J=9.2 Hz, 2H), HRMS (ESI+ve) calculated for C12H12FN4 (M+H—Cl)+ 231.1040, found 231.1038




4-(4-(benzyloxy)indolin-1-yl)pyrimidin-2-amine hydrochloride (13q). This was obtained from 2-amino-4-chloropyrimidine (0.090 g, 0.694 mmol), and 4-(benzyloxy)indoline (0.156 g, 0.694 mmol) in a similar manner as described for 1aw. After cooling to room temperature, the solid precipitate was filtered, washed with methanol, and dried under vacuum. Pure 13q (0.119 g, 0.336 mmol, 48%) was obtained as an off white solid. 1H NMR (400 MHz, CD3OD) δ 8.30 (s, 1H), 7.82 (d, J=7.5 Hz, 1H), 7.45-7.43 (m, 2H), 7.39-7.35 (m, 2H), 7.33-7.28 (m, 1H), 7.22 (t, J=8.3 Hz, 1H), 6.84 (d, J=8.3 Hz, 1H), 6.39 (s, 1H), 5.15 (s, 2H), 4.21 (t, J=8.2 Hz, 2H), 3.22 (t, J=8.1 Hz, 2H). HPLC: Purity 99.53%, MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min, Rt 10.067 min. HRMS (ESI−ve) calculated for C19H19N4O (M+H)+ 319.1553, found 319.1563




4-(4-(benzyloxy)indolin-1-yl)-7H-pyrrolo[2,3-d]pyrimidine (35). A mixture of -(benzyloxy) indoline (0.060 g, 0.266 mmol), 4-chloro-7H-pyrrolo[2,3-d]pyrimidine (0.039 g, 0.253 mmol) in anhydrous ethanol (0.6 ml) was stirred in a Biotage microwave reactor for 30 min at 150° C. After cooling to room temperature, Et3N was added. The solvent was removed under reduced pressure. The remaining solid was slurried with water, filtered, washed with methanol, dried under vacuum. Pure 35 (0.046 g, 0.134 mmol, 53%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 11.86 (s, 1H), 8.29 (s, 1H), 8.18 (d, J=8.2 Hz, 1H), 7.46 (d, J=7.0 Hz, 2H), 7.39 (t, J=7.4 Hz, 2H), 7.33-7.25 (m, 2H), 7.12 (t, J=8.3 Hz, 1H), 6.69-6.67 (m, 2H), 5.16 (s, 2H), 4.53 (t, J=9.5 Hz, 2H), 3.17 (t, J=9.4 Hz, 2H). HRMS (ESI−ve) calculated for C21H19N4O (M+H)+ 343.1553, found 343.1562




4-(1H-indol-1-yl)pyrimidin-2-amine (15a). A mixture of 2-amino-4-chloropyrimidine (0.206 g, 1.590 mmol), indole (0.372 g, 3.180 mmol) and Cs2CO3 (1.550 g, 4.77 mmol) in anhydrous DMF (1.6 ml) was stirred in a Biotage microwave reactor for 1 h at 110° C. After cooling to room temperature, the reaction mixture diluted with water (5 ml) and extracted with ethyl acetate (2×10 ml). The combined organic extracts were dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15a (0.125 g, 0.593 mmol, 37%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.78 (d, 1H, J=8.28 Hz), 8.23 (d, J=5.64 Hz, 1H), 8.03 (d, J=3.64 Hz, 1H), 7.59 (d, J=7.76 Hz, 1H), 7.27-7.22 (m, 1H), 7.17 (t, J=7.36 Hz, 1H), 6.93 (d, J=5.92 Hz, 1H), (bs, 2H), 6.74 (d, J=3.60 Hz, 1H); HRMS (ESI−ve) calculated for C12H11N4 (M+H)+ 211.0978, found 211.0979.




4-(1H-benzo[d]imidazol-1-yl)pyrimidin-2-amine (18). A mixture of 2-amino-4-chloropyrimidine (0.120 g, 0.926 mmol), imidazole (0.109 g, 0.926 mmol) and Cs2CO3 (0.603 g, 1.852 mmol) in anhydrous DMF (0.9 ml) was stirred in a Biotage microwave reactor for 1 h at 110° C. After cooling to room temperature, water was added to the reaction mixture. The solid precipitate was filtered and dried under vacuum. The obtained solid was slurried with methanol, filtered, further slurried with ethyl acetate, filtered and dried under vacuum. Pure 18 (0.038 g, 0.178 mmol, 19%) was obtained as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.02 (s, 1H), 8.62 (d, J=7.0 Hz, 1H), 8.34 (d, J=5.5 Hz, 1H), 7.73 (d, J=8.5 Hz, 1H), 7.38-7.30 (m, 2H), 7.12 (d, J=5.6 Hz, 1H), 7.06 (s, 2H); HRMS (ESI−ve) calculated for C11H10N5 (M+H)+ 212.0930, found 212.0929.




4-(6-fluoro-1H-indol-1-yl)pyrimidin-2-amine (15b) A mixture of 2-amino-4-chloropyrimidine (0.062 g, 0.478 mmol), 6-fluoroindole (0.083 g, 0.621 mmol) and Cs2CO3 (0.467 g, 1.43 mmol) in anhydrous NMP (0.5 ml) was stirred in a Biotage microwave reactor for 30 min at 180° C. After cooling to room temperature, the reaction mixture diluted with water (5 ml) and extracted with ethyl acetate (2×10 ml). The combined organic extracts were dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15b as a brown solid which was triturated with methanol, filtered, dried in vacuo. Pure 15b was obtained (0.013 g, 0.057 mmol, 25%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.66 (dd, J=2.5, 11.4 Hz, 1H), 8.24 (d, J=5.6 Hz, 1H), 8.06 (d, J=3.7 Hz, 1H), 7.60 (dd, J=5.8, 8.6 Hz, 1H), 7.05 (td, J=2.0, 8.8 Hz, 1H), 6.95 (s, 2H) 6.93 (d, J=5.7 Hz, 1H), 6.76 (d, J=3.7 Hz, 1H); HPLC: Purity 97.73%, MeOH 40%, (0.1% TFA in H2O) 60%, 20 min, Flow 1 ml/min, Rt11.533 min, HRMS (ESI−ve) calculated for C12H10N4 (M+H)+ 229.0884, found 229.0895




4-(5-bromo-1H-indol-1-yl)pyrimidin-2-amine (15c). A mixture of 2-amino-4-chloropyrimidine (0.091 g, 0.702 mmol), 5-bromoindole (0.083 g, 0.621 mmol) and Cs2CO3 (0.686 g) in anhydrous NMP (0.8 ml) was stirred in a Biotage microwave reactor for 30 min at 150° C. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15c as an off white solid which was triturated with water, filtered, dried in vacuo. Pure 15c was obtained (0.100 g, 0.345 mmol, 49%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.77 (d, J=8.9 Hz, 1H), 8.25 (d, J=5.6 Hz, 1H), 8.11 (d, J=3.7 Hz, 1H), 7.82 (d, J=2.0 Hz, 1H), 7.35 (dd, J=8.9, 2.1 Hz, 1H), 6.94-6.92 (m, 3H), 6.75 (d, J=3.6 Hz, 1H). HPLC: Purity 99.02%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 11.533 min, Purity 98.18%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 16.240 min, HRMS (ESI−ve) calculated for C12H10BrN4 (M+H)+ 289.0083, found 289.0077




4-(6-chloro-1H-indol-1-yl)pyrimidin-2-amine (15d). This was obtained from 2-amino-4-chloropyrimidine (0.088 g, 0.689 mmol), and 6-chloroindole (0.154 g, 1.01 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15d as an orange oil. Water was added to the obtained oil and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 15d was obtained (0.089 g, 0.363 mmol, 49%) as an off-white solid 1H NMR (400 MHz, DMSO-d6) δ 8.84 (d, 1H, J=1.92 Hz), 8.25 (d, J=5.64 Hz, 1H), 8.08 (d, J=3.68 Hz, 1H), 7.61 (d, J=8.36 Hz, 1H), 7.21 (dd, J=8.38, 1.98 Hz, 1H), 6.98 (bs, 2H, disappeared on D2O shake), 6.93 (d, J=5.68 Hz, 1H), 6.78 (dd, J=3.68, 0.8 Hz, 1H), HPLC: Purity 99.02%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 8.360 min, Purity 99.44 2%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 10.933 min; HRMS (ESI−ve) calculated for C12H10ClN4 (M+H)+ 245.0588, found 245.0589




4-(6-methoxy-1H-indol-1-yl)pyrimidin-2-amine (15e). This was obtained from 2-amino-4-chloropyrimidine (0.089 g, 0.686 mmol), and 6-methoxyindole (0.151 g, 1.02 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded pure 15e (0.081 g, 0.336 mmol, 49%). 1H NMR (400 MHz, DMSO-d6) δ 8.32 (d, 1H, J=2.24 Hz), 8.22 (d, J=5.64 Hz, 1H), 7.87 (d, J=3.68 Hz, 1H), 7.46 (d, J=8.52 Hz, 1H), 6.89 (d, J=5.72 Hz, 1H), 6.87 (bs, 2H), 6.82 (dd, J=8.58, 2.38 Hz, 1H), 6.65 (d, J=3.12 Hz, 1H), 3.83 (m, 3H). HPLC: Purity 99.02%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min: Rt 5.613 min; Purity 99.51%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 6.600 min. HRMS (ESI−ve) calculated for C13H13ON4 (M+H)+ 241.1083, found 241.1083




4-(4-(benzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21a). This was obtained from 2-amino-4-chloropyrimidine (0.087 g, 0.671 mmol), and 4-benzyloxyindole (0.224 g, 1.00 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 21a as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 21a was obtained (0.107 g, 0.337 mmol, 50%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.35 (d, J=8.4 Hz, 1H), 8.23 (d, J=5.6 Hz, 1H), 7.94 (d, J=3.7 Hz, 1H), 7.50 (d, J=7.1 Hz, 2H), 7.39 (t, J=7.4, Hz, 2H), 7.32 (t, J=7.3 Hz, 1H), 7.16 (t, J=8.2 Hz, 1H), 6.92 (d, J=5.7 Hz, 1H), 6.87 (s, 2H), 6.81 (d, J=7.9 Hz, 1H), 6.78 (d, J=3.4 Hz, 1H), 5.24 (s, 2H). HPLC: Purity 99.46%, CH3CN 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 3.413 min, Purity 98.48%, MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min, Rt 12.600 min, HRMS (ESI−ve) calculated for C19H17ON4 (M+H)+ 317.1396, found 317.1399.




4-phenethoxy-1H-indole (20a). A mixture of 4-hydroxyindole (1) (0.400 g, 3.00 mmol), (2-bromoethyl)benzene (0.557 g, 3.00 mmol) and K2CO3 (1.243 g, 9.0 mmol) in acetone (3 mL) was refluxed under argon for 4 days. After cooling to room temperature, the solid precipitate was filtered and washed with acetone. The filtrates were combined and the solvent was removed under reduced pressure to afford 20a as a black oil (0.714 g, 3.00 mmol, quantitative). The crude material was used in the next step without purification. 1H NMR (400 MHz, CDCl3) δ 8.08 (s, 1H), 7.30-7.21 (m, 5H), 7.06-7.03 (m, 1H), 7.01 (d, J=7.8 Hz, 1H), 6.95 (d, J=8.1 Hz, 1H), 6.59 (t, J=1.6 Hz, 1H), 6.45 (d, J=7.6 Hz, 1H), 4.26 (t, J=7.1 Hz, 2H), 3.13 (t, J=7.1 Hz, 2H).




4-(2-chlorobenzyloxy)-1H-indole (20b). A mixture of 4-hydroxyindole (0.133 g, 2.00 mmol), 3-chlorobenzylchloride (0.381 g, 2.4 mmol), and K2CO3 (0.829 g, 6.0 mmol) in acetone (15 mL) was refluxed under argon for 9 days in presence of tetrabutylammonium bromide (0.038 g, 0.118 mmol). After cooling to room temperature, the solid precipitate was filtered and washed with acetone. The organic solutions were combined and the solvent removed under reduced pressure. Chromatography on silica gel, performed using a FlashMaster 3 purification station (AcOEt/Hexane), afforded 20b (0.080 g, 0.311 mmol, 16%) as a brown oil. 1H NMR (400 MHz, CDCl3) δ 8.10 (bs, 1H), 7.61 (dd, J=1.4, 7.2 Hz, 1H), 7.33 (dd, J=1.6, 7.6 Hz, 1H), 7.24-7.16 (m, 2H), 7.07-6.96 (m, 3H), 6.68 (m, 1H), 6.51 (d, J=7.5 Hz, 1H).




4-(3-chlorobenzyloxy)-1H-indole (20c). This was prepared from 4-hydroxyindole (0.133 g, 2.0 mmol) and 3-chlorobenzylbromide (0.205 g, 2.4 mmol) in the same manner as described for 20a. Reaction time: 22 hrs. Chromatography on silica gel performed twice using a FlashMaster 3 purification station (AcOEt/Hexane), afforded 20c (0.267 g, 1.04 mmol, 52%) as a brown oil, Analysis of 1H NMR revealed that a mixture of the desired product and an unknown impurity was isolated. The mixture was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.19 (s, 1H), 7.52 (s, 1H), 7.4-7.28 (m, 3H), 7.16-7.05 (m, 3H), 6.78-6.71 (m, 1H), 6.56 (dd, J=7.3, 1.0 Hz, 1H), 5.21 (s, 2H).




4-(4-chlorobenzyloxy)-1H-indole (20d). This was prepared from 4-hydroxyindole (0.266 g, 2.0 mmol) and 4-chlorobenzylbromide (0.493 g, 2.4 mmol) in a similar manner as described for preparation of 20a. Reaction time: 96 hours. Chromatography on silica gel, performed using the Flash Master purification station (AcOEt/Hexane), afforded an off white solid 20d (0.372 g, 1.44 mmol, 72%). Analysis of 1H NMR revealed that a mixture of the desired product and an unknown impurity was isolated. The mixture was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.13 (s, 1H), 7.37 (d, J=8.3 Hz, 2H), 7.30-7.25 (m, 3H), 7.07 (t, J=3.0 Hz, 1H), 7.03-6.94 (m, 1H), 6.63 (t, J=2.7 Hz, 1H), 6.48 (d, J=7.4 Hz, 1H), 5.13 (s, 2H).




4-(3-chloro-2-fluorobenzyloxy)-1H-indole (20e). This was prepared from 4-hydroxyindole (0.100 g, 0.751 mmol) and 2-fluorobenzylbromide (0.201 g, 0.901 mmol) in a similar manner as described for preparation of 20a. Reaction time: 34 hrs. Chromatography on silica gel, performed using the Flash Master purification station (AcOEt/Hexane), afforded an off-white solid, 20e (0.372 g, 1.44 mmol, 72%) as an off white solid. Analysis of 1H NMR revealed that a mixture of the desired product and an unknown impurity was isolated. The mixture was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.32 (s, 1H), 7.53 (t, J=7.0 Hz, 1H), 7.41-7.34 (m, 1H), 7.14-7.01 (m, 4H), 6.72 (t, J=2.7 Hz, 1H), 6.60 (d, J=7.6 Hz, 1H), 5.32 (s, 2H).




5-phenethoxy-1H-indole (20f). This was prepared from (2-bromoethyl)benzene (0.557 g, 3.00 mmol) and 5-hydroxyindole (0.400 g, 3.00 mmol) in a similar manner as described for preparation of 20a. Reaction tim1: 24 hrs. Chromatography on silica gel, performed using the Flash Master purification station (AcOEt/Hexane), afforded 20f (0.090 g, 0.378 mmol, 13%) as a brown oil. 1H NMR (400 MHz, CDCl3) δ 8.04 (bs, 1H), 7.35-7.32 (m, 2H), 7.26 (m, 3H), 7.18 (t, J=2.8 Hz, 1H), 7.11 (d, J=2.3 Hz, 1H), 6.87 (dd, J=2.4, 8.8 Hz, 1H), 6.46 (m, 1H), 4.23 (t, J=7.2 Hz, 2H), 3.13 (t, J=7.2 Hz, 2H).




4-(4-(2-chlorobenzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21h) A mixture of 20b (0.068 g, 0.264 mmol) and 2-amino-4-chloropyrimidine (0.041 g, 0.317 mmol) in anhydrous 1-Methyl-2-pyrrolidinone (0.42 mL) and cesium carbonate (0.328 g, 1.00 mmol), was heated in the microwave at 150° C. for 30 minutes. After cooling to room temperature, the solvent was removed under reduced pressure. Chromatography on silica gel, performed using the Flash Master 3 purification station (AcOEt/Hexane), afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water and dried under vacuum. Pure 21h was obtained as an off white solid (0.017 g, 0.0486 mmol, 18%). 1H NMR (400 MHz, CDCl3) δ 8.27 (bs, 1H), 7.97 (d, J=8.5 Hz, 1H), 7.58-7.56 (m, 2H), 7.35 (dd, J=1.7, 7.2 Hz, 1H), 7.25-7.14 (m, 3H), 6.86 (d, J=3.6 Hz, 1H), 6.74 (d, J=4.9 Hz, 1H), 6.66 (d, J=7.9 Hz, 1H), 5.27 (s, 2H), 5.21 (bs, 2H); HPLC purity 99.87% {tR=5.047 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):70/30]}; HRMS (ESI+ve) m/z calculated for C19H16N4OCl (M+H)+ 351.1007, found 351.1000.




4-(4-(3-chlorobenzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21g). This was prepared from 20c (0.100 g, 0.382 mmol) and 2-amino-4-chloropyrimidine (0.060 g, 0.458 mmol) in a similar manner as described for 12 h. Chromatography on silica gel, performed using the Flash Master 3 purification station (AcOEt/Hexane), afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum, triturated with a solution of hexane/ethyl acetate (8/2), filtered and dried under vacuum. Pure 21g was obtained as an off white solid (0.020 g, 0.056 mmol, 15%). 1H NMR (400 MHz, CDCl3) δ 8.31 (d, J=5.9 Hz, 1H), 8.04 (d, J=8.4 Hz, 1H), 7.64 (d, J=3.6 Hz, 1H), 7.51 (s, 1H), 7.34 (m, 3H), 7.22 (m, 1H), 6.90 (d, J=3.6 Hz, 1H), 6.80 (d, J=5.7 Hz, 1H), 6.69 (d, J=7.8 Hz, 1H), 5.21 (s, 2H), 5.11 (s, 2H); HPLC purity 99.40% {tR=5.047 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):70/30]}; HRMS (ESI+ve) m/z calculated for C19H16N4OCl (M+H)+ 351.1007, found 351.0997.




4-(4-phenethoxy-1H-indol-1-yl)pyrimidin-2-amine (21c). This was prepared from 20a (0.211 g, 0.890 mmol) and 2-amino-4-chloropyrimidine (0.115 g, 0.890 mmol) in a similar manner as described for 12 h. Chromatography on silica gel, performed using the Flash Master 3 purification station, afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum. Pure 21c was obtained as an off white solid (0.071 g, 0.212 mmol, 24%). 1H NMR (400 MHz, DMSO-d6) δ 8.32 (d, J=8.4 Hz, 1H), 8.23 (d, J=5.7 Hz, 1H), 7.91 (d, J=3.7 Hz, 1H), 7.37 (d, J=7.3 Hz, 2H), 7.31 (t, J=7.5 Hz, 2H), 7.23-7.18 (m, 1H), 7.15 (t, J=8.2 Hz, 1H), 6.91 (s, OH), 6.86 (s, 2H), 6.74 (d, J=8.0 Hz, 1H), 6.67 (d, J=3.6 Hz, 1H), 4.29 (t, J=6.7 Hz, 2H), 3.10 (t, J=6.6 Hz, 2H). HPLC purity 99.14% {tR=5.780 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):60/40]}; HRMS (ESI+ve) m/z calculated for C20H19N4O (M+H)+ 331.1553, found 331.1551.




4-(5-phenethoxy-1H-indol-1-yl)pyrimidin-2-amine (21f). This was prepared from 20f (0.100 g, 0.420 mmol) and 2-amino-4-chloropyrimidine (0.065 g, 0.504 mmol) in a similar manner as described for 12 h. Chromatography on silica gel, performed using the Flash Master 3 purification station, afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum. Pure 21f was obtained as an off white solid (0.038 g, 0.115 mmol, 27%). 1H NMR (400 MHz, CDCl3) δ 8.37 (d, J=9.1 Hz, 1H), 8.27 (d, J=5.8 Hz, 1H), 7.66 (d, J=3.6 Hz, 1H), 7.35-7.31 (m, 3H), 7.27-7.23 (m, 2H), 7.08 (d, J=2.5 Hz, 1H), 6.94 (dd, J=2.5, 9.1 Hz, 1H), 6.73 (d, J=5.7 Hz, 1H), 6.62 (d, J=3.6 Hz, 1H), 5.09 (s, 2H), 4.24 (t, J=7.2 Hz, 2H), 3.14 (t, J=7.2 Hz, 2H); HPLC purity 99.05% {tR=16.960 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):60/40]}; HRMS (ESI+ve) m/z calculated for C20H19N4O (M+H)+ 331.1553, found 331.1545.




4-(5-(benzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21b) A mixture of 5-benzyloxyindole (0.207 g, 0.926 mmol), 2-amino-4-chloropyrimidine (0.080 g, 0.617 mmol), and cesium carbonate (0.600 g, 0.59 mmol) in NMP (0.65 mL) was stirred, at 150° C. for 30 minutes in a microwave. After cooling to room temperature, water was added and the reaction mixture was extracted with DCM. The organic extract was dried over Na2SO4, the solvent removed under reduced pressure. Chromatography on silica gel, performed using the Flash Master 3 purification station (AcOEt/Hexane), afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum. Pure 21b was obtained as an off white solid (0.058 g, 0.183 mmol, 30%). 1H NMR (400 MHz, DMSO-d6) δ 8.71 (d, J=9.1 Hz, 1H), 8.20 (d, J=5.7, 1H), 8.01 (d, J=3.6 Hz, 1H), 7.47 (d, J=7.0, 2H), 7.38 (t, J=7.4 Hz, 2H), 7.31 (t, J=7.9 Hz, 1H), 7.20 (d, J=2.4 Hz, 1H), 6.92-6.88 (m, 2H), 6.84 (bs, 2H), 6.67 (d, J=3.6 Hz, 1H), 5.13 (s, 2H); HPLC purity 97.28% {tR=10.960 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):60/40]}; HRMS (ESI+ve) m/z calculated for C18H17N4O (M+H)+ 317.1396, found 317.1396.




4-(6-(benzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21i) This was prepared from 6-(benzyloxy)-1H-indole (0.145 g, 0.643 mmol) and 2-amino-4-chloropyrimidine (0.100 g, 0.772 mmol) in a similar manner as described for 12 h.-Chromatography on silica gel, performed using the Flash Master 3 purification station (AcOEt/Hexane), afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum. Pure 21i was obtained as a pink solid (0.069 g, 0.219 mmol, 34. 1H NMR (400 MHz, CDCl3) δ 8.19 (d, J=5.8 Hz, 1H), 8.06 (d, J=2.2 Hz, 1H), 7.47 (d, J=3.6 Hz, 1H), 7.43-/7.41 (m, 1H), 7.36-7.32 (m, 2H), 7.29-7.26 (d, J=7.3 Hz, 1H), 6.91 (dd, J=8.6, 2.3 Hz, 1H), 6.61 (d, J=5.8 Hz, 1H), 6.57 (d, J=3.5 Hz, 1H), 5.12 (s, 2H), 4.99 (s, 1H).); HPLC purity 99.87% {tR=3.733 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):70/30]}; HRMS (ESI+ve) m/z calculated for C19H17N4O (M+H)+ 317.1396, found 317.1387.




4-(6-(benzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21j) This was prepared from 7-(benzyloxy)-1H-indole (0.145 g, 0.643 mmol) and 2-amino-4-chloropyrimidine (0.100 g, 0.772 mmol) in a similar manner as described for 12 h.-Chromatography on silica gel, performed using the Flash Master 3 purification station (AcOEt/Hexane), afforded a yellow oil. Water was added and the solid precipitate was filtered, washed with water, dried under vacuum. Pure 21j was obtained as a pink solid (0.016 g, 0.051 mmol, 7%). 1H NMR (400 MHz, DMSO-d6) δ 8.04 (d, J=5.4 Hz, 1H), 7.63 (d, J=3.5 Hz, 1H), 7.35-7.28 (m, 5H), 7.24 (d, J=7.7 Hz, 1H), 7.11 (t, J=7.8 Hz, 1H), 6.95 (d, J=7.9 Hz, 1H), 6.72 (s, 2H), 6.67 (d, J=3.3 Hz, 1H), 6.58 (d, J=5.4 Hz, 1H), 5.15 (s, 2H). HPLC purity 98.79% {tR=3.360 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):70/30]}; HRMS (ESI+ve) m/z calculated for C19H17N4O (M+H)+ 317.1396, found 317.1406.




N4-(2-(benzyloxy)phenyl)pyrimidine-2,4-diamine (1ah) A mixture of 2-(benzyloxy)aniline (0.154 g, 0.772 mmol) and 2-amino-4-chloropyrimidine (0.100 g, 0.77 2 mmol) in anhydrous ethanol (0.700 mL) was stirred, at 150° C. for 20 minutes in a microwave. After cooling to room temperature, the solvent was removed under reduced pressure. Ethyl acetate was added and the mixture was stirred under refluxed for 2 h. The solid precipitated was filtered, dried under vacuum. Pure 1ah was obtained as an off white solid (0.135 g, 0.462 mmol, 60%). 1H NMR (400 MHz, CD3OD) δ 7.79 (s, 1H), 7.66 (s, 1H), 7.4-7.13 (m, 6H), 7.00 (s, 1H), 6.40 (s, 1H), 5.17 (s, 2H); purity 97.96% {tR=7.327 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C17H17N4O (M+H—Cl)+ 293.1396, found 293.1392.




4-(4-(3-chloro-2-fluorobenzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21d). This was obtained from 2-amino-4-chloropyrimidine (0.062 g, 0.478 mmol), and 20e (0.088 g, 0.319 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 21d as an off white solid. The obtained solid was slurried with ether, filtered, and dried in vacuo. Pure 21d was obtained (0.025 g, 0.067 mmol, 21%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.39 (d, J=8.5 Hz, 1H), 8.24 (d, J=5.6 Hz, 1H), 7.95 (d, J=3.7 Hz, 1H), 7.62-7.56 (m, 2H), 7.27 (t, J=8.4 Hz, 1H), 7.19 (t, J=8.2 Hz, 1H), 6.93 (d, J=5.7 Hz, 1H), 6.87-6.85 (m, 3H), 6.77 (d, J=3.6 Hz, 1H), 5.33 (s, 2H). HPLC: Purity 99.72%, MeOH 70%, (0.1% TFA in H2O) 30%, 20 min, Flow 1 ml/min, Rt 7.233 min. HRMS (ESI−ve) calculated for C19H15N5OClF (M+H)+ 369.0912, found 369.0912




4-(4-(4-chlorobenzyloxy)-1H-indol-1-yl)pyrimidin-2-amine (21e) This was obtained from 2-amino-4-chloropyrimidine (0.109 g, 0.843 mmol), and 20d (0.144 g, 0.562 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 21e as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water, slurried with a solution CH3CN/Ether, filtered, and dried in vacuo. Pure 21e was obtained (0.035 g, 0.099 mmol, 18%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.36 (d, J=8.5 Hz, 1H), 8.24 (d, J=5.7 Hz, 1H), 7.95 (d, J=3.7 Hz, 1H), 7.53 (d, J=8.5 Hz, 2H), 7.45 (d, J=8.5 Hz, 2H), 7.17 (t, J=8.2 Hz, 1H), 6.92 (d, J=5.7 Hz, 1H), 6.87 (s, 2H), 6.80-6.78 (m, 2H), 5.24 (s, 2H). HPLC: Purity 99.77%, MeOH 70%, (0.1% TFA in H2O) 30%, 20 min, Flow 1 ml/min, Rt 6.827 min. HRMS (ESI−ve) calculated for C19H16N5OCl (M+H)+ 351.1007, found 351.1009




4-(5-methoxy-1H-indol-1-yl)pyrimidin-2-amine (15f). This was obtained from 2-amino-4-chloropyrimidine (0.103 g, 0.795 mmol), and 5-methoxyyindole (0.175 g, 1.19 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15f as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 15f was obtained (0.084 g, 0.348 mmol, 44%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.70 (d, J=9.1 Hz, 1H), 8.20 (d, J=5.7 Hz, 1H), 8.01 (d, J=3.6 Hz, 1H), 7.11 (d, J=2.5 Hz, 1H), 6.89 (d, J=5.7 Hz, 1H), 6.85-6.82 (m, 2H), 6.67 (d, J=3.5 Hz, 1H), 3.77 (s, 3H); HPLC: Purity 98.73%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min: Rt 4.760 min; Purity 99.68%, MeOH 40%, (0.1% TFA in H2O) 60%, 20 min, Flow 1 ml/min, Rt 14.147 min, HRMS (ESI−ve) calculated for C13H13ON4 (M+H)+ 241.1083, found 241.1086.




4-(5-methyl-1H-indol-1-yl)pyrimidin-2-amine (15g). This was obtained from 2-amino-4-chloropyrimidine (0.096 g, 0.741 mmol), and 5-methylindole (0.194 g, 1.482 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 15g as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 15g was obtained (0.056 g, 0.249 mmol, 37%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.65 (d, J=8.5 Hz, 1H), 8.21 (d, J=5.7 Hz, 1H), 7.99 (d, J=3.7 Hz, 1H), 7.37 (s, 1H), 7.07 (dd, J=8.6, 1.8 Hz, 1H), 6.90 (d, J=5.7 Hz, 1H), 6.84 (s, 2H), 6.66 (d, J=3.6 Hz, 1H), 2.38 (s, 3H). HPLC: Purity 99.52%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 7.873 min. HRMS (ESI−ve) calculated for C13H13N4 (M+H)+ 225.1134, found 225.1134




N-(2-(1-(2-aminopyrimidin-4-yl)-5-methoxy-1H-indol-3-yl)ethyl)acetamide (15h). This was obtained from 2-amino-4-chloropyrimidine (0.043 g, 0.333 mmol), and melatonine (0.155 g, 0.667 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with DCM. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/MeOH) afforded 15h as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 15h was obtained (0.028 g, 0.086 mmol, 13%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.70 (d, J=9.0 Hz, 1H), 8.17 (d, J=5.7 Hz, 1H), 8.02 (t, J=4.6 Hz, 1H), 7.83 (s, 1H), 7.10 (d, J=2.5 Hz, 1H), 6.85-6.83 (m, 2H), 6.78 (s, 2H), 3.79 (s, 3H), 2.79 (t, J=7.1 Hz, 2H), 1.79 (s, 3H). HPLC: Purity 91.11%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 4.153 min. HRMS (ESI−ve) calculated for C17H20N5O2 (M+H)+ [M+H]+326.1611, found 326.1620




N-phenethyl-1H-indole-5-carboxamide (23a) A mixture of indole-5-carboxylic acid (0.173 g, 1.073 mmol) and 2-phenylethanamine (0.143 g, 1.180 mmol), EDC-HCl (0.226 g g, 1.178 mmol), cat. 4-dimethylaminopyridine in DCM (1.1 mL) was heated in the Biotage Microwave for 15 min at 60° C. The solution was washed with aq. 1N HCl, extracted with DCM. The organic phase was separated, washed with aq. NaHCO3 (sat. solution), separated, dried over Na2SO4, filtered, and the solvent removed under reduced pressure to provide 23a (0.160 g, 0.606 mmol, 56%) as an off white solid. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.54 (s, 1H), 8.02 (d, J=1.6 Hz, 1H), 7.58 (dd, J=8.5, 1.7 Hz, 1H), 7.39 (d, J=8.5 Hz, 1H), 7.36-7.30 (m, 2H), 7.28-7.24 (m, 4H), 6.62-6.58 (m, 1H), 6.21 (s, 1H), 3.76 (q, J=6.8 Hz, 2H), 2.96 (t, J=6.9 Hz, 2H).




N-phenyl-1H-indole-5-carboxamide (23b) This was obtained as an off white solid (0.145 g, 0.614 mmol, 55%) from indole-5-carboxylic acid (0.182 g, 1.129 mmol) and aniline (0.115 g, 1.242 mmol) in a similar manner as described for 23a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.49 (s, 1H), 8.21 (s, 1H), 7.91 (s, 1H), 7.75 (dd, J=8.5, 1.6 Hz, 1H), 7.68 (d, J=8.0 Hz, 2H), 7.47 (d, J=8.6 Hz, 1H), 7.38 (t, J=7.9 Hz, 2H), 7.32-7.30 (m, 1H), 7.15 (t, J=7.4 Hz, 1H), 6.67-6.66 (m, 1H).




N-benzyl-1H-indole-5-carboxamide (23c) This was obtained as an off white solid (0.179 g, 0.716 mmol, 73%) from indole-5-carboxylic acid (0.158 g, 0.980 mmol) and benzylamine (0.115 g, 1.078 mmol) in a similar manner as described for 23a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 9.32 (s, 1H), 8.13 (s, 1H), 7.63 (dd, J=8.5, 1.6 Hz, 1H), 7.36-7.25 (m, 6H), 7.21-7.14 (t, J=2.7 Hz, 1H), 6.72 (t, J=5.6 Hz, 1H), 6.54-6.53 (m, 1H), 4.66 (d, J=5.7 Hz, 2H).




N-phenethyl-1H-indole-4-carboxamide (23d) This was obtained as an off white solid (0.206 g, 0.780 mmol, 67%) from indole-4-carboxylic acid (0.189 g, 1.172 mmol) and 2-phenylethanamine (0.56 g, 1.290 mmol) in a similar manner as described for 23a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 9.22 (s, 1H), 7.45 (s, J=6.4 Hz, 2H), 7.34-7.31 (m, 2H), 7.27-7.25 (m, 3H), 7.21 (t, J=2.7 Hz, 1H), 7.15 (t, J=7.8 Hz, 1H), 6.69 (s, 1H), 6.36-6.34 (m, 1H), 3.81 (q, J=6.8 Hz, 2H), 2.99 (t, J=6.9 Hz, 2H).




N-phenyl-1H-indole-4-carboxamide (23e) This was obtained as an off white solid (0.265 g, 1.12 mmol, 77%) from indole-4-carboxylic acid (0.235 g, 1.450 mmol) and aniline (0.149 g, 1.603 mmol) in a similar manner as described for 23a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 9.16 (s, 1H), 8.10 (s, 1H), 7.70 (d, J=9.5 Hz, 1H), 7.60 (d, J=7.4 Hz, 1H), 7.50 (d, J=8.2 Hz, 1H), 7.40-7.36 (m, 2H), 7.27-=7.26 (m, 1H), 7.22 (d, J=7.9 Hz, 1H), 7.18-7.13 (m, 1H), 6.95-6.94 (m, 1H).




N-(1H-indol-5-yl)benzamide (26a) This was obtained from 5-aminoindole (0.235 g, 1.450 mmol) and benzoic acid (0.149 g, 1.603 mmol) in a similar manner as described for 21a. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded pure 26a (0.137 g, 0.580 mmol, 40%). 1H NMR (400 MHz, CDCl3) δ 8.22 (s, 1H), 7.98 (s, 1H), 7.91 (d, J=7.0 Hz, 2H), 7.86 (s, 1H), 7.57-7.48 (m, 3H), 7.39-7.37 (m, 2H), 7.24 (t, J=3.0 Hz, 1H), 6.55 (t, J=2.5 Hz, 1H)




N-(1H-indol-5-yl)-3-phenylpropanamide (26b) This was obtained as an off white solid (0.343 g, 0.972 mmol, 74%) from 5-aminoindole (0.174 g, 1.316 mmol) and 3-phenylpropanoic acid (0.237 g, 1.579 mmol) in a similar manner as described for 21a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.47 (s, 1H), 7.64 (d, J=1.7 Hz, 1H), 7.30 (s, 1H), 7.23-7.11 (m, 6H), 7.07-7.04 (d, J=2.8 Hz, 1H), 7.03 (dd, J=8.7, 1.9 Hz, 1H), 6.38 (s, 1H), 2.98 (t, J=7.7 Hz, 2H), 2.57 (t, J=7.7 Hz, 2H).




N-(1H-indol-5-yl)-2-phenylacetamide (26c). This was obtained as an off white solid (0.629 g, 2.50 mmol, 92%) from 5-aminoindole (0.357 g, 2.70 mmol) and 2-phenylacetic acid (0.478 g, 3.5 mmol) in a similar manner as described for 21a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.22 (s, 1H), 7.74 (d, J=1.8 Hz, 1H), 7.46-7.31 (m, 4H), 7.28-7.26 (m, 2H), 7.18 (d, J=2.6 Hz, 1H), 7.12 (d, J=2.0 Hz, 1H), 7.10 (d, J=2.0 Hz, 1H), 6.48-6.46 (m, 1H), 3.77 (s, 2H).




N-(3-methoxybenzyl)-1H-indole-4-carboxamide (29a) A mixture of indole-5-carboxylic acid (0.258 g, 1.60 mmol) and 3-methoxybenzylamine (0.263 g, 1.92 mmol), EDC-HCl (0.432 g g, 2.26 mmol), cat. 4-dimethylaminopyridine (0.007 g) in CH3CN (1.1 mL) was heated in the Biotage Microwave for 30 min at 80° C. The solution was washed with aq. 1N HCl, extracted with DCM. The organic phase was separated, washed with aq. NaHCO3 (sat. solution), separated, dried over Na2SO4, filtered, and the solvent removed under reduced pressure to provide 29a (0.311 g, 1.11 mmol, 69%) as an off white solid. The crude material was used as obtained in the next step. 1H NMR (400
MHz, CDCl3) δ 8.48 (s, 1H), 7.53-7.50 (m, 2H), 7.34-7.27 (m, 2H), 7.24-7.19 (d, J=7.8 Hz, 1H), 6.99 (d, J=7.7 Hz, 1H), 6.95-6.93 (m, 2H), 6.84 (dd, J=8.1, 2.7 Hz, 1H), 6.51 (s, 1H), 4.71 (d, J=5.8 Hz, 2H), 3.80 (s, 3H).




N-benzyl-1H-indole-4-carboxamide (23f) This was obtained as an off white solid (0.229 g, 0.916 mmol, 66%) from indole-4-carboxylic acid (0.225 g, 1.396 mmol) and benzylamine (0.165 g, 1.535 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.86 (s, 1H), 7.51 (d, J=4.3 Hz, 1H), 7.49 (d, J=5.1 Hz, 1H), 7.40-7.33 (m, 4H), 7.31-7.25 (m, 2H), 7.17 (t, J=8 Hz, 1H), 6.89 (s, 1H), 6.60 (s, 1H), 4.73 (d, J=5.6 Hz, 2H).




N-(1-phenylethyl)-1H-indole-4-carboxamide (29b) This was obtained as an off white solid (0.218 g, 0825 mmol, 52%) from indole-4-carboxylic acid (0.256 g, 1.588 mmol) and 1-phenylethanamine (0.230 g, 1.98 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.67 (s, 1H), 7.45-7.35 (m, 4H), 7.27 (t, J=7.5 Hz, 2H), 7.20-7.14 (m, 2H), 7.12 (t, J=7.8 Hz, 1H), 6.81 (s, 1H), 6.42 (d, J=7.9 Hz, 1H), 5.37 (quin, J=7.0 Hz, 1H), 1.57 (d, J=6.8 Hz, 3H).




N-(2-fluorobenzyl)-1H-indole-4-carboxamide (29c) This was obtained as an off white solid (0.354 g, 1.32 mmol, 66%) from indole-4-carboxylic acid (0.322 g, 1.99 mmol) and 2-fluorobenzylamine (0.300 g, 2.39 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.52 (s, 1H), 7.53-7.39 (m, 3H), 7.32-7.21 (m, 3H), 7.14-7.05 (m, 2H), 6.93 (s, 1H), 6.62 (s, 1H), 4.78 (d, J=5.9 Hz, 2H).




N-(2-chlorobenzyl)-1H-indole-4-carboxamide (29d) This was obtained as an off white solid (0.373 g, 1.31 mmol, 71%) from indole-4-carboxylic acid (0.296 g, 1.83 mmol) and 2-chlorobenzylamine (0.312 g, 2.20 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.53 (s, 1H), 7.58-7.49 (m, 3H), 7.42-7.38 (m, 1H), 7.32 (t, J=3.0 Hz, 1H), 7.26-7.19 (m, 3H), 6.95 (m, 1H), 6.72 (s, 1H), 4.81 (d, J=6.0 Hz, 2H).




N-(3-fluorobenzyl)-1H-indole-4-carboxamide (29e) This was obtained as an off white solid (0.221 g, 0.824 mmol, 52%) from indole-4-carboxylic acid (0.257 g, 1.59 mmol) and 3-fluorobenzylamine (0.238 g, 1.90 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.53 (s, 1H), 7.54-7.51 (m, 2H), 7.29-7.32 (m, 2H), 7.25-7.17 (m, 2H), 7.12 (d, J=7.9 Hz, 1H), 7.05-6.93 (m, 2H), 6.59 (s, 1H), 4.72 (d, J=6.0 Hz, 2H).




N-(3-chlorobenzyl)-1H-indole-4-carboxamide (29f) This was obtained as an off white solid (0.244 g, 0.859 mmol, 55%) from indole-4-carboxylic acid (0.252 g, 1.56 mmol) and 3-chlorobenzylamine (0.264 g, 1.87 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.58 (s, 1H), 7.56-7.50 (m, 2H), 7.39 (d, J=1.9 Hz, 1H), 7.32 (t, J=2.9 Hz, 1H), 7.30-7.17 (m, 4H), 6.93 (t, J=2.6 Hz, 1H), 6.58 (s, 1H), 4.71 (d, J=6.0 Hz, 2H).




N-(4-methoxybenzyl)-1H-indole-4-carboxamide (29g) This was obtained as an off white solid (0.304 g, 1.085 mmol, 66%) from indole-4-carboxylic acid (0.266 g, 1.65 mmol) and 4-methoxybenzylamine (0.270 g, 1.96 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 9.06 (s, 1H), 7.50 (d, J=7.3 Hz, 1H), 7.47 (d, J=8.2 Hz, 1H), 7.31 (d, J=8.7 Hz, 2H), 7.26-7.21 (m, 1H), 7.16 (t, J=7.8 Hz, 1H), 6.92-6.85 (m, 3H), 6.54 (t, J=5.8 Hz, 1H), 4.65 (d, J=5.6 Hz, 2H), 3.79 (s, 3H).




N-(4-fluorobenzyl)-1H-indole-4-carboxamide (29h) This was obtained as an off white solid (0.240 g, 0.895 mmol, 56%) from indole-4-carboxylic acid (0.257 g, 1.59 mmol) and 4-fluorobenzylamine (0.234 g, 1.86 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.62 (s, 1H), 7.52 (d, J=7.5 Hz, 2H), 7.38-7.35 (m, 2H), 7.31 (t, J=2.9 Hz, 1H), 7.21 (t, J=7.8 Hz, 1H), 7.07-7.00 (m, 2H), 6.91-6.90 (m, 1H), 6.54 (s, 1H), 4.69 (d, J=5.8 Hz, 2H).




N-(4-chlorobenzyl)-1H-indole-4-carboxamide (29i) This was obtained as an off white solid (0.289 g, 1.017 mmol, 56%) from indole-4-carboxylic acid (0.290 g, 1.79 mmol) and 4-chlorobenzylamine (0.287 g, 2.05 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.54 (s, 1H), 7.56-7.52. (m, 2H), 7.36-7.32 (m, 5H), 7.23 (t, J=7.6 Hz, 1H), 6.92 (s, 1H), 6.54 (s, 1H), 4.68 (d, J=5.6 Hz, 2H).




N-(2-methoxybenzyl)-1H-indole-4-carboxamide (20j) This was obtained as an off white solid (0.360 g, 1.44 mmol, 91%) from indole-4-carboxylic acid (0.251 g, 1.55 mmol) and 2-methoxybenzylamine (0.262 g, 1.96 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.90 (s, 1H), 7.45 (d, J=7.4 Hz, 1H), 7.39 (d, J=8.1 Hz, 1H), 7.31 (d, J=7.3 Hz, 1H), 7.22-7.18 (m, 2H), 7.10 (t, J=7.8 Hz, 1H), 6.92-6.66 (m, 4H), 4.65 (d, J=5.8 Hz, 2H), 3.79 (s, 3H).




(S)—N-(1-phenylethyl)-1H-indole-4-carboxamide (29k) This was obtained as an off white solid (0.269 g, 1.01 mmol, 72%) from indole-4-carboxylic acid (0.230 g, 1.42 mmol) and (S)-1-phenylethanamine (0.190 g, 1.57 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.87 (s, 1H), 7.52 (d, J=7.3 Hz, 1H), 7.47-7.42 (m, 3H), 7.36 (t, J=7.5 Hz, 2H), 7.29-7.21 (m, 2H), 7.18 (t, J=7.8 Hz, 1H), 6.88 (s, 1H), 6.53 (d, J=7.4 Hz, 1H), 5.44 (quin, J=7.0 Hz, 1H), 1.65 (d, J=6.9 Hz, 3H).




(R)—N-(1-phenylethyl)-1H-indole-4-carboxamide (29l) This was obtained as an off white solid (0.284 g, 1.07 mmol, 80%) from indole-4-carboxylic acid (0.217 g, 1.34 mmol) and (R)-1-phenylethanamine (0.190 g, 1.57 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 9.03 (s, 1H), 7.51 (d, J=7.4 Hz, 1H), 7.47-7.42 (m, 3H), 7.36 (t, J=7.5 Hz, 2H), 7.29-7.21 (m, 2H), 7.18 (t, J=7.8 Hz, 1H), 6.86 (s, 1H), 6.55 (d, J=7.9 Hz, 1H), 5.45 (quin, J=7.1 Hz, 1H), 1.65 (d, J=6.9 Hz, 3H).




(R)—N-(1-(3-methoxyphenyl)ethyl)-1H-indole-4-carboxamide (29m) This was obtained as an off white solid (0.294 g, 1.05 mmol, 28%) from indole-4-carboxylic acid (0.608 g, 3.77 mmol) and (R)-1-(3-methoxyphenyl)ethanamine (0.613 g, 4.06 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.66 (s, 1H), 7.50 (t, J=8.1 Hz, 2H), 7.31-7.24 (m, 2H), 7.19 (t, J=7.7 Hz, 1H), 7.02 (d, J=8.0 Hz, 1H), 6.98 (t, J=2.1 Hz, 1H), 6.90-6.88 (m, 1H), 6.82 (dd, J=8.2, 2.6 Hz, 1H), 6.47 (d, J=7.5 Hz, 1H), 5.41 (quin, J=7.0 Hz, 1H), 3.80 (s, 3H), 1.64 (d, J=6.8 Hz, 3H).




(S)—N-(1-(3-methoxyphenyl)ethyl)-1H-indole-4-carboxamide (29n) This was obtained as an off white solid (0.538 g, 1.83 mmol, 66%) from indole-4-carboxylic acid (0.451 g, 2.79 mmol) and (S)-1-(3-methoxyphenyl)ethanamine (0.511 g, 3.38 mmol) in a similar manner as described for 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CDCl3) δ 8.61 (s, 1H), 7.50-7.48 (m, 2H), 7.33-7.28 (m, 2H), 7.19 (t, J=7.9 Hz, 1H), 7.02 (d, J=7.7 Hz, 1H), 66.97 (t, J=2.08 Hz, 1H), 6.90-6.89 (m, 1H), 6.82 (dd, J=7.9, 2.7 Hz, 1H), 6.47 (d, J=7.4 Hz, 1H), 5.41 (quin, J=7.0 Hz, 1H), 3.80 (s, 3H), 1.64 (d, J=6.8 Hz, 3H).




N-(1H-indol-4-yl)-2-(3-methoxyphenyl)acetamide (26d) A mixture of 4-Aminoindole (0.150 g, 1.135 mmol), 3-methoxyphenyl acetic acid (260 g, 1.564 mmol), EDC hydrochloride (0.440 g, 2.26 mmol), 4-dimethylaminopyridine (0.050 g, 0.410 mmol) in acetonitrile (4 mL) was heated in the Biotage Microwave for 30 min at 80° C. The solution was then washed with 10 mL of 1N HCl, extracted with ethyl acetate, and then washed with 10 mL of a saturated NaHCO3 solution. The organic phase was dried over Na2SO4 and filtered. The solution was concentrated under reduced pressure to afford 26d as a dark brown solid (0.312 g, 1.114 mmol, 99%). The crude material was used in the next step without purification. 1H NMR (400 MHz, CDCl3) δ 8.22 (s, 1H), 7.79 (t, J=4.4 Hz, 1H), 7.47-7.29 (m, 1H), 7.17 (d, J=4.5 Hz, 2H), 7.11 (t, J=2.9 Hz, 1H), 7.01 (d, J=7.9 Hz, 1H), 6.94-6.92 (m, 1H), 5.99 (t, J=2.2 Hz, 1H), 3.84 (s, 3H), 3.82 (s, 2H).




N-(3-(methylsulfonamido)benzyl)-1H-indole-4-carboxamide (29o) This was obtained as a green solid (0.056 g, 0.148 mmol, 59%) from N-(3 (aminomethyl)phenyl)methanesulfonamide (0.059 g, 0.249 mmol) and indole-4-carboxylic acid (0.036 g, 0.224 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material; was used in the net step without further purification. 1H NMR (400 MHz, CD3OD) δ 7.55 (d, J=8.1 Hz, 1H), 7.45 (d, J=7.4 Hz, 1H), 7.37-7.28 (m, 3H), 7.20 (d, J=8.3 Hz, 1H), 7.16 (d, J=7.7 Hz, 2H), 6.84 (d, J=3.1 Hz, 1H), 4.62 (s, 2H), 2.94 (s, 3H).




N-(3-acetamidobenzyl)-1H-indole-4-carboxamide ((29p). This was obtained as a brown oil (0.050 g, 0.163 mmol, 33%). from N-(3-(aminomethyl)phenyl)acetamide (0.110 g, 0.550 mmol) and indole-4-carboxylic acid (0.080 g, 0.495 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used in the next step without purification. 1H NMR (400 MHz, CD3OD) δ 7.58-7.53 (m, 2H), 7.48-7.44 (m, 2H), 7.35 (d, J=3.2 Hz, 1H), 7.29 (t, J=7.9 Hz, 1H), 7.20-7.13 (m, 2H), 6.85 (dd, J=3.1, 0.8 Hz, 1H), 4.62 (s, 2H), 2.10 (s, 3H).




(R)—N-(1-phenylpropyl)-1H-indole-4-carboxamide (29q) This was obtained as an off-white solid (0.072 g, 0.259 mmol, 38%) from (R)-1-phenylpropan-1-amine (0.110 g, 0.818 mmol, 0.080 mL) and indole-4-carboxylic acid (0.110 g, 0.682 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CD3OD) δ 7.53 (d, J=8.2 Hz, 1H), 7.44-7.89 (m, 3H), 7.37-7.31 (m, 3H), 7.26-7.27 (m, 1H), 7.16 (t, J=7.8 Hz, 1H), 6.75-6.72 (m, 1H), 5.04 (t, J=7.6 Hz, 1H), 1.94 (d, J=15.9 Hz, 2H), 1.02 (t, J=7.4 Hz, 3H).




(S)—N-(1-phenylpropyl)-1H-indole-4-carboxamide (29r) This was obtained as an of-white solid (0.370 g, 1.329 mmol, 39%) from (S)-1-phenylpropan-1-amine (0.605 g, 4.478 mmol) and indole-4-carboxylic acid (0.603 g, 3.731 mmol) in a similar manner as described for preparation of 29a. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CD3OD) δ 7.53 (d, J=8.2 Hz, 1H), 7.48-7.40 (m, 3H), 7.36-7.31 (m, 3H), 7.26-7.21 (m, 1H), 7.16 (t, J=7.8 Hz, 1H), 6.73 (dd, J=3.1, 0.9 Hz, 1H), 5.07-5.01 (m, 1H), 2.04-1.83 (m, 2H), 1.01 (t, J=7.4 Hz, 3H).




(R)—N-(2-methoxy-1-phenylethyl)-1H-indole-4-carboxamide (29s) This was obtained a brown oil (0.035 g, 0.119 mmol, 30%). from (R)-2-methoxy-1-phenylethanamine (0.060 g, 0.397 mmol) and indole-4-carboxylic acid (0.64 g, 0.397 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CD3OD) δ 7.55 (d, J=8.2 Hz, 1H), 7.45 (d, J=7.4 Hz, 3H), 7.38-7.30 (m, 3H), 7.27 (t, J=7.8 Hz, 1H), 7.18 (t, J=7.8 Hz, 1H), 6.80 (d, J=3.1 Hz, 1H), 5.46-5.28 (m, 1H), 3.90-3.65 (m, 2H), 3.42 (s, 3H).




N-(3-methoxybenzyl)-N-methyl-1H-indole-4-carboxamide (29t) This was obtained as a brown oil (0.062 g, 0.211 mmol, 34%) from 1-(3-methoxyphenyl)-N-methylmethanamine (0.114 g, 0.745 mmol, 0.11 mL) and indole-4-carboxylic acid (0.100 g, 0.621 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. MS (M+H)+ 295.14.




N-(3-(2-methoxyethoxy)benzyl)-1H-indole-4-carboxamide (29u) This was obtained as a green oil (0.128 g, 0.395 mmol, 34%) from (3-(2-methoxyethoxy)phenyl)methanamine (0.256 g, 1.414 mmol, 0.15 mL) and indole-4-carboxylic acid (0.190 g, 1.178 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, CD3OD) δ 7.55 (dt, J=8.1, 0.9 Hz, 1H), 7.43 (dd, J=7.4, 0.9 Hz, 1H), 7.35 (d, J=3.2 Hz, 1H), 7.25 (t, J=7.9 Hz, 1H), 7.16 (t, J=7.9 Hz, 1H), 7.00-6.98 (m, 2H), 6.85-6.82 (m, 2H), 4.61 (s, 2H), 4.12-4.07 (m, 2H), 3.75-3.65 (m, 2H), 3.40 (s, 3H).




N-(3-ethoxybenzyl)-1H-indole-4-carboxamide (29v) This was obtained as a red oil (0.304 g, 1.033 mmol, 83%) from (3-ethoxyphenyl)methanamine (0.225 g, 1.490 mmol, 0.22 mL) and indole-4-carboxylic acid (0.200 g, 1.241 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, DMSO-d6) δ 11.26 (s, 1H), 8.72 (t, J=5.8 Hz, 1H), 7.53 (d, J=8.0 Hz, 1H), 7.45 (d, J=7.3 Hz, 1H), 7.40 (t, J=2.9 Hz, 1H). 7.21 (t, J=8.1 Hz, 1H), 7.13 (t, J=7.7 Hz, 1H), 6.9-6.82 (m, 3H), 6.78-6.76 (m, 1H), 4.46 (d, J=6.0 Hz, 2H), 3.98 (q, J=6.9 Hz, 2H), 1.29 (t, J=6.9 Hz, 3H).




N-(biphenyl-2-ylmethyl)-1H-indole-4-carboxamide (29w) This was obtained as a white solid (0.207 g, 0.634 mmol, 51%). from biphenyl-2-ylmethanamine (0.274 g, 1.495 mmol, 0.26 mL) and indole-4-carboxylic acid (0.200 g, 1.241 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, DMSO-d6) δ 11.25 (s, 1H), 8.64 (t, J=5.8 Hz, 1H), 7.55-7.29 (m, 11H), 7.23 (dd, J=7.2, 1.5 Hz, 1H), 7.12 (t, J=7.7 Hz, 1H), 6.81 (s, 1H), 4.45 (d, J=5.8 Hz, 2H).




N-(3-(N-methylacetamido)benzyl)-1H-indole-4-carboxamide (29x) This was obtained as a brown oil (0.075 g, 0.210 mmol, 17%) from N-(3-(aminomethyl)phenyl)-N-methylacetamide (0.320 g, 1.495 mmol) and indole-4-carboxylic acid (0.200 g, 1.241 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, DMSO-d6) δ 11.27 (s, 1H), 8.78 (t, J=6.0 Hz, 1H), 7.54 (d, J=8.1 Hz, 1H), 7.45 (d, J=6.8 Hz, 1H), 7.42 (t, J=2.7 Hz, 1H), 7.39 (d, J=7.9 Hz, 1H), 7.30-2.27 (m, 2H), 7.19 (d, J=6.9 Hz, 1H), 7.13 (t, J=7.8 Hz, 1H), 6.82 (s, 1H), 4.52 (d, J=6.0 Hz, 2H), 3.13 (s, 3H), 1.76 (s, 3H).




N-(3-(2-oxopyrrolidin-1-yl)benzyl)-1H-indole-4-carboxamide (29y) This was obtained as a brown oil (0.086 g, 0.258 mmol, 35%) from 1-(3-(aminomethyl)phenyl)pyrrolidin-2-one (0.170 g, 0.894 mmol) and indole-4-carboxylic acid (0.120 g, 0.745 mmol) in a similar manner as described for preparation of 29a. Reaction time: 1 hr. The crude material was used as obtained in the next step. 1H NMR (400 MHz, DMSO-d6) δ 11.27 (s, 1H), 8.78 (t, J=5.9 Hz, 1H), 7.66 (s, 1H), 7.53 (t, J=8.5 Hz, 2H), 7.47 (d, J=7.3 Hz, 1H), 7.43-7.39 (m, 1H), 7.32 (t, J=7.8 Hz, 1H), 7.15-7.11 (m, 2H), 6.85 (s, 1H), 4.50 (d, J=5.8 Hz, 2H), 3.81 (t, J=7.0 Hz, 2H), 2.13-1.96 (m, 2H).




1-(2-aminopyrimidin-4-yl)-N-phenyl-1H-indole-4-carboxamide (24a) This was obtained from 2-amino-4-chloropyrimidine (0.065 g, 0.501 mmol), and 23e (0.155 g, 0.667 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water. The solid precipitated was filtered. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded pure 24a (0.032 g, 0.097 mmol, 19%) as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.33 (s, 1H), 9.03 (d, J=8.5 Hz, 1H), 8.27 (d, J=5.6 Hz, 1H), 8.18 (d, J=3.7 Hz, 1H), 7.84-7.72 (m, 2H), 7.68 (d, J=7.1 Hz, 1H), 7.41-7.32 (m, 3H), 7.10-7.05 (m, 2H), 6.97 (d, J=5.8 Hz, 1H), 6.95 (s, 2H). HPLC: Purity 97.51%, MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min, Rt 3.600 min. HRMS (ESI−ve) calculated for C19H16N5O (M+H)+ 330.1349, found 330.1359




1-(2-aminopyrimidin-4-yl)-N-benzyl-1H-indole-4-carboxamide (24b). This was obtained from 2-amino-4-chloropyrimidine (0.072 g, 0.555 mmol), and 23f (0.203 g, 0.812 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with CH3CN, filtered and dried under vacuum. Pure 24b (0.081 g, 0.235 mmol, 42%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.00-8.93 (m, 2H), 8.26 (d, J=5.6 Hz, 1H), 8.12 (d, J=3.6 Hz, 1H), 7.62 (d, J=7.5 Hz, 1H), 7.36-7.30 (m, 5H), 7.25-7.21 (m, 1H), 7.15 (d, J=3.6 Hz, 1H), 6.94 (d, J=5.8 Hz, 1H), 6.92 (s, 2H), 4.51 (d, J=6.0 Hz, 2H). MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 7.113 min, Purity 97.99%. HRMS (ESI−ve) calculated for C20H18N5O (M+H)+ 344.1505. found 344.1514




1-(2-aminopyrimidin-4-yl)-N-phenethyl-1H-indole-4-carboxamide (24c) This was obtained from 2-amino-4-chloropyrimidine (0.672 g, 0.517 mmol), and 23d (0.187 g, 0.708 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with CH3CN, filtered and dried under vacuum. Pure 24c (0.144 g, 0.402 mmol, 72%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) 8.94 (d, J=8.4 Hz, 1H), 8.47 (t, J=5.6 Hz, 1H), 8.25 (d, J=5.7 Hz, 1H), 8.11 (d, J=3.7 Hz, 1H), 7.49 (d, J=7.3 Hz, 1H), 7.31-7.25 (m, 5H), 7.21-7.18 (m, 1H), 7.06 (d, J=3.6 Hz, 1H), 6.95 (d, J=5.8 Hz, 1H), 6.91 (s, 2H), 3.52 (q, J=6.0 Hz, 1H), 2.88 (t, J=7.4 Hz, 2H). MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min: Rt 4.087 min, Purity 92.23%. HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1670




N-(1-(2-aminopyrimidin-4-yl)-1H-indol-5-yl)benzamide (27b) This was obtained from 2-amino-4-chloropyrimidine (0.046 g, 0.355 mmol), and 26a (0.123 g, 0.521 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded pure 27b (0.060 g, 0.182 mmol, 51%) as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.25 (s, 1H), 8.78 (d, J=9.1 Hz, 1H), 8.23 (d, J=5.7 Hz, 1H), 8.15 (s, 1H), 8.06 (d, J=3.7 Hz, 1H), 7.97-7.95 (m, 1H), 7.58-7.52 (m, 4H), 6.93 (d, J=5.8 Hz, 1H), 6.88 (s, 2H), 6.76 (d, 1H, J=3.7 Hz, 1H). HPLC: Purity 98.93%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 8.007 min, HRMS (ESI−ve) calculated for C19H16N5O (M+H)+ 330.1349, found 330.1349




N-(1-(2-aminopyrimidin-4-yl)-1H-indol-5-yl)-2-phenylacetamide (27a). This was obtained from 2-amino-4-chloropyrimidine (0.104 g, 0.802 mmol), and 26c (0.301 g, 1.20 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded 27a as an off white solid. CH3CN was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 27a was obtained (0.040 g, 0.116 mmol, 15%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.15 (s, 1H), 8.72 (d, J=8.9 Hz, 1H), 8.21 (d, J=5.7 Hz, 1H), 8.02 (d, J=3.6 Hz, 1H), 7.98 (d, J=2.1 Hz, 1H), 7.37-7.29 (m, 4H), 7.25-7.21 (m, 1H), 6.90 (d, J=5.8 Hz, 1H), 6.85 (s, 2H), 6.71 (d, J=3.6 Hz, 1H), 3.64 (s, 2H). HPLC: Purity 95.87%, MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min, Rt 3.963 min, HRMS (ESI−ve) calculated for C20H18N5O (M+H)+ 344.1505, found 344.1516




N-(1-(2-aminopyrimidin-4-yl)-1H-indol-5-yl)-3-phenylpropanamide (27c) This was obtained from 2-amino-4-chloropyrimidine (0.072 g, 0.555 mmol), and 26a (0.219 g, 0.829 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/MeOH) afforded 27c as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 27c was obtained (0.058 g, 0.162 mmol, 29%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.89 (s, 1H), 8.71 (d, J=4.5 Hz, 1H), 8.21 (d, J=5.7 Hz, 1H), 8.02 (d, J=3.7 Hz, 1H), 7.99 (d, J=1.8 Hz, 1H), 7.32-7.19 (m, 4H), 7.19-7.14 (m, 1H), 6.90 (d, J=5.8 Hz, 1H), 6.84 (s, 2H), 6.72 (d, J=3.5 Hz, 1H), 2.92 (t, J=7.6 Hz, 2H), 2.62 (t, J=7.8 Hz, 2H). HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1664.




1-(2-aminopyrimidin-4-yl)-N-phenyl-1H-indole-5-carboxamide (24f) This was obtained from 2-amino-4-chloropyrimidine (0.052 g, 0.401 mmol), and 23b (0.114 g, 0.483 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded pure 24f (0.014 g, 0.042 mmol, 11%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.26 (s, 2H), 8.89 (d, J=8.8 Hz, 1H), 8.29-7.27 (m, 2H), 8.18 (d, J=3.8 Hz, 1H), 7.86 (dd, J=1.8, 8.7 Hz, 1H), 7.80-7.78 (m, 1H), 7.36-7.32 (m, 2H), 7.09-7.05 (m, 1H), 6.99 (d, J=5.8 Hz, 1H), 6.96 (s, 2H), 6.92 (d, J=3.5 Hz, 1H). HPLC: Purity 96.46%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 9.440 min. HRMS (ESI−ve) calculated for C19H16N5O (M+H)+ 330.1349, found 330.1343




1-(2-aminopyrimidin-4-yl)-N-benzyl-1H-indole-5-carboxamide (24e) This was obtained from 2-amino-4-chloropyrimidine (0.042 g, 0.416 mmol), and 23c (0.124 g, 0.486 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with CH3CN, filtered and dried under vacuum. Pure 24e (0.083 g, 0.241 mmol, 58%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.05 (t, J=6.0 Hz, 1H), 8.82 (d, J=8.9 Hz, 1H), 8.27 (d, J=5.7 Hz, 1H), 8.20 (d, J=1.5 Hz, 1H), 8.14 (d, J=3.7 Hz, 1H), 7.81 (dd, J=1.8, 8.8 Hz, 1H), 7.32-7.29 (m, 4H), 7.25-7.20 (m, 1H), 6.97 (d, J=5.8 Hz, 1H), 6.94 (s, 2H), 6.86 (d, J=3.2 Hz, 1H), 4.50 (d, J=6.0 Hz, 1H). HRMS (ESI−ve) calculated for C20H18N5O (M+H)+ 344.1505, found 344.1515




1-(2-aminopyrimidin-4-yl)-N-phenethyl-1H-indole-5-carboxamide (24d) This was obtained from 2-amino-4-chloropyrimidine (0.051 g, 0.393 mmol), and 23a (0.146 g, 0.553 mmol) in a similar manner as described for 15c. After cooling to room temperature, the reaction mixture diluted with water and extracted with AcOEt. The organic extract was dried over Na2SO4 and the solvent removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/hexane) afforded 24d as an off white solid. Water was added to the obtained solid and the solid precipitate was filtered, washed with water and dried in vacuo. Pure 24d was obtained (0.025 g, 0.070 mmol, 19%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.81 (d, J=8.8 Hz, 1H), 8.56 (t, J=5.9 Hz, 1H), 8.27 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 8.11 (d, J=1.5 Hz, 1H), 7.74 (dd, J=1.7, 8.9 Hz, 1H), 7.30-7.23 (m, 4H), 7.20-7.16 (m, 1H), 6.96 (d, J=5.7 Hz, 1H), 6.94 (s, 2H), 6.85 (d, J=3.7 Hz, 1H), 3.51-3.46 (m, 2H), 2.85 (t, J=7.2 Hz, 2H). HPLC: Purity 85.18% MeOH 60%, (0.1% TFA in H2O) 40%, 20 min, Flow 1 ml/min, Rt 4.687 min, HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1674.




1-(2-aminopyrimidin-4-yl)-N-(2-chlorobenzyl)-1H-indole-4-carboxamide (30a) A mixture of 2-amino-4-chloropyrimidine (0.037 g, 0.285 mmol), 29d (0.121 g, 0.424 mmol) and Cs2CO3 (0.308 g) in anhydrous DMF (0.4 ml) was stirred in a Biotage microwave reactor for 30 min at 150° C. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30a (0.072 g, 0.190 mmol, 69%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.02-8.98 (m, 2H), 8.26 (d, J=5.7 Hz, 1H), 8.14 (d, J=3.7 Hz, 1H), 7.68 (d, J=7.5 Hz, 1H), 7.46 (dd, J=1.6, 7.6 Hz, 1H), 7.41 (dd, J=1.6, 7.1 Hz, 1H), 7.36-7.26 (m, 3H), 7.16 (d, J=3.8 Hz, 1H), 6.95 (d, J=5.7 Hz, 1H), 6.94 (s, 2H), 4.57 (d, J=5.7 Hz, 2H). HPLC: Purity 97.81%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 12.807 min, Purity 97.91%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 13.007 min, HRMS (ESI−ve) calculated for C20H17N5OCl (M+H)+ 378.1116, found 378.1115.




1-(2-aminopyrimidin-4-yl)-N-(2-fluorobenzyl)-1H-indole-4-carboxamide (30k) This was obtained from 2-amino-4-chloropyrimidine (0.057 g, 0.439 mmol), and 29c (0.171 g, 0.638 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30k (0.113 g, 0.312 mmol, 71%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.98-8.95 (m, 2H), 8.26 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 7.63 (d, J=6.7 Hz, 1H), 7.42-7.39 (m, 1H), 7.35-7.26 (m, 2H), 7.20-7.13 (m, 3H), 6.94 (d, J=5.8 Hz, 1H), 6.92 (s, 2H), 4.54 (d, J=6.0 Hz, 2H). HPLC: Purity 98.68%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 7.573 min, Purity 99.00%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 7.933 min, HRMS (ESI−ve) calculated for C20H17N5OF (M+H)+ 362.1411, found 362.1407.




1-(2-aminopyrimidin-4-yl)-N-(3-chlorobenzyl)-1H-indole-4-carboxamide (30c) This was obtained from 2-amino-4-chloropyrimidine (0.036 g, 0.277 mmol), and 29f (0.114 g, 0.400 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30c (0.048 g, 0.127 mmol, 46%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.04 (t, J=5.7 Hz, 1H), 8.99 (d, J=8.4 Hz, 1H), 8.26 (d, J=5.7 Hz, 1H), 8.14 (d, J=3.7 Hz, 1H), 7.63 (d, J=7.5 Hz, 1H), 7.40-7.27 (m, 4H), 7.15 (d, J=3.2 Hz, 1H), 6.95 (d, J=5.7 Hz, 1H), 6.93 (s, 2H), 4.50 (d, J=6.1 Hz, 2H). HPLC: Purity 98.68%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 15.520 min, Purity 99.13%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 15.227 min, HRMS (ESI−ve) calculated for C20H17N5OCl (M+H)+ 378.1116, found 378.1113.




1-(2-aminopyrimidin-4-yl)-N-(3-fluorobenzyl)-1H-indole-4-carboxamide (30d) This was obtained from 2-amino-4-chloropyrimidine (0.039 g, 0.301 mmol), and 29e (0.118 g, 0.439 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30d (0.066 g, 0.182 mmol, 60%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.03 (t, J=6.1 Hz, 1H), 8.98 (d, J=8.4 Hz, 1H), 8.26 (d, J=5.7 Hz, 1H), 8.14 (d, J=3.7 Hz, 1H), 7.63 (d, J=7.2 Hz, 1H), 7.42-7.31 (m, 2H), 7.20-7.13 (m, 3H), 7.06 (td, J=8.6, 2.7 Hz, 1H), 6.95 (d, J=5.7 Hz, 1H), 6.92 (s, 2H), 4.52 (d, J=6.0 Hz, 2H). HPLC: Purity 98.78%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 8.333 min, Purity 99.24%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 8.620 min, HRMS (ESI−ve) calculated for C20H17N5OF (M+H)+ 362.1411, found 362.1411.




1-(2-aminopyrimidin-4-yl)-N-(4-chlorobenzyl)-1H-indole-4-carboxamide (30e) This was obtained from 2-amino-4-chloropyrimidine (0.035 g, 0.270 mmol), and 29i (0.113 g, 0.396 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30e (0.079 g, 0.209 mmol, 77%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.02 (t, J=4.8 Hz, 1H), 8.98 (d, J=8.4 Hz, 1H), 8.26 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 7.62 (d, J=7.4 Hz, 1H), 7.40 (d, J=8.9 Hz, 2H), 7.37 (d, J=9.1 Hz, 2H), 7.33 (t, J=7.9 Hz, 1H), 7.15 (d, J=3.6 Hz, 1H), 6.95 (d, J=5.8 Hz, 1H), 6.92 (s, 2H), 4.48 (d, J=6.0 Hz, 2H). HPLC: Purity 99.73%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 16.340 min; Purity 99.91%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 15.560 min. HRMS (ESI−ve) calculated for C20H17N5OCl (M+H)+ 378.1116, found 378.1116




1-(2-aminopyrimidin-4-yl)-N-(4-methoxybenzyl)-1H-indole-4-carboxamide (301) This was obtained from 2-amino-4-chloropyrimidine (0.039 g, 0.301 mmol), and 29g (0.118 g, 0.449 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with CH3CN and dried under vacuum. Pure 301 (0.055 g, 0.147 mmol, 49%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.4 Hz, 1H), 8.91 (t, J=6.1 Hz, 1H), 8.25 (d, J=5.7 Hz, 1H), 8.12 (d, J=3.7 Hz, 1H), 7.59 (d, J=7.0 Hz, 1H), 7.32 (d, J=8.2 Hz, 1H), 7.28 (d, J=8.7 Hz, 2H), 7.14 (d, J=3.6 Hz, 1H), 6.94 (d, J=5.8 Hz, 1H), 6.92 (s, 2H), 6.89 (d, J=8.7 Hz, 2H), 4.43 (d, J=6.0 Hz, 2H), 3.71 (s, 3H). HPLC: Purity 98.32%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 6.807 min, Purity 97.77%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min: Rt 6.987 min, HRMS (ESI−ve) calculated for C21H20N5O2(M+H)+ 374.1611, found 374.1601




1-(2-aminopyrimidin-4-yl)-N-(4-fluorobenzyl)-1H-indole-4-carboxamide (30f) This was obtained from 2-amino-4-chloropyrimidine (0.035 g, 0.270 mmol), and 29h (0.109 g, 0.406 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30f (0.063 g, 0.174 mmol, 65%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.10-8.96 (m, 2H), 8.26 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 7.61 (d, J=7.2 Hz, 1H), 7.40-7.37 (m, 2H), 7.32 (t, J=7.7 Hz, 1H), 7.17-7.13 (m, 3H,), 6.95 (d, J=5.7 Hz, 1H), 6.92 (s, 2H), 4.48 (d, J=6.0 Hz, 2H). HPLC: Purity 98.37%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 8.407 min; Purity 99.08%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min, Rt 8.580 min, HRMS (ESI−ve) calculated for C21H17N5O2F (M+H)+ 362.1411, found 362.1412




1-(2-aminopyrimidin-4-yl)-N-(1-phenylethyl)-1H-indole-4-carboxamide (30g) This was obtained from 2-amino-4-chloropyrimidine (0.040 g, 0.308 mmol), and 29b (0.115 g, 0.435 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30g (0.074 g, 0.207 mmol, 67%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.4 Hz, 1H), 8.81 (d, J=8.2 Hz, 1H), 8.25 (d, J=5.7 Hz, 1H), 8.11 (d, J=3.7 Hz, 1H), 7.63 (d, J=7.1 Hz, 1H), 7.42 (d, J=7.3 Hz, 2H), 7.32 (t, J=7.8 Hz, 3H), 7.21 (t, J=6.7 Hz, 1H), 7.06 (d, J=3.6 Hz, 1H), 6.94 (d, J=5.7 Hz, 1H), 6.92 (s, 2H), 5.20 (quin, J=6.7 Hz, 1H), 1.48 (d, J=7.1 Hz, 3H). HPLC: Purity 99.95%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min, Rt 9.053 min, Purity 99.68%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min: Rt 9.867 min; HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1687




1-(2-aminopyrimidin-4-yl)-N-(3-methoxybenzyl)-1H-indole-4-carboxamide (30b). This was obtained from 2-amino-4-chloropyrimidine (0.079 g, 0.609 mmol), and 29a (0.202 g, 0.720 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30b (0.079 g, 0.212 mmol, 35%) was obtained as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.98-8.95 (m, 2H), 8.26 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 7.62 (d, J=7.4 Hz, 1H), 7.33 (t, J=7.9 Hz, 1H), 7.24 (t, J=8.1 Hz, 1H), 7.15 (d, J=3.6 Hz, 1H), 6.95-6.91 (m, 5H), 6.81-6.79 (m, 1H), 4.48 (d, J=6.0 Hz, 2H), 3.72 (s, 3H). HPLC: Purity 98.10%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 7.153 min; Purity 97.57%, CH3CN 30%, (0.1% TFA in H2O) 70%, 20 min, Flow 1 ml/min: Rt 7.687 min, HRMS (ESI−ve) calculated for C21H20N5O2 (M+H)+ 374.1601. found 374.1601




(R)-1-(2-aminopyrimidin-4-yl)-N-(1-phenylethyl)-1H-indole-4-carboxamide (30h). This was obtained from 2-amino-4-chloropyrimidine (0.051 g, 0.393 mmol), and 291 (0.120 g, 0.454 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30h (0.059 g, 0.165 mmol, 42%) was obtained as an off white solid 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.4 Hz, 1H), 8.82 (d, J=8.2 Hz, 1H), 8.25 (d, J=5.7 Hz, 1H), 8.11 (d, J=3.7 Hz, 1H), 7.62 (d, J=7.4 Hz, 1H), 7.42 (d, J=7.7 Hz, 2H), 7.32 (t, J=7.8 Hz, 3H), 7.23-7.19 (m, 1H), 7.06 (d, J=3.7 Hz, 1H), 6.94 (d, J=5.8 Hz, 1H), 6.92 (s, 2H), 5.19 (quin, J=7.3 Hz, 1H), 1.48 (d, J=7.1 Hz, 3H). HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1654.




1-(2-aminopyrimidin-4-yl)-N-(2-methoxybenzyl)-1H-indole-4-carboxamide. (30i) This was obtained from 2-amino-4-chloropyrimidine (0.050 g, 0.385 mmol), and 20j (0.126 g, 0.449 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30i (0.077 g, 0.206 mmol, 54%) was obtained as an off white solid 1H NMR (400 MHz, DMSO-d6) δ 8.98 (d, J=8.4 Hz, 1H), 8.79 (t, J=6.0 Hz, 1H), 8.26 (d, J=5.7 Hz, 1H), 8.13 (d, J=3.7 Hz, 1H), 7.66 (d, J=6.8 Hz, 1H) 7.33 (t, J=7.7 Hz, 1H), 7.25-7.21 (m, 2H), 7.15 (d, 1H, J=3.3 Hz, 1H), 7.00-6.88 (m, 5H), 4.48 (d, J=5.9 Hz, 2H), 3.83 (s, 3H). HRMS (ESI−ve) calculated for C21H20N5O2 (M+H)+ 374.1611, found 374.1603




(S)-1-(2-aminopyrimidin-4-yl)-N-(1-phenylethyl)-1H-indole-4-carboxamide (30j). This was obtained from 2-amino-4-chloropyrimidine (0.048 g, 0.370 mmol), and 29k (0.130 g, 0.492 mmol) in a similar manner as described for 30a. After cooling to room temperature, the reaction mixture was diluted with water. The solid precipitated was filtered, slurried with methanol, filtered, washed with methanol and dried under vacuum. Pure 30j (0.080 g, 0.224 mmol, 60%) was obtained as an off white solid 1H NMR (400 MHz, DMSO-d6) δ 8.97 (d, J=8.3 Hz, 1H), 8.82 (d, J=8.0 Hz, 1H), 8.26 (d, 1H, J=5.7 Hz, 1H), 8.11 (d, J=3.7 Hz, 1H), 7.63 (d, J=7.3 Hz, 1H), 7.43 (d, J=7.3 Hz, 2H), 7.33 (t, J=7.8 Hz, 3H), 7.23-7.19 (m, 1H), 7.07 (d, J=3.6 Hz, 1H), 6.94 (d, J=5.8 Hz, 1H), 6.93 (s, 2H), 5.21 (quin, J=7.3 Hz, 1H), 1.48 (d, J=7.1 Hz, 3H). HRMS (ESI−ve) calculated for C21H20N5O (M+H)+ 358.1662, found 358.1653.




N-(1-(2-aminopyrimidin-4-yl)-1H-indol-4-yl)-2-(3-methoxyphenyl)acetamide (27d). A mixture of 26d (0.32 g, 0.245 mmol) and 2-amino-4-chloropyrimidine (0.080 g, 0.215 mmol) in anhydrous DMF (0.50 mL) and Cs2CO3 (0.195 g, 0.602 mmol), was heated in the microwave at 150° C. for 30 minutes. After cooling to room temperature, water (3 mL) was added and the solution was filtered. The obtained solid was slurried with acetonitrile, filtered, dried under vacuum to afford pure 27d as an orange solid (0.050 g, 0.134 mmol, 55%), which was dried under vacuum. 1H NMR (400 MHz, DMSO-d6) δ 9.91 (s, 1H), 8.52 (d, J=8.4 Hz, 1H), 8.24 (d, J=5.7 Hz, 1H), 8.02 (d, J=3.8 Hz, 1H), 7.68 (d, J=7.8 Hz, 1H), 7.24 (t, J=7.9 Hz, 1H), 7.18 (t, J=8.1 Hz, 1H), 7.00-6.85 (m, 6H), 6.82 (dd, J=8.6, 2.2 Hz, 1H), 3.74 (s, 5H), 2.07 (s, 2H); HPLC purity 97.38% {tR=7.787 min, Flow 1 ml/min, [(CH3CN/(0.1% TFA in H2O):30/70]}; HRMS (ESI+ve) m/z calculated for C21H19N5O2 (M+H)+ 374.1615, found 374.1605.




N-(3-acetamidobenzyl)-1-(2-aminopyrimidin-4-yl)-1H-indole-4-carboxamide (30n). A mixture of 29p (0.085 g, 0.235 mmol) and 2-amino-4-chloropyrimidine (0.037 g, 0.282 mmol) in anhydrous DMF (0.4 mL) and Cs2CO3 (0.245 g, 0.752 mmol), was heated in the microwave at 150° C. for 45 minutes. After cooling to room temperature. MeOH (5 mL) was added and the solution was filtered. The filtrate was concentrated under reduced pressure. The obtained solid was then washed with water and filtered. Slurry with acetonitrile afforded a brown solid 30n (0.035 g, 0.087 mmol, 37%). 1H NMR (400 MHz, CD3OD) δ 8.90 (d, J=8.5 Hz, 1H), 8.23 (d, J=5.8 Hz, 1H), 7.96 (d, J=3.9 Hz, 1H), 7.69-7.52 (m, 2H), 7.45 (d, J=8.1 Hz, 1H), 7.36 (t, J=7.9 Hz, 1H), 7.29 (t, J=7.8 Hz, 1H), 7.15 (s, 1H), 6.90 (d, J=5.9 Hz, 1H), 2.10 (s, 3H). HPLC purity 96.99% {tR=5.883 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C22H21N6O2 (M+H)+ 401.1720, found 401.1722.




1-(2-aminopyrimidin-4-yl)-N-(3-(methylsulfonamido)benzyl)-1H-indole-4-carboxamide (30m). This was prepared from 29o (0.035 g, 0.097 mmol) and 2-amino-4-chloropyrimidine (0.014 g, 0.111 mmol) in a similar manner as described for preparation of 30n. After cooling to room temperature, water (10 mL) was added and the solid precipitate filtered and dried under vacuum. The obtained solid was slurried with MeOH, filtered, dried under vacuum to afford pure 30m (0.014 g, 0.030 mmol, 32%) as a brown solid. 1H NMR (400 MHz, DMSO-d6) δ 9.72 (s, 1H), 8.97 (d, J=6.9 Hz, 2H), 8.26 (d, J=4.7 Hz, 1H), 8.13 (d, J=3.6 Hz, 1H), 7.63 (d, J=7.6 Hz, 1H), 7.37-7.25 (m, 3H), 7.23 (s, 1H), 7.16 (d, J=2.7 Hz, 1H), 7.09 (d, J=7.1 Hz, 2H), 6.95 (d, J=5.8 Hz, 1H), 6.90 (s, 2H), 4.48 (d, J=5.0 Hz, 2H), 2.97 (s, 4H). HPLC purity 96.92% {tR=4.200 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C21H21N6O3S (M+H)+ 437.1390, found 437.1391.




(R)-1-(2-aminopyrimidin-4-yl)-N-(1-phenylpropyl)-1H-indole-4-carboxamide (30o) This was prepared from 29q (0.036 g, 0.129 mmol) and 2-amino-4-chloropyrimidine (0.020 g, 0.154 mmol) in a similar manner as described for preparation of 30n. After the reaction, water (5 mL) was added and the mixture extracted with ethyl acetate. The organic phase was washed with NaHCO3 (aq., sat.), separated dried (Na2SO4), filtered and concentrated under reduced pressure. Slurry with methanol afforded 30o (0.012 g, 0.032 mmol, 25%) as a white solid. 1H NMR (400 MHz, CD3OD) δ 8.90 (d, J=8.4 Hz, 1H), 8.23 (d, J=5.7 Hz, 1H), 7.95 (d, J=3.4 Hz, 1H), 7.55 (d, J=7.5 Hz, 1H), 7.43 (d, J=7.6 Hz, 2H), 7.38-7.33 (m, 3H), 7.25 (t, J=8.0 Hz, 1H), 7.02 (d, J=3.5 Hz, 1H), 6.90 (d, J=5.9 Hz, 1H), 5.05-5.01 (m, 1H), 1.98-1.89 (m, 1H), 1.02 (t, J=7.3 Hz, 3H). HPLC purity 99.98% {tR=17.167 min, Flow 1 ml/min, [(CH3CN/(0.1% TFA in H2O):30/70]}; HRMS (ESI+ve) m/z calculated for C22H22N5O (M+H)+ 372.1818, found 372.1819.




(S)-1-(2-aminopyrimidin-4-yl)-N-(1-phenylpropyl)-1H-indole-4-carboxamide (3aa) This was prepared from 29r (0.036 g, 0.129 mmol) and 2-amino-4-chloropyrimidine (0.020 g, 0.154 mmol) in a similar manner as described for preparation of 30n. After the reaction, water (5 mL) was added and the mixture extracted with ethyl acetate. The organic phase was washed with NaHCO3 (aq., sat.), separated dried (Na2SO4), filtered and concentrated under reduced pressure. Slurry with methanol afforded 30aa (0.012 g, 0.032 mmol, 25%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.5 Hz, 1H), 8.76 (d, J=7.9 Hz, 1H), 8.25 (d, J=4.1 Hz, 1H), 8.10 (s, 1H), 7.61 (d, J=7.4 Hz, 1H), 7.41 (d, J=6.8 Hz, 2H), 7.32 (t, J=7.3 Hz, 3H), 7.21 (t, J=7.3 Hz, 1H), 7.03 (s, 1H), 6.92 (s, 3H), 5.1-4.75 (m, 1H), 1.86-1.75 (m 2H), 0.91 (t, J=6.4 Hz, 3H). HPLC purity 97.30% {tR=8.967 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):60/40]}; HRMS (ESI+ve) m/z calculated for C22H22N5O (M+H)+ 372.1818, found 372.1816.




(R)-1-(2-aminopyrimidin-4-yl)-N-(2-methoxy-1-phenylethyl)-1H-indole-4-carboxamide (30p) This was prepared from 29s (0.035 g, 0.119 mmol) and 2-amino-4-chloropyrimidine (0.020 g, 0.154 mmol) in a similar manner as described for preparation of 30n. After the reaction, water (5 mL) was added and the mixture extracted with ethyl acetate. The organic phase was washed with NaHCO3 (aq., sat.), separated dried (Na2SO4), filtered and concentrated under reduced pressure. Slurry with acetonitrile afforded 30p (0.012 g, 0.032 mmol, 25%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.98 (d, J=8.1 Hz, 1H), 8.85 (d, J=8.6 Hz, 1H), 8.26 (d, J=5.4 Hz, 1H), 8.13 (d, J=3.6 Hz, 1H), 7.62 (d, J=7.6 Hz, 1H), 7.45 (d, J=7.6 Hz, 2H), 7.34 (t, J=7.7 Hz, 2H), 7.30-7.21 (m, 1H), 7.08 (d, J=3.3 Hz, 1H), 6.95-6.93 (m, 3H) 5.32-5.27 (m, 1H), 3.70 (t, J=8.8 Hz, 1H), 3.55 (dd, J=10.1, 5.4 Hz, 2H). HPLC purity 96.86% {tR=15,600 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C22H21N5O2 (M+H)+ 388.1768, found 388.1766.




1-(2-aminopyrimidin-4-yl)-N-(3-methoxybenzyl)-N-methyl-1H-indole-4-carboxamide (30q) A mixture of 29t (0.062 g, 0.211 mmol), 2-amino-4-chloropyrimidine (0.033 g, 0.253 mmol), and Cs2CO3 (0.206 g, 0.633 mmol) in DMF (0.5 mL) was heated in the Biotage Microwave for 45 min at 150° C. The solvent was then removed under reduced pressure. Chromatography on silica gel, performed using a FlashMaster 3 purification station afforded 30q (0.028 g, 0.074 mmol, 34%) as a tan solid. HRMS (ESI+ve) m/z calculated for C22H21N5O2 (M+H)+ 388.17680, found 388.17691
1H NMR (400 MHz, DMSO-d6, 25° C., two rotamers present) δ 8.88 (d, J=8.0 Hz, 1H), 8.27 (d, J=5.6 Hz, 1H), 8.16 (d, J=3.6 Hz, 1H), 7.37-7.28 (m, 2H), 7.23 (d, J=7.1 Hz, 1H), 6.95 (d, J=6.1 Hz, 3H), 6.89 (d, J=6.4 Hz, 1H), 6.80 (d, J=8.0 Hz, 1H), 6.71 (d, J=14.7 Hz, 1H), 6.59 (d, J=19.5 Hz, 2H), 4.72 (s, 2H), 4.41 (s, 1H), 3.77 (s, 2H), 3.68 (s, 1H), 2.95 (s, 1H), 2.74 (s, 1H), 1.90 (s, 2H).
1H NMR (400 MHz, DMSO-d6, 80° C.) δ 8.75 (d, J=7.7 Hz, 1H), 8.27 (d, J=5.5 Hz, 1H), 8.06 (d, J=3.7 Hz, 1H), 7.30 (q, J=17.0, 8.7 Hz, 2H), 7.21 (d, J=7.4 Hz, 1H), 6.91 (d, J=5.7 Hz, 1H), 6.84 (d, J=8.2 Hz, 2H), 6.66-6.57 (m, 3H), 3.75 (s, 3H), 2.86 (s, 2H), 1.90 (s, 3H).




1-(2-acetamidopyrimidin-4-yl)-N-(3-methoxybenzyl)-1H-indole-4-carboxamide (36) A mixture of acetic anhydride (1.75 mL) and 30b (0.100 g, 0.270 mmol) was refluxed under Argon for 2 hours. The mixture was then cooled to room temperature. The solid precipitate was filtered and washed with ethyl ether, dried under vacuum to afford 36 (0.044 g, 0.106 mmol, 39%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 10.83 (s, 1H), 9.56 (d, J=7.6 Hz, 1H), 9.01 (t, J=5.5 Hz, 1H), 8.63 (d, J=5.7 Hz, 1H), 8.28 (d, J=4.3 Hz, 1H), 7.66 (d, J=8.2 Hz, 1H), 7.56 (d, J=6.1 Hz, 1H), 7.37 (t, J=8.0 Hz, 1H), 7.28-7.20 (m, 2H), 6.98-6.89 (m, 2H), 6.82 (d, J=9.3 Hz, 1H), 4.49 (d, J=5.3 Hz, 1H), 3.74 (s, 2H), 2.21 (s, 2H). HPLC purity 97.88% {tR=15.300 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C23H22N5O3 (M+H)+ 416.1717, found 416.1712.




1-(2-aminopyrimidin-4-yl)-N-(3-(2-methoxyethoxy)benzyl)-1H-indole-4-carboxamide (30r) This was prepared from 29u (0.128 g, 0.395 mmol) and 2-amino-4-chloropyrimidine (0.061 g, 0.474 mmol) in a similar manner as described for preparation of 27d. After cooling to room temperature, the solvent was removed under reduced pressure. Water (5 mL) added and the solid precipitated was filtered and dried under vacuum. The obtained solid was slurried with acetonitrile, filtered, slurried with and methanol, filtered dried under vacuum to 30r (0.082 g, 0.197 mmol, 50%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.98-8.92 (m, 2H), 8.26 (d, J=5.7 Hz, 1H), 8.12 (d, J=3.7 Hz, 1H), 7.62 (d, J=7.4 Hz, 1H), 7.34 (d, J=8.2 Hz, 1H), 7.23 (t, J=8.1 Hz, 1H), 7.15 (d, J=3.7 Hz, 1H), 6.97-6.87 (m, 5H), 6.81 (dd, J=7.8, 2.0 Hz, 1H), 4.48 (d, J=6.0 Hz, 2H), 4.08-4.03 (m, 2H), 3.65-3.60 (m, 2H), 3.27 (s, 3H). HPLC purity 99.15% {tR=9.253 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C23H24N5O3 (M+H)+ 418.1873, found 418.1874.




1-(2-aminopyrimidin-4-yl)-N-(3-ethoxybenzyl)-1H-indole-4-carboxamide (30s) This was prepared from 29v (0.283 g, 0.963 mmol) and 2-amino-4-chloropyrimidine (0.150 g, 1.155 mmol) in a similar manner as described for preparation of 27d. After cooling to room temperature, water (5 mL) added and the solid precipitated was filtered and dried under vacuum. The obtained solid was slurried with methanol, filtered dried under vacuum to a white solid 30s (0.212 g, 0.548 mmol, 57% yield). 1H NMR (400 MHz, DMSO-d6) δ 8.96-8.91 (m, 2H), 8.25 (d, J=5.6 Hz, 1H), 8.11 (d, J=3.6 Hz, 1H), 7.61 (d, J=7.3 Hz, 1H), 7.32 (t, J=7.9 Hz, 1H), 7.22 (t, J=8.0 Hz, 1H), 6.96-6.85 (m, 3H), 6.78 (d, J=8.9 Hz, 1H), 4.46 (d, J=5.9 Hz, 3H), 3.98 (q, J=7.0 Hz, 2H), 1.29 (t, J=6.9 Hz, 2H). HPLC purity 96.39% {tR=3.583 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C22H22N5O2 (M+H)+ 388.1768. found 388.1771.




1-(2-aminopyrimidin-4-yl)-N-(biphenyl-2-ylmethyl)-1H-indole-4-carboxamide (30t) This was prepared from 29w (0.207 g, 0.634 mmol) and 2-amino-4-chloropyrimidine (0.099 g, 0.764 mmol) in a similar manner as described for preparation of 27d. Reaction time: 55 min. After cooling to room temperature, water (10 mL) added and the solid precipitated was filtered and dried under vacuum. The obtained solid was slurried with methanol to afford 30t (0.160 g, 0.381 mmol, 60%) as a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.3 Hz, 1H), 8.85 (t, J=5.6 Hz, 1H), 8.26 (d, J=5.6 Hz, 1H), 8.11 (d, J=3.6 Hz, 1H), 7.60 (d, J=7.5 Hz, 1H), 7.52-7.28 (m, 10H), 7.23 (d, J=7.3 Hz, 1H), 7.12 (d, J=3.5 Hz, 1H), 6.94 (d, J=5.7 Hz, 1H), 6.90 (s, 2H), 4.46 (d, J=5.6 Hz, 2H). HPLC purity 96.23% {tR=8.950 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C26H22N5O (M+H)+ 420.1818, found 420.1824.




1-(2-aminopyrimidin-4-yl)-N-(3-(N-methylacetamido)benzyl)-1H-indole-4-carboxamide (30u) This was prepared from 29x (0.075 g, 0.210 mmol) and 2-amino-4-chloropyrimidine (0.0333 g, 0.252 mmol) in a similar manner as described for preparation of 27d. After cooling to room temperature, the solvents was removed under reduced pressure and the obtained solid was slurried with 10 mL of water (10 mL), filtered and dried under vacuum. The obtained solid was slurried with acetonitrile, filtered, dried under vacuum to afford 30u (0.015 g, 0.036 mmol, 17%) as an off white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.99-8.95 (m, 2H), 8.25 (d, J=5.6 Hz, 1H), 8.12 (d, J=3.7 Hz, 1H), 7.62 (d, J=7.1 Hz, 1H), 7.41-7.27 (m, 4H), 7.19 (d, J=7.6 Hz, 1H), 7.13 (d, J=3.6 Hz, 1H), 6.94 (d, J=5.7 Hz, 1H), 6.90 (s, 2H), 4.53 (d, J=6.0 Hz, 2H), 3.11 (s, 3H), 1.75 (s, 3H). HPLC purity 98.11% {tR=8.033 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C23H21N6O2 (M+H)+ 415.1877. found 415.1872.




1-(2-aminopyrimidin-4-yl)-N-(3-(2-oxopyrrolidin-1-yl)benzyl)-1H-indole-4-carboxamide (30v) This was prepared from 29y (0.086 g, 0.258 mmol) and 2-amino-4-chloropyrimidine (0.040 g, 0.310 mmol) in a similar manner as described for preparation of 27d. After cooling to room temperature, water (10 mL) added and the solid precipitated was filtered and dried under vacuum. The obtained solid was slurried with ethyl acetate afforded an off white solid 30v (0.054 g, 0.127 mmol, 49%). 1H NMR (400 MHz, DMSO-d6) δ 8.98-8.94 (m, 2H), 8.25 (d, J=5.6 Hz, 1H), 8.12 (d, J=3.7 Hz, 1H), 7.68 (s, 1H), 7.62 (d, J=7.4 Hz, 1H), 7.49 (d, J=8.2 Hz, 1H), 7.32 (td, J=8.0, 3.1 Hz, 2H), 7.16 (d, J=3.4 Hz, 1H), 7.12 (d, J=7.2 Hz, 1H), 6.94 (d, J=5.7 Hz, 1H), 6.89 (s, 2H), 4.50 (d, J=5.9 Hz, 2H), 3.80 (t, J=7.0 Hz, 2H), 2.03 (quin, J=7.6 Hz, 2H). HPLC purity 98.11% {tR=9.317 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):40/60]}; HRMS (ESI+ve) m/z calculated for C24H23N6O2 (M+H)+ 427.1877, found 427.1887.




(R)-1-(2-aminopyrimidin-4-yl)-N-(1-(3-methoxyphenyl)ethyl)-1H-indole-4-carboxamide (30w) This was prepared from 29m (0.131 g, 0.445 mmol) and 2-amino-4-chloropyrimidine (0.051 g, 0.393 mmol) in a similar manner as described for preparation of 30a. After cooling to room temperature, the reaction mixture diluted with water (10 ml) and extracted with ethyl acetate (2×10 ml). The combined organic extracts were dried over Na2SO4 and the solvent removed under reduced pressure to provide an off white solid. The obtained solid was slurried with methanol (3 ml), filtered, washed with methanol and dried under vacuum to afford pure 30w as a white solid (0.063 g, 0.162 mmol, 41%). 1H NMR (400 MHz, DMSO-d6) δ 8.95 (d, J=8.4 Hz, 1H), 8.77 (d, J=8.2 Hz, 1H), 8.25 (d, J=5.7 Hz, 1H), 8.10 (d, J=3.7 Hz, 1H), 7.61 (d, J=7.6 Hz, 1H), 7.23 (t, J=8.1 Hz, 1H), 7.23 (t, J=8.1 Hz, 1H), 7.06 (d, J=3.6 Hz, 1H), 7.02-6.98 (m, 2H), 6.93 (d, J=5.7 Hz, 1H), 6.90 (s, 1H), 6.79 (m, 1H), 5.16 (quin, J=7.5 Hz, 1H), 3.71 (s, 3H), 1.46 (d, J=7.0 Hz, 2H). HPLC purity 98.33% {tR=6.750 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C22H22N5O2 (M+H)+ 388.1768, found 388.1769.




(S)-1-(2-aminopyrimidin-4-yl)-N-(1-(3-methoxyphenyl)ethyl)-1H-indole-4-carboxamide (30z) This was prepared from 29n (0.151 g, 0.513 mmol) and 2-amino-4-chloropyrimidine (0.058 g, 0.447 mmol) in a similar manner as described for preparation of 30a. After cooling to room temperature, the reaction mixture diluted with water (10 ml) and extracted with ethyl acetate (2×10 ml). The combined organic extracts were dried over Na2SO4 and the solvent removed under reduced pressure to provide an off white solid. The obtained solid was slurried with methanol (3 ml), filtered, washed with methanol and dried under vacuum to afford pure 30z as a white solid (0.087 g, 0.224 mmol, 50%). 1H NMR (400 MHz, DMSO-d6) δ 8.96 (d, J=8.5 Hz, 1H), 8.79 (d, J=8.0 Hz, 1H), 8.25 (d, J=5.6 Hz, 1H), 8.11 (d, J=3.8 Hz, 1H), 7.61 (d, J=7.5 Hz, 1H),), 7.23 (t, J=7.8 Hz, 1H), 7.25-7.21 (m, 1H), 7.06 (d, J=3.8 Hz, 1H), 7.01-6.97 (m, 2H), 6.94 (d, J=5.7 Hz, 1H), 6.92 (s, 2H), 6.82-6.76 (m, 1H), 5.34-5.08 (m, 1H), 3.72 (s, 3H), 1.46 (d, J=7.0 Hz, 3H). HPLC purity 97.92% {tR=6.700 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C22H22N5O2 (M+H)+ 388.1768, found 388.1765.




4-(2-aminopyrimidin-4-yloxy)benzamide (10c). A mixture of 2-amino-4-chloropyrimidine (0.092 g, 0.715 mmol), 4-hydroxybenzamide (0.108 g, 0.787 mmol) in water (2.5 ml) was stirred in a Biotage microwave reactor for 10 min at 165° C. in presence of aq. KOH (2M, 0.392 ml). After cooling to room temperature, the precipitate was filtered, washed with cold water, and dried under vacuum. Pure 10c (0.062 g, 0.269 mmol, 38%) as an a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.11 (d, J=5.5 Hz, 1H), 7.97 (s, 1H), 7.90 (d, J=8.4 Hz, 2H), 7.36 (s, 1H), 7.21 (d, J=8.5 Hz, 2H), 6.64 (s, 2H), 6.15 (d, J=5.5 Hz, 1H). HRMS (ESI+ve) calculated for C11H11N4O2 (M+H)+ 231.0876, found 231.0877.




4-(2-aminopyrimidin-4-yloxy)benzenesulfonamide (10b). This was obtained from 2-amino-4-chloropyrimidine (0.069 g, 0.535 mmol), 4-hydroxybenzenesulfonamide (0.102 g, 0.588 mmol), in a similar manner as described for 10c. After cooling to room temperature, the solid precipitate was filtered, washed with water, further slurried with a solution methanol/water (50/50), filtered and dried under vacuum (0.018 g). The methanolic solution was concentrated to dryness. The obtained solid was slurried with water filtered and dried under vacuum (0.025 g). The two batches were combined to provide pure 10b (0.043 g, 0.141 mmol, 30%) as a white solid. 1H NMR (400 MHz, CD3OD) δ 8.11 (d, J=6.3 Hz, 1H), 7.95 (d, J=8.9 Hz, 2H), 7.31 (d, J=7.3 Hz, 2H), 6.26 (d, J=5.1 Hz, 1H), HRMS (ESI+ve) calculated for C01H11N4O2S (M+H)+ 267.0546. found 267.0550




4-phenoxypyrimidin-2-amine (10a). This was obtained from 2-amino-4-chloropyrimidine (0.161 g, 1.71 mmol), phenol (0.201 g, 1.55 mmol), in a similar manner as described for 10c. After cooling to room temperature, the precipitate was filtered, washed with cold water, further slurried with a solution methanol/ether (50/50), filtered and dried under vacuum. Pure 10a (0.136 g, 0.724 mmol, 47%) as an a white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.08 (d, 1H, J=5.6 Hz, 1H), 7.40 (t, J=7.6 Hz, 2H), 7.22 (t, J=7.9 Hz, 1H), 7.13 (d, J=8.5 Hz, 2H), 6.60 (s, 2H), 6.06 (d, J=5.6 Hz, 1H). HRMS (ESI+ve) calculated for C10H10N3O (M+H)+ 188.0818, found 188.0839




1-(2-chloropyrimidin-4-yl)indoline hydrochloride (32). A mixture of 2,4-dichloropyrimidine (0.165 g, 1.10 mmol), indoline (0.131 g, 1.10 mmol) in aq. HCl (0.1M, 3 ml) was stirred in a Biotage microwave reactor for 30 min at 100° C. After cooling to room temperature, the precipitate was filtered, washed with water, ether, and dried under vacuum. The obtained solid was slurried with methanol, filtered and dried under vacuum (0.029 g). The methanolic solution was concentrated to dryness. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 32 (0.055 g). The two batches were combined to afford pure 32 (0.085 g, 0.313 mmol, 28%) as an off white solid 1H NMR (400 MHz, DMSO-d6) δ 8.29 (d, J=6.7 Hz, 1H), 8.26 (d, J=7.3 Hz, 1H), 7.28 (d, J=7.5 Hz, 1H), 7.23 (t, J=8.1 Hz, 1H), 7.01 (t, J=7.4 Hz, 1H), 6.84 (d, J=6.0 Hz, 1H), 4.05 (t, J=8.5 Hz, 2H), 3.21 (t, J=8.5 Hz, 2H), HRMS (ESI+ve) calculated for C12H11N3Cl (M+H)+ 232.0636, found 232.0645




4-(indolin-1-yl)-N-phenylpyrimidin-2-amine (33). A mixture of 32 (0.044 g, 0.164 mmol), aniline (0.015 g, 0.164 mmol) in aq. HCl (0.1M, 0.7 ml) was stirred in a Biotage microwave reactor for 15 min at 160° C. After cooling to room temperature, DIPEA (1.5 ml) was added. The solvent was removed under reduced pressure. The obtained solid was slurried with water, filtered, dried under vacuum, washed with a solution hexane/DCM (11/2), dried under vacuum. Pure 33 (0.027 g, 0.093 mmol, 57%) was obtained as a yellow solid. 1H NMR (400 MHz, DMSO-d6) δ 9.22 (s, 1H), 8.44 (d, J=8.9 Hz, 1H), 8.14 (d, J=5.9 Hz, 1H), 7.72 (d, J=8.1 Hz, 2H), 7.26 (t, J=7.8Hz, 2H), 7.21 (d, J=6.8 Hz, 1H), 7.11 (t, J=7.6 Hz, 1H), 6.94-6.89 (m, 2H), 6.27 (d, J=5.9 Hz, 1H), 4.01 (t, J=8.6 Hz, 2H), 3.18 (t, J=8. Hz, 2H), HRMS (ESI+ve) calculated for C18H17N4 (M+H)+ 289.1447, found 289.1449.




N4-(2-chlorophenyl)pyrimidine-2,4-diamine (1bi). A mixture of 2-amino-4-chloropyrimidine (0.460 g, 3.55 mmol), 2-chloroaniline (0.544 g, 4.26 mmol) EtOH (3.5 ml) was stirred in a Biotage microwave reactor for 20 min at 150° C. After cooling to room temperature, the solvent was removed under reduced pressure and the crude material was diluted with MeOH (10 mL), followed by the addition of Et3N (1.5 ml). The solvent was then removed under reduced pressure. Water (10 mL) was added and the solid precipitated was filtered, washed with water (10 mL), dried under vacuum to provide 1bi (0.640 g, 2.89 mmol, 82%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.51 (s, 1H), 7.87 (d, J=8.2 Hz, 1H), 7.79 (d, J=5.6 Hz, 1H), 7.45 (d, J=8.0 Hz, 1H), 7.29 (t, J=7.8 Hz, 1H), 7.10 (t, J=7.7 Hz, 1H), 6.12 (s, 2H), 6.03 (d, J=5.7 Hz, 1H); HPLC: Purity 98.37%, MeOH 40%, (0.1% TFA in H2O) 60%, 20 min, Flow 1 ml/min: Rt 4.467 min. HRMS (ESI−ve) calculated for C10H10N4 (M+H)+ 221.0588, found 221.0587.




N4-(3-chlorophenyl)pyrimidine-2,4-diamine (1bj). This was obtained from 2-amino-4-chloropyrimidine (0.495 g, 3.82 mmol), 3-chloroaniline (0.625 g, 3.82 mmol), in a similar manner as described for 1bi. After cooling to room temperature, the solvent was removed under reduced pressure and the obtained solid was triturated with AcOEt (15 mL), filtered, washed with AcOEt (5 mL×2), dried, suspended in a saturated solution of aq. sat. NaHCO3 (15 mL). The mixture was sonicated at room temperature, filtered, washed with aq. sat. NaHCO3 (15 mL), water (10 mL), dried under vacuum to provide 1bj (0.692 g, 3.13 mmol, 82%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 9.28 (s, 1H), 7.90 (t, J=2.0 Hz, 1H), 7.82 (d, J=5.7 Hz, 1H), 7.61 (dd, J=8.3, 1.2 Hz, 1H), 7.25 (t, J=8.1 Hz, 1H), 6.95 (dd, J=7.7, 1.7 Hz, 1H), 6.30 (s, 2H), 5.98 (d, J=5.6 Hz, 1H). HPLC: Purity 98.84%, MeOH 50%, (0.1% TFA in H2O) 50%, 20 min, Flow 1 ml/min: Rt 4.347 min. HRMS (ESI−ve) calculated for C10H10N4 (M+H)+ 221.0588. found 221.0587.




1-(2-aminopyrimidin-4-yl)-N-(3-methoxybenzyl)indoline-4-carboxamide (13r) A mixture of 2-amino-4-chloropyrimidine (0.033 g, 0.254 mmol), 12f (0.115 g, 0.403 mmol) in EtOH (0.7 ml) was stirred in a Biotage microwave reactor for 30 min at 120° C. After cooling to room temperature, the solvent was removed under reduced pressure. Acetone was added and the solid precipitated was filtered, washed with acetone (3 ml×2), hexane (3 ml×2), dried under vacuum. The obtained solid was then suspended in an aq. sat. solution of NaHCO3 (3 ml). The solid precipitate was filtered, washed with water (3 ml×2), acetone (1.5 ml×2), hexane (5 ml×2), dried under vacuum to provide 13r (0.054 g, 0.143 mmol, 56%) as an off-white solid. 1H NMR (400 MHz, DMSO-d6) δ 8.83 (t, J=6.0 Hz, 1H), 8.68 (quin, J=3.9 Hz, 1H), 7.95 (d, J=5.8 Hz, 1H), 7.25-7.20 (m, 3H), 6.89-6.87 (m, 2H), 6.80-6.78 (m, 1H), 6.37 (s, 2H), 6.00 (d, J=5.9 Hz, 1H), 4.41 (d, J=6.0 Hz, 2H), 3.94 (t, J=8.7 Hz, 2H), 3.72 (s, 2H), 3.36 (t, J=8.7 Hz, 2H). HRMS (ESI−ve) calculated for C21H22N5O2(M+H)+ 376.1768, found 376.1765.




1-(2,6-diaminopyrimidin-4-yl)-N-(3-methoxybenzyl)-1H-indole-4-carboxamide (38) This was prepared from 29a (0.171 g, 0.610 mmol) and 6-chloropyrimidine-2,4-diamine (0.070 g, 0.484 mmol) in a similar manner as described for preparation of 30a. After cooling to room temperature, the solvent was removed under reduced pressure. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 38 as an off white solid. The obtained solid was slurried with ether, filtered, and dried in vacuo. Pure 38 was obtained (0.008 g, 0.020 mmol, 4%) as an off-white solid.1 1H NMR (400 MHz, DMSO-d6) δ 8.92 (t, J=6.1 Hz, 1H), 8.59 (d, J=8.4 Hz, 1H), 7.86 (d, J=3.5 Hz, 1H), 7.56 (d, J=7.1 Hz, 1H), 7.29-7.21 (m, 2H), 7.07 (d, J=3.6 Hz, 1H), 6.92-6.91 (m, 2H), 6.83-6.78 (m, 1H), 6.45 (s, 2H), 6.24 (s, 2H), 5.92 (s, 1H), 4.47 (d, J=6.1 Hz, 2H), 3.72 (s, 2H).




3-Nitro-N-(3-methoxybenzyl)benzamide (41). A solution of 3-nitrobenzoyl chloride (2.27 g, 12.238 mmol) and 3-methoxybenzylamine (2.015 g, 14.686 mmol) in anhydrous DCM (12 mL) was stirred at room temperature for 1 h in presence of Et3N (1.9 mL). DCM (10 mL) was then added followed by aq. HCl (1M, 15 mL). The mixture was filtered. The filtrate was recovered, the organic phase separated, washed with aq. sat NaHCO3, water, dried (Na2SO4), filtered and the solvent removed under reduced pressure to provide a white solid (3.443 g, 12.026 mmol, 98%). The crude material was used in the next step without further purification. 1H NMR (400 MHz, DMSO-d6) δ 9.40 (s, 1H), 8.71 (d, J=1.6 Hz, 1H), 8.37 (d, J=8.1 Hz, 1H), 8.32 (d, J=8.4 Hz, 1H), 7.78 (t, J=8.9 Hz, 1H), 7.23 (t, J=7.0 Hz, 1H), 6.88-6.76 (m, 3H), 4.47 (d, J=5.7 Hz, 2H), 3.72 (s, 3H).




N-(3-methoxybenzyl)-3-nitrobenzenesulfonamide This was obtained from 3-nitrosulfonyl chloride (2.207 g, 9.958 mmol) and 3-methoxybenzylamine (1.639 g, 11.950 mmol) in a similar manner as described for preparation of 41. Chromatography on silica gel using the FlashMaster 3 purification station (AcOEt/Hexane) afforded 44 (0.770 g, 2.39 mmol, 24%) as a yellow oil. 1H NMR (400 MHz, DMSO-d6) δ 8.52 (t, J=6.3 Hz, 1H), 8.38-8.30 (m, 2H), 8.10 (d, J=7.7 Hz, 1H), 7.78 (t, J=8.0 Hz, 1H), 7.07 (t, J=7.7 Hz, 1H), 6.75-6.52 (m, 3H), 4.05 (d, J=6.3 Hz, 2H), 3.62 (s, 3H). HRMS (ESI+ve) m/z calculated for C14H14N2O5SNa (M+Na)+ 345.0515, found 345.0522.




3-amino-N-(3-methoxybenzyl)benzamide 42. A solution of 41 (0.300 g, 1.048 mmol) in AcOEt (4 mL) was refluxed for 3 h in presence of 5 nCl2.H2O (1.182 g, 5.240 mmol). After cooling to room temperature, AcOEt and aq. sat NaHCO3 were added. The mixture was filtered. The filtrate was collected, the organic phase separated, dried (Na2SO4) and the solvent removed under reduced pressure to provide a brown oil (0.233 g, 0.917 mmol, 88%). The crude material was used in the next step without further purification. 1H NMR (400 MHz, DMSO-d6) δ 8.73 (t, J=5.9 Hz, 1H), 7.19 (t, J=8.1 Hz, 1H), 7.07-7.00 (m, 2H), 6.95 (d, J=7.7 Hz, 1H), 6.83-6.82 (m, 2H), 6.77-6.75 (m, 1H), 6.65 (dd, J=8.2, 1.6 Hz, 1H), 5.18 (s, 2H), 4.36 (d, J=6.0 Hz, 2H), 3.69 (s, 3H).




3-amino-N-(3-methoxybenzyl)benzenesulfonamide (45). This was obtained as a yellow oil (0.204 g, 0.698 mmol, 75%) from 44 (0.300 g, 0.931 mmol) in a similar manner as described for preparation of 42. The crude material was used in the next step without further purification. 1H NMR (400 MHz, DMSO-d6) δ 7.86 (t, J=6.2 Hz, 1H), 7.15-7.10 (m, 2H), 6.96 (s, 1H), 6.85 (d, J=7.6 Hz, 1H), 6.80-6.62 (m, 4H), 5.49 (s, 2H), 3.85 (d, J=6.1 Hz, 1H), 3.64 (s, 3H).




3-(2-aminopyrimidin-4-ylamino)-N-(3-methoxybenzyl)benzenesulfonamide (47) This was prepared from 45 (0.204 g, 0.698 mmol) and 2-amino-4-chloropyrimidine (0.091 g, 0.698 mmol) in a similar manner as described for preparation of 1ae. After cooling to room temperature the solid precipitate was filtered, washed with methanol, and dried under vacuum. The obtained solid was dissolved in ethyl acetate the mixture was then washed with an aq. sat. solution of NaHCO3. The organic phase was separated, dried (Na2SO4), filtered and the solvent removed under reduced pressure. The obtained solid was slurried with methanol, filtered, dried under vacuum to provide pure 47 as an white solid (0.026 g, 0.063 mmol, 10%). 1H NMR (400 MHz, DMSO-d6) δ 9.41 (s, 1H), 8.13 (s, 2H), 8.02 (d, J=7.8 Hz, 1H), 7.83 (d, J=5.3 Hz, 1H), 7.42 (t, J=7.8 Hz, 1H), 7.31 (d, J=7.2 Hz, 1H), 7.15 (t, J=7.6 Hz, 1H), 6.81-6.73 (m, 3H), 6.25 (s, 2H), 6.00 (d, J=5.3 Hz, 1H), 3.95 (d, J=5.6 Hz, 3H), 3.65 (s, 3H). HPLC purity 98.01% {tR=12.000 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/60]}; HRMS (ESI+ve) m/z calculated for C18H20N5O3S (M+H)+ 386.1281, found 386.1280.




3-(2-aminopyrimidin-4-ylamino)-N-(3-methoxybenzyl)benzamide hydrochloride (46) This was prepared from 42 (0.233 g, 0.917 mmol) and 2-amino-4-chloropyrimidine (0.120 g, 0.917 mmol) in a similar manner as described for preparation of 1ae. After cooling to room temperature, ethyl acetate was added and the solid precipitated was filtered, washed with water and dried under vacuum. Pure 46 was obtained as a white solid (0.134 g, 0.386 mmol, 42%). 1H NMR (400 MHz, DMSO-d6) δ 12.29 (s, 1H), 10.82 (s, 1H), 9.06 (t, J=5.2 Hz, 1H), 8.07 (s, 2H), 7.98 (s, 1H), 7.84 (d, J=7.2 Hz, 1H), 7.67 (d, J=8.0 Hz, 1H), 7.47 (t, J=7.9 Hz, 2H), 7.22 (t, J=8.0 Hz, 1H), 6.87-6.86 (m 2H), 6.79 (d, J=8.7 Hz, 1H), 6.34 (d, J=7.0 Hz, 1H), 4.43 (d, J=5.9 Hz, 2H), 3.70 (s, 3H). HPLC purity 99.32% {tR=5.317 min, Flow 1 ml/min, [(MeOH/(0.1% TFA in H2O):50/50]}; HRMS (ESI+ve) m/z calculated for C19H19N5O3 (M+H)+ 350.16.11. found 350.1608




3-(2-amino-6-methylpyrimidin-4-ylamino)benzenesulfonamide hydrochloride (6). A mixture of 2-amino-6-methyl-4-chloropyrimidine (0.095 g, 0.660 mmol), and 4-aminobenzenesulfonamide (0.113 g, 0.660 mmol) in anhydrous ethanol (0.7 ml) was stirred in a Biotage microwave reactor for 15 min at 160° C. After cooling to room temperature, the solid precipitate was filtered, slurried with methanol and dried under vacuum to afford 6 (0.033 g, 0.105 mmol, 16%) as an off-white solid. 1H NMR (400 MHz, CD3OD) δ δ8.39 (s, 1H), 7.84 (s, 1H), 7.70 (d, J=8.2 Hz, 1H), 7.55 (t, J=7.9 Hz, 1H), 6.16 (s, 1H), 2.34 (s, 3H). HRMS (ESI+ve) calculated for C11H15N5O2S (M+H—Cl)+ 280.0862, found 280.0867.
All patents, patent applications, provisional applications, and publications referred to or cited herein are incorporated by reference in their entirety, including all figures and tables, to the extent they are not inconsistent with the explicit teachings of this specification.
It should be understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and the scope of the appended claims. In addition, any elements or limitations of any invention or embodiment thereof disclosed herein can be combined with any and/or all other elements or limitations (individually or in any combination) or any other invention or embodiment thereof disclosed herein, and all such combinations are contemplated with the scope of the invention without limitation thereto.
EXAMPLE
Crystal Structure of Human Rock1 with RPM1510
To experimentally determine the mode of action of the aminopyrimidineindole containing ROCK1 inhibitor series, we co-crystallized RPM1510 (also shown as compound 30b herein) with the kinase domain of human ROCK1 (residues 6-415). The ROCK1-RPM1510 complex crystallized in space group C2221 with two dimers per asymmetric unit. The structure was refined to 3.25 Å resolution with current Rcryst and Rfree values of 22.5% and 29.1%, respectively (Table 3). The inhibitor binds to the ATP site of ROCK1 through hydrogen bonding interactions between the aminopyrimidne moiety and the main chain of residue Met156 of the hinge region (FIG. 6). In addition, the amide functionality adjacent to the indole ring establishes a single hydrogen bond with Asp216 of the DFG motif. The m-methoxy-phenyl ring is sandwiched between the P-loop (Arg84-Gly88) of the upper N-terminal lobe and the side chain of the catalytic residue Lys 105. RPM 1510 is further stabilized through a series of van der Waals (hydrophobic) interactions with Gly88, Val90, Ala103, Lys105, Leu107, Met128, Met153, Leu205, Ala215, and Asp216.







TABLE 3







Summary of data collection and structure refinement










Structure
ROCK1-RPM1510











Data Collection










Wavelength (Å)
1.54



Space group
C2221



Unit cell dimensions (Å)
a = 147.39




b = 153.27




c = 205.24











Resolution range
20-3.25
(3.3-3.25)



Unique reflections
36456
(1629)



Completeness (%)
98.7
(99.3)



I/σI
21.3
(3.9)



Rmergea (%)
7.8
(42.3)







Structure refinement











Protein atoms
12888
(2 dimers)










Average B-factor (Å2)
95



Ligand atoms
56



Average B-factor (Å2)
98



Solvent molecules
14



Average B-factor (Å2)
39



r.m.s.d.b bonds (Å)
0.011



r.m.s.d.angles (°)
1.4



Rcrystc (%)
22.5



Rfreed (%)
29.1











Rfree reflection set size
1094
(3.0%)










Coordinate error (Å)
0.47







aRmerge = quality of amplitudes (F) in the scaled data set (Diederichs & Karplus (1997), Nature Struct. Biol. 4, 269-275).



br.m.s.d. = root mean square deviation from ideal values.



cRcryst = 100 × Σ | Fobs − Fmodel |/Fobs where Fobs and Fmodel are observed and calculated structure factor amplitudes, respectively.



dRfree is Rcryst calculated for randomly chosen unique reflections, which were excluded from the refinement.






MATERIALS AND METHODS
Reagents and compounds. Reagents and compounds were purchased from Sigma-Aldrich (St. Louis, Mo.) and Hampton Research unless otherwise indicated. The concentration of crystallization grade proteins was determined by A280 molar absorbance using a nanodrop ND-1000 spectrophotometer (Nanodrop Technologies).
Cloning and expression. The gene for human ROCK1 (comprising residues 6-415) was custom-synthesized, cloned into the pFB-Dual-PBL bacmid to provide an N-terminal His-Puritin-tag, and over-expressed in SF9 insect cells after 72 h infection (BlueSky, Worcester, Mass.).
Enzyme purification. Harvested cells were resuspended in 100 mM Na/K phosphate buffer (pH 7.4) containing 300 mM NaCl, 10 mM MgCl2, 10 mM imidazole, and 0.01% Triton X-100 at 4° C. for 1 h. After sonication and centrifugation (1 h at 29000×g), the supernatant was purified by Ni2+ affinity column chromatography (GE LifeSciences, Piscataway, N.J.). Following incubation of peak fractions with TEV protease (20:1) at 4° C., the cleaved His-Puritin-tag was separated using a Superdex 75 26/60 column (GE LifeSciences), and eluted with 50 mM HEPES buffer (pH 7.4) containing 150 mM NaCl, 10 mM MgCl2, and 1 mM DTT. Purified ROCK1 was exchanged into 50 mM HEPES buffer (pH 7.4) containing 1 mM DTT and concentrated to 20 mg mL−1 prior to crystallization.
Protein crystallography. Crystallization was performed at 18° C. using the sitting drop vapor-diffusion method. Crystals of the ROCK1-RPM1510 complex were grown from 0.1 M HEPES (pH 7.4), 5% tacsimate (pH 7.0), and 10% PEG 5000 MME, in the presence of 1 mM inhibitor. Crystals were harvested in cryo-protectant mixture (reservoir solution including 25% (v/v) ethylene glycol and 1 mM inhibitor) and a complete data set was recorded at −180° C. using CuKa radiation generated by a Rigaku Micro-Max 007-HF rotating anode (MSC, The Woodlands, Tex.) using a CCD Saturn 944+ in the Moffitt Structural Biology Core facility. Data were reduced with XDS (Kabsch, 1993), the structure was solved by molecular replacement using the MolRep program from CCP4 (Acta Crystallogr D Biol Crystallogr, 1994) with pdb 3TWJ as a starting model. PHENIX (Adams et al., 2010) was employed for refinement, and model building was performed using Coot (Emsley et al., 2004). Figures were prepared using PyMol (Schrödinger, LLC). 



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## Claims

1. A compound having the chemical structure shown in formula I, formula IIa, formula IIb, formula III, or formula IV:



wherein
R1 in formula I is H, OH, S-alkyl, SO2NR2R3, NO2, CONH2, SO2-alkyl, NHC(O)-alkyl, CO2H, alkyl, cycloalkyl, alkoxy, cycloalkoxy, heterocycloalkyl, alkoxycarbonyl, heteroaryl, or aryl;
R2 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
R3 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
any of which of R1, R2, and R3 can be optionally substituted with one or more of halogen, alkyl, alkoxy or aryl optionally substituted with alkoxy;
R10 in formula IIb is H, NO2, halogen, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
R10 in formula III is H, NO2, —F, —Cl, —I, —CH3,—SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
R10 in formula IIa and formula IV is H, NO2, —F, —Cl, —I, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
R20 in formula III is —CH3, —CO2H, heteroalkyl, aryl, or alkyl;
or a pharmaceutically acceptable salt or hydrate thereof; wherein said compound of formula I comprises one or more R1, wherein said compound of formula IIa, IIb, III, or IV comprises one or more R10, and wherein said compound of formula III comprises one or more R20; or said compound having the chemical structure selected from:

2. A composition comprising a compound, having the chemical structure shown in formula I, formula IIa, formula IIb, formula III, or formula IV:



wherein
R1 in formula I is H, OH, S-alkyl, SO2NR2R3, NO2, CONH2, SO2-alkyl, NHC(O)-alkyl, CO2H, alkyl, cycloalkyl, alkoxy, cycloalkoxy, heterocycloalkyl, alkoxycarbonyl, heteroaryl, or aryl;
R2 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
R3 is H, CO, alkoxy, alkyl, aryl, heteroalkyl, heteroaryl, heterocycloalkyl, alkylcarbonyl, arylcarbonyl, or alkoxycarbonyl;
any of which of R1, R2, and R3 can be optionally substituted with one or more of halogen, alkyl, alkoxy or aryl optionally substituted with alkoxy;
R10 in formula IIb is H, NO2, halogen, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
R10 in formula III is H, NO2, —F, —Cl, —I, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy;
R10 in formula IIa and formula IV is H, NO2, —F, —Cl, —I, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy
R20 in formula III is —CH3, —CO2H, heteroalkyl, aryl, or alkyl;
or a pharmaceutically acceptable salt or hydrate thereof; wherein said compound of formula I comprises one or more R1, wherein said compound of formula IIa, IIb, III, or IV comprises one or more R10, and wherein said compound of formula III comprises one or more R20; or said compound having the chemical structure selected from:

3. The compound according to claim 1, wherein R1 is any of (=point of attachment):










R1 can be:

4. The compound according to claim 1, wherein R10 is any of (=point of attachment):










R10 can be:

5. The compound according to claim 1, wherein the compound has a chemical structure selected from:

6. The compound of claim 1, wherein R10 in formula III is H, NO2, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy.

7. The composition of claim 2, wherein R10 in formula III is H, NO2, —CH3, —SO2-alkyl, —OCH3, alkoxy, —C(O)NH-alkyl, —C(O)NH-aryl, —NHC(O)-alkyl, —NHC(O)-aryl, or aryloxy, any of which can be substituted with one or more of aryl or alkoxy, any of which can be optionally substituted with halogen, —OH, alkoxy, or aryl optionally substituted with alkoxy.

8. The compound of claim 1, wherein R20 in formula III is —CO2H, heteroalkyl, or aryl.

9. The composition of claim 2, wherein R20 in formula III is —CO2H, heteroalkyl, or aryl.