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| ☒ | QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 |
|---------|-----------------------------------------------------------------------------------------|

| ☐ | TRANSITION REPORT UNDER SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 |
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| Delaware                                                      |   | 83-0361454                       |
|---------------------------------------------------------------|--------|----------------------------------|
| (State or other jurisdiction ofincorporation or organization) |   | (IRS EmployerIdentification No.) |
|                                                          |   |                             |
| 420 E. South Temple, Suite 520, Salt Lake City, UT            |   | 84111                            |
| (Address of principal executive offices)                      |   | (Zip Code)                       |
| Large Accelerated Filer |   | ☐                                                          |   | Accelerated Filer              |   | ☐ |
|-----------------------------------|--------|------------------------------------------------------------------|--------|-------------------------------------|--------|---------|
|                              |   |                                                             |   |
| Non-Accelerated Filer             |   | ☐  (Do not check if a smaller reporting company) |   | Smaller Reporting Company |   | ☒ |

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|                    |   | GREAT BASIN SCIENTIFIC, INC. |
|-------------------------|--------|------------------------------|
|                    |   |                         |   |
| Dated: October 21, 2016 |   |                         |   | By: |   | /s/ Ryan Ashton |
|                    |   |                         |   | Ryan Ashton |
|                    |   |                         |   | President, Chief Executive Officer, and Director(Principal Executive Officer) |
|                    |   |                         |   |
| Dated: October 21, 2016 |   |                         |   | By: |   | /s/ Jeffrey A. Rona |
|                    |   |                         |   | Jeffrey A. Rona |
|                    |   |                         |   | Chief Financial Officer(Principal Financial and Accounting Officer) |
| ExhibitNo. |   | Description                                                                                                                                                         |
|------------|--------|---------------------------------------------------------------------------------------------------------------------------------------------------------------------|
|       |   |                                                                                                                                                                |
| 3.1        |   | Seventh Amended and Restated Certificate of Incorporation of Great Basin Scientific, Inc. as amended through March 30, 2016 (19)                               |
|       |   |                                                                                                                                                                |
| 3.3        |   | Amended and Restated Bylaws of Great Basin Scientific, Inc. (2)                                                                                                     |
|       |   |                                                                                                                                                                |
| 3.4        |   | Form of Certificate of Designation of Series E Convertible Preferred Stock. (5)                                                                                     |
|       |   |                                                                                                                                                                |
| 3.5        |   | Certificate of Amendment to Certificate of Designation of Series E Convertible Preferred Stock, as filed with the Delaware Secretary of State on June 23, 2015. (7) |
|       |   |                                                                                                                                                                |
| 4.1        |   | Specimen certificate evidencing shares of common stock. (2)                                                                                                         |
|       |   |                                                                                                                                                                |
| 4.2        |   | Amended and Restated Voting Agreement dated as of July 30, 2014. (1)                                                                                                |
|       |   |                                                                                                                                                                |
| 4.3        |   | Third Amended and Restated Investor Rights Agreement dated as of April 21, 2014. (1)                                                                                |
|       |   |                                                                                                                                                                |
| 4.4        |   | Form of Second Amended and Restated Series C Warrant. (8)                                                                                                           |
|       |   |                                                                                                                                                                |
| 4.5        |   | Form of Warrant to Purchase common stock. (4)                                                                                                                       |
|       |   |                                                                                                                                                                |
| 4.6        |   | Form of Warrant to Purchase common stock or Preferred Stock. (4)                                                                                                    |
|       |   |                                                                                                                                                                |
| 4.7        |   | Form of Warrant to Purchase common stock. (4)                                                                                                                       |
|       |   |                                                                                                                                                                |
| 4.8        |   | Form of Series A Warrant. (3)                                                                                                                                       |
|       |   |                                                                                                                                                                |
| 4.9        |   | Form of Series B Warrant. (3)                                                                                                                                       |
|       |   |                                                                                                                                                                |
| 4.10       |   | Amended and Restated Form of Series C Warrant (amended and restated as of June 23, 2015). (7)                                                                       |
|       |   |                                                                                                                                                                |
| 4.11       |   | Form of Unit Purchase Option issued in connection with the Registrant’s follow-on offering. (5)                                                               |
|       |   |                                                                                                                                                                |
| 4.12       |   | Form of Representative’s Warrant issued in connection with the Registrant’s initial public offering. (3)                                                |
|       |   |                                                                                                                                                                |
| 4.13       |   | Form of Senior Secured Convertible Note, filed as Exhibit A to the Securities Purchase Agreement (9)                                                           |
|       |   |                                                                                                                                                                |
| 4.14       |   | Form of Series D Warrant, filed as Exhibit B to the Securities Purchase Agreement (9)                                                                               |
|       |   |                                                                                                                                                                |
| 4.15       |   | Form of Series E Warrant (16)                                                                                                                                       |
|       |   |                                                                                                                                                                |
| 4.16       |   | Form of Subscription Agreement (16)                                                                                                                                 |
|       |   |                                                                                                                                                                |
| 10.1       |   | Amendment Agreement to Securities Purchase Agreement between the Company and certain holders of its Notes and Series D warrants, dated February 8, 2016 (10)        |
|       |   |                                                                                                                                                                |

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|  ExhibitNo. |   | Description                                                                                                                                                           |
|------------------|--------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| 10.2             |   | Settlement Agreement between the Company and Dawson James dated February 8, 2016 (11)                                                                                      |
|             |   |                                                                                                                                                                       |
| 10.3             |   | Consulting Agreement between the Company and Dawson James dated February 8, 2016 (11)                                                                                      |
|             |   |                                                                                                                                                                       |
| 10.4             |   | Amendment Agreement to Registration Rights Agreement between the Company and certain holders of its convertible notes and Series D warrants, dated February 13, 2016. (14) |
|             |   |                                                                                                                                                                       |
| 10.5             |   | Placement Agent Agreement by and between the Company and Roth Capital Partners, LLC (16)                                                                                   |
|             |   |                                                                                                                                                                       |
| 10.6             |   | Form of Second Amendment Agreement to the Registration Rights Agreement (17)                                                                                               |
|             |   |                                                                                                                                                                       |
| 10.7             |   | Second Amendment to Lease between Bay Pacific East South Temple, LLC and Great Basin Scientific, Inc. (18)                                                                 |
|             |   |                                                                                                                                                                       |
| 31.1             |   | Certification of Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.                                                                        |
|             |   |                                                                                                                                                                       |
| 31.2             |   | Certification of Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.                                                                        |
|             |   |                                                                                                                                                                       |
| 32.1             |   | Certification of Chief Executive Officer pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.(19)                                                                    |
|             |   |                                                                                                                                                                       |
| 32.2             |   | Certification of Chief Financial Officer pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.(19)                                                                    |
|             |   |                                                                                                                                                                       |
| 101.INS          |   | XBRL Instance Document (19)                                                                                                                                                |
|             |   |                                                                                                                                                                       |
| 101.SCH          |   | XBRL Taxonomy Extension Schema Document(19)                                                                                                                                |
|             |   |                                                                                                                                                                       |
| 101.CAL          |   | XBRL Taxonomy Extension Calculation Linkbase Document (19)                                                                                                                 |
|             |   |                                                                                                                                                                       |
| 101.DEF          |   | BRL Taxonomy Extension Definition Linkbase Document (19)                                                                                                                   |
|             |   |                                                                                                                                                                       |
| 101.LAB          |   | XBRL Taxonomy Extension Label Linkbase Document (19)                                                                                                                       |
|             |   |                                                                                                                                                                       |
| 101.PRE          |   | XBRL Taxonomy Extension Presentation Linkbase Document (19)                                                                                                                |

| @ | Portions of this exhibit (indicated by asterisks) have been omitted pursuant to a grant of confidential treatment from the SEC. |
|---|---------------------------------------------------------------------------------------------------------------------------------|

| (1) | Filed as an exhibit to Amendment No. 1 to the Registrant’s Registration Statement on Form S-1 (File No. 333-197954) filed with the SEC on August 20, 2014, and incorporated herein by reference. |
|-----|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (2) | Filed as an exhibit to Amendment No. 2 to the Registrant’s Registration Statement on Form S-1 (File No. 333-197954) filed with the SEC on September 8, 2014, and incorporated herein by reference. |
|-----|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (3) | Filed as an exhibit to Amendment No. 3 to the Registrant’s Registration Statement on Form S-1 (File No. 333-197954) filed with the SEC on September 23, 2014, and incorporated herein by reference. |
|-----|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (4) | Filed as an exhibit to Amendment No. 4 to the Registrant’s Registration Statement on Form S-1 (File No. 333-197954) filed with the SEC on September 24, 2014, and incorporated herein by reference. |
|-----|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (5) | Filed as an exhibit to Amendment No. 2 to the Registrant’s Registration Statement on Form S-1 (File No. 333-201596) filed with the SEC on February 24, 2015, and incorporated herein by reference. |
|-----|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (7) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-3662) filed with the SEC on June 23, 2015, and incorporated herein by reference. |
|-----|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (8) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on December 7, 2015 and incorporated herein by reference. |
|-----|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (9) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on December 28, 2015 and incorporated herein by reference |
|-----|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (10) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on February 8, 2016 and incorporated herein by reference |
|------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (11) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on February 8, 2016 and incorporated by reference. |
|------|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (12) | Filed as an exhibit to Amendment No. 2 to the Registrant’s Registration Statement on Form S-1 (File No. 333-207761) filed with the SEC on February 9, 2016 and incorporated herein by reference. |
|------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (13) | Filed as an exhibit to Amendment No. 3 to the Registrant’s Registration Statement on Form S-1 (File No. 333-207761) filed with the SEC on February 11, 2016 and incorporated by reference. |
|------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (14) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on February 16, 2016 and incorporated herein by reference. |
|------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (15) | Filed as an exhibit to Amendment No. 4 to the Registrant’s Registration Statement on Form S-1 (File No. 333-207761) filed with the SEC on February 16, 2016 and incorporated by reference. |
|------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

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| (16) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on February 19, 2016 and incorporated herein by reference. |
|------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (17) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on February 29, 2016 and incorporated herein by reference. |
|------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (18) | Filed as an exhibit to the Registrant’s Current Report on Form 8-K (File No. 001-36662) filed with the SEC on March 16, 2016 and incorporated herein by reference. |
|------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

| (19) | Filed as an exhibit to the Registrant’s Quarterly Report on Form 10-Q (File No. 001-36662) filed with the SEC on May 12, 2016 and incorporated herein by reference. |
|------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|

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