# Patent

## Title
Piperazinylimidazopyridine and piperazinyltriazolopyridine antagonists of Gonadotropin Releasing Hormone receptor

## Abstract

The present invention relates to Gonadotropin Releasing Hormone (GnRH, also known as Luteinizing Hormone Releasing Hormone) receptor antagonists.

## Background
This application claims the benefit of provisional application U.S. Ser. No. 60/684,726, filed May 26, 2005, which is hereby incorporated by reference into the subject application in its entirety.


Throughout this application, various publications are referenced. The disclosures of these publications in their entireties are hereby incorporated by reference into this application in order to more fully describe the state of the art as known to those skilled therein as of the date of the invention described and claimed herein.
This patent disclosure contains material that is subject to copyright protection. The copyright owner has no objection to the facsimile reproduction by anyone of the patent document or the patent disclosure, as it appears in the U.S. Patent and Trademark Office patent file or records, but otherwise reserves any and all copyright rights whatsoever.
FIELD OF THE INVENTION
The present invention relates to Gonadotropin Releasing Hormone (GnRH, also known as Luteinizing Hormone Releasing Hormone) receptor antagonists.
BACKGROUND OF THE INVENTION
Gonadotropin Releasing Hormone is a decameric peptide released from the hypothalamus. In the anterior pituitary gland, GnRH activates the GnRH receptor. Activation of the GnRH receptor triggers the release of follicle stimulating hormone (FSH) and luteinizing hormone (LH). FSH and LH stimulate the biosynthesis and release of sex steroids in the gonads of both genders.
Typically, this stimulation and release is desirable, but certain GnRH-related disorders exist where it would be beneficial to prevent activation of the GnRH receptor. For example, inhibition of the GnRH receptor can lead to a large drop in sex steroid production, which in turn can alleviate sex hormone-related conditions such as prostate cancer, endometriosis, uterine fibroids, uterine cancer, breast cancer, ovarian cancer, testicular cancer, or primary hirsutism. Moreover, there are other situations where it would be beneficial to prevent activation of the GnRH receptor, such as during some points of the in vitro fertilization process, for example, to prevent LH surge.
Currently marketed GnRH therapeutics are peptides that exhibit receptor antagonism in one of two ways. The first is through GnRH receptor superagonism. The GnRH receptor, when stimulated in bursts, causes normal release of the gonadotropins, FSH and LH. Under constant stimulation, the receptor becomes desensitized and the overall effect is GnRH receptor inhibition. The superagonism process is undesirable, because inhibition via this process can take up to two weeks to have an effect in human patients. During this delay, there is often an increase in disease symptoms due to the initial hormone stimulation phase. This phenomenon is referred to as flare.
The second method for receptor inhibition is through direct antagonism of the GnRH receptor with peptide antagonists. This causes an immediate drop in plasma LH levels. However, as mentioned above, current pharmaceuticals that cause blockade of the GnRH receptor are all peptides. As such they are not orally bioavailable and must be administered via parenteral means such as intravenous, subcutaneous, or intramuscular injection. Thus, an orally effective GnRH antagonist would be of great benefit.
The present invention is directed to these and other important ends.
SUMMARY OF THE INVENTION
In one embodiment, the invention provides compounds of the formula (I):




    and pharmaceutically acceptable salts thereof,
    wherein
    X is N or C—R28;
    Y is Q and Z is R18; or Y is R18 and Z is Q, wherein Q is






    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
    X1 is —O—, —NR12—, or —SOm—;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In another embodiment, the invention provides compounds of the formula (II):




and pharmaceutically acceptable salts thereof, wherein each of R6, Y, and Z are as described above for compounds of the formula (I).

In another embodiment, the compounds or pharmaceutically acceptable salts of the compounds of Formula (I) or Formula (II) are useful as pharmaceutical compositions comprising compounds or pharmaceutically acceptable salts of compounds of Formula (I) or Formula (II) and a pharmaceutically acceptable carrier.
In one embodiment, the compounds or pharmaceutically acceptable salts of the compounds of the Formula (I) or Formula (II) are useful as GnRH receptor antagonists.
In one embodiment, the invention provides methods for treating a GnRH-related disorder, comprising administering to a mammal in need thereof the compounds or pharmaceutically acceptable salts of compounds of Formula (I) or Formula (II) in an amount effective to treat a GnRH-related disorder. In another embodiment, the invention provides methods for preventing pregnancy, comprising administering to a female mammal the compounds or pharmaceutically acceptable salts of compounds of the Formula (I) or Formula (II) in an amount effective to prevent pregnancy.
In one embodiment, the invention provides methods of synthesizing the compounds or pharmaceutically acceptable salts of compounds of Formula (I) or Formula (II). In another embodiment, the invention provides compounds or pharmaceutically acceptable salts of compounds of Formula (I) or Formula (II) made by particular processes.


DESCRIPTION OF THE INVENTION
Definitions
The term “(C1-C6)-alkyl” as used herein refers to a linear or branched, saturated hydrocarbon having from 1 to 6 carbon atoms, Representative (C1-C6)-alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, butyl, sec-butyl, tert-butyl, pentyl, isopentyl, neopentyl, hexyl, isohexyl, and neohexyl. In one embodiment, the (C1-C6)-alkyl group is substituted with one or more of the following groups: halogen, —N3, —NO2, —CN, —OR′, —SR′, —SO2R′, —SO2N(R′)2, —N(R′)2, —COR′, —CO2R′, —NR′CO2R′, —NR′COR′, —NR′CONR′, or —CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl.
The term “(C2-C6)-alkenyl” as used herein refers to a linear or branched hydrocarbon having from 2 to 6 carbon atoms and having at least one carbon-carbon double bond. In one embodiment, the (C2-C6)-alkenyl has one or two double bonds. The (C2-C6)-alkenyl moiety may exist in the E or Z conformation and the compounds of the present invention include both conformations. In one embodiment, the (C2-C6)-alkenyl group is substituted with one or more of the following groups: halogen, —N3, —NO2, —CN, —OR′, —SR′, —SO2R′, —SO2N(R′)2, —N(R′)2, —COR′, —CO2R′, —NR′CO2R′, —NR′COR-, —NR′CONR′, or —CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl.
The term “(C2-C6)-alkynyl” as used herein refers to a linear or branched hydrocarbon having from 2 to 6 carbon atoms and having at least one carbon-carbon triple bond. In one embodiment, the (C2-C6)-alkenyl group is substituted with one or more of the following groups: halogen, —N3, —NO2, —CN, —OR′, —SR′, —SO2R′, —SO2N(R′)2, —N(R′)2, —COR′, —CO2R′, —NR′CO2R′, —NR′COR′, —NR′CONR′, or —CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl.
The term “administer”, “administering”, or “administration”, as used herein refers to either directly administering a compound or pharmaceutically acceptable salt of the compound or a composition to an animal, or administering a prodrug derivative or analog of the compound or pharmaceutically acceptable salt of the compound or composition to the animal, which can form an equivalent amount of active compound within the animal's body.
The term “animal” as used herein includes, without limitation, a human, mouse, rat, guinea pig, dog, cat, horse, cow, pig, monkey, chimpanzee, baboon, or rhesus. In one embodiment, the animal is a mammal. In another embodiment, the animal is a human.
The term “amine protecting group” as used herein refers to a moiety that temporarily blocks an amine reactive site in a compound. Generally, this is done so that a chemical reaction can be carried out at another reactive site in a multifunctional compound or to otherwise stabilize the amine. In one embodiment, an amine protecting group is selectively removable by a chemical reaction. An exemplary amine protecting group is a carbamate protecting group. Carbamate protecting groups include, without limitation, t-butyl carbamate, methyl carbamate, ethyl carbamate, 2,2,2-trichloroethyl carbamate, 2-(trimethylsilyl)ethyl carbamate, 1,1-dimethyl-2,2,2-trichloroethyl carbamate, benzyl carbamate, p-methoxybenzyl carbamate, p-nitrobenzylcarbamate, p-bromobenzyl carbamate, p-chlorobenzyl carbamate, and 2,4-dichlorobenzyl carbamate. See, Greene and Wuts, Protecting Groups in Organic Synthesis, Second Edition, John Wiley & Sons (1991).
The term “aryl” as used herein refers to an aromatic species containing 1 to 3 aromatic rings, either fused or linked. In one embodiment, the aryl group is substituted with one or more of the following groups: (C1-C6)-alkyl, —V-halogen, —V—N3, —V—NO2, —V—CN, —V—OR′, —V—SR′, —V—SO2R′, —V—SO2N(R′)2, —V—N(R′)2, —V—COR′, —V—CO2R′, —V—NR′CO2R′, —V—NR′COR′, —V—NR′CONR′, or —V—CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl; and wherein each V is independently a bond or (C1-C6)-alkyl.
The term “conditions effective to” as used herein refers to synthetic reaction conditions which will be apparent to those skilled in the art of synthetic organic chemistry.
The term “cyclic group” as used herein includes a cycloalkyl group and a heterocyclic group. Any suitable ring position of the cyclic group may be covalently linked to the defined chemical structure. In one embodiment, the cyclic group is substituted with one or more of the following groups: (C1-C6)-alkyl, —V-halogen, —V—N3, —V—NO2, —V—CN, —V—OR′, —V—SR′, —V—SO2R′, —V—SO2N(R′)2, —V—N(R′)2, —V—COR′, —V—CO2R′, —V—NR′CO2R′, —V—NR′COR′, —V—NR′CONR′, or —V—CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl; and wherein each V is independently a bond or (C1-C6)-alkyl.
The term “cycloalkyl group” as used herein refers to a three- to seven-membered saturated or partially unsaturated carbon ring. Any suitable ring position of the cycloalkyl group may be covalently linked to the defined chemical structure. Exemplary cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and cycloheptyl. In one embodiment, the cycloalkyl group is substituted with one or more of the following groups: (C1-C6)-alkyl, —V-halogen, —V—N3, —V—NO2, —V—CN, —V—OR′, —V—SR′, —V—SO2R′, —V—SO2N(R′)2, —V—N(R′)2, —V—COR′, —V—CO2R′, —V—NR′CO2R′, —V—NR′COR′, —V—NR′CONR′, or —V—CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl; and wherein each V is independently a bond or (C1-C6)-alkyl.
The term “effective amount” as used herein refers to an amount of a compound or pharmaceutically acceptable salt of a compound that, when administered to an animal, is effective to prevent, to at least partially ameliorate, or to cure, a condition from which the animal suffers or is suspected to suffer.
The term “FSH” as used herein refers to follicle stimulating hormone.
The term “GnRH” as used herein refers to Gonadotropin Releasing Hormone.
The term “Gonadotropin Releasing Hormone-related disorder” or “GnRH-related disorder” as used herein refers to a condition for which it would be beneficial to prevent activation of the GnRH receptor. Exemplary GnRH-related disorders include, without limitation, sex hormone-related conditions, sex hormone-dependent cancers, prostate cancer, testicular cancer, uterine cancer, ovarian cancer, breast cancer, pituitary gonadotrophe adenomas, endometriosis, polycystic ovarian disease, uterine fibroids, primary hirsutism, luteinizing hormone surge, and precocious puberty.
The term “LH” as used herein refers to luteinizing hormone.
The term “halogen” as used herein refers to fluorine, chlorine, bromine, and iodine.
The term “heterocyclic group” as used herein refers to a three- to seven-membered saturated, partially saturated, or unsaturated cycloalkyl group in which one to four of the ring carbon atoms have been independently replaced with a N, O, or S atom. Any suitable ring position of the heterocyclic group may be covalently linked to the defined chemical structure. Exemplary heterocyclic groups include, but are not limited to, azepanyl, azetidinyl, aziridinyl, furanyl, furazanyl, homopiperazinyl, imidazolidinyl, imidazolinyl, isothiazolyl, isoxazolyl, morpholinyl, oxadiazolyl, oxazolidinyl, oxazolyl, oxazolidinyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, piperazinyl, piperidinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazolyl, pyridoimidazolyl, pyridothiazolyl, pyridinyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, quinuclidinyl, tetrahydrofuranyl, thiadiazinyl, thiadiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiomorpholinyl, thiophenyl, triazinyl, and triazolyl. In one embodiment, the heterocyclic group is substituted with one or more of the following groups: (C1-C6)-alkyl, —V-halogen, —V—N3, —V—NO2, —V—CN, —V—OR′, —V—SR′, —V—SO2R′, —V—SO2N(R′)2, —V—N(R′)2, —V—COR′, —V—CO2R′, —V—NR′CO2R′, —V—NR′COR′, —V—NR′CONR′, or —V—CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl; and wherein each V is independently a bond or (C1-C6)-alkyl.
The term “isolated and purified” as used herein refers to an isolate that is separate from other components of a reaction mixture or a natural source. In certain embodiments, the isolate contains at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 95%, or at least about 98% of the compound or pharmaceutically acceptable salt of the compound by weight of the isolate.
The term “pharmaceutically acceptable salt” as used herein refers to a salt of an acid and a basic nitrogen atom of a compound of the present invention. Exemplary salts include, but are not limited to, sulfate, citrate, acetate, oxalate, chloride, hydrochloride, bromide, hydrobromide, iodide, nitrate, bisulfate, phosphate, acid phosphate, isonicotinate, lactate, salicylate, acid citrate, tartrate, oleate, tannate, pantothenate, bitartrate, ascorbate, succinate, maleate, gentisinate, fumarate, gluconate, glucaronate, saccharate, formate, benzoate, glutamate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, camphorsulfonate, napthalenesulfonate, propionate, succinate, fumarate, maleate, malonate, mandelate, malate, phthalate, and pamoate. The term “pharmaceutically acceptable salt” as used herein also refers to a salt of a compound of the present invention having an acidic functional group, such as a carboxylic acid functional group, and a base. Exemplary bases include, but are not limited to, hydroxide of alkali metals including sodium, potassium, and lithium; hydroxides of alkaline earth metals such as calcium and magnesium; hydroxides of other metals, such as aluminum and zinc; ammonia, organic amines such as unsubstituted or hydroxyl-substituted mono-, di-, or tri-alkylamines, dicyclohexylamine; tributyl amine; pyridine; N-methyl, N-ethylamine; diethylamine; triethylamine; mono-, bis-, or tris-(2-OH—(C1-C6)-alkylamine), such as N,N-dimethyl-N-(2-hydroxyethyl)amine or tri-(2-hydroxyethyl)amine; N-methyl-D-glucamine; morpholine; thiomorpholine; piperidine; pyrrolidine; and amino acids such as arginine, lysine, and the like. The term “pharmaceutically acceptable salt” also includes a hydrate of a compound of the present invention.
The term “phenyl” as used herein refers to a substituted or unsubstituted phenyl group. In one embodiment, the phenyl group is substituted with one or more of the following groups: (C1-C6)-alkyl, —V-halogen, —V—N3, —V—NO2, —V—CN, —V—OR′, —V—SR′, —V—SO2R′, —V—SO2N(R′)2, —V—N(R′)2, —V—COR′, —V—CO2R′, —V—NR′CO2R′, —V—NR′COR′, —V—NR′CONR′, or —V—CON(R′)2, wherein each R′ is independently hydrogen or unsubstituted (C1-C6)-alkyl; and wherein each V is independently a bond or (C1-C6)-alkyl.
The term “substantially free of its corresponding opposite enantiomer” as used herein means that the compound contains no more than about 10% by weight of its corresponding opposite enantiomer. In other embodiments, the compound that is substantially free of its corresponding opposite entantiomer contains no more than about 5%, no more than about 1%, no more than about 0.5%, or no more than about 0.1% by weight of its corresponding opposite enantiomer. An enantiomer that is substantially free of its corresponding opposite enantiomer includes a compound that has been isolated and purified or has been prepared substantially free of its corresponding opposite enantiomer.
The term “tautomer” as used herein refers to compounds produced by the phenomenon wherein a proton of one atom of a molecule shifts to another atom. See, Jerry March, Advanced Organic Chemistry: Reactions, Mechanisms and Structures, Fourth Edition, John Wiley & Sons, pages 69-74 (1992).
The following abbreviations as used herein mean: Ac is acetate; boc is t-butyl carbamate; Bu is butyl; dba is dibenzylideneacetone; DCE is 1,2-dichloroethane; DCM is dichloromethane; DIEA is diisopropylethylamine; DMF is dimethylformamide; DMSO is dimethylsulfoxide; ESI is electrospray ionization; Et is ethyl; HPLC is high pressure liquid chromatography; HRMS is high resolution mass spectrometry; LCMS is liquid chromatograph-mass spectrometry; Me is methyl; MS is mass spectrometry; m/z is mass-to-charge ratio; NMP is N-methyl pyrrolidine; NMR is nuclear magnetic resonance; r.t. is retention time; TFA is trifluoroacetic acid; THF is tetrahydrofuran.
Compounds and Pharmaceutically Acceptable Salts of Compounds of the Invention
The compounds or pharmaceutically acceptable salts of compounds of the present invention can contain an asymmetric carbon atom and some of the compounds or pharmaceutically acceptable salts of compounds of the invention can contain one or more asymmetric centers, and can thus give rise to optical isomers and diastereomers. While depicted without respect to stereochemistry in the compounds or pharmaceutically acceptable salts of compounds of the present invention, the present invention includes such optical isomers and diastereomers, as well as racemic and resolved, enantiomerically pure R and S stereoisomers, and also other mixtures of the R and S stereoisomers and pharmaceutically acceptable salts thereof. Where a stereoisomer is provided, it can in some embodiments be provided substantially free of its corresponding opposite enantiomer.
In addition, the compounds and pharmaceutically acceptable salts of compounds of the present invention can exist as tautomers. Such tautomers can be transient or isolatable as a stable product. These tautomers are within the scope of the present invention.
Prodrugs of the compounds or pharmaceutically acceptable salts of compounds are also within the scope of the present invention.
Compounds of the Formula (I)
In one embodiment, the present invention is directed to compounds of the Formula (I):




    and pharmaceutically acceptable salts thereof,
    wherein
    X is N or C—R28;
    Y is Q and Z is R18; or Y is R18 and Z is Q, wherein Q is






    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, R27, and R28 are each independetly hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
    X1 is —O-, —NR12-, or —SOm-;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, Ar is phenyl.
In another embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cycloalkyl group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.
In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In another embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen.
In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23; and R3 is




In one embodiment, R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




In one embodiment, the compound is 6-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline; 3-{4-[2-(4-tert-Butyl-phenyl)-imidazol[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-pyrido[2,3-b]pyrazine; 2-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline; 2-(4-tert-Butyl-phenyl)-5-[4-(2-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine; 5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-1-ethyl-1H-pyrimidine-2,4-dione; 5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-1H-pyrimidine-2,4-dione; 5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1H-pyrimidine-2,4-dione; 5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1-ethyl-1H-pyrimidine-2,4-dione; 2-(4-tert-Butyl-phenyl)-8-[4-(2-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine; 2-(4-tert-Butyl-phenyl)-8-[4-(1-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine; 6-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline; 2-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline; or 2-{4-[2-(4-tert-Butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline.
Compounds of the Formula (IA)
In one embodiment, the invention is directed to compounds of the Formula (IA):




    and pharmaceutically acceptable salts thereof,
    wherein
    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
    X1 is —O-, —NR12-, or —SOm-;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, Ar is phenyl.
In another embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cycloalkyl group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.
In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In another embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen.
In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23; and R3 is




In one embodiment, R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




Compounds of the Formula (IB)

In one embodiment, the invention is directed to compounds of the Formula (IB):




    and pharmaceutically acceptable salts thereof,
    wherein
    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or -COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
    X1 is —O—, —NR12—, or —SOm—;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, Ar is phenyl.
In another embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cycloalkyl group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.
In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In another embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen.
In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23; and R3 is




In one embodiment, R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




Compounds of the Formula (IC)

In one embodiment, the invention is directed to compounds of the Formula (IC):




    and pharmaceutically acceptable salts thereof,
    wherein
    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, 'NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
    X1 is —O-, —NR12-, or —SOm-;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, Ar is phenyl.
In another embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cycloalkyl group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with CR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.
In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In another embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen.
In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23; and R3 is




In one embodiment, R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




Compounds of the Formula (ID)

In one embodiment, the invention is directed to compounds of the Formula (ID):




    and pharmaceutically acceptable salts thereof,
    wherein
    Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13or —CON(R13)(R14);
    X1 is —O-, —NR12-, or —SOm-;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, Ar is phenyl.
In another embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cycloalkyl group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or

    NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.


In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In another embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen.
In one embodiment, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23; and R3 is




In one embodiment, R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; Ar is phenyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




Compounds of the Formula (II)

In another embodiment, the invention provides compounds of the Formula (II):




    and pharmaceutically acceptable salts thereof,
    wherein
    Y is Q and Z is hydrogen; or Y is hydrogen and Z is Q, wherein Q is






    R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R3 is one of the following:









    each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
    R4, R5, R10, and R23 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
    each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
    R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
    R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
    R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
    R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
    X1 is —O-, —NR12-, or —SOm-;
    each m is independently 0, 1, or 2; and
    each n is independently 0, 1, 2, 3, or 4.


In one embodiment, one R6 substituent is attached at the 4 position of phenyl.
In one embodiment, R1 and R2 are each independently hydrogen; linear or branched (C1-C6)-alkyl; or R1 and R2 may together form a three- to seven-membered cyclic group.
In another embodiment, R1 and R2 are hydrogen.
In one embodiment, R1 is linear or branched (C1-C6)-alkyl and R2 is hydrogen.
In one embodiment, R1 is methyl and R2 is hydrogen.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound.
In one embodiment, R4 and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl.
In one embodiment, R4 and R5 are hydrogen.
In another embodiment, R4 is linear or branched (C1-C6)-alkyl and R5 is hydrogen.
In one embodiment, R4 is methyl or ethyl and R5 is hydrogen.
In another embodiment, when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In another embodiment, when R1 and R2 are different, the compound or pharmaceutically acceptable salt of the compound is the R-enantiomer with respect to the carbon to which R1 and R2 are bound, and when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.
In one embodiment, R6 is hydrogen, linear or branched (C1-C6)-alkyl, —N(R23)2, or

    NR13R14; R23 is linear or branched (C1-C6)-alkyl; and R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —(CH2)nOR23.


In one embodiment, R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.
In one embodiment, R3 is




In another embodiment, R3 is




In one embodiment, R1, R2, R4, and R5 are each independently hydrogen, or linear or branched (C1-C6)-alkyl; R6 is attached at the 4-position of phenyl; R6 is linear or branched (C1-C6)-alkyl, —N(R23)2, or —NR13R14; R23 is linear or branched (C1-C6)-alkyl; R13 and R14 are each independently linear or branched (C1-C6)-alkyl, each optionally substituted with —OR23, —SR23, or —N(R23)2; or R13 and R14 may be taken together to form a three- to seven-membered heterocyclic group containing one or two heteroatoms selected from N or O, and optionally substituted with —OR23, —SR23, —N(R23)2, or —CH2)nOR23; and R3 is




In one embodiment, R2, and R5 are each hydrogen; R1 and R4 are each independently hydrogen, methyl, or ethyl; R6 is attached at the 4-position of phenyl; R6 is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3 is




Methods for Making the Compounds and Pharmaceutically Acceptable Salts of Compounds of the Invention

The compounds and pharmaceutically acceptable salts of compounds of the present invention can be prepared using a variety of methods starting from commercially available compounds, known compounds, or compounds prepared by known methods. General synthetic routes to many of the compounds of the invention are included in the following schemes. It is understood by those skilled in the art that protection and deprotection steps not shown in the Schemes may be required for these syntheses, and that the order of steps may be changed to accommodate functionality in the target molecule.
Scheme 1 demonstrates the synthesis of a compound or pharmaceutically acceptable salt of a compound of the Formula (IA), wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, R27, and R28 are as defined above, and R29 is Cl or Br. A compound of the Formula (III) is first reacted under conditions effective to bring about cyclization, thereby providing a compound having the Formula (IV). The compound of Formula (IV) is then reacted with a piperazine, providing a compound having the Formula (V). The free amine of the piperazine of Formula (V) is subsequently reacted under conditions effective to provide a compound of the Formula (IA).




Scheme 2 provides the synthesis of a specific intermediate following the general procedures set forth in Scheme 1, which can be further elaborated to provide compounds of the Formula (IA). The intermediate, 2-(4-tert-butyl-phenyl)-8-piperazin-1-yl-imidazo[1,2-a]pyridine (1, was prepared from either of two starting materials (Scheme 2). 2-Amino-3-chloropyridine (1a) was prepared from 2,3-dichloropyridine following a known method. 2-Amino-3-bromo pyridine (1b) is available from commercial sources. The 2-amino-3-halo-pyridines (1a and 1b) were cyclized with 4-tert-butylphenacyl chloride to afford (1a and 1b). Intermediate (3) was obtained via a Buchwald reaction using Cbz-piperazine as the solvent with intermediate (2a). After purification the Cbz group was removed with catalytic hydrogenation, providing (4). Another approach was also employed using (2b). A Buchwald coupling with excess piperazine afforded (4) directly.
Further elaboration of the intermediate (4), can include, for example, alkylation with 6-bromomethyl-quinoxaline heated in the presence of DIEA in a solvent such as acetonitrile, or reductive amination of an appropriate aldehyde in the presence of NaBH(OAc)3 in a solvent such as NMP or DCE.




Scheme 3 demonstrates the synthesis of a compound or pharmaceutically acceptable salt of a compound of Formula (IB) wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, R27, and R28 are as defined above. As shown in Scheme 3, an aminopyridine of the Formula (VI) is reacted under conditions effective to bring about cyclization, thereby providing a compound having the Formula (VII). Halogenating the compound of the Formula (VII) and reacting with a piperazine provides a compound having the Formula (VIII). The free amine of the piperazine of Formula (VIII) is subsequently reacted under conditions effective to provide a compound of the Formula (IB).




Scheme 4 provides the synthesis of a specific intermediate following the general procedures set forth in Scheme 3, which can be further elaborated to provide compounds of the Formula (IB). 2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-imidazo[1,2-a]pyridine (7) was obtained as described in Scheme 4. 2-Aminopyridine was cyclized with 4-tert-butylphenacyl chloride to afford 2-(4-tert-butyl-phenyl-imidazo[1,2-a]pyridine (5). Lithiation followed by bromination provided a ratio of three products (6a, 70.7%; 6b, 12.3%; and 6c, 17.0%). Heating the mixture with piperazine provided (7) from (6a), which was easily separated from unreactive (6b) and (6c).
Further elaboration of the intermediate (7), can include, for example, alkylation with 6-bromomethyl-quinoxaline heated in the presence of DIEA in a solvent such as acetonitrile, or reductive amination of an appropriate aldehyde in the presence of NaBH(OAc)3 in a solvent such as NMP or DCE.




Scheme 5 demonstrates the synthesis of a compound or pharmaceutically acceptable salt of a compound of the Formula (IC), wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are as defined above. An aminopyridine of the Formula (VI) is reacted under conditions effective to provide a diaminopyridinium iodide having the Formula (IX). The compound of the Formula (IX) is then reacted under conditions effective to bring about cyclization, thereby providing a compound having the Formula (X). Halogenating the compound of the Formula (X) and reacting with a piperazine provides a compound having the Formula (XI). The free amine of the piperazine of Formula (XI) is subsequently reacted under conditions effective to provide a compound of the Formula (IC).




Scheme 6 provides the synthesis of a specific intermediate following the general procedures set forth in Scheme 5, which can be further elaborated to provide compounds of the Formula (IC). As shown in Scheme 6, 2-aminopyridine was converted to 1,2-diamino-pyridinium iodide (8). This was cyclized with 4-tert-butyl-benzoyl chloride, providing (9). Intermediate (9) was brominated and the product (10) was treated with piperazine in DMSO while heating to provide 2-(4-tert-butyl-phenyl)-5-piperazin-1-yl-[1,2,4]triazolo[1,5-a]pyridine (11).
Further elaboration of the intermediate (11), can include, for example, alkylation with 6-bromomethyl-quinoxaline heated in the presence of DIEA in a solvent such as acetonitrile, or reductive amination of an appropriate aldehyde in the presence of NaBH(OAc)3 in a solvent such as NMP or DCE.




Scheme 7 shows the synthesis of a compound or pharmaceutically acceptable salt of a compound of the Formula (ID), wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are as defined above. A hydrazinonitropyridine of the Formula (XII) is reacted under conditions effective to provide a compound of the Formula (XIII). The compound of Formula (XIII) is then under conditions effective to bring about isomerization to provide a compound of the Formula (XIV), Reducing the nitro group of the compound of Formula (XIV) provides a compound of the Formula (XV). Diazotizing and halogenating the compound of Formula (XV) and reacting with piperazine provides a compound of the Formula (XVI). The free amine of the piperazine of Formula (XVI) is subsequently reacted under conditions effective to provide a compound of the Formula (ID).




Scheme 8 provides the synthesis of a specific intermediate following the general procedures set forth in Scheme 7, which can be further elaborated to provide a compound of the Formula (ID). Scheme 8 outlines a method for the preparation of the piperazine intermediate, 2-(4-tert-butyl-phenyl)-8-piperazin-1-yl-[1,2,4]triazolo[1,5-a]pyridine (16). Following the literature protocol from Potts and Surapaneni (Journal of Heterocyclic Chemistry, 7:1019-1027 (1970)), 2-hydrazino-3-nitropyridine is treated with 4-tert-butyl-benzoic acid while heating. Isomerization of intermediate product, 3-(4-tert-Butyl-phenyl)-8-nitro-[1,2,4]triazolo[4,3-a]pyridine (12) during the reaction provides 2-(4-tert-Butyl-phenyl)-8-nitro-[1,2,4]triazolo[1,5-a]pyridine (13), Reduction of the nitro group provides (14). Subsequent diazotization and halogenation gives the 8-halo products (15) following the procedures of Van Heertum et. al. (U.S. Pat. No. 5,571,775 (1996)). Treatment with piperazine using, for example, Buchwald conditions provides (6).
Further elaboration of the intermediate (16), can include, for example, alkylation with 6-bromomethyl-quinoxaline heated in the presence of DIEA in a solvent such as acetonitrile, or reductive amination of an appropriate aldehyde in the presence of NaBH(OAc)3 in a solvent such as NMP or DCE.




One of skill in the art will recognize that Schemes 1-8 can be adapted to produce the other compounds and pharmaceutically acceptable salts of compounds according to the present invention.
Therapeutic Administration
When administered to an animal, the compounds or pharmaceutically acceptable salts of the compounds of the invention can be administered neat or as a component of a composition that comprises a physiologically acceptable carrier or vehicle. A composition of the invention can be prepared using a method comprising admixing the compound or a pharmaceutically acceptable salt of the compound and a physiologically acceptable carrier, excipient, or diluent. Admixing can be accomplished using methods well known for admixing a compound or a pharmaceutically acceptable salt of the compound and a physiologically acceptable carrier, exipient, or diluent.
The present compositions, comprising compounds or pharmaceutically acceptable salts of the compounds of the invention can be administered orally. The compounds or pharmaceutically acceptable salts of compounds of the invention can also be administered by any other convenient route, for example, by infusion or bolus injection, by absorption through epithelial or mucocutaneous linings (e.g., oral, rectal, vaginal, and intestinal mucosa, etc.) and can be administered together with another therapeutic agent. Administration can be systemic or local. Various known delivery systems, including encapsulation in liposomes, microparticles, microcapsules, and capsules, can be used.
Methods of administration include, but are not limited to, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, intranasal, epidural, oral, sublingual, intracerebral, intravaginal, transdermal, rectal, by inhalation, or topical, particularly to the ears, nose, eyes, or skin. In some instances, administration will result of release of the compound or a pharmaceutically acceptable salt of the compound into the bloodstream. The mode of administration is left to the discretion of the practitioner.
In one embodiment, the compound or a pharmaceutically acceptable salt of the compound is administered orally.
In another embodiment, the compound or a pharmaceutically acceptable salt of the compound is administered intravenously.
In another embodiment, it may be desirable to administer the compound or a pharmaceutically acceptable salt of the compound locally. This can be achieved, for example, by local infusion during surgery, topical application, e.g., in conjunction with a wound dressing after surgery, by injection, by means of a catheter, by means of a suppository or edema, or by means of an implant, said implant being of a porous, non-porous, or gelatinous material, including membranes, such as sialastic membranes, or fibers.
In certain embodiments, it can be desirable to introduce the compound or a pharmaceutically acceptable salt of the compound into the central nervous system, circulatory system or gastrointestinal tract by any suitable route, including intraventricular, intrathecal injection, paraspinal injection, epidural injection, enema, and by injection adjacent to the peripheral nerve. Intraventricular injection can be facilitated by an intraventricular catheter, for example, attached to a reservoir, such as an Ommaya reservoir.
Pulmonary administration can also be employed, e.g., by use of an inhaler or nebulizer, and formulation with an aerosolizing agent, or via perfusion in a fluorocarbon or synthetic pulmonary surfactant. In certain embodiments, the compound or a pharmaceutically acceptable salt of the compound can be formulated as a suppository, with traditional binders and excipients such as triglycerides.
In another embodiment, the compound or a pharmaceutically acceptable salt of the compound can be delivered in a vesicle, in particular a liposome (see Langer, Science 249:1527-1533 (1990) and Treat et al., Liposomes in the Therapy of Infectious Disease and Cancer 317-327 and 353-365 (1989)).
In yet another embodiment, the compound or a pharmaceutically acceptable salt of the compound can be delivered in a controlled-release system or sustained-release system (see, e.g., Goodson, in Medical Applications of Controlled Release, vol. 2, pp. 115-138 (1984)). Other controlled or sustained-release systems discussed in the review by Langer, Science 249:1527-1533 (1990) can be used. In one embodiment, a pump can be used (Langer, Science 249:1527-1533 (1990); Sefton, CRC Crit, Ref. Biomed. Eng. 14:201 (1987); Buchwald et al., Surgery 88:507 (1980); and Saudek et al., N. Engl. J. Med. 321:574 (1989)). In another embodiment, polymeric materials can be used (see Medical Applications of Controlled Release (Langer and Wise eds., 1974); Controlled Drug Bioavailability, Drug Product Design and Performance (Smolen and Ball eds., 1984); Ranger and Peppas, J. Macromol. Sci, Rev. Macromol. Chem. 2:61 (1983); Levy et al., Science 228:190 (1935); During et al., Ann. Neural. 25:351 (1989); and Howard et al., J. Neurosurg. 71:105 (1989)).
In yet another embodiment, a controlled- or sustained-release system can be placed in proximity of a target of the compound or a pharmaceutically acceptable salt of the compound, e.g., the reproductive organs, thus requiring only a fraction of the systemic dose.
The present compositions can optionally comprise a suitable amount of a physiologically acceptable excipient.
Such physiologically acceptable excipients can be liquids, such as water and oils, including those of petroleum, animal, vegetable, or synthetic origin, such as peanut oil, soybean oil, mineral oil, sesame oil and the like. The physiologically acceptable excipients can be saline, gum acacia, gelatin, starch paste, talc, keratin, colloidal silica, urea and the like. In addition, auxiliary, stabilizing, thickening, lubricating, and coloring agents can be used. In one embodiment the physiologically acceptable excipients are sterile when administered to an animal. The physiologically acceptable excipient should be stable under the conditions of manufacture and storage and should be preserved against the contaminating action of microorganisms. Water is a particularly useful excipient when the compound or a pharmaceutically acceptable salt of the compound is administered intravenously. Saline solutions and aqueous dextrose and glycerol solutions can also be employed as liquid excipients, particularly for injectable solutions. Suitable physiologically acceptable excipients also include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glycerol monostearate, talc, sodium chloride, dried skim milk, glycerol, propylene, glycol, water, ethanol and the like. The present compositions, if desired, can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents.
Liquid carriers may be used in preparing solutions, suspensions, emulsions, syrups, and elixirs. The compound or pharmaceutically acceptable salt of the compound of this invention can be dissolved or suspended in a pharmaceutically acceptable liquid carrier such as water, an organic solvent, a mixture of both, or pharmaceutically acceptable oils or fat. The liquid carrier can contain other suitable pharmaceutical additives including solubilizers, emulsifiers, buffers, preservatives, sweeteners, flavoring agents, suspending agents, thickening agents, colors, viscosity regulators, stabilizers, or osmo-regulators. Suitable examples of liquid carriers for oral and prenteral administration include water (particular containing additives as above, e.g., cellulose derivatives, including sodium carboxymethyl cellulose solution), alcohols (including monohydric alcohols and polyhydric alcohols, e.g., glycols) and their derivatives, and oils (e.g., fractionated coconut oil and arachis oil). For parenteral administration the carrier can also be an oily ester such as ethyl oleate and isopropyl myristate. Sterile liquid carriers are used in sterile liquid form compositions for parenteral administration. The liquid carrier for pressurized compositions can be halogenated hydrocarbon or other pharmaceutically acceptable propellant.
The present compositions can take the form of solutions, suspensions, emulsion, tablets, pills, pellets, capsules, capsules containing liquids, powders, sustained-release formulations, suppositories, emulsions, aerosols, sprays, suspensions, or any other form suitable for use. In one embodiment, the composition is in the form of a capsule. Other examples of suitable physiologically acceptable excipients are described in Remington's Pharmaceutical Sciences 1447-1676 (Alfonso R. Gennaro, ed., 19th ed. 1995).
In one embodiment, the compound or a pharmaceutically acceptable salt of the compound is formulated in accordance with routine procedures as a composition adapted for oral administration to humans. Compositions for oral delivery can be in the form of tablets, lozenges, buccal forms, troches, aqueous or oily suspensions or solutions, granules, powders, emulsions, capsules, syrups, or elixirs for example. Orally administered compositions can contain one or more agents, for example, sweetening agents such as fructose, aspartame or saccharin; flavoring agents such as peppermint, oil of wintergreen, or cherry; coloring agents; and preserving agents, to provide a pharmaceutically palatable preparation. In powders, the carrier can be a finely divided solid, which is an admixture with the finely divided compound or pharmaceutically acceptable salt of the compound. In tablets, the compound or pharmaceutically acceptable salt of the compound is mixed with a carrier having the necessary compression properties in suitable proportions and compacted in the shape and size desired. The powders and tablets can contain up to about 99% of the compound or pharmaceutically acceptable salt of the compound.
Capsules may contain mixtures of the compounds or pharmaceutically acceptable salts of the compounds with inert fillers and/or diluents such as pharmaceutically acceptable starches (e.g., corn, potato, or tapioca starch), sugars, artificial sweetening agents, powdered celluloses (such as crystalline and microcrystalline celluloses), flours, gelatins, gums, etc.
Tablet formulations can be made by conventional compression, wet granulation, or dry granulation methods and utilize pharmaceutically acceptable diluents, binding agents, lubricants, disintegrants, surface modifying agents (including surfactants), suspending or stabilizing agents (including, but not limited to, magnesium stearate, stearic acid, sodium lauryl sulfate, talc, sugars, lactose, dextrin, starch, gelatin, cellulose, methyl cellulose, microcrystalline cellulose, sodium carboxymethyl cellulose, carboxymethylcellulose calcium, polyvinylpyrroldine, alginic acid, acacia gum, xanthan gum, sodium citrate, complex silicates, calcium carbonate, glycine, sucrose, sorbitol, dicalcium phosphate, calcium sulfate, lactose, kaolin, mannitol, sodium chloride, low melting waxes, and ion exchange resins. Surface modifying agents include nonionic and anionic surface modifying agents, Representative examples of surface modifying agents include, but are not limited to, poloxamer 188, benzalkonium chloride, calcium stearate, cetostearl alcohol, cetomacrogol emulsifying wax, sorbitan esters, colloidal silicon dioxide, phosphates, sodium dodecylsulfate, magnesium aluminum silicate, and triethanolamine.
Moreover, when in a tablet or pill form, the compositions can be coated to delay disintegration and absorption in the gastrointestinal tract, thereby providing a sustained action over an extended period of time. Selectively permeable membranes surrounding an osmotically active driving compound or a pharmaceutically acceptable salt of the compound are also suitable for orally administered compositions. In these latter platforms, fluid from the environment surrounding the capsule can be imbibed by the driving compound, which swells to displace the agent or agent composition through an aperture. These delivery platforms can provide an essentially zero order delivery profile as opposed to the spiked profiles of immediate release formulations. A time-delay material such as glycerol monostearate or glycerol stearate can also be used. Oral compositions can include standard excipients such as mannitol, lactose, starch, magnesium stearate, sodium saccharin, cellulose, and magnesium carbonate. In one embodiment the excipients are of pharmaceutical grade.
In another embodiment, the compound or a pharmaceutically acceptable salt of the compound can be formulated for intravenous administration. Typically, compositions for intravenous administration comprise sterile isotonic aqueous buffer. Where necessary, the compositions can also include a solubilizing agent. Compositions for intravenous administration can optionally include a local anesthetic such as lignocaine to lessen pain at the site of the injection. Generally, the ingredients are supplied either separately or mixed together in unit dosage form, for example, as a dry lyophilized powder or water-free concentrate in a hermetically sealed container such as an ampule or sachette indicating the quantity of active agent. Where the compound or a pharmaceutically acceptable salt of the compound is to be administered by infusion, it can be dispensed, for example, with an infusion bottle containing sterile pharmaceutical grade water or saline. Where the compound or a pharmaceutically acceptable salt of the compound is administered by injection, an ampule of sterile water for injection or saline can be provided so that the ingredients can be mixed prior to administration.
In another embodiment, the compound or pharmaceutically acceptable salt of the compound can be administered transdermally thorugh the use of a transdermal patch. Transdermal administrations include administrations across the surface of the body and the inner linings of the bodily passages including epithelial and mucosal tissues. Such administrations can be carried out using the present compounds or pharmaceutically acceptable salts of the compounds, in lotions, creams, foams, patches, suspensions, solutions, and suppositories (e.g., rectal or vaginal).
Transdermal administration can be accomplished through the use of a transdermal patch containing the compound or pharmaceutically acceptable salt of the compound and a carrier that is inert to the compound or pharmaceutically acceptable salt of the compound, is non-toxic to the skin, and allows delivery of the agent for systemic absorption into the blood stream via the skin. The carrier may take any number of forms such as creams or ointments, pastes, gels, or occlusive devices. The creams or ointments may be viscous liquid or semisolid emulsions of either the oil-in-water or water-in-oil type. Pastes comprised of absorptive powders dispersed in petroleum or hydrophilic petroleum containing the active ingredient may also be suitable. A variety of occlusive devices may be used to release the compound or pharmaceutically acceptable salt of the compound into the blood stream, such as a semi-permeable membrane covering a reservoir containing the compound or pharmaceutically acceptable salt of the compound with or without a carrier, or a matrix containing the active ingredient.
The compounds or pharmaceutically acceptable salts of the compounds of the invention may be administered rectally or vaginally in the form of a conventional suppository. Suppository formulations may be made from traditional materials, including cocoa butter, with or without the addition of waxes to alter the suppository's melting point, and glycerin. Water-soluble suppository bases, such as polyethylene glycols of various molecular weights, may also be used.
The compound or a pharmaceutically acceptable salt of the compound can be administered by controlled-release or sustained-release means or by delivery devices that are known to those of ordinary skill in the art. Such dosage forms can be used to provide controlled- or sustained-release of one or more active ingredients using, for example, hydropropylmethyl cellulose, other polymer matrices, gels, permeable membranes, osmotic systems, multilayer coatings, microparticles, liposomes, microspheres, or a combination thereof to provide the desired release profile in varying proportions. Suitable controlled- or sustained-release formulations known to those skilled in the art, including those described herein, can be readily selected for use with the active ingredients of the invention. The invention thus encompasses single unit dosage forms suitable for oral administration such as, but not limited to, tablets, capsules, gelcaps, and caplets that are adapted for controlled- or sustained-release.
In one embodiment a controlled- or sustained-release composition comprises a minimal amount of the compound or a pharmaceutically acceptable salt of the compound to treat or prevent a GnRH-related disorder in a minimal amount of time. Advantages of controlled- or sustained-release compositions include extended activity of the drug, reduced dosage frequency, and increased compliance by the animal being treated. In addition, controlled- or sustained-release compositions can favorably affect the time of onset of action or other characteristics, such as blood levels of the compound or a pharmaceutically acceptable salt of the compound, and can thus reduce the occurrence of adverse side effects.
Controlled- or sustained-release compositions can initially release an amount of the compound or a pharmaceutically acceptable salt of the compound that promptly produces the desired therapeutic or prophylactic effect, and gradually and continually release other amounts of the compound or a pharmaceutically acceptable salt of the compound to maintain this level of therapeutic or prophylactic effect over an extended period of time. To maintain a constant level of the compound or a pharmaceutically acceptable salt of the compound in the body, the compound or a pharmaceutically acceptable salt of the compound can be released from the dosage form at a rate that will replace the amount of the compound or a pharmaceutically acceptable salt of the compound being metabolized and excreted from the body. Controlled- or sustained-release of an active ingredient can be stimulated by various conditions, including but not limited to, changes in pH, changes in temperature, concentration or availability of enzymes, concentration or availability of water, or other physiological conditions or compounds.
In certain embodiments, the present invention is directed to prodrugs of the compounds or pharmaceutically acceptable salts of compounds of the present invention. Various forms of prodrugs are known in the art, for example as discussed in Bundgaard (ed.), Design of Prodrugs, Elsevier (1985); Widder et al (ed.), Methods in Enzymology, vol. 4, Academic Press (1985); Kgrogsgaard-Larsen et al. (ed.); “Design and Application of Prodrugs”, Textbook of Drug Design and Development, Chapter 5, 113-191 (1991); Bundgaard et al., Journal of Drug Delivery Reviews, 8:1-38 (1992); Bundgaard et al., J. Pharmaceutical Sciences, 77:285 et seq. (1988); and Higuchi and Stella (eds.), Prodrugs as Novel Drug Delivery Systems, American Chemical Society (1975).
The amount of the compound or a pharmaceutically acceptable salt of the compound is an amount that is effective for treating or preventing a GnRH-related disorder. In addition, in vitro or in vivo assays can optionally be employed to help identify optimal dosage ranges. The precise dose to be employed can also depend on the route of administration, the condition, the seriousness of the condition being treated, as well as various physical factors related to the individual being treated, and can be decided according to the judgment of a health-care practitioner. Equivalent dosages may be administered over various time periods including, but not limited to, about every 2 hours, about every 6 hours, about every 8 hours, about every 12 hours, about every 24 hours, about every 36 hours, about every 48 hours, about every 72 hours, about every week, about every two weeks, about every three weeks, about every month, and about every two months. The number and frequency of dosages corresponding to a completed course of therapy will be determined according to the judgment of a health-care practitioner. The effective dosage amounts described herein refer to total amounts administered; that is, if more than one compound or a pharmaceutically acceptable salt of the compound is administered, the effective dosage amounts correspond to the total amount administered.
The amount of the compound or a pharmaceutically acceptable salt of the compound that is effective for treating or preventing a GnRH-related disorder will typically range from about 0.001 mg/kg to about 250 mg/kg of body weight per day, in one embodiment, from about 1 mg/kg to about 250 mg/kg body weight per day, in another embodiment, from about 1 mg/kg to about 50 mg/kg body weight per day, and in another embodiment, from about 1 mg/kg to about 20 mg/kg of body weight per day.
In one embodiment, the pharmaceutical composition is in unit dosage form, e.g., as a tablet, capsule, powder, solution, suspension, emulsion, granule, or suppository. In such form, the composition is sub-divided in unit dose containing appropriate quantities of the active ingredient; the unit dosage form can be packaged compositions, for example, packeted powders, vials, ampoules, prefilled syringes or sachets containing liquids. The unit dosage form can be, for example, a capsule or tablet itself, or it can be the appropriate number of any such compositions in package form. Such unit dosage form may contain from about 1 mg/kg to about 250 mg/kg, and may be given in a single dose or in two or more divided doses.
The compound or a pharmaceutically acceptable salt of the compound can be assayed in vitro or in vivo for the desired therapeutic or prophylactic activity prior to use in humans. Animal model systems can be used to demonstrate safety and efficacy.
The present methods for treating or preventing a GnRH-related disorder, can further comprise administering another therapeutic agent to the animal being administered the compound or a pharmaceutically acceptable salt of the compound. In one embodiment the other therapeutic agent is administered in an effective amount.
Effective amounts of the other therapeutic agents are well known to those skilled in the art. However, it is well within the skilled artisan's purview to determine the other therapeutic agent's optimal effective amount range. The compound or a pharmaceutically acceptable salt of the compound and the other therapeutic agent can act additively or, in one embodiment, synergistically. In one embodiment of the invention, where another therapeutic agent is administered to an animal, the effective amount of the compound or a pharmaceutically acceptable salt of the compound is less than its effective amount would be where the other therapeutic agent is not administered. In this case, without being bound by theory, it is believed that the compound or a pharmaceutically acceptable salt of the compound and the other therapeutic agent act synergistically.
In one embodiment, the other therapeutic agent is selected from the group consisting of at least one of androgens, estrogens, progesterones, antiestrogens, antiprogestogens, testosterone, angiotensin-converting enzyme inhibitor (such as ENALPRIL or CAPTOPRIL), angiotensin II-receptor antagonist (such as LOSARTAN), renin inhibitor, bisphosphonates (bisphosphonic acids), growth hormone secretagogues (such as MK-0677), 5a-reductase 2 inhibitor (such as finasteride or epristeride) a 5a-reductase 1 inhibitor (such as 4,7b-dimethyl-4-aza-5a-cholestan-3-one, 3-oxo-4-aza-4,7b-dimethyl-16b-(4-chlorophenoxy)-5a-androstane, and 3-oxo-4-aza-4,7b-dimethyl-16b-(phenoxy)-5a-androstane), dual inhibitors of 5a-reductase 1 and 5a-reductase 2 (such as 3-oxo-4-aza-17b-(2,5-trifluoromethylphenyl-carbamoyl)-5a-androstan), antiandrogens (such as flutamide, casodex and cyproterone acetate), alpha-1 blockers (such as prazosin, terazosin, doxazosin, tamsulosin, and alfuzosin), growth hormone, and luteinizing hormone releasing compounds (such as a peptide, including leuprorelin, gonadorelin, buserelin, triptorelin, goserelin, nafarelin, histrelin, deslorelin, meterlin and recirelin, or a natural hormone or analog thereof).
For example, when used with compounds or pharmaceutically acceptable salts of compounds of the present invention: androgens, estrogens, progesterones, antiestrogens and antiprogestogens find use in the treatment of endometriosis, fibroids, and in contraception; testosterone or other androgens or antiprogestogens find use in men as a contraceptive; angiotensin-converting enzyme inhibitors, angiotensin II-receptor antagonists, and renin inhibitor find use in the treatment of uterine fibroids; bisphosphonates (bisphosphonic acids) and growth hormone secretagogues find use in the treatment and prevention of disturbances of calcium, phosphate and bone metabolism, in particular, for the prevention of bone loss during therapy with the GnRH antagonist, and in combination with estrogens, progesterones, antiestrogens, antiprogesterones and/or androgens for the prevention or treatment of bones loss or hypogonadal symptoms such as hot flashes during therapy with the GnRH antagonist; and growth hormone, growth hormone releasing hormone or growth hormone secretagogues, to delay puberty in growth hormone deficient children. Additional therapeutic agents useful in combination with the compounds or pharmaceutically acceptable salts of compounds of the present invention include 5a-reductase 2 inhibitor, 5a-reductase 1 inhibitor, dual inhibitors of 5a-reductase 1 and 5a-reductase 2, antiandrogens, alpha-1 blockers, and compounds having luteinizing hormone releasing activity.
In one embodiment, the compound or a pharmaceutically acceptable salt of the compound is administered concurrently with another therapeutic agent.
In one embodiment, a composition comprising an effective amount of the compound or a pharmaceutically acceptable salt of the compound and an effective amount of another therapeutic agent within the same composition can be administered.
In another embodiment, a composition comprising an effective amount of the compound or a pharmaceutically acceptable salt of the compound and a separate composition comprising an effective amount of another therapeutic agent can be concurrently administered. In another embodiment, an effective amount of the compound or a pharmaceutically acceptable salt of the compound is administered prior to or subsequent to administration of an effective amount of another therapeutic agent. In this embodiment, the compound or a pharmaceutically acceptable salt of the compound is administered while the other therapeutic agent exerts its therapeutic effect, or the other therapeutic agent is administered while the compound or a pharmaceutically acceptable salt of the compound exerts its preventative or therapeutic effect for treating or preventing a GnRH-related disorder.
Thus, in one embodiment, the invention provides a composition comprising an effective amount of the compound or a pharmaceutically acceptable salt of the compound of the present invention and a pharmaceutically acceptable carrier.
In another embodiment, the composition further comprises a therapeutic agent selected from the group consisting of androgen, estrogen, progesterone, antiestrogen, antiprogestogen, testosterone, angiotensin-converting enzyme inhibitor, angiotensin II-receptor antagonist, renin inhibitor, bisphosphonate, growth hormone secretagogue, 5a-reductase 2 inhibitor, a 5a-reductase 1 inhibitor, a dual inhibitor of 5a-reductase 1 and 5a-reductase 2, antiandrogen, alpha-1 blockers, growth hormone, and luteinizing hormone releasing compound; or a combination thereof.
In another embodiment, the pharmaceutically acceptable carrier is suitable for oral administration and the composition comprises an oral dosage form.
Therapeutic or Prophylactic Uses
In one embodiment, the compounds or pharmaceutically acceptable salts of the compounds of the present invention are useful as GnRH receptor antagonists. Accordingly, the compounds and pharmaceutically acceptable salts of the compounds of the present invention are useful for treating a mammal with a GnRH-related disorder.
In one embodiment, the invention provides a method for treating a GnRH-related disorder, comprising administering to a mammal in need thereof a compound or a pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II) in an amount effective to treat a GnRH-related disorder. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
In one embodiment, the GnRH-related disorder is a sex hormone-related condition.
In one embodiment, the GnRH-related disorder is a sex hormone-dependent cancer. In another embodiment, the GnRH-related disorder is prostate cancer, testicular cancer, uterine cancer, ovarian cancer, breast cancer, or pituitary gonadotrophe adenomas. In one embodiment, the GnRH-related disorder is breast cancer.
In another embodiment, the GnRH-related disorder is endometriosis, polycystic ovarian disease, uterine fibroids, primary hirsutism, luteinizing hormone surge, or precocious puberty.
In another embodiment, the invention provides a method for preventing pregnancy, comprising administering to a female mammal the compound or pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II) in an amount effective to prevent pregnancy. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
In yet another embodiment, the methods of the present invention further comprise administering to the mammal a therapeutic agent selected from the group consisting of androgen, estrogen, progesterone, antiestrogen, antiprogestogen, testosterone, angiotensin-converting enzyme inhibitor, angiotensin II-receptor antagonist, renin inhibitor, bisphosphonate, growth hormone secretagogue, 5a-reductase 2 inhibitor, a 5a-reductase 1 inhibitor, a dual inhibitor of 5a-reductase 1 and 5a-reductase 2, antiandrogen, alpha-1 blockers, growth hormone, and luteinizing hormone releasing compound; or a combination thereof.
In one embodiment, the present invention is directed to a method for modulating the activity of a Gonadotropin Releasing Hormone receptor, comprising contacting the receptor with an effective amount of a compound or pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II). In one embodiment, the method further comprises determining the activity of the receptor. In one embodiment, the step of determining the activity of the receptor is performed before the step of contacting the receptor with the compound or a pharmaceutically acceptable salt of the compound. In another embodiment, the step of determining the activity of the receptor is performed after the step of contacting the receptor with the compound or a pharmaceutically acceptable salt of the compound. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
The compounds and pharmaceutically acceptable salts of the compounds of Formula (I) or Formula (II) are also useful in the manufature of medicaments for treating a GnRH-related disorder in a mammal. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
Accordingly, in one embodiment, the invention provides the use of a compound or pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II) for the manufacture of a medicament for treating a GnRH-related disorder. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
In one embodiment, the GnRH-related disorder is a sex hormone-related condition.
In one embodiment, the GnRH-related disorder is a sex hormone-dependent cancer. In another embodiment, the GnRH-related disorder is prostate cancer, testicular cancer, uterine cancer, ovarian cancer, breast cancer, or pituitary gonadotrophe adenomas. In one embodiment, the GnRH-related disorder is breast cancer.
In another embodiment, the GnRH-related disorder is endometriosis, polycystic ovarian disease, uterine fibroids, primary hirsutism, luteinizing hormone surge, or precocious puberty.
In another embodiment, the invention provides the use of a compound or pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II) in the manufacture of a medicament for preventing pregnancy in a female mammal. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
In yet another embodiment, the uses of the compounds or pharmaceutically acceptable salts of compounds of the present invention further comprise the use of a therapeutic agent selected from the group consisting of androgen, estrogen, progesterone, antiestrogen, antiprogestogen, testosterone, angiotensin-converting enzyme inhibitor, angiotensin II-receptor antagonist, renin inhibitor, bisphosphonate, growth hormone secretagogue, 5a-reductase 2 inhibitor, a 5a-reductase 1 inhibitor, a dual inhibitor of 5a-reductase 1 and 5a-reductase 2, antiandrogen, alpha-1 blockers, growth hormone, and luteinizing hormone releasing compound; or a combination thereof in the manufacture of the medicaments of the present invention.
In one embodiment, the present invention is directed to the use of a compound or pharmaceutically acceptable salt of the compound of Formula (I) or Formula (II) for the manufacture of a medicament for modulating the activity of a Gonadotropin Releasing Hormone receptor. In one embodiment, the medicament is also for determining the activity of the receptor. In another embodiment, the compound or pharmaceutically acceptable salt of the compound is of the Formula (IA), (IB), (IC), or (ID).
EXAMPLES
General Methods:
The following HPLC and LC/MS methods were used for the syntheses outlined in the Examples.
Method A: Column: Xterra MS C18, 5 μ, 50×2.1 mm. Mobile phase: 90/10-5/95 water (0.1% formic acid)/acetonitrile (0.1% formic acid), 2 minutes, hold 1.5 minutes. Flow rate: 0.8 mL/min. Detection: 210-400 nm.
Method B: Column: Xterra reverse phase 18, 3.5 μ, 150×4.6 mm. Mobile phase: 85/15 to 5/95 ammonium formate buffer (pH=3.5)/acetonitrile and methanol (1:1) for 10 minutes, hold 4 minutes. Flow rate: 1.2 mL/min. Detection: 210-370 nm.
Method C: YMC CombiPrep ProC18 50×20 mm I.D. column, S-5 μm, 12 nm. Flow rate 20 mL/minute. Gradient: 10/90 Acetonitrile/Water (0.1 % TFA in both solvents) to 100% acetonitrile over 10 minutes then hold for three minutes at 100% acetonitrile and ramp back to 10/90 acetonitrile/water over two minutes.
Example 1




6-Bromo-quinoxaline: In a round bottom flask under nitrogen was combined 4-bromo-benzene-1,2-diamine (2.01 g, 10.7 mmol), methanol (50 mL), and glyoxal (40% by wt. 3.1 mL, 26.9 mmol) and the resulting solution stirred overnight. The reaction was then concentrated in vacuo and purified by flash column chromatography on silica gel using 5-10% ethyl acetate in dichloromethane as eluant to yield 1.14 g (50% yield) of 6-Bromo-quinoxaline as a yellow-orange solid. 1H NMR (DMSO-d6): 9.00 (d,2H,J=2.8 Hz), 8.36 (d,1H,J=2.2 Hz), 8.07 (d,1H,J=9.0 Hz), 8.02 (dd,1H,J=8.8,2.1 Hz). CHN for C8H5BrN2: calc. C 45.97, H 2.41, N 13.4; found C 45.99, H 2.09, N 13.09. LC/MS (Method A): r.t.=1.10 min., purity=99%, calculated mass=208, [M+H]+=209/211. HPLC (Method B): r.t.=7.4 min., purity=98.52% at 210-370 and 98.8% at 322 nm.
Example 2




6-Vinyl-quinoxaline: A mixture of 6-Bromo-quinoxaline (1.05 g, 5.02 mmol), palladium tetrakistriphenylphosphine (0.232 g, 0.2 mmol), and lithium chloride (0.639 g, 15.1 mmol) in dry toluene (50 mL) under nitrogen was treated with tributylvinyl tin (4.4 mL, 15.1 mmol) and heated to 100° C. for three hours. After cooling to room temperature the mixture was partitioned between ethyl acetate (200 mL) and water (100 mL). The aqueous layer was discarded and the organics washed with brine (2×100 mL), dried with magnesium sulfate, filtered, and concentrated to dryness on a rotary evaporator. Purification by flash column chromatography on silica gel using 10% ethyl acetate in dichloromethane as eluant yielded 680 mg (87% yield) of 6-Vinyl-quinoxaline as a light orange solid. 1H NMR (DMSO-d6): 8.92 (dd,2H,J=14.1,1.9 Hz), 8.10 (m,3H), 7.03 (dd,1H,J=17.7,10.9 Hz), 6.15 (dd,1H,J=17.7,0.4 Hz), 5.52 (d,1H,J=11.1 Hz). LC/MS (Method A): r.t.=1.14 min., purity=99%, calculated mass=156, [M+H]+=157.
Example 3




Quinoxaline-6-carbaldehyde: To a mixture of 6-Vinyl-quinoxaline (0.68 g, 4.35 mmol) in dioxane (44 mL) and water (35 mL) was added osmium tetraoxide (2.5% wt in t-BuOH, 2.18 mL, 0.17 mmol) followed by sodium periodate (2.79 g, 13.1 mmol) and the reaction stirred for 3 h. The solution was diluted with ethyl acetate (150 mL) and then washed with water (3×75 mL) followed by brine (75 mL). The organics were dried with magnesium sulfate, filtered, and concentrated in vacuo. Purification by flash column chromatography on silica gel using 10-20% ethyl acetate in dichloromethane as eluant yielded 470 mg (68% yield) of Quinoxaline-6-carbaldehyde as a white solid. 1H NMR (DMSO-d6): 10.30 (s,1H), 9.11 (d,2H,J=1.9 Hz), 8.74 (d,1H,J=1.4 Hz), 8.26 (m,2H). LC/MS (Method A): r.t.=0.69 min., purity=94.8%, calculated mass=158, [M+H]+=159.
Example 4




1-Ethyl-5-methyl-1H-imidazole-4-carbaldehyde: 5-Methyl-1H-imidazole-4-carbaldehyde (940 mg, 8.5 mmol) was dissolved in THF (40 mL) with DMF (5 mL). NaH (380 mg of a 60% dispersion in mineral oil) was added carefully and the reaction mixture was allowed to stir for 5 min. under nitrogen. Ethyl iodide (1.65 g, 9.7 mmol) was added and it was allowed to stir for 1 h. The solvent was removed in vacuo, and the crude was purified on silica eluted with 100% ethyl acetate—1% MeOH/ethyl acetate to yield the title product (390 mg) as the main isomer. MS (ESI-POS): [M+H]+=139.
Example 5




1-Ethyl-5-methyl-1H-imidazole-4-carbaldehyde: 5-Methyl-1H-imidazole-4-carbaldehyde (940 mg, 8.5 mmol) was dissolved in THF (40 mL) with DMF (5 mL). NaH (380 mg of a 60% dispersion in mineral oil) was added carefully and the reaction mixture was allowed to stir for 5 min. under nitrogen. Ethyl iodide (1.65 g, 9.7 mmol) was added and it was allowed to stir for 1 h, at which time the reaction was judged complete. The solvent was removed under vacuum, and the crude was purified on silica eluted with 100% ethyl acetate—1%MeOH/ethyl acetate to yield the title product (390 mg) as the main isomer. MS (ESI-POS): [M+H]+=139.
Example 6




1-Ethyl-2,4-dioxo-1,2,3,4-tetrahydro-pyrimidine-5-carbaldehyde: A suspension of 5-formyluracil (0.84 g, 6.0 mmol) in anhydrous dimethylformamide (12 mL) under a nitrogen atmosphere was cooled to −40° C. The reaction mixture was treated with sodium hydride (60% mineral oil dispersion, 0.26 g, 6.6 mmol), stirred 30 min., then treated with iodoethane (0.53 mL, 6.6 mmol). The mixture warmed to 20° C. over 3 h., then was brought to 40° C. for 48 h. At this time the reaction mixture was cooled to room temperature, treated with methanol (5 mL) and evaporated to dryness under reduced pressure. The residue was purified by chromatography on silica gel eluted with a gradient of ethyl acetate in hexanes (1:3 to 1:2 to 1:1) to leave the product (0.25 g) as a white powder. MS (ESI-POS): [M+H]+=169.
Example 7




3-Methyl-pyrido[2,3-b]pyrazine: Pyridine-2,3-diamine (2.50 g, 22.9 mmol) was stirred in methanol (100 mL) and cooled in an ice bath and pyruvic aldehyde (40% wt., 4.20 mL, 27.5 mmol) was added, dropwise, and the solution was allowed to warm to room temperature and stirred, under nitrogen for 18 h. The solvent was removed in vacuo to provide a black oil (4.23 g). This material was adsorbed onto silica gel and purified by column chromatography, eluting with a solution of 95:5 chloroform:acetone to afford a dark red solid (2.96 g, 89% yield). HPLC (Method B): r.t.=3.2 min., purity 99.2% purity at 210-370 nm, 99.8% at 238 nm, Calculated mass=145.06, [M+H]+=146.
Example 8




Pyrido[2,3-b]pyrazine-3-carbaldehyde: 3-Methyl-pyrido[2,3-b]pyrazine (1.00 g, 6.89 mmol) and selenium dioxane (800 mg, 7.2 mmol) were heated to reflux in 1,4-dioxane (70 mL) and distilled water (2 mL), under nitrogen, for 4 h. The reaction mixture was cooled to room temperature, allowed to stand for 16 h, filtered through diatomaceous earth, washed with ethyl acetate (50 mL) and the filtrate concentrated under reduced pressure. The residue was treated with dichloromethane (75 mL) and stirred for 30 min. The dichloromethane-soluble portion was added to a column of silica gel and eluted with ethyl acetate to leave the product aldehyde as a light brown solid (254 mg). LC/MS (Method A): r.t.=0.37 min., purity=97.8%, calculated mass=159, [M+H]+=160.
Example 9




Quinoxaline-2-carbaldehyde: 2-Methyl-quinoxaline (1.00 mL, 7.75 mmol) and selenium dioxane (946 mg, 8.53 mmol) were heated to 90° C. (oil bath temperature) in 1,4-dioxane (6 mL) and distilled water (4 mL), under nitrogen, for 18 h. The solvent was removed, in vacuo, and the material dissolved in ethyl acetate (100 mL) and solid selenium precipitate formed and was filtered out of solution. The organic phase was washed with saturated sodium bicarbonate solution (3×100 mL). The bicarbonate washings were combined and extracted with ethyl acetate (2×100 mL). The organic extracts were combined and washed with brine (150 mL), dried (MgSO4), filtered and the solvent removed in vacuo to give a red solid (440 mg). This material was adsorbed onto silica gel and purified by column chromatography, eluting with a solution of 4:1 hexane:ethyl acetate to afford a tan solid (180 mg, 15% Yield). 1H NMR 300 MHz (DMSO): δ=□0.20 (s, 1H), 9.40 (s, 1H), 8.35 (dd, 1H, J=7.9 Hz, J=1.5 Hz), 8.25 (dd, 1H, J=7.7 Hz, J=1.1 Hz), 8.08 (m, 2H).
Example 10




6-Methyl-quinoxaline: A solution of 4-methyl-1,2-phenylenediamine (5.0 g, 41 mmol) in methanol (250 mL) was treated with a solution of 40% aqueous glyoxal and stirred for 16 h. The solvent was evaporated and the residue was distilled under vacuum (2 mm Hg, 85-88° C.) to leave a colorless oil (1.5 g, 25%). LC/MS (Method A): r.t.=1.02 min., purity=99.5%.
Example 11




6-Bromomethyl-quinoxaline: A mixture of 6-methylquinoxaline (1.5 g, 10.4 mmol), N-bromosuccinimide (2.2 g, 12.5 mmol) and benzoylperoxide (0.30 g, 1.25 mmol) in benzene (35 mL) was stirred rapidly and heated to reflux for 5 h. Upon cooling, the mixture was diluted with ethyl acetate (25 mL), washed with IN sodium hydroxide solution (50 mL) and saturated sodium chloride solution (50 mL). The organic layer was dried (MgSO4) and evaporated to a crystalline solid (2.5 g, 77% desired product, 23% α,α-dibrominated product as determined by 1H NMR). The mixture was used in subsequent reactions.
Example 12




8-Bromo-2-(4-tert-butyl-phenyl)-imidazo[1,2-a]pyridine: 2-Amino-3-bromopyridine (0.250 g, 1.45 mmol) and 4-tert-butylphenacyl chloride (0.306 g, 1.45 mmol) were dissolved in isopropanol (4.5 mL) and treated with sodium bicarbonate (0.146 g, 1.74 mmol). The mixture was stirred in a sealed tube at 80° C. for 48 h. The mixture was concentrated under reduced pressure and redissolved in ethyl acetate (30 mL). The organic mixture was washed with water and saturated sodium chloride, dried over magnesium sulfate, filtered and concentrated under reduced pressure. The crude material was purified by flash silica gel chromatography, eluting with 10% acetone/hexane to give 0.370 g (77%) of the title compound. HPLC (Method B): r.t.=10.7 min., purity 100% at 210-370 nm, 99.3% at 252 nm. HRMS: calcd for C17H17BrN2+H+, 329.06478; found (ESI, [M+H]+), 329.0662.
Example 13




2-(4-tert-Butyl-phenyl)-8-chloro-imidazo[1,2-a]pyridine: Using 2-amino-3-chloropyridine prepared by a known method (Org. Lett., 5:1369-1372 (2003)) in place of 2-amino-3-bromopyridine, 2-(4-tert-butyl-phenyl)-8-chloro-imidazo[1,2-a]pyridine was prepared following the procedure outlined in Example 12. The crude material was purified by flash silica gel chromatography, eluting with 1% methanol/dichloromethane (Rf=0.65) to give (44.5%) of the title compound. MS (ESI) m/z 285; HPLC (Method B): r.t.=10.6 min., purity 99.1% at 210-370 nm, 98.5% at 250 nm. HRMS: calcd for C17H17C1N2+H+, 285.11530; found (ESI, [M+H]+), 285.1135.
Example 14




2-(4-tert-Butyl-phenyl)-8-piperazin-1-yl-imidazo[1,2-a]pyridine: To a flask containing 8-bromo-2-(4-tert-butyl-phenyl)-imidazo[1,2-a]pyridine (0.313 g, 0.951 mmol) was added tris(dibenzylidineacetone)dipalladium(0) (0.087 g, 0.0.0951 mmol), 2-(di-tert-butylphosphino)biphenyl (0.028 g, 0.0951 mmol), sodium tert-butoxide (0.183 g, 1.90 mmol) and piperazine (0.409 g, 4.76 mmol). The solid reagents were then suspended in degassed toluene (22 mL). The mixture was purged with nitrogen and heated to 115° C. for 2 h. The reaction mixture was concentrated to dryness under reduced pressure. The crude mixture was purified by flash silica gel chromatography, eluting with 15% methanol/chloroform to give 0.242 g (76%) of the title compound. MS (ES) m/z 335.1; HPLC (Method B): r.t.=8.4 min., purity 98.6% at 210-370 nm. HRMS: calcd for C21H26N4+H+, 335.22302; found (ESI, M+H), 335.2236.
Example 15




4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazine-1-carboxylic acid benzyl ester: To a flask containing the aryl chloride 2-(4-tert-Butyl-phenyl)-8-chloro-imidazo[1,2-a]pyridine (0.140 g, 0.49 mmol) was added palladium(II) acetate (0.010 g, 0.04 mmol), 2-(di-tert-butylphosphino)biphenyl (0.020 g, 0.07 mmol), sodium tert-butoxide (0.067 g, 0.70 mmol) and Cbz-piperazine (9.6 mL, 50 mmol). The mixture was purged with nitrogen and heated to 100° C. for 24 h in a sealed tube. The reaction was about 50% complete at 24 h by LC/MS monitoring, so an additional amount (equivalent to original amount) of catalyst, ligand, and base was added and heating was resumed for another 3 h. The reaction mixture was cooled to room temperature and diluted with ethyl acetate (100 mL), which was washed with water and brine. The ethyl acetate was dried with MgSO4 and concentrated. The crude mixture was purified by flash silica gel chromatography, eluting with 25% ethyl acetate/hexane (Rf=0.4) to give 0.16 g (70%) of the title compound. MS (ESI) m/z 469; HPLC (Method B): r.t.=11.8 min., purity 94.7% at 210-370 nm, 98.0% at 240 nm. HRMS: calcd for C29H32N4O2+H+, 469.25980; found (ESI, [M+H]+), 469.2582.
The Cbz-protecting group was removed by catalytic hydrogenation to give 2-(4-tert-Butyl-phenyl)-8-piperazin-1-yl-imidazo[1,2-a]pyridine in 82.3% yield.
Example 16




2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridine: A solution of 2-aminopyridine (0.512 g, 5.44 mmol) and 4-tert-butylphenacyl chloride (1.26 g, 5.98 mmol) in isopropanol (16 mL) was treated with sodium bicarbonate (0.914 g, 10.9 mmol) and heated in a sealed tube at 80° C. overnight. The mixture was concentrated under reduced pressure, re-dissolved in ethyl acetate (200 mL) and washed with water (2×100 mL) and saturated sodium chloride (100 mL). The organic layer was dried over magnesium sulfate, filtered and concentrated under reduced pressure. The crude material was purified by flash silica gel chromatography, eluting with 20% acetone/hexanes to yield 0.841 g (62%) of the purified product. MS (ESI) m/z 251.1528; HPLC (Method B): r.t.=8.4 min., purity 100% at 210-370 nm, 100% at 306 nm. HRMS: calcd for C17H18N2+H+, 251.15427; found (ESI, [M+H]+), 251.1528.
Example 17




5-Bromo-2-(4-tert-butyl-phenyl)-imidazo[1,2-a]pyridine: A solution of 2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridine (0.626 g, 2.50 mmol) in THF (17 mL) was cooled to −78° C. The solution was treated with n-butyllithium (1.72 mL of 1.6 M solution in hexanes, 2.75 mmol) dropwise. The solution was stirred at −78° C. for 30 minutes, and then treated dropwise with a solution of 1,2-dibromotetrafluoroethane (0.715 g, 2.75 mmol) in THF (2 mL). Stirring at −78° C. was continued for 5 minutes, and the reaction was warmed to room temperature over 20 minutes. After quenching with water (50 mL), the mixture was extracted with ethyl acetate (100 mL). The organic layer was washed with saturated sodium chloride (25 mL), dried over magnesium sulfate, filtered and concentrated under reduced pressure. Unreacted starting material was removed from the crude product mixture by flash silica gel chromatography, eluting with 20% acetone/hexanes to furnish a 76% yield (0.281 g as mixture of three isomeric bromides) based on recovered starting material. The mixture was separated by preparative HPLC for isomer characterization. Alternatively, the mixture could be used directly in the next step.
Major Isomer (a); 5-bromo-2-(4-tert-butylphenyl)imidazo[1,2-a]pyridine: MS (ESI) m/z 329.0642; HPLC (Method B): r.t.=11.1 min., purity 100% at 210-370 mn, 100% at 252 nm. HRMS: calcd for C17H17BrN2+H+, 329.06478; found (ESI, [M+H]+), 329.0642.
Minor Isomer (b); 8-bromo-2-(4-tert-butylphenyl)imidazo[1,2-a]pyridine: HPLC (Method B): r.t.=10.7 min., purity 100% at 210-370 nm, 99.3% at 252 nm. HRMS: calcd for C17H17BrN2+H+, 329.06478; found (ESI, [M+H]+), 329.0662.
Minor Isomer (c); 3-bromo-2-(4-tert-butylphenyl)imidazo[1,2-a]pyridine: MS (ESI) m/z 329.0639; HPLC (Method B): r.t.=11.1 min., purity 96.3% at 210-370 nm, 96.8% at 248 nm. HRMS: calcd for C17H17BrN2+H+, 329.06478; found (ESI, [M+H]+), 329.0639.
Example 18




2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-imidazo[1,2-a]pyridine: The mixture of isomeric bromides prepared in Example 17 (0.054 g, 0.165 mmol) was dissolved in DMSO (3.5 mL) and treated with piperazine (0.568 g, 6.60 mmol). The mixture was shaken at 160° C. overnight. The mixture was diluted with ethyl acetate (20 mL) and washed with 10% HCl (2×20 mL). The aqueous layers were separated, basified with saturated sodium carbonate and re-extracted with ethyl acetate (3×20 mL). The organic solution was dried over magnesium sulfate, filtered and concentrated under reduced pressure to yield 0.051 g of crude material. The crude material could be purified by semi-preparative RP-HPLC (Method C). The purified fractions were combined and concentrated under reduced pressure to remove acetonitrile. The aqueous residue was basified with saturated sodium carbonate and extracted with ethyl acetate (3×15 mL). The organic extracts were dried over magnesium sulfate, filtered and concentrated under reduced pressure to yield 13 mg (25%) of the title compound. Alternatively, the crude material could be used directly in the next step. HPLC (Method B): r.t.=6.2 min., purity 100% at 210-370 nm, 97.4% at 250 nm. HRMS: calcd for C21H26N4+H+, 335.22302; found (ESI, [M+H]+), 335.2228.
Example 19




2-(4-tert-Butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridine: 2-Aminopyridine was converted to 1,2-diaminopyridinium iodide from a known literature method (J. Org. Chem., 31:260-265 (1996)). 1,2-Diaminopyridinium iodide (0.270 g, 1.1 mmol) was treated with 4-tert-butyl-benzoyl chloride (0.432 g, 2.2 mmol) in pyridine (2 mL). The reaction was heated at 85° C. in a sealed tube for 3 h, at which time the mixture was cooled to room temperature. The reaction was partitioned between ethyl acetate (50 mL) and water (50 mL). The ethyl acetate extract was dried over magnesium sulfate and concentrated. The crude material was purified by flash silica gel chromatography, eluting with 25% ethyl acetate/hexanes (Rf=0.4) to yield 0.205 g (74%) of the purified product. MS (ES) m/z 252.2; HPLC (Method B): r.t.=6.7 min., purity 100% at 210-370 nm, 100% at 254 nm. HRMS: calcd for C16H17N3+H+, 252.14952; found (ESI, [M+H]30 ), 252.149.
Example 20




2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-[1,2,4]triazolo[1,5-a]pyridine: The lithiation and bromination procedure was performed according to a known literature method (J. Org. Chem., 57:5538-5540 (1992)). To 2-(4-tert-butylphenyl)[1,2,4]triazolo[1,5-a]pyridine (125 mg, 0.5 mmol) in THF (3 mL) at −78° C. was added n-butyllithium (220 μL of 2.5 M solution in hexanes, 0.55 mmol). The reaction was stirred for 30 min at −78° C. and then treated dropwise with a solution of 1,2-dibromotetrafluoroethane (66 μL, 0.55 mmol). Stirring at −78° C. was continued for 5 minutes, and the reaction was warmed to room temperature over 20 minutes. After quenching with water (5 mL), the mixture was extracted with ethyl acetate (40 mL). The organic layer was dried over magnesium sulfate, filtered and concentrated under reduced pressure. The crude material was purified by flash silica gel chromatography, eluting with 25% ethyl acetate/hexanes to yield 20 mg (12.1%) of the purified product, 5-Bromo-2-(4-tert-butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridine (I13369-101). LC/MS (Method A): r.t.=2.0 min. purity 97.4%, calculated mass=330 [M+H]+=330 and 332.
5-Bromo-2-(4-tert-butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridine (20 mg, 60 μM) and piperazine (21 mg, 244 μM) in DMSO was heated at 80° C. for 8 h. The reaction was cooled and diluted with ethyl acetate (25 mL) and water (25 mL). After partitioning the ethyl acetate layer was washed with water (3×) and dried over magnesium sulfate. After filtering and concentration the title compound was obtained in 80% yield. LC/MS (Method A): r.t.=1.26 min. calculated mass=335 [M+H]+=336.
Example 21




6-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline: 2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-imidazo[1,2-a]pyridine (0.086 g, 0.258 mmol) was dissolved in DMSO (1 mL) and treated with 6-bromomethyl-quinoxaline (0.072 g, 0.323 mmol) followed by diisopropylethylamine (0.046 mL, 0.258 mmol). The mixture was stirred at room temperature overnight and diluted with ethyl acetate (10 mL). The solution was washed with water and saturated sodium chloride, dried over magnesium sulfate, filtered and concentrated under reduced pressure to yield the crude product. Purification by flash silica gel chromatography (40-50% acetone/hexanes) gave 0.0362 g (29%) of the title compound. HPLC (Method B): r.t.=9.6 min., purity 100% at 210-370 nm, 96.0% at 238 nm. HRMS: calcd for C30H32N6+H+, 477.27612; found (ESI, [M+H]+), 477.2786.
Example 22




3-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-pyrido[2,3-b]pyrazine: Crude 2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-imidazo[1,2-a]pyridine (0.100 g, 0.298 mmol) and pyrido[2,3-b]pyrazine-3-carbaldehyde (0.062 g, 0.378 mmol) was dissolved in NMP (5 mL). The mixture was treated with 3 drops of glacial acetic acid, followed by sodium triacetoxyborohydride (0.126 g, 0.596 mmol.) The mixture was stirred at room temperature overnight and then purified by semipreparative RP-HPLC (Method C) followed by basification as in example 18 to obtain 0.0155 g of the title compound (11%). HPLC (Method B): r.t.=9.0 min., purity 85.2% at 210-370 nm, 81.1% at 252 nm. HRMS: calcd for C29H31N7+H+, 478.27137; found (ESI, [M+H]+), 478.271.
Example 23




2-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline: Prepared as described in Example 22, but using quinoxaline-2-carbaldehyde in place of pyrido[2,3-b]pyrazine-3-carbaldehyde. HPLC (Method B): r.t.=10.5 min., purity 100% at 210-370 nm, 96.9% at 238 nm. HRMS: calcd for C30H32N6+H+, 477.27612; found (ESI, [M+H]+), 477.2762.
Example 24




2-(4-tert-Butyl-phenyl)-5-[4-(2-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine: Prepared as in Example 22, but using 2-ethyl-5-methyl-1H-imidazole-4-carbaldehyde with 1,2-dichlorethane as the solvent, which was removed under reduced pressure prior to purification as described for example 18. MS (ES) m/z 455.2; HPLC (Method B): r.t.=7.6 min., purity 100% at 210-370 nm, 99.3% at 252 nm. HRMS: calcd for C28H36N6+H+, 457.30742; found (ESI, [M+H]+), 457.3081.
Example 25




5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-1-ethyl-1H-pyrimidine-2,4-dione: Prepared following the procedure of Example 22 using as the aldehyde 1-ethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carbaldehyde with dichloromethane as the solvent, which was removed under reduced pressure prior to purification as described for example 18. HPLC (Method B): r.t.=7.1 min., purity 82.1% at 210-370 nm, 81.3% at 252 nm. HRMS: calcd for C28H34N6O2+H+, 487.28160; found (ESI, [M+H]+), 487.2806.
Example 26




5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}-1H-pyrimidine-2,4-dione: Prepared following the procedure of Example 22 using as the aldehyde 5-formyluracil with dichloromethane as the solvent, which was removed under reduced pressure prior to purification as described for example 18. HPLC (Method B): r.t.=6.5 min., purity 90.1% at 210-370 nm, 90.5% at 252 nm. HRMS: calcd for C26H30N6O2+H+, 459.25030; found (ESI, [M+H]+), 459.2493.
Example 27




5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1H-pyrimidine-2,4-dione: The piperazine derivative 2-(4-tert-Butyl-phenyl)-8-piperazin-1-yl-imidazo[1,2-a]pyridine (0.101 g, 0.302 mmol) and 5-formyluracil (0.055 g, 0.393 mmol) were dissolved in DMF (4 mL) and treated with 3 drops of glacial acetic acid and sodium triacetoxyborohydride (0.128 g, 0.604 mmol.) The mixture was stirred at room temperature overnight and then purified by semipreparative RP-HPLC (Method C) followed by basification as in example 18 to give 0.0235 g (17%) of the title compound. MS (ESI) m/z 459; MS (ESI) m/z 457; HPLC (Method B): r.t.=8.0 min., purity 74.1% at 210-370 nm, 75.0% at 260 nm. HRMS: calcd for C26H30N6O2+H+, 459.25030; found (ESI-FTMS, [M+H]+), 459.25175.
Example 28




5-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1-ethyl-1H-pyrimidine-2,4-dione: Prepared as in Example 27, but using the aldehyde 1-ethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carbaldehyde. MS (ES) m/z 485.2; HPLC (Method B): r.t.=8.4 min., purity 87.4% at 210-370 nm, 86.7% at 300 nm. HRMS: calcd for C28H34N6O2+H+, 487.28160; found (ESI, [M+H]+), 487.2829.
Example 29




2-(4-tert-Butyl-phenyl)-8-[4-(2-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine: Prepared as in Example 27, but using the aldehyde 2-ethyl-5-methyl-1H-imidazole-4-carbaldehyde in 1,2-dichloroethane as the solvent, which was removed under reduced pressure prior to purification. MS (ES) m/z 457.2; HPLC (Method B): r.t.=8.7 min., purity 93.1% at 210-370 nm, 91.8% at 262 nm. HRMS: calcd for C28H36N6+H+, 457.30742; found (ESI, [M+H]+), 457.3093.
Example 30




2-(4-tert-Butyl-phenyl)-8-[4-(1-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin-1-yl]-imidazo[1,2-a]pyridine: Prepared following the procedure of Example 27, using the aldehyde 1-ethyl-5-methyl-1H-imidazole-4-carbaldehyde in 1,2-dichloroethane as the solvent, which was removed under reduced pressure prior to purification. MS (ESI) m/z 457; HPLC (Method B): r.t.=9.0 min., purity 100% at 210-370 nm, 99.5% at 260 nm. HRMS: calcd for C28H36N6+H+, 457.30742; found (ESI, [M+H]+), 457.3052.
Example 31




6-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline: Prepared following the procedure of Example 27, using the aldehyde quinoxaline-6-carbaldehyde in NMP as the solvent. The crude material was purified by semi-preparative RP-HPLC (Method C) without the use of TFA buffer. Purified product was lyophilized and gave the title compound in 44.2% yield. HPLC (Method B): r.t.=9.6 min., purity 100% at 210-370 nm, 100% at 260 nm. HRMS: calcd for C30H32N6+H+, 477.27612; found (ESI, [M+H]+), 477.2746.
Example 32




2-{4-[2-(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline: Prepared following the procedure of Example 27, using the aldehyde quinoxaline-2-carbaldehyde in NMP as the solvent. The crude material was purified by semi-preparative RP-HPLC (Method C) without the use of TFA buffer. Purified product was lyophilized and gave the title compound in 50% yield. HPLC (Method B): r.t.=10.9 min., purity 100% at 210-370 nm, 100% at 264 nm. HRMS: calcd for C30H32N6+H+, 477.27612; found (ESI, [M+H]+), 477.278.
Example 33




2-{4-[2-(4-tert-Butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridin-5-yl]-piperazin-1-ylmethyl}-quinoxaline: Prepared using according to the procedure outlined in Example 32 using 2-(4-tert-Butyl-phenyl)-5-piperazin-1-yl-[1,2,4]triazolo[1,5-a]pyridine. Workup consisted of partitioning the reaction mixture between ethyl acetate (50 mL) and saturated sodium bicarbonate (50 mL). The organic layer was washed with water (3×50 mL), dried over magnesium sulfate, filtered and concentrated under reduced pressure. The crude material was purified by flash silica gel chromatography, eluting with 50% ethyl acetate/hexanes (Rf=0.20) to yield the purified product in 26% yield. MS (ES) m/z 478.4; HPLC (Method B): r.t.=11.3 min., purity 100% at 210-370 nm, 99.4% at 266 nm. HRMS: calcd for C29H31N7+H+, 478.27137; found (ESI, [M+H]+), 478.2723.
Example 34 
Biological Evaluation
COS cell membranes containing human GnRH receptors were incubated with radioactively labeled D-trp6 GnRH in the presence of increasing concentrations of test compound. Membrane bound radioactivity was measured after separating the free radioactivity by filtration method, and IC50 values were calculated using SAS analysis system. (See, “Receptor-binding Affinity of Gonadotropin-releasing Hormone Analogs: Analysis by Radioligand-receptor assay” Endocrinology, 106:1154-1159 (1980)).
All compounds tested had hGnRH binding IC50's between 1 and 1000 nm.
While particular embodiments of the present invention have been illustrated and described, it would be obvious to those skilled in the art that various other changes and modifications can be made without departing from the spirit and scope of the invention. It is therefore intended to cover in the appended claims all such changes and modifications that are within the scope of this invention.

## Claims

1. A compound of the formula (I):




or a pharmaceutically acceptable salt thereof,
wherein
X is N or C—R28;
Y is Q and Z is R18; or Y is R18 and Z is Q, wherein Q is




Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
R1 and R2 are each independently hydrogen; or linear or branched (C1—C6)-alkyl, (C2—C6)-alkenyl, or (C2—C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, R21, R22, R23, R24, R25, R26, R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or—CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;

R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
X1 is —O-, —NR12-, or —SOm—;
each m is independently 0, 1, or 2; and
each n is independently 0, 1, 2, 3, or 4.

2. The compound of claim 1 of the formula (IA):




or a pharmaceutically acceptable salt thereof,
wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, R27, and R28 are as in claim 1.

3. The compound of claim 1 of the formula (IB):




or a pharmaceutically acceptable salt thereof
wherein Ar, R1, R2, R3, R4, R5, R6, R18, R19, R20, R21, R22, R24, R25, R26, R27, and R28 are as in claim 1.

4. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein Ar is phenyl.

5. The compound or pharmaceutically acceptable salt of the compound of claim 4, wherein one R6 substituent is attached at the 4 position of phenyl.

6. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein R1 is methyl and R2 is hydrogen.

7. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein R4 is methyl or ethyl and R5 is hydrogen.

8. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein when R4 is other than hydrogen, the compound or pharmaceutically acceptable salt of the compound is the S-enantiomer with respect to the carbon to which R4 is bound.

9. The compound or pharmaceutically acceptable salt of the compound of claim 5, wherein the one R6 substituent is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl.

10. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein R3 is

11. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein R3 is

12. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein
R2, R5, R18, R19, R20, R21, R22, R24, R25, R26, and R27 are each hydrogen;
R1 and R4 are each independently hydrogen, methyl, or ethyl;
Ar is phenyl;
one R6 is attached at the 4-position of phenyl and is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and
R3is

13. The compound or pharmaceutically acceptable salt of the compound of claim 1, wherein the compound is
6-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}- quinoxaline;
3-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1, 2-a]pyridin-5-yl]-piperazin -1-ylmethyl}- pyrido[2,3-b]pyrazine;
2-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin-1-ylmethyl}- quinoxaline;
2—(4-tert-Butyl-phenyl)-5-[4—(2-ethyl-5-methyl -1 H-imidazol-4-ylmethyl)-piperazin -1-yl]- imidazo[1,2-a]pyridine;
5-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin -1-ylmethyl}-1-ethyl-1H-pyrimidine-2,4-dione;
5-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-5-yl]-piperazin -1-ylmethyl}-1 H- pyrimidine-2,4-dione;
5-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1 H-pyrimidine-2,4-dione;
5-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-1- ethyl -1H-pyrimidine-2,4-dione;
2—(4-tert-Butyl-phenyl)-8 -[4—(2-ethyl-5-methyl -1H-imidazol-4-ylmethyl)-piperazin-1yl]- imidazo[1,2-a]pyridine;
2—(4-tert-Butyl-phenyl)-8-[4—(1-ethyl-5-methyl-1H-imidazol-4-ylmethyl)-piperazin -1-yl]- imidazo[1,2-a]pyridine;
6-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline;
2-{4-[2—(4-tert-Butyl-phenyl)-imidazo[1,2-a]pyridin-8-yl]-piperazin-1-ylmethyl}-quinoxaline; and
2-{4-[2—(4-tert-Butyl-phenyl)-[1,2,4]triazolo[1,5-a]pyridin-5-yl]-piperazin-1-ylmethyl}- quinoxaline.

14. A compound of the formula (11):



or a pharmaceutically acceptable salt thereof, wherein
Y is Q and Z is hydrogen; or Y is hydrogen and Z is Q, wherein Q is




R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23; R3 is one of the following:








each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, and R23 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12; R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; (CH2)mCO2R11; or —(CH2)mCONR11R12;
R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
X1 is —O-, —NR12-, or —SOm-;
each m is independently 0, 1, or 2; and each n is independently 0, 1, 2, 3, or 4.

15. The compound or pharmaceutically acceptable salt of the compound of claim 14, wherein
R1 and R4 are each independently hydrogen, methyl, or ethyl;
R2 and R5 are hydrogen;
one R6 is attached at the 4-position of phenyl and is ethyl, t-butyl, —N(CH2CH3)2, pyrrolidine, 2-hydroxymethylpyrrolidine, or isopropyl; and R3is

16. A composition comprising an effective amount of the compound or a pharmaceutically acceptable salt of the compound of claim 1 and a pharmaceutically acceptable carrier.

17. The composition of claim 16, further comprising a therapeutic agent selected from the group consisting of androgen, estrogen, progesterone, antiestrogen, antiprogestogen, testosterone, angiotensin-converting enzyme inhibitor, angiotensin II-receptor antagonist, renin inhibitor, bisphosphonate, growth hormone secretagogue, 5a-reductase 2 inhibitor, a 5a-reductase 1 inhibitor, a dual inhibitor of 5a-reductase 1 and 5a-reductase 2, antiandrogen, alpha-1 blockers, growth hormone, and luteinizing hormone releasing compound; or a combination thereof.

18. The composition of claim 16, wherein the pharmaceutically acceptable carrier is suitable for oral administration and the composition comprises an oral dosage form.

19. A method of synthesizing a compound comprising:
a) reacting an aminopyridine of the formula (III):




wherein R29 is Cl or Br,
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)—alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 hereroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R23 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
X1 is —O—, —NR12—, or SOm−;
R12 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each m is independently 0, 1, or 2;
each n is independently 0, 1, 2, 3, or 4;
under conditions effective to bring about cyclization, thereby providing a compound having the formula (IV):




wherein Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R232, —CON(R23)2, or —(CH2)nOR23; and
R28 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
b) reacting the compound of formula (IV) with a piperazine, thereby providing a compound having the formula (V):




R4, R5, R21, R22, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
c) reacting the free amine of the piperazine of formula (V) under conditions effective to provide a compound of the formula (IA):




wherein R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12; and
each R10 is independently hydrogen; or linear or branched C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
R11 is hydrogen; linear or branched C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S; and
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl.

20. A method of synthesizing a compound comprising:
a) reacting an aminopyridine of the formula (VI):




wherein R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)3; —X1R13; —COR13; —CO2R13; or —CONR(R13)(R14);
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R23 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
X1 is —O—, —NR12—, or SOm−;
R12 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each m is independently 0, 1, or 2;
each n is independently 0, 1, 2, 3, or 4;
under conditions effective to bring about cyclization, thereby providing a compound having the formula (VII):




wherein Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R28 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
b) halogenating the compound of the formula (VII) and reacting with a piperazine, thereby providing a compound having the formula (VIII):




wherein R4, R5, R21, R22, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; and
c) reacting the free amine of the piperazine of formula (VIII) under conditions effective to provide a compound of the formula (IB):




wherein R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
each R10 is independently hydrogen; or linear or branched C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
R11 is hydrogen; linear or branched C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S; and
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl.

21. A method of synthesizing a compound comprising:
a) reacting an aminopyridine of the formula (VI):




wherein R18, R19, and R20 are each independently hydrogen; linear or branched (C 1-C6)- alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R, 3)(R14);
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R23 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
X1 is —O-, —NR12-, or —SOm;
R12 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each m is independently 0, 1, or 2;
each n is independently 0, 1, 2, 3, or 4;
under conditions effective to provide a diaminopyridinium iodide having the formula (IX):




b) reacting the compound of the formula (IX) under conditions effective to bring about cyclization, thereby providing a compound having the formula (X):




wherein Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R 14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
c) halogenating the compound of the formula (X) and reacting with a piperazine, thereby providing a compound having the formula (XI):




wherein R4, R5, R21, R22, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; and
d) reacting the free amine of the piperazine of formula (XI) under conditions effective to provide a compound of the formula (IC):




wherein R, and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or—CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or (CH2)mCONR11R12;
each R10 is independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
R11 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S; and
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl.

22. A method of synthesizing a compound comprising:
a) reacting a hydrazinonitropyridine of the formula (XII):




wherein R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or CON(R13)(R14);
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(C H,)nOR23;
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R23 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; X1 is —O-, —NR12-, or —SOm;
R12 is hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each m is independently 0,1, or 2;
each n is independently 0, 1, 2, 3, or 4; under conditions effective to provide a compound of the formula (XIII):




wherein Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
b) treating the compound of formula (XIII) under conditions effective to bring about isomerization to provide a compound of the formula (XIV):




c) reducing the nitro group to provide a compound of the formula (XV):




d) diazotizing and halogenating the compound of formula (XV) and reacting with piperazine, thereby providing a compound of the formula (XVI):




wherein 1(4, 1(5, R21, R22, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; and
e) reacting the free amine of the piperazine of formula (XVI) under conditions effective to provide a compound of the formula (ID):




wherein R11 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl,
(C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R11 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or—CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; (CH2)mCO2R11; or (CH2)mCONR11R12;
each R10 is independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2—C6)-alkenyl, or (C2-C6)-alkynyl;
R11 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl.

23. A compound of the formula (IA):



prepared by a method comprising:
a) reacting a compound of the formula (III):




under conditions effective to bring about cyclization, thereby providing a compound having the formula (IV):




b) reacting the compound of formula (IV) with a piperazine, thereby providing a compound having the formula (V):




c) reacting the free amine of the piperazine of formula (V) under conditions effective to provide a compound of the formula (IA);
wherein
R29 is Cl or Br;
Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, R21, R22, R23, R24, R25, R26, R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nXiR12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or—CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or —(CH2)mCONR11R12;
R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or
X1 is —O-, —NR12-, or —SOm;
each m is independently 0,1, or 2; and
each n is independently 0, 1, 2, 3, or 4.

24. A compound of the formula (IB):



prepared by a method comprising:
a) reacting an aminopyridine of the formula (VI):




under conditions effective to bring about cyclization, thereby providing a compound having the formula (VII):




b) halogenating the compound of the formula (VII) and reacting with a piperazine, thereby providing a compound having the formula (VIII):




c) reacting the free amine of the piperazine of formula (VIII) under conditions effective to provide a compound of the formula (IB);
wherein
Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27, and R28 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23COR23, —NR23 COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23COR23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX R12; —(CH2)nR17, —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R11; or 4CH2)mCONR11R12; R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(Rn)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or —(CH2)nOR23;
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl ;
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or
X1 is —O-, —NR12-, or —SOm;
each m is independently 0, 1, or 2; and
each n is independently 0, 1, 2, 3, or 4.

25. A compound of the formula (IC):



prepared by a method comprising:
a) reacting an aminopyridine of the formula (VI):




under conditions effective to provide a diaminopyridinium iodide having the formula (IX):




b) reacting the compound of the formula (IX) under conditions effective to bring about cyclization, thereby providing a compound having the formula (X):




c) halogenating the compound of the formula (X) and reacting with a piperazine, thereby providing a compound having the formula (XI):




d) reacting the free amine of the piperazine of formula (XI) under conditions effective to provide a compound of the formula (IC);
wherein
Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R14—C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(GH2)nX1R12; —(CH2)nR17; —COX1R11; —X1R11; —CO2R11; or —CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)mCO2R12; or —(CH2)mCONR11R12;
R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S; R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or CON(R13)(R 14);
X1 is —O-, —NR12-, or —SOm;
each m is independently 0, 1, or 2; and
each n is independently 0,1, 2, 3, or 4.

26. A compound of the formula (ID):



prepared by a method comprising:
a) reacting a hydrazinonitropyridine of the formula (XII):




under conditions effective to provide a compound of the formula (XIII):




b) treating the compound of formula (XIII) under conditions effective to bring about isomerization to provide a compound of the formula (XIV):




c) reducing the nitro group to provide a compound of the formula (XV):




d) diazotizing and halogenating the compound of formula (XV) and reacting with piperazine, thereby providing a compound of the formula (XVI):




e) reacting the free amine of the piperazine of formula (XVI) under conditions effective to provide a compound of the formula (ID);
wherein
Ar is phenyl, 2-thiophenyl or 3-thiophenyl;
R1 and R2 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; or R1 and R2 may together form a three- to seven-membered cycloalkyl group, wherein the cycloalkyl group formed by R1 and R2 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R3 is one of the following:







each R3 also having up to three R10 substituents attached to the ring of R3 containing at least one N;
R4, R5, R10, R21, R22, R23, R24, R25, R26, and R27 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl;
each R6 is independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; —NR13R 14; —C(OH)(CF3)2; —CH(CF3)2; —C(CF3)3; —X1R13; or —COR13; and when the two R6 are ortho to each other, they may together form a five- to seven-membered cyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the cyclic group formed by the ortho R6 groups is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or (CH2)nOR23;
R7 and R9 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; —(CH2)nX1R12; —(CH2)nR17; —COX1Rn; —X1R11; —CO2R11; or—CONR11R12;
R8 is hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; (CH2)mCO2R ; or (CH2)mCONR11R12;
R11 and R12 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or R11 and R12 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R13 and R14 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —R23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; aryl; or aryl optionally substituted with one to three substituents selected from halogen, R15, —OR15, or —NR15R16; or R13 and R14 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S, and wherein the heterocyclic group formed by R13 and R14 is optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, —CON(R23)2, or
R15 and R16 are each independently hydrogen; or linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl; or both R15 and R16 may together form a three- to seven-membered heterocyclic group containing up to 3 heteroatoms selected from N, O, or S;
R17 is phenyl, 2-pyridyl, 3-pyridyl, or 4-pyridyl;
R18, R19, and R20 are each independently hydrogen; linear or branched (C1-C6)-alkyl, (C2-C6)-alkenyl, or (C2-C6)-alkynyl, each optionally substituted with halogen, —N3, —NO2, —CN, —OR23, —SR23, —SO2R23, —SO2N(R23)2, —N(R23)2, —COR23, —CO2R23, —NR23CO2R23, —NR23COR23, —NR23CON(R23)2, or —CON(R23)2; halogen; —NR13R14; —C(OH)(CF3)2; CH(CF3)2; —C(CF3)3; —X1R13; —COR13; —CO2R13; or —CON(R13)(R14);
X1 is —O-, —NR12-, or —SOm-;
each m is independently 0, 1, or 2; and
each n is independently 0, 1, 2, 3, or 4.