##### Table of Contents

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UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549



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FORM 10-Q



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(Mark One)

|x | QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ---------------------------------------------------------------------------------------

For the quarterly period ended June 30, 2006

OR



| ̈ | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ----------------------------------------------------------------------------------------

For the transition period from              to

Commission File Number: 0-25395



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VARIAN SEMICONDUCTOR EQUIPMENT
ASSOCIATES, INC.

(Exact name of Registrant as Specified in its Charter)



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|                                                              |  |                                 
|------------------------------------------------------------- |  | --------------------------------
|State or other jurisdiction of Incorporation or organization: |  | IRS Employer Identification No.:
|Delaware                                                      |  | 77-0501994                      
|                                                              | 
|35 Dory Road, Gloucester, Massachusetts                       |  | 01930                           
|(Address of principal executive offices)                      |  | (Zip code)                      

(978) 282-2000

(Registrants telephone number, including area code)



---

Indicate by check mark whether the Registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934
during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes  x    No ̈

Indicate by check mark whether the Registrant is a large accelerated filer, an accelerated filer, or a non-accelerated filer. See definition of accelerated filer and large accelerated filer in Rule 12b-2
of the Exchange Act. (Check one):

Large accelerated filer  x    Accelerated
filer ̈Non-accelerated filer ̈

Indicate by check mark whether the Registrant is a shell company (as defined in Rule
12b-2 of the Exchange Act).    Yes ̈No  x

Shares of common stock outstanding at August 4, 2006: 55,057,920.



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##### Table of Contents

An index of exhibits filed with this Form 10-Q is located on page 35.

VARIAN SEMICONDUCTOR EQUIPMENT ASSOCIATES, INC.

INDEX



|                                  |  |                                                                                                                       |  |           
|--------------------------------- |  | --------------------------------------------------------------------------------------------------------------------- |  | ----------
|ItemNumber                        |  |                                                                                                                       |  | PageNumber
|PART I.    
FINANCIAL INFORMATION |  |                                                                                                                      
|                                  |  |                                                                                                                      
|Item 1.                           |  | Consolidated Financial Statements                                                                                     |  |           
|                                  |  |                                                                                                                      
|                                  |  | Unaudited Consolidated Balance Sheets at June 30, 2006 and September 30, 2005                                         |  | 1         
|                                  |  | Unaudited Consolidated Statements of Income for the three and nine month periods ended June 30, 2006 and July 1, 2005 |  | 2         
|                                  |  | Unaudited Consolidated Statements of Cash Flows for the nine month periods ended June 30, 2006 and July 1, 2005       |  | 3         
|                                  |  | Notes to the Consolidated Financial Statements (Unaudited)                                                            |  | 4         
|                                  |  |                                                                                                                      
|Item 2.                           |  | Managements Discussion and Analysis of Financial Condition and Results of Operations                                 |  | 18        
|                                  |  |                                                                                                                      
|Item 3.                           |  | Quantitative and Qualitative Disclosures About Market Risk                                                            |  | 27        
|                                  |  |                                                                                                                      
|Item 4.                           |  | Controls and Procedures                                                                                               |  | 28        
|                                  | 
|PART II.    
OTHER INFORMATION    |  |                                                                                                                      
|                                  |  |                                                                                                                      
|Item 1.                           |  | Legal Proceedings                                                                                                     |  | 29        
|                                  |  |                                                                                                                      
|Item 1A.                          |  | Risk Factors                                                                                                          |  | 29        
|                                  |  |                                                                                                                      
|Item 2.                           |  | Unregistered Sales of Equity Securities and Use of Proceeds                                                           |  | 35        
|                                  |  |                                                                                                                      
|Item 3.                           |  | Defaults Upon Senior Securities                                                                                       |  | 35        
|                                  |  |                                                                                                                      
|Item 4.                           |  | Submission of Matters to a Vote of Security Holders                                                                   |  | 35        
|                                  |  |                                                                                                                      
|Item 5.                           |  | Other Information                                                                                                     |  | 35        
|                                  |  |                                                                                                                      
|Item 6.                           |  | Exhibits                                                                                                              |  | 35        
|                                  |  |                                                                                                                      
|                                  |  | Signature                                                                                                             |  | 36        



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##### Table of Contents

PART 1. FINANCIAL INFORMATION

ITEM 1. CONSOLIDATED FINANCIAL STATEMENTS

VARIAN SEMICONDUCTOR EQUIPMENT ASSOCIATES, INC.

UNAUDITED CONSOLIDATED BALANCE SHEETS



|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |  | ----------------------------------------- | ------- | - | ----------------- | - | ------- | -
|                                                                                                                                                                                                   |  | June 30,2006                              |         |   | September 30,2005 |  
|                                                                                                                                                                                                   |  | (Amounts in thousands, except share data) |        
|ASSETS                                                                                                                                                                                             |  |                                           |         |   |                   |   |         |  
|                                                                                                                                                                                                   |  |                                          
|Current assets                                                                                                                                                                                     |  |                                           |         |   |                   |   |         |  
|Cash and cash equivalents                                                                                                                                                                          |  | $                                         | 218,517 |   |                   | $ | 193,426 |  
|Marketable securities                                                                                                                                                                              |  |                                           | 167,176 |   |                   |   | 280,646 |  
|Accounts receivable, net                                                                                                                                                                           |  |                                           | 151,556 |   |                   |   | 123,612 |  
|Inventories                                                                                                                                                                                        |  |                                           | 129,894 |   |                   |   | 127,374 |  
|Deferred income taxes                                                                                                                                                                              |  |                                           | 34,942  |   |                   |   | 30,865  |  
|Other current assets                                                                                                                                                                               |  |                                           | 15,317  |   |                   |   | 32,796  |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total current assets                                                                                                                                                                               |  |                                           | 717,402 |   |                   |   | 788,719 |  
|                                                                                                                                                                                                   |  |                                          
|Long-term marketable securities                                                                                                                                                                    |  |                                           | 131,864 |   |                   |   |        |  
|Property, plant and equipment, net                                                                                                                                                                 |  |                                           | 60,211  |   |                   |   | 58,435  |  
|Goodwill                                                                                                                                                                                           |  |                                           | 12,280  |   |                   |   | 12,280  |  
|Other assets                                                                                                                                                                                       |  |                                           | 4,184   |   |                   |   | 3,385   |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total assets                                                                                                                                                                                       |  | $                                         | 925,941 |   |                   | $ | 862,819 |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|LIABILITIES AND STOCKHOLDERS EQUITY                                                                                                                                                               |  |                                           |         |   |                   |   |         |  
|                                                                                                                                                                                                   |  |                                          
|Current liabilities                                                                                                                                                                                |  |                                           |         |   |                   |   |         |  
|Notes payable and current portion of long-term debt                                                                                                                                                |  | $                                         | 455     |   |                   | $ | 426     |  
|Accounts payable                                                                                                                                                                                   |  |                                           | 47,311  |   |                   |   | 33,272  |  
|Accrued expenses                                                                                                                                                                                   |  |                                           | 56,082  |   |                   |   | 59,280  |  
|Product warranty                                                                                                                                                                                   |  |                                           | 9,671   |   |                   |   | 8,585   |  
|Deferred revenue                                                                                                                                                                                   |  |                                           | 51,742  |   |                   |   | 52,118  |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total current liabilities                                                                                                                                                                          |  |                                           | 165,261 |   |                   |   | 153,681 |  
|                                                                                                                                                                                                   |  |                                          
|Long-term accrued expenses                                                                                                                                                                         |  |                                           | 9,894   |   |                   |   | 10,849  |  
|Deferred income taxes                                                                                                                                                                              |  |                                           | 4,926   |   |                   |   | 5,477   |  
|Long-term debt                                                                                                                                                                                     |  |                                           | 3,391   |   |                   |   | 3,736   |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total liabilities                                                                                                                                                                                  |  |                                           | 183,472 |   |                   |   | 173,743 |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Commitments, contingencies and guarantees (Note 12)                                                                                                                                                |  |                                           |         |   |                   |   |         |  
|                                                                                                                                                                                                   |  |                                          
|Stockholders equity                                                                                                                                                                               |  |                                           |         |   |                   |   |         |  
|Preferred stock, $0.01 par value; 5,000,000 shares authorized; none issued or outstanding                                                                                                          |  |                                           |        |   |                   |   |        |  
|Common stock, $0.01 par value; 150,000,000 shares authorized; 58,134,912 shares issued and 56,214,724 outstanding at June 30, 2006;
57,020,757 shares issued and outstanding at September 30, 2005 |  |                                           | 581     |   |                   |   | 380     |  
|Capital in excess of par value                                                                                                                                                                     |  |                                           | 420,696 |   |                   |   | 382,445 |  
|Retained earnings                                                                                                                                                                                  |  |                                           | 378,100 |   |                   |   | 316,330 |  
|Less: Cost of 1,920,188 shares of common stock held in treasury at June 30, 2006                                                                                                                   |  |                                           | (53,833 | ) |                   |   |        |  
|Deferred compensation                                                                                                                                                                              |  |                                           |        |   |                   |   | (9,366  | )
|Accumulated other comprehensive loss                                                                                                                                                               |  |                                           | (3,075  | ) |                   |   | (713    | )
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total stockholders equity                                                                                                                                                                         |  |                                           | 742,469 |   |                   |   | 689,076 |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  
|Total liabilities and stockholders equity                                                                                                                                                         |  | $                                         | 925,941 |   |                   | $ | 862,819 |  
|                                                                                                                                                                                                   |  |                                           |         |   |                   |   |         |  

The accompanying notes to the unaudited consolidated financial statements are an integral part of these
statements.



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##### Table of Contents

VARIAN SEMICONDUCTOR EQUIPMENT ASSOCIATES, INC.

UNAUDITED CONSOLIDATED STATEMENTS OF INCOME



|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|--------------------------------------------- |  | --------------------------------------------- | ------- | - | ------------------------ | - | ------- | ------------ |  | - | ----------- | - |  | - | ------- | -
|                                              |  | Fiscal Three Months Ended                     |         |   | Fiscal Nine Months Ended |  
|                                              |  | June 30,2006                                  |         |   | July 1,2005              |   |         | June 30,2006 |  |   | July 1,2005 |  
|                                              |  | (Amounts in thousands, except per share data) |        
|Revenue                                       |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Product                                       |  | $                                             | 162,656 |   |                          | $ | 144,227 |              |  | $ | 452,031     |   |  | $ | 367,359 |  
|Service                                       |  |                                               | 20,747  |   |                          |   | 19,902  |              |  |   | 58,801      |   |  |   | 60,584  |  
|Royalty and license                           |  |                                               | 2,783   |   |                          |   | 2,561   |              |  |   | 6,786       |   |  |   | 26,269  |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Total revenue                                 |  |                                               | 186,186 |   |                          |   | 166,690 |              |  |   | 517,618     |   |  |   | 454,212 |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Cost of revenue                               |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Product                                       |  |                                               | 91,869  |   |                          |   | 84,176  |              |  |   | 266,612     |   |  |   | 211,950 |  
|Service                                       |  |                                               | 13,222  |   |                          |   | 12,057  |              |  |   | 36,144      |   |  |   | 37,398  |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Total cost of revenue                         |  |                                               | 105,091 |   |                          |   | 96,233  |              |  |   | 302,756     |   |  |   | 249,348 |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Gross profit                                  |  |                                               | 81,095  |   |                          |   | 70,457  |              |  |   | 214,862     |   |  |   | 204,864 |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Operating expenses                            |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Research and development                      |  |                                               | 22,872  |   |                          |   | 19,351  |              |  |   | 66,731      |   |  |   | 57,081  |  
|Marketing, general and administrative         |  |                                               | 27,829  |   |                          |   | 26,243  |              |  |   | 87,631      |   |  |   | 77,953  |  
|Restructuring                                 |  |                                               |        |   |                          |   |        |              |  |   |            |   |  |   | 914     |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Total operating expenses                      |  |                                               | 50,701  |   |                          |   | 45,594  |              |  |   | 154,362     |   |  |   | 135,948 |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Operating income                              |  |                                               | 30,394  |   |                          |   | 24,863  |              |  |   | 60,500      |   |  |   | 68,916  |  
|Interest income                               |  |                                               | 5,801   |   |                          |   | 3,026   |              |  |   | 16,613      |   |  |   | 13,430  |  
|Interest expense                              |  |                                               | (46     | ) |                          |   | (100    | )            |  |   | (489        | ) |  |   | (495    | )
|Other income, net                             |  |                                               | 651     |   |                          |   | 17      |              |  |   | 611         |   |  |   | 2,754   |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Income before income taxes                    |  |                                               | 36,800  |   |                          |   | 27,806  |              |  |   | 77,235      |   |  |   | 84,605  |  
|Provision for income taxes                    |  |                                               | 12,126  |   |                          |   | 8,506   |              |  |   | 15,465      |   |  |   | 26,227  |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Net income                                    |  | $                                             | 24,674  |   |                          | $ | 19,300  |              |  | $ | 61,770      |   |  | $ | 58,378  |  
|                                              |  |                                               |         |   |                          |   |         |              |  |   |             |   |  |   |         |  
|Weighted average shares outstanding - basic   |  |                                               | 56,767  |   |                          |   | 55,197  |              |  |   | 56,686      |   |  |   | 54,929  |  
|Weighted average shares outstanding - diluted |  |                                               | 57,473  |   |                          |   | 56,395  |              |  |   | 57,444      |   |  |   | 56,064  |  
|Net income per share - basic                  |  | $                                             | 0.43    |   |                          | $ | 0.35    |              |  | $ | 1.09        |   |  | $ | 1.06    |  
|Net income per share - diluted                |  | $                                             | 0.43    |   |                          | $ | 0.34    |              |  | $ | 1.08        |   |  | $ | 1.04    |  

The accompanying notes to the unaudited consolidated financial statements are an integral part of these
statements.



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VARIAN SEMICONDUCTOR EQUIPMENT ASSOCIATES, INC.

UNAUDITED CONSOLIDATED STATEMENTS OF CASH FLOWS



|                                                                                                                                 |  |                          |          |   |              |   |          |  
|-------------------------------------------------------------------------------------------------------------------------------- |  | ------------------------ | -------- | - | ------------ | - | -------- | -
|                                                                                                                                 |  | Fiscal Nine Months Ended |         
|                                                                                                                                 |  | June 30, 2006            |          |   | July 1, 2005 |  
|                                                                                                                                 |  | (Amounts in thousands)   |         
|Cash flows from operating activities:                                                                                            |  |                          |          |   |              |   |          |  
|Net income                                                                                                                       |  | $                        | 61,770   |   |              | $ | 58,378   |  
|Adjustments to reconcile net income to net cash provided by operating activities:                                                |  |                          |          |   |              |   |          |  
|Depreciation and amortization                                                                                                    |  |                          | 9,801    |   |              |   | 9,513    |  
|Amortization of investment premiums                                                                                              |  |                          | 619      |   |              |   | 1,343    |  
|Deferred income taxes                                                                                                            |  |                          | (4,628   | ) |              |   | 1,115    |  
|Stock-based compensation                                                                                                         |  |                          | 14,372   |   |              |   | 3,581    |  
|Tax benefit from stock-based compensation                                                                                        |  |                          | 6,158    |   |              |   | 3,424    |  
|Excess tax benefits from stock-based compensation                                                                                |  |                          | (2,575   | ) |              |   |         |  
|Changes in assets and liabilities:                                                                                               |  |                          |          |   |              |   |          |  
|Accounts receivable                                                                                                              |  |                          | (27,175  | ) |              |   | (10,255  | )
|Inventories                                                                                                                      |  |                          | (4,744   | ) |              |   | (44,313  | )
|Other current assets                                                                                                             |  |                          | 17,479   |   |              |   | 11,752   |  
|Accounts payable                                                                                                                 |  |                          | 13,964   |   |              |   | 3,841    |  
|Accrued expenses                                                                                                                 |  |                          | (6,110   | ) |              |   | 112      |  
|Product warranty                                                                                                                 |  |                          | 1,079    |   |              |   | 887      |  
|Deferred revenue                                                                                                                 |  |                          | (963     | ) |              |   | 9,860    |  
|Other                                                                                                                            |  |                          | (746     | ) |              |   | (142     | )
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Net cash provided by operating activities                                                                                        |  |                          | 78,301   |   |              |   | 49,096   |  
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Cash flows from investing activities:                                                                                            |  |                          |          |   |              |   |          |  
|Purchase of property, plant and equipment                                                                                        |  |                          | (9,776   | ) |              |   | (10,633  | )
|Proceeds from sales and maturities of investments                                                                                |  |                          | 295,986  |   |              |   | 96,853   |  
|Purchase of investments                                                                                                          |  |                          | (315,337 | ) |              |   | (172,218 | )
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Net cash used in investing activities                                                                                            |  |                          | (29,127  | ) |              |   | (85,998  | )
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Cash flows from financing activities:                                                                                            |  |                          |          |   |              |   |          |  
|Proceeds from the issuance of common stock upon exercise of options and issuance of stock under the employee stock purchase
plan |  |                          | 26,989   |   |              |   | 11,047   |  
|Excess tax benefits from stock-based compensation                                                                                |  |                          | 2,575    |   |              |   |         |  
|Repurchase of common stock                                                                                                       |  |                          | (53,833  | ) |              |   |         |  
|Repayment of long-term debt                                                                                                      |  |                          | (316     | ) |              |   | (3,930   | )
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Net cash (used in) provided by financing activities                                                                              |  |                          | (24,585  | ) |              |   | 7,117    |  
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Effects of exchange rates on cash                                                                                                |  |                          | 502      |   |              |   | 479      |  
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Net (decrease) increase in cash and cash equivalents                                                                             |  |                          | 25,091   |   |              |   | (29,306  | )
|Cash and cash equivalents at beginning of period                                                                                 |  |                          | 193,426  |   |              |   | 218,578  |  
|                                                                                                                                 |  |                          |          |   |              |   |          |  
|Cash and cash equivalents at end of period                                                                                       |  | $                        | 218,517  |   |              | $ | 189,272  |  
|                                                                                                                                 |  |                          |          |   |              |   |          |  

The accompanying notes to the unaudited consolidated financial statements are an integral part of these
statements.



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##### Table of Contents

Note 1. Description of Business and Basis of Presentation

Varian Semiconductor Equipment Associates, Inc. (Varian
Semiconductor) designs, manufactures, markets and services semiconductor processing equipment used in the fabrication of integrated circuits to customers located both in the United States (U.S.) and in international markets. Varian
Semiconductor faces risk factors similar to all companies in the semiconductor manufacturing equipment market including, but not limited to, competition, market downturn, technological change, international operations and related foreign currency
risks and the ability to recruit and retain key employees.

These unaudited interim consolidated financial statements have been prepared pursuant to the
rules and regulations of the Securities and Exchange Commission (the SEC). Certain information and footnote disclosures normally included in financial statements prepared in accordance with accounting principles generally accepted in the
U.S. have been condensed or omitted pursuant to such rules and regulations. These unaudited interim consolidated financial statements should be read in conjunction with the financial statements and the notes thereto included in the annual report on
Form 10-K filed by Varian Semiconductor with the SEC on December 13, 2005 for the fiscal year ended September 30, 2005. In the opinion of management, the unaudited interim consolidated financial statements include all adjustments,
consisting of only normal recurring adjustments, necessary to present fairly the information required to be set forth therein. The results of operations for the three and nine month periods ended June 30, 2006 are not necessarily indicative of
the results to be expected for a full year or for any other period.

Reclassifications

Certain items in the prior years consolidated financial statements have been reclassified to conform to the current presentation of the financial statements.

Note 2. Stock-Based Compensation

Effective October 1, 2005,
Varian Semiconductor adopted on a modified prospective basis the provisions of the Financial Accounting Standards Boards (FASB) Statement of Financial Accounting Standard (SFAS) No. 123(R), Share-Based
Payment (Revised 2004), (SFAS No. 123(R)) and related guidance, which requires the measurement and recognition of compensation expense for all share-based payment awards made to employees and directors including employee stock
options, restricted stock awards and employee stock purchases related to Varian Semiconductors Employee Stock Purchase Plan (ESPP) based on estimated fair values. Accordingly, stock-based compensation cost is measured at grant
date, based on the fair value of the award, and is recognized as expense on a straight-line basis over the employees requisite service period.

Impact of the adoption of SFAS No. 123(R)

Varian Semiconductor adopted SFAS No. 123(R) using the modified prospective transition
method, which requires the application of the accounting standard as of October 1, 2005, the first day of Varian Semiconductors fiscal year 2006. Under this transition method, stock-based compensation expense recognized during the quarter
ended June 30, 2006 includes: (a) ESPP awards with the offering period commencing on July 1, 2005, based on the grant-date fair value estimated in accordance with the original provisions of SFAS No. 123, (b) stock options
and restricted stock awards granted prior to, but not yet vested as of September 30, 2005, based on the grant-date fair value estimated in accordance with the original provisions of SFAS No. 123, and (c) stock options and restricted
stock awards granted, subsequent to September 30, 2005, based on the grant-date fair value, in accordance with the provisions of SFAS No. 123(R). Under the modified prospective transition method, results for prior periods are not restated.



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The estimated fair value of Varian Semiconductors stock-based awards, less expected forfeitures, is amortized over
the awards vesting period on a straight-line basis. The effect of recording stock-based compensation for the three and nine month periods ended June 30, 2006 was as follows:



|                                                           |  |                                                 |        |   |                                       |   |        |  
|---------------------------------------------------------- |  | ----------------------------------------------- | ------ | - | ------------------------------------- | - | ------ | -
|                                                           |  | Fiscal Three Months Ended June 30,
2006         |        |   | Fiscal Nine Months EndedJune 30, 2006 |  
|                                                           |  | (Amounts in thousands except per share amounts) |       
|Stock-based compensation expense by type of award:         |  |                                                 |        |   |                                       |   |        |  
|Stock options                                              |  | $                                               | 2,617  |   |                                       | $ | 9,114  |  
|Restricted stock                                           |  |                                                 | 1,623  |   |                                       |   | 4,632  |  
|Employee Stock Purchase Plan                               |  |                                                 | 244    |   |                                       |   | 715    |  
|Less: Amounts capitalized as inventory                     |  |                                                 |       |   |                                       |   | (88    | )
|                                                           |  |                                                 |        |   |                                       |   |        |  
|Total stock-based compensation                             |  |                                                 | 4,484  |   |                                       |   | 14,373 |  
|Less: Tax effect on stock-based compensation               |  |                                                 | (1,467 | ) |                                       |   | (4,484 | )
|                                                           |  |                                                 |        |   |                                       |   |        |  
|Net effect on income                                       |  | $                                               | 3,017  |   |                                       | $ | 9,889  |  
|                                                           |  |                                                 |        |   |                                       |   |        |  
|Effect on earnings per share                               |  |                                                 |        |   |                                       |   |        |  
|Basic                                                      |  | $                                               | 0.05   |   |                                       | $ | 0.17   |  
|Diluted                                                    |  | $                                               | 0.05   |   |                                       | $ | 0.17   |  
|                                                           |  |                                                
|Effect of stock-based compensation on income by line item: |  |                                                 |        |   |                                       |   |        |  
|Cost of product revenue                                    |  | $                                               | 273    |   |                                       | $ | 770    |  
|Cost of service revenue                                    |  |                                                 | 219    |   |                                       |   | 734    |  
|Research and development expense                           |  |                                                 | 817    |   |                                       |   | 2,804  |  
|Marketing, general and administrative expense              |  |                                                 | 3,175  |   |                                       |   | 10,065 |  
|Provision for income taxes                                 |  |                                                 | (1,467 | ) |                                       |   | (4,484 | )
|                                                           |  |                                                 |        |   |                                       |   |        |  
|Total cost related to stock-based compensation             |  | $                                               | 3,017  |   |                                       | $ | 9,889  |  
|                                                           |  |                                                 |        |   |                                       |   |        |  

Varian Semiconductor estimates the fair value of stock options using the Black-Scholes valuation model. Key input
assumptions used to estimate the fair value of stock options include the exercise price of the award, the expected option term, the risk-free interest rate over the options expected term, the expected annual dividend yield and the expected
stock price volatility. Varian Semiconductor has determined that a blended volatility, using historical and a peer group implied volatilities, best reflects expected volatility over the expected term of the option. Varian Semiconductor believes that
the valuation technique and the approach utilized to develop the underlying assumptions are appropriate in calculating the fair values of Varian Semiconductors stock options granted in the nine months ended June 30, 2006. Estimates of
fair value are not intended to predict actual future events or the value ultimately realized by persons who receive equity awards.

The fair value of each
option grant was estimated on the grant date using the Black-Scholes option-pricing model with the following assumptions:



|                                       |  |                                       |       |   |      |   |      |  
|-------------------------------------- |  | ------------------------------------- | ----- | - | ---- | - | ---- | -
|                                       |  | Fiscal Nine Months EndedJune 30, 2006 |      
|                                       |  | Options                               |       |   | ESPP |  
|Expected life (in years)               |  |                                       | 4.2   |   |      |   | 0.5  |  
|Expected volatility                    |  |                                       | 38.9  | % |      |   | 36.1 | %
|Risk-free interest rate                |  |                                       | 4.8   | % |      |   | 4.4  | %
|Expected dividend yield                |  |                                       | 0.0   | % |      |   | 0.0  | %
|                                       |  |                                      
|Weighted-average grant date fair value |  | $                                     | 11.71 |   |      | $ | 7.88 |  



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##### Table of Contents

Prior to the adoption of SFAS No. 123(R)

Prior to October 1, 2005, Varian Semiconductor accounted for its stock plans under the provisions of Accounting Principles Board Opinion No. 25, Accounting for Stock Issued to Employees,
(APB No. 25) and FASB Interpretation No. 44, Accounting for Certain Transactions Involving Stock Compensation - an Interpretation of APB Opinion No. 25 and provided the required pro forma disclosures of SFAS
No. 123, Accounting for Stock-Based Compensation as amended by SFAS No. 148, Accounting for Stock-Based Compensation - Transition and Disclosure.

The pro-forma information for the three and nine month periods ended July 1, 2005 was as follows:



|                                                                                                                                    |  |                                                  |        |   |                                      |   |         |  
|----------------------------------------------------------------------------------------------------------------------------------- |  | ------------------------------------------------ | ------ | - | ------------------------------------ | - | ------- | -
|                                                                                                                                    |  | Fiscal Three Months EndedJuly 1, 2005            |        |   | Fiscal Nine Months EndedJuly 1, 2005 |  
|                                                                                                                                    |  | (Amounts in thousands, except per share amounts) |       
|Net income as reported                                                                                                              |  | $                                                | 19,300 |   |                                      | $ | 58,378  |  
|Add: Compensation expense included in net income, net of related tax benefit                                                        |  |                                                  | 477    |   |                                      |   | 2,487   |  
|Less: Total stock-based employee compensation expense determined under fair value method for all awards, net of related tax
benefit |  |                                                  | (2,416 | ) |                                      |   | (10,268 | )
|                                                                                                                                    |  |                                                  |        |   |                                      |   |         |  
|Pro forma net income                                                                                                                |  | $                                                | 17,361 |   |                                      | $ | 50,597  |  
|                                                                                                                                    |  |                                                  |        |   |                                      |   |         |  
|Net income per share:                                                                                                               |  |                                                  |        |   |                                      |   |         |  
|Basic, pro forma                                                                                                                    |  | $                                                | 0.31   |   |                                      | $ | 0.92    |  
|Basic, as reported                                                                                                                  |  | $                                                | 0.35   |   |                                      | $ | 1.06    |  
|                                                                                                                                    |  |                                                 
|Diluted, pro forma                                                                                                                  |  | $                                                | 0.31   |   |                                      | $ | 0.90    |  
|Diluted, as reported                                                                                                                |  | $                                                | 0.34   |   |                                      | $ | 1.04    |  
|                                                                                                                                    |  |                                                 
|Effect of stock-based compensation on income by line item:                                                                          |  |                                                  |        |   |                                      |   |         |  
|Cost of product revenue                                                                                                             |  | $                                                | 3      |   |                                      | $ | 3       |  
|Cost of service revenue                                                                                                             |  |                                                  |       |   |                                      |   |        |  
|Research and development expense                                                                                                    |  |                                                  | 455    |   |                                      |   | 455     |  
|Marketing, general and administrative expense                                                                                       |  |                                                  | 234    |   |                                      |   | 3,148   |  
|Provision for income taxes                                                                                                          |  |                                                  | (215   | ) |                                      |   | (1,119  | )
|                                                                                                                                    |  |                                                  |        |   |                                      |   |         |  
|Total cost related to stock-based compensation                                                                                      |  | $                                                | 477    |   |                                      | $ | 2,487   |  
|                                                                                                                                    |  |                                                  |        |   |                                      |   |         |  

The $10.3 million in pro-forma stock-based compensation for the nine month period ended July 1, 2005 included
$2.1 million resulting from the amendment to the definition of retirement in the Omnibus Stock Plan by Varian Semiconductors Board of Directors on October 5, 2004 and the Retirement Agreement entered into on December 8, 2004 (see
Note 11. Retirement Plans).

The fair value of Varian Semiconductors stock-based awards granted during the three and nine month periods ended
July 1, 2005 was estimated using the following weighted-average assumptions:



|                         |  |                                        |   |  |                                      |   |  |         |   |  |      |  
|------------------------ |  | -------------------------------------- | - |  | ------------------------------------ | - |  | ------- | - |  | ---- | -
|                         |  | Fiscal Three Months Ended July 1, 2005 |   |  | Fiscal Nine Months EndedJuly 1, 2005 |  
|                         |  | Options                                |   |  | ESPP                                 |   |  | Options |   |  | ESPP |  
|Expected life (in years) |  | 4.0                                    |   |  | 0.5                                  |   |  | 4.0     |   |  | 0.5  |  
|Expected volatility      |  | 50.0                                   | % |  | 40.7                                 | % |  | 56.2    | % |  | 40.7 | %
|Risk-free interest rate  |  | 3.8                                    | % |  | 2.6                                  | % |  | 3.8     | % |  | 2.6  | %
|Expected dividend yield  |  | 0.0                                    | % |  | 0.0                                  | % |  | 0.0     | % |  | 0.0  | %



6



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##### Table of Contents

Stock Incentive Plan

The 2006 Stock Incentive Plan (the Plan), which replaced the Amended and Restated Omnibus Stock Plan upon shareholder approval on February 9, 2006, provides for the grant of non-qualified share-based awards to eligible
employees, consultants and non-employee directors of Varian Semiconductor. As of June 30, 2006, there were a total of 7,739,103 shares reserved for future issuance under the Plan.

Stock Options

Sharebased awards granted under the Plan vest over a period determined by the
Compensation Committee of the Board of Directors. Options granted prior to November 8, 2002 have a life no longer than ten years after the date of grant. Options granted on or after November 8, 2002 have a life no longer than seven years
after the date of the grant. Options granted before October 15, 2004 generally vested as to 33% one year from the grant date, and the remaining 67% vest in eight equal quarterly installments so that all options are vested at the end of three
years. Options granted after October 15, 2004 generally vest as to 25% one year from date of grant, and the remaining 75% vest in twelve equal quarterly installments so that all options are vested at the end of four years.

The fair value of the Varian Semiconductors stock options issued prior to the adoption of SFAS No. 123(R) was estimated using a Black-Scholes option valuation
model. This model requires the input of subjective assumptions, including expected stock price volatility and the estimated life of each award. The fair value of these stock options was estimated assuming no expected dividends and estimates of
expected life, volatility and risk-free interest rate at the time of grant. Prior to the adoption of SFAS No. 123(R), Varian Semiconductor used historical volatility as a basis for calculating expected volatility.

The following table summarizes the stock option activity as of and for the nine month period ended June 30, 2006:



|                                  |  |            |   |  |                               |       |                                          |     |                         |   |       
|--------------------------------- |  | ---------- | - |  | ----------------------------- | ----- | ---------------------------------------- | --- | ----------------------- | - | ------
|                                  |  | Shares     |   |  | Weighted-AverageExercisePrice |       | Weighted-AverageRemainingContractualTerm |     | AggregateIntrinsicValue
|                                  |  |            |   |  |                               |       | (In years)                               |     | (In thousands)         
|Outstanding at September 30, 2005 |  | 6,625,004  |   |  | $                             | 22.14 |                                          |     |                         |   |       
|Granted                           |  | 14,050     |   |  |                               | 30.78 |                                          |     |                         |   |       
|Exercised                         |  | (1,274,620 | ) |  |                               | 18.94 |                                          |     |                         |   |       
|Forfeited/expired/cancelled       |  | (86,773    | ) |  |                               | 28.49 |                                          |     |                         |   |       
|                                  |  |            |   |  |                               |       |                                          |     |                         |   |       
|Outstanding at June 30, 2006      |  | 5,277,661  |   |  |                               | 22.83 |                                          | 5.0 |                         | $ | 53,283
|                                  |  |            |   |  |                               |       |                                          |     |                         |   |       
|Exercisable at June 30, 2006      |  | 3,688,024  |   |  | $                             | 22.57 |                                          | 4.6 |                         | $ | 38,665

As of June 30, 2006, the unrecognized compensation cost related to unvested stock options was $16.5 million.
This unrecognized balance will be recognized over an estimated weighted average amortization period of 2.1 years.

The total intrinsic value of options
exercised during the three and nine month periods ended June 30, 2006 was $1.1 million and $16.8 million, respectively, with intrinsic value defined as the difference between the market price on the date of exercise and the grant date price.



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##### Table of Contents

The following table summarizes significant ranges of outstanding and exercisable options as of June 30, 2006:



|                         |  |                     |  |                                         |  |                              |       |                         |   |                             |  |                              |  |                         |       |  |   |           
|------------------------ |  | ------------------- |  | --------------------------------------- |  | ---------------------------- | ----- | ----------------------- | - | --------------------------- |  | ---------------------------- |  | ----------------------- | ----- |  | - | ----------
|                         |  | Options Outstanding |  | Options Exercisable                    
|Range of Exercise Prices |  | NumberOutstanding   |  | WeightedAverageRemainingContractualLife |  | WeightedAverageExercisePrice |       | AggregateIntrinsicValue |   | NumberVested andExercisable |  | WeightedAverageExercisePrice |  | AggregateIntrinsicValue
|                         |  |                     |  | (In years)                              |  |                              |       |                         |   |                             |  |                              |  |                        
|$6.57 - $17.45           |  | 1,273,581           |  | 4.0                                     |  | $                            | 14.60 |                         | $ | 22,937,703                  |  | 1,186,096                    |  | $                       | 14.39 |  | $ | 21,611,381
|$18.13 - $23.16          |  | 1,071,107           |  | 4.9                                     |  | $                            | 21.07 |                         | $ | 12,362,503                  |  | 741,542                      |  | $                       | 20.60 |  | $ | 8,907,106 
|$23.46 - $23.54          |  | 1,270,947           |  | 6.1                                     |  | $                            | 23.51 |                         | $ | 11,562,059                  |  | 447,145                      |  | $                       | 23.50 |  | $ | 4,071,479 
|$23.57 - $32.61          |  | 1,088,968           |  | 5.5                                     |  | $                            | 26.71 |                         | $ | 6,420,991                   |  | 740,183                      |  | $                       | 27.10 |  | $ | 4,075,374 
|$32.62 - $46.00          |  | 573,058             |  | 3.7                                     |  | $                            | 35.49 |                         | $ |                            |  | 573,058                      |  | $                       | 35.49 |  | $ |          
|                         |  |                     |  |                                         |  |                              |       |                         |   |                             |  |                              |  |                         |       |  |   |           
|                         |  | 5,277,661           |  | 5.0                                     |  | $                            | 22.83 |                         | $ | 53,283,256                  |  | 3,688,024                    |  | $                       | 22.57 |  | $ | 38,665,340
|                         |  |                     |  |                                         |  |                              |       |                         |   |                             |  |                              |  |                         |       |  |   |           

The aggregate intrinsic value in the preceding table represents the total intrinsic value, based on Varian
Semiconductors closing stock price of $32.61 as of June 30, 2006, that would have been received by the option holders had all option holders exercised their options as of that date. The total number of in-the-money options exercisable as
of June 30, 2006 was 3.1 million.

Restricted Stock and Restricted Stock Units

Varian Semiconductor issues restricted common stock at $0.01 per share and generally 25% vests one year from the date of grant and the remaining 75% vests in twelve equal
quarterly installments. Restricted stock units awarded to Directors vest upon grant. Stock compensation expense associated with restricted common stock and restricted stock units is charged for the difference between the market value on the date of
grant and the issuance price, less estimated forfeitures, and is amortized over the awards vesting period on a straight-line basis.

During the
fiscal quarter ended June 30, 2006, Varian Semiconductor awarded a total of 10,284 restricted stock units which vested upon grant.

The following
table summarizes the restricted common stock activity as of and for the nine month period ended June 30, 2006:



|                                |  |          |   |  |                                       |      
|------------------------------- |  | -------- | - |  | ------------------------------------- | -----
|                                |  | Shares   |   |  | Weighted-AverageGrant Date Fair Value
|Nonvested at September 30, 2005 |  | 386,773  |   |  | $                                     | 26.31
|Granted                         |  | 409,205  |   |  |                                       | 31.34
|Vested                          |  | (105,254 | ) |  |                                       | 25.89
|Forfeited/expired/cancelled     |  | (5,236   | ) |  |                                       | 29.09
|                                |  |          |   |  |                                       |      
|Nonvested at June 30, 2006      |  | 685,488  |   |  |                                       | 29.36
|                                |  |          |   |  |                                       |      

As of September 30, 2005, Varian Semiconductor had unrecognized compensation cost related to unvested
restricted stock of $9.4 million before estimated forfeitures. SFAS No. 123(R) requires forfeitures to be estimated at the time of grant and revised in subsequent periods if actual forfeitures differ from those estimates. Varian Semiconductor
applied the estimated forfeiture rate to the previously recorded stock compensation expense on unvested restricted stock and determined that the cumulative effect of a change in accounting principle was immaterial.

As of June 30, 2006, the unrecognized compensation cost related to unvested restricted stock was $17.7 million before estimated forfeitures. This unrecognized
balance will be recognized over an estimated weighted average amortization period of 3.4 years.



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##### Table of Contents

Employee Stock Purchase Plan

Employees of Varian Semiconductor who elect to participate in the ESPP are able to purchase common stock at the lower of 85% of the fair market value of Varian Semiconductors common stock on the first or last day of the applicable
offering period. Typically, each offering period lasts six months. As of June 30, 2006, there were a total of 796,819 shares of common stock reserved for issuance under the ESPP.

Note 3. Computation of Net Income Per Share

Basic net income per share is calculated based on net income and the
weighted average number of shares of common stock outstanding during the reporting period. Diluted net income per share includes additional dilution from stock issuable pursuant to the exercise of stock options outstanding and unvested restricted
stock. Options to purchase common shares with exercise prices that exceeded the market value of the underlying common stock are excluded from the computation of diluted earnings per share. For purposes of the diluted net income per share
calculation, the additional shares issuable upon exercise of stock options are determined using the treasury stock method which, as required by SFAS 123(R), includes as assumed proceeds share-based compensation expense and the tax effect of such
compensation.

A reconciliation of the numerator and denominator used in the net income per share calculations is presented as follows:



|                                             |  |                                               |        |                          |   |              |  |             |        |  |   |       
|-------------------------------------------- |  | --------------------------------------------- | ------ | ------------------------ | - | ------------ |  | ----------- | ------ |  | - | ------
|                                             |  | Fiscal Three Months Ended                     |        | Fiscal Nine Months Ended
|                                             |  | June 30,2006                                  |        | July 1,2005              |   | June 30,2006 |  | July 1,2005
|                                             |  | (Amounts in thousands, except per share data)
|Numerator:                                   |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Net income                                   |  | $                                             | 24,674 |                          | $ | 19,300       |  | $           | 61,770 |  | $ | 58,378
|                                             |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Denominator:                                 |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Denominator for basic net income per share:  |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Weighted average shares outstanding          |  |                                               | 56,767 |                          |   | 55,197       |  |             | 56,686 |  |   | 54,929
|Effect of dilutive securities:               |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Stock options and restricted stock           |  |                                               | 706    |                          |   | 1,199        |  |             | 758    |  |   | 1,135 
|                                             |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Denominator for diluted net income per share |  |                                               | 57,473 |                          |   | 56,396       |  |             | 57,444 |  |   | 56,064
|                                             |  |                                               |        |                          |   |              |  |             |        |  |   |       
|Net income per share - basic                 |  | $                                             | 0.43   |                          | $ | 0.35         |  | $           | 1.09   |  | $ | 1.06  
|Net income per share - diluted               |  | $                                             | 0.43   |                          | $ | 0.34         |  | $           | 1.08   |  | $ | 1.04  

For the three and nine month periods ended June 30, 2006 and July 1, 2005, 1.6 million and
2.5 million potentially dilutive shares and 1.3 million and 1.3 million potentially dilutive shares, respectively, were excluded from the computation of diluted earnings per share.

Note 4. Cash, Cash Equivalents and Investments

Varian Semiconductor
considers currency on hand, demand deposits, and all highly liquid investments with a remaining maturity of three months or less at the date of purchase to be cash and cash equivalents. The carrying amounts of cash and cash equivalents approximate
estimated fair value because of the short-term maturities of those financial instruments. Cash equivalents at June 30, 2006 and September 30, 2005 were $200.4 million and $182.1 million, respectively.

Investments consist primarily of certificates of deposit and corporate bonds with ratings AA or better. All investments have been classified as available-for-sale and
are carried at fair market value due to the short period of time to maturity and the relative risk of the investments. As of September 30, 2005, Varian Semiconductor had the intent and ability to liquidate any of its investments in order to
meet its liquidity needs. Accordingly, those investments with contractual maturities greater than one year from the date of acquisition were classified as short-term. As of June 30, 2006, Varian Semiconductor had the ability but no longer the
intent to liquidate any of its investments in order to meet its liquidity needs for the next 12 months. Accordingly, those investments with contractual maturities greater than one year from the date of acquisition have been classified as long-term.



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##### Table of Contents

As of June 30, 2006, a net unrealized loss on investments of $2.9 million was recorded as accumulated other
comprehensive loss. As of September 30, 2005, a net unrealized loss on investments of $1.9 million was recorded as accumulated other comprehensive loss.

Varian Semiconductor has determined that the unrealized losses at June 30, 2006, as aggregated by security type in the table below, are temporary. This assessment is based upon the nature of the investments and the causes of the
unrealized losses. The investments are in corporate and US Treasury and agency bonds, as stated in the investment policy. The unrealized losses relate to the decline in fair values due to differences between the securities interest rates at
acquisition and current interest rates.



|                                    |  |                                          |         |                       |                                        |        |                     |       |                       |        |  |                     |        |                       |  |   |         |  |   |        |  
|----------------------------------- |  | ---------------------------------------- | ------- | --------------------- | -------------------------------------- | ------ | ------------------- | ----- | --------------------- | ------ |  | ------------------- | ------ | --------------------- |  | - | ------- |  | - | ------ | -
|                                    |  | In Loss Position for Less than 12 Months |         |                       | In Loss Position for 12 Months or More |        |                     | Total |                      
|                                    |  | EstimatedFair Value                      |         | GrossUnrealizedLosses |                                        |        | EstimatedFair Value |       | GrossUnrealizedLosses |        |  | EstimatedFair Value |        | GrossUnrealizedLosses | 
|                                    |  | (Amounts in thousands)                   |        
|U.S. Treasury and agency securities |  | $                                        | 53,748  |                       | $                                      | (543   | )                   |       | $                     | 61,576 |  | $                   | (1,151 | )                     |  | $ | 115,324 |  | $ | (1,694 | )
|Corporate bonds                     |  |                                          | 107,330 |                       |                                        | (807   | )                   |       |                       | 28,543 |  |                     | (621   | )                     |  |   | 135,873 |  |   | (1,428 | )
|                                    |  |                                          |         |                       |                                        |        |                     |       |                       |        |  |                     |        |                       |  |   |         |  |   |        |  
|                                    |  | $                                        | 161,078 |                       | $                                      | (1,350 | )                   |       | $                     | 90,119 |  | $                   | (1,772 | )                     |  | $ | 251,197 |  | $ | (3,122 | )
|                                    |  |                                          |         |                       |                                        |        |                     |       |                       |        |  |                     |        |                       |  |   |         |  |   |        |  

Investments by security type at June 30, 2006 were as follows:



|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        
|----------------------------------- |  | ---------------------- | ------- | -------------------- | - | --------------------- |  | - | ------------------- | - |  | - | -------
|                                    |  | Cost                   |         | GrossUnrealizedGains |   | GrossUnrealizedLosses |  |   | EstimatedFair Value
|                                    |  | (Amounts in thousands)
|Bank certificates of deposit        |  | $                      | 24,050  |                      | $ |                      |  | $ |                    |   |  | $ | 24,050 
|U.S. Treasury and agency securities |  |                        | 118,483 |                      |   | 106                   |  |   | (1,694              | ) |  |   | 116,895
|Municipal bonds                     |  |                        | 4,700   |                      |   |                      |  |   |                    |   |  |   | 4,700  
|Corporate bonds                     |  |                        | 154,722 |                      |   | 101                   |  |   | (1,428              | ) |  |   | 153,395
|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        
|                                    |  | $                      | 301,955 |                      | $ | 207                   |  | $ | (3,122              | ) |  | $ | 299,040
|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        

Investments by security type at September 30, 2005 were as follows:



|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        
|----------------------------------- |  | ---------------------- | ------- | -------------------- | - | --------------------- |  | - | ------------------- | - |  | - | -------
|                                    |  | Cost                   |         | GrossUnrealizedGains |   | GrossUnrealizedLosses |  |   | EstimatedFair Value
|                                    |  | (Amounts in thousands)
|Bank certificates of deposit        |  | $                      | 24,343  |                      | $ |                      |  | $ |                    |   |  | $ | 24,343 
|U.S. Treasury and agency securities |  |                        | 132,174 |                      |   | 1,651                 |  |   | (2,963              | ) |  |   | 130,862
|Corporate bonds                     |  |                        | 126,056 |                      |   | 127                   |  |   | (742                | ) |  |   | 125,441
|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        
|                                    |  | $                      | 282,573 |                      | $ | 1,778                 |  | $ | (3,705              | ) |  | $ | 280,646
|                                    |  |                        |         |                      |   |                       |  |   |                     |   |  |   |        

The investment maturities are as follows:



|                                    |  |                        |         |                   |   |        
|----------------------------------- |  | ---------------------- | ------- | ----------------- | - | -------
|                                    |  | June 30,2006           |         | September 30,2005
|                                    |  | (Amounts in thousands)
|Maturing within 1 year              |  | $                      | 167,176 |                   | $ | 163,228
|Maturing between 1 year and 5 years |  |                        | 131,864 |                   |   | 117,418
|                                    |  |                        |         |                   |   |        
|Total                               |  | $                      | 299,040 |                   | $ | 280,646
|                                    |  |                        |         |                   |   |        



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##### Table of Contents

Note 5. Accounts Receivable

Accounts receivable consist of the following:



|                                |  |                        |         |   |                   |   |         |  
|------------------------------- |  | ---------------------- | ------- | - | ----------------- | - | ------- | -
|                                |  | June 30,2006           |         |   | September 30,2005 |  
|                                |  | (Amounts in thousands) |        
|Billed receivables              |  | $                      | 152,464 |   |                   | $ | 124,504 |  
|Allowance for doubtful accounts |  |                        | (908    | ) |                   |   | (892    | )
|                                |  |                        |         |   |                   |   |         |  
|Accounts receivable, net        |  | $                      | 151,556 |   |                   | $ | 123,612 |  
|                                |  |                        |         |   |                   |   |         |  

Substantially all of Varian Semiconductors accounts receivable balance relates to trade receivables. Trade
accounts receivable are recorded at the invoiced amounts and do not bear interest.

Note 6. Inventories

The components of inventories are as follows:



|                        |  |                        |         |                   |   |        
|----------------------- |  | ---------------------- | ------- | ----------------- | - | -------
|                        |  | June 30,2006           |         | September 30,2005
|                        |  | (Amounts in thousands)
|Raw materials and parts |  | $                      | 60,419  |                   | $ | 55,789 
|Work in process         |  |                        | 38,802  |                   |   | 21,102 
|Finished goods          |  |                        | 30,673  |                   |   | 50,483 
|                        |  |                        |         |                   |   |        
|Total inventories       |  | $                      | 129,894 |                   | $ | 127,374
|                        |  |                        |         |                   |   |        

Note 7. Accrued Expenses

The components of accrued expenses are as follows:



|                               |  |                        |        |                   |   |       
|------------------------------ |  | ---------------------- | ------ | ----------------- | - | ------
|                               |  | June 30,2006           |        | September 30,2005
|                               |  | (Amounts in thousands)
|Income taxes payable           |  | $                      | 13,641 |                   | $ | 19,300
|Accrued incentive compensation |  |                        | 9,444  |                   |   | 12,519
|Accrued employee benefits      |  |                        | 9,605  |                   |   | 8,975 
|Accrued payroll                |  |                        | 6,484  |                   |   | 4,323 
|Accrued retirement benefits    |  |                        | 6,669  |                   |   | 5,890 
|Estimated loss contingencies   |  |                        | 3,491  |                   |   | 2,899 
|Restructuring                  |  |                        |       |                   |   | 208   
|Other                          |  |                        | 6,748  |                   |   | 5,166 
|                               |  |                        |        |                   |   |       
|Total accrued expenses         |  | $                      | 56,082 |                   | $ | 59,280
|                               |  |                        |        |                   |   |       

Note 8. Product Warranties

Varian Semiconductor warrants that its products will be free from defects in materials and workmanship and will conform to its standard published specifications in effect at the time of delivery for a period of three
to twenty-four months from the date the customer accepts the products. Additionally, Varian Semiconductor warrants that maintenance services will be performed in a workmanlike manner consistent with generally accepted industry standards for a period
of 90 days from the completion of any agreed-upon services. Varian Semiconductor provides for the estimated cost of product warranties, the amount of which is based primarily upon historical information, at the time product revenue is recognized.
Varian Semiconductors warranty obligation is affected by a number of factors, including product failure rates, utilization levels, material usage, service delivery costs incurred in correcting a product failure, and supplier warranties on
parts delivered to Varian Semiconductor. Should these factors or other factors affecting warranty costs differ from Varian Semiconductors estimates, revisions to the estimated warranty liability would be required.



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Product warranty activity for the third quarter and nine month period of fiscal years 2006 and 2005 was as follows:



|                                                 |  |                           |        |   |                          |   |        |              |  |   |             |   |  |   |        |  
|------------------------------------------------ |  | ------------------------- | ------ | - | ------------------------ | - | ------ | ------------ |  | - | ----------- | - |  | - | ------ | -
|                                                 |  | Fiscal Three Months Ended |        |   | Fiscal Nine Months Ended |  
|                                                 |  | June 30,2006              |        |   | July 1,2005              |   |        | June 30,2006 |  |   | July 1,2005 |  
|                                                 |  | (Amounts in thousands)    |       
|Beginning product warranty balance               |  | $                         | 8,926  |   |                          | $ | 8,239  |              |  | $ | 8,585       |   |  | $ | 7,841  |  
|Accruals for warranties issued during the period |  |                           | 3,071  |   |                          |   | 3,211  |              |  |   | 9,366       |   |  |   | 7,596  |  
|Increase to pre-existing warranties              |  |                           | 192    |   |                          |   | 28     |              |  |   | 217         |   |  |   | 921    |  
|Fulfillments during the period                   |  |                           | (2,518 | ) |                          |   | (2,756 | )            |  |   | (8,497      | ) |  |   | (7,636 | )
|                                                 |  |                           |        |   |                          |   |        |              |  |   |             |   |  |   |        |  
|Ending product warranty balance                  |  | $                         | 9,671  |   |                          | $ | 8,722  |              |  | $ | 9,671       |   |  | $ | 8,722  |  
|                                                 |  |                           |        |   |                          |   |        |              |  |   |             |   |  |   |        |  

Note 9. Deferred Revenue

The components of deferred revenue are as follows:



|                                                            |  |                        |        |                   |   |       
|----------------------------------------------------------- |  | ---------------------- | ------ | ----------------- | - | ------
|                                                            |  | June 30,      2006     |        | September 30,2005
|                                                            |  | (Amounts in thousands)
|Fully deferred systems, installation and acceptance revenue |  | $                      | 29,724 |                   | $ | 31,752
|Extended warranties                                         |  |                        | 10,916 |                   |   | 10,509
|Maintenance and service contracts                           |  |                        | 5,358  |                   |   | 8,488 
|Other deferred revenue                                      |  |                        | 5,744  |                   |   | 1,369 
|                                                            |  |                        |        |                   |   |       
|Total deferred revenue                                      |  | $                      | 51,742 |                   | $ | 52,118
|                                                            |  |                        |        |                   |   |       

Note 10. Long-Term Accrued Expenses

Long-term accrued expenses are comprised of accruals for post-employment liabilities and environmental costs not expected to be expended within the next year. The current portion is recorded within accrued expenses.

Note 11. Retirement Plans

On October 5, 2004,
Varian Semiconductors Board of Directors amended the definition of retirement for purposes of Varian Semiconductors Omnibus Stock Plan. On December 8, 2004, Varian Semiconductor entered into a Retirement Agreement and General
Release with the then-President and Chief Operating Officer of Varian Semiconductor, who retired effective as of December 31, 2004. As a result, approximately $3.5 million was expensed in the first quarter of fiscal 2005, of which $2.5 million
was a non-cash charge.

Note 12. Commitments, Contingencies and Guarantees

Varian Semiconductor is currently a defendant in a number of legal actions and could incur an uninsured liability in one or more of them. In the opinion of management, the outcome of such litigation will not have a
material adverse effect on the consolidated financial position, results of operations or cash flows of Varian Semiconductor.

Varian Semiconductor has
indemnification agreements with its officers and directors and certain of its customers. The maximum potential amount of future payments Varian Semiconductor could be required to make under these indemnification agreements is unlimited. Management
believes the estimated fair value of these agreements is minimal. Accordingly, Varian Semiconductor has not recorded any liabilities for these agreements as of June 30, 2006.

Varian Semiconductor enters into purchase order commitments in the normal course of business. As of June 30, 2006, Varian Semiconductor has approximately $69.1 million of purchase order commitments with various
vendors.



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Environmental Remediation

Pursuant to the agreements entered into when Varian Semiconductor, Varian Medical Systems, Inc. (VMS) and Varian Inc. (VI) spun off from Varian Associates, Inc. (VAI) in 1999, Varian Semiconductor, VMS
and VI indemnify each other for one-third of environmental investigation and remediation costs at certain sites, as adjusted for any insurance proceeds and tax benefits expected to be realized upon payment of these costs. These sites consist of
locations where VAI is alleged to have shipped manufacturing waste for recycling or disposal and current or former VAI facilities. For certain of these sites and facilities, various uncertainties make it difficult to assess the likelihood and scope
of further investigation or remediation activities or to estimate the future costs of such activities if undertaken. Varian Semiconductor has accrued $1.3 million in estimated environmental investigation and remediation costs for these sites and
facilities as of June 30, 2006. As to other sites and facilities, sufficient knowledge has been gained to be able to reasonably estimate the scope and costs of future environmental activities. As such, Varian Semiconductor has accrued $4.2
million, which represents future costs discounted at 7%, net of inflation, to cover Varian Semiconductors portion of these costs. This reserve is in addition to the $1.3 million previously described.

As of June 30, 2006, Varian Semiconductors environmental liability, based upon future environmental-related costs estimated by VMS, the surviving entity from
the 1999 VAI spin off, as of that date and included in current and long-term accrued expenses, totaled $5.7 million, of which $1.4 million is classified as current.

The amounts set forth in the foregoing paragraph are only estimates of anticipated future environmental-related costs, and the amounts actually spent in the years indicated may be greater or less than such estimates.
The aggregate range of cost estimates reflects various uncertainties inherent in many environmental investigation and remediation activities and the large number of sites where VMS is undertaking such investigation and remediation activities. VMS
believes that most of these cost ranges will narrow as investigation and remediation activities progress. Varian Semiconductor believes that its reserves are adequate, but as the scope of the obligations becomes more clearly defined, these reserves
may be modified and related charges against income may be made.

As part of the purchase of Varian Semiconductors facility located in Newburyport,
Massachusetts, Varian Semiconductor has indemnified the lender for any violation of any local, state and federal laws pertaining to environmental regulations, contamination or clean-up. Varian Semiconductor believes the estimated fair value of this
indemnification is minimal. Accordingly, Varian Semiconductor has not recorded any liabilities for this agreement as of June 30, 2006.

Legal
Proceedings

In the first quarter of fiscal year 2005, Varian Semiconductor settled a lawsuit against and recorded a payment from Applied Materials,
Inc. (Applied Materials) for past due royalties of $18.9 million and interest of $5.7 million.

Varian Semiconductor had maintained a provision
of $2.7 million in current liabilities to cover any residual indemnification obligations related to a separate lawsuit with Applied Materials. The statute of limitations on the indemnification obligations expired during the first quarter of fiscal
year 2005, and Varian Semiconductor believed it had no further liability with respect to the settlement. As a result, the remaining estimated loss contingency was reversed during the first quarter of fiscal year 2005, and was included as a component
of other income, net, for the first quarter of fiscal year 2005.

Varian Semiconductor has agreed to indemnify VMS and VI for any costs, liabilities or
expenses relating to Varian Semiconductors legal proceedings. Under the distribution related agreements, Varian Semiconductor has agreed to reimburse VMS for one-third of the costs, liabilities, and expenses, adjusted for any related tax
benefits recognized or realized by VMS, with respect to certain legal proceedings relating to discontinued operations of VMS. Varian Semiconductor believes the estimated fair value of the indemnification agreements is minimal, except as already
recorded on the financial statements.

Varian Semiconductors operations are subject to various foreign, federal, state and/or local laws relating to
the protection of the environment. These include laws regarding discharges into soil, water and air; and the generation, handling, storage, transportation and disposal of waste and hazardous substances. In addition, several countries are reviewing
proposed regulations that would require manufacturers to dispose of their products at the end of a products useful life. These laws would have the effect of increasing costs and potential liabilities associated with the conduct of certain
operations.



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Note 13. Restructurings

Varian Semiconductors business is cyclical and depends upon the capital expenditures of semiconductor manufacturers, which in turn depend on the current and anticipated market demand for integrated circuits and products utilizing
integrated circuits. The semiconductor industry has historically experienced periodic downturns, and in response, Varian Semiconductor has occasionally recorded restructuring charges in connection with cost reduction initiatives implemented in
response to the industry downturns. Restructuring charges typically consist of severance, benefits and outplacement services offered to terminated employees and sometimes include charges for remaining lease payments on facilities that are closed.
Prior to any restructuring announcements, the restructuring is approved by the appropriate level of management necessary to commit to the specific actions of the reduction in force.

During fiscal year 2005, Varian Semiconductor recognized approximately $0.9 million in restructuring costs. The restructuring costs related to reductions in headcount and facilities in Europe. The restructuring
reserve balance of $0.2 million as of September 30, 2005, was paid during the first quarter of fiscal year 2006.

Note 14. Derivative
Financial Instruments

Varian Semiconductor uses derivative instruments to protect its interests from fluctuations in earnings and cash flows caused by
volatility in currency exchange rates. Varian Semiconductor has a policy of hedging its balance sheet and certain foreign currency sales exposures with hedging instruments having terms of up to twelve months.

Varian Semiconductors international sales are primarily denominated in U.S. dollars. For foreign currency denominated sales, however, the volatility of the foreign
currency markets represents risk to Varian Semiconductor. Upon forecasting the exposure, Varian Semiconductor enters into hedges with forward sales contracts whose critical terms are designed to match those of the underlying exposure. These hedges
are evaluated for effectiveness at least quarterly by comparing the change in value of the forward contracts to the change in value of the underlying transaction, with the effective portion of the hedge accumulated in other comprehensive income
(OCI). Any measured ineffectiveness is included immediately in other income and expense in the consolidated statements of income. There has been no amount of ineffectiveness recognized during the three and nine month periods ended
June 30, 2006. OCI associated with hedges of sales denominated in foreign currencies is reclassified to revenue upon recognition in income of the underlying hedged exposure.

The following table summarizes OCI activity associated with hedges of foreign currency denominated sales during the third quarter and nine month period of fiscal year 2006:



|                                                   |  |                        |        |  
|-------------------------------------------------- |  | ---------------------- | ------ | -
|                                                   |  | Amount of Income       |       
|                                                   |  | (Amounts in thousands) |       
|Balance as of September 30, 2005                   |  | $                      | 1,214  |  
|Effective portion of cash flow hedging instruments |  |                        | 916    |  
|Reclassified to revenue                            |  |                        | (2,037 | )
|                                                   |  |                        |        |  
|Balance as of December 30, 2005                    |  | $                      | 93     |  
|                                                   |  |                        |        |  
|Effective portion of cash flow hedging instruments |  |                        | 390    |  
|Reclassified to revenue                            |  |                        | (210   | )
|                                                   |  |                        |        |  
|Balance as of March 31, 2006                       |  | $                      | 273    |  
|                                                   |  |                        |        |  
|Effective portion of cash flow hedging instruments |  |                        | (113   | )
|Reclassified to revenue                            |  |                        | (320   | )
|                                                   |  |                        |        |  
|Balance as of June 30, 2006                        |  | $                      | (160   | )
|                                                   |  |                        |        |  



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Note 15. Comprehensive Income

The following table reconciles net income to comprehensive income for the third quarter and nine month periods of fiscal years 2006 and 2005:



|                                                               |  |                           |        |                          |             |   |              |  |   |             |   |  |   |        |  
|-------------------------------------------------------------- |  | ------------------------- | ------ | ------------------------ | ----------- | - | ------------ |  | - | ----------- | - |  | - | ------ | -
|                                                               |  | Fiscal Three Months Ended |        | Fiscal Nine Months Ended |            
|                                                               |  | June 30,2006              |        |                          | July 1,2005 |   | June 30,2006 |  |   | July 1,2005 |  
|                                                               |  | (Amounts in thousands)    |       
|Net income                                                     |  | $                         | 24,674 |                          |             | $ | 19,300       |  | $ | 61,770      |   |  | $ | 58,378 |  
|Other comprehensive income (loss):                             |  |                           |        |                          |             |   |              |  |   |             |   |  |   |        |  
|Effective portion of cash flow hedging instruments, net of tax |  |                           | (294   | )                        |             |   | 787          |  |   | (945        | ) |  |   | 782    |  
|Unrealized loss on short-term investments, net of tax          |  |                           | (462   | )                        |             |   | 366          |  |   | (680        | ) |  |   | (858   | )
|                                                               |  |                           |        |                          |             |   |              |  |   |             |   |  |   |        |  
|Comprehensive income                                           |  | $                         | 23,918 |                          |             | $ | 20,453       |  | $ | 60,145      |   |  | $ | 58,302 |  
|                                                               |  |                           |        |                          |             |   |              |  |   |             |   |  |   |        |  

Note 16. Share Repurchase Program

In October 2004, Varian Semiconductor announced that its Board of Directors had authorized the repurchase of up to $100 million of Varian Semiconductors common stock on the open market. The first purchases under
this plan were made during the first quarter of fiscal year 2006. Varian Semiconductor plans to continue to execute authorized repurchases. Share repurchases under this authorization during the first nine months of fiscal year 2006 were as follows:



|                                                              |  |                                       |          
|------------------------------------------------------------- |  | ------------------------------------- | ---------
|                                                              |  | Fiscal Nine Months EndedJune 30, 2006
|                                                              |  | (Dollars in thousands)               
|Number of shares of common stock repurchased (split effected) |  |                                       | 1,920,188
|Total cost of repurchase                                      |  | $                                     | 53,833   

In addition to the repurchases made during the first nine months of fiscal year 2006, Varian Semiconductor
repurchased 1,203,622 shares at total cost of $33.3 million between June 30, 2006 and August 4, 2006, the latest practicable date prior to the filing date of this quarterly report on Form 10-Q.

On August 1, 2006, the Board of Directors of Varian Semiconductor amended the share repurchase program to increase the amount of funds that may be expended in
repurchasing Varian Semiconductors common stock from $100 million to $200 million.

Note 17. Operating Segments and Geographic Information

Varian Semiconductor has determined that it operates in one business segment: the manufacturing, marketing and servicing of semiconductor processing
equipment for ion implantation systems. Since Varian Semiconductor operates in one segment, all financial segment information required by SFAS No. 131, Disclosures about Segments of an Enterprise and Related Information, can be
found in the consolidated financial statements.

Varian Semiconductor expects that sales of its products to relatively few customers will continue to
account for a high percentage of its revenue in the foreseeable future. In the third quarter of fiscal year 2006, revenue from two customers accounted for 11% and 10%, respectively, of Varian Semiconductors total revenue. In the third quarter
of fiscal year 2005, revenue from two customers accounted for 32% and 12%, respectively, of Varian Semiconductors total revenue. During the first nine months of fiscal year 2006, revenue from two customers accounted for 12% and 11%,
respectively, of Varian Semiconductors total revenue. During the first nine months of fiscal year 2005, revenue from two customers accounted for 22% and 11%, respectively, of Varian Semiconductors total revenue.



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As of June 30, 2006, three customers represented 15%, 11% and 9%, respectively, of the total accounts receivable
balance. As of September 30, 2005, two customers accounted for 16% and 9% of the total accounts receivable balance.

The following table summarizes revenue based on final geographic destination and long-lived assets by geography:



|                              |  |                        |         |        |   |        |  |        |        |       |   |         |  |              |         |  |   |        |  |   |        
|----------------------------- |  | ---------------------- | ------- | ------ | - | ------ |  | ------ | ------ | ----- | - | ------- |  | ------------ | ------- |  | - | ------ |  | - | -------
|                              |  | North America          |         | Europe |   | Japan  |  | Taiwan |        | Korea |   | Other   |  | Consolidated
|                              |  | (Amounts in thousands)
|Revenue  Three months ended: |  |                        |         |        |   |        |  |        |        |       |   |         |  |              |         |  |   |        |  |   |        
|June 30, 2006                 |  | $                      | 52,175  |        | $ | 17,360 |  | $      | 11,689 |       | $ | 45,339  |  | $            | 29,768  |  | $ | 29,855 |  | $ | 186,186
|July 1, 2005                  |  |                        | 25,216  |        |   | 15,322 |  |        | 8,335  |       |   | 38,736  |  |              | 65,893  |  |   | 13,188 |  |   | 166,690
|                              |  |                        |         |        |   |        | 
|Revenue  Nine months ended:  |  |                        |         |        |   |        |  |        |        |       |   |         |  |              |         |  |   |        |  |   |        
|June 30, 2006                 |  | $                      | 127,657 |        | $ | 58,115 |  | $      | 52,508 |       | $ | 107,379 |  | $            | 110,899 |  | $ | 61,060 |  | $ | 517,618
|July 1, 2005                  |  |                        | 108,942 |        |   | 45,726 |  |        | 31,142 |       |   | 75,846  |  |              | 146,618 |  |   | 45,938 |  |   | 454,212
|                              |  |                        |         |        |   |        | 
|Long term assets, net, as of: |  |                        |         |        |   |        |  |        |        |       |   |         |  |              |         |  |   |        |  |   |        
|June 30, 2006                 |  | $                      | 186,232 |        | $ | 481    |  | $      | 8,827  |       | $ | 412     |  | $            | 11,223  |  | $ | 1,364  |  | $ | 208,539
|July 1, 2005                  |  |                        | 54,413  |        |   | 530    |  |        | 8,831  |       |   | 424     |  |              | 8,566   |  |   | 1,336  |  |   | 74,100 

The $18.9 million in non-recurring royalty revenue received from Applied Materials in the first nine months of
fiscal year 2005 is included in the North America revenue in the table above.

Note 18. Income Tax Benefit

In the normal course of business, Varian Semiconductor and its subsidiaries are examined by various tax authorities, including the U.S. Internal Revenue Service
(IRS). The IRS conducted an examination for the tax years 1999 through 2003 as part of its routine examinations of Varian Semiconductors income tax returns. The IRS completed fieldwork for this examination of Varian Semiconductor
in the fourth quarter of fiscal year 2005 and submitted its report to the Joint Committee for final approval. Varian Semiconductor was notified of Joint Committee approval in the first quarter of fiscal year 2006. In the first quarter of fiscal year
2006, Varian Semiconductor recognized an income tax benefit of $9.0 million related to the favorable conclusion of this multi-year examination. Additionally, Varian Semiconductor reduced other current assets by $11.2 million upon the receipt of an
$11.2 million refund from the IRS. Included in interest income for the first nine months of fiscal year 2006 is $1.6 million of interest income related to the final resolution of the audit.

Varian Semiconductors effective income tax rate was 32% for the first nine months of fiscal year 2006. Inclusive of the one-time income tax benefit received in the
first quarter of fiscal year 2006 and other one-time items, the actual tax rate was a provision of 20%.

Note 19. Stock Split

On February 1, 2006, the Board of Directors declared a three-for-two stock split, effected in the form of a stock dividend, payable on February 28, 2006 to
stockholders of record at the close of business on February 13, 2006. Varian Semiconductor has retained the current par value of $0.01 per share for all common shares. All references in the financial statements and notes to the number of shares
outstanding, per share amounts, stock option, restricted stock and ESPP data of Varian Semiconductors common shares have been restated to reflect the effect of the stock split for all periods presented.

Stockholders equity as of June 30, 2006 reflects the stock split by reclassifying from Capital in excess of par value to Common stock
an amount equal to the par value of the additional shares arising from the split. Stockholders equity as of September 30, 2005 reflects historical dollar values of common stock and capital in excess of par value, while the number of
shares issued and outstanding has been updated to reflect post-split shares in order to calculate per share values.

Note 20. Recent Accounting
Pronouncements

In May 2005, the FASB issued SFAS No. 154, Accounting Changes and Error Corrections. This statement replaces APB
Opinion No. 20, Accounting Changes, and SFAS No. 3, Reporting Accounting Changes in Interim Financial Statements, and changes the requirements for the accounting for and reporting of a change in accounting
principle. This statement applies to all voluntary changes in accounting principles. It also applies to changes required by an accounting pronouncement in the unusual instance that the pronouncement does not include specific transition provisions.
When a pronouncement includes



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specific transition provisions, those provisions should be followed. SFAS No. 154 requires retrospective application
to prior periods financial statements of voluntary changes in accounting principles. SFAS No. 154 is effective for accounting changes and corrections of errors made during Varian Semiconductors fiscal year 2007, beginning on
September 30, 2006. Varian Semiconductor does not believe the adoption of SFAS No. 154 will have a material impact on its financial statements.

In June 2006, the FASB ratified the consensus reached by the EITF on Issue No. 06-3, How Taxes Collected from Customers and Remitted to Governmental Authorities Should Be Presented in the Income Statement (That Is, Gross versus
Net Presentation) (EITF 06-3). EITF 06-3 states that a company should disclose its accounting policy regarding the gross or net presentation of certain taxes. If taxes included in gross revenues are significant, a company should
disclose the amount of such taxes for each period for which an income statement is presented (i.e., both interim and annual periods). Taxes within the scope of EITF 06-3 are those that are imposed on and concurrent with a specific revenue-producing
transaction, such as sales tax or value-added tax. Taxes assessed on an entitys activities over a period of time, such as gross receipts taxes, are not within the scope of the issue. EITF 06-3 will be effective for Varian Semiconductors
second quarter of fiscal year 2007. The disclosures required under this Issue, which may be presented on an aggregate basis, are effective retrospectively for all periods presented. Varian Semiconductor is in the process of evaluating whether the
adoption of EITF 06-3 will have a material impact on its financial statements.

In July 2006, the FASB issued FASB Interpretation No. 48,
Accounting for Uncertainty in Income Taxesan interpretation of FASB Statement No. 109. This interpretation clarifies the accounting for uncertainty in income taxes recognized in an enterprises financial statements in
accordance with FASB Statement No. 109, Accounting for Income Taxes. This interpretation prescribes a recognition threshold and measurement attribute for the financial statement recognition and measurement of a tax position taken or
expected to be taken in a tax return. This interpretation also provides guidance on derecognition, classification, interest and penalties, accounting in interim periods, disclosure, and transition. This interpretation will be effective for Varian
Semiconductor for its fiscal year 2008, beginning September 29, 2007. Varian Semiconductor is in the process of evaluating whether the adoption of this interpretation will have a material impact on its financial statements.



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ITEM 2. MANAGEMENTS DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

This Form 10-Q
contains certain forward-looking statements. For purposes of the safe harbor provisions under The Private Securities Litigation Reform Act of 1995, any statements using the terms believes, anticipates, expects,
plans or similar expressions are forward-looking statements. The forward-looking statements involve risks and uncertainties that could cause actual results to differ materially from those projected. There are a number of important
factors that could cause Varian Semiconductor Equipment Associates, Inc. (Varian Semiconductor)s actual results to differ materially from those indicated by forward-looking statements made in this report and presented by management
from time to time. Some of the important risks and uncertainties that may cause Varian Semiconductors financial results to differ are described under the heading Risk Factors in this report and in the annual report on Form 10-K for
the fiscal year ended September 30, 2005, filed with the Securities and Exchange Commission (SEC) on December 13, 2005.

The
following information should be read in conjunction with the unaudited interim consolidated financial statements and notes thereto included in Item 1. Consolidated Financial Statements of this quarterly report and the audited
consolidated financial statements and notes thereto and the section titled Item 7. Managements Discussion and Analysis of Financial Condition and Results of Operations in Varian Semiconductors annual report on Form 10-K for
the fiscal year ended September 30, 2005, filed with the SEC on December 13, 2005.

Overview

Varian Semiconductor is the leading supplier of ion implantation equipment used in the fabrication of semiconductor chips. Varian Semiconductor designs, manufactures,
markets and services semiconductor processing equipment for virtually all of the major semiconductor manufacturers in the world. Varian Semiconductors VIIStaTMion implanter products are designed to leverage single wafer processing technology for the full range of semiconductor implant applications. Varian Semiconductor has shipped over 3,400 systems
worldwide.

Varian Semiconductor provides support, training, and after-market products and services that help its customers obtain high utilization and
productivity, reduce operating costs, and extend capital productivity of investments through multiple product generations. In fiscal year 2006, Varian Semiconductor was ranked number one in customer satisfaction in VLSI Research Inc.s customer
survey for all large suppliers of wafer processing equipment, an honor received in nine of the past ten years.

Varian Semiconductors business is
cyclical and depends upon the capital expenditures of semiconductor manufacturers, which in turn depends on the current and anticipated market demand for integrated circuits and products utilizing integrated circuits. In fiscal years 2001 and 2002,
semiconductor equipment manufacturers experienced a significant contraction in the demand for products due to the slowdown in economies worldwide, specifically the slowdown in technology sectors that utilize integrated circuits. In fiscal year 2003,
Varian Semiconductor experienced an increase in business activity owing to a generally strengthening economy and increased demand for semiconductors. Demand for semiconductor industry products continued and Varian Semiconductors fiscal year
2004 revenue increased 46% over fiscal year 2003. For fiscal year 2005, Varian Semiconductors revenue increased 13% over fiscal year 2004, despite a slight decline in the capital expenditures of semiconductor manufacturers, as customers
migrated to single wafer systems, which favor Varian Semiconductors product offerings.

Critical Accounting Policies and Significant Judgments and
Accounting Estimates

Varian Semiconductors discussion and analysis of its financial condition and results of operations are based upon Varian
Semiconductors consolidated financial statements, which have been prepared in accordance with accounting principles generally accepted in the United States (U.S.) (GAAP). The preparation of these consolidated financial
statements requires Varian Semiconductor to make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses, and related disclosures of contingent assets and liabilities. On a continual basis, Varian
Semiconductor evaluates its estimates, including those related to inventories, accounts receivable, intangible assets, income taxes, warranty obligations, deferred revenue, post-retirement benefits, contingencies, and foreign currencies. Varian
Semiconductor operates in a highly cyclical and competitive industry that is influenced by a variety of diverse factors including, but not limited to, technological advances, product life cycles, customer and supplier lead times, and geographic and
macroeconomic trends. Estimating product demand beyond a relatively short forecasting horizon is difficult and prone to forecasting error due to the cyclical nature and inherent lack of visibility in the industry. Varian Semiconductor bases its
estimates on historical experience and on various other assumptions that are believed to be reasonable under the circumstances, the results of which form the basis for making judgments about the carrying values of assets and liabilities that are not
readily apparent from other sources. Actual results may differ from these estimates under different assumptions or conditions. See also the factors discussed in the section titled Risk Factors in Part II, Item 1A.



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Varian Semiconductor believes that the following sets forth the critical accounting policies used by Varian Semiconductor
in the preparation of its consolidated financial statements.

Revenue Recognition

Product revenue includes established products, new products, upgrades and spare parts.

Varian Semiconductor recognizes
revenue from product sales upon shipment, provided title and risk of loss has passed to the customer, evidence of an arrangement exists, fees are contractually fixed or determinable, collectibility is reasonably assured through historical collection
results and regular credit evaluations, and there are no uncertainties regarding customer acceptance.

For established and new products, a portion of the
total purchase price is typically not due until installation occurs and the customer accepts the product. For established products, the lesser of the amount allocated to the equipment or the contractual amount due upon delivery is recorded as
product revenue upon delivery. The amount deferred is recognized as revenue upon customer acceptance. For new products, revenue allocated to the equipment is recognized upon customer acceptance. Revenue related to spare parts and upgrade sales is
recognized upon the later of delivery or when the title and risk of loss passes to the customer.

Products are classified as established products if
post-delivery acceptance provisions and the installation process have been determined to be routine, due to the fact that the acceptance provisions are generally a replication of pre-shipment procedures, and there is a demonstrated history of
achieving predetermined installation cost targets. The majority of products are designed and manufactured to meet contractual customer specifications. To ensure customer specifications are satisfied, the systems are tested at Varian
Semiconductors manufacturing facility prior to shipment. To the extent that customers conditions cannot be replicated in Varian Semiconductors facilities, or if there is not a demonstrated history of meeting newer customer
specifications, then the product is treated as new for revenue recognition purposes. Varian Semiconductor has predetermined criteria for changing the classification of a new product to an established product. A new product must achieve a set number
of acceptances and a set target for installation cost. Once the criteria have been achieved for a new product, the product is considered established.

Service revenue includes revenue from maintenance and service contracts, extended warranties, paid service and system installation services. Revenue related to maintenance and service contracts is recognized ratably over the duration of the
contracts. Extended warranty revenue is deferred and recognized ratably over the applicable warranty term. Revenue related to paid service is recorded when earned and revenue related to installation is recorded upon fulfillment of the service
obligation and customer acceptance. It takes approximately three to six weeks for Varian Semiconductor technicians to complete the installation of Varian Semiconductor products and perform tests agreed to with customers. Certain customers formally
document their acceptance of Varian Semiconductors products at this time. Other customers elect to perform additional internal testing prior to formal acceptance, and this process generally takes eight to twelve weeks.

Royalty and license revenue is recognized when contractual obligations are met, and in the case of royalties, upon receipt of a royalty report from the customer,
evidence of an arrangement exists, fees are fixed or determinable and collection is reasonably assured. When fees are not fixed or determinable, revenue is recorded when payments become due.

Varian Semiconductors transactions frequently include the sale of systems and services under multiple element arrangements. Revenue under these arrangements is
allocated to all elements, except systems, based upon the fair value of those elements. The amount allocated to installation is based upon hourly rates at the estimated time to complete the service. The fair value of all other elements is based upon
the price charged when these amounts are sold separately and unaccompanied by other elements. The amount of revenue allocated to systems is done on a residual method basis. Under this method, the total value of the arrangement is allocated first to
the undelivered elements based on their fair values, with the remainder being allocated to systems revenue.

Allowance for Doubtful Accounts

Varian Semiconductor maintains allowances for doubtful accounts for estimated losses resulting from the inability to make required payments for
products and services. Accounts with known financial issues are first reviewed and specific estimates are recorded. The remaining accounts receivable balances are then grouped in categories by the number of days the balance is past



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due, and the estimated loss is calculated as a percentage of the total category based upon past history. If the financial
conditions of Varian Semiconductors customers were to deteriorate, resulting in their inability to make payments, additional allowances may be required. If accounts previously identified as a risk and reserved for subsequently stabilize, and
are deemed to no longer be at risk for collection, or categories past due decrease, the allowance for doubtful accounts may be reduced. As a result, a reduction to bad debt expense would be recognized in the period the determination was
made.

Inventory and Purchase Order Commitments

Varian
Semiconductor values its inventory at the lower of cost or market. The determination of lower of cost or market requires that Varian Semiconductor make significant assumptions about future demand for products and the transition to new product
offerings from legacy products. Estimating product demand beyond a relatively short forecasting horizon is difficult and prone to forecasting error due to the cyclical nature and inherent lack of visibility in the industry. Varian Semiconductor also
provides for losses on those open purchase order commitments in which Varian Semiconductors estimated obligation to receive inventory under the commitments exceeds expected production demand. These assumptions include, but are not limited to,
future manufacturing schedules, customer demand, supplier lead time and technological and market obsolescence. Once inventory is written down and a new cost basis has been established, it is not written back up if demand increases. If market
conditions are less favorable than those projected by management, additional inventory provisions may be required. If market conditions are more favorable than those projected by management, and specific inventory previously written down is
subsequently sold, gross profit would improve by the amount of the specific write-down reversed in the period the inventory is sold. In the case of purchase order commitments, more favorable market conditions or successful negotiations with
suppliers will result in a reduction of provisions in the period the excess purchase order commitments are reduced.

Evaluation Tools

Varian Semiconductor occasionally supplies evaluation tools to potential new customers, usually for a period of three months to one year. While the tool is at the
customers semiconductor manufacturing factory (fab), Varian Semiconductor and the customer work closely together through complex processes to qualify the tool for that particular customers requirements. These qualification
costs are included in marketing, general and administrative expenses in the period incurred. In addition, during the evaluation period, Varian Semiconductor generally reduces the carrying value of the evaluation tool ratably over a period of four
years. This cost is recorded as a component of marketing, general and administrative expenses and the carrying value of the evaluation tool is included in inventory. Customer evaluations are normally successful and upon fulfillment of all four
revenue recognition criteria, Varian Semiconductor recognizes the revenue from the evaluation tool and remaining tool cost through revenue and cost of product revenue, respectively.

Valuation Allowance on Deferred Tax Assets and Income Tax Provision

The Financial Accounting Standards Board
(FASB) Statement of Financial Accounting Standards (SFAS) No. 109, Accounting for Income Taxes, requires that deferred tax assets be reduced by a valuation allowance if it is more likely than not that a
portion of the deferred tax asset will not be realized. On a quarterly basis, Varian Semiconductor evaluates both the positive and negative evidence bearing upon the realizability of its deferred tax assets. Varian Semiconductor considers future
taxable income, ongoing prudent and feasible tax planning strategies, and the ability to utilize tax losses and credits in assessing the need for a valuation allowance. A valuation allowance related to certain state tax credit carryforwards has been
recorded. Management has concluded that it is more likely than not that these credits will not be utilized since historically the annual amount of state credits generated exceeds the amount of credits that can be used. Should Varian Semiconductor
determine that it is not able to realize all or part of its other deferred tax assets in the future, a valuation allowance would be required resulting in an expense recorded within the provision for income taxes in the statement of income in the
period in which such determination was made. It is possible that the amount of the deferred tax asset considered realizable could be reduced in the near term if future taxable income is reduced. Varian Semiconductors effective tax rate is
affected by levels of taxable income in domestic and foreign tax jurisdictions, U.S. tax credits generated and utilized for research and development expenditures, U.S. foreign income exclusion, investment tax credits and other tax incentives
specific to domestic and foreign operations. In the normal course of business, Varian Semiconductor and its subsidiaries are examined by various tax authorities, including the U.S. Internal Revenue Service (IRS). The IRS conducted an
examination for the tax years 1999 through 2003 as part of its routine examinations of Varian Semiconductors income tax returns. Fieldwork for the examination was completed in the fourth quarter of fiscal year 2005 and submitted to the
Congressional Joint Committee on Taxation (Joint Committee) for final approval. Varian Semiconductor was notified of Joint Committee approval in the first quarter of fiscal year 2006. In the first quarter of fiscal year 2006, Varian
Semiconductor recognized an income tax benefit of $9.0 million related to the favorable conclusion of this multi-year examination by the IRS. In addition, the company recorded $1.6 million of interest income related to various income tax refunds
that were released by the IRS at the conclusion of this examination.



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Product Warranties

Varian Semiconductor provides for the estimated cost of product warranties, the amount of which is based primarily upon historical information, at the time product revenue is recognized. While Varian Semiconductor
engages in extensive product quality programs and processes including actively monitoring and evaluating the quality of its component supplies, Varian Semiconductors warranty obligation is affected by product failure rates, utilization levels,
material usage, service delivery costs incurred in correcting a product failure and supplier warranties on parts delivered to Varian Semiconductor. Should actual product failure rates, utilization levels, material usage, service delivery costs
incurred in correcting a product failure or supplier warranties on parts differ from Varian Semiconductors estimates, revisions to the estimated warranty liability would be required.

Environmental Liabilities

Liabilities are recorded when environmental assessments and/or remedial efforts are probable and the costs can be reasonably estimated. Generally, the timing of these accruals coincides with completion of a feasibility study or Varian
Semiconductors commitment to a formal plan of action. In situations where the various uncertainties make it difficult to assess the likelihood and scope of further investigation or remediation activities or to estimate future costs, the lower
limit of an estimated range is accrued on a non-discounted basis. All other liabilities, where Varian Semiconductor has generally sufficient knowledge to estimate the scope of costs and future activities, are accrued on a discounted basis. Should
new information become available and/or different assumptions are applied in the estimation of environmental liabilities, revisions to the accrued environmental liability would be required.

Results of Operations

Revenue

The following table sets forth revenue by category for the three and nine month periods ended June 30, 2006 and July 1,
2005:



|                      |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|--------------------- |  | ------------------------- | ------- | ------- | ------------------------ | ------- |  | - | ------- | - |  | -------- | - | ------- | - | ------- |  | - | ------- |  | - | ------- | - |  | ----- | -
|                      |  | Fiscal Three Months Ended |         |         | Fiscal Nine Months Ended |        
|                      |  | June 30,                  |         | July 1, |                          |         |  |   | Percent |   |  | June 30, |   | July 1, |   |         |  |   | Percent | 
|                      |  | 2006                      |         | 2005    |                          | Change  |  |   | Change  |   |  | 2006     |   | 2005    |   | Change  |  |   | Change  | 
|                      |  | (Amounts in thousands)    |         |         | (Amounts in thousands)   |        
|Revenue               |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|Product               |  | $                         | 162,656 |         | $                        | 144,227 |  | $ | 18,429  |   |  | 12.8     | % |         | $ | 452,031 |  | $ | 367,359 |  | $ | 84,672  |   |  | 23.0  | %
|Service               |  |                           | 20,747  |         |                          | 19,902  |  |   | 845     |   |  | 4.2      | % |         |   | 58,801  |  |   | 60,584  |  |   | (1,783  | ) |  | -2.9  | %
|Royalty and license   |  |                           | 2,783   |         |                          | 2,561   |  |   | 222     |   |  | 8.7      | % |         |   | 6,786   |  |   | 26,269  |  |   | (19,483 | ) |  | -74.2 | %
|                      |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|Revenue               |  | $                         | 186,186 |         | $                        | 166,690 |  | $ | 19,496  |   |  | 11.7     | % |         | $ | 517,618 |  | $ | 454,212 |  | $ | 63,406  |   |  | 14.0  | %
|                      |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|Revenue by territory: |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|Asia Pacific          |  | $                         | 116,651 |         | $                        | 126,152 |  | $ | (9,501  | ) |  | -7.5     | % |         | $ | 331,846 |  | $ | 299,544 |  | $ | 32,302  |   |  | 10.8  | %
|North America*        |  |                           | 52,175  |         |                          | 25,216  |  |   | 26,959  |   |  | 106.9    | % |         |   | 127,657 |  |   | 108,942 |  |   | 18,715  |   |  | 17.2  | %
|Europe                |  |                           | 17,360  |         |                          | 15,322  |  |   | 2,038   |   |  | 13.3     | % |         |   | 58,115  |  |   | 45,726  |  |   | 12,389  |   |  | 27.1  | %
|                      |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  
|Revenue               |  | $                         | 186,186 |         | $                        | 166,690 |  | $ | 19,496  |   |  | 11.7     | % |         | $ | 517,618 |  | $ | 454,212 |  | $ | 63,406  |   |  | 14.0  | %
|                      |  |                           |         |         |                          |         |  |   |         |   |  |          |   |         |   |         |  |   |         |  |   |         |   |  |       |  

---

|* | North America revenue for the first nine months of fiscal year 2005 included $18.9 million in past due royalties from Applied Materials, Inc.
|- | ---------------------------------------------------------------------------------------------------------------------------------------------

Product

During the third quarter
and first nine months of fiscal year 2006, product revenue was $162.7 million and $452.0 million, respectively, compared to $144.2 million and $367.4 million for the same periods a year ago. The increase in product revenue was primarily due to
increased high current tool sales and increased parts sales. On a unit basis, the number of high current tools recorded in revenue increased 14% for the third quarter of fiscal year 2006 compared to the third quarter of fiscal year 2005. For the
fiscal year to date, high current units recorded in revenue have increased 62% over the same period in fiscal year 2005. Parts sales for the third quarter and fiscal year to date also increased by approximately 33% and 23%, respectively, when
compared to the same periods in fiscal year 2005. The increases in tool and parts revenues for both the quarter and the year to date were slightly offset by a decrease in upgrades revenue.



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Service

Service revenue during the third quarter and first nine months of fiscal year 2006 was $20.7 million and $58.8 million, respectively, compared to $19.9 million and $60.6 million for the same periods a year ago. The
primary reason for the decrease in year-to-date revenue is a decrease in the fair value of installation revenue, partially offset by an increase in revenue from service contracts. As products have matured and the installation requires less effort to
complete, the fair value of installation revenue per installation is reduced, which contributes to the reduction in service revenue. Generally, installation revenue is influenced by shipment volume of systems, product mix, customer mix, and timing
of customer acceptances.

Royalty and license

Royalty revenue during the third quarter and first nine months of fiscal year 2006 was $2.8 million and $6.8 million, respectively, compared to $2.6 million and $26.3 million for the same respective periods a year
ago. During the first quarter of fiscal year 2005, Varian Semiconductor received $18.9 million for past due royalties from Applied Materials, Inc. (Applied Materials) pursuant to an arbitration panel ruling. Applied Materials is also
required to make quarterly unit-based royalty payments to Varian Semiconductor on future sales of certain products found to be within the scope of the patent license agreement (the Agreement) through expiration of the Agreement in March
2007. Also in the first quarter of fiscal year 2005, Varian Semiconductor received its final quarterly cash payment of $1.25 million pursuant to the terms of a Settlement and License Agreement between Varian Semiconductor and Lam Research
Corporation.

Customers

During the third quarter of fiscal year 2006, revenue from two customers accounted for 11% and 10%, respectively, of Varian Semiconductors total revenue, compared to two customers with 32% and 12% of the revenue, respectively, during
the third quarter of fiscal year 2005. Varian Semiconductor expects that sales of its products to relatively few customers will continue to account for a high percentage of its revenue in the foreseeable future. During the first nine months of
fiscal year 2006, revenue from two customers accounted for 12% and 11% of Varian Semiconductors total revenue. During the first nine months of fiscal year 2005, revenue from two customers accounted for 22% and 11%, respectively, of Varian
Semiconductors total revenue.

Fluctuations in the timing and mix of product shipments, customer requirements for systems, and the completion of the
installation of the product will continue to have a significant impact on the timing and amount of revenue in any given reporting period (see also Risk Factors and Critical Accounting Policies - Revenue Recognition).

Shipment Mix

Varian
Semiconductors tools are used primarily for 200mm and 300mm wafer size implants. In addition, Varian Semiconductors tools are used in both major markets  memory and logic  for integrated circuits. Shipments to foundry
manufacturers are allocated based upon Varian Semiconductors estimate of usage for either memory or logic. The following table sets forth tool shipments by wafer size and market, as a percent of total tool shipments, for the third quarter and
first nine months of fiscal years 2006 and 2005. Percentages are based on the number of tools shipped during the respective period.



|              |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|------------- |  | ------------------------- | - |  | ------------------------ | - |  | ------- | - |  | -------- | - |  | ------- | - |  | ------- | -
|              |  | Fiscal Three Months Ended |   |  | Fiscal Nine Months Ended |  
|              |  | June 30,                  |   |  | July 1,                  |   |  | Percent |   |  | June 30, |   |  | July 1, |   |  | Percent |  
|              |  | 2006                      |   |  | 2005                     |   |  | Change  |   |  | 2006     |   |  | 2005    |   |  | Change  |  
|By wafer size |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|300mm         |  | 73                        | % |  | 48                       | % |  | 25      | % |  | 75       | % |  | 55      | % |  | 20      | %
|200mm         |  | 27                        | % |  | 52                       | % |  | -25     | % |  | 25       | % |  | 45      | % |  | -20     | %
|              |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|Shipments     |  | 100                       | % |  | 100                      | % |  | 0       | % |  | 100      | % |  | 100     | % |  | 0       | %
|              |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|By market     |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|Memory        |  | 59                        | % |  | 81                       | % |  | -22     | % |  | 60       | % |  | 70      | % |  | -10     | %
|Logic         |  | 41                        | % |  | 19                       | % |  | 22      | % |  | 40       | % |  | 30      | % |  | 10      | %
|              |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  
|Shipments     |  | 100                       | % |  | 100                      | % |  | 0       | % |  | 100      | % |  | 100     | % |  | 0       | %
|              |  |                           |   |  |                          |   |  |         |   |  |          |   |  |         |   |  |         |  

Wafer size and market. The migration from 200mm to 300mm began at the end of the 1990s and 300mm fabs now
represent more than half of semiconductor expansions. Most advanced devices below 130nm are produced on 300mm wafers. Varian Semiconductor believes the increase in shipments from 200mm to 300mm will continue and is evidence that Varian
Semiconductors tools meet the newest technology requirements. Memory manufacturers typically produce integrated circuits used for DRAM, flash, etc. which store and retrieve information, while logic manufacturers typically produce integrated
circuits used to process data. Significant purchasing fluctuations from memory, logic and foundry fabs could lead to significant fluctuations in Varian Semiconductors revenues, even if the total ion implant market remains flat.



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The first table below shows Varian Semiconductors calendar year 2005 and 2004 market share, as reported by Gartner
Dataquest in April 2006 and April 2005. Market share estimates are calculated on a subset of revenue, and information reported by Gartner Dataquest may not be consistent on a company by company basis. The second table below shows the total available
market for ion implanter sales in calendar years 2005 and 2004, as reported by Gartner Dataquest in April 2006 and April 2005. The total available market represents an estimated worldwide total revenue for ion implanters sold by all companies which
sell ion implanters during each of the calendar years.

Market Share



|               |  |                     |   |  |              |   |  |        |  
|-------------- |  | ------------------- | - |  | ------------ | - |  | ------ | -
|               |  | Calendar Year Ended |  
|               |  | December 31,        |   |  | December 31, |   |  |        |  
|               |  | 2005                |   |  | 2004         |   |  | Change |  
|By market      |  |                     |   |  |              |   |  |        |  
|Medium current |  | 58                  | % |  | 52           | % |  | 6      | %
|High current   |  | 38                  | % |  | 22           | % |  | 16     | %
|High energy    |  | 10                  | % |  | 10           | % |  | 0      | %
|Overall        |  | 39                  | % |  | 31           | % |  | 8      | %

Total Available Market



|               |  |                     |       |              |   |        |  |     |  
|-------------- |  | ------------------- | ----- | ------------ | - | ------ |  | --- | -
|               |  | Calendar Year Ended |      
|               |  | December 31,        |       | December 31, |   |        | 
|(in millions)  |  | 2005                |       | 2004         |   | Change | 
|By market      |  |                     |       |              |   |        |  |     |  
|Medium current |  | $                   | 330   |              | $ | 447    |  | -26 | %
|High current   |  |                     | 598   |              |   | 595    |  | 1   | %
|High energy    |  |                     | 194   |              |   | 223    |  | -13 | %
|               |  |                     |       |              |   |        |  |     |  
|Overall        |  | $                   | 1,122 |              | $ | 1,265  |  | -11 | %
|               |  |                     |       |              |   |        |  |     |  

Market Share and Total Available Market. Market share and Total Available Market research data is also
published by VLSI Research Inc. In April 2006, VLSI Research Inc. reported that Varian Semiconductors overall market share was 41% and that the Total Available Market was $1,070 million for calendar year 2005. Varian Semiconductors
increase in high current and medium current market share has led to increased revenues, as the total available market for ion implanter sales was down 11% during calendar year 2005, compared to calendar year 2004. Varian Semiconductors
increase in high current market share is a result of the industry shift to single wafer implanters at advanced technology nodes (90nm and below). Varian Semiconductor began developing single wafer high current tools during 1994 and feels it is
currently the industry leader. In addition, Varian Semiconductor continues to invest in research and development to maintain its medium current market share lead. High energy implanters are the smallest component of the total available market for
ion implanter sales and Varian Semiconductor maintained its market share. Please refer to Varian Semiconductors annual report on Form 10-K for the fiscal year ended September 30, 2005 for additional information on the technology and
markets for ion implantation equipment.

Cost of Product Revenue. Cost of product revenue was $91.9 million and gross margin was 43.5% for the third
quarter of fiscal year 2006, compared to the cost of product revenue of $84.2 million and gross margin of 41.6% for the third quarter of fiscal year 2005. For the first nine months of fiscal year 2006, the cost of product revenue was $266.6 million
and gross margin was 41.0%, compared to the cost of product revenue of $212.0 million and gross margin of 42.3% for the first nine months of fiscal year 2005. Cost of product revenue for the third quarter and first nine months of fiscal year 2006
included $0.3 million and $0.8 million, respectively, of equity-based compensation costs recorded upon the adoption of SFAS No. 123(R), Share-Based Payment (SFAS No. 123 (R)) as of October 1, 2005. The primary
drivers of the increase in gross margin, quarter over quarter, were higher parts sales and customer mix. Additionally, the current quarter included the sale of certain inventory for which the carrying value had been reduced in previous periods and
the prior year included inventory charges. The decrease in gross product margin on a year-to-date basis was primarily related to costs in the first quarter of fiscal 2006 associated with new account penetration initiatives, fluctuations in inventory
charges associated with product transitions and legacy parts demand, and lower levels of upgrades sales. New account penetration initiatives primarily relate to the sale of high current tools to new customers, new regions (where local infrastructure
is not already in place) and/or new customer fabs and strategic pricing decisions relative to new customer purchases. In addition, upgrades sales traditionally have higher margins than sales of other products, therefore, lower volume of upgrade
sales negatively impacts gross margin.

Cost of Service Revenue.Cost of service revenue was $13.2 million and gross margin was 36.3% for the third
quarter of fiscal year 2006, compared to a cost of service revenue of $12.1 million and gross margin of 39.4% for the third quarter of fiscal year 2005. Cost of service revenue was $36.1 million and gross margin was 38.5% for the first nine months
of fiscal year 2006, compared to a cost of service revenue of $37.4 million and gross margin of 38.3% for the first nine months of fiscal year 2005. Cost of service revenue for the third quarter and first nine months of fiscal year 2006 included
$0.2 million and $0.7 million, respectively, of equity-based compensation costs recorded upon the adoption of SFAS No. 123(R) as of October 1, 2005. The increase in cost of service was the result of additional contract and paid service
costs. The decrease in service margins on a quarter-over-quarter basis is related to decreased margins on installations and the mix of customers for both contracts and paid service. The fair value of installations is assessed periodically and is
largely based upon the historical experience of the effort and cost to complete installations. The fair value of tool installation is determined at the time of tool shipment. The decrease in



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cost of service and related increase in service margin for the first nine months of fiscal year 2006 compared to the
first nine months of fiscal year 2005 is primarily due to the first quarter 2006 reduced installation costs recognized prior to the reduction in installation fair value. As stated above, as products have matured and the installation requires less
effort to complete, the fair value of installation revenue per installation is reduced. Based upon the results of the first quarter 2006, the fair value was reduced for certain products shipped in the third quarter 2006. Generally, installation
revenue is influenced by shipment volume of systems, product mix, customer mix, and timing of customer acceptances.

Research and Development.
Research and development expenses were $22.9 million and $66.7 million, respectively, for the third quarter and first nine months of fiscal year 2006, compared to $19.4 million and $57.1 million, respectively, for the third quarter and first nine
months of fiscal year 2005. Research and development expense for the third quarter and first nine months of fiscal year 2006 included $0.8 million and $2.8 million, respectively, of equity-based compensation costs recorded upon the adoption of SFAS
No. 123(R) as of October 1, 2005. The increase in research and development spending is also attributable to Varian Semiconductors rapid product development cycle and continuing efforts to improve productivity and technical
development of its products. In addition to developing new high current products, Varian Semiconductor continues to focus on maintaining its leadership position in the market for medium current implanters.

Marketing, General and Administrative. Marketing, general and administrative expenses were $27.8 million and $87.6 million, respectively, for the third quarter
and first nine months of fiscal year 2006, compared to $26.2 million and $78.0 million, respectively, for the third quarter and first nine months of fiscal year 2005. Marketing, general and administrative expenses for the third quarter and first
nine months of fiscal year 2006 included $3.2 million and $10.1 million, respectively, of equity-based compensation costs recorded upon the adoption of SFAS No. 123(R) as of October 1, 2005. Additionally, the first nine months of fiscal
year 2005 included a $3.5 million charge associated with the retirement of the President and Chief Operating Officer of Varian Semiconductor effective as of July 1, 2005. Exclusive of the equity-based compensation costs in the first nine months
of fiscal year 2006 and the retirement costs in the first nine months of fiscal year 2005, the increase is primarily related to costs to demonstrate the capabilities of Varian Semiconductors latest generation of products at Varian
Semiconductors factory and investment in customer service support, partially offset by changes in variable compensation plans.

Interest Income
and Interest Expense. During the third quarter and first nine months of fiscal year 2006, Varian Semiconductor earned $5.8 million and $16.1 million, respectively, in net interest income, compared to $2.9 million and $12.9 million in net
interest income for the same respective periods of fiscal year 2005. Interest income for the first nine months of fiscal year 2006 includes $1.3 million related to the release of tax refunds by the IRS upon the conclusion of a multi-year tax
examination. Interest income in the first nine months of fiscal year 2005 includes $5.7 million related to past due royalties from Applied Materials as a result of an arbitration ruling (see also Royalty and license). Higher cash and
investment balances and rates, along with an increased portfolio of investments compared to the total cash and investments balance has led to higher interest income from investments.

Other Income (Expense), Net. Other income (expense), net, was $0.7 million in income for the third quarter and $0.6 million in income for the first nine months of fiscal year 2006, compared to other income of
less than $0.1 million and other income of $2.8 million, respectively for the third quarter and first nine months of fiscal year 2005. Other income for the third quarter of fiscal 2006 included a gain on the sale of certain non-operating real estate
owned by Varian Semiconductor. In the first nine months of fiscal year 2005, other income included $2.7 million for the reduction of an estimated loss contingency that had been established to cover any residual indemnification obligations related to
patent infringement and antitrust litigation related to the Applied Materials settlement (see also Royalty and license). The statute of limitations on the indemnification obligations expired during the first quarter of fiscal year 2005 (See
Note 12. Commitments, Contingencies and Guarantees in the Notes to the Unaudited Interim Consolidated Financial Statements).

Provision for (benefit
from) Income Taxes. Varian Semiconductors effective income tax rate was 32% for the first nine months of fiscal year 2006 and 31.0% for the same period in fiscal year 2005. Inclusive of the one-time tax benefit received in the first
quarter of fiscal year 2006, as discussed in the following paragraph, and other one time items the actual tax rate was a provision of 20% for the first nine months of fiscal year 2006. The increase in the effective rate, exclusive of the benefit
received, is primarily due to increased profits on increased sales. The rate is lower than the U.S. federal statutory rate principally due to credits and lower-taxed foreign income. Future tax rates may vary from the historic rates depending on the
worldwide composition of earnings and the continuing availability of income tax credits as well as the potential resolution of tax contingencies.

In the
normal course of business, Varian Semiconductor and its subsidiaries are examined by various tax authorities, including the IRS. The IRS conducted an examination for the tax years 1999 through 2003 as part of its routine examinations of Varian
Semiconductors income tax returns. The IRS completed fieldwork for this examination of Varian Semiconductor in the fourth quarter of fiscal year 2005 and submitted its report to the Joint Committee for final approval. Varian Semiconductor was
notified of Joint Committee approval in the first quarter of fiscal year 2006. Related to the conclusion of this examination, Varian Semiconductor recorded a net tax benefit of $9.0 million in the first quarter of fiscal year 2006.



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Net Income. As a result of the foregoing factors, in the third quarter and first nine months of fiscal year 2006,
Varian Semiconductor recorded net income of $24.7 million and $61.8 million, respectively, compared to net income of $19.3 million and $58.4 million for the same respective periods of fiscal year 2005. The net income per diluted share was $0.43 for
the third quarter of fiscal year 2006, compared to net income per diluted share of $0.34 for the third quarter of fiscal year 2005. The net income per diluted share was $1.08 for the first nine months of fiscal year 2006, compared to net income per
diluted share of $1.04 for the first nine months of fiscal year 2005.

Liquidity and Capital Resources

Varian Semiconductor generated $78.3 million of cash from operations during the first nine months of fiscal year 2006, compared to $49.1 million of cash generated from
operations during the first nine months of fiscal year 2005. Cash provided by operations in the first nine months of fiscal year 2006 was primarily a result of net income of $61.8 million, a decrease in other current assets of $17.5 million, an
increase in accounts payable of $14.0 million, and non-cash expenses such as stock-based compensation of $14.4 million and depreciation and amortization of $9.8 million. These changes were partially offset by a $27.2 million increase in accounts
receivable. The decrease in other current assets is primarily related to the receipt of refunds from the IRS associated with the conclusion of a multi-year tax examination. The increase in accounts payable is related to a higher manufacturing build
schedule. The increase in accounts receivable is related to the volume and timing of revenue recognized during the third quarter of fiscal year 2006 as compared to the fourth quarter of fiscal year 2005. Cash provided by operations in the first nine
months of fiscal year 2005 was primarily a result of net income of $58.4 million, an increase in deferred revenue of $9.9 million. These increases were partially offset by a $44.3 million increase in inventories, a $10.3 million increase in accounts
receivable, and a related increase in accounts payable of $4.0 million.

Varian Semiconductor used $315.3 million of cash and cash equivalents for the
purchase of investments during the first nine months of fiscal year 2006, and $9.8 million of cash and cash equivalents for the purchase of property, plant and equipment during the same period. These outflows were partially offset by proceeds from
sales and maturities of investments of $296.0 million during the period. In the first nine months of fiscal year 2005, Varian Semiconductor used $172.2 million of cash and cash equivalents for the purchase of investments, and $10.6 million of cash
and cash equivalents for the purchase of property, plant and equipment. These were partially offset by proceeds from sales and maturities of investments of $96.9 million during the first nine months of fiscal year 2005.

During the first nine months of fiscal year 2006, Varian Semiconductor used $24.6 million of cash in financing activities, primarily due to $53.8 million for the
repurchase of treasury stock. This was offset by $27.0 million of cash received from the issuance of common stock upon the exercise of stock options and the issuance of common stock under the Employee Stock Purchase Plan. During the first nine
months of fiscal year 2005, Varian Semiconductor generated $7.0 million of cash from financing activities, primarily due to $11.0 million from the issuance of common stock upon the exercise of stock options and the issuance of common stock under the
Employee Stock Purchase Plan, offset by $3.9 million in repayment of short- and long-term borrowings.

Varian Semiconductors Board of Directors
adopted a share repurchase program on October 22, 2004, pursuant to which Varian Semiconductor is authorized to repurchase shares of its common stock on the open market. During the first quarter of fiscal year 2006, when Varian Semiconductor
first made repurchases under this program, Varian Semiconductor was authorized to expend up to $100 million in repurchasing its common stock under the program. On August 1, 2006, Varian Semiconductors Board of Directors amended the share
repurchase program by increasing the amount of funds that may be expended in repurchasing common stock from $100 million to $200 million. In the first quarter of fiscal year 2006, Varian Semiconductor repurchased 796,273 shares at a weighted-average
price of $25.17 per share. No shares were repurchased prior to the first quarter of fiscal year 2006. In the third quarter of fiscal year 2006, Varian Semiconductor repurchased 1,123,915 shares at a weighted-average price of $30.07 per share.

Varian Semiconductors liquidity is affected by many factors, some based on the normal operations of the business and others related to the
uncertainties of the industry and global economies. Varian Semiconductor believes that cash, cash equivalents and investments of $518 million at June 30, 2006 will be sufficient to satisfy working capital requirements, commitments for capital
expenditures and other purchase commitments, environmental contingencies and cash requirements for the foreseeable future.



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Off-Balance Sheet Arrangements

Varian Semiconductor does not have any relationships with unconsolidated entities or financial partnerships, such as entities often referred to as structured finance or special purpose entities, which would have been
established for the purpose of facilitating off-balance-sheet arrangements or other contractually narrow or limited purposes. As such, Varian Semiconductor is not exposed to any financing, liquidity, market or credit risk that could arise if Varian
Semiconductor had engaged in such relationships.

Contractual Obligations

Under GAAP, certain obligations and commitments are not required to be included in the consolidated balance sheets and statements of income. These obligations and commitments, while entered into in the normal course
of business, may have a material impact on liquidity. The following commitments as of June 30, 2006 have not been included in the consolidated balance sheets and statements of income included under Item 1. Consolidated Financial
Statements; however, they have been disclosed in the following table in order to provide a more complete picture of Varian Semiconductors financial position and liquidity.



|                           |  |                        |        |             |   |        |  |       |     |  |   |  
|-------------------------- |  | ---------------------- | ------ | ----------- | - | ------ |  | ----- | --- |  | - | -
|                           |  | Payments Due by Period |        |            
|                           |  |                        |        | Less than 1 |   | 1-3    |  | 3-5  
|                           |  | Total                  |        | Year        |   | Years  |  | Years
|                           |  | (Amounts in thousands) |        |            
|Operating leases           |  | $                      | 1,963  |             | $ | 1,509  |  | $     | 450 |  | $ | 4
|Purchase order commitments |  |                        | 69,050 |             |   | 69,045 |  |       | 5   |  |   | 
|                           |  |                        |        |             |   |        |  |       |     |  |   |  
|Total commitments          |  | $                      | 71,013 |             | $ | 70,554 |  | $     | 455 |  | $ | 4
|                           |  |                        |        |             |   |        |  |       |     |  |   |  

Transactions with Affiliates and Related Parties

Operations prior to April 2, 1999 had been part of the former Varian Associates, Inc. (VAI), now known as Varian Medical Systems, Inc. (VMS)
(See Note 12. Commitments, Contingencies and Guarantees in the Notes to the Unaudited Interim Consolidated Financial Statements). During fiscal years 2005, 2004 and 2003, Varian Semiconductor was charged $1.2 million, $1.6 million and $1.4 million,
respectively, by VMS in settlement of obligations related to operations prior to April 2, 1999. During the first nine months of fiscal year 2006, Varian Semiconductor was charged by VMS $0.9 million in settlement of these obligations. During
the first nine months of fiscal year 2005, Varian Semiconductor was charged by VMS $0.9 million in settlement of these obligations.

Recent Accounting
Pronouncements

In May 2005, the FASB issued SFAS No. 154, Accounting Changes and Error Corrections. This statement replaces APB
Opinion No. 20, Accounting Changes, and SFAS No. 3, Reporting Accounting Changes in Interim Financial Statements, and changes the requirements for the accounting for and reporting of a change in accounting
principle. This statement applies to all voluntary changes in accounting principles. It also applies to changes required by an accounting pronouncement in the unusual instance that the pronouncement does not include specific transition provisions.
When a pronouncement includes specific transition provisions, those provisions should be followed. SFAS No. 154 requires retrospective application to prior periods financial statements of voluntary changes in accounting principles. SFAS
No. 154 is effective for accounting changes and corrections of errors made during Varian Semiconductors fiscal year 2007, beginning on September 30, 2006. Varian Semiconductor does not believe the adoption of SFAS No. 154 will
have a material impact on its financial statements.

In June 2006, the FASB ratified the consensus reached by the EITF on Issue No. 06-3, How
Taxes Collected from Customers and Remitted to Governmental Authorities Should Be Presented in the Income Statement (That Is, Gross versus Net Presentation) (EITF 06-3). EITF 06-3 states that a company should disclose its
accounting policy regarding the gross or net presentation of certain taxes. If taxes included in gross revenues are significant, a company should disclose the amount of such taxes for each period for which an income statement is presented (i.e.,
both interim and annual periods). Taxes within the scope of EITF 06-3 are those that are imposed on and concurrent with a specific revenue-producing transaction, such as sales tax or value-added tax. Taxes assessed on an entitys activities
over a period of time, such as gross receipts taxes, are not within the scope of the issue. EITF 06-3 will be effective for Varian Semiconductors second quarter of fiscal year 2007. The disclosures required under this Issue, which may be
presented on an aggregate basis, are effective retrospectively for all periods presented. Varian Semiconductor is in the process of evaluating whether the adoption of EITF 06-3 will have a material impact on its financial statements.

In July 2006, the FASB issued FASB Interpretation No. 48, Accounting for Uncertainty in Income Taxesan interpretation of FASB Statement
No. 109. This interpretation clarifies the accounting for uncertainty in income taxes recognized in an enterprises financial statements in accordance with FASB Statement No. 109, Accounting for Income Taxes. This
interpretation prescribes a recognition threshold and measurement attribute for the financial statement recognition and measurement of a tax position taken or expected to be taken in a tax return. This interpretation also provides guidance on
derecognition, classification, interest and penalties, accounting in interim periods, disclosure, and transition. This interpretation will be effective for Varian Semiconductor for its fiscal year 2008, beginning September 29, 2007. Varian
Semiconductor is in the process of evaluating whether the adoption of this interpretation will have a material impact on its financial statements.



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ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURE ABOUT MARKET RISK

Foreign Currency Exchange Risk

As a multinational company, Varian Semiconductor faces exposure to adverse movements in foreign currency exchange rates. This exposure may change over time as Varian
Semiconductors business practices evolve and could impact Varian Semiconductors financial results. However, a 10% change in the exchange rate of the U.S. dollar against other major currencies would not have a material effect on Varian
Semiconductors results of operations. Historically, Varian Semiconductors primary exposures have resulted from non-U.S. dollar-denominated sales and purchases in Asia Pacific and Europe. Varian Semiconductor does not enter into forward
exchange contracts for trading purposes. Varian Semiconductors forward exchange contracts generally range from one to nine months in original maturity. No forward exchange contract exceeds one year in original maturity.

Varian Semiconductor hedges currency exposures that are associated with certain of its assets and liabilities denominated in various non-U.S. dollar currencies. The
aggregate exchange losses for the third quarter and first nine months of fiscal year 2006 were $95,000 and $136,000, respectively. For the third quarter and first nine months of fiscal year 2005, aggregate exchange losses were $84,000 and $51,000,
respectively.

Forward exchange contracts outstanding are summarized as follows (amounts in thousands):



|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|----------------------------------------- |  | ------------- | ------ | ------------------ | ------ | ----- | - | -------- |  | -------- | ------ | ----- | -------- |  | - | ------
|                                          |  | June 30, 2006 |        | September 30, 2005
|                                          |  | Notional      |        | Contract           |        | Fair  |   | Notional |  | Contract |        | Fair 
|                                          |  | Value         |        | Rate               |        | Value |   | Value    |  | Rate     |        | Value
|Foreign currency purchase contracts:      |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Korean Won                                |  | $             | 2,292  |                    | 953.71 |       | $ | 2,304    |  | $        | 8,839  |       | 1,034.63 |  | $ | 8,699 
|New Taiwan Dollar                         |  |               | 1,507  |                    | 32.06  |       |   | 1,481    |  |          | 638    |       | 32.60    |  |   | 625   
|Euro                                      |  |               | 1,395  |                    | 0.78   |       |   | 1,373    |  |          | 1,002  |       | 0.80     |  |   | 967   
|Singapore Dollar                          |  |               | 646    |                    | 1.58   |       |   | 639      |  |          |       |       |         |  |   |      
|Japanese Yen                              |  |               | 405    |                    | 114.13 |       |   | 397      |  |          |       |       |         |  |   |      
|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Total foreign currency purchase contracts |  | $             | 6,245  |                    |        |       | $ | 6,194    |  | $        | 10,479 |       |          |  | $ | 10,291
|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Foreign currency sell contracts:          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Japanese Yen                              |  | $             | 6,700  |                    | 113.98 |       | $ | 6,565    |  | $        | 21,268 |       | 110.89   |  | $ | 20,868
|Korean Won                                |  |               | 8,257  |                    | 953.00 |       |   | 8,295    |  |          | 10,637 |       | 1,051.30 |  |   | 10,417
|New Taiwan Dollar                         |  |               | 114    |                    | 32.43  |       |   | 113      |  |          | 410    |       | 33.21    |  |   | 409   
|Israeli Shekel                            |  |               | 557    |                    | 4.53   |       |   | 563      |  |          | 860    |       | 4.50     |  |   | 840   
|Singapore Dollar                          |  |               | 145    |                    | 1.58   |       |   | 144      |  |          |       |       |         |  |   |      
|British Pound                             |  |               |       |                    |       |       |   |         |  |          | 395    |       | 0.55     |  |   | 381   
|Euro                                      |  |               |       |                    |       |       |   |         |  |          | 89     |       | 0.83     |  |   | 89    
|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Total foreign currency sell contracts     |  | $             | 15,773 |                    |        |       | $ | 15,680   |  | $        | 33,659 |       |          |  | $ | 33,004
|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       
|Total contracts                           |  | $             | 22,018 |                    |        |       | $ | 21,874   |  | $        | 44,138 |       |          |  | $ | 43,295
|                                          |  |               |        |                    |        |       |   |          |  |          |        |       |          |  |   |       

Varian Semiconductor uses derivative instruments to protect its foreign operations from fluctuations in earnings
and cash flows caused by volatility in currency exchange rates. Varian Semiconductor hedges its current exposures and a portion of its anticipated foreign currency exposures with hedging instruments having terms of up to twelve months.

Varian Semiconductors international sales, except for those in Japan, are primarily denominated in the U.S. dollar. For foreign currency-denominated sales,
however, the volatility of the foreign currency markets represents risk to Varian Semiconductor. Upon forecasting the exposure, Varian Semiconductor enters into hedges with forward sales contracts whose critical terms are designed to match those of
the underlying exposure. These hedges are evaluated for effectiveness at least quarterly using the change in value of the forward contracts to the change in value of the underlying transaction, with the effective portion of the hedge accumulated in
other comprehensive income. Any measured ineffectiveness is included immediately in other income and expense in the consolidated statements of operations. There were seven forward foreign exchange sell contracts designated as hedges of anticipated
product sales in Japanese Yen outstanding at June 30, 2006 totaling an equivalent of $31.3 million. In addition, there were two forward foreign exchange purchase contract totaling an equivalent of $10.2 million offsetting two of the forward
sell contracts.



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There were approximately $160 thousand in net unrealized losses on these forward Yen contracts as of June 30, 2006.
There were approximately $1.2 million in net unrealized gains on forward Yen revenue contracts as of September 30, 2005. The fair value of forward exchange contracts generally reflects the estimated amounts that Varian Semiconductor would
receive or pay to terminate the contracts at the reporting date. The notional amounts of forward exchange contracts are not a measure of Varian Semiconductors exposure.

Interest Rate Risk

Although payments under certain of Varian Semiconductors overseas borrowing facilities are
tied to market indices, Varian Semiconductor is not exposed to material interest rate risk from these borrowing facilities. Varian Semiconductor has no material cash flow exposure due to rate changes for cash equivalents and investments. Varian
Semiconductor maintains cash investments primarily in U.S. Treasury, government agency and investment-grade corporate and municipal securities, as well as short-term time deposits with investment grade financial institutions. Cash equivalents at
June 30, 2006 and September 30, 2005 were $200.4 million and $182.1 million, respectively. At June 30, 2006 and September 30, 2005, Varian Semiconductors investments were $299.0 million and $280.6 million, respectively, and
consisted primarily of U.S. Treasury, government agency and corporate bonds and certificates of deposit with ratings of AA or better.

Commodity Price
Risk

Varian Semiconductor is not exposed to material commodity price risk.

ITEM 4. CONTROLS AND PROCEDURES

Evaluation of Disclosure Controls and Procedures

The management of Varian Semiconductor, with the participation of the Chief Executive Officer and Chief Financial Officer, evaluated the effectiveness of the disclosure
controls and procedures of Varian Semiconductor as of June 30, 2006. The term disclosure controls and procedures, as defined in Rules 13a-15(e) and 15d-15(e) under the Securities Exchange Act of 1934, as amended (the Exchange
Act), means controls and other procedures of a company that are designed to ensure that information required to be disclosed by a company in the reports that it files or submits under the Exchange Act is recorded, processed, summarized and
reported, within the time periods specified in the SECs rules and forms. Disclosure controls and procedures include, without limitation, controls and procedures designed to ensure that information required to be disclosed by a company in the
reports that it files or submits under the Exchange Act is accumulated and communicated to the companys management, including its principal executive and principal financial officers, as appropriate to allow timely decisions regarding required
disclosure. Management recognizes that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving their objectives and management necessarily applies its judgment in evaluating the
cost-benefit relationship of possible controls and procedures. Based on the evaluation of Varian Semiconductors disclosure controls and procedures as of June 30, 2006, the Chief Executive Officer and Chief Financial Officer concluded
that, as of such date, Varian Semiconductors disclosure controls and procedures were effective at the reasonable assurance level.

Changes in
Internal Control Over Financial Reporting

No change in Varian Semiconductors internal control over financial reporting (as defined in Rules
13a-15(f) and 15d-15(f) under the Exchange Act) occurred during the fiscal quarter ended June 30, 2006 that has materially affected, or is reasonably likely to materially affect, the internal control over financial reporting.



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PART II. OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS

Information required by this Item is provided in Note 12. Commitments, Contingencies and
Guarantees to the Unaudited Interim Consolidated Financial Statements under Part I, Item 1 and is incorporated herein by reference.

ITEM 1A. Risk Factors

The semiconductor industry is cyclical, and a slowdown in demand for Varian
Semiconductors semiconductor manufacturing equipment may negatively affect financial results.

The semiconductor industry historically has been
cyclical in nature and has experienced periodic downturns. The industry may experience volatility in product pricing and in product demand. Volatility may result in significant reductions and delays in the purchase of semiconductor manufacturing
equipment and the construction of new fab facilities. Even though Varian Semiconductors revenues may fluctuate significantly from period to period, in order to remain competitive, Varian Semiconductor continues to invest in research and
development and to maintain its worldwide customer service and support capabilities. These investments in the business may adversely affect Varian Semiconductors financial results.

Varian Semiconductor faces intense competition in the semiconductor equipment industry.

Significant competitive
factors in semiconductor equipment manufacturing include the strength of customer relationships, pricing, technological performance and timing, distribution capabilities and financial viability. Varian Semiconductor believes that in order to remain
competitive in this industry, it needs to devote significant financial resources to research and development, to offer and market a broad range of products, and maintain and enhance customer service and support centers worldwide. The semiconductor
equipment industry is dominated by large manufacturers who have resources to support customers worldwide, and some of Varian Semiconductors competitors have substantially greater financial resources and more extensive engineering,
manufacturing, marketing, service and support than does Varian Semiconductor. With fewer resources, Varian Semiconductor may not be able to match the product offerings or customer service and technical support offered by its competitors. In
addition, there are several smaller companies that provide innovative technology that may have performance advantages over Varian Semiconductors systems. If these manufacturers continue to improve their product performance and pricing, enter
into strategic relationships, expand their current targeted geographic territory or consolidate with large equipment manufacturers, sales of Varian Semiconductors products may be adversely affected.

Varian Semiconductor derives a substantial portion of its revenues from a small number of customers, and its business may be harmed by the loss of any one significant
customer.

Varian Semiconductor has sold significant percentages of its systems to its major customers, some of which include Elpida Memory, Inc., Hynix
Semiconductor, Inc., Infineon Technologies AG, International Business Machines Corporation, Intel Corporation, Micron Technology, Inc., Samsung Electronics Company Limited, Sony Corporation, STMicroelectronics, Texas Instruments, Inc., Taiwan
Semiconductor Manufacturing Corporation, Limited and United Microelectronics Corporation. During some quarters, some of these customers have individually accounted for more than 10% of Varian Semiconductors total revenue. Varian Semiconductor
expects that sales of its products to relatively few customers will continue to account for a high percentage of its revenue in the foreseeable future. Furthermore, Varian Semiconductor may have difficulty attracting additional large customers
because its sales depend, in large part, upon the decision of a prospective customer to increase manufacturing capacity in an existing fabrication facility or to transfer a manufacturing process to a new fabrication facility, both of which typically
involve a significant capital commitment. Once a semiconductor manufacturer has selected a particular suppliers capital equipment, the manufacturer generally relies upon that equipment for the specific production line application and
frequently will attempt to consolidate its other capital equipment requirements with the same supplier. Consequently, Varian Semiconductor may experience difficulty in selling to a prospective customer if that customer initially selects a
competitors capital equipment.

Varian Semiconductors quarterly results of operations are likely to fluctuate, and as a result, Varian
Semiconductor may fail to meet the expectations of its investors and securities analysts, which may cause the price of its common stock to decline.

Varian Semiconductor has experienced and expects to continue to experience significant fluctuations in its quarterly financial results. From time to time, customers may accelerate, postpone or cancel shipments, or production difficulties
may delay shipments. A cancellation, delay in shipment or delay in customer acceptance of the product upon installation in any quarter



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may cause revenue in such quarter to fall significantly below expectations, which could cause the market price of Varian
Semiconductors common stock to decline. Varian Semiconductors financial results also fluctuate based on gross profit realized on sales. Gross profit as a percentage of revenue may vary based on a variety of factors, including the mix and
average selling prices of products sold, costs to manufacture and customize systems and inventory management. In addition, a number of other factors may impact Varian Semiconductors quarterly financial results, including, but not limited to
the following:



| |  |  | changing global economic conditions and worldwide political instability;
| | - |  | ------------------------------------------------------------------------



| |  |  | general conditions in the semiconductor equipment industry;
| | - |  | -----------------------------------------------------------



| |  |  | unexpected procurement or manufacturing difficulties;
| | - |  | -----------------------------------------------------



| |  |  | pricing of key components;
| | - |  | --------------------------



| |  |  | fluctuations in foreign exchange rates;
| | - |  | ---------------------------------------



| |  |  | a technological change that Varian Semiconductor is unable to address with its products;
| | - |  | ----------------------------------------------------------------------------------------



| |  |  | a failure to achieve continued market acceptance of Varian Semiconductors key products;
| | - |  | ----------------------------------------------------------------------------------------



| |  |  | ability to develop, introduce and market new, enhanced and competitive products in a timely manner;
| | - |  | ---------------------------------------------------------------------------------------------------



| |  |  | introduction of new products by Varian Semiconductors competitors;
| | - |  | -------------------------------------------------------------------



| |  |  | strategic technology investment decisions;
| | - |  | ------------------------------------------



| |  |  | legal or technical challenges to Varian Semiconductors products and technology; and
| | - |  | ------------------------------------------------------------------------------------



| |  |  | adverse weather conditions at its manufacturing facilities or customers facilities.
| | - |  | -----------------------------------------------------------------------------------

Because Varian Semiconductors operating expenses are based on anticipated capacity levels and a high percentage of Varian Semiconductors expenses are relatively fixed, a fluctuation in the timing of
recognition of revenue and the level of gross profit from a single transaction could cause financial results to vary significantly from quarter to quarter.

It is difficult for Varian Semiconductor to predict the quarter in which it will be recognizing revenue from large product orders.

Varian
Semiconductor customarily sells a relatively small number of systems within any period. Consequently, Varian Semiconductors revenue and financial results could be negatively impacted for a particular quarter if anticipated orders from even a
few customers are not received in time to permit shipment and/or there are delays in customer acceptance of the product upon installation. Generally, Varian Semiconductor recognizes all or a portion of the revenue from a product upon shipment
provided title and risk of loss has passed to the customer, evidence of an arrangement exists, fees are contractually fixed or determinable, collectibility is reasonably assured through historical collection results and regular credit evaluations,
and there are no uncertainties regarding customer acceptance. Please refer to the full revenue recognition policy in the Critical Accounting Policies and Significant Judgments and Accounting Estimates section of this report. As a result, it is often
difficult to determine the timing of product revenue recognition. In addition, Varian Semiconductors product order backlog at the beginning of each quarter may not include all systems needed to achieve expected revenues for that quarter.
Because Varian Semiconductor may build systems according to forecast, the absence of a significant backlog for an extended period of time could adversely affect financial results.

Varian Semiconductors future business depends, in part, on its ability to successfully introduce and manage the transition to new products, and Varian Semiconductor may not succeed in accomplishing these
goals.

Varian Semiconductor believes that its future success will depend on its ability to develop, manufacture and successfully introduce new systems
and product lines with improved capabilities and to continue enhancing existing products; in particular, products that respond to the trend toward single wafer processing and 300mm wafer processing at more advanced nodes. Varian Semiconductor
derives virtually all of its revenue from sales and servicing of systems and related products and services. Varian Semiconductor must accurately forecast the demand for new products while managing the transition from older



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products. In addition, Varian Semiconductor may be unable to complete the development or meet the technical
specifications of new systems or enhancements or to manufacture and ship these systems or enhancements in volume and on time, which may harm its reputation and business. If any of Varian Semiconductors new products have reliability or quality
problems, Varian Semiconductor may incur additional warranty and service expenses, experience a decline in product orders or incur higher manufacturing costs to correct such problems, all of which could adversely affect financial results.

Varian Semiconductor is subject to the risks of operating internationally and it derives a substantial portion of its revenues from outside the U.S.

International revenue accounts for a substantial portion of Varian Semiconductors revenue. Because Varian Semiconductor relies on sales to
customers in Asia Pacific for a significant portion of its revenue, its business is very likely to be adversely impacted by economic downturns and instability in that region. Varian Semiconductors business in Asia Pacific is affected by demand
in each country. In addition, international sales are subject to risks, including, but not limited to:



| |  |  | Changes in legal and regulatory requirements;
| | - |  | ---------------------------------------------



| |  |  | political and economic instability and acts of terrorism;
| | - |  | ---------------------------------------------------------



| |  |  | difficulties in accounts receivable collection;
| | - |  | -----------------------------------------------



| |  |  | natural disasters or public health crises;
| | - |  | ------------------------------------------



| |  |  | difficulties in staffing for cultural diversity and managing international operations;
| | - |  | --------------------------------------------------------------------------------------



| |  |  | foreign trade disputes; and
| | - |  | ---------------------------



| |  |  | fluctuations in foreign exchange rates.
| | - |  | ---------------------------------------

If Varian Semiconductor is
unable to protect its proprietary rights adequately, it may lose its ability to compete effectively in the semiconductor equipment industry.

Varian
Semiconductor relies on obtaining and maintaining patent, copyright and trade secret protection for significant new technologies, products and processes and obtaining key licenses because of the length of time and expense associated with bringing
new products through the development process to market. Varian Semiconductor intends to continue to file applications as appropriate for patents covering new products and manufacturing processes. However, Varian Semiconductor cannot provide
assurance of the following:



| |  |  | that patents will be issued from any pending or future patent applications owned by, or licensed to, Varian Semiconductor;
| | - |  | --------------------------------------------------------------------------------------------------------------------------



| |  |  | that the claims allowed under any issued patents will be sufficiently broad to protect Varian Semiconductors technology position against competitors;
| | - |  | ------------------------------------------------------------------------------------------------------------------------------------------------------



| |  |  | that any issued patents owned by or licensed to Varian Semiconductor will not be challenged, invalidated or circumvented; and
| | - |  | -----------------------------------------------------------------------------------------------------------------------------



| |  |  | that the rights granted under Varian Semiconductors patents will provide it with competitive advantages.
| | - |  | ---------------------------------------------------------------------------------------------------------

Varian Semiconductor also has agreements with third parties for licensing of patented or proprietary technology. These agreements include royalty-bearing licenses and
technology cross-licenses.

In addition, Varian Semiconductor maintains and enforces its trademarks to increase customer recognition of its products. If
its trademarks are used by unauthorized third parties, Varian Semiconductors business may be harmed. Varian Semiconductor also relies on contractual restrictions on disclosure, copying and transferring title, including confidentiality
agreements with vendors, strategic partners, co-developers, employees, consultants and other third parties to protect its proprietary rights. If these contractual agreements are breached, Varian Semiconductor may not have adequate remedies for
any such breaches. Varian Semiconductor also cannot provide assurance that its trade secrets will not otherwise become known to or be independently developed by others.



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Patent claims may be expensive to pursue, defend or settle and may substantially divert Varian Semiconductors
resources and the attention of management.

Varian Semiconductor could incur substantial costs and diversion of management resources in defending patent
suits brought against it or in asserting its patent rights against others. If the outcome of any such litigation is unfavorable to Varian Semiconductor, its business may be harmed. Varian Semiconductor may not be aware of pending or issued patents
held by third parties that relate to its products or technologies. In the event that a claim is asserted against Varian Semiconductor, it may need to acquire a license to or contest the validity of a competitors patent. Varian Semiconductor
cannot be certain that it could acquire such a license on commercially acceptable terms, if at all, or that it would prevail in such a proceeding. From time to time Varian Semiconductor has received notices from and has issued notices to such third
parties alleging infringement of patent and other intellectual property rights relating to its products. If Varian Semiconductor is subject to future claims of patent infringement, it may be required to make substantial settlement or damage payments
and may have to devote substantial resources to reengineering its products.

Varian Semiconductor depends on limited groups of suppliers or single
source suppliers, the loss of which could impair its ability to manufacture products and systems.

Varian Semiconductor obtains some of the components
and subassemblies included in its products from a limited group of suppliers, or in some cases a single source supplier. The loss of any supplier, including any single source supplier, would require obtaining one or more replacement suppliers and
may also require devoting significant resources to product development to incorporate new parts from other sources into Varian Semiconductors products. The need to change suppliers or to alternate between suppliers might cause delays in
delivery or significantly increase Varian Semiconductors costs. Although Varian Semiconductor has insurance to protect against loss due to business interruption from some sources as necessary, Varian Semiconductor cannot provide assurance that
such coverage will be adequate or that it will remain available on commercially acceptable terms. Although Varian Semiconductor seeks to reduce its dependence on these limited source suppliers, disruption or loss of these sources could negatively
impact its business and damage customer relationships.

Varian Semiconductors indemnification obligations under the Distribution Related
Agreements could be substantial, and Varian Semiconductor may not be fully indemnified in accordance with the Distribution Related Agreements for the expenses it incurs.

Under the terms of the Distribution Related Agreements, each of VMS, VI and Varian Semiconductor has agreed to indemnify the other parties, and certain related persons, from and after the spin-off with respect to
certain indebtedness, liabilities and obligations which could be significant. The availability of such indemnities will depend upon the future financial strength of the companies. There is a risk that one or more of these companies will not be able
to satisfy their indemnification obligations. In addition, the Distribution Related Agreements generally provide that if a court prohibits a company from satisfying its indemnification obligations, then such obligations will be shared equally by the
other companies.

Failure to comply with present or future environmental regulations could subject Varian Semiconductor to penalties and environmental
remediation costs.

Varian Semiconductor is subject to a variety of foreign, federal, state and local laws regulating the discharge of materials into
the environment and the protection of the environment. These regulations include discharges into the soil, water and air and the generation, handling, storage, and transportation and disposal of waste and hazardous substances. These laws increase
the costs and potential liabilities associated with the conduct of Varian Semiconductors operations.

VAI has been named by the U.S. Environmental
Protection Agency and third parties as a potentially responsible party under the Comprehensive Environmental Response Compensation and Liability Act of 1980, as amended (CERCLA), at eight sites where VAI is alleged to have shipped
manufacturing waste for recycling or disposal. VAI is also in various stages of environmental investigation and/or remediation under the direction of, or in consultation with foreign, federal, state and local agencies at certain current or former
VAI facilities. The Distribution Related Agreements provide that each of VMS, Varian Semiconductor and VI will indemnify the others for one-third of these environmental investigation and remediation costs, as adjusted for any insurance proceeds and
tax benefits expected to be realized upon payment of these costs.

For certain of these sites and facilities, various uncertainties make it difficult to
assess the likelihood and scope of further investigation or remediation activities or to estimate the future costs of such activities if undertaken. Varian Semiconductor has accrued estimated environmental investigation and remediation costs for
these sites and facilities. As to other sites and facilities, sufficient knowledge has been gained to be able to reasonably estimate the scope and costs of future environmental activities. As such, Varian Semiconductor has sufficient accruals to
cover Varian Semiconductors portion of these costs.



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Accrued amounts are only estimates of anticipated future environmental-related costs, and the amounts actually spent may
be greater than such estimates. Accordingly, Varian Semiconductor may need to make additional accruals and subsequent payments to cover its indemnification obligations that would exceed current estimates. In addition, Varian Semiconductors
present and past facilities have been in operation for many years, and over that time in the course of those operations, such facilities have used substances which are or might be considered hazardous. Varian Semiconductor also may have generated
and disposed of wastes which are or might be considered hazardous. Therefore, it is possible that additional environmental issues may arise in the future that Varian Semiconductor cannot now predict.

Varian Semiconductors ability to manage potential growth or decline, integration of potential acquisitions, and potential disposition of product lines and
technologies creates risks.

The cyclical nature of the semiconductor industry may cause Varian Semiconductor to experience rapid growth or decline in
demand for products and services. As a result, Varian Semiconductor may face significant challenges in maintaining adequate financial and business controls, management processes, information systems and procedures on a timely basis and training,
managing and appropriately sizing the work force. Current conditions in the semiconductor equipment industry challenge management to control spending on operating activities. There can be no assurance that Varian Semiconductor will be able to
perform such actions successfully.

An important element of Varian Semiconductors management strategy is to review acquisition prospects that would
complement existing products, augment market coverage and distribution ability, or enhance technological capabilities. In the future, Varian Semiconductor may make acquisitions of complementary companies, products or technologies, or may reduce or
dispose of certain product lines or technologies that no longer fit Varian Semiconductors long-term strategies. Managing an acquired business, disposing of product technologies or reducing personnel entails numerous operational and financial
risks, including difficulties in assimilating acquired operations and new personnel or separating existing business or product groups, diversion of managements attention to other business concerns, amortization of acquired intangible assets,
the incurrence of debt and contingent liabilities and potential loss of key employees or customers of acquired or disposed operations, among others. Varian Semiconductors success will depend, to a significant extent, on the ability of its
executive officers and other members of its senior management to identify and respond to these challenges effectively. In addition, any acquisitions could result in dilutive issuances of equity securities. There can be no assurance that Varian
Semiconductor will be able to achieve and manage successfully any such growth, decline, integration of potential acquisitions, disposition of product lines or technologies, or reduction in personnel, or that management, personnel or systems will be
adequate to support continued operations. Any such inabilities or inadequacies may have a material adverse effect on Varian Semiconductors business, operating results, financial condition, cash flows and/or the price of Varian Semiconductor
common stock.

Varian Semiconductor manufactures its products at one primary manufacturing facility and is thus subject to risk of disruption.

Varian Semiconductor has one primary manufacturing facility, located in Gloucester, Massachusetts, and its operations are subject to disruption for a
variety of reasons, including, but not limited to natural disasters, work stoppages, operational facility constraints and terrorism. Such disruption may cause delays in shipments of products to Varian Semiconductors customers and may result in
cancellation of orders or loss of customers and could seriously harm Varian Semiconductors business.

If Varian Semiconductor loses key employees
or is unable to attract and retain key employees, it may be unable to pursue business opportunities.

Varian Semiconductors future success depends
to a significant extent on the continued service of key managerial, technical and engineering personnel. Competition for such personnel is intense, particularly in the labor markets around Varian Semiconductors facilities in Massachusetts. The
available pool of qualified candidates is limited, and Varian Semiconductor may not be able to retain its key personnel or to attract, train, assimilate or retain other highly qualified engineers and technical and managerial personnel in the future.
The loss of these persons or Varian Semiconductors inability to hire, train or retrain qualified personnel could harm Varian Semiconductors business and results of operations.



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Varian Semiconductor has anti-takeover defenses that could delay or prevent an acquisition and could adversely affect
the price of its common stock.

Provisions of Varian Semiconductors certificate of incorporation and by-laws and of Delaware law could delay,
defer or prevent an acquisition or change in control of Varian Semiconductor or otherwise adversely affect the price of its common stock. For example, Varian Semiconductors Board of Directors is classified into three classes, and stockholders
do not have the right to call special meetings of stockholders. Varian Semiconductors certificate of incorporation also permits its Board of Directors to issue shares of preferred stock without stockholder approval. In addition to delaying or
preventing an acquisition, the issuance of a substantial number of preferred shares could adversely affect the price of the common stock. Varian Semiconductor has also adopted a stockholders rights plan which could significantly dilute the
equity interests of a person seeking to acquire control of Varian Semiconductor without the approval of the Board of Directors.

Varian Semiconductor
does not anticipate paying dividends on its common stock in the future.

Varian Semiconductor has not paid and does not anticipate paying dividends on
its common stock. Varian Semiconductors Board of Directors has discretion to make decisions to pay dividends to common stockholders in the future. The decision will depend on a number of factors, including results of operations, financial
conditions and contractual restrictions, that the Board, in its opinion, deems relevant.

Varian Semiconductors financial results may be adversely
impacted by higher than expected tax rates or exposure to additional income tax liabilities.

As a global company, Varian Semiconductors effective
tax rate is highly dependent upon the geographic composition of worldwide earnings and tax regulations governing each region. Varian Semiconductor is subject to income taxes in both the U.S. and various foreign jurisdictions, and significant
judgment is required to determine worldwide tax liabilities. Varian Semiconductors effective tax rate could be adversely affected by changes in the distribution of earnings between countries with differing statutory tax rates, in the valuation
of deferred tax assets, in tax laws or by material audit assessments, which could affect profitability. For example, recent U.S. legislation governing taxation of extraterritorial income repealed certain export subsidies that were prohibited by the
World Trade Organization and enacted different tax provisions. These new tax provisions are not expected to fully offset the loss of the repealed tax provisions and, as a result, Varian Semiconductors U.S. tax liability may increase. In
addition, Varian Semiconductors effective tax rate has benefited from the research and development (R & D) tax credit which expired on December 31, 2005. If the R & D credit is not extended, Varian
Semiconductors tax liability may increase. Further, the carrying value of deferred tax assets, which are predominantly in the U.S., is dependent on Varian Semiconductors ability to generate future taxable income in the U.S. In addition,
the amount of income taxes paid is subject to ongoing audits in various jurisdictions, and a material assessment by a governing tax authority could affect profitability.

Changes in accounting standards for stock-based compensation may adversely affect Varian Semiconductors operating results, stock price, and competitiveness in the employee marketplace.

The adoption of SFAS No. 123(R) requires Varian Semiconductor to expense all stock-based compensation provided to employees beginning with fiscal year 2006. The
environment for skilled employees that are knowledgeable about Varian Semiconductors products and services is a competitive one, and Varian Semiconductor believes that stock-based compensation is an important part of the overall compensation
offered to attract and retain such employees. SFAS No. 123(R) will decrease Varian Semiconductors earnings based on its measure of the value of stock-based compensation. There is some risk that the design of Varian
Semiconductors compensation plans could not balance profitability with employee retention objectives. Moreover, as Varian Semiconductor is adopting these rules before many of its peer companies, there may be, for some period of time, an
appearance that Varian Semiconductors earnings are lower than those of comparable companies that have not yet adopted SFAS No. 123(R), which could have a negative effect on Varian Semiconductors stock price.



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ITEM 2. UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS

The following table provides information about
purchases by Varian Semiconductor Equipment Associates, Inc. (Varian Semiconductor) during the quarter ended June 30, 2006 of equity securities that are registered by Varian Semiconductor pursuant to Section 12 of the
Securities Exchange Act of 1934:

ISSUER PURCHASES OF EQUITY SECURITIES



|                         |  |                                                 |  |                                            |       |                                                                                                     |           |                                                                                                                                                |   |       
|------------------------ |  | ----------------------------------------------- |  | ------------------------------------------ | ----- | --------------------------------------------------------------------------------------------------- | --------- | ---------------------------------------------------------------------------------------------------------------------------------------------- | - | ------
|Period                   |  | (a) Total Number of Shares (or Units) Purchased |  | (b) Average Price Paid per Share (or Unit) |       | (c) Total Number of Shares (or Units) Purchased as Part of Publicly Announced Plans or Programs (1) |           | (d) Maximum Number (or Approximate Dollar Value) of Shares (or Units) that May Yet Be Purchased Under the Plans or Programs (in thousands)
(2)
|April 1  April 28, 2006 |  | 0                                               |  | $                                          | 0     |                                                                                                     | 0         |                                                                                                                                                | $ | 79,960
|April 29  May 26, 2006  |  | 869,048                                         |  | $                                          | 30.02 |                                                                                                     | 869,048   |                                                                                                                                                | $ | 53,867
|May 27  June 30, 2006   |  | 254,867                                         |  | $                                          | 30.21 |                                                                                                     | 254,867   |                                                                                                                                                | $ | 46,167
|                         |  |                                                 |  |                                            |       |                                                                                                     |           |                                                                                                                                                |   |       
|Total: (3)               |  | 1,123,915                                       |  | $                                          | 30.07 |                                                                                                     | 1,123,915 |                                                                                                                                                | $ | 46,167
|                         |  |                                                 |  |                                            |       |                                                                                                     |           |                                                                                                                                                |   |       

---

|(1) | Varian Semiconductor repurchased an aggregate of 1,920,188 shares of its common stock pursuant to the repurchase program that was publicly announced on October 22, 2004 (the
Program).
|--- | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

|(2) | During the quarter ended June 30, 2006, Varian Semiconductor was authorized to expend up to $100,000,000 in repurchasing common stock under the Program. On August 1, 2006,
Varian Semiconductors Board of Directors amended the Program by increasing the amount of funds that may be expended in repurchasing common stock from $100,000,000 to $200,000,000. The program does not have a fixed expiration date.
|--- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

|(3) | In addition to the repurchases made during the quarter ended June 30, 2006, Varian Semiconductor has repurchased 1,203,622 shares at total cost of $33.3 million between
June 30, 2006 and August 4, 2006, the latest practicable date prior to the filing date.
|--- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

ITEM 3. DEFAULTS UPON SENIOR SECURITIES

None.

ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS

None.

ITEM 5. OTHER INFORMATION

None.

ITEM 6. EXHIBITS



| | 31.1 | Certification of the Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
| | ---- | -------------------------------------------------------------------------------------------------------



| | 31.2 | Certification of the Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
| | ---- | -------------------------------------------------------------------------------------------------------



| | 32.1 | Certification of the Chief Executive Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
| | ---- | ------------------------------------------------------------------------------------------------------------------------------------------------------



| | 32.2 | Certification of the Chief Financial Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
| | ---- | ------------------------------------------------------------------------------------------------------------------------------------------------------



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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the Registrant has duly caused this report
to be signed on its behalf by the undersigned thereunto duly authorized.



VARIAN SEMICONDUCTOR EQUIPMENT ASSOCIATES, INC.RegistrantBy:

/S/ Robert J. HallidayRobert J. HallidayExecutive Vice President, Treasurer and Chief
Financial Officer(Principal Financial Officer and Duly Authorized
Officer)


Date: August 7, 2006



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