# Patent

## Title
Adenoviral-mediated gene transfer to adipocytes

## Abstract

Funding for research supporting this invention was provided, in part, by the U.S. Department of Health and Human Services. The U.S. Government may have certain rights in this invention.

## Background
The present invention relates to enveloped, negative-sense, single-stranded RNA viruses and to the use of such viruses as live attenuated vaccines. Specifically, the invention relates to new human vaccines for enveloped viruses such as parainfluenza, respiratory syncytial virus, measles and influenza viruses, among others. The invention also relates to a method for screening such vaccines to ensure temperature sensitive attenuation prior to their administration and to check the stability of the attenuated strain after administration.

A number of viruses may cause severe infections in humans and animals. For example, respiratory syncytial virus (RSV) and parainfluenza virus are two of the leading causes of severe upper and/or lower respiratory tract disease in neonates and young infants. Other viruses, such as influenza virus, measles virus and human immunodeficiency virus, are also of significant concern.

A variety of vaccines have been developed over the years to prevent viral infections in animals and humans. Two principle types of vaccines have been used: killed viruses and attenuated live virus. A killed virus is typically inactivated by chemical or physical treatment, but is generally less effective in stimulating a lasting immune response than an attenuated live virus. Attenuated live viruses are typically more effective, but may revert back to their virulent state while in the body. The time and cost involved in developing either killed or live vaccines is significant.

Live, attenuated vaccines may be obtained directly from progeny viruses isolated from infected animals. For example, U.S. Pat. No. 3,927,209 to Straub discloses a parainfluenza type-3 vaccine isolated as a virus strain from a bovine respiratory tract. Live attenuated vaccines may also be obtained by repeatedly cold passaging a wild-type strain through suitable cultures until the virus has lost its original pathogenic properties. For example, cp45, a cold-adapted, temperature sensitive strain was obtained by passing the wild-type virus (JS strain) of HPIV-3 45 times at reduced temperatures. (Belshe and Hissom, 1982). The temperature sensitive cp45 strain is currently under evaluation for use as a candidate vaccine in humans. (Karron et al. 1995; Hall et al. 1993; Belshe et al. 1992; Clements et al. 1991; Crookshanks-Newman and Belshe 1986). Recent evaluation in children has revealed the cp45 strain to be highly attenuated and effective in stimulating immunogenic response. (Karron et al. 1995; Belshe et al. 1992).

Attenuation in a particular vaccine strain is commonly evaluated with respect to three phenotypes of the strain: cold adaptation, temperature sensitivity and plaque size or yield in tissue culture. Cold adaptation relates to the ability of the virus to grow at 20.degree. C. and the temperature sensitivity relates to whether such growth is inhibited at temperatures of around 40.degree. C. Plaque titers are an assay for quantitatively evaluating the extent of virus growth, and are commonly used to evaluate the extent of cold-adaptive and/or temperature sensitive phenotypes. Other methods for determining whether a vaccine is attenuated involve administering the vaccine to primates. For example, new polio vaccine lots are typically administered to monkeys before being approved for sale by the FDA.

A continuing need exists for developing new vaccines. The prior art methods of developing live attenuated vaccines by cold passaging, while often effective, are not predictable as to their success, and are necessarily limited to application against a single virus. A need also exists for alternative methods to determine whether a virus is sufficiently attenuated. Characterization of cold adaptive and temperature sensitive phenotypes are not definitive. Administration of vaccines to test animals are likewise not definitive, and are inefficient.

It is therefore an object of the invention to develop vaccines which are suitable for use against a variety of viruses. It is a further object of the invention to make such vaccines using genetic engineering technology. It is likewise an object to more specifically determine whether a virus strain is attenuated.

Briefly, therefore, the present invention is directed to a live, attenuated vaccine, suitable for use in humans or animals. The vaccine comprises an enveloped, negative-sense, single-stranded RNA virus. The virus has a genome which includes a nucleic acid sequence that encodes at least one surface antigen of a target virus and a nucleic acid sequence which encodes a variant protein which is a HPIV-3 L protein that is different in amino acid sequence from the L protein of wild-type HPIV-3. The surface antigen of the target virus is different from the surface antigens of cp45. The vaccine also comprises a pharmaceutically appropriate carrier.

The present invention is likewise directed to a vaccine which comprises an enveloped, negative-sense, single-stranded RNA virus, where the virus has a genome which comprises, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of the cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, NP!, of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P+C!, of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, M!, of cp45; (v) a nucleic acid sequence which encodes at least one surface protein of a target virus; and (vi) a nucleic acid sequence which encodes a variant protein which differs in amino acid sequence from the L protein of wild-type HPIV-3. The target virus is either HPIV-1, HPIV-2 or RSV and the surface protein of the target virus is different from the surface proteins of cp45. The variant protein has at least two variations in amino acid sequence relative to the wild-type HPIV-3 L protein: His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1. The vaccine also includes a pharmaceutically appropriate carrier.

The invention is directed as well to a cp-45 hybrid virus which is suitable for use as a vaccine in humans or animals. The virus comprising an enveloped, negative-sense, single-stranded chimeric RNA genome, which includes, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, NP!, of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P+C!, of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, M!, of cp45; (v) a nucleic acid sequence which encodes at least one surface antigen of a target virus; and (vi) a nucleic acid sequence which encodes a variant protein which is different from the L protein of wild-type HPIV-3. The surface antigen of the target virus is different from the surface antigens of cp45.

The invention is directed, moreover, to a method for producing an enveloped, negative-sense, single-stranded RNA virus suitable for use as a live, attenuated human or animal vaccine. A host cell is transfected with a plasmid vector that comprises a chimeric genome. The genome includes a nucleic acid sequence which encodes at least one surface antigen of a target virus and a nucleic acid sequence which encodes a variant protein, the variant protein being a HPIV-3 L protein which is different from the L protein of wild-type HPIV-3. The surface antigen of the target virus is different from the surface antigens of cp45. The host cell is cotransfected with plasmid vectors that express HPIV-3 NP, P and L proteins. The cotransfected host cell is incubated to produce a cp-45 hybrid virus and the hybrid virus is isolated in a pharmaceutically acceptable carrier to form a vaccine.

The invention is similarly directed to a plasmid vector comprising a chimeric RNA genome. The positive-sense or negative-sense RNA genome includes a nucleic acid sequence which encodes at least one surface antigen of a target virus, the surface antigens being different from the surface antigens of cp45, and a nucleic acid sequence which encodes a variant protein, the variant protein being a HPIV-3 L protein which is different from the L protein of wild-type HPIV-3.

The invention is furthermore directed to a method for determining whether a HPIV-3 or a cp45-hybrid virus is attenuated. The method comprises confirming the presence of at least one variation in the genome of the virus relative to the genome of wild-type HPIV-3. The variation is in the region of the genome which encodes the L protein.

The present invention is also directed to a method for determining whether a virus has a temperature sensitive phenotype. A sample of HPIV-3 or a cp45-hybrid virus is obtained and a first plaque assay is performed. A host cell is transfected with a plasmid vector that expresses wild-type HPIV-3 L protein and infected with the virus. After incubating, a second plaque assay is performed and compared to the first plaque assay.

The invention offers new opportunities for producing live vaccines which can be used in conjunction with a variety of viruses. Because the vaccines of the present invention will have the same temperature sensitive phenotype as exhibited by cp45, such vaccines will be attenuated during use in humans. Furthermore, the invention provides a direct and efficient method for determining temperature sensitive phenotype and attenuation in HPIV-3 viruses and in cp45 hybrid viruses.

Other features and objects of the present invention will be in part apparent to those skilled in the art and in part pointed out hereinafter.

FIG. 1 is a schematic representation of the HPIV-3 viral genome, shown vertically 5' (top) to 3' (bottom) in its cDNA sense. The position number for nucleotide changes in the leader region correspond to their position in relation to the genome, whereas all other position numbers refer to the position of nucleotide changes within the individual gene.

FIGS. 2(a) and 2(b) depict the results of Southern hybridization or southern blot analysis, comparing mRNA levels of P protein gene between cp45 and wild-type HPIV-3. FIG. 2(a) shows cDNA after 15 cycles of PCR amplification from wild-type HPIV-3 (lane 1), cp45 (lane 2) and plasmid DNA containing the P gene (lane 3). FIG. 2(b) depicts the results of a slot blot hybridization analysis using phosphorImaging.

FIGS. 3(a) and 3(b) depict the results of a pulse-chase experiment, demonstrating the kinetics of viral protein synthesis. FIG. 3(a) shows cell lysates immunoprecipitated with Rabbit anti-HPIV-3, and FIG. 3(b) shows cell lysates immunoprecipitated with pooled monoclonal antibodies to HN and NP of wild-type HPIV-3.

FIGS. 4(a) and 4(b) show the reactivities of cp45 and wild-type HPIV-3 with monoclonal antibodies to HN protein (FIG. 4(a)) and to F protein (FIG. 4(b)), as determined by ELISA.

FIGS. 5(a) and 5(b) depict the immunoprecipitation of HPIV-3 proteins expressed by the vaccinia virus T7 system with rabbit antiserum (FIG. 5(a)) and with monoclonal antibodies (FIG. 5(b)).

FIGS. 6(a) through 6(d) depict cells which have expressed HPIV-3 NP protein (FIG. 6(a)), P protein (FIG. 6(b)) or L protein (FIG. 6(c)), and shows their growth relative to a negative control (FIG. 4(d)).

As used herein, the term "HPIV-3" includes all HPIV-3 strains, including wild-type HPIV-3 and attenuated strains such as cp45. "Wild-type HPIV-3" refers to HPIV-3 (JS) strain. (Belshe and Hissom 1982). The term "cp45 " refers to the attenuated, temperature sensitive cp45 strain of wild-type HPIV-3.

The present invention is based upon the observation that the temperature sensitive phenotype of the cp45 strain of HPIV-3 is caused by a mutation in the large, or L, gene of cp45 relative to the corresponding gene in the wild-type strain. Without being bound by any theory, the L gene is believed to encode the RNA-dependent RNA polymerase of HPIV-3 and the temperature sensitive phenotype is believed to arise due to a decrease in the polymerase activity at higher temperatures, generally greater than or equal to about 37.degree. C. Such decreased polymerase activity results in reduced transcription of the viral RNA. Hence, it is now understood that a significant level of attenuation in the cp45 strain of HPIV-3 is associated with the mutant L gene. Specifically, it is believed that higher temperatures result in cellular pH changes which cause conformational changes in the mutant RNA-dependent RNA polymerase, and such conformational changes decrease its activity, which in turn results in reduced replication of the virus. The wild-type RNA-dependent RNA polymerase does not appear to undergo such temperature sensitive conformational changes.

The correlation of the temperature sensitive phenotype of cp45 to its L gene enables several practical applications. For example, it is now possible to create new vaccines directed at viruses other than HPIV-3 by combining, through genetic engineering methods, the region of the cp45 viral genome which encodes proteins responsible for replication and internal structure with the region of the genome of the target virus which encodes proteins responsible for attachment, penetration and release of the virus and virus progeny, respectfully. Moreover, it is possible to determine whether an HPIV-3 strain, or a hybrid virus strain made by the aforementioned method, is attenuated by confirming the presence or absence of mutations in its L gene. A verification of attenuation is desirable before administration as a check of new vaccine lots and also after such administration to ensure the stability (i.e., non-reversion) of the vaccine virus.

HPIV-3 is an enveloped, negative-sense, single-stranded RNA virus. Its viral genome encodes at least six structural proteins, including, in succession from the 3' end: 3'-NP-P(+C)-M-F-HN-L-5'!, wherein 3' refers to the 3' leader region of the genome and wherein NP, P(+C), M, F, HN, and L refer to the regions of the genome which encode the nucleocapsid protein, the phosphoprotein, the matrix protein, the fusion protein, the hemagglutinin-neuraminidase protein, and the large protein, respectively. (Spriggs and Collins 1986; Storey et al 1984). Relatively short, non-coding intergenic regions separate each of the regions encoding functional proteins.

The nucleocapsid protein, NP, is the most abundant structural protein. It encapsidates the genomic RNA and is believed to maintain the structural integrity and template function of the genome. The L protein functions as the RNA-dependent RNA polymerase, and the P protein functions as an auxiliary regulatory protein which supports the function of L. The P(C+) gene also contains a (C+) reading frame. The matrix, fusion, and hemagglutinin-neuraminidase proteins, M, F and HN, respectively, collectively form the lipid envelope which surrounds the nucleocapsid core. M forms the structural internal portion of the envelope, while F and HN are surface glycoproteins. The H portion of the HN protein and the F protein are responsible for attachment onto and penetration into a host cell by HPIV-3, while the N portion of the HN protein is responsible for release of the progeny viruses from the host cell after replication.

During reproduction of paramyxoviruses such as HPIV-3 in the cytoplasm of infected cells, the nucleocapsid (RNA-NP) serves as a template for transcription by the viral RNA polymerase, L. L and P proteins are both associated with the RNA-NP core, and during primary transcription, the L-P complex interacts with the nucleocapsid core to transcribe the genomic RNA into individual mRNAs which code for viral proteins. In addition, during replication in an infected cell, NP may form a soluble complex with P. This complex is thought to interact with transcribing nucleocapsid complexes to switch from primary transcription to replication of the viral RNA.

The complete nucleic acid sequences of the wild-type HPIV-3 genome and of the temperature sensitive cp45 genome are known and have been compared. (Stokes et al. 1993; Galinski et al. 1988; Galinski et al. 1986; Galinski et al. 1986'; Spriggs and Collins 1986; Spriggs and Collins 1986'; Storey et al. 1984). The known amino acid sequences of the L protein of wild-type HPIV-3 (JS) strain and of cp45 are shown herein as SEQ ID NO:1 and SEQ ID NO:2, respectively. At least 18 nucleotide differences exist between wild-type HPIV-3 genome and the cp45 genome, as shown in FIG. 1. However, nine of these 18 nucleotide changes are found in non-attenuated strains or do not result in amino acid changes in the proteins which they encode. Two of the remaining changes are in the non-coding 3' leader region, but may be important for regulation. Hence, at least seven remaining nucleotide differences between the cp45 genome and the wild-type genome are known to result in amino acid sequence changes in four variant proteins: M, F, HN and L. The changes in amino acid sequences of the variant cp45 proteins relative to the corresponding wild-type proteins include: in the M gene, substituting threonine (Thr) for proline (Pro) at residue 199; in the F gene, substituting valine (Val) for isoleucine (Ile) at residue 420 and threonine (Thr) for alanine (Ala) at residue 450; in the HN gene, substituting alanine for valine at residue 384; and in the L gene, substituting histidine (His) for tyrosine (Tyr) at residue 942, of SEQ ID NO:1 phenylalanine (Phe) for leucine (Leu) at residue 992 of SEQ ID NO:1 and isoleucine (Ile) for threonine (Thr) at residue 1558 of SEQ ID NO:1.

The variations in the region of the wild-type HPIV-3 genome which encodes the L protein are now understood to directly correlate to the temperature sensitive phenotype of the cp45 strain. Specifically, the variant L protein has been linked to decreased transcription of the cp45 virus at non-permissive temperatures. Some reduction in transcriptional activity is observed beginning at about 37.degree. C., and a marked reduction occurs at or above about 38.degree. C. Hence, the non-permissive temperatures for cp45 are considered to be temperatures greater than about 37.degree. C., and generally ranging from about 37.degree. C. to about 40.degree. C.

Without being bound by theory, the His and Phe substitutions in the L protein, at residues 942 and 992, SEQ ID NO:1, respectively, are believed to be important contributors to the presence of the temperature sensitive phenotype. Histidine-phenylalanine interactions are pH dependent, and intracellular pH changes are affected by temperature. A shift to the higher non-permissive temperatures and a corresponding change in pH results in histidine-phenylalanine interactions which cause conformational changes in the RNA dependent RNA polymerase (L protein). Such conformational changes, in turn, result in a decreased activity of the polymerase and a corresponding decrease in transcription and replication. The wild-type RNA-dependent RNA polymerase is not believed to undergo such temperature sensitive conformational changes.

The temperature-dependent replication of the cp45 strain clearly contributes to the observed attenuation in the cp45 vaccine. As shown in Table 1, replication of the temperature sensitive cp45 strain is reduced by a factor of about 10.sup.6 as compared to replication of the wild-type ("WT") strain. (See Example 1). Referring again to Table 1, cp45 showed some replication upon shifting the incubation temperature from 39.5.degree. C. to 32.degree. C. after 24 hours at the higher temperature, and hence demonstrated the characteristic temperature-sensitive phenotype. The poor transcriptional activity of the cp45 virus strain results in markedly reduced mRNA synthesis at 39.5.degree. C., and as a result, protein synthesis and virus growth are significantly affected. (See Example 1). Other factors also contribute to attenuation, but to a relatively minor extent. For example, as shown in Table 2, a decrease in neuraminidase activity also results during a shift to higher temperatures. (See Example 2). However, while the decrease in neuraminidase activity likely restricts the release of the progeny virus particles from the infected cell surface, the decrease in activity by a factor of less than 10 suggests that it is not the major factor in the observed attenuation of cp45. Nucleotide changes in the 3' leader region of cp45 relative to the wild-type strain are also suspected of affecting the cold adaptive, temperature sensitivity and/or attenuation properties of cp45. ______________________________________ Comparison of yields of cp45 and parent wild-type (WT) viruses in a temperature-shift experiment Virus Strain Incubation Temp (.degree.C.) Virus yield.sup.a ______________________________________ cp45         32            2.9 .times. 10.sup.7 WT           32            1 .times. 10.sup.7 cp45         39.5          1.2 .times. 10 WT           39.5          8 .times. 10.sup.6 cp45         39.5 .fwdarw.32.sup.b 2 .times. 10.sup.3 WT           39.5 .fwdarw.32.sup.b 1.5 .times. 10.sup.7 ______________________________________ .sup.a Virus yields in L132 cells, infected at similar multiplicities of infection, are expressed after 48 h of incubation. .sup.b Temperature shift. ______________________________________ Comparison of neuraminidase activities of cp45 and parent wild-type (WT) viruses HA Virus  Incubation units   Neuraminidase activity with.sup.a : strain temp (.degree.C.) used    Fetuin  Neuraminlactose ______________________________________ WT     39.5        512    0.24    3.60 cp45   39.5        512    0.03    0.83 WT     32         2,048   1.11    2.30 cp45   32         2,048   0.67    2.30 ______________________________________ .sup.a Results are presented as optical density values at 549 nm.

Although the transcriptional activity of cp45 is reduced relative to wild-type HPIV-3, other biological properties were not significantly altered. The antigenic sites of the envelope glycoproteins, defined by reactivity to a panel of monoclonal antibodies remained unaffected in cp45 as compared to the wild-type strain. (See Example 3). Similarly, transport of HN and F glycoproteins to the cell surface, and functional activity of HN, as determined by an HA assay test, demonstrated no substantial differences between the properties of the cp45 strain relative to the wild-type strain. (See Example 3). Further, limited viral morphogenesis occurred at the nonpermissive temperature.

The temperature dependent activity of the cp45 RNA-dependent RNA polymerase (L protein) and the corresponding reduced transcription of cp45 at non-permissive temperatures (about 40.degree. C.) is associated with variations in the region of the viral genome which encodes the L protein. Whereas a cell infected with cp45 alone does not replicate significantly, cells which were co-transfected with cp45 and a recombinant DNA vector which expressed wild-type L protein showed significant levels of replication. (See Examples 4 and 5).

Table 3 reports virus replication yields of plaque assays done on L-132 cells. Briefly, CV-1 cells were cotransfected with plasmid DNA (pRSV-T) encoding the SV40 large T antigen and the recombinant plasmid DNAs (L, P, and/or NP). The CV-1 cells were then infected with cp45 virus at 20 hours posttransfection and incubated at 39.5.degree. C. for 28 hours.

As shown in Table 3, when the temperature sensitive cp45 strain is complemented by non-mutant wild-type L protein in a complementation assay, the level of replication, as measured by plaque assay methods, increased by a factor of more than 100 relative to the uncomplemented cp45. In contrast, complementation of the cp45 strain with wild-type P protein or with wild-type NP protein had no effect on replication. Cells cotransfected with cp45 and with wild-type L and P proteins, or with wild-type L, P and NP proteins, showed similar increases in yield over cells cotransfected with cp45 and wild-type L protein alone, thereby indicating the key role of the L protein. The recovery of cp45 replication at higher, non-permissive temperatures by complementing the cp45 strain with wild-type L protein demonstrates that the variant L protein (RNA-dependent RNA polymerase) is responsible for the temperature sensitive phenotype of cp45. ______________________________________ Complementation assay for recovery of cp45 virus at the nonpermissive temperature (39.5.degree. C.) Gene(s) used in Virus recovery titer (PFU/ml complementation.sup.a of culture medium) at 32.degree. C..sup.b ______________________________________ None         <1.0 L, P, and NP 2.3 .times. 10.sup.3 L and P      1.9 .times. 10.sup.2 L            3.3 .times. 10.sup.2 P            <1.0 NP           <1.0 ______________________________________

Importantly, cp45 progeny virus produced from co-transfected cells in which wild-type L protein was used to complement the cp45 strain at non-permissive temperatures retained the temperature sensitive phenotype of the parent cp45 strain. (See Example 6). Further, the L protein complementation of cp45 is heterotypically exclusive. (See Example 6).

The observation that the temperature sensitive phenotype and the associated attenuation of the cp45 strain of HPIV-3 is caused by a variation in the L gene of cp45 enables a method for producing vaccines for other viruses, such other viruses referred to herein as target viruses. Target viruses include any enveloped virus that has one or more surface antigen. Surface antigens include surface proteins and/or surface glycoproteins. As used herein, the term surface antigen refers to proteins, such as glycoproteins, and other moieties which are responsible for the attachment of the viruses onto host cells, which allow the viruses to penetrate into the host cells to establish infection, and/or which facilitate release of progeny virus from the infected host cells.

Hence, in addition to related enveloped, negative-sense, single-stranded RNA viruses such as human parainfluenza virus type 1 (HPIV-1), human parainfluenza virus type 2 (HPIV-2), respiratory syncytial virus (RSV), human influenza virus type A, human influenza virus type B, and measles viruses, target viruses would also include other enveloped viruses, such as paramyxoviruses, orthomyxoviruses, retroviruses (e.g. human immunodeficiency viruses HIV-GP120 and HIV-GP41), arenaviruses, coronaviruses, bunyaviruses, rhabdoviruses, togaviruses, herpesviruses, poxviruses and hepadnaviruses. Preferable target viruses include enveloped viruses which reproduce in the cytoplasm. The target virus of the present invention may be specific to humans, specific to animals or common to both animals and humans. Bovine RSV and cattle HPIV-3 (shipping fever virus) are typical animal viruses included within the scope of the present invention.

The gene sequence which encodes the surface glycoproteins of a target virus may be substituted for the corresponding sequence in the cp45 genome which codes for the HN and F proteins, to result in a hybrid virus. That is, the region of the genome of the target virus that encodes one or more surface glycoproteins may be combined with the regions of the cp45 genome related to replication and internal structure of the virus. The resulting hybrid virus will have the temperature sensitive attenuation properties contributed by the cp45 genome and the virus-specific antigenic properties of the virus from which the surface glycoproteins are contributed. As such, the hybrid virus should have a predictable level of safety and immunogenicity and be suitable for use as a vaccine in humans.

A vaccine developed from cp45 in combination with a target wild-type virus would comprise an enveloped, negative-sense, single-stranded RNA hybrid virus. A preferred hybrid virus would have a chimeric genome which comprises, in succession from its 3' end: a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of a cp45 viral genome; nucleic acid sequences which encode the nucleocapsid protein, NP!, the phosphoprotein, P+C!, and the matrix protein, M!, of cp45; a nucleic acid sequence which encodes at least one surface antigen (e.g. surface protein or surface glycoprotein) of an enveloped target virus, and a nucleic acid sequence which encodes a variant protein which is different from the L protein of wild-type HPIV-3.

An alternative, but presently less preferred hybrid virus would have a genome which includes a 3' leader region, a NP region, a P+C! region and a M region, where one or more of these regions are the same as the corresponding regions of the wild-type HPIV-3 strain. The genome of such a hybrid virus would also include a region encoding the surface glycoproteins of the target virus and a region which encodes a variant of the wild-type L protein. Because such a hybrid virus would differ from wild-type HPIV-3 only with respect to its gene encoding surface glycoproteins and its L gene, the possibility for reversion to a non-attenuated strain is higher than if the genome of the hybrid virus more closely resembles the cp45 genome in the regions encoding the NP, P+C! and M proteins and in the 3' leader region.

In addition to an attenuated hybrid virus, the vaccine of the present invention also comprises a pharmaceutically appropriate carrier for the attenuated hybrid virus. Typical carriers include the tissue culture fluid in which the virus is grown, dilutents such as phosphate-buffered saline and/or stabilizers such as gelatin.

The variant protein preferably has at least one or more variations in amino acid sequence relative to the wild-type protein. The variations in amino acids preferably include substitution of His for Tyr at residue 942, of SEQ ID NO:1, Phe for Leu at residue 992 of SEQ ID NO:1 and Ile for Thr at residue 1558 of SEQ ID NO:1. More preferably, the variant protein has at least two variations in amino acid sequence relative to the wild-type HPIV-3 L protein: a substitution of His for Tyr at residue 942 of SEQ ID NO:1 and a substitution of Phe for Leu at residue 992 of SEQ ID NO:1. The variant protein most preferably has all three of the variations in amino acid sequence of the cp45 L protein, and may include other variations as well.

The method for producing an attenuated hybrid virus suitable for use as a human vaccine against a target wild-type virus includes genetic engineering techniques applied to insert target gene sequences encoding target surface glycoproteins into the cp45 genome in place of the corresponding surface glycoprotein genes in the cp45 genome. The method detailed below is a preferred method. However, those skilled in the art will appreciate that variations in this method and other methods are also suitable to produce a hybrid virus. Example 7 details methods for producing attenuated hybrid vaccines for target viruses HPIV-1, HPIV-2, RSV, influenza viruses and measles viruses.

To produce a cp45 hybrid virus, the viral genome of cp45 is first converted into full-length cDNA clone. Typically, several different portions of the genome are amplified using PCR and ligated in successive steps into a full length cDNA clone. The regions of the target virus genome encoding the target's surface glycoproteins are also converted into a cDNA clone. Target viruses having negative-sense or positive-sense, single-stranded RNA genomes, such as HPIV-1, HPIV-2, RSV, measles and influenza viruses, are converted in the same manner as cp45. Viruses with DNA genomes can be directly ligated into the DNA plasmid vector.

The cDNA clone of the cp45 genome is then incorporated into a plasmid vector. Plasmid vectors such as pBluescriptII (Stratagene) or other commercially available vectors which are suitable for subsequent transfection and expression in a mammalian host cell may be used. Briefly, the cDNA clone and plasmid vector are combined using restriction enzyme digestion and ligation reactions. The recombinant plasmid is then cloned and purified.

Genetic manipulations are conducted to replace the regions of the cp45 cDNA genome which encode the F and HN proteins with the cDNA copy of the target virus' genes which encode the target's one or more surface glycoproteins.

The negative-sense, single-stranded RNA hybrid virus is then recovered from the cDNA genome by transfecting the hybrid cDNA plasmid vector into mammalian cells for synthesis of progeny viral genome and viral proteins using reverse genetic techniques. (Palese 1995; Lawson et al. 1995; Schnell et al. 1994). Briefly, the plasmid vector containing the cDNA copies are transfected into a host cell which has been previously infected with a recombinant vaccinia virus expressing bacteriophage T7 RNA polymerase. Plasmid vectors that express HPIV-3 NP, P and L proteins, produced according to the method described in Example 4, are cotransfected into the host cell. The cDNA is transcribed to produce full-length, negative-sense (genomic) RNA. Expression of the NP, L and P proteins facilitate synthesis of progeny hybrid virus. The hybrid virions are then isolated, grown in appropriate mammalian cells and tested to verify temperature sensitive phenotype and associated attenuation.

The observation that the temperature sensitive phenotype and the associated attenuation of the cp45 strain of HPIV-3 is caused by a variation in the L gene of cp45 also enables a method for determining whether a HPIV-3 strain is attenuated. Such a determination is made by confirming the presence of at least one variation in the region of the HPIV-3 strain genome encoding the L protein relative to the corresponding region of the genome of wild-type HPIV-3. A determination can, in the same manner, also be made as to whether a cp45-hybrid virus is attenuated.

Verification of attenuation is necessary in a variety of situations. For example, verification is useful in research laboratories, as quality control checks in commercial production of vaccines, as verification by regulatory agencies, and as final checks on new vaccine lots before administration to a patient. Verification of attenuation is likewise useful to check the stability of a vaccine after it has been administered to a patient. Isolates from the patient may be checked to verify that the progeny virus have retained the temperature sensitive attenuated phenotype.

A variety of methods for confirming the presence of nucleotide variations are known in the art. For example, while cumbersome, the genome which encodes the L protein could be sequenced in its entirety and compared to the wild-type gene for L. Alternatively, where the viral strain being tested is cp45 or a cp45 hybrid virus, the L gene could be cut with restriction enzymes near the expected variations at residues 942, 992 and 1558, and the smaller fragments could be sequenced for comparison with the L gene of wild-type HPIV-3 or of cp45. A more preferred method would include isolating the viral strain being tested in single-stranded form, hybridizing the viral genome to probes which flank the variations, amplifying the region between the probes using PCR and sequencing the amplified regions of the L gene for comparison to wild-type HPIV-3 or to cp45. Other alternatives for determining point variations in gene sequences, such as single nucleotide extension reactions (Kuppuswamy et al. 1991) are also known in the art.

The complementation assay of the present invention, described in detail in Examples 3 and 4, may also be used to confirm the presence of at least one variation in the L gene. This method not only verifies gene sequence variation, but also simultaneously verifies the functional effect of such variations in the L gene. The dual nature of such a test is advantageous over sequencing information alone, due to the possibility of suppressor mutations.

Briefly, a viral strain sample is obtained from a new vaccine lot or as a purified patient isolate. If necessary, the sample is amplified by growing in a cell culture medium. A standard, first plaque assay is performed, as a control, by incubating at a non-permissive temperature (about 40.degree. C.), and measuring replication. A complementation assay is then performed in which host cells are transfected with a plasmid vector that expresses wild-type HPIV-3 L protein and are also infected with the viral sample. (See Examples 3 and 4). Plasmid vectors which express wild-type NP and/or P proteins may be cotransfected into the host cells. A second plaque assay is performed on the complemented viral sample, and the results are compared to the results of the first plaque assay. A variation in the sample virus's L gene will be indicated by a significant increase, preferably at least a 10 fold increase, and most preferably a 100 fold increase, in replication of the complemented viral sample as compared to the non-complemented sample, as measured by plaque assays.

The following examples illustrate the principles and advantages of the invention.

As used in the following examples, cp45 was derived from wild-type HPIV-3 (JS strain), an isolate originally cultured from a child with febrile respiratory disease. A cold-adapted mutant was selected after serial passage of the virus 45 times at 20.degree. C. and isolated by plaque purification (Belshe and Hissom 1982). The cp45 virus was subsequently grown at 32.degree. C. in continuous cell lines. cp45

Unlike the wild-type HPIV-3 strain, the cp45 strain loses its replication ability at non-permissive higher temperatures (above about 37.degree. C.). This loss of replication activity contributes to the observed attenuation in the cp45 vaccine. Moreover, a related decrease in virus-specific mRNA synthesis and in protein synthesis exists in the cp45 strain relative to the wild-type strain.

cp45 virus was absorbed into a cellular culture medium at 32.degree. C. for 1 hour and grown at 39.5.degree. C. for 24 hours. Infected cells were then shifted to 32.degree. C. for growth for an additional 24 hours. The virus titer in the culture supernatant was determined by plaque assay in L-132 cells. Infected cell monolayers were either stained with hematoxylin-eosin Y or overlaid with 0.9% agar and 0.005% neutral red for visualization of viral plaques. The results from at least three independent experiments showed consistent virus recovery (less than fivefold variation).

Comparison of cp45 and wild-type (JS) virus replication in L-132 cells at permissive (32.degree. C.) and nonpermissive (39.5.degree. C.) temperatures in a temperature-shift assay is shown in Table 1. Normal growth of both viruses was observed at the permissive temperature. However, poor replication (reduction of .about.10.sup.6 -fold) of cp45 was observed when the virus was absorbed on L-132 cells at 39.5.degree. C. and incubated at the same temperature. However, the virus showed some replication upon changing the incubation temperature from 39.5.degree. to 32.degree. C. after 24 h. On the other hand, the wild-type virus exhibited similar replication at 39.5.degree. and 32.degree. C. cp45 virus replicated upon temperature shift from 39.5.degree. to 32.degree. C. demonstrated the characteristic temperature-sensitive phenotype, thereby indicating an absence of the revertant virus at 39.5.degree. or 32.degree. C.

The virus-specific RNA synthesis occurring in the cp45 strain is likewise significantly lower than such synthesis in the wild-type strain. Hence, only low levels of messenger RNA (mRNA) are produced at the non-permissive temperature. In order to determine the overall viral transcriptional activity at the nonpermissive temperature, mRNA synthesis from the P protein gene of cp45 virus was studied by reverse transcription-PCR for comparison with that of the wild-type virus.

Briefly, L-132 cells were infected with cp45 or wild-type virus at a similar multiplicity of infection. After virus absorption at 32.degree. C., cells were grown at 39.5.degree. C. for 24 h. Infected cells were treated with actinomycin D (10 .mu.g/ml) for 14 h, and RNA was prepared by acid guanidinium thiocyanate-phenol-chloroform extraction. Amplification of the P mRNA was done by reverse transcription-PCR from the same quantities of total RNA (10 .mu.g) and virus-specific sense (CCAACAACAACTCCCAGATC, nucleotide positions 2740 to 2759) and anti-sense (TGCCTCCATAAGTGGGTCAA, nucleotide positions 3280 to 3299) synthetic oligonucleotide primers. The amplification reaction was performed by using an automatic thermocycler (Perkin-Elmer Cetus), with cycling parameters of denaturation at 94.degree. C. for 1 min, primer annealing at 50.degree. C. for 1.5 min, and primer extension at 72.degree. C. for 2 min. As an internal standard, amplification of the actin mRNA was similarly done by reverse transcription-PCR by using the same RNA preparations and .beta.-actin gene-specific sense (GCATGGAGTCCTGTGGCATCCACG, nucleotide positions 2563 to 2586) and anti-sense (CTAGAAGCATTTGCGGTGGACGAT, nucleotide positions 2977 to 3000) primers. A plasmid DNA containing the P protein gene of HPIV-3, kindly provided by Mark S. Galinski (The Cleveland Clinic Foundation, Cleveland, Ohio), was also used as a positive control in the PCR amplification. A PCR-amplified .about.559 bp fragment from the P protein gene plasmid DNA was isolated by electrophoresis in a 0.8% agarose gel. The DNA band was excised, eluted by using an ultrafree MC column (Millipore Corporation, Bedford, Mass.), and radiolabeled with .alpha.-.sup.32 P!dCTP by the random primed oligonucleotide labeling method by using a commercially available kit (Boehringer Mannheim Biochemicals, Indianapolis, Ind.), for use as a probe. An actin probe was similarly prepared for use in Southern hybridization.

mRNA synthesis was tested by comparing the levels of message between the two RNA preparations in a parallel experiment. The reaction products from different cycles PCR amplification were analyzed by agarose gel electrophoresis followed by ethidium bromide staining and showed a significant difference in the levels of message generated from cp45 and wild-type virus. On the other hand, similar message levels of the actin gene, studied as an internal control, was observed for the RNA isolated from cp45 and wild-type virus-infected cells. A similar observation was noted following Southern hybridization of the electrophoresed DNA. The typical amplification profile of the PCR products from viral mRNA is shown in FIG. 2(a). A semiquantitative approach was taken for the estimation of the differences between these messages by slot blot hybridization with fourfold dilutions of a single cDNA sample. A representative example of the results, shown in FIG. 2(b), further indicates differences in the message of the P gene from cp45 and wild-type virus-infected cells at 15 and 20 cycles of PCR amplification. Message from the P protein gene of cp45 virus was estimated to be approximately 17% of that of wild-type virus by PhosphorImaging analysis.

Protein synthesis at the higher non-permissive temperature was also significantly lower in the cp45 strain as compared to the wild-type strain. cp45 virus polypeptide synthesis was analyzed by a pulse-chase experiment followed by immunoprecipitation with a hyperimmune rabbit antiserum to HPIV-3 or monoclonal antibodies to HN and NP.

Briefly, virus-infected cells were grown at 39.5.degree. or 32.degree. C. for 24 h and pulsed with .sup.35 S-protein label (Amersham Corporation, Arlington Heights, Ill.) for 1 h. Labeled cell lysates were immunoprecipitated after a chase of 0, 1, 2, 3, and 4 h with hyperimmune rabbit antiserum to HPIV-3 or with a pool of anti-HN and anti-NP monoclonal antibodies. Immunoprecipitates were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, followed by autoradiography.

The results show a major difference in the synthesis of viral proteins between the wild-type and cp45 virus. Synthesis of wild-type virus polypeptides during the pulse period was not processed or modified further during the 4-h chase period (FIG. 3). On the other hand, cp45 virus polypeptide synthesis appeared to be extremely weak or almost undetectable. However, synthesis of cp45 and wild-type virus polypeptides was found to be similar when cells were grown at 32.degree. C.

cp45 virus was grown on L-132 cells at 32.degree. or 39.5.degree. C., and the virus-infected cell homogenate was analyzed for neuraminidase activities. The cp45 strain demonstrated a reduced neuraminidase activity of cp45 virus at the nonpermissive temperature higher temperature. Such a decrease in activity may inhibit the release of progeny virus particles from an infected cell surface.

Briefly, 100 .mu.l of 0.2M sodium acetate buffer (pH 5.5) was mixed with an equal volume of infected cell homogenate with a known number of HA units. Then, 0.1 ml of bovine fetuin (15 mg/ml, type IV; Sigma Chemical Company, St. Louis, Mo.) dissolved in the same buffer was added to the reaction mixture, and the mixture was incubated at 37.degree. C. overnight. The amount of released neuraminic acid in the reaction mixture was determined. Wild-type parent virus was also included in this study for comparison.

The neuraminidase property of the cp45 virus incubated at the nonpermissive temperature when tested with two different molecular-size substrates showed lower activity, by a factor ranging from about 4 to about 10, than cells infected with the wild-type virus (Table 2).

Antigenic relatedness of cp45 and the wild-type parent virus strain was initially compared by hemagglutination (HA) inhibition and neutralization assays using a monospecific rabbit antiserum to affinity-purified HPIV-3 HN glycoprotein. Rabbit anti-HN showed similar HA inhibition activities and neutralization titers (within twofold variation) with both the virus strains.

Subsequently, representative anti-HN and anti-F monoclonal antibodies recognizing distinct antigenic sites of the HN and F glycoprotein molecules were tested by enzyme-linked immunosorbent assay (ELISA). Dynatech polyvinyl plates (Immulon I) were coated with 1 .mu.g of freeze-thaw disrupted virions per well. Monoclonal antibodies were tested at twofold serial dilutions for each virus strain (cp45 and the wild type), and the results were compared with the linear slopes of the reactivity pattern.

The results are presented (FIG. 4) as the mean optical densities from three independent experiments, showing variations within 0.05 to 0.08. The antibodies recognized the HN and F glycoproteins of cp45 virus and by ELISA showed a titers similar to that of the wild-type virus. This suggests that the antigenic sites of cp45 virus were not altered as a result of its adaptation for growth at 20.degree. C.

Moreover, the cp45 virus glycoproteins are processed and transported to the cell surface even at the nonpermissive temperature. Infected L-132 cells were tested 24 h after infection by immunofluorescence with specific monoclonal antibodies to HN and F. Confluent monolayers of L-132 cells were grown on coverslips, infected with the virus, and incubated at 32.degree. or 39.5.degree. C. At 24 h postinfection, cells were washed with phosphate-buffered saline and tested with monoclonal antibodies. At both incubation temperatures (32.degree. and 39.5.degree. C.), cp45-infected cells showed immunofluorescence on the cell surface.

HA and fusion activity was also investigated. cp45 virus grown at 32.degree. C. was pelleted by ultracentrifugation and used for an HA assay to test the functional property of the HN glycoprotein. As the cp45 virus showed extremely poor growth at 39.5.degree. C., we tested the HA activity of infected cell homogenates following incubation at the nonpermissive temperature. Results showed detectable HA activity of the cp45 virus grown at the permissive or nonpermissive temperature. cp45 virus-infected LLC-MK.sub.2, Vero, and L-132 cells also showed formation of multinucleated giant cells or syncytium formation, a characteristic of virus fusion activity, when grown at 32.degree. C. However, fusion activity was significantly reduced upon incubation of cp45 virus-infected cells at 39.5.degree. C., probably because of poor replication of the virus at the nonpermissive temperature.

The molecular cloning and sequence analysis of the HPIV-3 NP, P, and L genes have been previously described. (Galinski et al. 1988; Galinski et al. 1986; Galinski et al. 1986'). Briefly, all genes were removed from their recombinant vectors by restriction endonuclease digestion and ligated into the appropriate sites of pcDL-SR beta 8.2 vector DNA. This vector is derived from pcDL-SR alpha-296 and contains a polyvalent restriction site with flanking T7 and SP6 promoter sequences downstream from the SR alpha promoter. pcDL-SR beta 8.2 is a multifunctional vector, and gene expression can be driven by using a simian virus 40 (SV40) early promoter or alternatively by using a vaccinia virus expressing T7 RNA polymerase.

Plasmids containing genomes which encode the NP, P and L proteins were incorporated into DNA vectors. Plasmid pSP18-NP, which contains the NP gene, was first digested with SphI, and the resulting cohesive end was repaired with T7 DNA polymerase. The gene was then released from the vector with BAMHI and ligated into pcDL-SR beta 8.2 which had been digested with EcoRI, subsequently repaired with Klenow fragment, and then further treated with BAMHI. Plasmid pSP19-P, which contains the P gene, was digested with BAMHI and PvuII to release the P gene. The gene was subsequently ligated into pcDL-SR beta 8.2 which had been digested with XbaI, subsequently repaired with Klenow fragment, and then further treated with BAMHI. Plasmid pGEM3-L, containing the L gene, was first digested with HindIII, and the resulting cohesive end was repaired with Klenow fragment. The L gene was then released from the vector with SacI and cloned into pcDL-SR beta 8.2 which has been digested with EcoRI, subsequently repaired with Klenow fragment, and then further treated with SacI.

All ligation reactions consisted of vector and gene fragments with compatible ends which would force ligation of the inserts in the desired orientation relative to the SR alpha and T7 promoters. Recombinant clones were randomly picked and further analyzed by restriction endonuclease digestion to confirm the orientation and efficacy of the subcloning. The gene termini were confirmed by dideoxy sequence analysis (U.S. Biochemical, Cleveland, Ohio) to ensure that the initiating methionine and termination codons were maintained.

To examine the biological properties of the various nucleocapsid-associated proteins, we initially tested for the protein expression of L (L-11), P (P-1), and NP (NP-1) in a transient expression system, using a recombinant vaccinia virus containing the bacteriophage T7 RNA polymerase gene (vTF7-3). HeLa-T4 cells, which are relatively resistant to the cytopathic effect of vaccinia virus, were infected with vTF7-3 and transfected with plasmids containing the HPIV-3 L, P, or NP gene, using Lipofectamine (Bethesda Research Laboratories, Gaithersburg, Md.).

Expression of the viral L, P and NP proteins was detected after 20 h in .sup.35 S!methionine-.sup.35 S!cysteine-labeled transfected cell lysates by immunoprecipitation with a hyperimmune rabbit antiserum to HPIV-3 or a monoclonal antibody to NP (FIG. 5(a)). Immunoprecipitates were analyzed by sodium dodecyl sulfate (SDS) -polyacrylamide gel electrophoresis (PAGE) and autoradiography. To obtain better resolution of the large-molecular-size L protein, immunoprecipitates were also separated in a lower-percentage polyacrylamide gel (FIG. 5(b)). Immunoprecipitated L, P, and NP polypeptides from the corresponding DNA-transfected cells were indistinguishable in size from the authentic viral proteins. The amount of the L protein appeared to be lower than that of the P or NP protein immunoprecipitated by the antiserum from transfected cell lysates.

This example considers whether CV-1 cells which were transiently expressing the L, P or NP proteins could rescue (that is, increase the replication of the virus, as measured by plaque assay) cp45 at the nonpermissive temperature. Briefly, CV-1 cells were cotransfected with the plasmid vector pRSV-T (encoding the SV40 large T antigen driven by a Rous sarcoma virus long terminal repeat) and one or more recombinant plasmids containing the NP, P, or L gene and incubated at 37.degree. C. Twenty hours posttransfection, the expressing cells were infected with cp45 or wild-type virus at a multiplicity of infection of 1, and infected cells were incubated for an additional 28 h at 39.5.degree. C. Following incubation, cell culture medium was harvested and HPIV-3 titers were determined by plaque assay in L-132 cells at permissive (32.degree. C.) and nonpermissive (39.5.degree. C.) temperatures. Infected cell monolayers were stained with hematoxylin and eosin-Y or, alternatively, overlaid with 0.9% agar and 0.005% neutral red for visualization of viral plaques.

Although the vaccinia virus system provided excellent levels of expression, because of the concern regarding the use of a viral vector which causes extensive cytopathic effect in the cell monolayer and the difficulties inherent to measuring HPIV-3 replication in vaccinia virus coinfection experiments, we used an expression system which did not require the use of vaccinia virus to drive transcription of our plasmid vectors.

The vector pcDL-SR beta 8.2 contains a promoter, designated SR alpha, consisting of the SV40 early promoter and the R segment and part of the U5 sequence (R-U5') of the long terminal repeat of human T-cell leukemia virus type 1. The vector also contained the SV40 origin of replication and gives significant levels of protein expression in COS-1 or COS-7 cells, in which the plasmids are amplified by the endogenous levels of T antigen. The utility of this expression system was extended to CV-1 cells by coexpression in trans of the large T antigen from another plasmid vector, pRSV-T (35), kindly provided by James Pipas, University of Pittsburgh.

The transfected CV-1 cells were tested initially for intracellular expression of the viral proteins by immunofluorescence. Briefly, cells were fixed with acetone-methanol (1:1) for 10 min at -20.degree. C. A hyperimmune rabbit antiserum to HPIV-3 (thoroughly preadsorbed with mock-transfected cells) was used as the primary antibody, and a fluorescein isothiocyanate tagged mouse anti-rabbit immunoglobulin G was used as the second antibody. Cells were examined at a magnification of 33 600 on a Nikon microscope equipped for epifluorescence, and digital photographs were captured by using a computer imaging system (Oncor Image Systems, Inc.).

As shown in FIG. 6, L and P appeared to form small inclusions, whereas NP seemed to give a more homogeneous, punctate staining pattern. Negative control cells did not show any detectable immunofluorescence.

The results of a typical complementation experiment are shown in Table 3; similar results were achieved in assays performed in triplicate. Virus yield at 39.5.degree. C. showed significant levels of cp45 replication at the nonpermissive temperature. These results indicate that the wild-type L protein was biologically functional and could complement the temperature sensitive mutation of the cp45 L protein, whereas expression of P and NP in the absence of L was nonfunctional. The virus titer represents a complementation efficiency of approximately 950 and 11,500 PFU of virus per 3.times.10.sup.6 cells. Cells transfected with L, P, and NP show a 10-fold increase in cp45 virus yield compared with cells transfected with L alone or with L and P. This may be due to interactions among these proteins for the formation of the nucleocapsid complex for efficient virus replication. However, their specific interactions during virus replication remain to be determined.

The results of this example further support the role of the L protein as an RNA-dependent RNA polymerase activity essential for transcription and the life cycle of HPIV-3. Other cell lines, not transfected with the L gene, failed to produce detectable virus titers. Sensitive Phenotype in cp45 Progeny

cp45 virus produced from L-gene-transfected CV-1 cells at the nonpermissive temperature should remain temperature sensitive for growth despite their ability to replicate in L-expressing cells. At least 10 plaque-purified virus stocks of the progeny rescued virus were examined, and all virus stocks were found to have maintained their temperature sensitive property.

Further, L-protein complementation of cp45 is heterotypic exclusive. L-132 or primary rhesus monkey kidney cells, when coinfected with HPIV-1 and cp45, did not rescue growth of cp45 at the nonpermissive temperature. Measles

The methodology for producing cp45-hybrid vaccines is described above. Target viruses such as HPIV-1, HPIV-2, RSV, influenza and measles each have surface proteins which are functionally analogous to the F and HN proteins of HPIV-3. The nucleic acid sequences for each of these viruses is well known, as detailed below.

HPIV-1 and HPIV-2, like HPIV-3, each have two surface glycoproteins, HN and F, which are functionally similar to HPIV-3's HN and F proteins. For both type 1 and type 2 parainfluenza viruses, the H portion of the HN protein and the F protein are related to attachment and penetration, respectively, while the N portion of the HN protein is responsible for release of progeny virions. The nucleic acid sequences of the F gene and HN gene for HPIV-1 have been previously determined. (Merson et al. 1988; Matsuoka et al. 1990). The nucleic acid sequences of the F gene and the HN gene for HPIV-2 have likewise been determined. (Hu et al. 1990; Precious et al. 1990; Kawano et al. 1990'; Kawano et al. 1990)

RSV-A and RSV-B each have two surface glycoproteins, F and G. The G protein is functionally analogous to HPIV-3's HN protein; it has activities related to attachment onto a host cell, and following infection of the host, to release of progeny virions. F is related to penetration of the nucleocapsid into the host cell. The nucleic acid sequences of the F gene and G gene for RSV-A have been determined. (Lopez et al. 1988; Martin-Gallardo et al. 1991; Anderson et al. 1992; Martin-Gallardo et al. 1993; Collins et al. 1993). The nucleic acid sequences of the F gene and G gene for RSV-B have also been previously determined. (Baybutt and Pringle 1987; Sullender et al. 1990; Sullender et al. 1991). These sequences or portions thereof have also been extensively compared. (Johnson and Collins 1988; Johnson and Collins 1988').

Influenza types A and B also have two surface glycoproteins: H and N. The H protein has activities related to attachment and penetration onto and into a host cell. The N protein relates to release of progeny virions from the infected host. Although the antigenic sites for influenza viruses typically change every year or so, samples of current strains are readily available from the U.S. Center for Infectious Disease Control, and the nucleic acid sequences defining the current surface glycoproteins can be determined therefrom.

Measles viruses also has two surface glycoproteins: HN and F. Like HPIV-3, the H portion of the HN protein and the F protein are related to attachment and penetration, respectively, while the N portion of the HN protein is responsible for release of progeny virions.

Bovine RSV has two surface glycoproteins which are functionally analogous to the human RSV strains. The nucleic acid sequences for bovine RSV G and F glycoproteins have been determined. (Lerch et al. 1990; Walravens et al. 1990).

In light of the detailed description of the invention and the examples presented above, it can be appreciated that the several objects of the invention are achieved.

The explanations and illustrations presented herein are intended to acquaint others skilled in the art with the invention, its principles, and its practical application. Those skilled in the art may adapt and apply the invention in its numerous forms, as may be best suited to the requirements of a particular use. Accordingly, the specific embodiments of the present invention as set forth are not intended as being exhaustive or limiting of the invention. syncytial virus fusion glycoprotein: Amino acid substitutions affecting folding, transport and cleavage. J. Gen. Virol. 73(Pt. 5):1177-88. induction of three phenotypic markers. J. Med. Virol. 10:235-242. parainfluenza virus type 3 vaccine in children. J. Clin. Microbiol. 30:2064-2070. membrane protein genes of the RSS-2 strain of respiratory syncytial virus. J. Gen. Virol. 68 (Pt 11):2789-96. wild-type human parainfluenza type 3 viruses in adult volunteers and in chimpanzees. J. Clin. 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SEQUENCE LISTING (1) GENERAL INFORMATION: (iii) NUMBER OF SEQUENCES: 2 (2) INFORMATION FOR SEQ ID NO:1: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 2233 amino acids (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (vi) ORIGINAL SOURCE: (A) ORGANISM: Human parainfluenza virus 3 (B) STRAIN: JS (xi) SEQUENCE DESCRIPTION: SEQ ID NO:1: MetAspThrGluSerAsnAsnGlyThrValSerAspIleLeuTyrPro 151015 GluCysHisLeuAsnSerProIleValLysGlyLysIleAlaGlnLeu 202530 HisThrIleMetSerLeuProGlnProTyrAspMetAspAspAspSer 354045 IleLeuValIleThrArgGlnLysIleLysLeuAsnLysLeuAspLys 505560 ArgGlnArgSerIleArgArgLeuLysLeuIleLeuThrGluLysVal 65707580 AsnAspLeuGlyLysTyrThrPheIleArgTyrProGluMetSerLys 859095 GluMetPheLysLeuTyrIleProGlyIleAsnSerLysValThrGlu 100105110 LeuLeuLeuLysAlaAspArgThrTyrSerGlnMetThrAspGlyLeu 115120125 ArgAspLeuTrpIleAsnValLeuSerLysLeuAlaSerLysAsnAsp 130135140 GlySerAsnTyrAspLeuAsnGluGluIleAsnAsnIleSerLysVal 145150155160 HisThrThrTyrLysSerAspLysTrpTyrAsnProPheLysThrTrp 165170175 PheThrIleLysTyrAspMetArgArgLeuGlnLysAlaArgAsnGlu 180185190 IleThrPheAsnValGlyLysAspTyrAsnLeuLeuGluAspGlnLys 195200205 AsnPheLeuLeuIleHisProGluLeuValLeuIleLeuAspLysGln 210215220 AsnTyrAsnGlyTyrLeuIleThrProGluLeuValLeuMetTyrCys 225230235240 AspValValGluGlyArgTrpAsnIleSerAlaCysAlaLysLeuAsp 245250255 ProLysLeuGlnSerMetTyrGlnLysGlyAsnAsnLeuTrpGluVal 260265270 IleAspLysLeuPheProIleMetGlyGluLysThrPheAspValIle 275280285 SerLeuLeuGluProLeuAlaLeuSerLeuIleGlnThrHisAspPro 290295300 ValLysGlnLeuArgGlyAlaPheLeuAsnHisValLeuSerGluMet 305310315320 GluLeuIlePheGluSerArgGluSerIleLysGluPheLeuSerVal 325330335 AspTyrIleAspLysIleLeuAspIlePheAsnLysSerThrIleAsp 340345350 GluIleAlaGluIlePheSerPhePheArgThrPheGlyHisProPro 355360365 LeuGluAlaSerIleAlaAlaGluLysValArgLysTyrMetTyrIle 370375380 GlyLysGlnLeuLysPheAspThrIleAsnLysCysHisAlaIlePhe 385390395400 CysThrIleIleIleAsnGlyTyrArgGluArgHisGlyGlyGlnTrp 405410415 ProProValThrLeuProAspHisAlaHisGluPheIleIleAsnAla 420425430 TyrGlySerAsnSerAlaIleSerTyrGluAsnAlaValAspTyrTyr 435440445 GlnSerPheIleGlyIleLysPheAsnLysPheIleGluProGlnLeu 450455460 AspGluAspLeuThrIleTyrMetLysAspLysAlaLeuSerProLys 465470475480 LysSerAsnTrpAspThrValTyrProAlaSerAsnLeuLeuTyrArg 485490495 ThrAsnAlaSerAsnGluSerArgArgLeuValGluValPheIleAla 500505510 AspSerLysPheAspProHisGlnIleLeuAspTyrValGluSerGly 515520525 AspTrpLeuAspAspProGluPheAsnIleSerTyrSerLeuLysGlu 530535540 LysGluIleLysGlnGluGlyArgLeuPheAlaLysMetThrTyrLys 545550555560 MetArgAlaThrGlnValLeuSerGluThrLeuLeuAlaAsnAsnIle 565570575 GlyLysPhePheGlnGluAsnGlyMetValLysGlyGluIleGluLeu 580585590 LeuLysArgLeuThrThrIleSerIleSerGlyValProArgTyrAsn 595600605 GluValTyrAsnAsnSerLysSerHisThrAspAspLeuLysThrTyr 610615620 AsnLysIleSerAsnLeuAsnLeuSerSerAsnGlnLysSerLysLys 625630635640 PheGluPheLysSerThrAspIleTyrAsnAspGlyTyrGluThrVal 645650655 SerCysPheLeuThrThrAspLeuLysLysTyrCysLeuAsnTrpArg 660665670 TyrGluSerThrAlaLeuPheGlyGluThrCysAsnGlnIlePheGly 675680685 LeuAsnLysLeuPheAsnTrpLeuHisProArgLeuGluGlySerThr 690695700 IleTyrValGlyAspProTyrCysProProSerAspLysGluHisIle 705710715720 SerLeuGluAspHisProAspSerGlyPheTyrValHisAsnProArg 725730735 GlyGlyIleGluGlyPheCysGlnLysLeuTrpThrLeuIleSerIle 740745750 SerAlaIleHisLeuAlaAlaValArgIleGlyValArgValThrAla 755760765 MetValGlnGlyAspAsnGlnAlaIleAlaValThrThrArgValPro 770775780 AsnAsnTyrAspTyrArgValLysLysGluIleValTyrLysAspVal 785790795800 ValArgPhePheAspSerLeuArgGluValMetAspAspLeuGlyHis 805810815 GluLeuLysLeuAsnGluThrIleIleSerSerLysMetPheIleTyr 820825830 SerLysArgIleTyrTyrAspGlyArgIleLeuProGlnAlaLeuLys 835840845 AlaLeuSerArgCysValPheTrpSerGluThrValIleAspGluThr 850855860 ArgSerAlaSerSerAsnLeuAlaThrSerPheAlaLysAlaIleGlu 865870875880 AsnGlyTyrSerProValLeuGlyTyrAlaCysSerIlePheLysAsn 885890895 IleGlnGlnLeuTyrIleAlaLeuGlyMetAsnIleAsnProThrIle 900905910 ThrGlnAsnIleArgAspGlnTyrPheArgAsnProAsnTrpMetGln 915920925 TyrAlaSerLeuIleProAlaSerValGlyGlyPheAsnTyrMetAla 930935940 MetSerArgCysPheValArgAsnIleGlyAspProSerValAlaAla 945950955960 LeuAlaAspIleLysArgPheIleLysAlaAsnLeuLeuAspArgSer 965970975 ValLeuTyrArgIleMetAsnGlnGluProGlyGluSerSerPheLeu 980985990 AspTrpAlaSerAspProTyrSerCysAsnLeuProGlnSerGlnAsn 99510001005 IleThrThrMetIleLysAsnIleThrAlaArgAsnValLeuGlnAsp 101010151020 SerProAsnProLeuLeuSerGlyLeuPheThrAsnThrMetIleGlu 1025103010351040 GluAspGluGluLeuAlaGluPheLeuMetAspArgLysValIleLeu 104510501055 ProArgValAlaHisAspIleLeuAspAsnSerLeuThrGlyIleArg 106010651070 AsnAlaIleAlaGlyMetLeuAspThrThrLysSerLeuIleArgVal 107510801085 GlyIleAsnArgGlyGlyLeuThrTyrSerLeuLeuArgLysIleSer 109010951100 AsnTyrAspLeuValGlnTyrGluThrLeuSerArgThrLeuArgLeu 1105111011151120 IleValSerAspLysIleLysTyrGluAspMetCysSerValAspLeu 112511301135 AlaIleAlaLeuArgGlnLysMetTrpIleHisLeuSerGlyGlyArg 114011451150 MetIleSerGlyLeuGluThrProAspProLeuGluLeuLeuSerGly 115511601165 ValValIleThrGlySerGluHisCysLysIleCysTyrSerSerAsp 117011751180 GlyThrAsnProTyrThrTrpMetTyrLeuProGlyAsnIleLysIle 1185119011951200 GlySerAlaGluThrGlyIleSerSerLeuArgValProTyrPheGly 120512101215 SerValThrAspGluArgSerGluAlaGlnLeuGlyTyrIleLysAsn 122012251230 LeuSerLysProAlaLysAlaAlaIleArgIleAlaMetIleTyrThr 123512401245 TrpAlaPheGlyAsnAspGluIleSerTrpMetGluAlaSerGlnIle 125012551260 AlaGlnThrArgAlaAsnPheThrLeuAspSerLeuLysIleLeuThr 1265127012751280 ProValAlaThrSerThrAsnLeuSerHisArgLeuLysAspThrAla 128512901295 ThrGlnMetLysPheSerSerThrSerLeuIleArgValSerArgPhe 130013051310 IleThrMetSerAsnAspAsnMetSerIleLysGluAlaAsnGluThr 131513201325 LysAspThrAsnLeuIleTyrGlnGlnIleMetLeuThrGlyLeuSer 133013351340 ValPheGluTyrLeuPheArgLeuLysGluThrThrGlyHisAsnPro 1345135013551360 IleValMetHisLeuHisIleGluAspGluCysCysIleLysGluSer 136513701375 PheAsnAspGluHisIleAsnProGluSerThrLeuGluLeuIleArg 138013851390 TyrProGluSerAsnGluPheIleTyrAspLysAspProLeuLysAsp 139514001405 ValAspLeuSerLysLeuMetValIleLysAspHisSerTyrThrIle 141014151420 AspMetAsnTyrTrpAspAspThrAspIleIleHisAlaIleSerIle 1425143014351440 CysThrAlaIleThrIleAlaAspThrMetSerGlnLeuAspArgAsp 144514501455 AsnLeuLysGluIleIleValIleAlaAsnAspAspAspIleAsnSer 146014651470 LeuIleThrGluPheLeuThrLeuAspIleLeuValPheLeuLysThr 147514801485 PheGlyGlyLeuLeuValAsnGlnPheAlaTyrThrLeuTyrSerLeu 149014951500 LysIleGluGlyArgAspLeuIleTrpAspTyrIleMetArgThrLeu 1505151015151520 ArgAspThrSerHisSerIleLeuLysValLeuSerAsnAlaLeuSer 152515301535 HisProLysValPheLysArgPheTrpAspCysGlyValLeuAsnPro 154015451550 IleTyrGlyProAsnThrAlaSerGlnAspGlnIleLysLeuAlaLeu 155515601565 SerIleCysGluTyrSerLeuAspLeuPheMetArgGluTrpLeuAsn 157015751580 GlyValSerLeuGluIleTyrIleCysAspSerAspMetGluValAla 1585159015951600 AsnAspArgLysGlnAlaPheIleSerArgHisLeuSerPheValCys 160516101615 CysLeuAlaGluIleAlaSerPheGlyProAsnLeuLeuAsnLeuThr 162016251630 TyrLeuGluArgLeuAspLeuLeuLysGlnTyrLeuGluLeuAsnIle 163516401645 LysGluAspProThrLeuLysTyrValGlnIleSerGlyLeuLeuIle 165016551660 LysSerPheProSerThrValThrTyrValArgLysThrAlaIleLys 1665167016751680 TyrLeuArgIleArgGlyIleSerProProGluValIleAspAspTrp 168516901695 AspProValGluAspGluAsnMetLeuAspAsnIleValLysThrIle 170017051710 AsnAspAsnCysAsnLysAspAsnLysGlyAsnLysIleAsnAsnPhe 171517201725 TrpGlyLeuAlaLeuLysAsnTyrGlnValLeuLysIleArgSerIle 173017351740 ThrSerAspSerAspAspAsnAspArgLeuAspAlaAsnThrSerGly 1745175017551760 LeuThrLeuProGlnGlyGlyAsnTyrLeuSerHisGlnLeuArgLeu 176517701775 PheGlyIleAsnSerThrSerCysLeuLysAlaLeuGluLeuSerGln 178017851790 IleLeuMetLysGluValAsnLysAspLysAspArgLeuPheLeuGly 179518001805 GluGlyAlaGlyAlaMetLeuAlaCysTyrAspAlaThrLeuGlyPro 181018151820 AlaValAsnTyrTyrAsnSerGlyLeuAsnIleThrAspValIleGly 1825183018351840 GlnArgGluLeuLysIlePheProSerGluValSerLeuValGlyLys 184518501855 LysLeuGlyAsnValThrGlnIleLeuAsnArgValLysValLeuPhe 186018651870 AsnGlyAsnProAsnSerThrTrpIleGlyAsnMetGluCysGluSer 187518801885 LeuIleTrpSerGluLeuAsnAspLysSerIleGlyLeuValHisCys 189018951900 AspMetGluGlyAlaIleGlyLysSerGluGluThrValLeuHisGlu 1905191019151920 HisTyrSerValIleArgIleThrTyrLeuIleGlyAspAspAspVal 192519301935 ValLeuValSerLysIleIleProThrIleThrProAsnTrpSerArg 194019451950 IleLeuTyrLeuTyrLysLeuTyrTrpLysAspValSerIleIleSer 195519601965 LeuLysThrSerAsnProAlaSerThrGluLeuTyrLeuIleSerLys 197019751980 AspAlaTyrCysThrIleMetGluProSerGluIleValLeuSerLys 1985199019952000 LeuLysArgLeuSerLeuLeuGluGluAsnAsnLeuLeuLysTrpIle 200520102015 IleLeuSerLysLysArgAsnAsnGluTrpLeuHisHisGluIleLys 202020252030 GluGlyGluArgAspTyrGlyIleMetArgProTyrHisMetAlaLeu 203520402045 GlnIlePheGlyPheGlnIleAsnLeuAsnHisLeuAlaLysGluPhe 205020552060 LeuSerThrProAspLeuThrAsnIleAsnAsnIleIleGlnSerPhe 2065207020752080 GlnArgThrIleLysAspValLeuPheGluTrpIleAsnIleThrHis 208520902095 AspAspLysArgHisLysLeuGlyGlyArgTyrAsnIlePheProLeu 210021052110 LysAsnLysGlyLysLeuArgLeuLeuSerArgArgLeuValLeuSer 211521202125 TrpIleSerLeuSerLeuSerThrArgLeuLeuThrGlyArgPhePro 213021352140 AspGluLysPheGluHisArgAlaGlnThrGlyTyrValSerLeuAla 2145215021552160 AspThrAspLeuGluSerLeuLysLeuLeuSerLysAsnIleIleLys 216521702175 AsnTyrArgGluCysIleGlySerIleSerTyrTrpPheLeuThrLys 218021852190 GluValLysIleLeuMetLysLeuIleGlyGlyAlaLysLeuLeuGly 219522002205 IleProArgGlnTyrLysGluProGluAspGlnLeuLeuGluAsnTyr 221022152220 AsnGlnHisAspGluPheAspIleAsp 22252230 (2) INFORMATION FOR SEQ ID NO:2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 2233 amino acids (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (vi) ORIGINAL SOURCE: (A) ORGANISM: Human parainfluenza virus 3 (B) STRAIN: cp45 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: MetAspThrGluSerAsnAsnGlyThrValSerAspIleLeuTyrPro 151015 GluCysHisLeuAsnSerProIleValLysGlyLysIleAlaGlnLeu 202530 HisThrIleMetSerLeuProGlnProTyrAspMetAspAspAspSer 354045 IleLeuValIleThrArgGlnLysIleLysLeuAsnLysLeuAspLys 505560 ArgGlnArgSerIleArgArgLeuLysLeuIleLeuThrGluLysVal 65707580 AsnAspLeuGlyLysTyrThrPheIleArgTyrProGluMetSerLys 859095 GluMetPheLysLeuTyrIleProGlyIleAsnSerLysValThrGlu 100105110 LeuLeuLeuLysAlaAspArgThrTyrSerGlnMetThrAspGlyLeu 115120125 ArgAspLeuTrpIleAsnValLeuSerLysLeuAlaSerLysAsnAsp 130135140 GlySerAsnTyrAspLeuAsnGluGluIleAsnAsnIleSerLysVal 145150155160 HisThrThrTyrLysSerAspLysTrpTyrAsnProPheLysThrTrp 165170175 PheThrIleLysTyrAspMetArgArgLeuGlnLysAlaArgAsnGlu 180185190 IleThrPheAsnValGlyLysAspTyrAsnLeuLeuGluAspGlnLys 195200205 AsnPheLeuLeuIleHisProGluLeuValLeuIleLeuAspLysGln 210215220 AsnTyrAsnGlyTyrLeuIleThrProGluLeuValLeuMetTyrCys 225230235240 AspValValGluGlyArgTrpAsnIleSerAlaCysAlaLysLeuAsp 245250255 ProLysLeuGlnSerMetTyrGlnLysGlyAsnAsnLeuTrpGluVal 260265270 IleAspLysLeuPheProIleMetGlyGluLysThrPheAspValIle 275280285 SerLeuLeuGluProLeuAlaLeuSerLeuIleGlnThrHisAspPro 290295300 ValLysGlnLeuArgGlyAlaPheLeuAsnHisValLeuSerGluMet 305310315320 GluLeuIlePheGluSerArgGluSerIleLysGluPheLeuSerVal 325330335 AspTyrIleAspLysIleLeuAspIlePheAsnLysSerThrIleAsp 340345350 GluIleAlaGluIlePheSerPhePheArgThrPheGlyHisProPro 355360365 LeuGluAlaSerIleAlaAlaGluLysValArgLysTyrMetTyrIle 370375380 GlyLysGlnLeuLysPheAspThrIleAsnLysCysHisAlaIlePhe 385390395400 CysThrIleIleIleAsnGlyTyrArgGluArgHisGlyGlyGlnTrp 405410415 ProProValThrLeuProAspHisAlaHisGluPheIleIleAsnAla 420425430 TyrGlySerAsnSerAlaIleSerTyrGluAsnAlaValAspTyrTyr 435440445 GlnSerPheIleGlyIleLysPheAsnLysPheIleGluProGlnLeu 450455460 AspGluAspLeuThrIleTyrMetLysAspLysAlaLeuSerProLys 465470475480 LysSerAsnTrpAspThrValTyrProAlaSerAsnLeuLeuTyrArg 485490495 ThrAsnAlaSerAsnGluSerArgArgLeuValGluValPheIleAla 500505510 AspSerLysPheAspProHisGlnIleLeuAspTyrValGluSerGly 515520525 AspTrpLeuAspAspProGluPheAsnIleSerTyrSerLeuLysGlu 530535540 LysGluIleLysGlnGluGlyArgLeuPheAlaLysMetThrTyrLys 545550555560 MetArgAlaThrGlnValLeuSerGluThrLeuLeuAlaAsnAsnIle 565570575 GlyLysPhePheGlnGluAsnGlyMetValLysGlyGluIleGluLeu 580585590 LeuLysArgLeuThrThrIleSerIleSerGlyValProArgTyrAsn 595600605 GluValTyrAsnAsnSerLysSerHisThrAspAspLeuLysThrTyr 610615620 AsnLysIleSerAsnLeuAsnLeuSerSerAsnGlnLysSerLysLys 625630635640 PheGluPheLysSerThrAspIleTyrAsnAspGlyTyrGluThrVal 645650655 SerCysPheLeuThrThrAspLeuLysLysTyrCysLeuAsnTrpArg 660665670 TyrGluSerThrAlaLeuPheGlyGluThrCysAsnGlnIlePheGly 675680685 LeuAsnLysLeuPheAsnTrpLeuHisProArgLeuGluGlySerThr 690695700 IleTyrValGlyAspProTyrCysProProSerAspLysGluHisIle 705710715720 SerLeuGluAspHisProAspSerGlyPheTyrValHisAsnProArg 725730735 GlyGlyIleGluGlyPheCysGlnLysLeuTrpThrLeuIleSerIle 740745750 SerAlaIleHisLeuAlaAlaValArgIleGlyValArgValThrAla 755760765 MetValGlnGlyAspAsnGlnAlaIleAlaValThrThrArgValPro 770775780 AsnAsnTyrAspTyrArgValLysLysGluIleValTyrLysAspVal 785790795800 ValArgPhePheAspSerLeuArgGluValMetAspAspLeuGlyHis 805810815 GluLeuLysLeuAsnGluThrIleIleSerSerLysMetPheIleTyr 820825830 SerLysArgIleTyrTyrAspGlyArgIleLeuProGlnAlaLeuLys 835840845 AlaLeuSerArgCysValPheTrpSerGluThrValIleAspGluThr 850855860 ArgSerAlaSerSerAsnLeuAlaThrSerPheAlaLysAlaIleGlu 865870875880 AsnGlyTyrSerProValLeuGlyTyrAlaCysSerIlePheLysAsn 885890895 IleGlnGlnLeuTyrIleAlaLeuGlyMetAsnIleAsnProThrIle 900905910 ThrGlnAsnIleArgAspGlnTyrPheArgAsnProAsnTrpMetGln 915920925 TyrAlaSerLeuIleProAlaSerValGlyGlyPheAsnHisMetAla 930935940 MetSerArgCysPheValArgAsnIleGlyAspProSerValAlaAla 945950955960 LeuAlaAspIleLysArgPheIleLysAlaAsnLeuLeuAspArgSer 965970975 ValLeuTyrArgIleMetAsnGlnGluProGlyGluSerSerPhePhe 980985990 AspTrpAlaSerAspProTyrSerCysAsnLeuProGlnSerGlnAsn 99510001005 IleThrThrMetIleLysAsnIleThrAlaArgAsnValLeuGlnAsp 101010151020 SerProAsnProLeuLeuSerGlyLeuPheThrAsnThrMetIleGlu 1025103010351040 GluAspGluGluLeuAlaGluPheLeuMetAspArgLysValIleLeu 104510501055 ProArgValAlaHisAspIleLeuAspAsnSerLeuThrGlyIleArg 106010651070 AsnAlaIleAlaGlyMetLeuAspThrThrLysSerLeuIleArgVal 107510801085 GlyIleAsnArgGlyGlyLeuThrTyrSerLeuLeuArgLysIleSer 109010951100 AsnTyrAspLeuValGlnTyrGluThrLeuSerArgThrLeuArgLeu 1105111011151120 IleValSerAspLysIleLysTyrGluAspMetCysSerValAspLeu 112511301135 AlaIleAlaLeuArgGlnLysMetTrpIleHisLeuSerGlyGlyArg 114011451150 MetIleSerGlyLeuGluThrProAspProLeuGluLeuLeuSerGly 115511601165 ValValIleThrGlySerGluHisCysLysIleCysTyrSerSerAsp 117011751180 GlyThrAsnProTyrThrTrpMetTyrLeuProGlyAsnIleLysIle 1185119011951200 GlySerAlaGluThrGlyIleSerSerLeuArgValProTyrPheGly 120512101215 SerValThrAspGluArgSerGluAlaGlnLeuGlyTyrIleLysAsn 122012251230 LeuSerLysProAlaLysAlaAlaIleArgIleAlaMetIleTyrThr 123512401245 TrpAlaPheGlyAsnAspGluIleSerTrpMetGluAlaSerGlnIle 125012551260 AlaGlnThrArgAlaAsnPheThrLeuAspSerLeuLysIleLeuThr 1265127012751280 ProValAlaThrSerThrAsnLeuSerHisArgLeuLysAspThrAla 128512901295 ThrGlnMetLysPheSerSerThrSerLeuIleArgValSerArgPhe 130013051310 IleThrMetSerAsnAspAsnMetSerIleLysGluAlaAsnGluThr 131513201325 LysAspThrAsnLeuIleTyrGlnGlnIleMetLeuThrGlyLeuSer 133013351340 ValPheGluTyrLeuPheArgLeuLysGluThrThrGlyHisAsnPro 1345135013551360 IleValMetHisLeuHisIleGluAspGluCysCysIleLysGluSer 136513701375 PheAsnAspGluHisIleAsnProGluSerThrLeuGluLeuIleArg 138013851390 TyrProGluSerAsnGluPheIleTyrAspLysAspProLeuLysAsp 139514001405 ValAspLeuSerLysLeuMetValIleLysAspHisSerTyrThrIle 141014151420 AspMetAsnTyrTrpAspAspThrAspIleIleHisAlaIleSerIle 1425143014351440 CysThrAlaIleThrIleAlaAspThrMetSerGlnLeuAspArgAsp 144514501455 AsnLeuLysGluIleIleValIleAlaAsnAspAspAspIleAsnSer 146014651470 LeuIleThrGluPheLeuThrLeuAspIleLeuValPheLeuLysThr 147514801485 PheGlyGlyLeuLeuValAsnGlnPheAlaTyrThrLeuTyrSerLeu 149014951500 LysIleGluGlyArgAspLeuIleTrpAspTyrIleMetArgThrLeu 1505151015151520 ArgAspThrSerHisSerIleLeuLysValLeuSerAsnAlaLeuSer 152515301535 HisProLysValPheLysArgPheTrpAspCysGlyValLeuAsnPro 154015451550 IleTyrGlyProAsnIleAlaSerGlnAspGlnIleLysLeuAlaLeu 155515601565 SerIleCysGluTyrSerLeuAspLeuPheMetArgGluTrpLeuAsn 157015751580 GlyValSerLeuGluIleTyrIleCysAspSerAspMetGluValAla 1585159015951600 AsnAspArgLysGlnAlaPheIleSerArgHisLeuSerPheValCys 160516101615 CysLeuAlaGluIleAlaSerPheGlyProAsnLeuLeuAsnLeuThr 162016251630 TyrLeuGluArgLeuAspLeuLeuLysGlnTyrLeuGluLeuAsnIle 163516401645 LysGluAspProThrLeuLysTyrValGlnIleSerGlyLeuLeuIle 165016551660 LysSerPheProSerThrValThrTyrValArgLysThrAlaIleLys 1665167016751680 TyrLeuArgIleArgGlyIleSerProProGluValIleAspAspTrp 168516901695 AspProValGluAspGluAsnMetLeuAspAsnIleValLysThrIle 170017051710 AsnAspAsnCysAsnLysAspAsnLysGlyAsnLysIleAsnAsnPhe 171517201725 TrpGlyLeuAlaLeuLysAsnTyrGlnValLeuLysIleArgSerIle 173017351740 ThrSerAspSerAspAspAsnAspArgLeuAspAlaAsnThrSerGly 1745175017551760 LeuThrLeuProGlnGlyGlyAsnTyrLeuSerHisGlnLeuArgLeu 176517701775 PheGlyIleAsnSerThrSerCysLeuLysAlaLeuGluLeuSerGln 178017851790 IleLeuMetLysGluValAsnLysAspLysAspArgLeuPheLeuGly 179518001805 GluGlyAlaGlyAlaMetLeuAlaCysTyrAspAlaThrLeuGlyPro 181018151820 AlaValAsnTyrTyrAsnSerGlyLeuAsnIleThrAspValIleGly 1825183018351840 GlnArgGluLeuLysIlePheProSerGluValSerLeuValGlyLys 184518501855 LysLeuGlyAsnValThrGlnIleLeuAsnArgValLysValLeuPhe 186018651870 AsnGlyAsnProAsnSerThrTrpIleGlyAsnMetGluCysGluSer 187518801885 LeuIleTrpSerGluLeuAsnAspLysSerIleGlyLeuValHisCys 189018951900 AspMetGluGlyAlaIleGlyLysSerGluGluThrValLeuHisGlu 1905191019151920 HisTyrSerValIleArgIleThrTyrLeuIleGlyAspAspAspVal 192519301935 ValLeuValSerLysIleIleProThrIleThrProAsnTrpSerArg 194019451950 IleLeuTyrLeuTyrLysLeuTyrTrpLysAspValSerIleIleSer 195519601965 LeuLysThrSerAsnProAlaSerThrGluLeuTyrLeuIleSerLys 197019751980 AspAlaTyrCysThrIleMetGluProSerGluIleValLeuSerLys 1985199019952000 LeuLysArgLeuSerLeuLeuGluGluAsnAsnLeuLeuLysTrpIle 200520102015 IleLeuSerLysLysArgAsnAsnGluTrpLeuHisHisGluIleLys 202020252030 GluGlyGluArgAspTyrGlyIleMetArgProTyrHisMetAlaLeu 203520402045 GlnIlePheGlyPheGlnIleAsnLeuAsnHisLeuAlaLysGluPhe 205020552060 LeuSerThrProAspLeuThrAsnIleAsnAsnIleIleGlnSerPhe 2065207020752080 GlnArgThrIleLysAspValLeuPheGluTrpIleAsnIleThrHis 208520902095 AspAspLysArgHisLysLeuGlyGlyArgTyrAsnIlePheProLeu 210021052110 LysAsnLysGlyLysLeuArgLeuLeuSerArgArgLeuValLeuSer 211521202125 TrpIleSerLeuSerLeuSerThrArgLeuLeuThrGlyArgPhePro 213021352140 AspGluLysPheGluHisArgAlaGlnThrGlyTyrValSerLeuAla 2145215021552160 AspThrAspLeuGluSerLeuLysLeuLeuSerLysAsnIleIleLys 216521702175 AsnTyrArgGluCysIleGlySerIleSerTyrTrpPheLeuThrLys 218021852190 GluValLysIleLeuMetLysLeuIleGlyGlyAlaLysLeuLeuGly 219522002205 IleProArgGlnTyrLysGluProGluAspGlnLeuLeuGluAsnTyr 221022152220 AsnGlnHisAspGluPheAspIleAsp 22252230 __________________________________________________________________________

## Claims

1. A hybrid virus comprising genome which includes (i) a nucleic acid sequence which encodes each surface antigen of an enveloped, negative-sense, single-stranded RNA target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV, and (ii) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1, the variant L protein attenuating replication of the virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C.

2. The vaccine of claim 1 wherein the genome of the virus further comprises: (i) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of a HPIV-3 virus and (ii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of a HPIV-3 virus.

3. The vaccine of claim 1 wherein the genome of the virus further comprises: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of a HPIV-3 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of a HPIV-3 virus; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of a HPIV-3 virus; and (iv) a nucleic acid sequence which encodes the matrix protein, (M), of a HPIV-3 virus.

4. A live, attenuated vaccine comprising genome which comprises: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of a human parainfluenza virus (HPIV) type 3 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of a HPIV-3 virus; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of a HPIV-3 virus; (iv) a nucleic acid sequence which encodes the matrix protein, (M), of a HPIV-3 virus; (v) a nucleic acid sequence which encodes each surface antigen of an enveloped, negative-sense, single-stranded RNA target virus selected from the group consisting of HPIV-1, HPIV-2, and respiratory syncytial virus (RSV); and (vi) a nucleic acid sequence which encodes a variant HPIV-3 large protein, (L), the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO: 1 and Phe for Leu at residue 992 of SEQ ID NO: 1, the variant L protein attenuating replication of the virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C., and

5. The vaccine of claim 4 wherein the substitutions in amino acid sequence of the variant L protein further comprise the substitution of Ile for Thr at residue 1558 of SEQ ID NO:1.

6. The vaccine of claim 4 wherein the variant L protein is the cp45 L protein.

7. The vaccine of claim 4 wherein the variant L protein is an RNA-dependent RNA polymerase having polymerase activity which is at least about 10 times less than the polymerase activity of the target virus at a temperature of about 39.degree. C.

8. The vaccine of claim 4 wherein the variant L protein is associated with a temperature sensitive phenotype of the vaccine.

9. The vaccine of claim 4 wherein the 3' leader region of the HPIV-3 genome is the 3' leader region of the cp45 genome.

10. The vaccine of claim 4 wherein the HPIV-3 phosphoprotein is the phosphoprotein of cp45.

11. The vaccine of claim 4 wherein the HPIV-3 matrix protein is the matrix protein of cp45.

12. The vaccine of claim 4 wherein the 3' leader region of the HPIV-3 genome is the 3' leader region of the cp45 genome and the HPIV-3 NP, P(+C), and M proteins are cp45 NP, P(+C) and M proteins.

13. The vaccine as set forth in claim 4 wherein the target virus is a HPIV-1 virus.

14. The vaccine as set forth in claim 4 wherein the target virus is a HPIV-2 virus.

15. The vaccine as set forth in claim 4 wherein the target virus is a RSV virus.

16. The vaccine as set forth in claim 4 wherein the RSV target virus is an non-animal animal virus.

17. A live, attenuated human vaccine comprising genome which comprises, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of the cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, (M), of cp45; (v) a nucleic acid sequence which encodes both surface antigens of a target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV; and (vi) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the wild-type HPIV-3 (JS) L protein, the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1; the variant L protein attenuating replication of the virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C.; and

18. The vaccine as set forth in claim 17 wherein the substitutions in amino acid sequence of the variant L protein relative to the further comprise the substitution of Phe for Leu at residue 992 of SEQ ID NO:1 and Ile for Thr at residue 1558 of SEQ ID NO:1.

19. The vaccine as set forth in claim 17 wherein the variant L protein is the cp45 L protein.

20. The vaccine as set forth in claim 17 wherein the viral genome further comprises non-coding intergenic regions.

21. The vaccine as set forth in claim 17 wherein the target virus is a HPIV-1 virus.

22. The vaccine as set forth in claim 17 wherein the target virus is a HPIV-2 virus.

23. The vaccine as set forth in claim 17 wherein the target virus is a RSV virus.

24. A hybrid virus comprising an enveloped, negative-sense, single-stranded chimeric RNA genome, the genome including, in succession from its 3' end: of the 3' leader region of cp45 viral genome; of cp45; cp45; cp45; enveloped, negative-sense, single-stranded RNA target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV; and L, the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1, the variant L protein attenuating replication of the virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C.

25. The virus as set forth in claim 24 wherein the substitutions in amino acid sequence of the variant L protein further comprise the substitution of Ile for Thr at residue 1558 of SEQ ID NO:1.

26. The hybrid virus of claim 24 wherein the variant L protein is associated with a temperature sensitive phenotype of the vaccine.

27. The hybrid virus as set forth in claim 24 wherein the RSV target virus is an non-human animal virus.

28. The hybrid virus as set forth in claim 24 wherein the variant L protein is the cp45 L protein.

29. The hybrid virus of claim 24 wherein the target virus is a HPIV-1 virus.

30. The hybrid virus of claim 24 wherein the target virus is a HPIV-2 virus.

31. The hybrid virus of claim 24 wherein the target virus is a RSV virus.

32. A hybrid virus comprising an enveloped, negative-sense, single-stranded chimeric RNA genome, the genome including, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, (M), of cp45; (v) a nucleic acid sequence which encodes each surface antigen of an enveloped, negative-sense, single-stranded RNA target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV; and (vi) a nucleic acid sequence which encodes the large protein, L, of cp45.

33. The hybrid virus of claim 32 wherein the target virus is a HPIV-1 virus.

34. The hybrid virus of claim 32 wherein the target virus is a HPIV-2 virus.

35. The hybrid virus of claim 32 wherein the target virus is a RSV virus.

36. The hybrid virus of claim 32 wherein the RSV target virus is an non-human animal virus.

37. A method for producing an enveloped, negative-sense, single-stranded RNA virus, the method comprising: chimeric genome, the genome including (i) a nucleic acid sequence which encodes each surface antigen of an enveloped, negative-sense, single-stranded RNA target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV, and (ii) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having at least two substitutions in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1, and having an RNA polymerase activity which is at least about 10 times less than the polymerase activity of the target virus at a temperature of about 39.degree. C.; proteins;

38. The method as set forth in claim 37 wherein the substitutions in amino acid sequence of the variant L protein further comprise the substitution of Ile for Thr at residue 1558 of SEQ ID NO:1.

39. The method as set forth in claim 37 wherein the genome further includes: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of a cp45 viral genome, (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of cp45, (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of cp45, (iv) a nucleic acid sequence which encodes the matrix protein, (M), of cp45.

40. The method as set forth in claim 37 wherein the genome is a positive-sense or negative-sense genome.

41. A plasmid vector comprising a chimeric RNA genome which includes (i) a nucleic acid sequence which encodes each surface antigen of an enveloped, negative-sense, single-strand RNA target virus selected from the group consisting of HPIV-1, HPIV-2 and RSV, and (ii) a nucleic acid sequence which encodes a HPIV-3 large protein, L, the variant L protein having at least two substitutions in amino acid sequence relative to the L protein of wild-type HPIV-3 (JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1, and having an RNA polymerase activity which is at least about 10% less than the polymerase activity of the target virus at a temperature of about 39.degree. C., the sense of the genome being either positive or negative.

42. A host cell transfected with the plasmid vector set forth in claim 41.

43. A method for determining whether an enveloped, negative-sense, single-stranded RNA virus having a genome which encodes a HPIV-3 large protein, L is attenuated, the method comprising confirming the presence of at least one variation in the genome of the virus relative to the genome of wild-type HPIV-3 (JS), the variations being in the region of the genome which encodes the L protein and effecting at least one substitution in the L-Protein of the virus relative to the L-protein of wild-type HPIV-3(JS), the substitution being selected from the group consisting of His for Tyr at residue 942 of SEQ ID NO:1, and Phe for Leu at residue 992 of SEQ ID NO:1 and Ile for Thr at residue 1558 of SEQ ID NO:1.

44. The method of claim 43 wherein the virus is a HPIV-3 virus.

45. The method of claim 43 wherein the virus is a progeny virus of an enveloped, negative-sense, single-stranded RNA parent virus, the parent virus having a genome which comprises, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of the cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, (M), of cp45; (v) a nucleic acid sequence which encodes each surface antigen of an enveloped target virus, each surface antigen being different from the surface antigens of cp45 and (vi) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the wild-type HPIV-3 (JS) L protein, the substitutions being His for Tyr at residue 942 of SEC ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO: 1, the variant L protein attenuating replication of the parent virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C.

46. The method of claim 43 wherein at least two substitutions are effected in the L-protein of the virus relative to the L-protein of wild-type HPIV-3(JS), the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO:1.

47. The method of claim 43 wherein the substitutions effected in the L-protein of the virus relative to the L-protein of wild-type HPIV-3(JS) include His for Tyr at residue 942 of SEQ ID NO:1, Phe for Leu at residue 992 of SEQ ID NO:1, and Ile for Thr at residue 1558 of SEQ ID NO:1.

48. The method of claim 43 wherein the virus is cp45.

49. A method for determining whether an enveloped, negative-sense, single-stranded RNA virus having a genome which encodes a HPIV-3 large protein, L, is attenuated, the method comprising virus present in the sample; expresses L protein of a wild-type HPIV-3 virus; determine the number of virus present in the complemented sample; and whether the virus is attenuated.

50. The method of claim 49 further comprising cotransfecting the host cell with a plasmid vector that expresses P protein of wild-type HPIV-3.

51. The method of claim 49 further comprising cotransfecting the host cell with a plasmid vector that expresses NP protein of wild-type HPIV-3.

52. The method of claim 49 wherein the virus is a HPIV-3 virus.

53. The method of claim 49 wherein the virus is a progeny virus of an enveloped, negative-sense, single-stranded RNA parent virus, the parent virus having a genome which comprises, in succession from its 3' end: (i) a nucleic acid sequence which is the same as the nucleic acid sequence of the 3' leader region of the cp45 viral genome; (ii) a nucleic acid sequence which encodes the nucleocapsid protein, (NP), of cp45; (iii) a nucleic acid sequence which encodes the phosphoprotein, P(+C), of cp45; (iv) a nucleic acid sequence which encodes the matrix protein, (M), of cp45; (v) a nucleic acid sequence which encodes each surface antigen of an enveloped target virus, each surface antigen being different from the surface antigens of cp45 and (vi) a nucleic acid sequence which encodes a variant HPIV-3 large protein, L, the variant L protein having polymerase activity and having at least two substitutions in amino acid sequence relative to the wild-type HPIV-3 (JS) L protein, the substitutions being His for Tyr at residue 942 of SEQ ID NO:1 and Phe for Leu at residue 992 of SEQ ID NO: 1, the variant L protein attenuating replication of the parent virus relative to the target virus by a factor of at least about 10 as determined by virus-yield assay at 39.degree. C.

54. The method of claim 49 wherein the virus is cp45.

55. The virus of claim 1 wherein the variant L protein is the cp45 L protein.