# Patent

## Title
Adhesin-enterotoxin chimera based immunongenic composition against enterotoxigenic Escherichia coli

## Abstract

The inventive subject matter relates to an immunogenic composition composed of a chimeric molecule including a conformationally stable adhesin from Escherichia coli fused to a bacterial toxin A subunit, such as cholera toxin A subunit or heat-labile Escherichia coli toxin A subunit. The invention also relates to the adhesin-toxin chimera noncovalently associated with a toxin B subunit of the same or different species as the A subunit. The invention also relates to a method of utilizing an adhesin/toxin fusion composition to elicit an immune response.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is the national stage application of International Application No. PCT/US2007/000712, filed Jan. 11, 2007, and claims priority to U.S. Provisional Application No. 60/758,099 filed Jan. 11, 2006. The disclosures of these applications are incorporated by reference herein.
The disclosure of U.S. application Ser. No. 11/340,003, filed Jan. 10, 2006 is incorporated by reference herein.


PARTIES TO A JOINT RESEARCH AGREEMENT
The invention claimed herein was made by or on behalf of the United States of America as Represented by Secretary of the Navy and The Regents of The University of Colorado, a body corporate, who were parties to a joint research agreement.


SEQUENCE LISTING
I hereby state that the information recorded in computer readable form is identical to the written sequence listing.
FIELD OF INVENTION
The inventive subject matter relates to a method of inducing an immune response against enterotoxigenic Escherichia coli using a proteinaceous chimera molecule composed of bacterial fimbriae components and immunogenic bacterial toxins. The inventive composition contemplates Escherichia coli adhesin molecularly fused to diarrheagenic bacteria toxin yielding an adhesin-toxoid chimera.
BACKGROUND OF INVENTION
Enterotoxigenic Escherichia coli (ETEC), one of several pathotypes of diarrheagenic E. coli, causes a secretory-type diarrhea ranging from mild to cholera-like purging. ETEC poses an important medical concern to persons living in and travelers visiting many developing countries. ETEC is a principal cause of diarrhea in young children in resource-limited countries and also travelers to these areas (Black, 1990; Huilan, et al, 1991). Among infants and young children, the organism is estimated to cause 210 million cases of diarrhea and 380,000 deaths annually (Qadri, et al, 2005).
ETEC produce disease by adherence to small intestinal epithelial cells and expression of a heat-labile (LTI) and/or heat-stable (ST) enterotoxin (Nataro, et al, 1990). ETEC typically attach to host cells via filamentous bacterial surface structures known as colonization factors (CFs). More than 20 different CFs have been described, a minority of which have been unequivocally incriminated in pathogenesis (Gaastra and Svennerholm, 1996).
Firm evidence for a pathogenic role exists for colonization factor antigen I (CFA/I), the first human-specific ETEC CF to be described. CFA/I is the archetype of a family of eight ETEC fimbriae that share genetic and biochemical features (Evans, et al, 1975; Gaastra and Svennerholm, 1996; Grewal, et al, 1997; Khalil, et al, 2000). This family includes coli surface antigen 1 (CS1), CS2, CS4, CS14, CS17, CS19 and putative colonization factor O71 (PCFO71). The complete DNA sequences of the gene clusters encoding all eight members of this fimbrial family have been published (Froehlich, et al, 1994; Froehlich, 1995; Jordi, et al, 1992; Perez-Casal, et al, 1990; Scott, et al, 1992). The four-gene bioassembly operons of CFA/I and related fimbriae are similarly organized, encoding (in order) a periplasmic chaperone, major fimbrial subunit, outer membrane usher protein, and minor fimbrial subunit. CFA/I assembly takes place through the alternate chaperone pathway, distinct from the classic chaperone-usher pathway of type I fimbrial formation and that of other filamentous structures such as type IV pili (Ramer, et al, 2002; Soto and Hultgren, 1999). Based on the primary sequence of the major fimbrial subunit, CFA/I and related fimbriae have been grouped as Class 5 fimbriae (Low, et al, 1996).
Studies of CS1 have yielded details on the composition and functional features of Class 5 fimbriae (Sakellaris and Scott, 1998). The CS1 fimbrial stalk consists of repeating CooA major subunits. The CooD minor subunit is allegedly localized to the fimbrial-tip, comprising an extremely small proportion of the fimbrial mass, and is required for initiation of fimbrial formation (Sakellaris, et al, 1999). Contrary to earlier evidence suggesting that the major subunit mediates binding (Buhler, et al, 1991), recent findings, therefore, have implicated the minor subunit as responsible for fimbria-mediated adhesion and identified specific amino acid residues required for in vitro adhesion of CS1 and CFA/I fimbriae (Sakellaris, et al, 1999). The major subunits are responsible for serological distinctiveness of each fimbrae with the minor subunits (Gaastra, et al, 2002).
Comparative evolutionary analyses of Class 5 major and minor subunits demonstrate that greater structural conservation exists among the minor subunits as compared to the major subunits. This is consistent with ability of anti-minor subunit but not anti-major subunit or fimbrial antibodies to inhibit mannose-resistant hemagglutination (MRHA) of ETEC that express heterologous, subclass-related fimbriae (Anantha, et al, 2004).
Prior research efforts in uropathogenic E. coli strains, containing Type 1 and P fimbriae, have been used as models to elucidate the mechanisms of assembly of pili on these strains of bacteria. These studies showed that assembly in uropathogenic E. coli is effected via a chaperone-usher pathway (Kuehn, et al, 1992; Sauer, et al, 1999; Choudhury, et al, 1999). An outcome of this work has been development of the principle of donor strand complementation, a process in which fimbrial subunits non-covalently interlock with adjoining subunits by iterative inter-subunit sharing of a critical, missing β-strand (Sauer, et al 1999; Choudhury, et al 1999; Barnhart, et al, 2000). Evidence has implicated this same mechanism in the folding and quaternary conformational integrity of Haemophilus influenzae hemagglutinating pili (Krasan, et al, 2000), and Yersinia pestis capsular protein, a non-fimbrial protein polymer (Zavialov, et al, 2002). Both of these structures are distant Class I relatives of Type 1 and P fimbriae that are assembled by the classical chaperone-usher pathway.
Despite the efforts in uropathogenic E. coli, the identity of the adhesion moieties and the mechanism of fimbriae assembly in ETEC have been unclear. That the fimbrial assembly and structural components of these distinct pathways share no sequence similarity suggests that they have arisen through convergent evolutionary paths. Nevertheless, computational analyses of the CFA/I structural subunits suggest the possibility that donor strand complementation may also govern chaperone-subunit and subunit-subunit interaction.
The eight ETEC Class 5 fimbriae clustered into three subclasses of three (CFA/I, CS4, and CS14), four (CS1, PCFO71, CS17 and CS19), and one (CS2) member(s) (referred to as subclasses 5a, 5b, and 5c, respectively) (Anantha, et al, 2004). Previous reports demonstrated that ETEC bearing CFA/I, CS2, CS4, CS14 and CS19 manifest adherence to cultured Caco-2 cells (Grewal, et al, 1997; Viboud, et al, 1996). However, conflicting data have been published regarding which of the component subunits of CFA/I and CS1 mediate adherence (Buhler, et al, 1991; Sakellaris, et al, 1999).
This question of which fimbrial components is responsible for mediating adherence was approached by assessing the adherence-inhibition activity of antibodies to intact CFA/I fimbriae, CfaB (major subunit), and to non-overlapping amino-terminal (residues 23-211) and carboxy-terminal (residues 212-360) halves of CfaE (minor subunit) in two different in vitro adherence models (Anantha, et al, 2004). It was demonstrated that the most important domain for CFA/I adherence resides in the amino-terminal half of the adhesin CfaE.
The studies briefly described above provide evidence that the minor subunits of CFA/I, as well as the homologous subunits of other Class 5 fimbriae, are the receptor binding moiety (Sakellaris, et al, 1999; Anantha, et al, 2004). Consistent with these observations, because of the low levels of sequence divergence of the minor subunits observed within fimbrial subclasses 5a and 5b (Sakellaris, et al, 1999), the evolutionary relationships correlated with cross-reactivity of antibodies against the amino-terminal half of minor subunits representing each of these two subclasses (Anantha, et al, 2004).
Similar, but distinct from Class 5 fimbriae, coli surface antigen (CS3) represents the common adhesive fibrillae of the ETEC colonization factor antigen II (CFA/II) complex. ETEC expressing these antigens are prevalent in many parts of the world. CS3 is composed of two subunits, CstH and CstG. Furthermore, anti-sera against CstH, but not CstG, exhibited hemagglutination inhibition, suggesting that the CstH was the CS3 adhesin.
The CS3 fibrillar assembly has been classified as a member of the classical chaperone-usher (CU) pathway based on the genetic relatedness of the CS3 periplasmic chaperone to the PapD superfamily (Hung, et al, 1999). Interestingly, it falls into the FGL (F1-G1 long) subfamily, referring to a characteristic structural feature of the chaperone, which mediates assembly of thin fibrillar or afimbrial adhesive organelles (Soto and Hultgren, 1996). Alignment of the N-terminal amino acid span of CstH with Yersinia pestis F1 capsule subunit reveals a common motif of alternating hydrophobic residues through amino acid 16 (with reference to the mature CstH polypeptide). This span of the F1 capsular subunit (Caf1) functions as the donor strand, interacting with the Caf1M chaperone and neighboring F1 protein subunits during capsular assembly and subunit articulation (Zavialov, et al, 2003). Therefore, it is logically reasoned that CstH may function in a similar manner.
Cholera toxin (CT) and E. coli enterotoxins (LTI and LTII) are members of the heat-labile enterotoxin family (Hirst, 1999; Holmes, 1997; Jobling and Holmes, 2005). They act on enterocytes of the small intestine and cause secretory diarrhea. Each toxin consists of a single A polypeptide and five identical B polypeptides all attached by noncovalent interactions. The known variants of CT and LTI belong to serogroup I and variants of LTII to serogroup II.
Structures of CT, LTI and LTIIb show that all have closely related folding patterns, despite differences in amino acid sequences between the B polypeptides of toxins in serogroups I and II (Domenighini, et al, 1995). The five identical B polypeptides form a doughnut-shaped module. The A polypeptide has an A1 domain located next to the upper face of the B subunit and an A2 domain that penetrates the central pore of the B pentamer. A1 and A2 are joined by a short surface-exposed loop. Proteolytic cleavage within that loop generates nicked holotoxin, with fragments A1 and A2 remaining linked by a disulfide bond. Five identical binding sites on the lower face of the B pentamer interact with specific receptors on target cells. The receptor-binding specificities among the enterotoxins differ greatly. CT and LTI bind tightly to ganglioside GM1. LTI, but not CT, binds to asialoganglioside GM1 and certain glycoproteins, and LTIIa and LTIIb bind best to gangliosides GD1b and GD1a, respectively.
The activity of enterotoxins on cells, such as epithelial cells upon colonization by ETEC, is mediated by an intricate sequence of events (Hirst, 1999; Holmes, 1997; Jobling and Holmes, 2005; Spangler, 1992). Upon colonization, ETEC heat-stable (ST) and/or heat-labile (LTI) enterotoxin act upon epithelial cells. In addition to LTI, ETEC heat-stable enterotoxin (ST) is a nonimmunogenic peptide analog of the intestinal peptide guanylin that activates intestinal membrane-bound guanylate cyclase (Schulz, et al, 1997).
Seroepidemiologic studies of young children has shown an inverse correlation between serum anti-CFA/I IgG antibody levels and a risk of disease with CFA/1-ETEC (Rao, et al, 2005). However, studies have failed to demonstrate that anti-LTI antibodies are protective. Evidence exists that administration of the B subunit of CT (CT-B) confers significant protection against ETEC caused diarrhea, which express the antigenically similar LTI enterotoxin (Clemens, et al, 1988; Peltola, et al, 1991). Furthermore, animal challenge studies have suggested that anti-fimbrial and anti-LTI antibodies act synergistically to protect against ETEC challenge (Ahren and Svennerholm, 1982).
Because of the promising immune responses to CFA/I and other coli surface antigens with nontoxic forms of LTI or CT, these antigens have been the focus of mucosal vaccine formulations against ETEC (Holmgren and Czerkinsky, 2005). An oral, killed whole-cell ETEC vaccine co-administered with CT-B has been extensively tested (Savarino, et al, 1999; Svennerholm, et al, 1997). Although the vaccine was found to be safe, it was not efficacious in infants (Savarino, et al, 2003). Furthermore, live attenuated ETEC vaccines have not proven effective partly due to the lack of achieving a proper balance between attenuation and immunogenicity (Altboum, et al, 2003; Barry, et al, 2003; Levine, et al, 1984; Turner, et al, 2001). Therefore, the importance of identification of the fimbrial component that might more effectively induce anti-adhesive immunity has become ever more acute. In ETEC, this moiety has been shown to be the minor fimbrial subunits, such as CfaE. Therefore, an aspect of this invention is the construction and use of conformationally stable ETEC fimbrial adhesins or adhesin domains in conjunction with components of bacterial toxoids, such as CT or LT, to induce immunity against diarreheagenic ETEC.
SUMMARY OF THE INVENTION
Enterotoxigenic Escherichia coli (ETEC) are one of several important pathotypes of E. coli and one of the most important of the diarrheagenic E. coli strains. The organisms cause a secretory-type diarrhea ranging from mild to cholera-like purging. Currently, no efficacious vaccine exists against ETEC. Therefore, new vaccine formulations against these organisms are critical, especially for developing countries where diarrheal diseases are most prevalent and medical infrastructure is limited.
An object of the invention is a composition comprising a conformationally-stable and protease resistant adhesin polypeptide-toxin fusion constructs for use in vaccine formulations. The contemplated fusion construct contains any bacterial toxin A subunit. Additionally, a contemplated version contains the A subunit, contained in the fusion product, in noncovalent association with a toxin B subunit of the same or different toxin. The composition is useful for the induction of an immune response against Escherichia coli. Examples of toxins include cholera toxin and enterotoxigenic Escherichia coli heat-labile enterotoxin.
A further object of the invention is a conformationally-stable and protease resistant adhesin polypeptide-bacterial toxin A subunit fusion construct, with or without noncovalent association with a toxin B subunit, wherein the toxin A an B subunits are derived from cholera toxin or E. coli heat-labile toxin.
A still further object of the invention is a method of inducing an immune response against Escherichia coli fimbriae or Escherichia coli, including Class 5 E. coli and E. coli CS3 fibrillae, by administration of a chimeric molecule or mixture of chimeric molecules, each composed of a stabilized ETEC adhesin polypeptide genetically fused to component of a bacterial toxoid, such as from cholera or ETEC heat-labile toxin, that exhibits immunomodulatory and adjuvant effects.
An additional object is the prevention of colonization of Escherichia coli by inhibiting adherence of ETEC fimbriae or fibrillae to host cells.
A further, additional object is the induction of an antibody immune response against enterotoxin by the by administration of a chimeric molecule or mixture of chimeric molecules, each composed of a stabilized ETEC adhesin polypeptide genetically fused to component of a bacterial toxoid, such as from cholera or ETEC heat-labile toxin.
These and other objects of the invention are accomplished by employing Escherichia coli adhesin polypeptides as a vaccine component to induce immunity.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1. Maps of plasmid inserts that encode the adhesin-entertoxoid chimeras. From top to bottom of the figure: T7-based clone from which the dscCfaE gene was amplified in the construction of the two following plasmid inserts; pBAD-based clone for dscCfaE-CTA2/CTB5 chimera expression; pBAD-based done for dscCfaE-CTA2/LTB5 chimera expression; and the planned inserts for expression of chimera proteins in which the CfaE adhesin domain (CfaEad) constitutes the adhesin component.
FIG. 2. Maps of two chimera expression plasmids. (A) Plasmid p0809C3 was constructed and used for production of the dscCfaE-CTA2/CTB5 chimera, and (B) p1121C1 was constructed and used for production of the dscCfaE-CTA2/LTB5 chimera. Each features a p15A origin of replication, chloramphenicol resistance marker (cat), and an arabinose-inducible promoter (pBAD) upstream of the tandem genes encoding eh adhesin-CTA2 fusion and B-enterotoxoid.
FIG. 3. Inhibition of CFA/I ETEC-induced MRHA.
FIG. 4. Murine serum IgG responses to CfaE after immunization with CfaE-CTA2/CTB chimera.
FIG. 5. Mouse serum IgG response to CfaE after intranasal immunization with CfaE-CTA2/CTB chimera.
FIG. 6. Mouse serum IgA responses to CfaE after intranasal immunization with CfaE, an admixture of CfaE plus CTB or CfaE-CTA2/CTB.
FIG. 7. Two-step purification of CfaE-CTA/CTB chimera by (A) Talon chromatography followed by (B) gel filtration.
FIG. 8. Binding of chimera to immobilized GM1.



DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS
Design and Construction of Adhesin-Toxin Chimeras
The present invention relates to methods and a biological composition for the induction of anti-adhesive immune responses by the administration of conformationally stable, and thus immunologically active, adhesin polypeptide. Adhesins contemplated in the inventive composition include, but are not limited to, those from Class 5 fimbriae and from CS 3 (i.e., CstH). Adhesin, the distal molecular component of enterotoxigenic Escherichia coli fimbriae and fibrillae, are the likely effectors for bacterial attachment to host cells (Anantha, et al, 2004). Therefore, adhesins are critical for bacterial colonization and pathogenicity.
Polypeptide sequences from a number of pathogenic bacterial species, such as LT or CT, have been shown to be potent immunomodulators. Furthermore, CT B-subunit (CTB) confers significant protection against ETEC caused diarrhea (Clemens, et al, 1988; Peltola, et al, 1991). Consequently, concomitant administration of adhesin with bacterial toxin may provide greater protective immunity against diarrheagenic bacteria than formulations containing other ETEC moieties. The current invention provides a composition and method of using said composition for the induction of immunity, principally immunoglobulin-mediated, that specifically binds to bacterial adhesin to disrupt colonization of diarrheagenic bacteria by inhibiting activity of the bacterial adhesin and decreases the contribution of heat-labile entertoxins to diarrhea both by inhibiting activity of heat-labile enterotoxin and as a secondary effect of preventing bacterial colonization and thereby decreasing production of both heat-labile and heat-stable enterotoxins, in vivo.
Conformational stability, and potentially protease resistance of adhesin polypeptides is important to ensure maximum immunogenicity. Conformational integrity of adhesin monomers is conferred by a donated β-strand provided by an adjacent subunit. In Class 5 fimbriae, for example, conformational stability of the CFA/I adhesin, CfaE, is provided by the donor β-strand from CfaB. In CS3, stability can also be provided by peptide donor strands from adjacent monomers. In this regard, CstH donor strand provides stability to adjacent CstH adhesin monomers.
An aspect of the invention is a chimeric molecule with conferred conformational stability of an adhesin polypeptide in juxtaposition with bacterial toxins subunits, such as from LT or CT. In order to ensure conformational stability of adhesin polypeptide immunogens, with concomitant improved efficacy of vaccines, an aspect of this invention is polypeptide constructs designed to operatively provide a donor β-strand to adjacent adhesin polypeptide sequences that are operatively fused to toxin protein or polypeptide. The adhesin component of the constructs are composed of adhesin polypeptides linked at the C-terminal end to a linker polypeptide, which is in turn linked, at the C-terminal end, to a donor strand polypeptide. Donor strand can be provided by a number of sources including all or a portion of a major fimbrial structural subunit, such as CfaB. The adhesin component is then genetically fused to a polypeptide derived from a bacterial toxin A subunit. The inventive chimera can also be expressed in conjunction with the toxin B subunit, such that the expressed chimera containing the toxin A subunit component then assemble with the toxin B subunits to form a chimeric enterotoxin-like molecule.
The inventive composition contemplates a composition that is composed of any adhesin polypeptide, such as CfaE, CsfD, CsuD, CooD, CosD, CsdD, CsbD, CotD and CstH. The adhesin is then fused at the C-terminal end of adhesin to a donor strand via a linker polypeptide. The donor strand can come from any number of sources including major fimbrial subunits such as CfaB, CsfA, CsuA1, CsuA2, CooA, CosA, CsbA, CsdA, CotA and CstH. Such conformationally stabilized adhesin are herein described with the prefix “dsc.” The inventive composition further contemplates that the conformationally stabilized adhesin is in-turn fused with a bacterial toxin A subunit, as illustrated in FIG. 1. An additional extension of the inventive composition contemplates the use of only the N-terminal domain of the native adhesin structure as the stable adhesin component of the inventive composition. Such conformationally stable adhesin domains are herein described with the suffix “ad”, and without the prefix “dsc.”
Examples of conformationally stabilized adhesin include, but are not limited to, dscCfaE (SEQ ID No. 6); dscCsbD (SEQ ID No. 12); dscCotD (SEQ ID No. 15), which contain a donor strand from CfaB, CotA and CotD, respectively. Additionally, non-Class 5 fimbrae adhesins can be used, such as CstH by fusing the leader sequence (SEQ ID No. 27) to the N-terminal region of CstH (SEQ ID No. 28) and fusing this, via a linker (SEQ ID No. 1), to a donor strand from CstH (SEQ ID No. 29). The stable, dscCstH, sequence is illustrated in SEQ ID No. 30.
The conformationally stable adhesin is then fused to a full-length or truncated A2 bacterial toxin A subunit. The inventive composition contemplates that any of a number of bacterial toxin A subunits can be used. Examples of A subunits include, but are not limited to LTA2 (SEQ ID No. 18) and CTA2 (SEQ ID No. 19). Additionally, the inventive composition contemplates the ability to coordinately and concomitantly express the stabilized adhesin-toxin A subunit chimera with a toxin B subunit, either under a single operon, as illustrated in FIG. 2 or as gene products expressed from separate promoters either on a single plasmid or on separate but compatible plasmids, such that the adhesin-toxin A subunit and B subunits can spontaneously molecularly interact and assemble into an toxin-like molecule. The A and B subunits can be from the same or different bacterial species. Examples of toxin B subunits include, but are not limited to CTB (SEQ ID No. 21) and LTB (SEQ ID No. 23). The B subunit can contain an LTIIb leader sequence (SEQ ID No. 24) for improved expression as in SEQ ID No. 20 and SEQ ID No. 22, for CTB and LTB, respectively. Furthermore, the N-terminal five (5) amino acids of either CTA2 or LTA2 can be substituted for the amino acid sequences of SEQ ID Nos. 25 and 26. Table 1 summarizes the sequences.








TABLE 1





SEQ ID number
Description







1-3
Linkers


4
CfaE


5
CfaB donor strand


6
dscCfaE


7
CfaEad


8
Signal sequence of dscCfaE (LTIIb)


9
dscCfaE (with aa subst from K to N)


10
dscCfaE (with aa subst from K to S)


11
dscCfaE (with aa subst from K to T)


12
dscCsbD


13
CsbDad


14
Signal sequence for CsbD (LTIIb)


15
dscCotD


16
CotDad


17
Signal sequence for CotD (LTIIb)


18
LTIA2 polypeptide


19
CTA2 polypeptide


20
CTB polypeptide with leader


21
CTB polypeptide with no leader


22
LTIB polypeptide with leader


23
LTIB polypeptide with no leader


24
LTIIb signal sequence


25
Variant 1 of N-terminal region of LTIA2 or CTA2


26
Variant 2 of N-terminal region of LTIA2 or CTA2


27
CstH signal peptide


28
CstH


29
CstH donor strand


30
dscCstH


31
LTIA2-variant


32
LTIA2-C199S


33
CTB El tor


34
CTA2 trucated


35
LTIA2 Truncated









EXAMPLE 1
Construction of dscCfaE-CT and LT Chimeras
In order to more fully illustrate the invention, an example of an anti-ETEC composition containing CfaE, the minor subunit of CFA/I, is described. Referring to FIG. 1 (A), a conformationally stable CfaE was constructed by genetically joining a hairpin linker to the 3′ end of the coding sequence of CfaE. The amino acid sequence of the linkers is described by SEQ ID No. 1, 2 and 3. An amino acid donor strand from CfaB, described in SEQ ID No. 5, was then joined at the 3′ end of the linker and finally a hexahistidine tag was joined at the 3′ end of the CfaB donor strand. The construct was then inserted in pET24 plasmids and expressed in E. coli bacteria. The resultant polypeptide, referred to as dscCfaE, was purified by nickel or cobalt affinity and cation-exchange chromatography. The recombinant polypeptide was soluble and stable. Based on gel filtration, the dscCfaE polypeptide existed as a monomer and CD spectroscopic analysis yielded results consistent with the existence of a predominantly β-stranded molecule.
Referring to FIG. 1, the A2 fragment of the cholera toxin A subunit was genetically fused to the carboxyl-terminus (C-terminus) dscCfaE. It should be noted, however, that instead of the A2 fragment of CTA, the A2 fragment, from the A subunit of other toxins can be used, such as LT-I. In order to facilitate purification of the monomeric dscCfaE, a Histidine (His-6) tail was added to the C-terminus of dscCfaE. See FIG. 1A). However, in order to facilitate purification of chimera with minimal modification of native sequence, in other constructs, His was substituted at selected sites within the toxin sequences of LT. However, because the pentameric B subunit of CT binds spontaneously to nickel or cobalt, either the CTB pentamer alone or an antigen construct that contains both a chimeric adhesin-CTA2 fusion polypeptide and the CTB pentamer can be purified directly by nickel or cobalt affinity chromatography without the need to add His-6 tag either to the adhesin-CTA2 fusion polypeptide or to the CTB polypeptide. Therefore, the coding region for the His-6 tag in dscCfaE was not included in the construct shown in FIG. 1B. Unlike pentameric CTB, the pentameric B subunit of LT-I does not bind spontaneously either to nickel or cobalt containing resins. However, introducing R13H and N94H substitutions into the sequence of the mature LT-1B polypeptide enables pentameric LT-1 B (or a corresponding antigen construct containing both a chimeric adhesin-CTA2 fusion polypeptide and the LT-IB pentamer) (the reader is referred to FIG. 1C) to bind to nickel or cobalt-containing resins and to be purified by nickel or cobalt affinity chromatography.
Furthermore, since the adhesin domain is stabilized by two intradomain disulfide bridges, placement of a stop codon after CfaE residue 199 to 204 results in production of a stable one-domain adhesin that lacks the pilus-forming domain of the original two-domain two-domain adhesin. Adhesin monomer with a stop codon introduced at this point contains the suffix “ad”, for example CfaEad (SEQ ID. No. 7); CsbDad (SEQ ID. No. 13) and CotDad (SEQ ID No. 16). The coding sequence for the corresponding stable one-domain adhesin can therefore be used in place of the coding sequence for the stable two-domain dsc-adhesin variant to produce antigen constructs in which the adhesin-ad-CTA2 fusion polypeptide replaces the dsc-adhesin-CTA2 fusion polypeptide described above (see FIGS. 1D and 1E).
Referring to FIG. 1, when the coding regions for an adhesin-CTA2 fusion protein and a bacterial toxin B subunit are both present within an operon in the expression plasmid the adhesin-toxin A subunit chimera as well as a toxin B subunit are produced concomitantly. This permits both the expressed A and B toxin subunit polypeptides to be secreted into the periplasm of the E. coli host cell and to assemble spontaneously in the periplasm to form the desired chimeric enterotoxin-like antigen. The A and B subunits can be from the same or different bacterial species. As a further illustration, FIGS. 2A and 2B show a maps of a plasmids encoding a chimera constructs that contain the pentameric B subunits from CT and from LT-1, respectively.
FIG. 1 shows a dscCfaE-CTA2 fusion that is coordinately expressed with either the B subunit of cholera toxin or E. coli LT. The addition of LTIIB signal sequence enhances the likely expression of recombinant products since recombinant LTIIb is produced at a level of almost 100-fold over recombinant CT or CTB. In order to facilitate construction of CT-like chimeras, the expression vectors were modified by adding the coding region for CTA2 immediately downstream and in frame with the adhesin gene sequence so that the protein of interest is not only secreted into the periplasm but also contains the A2 polypeptide of CT at its C-terminus.
The coding sequence for dscCfaE was cloned in-frame into two vectors for expression of an A1 replacement antigen with an N-terminal LTIIb-B signal sequence and a C-terminal A2 fusion, upstream from the cholera toxin B subunit gene. The pLDR5 and pARLDR19 vectors place the modified cholera toxin operon under the control of a lac promoter or an arabinose-inducible pBAD promoter. (p0809C3), respectively. These clones were transformed into appropriate E. coli strains for expression. Both constructs produced chimera in the periplasm when grown in rich medium under inducing conditions.
After induction, cells were treated with polymyxin B to release periplasmic contents and the soluble fraction was purified by metal affinity chromatography (Dertzbaugh and Cox, 1998). Free CTB pentamer were separated from dscCfaE-CTA2/CTB chimera by gel filtration. Analysis of the chimera by SDS-PAGE and Western blot using antibodies specific for CTA, CTB and CfaE showed an anti-CTB-reactive band and a dscCfaE-CTA2 fusion protein band that reacted with both anti-CTA and anti-CfaE antisera. Referring to FIG. 8, using a 96-well ELISA format with GM1 coated plates and detection with a primary anti-CfaE antibody, we demonstrated that dscCfaE-CTA2/CTB chimeras indeed bound to GM 1.
As a further functional enhancement of expressed product, since the N-terminus of CTA2 occurs at residue 194, the sole cysteine-199 residue was changed in CTA2 to serine in order to prevent any aberrant disulfide bond formation between cysteine-199 and other cysteines in the antigen domain of the antigen-CTA2 fusion protein. Additionally, other vectors can be made, such as pARLDR19, for enhanced production of chimeras under the control of the arabinose-inducible pBAD promoter instead of the lac promoter (Tinker, et al, 2005; Li, et al, 2004).
EXAMPLE 2
Functional Analysis of Chimera Constructs
The constructs were functionally examined. The construct in FIG. 1A or FIG. 1B was adsorbed onto 3 μm latex beads and added to human or bovine red cells with the resultant induction of MRHA. This observation provides clear evidence that CfaE is the adhesin in ETEC.
Crystallographic analysis of dscCfaE at 2.3 Å resolution revealed two elongate domains joined by a loop near its midpoint. Both the N-terminal and C-terminal domains form a β-sheet structure and the donor β-strand from CfaB fills a hydrophobic groove of the C-terminal domain stabilizing the molecule. The adhesin domain is stabilized by two intradomain disulfide bridges. Placement of a stop codon after CfaE residue 199 (refer to FIG. 1C) will yield a stable CfaE adhesion domain (designated CfaE-ad).
The antigenicity and immunogencity of dscCfaE were tested in animal models. Initially two rabbits were immunized parenterally with a four-dose (0, 28, 56 and 84 days) regimen of 250 μg per dose with Freund's adjuvant. Serum drawn 28 days after the last boost exhibited high anti-CfaE titers in each rabbit as measured by CfaE enzyme-linked immunosorbent assay (ELISA). Moreover, in a hemagglutination inhibition (HAI) assay, these antisera inhibited MRHA of ETEC that express CFA/I as well as CS4 and CS14 fimbriae.
A mouse experiment was conducted to determine the relative mucosal immunogenicity of dscCfaE in comparison to CFA/I fimbriae. Groups of 6 mice were given 25 μg of the test antigen either alone or co-administered with 1.5 μg of genetically detoxified LTR192 mucosal adjuvant, intranasally (IN). Another cohort of mice were immunized orogastrically at a dose of 250 μg with or without 10 μg of LTIR 192G. All animals received a 3-dose schedule at 2 week intervals. Robust titers were observed by ELISA when the immobilized antigen was homologous with the antigen used for immunization. In a head-to-head comparison of anti-adhesive antibody levels by the HAI assay, the dscCfaE immunized groups exhibited significantly higher titers of HAI antibody than the corresponding CFA/I immunized groups. Taken together, these animal studies suggest that CfaE is capable of inducing serum antibody responses upon parenteral or mucosal (IN) immunization. Furthermore, the antigen is superior to CFA/I in eliciting functional anti-adhesive antibodies.
Other murine immunization studies were conducted to evaluate the chimera's anitgenicity, specifically its capacity to induce an anti-adhesive antibody response and to evaluate the immunomodulatory properties of the dscCfaE-CTA2/CTB chimera upon IN immunization. In the antigenicity study, three groups of mice (n=3 per group) were immunized intraperitoneally (IP) with a two-dose regimen of dscCfaE-CTA2/CTB chimera, or dscCfaE alone or CTB alone at 0 and 28 days, with approximately 50 μg primary and 25 μg booster dose of the relevant antigen. Serum was collected pre-immunization and 12 days after the booster dose (day 40) and tested for in vitro inhibition of MRHA by incubation of a standard concentration of CFA/I-ETEC (strain H10407) with serial dilutions of antiserum before addition to human red cells and a determination of HAI activity. None of the preimmunization sera showed HAI activity at the minimum dilution tested (1:20) nor did post-immunization sera from CTB immunized mice. In contrast, serum from both the dscCfaE and dscCfaE-CTA2/CTB immunized groups inhibited MRHA at similar dilutions, as illustrated in FIG. 3. These corresponded to high serum anti-CfaE IgG titers as measured by ELISA at day 40 in both groups. The CfaE group geometric mean titer was 423,000 and the dscCfaE-CTA2/CTB group geometric mean titer was 233,000. Therefore, dscCfa-CTA2/CTB chimera effectively presents the adhesin for induction of functional antibody responses.
Referring to FIG. 4, five groups of mice (n=10 per group) were immunized IN at 0, 14, and 28 days with the following antigens: (1) dscCfaE-CTA2B (20 μg total weight calculated to give 8 μg CfaE and 11 μg CTB); (2) dscCfaE (8 μg)+CTB (13 μg) admixed; (3) dscCfaE alone (25 μg); (4) CTB alone (13 μg); and (5) PBS negative control. Serum IgG antibody titers to CfaE and CTB were determined by ELISA at 0, 14, 28 and 42 days. Mouse serum hemagglutination inhibition was examined subsequent to IN administration of CfaE chimeras. As illustrated in FIG. 4, like in FIG. 3, HAI titers were significantly higher than each of the other groups at day 42. Additionally, referring to FIG. 5, all groups receiving CTB in any form exhibited high serum anti-CTB titers by day 42, as expected. The dscCfaE-CTA2/CTB chimera group showed a significantly higher serum IgG anti-CfaE response than either the CfaE+CTB admixture or the dscCfaE groups measured at days 14, 28 and 42.
In addition to IgG, IgA titers were also examined following administration of dscCfaE-CTA2/CTB5. Anti-CfaE titers were measured by ELISA on day 0 and day 42 and are illustrated in FIG. 6. IgA titers at baseline (day 0) were below the limit of detection for all groups in FIG. 5. The result, as illustrated in FIG. 6, shows that the chimera group yielded a significantly higher titer of IgA than the other groups.
EXAMPLE 3
Potential Use of Inventive Chimera in Vaccine Formulations
The adhesins are likely the most important component for the induction of immunity against diarrheagenic E. coli, although preventing the activity of the heat-labile enterotoxin may also contribute to protection. Because the fimbrial adhesins are inherently unstable and subject to degradation when devoid of their non-covalent linkage to adjacent subunits, the current invention significantly improves the immunogenic potential of adhesin by conferring conformational stability. Additionally, the immunogenic efficacy of conformationally stable adhesin is likely improved significantly by providing the adhesin construct as a chimera with enterotoxin components that have both potent immunogenicity and adjuvant activity.
The inventive construct is anticipated to be useful as a vaccine component for the induction of an immune response and/or anti-toxic immunity against diarrheagenic E. coli. The method for induction of immunity contains the following steps:

    
    
        a. priming by administration of immunogen comprising a chimeric polypeptide containing a conformationally stable two-domain or one-domain adhesin fused component fused to an intact or truncated A2 polypeptide derived from a toxin A subunit. The immunogen can also comprise the chimeric polypeptide, assembled into an enterotoxin-like chimera by noncovalent interactions between its intact or truncated A2 polypeptide with the toxin B subunit polypeptides. The toxin A and B subunits can be derived from any bacterial toxins, for example Vibrio cholerae or E. coli heat-labile enterotoxin. The range of a unit dose of immunogen is 50 μg to 1 mg, and can be administered either transcutaneously, such as via dry patches, transdermally, intramuscularly, orally in milk or other solutions, transcutaneously or nasally.
        b. Subsequent to a priming dose, 2 to 4 boosting doses are also administered by similar routes with a unit dose of 50 μg to 1 mg of immunogen.
    
    


An alternative vaccine approach is the administration of a DNA construct, capable of expressing the chimera polypeptides inserted into live attenuated bacterial vectors. Examples of potential vectors include, but are not limited to, members of the genus Vibrio including Vibrio cholerae, Escherichia coli, members of the genus Camplyobacter, members of the genus Salmonella, and members of the genus Shigella. 
EXAMPLE 4
DscCfaE-CTA-2/CTB Chimera Scale Up
In order to produce adequate quantities of adhesin/toxin chimera, the development of a production and purification regimen is disclosed. An example is presented of a preferred production and purification procedure, although other methods can be utilized that ultimately yield stable and immunogenic adhesin/toxin chimeric product.
In this example, the arabinose-inducible vector (p0809C3) was selected and used to transform the E. coli strain BL21, which is Lon and OmpT protease deficient. Starting with 30 g of cell paste, cells were broken using microfluidization. The soluble fraction was subjected to the two step process of Talon resin chromatography and gel filtration by FPLC. After loading and washing the Talon resin, the chimera fraction was eluted with 50 mM imidazole. Referring to FIG. 7, the eluted fractions under the peak were pooled, concentrated and subjected to gel filtration. The gel filtration elution showed a two-hump peak pattern with the two peaks corresponding to chimera (early peak) and a CTB pentamer (late peak) of similar heights. The pooled chimera fractions were analyzed by SDS polyacrylamide gel electrophoresis (PAGE) and Western blot analysis with anti-CTB, anti-CTA and anti-CfaE antiserum.
In order to confirm the functional integrity of the product, the product was tested for its ability to bind to ganglioside GM-1 as illustrated in FIG. 8. ELISA assay was conducted using GM1 immobilized in wells of microtiter plates. In the assay, dscCfaE-CTA2/CTB was exposed to the GM1 immobilized plates and the bound chimera visualized by anti-CfaE antisera. No anti-CfaE reactivity was observed in control experiments when CTB or dscCfaE was allowed to interact with immobilized GM1 in the microtiter plates before probing for bound CfaE antigen with anti-CfaE antiserum. In FIG. 8 a dose response was observed over a chimera concentration range of 0.25 to 2 μg/ml added to GM 1-containing wells. The yield of chimera using this procedure was on the order of 0.05 mg/g of starting cell paste.
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Having described the invention, one of skill in the art will appreciate in the appended claims that many modifications and variations of the present invention are possible in light of the above teachings. It is therefore, to be understood that, within the scope of the appended claims, the invention may be practiced otherwise than as specifically described.

## Claims

1. An immunogenic composition comprising a purified fusion protein, the fusion protein containing an E. coli minor fimbrial adhesin polypeptide or monomer, wherein the fimbrial adhesin polypeptide or monomer is derived from Class 5 fimbriae or CS3 fimbriae and is operatively connected, directly or via a linker and donor strand polypeptide, to a toxin A subunit polypeptide.

2. The immunogenic composition of claim 1, wherein the fimbrial adhesin polypeptide or monomer is operatively connected to the toxin A subunit polypeptide via a linker and donor strand polypeptide, wherein the fimbrial adhesin polypeptide or monomer is connected at its C-terminus to the linker, the linker is connected at its C-terminus to the donor strand, and the donor strand is connected at its C-terminus to the toxin A subunit.

3. The immunogenic composition of claim 1, wherein the fusion protein is noncovalently linked to a toxin B subunit.

4. The immunogenic composition of claim 1, wherein the toxin A subunit is selected from the group consisting of cholera toxin A; cholera toxin A2; E. coli heat-labile toxin A and E. coli heat-labile toxin A2.

5. The immunogenic composition of claim 1, wherein the E. coli fimbrial adhesin polypeptide or monomer is selected from the group consisting of colonization factor antigen I; CS4; CS14; CS1; PCF071; CS17; CS19; CS2 and CS3.

6. The immunogenic composition of claim 5, wherein the E. coli fimbrial adhesin polypeptide or monomer is selected from the group consisting of CfaE, CsfD, CsuD, CooD, CosD, CsdD, CsbD, CotD, and CstH.

7. The immunogenic composition of claim 1, wherein the E. coli fimbrial adhesin polypeptide is a monomer or a polymer of adhesin polypeptides.

8. The immunogenic composition of claim 6, wherein the E. coli fimbrial adhesin polypeptide or monomer has the sequence of SEQ ID NO: 4.

9. The immunogenic composition of claim 1, wherein the linker has an amino acid sequence selected from the group consisting of SEQ ID No. 1; SEQ ID No. 2 and SEQ ID No. 3.

10. The immunogenic composition of claim 1, wherein the donor strand has the amino acid sequence of SEQ ID No. 5.

11. The immunogenic composition of claim 1, wherein the donor strand is an 8 to 20 amino acid polypeptide from E. coli fimbrial major subunit or adhesin monomer selected from the group consisting of CfaB; CsfA; CsuA1; CsuA2; CooA; CosA; CsbA; CsdA; CotA and CstH.

12. The immunogenic composition of claim 1, wherein the fusion protein contains a histidine tag operatively linked to the C-terminus of the donor strand and to the N-terminus of the toxin A subunit polypeptide.

13. The immunogenic composition of claim 1, wherein the fusion protein comprises a polypeptide having a sequence selected from the group consisting of SEQ ID No. 6; SEQ ID No. 7; SEQ ID No. 9; SEQ ID No. 10; SEQ ID No. 11; SEQ ID No. 12; SEQ ID No. 13; SEQ ID No. 15; SEQ ID No. 16 and SEQ ID No. 30.

14. The immunogenic composition of claim 1, wherein the toxin A subunit has the sequence of SEQ ID No. 18 or SEQ ID No. 19.

15. The immunogenic composition of claim 3, wherein the fusion protein or the toxin B subunit is operatively connected at its N-terminus to a signal sequence.

16. The immunogenic composition of claim 3, wherein the toxin B subunit is cholera toxin B or E. coli heat-labile toxin B.

17. The immunogenic composition of claim 3, wherein the fusion protein and the toxin B subunit are expressed from a single expression vector.

18. The immunogenic composition of claim 3, wherein the toxin B subunit has a sequence selected from the group consisting of SEQ ID No. 20; SEQ ID No. 21; SEQ ID No. 22 and SEQ ID No. 23.

19. The immunogenic composition of claim 15, wherein the signal sequence is the LTIIb toxin signal sequence of SEQ ID No. 24.

20. A method of inducing an immune response comprising the steps:
a) administering a priming dose of the composition of claim 1; and
b) administering boosting doses, with a first dose at least 1 week after the priming dose, with a unit dose range of 50 μg to 1 mg of the immunogenic composition in a buffered aqueous solution, wherein an immune response is elicited.

21. The method of claim 20, wherein the fusion protein is noncovalently linked to a toxin B subunit.

22. The method of claim 20, wherein the E. coli fimbrial adhesin polypeptide or monomer is selected from the group consisting of CfaE; CsfD; CsuD; CooD; CosD; CsdD; CsbD; CotD and CstH.

23. The method of claim 20, wherein the fimbrial adhesin polypeptide or monomer is operatively connected to the toxin A subunit polypeptide via a linker and donor strand polypeptide, wherein the fimbrial adhesin polypeptide or monomer is connected at its C-terminus to the linker, the linker is connected at its C-terminus to the donor strand, and the donor strand is connected at its C-terminus to the toxin A subunit.

24. The method of claim 20, wherein the E. coli fimbrial adhesin polypeptide is a monomer or a polymer of adhesin polypeptides.

25. The method of claim 20, wherein the fusion protein comprises a polypeptide having a sequence selected from the group consisting of SEQ ID No. 6; SEQ ID No. 7; SEQ ID No. 9; SEQ ID No. 10; SEQ ID No. 11; SEQ ID No. 12; SEQ ID No. 13; SEQ ID No. 15; SEQ ID No. 16 and SEQ ID No. 30.

26. The method of claim 20, wherein the toxin A subunit is selected from the group consisting of cholera toxin A; cholera toxin A2; E. coli heat-labile toxin A and E. coli heat-labile toxin A2.

27. The method of claim 20, wherein the toxin A subunit has the sequence of SEQ ID No. 18 or SEQ ID No. 19.

28. The method of claim 20, wherein the immune response inhibits enterotoxigenic E. coli fimbriae adherence to human cells.

29. The method of claim 20, wherein the immune response reduces or prevents diarrhea in humans.

30. The method of claim 20, wherein the composition is administered subcutaneously, transdermally, intramuscularly, orally, transcutaneously or nasally.

31. The method of claim 20, wherein the fusion protein is produced by a DNA expression system in a live attenuated bacterial vector prior to administration.

32. The method of claim 21, wherein the toxin B subunit has a sequence selected from the group consisting of SEQ ID No. 20; SEQ ID No. 21; SEQ ID No. 22and SEQ ID No. 23.

33. The method of claim 21, wherein the composition is administered subcutaneously, transdermally, intramuscularly, orally, transcutaneously or nasally.

34. The method of claim 21, wherein the fusion protein is produced by a DNA expression system in a live attenuated bacterial vector prior to administration.

35. The method of claim 21, wherein the immune response inhibits enterotoxigenic E. coli fimbriae adherence to human cells.

36. The method of claim 21, wherein the immune response reduces or prevents diarrhea in humans.

37. The method of claim 23, wherein the donor strand is an 8 to 20 amino acid polypeptide from E. coli fimbrial major subunit or adhesin monomer selected from the group consisting of CfaB; CsfA; CsuA1; CsuA2; CooA; CosA; CsbA; CsdA; CotA and CstH.

38. The method of claim 30, wherein the composition is administered orally by solution or enteric coated granule capsule.

39. The method of claim 30, wherein the composition is administered transcutaneously by a dry patch.

40. The method of claim 31, wherein the bacterial vector is derived from a bacterium selected from the group consisting of E. coli, member of the genus Shigella, member of the genus Camplylobacter, member of the genus Salmonella, and member of the genus Vibrio.

41. The method of claim 33, wherein the composition is administered orally by solution or enteric coated granule capsule.

42. The method of claim 33, wherein the composition is administered transcutaneously by a dry patch.

43. The method of claim 34, wherein the bacterial vector is derived from a bacterium selected from the group consisting of E. coli, member of the genus Shigella, member of the genus Camplylobacter, member of the genus Salmonella, and member of the genus Vibrio.