# Patent

## Title
Therapeutic compositions

## Abstract

This application relates to therapeutic siRNA agents and methods of making and using the agents.

## Background
RELATED APPLICATIONS
The present application is a continuation of U.S. application Ser. No. 13/626,196, filed Sep. 25, 2012, which is a continuation of U.S. application Ser. No. 12/721,413, filed Mar. 10, 2010, which is a continuation of U.S. application Ser. No. 10/548,611, filed Aug. 22, 2006, which is the National Stage of International Application No. PCT/US2004/007070, filed Mar. 8, 2004, which claims the benefit of Application No. 60/452,682, filed Mar. 7, 2003; Application No. 60/462,894, filed Apr. 14, 2003; and Application No. 60/465,665, filed Apr. 25, 2003; Application No. 60/463,772, filed Apr. 17, 2003; Application No. 60/465,802, filed Apr. 25, 2003; Application No. 60/493,986, filed Aug. 8, 2003; Application No. 60/494,597, filed Aug. 11, 2003; Application No. 60/506,341, filed Sep. 26, 2003; Application No. 60/518,453, filed Nov. 7, 2003; Application No. 60/454,265, filed Mar. 12, 2003; Application No. 60/454,962, filed Mar. 13, 2003; Application No. 60/455,050, filed Mar. 13, 2003; Application No. 60/469,612, filed May 9, 2003; Application No. 60/510,246, filed Oct. 9, 2003; Application No. 60/510,318, filed Oct. 10, 2003. The contents of the above applications are hereby incorporated by reference in their entirety.


TECHNICAL FIELD
The invention relates to RNAi and related methods, e.g., methods of making and using iRNA agents.
BACKGROUND
RNA interference or “RNAi” is a term initially coined by Fire and co-workers to describe the observation that double-stranded RNA (dsRNA) can block gene expression when it is introduced into worms (Fire et al. (1998) Nature 391, 806-811). Short dsRNA directs gene-specific, post-transcriptional silencing in many organisms, including vertebrates, and has provided a new tool for studying gene function. RNAi may involve mRNA degradation.
SUMMARY
A number of advances related to the application of RNAi to the treatment of subjects are disclosed herein. For example, the invention features iRNA agents targeted to specific genes; palindromic iRNA agents; iRNA agents having non canonical monomer pairings; iRNA agents having particular structures or architectures e.g., the Z-X-Y or asymmetrical iRNA agents described herein; drug delivery conjugates for the delivery of iRNA agents; amphipathic substances for the delivery of iRNA agents, as well as iRNA agents having chemical modifications for optimizing a property of the iRNA agent. The invention features each of these advances broadly as well as in combinations. For example, an iRNA agent targeted to a specific gene can also include one or more of a palindrome, non canonical, Z-X-Y, or asymmetric structure. Other nonlimiting examples of combinations include an asymmetric structure combined with a chemical modification, or formulations or methods or routes of delivery combined with, e.g., chemical modifications or architectures described herein. The iRNA agents of the invention can include any one of these advances, or pairwise or higher order combinations of the separate advances.
In one aspect, the invention features iRNA agents that can target more than one RNA region, and methods of using and making the iRNA agents.
In another aspect, an iRNA agent includes a first and second sequence that are sufficiently complementary to each other to hybridize. The first sequence can be complementary to a first target RNA region and the second sequence can be complementary to a second target RNA region.
In one embodiment, the first and second sequences of the iRNA agent are on different RNA strands, and the mismatch between the first and second sequences is less than 50%, 40%, 30%, 20%, 10%, 5%, or 1%.
In another embodiment, the first and second sequences of the iRNA agent are on the same RNA strand, and in a related embodiment more than 50%, 60%, 70%, 80%, 90%, 95%, or 1% of the iRNA agent is in bimolecular form.
In another embodiment, the first and second sequences of the iRNA agent are fully complementary to each other.
In one embodiment, the first target RNA region is encoded by a first gene and the second target RNA region is encoded by a second gene, and in another embodiment, the first and second target RNA regions are different regions of an RNA from a single gene. In another embodiment, the first and second sequences differ by at least 1 and no more than 6 nucleotides.
In certain embodiments, the first and second target RNA regions are on transcripts encoded by first and second sequence variants, e.g., first and second alleles, of a gene. The sequence variants can be mutations, or polymorphisms, for example.
In certain embodiments, the first target RNA region includes a nucleotide substitution, insertion, or deletion relative to the second target RNA region.
In other embodiments, the second target RNA region is a mutant or variant of the first target RNA region.
In certain embodiments, the first and second target RNA regions comprise viral, e.g., HCV, or human RNA regions. The first and second target RNA regions can also be on variant transcripts of an oncogene or include different mutations of a tumor suppressor gene transcript. In one embodiment, the oncogene, or tumor suppressor gene is expressed in the liver. In addition, the first and second target RNA regions correspond to hot-spots for genetic variation.
In another aspect, the invention features a mixture of varied iRNA agent molecules, including one iRNA agent that includes a first sequence and a second sequence sufficiently complementary to each other to hybridize, and where the first sequence is complementary to a first target RNA region and the second sequence is complementary to a second target RNA region. The mixture also includes at least one additional iRNA agent variety that includes a third sequence and a fourth sequence sufficiently complementary to each other to hybridize, and where the third sequence is complementary to a third target RNA region and the fourth sequence is complementary to a fourth target RNA region. In addition, the first or second sequence is sufficiently complementary to the third or fourth sequence to be capable of hybridizing to each other. In one embodiment, at least one, two, three or all four of the target RNA regions are expressed in the liver. Exemplary RNAs are transcribed from the apoB-100 gene, glucose-6-phosphatase gene, beta catenin gene, or an HCV gene.
In certain embodiments, the first and second sequences are on the same or different RNA strands, and the third and fourth sequences are on same or different RNA strands.
In one embodiment, the mixture further includes a third iRNA agent that is composed of the first or second sequence and the third or fourth sequence.
In one embodiment, the first sequence is identical to at least one of the second, third and fourth sequences, and in another embodiment, the first region differs by at least 1 but no more than 6 nucleotides from at least one of the second, third and fourth regions.
In certain embodiments, the first target RNA region comprises a nucleotide substitution, insertion, or deletion relative to the second, third or fourth target RNA region.
The target RNA regions can be variant sequences of a viral or human RNA, and in certain embodiments, at least two of the target RNA regions can be on variant transcripts of an oncogene or tumor suppressor gene. In one embodiment, the oncogene or tumor suppressor gene is expressed in the liver.
In certain embodiments, at least two of the target RNA regions correspond to hot-spots for genetic variation.
In one embodiment, the iRNA agents of the invention are formulated for pharmaceutical use. In one aspect, the invention provides a container (e.g., a vial, syringe, nebulizer, etc) to hold the iRNA agents described herein.
Another aspect of the invention features a method of making an iRNA agent. The method includes constructing an iRNA agent that has a first sequence complementary to a first target RNA region, and a second sequence complementary to a second target RNA region. The first and second target RNA regions have been identified as being sufficiently complementary to each other to be capable of hybridizing. In one embodiment, the first and second target RNA regions are on transcripts expressed in the liver.
In certain embodiments, the first and second target RNA regions can correspond to two different regions encoded by one gene, or to regions encoded by two different genes.
Another aspect of the invention features a method of making an iRNA agent composition. The method includes obtaining or providing information about a region of an RNA of a target gene (e.g., a viral or human gene, or an oncogene or tumor suppressor, e.g., p53), where the region has high variability or mutational frequency (e.g., in humans). In addition, information about a plurality of RNA targets within the region is obtained or provided, where each RNA target corresponds to a different variant or mutant of the gene (e.g., a region including the codon encoding p53 248Q and/or p53 249S). The iRNA agent is constructed such that a first sequence is complementary to a first of the plurality of variant RNA targets (e.g., encoding 249Q) and a second sequence is complementary to a second of the plurality of variant RNA targets (e.g., encoding 249S). The first and second sequences are sufficiently complementary to hybridize. In certain embodiments, the target gene can be a viral or human gene expressed in the liver.
In one embodiment, sequence analysis, e.g., to identify common mutants in the target gene, is used to identify a region of the target gene that has high variability or mutational frequency. For example, sequence analysis can be used to identify regions of apoB-100 or beta catenin that have high variability or mutational frequency. In another embodiment, the region of the target gene having high variability or mutational frequency is identified by obtaining or providing genotype information about the target gene from a population. In another embodiment, the genotype information can be from a population suffering from a liver disorder, such as hepatocellular carcinoma or hepatoblastoma.
Another aspect of the invention features a method of modulating expression, e.g., downregulating or silencing, a target gene, by providing an iRNA agent that has a first sequence and a second sequence sufficiently complementary to each other to hybridize. In addition, the first sequence is complementary to a first target RNA region and the second sequence is complementary to a second target RNA region.
In one embodiment, the iRNA agent is administered to a subject, e.g., a human.
In another embodiment, the first and second sequences are between 15 and 30 nucleotides in length.
In one embodiment, the method of modulating expression of the target gene further includes providing a second iRNA agent that has a third sequence complementary to a third target RNA region. The third sequence can be sufficiently complementary to the first or second sequence to be capable of hybridizing to either the first or second sequence.
Another aspect of the invention features a method of modulating expression, e.g., downregulating or silencing, a plurality of target RNAs, each of the plurality of target RNAs corresponding to a different target gene. The method includes providing an iRNA agent selected by identifying a first region in a first target RNA of the plurality and a second region in a second target RNA of the plurality, where the first and second regions are sufficiently complementary to each other to be capable of hybridizing.
In another aspect of the invention, an iRNA agent molecule includes a first sequence complementary to a first variant RNA target region and a second sequence complementary to a second variant RNA target region, and the first and second variant RNA target regions correspond to first and second variants or mutants of a target gene. In certain embodiments, the target gene is an apoB-100, beta catenin, or glucose-6 phosphatase gene.
In one embodiment, the target gene is a viral gene (e.g., an HCV gene), tumor suppressor or oncogene.
In another embodiment, the first and second variant target RNA regions include allelic variants of the target gene.
In another embodiment, the first and second variant RNA target regions comprise mutations (e.g., point mutations) or polymorphisms of the target gene.
In one embodiment, the first and second variant RNA target regions correspond to hot-spots for genetic variation.
Another aspect of the invention features a plurality (e.g., a panel or bank) of iRNA agents. Each of the iRNA agents of the plurality includes a first sequence complementary to a first variant target RNA region and a second sequence complementary to a second variant target RNA region, where the first and second variant target RNA regions correspond to first and second variants of a target gene. In certain embodiments, the variants are allelic variants of the target gene.
Another aspect of the invention provides a method of identifying an iRNA agent for treating a subject. The method includes providing or obtaining information, e.g., a genotype, about a target gene, providing or obtaining information about a plurality (e.g., panel or bank) of iRNA agents, comparing the information about the target gene to information about the plurality of iRNA agents, and selecting one or more of the plurality of iRNA agents for treating the subject. Each of the plurality of iRNA agents includes a first sequence complementary to a first variant target RNA region and a second sequence complementary to a second variant target RNA region, and the first and second variant target RNA regions correspond to first and second variants of the target gene. The target gene can be an endogenous gene of the subject or a viral gene. The information about the plurality of iRNA agents can be the sequence of the first or second sequence of one or more of the plurality.
In certain embodiments, at least one of the selected iRNA agents includes a sequence capable of hybridizing to an RNA region corresponding to the target gene, and at least one of the selected iRNA agents comprises a sequence capable of hybridizing to an RNA region corresponding to a variant or mutant of the target gene.
In one aspect, the invention relates to compositions and methods for silencing genes expressed in the liver, e.g., to treat disorders of or related to the liver. An iRNA agent composition of the invention can be one which has been modified to alter distribution in favor of the liver.
In another aspect, the invention relates to iRNA agents that can target more than one RNA region, and methods of using and making the iRNA agents. In one embodiment, the RNA is from a gene that is active in the liver, e.g., apoB-100, glucose-6-phosphatase, beta-catenin, or Hepatitis C virus (HCV).
In another aspect, an iRNA agent includes a first and second sequence that are sufficiently complementary to each other to hybridize. The first sequence can be complementary to a first target RNA region and the second sequence can be complementary to a second target RNA region. For example, the first sequence can be complementary to a first target apoB-100 RNA region and the second sequence can be complementary to a second target apoB-100 RNA region.
In one embodiment, the first target RNA region is encoded by a first gene, e.g., a gene expressed in the liver, and the second target RNA region is encoded by a second gene, e.g., a second gene expressed in the liver. In another embodiment, the first and second target RNA regions are different regions of an RNA from a single gene, e.g., a single gene that is at least expressed in the liver. In another embodiment, the first and second sequences differ by at least one and no more than six nucleotides.
In another embodiment, sequence analysis, e.g., to identify common mutants in the target gene, is used to identify a region of the target gene that has high variability or mutational frequency. For example, sequence analysis can be used to identify regions of aopB-100 or beta catenin that have high variability or mutational frequency. In another embodiment, the region of the target gene having high variability or mutational frequency is identified by obtaining or providing genotype information about the target gene from a population. In particular, the genotype information can be from a population suffering from a liver disorder, such as hepatocellular carcinoma or hepatoblastoma.
In another aspect, the invention features a method for reducing apoB-100 levels in a subject, e.g., a mammal, such as a human. The method includes administering to a subject an iRNA agent which targets apoB-100. The iRNA agent can be one described here, and can be a dsRNA that has a sequence that is substantially identical to a sequence of the apoB-100 gene. The iRNA can be less than 30 nucleotides in length, e.g., 21-23 nucleotides. Preferably, the iRNA is 21 nucleotides in length. In one embodiment, the iRNA is 21 nucleotides in length, and the duplex region of the iRNA is 19 nucleotides. In another embodiment, the iRNA is greater than 30 nucleotides in length.
In a preferred embodiment, the subject is treated with an iRNA agent which targets one of the sequences listed in Tables 5 and 6. In a preferred embodiment it targets both sequences of a palindromic pair provided in Tables 5 and 6. The most preferred targets are listed in descending order of preferrability, in other words, the more preferred targets are listed earlier in Tables 5 and 6.
In a preferred embodiment the iRNA agent will include regions, or strands, which are complementary to a pair in Tables 5 and 6. In a preferred embodiment the iRNA agent will include regions complementary to the palindromic pairs of Tables 5 and 6 as a duplex region.
In a preferred embodiment the duplex region of the iRNA agent will target a sequence listed in Tables 5 and 6 but will not be perfectly complementary with the target sequence, e.g., it will not be complementary at at least 1 base pair. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, in total, or per strand, which do not hybridize with the target sequence
In a preferred embodiment the iRNA agent includes overhangs, e.g., 3′ or 5′ overhangs, preferably one or more 3′ overhangs. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
The iRNA agent that targets apoB-100 can be administered in an amount sufficient to reduce expression of apoB-100 mRNA. In one embodiment, the iRNA agent is administered in an amount sufficient to reduce expression of apoB-100 protein (e.g., by at least 2%, 4%, 6%, 10%, 15%, 20%). Preferably, the iRNA agent does not reduce expression of apoB-48 mRNA or protein. This can be effected, e.g., by selection of an iRNA agent which specifically targets the nucleotides subject to RNA editing in the apoB-100 transcript.
The iRNA agent that targets apoB-100 can be administered to a subject, wherein the subject is suffering from a disorder characterized by elevated or otherwise unwanted expression of apoB-100, elevated or otherwise unwanted levels of cholesterol, and/or disregulation of lipid metabolism. The iRNA agent can be administered to an individual at risk for the disorder to delay onset of the disorder or a symptom of the disorder. These disorders include HDL/LDL cholesterol imbalance; dyslipidemias, e.g., familial combined hyperlipidemia (FCHL), acquired hyperlipidemia; hypercholestorolemia; statin-resistant hypercholesterolemia; coronary artery disease (CAD) coronary heart disease (CHD) atherosclerosis. In one embodiment, the iRNA that targets apoB-100 is administered to a subject suffering from statin-resistant hypercholesterolemia.
The apoB-100 iRNA agent can be administered in an amount sufficient to reduce levels of serum LDL-C and/or HDL-C and/or total cholesterol in a subject. For example, the iRNA is administered in an amount sufficient to decrease total cholesterol by at least 0.5%, 1%, 2.5%, 5%, 10% in the subject. In one embodiment, the iRNA agent is administered in an amount sufficient to reduce the risk of myocardial infarction the subject.
In a preferred embodiment the iRNA agent is administered repeatedly. Administration of an iRNA agent can be carried out over a range of time periods. It can be administered daily, once every few days, weekly, or monthly. The timing of administration can vary from patient to patient, depending on such factors as the severity of a patient's symptoms. For example, an effective dose of an iRNA agent can be administered to a patient once a month for an indefinite period of time, or until the patient no longer requires therapy. In addition, sustained release compositions containing an iRNA agent can be used to maintain a relatively constant dosage in the patient's blood.
In one embodiment, the iRNA agent can be targeted to the liver, and apoB expression level are decreased in the liver following administration of the apoB iRNA agent. For example, the iRNA agent can be complexed with a moiety that targets the liver, e.g., an antibody or ligand that binds a receptor on the liver.
The iRNA agent, particularly an iRNA agent that targets apoB, beta-catenin or glucose-6-phosphatase RNA, can be targeted to the liver, for example by associating, e.g., conjugating the iRNA agent to a lipophilic moiety, e.g., a lipid, cholesterol, oleyl, retinyl, or cholesteryl residue (see Table 1). Other lipophilic moieties that can be associated, e.g., conjugated with the iRNA agent include cholic acid, adamantane acetic acid, 1-pyrene butyric acid, dihydrotestosterone, 1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol, borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid, myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid, dimethoxytrityl, or phenoxazine. In one embodiment, the iRNA agent can be targeted to the liver by associating, e.g., conjugating, the iRNA agent to a low-density lipoprotein (LDL), e.g., a lactosylated LDL. In another embodiment, the iRNA agent can be targeted to the liver by associating, e.g., conjugating, the iRNA agent to a polymeric carrier complex with sugar residues.
In another embodiment, the iRNA agent can be targeted to the liver by associating, e.g., conjugating, the iRNA agent to a liposome complexed with sugar residues. A targeting agent that incorporates a sugar, e.g., galactose and/or analogues thereof, is particularly useful. These agents target, in particular, the parenchymal cells of the liver (see Table 1). In a preferred embodiment, the targeting moiety includes more than one galactose moiety, preferably two or three. Preferably, the targeting moiety includes 3 galactose moieties, e.g., spaced about 15 angstroms from each other. The targeting moiety can be lactose. A lactose is a glucose coupled to a galactose. Preferably, the targeting moiety includes three lactoses. The targeting moiety can also be N-Acetyl-Galactosamine, N-Ac-Glucosamine A mannose, or mannose-6-phosphate targeting moiety can be used for macrophage targeting.
The targeting agent can be linked directly, e.g., covalently or non covalently, to the iRNA agent, or to another delivery or formulation modality, e.g., a liposome. E.g., the iRNA agents with or without a targeting moiety can be incorporated into a delivery modality, e.g., a liposome, with or without a targeting moiety.
It is particularly preferred to use an iRNA conjugated to a lipophilic molecule to conjugate to an iRNA agent that targets apoB, beta-catenin or glucose-6-phosphatase iRNA targeting agent.
In one embodiment, the iRNA agent has been modified, or is associated with a delivery agent, e.g., a delivery agent described herein, e.g., a liposome, which has been modified to alter distribution in favor of the liver. In one embodiment, the modification mediates association with a serum albumin (SA), e.g., a human serum albumin (HSA), or a fragment thereof.
The iRNA agent, particularly an iRNA agent that targets apoB, beta-catenin or glucose-6-phosphatase RNA, can be targeted to the liver, for example by associating, e.g., conjugating the iRNA agent to an SA molecule, e.g., an HSA molecule, or a fragment thereof. In one embodiment, the iRNA agent or composition thereof has an affinity for an SA, e.g., HSA, which is sufficiently high such that its levels in the liver are at least 10, 20, 30, 50, or 100% greater in the presence of SA, e.g., HSA, or is such that addition of exogenous SA will increase delivery to the liver. These criteria can be measured, e.g., by testing distribution in a mouse in the presence or absence of exogenous mouse or human SA.
The SA, e.g., HSA, targeting agent can be linked directly, e.g., covalently or noncovalently, to the iRNA agent, or to another delivery or formulation modality, e.g., a liposome. E.g., the iRNA agents with or without a targeting moiety can be incorporated into a delivery modality, e.g., a liposome, with or without a targeting moiety.
It is particularly preferred to use an iRNA conjugated to an SA, e.g., an HSA, molecule wherein the iRNA agent is an apoB, beta-catenin or glucose-6-phosphatase iRNA targeting agent.
In another aspect, the invention features, a method for reducing glucose-6-phosphatase levels in a subject, e.g., a mammal, such as a human. The method includes administering to a subject an iRNA agent which targets glucose-6-phosphatase. The iRNA agent can be a dsRNA that has a sequence that is substantially identical to a sequence of the glucose-6-phosphatase gene.
In a preferred embodiment, the subject is treated with an iRNA agent which targets one of the sequences listed in Table 7. In a preferred embodiment it targets both sequences of a palindromic pair provided in Table 7. The most preferred targets are listed in descending order of preferrability, in other words, the more preferred targets are listed earlier in Table 7.
In a preferred embodiment the iRNA agent will include regions, or strands, which are complementary to a pair in Table 7. In a preferred embodiment the iRNA agent will include regions complementary to the palindromic pairs of Table 7 as a duplex region.
In a preferred embodiment the duplex region of the iRNA agent will target a sequence listed in Table 7 but will not be perfectly complementary with the target sequence, e.g., it will not be complementary at at least 1 base pair. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, in total, or per strand, which do not hybridize with the target sequence
In a preferred embodiment the iRNA agent includes overhangs, e.g., 3′ or 5′ overhangs, preferably one or more 3′ overhangs. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
Table 7 refers to sequences from human glucose-6-phosphatase. Table 8 refers to sequences from rat glucose-6-phosphatase. The sequences from table 8 can be used, e.g., in experiments with rats or cultured rat cells.
In a preferred embodiment iRNA agent can have any architecture, e.g., architecture described herein. E.g., it can be incorporated into an iRNA agent having an overhang structure, overall length, hairpin vs. two-strand structure, as described herein. In addition, monomers other than naturally occurring ribonucleotides can be used in the selected iRNA agent.
The iRNA that targets glucose-6-phosphatase can be administered in an amount sufficient to reduce expression of glucose-6-phosphatase mRNA.
The iRNA that targets glucose-6-phosphatase can be administered to a subject to inhibit hepatic glucose production, for the treatment of glucose-metabolism-related disorders, such as diabetes, e.g., type-2-diabetes mellitus. The iRNA agent can be administered to an individual at risk for the disorder to delay onset of the disorder or a symptom of the disorder.
In other embodiments, iRNA agents having sequence similarity to the following genes can also be used to inhibit hepatic glucose production. These other genes include “forkhead homologue in rhabdomyosarcoma (FKHR); glucagon; glucagon receptor; glycogen phosphorylase; PPAR-Gamma Coactivator (PGC-1); Fructose-1,6-bisphosphatase; glucose-6-phosphate locator; glucokinase inhibitory regulatory protein; and phosphoenolpyruvate carboxykinase (PEPCK).
In one embodiment, the iRNA agent can be targeted to the liver, and RNA expression levels of the targeted genes are decreased in the liver following administration of the iRNA agent.
The iRNA agent can be one described herein, and can be a dsRNA that has a sequence that is substantially identical to a sequence of a target gene. The iRNA can be less than 30 nucleotides in length, e.g., 21-23 nucleotides. Preferably, the iRNA is 21 nucleotides in length. In one embodiment, the iRNA is 21 nucleotides in length, and the duplex region of the iRNA is 19 nucleotides. In another embodiment, the iRNA is greater than 30 nucleotides in length
In another aspect, the invention features a method for reducing beta-catenin levels in a subject, e.g., a mammal, such as a human. The method includes administering to a subject an iRNA agent that targets beta-catenin. The iRNA agent can be one described herein, and can be a dsRNA that has a sequence that is substantially identical to a sequence of the beta-catenin gene. The iRNA can be less than 30 nucleotides in length, e.g., 21-23 nucleotides. Preferably, the iRNA is 21 nucleotides in length. In one embodiment, the iRNA is 21 nucleotides in length, and the duplex region of the iRNA is 19 nucleotides. In another embodiment, the iRNA is greater than 30 nucleotides in length.
In a preferred embodiment, the subject is treated with an iRNA agent which targets one of the sequences listed in Table 9. In a preferred embodiment it targets both sequences of a palindromic pair provided in Table 9. The most preferred targets are listed in descending order of preferrability, in other words, the more preferred targets are listed earlier in Table 9.
In a preferred embodiment, the subject is treated with an iRNA agent which targets one of the sequences listed in Table 9. In a preferred embodiment it targets both sequences of a palindromic pair provided in Table 9. The most preferred targets are listed in descending order of preferrability, in other words, the more preferred targets are listed earlier in Table 9.
In a preferred embodiment the iRNA agent will include regions, or strands, which are complementary to a pair in Table 9. In a preferred embodiment the iRNA agent will include regions complementary to the palindromic pairs of Table 9 as a duplex region.
In a preferred embodiment the duplex region of the iRNA agent will target a sequence listed in Table 9 but will not be perfectly complementary with the target sequence, e.g., it will not be complementary at at least 1 base pair. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, in total, or per strand, which do not hybridize with the target sequence
In a preferred embodiment the iRNA agent includes overhangs, e.g., 3′ or 5′ overhangs, preferably one or more 3′ overhangs. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
The iRNA agent that targets beta-catenin can be administered in an amount sufficient to reduce expression of beta-catenin mRNA. In one embodiment, the iRNA agent is administered in an amount sufficient to reduce expression of beta-catenin protein (e.g., by at least 2%, 4%, 6%, 10%, 15%, 20%).
The iRNA agent that targets beta-catenin can be administered to a subject, wherein the subject is suffering from a disorder characterized by unwanted cellular proliferation in the liver or of liver tissue, e.g., metastatic tissue originating from the liver. Examples include, a benign or malignant disorder, e.g., a cancer, e.g., a hepatocellular carcinoma (HCC), hepatic metastasis, or hepatoblastoma.
The iRNA agent can be administered to an individual at risk for the disorder to delay onset of the disorder or a symptom of the disorder
In a preferred embodiment the iRNA agent is administered repeatedly. Administration of an iRNA agent can be carried out over a range of time periods. It can be administered daily, once every few days, weekly, or monthly. The timing of administration can vary from patient to patient, depending on such factors as the severity of a patient's symptoms. For example, an effective dose of an iRNA agent can be administered to a patient once a month for an indefinite period of time, or until the patient no longer requires therapy. In addition, sustained release compositions containing an iRNA agent can be used to maintain a relatively constant dosage in the patient's blood.
In one embodiment, the iRNA agent can be targeted to the liver, and beta-catenin expression level are decreased in the liver following administration of the beta-catenin iRNA agent. For example, the iRNA agent can be complexed with a moiety that targets the liver, e.g., an antibody or ligand that binds a receptor on the liver.
In another aspect, the invention provides methods to treat liver disorders, e.g., disorders characterized by unwanted cell proliferation, hematological disorders, disorders characterized by inflammation disorders, and metabolic or viral diseases or disorders of the liver. A proliferation disorder of the liver can be, for example, a benign or malignant disorder, e.g., a cancer, e.g, a hepatocellular carcinoma (HCC), hepatic metastasis, or hepatoblastoma. A hepatic hematology or inflammation disorder can be a disorder involving clotting factors, a complement-mediated inflammation or a fibrosis, for example. Metabolic diseases of the liver can include dyslipidemias, and irregularities in glucose regulation. Viral diseases of the liver can include hepatitis C or hepatitis B. In one embodiment, a liver disorder is treated by administering one or more iRNA agents that have a sequence that is substantially identical to a sequence in a gene involved in the liver disorder.
In one embodiment an iRNA agent to treat a liver disorder has a sequence which is substantially identical to a sequence of the beta-catenin or c-jun gene. In another embodiment, such as for the treatment of hepatitis C or hepatitis B, the iRNA agent can have a sequence that is substantially identical to a sequence of a gene of the hepatitis C virus or the hepatitis B virus, respectively. For example, the iRNA agent can target the 5′ core region of HCV. This region lies just downstream of the ribosomal toe-print straddling the initiator methionine. Alternatively, an iRNA agent of the invention can target any one of the nonstructural proteins of HCV: NS3, 4A, 4B, 5A, or 5B. For the treatment of hepatitis B, an iRNA agent can target the protein X (HBx) gene, for example.
In a preferred embodiment, the subject is treated with an iRNA agent which targets one of the sequences listed in Table 10. In a preferred embodiment it targets both sequences of a palindromic pair provided in Table 10. The most preferred targets are listed in descending order of preferrability, in other words, the more preferred targets are listed earlier in Table 10.
In a preferred embodiment the iRNA agent will include regions, or strands, which are complementary to a pair in Table 10. In a preferred embodiment the iRNA agent will include regions complementary to the palindromic pairs of Table 10 as a duplex region.
In a preferred embodiment the duplex region of the iRNA agent will target a sequence listed in Table 10, but will not be perfectly complementary with the target sequence, e.g., it will not be complementary at at least 1 base pair. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, in total, or per strand, which do not hybridize with the target sequence
In a preferred embodiment the iRNA agent includes overhangs, e.g., 3′ or 5′ overhangs, preferably one or more 3′ overhangs. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
In another aspect, an iRNA agent can be administered to modulate blood clotting, e.g., to reduce the tendency to form a blood clot. In a preferred embodiment the iRNA agent targets Factor V expression, preferably in the liver. One or more iRNA agents can be used to target a wild type allele, a mutant allele, e.g., the Leiden Factor V allele, or both. Such administration can be used to treat or prevent venous thrombosis, e.g., deep vein thrombosis or pulmonary embolism, or another disorder caused by elevated or otherwise unwanted expression of Factor V, in, e.g., the liver. In one embodiment the iRNA agent can treat a subject, e.g., a human who has Factor V Leiden or other genetic trait associated with an unwanted tendency to form blood clots.
In a preferred embodiment administration of an iRNA agent which targets Factor V is with the administration of a second treatment, e.g, a treatment which reduces the tendency of the blood to clot, e.g., the administration of heparin or of a low molecular weight heparin.
In one embodiment, the iRNA agent that targets Factor V can be used as a prophylaxis in patients, e.g., patients with Factor V Leiden, who are placed at risk for a thrombosis, e.g., those about to undergo surgery, in particular those about to undergo high-risk surgical procedures known to be associated with formation of venous thrombosis, those about to undergo a prolonged period of relative inactivity, e.g., on a motor vehicle, train or airplane flight, e.g., a flight or other trip lasting more than three or five hours. Such a treatment can be an adjunct to the therapeutic use of low molecular weight (LMW) heparin prophylaxis.
In another embodiment, the iRNA agent that targets Factor V can be administered to patients with Factor V Leiden to treat deep vein thrombosis (DVT) or pulmonary embolism (PE). Such a treatment can be an adjunct to (or can replace) therapeutic uses of heparin or coumadin. The treatment can be administered by inhalation or generally by pulmonary routes.
In a preferred embodiment, an iRNA agent administered to treat a liver disorder is targeted to the liver. For example, the iRNA agent can be complexed with a targeting moiety, e.g., an antibody or ligand that recognizes a liver-specific receptor.
The invention also includes preparations, including substantially pure or pharmaceutically acceptable preparations of iRNA agents which silence any of the genes discussed herein and in particular for any of apoB-100, glucose-6-phosphatase, beta-catenin, factor V, or any of the HVC genes discussed herein.
The methods and compositions of the invention, e.g., the methods and compositions to treat diseases and disorders of the liver described herein, can be used with any of the iRNA agents described. In addition, the methods and compositions of the invention can be used for the treatment of any disease or disorder described herein, and for the treatment of any subject, e.g., any animal, any mammal, such as any human.
In another aspect, the invention features, a method of selecting two sequences or strands for use in an iRNA agent. The method includes:
providing a first candidate sequence and a second candidate sequence;
determining the value of a parameter which is a function of the number of palindromic pairs between the first and second sequence, wherein a palindromic pair is a nucleotide on said first sequence which, when the sequences are aligned in anti-parallel orientation, will hybridize with a nucleotide on said second sequence;
comparing the number with a predetermined reference value, and if the number has a predetermined relationship with the reference, e.g., if it is the same or greater, selecting the sequences for use in an iRNA agent. In most cases each of the two sequences will be completely complementary with a target sequence (though as described elsewhere herein that may not always be the case, there may not be perfect complementarity with one or both of the target sequences) and will have sufficient complementarity with each other to form a duplex. The parameter can be derived e.g., by directly determining the number of palindromic pairs, e.g., by inspection or by the use of a computer program which compares or analyses sequence. The parameter can also be determined less directly, and include e.g., calculation of or measurement of the Tm or other value related to the free energy of association or dissociation of a duplex.
In a preferred embodiment the determination can be performed on a target sequence, e.g., a genomic sequence. In such embodiments the selected sequence is converted to its complement in the iRNA agent.
In a preferred embodiment the first and second sequences are selected from the sequence of a single target gene. In other embodiments the first sequence is selected from the sequence of a first target gene and the second sequence is selected from the target of a second target gene.
In a preferred embodiment the method includes comparing blocks of sequence, e.g., blocks which are between 15 and 25 nucleotides in length, and preferably 19, 20, or 21, and most preferably 19 nucleotides in length, to determine if they are suitable for use, e.g., if they possess sufficient palindromic pairs.
In a preferred embodiment the first and second sequences are divided into a plurality of regions, e.g., terminal regions and a middle region disposed between the terminal regions and where in the reference value, or the predetermined relationship to the reference value, is different for at least two regions. E.g., the first and second sequences, when aligned in anti-parallel orientation, are divided into terminal regions each of a selected number of base pairs, e.g., 2, 3, 4, 5, or 6, and a middle region, and the reference value for the terminal regions is higher than for the middle regions. In other words, a higher number or proportion of palindromic pairs is required in the terminal regions.
In a preferred embodiment the first and second sequences are gene sequences thus the complements of the sequences will be used in a iRNA agent.
In a preferred embodiment hybridize means a classical Watson-Crick pairing. In other embodiments hybridize can include non-Watson-Crick paring, e.g., parings seen in micro RNA precursors.
In a preferred embodiment the method includes the addition of nucleotides to form overhangs, e.g., 3′ or 5′ overhangs, preferably one or more 3′ overhangs. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
In a preferred embodiment the method is used to select all or part of a iRNA agent. The selected sequences can be incorporated into an iRNA agent having any architecture, e.g., an architecture described herein. E.g., it can be incorporated into an iRNA agent having an overhang structure, overall length, hairpin vs. two-strand structure, as described herein. In addition, monomers other than naturally occurring ribonucleotides can be used in the selected iRNA agent.
Preferred iRNA agents of this method will target genes expressed in the liver, e.g., one of the genes disclosed herein, e.g., apo B, Beta catenin, an HVC gene, or glucose 6 phosphatase.
In another aspect, the invention features, an iRNA agent, determined, made, or selected by a method described herein.
The methods and compositions of the invention, e.g., the methods and iRNA compositions to treat liver-based diseases described herein, can be used with any dosage and/or formulation described herein, as well as with any route of administration described herein.
The invention also provides for the use of an iRNA agent which includes monomers which can form other than a canonical Watson-Crick pairing with another monomer, e.g., a monomer on another strand.
The use of “other than canonical Watson-Crick pairing” between monomers of a duplex can be used to control, often to promote, melting of all or part of a duplex. The iRNA agent can include a monomer at a selected or constrained position that results in a first level of stability in the iRNA agent duplex (e.g., between the two separate molecules of a double stranded iRNA agent) and a second level of stability in a duplex between a sequence of an iRNA agent and another sequence molecule, e.g., a target or off-target sequence in a subject. In some cases the second duplex has a relatively greater level of stability, e.g., in a duplex between an anti-sense sequence of an iRNA agent and a target mRNA. In this case one or more of the monomers, the position of the monomers in the iRNA agent, and the target sequence (sometimes referred to herein as the selection or constraint parameters), are selected such that the iRNA agent duplex is has a comparatively lower free energy of association (which while not wishing to be bound by mechanism or theory, is believed to contribute to efficacy by promoting disassociation of the duplex iRNA agent in the context of the RISC) while the duplex formed between an anti-sense targeting sequence and its target sequence, has a relatively higher free energy of association (which while not wishing to be bound by mechanism or theory, is believed to contribute to efficacy by promoting association of the anti-sense sequence and the target RNA).
In other cases the second duplex has a relatively lower level of stability, e.g., in a duplex between a sense sequence of an iRNA agent and an off-target mRNA. In this case one or more of the monomers, the position of the monomers in the iRNA agent, and an off-target sequence, are selected such that the iRNA agent duplex is has a comparatively higher free energy of association while the duplex formed between a sense targeting sequence and its off-target sequence, has a relatively lower free energy of association (which while not wishing to be bound by mechanism or theory, is believed to reduce the level of off-target silencing by contribute to efficacy by promoting disassociation of the duplex formed by the sense strand and the off-target sequence).
Thus, inherent in the structure of the iRNA agent is the property of having a first stability for the intra-iRNA agent duplex and a second stability for a duplex formed between a sequence from the iRNA agent and another RNA, e.g., a target mRNA. As discussed above, this can be accomplished by judicious selection of one or more of the monomers at a selected or constrained position, the selection of the position in the duplex to place the selected or constrained position, and selection of the sequence of a target sequence (e.g., the particular region of a target gene which is to be targeted). The iRNA agent sequences which satisfy these requirements are sometimes referred herein as constrained sequences. Exercise of the constraint or selection parameters can be, e.g., by inspection, or by computer assisted methods. Exercise of the parameters can result in selection of a target sequence and of particular monomers to give a desired result in terms of the stability, or relative stability, of a duplex.
Thus, in one aspect, the invention features, an iRNA agent which includes: a first sequence which targets a first target region and a second sequence which targets a second target region. The first and second sequences have sufficient complementarity to each other to hybridize, e.g., under physiological conditions, e.g., under physiological conditions but not in contact with a helicase or other unwinding enzyme. In a duplex region of the iRNA agent, at a selected or constrained position, the first target region has a first monomer, and the second target region has a second monomer. The first and second monomers occupy complementary or corresponding positions. One, and preferably both monomers are selected such that the stability of the pairing of the monomers contribute to a duplex between the first and second sequence will differ form the stability of the pairing between the first or second sequence with a target sequence.
Usually, the monomers will be selected (selection of the target sequence may be required as well) such that they form a pairing in the iRNA agent duplex which has a lower free energy of dissociation, and a lower Tm, than will be possessed by the paring of the monomer with its complementary monomer in a duplex between the iRNA agent sequence and a target RNA duplex.
The constraint placed upon the monomers can be applied at a selected site or at more than one selected site. By way of example, the constraint can be applied at more than 1, but less than 3, 4, 5, 6, or 7 sites in an iRNA agent duplex.
A constrained or selected site can be present at a number of positions in the iRNA agent duplex. E.g., a constrained or selected site can be present within 3, 4, 5, or 6 positions from either end, 3′ or 5′ of a duplexed sequence. A constrained or selected site can be present in the middle of the duplex region, e.g., it can be more than 3, 4, 5, or 6, positions from the end of a duplexed region.
The iRNA agent can be selected to target a broad spectrum of genes, including any of the genes described herein.
In a preferred embodiment the iRNA agent has an architecture (architecture refers to one or more of overall length, length of a duplex region, the presence, number, location, or length of overhangs, sing strand versus double strand form) described herein.
E.g., the iRNA agent can be less than 30 nucleotides in length, e.g., 21-23 nucleotides. Preferably, the iRNA is 21 nucleotides in length and there is a duplex region of about 19 pairs. In one embodiment, the iRNA is 21 nucleotides in length, and the duplex region of the iRNA is 19 nucleotides. In another embodiment, the iRNA is greater than 30 nucleotides in length.
In some embodiment the duplex region of the iRNA agent will have, mismatches, in addition to the selected or constrained site or sites. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, which do not form canonical Watson-Crick pairs or which do not hybridize. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
The monomers can be selected such that: first and second monomers are naturally occurring ribonucleotides, or modified ribonucleotides having naturally occurring bases, and when occupying complementary sites either do not pair and have no substantial level of H-bonding, or form a non canonical Watson-Crick pairing and form a non-canonical pattern of H bonding, which usually have a lower free energy of dissociation than seen in a canonical Watson-Crick pairing, or otherwise pair to give a free energy of association which is less than that of a preselected value or is less, e.g., than that of a canonical pairing. When one (or both) of the iRNA agent sequences duplexes with a target, the first (or second) monomer forms a canonical Watson-Crick pairing with the base in the complementary position on the target, or forms a non canonical Watson-Crick pairing having a higher free energy of dissociation and a higher Tm than seen in the paring in the iRNA agent. The classical Watson-Crick parings are as follows: A-T, G-C, and A-U. Non-canonical Watson-Crick pairings are known in the art and can include, U-U, G-G, G-Atrans, G-Acis, and GU.
The monomer in one or both of the sequences is selected such that, it does not pair, or forms a pair with its corresponding monomer in the other sequence which minimizes stability (e.g., the H bonding formed between the monomer at the selected site in the one sequence and its monomer at the corresponding site in the other sequence are less stable than the H bonds formed by the monomer one (or both) of the sequences with the respective target sequence. The monomer in one or both strands is also chosen to promote stability in one or both of the duplexes made by a strand and its target sequence. E.g., one or more of the monomers and the target sequences are selected such that at the selected or constrained position, there is are no H bonds formed, or a non canonical pairing is formed in the iRNA agent duplex, or otherwise they otherwise pair to give a free energy of association which is less than that of a preselected value or is less, e.g., than that of a canonical pairing, but when one (or both) sequences form a duplex with the respective target, the pairing at the selected or constrained site is a canonical Watson-Crick pairing.
The inclusion of such a monomers will have one or more of the following effects: it will destabilize the iRNA agent duplex, it will destabilize interactions between the sense sequence and unintended target sequences, sometimes referred to as off-target sequences, and duplex interactions between the a sequence and the intended target will not be destabilized.
By way of example:
the monomer at the selected site in the first sequence includes an A (or a modified base which pairs with T), and the monomer in at the selected position in the second sequence is chosen from a monomer which will not pair or which will form a non-canonical pairing, e.g., G. These will be useful in applications wherein the target sequence for the first sequence has a T at the selected position. In embodiments where both target duplexes are stabilized it is useful wherein the target sequence for the second strand has a monomer which will form a canonical Watson-Crick pairing with the monomer selected for the selected position in the second strand.
the monomer at the selected site in the first sequence includes U (or a modified base which pairs with A), and the monomer in at the selected position in the second sequence is chosen from a monomer which will not pair or which will form a non-canonical pairing, e.g., U or G. These will be useful in applications wherein the target sequence for the first sequence has a T at the selected position. In embodiments where both target duplexes are stabilized it is useful wherein the target sequence for the second strand has a monomer which will form a canonical Watson-Crick pairing with the monomer selected for the selected position in the second strand.
The monomer at the selected site in the first sequence includes a G (or a modified base which pairs with C), and the monomer in at the selected position in the second sequence is chosen from a monomer which will not pair or which will form a non-canonical pairing, e.g., G, Acis, Atrans, or U. These will be useful in applications wherein the target sequence for the first sequence has a T at the selected position. In embodiments where both target duplexes are stabilized it is useful wherein the target sequence for the second strand has a monomer which will form a canonical Watson-Crick pairing with the monomer selected for the selected position in the second strand.
The monomer at the selected site in the first sequence includes a C (or a modified base which pairs with G), and the monomer in at the selected position in the second sequence is chosen a monomer which will not pair or which will form a non-canonical pairing. These will be useful in applications wherein the target sequence for the first sequence has a T at the selected position. In embodiments where both target duplexes are stabilized it is useful wherein the target sequence for the second strand has a monomer which will form a canonical Watson-Crick pairing with the monomer selected for the selected position in the second strand.
In another embodiment a non-naturally occurring or modified monomer or monomers are chosen such that when a non-naturally occurring or modified monomer occupies a positions at the selected or constrained position in an iRNA agent they exhibit a first free energy of dissociation and when one (or both) of them pairs with a naturally occurring monomer, the pair exhibits a second free energy of dissociation, which is usually higher than that of the pairing of the first and second monomers. E.g., when the first and second monomers occupy complementary positions they either do not pair and have no substantial level of H-bonding, or form a weaker bond than one of them would form with a naturally occurring monomer, and reduce the stability of that duplex, but when the duplex dissociates at least one of the strands will form a duplex with a target in which the selected monomer will promote stability, e.g., the monomer will form a more stable pair with a naturally occurring monomer in the target sequence than the pairing it formed in the iRNA agent.
An example of such a pairing is 2-amino A and either of a 2-thio pyrimidine analog of U or T.
When placed in complementary positions of the iRNA agent these monomers will pair very poorly and will minimize stability. However, a duplex is formed between 2 amino A and the U of a naturally occurring target, or a duplex is between 2-thio U and the A of a naturally occurring target or 2-thio T and the A of a naturally occurring target will have a relatively higher free energy of dissociation and be more stable. This is shown in the FIG. 1.
The pair shown in FIG. 1 (the 2-amino A and the 2-s U and T) is exemplary. In another embodiment, the monomer at the selected position in the sense strand can be a universal pairing moiety. A universal pairing agent will form some level of H bonding with more than one and preferably all other naturally occurring monomers. An example of a universal pairing moiety is a monomer which includes 3-nitro pyrrole. (Examples of other candidate universal base analogs can be found in the art, e.g., in Loakes, 2001, NAR 29: 2437-2447, hereby incorporated by reference. Examples can also be found in the section on Universal Bases below.) In these cases the monomer at the corresponding position of the anti-sense strand can be chosen for its ability to form a duplex with the target and can include, e.g., A, U, G, or C.
In another aspect, the invention features, an iRNA agent which includes: a sense sequence, which preferably does not target a sequence in a subject, and an anti-sense sequence, which targets a target gene in a subject. The sense and anti-sense sequences have sufficient complementarity to each other to hybridize hybridize, e.g., under physiological conditions, e.g., under physiological conditions but not in contact with a helicase or other unwinding enzyme. In a duplex region of the iRNA agent, at a selected or constrained position, the monomers are selected such that:
the monomer in the sense sequence is selected such that, it does not pair, or forms a pair with its corresponding monomer in the anti-sense strand which minimizes stability (e.g., the H bonding formed between the monomer at the selected site in the sense strand and its monomer at the corresponding site in the anti-sense strand are less stable than the H bonds formed by the monomer of the anti-sense sequence and its canonical Watson-Crick partner or, if the monomer in the anti-sense strand includes a modified base, the natural analog of the modified base and its canonical Watson-Crick partner);
the monomer is in the corresponding position in the anti-sense strand is selected such that it maximizes the stability of a duplex it forms with the target sequence, e.g., it forms a canonical Watson-Crick paring with the monomer in the corresponding position on the target stand;
optionally, the monomer in the sense sequence is selected such that, it does not pair, or forms a pair with its corresponding monomer in the anti-sense strand which minimizes stability with an off-target sequence.
The inclusion of such a monomers will have one or more of the following effects: it will destabilize the iRNA agent duplex, it will destabilize interactions between the sense sequence and unintended target sequences, sometimes referred to as off-target sequences, and duplex interactions between the anti-sense strand and the intended target will not be destabilized.
The constraint placed upon the monomers can be applied at a selected site or at more than one selected site. By way of example, the constraint can be applied at more than 1, but less than 3, 4, 5, 6, or 7 sites in an iRNA agent duplex.
A constrained or selected site can be present at a number of positions in the iRNA agent duplex. E.g., a constrained or selected site can be present within 3, 4, 5, or 6 positions from either end, 3′ or 5′ of a duplexed sequence. A constrained or selected site can be present in the middle of the duplex region, e.g., it can be more than 3, 4, 5, or 6, positions from the end of a duplexed region.
The iRNA agent can be selected to target a broad spectrum of genes, including any of the genes described herein.
In a preferred embodiment the iRNA agent has an architecture (architecture refers to one or more of overall length, length of a duplex region, the presence, number, location, or length of overhangs, sing strand versus double strand form) described herein.
E.g., the iRNA agent can be less than 30 nucleotides in length, e.g., 21-23 nucleotides. Preferably, the iRNA is 21 nucleotides in length and there is a duplex region of about 19 pairs. In one embodiment, the iRNA is 21 nucleotides in length, and the duplex region of the iRNA is 19 nucleotides. In another embodiment, the iRNA is greater than 30 nucleotides in length.
In some embodiment the duplex region of the iRNA agent will have, mismatches, in addition to the selected or constrained site or sites. Preferably it will have no more than 1, 2, 3, 4, or 5 bases, which do not form canonical Watson-Crick pairs or which do not hybridize. Overhangs are discussed in detail elsewhere herein but are preferably about 2 nucleotides in length. The overhangs can be complementary to the gene sequences being targeted or can be other sequence. TT is a preferred overhang sequence. The first and second iRNA agent sequences can also be joined, e.g., by additional bases to form a hairpin, or by other non-base linkers.
One or more selection or constraint parameters can be exercised such that: monomers at the selected site in the sense and anti-sense sequences are both naturally occurring ribonucleotides, or modified ribonucleotides having naturally occurring bases, and when occupying complementary sites in the iRNA agent duplex either do not pair and have no substantial level of H-bonding, or form a non-canonical Watson-Crick pairing and thus form a non-canonical pattern of H bonding, which generally have a lower free energy of dissociation than seen in a Watson-Crick pairing, or otherwise pair to give a free energy of association which is less than that of a preselected value or is less, e.g., than that of a canonical pairing. When one, usually the anti-sense sequence of the iRNA agent sequences forms a duplex with another sequence, generally a sequence in the subject, and generally a target sequence, the monomer forms a classic Watson-Crick pairing with the base in the complementary position on the target, or forms a non-canonical Watson-Crick pairing having a higher free energy of dissociation and a higher Tm than seen in the paring in the iRNA agent. Optionally, when the other sequence of the iRNA agent, usually the sense sequences forms a duplex with another sequence, generally a sequence in the subject, and generally an off-target sequence, the monomer fails to forms a canonical Watson-Crick pairing with the base in the complementary position on the off target sequence, e.g., it forms or forms a non-canonical Watson-Crick pairing having a lower free energy of dissociation and a lower Tm.
By way of example:
the monomer at the selected site in the anti-sense stand includes an A (or a modified base which pairs with T), the corresponding monomer in the target is a T, and the sense strand is chosen from a base which will not pair or which will form a noncanonical pair, e.g., G;
the monomer at the selected site in the anti-sense stand includes a U (or a modified base which pairs with A), the corresponding monomer in the target is an A, and the sense strand is chosen from a monomer which will not pair or which will form a non-canonical pairing, e.g., U or G;
the monomer at the selected site in the anti-sense stand includes a C (or a modified base which pairs with G), the corresponding monomer in the target is a G, and the sense strand is chosen a monomer which will not pair or which will form a non-canonical pairing, e.g., G, Acis, Atrans, or U; or
the monomer at the selected site in the anti-sense stand includes a G (or a modified base which pairs with C), the corresponding monomer in the target is a C, and the sense strand is chosen from a monomer which will not pair or which will form a non-canonical pairing.
In another embodiment a non-naturally occurring or modified monomer or monomers is chosen such that when it occupies complementary a position in an iRNA agent they exhibit a first free energy of dissociation and when one (or both) of them pairs with a naturally occurring monomer, the pair exhibits a second free energy of dissociation, which is usually higher than that of the pairing of the first and second monomers. E.g., when the first and second monomers occupy complementary positions they either do not pair and have no substantial level of H-bonding, or form a weaker bond than one of them would form with a naturally occurring monomer, and reduce the stability of that duplex, but when the duplex dissociates at least one of the strands will form a duplex with a target in which the selected monomer will promote stability, e.g., the monomer will form a more stable pair with a naturally occurring monomer in the target sequence than the pairing it formed in the iRNA agent.
An example of such a pairing is 2-amino A and either of a 2-thio pyrimidine analog of U or T. As is discussed above, when placed in complementary positions of the iRNA agent these monomers will pair very poorly and will minimize stability. However, a duplex is formed between 2 amino A and the U of a naturally occurring target, or a duplex is formed between 2-thio U and the A of a naturally occurring target or 2-thio T and the A of a naturally occurring target will have a relatively higher free energy of dissociation and be more stable.
The monomer at the selected position in the sense strand can be a universal pairing moiety. A universal pairing agent will form some level of H bonding with more than one and preferably all other naturally occurring monomers. An examples of a universal pairing moiety is a monomer which includes 3-nitro pyrrole. Examples of other candidate universal base analogs can be found in the art, e.g., in Loakes, 2001, NAR 29: 2437-2447, hereby incorporated by reference. In these cases the monomer at the corresponding position of the anti-sense strand can be chosen for its ability to form a duplex with the target and can include, e.g., A, U, G, or C.
In another aspect, the invention features, an iRNA agent which includes:
a sense sequence, which preferably does not target a sequence in a subject, and an anti-sense sequence, which targets a plurality of target sequences in a subject, wherein the targets differ in sequence at only 1 or a small number, e.g., no more than 5, 4, 3 or 2 positions. The sense and anti-sense sequences have sufficient complementarity to each other to hybridize, e.g., under physiological conditions, e.g., under physiological conditions but not in contact with a helicase or other unwinding enzyme. In the sequence of the anti-sense strand of the iRNA agent is selected such that at one, some, or all of the positions which correspond to positions that differ in sequence between the target sequences, the anti-sense strand will include a monomer which will form H-bonds with at least two different target sequences. In a preferred example the anti-sense sequence will include a universal or promiscuous monomer, e.g., a monomer which includes 5-nitro pyrrole, 2-amino A, 2-thio U or 2-thio T, or other universal base referred to herein.
In a preferred embodiment the iRNA agent targets repeated sequences (which differ at only one or a small number of positions from each other) in a single gene, a plurality of genes, or a viral genome, e.g., the HCV genome.
An embodiment is illustrated in the FIGS. 2 and 3.
In another aspect, the invention features, determining, e.g., by measurement or calculation, the stability of a pairing between monomers at a selected or constrained position in the iRNA agent duplex, and preferably determining the stability for the corresponding pairing in a duplex between a sequence form the iRNA agent and another RNA, e.g., a target sequence. The determinations can be compared. An iRNA agent thus analyzed can be used in the development of a further modified iRNA agent or can be administered to a subject. This analysis can be performed successively to refine or design optimized iRNA agents.
In another aspect, the invention features, a kit which includes one or more of the following an iRNA described herein, a sterile container in which the iRNA agent is disclosed, and instructions for use.
In another aspect, the invention features, an iRNA agent containing a constrained sequence made by a method described herein. The iRNA agent can target one or more of the genes referred to herein.
iRNA agents having constrained or selected sites, e.g., as described herein, can be used in any way described herein. Accordingly, they iRNA agents having constrained or selected sites, e.g., as described herein, can be used to silence a target, e.g., in any of the methods described herein and to target any of the genes described herein or to treat any of the disorders described herein. iRNA agents having constrained or selected sites, e.g., as described herein, can be incorporated into any of the formulations or preparations, e.g., pharmaceutical or sterile preparations described herein. iRNA agents having constrained or selected sites, e.g., as described herein, can be administered by any of the routes of administration described herein.
The term “other than canonical Watson-Crick pairing” as used herein, refers to a pairing between a first monomer in a first sequence and a second monomer at the corresponding position in a second sequence of a duplex in which one or more of the following is true: (1) there is essentially no pairing between the two, e.g., there is no significant level of H bonding between the monomers or binding between the monomers does not contribute in any significant way to the stability of the duplex; (2) the monomers are a non-canonical paring of monomers having a naturally occurring bases, i.e., they are other than A-T, A-U, or G-C, and they form monomer-monomer H bonds, although generally the H bonding pattern formed is less strong than the bonds formed by a canonical pairing; or (3) at least one of the monomers includes a non-naturally occurring bases and the H bonds formed between the monomers is, preferably formed is less strong than the bonds formed by a canonical pairing, namely one or more of A-T, A-U, G-C.
The term “off-target” as used herein, refers to a sequence other than the sequence to be silenced.
Universal Bases: “wild-cards”; shape-based complementarity
Bi-stranded, multisite replication of a base pair between difluorotoluene and adenine: confirmation by ‘inverse’ sequencing. Liu, D.; Moran, S.; Kool, E. T. Chem. Biol., 1997, 4, 919-926)




(Importance of terminal base pair hydrogen-bonding in 3′-end proofreading by the Klenow fragment of DNA polymerase I. Morales, J. C.; Kool, E. T. Biochemistry, 2000, 39, 2626-2632)
(Selective and stable DNA base pairing without hydrogen bonds. Matray, T, J.; Kool, E. T. J. Am. Chem. Soc., 1998, 120, 6191-6192)




(Difluorotoluene, a nonpolar isostere for thymine, codes specifically and efficiently for adenine in DNA replication. Moran, S. Ren, R. X.-F.; Rumney IV, S.; Kool, E. T. J. Am. Chem. Soc., 1997, 119, 2056-2057)




(Structure and base pairing properties of a replicable nonpolar isostere for deoxyadenosine. Guckian, K. M.; Morales, J. C.; Kool, E. T. J. Org. Chem., 1998, 63, 9652-9656)




(Universal bases for hybridization, replication and chain termination. Berger, M.; Wu. Y.; Ogawa, A. K.; McMinn, D. L.; Schultz, P. G.; Romesberg, F. E. Nucleic Acids Res., 2000, 28, 2911-2914)




    (1. Efforts toward the expansion of the genetic alphabet: Information storage and replication with unnatural hydrophobic base pairs. Ogawa, A. K.; Wu, Y.; McMinn, D. L.; Liu, J.; Schultz, P. G.; Romesberg, F. E. J. Am. Chem. Soc., 2000, 122, 3274-3287. 2. Rational design of an unnatural base pair with increased kinetic selectivity. Ogawa, A. K.; Wu. Y.; Berger, M.; Schultz, P. G.; Romesberg, F. E. J. Am. Chem. Soc., 2000, 122, 8803-8804)






(Efforts toward expansion of the genetic alphabet: replication of DNA with three base pairs. Tae, E. L.; Wu, Y.; Xia, G.; Schultz, P. G.; Romesberg, F. E. J. Am. Chem. Soc., 2001, 123, 7439-7440)




(1. Efforts toward expansion of the genetic alphabet: Optimization of interbase hydrophobic interactions. Wu, Y.; Ogawa, A. K.; Berger, M.; McMinn, D. L.; Schultz, P. G.; Romesberg, F. E. J. Am. Chem. Soc., 2000, 122, 7621-7632. 2. Efforts toward expansion of genetic alphabet: DNA polymerase recognition of a highly stable, self-pairing hydrophobic base. McMinn, D. L.; Ogawa. A. K.; Wu, Y.; Liu, J.; Schultz, P. G.; Romesberg, F. E. J. Am. Chem. Soc., 1999, 121, 11585-11586)
(A stable DNA duplex containing a non-hydrogen-bonding and non-shape complementary base couple: Interstrand stacking as the stability determining factor. Brotschi, C.; Haberli, A.; Leumann, C, J. Angew. Chem. Int. Ed., 2001, 40, 3012-3014)
(2,2′-Bipyridine Ligandoside: A novel building block for modifying DNA with intra-duplex metal complexes. Weizman, H.; Tor, Y. J. Am. Chem. Soc., 2001, 123, 3375-3376)




(Minor groove hydration is critical to the stability of DNA duplexes. Lan, T.; McLaughlin, L. W. J. Am. Chem. Soc., 2000, 122, 6512-13)




(Effect of the Universal base 3-nitropyrrole on the selectivity of neighboring natural bases. Oliver, J. S.; Parker, K. A.; Suggs, J. W. Organic Lett., 2001, 3, 1977-1980. 2. Effect of the 1-(2′-deoxy-β-D-ribofuranosyl)-3-nitropyrrol residue on the stability of DNA duplexes and triplexes. Amosova, O.; George J.; Fresco, J. R. Nucleic Acids Res., 1997, 25, 1930-1934. 3. Synthesis, structure and deoxyribonucleic acid sequencing with a universal nucleosides: 1-(2′-deoxy-β-D-ribofuranosyl)-3-nitropprole. Bergstrom, D. E.; Zhang, P.; Toma, P. H.; Andrews, P. C.; Nichols, R. J. Am. Chem. Soc., 1995, 117, 1201-1209)




(Model studies directed toward a general triplex DNA recognition scheme: a novel DNA base that binds a CG base-pair in an organic solvent. Zimmerman, S. C.; Schmitt, P. J. Am. Chem. Soc., 1995, 117, 10769-10770)




(A universal, photocleavable DNA base: nitropiperonyl 2′-deoxyriboside. J. Org. Chem., 2001, 66, 2067-2071)




(Recognition of a single guanine bulge by 2-acylamino-1,8-naphthyridine. Nakatani, K.; Sando, S.; Saito, I. J. Am. Chem. Soc., 2000, 122, 2172-2177. b. Specific binding of 2-amino-1,8-naphthyridine into single guanine bulge as evidenced by photooxidation of GC doublet, Nakatani, K.; Sando, S.; Yoshida, K.; Saito, I. Bioorg. Med. Chem. Lett., 2001, 11, 335-337)




Other universal bases can have the following formulas:





wherein:
Q is N or CR44;
Q′ is N or CR45;
Q′′ is N or CR47;
Q′′′ is N or CR49;
Qiv is N or CR50;
R44 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, or when taken together with R45 forms —OCH2O—;
R45 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, or when taken together with R44 or R46 forms —OCH2O—;
R46 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, or when taken together with R45 or R47 forms —OCH2O—;
R47 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, or when taken together with R46 or R48 forms —OCH2O—;
R48 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, or when taken together with R47 forms —OCH2O—;
R49 R50, R51, R52, R53, R54, R57, R58, R59, R60, R61, R62, R63, R64, R65, R66, R67, R68, R69, R70, R71, and R72 are each independently selected from hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C2-C6 alkynyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, NC(O)R17, or NC(O)Ro;
R55 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C2-C6 alkynyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, NC(O)R17, or NC(O)Ro, or when taken together with R56 forms a fused aromatic ring which may be optionally substituted;
R56 is hydrogen, halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C2-C6 alkynyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, NC(O)R17, or NC(O)Ro, or when taken together with R55 forms a fused aromatic ring which may be optionally substituted;
R17 is halo, NH2, NHRb, or NRbRc;
Rb is C1-C6 alkyl or a nitrogen protecting group;
Rc is C1-C6 alkyl; and
Ro is alkyl optionally substituted with halo, hydroxy, nitro, protected hydroxy, NH2, NHRb, or NRbRc, C1-C6 alkyl, C2-C6 alkynyl, C6-C10 aryl, C6-C10 heteroaryl, C3-C8 heterocyclyl, NC(O)R17, or NC(O)Ro.
Examples of universal bases include:







In one aspect, the invention features methods of producing iRNA agents, e.g., sRNA agents, e.g. an sRNA agent described herein, having the ability to mediate RNAi. These iRNA agents can be formulated for administration to a subject.
In another aspect, the invention features a method of administering an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, to a subject (e.g., a human subject). The method includes administering a unit dose of the iRNA agent, e.g., a sRNA agent, e.g., double stranded sRNA agent that (a) the double-stranded part is 19-25 nucleotides (nt) long, preferably 21-23 nt, (b) is complementary to a target RNA (e.g., an endogenous or pathogen target RNA), and, optionally, (c) includes at least one 3′ overhang 1-5 nucleotide long. In one embodiment, the unit dose is less than 1.4 mg per kg of bodyweight, or less than 10, 5, 2, 1, 0.5, 0.1, 0.05, 0.01, 0.005, 0.001, 0.0005, 0.0001, 0.00005 or 0.00001 mg per kg of bodyweight, and less than 200 nmole of RNA agent (e.g. about 4.4×1016 copies) per kg of bodyweight, or less than 1500, 750, 300, 150, 75, 15, 7.5, 1.5, 0.75, 0.15, 0.075, 0.015, 0.0075, 0.0015, 0.00075, 0.00015 nmole of RNA agent per kg of bodyweight.
The defined amount can be an amount effective to treat or prevent a disease or disorder, e.g., a disease or disorder associated with the target RNA. The unit dose, for example, can be administered by injection (e.g., intravenous or intramuscular), an inhaled dose, or a topical application. Particularly preferred dosages are less than 2, 1, or 0.1 mg/kg of body weight.
In a preferred embodiment, the unit dose is administered less frequently than once a day, e.g., less than every 2, 4, 8 or 30 days. In another embodiment, the unit dose is not administered with a frequency (e.g., not a regular frequency). For example, the unit dose may be administered a single time.
In one embodiment, the effective dose is administered with other traditional therapeutic modalities. In one embodiment, the subject has a viral infection and the modality is an antiviral agent other than an iRNA agent, e.g., other than a double-stranded iRNA agent, or sRNA agent. In another embodiment, the subject has atherosclerosis and the effective dose of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, is administered in combination with, e.g., after surgical intervention, e.g., angioplasty.
In one embodiment, a subject is administered an initial dose and one or more maintenance doses of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). The maintenance dose or doses are generally lower than the initial dose, e.g., one-half less of the initial dose. A maintenance regimen can include treating the subject with a dose or doses ranging from 0.01 μg to 1.4 mg/kg of body weight per day, e.g., 10, 1, 0.1, 0.01, 0.001, or 0.00001 mg per kg of bodyweight per day. The maintenance doses are preferably administered no more than once every 5, 10, or 30 days.
In one embodiment, the iRNA agent pharmaceutical composition includes a plurality of iRNA agent species. In another embodiment, the iRNA agent species has sequences that are non-overlapping and non-adjacent to another species with respect to a naturally occurring target sequence. In another embodiment, the plurality of iRNA agent species is specific for different naturally occurring target genes. In another embodiment, the iRNA agent is allele specific.
The inventors have discovered that iRNA agents described herein can be administered to mammals, particularly large mammals such as nonhuman primates or humans in a number of ways.
In one embodiment, the administration of the iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, composition is parenteral, e.g. intravenous (e.g., as a bolus or as a diffusible infusion), intradermal, intraperitoneal, intramuscular, intrathecal, intraventricular, intracranial, subcutaneous, transmucosal, buccal, sublingual, endoscopic, rectal, oral, vaginal, topical, pulmonary, intranasal, urethral or ocular. Administration can be provided by the subject or by another person, e.g., a health care provider. The medication can be provided in measured doses or in a dispenser that delivers a metered dose. Selected modes of delivery are discussed in more detail below.
The invention provides methods, compositions, and kits, for rectal administration or delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes a an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of a iRNA agent described herein, e.g., a iRNA agent having a double stranded region of less than 40, and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered rectally, e.g., introduced through the rectum into the lower or upper colon. This approach is particularly useful in the treatment of, inflammatory disorders, disorders characterized by unwanted cell proliferation, e.g., polyps, or colon cancer.
In some embodiments the medication is delivered to a site in the colon by introducing a dispensing device, e.g., a flexible, camera-guided device similar to that used for inspection of the colon or removal of polyps, which includes means for delivery of the medication.
In one embodiment, the rectal administration of the iRNA agent is by means of an enema. The iRNA agent of the enema can be dissolved in a saline or buffered solution.
In another embodiment, the rectal administration is by means of a suppository. The suppository can include other ingredients, e.g., an excipient, e.g., cocoa butter or hydropropylmethylcellulose.
The invention also provides methods, compositions, and kits for oral delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of a iRNA described herein, e.g., a iRNA agent having a double stranded region of less than 40 and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered orally.
Oral administration can be in the form of tablets, capsules, gel capsules, lozenges, troches or liquid syrups. In a preferred embodiment the composition is applied topically to a surface of the oral cavity.
The invention also provides methods, compositions, and kits for buccal delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of iRNA agent having a double stranded region of less than 40 and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered to the buccal cavity. The medication can be sprayed into the buccal cavity or applied directly, e.g., in a liquid, solid, or gel form to a surface in the buccal cavity. This administration is particularly desirable for the treatment of inflammations of the buccal cavity, e.g., the gums or tongue, e.g., in one embodiment, the buccal administration is by spraying into the cavity, e.g., without inhalation, from a dispenser, e.g., a metered dose spray dispenser that dispenses the pharmaceutical composition and a propellant.
The invention also provides methods, compositions, and kits for ocular delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of a iRNA agent described herein, e.g., a sRNA agent having a double stranded region of less than 40 and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered to ocular tissue.
The medications can be applied to the surface of the eye or nearby tissue, e.g., the inside of the eyelid. It can be applied topically, e.g., by spraying, in drops, as an eyewash, or an ointment. Administration can be provided by the subject or by another person, e.g., a health care provider. The medication can be provided in measured doses or in a dispenser that delivers a metered dose.
The medication can also be administered to the interior of the eye, and can be introduced by a needle or other delivery device which can introduce it to a selected area or structure.
Ocular treatment is particularly desirable for treating inflammation of the eye or nearby tissue.
The invention also provides methods, compositions, and kits for delivery of iRNA agents described herein to or through the skin.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of a iRNA agent described herein, e.g., a sRNA agent having a double stranded region of less than 40 and preferably less than 30 nucleotides and one or two 1-3 nucleotide single strand 3′ overhangs can be administered directly to the skin.
The medication can be applied topically or delivered in a layer of the skin, e.g., by the use of a microneedle or a battery of microneedles which penetrate into the skin, but preferably not into the underlying muscle tissue.
In one embodiment, the administration of the iRNA agent composition is topical. In another embodiment, topical administration delivers the composition to the dermis or epidermis of a subject. In other embodiments the topical administration is in the form of transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids or powders. A composition for topical administration can be formulated as a liposome, micelle, emulsion, or other lipophilic molecular assembly.
In another embodiment, the transdermal administration is applied with at least one penetration enhancer. In other embodiments, the penetration can be enhanced with iontophoresis, phonophoresis, and sonophoresis. In another aspect, the invention provides methods, compositions, devices, and kits for pulmonary delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of iRNA agent, e.g., a sRNA agent having a double stranded region of less than 40, preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered to the pulmonary system. Pulmonary administration can be achieved by inhalation or by the introduction of a delivery device into the pulmonary system, e.g., by introducing a delivery device which can dispense the medication.
The preferred method of pulmonary delivery is by inhalation. The medication can be provided in a dispenser which delivers the medication, e.g., wet or dry, in a form sufficiently small such that it can be inhaled. The device can deliver a metered dose of medication. The subject, or another person, can administer the medication.
Pulmonary delivery is effective not only for disorders which directly affect pulmonary tissue, but also for disorders which affect other tissue.
iRNA agents can be formulated as a liquid or nonliquid, e.g., a powder, crystal, or aerosol for pulmonary delivery.
In another aspect, the invention provides methods, compositions, devices, and kits for nasal delivery of iRNA agents described herein. Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of iRNA agent, e.g., a sRNA agent having a double stranded region of less than 40 and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered nasally. Nasal administration can be achieved by introduction of a delivery device into the nose, e.g., by introducing a delivery device which can dispense the medication.
The preferred method of nasal delivery is by spray, aerosol, liquid, e.g., by drops, of by topical administration to a surface of the nasal cavity. The medication can be provided in a dispenser which delivery of the medication, e.g., wet or dry, in a form sufficiently small such that it can be inhaled. The device can deliver a metered dose of medication. The subject, or another person, can administer the medication.
Nasal delivery is effective not only for disorders which directly affect nasal tissue, but also for disorders which affect other tissue
iRNA agents can be formulated as a liquid or nonliquid, e.g., a powder, crystal, or for nasal delivery.
In another embodiment, the iRNA agent is packaged in a viral natural capsid or in a chemically or enzymatically produced artificial capsid or structure derived therefrom.
In one aspect, of the invention, the dosage of a pharmaceutical composition including a iRNA agent is administered in order to alleviate the symptoms of a disease state, e.g., cancer or a cardiovascular disease.
In another aspect, gene expression in a subject is modulated by administering a pharmaceutical composition including a iRNA agent. In other embodiments, a subject is treated with the pharmaceutical composition by any of the methods mentioned above. In another embodiment, the subject has cancer.
An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) composition can be administered as a liposome. For example, the composition can be prepared by a method that includes: (1) contacting a iRNA agent with an amphipathic cationic lipid conjugate in the presence of a detergent; and (2) removing the detergent to form a iRNA agent and cationic lipid complex. In one embodiment, the detergent is cholate, deoxycholate, lauryl sarcosine, octanoyl sucrose, CHAPS (3-[(3-cholamidopropyl)-di-methylamine]-2-hydroxyl-1-propane), novel-δ-D-glucopyranoside, lauryl dimethylamine oxide, or octylglucoside. The iRNA agent can be an sRNA agent. The method can include preparing a composition that includes a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
In another aspect, a subject is treated by administering a defined amount of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent) composition that is in a powdered form. In one embodiment, the powder is a collection of microparticles. In one embodiment, the powder is a collection of crystalline particles. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
In one aspect, a subject is treated by administering a defined amount of a iRNA agent composition that is prepared by a method that includes spray-drying, i.e. atomizing a liquid solution, emulsion, or suspension, immediately exposing the droplets to a drying gas, and collecting the resulting porous powder particles. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
In one aspect, the iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), is provided in a powdered, crystallized or other finely divided form, with or without a carrier, e.g., a micro- or nano-particle suitable for inhalation or other pulmonary delivery. In one embodiment, this includes providing an aerosol preparation, e.g., an aerosolized spray-dried composition. The aerosol composition can be provided in and/or dispensed by a metered dose delivery device.
In another aspect, a subject is treated for a condition treatable by inhalation. In one embodiment, this method includes aerosolizing a spray-dried iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) composition and inhaling the aerosolized composition. The iRNA agent can be an sRNA. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
In another aspect, the invention features a method of treating a subject that includes: administering a composition including an effective/defined amount of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), wherein the composition is prepared by a method that includes spray-drying, lyophilization, vacuum drying, evaporation, fluid bed drying, or a combination of these techniques
In another aspect, the invention features a method that includes: evaluating a parameter related to the abundance of a transcript in a cell of a subject; comparing the evaluated parameter to a reference value; and if the evaluated parameter has a preselected relationship to the reference value (e.g., it is greater), administering a iRNA agent (or a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes a iRNA agent or precursor thereof) to the subject. In one embodiment, the iRNA agent includes a sequence that is complementary to the evaluated transcript. For example, the parameter can be a direct measure of transcript levels, a measure of a protein level, a disease or disorder symptom or characterization (e.g., rate of cell proliferation and/or tumor mass, viral load,)
In another aspect, the invention features a method that includes: administering a first amount of a composition that comprises an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) to a subject, wherein the iRNA agent includes a strand substantially complementary to a target nucleic acid; evaluating an activity associated with a protein encoded by the target nucleic acid; wherein the evaluation is used to determine if a second amount should be administered. In a preferred embodiment the method includes administering a second amount of the composition, wherein the timing of administration or dosage of the second amount is a function of the evaluating. The method can include other features described herein.
In another aspect, the invention features a method of administering a source of a double-stranded iRNA agent (ds iRNA agent) to a subject. The method includes administering or implanting a source of a ds iRNA agent, e.g., a sRNA agent, that (a) includes a double-stranded region that is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to a target RNA (e.g., an endogenous RNA or a pathogen RNA), and, optionally, (c) includes at least one 3′ overhang 1-5 nt long. In one embodiment, the source releases ds iRNA agent over time, e.g. the source is a controlled or a slow release source, e.g., a microparticle that gradually releases the ds iRNA agent. In another embodiment, the source is a pump, e.g., a pump that includes a sensor or a pump that can release one or more unit doses.
In one aspect, the invention features a pharmaceutical composition that includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) including a nucleotide sequence complementary to a target RNA, e.g., substantially and/or exactly complementary. The target RNA can be a transcript of an endogenous human gene. In one embodiment, the iRNA agent (a) is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to an endogenous target RNA, and, optionally, (c) includes at least one 3′ overhang 1-5 nt long. In one embodiment, the pharmaceutical composition can be an emulsion, microemulsion, cream, jelly, or liposome.
In one example the pharmaceutical composition includes an iRNA agent mixed with a topical delivery agent. The topical delivery agent can be a plurality of microscopic vesicles. The microscopic vesicles can be liposomes. In a preferred embodiment the liposomes are cationic liposomes.
In another aspect, the pharmaceutical composition includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) admixed with a topical penetration enhancer. In one embodiment, the topical penetration enhancer is a fatty acid. The fatty acid can be arachidonic acid, oleic acid, lauric acid, caprylic acid, capric acid, myristic acid, palmitic acid, stearic acid, linoleic acid, linolenic acid, dicaprate, tricaprate, monolein, dilaurin, glyceryl 1-monocaprate, 1-dodecylazacycloheptan-2-one, an acylcarnitine, an acylcholine, or a C1-10 alkyl ester, monoglyceride, diglyceride or pharmaceutically acceptable salt thereof.
In another embodiment, the topical penetration enhancer is a bile salt. The bile salt can be cholic acid, dehydrocholic acid, deoxycholic acid, glucholic acid, glycholic acid, glycodeoxycholic acid, taurocholic acid, taurodeoxycholic acid, chenodeoxycholic acid, ursodeoxycholic acid, sodium tauro-24,25-dihydro-fusidate, sodium glycodihydrofusidate, polyoxyethylene-9-lauryl ether or a pharmaceutically acceptable salt thereof.
In another embodiment, the penetration enhancer is a chelating agent. The chelating agent can be EDTA, citric acid, a salicyclate, a N-acyl derivative of collagen, laureth-9, an N-amino acyl derivative of a beta-diketone or a mixture thereof.
In another embodiment, the penetration enhancer is a surfactant, e.g., an ionic or nonionic surfactant. The surfactant can be sodium lauryl sulfate, polyoxyethylene-9-lauryl ether, polyoxyethylene-20-cetyl ether, a perfluorchemical emulsion or mixture thereof.
In another embodiment, the penetration enhancer can be selected from a group consisting of unsaturated cyclic ureas, 1-alkyl-alkones, 1-alkenylazacyclo-alakanones, steroidal anti-inflammatory agents and mixtures thereof. In yet another embodiment the penetration enhancer can be a glycol, a pyrrol, an azone, or a terpenes.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a form suitable for oral delivery. In one embodiment, oral delivery can be used to deliver an iRNA agent composition to a cell or a region of the gastro-intestinal tract, e.g., small intestine, colon (e.g., to treat a colon cancer), and so forth. The oral delivery form can be tablets, capsules or gel capsules. In one embodiment, the iRNA agent of the pharmaceutical composition modulates expression of a cellular adhesion protein, modulates a rate of cellular proliferation, or has biological activity against eukaryotic pathogens or retroviruses. In another embodiment, the pharmaceutical composition includes an enteric material that substantially prevents dissolution of the tablets, capsules or gel capsules in a mammalian stomach. In a preferred embodiment the enteric material is a coating. The coating can be acetate phthalate, propylene glycol, sorbitan monoleate, cellulose acetate trimellitate, hydroxy propyl methylcellulose phthalate or cellulose acetate phthalate.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a penetration enhancer. The penetration enhancer can be a bile salt or a fatty acid. The bile salt can be ursodeoxycholic acid, chenodeoxycholic acid, and salts thereof. The fatty acid can be capric acid, lauric acid, and salts thereof.
In another embodiment, the oral dosage form of the pharmaceutical composition includes an excipient. In one example the excipient is polyethyleneglycol. In another example the excipient is precirol.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a plasticizer. The plasticizer can be diethyl phthalate, triacetin dibutyl sebacate, dibutyl phthalate or triethyl citrate.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent and a delivery vehicle. In one embodiment, the iRNA agent is (a) is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to an endogenous target RNA, and, optionally, (c) includes at least one 3′ overhang 1-5 nucleotides long.
In one embodiment, the delivery vehicle can deliver an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) to a cell by a topical route of administration. The delivery vehicle can be microscopic vesicles. In one example the microscopic vesicles are liposomes. In a preferred embodiment the liposomes are cationic liposomes. In another example the microscopic vesicles are micelles.
In one aspect, the invention features a method for making a pharmaceutical composition, the method including: (1) contacting an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent) with a amphipathic cationic lipid conjugate in the presence of a detergent; and (2) removing the detergent to form a iRNA agent and cationic lipid complex.
In another aspect, the invention features a pharmaceutical composition produced by a method including: (1) contacting an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent) with a amphipathic cationic lipid conjugate in the presence of a detergent; and (2) removing the detergent to form a iRNA agent and cationic lipid complex. In one embodiment, the detergent is cholate, deoxycholate, lauryl sarcosine, octanoyl sucrose, CHAPS (3-[(3-cholamidopropyl)-di-methylamine]-2-hydroxyl-1-propane), novel-δ-D-glucopyranoside, lauryl dimethylamine oxide, or octylglucoside. In another embodiment, the amphipathic cationic lipid conjugate is biodegradable. In yet another embodiment the pharmaceutical composition includes a targeting ligand.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in an injectable dosage form. In one embodiment, the injectable dosage form of the pharmaceutical composition includes sterile aqueous solutions or dispersions and sterile powders. In a preferred embodiment the sterile solution can include a diluent such as water; saline solution; fixed oils, polyethylene glycols, glycerin, or propylene glycol.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in oral dosage form. In one embodiment, the oral dosage form is selected from the group consisting of tablets, capsules and gel capsules. In another embodiment, the pharmaceutical composition includes an enteric material that substantially prevents dissolution of the tablets, capsules or gel capsules in a mammalian stomach. In a preferred embodiment the enteric material is a coating. The coating can be acetate phthalate, propylene glycol, sorbitan monoleate, cellulose acetate trimellitate, hydroxy propyl methyl cellulose phthalate or cellulose acetate phthalate. In one embodiment, the oral dosage form of the pharmaceutical composition includes a penetration enhancer, e.g., a penetration enhancer described herein.
In another embodiment, the oral dosage form of the pharmaceutical composition includes an excipient. In one example the excipient is polyethyleneglycol. In another example the excipient is precirol.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a plasticizer. The plasticizer can be diethyl phthalate, triacetin dibutyl sebacate, dibutyl phthalate or triethyl citrate.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a rectal dosage form. In one embodiment, the rectal dosage form is an enema. In another embodiment, the rectal dosage form is a suppository.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a vaginal dosage form. In one embodiment, the vaginal dosage form is a suppository. In another embodiment, the vaginal dosage form is a foam, cream, or gel.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a pulmonary or nasal dosage form. In one embodiment, the iRNA agent is incorporated into a particle, e.g., a macroparticle, e.g., a microsphere. The particle can be produced by spray drying, lyophilization, evaporation, fluid bed drying, vacuum drying, or a combination thereof. The microsphere can be formulated as a suspension, a powder, or an implantable solid.
In one aspect, the invention features a spray-dried iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) composition suitable for inhalation by a subject, including: (a) a therapeutically effective amount of a iRNA agent suitable for treating a condition in the subject by inhalation; (b) a pharmaceutically acceptable excipient selected from the group consisting of carbohydrates and amino acids; and (c) optionally, a dispersibility-enhancing amount of a physiologically-acceptable, water-soluble polypeptide.
In one embodiment, the excipient is a carbohydrate. The carbohydrate can be selected from the group consisting of monosaccharides, disaccharides, trisaccharides, and polysaccharides. In a preferred embodiment the carbohydrate is a monosaccharide selected from the group consisting of dextrose, galactose, mannitol, D-mannose, sorbitol, and sorbose. In another preferred embodiment the carbohydrate is a disaccharide selected from the group consisting of lactose, maltose, sucrose, and trehalose.
In another embodiment, the excipient is an amino acid. In one embodiment, the amino acid is a hydrophobic amino acid. In a preferred embodiment the hydrophobic amino acid is selected from the group consisting of alanine, isoleucine, leucine, methionine, phenylalanine, proline, tryptophan, and valine. In yet another embodiment the amino acid is a polar amino acid. In a preferred embodiment the amino acid is selected from the group consisting of arginine, histidine, lysine, cysteine, glycine, glutamine, serine, threonine, tyrosine, aspartic acid and glutamic acid.
In one embodiment, the dispersibility-enhancing polypeptide is selected from the group consisting of human serum albumin, a-lactalbumin, trypsinogen, and polyalanine.
In one embodiment, the spray-dried iRNA agent composition includes particles having a mass median diameter (MMD) of less than 10 microns. In another embodiment, the spray-dried iRNA agent composition includes particles having a mass median diameter of less than 5 microns. In yet another embodiment the spray-dried iRNA agent composition includes particles having a mass median aerodynamic diameter (MMAD) of less than 5 microns.
In certain other aspects, the invention provides kits that include a suitable container containing a pharmaceutical formulation of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). In certain embodiments the individual components of the pharmaceutical formulation may be provided in one container. Alternatively, it may be desirable to provide the components of the pharmaceutical formulation separately in two or more containers, e.g., one container for an iRNA agent preparation, and at least another for a carrier compound. The kit may be packaged in a number of different configurations such as one or more containers in a single box. The different components can be combined, e.g., according to instructions provided with the kit. The components can be combined according to a method described herein, e.g., to prepare and administer a pharmaceutical composition. The kit can also include a delivery device.
In another aspect, the invention features a device, e.g., an implantable device, wherein the device can dispense or administer a composition that includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), e.g., a iRNA agent that silences an endogenous transcript. In one embodiment, the device is coated with the composition. In another embodiment the iRNA agent is disposed within the device. In another embodiment, the device includes a mechanism to dispense a unit dose of the composition. In other embodiments the device releases the composition continuously, e.g., by diffusion. Exemplary devices include stents, catheters, pumps, artificial organs or organ components (e.g., artificial heart, a heart valve, etc.), and sutures.
As used herein, the term “crystalline” describes a solid having the structure or characteristics of a crystal, i.e., particles of three-dimensional structure in which the plane faces intersect at definite angles and in which there is a regular internal structure. The compositions of the invention may have different crystalline forms. Crystalline forms can be prepared by a variety of methods, including, for example, spray drying.
As used herein, “specifically hybridizable” and “complementary” are terms which are used to indicate a sufficient degree of complementarity such that stable and specific binding occurs between a compound of the invention and a target RNA molecule. Specific binding requires a sufficient degree of complementarity to avoid non-specific binding of the oligomeric compound to non-target sequences under conditions in which specific binding is desired, i.e., under physiological conditions in the case of in vivo assays or therapeutic treatment, or in the case of in vitro assays, under conditions in which the assays are performed. The non-target sequences typically differ by at least 5 nucleotides.
In one embodiment, an iRNA agent is “sufficiently complementary” to a target RNA, e.g., a target mRNA, such that the iRNA agent silences production of protein encoded by the target mRNA. In another embodiment, the iRNA agent is “exactly complementary” to a target RNA, e.g., the target RNA and the iRNA agent anneal, preferably to form a hybrid made exclusively of Watson-Crick basepairs in the region of exact complementarity. A “sufficiently complementary” target RNA can include an internal region (e.g., of at least 10 nucleotides) that is exactly complementary to a target RNA. Moreover, in some embodiments, the iRNA agent specifically discriminates a single-nucleotide difference. In this case, the iRNA agent only mediates RNAi if exact complementary is found in the region (e.g., within 7 nucleotides of) the single-nucleotide difference.
As used herein, the term “oligonucleotide” refers to a nucleic acid molecule (RNA or DNA) preferably of length less than 100, 200, 300, or 400 nucleotides.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention pertains. The materials, methods, and examples are illustrative only and not intended to be limiting. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, useful methods and materials are described below. Other features and advantages of the invention will be apparent from the accompanying drawings and description, and from the claims. The contents of all references, pending patent applications and published patents, cited throughout this application are hereby expressly incorporated by reference. In case of conflict, the present specification, including definitions, will control.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 is a structural representation of base pairing in psuedocomplementary siRNA2.
FIG. 2 is a schematic representation of dual targeting siRNAs (SEQ ID NOs 3952, 3953, 3954, and 3955 respectively) designed to target the HCV genome.
FIG. 3 is a schematic representation of pseudocomplementary, bifunctional siRNAs (SEQ ID NOs 3956, 3957, 3958, and 4087 respectively) designed to target the HCV genome.
FIG. 4 is a general synthetic scheme for incorporation of RRMS monomers into an oligonucleotide.
FIG. 5 is a table of representative RRMS carriers. Panel 1 shows pyrroline-based RRMSs; panel 2 shows 3-hydroxyproline-based RRMSs; panel 3 shows piperidine-based RRMSs; panel 4 shows morpholine and piperazine-based RRMSs; and panel 5 shows decalin-based RRMSs. R1 is succinate or phosphoramidate and R2 is H or a conjugate ligand.
FIG. 6A is a graph depicting levels of luciferase mRNA in livers of CMV-Luc mice (Xanogen) following intervenous injection (iv) of buffer or siRNA into the tail vein. Each bar represents data from one mouse. RNA levels were quantified by QuantiGene Assay (Genospectra, Inc.; Fremont, Calif.)). The Y axis represents chemiluminescence values in counts per second (CPS).
FIG. 6B is a graph depicting levels of luciferase mRNA in livers of CMV-Luc mice (Xanogen). The values are averaged from the data depicted in FIG. 6A.
FIG. 7 is a graph depicting the pharmacokinetics of cholesterol-conjugated and unconjugated siRNA. The diamonds represent the amount of unconjugated 33P-labeled siRNA (ALN-3000) in mouse plasma over time; the squares represent the amount of cholesterol-conjugated 33P-labeled siRNA (ALN-3001) in mouse plasma over time. “L1163” is equivalent to ALN3000; “L1163Chol” is equivalent to ALN-3001.



DETAILED DESCRIPTION
Double-stranded (dsRNA) directs the sequence-specific silencing of mRNA through a process known as RNA interference (RNAi). The process occurs in a wide variety of organisms, including mammals and other vertebrates.
It has been demonstrated that 21-23 nt fragments of dsRNA are sequence-specific mediators of RNA silencing, e.g., by causing RNA degradation. While not wishing to be bound by theory, it may be that a molecular signal, which may be merely the specific length of the fragments, present in these 21-23 nt fragments recruits cellular factors that mediate RNAi. Described herein are methods for preparing and administering these 21-23 nt fragments, and other iRNAs agents, and their use for specifically inactivating gene function. The use of iRNAs agents (or recombinantly produced or chemically synthesized oligonucleotides of the same or similar nature) enables the targeting of specific mRNAs for silencing in mammalian cells. In addition, longer dsRNA agent fragments can also be used, e.g., as described below.
Although, in mammalian cells, long dsRNAs can induce the interferon response which is frequently deleterious, sRNAs do not trigger the interferon response, at least not to an extent that is deleterious to the cell and host. In particular, the length of the iRNA agent strands in an sRNA agent can be less than 31, 30, 28, 25, or 23 nt, e.g., sufficiently short to avoid inducing a deleterious interferon response. Thus, the administration of a composition of sRNA agent (e.g., formulated as described herein) to a mammalian cell can be used to silence expression of a target gene while circumventing the interferon response. Further, use of a discrete species of iRNA agent can be used to selectively target one allele of a target gene, e.g., in a subject heterozygous for the allele.
Moreover, in one embodiment, a mammalian cell is treated with an iRNA agent that disrupts a component of the interferon response, e.g., double stranded RNA (dsRNA)-activated protein kinase PKR. Such a cell can be treated with a second iRNA agent that includes a sequence complementary to a target RNA and that has a length that might otherwise trigger the interferon response.
In a typical embodiment, the subject is a mammal such as a cow, horse, mouse, rat, dog, pig, goat, or a primate. The subject can be a dairy mammal (e.g., a cow, or goat) or other farmed animal (e.g., a chicken, turkey, sheep, pig, fish, shrimp). In a much preferred embodiment, the subject is a human, e.g., a normal individual or an individual that has, is diagnosed with, or is predicted to have a disease or disorder.
Further, because iRNA agent mediated silencing persists for several days after administering the iRNA agent composition, in many instances, it is possible to administer the composition with a frequency of less than once per day, or, for some instances, only once for the entire therapeutic regimen. For example, treatment of some cancer cells may be mediated by a single bolus administration, whereas a chronic viral infection may require regular administration, e.g., once per week or once per month.
A number of exemplary routes of delivery are described that can be used to administer an iRNA agent to a subject. In addition, the iRNA agent can be formulated according to an exemplary method described herein.
iRNA Agent Structure
Described herein are isolated iRNA agents, e.g., RNA molecules, (double-stranded; single-stranded) that mediate RNAi. The iRNA agents preferably mediate RNAi with respect to an endogenous gene of a subject or to a gene of a pathogen.
An “RNA agent” as used herein, is an unmodified RNA, modified RNA, or nucleoside surrogate, all of which are defined herein (see, e.g., the section below entitled RNA Agents). While numerous modified RNAs and nucleoside surrogates are described, preferred examples include those which have greater resistance to nuclease degradation than do unmodified RNAs. Preferred examples include those which have a 2′ sugar modification, a modification in a single strand overhang, preferably a 3′ single strand overhang, or, particularly if single stranded, a 5′ modification which includes one or more phosphate groups or one or more analogs of a phosphate group.
An “iRNA agent” as used herein, is an RNA agent which can, or which can be cleaved into an RNA agent which can, down regulate the expression of a target gene, preferably an endogenous or pathogen target RNA. While not wishing to be bound by theory, an iRNA agent may act by one or more of a number of mechanisms, including post-transcriptional cleavage of a target mRNA sometimes referred to in the art as RNAi, or pre-transcriptional or pre-translational mechanisms. An iRNA agent can include a single strand or can include more than one strands, e.g., it can be a double stranded iRNA agent. If the iRNA agent is a single strand it is particularly preferred that it include a 5′ modification which includes one or more phosphate groups or one or more analogs of a phosphate group.
The iRNA agent should include a region of sufficient homology to the target gene, and be of sufficient length in terms of nucleotides, such that the iRNA agent, or a fragment thereof, can mediate down regulation of the target gene. (For ease of exposition the term nucleotide or ribonucleotide is sometimes used herein in reference to one or more monomeric subunits of an RNA agent. It will be understood herein that the usage of the term “ribonucleotide” or “nucleotide”, herein can, in the case of a modified RNA or nucleotide surrogate, also refer to a modified nucleotide, or surrogate replacement moiety at one or more positions.) Thus, the iRNA agent is or includes a region which is at least partially, and in some embodiments fully, complementary to the target RNA. It is not necessary that there be perfect complementarity between the iRNA agent and the target, but the correspondence must be sufficient to enable the iRNA agent, or a cleavage product thereof, to direct sequence specific silencing, e.g., by RNAi cleavage of the target RNA, e.g., mRNA.
Complementarity, or degree of homology with the target strand, is most critical in the antisense strand. While perfect complementarity, particularly in the antisense strand, is often desired some embodiments can include, particularly in the antisense strand, one or more but preferably 6, 5, 4, 3, 2, or fewer mismatches (with respect to the target RNA). The mismatches, particularly in the antisense strand, are most tolerated in the terminal regions and if present are preferably in a terminal region or regions, e.g., within 6, 5, 4, or 3 nucleotides of the 5′ and/or 3′ terminus. The sense strand need only be sufficiently complementary with the antisense strand to maintain the over all double strand character of the molecule.
As discussed elsewhere herein, an iRNA agent will often be modified or include nucleoside surrogates in addition to the RRMS. Single stranded regions of an iRNA agent will often be modified or include nucleoside surrogates, e.g., the unpaired region or regions of a hairpin structure, e.g., a region which links two complementary regions, can have modifications or nucleoside surrogates. Modification to stabilize one or more 3′- or 5′-terminus of an iRNA agent, e.g., against exonucleases, or to favor the antisense sRNA agent to enter into RISC are also favored. Modifications can include C3 (or C6, C7, C12) amino linkers, thiol linkers, carboxyl linkers, non-nucleotidic spacers (C3, C6, C9, C12, abasic, triethylene glycol, hexaethylene glycol), special biotin or fluorescein reagents that come as phosphoramidites and that have another DMT-protected hydroxyl group, allowing multiple couplings during RNA synthesis.
iRNA agents include: molecules that are long enough to trigger the interferon response (which can be cleaved by Dicer (Bernstein et al. 2001. Nature, 409:363-366) and enter a RISC(RNAi-induced silencing complex)); and, molecules which are sufficiently short that they do not trigger the interferon response (which molecules can also be cleaved by Dicer and/or enter a RISC), e.g., molecules which are of a size which allows entry into a RISC, e.g., molecules which resemble Dicer-cleavage products. Molecules that are short enough that they do not trigger an interferon response are termed sRNA agents or shorter iRNA agents herein. “sRNA agent or shorter iRNA agent” as used herein, refers to an iRNA agent, e.g., a double stranded RNA agent or single strand agent, that is sufficiently short that it does not induce a deleterious interferon response in a human cell, e.g., it has a duplexed region of less than 60 but preferably less than 50, 40, or 30 nucleotide pairs. The sRNA agent, or a cleavage product thereof, can down regulate a target gene, e.g., by inducing RNAi with respect to a target RNA, preferably an endogenous or pathogen target RNA.
Each strand of an sRNA agent can be equal to or less than 30, 25, 24, 23, 22, 21, or 20 nucleotides in length. The strand is preferably at least 19 nucleotides in length. For example, each strand can be between 21 and 25 nucleotides in length. Preferred sRNA agents have a duplex region of 17, 18, 19, 29, 21, 22, 23, 24, or 25 nucleotide pairs, and one or more overhangs, preferably one or two 3′ overhangs, of 2-3 nucleotides.
In addition to homology to target RNA and the ability to down regulate a target gene, an iRNA agent will preferably have one or more of the following properties:
(1) it will be of the Formula 1, 2, 3, or 4 set out in the RNA Agent section below;
(2) if single stranded it will have a 5′ modification which includes one or more phosphate groups or one or more analogs of a phosphate group;
(3) it will, despite modifications, even to a very large number, or all of the nucleosides, have an antisense strand that can present bases (or modified bases) in the proper three dimensional framework so as to be able to form correct base pairing and form a duplex structure with a homologous target RNA which is sufficient to allow down regulation of the target, e.g., by cleavage of the target RNA;
(4) it will, despite modifications, even to a very large number, or all of the nucleosides, still have “RNA-like” properties, i.e., it will possess the overall structural, chemical and physical properties of an RNA molecule, even though not exclusively, or even partly, of ribonucleotide-based content. For example, an iRNA agent can contain, e.g., a sense and/or an antisense strand in which all of the nucleotide sugars contain e.g., 2′ fluoro in place of 2′ hydroxyl. This deoxyribonucleotide-containing agent can still be expected to exhibit RNA-like properties. While not wishing to be bound by theory, the electronegative fluorine prefers an axial orientation when attached to the C2′ position of ribose. This spatial preference of fluorine can, in turn, force the sugars to adopt a C3′-endo pucker. This is the same puckering mode as observed in RNA molecules and gives rise to the RNA-characteristic A-family-type helix. Further, since fluorine is a good hydrogen bond acceptor, it can participate in the same hydrogen bonding interactions with water molecules that are known to stabilize RNA structures. (Generally, it is preferred that a modified moiety at the 2′ sugar position will be able to enter into H-bonding which is more characteristic of the OH moiety of a ribonucleotide than the H moiety of a deoxyribonucleotide. A preferred iRNA agent will: exhibit a C3′-endo pucker in all, or at least 50, 75, 80, 85, 90, or 95% of its sugars; exhibit a C3′-endo pucker in a sufficient amount of its sugars that it can give rise to a the RNA-characteristic A-family-type helix; will have no more than 20, 10, 5, 4, 3, 2, or 1 sugar which is not a C3′-endo pucker structure. These limitations are particularly preferably in the antisense strand;
(5) regardless of the nature of the modification, and even though the RNA agent can contain deoxynucleotides or modified deoxynucleotides, particularly in overhang or other single strand regions, it is preferred that DNA molecules, or any molecule in which more than 50, 60, or 70% of the nucleotides in the molecule, or more than 50, 60, or 70% of the nucleotides in a duplexed region are deoxyribonucleotides, or modified deoxyribonucleotides which are deoxy at the 2′ position, are excluded from the definition of RNA agent.
A “single strand iRNA agent” as used herein, is an iRNA agent which is made up of a single molecule. It may include a duplexed region, formed by intra-strand pairing, e.g., it may be, or include, a hairpin or pan-handle structure. Single strand iRNA agents are preferably antisense with regard to the target molecule. In preferred embodiments single strand iRNA agents are 5′ phosphorylated or include a phosphoryl analog at the 5′ prime terminus. 5′-phosphate modifications include those which are compatible with RISC mediated gene silencing. Suitable modifications include: 5′-monophosphate ((HO)2(O)P—O-5′); 5′-diphosphate ((HO)2(O)P—O—P(HO)(O)—O-5′); 5′-triphosphate ((HO)2(O)P—(HI)(O)P—O—P(HO)(O)—O-5′); 5′-guanosine cap (7-methylated or non-methylated) (7m-G-O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′); 5′-adenosine cap (Appp), and any modified or unmodified nucleotide cap structure (N—O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′); 5′-monothiophosphate (phosphorothioate; (HO)2(S)P—O-5′); 5′-monodithiophosphate (phosphorodithioate; (HO)(HS)(S)P—O-5′), 5′-phosphorothiolate ((HO)2(O)P—S-5′); any additional combination of oxygen/sulfur replaced monophosphate, diphosphate and triphosphates (e.g. 5′-alpha-thiotriphosphate, 5′-gamma-thiotriphosphate, etc.), 5′-phosphoramidates ((HO)2(O)P—NH-5′, (HO)(NH2)(O)P—O-5′), 5′-alkylphosphonates (R=alkyl=methyl, ethyl, isopropyl, propyl, etc., e.g. RP(OH)(O)—O-5′-, (OH)2(O)P-5′-CH2-), 5′-alkyletherphosphonates (R=alkylether=methoxymethyl (MeOCH2-), ethoxymethyl, etc., e.g. RP(OH)(O)—O-5′-). (These modifications can also be used with the antisense strand of a double stranded iRNA.)
A single strand iRNA agent should be sufficiently long that it can enter the RISC and participate in RISC mediated cleavage of a target mRNA. A single strand iRNA agent is at least 14, and more preferably at least 15, 20, 25, 29, 35, 40, or 50 nucleotides in length. It is preferably less than 200, 100, or 60 nucleotides in length.
Hairpin iRNA agents will have a duplex region equal to or at least 17, 18, 19, 29, 21, 22, 23, 24, or 25 nucleotide pairs. The duplex region will preferably be equal to or less than 200, 100, or 50, in length. Preferred ranges for the duplex region are 15-30, 17 to 23, 19 to 23, and 19 to 21 nucleotides pairs in length. The hairpin will preferably have a single strand overhang or terminal unpaired region, preferably the 3′, and preferably of the antisense side of the hairpin. Preferred overhangs are 2-3 nucleotides in length.
A “double stranded (ds) iRNA agent” as used herein, is an iRNA agent which includes more than one, and preferably two, strands in which interchain hybridization can form a region of duplex structure.
The antisense strand of a double stranded iRNA agent should be equal to or at least, 14, 15, 16 17, 18, 19, 25, 29, 40, or 60 nucleotides in length. It should be equal to or less than 200, 100, or 50, nucleotides in length. Preferred ranges are 17 to 25, 19 to 23, and 19 to 21 nucleotides in length.
The sense strand of a double stranded iRNA agent should be equal to or at least 14, 15, 16 17, 18, 19, 25, 29, 40, or 60 nucleotides in length. It should be equal to or less than 200, 100, or 50, nucleotides in length. Preferred ranges are 17 to 25, 19 to 23, and 19 to 21 nucleotides in length.
The double strand portion of a double stranded iRNA agent should be equal to or at least, 14, 15, 16 17, 18, 19, 20, 21, 22, 23, 24, 25, 29, 40, or 60 nucleotide pairs in length. It should be equal to or less than 200, 100, or 50, nucleotides pairs in length. Preferred ranges are 15-30, 17 to 23, 19 to 23, and 19 to 21 nucleotides pairs in length.
In many embodiments, the ds iRNA agent is sufficiently large that it can be cleaved by an endogenous molecule, e.g., by Dicer, to produce smaller ds iRNA agents, e.g., sRNAs agents
It may be desirable to modify one or both of the antisense and sense strands of a double strand iRNA agent. In some cases they will have the same modification or the same class of modification but in other cases the sense and antisense strand will have different modifications, e.g., in some cases it is desirable to modify only the sense strand. It may be desirable to modify only the sense strand, e.g., to inactivate it, e.g., the sense strand can be modified in order to inactivate the sense strand and prevent formation of an active sRNA/protein or RISC. This can be accomplished by a modification which prevents 5′-phosphorylation of the sense strand, e.g., by modification with a 5′-O-methyl ribonucleotide (see Nykänen et al., (2001) ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell 107, 309-321.) Other modifications which prevent phosphorylation can also be used, e.g., simply substituting the 5′-OH by H rather than O-Me. Alternatively, a large bulky group may be added to the 5′-phosphate turning it into a phosphodiester linkage, though this may be less desirable as phosphodiesterases can cleave such a linkage and release a functional sRNA 5′-end. Antisense strand modifications include 5′ phosphorylation as well as any of the other 5′ modifications discussed herein, particularly the 5′ modifications discussed above in the section on single stranded iRNA molecules.
It is preferred that the sense and antisense strands be chosen such that the ds iRNA agent includes a single strand or unpaired region at one or both ends of the molecule. Thus, a ds iRNA agent contains sense and antisense strands, preferable paired to contain an overhang, e.g., one or two 5′ or 3′ overhangs but preferably a 3′ overhang of 2-3 nucleotides. Most embodiments will have a 3′ overhang. Preferred sRNA agents will have single-stranded overhangs, preferably 3′ overhangs, of 1 or preferably 2 or 3 nucleotides in length at each end. The overhangs can be the result of one strand being longer than the other, or the result of two strands of the same length being staggered. 5′ ends are preferably phosphorylated.
Preferred lengths for the duplexed region is between 15 and 30, most preferably 18, 19, 20, 21, 22, and 23 nucleotides in length, e.g., in the sRNA agent range discussed above. sRNA agents can resemble in length and structure the natural Dicer processed products from long dsRNAs. Embodiments in which the two strands of the sRNA agent are linked, e.g., covalently linked are also included. Hairpin, or other single strand structures which provide the required double stranded region, and preferably a 3′ overhang are also within the invention.
The isolated iRNA agents described herein, including ds iRNA agents and sRNA agents can mediate silencing of a target RNA, e.g., mRNA, e.g., a transcript of a gene that encodes a protein. For convenience, such mRNA is also referred to herein as mRNA to be silenced. Such a gene is also referred to as a target gene. In general, the RNA to be silenced is an endogenous gene or a pathogen gene. In addition, RNAs other than mRNA, e.g., tRNAs, and viral RNAs, can also be targeted.
As used herein, the phrase “mediates RNAi” refers to the ability to silence, in a sequence specific manner, a target RNA. While not wishing to be bound by theory, it is believed that silencing uses the RNAi machinery or process and a guide RNA, e.g., an sRNA agent of 21 to 23 nucleotides.
As used herein, “specifically hybridizable” and “complementary” are terms which are used to indicate a sufficient degree of complementarity such that stable and specific binding occurs between a compound of the invention and a target RNA molecule. Specific binding requires a sufficient degree of complementarity to avoid non-specific binding of the oligomeric compound to non-target sequences under conditions in which specific binding is desired, i.e., under physiological conditions in the case of in vivo assays or therapeutic treatment, or in the case of in vitro assays, under conditions in which the assays are performed. The non-target sequences typically differ by at least 5 nucleotides.
In one embodiment, an iRNA agent is “sufficiently complementary” to a target RNA, e.g., a target mRNA, such that the iRNA agent silences production of protein encoded by the target mRNA. In another embodiment, the iRNA agent is “exactly complementary” (excluding the RRMS containing subunit(s)) to a target RNA, e.g., the target RNA and the iRNA agent anneal, preferably to form a hybrid made exclusively of Watson-Crick basepairs in the region of exact complementarity. A “sufficiently complementary” target RNA can include an internal region (e.g., of at least 10 nucleotides) that is exactly complementary to a target RNA. Moreover, in some embodiments, the iRNA agent specifically discriminates a single-nucleotide difference. In this case, the iRNA agent only mediates RNAi if exact complementary is found in the region (e.g., within 7 nucleotides of) the single-nucleotide difference.
As used herein, the term “oligonucleotide” refers to a nucleic acid molecule (RNA or DNA) preferably of length less than 100, 200, 300, or 400 nucleotides.
RNA agents discussed herein include otherwise unmodified RNA as well as RNA which have been modified, e.g., to improve efficacy, and polymers of nucleoside surrogates. Unmodified RNA refers to a molecule in which the components of the nucleic acid, namely sugars, bases, and phosphate moieties, are the same or essentially the same as that which occur in nature, preferably as occur naturally in the human body. The art has referred to rare or unusual, but naturally occurring, RNAs as modified RNAs, see, e.g., Limbach et al., (1994) Summary: the modified nucleosides of RNA, Nucleic Acids Res. 22: 2183-2196. Such rare or unusual RNAs, often termed modified RNAs (apparently because the are typically the result of a post transcriptionally modification) are within the term unmodified RNA, as used herein. Modified RNA as used herein refers to a molecule in which one or more of the components of the nucleic acid, namely sugars, bases, and phosphate moieties, are different from that which occur in nature, preferably different from that which occurs in the human body. While they are referred to as modified “RNAs,” they will of course, because of the modification, include molecules which are not RNAs. Nucleoside surrogates are molecules in which the ribophosphate backbone is replaced with a non-ribophosphate construct that allows the bases to the presented in the correct spatial relationship such that hybridization is substantially similar to what is seen with a ribophosphate backbone, e.g., non-charged mimics of the ribophosphate backbone. Examples of all of the above are discussed herein.
Much of the discussion below refers to single strand molecules. In many embodiments of the invention a double stranded iRNA agent, e.g., a partially double stranded iRNA agent, is required or preferred. Thus, it is understood that that double stranded structures (e.g. where two separate molecules are contacted to form the double stranded region or where the double stranded region is formed by intramolecular pairing (e.g., a hairpin structure)) made of the single stranded structures described below are within the invention. Preferred lengths are described elsewhere herein.
As nucleic acids are polymers of subunits or monomers, many of the modifications described below occur at a position which is repeated within a nucleic acid, e.g., a modification of a base, or a phosphate moiety, or the a non-linking O of a phosphate moiety. In some cases the modification will occur at all of the subject positions in the nucleic acid but in many, and in fact in most cases it will not. By way of example, a modification may only occur at a 3′ or 5′ terminal position, may only occur in a terminal regions, e.g. at a position on a terminal nucleotide or in the last 2, 3, 4, 5, or 10 nucleotides of a strand. A modification may occur in a double strand region, a single strand region, or in both. A modification may occur only in the double strand region of an RNA or may only occur in a single strand region of an RNA. E.g., a phosphorothioate modification at a non-linking O position may only occur at one or both termini, may only occur in a terminal regions, e.g., at a position on a terminal nucleotide or in the last 2, 3, 4, 5, or 10 nucleotides of a strand, or may occur in double strand and single strand regions, particularly at termini. The 5′ end or ends can be phosphorylated.
In some embodiments it is particularly preferred, e.g., to enhance stability, to include particular bases in overhangs, or to include modified nucleotides or nucleotide surrogates, in single strand overhangs, e.g., in a 5′ or 3′ overhang, or in both. E.g., it can be desirable to include purine nucleotides in overhangs. In some embodiments all or some of the bases in a 3′ or 5′ overhang will be modified, e.g., with a modification described herein. Modifications can include, e.g., the use of modifications at the 2′ OH group of the ribose sugar, e.g., the use of deoxyribonucleotides, e.g., deoxythymidine, instead of ribonucleotides, and modifications in the phosphate group, e.g., phosphothioate modifications. Overhangs need not be homologous with the target sequence.
Modifications and nucleotide surrogates are discussed below.




The scaffold presented above in Formula 1 represents a portion of a ribonucleic acid. The basic components are the ribose sugar, the base, the terminal phosphates, and phosphate internucleotide linkers. Where the bases are naturally occurring bases, e.g., adenine, uracil, guanine or cytosine, the sugars are the unmodified 2′ hydroxyl ribose sugar (as depicted) and W, X, Y, and Z are all O, Formula 1 represents a naturally occurring unmodified oligoribonucleotide.
Unmodified oligoribonucleotides may be less than optimal in some applications, e.g., unmodified oligoribonucleotides can be prone to degradation by e.g., cellular nucleases. Nucleases can hydrolyze nucleic acid phosphodiester bonds. However, chemical modifications to one or more of the above RNA components can confer improved properties, and, e.g., can render oligoribonucleotides more stable to nucleases. Unmodified oligoribonucleotides may also be less than optimal in terms of offering tethering points for attaching ligands or other moieties to an iRNA agent.
Modified nucleic acids and nucleotide surrogates can include one or more of:
(i) alteration, e.g., replacement, of one or both of the non-linking (X and Y) phosphate oxygens and/or of one or more of the linking (W and Z) phosphate oxygens (When the phosphate is in the terminal position, one of the positions W or Z will not link the phosphate to an additional element in a naturally occurring ribonucleic acid. However, for simplicity of terminology, except where otherwise noted, the W position at the 5′ end of a nucleic acid and the terminal Z position at the 3′ end of a nucleic acid, are within the term “linking phosphate oxygens” as used herein.);
(ii) alteration, e.g., replacement, of a constituent of the ribose sugar, e.g., of the 2′ hydroxyl on the ribose sugar, or wholesale replacement of the ribose sugar with a structure other than ribose, e.g., as described herein;
(iii) wholesale replacement of the phosphate moiety (bracket I) with “dephospho” linkers;
(iv) modification or replacement of a naturally occurring base;
(v) replacement or modification of the ribose-phosphate backbone (bracket II);
(vi) modification of the 3′ end or 5′ end of the RNA, e.g., removal, modification or replacement of a terminal phosphate group or conjugation of a moiety, e.g. a fluorescently labeled moiety, to either the 3′ or 5′ end of RNA.
The terms replacement, modification, alteration, and the like, as used in this context, do not imply any process limitation, e.g., modification does not mean that one must start with a reference or naturally occurring ribonucleic acid and modify it to produce a modified ribonucleic acid bur rather modified simply indicates a difference from a naturally occurring molecule.
It is understood that the actual electronic structure of some chemical entities cannot be adequately represented by only one canonical form (i.e. Lewis structure). While not wishing to be bound by theory, the actual structure can instead be some hybrid or weighted average of two or more canonical forms, known collectively as resonance forms or structures. Resonance structures are not discrete chemical entities and exist only on paper. They differ from one another only in the placement or “localization” of the bonding and nonbonding electrons for a particular chemical entity. It can be possible for one resonance structure to contribute to a greater extent to the hybrid than the others. Thus, the written and graphical descriptions of the embodiments of the present invention are made in terms of what the art recognizes as the predominant resonance form for a particular species. For example, any phosphoroamidate (replacement of a nonlinking oxygen with nitrogen) would be represented by X═O and Y═N in the above figure.
Specific modifications are discussed in more detail below.
The Phosphate Group
The phosphate group is a negatively charged species. The charge is distributed equally over the two non-linking oxygen atoms (i.e., X and Y in Formula 1 above). However, the phosphate group can be modified by replacing one of the oxygens with a different substituent. One result of this modification to RNA phosphate backbones can be increased resistance of the oligoribonucleotide to nucleolytic breakdown. Thus while not wishing to be bound by theory, it can be desirable in some embodiments to introduce alterations which result in either an uncharged linker or a charged linker with unsymmetrical charge distribution.
Examples of modified phosphate groups include phosphorothioate, phosphoroselenates, borano phosphates, borano phosphate esters, hydrogen phosphonates, phosphoroamidates, alkyl or aryl phosphonates and phosphotriesters. Phosphorodithioates have both non-linking oxygens replaced by sulfur. Unlike the situation where only one of X or Y is altered, the phosphorus center in the phosphorodithioates is achiral which precludes the formation of oligoribonucleotides diastereomers. Diastereomer formation can result in a preparation in which the individual diastereomers exhibit varying resistance to nucleases. Further, the hybridization affinity of RNA containing chiral phosphate groups can be lower relative to the corresponding unmodified RNA species. Thus, while not wishing to be bound by theory, modifications to both X and Y which eliminate the chiral center, e.g. phosphorodithioate formation, may be desirable in that they cannot produce diastereomer mixtures. Thus, X can be any one of S, Se, B, C, H, N, or OR (R is alkyl or aryl). Thus Y can be any one of S, Se, B, C, H, N, or OR (R is alkyl or aryl). Replacement of X and/or Y with sulfur is preferred.
The phosphate linker can also be modified by replacement of a linking oxygen (i.e., W or Z in Formula 1) with nitrogen (bridged phosphoroamidates), sulfur (bridged phosphorothioates) and carbon (bridged methylenephosphonates). The replacement can occur at a terminal oxygen (position W (3′) or position Z (5′). Replacement of W with carbon or Z with nitrogen is preferred.
Candidate agents can be evaluated for suitability as described below.
The Sugar Group
A modified RNA can include modification of all or some of the sugar groups of the ribonucleic acid. E.g., the 2′ hydroxyl group (OH) can be modified or replaced with a number of different “oxy” or “deoxy” substituents. While not being bound by theory, enhanced stability is expected since the hydroxyl can no longer be deprotonated to form a 2′ alkoxide ion. The 2′ alkoxide can catalyze degradation by intramolecular nucleophilic attack on the linker phosphorus atom. Again, while not wishing to be bound by theory, it can be desirable to some embodiments to introduce alterations in which alkoxide formation at the 2′ position is not possible.
Examples of “oxy”-2′ hydroxyl group modifications include alkoxy or aryloxy (OR, e.g., R═H, alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar); polyethyleneglycols (PEG), O(CH2CH2O)nCH2CH2OR; “locked” nucleic acids (LNA) in which the 2′ hydroxyl is connected, e.g., by a methylene bridge, to the 4′ carbon of the same ribose sugar; O-AMINE (AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino, ethylene diamine, polyamino) and aminoalkoxy, O(CH2)nAMINE, (e.g., AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino, ethylene diamine, polyamino). It is noteworthy that oligonucleotides containing only the methoxyethyl group (MOE), (OCH2CH2OCH3, a PEG derivative), exhibit nuclease stabilities comparable to those modified with the robust phosphorothioate modification.
“Deoxy” modifications include hydrogen (i.e. deoxyribose sugars, which are of particular relevance to the overhang portions of partially ds RNA); halo (e.g., fluoro); amino (e.g. NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, or amino acid); NH(CH2CH2NH)nCH2CH2-AMINE (AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino), —NHC(O)R(R=alkyl, cycloalkyl, aryl, aralkyl, heteroaryl or sugar), cyano; mercapto; alkyl-thio-alkyl; thioalkoxy; and alkyl, cycloalkyl, aryl, alkenyl and alkynyl, which may be optionally substituted with e.g., an amino functionality. Preferred substitutents are 2′-methoxyethyl, 2′-OCH3, 2′-O-allyl, 2′-C-allyl, and 2′-fluoro.
The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified RNA can include nucleotides containing e.g., arabinose, as the sugar.
Modified RNA's can also include “abasic” sugars, which lack a nucleobase at C-1′. These abasic sugars can also be further contain modifications at one or more of the constituent sugar atoms.
To maximize nuclease resistance, the 2′ modifications can be used in combination with one or more phosphate linker modifications (e.g., phosphorothioate). The so-called “chimeric” oligonucleotides are those that contain two or more different modifications.
The modification can also entail the wholesale replacement of a ribose structure with another entity at one or more sites in the iRNA agent. These modifications are described in section entitled Ribose Replacements for RRMSs.
Candidate modifications can be evaluated as described below.
Replacement of the Phosphate Group
The phosphate group can be replaced by non-phosphorus containing connectors (cf. Bracket I in Formula 1 above). While not wishing to be bound by theory, it is believed that since the charged phosphodiester group is the reaction center in nucleolytic degradation, its replacement with neutral structural mimics should impart enhanced nuclease stability. Again, while not wishing to be bound by theory, it can be desirable, in some embodiment, to introduce alterations in which the charged phosphate group is replaced by a neutral moiety.
Examples of moieties which can replace the phosphate group include siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo, methylenedimethylhydrazo and methyleneoxymethylimino. Preferred replacements include the methylenecarbonylamino and methylenemethylimino groups.
Candidate modifications can be evaluated as described below.
Replacement of Ribophosphate Backbone
Oligonucleotide-mimicking scaffolds can also be constructed wherein the phosphate linker and ribose sugar are replaced by nuclease resistant nucleoside or nucleotide surrogates (see Bracket II of Formula 1 above). While not wishing to be bound by theory, it is believed that the absence of a repetitively charged backbone diminishes binding to proteins that recognize polyanions (e.g. nucleases). Again, while not wishing to be bound by theory, it can be desirable in some embodiment, to introduce alterations in which the bases are tethered by a neutral surrogate backbone.
Examples include the mophilino, cyclobutyl, pyrrolidine and peptide nucleic acid (PNA) nucleoside surrogates. A preferred surrogate is a PNA surrogate.
Candidate modifications can be evaluated as described below.
Terminal Modifications
The 3′ and 5′ ends of an oligonucleotide can be modified. Such modifications can be at the 3′ end, 5′ end or both ends of the molecule. They can include modification or replacement of an entire terminal phosphate or of one or more of the atoms of the phosphate group. E.g., the 3′ and 5′ ends of an oligonucleotide can be conjugated to other functional molecular entities such as labeling moieties, e.g., fluorophores (e.g., pyrene, TAMRA, fluorescein, Cy3 or Cy5 dyes) or protecting groups (based e.g., on sulfur, silicon, boron or ester). The functional molecular entities can be attached to the sugar through a phosphate group and/or a spacer. The terminal atom of the spacer can connect to or replace the linking atom of the phosphate group or the C-3′ or C-5′ O, N, S or C group of the sugar. Alternatively, the spacer can connect to or replace the terminal atom of a nucleotide surrogate (e.g., PNAs). These spacers or linkers can include e.g., —(CH2)n—, —(CH2)nN—, —(CH2)nO—, —(CH2)nS—, O(CH2CH2O)nCH2CH2OH (e.g., n=3 or 6), abasic sugars, amide, carboxy, amine, oxyamine, oxyimine, thioether, disulfide, thiourea, sulfonamide, or morpholino, or biotin and fluorescein reagents. When a spacer/phosphate-functional molecular entity-spacer/phosphate array is interposed between two strands of iRNA agents, this array can substitute for a hairpin RNA loop in a hairpin-type RNA agent. The 3′ end can be an —OH group. While not wishing to be bound by theory, it is believed that conjugation of certain moieties can improve transport, hybridization, and specificity properties. Again, while not wishing to be bound by theory, it may be desirable to introduce terminal alterations that improve nuclease resistance. Other examples of terminal modifications include dyes, intercalating agents (e.g. acridines), cross-linkers (e.g. psoralene, mitomycin C), porphyrins (TPPC4, texaphyrin, Sapphyrin), polycyclic aromatic hydrocarbons (e.g., phenazine, dihydrophenazine), artificial endonucleases (e.g. EDTA), lipophilic carriers (e.g., cholesterol, cholic acid, adamantane acetic acid, 1-pyrene butyric acid, dihydrotestosterone, 1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol, borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid, myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid, dimethoxytrityl, or phenoxazine) and peptide conjugates (e.g., antennapedia peptide, Tat peptide), alkylating agents, phosphate, amino, mercapto, PEG (e.g., PEG-40K), MPEG, [MPEG]2, polyamino, alkyl, substituted alkyl, radiolabeled markers, enzymes, haptens (e.g. biotin), transport/absorption facilitators (e.g., aspirin, vitamin E, folic acid), synthetic ribonucleases (e.g., imidazole, bisimidazole, histamine, imidazole clusters, acridine-imidazole conjugates, Eu3+ complexes of tetraazamacrocycles).
Terminal modifications can be added for a number of reasons, including as discussed elsewhere herein to modulate activity or to modulate resistance to degradation. Terminal modifications useful for modulating activity include modification of the 5′ end with phosphate or phosphate analogs. E.g., in preferred embodiments iRNA agents, especially antisense strands, are 5′ phosphorylated or include a phosphoryl analog at the 5′ prime terminus. 5′-phosphate modifications include those which are compatible with RISC mediated gene silencing. Suitable modifications include: 5′-monophosphate ((HO)2(O)P—O-5); 5′-diphosphate ((HO)2(O)P—O—P(HO)(O)—O-5′); 5′-triphosphate ((HO)2(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′); 5′-guanosine cap (7-methylated or non-methylated) (7m-G-O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′); 5′-adenosine cap (Appp), and any modified or unmodified nucleotide cap structure (N—O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′); 5′-monothiophosphate (phosphorothioate; (HO)2(S)P—O-5′); 5′-monodithiophosphate (phosphorodithioate; (HO)(HS)(S)P—O-5′), 5′-phosphorothiolate ((HO)2(O)P—S-5′); any additional combination of oxygen/sulfur replaced monophosphate, diphosphate and triphosphates (e.g. 5′-alpha-thiotriphosphate, 5′-gamma-thiotriphosphate, etc.), 5′-phosphoramidates ((HO)2(O)P—NH-5′, (HO)(NH2)(O)P—O-5′), 5′-alkylphosphonates (R=alkyl=methyl, ethyl, isopropyl, propyl, etc., e.g. RP(OH)(O)—O-5′-, (OH)2(O)P-5′-CH2-), 5′-alkyletherphosphonates (R=alkylether=methoxymethyl (MeOCH2-), ethoxymethyl, etc., e.g. RP(OH)(O)—O-5′-).
Terminal modifications useful for increasing resistance to degradation include
Terminal modifications can also be useful for monitoring distribution, and in such cases the preferred groups to be added include fluorophores, e.g., fluorscein or an Alexa dye, e.g., Alexa 488. Terminal modifications can also be useful for enhancing uptake, useful modifications for this include cholesterol. Terminal modifications can also be useful for cross-linking an RNA agent to another moiety; modifications useful for this include mitomycin C.
Candidate modifications can be evaluated as described below.
The Bases
Adenine, guanine, cytosine and uracil are the most common bases found in RNA. These bases can be modified or replaced to provide RNA's having improved properties. E.g., nuclease resistant oligoribonucleotides can be prepared with these bases or with synthetic and natural nucleobases (e.g., inosine, thymine, xanthine, hypoxanthine, nubularine, isoguanisine, or tubercidine) and any one of the above modifications. Alternatively, substituted or modified analogs of any of the above bases, e.g., “unusual bases” and “universal bases,” can be employed. Examples include without limitation 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 5-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 5-halouracil, 5-(2-aminopropyl)uracil, 5-amino allyl uracil, 8-halo, amino, thiol, thioalkyl, hydroxyl and other 8-substituted adenines and guanines, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine, 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine, dihydrouracil, 3-deaza-5-azacytosine, 2-aminopurine, 5-alkyluracil, 7-alkylguanine, 5-alkyl cytosine, 7-deazaadenine, N6, N6-dimethyladenine, 2,6-diaminopurine, 5-amino-allyl-uracil, N3-methyluracil, substituted 1,2,4-triazoles, 2-pyridinone, 5-nitroindole, 3-nitropyrrole, 5-methoxyuracil, uracil-5-oxyacetic acid, 5-methoxycarbonylmethyluracil, 5-methyl-2-thiouracil, 5-methoxycarbonylmethyl-2-thiouracil, 5-methylaminomethyl-2-thiouracil, 3-(3-amino-3-carboxypropyl)uracil, 3-methylcytosine, 5-methylcytosine, N4-acetyl cytosine, 2-thiocytosine, N6-methyladenine, N6-isopentyladenine, 2-methylthio-N6-isopentenyladenine, N-methylguanines, or O-alkylated bases. Further purines and pyrimidines include those disclosed in U.S. Pat. No. 3,687,808, those disclosed in the Concise Encyclopedia Of Polymer Science And Engineering, pages 858-859, Kroschwitz, J. I., ed. John Wiley & Sons, 1990, and those disclosed by Englisch et al., Angewandte Chemie, International Edition, 1991, 30, 613.
Generally, base changes are less preferred for promoting stability, but they can be useful for other reasons, e.g., some, e.g., 2,6-diaminopurine and 2 amino purine, are fluorescent. Modified bases can reduce target specificity. This should be taken into consideration in the design of iRNA agents.
Candidate modifications can be evaluated as described below.
Evaluation of Candidate RNA's
One can evaluate a candidate RNA agent, e.g., a modified RNA, for a selected property by exposing the agent or modified molecule and a control molecule to the appropriate conditions and evaluating for the presence of the selected property. For example, resistance to a degradent can be evaluated as follows. A candidate modified RNA (and preferably a control molecule, usually the unmodified form) can be exposed to degradative conditions, e.g., exposed to a milieu, which includes a degradative agent, e.g., a nuclease. E.g., one can use a biological sample, e.g., one that is similar to a milieu, which might be encountered, in therapeutic use, e.g., blood or a cellular fraction, e.g., a cell-free homogenate or disrupted cells. The candidate and control could then be evaluated for resistance to degradation by any of a number of approaches. For example, the candidate and control could be labeled, preferably prior to exposure, with, e.g., a radioactive or enzymatic label, or a fluorescent label, such as Cy3 or Cy5. Control and modified RNA's can be incubated with the degradative agent, and optionally a control, e.g., an inactivated, e.g., heat inactivated, degradative agent. A physical parameter, e.g., size, of the modified and control molecules are then determined. They can be determined by a physical method, e.g., by polyacrylamide gel electrophoresis or a sizing column, to assess whether the molecule has maintained its original length, or assessed functionally. Alternatively, Northern blot analysis can be used to assay the length of an unlabeled modified molecule.
A functional assay can also be used to evaluate the candidate agent. A functional assay can be applied initially or after an earlier non-functional assay, (e.g., assay for resistance to degradation) to determine if the modification alters the ability of the molecule to silence gene expression. For example, a cell, e.g., a mammalian cell, such as a mouse or human cell, can be co-transfected with a plasmid expressing a fluorescent protein, e.g., GFP, and a candidate RNA agent homologous to the transcript encoding the fluorescent protein (see, e.g., WO 00/44914). For example, a modified dsRNA homologous to the GFP mRNA can be assayed for the ability to inhibit GFP expression by monitoring for a decrease in cell fluorescence, as compared to a control cell, in which the transfection did not include the candidate dsRNA, e.g., controls with no agent added and/or controls with a non-modified RNA added. Efficacy of the candidate agent on gene expression can be assessed by comparing cell fluorescence in the presence of the modified and unmodified dsRNA agents.
In an alternative functional assay, a candidate dsRNA agent homologous to an endogenous mouse gene, preferably a maternally expressed gene, such as c-mos, can be injected into an immature mouse oocyte to assess the ability of the agent to inhibit gene expression in vivo (see, e.g., WO 01/36646). A phenotype of the oocyte, e.g., the ability to maintain arrest in metaphase II, can be monitored as an indicator that the agent is inhibiting expression. For example, cleavage of c-mos mRNA by a dsRNA agent would cause the oocyte to exit metaphase arrest and initiate parthenogenetic development (Colledge et al. Nature 370: 65-68, 1994; Hashimoto et al. Nature, 370:68-71, 1994). The effect of the modified agent on target RNA levels can be verified by Northern blot to assay for a decrease in the level of target mRNA, or by Western blot to assay for a decrease in the level of target protein, as compared to a negative control. Controls can include cells in which with no agent is added and/or cells in which a non-modified RNA is added.
References
General References
The oligoribonucleotides and oligoribonucleosides used in accordance with this invention may be with solid phase synthesis, see for example “Oligonucleotide synthesis, a practical approach”, Ed. M. J. Gait, IRL Press, 1984; “Oligonucleotides and Analogues, A Practical Approach”, Ed. F. Eckstein, IRL Press, 1991 (especially Chapter 1, Modern machine-aided methods of oligodeoxyribonucleotide synthesis, Chapter 2, Oligoribonucleotide synthesis, Chapter 3,2′-O-Methyloligoribonucleotide-s: synthesis and applications, Chapter 4, Phosphorothioate oligonucleotides, Chapter 5, Synthesis of oligonucleotide phosphorodithioates, Chapter 6, Synthesis of oligo-2′-deoxyribonucleoside methylphosphonates, and. Chapter 7, Oligodeoxynucleotides containing modified bases. Other particularly useful synthetic procedures, reagents, blocking groups and reaction conditions are described in Martin, P., Helv. Chian. Acta, 1995, 78, 486-504; Beaucage, S. L. and Iyer, R. P., Tetrahedron, 1992, 48, 2223-2311 and Beaucage, S. L. and Iyer, R. P., Tetrahedron, 1993, 49, 6123-6194, or references referred to therein.
Modification described in WO 00/44895, WO01/75164, or WO02/44321 can be used herein.
The disclosure of all publications, patents, and published patent applications listed herein are hereby incorporated by reference.
Phosphate Group References
The preparation of phosphinate oligoribonucleotides is described in U.S. Pat. No. 5,508,270. The preparation of alkyl phosphonate oligoribonucleotides is described in U.S. Pat. No. 4,469,863. The preparation of phosphoramidite oligoribonucleotides is described in U.S. Pat. Nos. 5,256,775 or 5,366,878. The preparation of phosphotriester oligoribonucleotides is described in U.S. Pat. No. 5,023,243. The preparation of borano phosphate oligoribonucleotide is described in U.S. Pat. Nos. 5,130,302 and 5,177,198. The preparation of 3′-Deoxy-3′-amino phosphoramidate oligoribonucleotides is described in U.S. Pat. No. 5,476,925. 3′-Deoxy-3′-methylenephosphonate oligoribonucleotides is described in An, H, et al. J. Org. Chem. 2001, 66, 2789-2801. Preparation of sulfur bridged nucleotides is described in Sproat et al. Nucleosides Nucleotides 1988, 7,651 and Crosstick et al. Tetrahedron Lett. 1989, 30, 4693.
Sugar Group References
Modifications to the 2′ modifications can be found in Verma, S. et al. Annu. Rev. Biochem. 1998, 67, 99-134 and all references therein. Specific modifications to the ribose can be found in the following references: 2′-fluoro (Kawasaki et. al., J. Med. Chem., 1993, 36, 831-841), 2′-MOE (Martin, P. Helv. Chim. Acta 1996, 79, 1930-1938), “LNA” (Wengel, J. Acc. Chem. Res. 1999, 32, 301-310).
Replacement of the Phosphate Group References
Methylenemethylimino linked oligoribonucleosides, also identified herein as MMI linked oligoribonucleosides, methylenedimethylhydrazo linked oligoribonucleosides, also identified herein as MDH linked oligoribonucleosides, and methylenecarbonylamino linked oligonucleosides, also identified herein as amide-3 linked oligoribonucleosides, and methyleneaminocarbonyl linked oligonucleosides, also identified herein as amide-4 linked oligoribonucleosides as well as mixed backbone compounds having, as for instance, alternating MMI and PO or PS linkages can be prepared as is described in U.S. Pat. Nos. 5,378,825, 5,386,023, 5,489,677 and in published PCT applications PCT/US92/04294 and PCT/US92/04305 (published as WO 92/20822 WO and 92/20823, respectively). Formacetal and thioformacetal linked oligoribonucleosides can be prepared as is described in U.S. Pat. Nos. 5,264,562 and 5,264,564. Ethylene oxide linked oligoribonucleosides can be prepared as is described in U.S. Pat. No. 5,223,618. Siloxane replacements are described in Cormier, J. F. et al. Nucleic Acids Res. 1988, 16, 4583. Carbonate replacements are described in Tittensor, J. R. J. Chem. Soc. C 1971, 1933. Carboxymethyl replacements are described in Edge, M. D. et al. J. Chem. Soc. Perkin Trans. 11972, 1991. Carbamate replacements are described in Stirchak, E. P. Nucleic Acids Res. 1989, 17, 6129.
Replacement of the Phosphate-Ribose Backbone References
Cyclobutyl sugar surrogate compounds can be prepared as is described in U.S. Pat. No. 5,359,044. Pyrrolidine sugar surrogate can be prepared as is described in U.S. Pat. No. 5,519,134. Morpholino sugar surrogates can be prepared as is described in U.S. Pat. Nos. 5,142,047 and 5,235,033, and other related patent disclosures. Peptide Nucleic Acids (PNAs) are known per se and can be prepared in accordance with any of the various procedures referred to in Peptide Nucleic Acids (PNA): Synthesis, Properties and Potential Applications, Bioorganic & Medicinal Chemistry, 1996, 4, 5-23. They may also be prepared in accordance with U.S. Pat. No. 5,539,083.
Terminal Modification References
Terminal modifications are described in Manoharan, M. et al. Antisense and Nucleic Acid Drug Development 12, 103-128 (2002) and references therein.
Bases References
N-2 substitued purine nucleoside amidites can be prepared as is described in U.S. Pat. No. 5,459,255. 3-Deaza purine nucleoside amidites can be prepared as is described in U.S. Pat. No. 5,457,191. 5,6-Substituted pyrimidine nucleoside amidites can be prepared as is described in U.S. Pat. No. 5,614,617. 5-Propynyl pyrimidine nucleoside amidites can be prepared as is described in U.S. Pat. No. 5,484,908. Additional references can be disclosed in the above section on base modifications.
Preferred iRNA Agents
Preferred RNA agents have the following structure (see Formula 2 below):




Referring to Formula 2 above, R1, R2, and R3 are each, independently, H, (i.e. abasic nucleotides), adenine, guanine, cytosine and uracil, inosine, thymine, xanthine, hypoxanthine, nubularine, tubercidine, isoguanisine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 5-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 5-halouracil, 5-(2-aminopropyl)uracil, 5-amino allyl uracil, 8-halo, amino, thiol, thioalkyl, hydroxyl and other 8-substituted adenines and guanines, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine, 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine, dihydrouracil, 3-deaza-5-azacytosine, 2-aminopurine, 5-alkyluracil, 7-alkylguanine, 5-alkyl cytosine, 7-deazaadenine, 7-deazaguanine, N6, N6-dimethyladenine, 2,6-diaminopurine, 5-amino-allyl-uracil, N3-methyluracil, substituted 1,2,4-triazoles, 2-pyridinone, 5-nitroindole, 3-nitropyrrole, 5-methoxyuracil, uracil-5-oxyacetic acid, 5-methoxycarbonylmethyluracil, 5-methyl-2-thiouracil, 5-methoxycarbonylmethyl-2-thiouracil, 5-methylaminomethyl-2-thiouracil, 3-(3-amino-3-carboxypropyl)uracil, 3-methylcytosine, 5-methylcytosine, N4-acetyl cytosine, 2-thiocytosine, N6-methyladenine, N6-isopentyladenine, 2-methylthio-N6-isopentenyladenine, N-methylguanines, or O-alkylated bases.
R4, R5, and R6 are each, independently, OR8, O(CH2CH2O)mCH2CH2OR8; O(CH2)nR9; O(CH2)nOR9, H; halo; NH2; NHR8; N(R8)2; NH(CH2CH2NH)mCH2CH2NHR9; NHC(O)R8; cyano; mercapto, SR8; alkyl-thio-alkyl; alkyl, aralkyl, cycloalkyl, aryl, heteroaryl, alkenyl, alkynyl, each of which may be optionally substituted with halo, hydroxy, oxo, nitro, haloalkyl, alkyl, alkaryl, aryl, aralkyl, alkoxy, aryloxy, amino, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, acylamino, alkylcarbamoyl, arylcarbamoyl, aminoalkyl, alkoxycarbonyl, carboxy, hydroxyalkyl, alkanesulfonyl, alkanesulfonamido, arenesulfonamido, aralkylsulfonamido, alkylcarbonyl, acyloxy, cyano, or ureido; or R4, R5, or R6 together combine with R7 to form an [—O—CH2—] covalently bound bridge between the sugar 2′ and 4′ carbons.
A1 is:




H; OH; OCH3; W1; an abasic nucleotide; or absent;
(a preferred Al, especially with regard to anti-sense strands, is chosen from 5′-monophosphate ((HO)2(O)P—O-5′), 5′-diphosphate ((HO)2(O)P—O—P(HO)(O)—O-5′), 5′-triphosphate ((HO)2(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′), 5′-guanosine cap (7-methylated or non-methylated) (7m-G-O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′), 5′-adenosine cap (Appp), and any modified or unmodified nucleotide cap structure (N—O-5′-(HO)(O)P—O—(HO)(O)P—O—P(HO)(O)—O-5′), 5′-monothiophosphate (phosphorothioate; (HO)2(S)P—O-5′), 5′-monodithiophosphate (phosphorodithioate; (HO)(HS)(S)P—O-5′), 5′-phosphorothiolate ((HO)2(O)P—S-5′); any additional combination of oxygen/sulfur replaced monophosphate, diphosphate and triphosphates (e.g. 5′-alpha-thiotriphosphate, 5′-gamma-thiotriphosphate, etc.), 5′-phosphoramidates ((HO)2(O)P—NH-5′, (HO)(NH2)(O)P—O-5′), 5′-alkylphosphonates (R=alkyl=methyl, ethyl, isopropyl, propyl, etc., e.g. RP(OH)(O)—O-5′-, (OH)2(O)P-5′-CH2—), 5′-alkyletherphosphonates (R=alkylether=methoxymethyl (MeOCH2—), ethoxymethyl, etc., e.g. RP(OH)(O)—O-5′-)).
A2 is:




A3 is:




and

A4 is:




H; Z4; an inverted nucleotide; an abasic nucleotide; or absent.
W1 is OH, (CH2)nR10, (CH2)nNHR10, (CH2)nOR10, (CH2)nSR10; O(CH2)nR10; O(CH2)nOR10, O(CH2)nNR10, O(CH2)nSR10; O(CH2)nSS(CH2)nOR10, O(CH2)nC(O)OR10, NH(CH2)nR10; NH(CH2)nNR10; NH(CH2)nOR10, NH(CH2)nSR10; S(CH2)nR10, S(CH2)nNR10, S(CH2)nOR10, S(CH2)nSR10O(CH2CH2O)mCH2CH2OR10; O(CH2CH2O)mCH2CH2NHR10, NH(CH2CH2NH)mCH2CH2NHR10; Q-R10, O-Q-R10 N-Q-R10, S-Q-R10 or —O—. W4 is O, CH2, NH, or S.
X1, X2, X3, and X4 are each, independently, O or S.
Y1, Y2, Y3, and Y4 are each, independently, OH, O−, OR8, S, Se, BH3−, H, NHR9, N(R9)2 alkyl, cycloalkyl, aralkyl, aryl, or heteroaryl, each of which may be optionally substituted.
Z1, Z2, and Z3 are each independently O, CH2, NH, or S. Z4 is OH, (CH2)nR10, (CH2)nNHR10, (CH2)nOR10, (CH2)nSR10; O(CH2)nR10; O(CH2)nOR10, O(CH2)nNR10, O(CH2)nSR10, O(CH2)nSS(CH2)nOR10, O(CH2)nC(O)OR10; NH(CH2)nR10; NH(CH2)nNR10; NH(CH2)nOR10, NH(CH2)nSR10; S(CH2)nR10, S(CH2)nNR10, S(CH2)nOR10, S(CH2)nSR10 O(CH2CH2O)mCH2CH2OR10, O(CH2CH2O)mCH2CH2NHR10, NH(CH2CH2NH)mCH2CH2NHR10; Q-R10, O-Q-R10 N-Q-R10; S-Q-R10.
x is 5-100, chosen to comply with a length for an RNA agent described herein.
R7 is H; or is together combined with R4, R5, or R6 to form an [—O—CH2—] covalently bound bridge between the sugar 2′ and 4′ carbons.
R8 is alkyl, cycloalkyl, aryl, aralkyl, heterocyclyl, heteroaryl, amino acid, or sugar; R9 is NH2, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, or amino acid; and R10 is H; fluorophore (pyrene, TAMRA, fluorescein, Cy3 or Cy5 dyes); sulfur, silicon, boron or ester protecting group; intercalating agents (e.g. acridines), cross-linkers (e.g. psoralene, mitomycin C), porphyrins (TPPC4,texaphyrin, Sapphyrin), polycyclic aromatic hydrocarbons (e.g., phenazine, dihydrophenazine), artificial endonucleases (e.g. EDTA), lipohilic carriers (cholesterol, cholic acid, adamantane acetic acid, 1-pyrene butyric acid, dihydrotestosterone, 1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol, borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid, myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid, dimethoxytrityl, or phenoxazine) and peptide conjugates (e.g., antennapedia peptide, Tat peptide), alkylating agents, phosphate, amino, mercapto, PEG (e.g., PEG-40K), MPEG, [MPEG]2, polyamino; alkyl, cycloalkyl, aryl, aralkyl, heteroaryl; radiolabelled markers, enzymes, haptens (e.g. biotin), transport/absorption facilitators (e.g., aspirin, vitamin E, folic acid), synthetic ribonucleases (e.g., imidazole, bisimidazole, histamine, imidazole clusters, acridine-imidazole conjugates, Eu3+ complexes of tetraazamacrocycles); or an RNA agent. m is 0-1,000,000, and n is 0-20. Q is a spacer selected from the group consisting of abasic sugar, amide, carboxy, oxyamine, oxyimine, thioether, disulfide, thiourea, sulfonamide, or morpholino, biotin or fluorescein reagents.
Preferred RNA agents in which the entire phosphate group has been replaced have the following structure (see Formula 3 below):




Referring to Formula 3, A10-A40 is L-G-L; A10 and/or A40 may be absent, in which L is a linker, wherein one or both L may be present or absent and is selected from the group consisting of CH2(CH2)g; N(CH2)g; O(CH2)g; S(CH2)g. G is a functional group selected from the group consisting of siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo, methylenedimethylhydrazo and methyleneoxymethylimino.
R10, R20, and R30 are each, independently, H, (i.e. abasic nucleotides), adenine, guanine, cytosine and uracil, inosine, thymine, xanthine, hypoxanthine, nubularine, tubercidine, isoguanisine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 5-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 5-halouracil, 5-(2-aminopropyl)uracil, 5-amino allyl uracil, 8-halo, amino, thiol, thioalkyl, hydroxyl and other 8-substituted adenines and guanines, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine, 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine, dihydrouracil, 3-deaza-5-azacytosine, 2-aminopurine, 5-alkyluracil, 7-alkylguanine, 5-alkyl cytosine, 7-deazaadenine, 7-deazaguanine, N6, N6-dimethyladenine, 2,6-diaminopurine, 5-amino-allyl-uracil, N3-methyluracil substituted 1,2,4-triazoles, 2-pyridinone, 5-nitroindole, 3-nitropyrrole, 5-methoxyuracil, uracil-5-oxyacetic acid, 5-methoxycarbonylmethyluracil, 5-methyl-2-thiouracil, 5-methoxycarbonylmethyl-2-thiouracil, 5-methylaminomethyl-2-thiouracil, 3-(3-amino-3carboxypropyl)uracil, 3-methylcytosine, 5-methylcytosine, N4-acetyl cytosine, 2-thiocytosine, N6-methyladenine, N6-isopentyladenine, 2-methylthio-N6-isopentenyladenine, N-methylguanines, or O-alkylated bases.
R40, R50, and R60 are each, independently, OR8, O(CH2CH2O)mCH2CH2OR8; O(CH2)nR9; O(CH2)nOR9, H; halo; NH2; NHR8; N(R8)2; NH(CH2CH2NH)mCH2CH2R9; NHC(O)R8; cyano; mercapto, SR7; alkyl-thio-alkyl; alkyl, aralkyl, cycloalkyl, aryl, heteroaryl, alkenyl, alkynyl, each of which may be optionally substituted with halo, hydroxy, oxo, nitro, haloalkyl, alkyl, alkaryl, aryl, aralkyl, alkoxy, aryloxy, amino, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, acylamino, alkylcarbamoyl, arylcarbamoyl, aminoalkyl, alkoxycarbonyl, carboxy, hydroxyalkyl, alkanesulfonyl, alkanesulfonamido, arenesulfonamido, aralkylsulfonamido, alkylcarbonyl, acyloxy, cyano, and ureido groups; or R40, R50, or R60 together combine with R70 to form an [—O—CH2—] covalently bound bridge between the sugar 2′ and 4′ carbons.
x is 5-100 or chosen to comply with a length for an RNA agent described herein.
R70 is H; or is together combined with R40, R50, or R60 to form an [—O—CH2—] covalently bound bridge between the sugar 2′ and 4′ carbons.
R8 is alkyl, cycloalkyl, aryl, aralkyl, heterocyclyl, heteroaryl, amino acid, or sugar; and R9 is NH2, alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, or amino acid. m is 0-1,000,000, n is 0-20, and g is 0-2.
Preferred nucleoside surrogates have the following structure (see Formula 4 below):

SLR100-(M-SLR200)x-M-SLR300  FORMULA 4

S is a nucleoside surrogate selected from the group consisting of mophilino, cyclobutyl, pyrrolidine and peptide nucleic acid. L is a linker and is selected from the group consisting of CH2(CH2)g; N(CH2)g; O(CH2)g; S(CH2)g; —C(O)(CH2)n— or may be absent. M is an amide bond; sulfonamide; sulfinate; phosphate group; modified phosphate group as described herein; or may be absent.
R100, R200, and R300 are each, independently, H (i.e., abasic nucleotides), adenine, guanine, cytosine and uracil, inosine, thymine, xanthine, hypoxanthine, nubularine, tubercidine, isoguanisine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 5-halouracil and cytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 5-halouracil, 5-(2-aminopropyl)uracil, 5-amino allyl uracil, 8-halo, amino, thiol, thioalkyl, hydroxyl and other 8-substituted adenines and guanines, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine, 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6 substituted purines, including 2-aminopropyladenine, 5-propynyluracil and 5-propynylcytosine, dihydrouracil, 3-deaza-5-azacytosine, 2-aminopurine, 5-alkyluracil, 7-alkylguanine, 5-alkyl cytosine, 7-deazaadenine, 7-deazaguanine, N6, N6-dimethyladenine, 2,6-diaminopurine, 5-amino-allyl-uracil, N3-methyluracil substituted 1,2,4,-triazoles, 2-pyridinones, 5-nitroindole, 3-nitropyrrole, 5-methoxyuracil, uracil-5-oxyacetic acid, 5-methoxycarbonylmethyluracil, 5-methyl-2-thiouracil, 5-methoxycarbonylmethyl-2-thiouracil, 5-methylaminomethyl-2-thiouracil, 3-(3-amino-3-carboxypropyl)uracil, 3-methylcytosine, 5-methylcytosine, N4-acetyl cytosine, 2-thiocytosine, N6-methyladenine, N6-isopentyladenine, 2-methylthio-N6-isopentenyladenine, N-methylguanines, or O-alkylated bases.
x is 5-100, or chosen to comply with a length for an RNA agent described herein; and
g is 0-2.
Nuclease Resistant Monomers
In one aspect, the invention features a nuclease resistant monomer, or a an iRNA agent which incorporates a nuclease resistant monomer (NMR), such as those described herein and those described in copending, co-owned U.S. Provisional Application Ser. No. 60/469,612, filed on May 9, 2003, which is hereby incorporated by reference.
In addition, the invention includes iRNA agents having a NMR and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an architecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates a NMR.
An iRNA agent can include monomers which have been modified so as to inhibit degradation, e.g., by nucleases, e.g., endonucleases or exonucleases, found in the body of a subject. These monomers are referred to herein as NRM's, or nuclease resistance promoting monomers or modifications. In many cases these modifications will modulate other properties of the iRNA agent as well, e.g., the ability to interact with a protein, e.g., a transport protein, e.g., serum albumin, or a member of the RISC(RNA-induced Silencing Complex), or the ability of the first and second sequences to form a duplex with one another or to form a duplex with another sequence, e.g., a target molecule.
While not wishing to be bound by theory, it is believed that modifications of the sugar, base, and/or phosphate backbone in an iRNA agent can enhance endonuclease and exonuclease resistance, and can enhance interactions with transporter proteins and one or more of the functional components of the RISC complex. Preferred modifications are those that increase exonuclease and endonuclease resistance and thus prolong the halflife of the iRNA agent prior to interaction with the RISC complex, but at the same time do not render the iRNA agent resistant to endonuclease activity in the RISC complex. Again, while not wishing to be bound by any theory, it is believed that placement of the modifications at or near the 3′ and/or 5′ end of antisense strands can result in iRNA agents that meet the preferred nuclease resistance criteria delineated above. Again, still while not wishing to be bound by any theory, it is believed that placement of the modifications at e.g., the middle of a sense strand can result in iRNA agents that are relatively less likely to undergo off-targeting.
Modifications described herein can be incorporated into any double-standed RNA and RNA-like molecule described herein, e.g., an iRNA agent. An iRNA agent may include a duplex comprising a hybridized sense and antisense strand, in which the antisense strand and/or the sense strand may include one or more of the modifications described herein. The anti sense strand may include modifications at the 3′ end and/or the 5′ end and/or at one or more positions that occur 1-6 (e.g., 1-5, 1-4, 1-3, 1-2) nucleotides from either end of the strand. The sense strand may include modifications at the 3′ end and/or the 5′ end and/or at any one of the intervening positions between the two ends of the strand. The iRNA agent may also include a duplex comprising two hybridized antisense strands. The first and/or the second antisense strand may include one or more of the modifications described herein. Thus, one and/or both antisense strands may include modifications at the 3′ end and/or the 5′ end and/or at one or more positions that occur 1-6 (e.g., 1-5, 1-4, 1-3, 1-2) nucleotides from either end of the strand. Particular configurations are discussed below.
Modifications that can be useful for producing iRNA agents that meet the preferred nuclease resistance criteria delineated above can include one or more of the following chemical and/or stereochemical modifications of the sugar, base, and/or phosphate backbone:
(i) chiral (Sp) thioates. Thus, preferred NRM's include nucleotide dimers with an enriched or pure for a particular chiral form of a modified phosphate group containing a heteroatom at the nonbridging position, e.g., Sp or Rp, at the position X, where this is the position normally occupied by the oxygen. The atom at X can also be S, Se, Nr2, or Br3. When X is S, enriched or chirally pure Sp linkage is preferred. Enriched means at least 70, 80, 90, 95, or 99% of the preferred form. Such NRM's are discussed in more detail below;
(ii) attachment of one or more cationic groups to the sugar, base, and/or the phosphorus atom of a phosphate or modified phosphate backbone moiety. Thus, preferred NRM's include monomers at the terminal position derivitized at a cationic group. As the 5′ end of an antisense sequence should have a terminal —OH or phosphate group this NRM is preferraly not used at th 5′ end of an anti-sense sequence. The group should be attached at a position on the base which minimizes intererence with H bond formation and hybridization, e.g., away form the face which intereacts with the complementary base on the other strand, e.g, at the 5′ position of a pyrimidine or a 7-position of a purine. These are discussed in more detail below;
(iii) nonphosphate linkages at the termini. Thus, preferred NRM's include Non-phosphate linkages, e.g., a linkage of 4 atoms which confers greater resistance to cleavage than does a phosphate bond. Examples include 3′ CH2-NCH3—O—CH2-5′ and 3′ CH2-NH—(O═)—CH2-5′;
(iv) 3′-bridging thiophosphates and 5′-bridging thiophosphates. Thus, preferred NRM's can included these structures;
(v) L-RNA, 2′-5′ likages, inverted linkages, a-nucleosides. Thus, other preferred NRM's include: L nucleosides and dimeric nucleotides derived from L-nucleosides; 2′-5′ phosphate, non-phosphate and modified phosphate linkages (e.g., thiophospahtes, phosphoramidates and boronophosphates); dimers having inverted linkages, e.g., 3′-3′ or 5′-5′ linkages; monomers having an alpha linkage at the 1′ site on the sugar, e.g., the structures described herein having an alpha linkage;
(vi) conjugate groups. Thus, preferred NRM's can include e.g., a targeting moiety or a conjugated ligand described herein conjugated with the monomer, e.g., through the sugar, base, or backbone;
(vi) abasic linkages. Thus, preferred NRM's can include an abasic monomer, e.g., an abasic monomer as described herein (e.g., a nucleobaseless monomer); an aromatic or heterocyclic or polyheterocyclic aromatic monomer as described herein; and
(vii) 5′-phosphonates and 5′-phosphate prodrugs. Thus, preferred NRM's include monomers, preferably at the terminal position, e.g., the 5′ position, in which one or more atoms of the phosphate group is derivatized with a protecting group, which protecting group or groups, are removed as a result of the action of a component in the subject's body, e.g, a carboxyesterase or an enzyme present in the subject's body. E.g., a phosphate prodrug in which a carboxy esterase cleaves the protected molecule resulting in the production of a thioate anion which attacks a carbon adjacent to the O of a phosphate and resulting in the production of an uprotected phosphate.
One or more different NRM modifications can be introduced into an iRNA agent or into a sequence of an iRNA agent. An NRM modification can be used more than once in a sequence or in an iRNA agent. As some NRM's interfere with hybridization the total number incorporated, should be such that acceptable levels of iRNA agent duplex formation are maintained.
In some embodiments NRM modifications are introduced into the terminal the cleavage site or in the cleavage region of a sequence (a sense strand or sequence) which does not target a desired sequence or gene in the subject. This can reduce off-target silencing.
Chiral SP Thioates
A modification can include the alteration, e.g., replacement, of one or both of the non-linking (X and Y) phosphate oxygens and/or of one or more of the linking (W and Z) phosphate oxygens. Formula X below depicts a phosphate moiety linking two sugar/sugar surrogate-base moities, SB1 and SB2.




In certain embodiments, one of the non-linking phosphate oxygens in the phosphate backbone moiety (X and Y) can be replaced by any one of the following: S, Se, BR3 (R is hydrogen, alkyl, aryl, etc.), C (i.e., an alkyl group, an aryl group, etc.), H, NR2 (R is hydrogen, alkyl, aryl, etc.), or OR (R is alkyl or aryl). The phosphorus atom in an unmodified phosphate group is achiral. However, replacement of one of the non-linking oxygens with one of the above atoms or groups of atoms renders the phosphorus atom chiral; in other words a phosphorus atom in a phosphate group modified in this way is a stereogenic center. The stereogenic phosphorus atom can possess either the “R” configuration (herein RP) or the “S” configuration (herein SP). Thus if 60% of a population of stereogenic phosphorus atoms have the RP configuration, then the remaining 40% of the population of stereogenic phosphorus atoms have the SP configuration.
In some embodiments, iRNA agents, having phosphate groups in which a phosphate non-linking oxygen has been replaced by another atom or group of atoms, may contain a population of stereogenic phosphorus atoms in which at least about 50% of these atoms (e.g., at least about 60% of these atoms, at least about 70% of these atoms, at least about 80% of these atoms, at least about 90% of these atoms, at least about 95% of these atoms, at least about 98% of these atoms, at least about 99% of these atoms) have the SP configuration. Alternatively, iRNA agents having phosphate groups in which a phosphate non-linking oxygen has been replaced by another atom or group of atoms may contain a population of stereogenic phosphorus atoms in which at least about 50% of these atoms (e.g., at least about 60% of these atoms, at least about 70% of these atoms, at least about 80% of these atoms, at least about 90% of these atoms, at least about 95% of these atoms, at least about 98% of these atoms, at least about 99% of these atoms) have the RP configuration. In other embodiments, the population of stereogenic phosphorus atoms may have the SP configuration and may be substantially free of stereogenic phosphorus atoms having the RP configuration. In still other embodiments, the population of stereogenic phosphorus atoms may have the RP configuration and may be substantially free of stereogenic phosphorus atoms having the SP configuration. As used herein, the phrase “substantially free of stereogenic phosphorus atoms having the RP configuration” means that moieties containing stereogenic phosphorus atoms having the RP configuration cannot be detected by conventional methods known in the art (chiral HPLC, 1H NMR analysis using chiral shift reagents, etc.). As used herein, the phrase “substantially free of stereogenic phosphorus atoms having the SP configuration” means that moieties containing stereogenic phosphorus atoms having the SP configuration cannot be detected by conventional methods known in the art (chiral HPLC, 1H NMR analysis using chiral shift reagents, etc.).
In a preferred embodiment, modified iRNA agents contain a phosphorothioate group, i.e., a phosphate groups in which a phosphate non-linking oxygen has been replaced by a sulfur atom. In an especially preferred embodiment, the population of phosphorothioate stereogenic phosphorus atoms may have the SP configuration and be substantially free of stereogenic phosphorus atoms having the RP configuration.
Phosphorothioates may be incorporated into iRNA agents using dimers e.g., formulas X-1 and X-2. The former can be used to introduce phosphorothioate




at the 3′ end of a strand, while the latter can be used to introduce this modification at the 5′ end or at a position that occurs e.g., 1, 2, 3, 4, 5, or 6 nucleotides from either end of the strand. In the above formulas, Y can be 2-cyanoethoxy, W and Z can be O, R2′ can be, e.g., a substituent that can impart the C-3 endo configuration to the sugar (e.g., OH, F, OCH3), DMT is dimethoxytrityl, and “BASE” can be a natural, unusual, or a universal base.

X-1 and X-2 can be prepared using chiral reagents or directing groups that can result in phosphorothioate-containing dimers having a population of stereogenic phosphorus atoms having essentially only the RP configuration (i.e., being substantially free of the SP configuration) or only the SP configuration (i.e., being substantially free of the RP configuration). Alternatively, dimers can be prepared having a population of stereogenic phosphorus atoms in which about 50% of the atoms have the RP configuration and about 50% of the atoms have the SP configuration. Dimers having stereogenic phosphorus atoms with the RP configuration can be identified and separated from dimers having stereogenic phosphorus atoms with the SP configuration using e.g., enzymatic degradation and/or conventional chromatography techniques.
Cationic Groups
Modifications can also include attachment of one or more cationic groups to the sugar, base, and/or the phosphorus atom of a phosphate or modified phosphate backbone moiety. A cationic group can be attached to any atom capable of substitution on a natural, unusual or universal base. A preferred position is one that does not interfere with hybridization, i.e., does not interfere with the hydrogen bonding interactions needed for base pairing. A cationic group can be attached e.g., through the C2′ position of a sugar or analogous position in a cyclic or acyclic sugar surrogate. Cationic groups can include e.g., protonated amino groups, derived from e.g., O-AMINE (AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino, ethylene diamine, polyamino); aminoalkoxy, e.g., O(CH2)nAMINE, (e.g., AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino, ethylene diamine, polyamino); amino (e.g. NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, diheteroaryl amino, or amino acid); or NH(CH2CH2NH)nCH2CH2-AMINE (AMINE=NH2; alkylamino, dialkylamino, heterocyclyl, arylamino, diaryl amino, heteroaryl amino, or diheteroaryl amino).
Nonphosphate Linkages
Modifications can also include the incorporation of nonphosphate linkages at the 5′ and/or 3′ end of a strand. Examples of nonphosphate linkages which can replace the phosphate group include methyl phosphonate, hydroxylamino, siloxane, carbonate, carboxymethyl, carbamate, amide, thioether, ethylene oxide linker, sulfonate, sulfonamide, thioformacetal, formacetal, oxime, methyleneimino, methylenemethylimino, methylenehydrazo, methylenedimethylhydrazo and methyleneoxymethylimino. Preferred replacements include the methyl phosphonate and hydroxylamino groups.
3′-Bridging Thiophosphates and 5′-Bridging Thiophosphates; Locked-RNA, 2′-5′ Likages, Inverted Linkages, α-Nucleosides; Conjugate Groups; Abasic Linkages; and 5′-Phosphonates and 5′-Phosphate Prodrugs
Referring to formula X above, modifications can include replacement of one of the bridging or linking phosphate oxygens in the phosphate backbone moiety (W and Z). Unlike the situation where only one of X or Y is altered, the phosphorus center in the phosphorodithioates is achiral which precludes the formation of iRNA agents containing a stereogenic phosphorus atom.
Modifications can also include linking two sugars via a phosphate or modified phosphate group through the 2′ position of a first sugar and the 5′ position of a second sugar. Also contemplated are inverted linkages in which both a first and second sugar are eached linked through the respective 3′ positions. Modified RNA's can also include “abasic” sugars, which lack a nucleobase at C-1′. The sugar group can also contain one or more carbons that possess the opposite stereochemical configuration than that of the corresponding carbon in ribose. Thus, a modified iRNA agent can include nucleotides containing e.g., arabinose, as the sugar. In another subset of this modification, the natural, unusual, or universal base may have the α-configuration. Modifications can also include L-RNA.
Modifications can also include 5′-phosphonates, e.g., P(O)(O−)2—X—C5′-sugar (X═CH2, CF2, CHF and 5′-phosphate prodrugs, e.g., P(O)[OCH2CH2SC(O)R]2CH2C5′-sugar. In the latter case, the prodrug groups may be decomposed via reaction first with carboxy esterases. The remaining ethyl thiolate group via intramolecular SN2 displacement can depart as episulfide to afford the underivatized phosphate group.
Modification can also include the addition of conjugating groups described elsewhere herein, which are preferably attached to an iRNA agent through any amino group available for conjugation.
Nuclease resistant modifications include some which can be placed only at the terminus and others which can go at any position. Generally the modifications that can inhibit hybridization so it is preferably to use them only in terminal regions, and preferable to not use them at the cleavage site or in the cleavage region of an sequence which targets a subject sequence or gene. The can be used anywhere in a sense sequence, provided that sufficient hybridization between the two sequences of the iRNA agent is maintained. In some embodiments it is desirable to put the NRM at the cleavage site or in the cleavage region of a sequence which does not target a subject sequence or gene, as it can minimize off-target silencing.
In addition, an iRNA agent described herein can have an overhang which does not form a duplex structure with the other sequence of the iRNA agent—it is an overhang, but it does hybridize, either with itself, or with another nucleic acid, other than the other sequence of the iRNA agent.
In most cases, the nuclease-resistance promoting modifications will be distributed differently depending on whether the sequence will target a sequence in the subject (often referred to as an anti-sense sequence) or will not target a sequence in the subject (often referred to as a sense sequence). If a sequence is to target a sequence in the subject, modifications which interfere with or inhibit endonuclease cleavage should not be inserted in the region which is subject to RISC mediated cleavage, e.g., the cleavage site or the cleavage region (As described in Elbashir et al., 2001, Genes and Dev. 15: 188, hereby incorporated by reference, cleavage of the target occurs about in the middle of a 20 or 21 nt guide RNA, or about 10 or 11 nucleotides upstream of the first nucleotide which is complementary to the guide sequence. As used herein cleavage site refers to the nucleotide on either side of the cleavage site, on the target or on the iRNA agent strand which hybridizes to it. Cleavage region means an nucleotide with 1, 2, or 3 nucleotides of the cleave site, in either direction.)
Such modifications can be introduced into the terminal regions, e.g., at the terminal position or with 2, 3, 4, or 5 positions of the terminus, of a sequence which targets or a sequence which does not target a sequence in the subject.
An iRNA agent can have a first and a second strand chosen from the following:
a first strand which does not target a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end;
a first strand which does not target a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end;
a first strand which does not target a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end and which has a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end;
a first strand which does not target a sequence and which has an NRM modification at the cleavage site or in the cleavage region;
a first strand which does not target a sequence and which has an NRM modification at the cleavage site or in the cleavage region and one or more of an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end, a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end, or NRM modifications at or within 1, 2, 3, 4, 5, or 6 positions from both the 3′ and the 5′ end; and
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end;
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand);
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end and which has a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end;
a second strand which targets a sequence and which preferably does not have an an NRM modification at the cleavage site or in the cleavage region;
a second strand which targets a sequence and which does not have an NRM modification at the cleavage site or in the cleavage region and one or more of an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end, a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end, or NRM modifications at or within 1, 2, 3, 4, 5, or 6 positions from both the 3′ and the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand).
An iRNA agent can also target two sequences and can have a first and second strand chosen from:
a first strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end;
a first strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand);
a first strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end and which has a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end;
a first strand which targets a sequence and which preferably does not have an an NRM modification at the cleavage site or in the cleavage region;
a first strand which targets a sequence and which dose not have an NRM modification at the cleavage site or in the cleavage region and one or more of an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end, a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end, or NRM modifications at or within 1, 2, 3, 4, 5, or 6 positions from both the 3′ and the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand) and
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end;
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand);
a second strand which targets a sequence and which has an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end and which has a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end;
a second strand which targets a sequence and which preferably does not have an NRM modification at the cleavage site or in the cleavage region;
a second strand which targets a sequence and which dose not have an NRM modification at the cleavage site or in the cleavage region and one or more of an NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 3′ end, a NRM modification at or within 1, 2, 3, 4, 5, or 6 positions from the 5′ end, or NRM modifications at or within 1, 2, 3, 4, 5, or 6 positions from both the 3′ and the 5′ end (5′ end NRM modifications are preferentially not at the terminus but rather at a position 1, 2, 3, 4, 5, or 6 away from the 5′ terminus of an antisense strand).
Ribose Mimics
In one aspect, the invention features a ribose mimic, or an iRNA agent which incorporates a ribose mimic, such as those described herein and those described in copending co-owned U.S. Provisional Application Ser. No. 60/454,962 , filed on Mar. 13, 2003, which is hereby incorporated by reference.
In addition, the invention includes iRNA agents having a ribose mimic and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an architecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates a ribose mimic
Thus, an aspect of the invention features an iRNA agent that includes a secondary hydroxyl group, which can increase efficacy and/or confer nuclease resistance to the agent. Nucleases, e.g., cellular nucleases, can hydrolyze nucleic acid phosphodiester bonds, resulting in partial or complete degradation of the nucleic acid. The secondary hydroxy group confers nuclease resistance to an iRNA agent by rendering the iRNA agent less prone to nuclease degradation relative to an iRNA which lacks the modification. While not wishing to be bound by theory, it is believed that the presence of a secondary hydroxyl group on the iRNA agent can act as a structural mimic of a 3′ ribose hydroxyl group, thereby causing it to be less susceptible to degradation.
The secondary hydroxyl group refers to an “OH” radical that is attached to a carbon atom substituted by two other carbons and a hydrogen. The secondary hydroxyl group that confers nuclease resistance as described above can be part of any acyclic carbon-containing group. The hydroxyl may also be part of any cyclic carbon-containing group, and preferably one or more of the following conditions is met (1) there is no ribose moiety between the hydroxyl group and the terminal phosphate group or (2) the hydroxyl group is not on a sugar moiety which is coupled to a base. The hydroxyl group is located at least two bonds (e.g., at least three bonds away, at least four bonds away, at least five bonds away, at least six bonds away, at least seven bonds away, at least eight bonds away, at least nine bonds away, at least ten bonds away, etc.) from the terminal phosphate group phosphorus of the iRNA agent. In preferred embodiments, there are five intervening bonds between the terminal phosphate group phosphorus and the secondary hydroxyl group.
Preferred iRNA agent delivery modules with five intervening bonds between the terminal phosphate group phosphorus and the secondary hydroxyl group have the following structure (see formula Y below):




Referring to formula Y, A is an iRNA agent, including any iRNA agent described herein. The iRNA agent may be connected directly or indirectly (e.g., through a spacer or linker) to “W” of the phosphate group. These spacers or linkers can include e.g., —(CH2)n—, —(CH2)nN—, —(CH2)nO—, —(CH2)nS—, O(CH2CH2O)nCH2CH2OH (e.g., n=3 or 6), abasic sugars, amide, carboxy, amine, oxyamine, oxyimine, thioether, disulfide, thiourea, sulfonamide, or morpholino, or biotin and fluorescein reagents.
The iRNA agents can have a terminal phosphate group that is unmodified (e.g., W, X, Y, and Z are O) or modified. In a modified phosphate group, W and Z can be independently NH, O, or S; and X and Y can be independently S, Se, BH3−, C1-C6 alkyl, C6-C10 aryl, H, O, O−, alkoxy or amino (including alkylamino, arylamino, etc.). Preferably, W, X and Z are O and Y is S.
R1 and R3 are each, independently, hydrogen; or C1-C100 alkyl, optionally substituted with hydroxyl, amino, halo, phosphate or sulfate and/or may be optionally inserted with N, O, S, alkenyl or alkynyl.
R2 is hydrogen; C1-C100 alkyl, optionally substituted with hydroxyl, amino, halo, phosphate or sulfate and/or may be optionally inserted with N, O, S, alkenyl or alkynyl; or, when n is 1, R2 may be taken together with R4 or R6 to form a ring of 5-12 atoms.
R4 is hydrogen; C1-C100 alkyl, optionally substituted with hydroxyl, amino, halo, phosphate or sulfate and/or may be optionally inserted with N, O, S, alkenyl or alkynyl; or, when n is 1, R4 may be taken together with R2 or R5 to form a ring of 5-12 atoms.
R5 is hydrogen, C1-C100 alkyl optionally substituted with hydroxyl, amino, halo, phosphate or sulfate and/or may be optionally inserted with N, O, S, alkenyl or alkynyl; or, when n is 1, R5 may be taken together with R4 to form a ring of 5-12 atoms.
R6 is hydrogen, C1-C100 alkyl, optionally substituted with hydroxyl, amino, halo, phosphate or sulfate and/or may be optionally inserted with N, O, S, alkenyl or alkynyl, or, when n is 1, R6 may be taken together with R2 to form a ring of 6-10 atoms;
R7 is hydrogen, C1-C100 alkyl, or C(O)(CH2)qC(O)NHR9; T is hydrogen or a functional group; n and q are each independently 1-100; R8 is C1-C10 alkyl or C6-C10 aryl; and R9 is hydrogen, C1-C10 alkyl, C6-C10 aryl or a solid support agent.
Preferred embodiments may include one of more of the following subsets of iRNA agent delivery modules.
In one subset of RNAi agent delivery modules, A can be connected directly or indirectly through a terminal 3′ or 5′ ribose sugar carbon of the RNA agent.
In another subset of RNAi agent delivery modules, X, W, and Z are O and Y is S.
In still yet another subset of RNAi agent delivery modules, n is 1, and R2 and R6 are taken together to form a ring containing six atoms and R4 and R5 are taken together to form a ring containing six atoms. Preferably, the ring system is a trans-decalin. For example, the RNAi agent delivery module of this subset can include a compound of Formula (Y-1):




The functional group can be, for example, a targeting group (e.g., a steroid or a carbohydrate), a reporter group (e.g., a fluorophore), or a label (an isotopically labelled moiety). The targeting group can further include protein binding agents, endothelial cell targeting groups (e.g., RGD peptides and mimetics), cancer cell targeting groups (e.g., folate Vitamin B12, Biotin), bone cell targeting groups (e.g., bisphosphonates, polyglutamates, polyaspartates), multivalent mannose (for e.g., macrophage testing), lactose, galactose, N-acetyl-galactosamine, monoclonal antibodies, glycoproteins, lectins, melanotropin, or thyrotropin.
As can be appreciated by the skilled artisan, methods of synthesizing the compounds of the formulae herein will be evident to those of ordinary skill in the art. The synthesized compounds can be separated from a reaction mixture and further purified by a method such as column chromatography, high pressure liquid chromatography, or recrystallization. Additionally, the various synthetic steps may be performed in an alternate sequence or order to give the desired compounds. Synthetic chemistry transformations and protecting group methodologies (protection and deprotection) useful in synthesizing the compounds described herein are known in the art and include, for example, those such as described in R. Larock, Comprehensive Organic Transformations, VCH Publishers (1989); T. W. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 2d. Ed., John Wiley and Sons (1991); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette, ed., Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995), and subsequent editions thereof.
Ribose Replacement Monomer Subunits
iRNA agents can be modified in a number of ways which can optimize one or more characteristics of the iRNA agent. In one aspect, the invention features a ribose replacement monomer subunit (RRMS), or a an iRNA agent which incorporates a RRMS, such as those described herein and those described in one or more of U.S. Provisional Application Ser. No. 60/493,986, filed on Aug. 8, 2003, which is hereby incorporated by reference; U.S. Provisional Application Ser. No. 60/494,597, filed on Aug. 11, 2003, which is hereby incorporated by reference; U.S. Provisional Application Ser. No. 60/506,341, filed on Sep. 26, 2003, which is hereby incorporated by reference; and in U.S. Provisional Application Ser. No. 60/158,453, filed on Nov. 7, 2003, which is hereby incorporated by reference.
In addition, the invention includes iRNA agents having a RRMS and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an archtecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates a RRMS.
The ribose sugar of one or more ribonucleotide subunits of an iRNA agent can be replaced with another moiety, e.g., a non-carbohydrate (preferably cyclic) carrier. A ribonucleotide subunit in which the ribose sugar of the subunit has been so replaced is referred to herein as a ribose replacement modification subunit (RRMS). A cyclic carrier may be a carbocyclic ring system, i.e., all ring atoms are carbon atoms, or a heterocyclic ring system, i.e., one or more ring atoms may be a heteroatom, e.g., nitrogen, oxygen, sulfur. The cyclic carrier may be a monocyclic ring system, or may contain two or more rings, e.g. fused rings. The cyclic carrier may be a fully saturated ring system, or it may contain one or more double bonds.
The carriers further include (i) at least two “backbone attachment points” and (ii) at least one “tethering attachment point.” A “backbone attachment point” as used herein refers to a functional group, e.g. a hydroxyl group, or generally, a bond available for, and that is suitable for incorporation of the carrier into the backbone, e.g., the phosphate, or modified phosphate, e.g., sulfur containing, backbone, of a ribonucleic acid. A “tethering attachment point” as used herein refers to a constituent ring atom of the cyclic carrier, e.g., a carbon atom or a heteroatom (distinct from an atom which provides a backbone attachment point), that connects a selected moiety. The moiety can be, e.g., a ligand, e.g., a targeting or delivery moiety, or a moiety which alters a physical property, e.g., lipophilicity, of an iRNA agent. Optionally, the selected moiety is connected by an intervening tether to the cyclic carrier. Thus, it will include a functional group, e.g., an amino group, or generally, provide a bond, that is suitable for incorporation or tethering of another chemical entity, e.g., a ligand to the constituent ring.
Incorporation of one or more RRMSs described herein into an RNA agent, e.g., an iRNA agent, particularly when tethered to an appropriate entity, can confer one or more new properties to the RNA agent and/or alter, enhance or modulate one or more existing properties in the RNA molecule. E.g., it can alter one or more of lipophilicity or nuclease resistance. Incorporation of one or more RRMSs described herein into an iRNA agent can, particularly when the RRMS is tethered to an appropriate entity, modulate, e.g., increase, binding affinity of an iRNA agent to a target mRNA, change the geometry of the duplex form of the iRNA agent, alter distribution or target the iRNA agent to a particular part of the body, or modify the interaction with nucleic acid binding proteins (e.g., during RISC formation and strand separation).
Accordingly, in one aspect, the invention features, an iRNA agent preferably comprising a first strand and a second strand, wherein at least one subunit having a formula (R-1) is incorporated into at least one of said strands.




Referring to formula (R-1), X is N(CO)R7, NR7 or CH2; Y is NR8, O, S, CR9R10, or absent; and Z is CR11R12 or absent.
Each of R1, R2, R3, R4, R9, and R10 is, independently, H, ORa, ORb, (CH2)nORa, or (CH2)nORb, provided that at least one of R1, R2, R3, R4, R9, and R10 is ORa or ORb and that at least one of R1, R2, R3, R4, R9, and R10 is (CH2)nORa, or (CH2)nORb (when the RRMS is terminal, one of R1, R2, R3, R4, R9, and R10 will include Ra and one will include Rb; when the RRMS is internal, two of R1, R2, R3, R4, R9, and R10 will each include an Rb); further provided that preferably ORa may only be present with (CH2)nORb and (CH2)nORa may only be present with ORb.
Each of R5, R6, R11, and R12 is, independently, H, C1-C6 alkyl optionally substituted with 1-3 R13, or C(O)NHR7; or R5 and R11 together are C3-C8 cycloalkyl optionally substituted with R14.
R7 is C1-C20 alkyl substituted with NRcRd; R8 is C1-C6 alkyl; R13 is hydroxy, C1-C4 alkoxy, or halo; and R14 is NRcR7.
Ra is:




and
Rb is:




Each of A and C is, independently, O or S.
B is OH, O−, or




Rc is H or C1-C6 alkyl; Rd is H or a ligand; and n is 1-4.
In a preferred embodiment the ribose is replaced with a pyrroline scaffold, and X is N(CO)R7 or NR7, Y is CR9R10, and Z is absent.
In other preferred embodiments the ribose is replaced with a piperidine scaffold, and X is N(CO)R7 or NR7, Y is CR9R10, and Z is CR11R12.
In other preferred embodiments the ribose is replaced with a piperazine scaffold, and X is N(CO)R7 or NR7, Y is NR8, and Z is CR11R12.
In other preferred embodiments the ribose is replaced with a morpholino scaffold, and X is N(CO)R7 or NR7, Y is O, and Z is CR11R12.
In other preferred embodiments the ribose is replaced with a decalin scaffold, and X is CH2; Y is CR9R10; and Z is CR11R12; and R5 and R11 together are C6 cycloalkyl.
In other preferred embodiments the ribose is replaced with a decalin/indane scafold and, and X is CH2; Y is CR9R10; and Z is CR11R12; and R5 and R11 together are C5 cycloalkyl.
In other preferred embodiments, the ribose is replaced with a hydroxyproline scaffold.
RRMSs described herein may be incorporated into any double-stranded RNA-like molecule described herein, e.g., an iRNA agent. An iRNA agent may include a duplex comprising a hybridized sense and antisense strand, in which the antisense strand and/or the sense strand may include one or more of the RRMSs described herein. An RRMS can be introduced at one or more points in one or both strands of a double-stranded iRNA agent. An RRMS can be placed at or near (within 1, 2, or 3 positions) of the 3′ or 5′ end of the sense strand or at near (within 2 or 3 positions of) the 3′ end of the antisense strand. In some embodiments it is preferred to not have an RRMS at or near (within 1, 2, or 3 positions of) the 5′ end of the antisense strand. An RRMS can be internal, and will preferably be positioned in regions not critical for antisense binding to the target.
In an embodiment, an iRNA agent may have an RRMS at (or within 1, 2, or 3 positions of) the 3′ end of the antisense strand. In an embodiment, an iRNA agent may have an RRMS at (or within 1, 2, or 3 positions of) the 3′ end of the antisense strand and at (or within 1, 2, or 3 positions of) the 3′ end of the sense strand. In an embodiment, an iRNA agent may have an RRMS at (or within 1, 2, or 3 positions of) the 3′ end of the antisense strand and an RRMS at the 5′ end of the sense strand, in which both ligands are located at the same end of the iRNA agent.
In certain embodiments, two ligands are tethered, preferably, one on each strand and are hydrophobic moieties. While not wishing to be bound by theory, it is believed that pairing of the hydrophobic ligands can stabilize the iRNA agent via intermolecular van der Waals interactions.
In an embodiment, an iRNA agent may have an RRMS at (or within 1, 2, or 3 positions of) the 3′ end of the antisense strand and an RRMS at the 5′ end of the sense strand, in which both RRMSs may share the same ligand (e.g., cholic acid) via connection of their individual tethers to separate positions on the ligand. A ligand shared between two proximal RRMSs is referred to herein as a “hairpin ligand.”
In other embodiments, an iRNA agent may have an RRMS at the 3′ end of the sense strand and an RRMS at an internal position of the sense strand. An iRNA agent may have an RRMS at an internal position of the sense strand; or may have an RRMS at an internal position of the antisense strand; or may have an RRMS at an internal position of the sense strand and an RRMS at an internal position of the antisense strand.
In preferred embodiments the iRNA agent includes a first and second sequences, which are preferably two separate molecules as opposed to two sequences located on the same strand, have sufficient complementarity to each other to hybridize (and thereby form a duplex region), e.g., under physiological conditions, e.g., under physiological conditions but not in contact with a helicase or other unwinding enzyme.
It is preferred that the first and second sequences be chosen such that the ds iRNA agent includes a single strand or unpaired region at one or both ends of the molecule. Thus, a ds iRNA agent contains first and second sequences, preferable paired to contain an overhang, e.g., one or two 5′ or 3′ overhangs but preferably a 3′ overhang of 2-3 nucleotides. Most embodiments will have a 3′ overhang. Preferred sRNA agents will have single-stranded overhangs, preferably 3′ overhangs, of 1 or preferably 2 or 3 nucleotides in length at each end. The overhangs can be the result of one strand being longer than the other, or the result of two strands of the same length being staggered. 5′ ends are preferably phosphorylated.
An RNA agent, e.g., an iRNA agent, containing a preferred, but nonlimiting RRMS is presented as formula (R-2) in FIG. 4. The carrier includes two “backbone attachment points” (hydroxyl groups), a “tethering attachment point,” and a ligand, which is connected indirectly to the carrier via an intervening tether. The RRMS may be the 5′ or 3′ terminal subunit of the RNA molecule, i.e., one of the two “W” groups may be a hydroxyl group, and the other “W” group may be a chain of two or more unmodified or modified ribonucleotides. Alternatively, the RRMS may occupy an internal position, and both “W” groups may be one or more unmodified or modified ribonucleotides. More than one RRMS may be present in a RNA molecule, e.g., an iRNA agent.
The modified RNA molecule of formula (R-2) can be obtained using oligonucleotide synthetic methods known in the art. In a preferred embodiment, the modified RNA molecule of formula (II) can be prepared by incorporating one or more of the corresponding RRMS monomer compounds (RRMS monomers, see, e.g., A, B, and C in FIG. 4) into a growing sense or antisense strand, utilizing, e.g., phosphoramidite or H-phosphonate coupling strategies.
The RRMS monomers generally include two differently functionalized hydroxyl groups (OFG1 and OFG2 above), which are linked to the carrier molecule (see A in FIG. 4), and a tethering attachment point. As used herein, the term “functionalized hydroxyl group” means that the hydroxyl proton has been replaced by another substituent. As shown in representative structures B and C, one hydroxyl group (OFG1) on the carrier is functionalized with a protecting group (PG). The other hydroxyl group (OFG2) can be functionalized with either (1) a liquid or solid phase synthesis support reagent (solid circle) directly or indirectly through a linker, L, as in B, or (2) a phosphorus-containing moiety, e.g., a phosphoramidite as in C. The tethering attachment point may be connected to a hydrogen atom, a tether, or a tethered ligand at the time that the monomer is incorporated into the growing sense or antisense strand (see R in Scheme 1). Thus, the tethered ligand can be, but need not be attached to the monomer at the time that the monomer is incorporated into the growing strand. In certain embodiments, the tether, the ligand or the tethered ligand may be linked to a “precursor” RRMS after a “precursor” RRMS monomer has been incorporated into the strand.
The (OFG1) protecting group may be selected as desired, e.g., from T. W. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, 2d. Ed., John Wiley and Sons (1991). The protecting group is preferably stable under amidite synthesis conditions, storage conditions, and oligonucleotide synthesis conditions. Hydroxyl groups, —OH, are nucleophilic groups (i.e., Lewis bases), which react through the oxygen with electrophiles (i.e., Lewis acids). Hydroxyl groups in which the hydrogen has been replaced with a protecting group, e.g., a triarylmethyl group or a trialkylsilyl group, are essentially unreactive as nucleophiles in displacement reactions. Thus, the protected hydroxyl group is useful in preventing e.g., homocoupling of compounds exemplified by structure C during oligonucleotide synthesis. A preferred protecting group is the dimethoxytrityl group.
When the OFG2 in B includes a linker, e.g., a long organic linker, connected to a soluble or insoluble support reagent, solution or solid phase synthesis techniques can be employed to build up a chain of natural and/or modified ribonucleotides once OFG1 is deprotected and free to react as a nucleophile with another nucleoside or monomer containing an electrophilic group (e.g., an amidite group). Alternatively, a natural or modified ribonucleotide or oligoribonucleotide chain can be coupled to monomer C via an amidite group or H-phosphonate group at OFG2. Subsequent to this operation, OFG1 can be deblocked, and the restored nucleophilic hydroxyl group can react with another nucleoside or monomer containing an electrophilic group (see FIG. 1). R′ can be substituted or unsubstituted alkyl or alkenyl. In preferred embodiments, R′ is methyl, allyl or 2-cyanoethyl. R′′ may a C1-C10 alkyl group, preferably it is a branched group containing three or more carbons, e.g., isopropyl.
OFG2 in B can be hydroxyl functionalized with a linker, which in turn contains a liquid or solid phase synthesis support reagent at the other linker terminus. The support reagent can be any support medium that can support the monomers described herein. The monomer can be attached to an insoluble support via a linker, L, which allows the monomer (and the growing chain) to be solubilized in the solvent in which the support is placed. The solubilized, yet immobilized, monomer can react with reagents in the surrounding solvent; unreacted reagents and soluble by-products can be readily washed away from the solid support to which the monomer or monomer-derived products is attached. Alternatively, the monomer can be attached to a soluble support moiety, e.g., polyethylene glycol (PEG) and liquid phase synthesis techniques can be used to build up the chain. Linker and support medium selection is within skill of the art. Generally the linker may be —C(O)(CH2)qC(O)—, or —C(O)(CH2)qS—, preferably, it is oxalyl, succinyl or thioglycolyl. Standard control pore glass solid phase synthesis supports can not be used in conjunction with fluoride labile 5′ silyl protecting groups because the glass is degraded by fluoride with a significant reduction in the amount of full-length product. Fluoride-stable polystyrene based supports or PEG are preferred.
Preferred carriers have the general formula (R-3) provided below. (In that structure preferred backbone attachment points can be chosen from R1 or R2; R3 or R4; or R9 and R10 if Y is CR9R10 (two positions are chosen to give two backbone attachment points, e.g., R1 and R4, or R4 and R9. Preferred tethering attachment points include R7; R5 or R6 when X is CH2. The carriers are described below as an entity, which can be incorporated into a strand. Thus, it is understood that the structures also encompass the situations wherein one (in the case of a terminal position) or two (in the case of an internal position) of the attachment points, e.g., R1 or R2; R3 or R4; or R9 or R10 (when Y is CR9R10), is connected to the phosphate, or modified phosphate, e.g., sulfur containing, backbone. E.g., one of the above-named R groups can be —CH2-, wherein one bond is connected to the carrier and one to a backbone atom, e.g., a linking oxygen or a central phosphorus atom.)




X is N(CO)R7, NR7 or CH2; Y is NR8, O, S, CR9R10; and Z is CR11R12 or absent.
Each of R1, R2, R3, R4, R9, and R10 is, independently, H, ORa, or (CH2)nORb, provided that at least two of R1, R2, R3, R4, R9, and R10 are ORa and/or (CH2)nORb.
Each of R5, R6, R11, and R12 is, independently, a ligand, H, C1-C6 alkyl optionally substituted with 1-3 R13, or C(O)NHR7; or R5 and R11 together are C3-C8 cycloalkyl optionally substituted with R14.
R7 is H, a ligand, or C1-C20 alkyl substituted with NRcRd; R8 is H or C1-C6 alkyl; R13 is hydroxy, C1-C4 alkoxy, or halo; R14 is NRcR7; R15 is C1-C6 alkyl optionally substituted with cyano, or C2-C6 alkenyl; R16 is C1-C10 alkyl; and R17 is a liquid or solid phase support reagent.
L is —C(O)(CH2)qC(O)—, or —C(O)(CH2)qS—; Ra is CAr3; Rb is P(O)(O−)H, P(OR15)N(R16)2 or L-R17; Rc is H or C1-C6 alkyl; and Rd is H or a ligand.
Each Ar is, independently, C6-C10 aryl optionally substituted with C1-C4 alkoxy; n is 1-4; and q is 0-4.
Exemplary carriers include those in which, e.g., X is N(CO)R7 or NR7, Y is CR9R10, and Z is absent; or X is N(CO)R7 or NR7, Y is CR9R10, and Z is CR11R12; or X is N(CO)R7 or NR7, Y is NR8, and Z is CR11R12; or X is N(CO)R7 or NR7, Y is O, and Z is CR11R12; or X is CH2; Y is CR9R10; Z is CR11R12, and R5 and R11 together form C6 cycloalkyl (H, z=2), or the indane ring system, e.g., X is CH2; Y is CR9R10; Z is CR11R12 and R5 and R11 together form C5 cycloalkyl (H, z=1).
In certain embodiments, the carrier may be based on the pyrroline ring system or the 3-hydroxyproline ring system, e.g., X is N(CO)R7 or NR7, Y is CR9R10, and Z is absent (D). OFG1 is preferably attached to a primary carbon, e.g., an exocyclic alkylene




group, e.g., a methylene group, connected to one of the carbons in the five-membered ring (—CH2OFG1 in D). OFG2 is preferably attached directly to one of the carbons in the five-membered ring (—OFG2 in D). For the pyrroline-based carriers, —CH2OFG′ may be attached to C-2 and OFG2 may be attached to C-3; or —CH2OFG′ may be attached to C-3 and OFG2 may be attached to C-4. In certain embodiments, CH2OFG′ and OFG2 may be geminally substituted to one of the above-referenced carbons. For the 3-hydroxyproline-based carriers, —CH2OFG1 may be attached to C-2 and OFG2 may be attached to C-4. The pyrroline- and 3-hydroxyproline-based monomers may therefore contain linkages (e.g., carbon-carbon bonds) wherein bond rotation is restricted about that particular linkage, e.g. restriction resulting from the presence of a ring. Thus, CH2OFG1 and OFG2 may be cis or trans with respect to one another in any of the pairings delineated above Accordingly, all cis/trans isomers are expressly included. The monomers may also contain one or more asymmetric centers and thus occur as racemates and racemic mixtures, single enantiomers, individual diastereomers and diastereomeric mixtures. All such isomeric forms of the monomers are expressly included. The tethering attachment point is preferably nitrogen.

In certain embodiments, the carrier may be based on the piperidine ring system (E), e.g., X is N(CO)R7 or NR7, Y is CR9R10, and Z is CR11R12. OFG1 is preferably




attached to a primary carbon, e.g., an exocyclic alkylene group, e.g., a methylene group (n=1) or ethylene group (n=2), connected to one of the carbons in the six-membered ring [—(CH2)nOFG1 in E]. OFG2 is preferably attached directly to one of the carbons in the six-membered ring (—OFG2 in E). —(CH2)nOFG1 and OFG2 may be disposed in a geminal manner on the ring, i.e., both groups may be attached to the same carbon, e.g., at C-2, C-3, or C-4. Alternatively, —(CH2)nOFG1 and OFG2 may be disposed in a vicinal manner on the ring, i.e., both groups may be attached to adjacent ring carbon atoms, e.g., —(CH2)nOFG1 may be attached to C-2 and OFG2 may be attached to C-3; —(CH2)nOFG1 may be attached to C-3 and OFG2 may be attached to C-2; —(CH2)nOFG1 may be attached to C-3 and OFG2 may be attached to C-4; or —(CH2)nOFG1 may be attached to C-4 and OFG2 may be attached to C-3. The piperidine-based monomers may therefore contain linkages (e.g., carbon-carbon bonds) wherein bond rotation is restricted about that particular linkage, e.g. restriction resulting from the presence of a ring. Thus, —(CH2)nOFG1 and OFG2 may be cis or trans with respect to one another in any of the pairings delineated above. Accordingly, all cis/trans isomers are expressly included. The monomers may also contain one or more asymmetric centers and thus occur as racemates and racemic mixtures, single enantiomers, individual diastereomers and diastereomeric mixtures. All such isomeric forms of the monomers are expressly included. The tethering attachment point is preferably nitrogen.

In certain embodiments, the carrier may be based on the piperazine ring system (F), e.g., X is N(CO)R7 or NR7, Y is NR8, and Z is CR11R12, or the morpholine ring system (G), e.g., X is N(CO)R7 or NR7, Y is O, and Z is CR11R12. OFG1 is preferably




attached to a primary carbon, e.g., an exocyclic alkylene group, e.g., a methylene group, connected to one of the carbons in the six-membered ring (—CH2OFG1 in F or G). OFG2 is preferably attached directly to one of the carbons in the six-membered rings (—OFG2 in F or G). For both F and G, —CH2OFG1 may be attached to C-2 and OFG2 may be attached to C-3; or vice versa. In certain embodiments, CH2OFG1 and OFG2 may be geminally substituted to one of the above-referenced carbons. The piperazine- and morpholine-based monomers may therefore contain linkages (e.g., carbon-carbon bonds) wherein bond rotation is restricted about that particular linkage, e.g. restriction resulting from the presence of a ring. Thus, CH2OFG1 and OFG2 may be cis or trans with respect to one another in any of the pairings delineated above. Accordingly, all cis/trans isomers are expressly included. The monomers may also contain one or more asymmetric centers and thus occur as racemates and racemic mixtures, single enantiomers, individual diastereomers and diastereomeric mixtures. All such isomeric forms of the monomers are expressly included. R′′′ can be, e.g., C1-C6 alkyl, preferably CH3. The tethering attachment point is preferably nitrogen in both F and G.

In certain embodiments, the carrier may be based on the decalin ring system, e.g., X is CH2; Y is CR9R10; Z is CR11R12, and R5 and R11 together form C6 cycloalkyl (H, z=2), or the indane ring system, e.g., X is CH2; Y is CR9R10; Z is CR11R12, and R5 and R11 together form C5 cycloalkyl (H, z=1). OFG1 is preferably attached to a primary carbon,




e.g., an exocyclic methylene group (n=1) or ethylene group (n=2) connected to one of C-2, C-3, C-4, or C-5 [—(CH2)nOFG1 in H]. OFG2 is preferably attached directly to one of C-2, C-3, C-4, or C-5 (—OFG2 in H). —(CH2)nOFG1 and OFG2 may be disposed in a geminal manner on the ring, i.e., both groups may be attached to the same carbon, e.g., at C-2, C-3, C-4, or C-5. Alternatively, —(CH2)nOFG1 and OFG2 may be disposed in a vicinal manner on the ring, i.e., both groups may be attached to adjacent ring carbon atoms, e.g., —(CH2)nOFG1 may be attached to C-2 and OFG2 may be attached to C-3; —(CH2)nOFG1 may be attached to C-3 and OFG2 may be attached to C-2; —(CH2)nOFG1 may be attached to C-3 and OFG2 may be attached to C-4; or —(CH2)nOFG1 may be attached to C-4 and OFG2 may be attached to C-3; —(CH2)nOFG1 may be attached to C-4 and OFG2 may be attached to C-5; or —(CH2)nOFG1 may be attached to C-5 and OFG2 may be attached to C-4. The decalin or indane-based monomers may therefore contain linkages (e.g., carbon-carbon bonds) wherein bond rotation is restricted about that particular linkage, e.g. restriction resulting from the presence of a ring. Thus, —(CH2)nOFG1 and OFG2 may be cis or trans with respect to one another in any of the pairings delineated above. Accordingly, all cis/trans isomers are expressly included. The monomers may also contain one or more asymmetric centers and thus occur as racemates and racemic mixtures, single enantiomers, individual diastereomers and diastereomeric mixtures. All such isomeric forms of the monomers are expressly included. In a preferred embodiment, the substituents at C-1 and C-6 are trans with respect to one another. The tethering attachment point is preferably C-6 or C-7.

Other carriers may include those based on 3-hydroxyproline (J). Thus, —(CH2)nOFG1 and OFG2 may be cis or trans with respect to one another. Accordingly, all cis/trans isomers are expressly included. The monomers may also contain one or more asymmetric centers




and thus occur as racemates and racemic mixtures, single enantiomers, individual diastereomers and diastereomeric mixtures. All such isomeric forms of the monomers are expressly included. The tethering attachment point is preferably nitrogen.

Representative carriers are shown in FIG. 5.
In certain embodiments, a moiety, e.g., a ligand may be connected indirectly to the carrier via the intermediacy of an intervening tether. Tethers are connected to the carrier at the tethering attachment point (TAP) and may include any C1-C100 carbon-containing moiety, (e.g. C1-C75, C1-C50, C1-C20, C1-C10,C1-C6), preferably having at least one nitrogen atom. In preferred embodiments, the nitrogen atom forms part of a terminal amino group on the tether, which may serve as a connection point for the ligand. Preferred tethers (underlined) include TAP-(CH2)nNH2; TAP-C(O)(CH2)nNH2; or TAP-NR′′′′(CH2)nNH2, in which n is 1-6 and R′′′′ is C1-C6 alkyl. and Rd is hydrogen or a ligand. In other embodiments, the nitrogen may form part of a terminal oxyamino group, e.g., —ONH2, or hydrazino group, —NHNH2. The tether may optionally be substituted, e.g., with hydroxy, alkoxy, perhaloalkyl, and/or optionally inserted with one or more additional heteroatoms, e.g., N, O, or S. Preferred tethered ligands may include, e.g., TAP-(CH2)nNH(LIGAND), TAP-C(O)(CH2)nNH(LIGAND), or TAP-NR′′′′(CH2)nNH(LIGAND); TAP-(CH2)nONH(LIGAND), TAP-C(O)(CH2)nONH(LIGAND), or TAP-NR′′′′(CH2)nONH(LIGAND); TAP-(CH2)nNHNH2(LIGAND), TAP-C(O)(CH2)nNHNH2(LIGAND), or TAP-NR′′′′(CH2)nNHNH2(LIGAND).
In other embodiments the tether may include an electrophilic moiety, preferably at the terminal position of the tether. Preferred electrophilic moieties include, e.g., an aldehyde, alkyl halide, mesylate, tosylate, nosylate, or brosylate, or an activated carboxylic acid ester, e.g. an NHS ester, or a pentafluorophenyl ester. Preferred tethers (underlined) include TAP-(CH2)nCHO; TAP-C(O)(CH2)nCHO; or TAP-NR′′′′(CH2)nCHO, in which n is 1-6 and R′′′′ is C1-C6 alkyl; or TAP-(CH2)nC(O)ONHS; TAP-C(O)(CH2)nC(O)ONHS; or TAP-NR′′′′(CH2)nC(O)ONHS, in which n is 1-6 and R′′′′ is C1-C6 alkyl; TAP-(CH2)nC(O)OC6F5; TAP-C(O)(CH2)nC(O)OC6F5; or TAP-NR′′′′(CH2)nC(O)OC6F5, in which n is 1-6 and R′′′′ is C1-C6 alkyl; or —(CH2)nCH2LG; TAP-C(O)(CH2)nCH2LG; or TAP-NR′′′′(CH2)nCH2LG, in which n is 1-6 and R′′′′ is C1-C6 alkyl (LG can be a leaving group, e.g., halide, mesylate, tosylate, nosylate, brosylate). Tethering can be carried out by coupling a nucleophilic group of a ligand, e.g., a thiol or amino group with an electrophilic group on the tether.
Tethered Entities
A wide variety of entities can be tethered to an iRNA agent, e.g., to the carrier of an RRMS. Examples are described below in the context of an RRMS but that is only preferred, entities can be coupled at other points to an iRNA agent.
Preferred moieties are ligands, which are coupled, preferably covalently, either directly or indirectly via an intervening tether, to the RRMS carrier. In preferred embodiments, the ligand is attached to the carrier via an intervening tether. As discussed above, the ligand or tethered ligand may be present on the RRMS monomer when the RRMS monomer is incorporated into the growing strand. In some embodiments, the ligand may be incorporated into a “precursor” RRMS after a “precursor” RRMS monomer has been incorporated into the growing strand. For example, an RRMS monomer having, e.g., an amino-terminated tether (i.e., having no associated ligand), e.g., TAP-(CH2)nNH2 may be incorporated into a growing sense or antisense strand. In a subsequent operation, i.e., after incorporation of the precursor monomer into the strand, a ligand having an electrophilic group, e.g., a pentafluorophenyl ester or aldehyde group, can subsequently be attached to the precursor RRMS by coupling the electrophilic group of the ligand with the terminal nucleophilic group of the precursor RRMS tether.
In preferred embodiments, a ligand alters the distribution, targeting or lifetime of an iRNA agent into which it is incorporated. In preferred embodiments a ligand provides an enhanced affinity for a selected target, e.g, molecule, cell or cell type, compartment, e.g., a cellular or organ compartment, tissue, organ or region of the body, as, e.g., compared to a species absent such a ligand. Preferred ligands will not take part in duplex pairing in a duplexed nucleic acid.
Preferred ligands can improve transport, hybridization, and specificity properties and may also improve nuclease resistance of the resultant natural or modified oligoribonucleotide, or a polymeric molecule comprising any combination of monomers described herein and/or natural or modified ribonucleotides.
Ligands in general can include therapeutic modifiers, e.g., for enhancing uptake; diagnostic compounds or reporter groups e.g., for monitoring distribution; cross-linking agents; and nuclease-resistance conferring moieties. General examples include lipids, steroids, vitamins, sugars, proteins, peptides, polyamines, and peptide mimics.
Ligands can include a naturally occurring substance, such as a protein (e.g., human serum albumin (HSA), low-density lipoprotein (LDL), or globulin); carbohydrate (e.g., a dextran, pullulan, chitin, chitosan, inulin, cyclodextrin or hyaluronic acid); or a lipid. The ligand may also be a recombinant or synthetic molecule, such as a synthetic polymer, e.g., a synthetic polyamino acid. Examples of polyamino acids include polyamino acid is a polylysine (PLL), poly L-aspartic acid, poly L-glutamic acid, styrene-maleic acid anhydride copolymer, poly(L-lactide-co-glycolied) copolymer, divinyl ether-maleic anhydride copolymer, N-(2-hydroxypropyl)methacrylamide copolymer (HMPA), polyethylene glycol (PEG), polyvinyl alcohol (PVA), polyurethane, poly(2-ethylacryllic acid), N-isopropylacrylamide polymers, or polyphosphazine. Example of polyamines include: polyethylenimine, polylysine (PLL), spermine, spermidine, polyamine, pseudopeptide-polyamine, peptidomimetic polyamine, dendrimer polyamine, arginine, amidine, protamine, cationic lipid, cationic porphyrin, quaternary salt of a polyamine, or an alpha helical peptide.
Ligands can also include targeting groups, e.g., a cell or tissue targeting agent, e.g., a lectin, glycoprotein, lipid or protein, e.g., an antibody, that binds to a specified cell type such as a cancer cell, endothelial cell, bone cell. A targeting group can be a thyrotropin, melanotropin, lectin, glycoprotein, surfactant protein A, Mucin carbohydrate, multivalent lactose, multivalent galactose, N-acetyl-galactosamine, N-acetyl-gulucosamine multivalent mannose, multivalent fucose, glycosylated polyaminoacids, multivalent galactose, transferrin, bisphosphonate, polyglutamate, polyaspartate, a lipid, cholesterol, a steroid, bile acid, folate, vitamin B12, biotin, or an RGD peptide or RGD peptide mimetic.
Other examples of ligands include dyes, intercalating agents (e.g. acridines), cross-linkers (e.g. psoralene, mitomycin C), porphyrins (TPPC4, texaphyrin, Sapphyrin), polycyclic aromatic hydrocarbons (e.g., phenazine, dihydrophenazine), artificial endonucleases (e.g. EDTA), lipophilic molecules, e.g, cholesterol, cholic acid, adamantane acetic acid, 1-pyrene butyric acid, dihydrotestosterone, 1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol, borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid, myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid, dimethoxytrityl, or phenoxazine) and peptide conjugates (e.g., antennapedia peptide, Tat peptide), alkylating agents, phosphate, amino, mercapto, PEG (e.g., PEG-40K), MPEG, [MPEG]2, polyamino, alkyl, substituted alkyl, radiolabeled markers, enzymes, haptens (e.g. biotin), transport/absorption facilitators (e.g., aspirin, vitamin E, folic acid), synthetic ribonucleases (e.g., imidazole, bisimidazole, histamine, imidazole clusters, acridine-imidazole conjugates, Eu3+ complexes of tetraazamacrocycles), dinitrophenyl, HRP, or AP.
Ligands can be proteins, e.g., glycoproteins, or peptides, e.g., molecules having a specific affinity for a co-ligand, or antibodies e.g., an antibody, that binds to a specified cell type such as a cancer cell, endothelial cell, or bone cell. Ligands may also include hormones and hormone receptors. They can also include non-peptidic species, such as lipids, lectins, carbohydrates, vitamins, cofactors, multivalent lactose, multivalent galactose, N-acetyl-galactosamine, N-acetyl-gulucosamine multivalent mannose, or multivalent fucose. The ligand can be, for example, a lipopolysaccharide, an activator of p38 MAP kinase, or an activator of NF-κB.
The ligand can be a substance, e.g, a drug, which can increase the uptake of the iRNA agent into the cell, for example, by disrupting the cell's cytoskeleton, e.g., by disrupting the cell's microtubules, microfilaments, and/or intermediate filaments. The drug can be, for example, taxon, vincristine, vinblastine, cytochalasin, nocodazole, japlakinolide, latrunculin A, phalloidin, swinholide A, indanocine, or myoservin.
The ligand can increase the uptake of the iRNA agent into the cell by activating an inflammatory response, for example. Exemplary ligands that would have such an effect include tumor necrosis factor alpha (TNFalpha), interleukin-1 beta, or gamma interferon.
In one aspect, the ligand is a lipid or lipid-based molecule. Such a lipid or lipid-based molecule preferably binds a serum protein, e.g., human serum albumin (HSA). An HSA binding ligand allows for distribution of the conjugate to a target tissue, e.g., a non-kidney target tissue of the body. Preferably, the target tissue is the liver, preferably parenchymal cells of the liver. Other molecules that can bind HSA can also be used as ligands. For example, neproxin or aspirin can be used. A lipid or lipid-based ligand can (a) increase resistance to degradation of the conjugate, (b) increase targeting or transport into a target cell or cell membrane, and/or (c) can be used to adjust binding to a seru protein, e.g., HSA.
A lipid based ligand can be used to modulate, e.g., control the binding of the conjugate to a target tissue. For example, a lipid or lipid-based ligand that binds to HSA more strongly will be less likely to be targeted to the kidney and therefore less likely to be cleared from the body. A lipid or lipid-based ligand that binds to HSA less strongly can be used to target the conjugate to the kidney.
In a preferred embodiment, the lipid based ligand binds HSA. Preferably, it binds HSA with a sufficient affinity such that the conjugate will be preferably distributed to a non-kidney tissue. However, it is preferred that the affinity not be so strong that the HSA-ligand binding cannot be reversed.
In another preferred embodiment, the lipid based ligand binds HSA weakly or not at all, such that the conjugate will be preferably distributed to the kidney. Other moieties that target to kidney cells can also be used in place of or in addition to the lipid based ligand.
In another aspect, the ligand is a moiety, e.g., a vitamin, which is taken up by a target cell, e.g., a proliferating cell. These are particularly useful for treating disorders characterized by unwanted cell proliferation, e.g., of the malignant or non-malignant type, e.g., cancer cells. Exemplary vitamins include vitamin A, E, and K. Other exemplary vitamins include are B vitamin, e.g., folic acid, B12, riboflavin, biotin, pyridoxal or other vitamins or nutrients taken up by cancer cells. Also included are HSA and low density lipoprotein (LDL).
In another aspect, the ligand is a cell-permeation agent, preferably a helical cell-permeation agent. Preferably, the agent is amphipathic. An exemplary agent is a peptide such as tat or antennopedia. If the agent is a peptide, it can be modified, including a peptidylmimetic, invertomers, non-peptide or pseudo-peptide linkages, and use of D-amino acids. The helical agent is preferably an alpha-helical agent, which preferably has a lipophilic and a lipophobic phase.
The ligand can be a peptide or peptidomimetic. A peptidomimetic (also referred to herein as an oligopeptidomimetic) is a molecule capable of folding into a defined three-dimensional structure similar to a natural peptide. The attachment of peptide and peptidomimetics to iRNA agents can affect pharmacokinetic distribution of the iRNA, such as by enhancing cellular recognition and absorption. The peptide or peptidomimetic moiety can be about 5-50 amino acids long, e.g., about 5, 10, 15, 20, 25, 30, 35, 40, 45, or 50 amino acids long (see Table 1, for example).







TABLE 1







Exemplary Cell Permeation Peptides









Cell




Permeation


Peptide
Amino acid Sequence
Reference





Penetratin
RQIKIWFQNRRMKWKK (SEQ ID NO: 6737)
Derossi et al., J. Biol.




Chem. 269: 10444,




1994


 


Tat fragment
GRKKRRQRRRPPQC (SEQ ID NO: 6738)
Vives et al., J. Biol.


(48-60)

Chem., 272: 16010,




1997


 


Signal
GALFLGWLGAAGSTMGAWSQPKKKRKV
Chaloin et al.,


Sequence-
(SEQ ID NO: 6738)
Biochem. Biophys.


based peptide

Res. Commun.,




243: 601, 1998


 


PVEC
LLIILRRRIRKQAHAHSK (SEQ ID NO: 6739)
Elmquist et al., Exp.




Cell Res., 269: 237,




2001


 


Transportan
GWTLNSAGYLLKINLKALAALAKKIL
Pooga et al., FASEB



(SEQ ID NO: 6740)
J., 12: 67, 1998


 


Amphiphilic
KLALKLALKALKAALKLA (SEQ ID
Oehlke et al., Mol.


model peptide
NO: 6741)
Ther., 2: 339, 2000


 


Arg9
RRRRRRRRR (SEQ ID NO: 6742)
Mitchell et al., J.




Pept. Res., 56: 318,




2000


 


Bacterial cell
KFFKFFKFFK (SEQ ID NO: 6743)


wall


permeating


 


LL-37
LLGDFFRKSKEKIGKEFKRIVQRIKDFLRN



LVPRTES (SEQ ID NO: 6744)


 


Cecropin P1
SWLSKTAKKLENSAKKRISEGIAIAIQGGP



R (SEQ ID NO: 6745)


 


α-defensin
ACYCRIPACIAGERRYGTCIYQGRLWAFC



C (SEQ ID NO: 6746)


 


b-defensin
DHYNCVSSGGQCLYSACPIFTKIQGTCYR



GKAKCCK (SEQ ID NO: 6747)


 


Bactenecin
RKCRIVVIRVCR (SEQ ID NO: 6748)


 


PR-39
RRRPRPPYLPRPRPPPFFPPRLPPRIPPGFPP



RFPPRFPGKR-NH2 (SEQ ID NO: 6749)


 


Indolicidin
ILPWKWPWWPWRR-NH2 (SEQ ID



NO: 6750)









A peptide or peptidomimetic can be, for example, a cell permeation peptide, cationic peptide, amphipathic peptide, or hydrophobic peptide (e.g., consisting primarily of Tyr, Trp or Phe). The peptide moiety can be a dendrimer peptide, constrained peptide or crosslinked peptide. In another alternative, the peptide moiety can include a hydrophobic membrane translocation sequence (MTS). An exemplary hydrophobic MTS-containing peptide is RFGF having the amino acid sequence AAVALLPAVLLALLAP (SEQ ID NO:6751). An RFGF analogue (e.g., amino acid sequence AALLPVLLAAP (SEQ ID NO:6752)) containing a hydrophobic MTS can also be a targeting moiety. The peptide moiety can be a “delivery” peptide, which can carry large polar molecules including peptides, oligonucleotides, and protein across cell membranes. For example, sequences from the HIV Tat protein (GRKKRRQRRRPPQ (SEQ ID NO:6753)) and the Drosophila Antennapedia protein (RQIKIWFQNRRMKWKK (SEQ ID NO:6754)) have been found to be capable of functioning as delivery peptides. A peptide or peptidomimetic can be encoded by a random sequence of DNA, such as a peptide identified from a phage-display library, or one-bead-one-compound (OBOC) combinatorial library (Lam et al., Nature, 354:82-84, 1991). Preferably the peptide or peptidomimetic tethered to an iRNA agent via an incorporated monomer unit is a cell targeting peptide such as an arginine-glycine-aspartic acid (RGD)-peptide, or RGD mimic A peptide moiety can range in length from about 5 amino acids to about 40 amino acids. The peptide moieties can have a structural modification, such as to increase stability or direct conformational properties. Any of the structural modifications described below can be utilized.
An RGD peptide moiety can be used to target a tumor cell, such as an endothelial tumor cell or a breast cancer tumor cell (Zitzmann et al., Cancer Res., 62:5139-43, 2002). An RGD peptide can facilitate targeting of an iRNA agent to tumors of a variety of other tissues, including the lung, kidney, spleen, or liver (Aoki et al., Cancer Gene Therapy 8:783-787, 2001). The RGD peptide can be linear or cyclic, and can be modified, e.g., glycosylated or methylated to facilitate targeting to specific tissues. For example, a glycosylated RGD peptide can deliver an iRNA agent to a tumor cell expressing αVβ3 (Haubner et al., Jour. Nucl. Med., 42:326-336, 2001).
Peptides that target markers enriched in proliferating cells can be used. E.g., RGD containing peptides and peptidomimetics can target cancer cells, in particular cells that exhibit an Ivδ3 integrin. Thus, one could use RGD peptides, cyclic peptides containing RGD, RGD peptides that include D-amino acids, as well as synthetic RGD mimics. In addition to RGD, one can use other moieties that target the Ivδ3 integrin ligand. Generally, such ligands can be used to control proliferating cells and angiogeneis. Preferred conjugates of this type include an iRNA agent that targets PECAM-1, VEGF, or other cancer gene, e.g., a cancer gene described herein.
A “cell permeation peptide” is capable of permeating a cell, e.g., a microbial cell, such as a bacterial or fungal cell, or a mammalian cell, such as a human cell. A microbial cell-permeating peptide can be, for example, an α-helical linear peptide (e.g., LL-37 or Ceropin P1), a disulfide bond-containing peptide (e.g., α-defensin, β-defensin or bactenecin), or a peptide containing only one or two dominating amino acids (e.g., PR-39 or indolicidin). A cell permeation peptide can also include a nuclear localization signal (NLS). For example, a cell permeation peptide can be a bipartite amphipathic peptide, such as MPG, which is derived from the fusion peptide domain of HIV-1 gp41 and the NLS of SV40 large T antigen (Simeoni et al., Nucl. Acids Res. 31:2717-2724, 2003).
In one embodiment, a targeting peptide tethered to an RRMS can be an amphipathic α-helical peptide. Exemplary amphipathic α-helical peptides include, but are not limited to, cecropins, lycotoxins, paradaxins, buforin, CPF, bombinin-like peptide (BLP), cathelicidins, ceratotoxins, S. clava peptides, hagfish intestinal antimicrobial peptides (HFIAPs), magainines, brevinins-2, dermaseptins, melittins, pleurocidin, H2A peptides, Xenopus peptides, esculentinis-1, and caerins. A number of factors will preferably be considered to maintain the integrity of helix stability. For example, a maximum number of helix stabilization residues will be utilized (e.g., leu, ala, or lys), and a minimum number helix destabilization residues will be utilized (e.g., proline, or cyclic monomeric units. The capping residue will be considered (for example Gly is an exemplary N-capping residue and/or C-terminal amidation can be used to provide an extra H-bond to stabilize the helix. Formation of salt bridges between residues with opposite charges, separated by i±3, or i±4 positions can provide stability. For example, cationic residues such as lysine, arginine, homo-arginine, ornithine or histidine can form salt bridges with the anionic residues glutamate or aspartate.
Peptide and petidomimetic ligands include those having naturally occurring or modified peptides, e.g., D or L peptides; α, β, or γ peptides; N-methyl peptides; azapeptides; peptides having one or more amide, i.e., peptide, linkages replaced with one or more urea, thiourea, carbamate, or sulfonyl urea linkages; or cyclic peptides.
Methods for Making iRNA Agents
iRNA agents can include modified or non-naturally occurring bases, e.g., bases described in copending and coowned U.S. Provisional Application Ser. No. 60/463,772, filed on Apr. 17, 2003, which is hereby incorporated by reference and/or in copending and coowned U.S. Provisional Application Ser. No. 60/465,802, filed on Apr. 25, 2003, which is hereby incorporated by reference. Monomers and iRNA agents which include such bases can be made by the methods found in U.S. Provisional Application Ser. No. 60/463,772, filed on Apr. 17, 2003, and/or in U.S. Provisional Application Ser. No. 60/465,802, filed on Apr. 25, 2003.
In addition, the invention includes iRNA agents having a modified or non-naturally occurring base and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an architecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates a modified or non-naturally occurring base.
The synthesis and purification of oligonucleotide peptide conjugates can be performed by established methods. See, for example, Trufert et al., Tetrahedron, 52:3005, 1996; and Manoharan, “Oligonucleotide Conjugates in Antisense Technology,” in Antisense Drug Technology, ed. S. T. Crooke, Marcel Dekker, Inc., 2001.
In one embodiment of the invention, a peptidomimetic can be modified to create a constrained peptide that adopts a distinct and specific preferred conformation, which can increase the potency and selectivity of the peptide. For example, the constrained peptide can be an azapeptide (Gante, Synthesis, 405-413, 1989). An azapeptide is synthesized by replacing the α-carbon of an amino acid with a nitrogen atom without changing the structure of the amino acid side chain. For example, the azapeptide can be synthesized by using hydrazine in traditional peptide synthesis coupling methods, such as by reacting hydrazine with a “carbonyl donor,” e.g., phenylchloroformate.
In one embodiment of the invention, a peptide or peptidomimetic (e.g., a peptide or peptidomimetic tethered to an RRMS) can be an N-methyl peptide. N-methyl peptides are composed of N-methyl amino acids, which provide an additional methyl group in the peptide backbone, thereby potentially providing additional means of resistance to proteolytic cleavage. N-methyl peptides can by synthesized by methods known in the art (see, for example, Lindgren et al., Trends Pharmacol. Sci. 21:99, 2000; Cell Penetrating Peptides: Processes and Applications, Langel, ed., CRC Press, Boca Raton, Fla., 2002; Fische et al., Bioconjugate. Chem. 12: 825, 2001; Wander et al., J. Am. Chem. Soc., 124:13382, 2002). For example, an Ant or Tat peptide can be an N-methyl peptide.
In one embodiment of the invention, a peptide or peptidomimetic (e.g., a peptide or peptidomimetic tethered to an RRMS) can be β-peptide. β-peptides form stable secondary structures such as helices, pleated sheets, turns and hairpins in solutions. Their cyclic derivatives can fold into nanotubes in the solid state. β-peptides are resistant to degradation by proteolytic enzymes. β-peptides can be synthesized by methods known in the art. For example, an Ant or Tat peptide can be a β-peptide.
In one embodiment of the invention, a peptide or peptidomimetic (e.g., a peptide or peptidomimetic tethered to an RRMS) can be a oligocarbamate. Oligocarbamate peptides are internalized into a cell by a transport pathway facilitated by carbamate transporters. For example, an Ant or Tat peptide can be an oligocarbamate.
In one embodiment of the invention, a peptide or peptidomimetic (e.g., a peptide or peptidomimetic tethered to an RRMS) can be an oligourea conjugate (or an oligothiourea conjugate), in which the amide bond of a peptidomimetic is replaced with a urea moiety. Replacement of the amide bond provides increased resistance to degradation by proteolytic enzymes, e.g., proteolytic enzymes in the gastrointestinal tract. In one embodiment, an oligourea conjugate is tethered to an iRNA agent for use in oral delivery. The backbone in each repeating unit of an oligourea peptidomimetic can be extended by one carbon atom in comparison with the natural amino acid. The single carbon atom extension can increase peptide stability and lipophilicity, for example. An oligourea peptide can therefore be advantageous when an iRNA agent is directed for passage through a bacterial cell wall, or when an iRNA agent must traverse the blood-brain barrier, such as for the treatment of a neurological disorder. In one embodiment, a hydrogen bonding unit is conjugated to the oligourea peptide, such as to create an increased affinity with a receptor. For example, an Ant or Tat peptide can be an oligourea conjugate (or an oligothiourea conjugate).
The siRNA peptide conjugates of the invention can be affiliated with, e.g., tethered to, RRMSs occurring at various positions on an iRNA agent. For example, a peptide can be terminally conjugated, on either the sense or the antisense strand, or a peptide can be bisconjugated (one peptide tethered to each end, one conjugated to the sense strand, and one conjugated to the antisense strand). In another option, the peptide can be internally conjugated, such as in the loop of a short hairpin iRNA agent. In yet another option, the peptide can be affiliated with a complex, such as a peptide-carrier complex.
A peptide-carrier complex consists of at least a carrier molecule, which can encapsulate one or more iRNA agents (such as for delivery to a biological system and/or a cell), and a peptide moiety tethered to the outside of the carrier molecule, such as for targeting the carrier complex to a particular tissue or cell type. A carrier complex can carry additional targeting molecules on the exterior of the complex, or fusogenic agents to aid in cell delivery. The one or more iRNA agents encapsulated within the carrier can be conjugated to lipophilic molecules, which can aid in the delivery of the agents to the interior of the carrier.
A carrier molecule or structure can be, for example, a micelle, a liposome (e.g., a cationic liposome), a nanoparticle, a microsphere, or a biodegradable polymer. A peptide moiety can be tethered to the carrier molecule by a variety of linkages, such as a disulfide linkage, an acid labile linkage, a peptide-based linkage, an oxyamino linkage or a hydrazine linkage. For example, a peptide-based linkage can be a GFLG peptide. Certain linkages will have particular advantages, and the advantages (or disadvantages) can be considered depending on the tissue target or intended use. For example, peptide based linkages are stable in the blood stream but are susceptible to enzymatic cleavage in the lysosomes.
Targeting
The iRNA agents of the invention are particularly useful when targeted to the liver. An iRNA agent can be targeted to the liver by incorporation of an RRMS containing a ligand that targets the liver. For example, a liver-targeting agent can be a lipophilic moiety. Preferred lipophilic moieties include lipid, cholesterols, oleyl, retinyl, or cholesteryl residues. Other lipophilic moieties that can function as liver-targeting agents include cholic acid, adamantane acetic acid, 1-pyrene butyric acid, dihydrotestosterone, 1,3-Bis-O(hexadecyl)glycerol, geranyloxyhexyl group, hexadecylglycerol, borneol, menthol, 1,3-propanediol, heptadecyl group, palmitic acid, myristic acid, O3-(oleoyl)lithocholic acid, O3-(oleoyl)cholenic acid, dimethoxytrityl, or phenoxazine.
An iRNA agent can also be targeted to the liver by association with a low-density lipoprotein (LDL), such as lactosylated LDL. Polymeric carriers complexed with sugar residues can also function to target iRNA agents to the liver.
A targeting agent that incorporates a sugar, e.g., galactose and/or analogues thereof, is particularly useful. These agents target, in particular, the parenchymal cells of the liver. For example, a targeting moiety can include more than one or preferably two or three galactose moieties, spaced about 15 angstroms from each other. The targeting moiety can alternatively be lactose (e.g., three lactose moieties), which is glucose coupled to a galactose. The targeting moiety can also be N-Acetyl-Galactosamine, N-Ac-Glucosamine. A mannose or mannose-6-phosphate targeting moiety can be used for macrophage targeting.
Conjugation of an iRNA agent with a serum albumin (SA), such as human serum albumin, can also be used to target the iRNA agent to the liver.
An iRNA agent targeted to the liver by an RRMS targeting moiety described herein can target a gene expressed in the liver. For example, the iRNA agent can target p21(WAF1/DIP1), P27(KIP1), the α-fetoprotein gene, beta-catenin, or c-MET, such as for treating a cancer of the liver. In another embodiment, the iRNA agent can target apoB-100, such as for the treatment of an HDL/LDL cholesterol imbalance; dyslipidemias, e.g., familial combined hyperlipidemia (FCHL), or acquired hyperlipidemia; hypercholesterolemia; statin-resistant hypercholesterolemia; coronary artery disease (CAD); coronary heart disease (CHD); or atherosclerosis. In another embodiment, the iRNA agent can target forkhead homologue in rhabdomyosarcoma (FKHR); glucagon; glucagon receptor; glycogen phosphorylase; PPAR-Gamma Coactivator (PGC-1); Fructose-1,6-bisphosphatase; glucose-6-phosphatase; glucose-6-phosphate translocator; glucokinase inhibitory regulatory protein; or phosphoenolpyruvate carboxykinase (PEPCK), such as to inhibit hepatic glucose production in a mammal, such as a human, such as for the treatment of diabetes. In another embodiment, an iRNA agent targeted to the liver can target Factor V, e.g., the Leiden Factor V allele, such as to reduce the tendency to form a blood clot. An iRNA agent targeted to the liver can include a sequence which targets hepatitis virus (e.g., Hepatitis A, B, C, D, E, F, G, or H). For example, an iRNA agent of the invention can target any one of the nonstructural proteins of HCV: NS3, 4A, 4B, 5A, or 5B. For the treatment of hepatitis B, an iRNA agent can target the protein X (HBx) gene, for example.
Preferred ligands on RRMSs include folic acid, glucose, cholesterol, cholic acid, Vitamin E, Vitamin K, or Vitamin A.
Definitions
The term “halo” refers to any radical of fluorine, chlorine, bromine or iodine.
The term “alkyl” refers to a hydrocarbon chain that may be a straight chain or branched chain, containing the indicated number of carbon atoms. For example, C1-C12 alkyl indicates that the group may have from 1 to 12 (inclusive) carbon atoms in it. The term “haloalkyl” refers to an alkyl in which one or more hydrogen atoms are replaced by halo, and includes alkyl moieties in which all hydrogens have been replaced by halo (e.g., perfluoroalkyl). Alkyl and haloalkyl groups may be optionally inserted with O, N, or S. The terms “aralkyl” refers to an alkyl moiety in which an alkyl hydrogen atom is replaced by an aryl group. Aralkyl includes groups in which more than one hydrogen atom has been replaced by an aryl group. Examples of “aralkyl” include benzyl, 9-fluorenyl, benzhydryl, and trityl groups.
The term “alkenyl” refers to a straight or branched hydrocarbon chain containing 2-8 carbon atoms and characterized in having one or more double bonds. Examples of a typical alkenyl include, but not limited to, allyl, propenyl, 2-butenyl, 3-hexenyl and 3-octenyl groups. The term “alkynyl” refers to a straight or branched hydrocarbon chain containing 2-8 carbon atoms and characterized in having one or more triple bonds. Some examples of a typical alkynyl are ethynyl, 2-propynyl, and 3-methylbutynyl, and propargyl. The sp2 and sp3 carbons may optionally serve as the point of attachment of the alkenyl and alkynyl groups, respectively.
The term “alkoxy” refers to an —O-alkyl radical. The term “aminoalkyl” refers to an alkyl substituted with an aminoThe term “mercapto” refers to an —SH radical. The term “thioalkoxy” refers to an —S-alkyl radical.
The term “alkylene” refers to a divalent alkyl (i.e., —R—), e.g., —CH2—, —CH2CH2—, and —CH2CH2CH2—. The term “alkylenedioxo” refers to a divalent species of the structure —O—R—O—, in which R represents an alkylene.
The term “aryl” refers to an aromatic monocyclic, bicyclic, or tricyclic hydrocarbon ring system, wherein any ring atom capable of substitution can be substituted by a substituent. Examples of aryl moieties include, but are not limited to, phenyl, naphthyl, and anthracenyl.
The term “cycloalkyl” as employed herein includes saturated cyclic, bicyclic, tricyclic, or polycyclic hydrocarbon groups having 3 to 12 carbons, wherein any ring atom capable of substitution can be substituted by a substituent. The cycloalkyl groups herein described may also contain fused rings. Fused rings are rings that share a common carbon-carbon bond. Examples of cycloalkyl moieties include, but are not limited to, cyclohexyl, adamantyl, and norbornyl.
The term “heterocyclyl” refers to a nonaromatic 3-10 membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic ring system having 1-3 heteroatoms if monocyclic, 1-6 heteroatoms if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms selected from O, N, or S (e.g., carbon atoms and 1-3, 1-6, or 1-9 heteroatoms of N, O, or S if monocyclic, bicyclic, or tricyclic, respectively), wherein any ring atom capable of substitution can be substituted by a substituent. The heterocyclyl groups herein described may also contain fused rings. Fused rings are rings that share a common carbon-carbon bond. Examples of heterocyclyl include, but are not limited to tetrahydrofuranyl, tetrahydropyranyl, piperidinyl, morpholino, pyrrolinyl and pyrrolidinyl.
The term “heteroaryl” refers to an aromatic 5-8 membered monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic ring system having 1-3 heteroatoms if monocyclic, 1-6 heteroatoms if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms selected from O, N, or S (e.g., carbon atoms and 1-3, 1-6, or 1-9 heteroatoms of N, O, or S if monocyclic, bicyclic, or tricyclic, respectively), wherein any ring atom capable of substitution can be substituted by a substituent.
The term “oxo” refers to an oxygen atom, which forms a carbonyl when attached to carbon, an N-oxide when attached to nitrogen, and a sulfoxide or sulfone when attached to sulfur.
The term “acyl” refers to an alkylcarbonyl, cycloalkylcarbonyl, arylcarbonyl, heterocyclylcarbonyl, or heteroarylcarbonyl substituent, any of which may be further substituted by substituents.
The term “substituents” refers to a group “substituted” on an alkyl, cycloalkyl, alkenyl, alkynyl, heterocyclyl, heterocycloalkenyl, cycloalkenyl, aryl, or heteroaryl group at any atom of that group. Suitable substituents include, without limitation, alkyl, alkenyl, alkynyl, alkoxy, halo, hydroxy, cyano, nitro, amino, SO3H, sulfate, phosphate, perfluoroalkyl, perfluoroalkoxy, methylenedioxy, ethylenedioxy, carboxyl, oxo, thioxo, imino (alkyl, aryl, aralkyl), S(O)nalkyl (where n is 0-2), S(O)n aryl (where n is 0-2), S(O)n heteroaryl (where n is 0-2), S(O)n heterocyclyl (where n is 0-2), amine (mono-, di-, alkyl, cycloalkyl, aralkyl, heteroaralkyl, and combinations thereof), ester (alkyl, aralkyl, heteroaralkyl), amide (mono-, di-, alkyl, aralkyl, heteroaralkyl, and combinations thereof), sulfonamide (mono-, di-, alkyl, aralkyl, heteroaralkyl, and combinations thereof), unsubstituted aryl, unsubstituted heteroaryl, unsubstituted heterocyclyl, and unsubstituted cycloalkyl. In one aspect, the substituents on a group are independently any one single, or any subset of the aforementioned substituents.
The terms “adeninyl, cytosinyl, guaninyl, thyminyl, and uracilyl” and the like refer to radicals of adenine, cytosine, guanine, thymine, and uracil.
As used herein, an “unusual” nucleobase can include any one of the following:
2-methyladeninyl,
N6-methyladeninyl,
2-methylthio-N6-methyladeninyl,
N6-isopentenyladeninyl,
2-methylthio-N6-isopentenyladeninyl,
N6-(cis-hydroxyisopentenyl)adeninyl,
2-methylthio-N6-(cis-hydroxyisopentenyl)adeninyl,
N6-glycinylcarbamoyladeninyl,
N6-threonylcarbamoyladeninyl,
2-methylthio-N6-threonyl carbamoyladeninyl,
N6-methyl-N6-threonylcarbamoyladeninyl,
N6-hydroxynorvalylcarbamoyladeninyl,
2-methylthio-N6-hydroxynorvalyl carbamoyladeninyl,
N6,N6-dimethyladeninyl,
3-methylcytosinyl,
5-methylcytosinyl,
2-thiocytosinyl,
5-formylcytosinyl,




N4-methylcytosinyl,
5-hydroxymethylcytosinyl,
1-methylguaninyl,
N2-methylguaninyl,
7-methylguaninyl,
N2,N2-dimethylguaninyl,







N2,N2,7-trimethylguaninyl,
1-methylguaninyl,
7-cyano-7-deazaguaninyl,
7-aminomethyl-7-deazaguaninyl,
pseudouracilyl,
dihydrouracilyl,
5-methyluracilyl,
1-methylpseudouracilyl,
2-thiouracilyl,
4-thiouracilyl,
2-thiothyminyl
5-methyl-2-thiouracilyl,
3-(3-amino-3-carboxypropyl)uracilyl,
5-hydroxyuracilyl,
5-methoxyuracilyl,
uracilyl 5-oxyacetic acid,
uracilyl 5-oxyacetic acid methyl ester,
5-(carboxyhydroxymethyl)uracilyl,
5-(carboxyhydroxymethyl)uracilyl methyl ester,
5-methoxycarbonylmethyluracilyl,
5-methoxycarbonylmethyl-2-thiouracilyl,
5-aminomethyl-2-thiouracilyl,
5-methylaminomethyluracilyl,
5-methylaminomethyl-2-thiouracilyl,
5-methylaminomethyl-2-selenouracilyl,
5-carbamoylmethyluracilyl,
5-carboxymethylaminomethyluracilyl,
5-carboxymethylaminomethyl-2-thiouracilyl,
3-methyluracilyl,
1-methyl-3-(3-amino-3-carboxypropyl)pseudouracilyl,
5-carboxymethyluracilyl,
5-methyldihydrouracilyl, or
3-methylpseudouracilyl.
Asymmetrical Modifications
In one aspect, the invention features an iRNA agent which can be asymmetrically modified as described herein.
In addition, the invention includes iRNA agents having asymmetrical modifications and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an architecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates an asymmetrical modification.
iRNA agents of the invention can be asymmetrically modified. An asymmetrically modified iRNA agent is one in which a strand has a modification which is not present on the other strand. An asymmetrical modification is a modification found on one strand but not on the other strand. Any modification, e.g., any modification described herein, can be present as an asymmetrical modification. An asymmetrical modification can confer any of the desired properties associated with a modification, e.g., those properties discussed herein. E.g., an asymmetrical modification can: confer resistance to degradation, an alteration in half life; target the iRNA agent to a particular target, e.g., to a particular tissue; modulate, e.g., increase or decrease, the affinity of a strand for its complement or target sequence; or hinder or promote modification of a terminal moiety, e.g., modification by a kinase or other enzymes involved in the RISC mechanism pathway. The designation of a modification as having one property does not mean that it has no other property, e.g., a modification referred to as one which promotes stabilization might also enhance targeting.
While not wishing to be bound by theory or any particular mechanistic model, it is believed that asymmetrical modification allows an iRNA agent to be optimized in view of the different or “asymmetrical” functions of the sense and antisense strands. For example, both strands can be modified to increase nuclease resistance, however, since some changes can inhibit RISC activity, these changes can be chosen for the sense stand. In addition, since some modifications, e.g., targeting moieties, can add large bulky groups that, e.g., can interfere with the cleavage activity of the RISC complex, such modifications are preferably placed on the sense strand. Thus, targeting moieties, especially bulky ones (e.g. cholesterol), are preferentially added to the sense strand. In one embodiment, an asymmetrical modification in which a phosphate of the backbone is substituted with S, e.g., a phosphorothioate modification, is present in the antisense strand, and a 2′ modification, e.g., 2′ OMe is present in the sense strand. A targeting moiety can be present at either (or both) the 5′ or 3′ end of the sense strand of the iRNA agent. In a preferred example, a P of the backbone is replaced with S in the antisense strand, 2′OMe is present in the sense strand, and a targeting moiety is added to either the 5′ or 3′ end of the sense strand of the iRNA agent.
In a preferred embodiment an asymmetrically modified iRNA agent has a modification on the sense strand which modification is not found on the antisense strand and the antisense strand has a modification which is not found on the sense strand.
Each strand can include one or more asymmetrical modifications. By way of example: one strand can include a first asymmetrical modification which confers a first property on the iRNA agent and the other strand can have a second asymmetrical modification which confers a second property on the iRNA. E.g., one strand, e.g., the sense strand can have a modification which targets the iRNA agent to a tissue, and the other strand, e.g., the antisense strand, has a modification which promotes hybridization with the target gene sequence.
In some embodiments both strands can be modified to optimize the same property, e.g., to increase resistance to nucleolytic degradation, but different modifications are chosen for the sense and the antisense strands, e.g., because the modifications affect other properties as well. E.g., since some changes can affect RISC activity these modifications are chosen for the sense strand.
In an embodiment one strand has an asymmetrical 2′ modification, e.g., a 2′ OMe modification, and the other strand has an asymmetrical modification of the phosphate backbone, e.g., a phosphorothioate modification. So, in one embodiment the antisense strand has an asymmetrical 2′ OMe modification and the sense strand has an asymmetrical phosphorothioate modification (or vice versa). In a particularly preferred embodiment the RNAi agent will have asymmetrical 2′-O alkyl, preferably, 2′-OMe modifications on the sense strand and asymmetrical backbone P modification, preferably a phosphothioate modification in the antisense strand. There can be one or multiple 2′-OMe modifications, e.g., at least 2, 3, 4, 5, or 6, of the subunits of the sense strand can be so modified. There can be one or multiple phosphorothioate modifications, e.g., at least 2, 3, 4, 5, or 6, of the subunits of the antisense strand can be so modified. It is preferable to have an iRNA agent wherein there are multiple 2′-OMe modifications on the sense strand and multiple phosphorothioate modifications on the antisense strand. All of the subunits on one or both strands can be so modified. A particularly preferred embodiment of multiple asymmetric modification on both strands has a duplex region about 20-21, and preferably 19, subunits in length and one or two 3′ overhangs of about 2 subunits in length.
Asymmetrical modifications are useful for promoting resistance to degradation by nucleases, e.g., endonucleases. iRNA agents can include one or more asymmetrical modifications which promote resistance to degradation. In preferred embodiments the modification on the antisense strand is one which will not interfere with silencing of the target, e.g., one which will not interfere with cleavage of the target. Most if not all sites on a strand are vulnerable, to some degree, to degradation by endonucleases. One can determine sites which are relatively vulnerable and insert asymmetrical modifications which inhibit degradation. It is often desirable to provide asymmetrical modification of a UA site in an iRNA agent, and in some cases it is desirable to provide the UA sequence on both strands with asymmetrical modification. Examples of modifications which inhibit endonucleolytic degradation can be found herein. Particularly favored modifications include: 2′ modification, e.g., provision of a 2′ OMe moiety on the U, especially on a sense strand; modification of the backbone, e.g., with the replacement of an 0 with an S, in the phosphate backbone, e.g., the provision of a phosphorothioate modification, on the U or the A or both, especially on an antisense strand; replacement of the U with a C5 amino linker; replacement of the A with a G (sequence changes are preferred to be located on the sense strand and not the antisense strand); and modification of the at the 2′, 6′, 7′, or 8′ position. Preferred embodiments are those in which one or more of these modifications are present on the sense but not the antisense strand, or embodiments where the antisense strand has fewer of such modifications.
Asymmetrical modification can be used to inhibit degradation by exonucleases. Asymmetrical modifications can include those in which only one strand is modified as well as those in which both are modified. In preferred embodiments the modification on the antisense strand is one which will not interfere with silencing of the target, e.g., one which will not interfere with cleavage of the target. Some embodiments will have an asymmetrical modification on the sense strand, e.g., in a 3′ overhang, e.g., at the 3′ terminus, and on the antisense strand, e.g., in a 3′ overhang, e.g., at the 3′ terminus. If the modifications introduce moieties of different size it is preferable that the larger be on the sense strand. If the modifications introduce moieties of different charge it is preferable that the one with greater charge be on the sense strand.
Examples of modifications which inhibit exonucleolytic degradation can be found herein. Particularly favored modifications include: 2′ modification, e.g., provision of a 2′ OMe moiety in a 3′ overhang, e.g., at the 3′ terminus (3′ terminus means at the 3′ atom of the molecule or at the most 3′ moiety, e.g., the most 3′ P or 2′ position, as indicated by the context); modification of the backbone, e.g., with the replacement of a P with an S, e.g., the provision of a phosphorothioate modification, or the use of a methylated P in a 3′ overhang, e.g., at the 3′ terminus; combination of a 2′ modification, e.g., provision of a 2′ 0 Me moiety and modification of the backbone, e.g., with the replacement of a P with an S, e.g., the provision of a phosphorothioate modification, or the use of a methylated P, in a 3′ overhang, e.g., at the 3′ terminus; modification with a 3′ alkyl; modification with an abasic pyrrolidine in a 3′ overhang, e.g., at the 3′ terminus; modification with naproxene, ibuprofen, or other moieties which inhibit degradation at the 3′ terminus. Preferred embodiments are those in which one or more of these modifications are present on the sense but not the antisense strand, or embodiments where the antisense strand has fewer of such modifications.
Modifications, e.g., those described herein, which affect targeting can be provided as asymmetrical modifications. Targeting modifications which can inhibit silencing, e.g., by inhibiting cleavage of a target, can be provided as asymmetrical modifications of the sense strand. A biodistribution altering moiety, e.g., cholesterol, can be provided in one or more, e.g., two, asymmetrical modifications of the sense strand. Targeting modifications which introduce moieties having a relatively large molecular weight, e.g., a molecular weight of more than 400, 500, or 1000 daltons, or which introduce a charged moiety (e.g., having more than one positive charge or one negative charge) can be placed on the sense strand.
Modifications, e.g., those described herein, which modulate, e.g., increase or decrease, the affinity of a strand for its compliment or target, can be provided as asymmetrical modifications. These include: 5 methyl U; 5 methyl C; pseudouridine, Locked nucleic acids, 2 thio U and 2-amino-A. In some embodiments one or more of these is provided on the antisense strand.
iRNA agents have a defined structure, with a sense strand and an antisense strand, and in many cases short single strand overhangs, e.g., of 2 or 3 nucleotides are present at one or both 3′ ends. Asymmetrical modification can be used to optimize the activity of such a structure, e.g., by being placed selectively within the iRNA. E.g., the end region of the iRNA agent defined by the 5′ end of the sense strand and the 3′ end of the antisense strand is important for function. This region can include the terminal 2, 3, or 4 paired nucleotides and any 3′ overhang. In preferred embodiments asymmetrical modifications which result in one or more of the following are used: modifications of the 5′ end of the sense strand which inhibit kinase activation of the sense strand, including, e.g., attachments of conjugates which target the molecule or the use modifications which protect against 5′ exonucleolytic degradation; or modifications of either strand, but preferably the sense strand, which enhance binding between the sense and antisense strand and thereby promote a “tight” structure at this end of the molecule.
The end region of the iRNA agent defined by the 3′ end of the sense strand and the 5′ end of the antisense strand is also important for function. This region can include the terminal 2, 3, or 4 paired nucleotides and any 3′ overhang. Preferred embodiments include asymmetrical modifications of either strand, but preferably the sense strand, which decrease binding between the sense and antisense strand and thereby promote an “open” structure at this end of the molecule. Such modifications include placing conjugates which target the molecule or modifications which promote nuclease resistance on the sense strand in this region. Modification of the antisense strand which inhibit kinase activation are avoided in preferred embodiments.
Exemplary modifications for asymmetrical placement in the sense strand include the following:
(a) backbone modifications, e.g., modification of a backbone P, including replacement of P with S, or P substituted with alkyl or allyl, e.g., Me, and dithioates (S—P═S); these modifications can be used to promote nuclease resistance;
(b) 2′-O alkyl, e.g., 2′-OMe, 3′-O alkyl, e.g., 3′-OMe (at terminal and/or internal positions); these modifications can be used to promote nuclease resistance or to enhance binding of the sense to the antisense strand, the 3′ modifications can be used at the 5′ end of the sense strand to avoid sense strand activation by RISC;
(c) 2′-5′ linkages (with 2′-H, 2′-OH and 2′-OMe and with P═O or P═S) these modifications can be used to promote nuclease resistance or to inhibit binding of the sense to the antisense strand, or can be used at the 5′ end of the sense strand to avoid sense strand activation by RISC;
(d) L sugars (e.g., L ribose, L-arabinose with 2′-H, 2′-OH and 2′-OMe); these modifications can be used to promote nuclease resistance or to inhibit binding of the sense to the antisense strand, or can be used at the 5′ end of the sense strand to avoid sense strand activation by RISC;
(e) modified sugars (e.g., locked nucleic acids (LNA's), hexose nucleic acids (RNA's) and cyclohexene nucleic acids (CeNA's)); these modifications can be used to promote nuclease resistance or to inhibit binding of the sense to the antisense strand, or can be used at the 5′ end of the sense strand to avoid sense strand activation by RISC;
(f) nucleobase modifications (e.g., C-5 modified pyrimidines, N-2 modified purines, N-7 modified purines, N-6 modified purines), these modifications can be used to promote nuclease resistance or to enhance binding of the sense to the antisense strand;
(g) cationic groups and Zwitterionic groups (preferably at a terminus), these modifications can be used to promote nuclease resistance;
(h) conjugate groups (preferably at terminal positions), e,g., naproxen, biotin, cholesterol, ibuprofen, folic acid, peptides, and carbohydrates; these modifications can be used to promote nuclease resistance or to target the molecule, or can be used at the 5′ end of the sense strand to avoid sense strand activation by RISC.
Exemplary modifications for asymmetrical placement in the antisense strand include the following:
(a) backbone modifications, e.g., modification of a backbone P, including replacement of P with S, or P substituted with alkyl or allyl, e.g., Me, and dithioates (S—P═S);
(b) 2′-O alkyl, e.g., 2′-OMe, (at terminal positions);
(c) 2′-5′ linkages (with 2′-H, 2′-OH and 2′-OMe) e.g., terminal at the 3′ end); e.g., with P═O or P═S preferably at the 3′-end, these modifications are preferably excluded from the 5′ end region as they may interfere with RISC enzyme activity such as kinase activity;
(d) L sugars (e.g, L ribose, L-arabinose with 2′-H, 2′-OH and 2′-OMe); e.g., terminal at the 3′ end; e.g., with P═O or P═S preferably at the 3′-end, these modifications are preferably excluded from the 5′ end region as they may interfere with kinase activity;
(e) modified sugars (e.g., LNA's, HNA's and CeNA's); these modifications are preferably excluded from the 5′ end region as they may contribute to unwanted enhancements of paring between the sense and antisense strands, it is often preferred to have a “loose” structure in the 5′ region, additionally, they may interfere with kinase activity;
(f) nucleobase modifications (e.g., C-5 modified pyrimidines, N-2 modified purines, N-7 modified purines, N-6 modified purines);
(g) cationic groups and Zwitterionic groups (preferably at a terminus);
conjugate groups (preferably at terminal positions), e,g., naproxen, biotin, cholesterol, ibuprofen, folic acid, peptides, and carbohydrates, but bulky groups or generally groups which inhibit RISC activity should are less preferred.
The 5′-OH of the antisense strand should be kept free to promote activity. In some preferred embodiments modifications that promote nuclease resistance should be included at the 3′ end, particularly in the 3′ overhang.
In another aspect, the invention features a method of optimizing, e.g., stabilizing, an iRNA agent. The method includes selecting a sequence having activity, introducing one or more asymmetric modifications into the sequence, wherein the introduction of the asymmetric modification optimizes a property of the iRNA agent but does not result in a decrease in activity.
The decrease in activity can be less than a preselected level of decrease. In preferred embodiments decrease in activity means a decrease of less than 5, 10, 20, 40, or 50% activity, as compared with an otherwise similar iRNA lacking the introduced modification. Activity can, e.g., be measured in vivo, or in vitro, with a result in either being sufficient to demonstrate the required maintenance of activity.
The optimized property can be any property described herein and in particular the properties discussed in the section on asymmetrical modifications provided herein. The modification can be any asymmetrical modification, e.g., an asymmetric modification described in the section on asymmetrical modifications described herein. Particularly preferred asymmetric modifications are 2′-O alkyl modifications, e.g., 2′-OMe modifications, particularly in the sense sequence, and modifications of a backbone O, particularly phosphorothioate modifications, in the antisense sequence.
In a preferred embodiment a sense sequence is selected and provided with an asymmetrical modification, while in other embodiments an antisense sequence is selected and provided with an asymmetrical modification. In some embodiments both sense and antisense sequences are selected and each provided with one or more asymmetrical modifications.
Multiple asymmetric modifications can be introduced into either or both of the sense and antisense sequence. A sequence can have at least 2, 4, 6, 8, or more modifications and all or substantially all of the monomers of a sequence can be modified.







TABLE 2







Some examples of Asymmetric Modification








Strand I
Strand II





Nuclease Resistance (e.g. 2′-OMe)
Biodistribution (e.g., P═S)


Biodistribution conjugate
Protein Binding Functionality


(e.g. Lipophile)
(e.g. Naproxen)


Tissue Distribution Functionality
Cell Targeting Functionality


(e.g. Carbohydrates)
(e.g. Folate for cancer cells)


Tissue Distribution Functionality
Fusogenic Functionality


(e.g. Liver Cell Targeting
(e.g. Polyethylene imines)


Carbohydrates)


Cancer Cell Targeting
Fusogenic Functionality


(e.g. RGD peptides and imines)
(e.g. peptides)


Nuclease Resistance (e.g. 2′-OMe)
Increase in binding Affinity



(5-Me—C, 5-Me—U, 2-thio-U,



2-amino-A, G-clamp, LNA)


Tissue Distribution Functionality
RISC activity improving



Functionality


Helical conformation changing
Tissue Distribution Functionality


Functionalities
(P═S; lipophile, carbohydrates)









This table shows examples having strand I with a selected modification and strand II with a selected modification.
Z-X-Y Architecture
In one aspect, the invention features an iRNA agent which can have a Z-X-Y architecture or structure such as those described herein and those described in copending, co-owned U.S. Provisional Application Ser. No. 60/510,246, filed on Oct. 9, 2003, which is hereby incorporated by reference, and in copending, co-owned U.S. Provisional Application Ser. No. 60/510,318, filed on Oct. 10, 2003, which is hereby incorporated by reference.
In addition, the invention includes iRNA agents having a Z-X-Y structure and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates a Z-X-Y architecture.
The invention provides an iRNA agent having a first segment, the Z region, a second segment, the X region, and optionally a third region, the Y region:

Z-X-Y.

It may be desirable to modify subunits in one or both of Z and/or Y on one hand and X on the other hand. In some cases they will have the same modification or the same class of modification but it will more often be the case that the modifications made in Z and/or Y will differ from those made in X.
The Z region typically includes a terminus of an iRNA agent. The length of the Z region can vary, but will typically be from 2-14, more preferably 2-10, subunits in length. It typically is single stranded, i.e., it will not base pair with bases of another strand, though it may in some embodiments self associate, e.g., to form a loop structure. Such structures can be formed by the end of a strand looping back and forming an intrastrand duplex. E.g., 2, 3, 4, 5 or more intra-strand bases pairs can form, having a looped out or connecting region, typically of 2 or more subunits which do not pair. This can occur at one or both ends of a strand. A typical embodiment of a Z region is a single strand overhang, e.g., an over hang of the length described elsewhere herein. The Z region can thus be or include a 3′ or 5′ terminal single strand. It can be sense or antisense strand but if it is antisense it is preferred that it is a 3-overhang. Typical inter-subunit bonds in the Z region include: P═O; P═S; S—P═S; P—NR2; and P—BR2. Chiral P═X, where X is S, N, or B) inter-subunit bonds can also be present. (These inter-subunit bonds are discussed in more detail elsewhere herein.) Other preferred Z region subunit modifications (also discussed elsewhere herein) can include: 3′-OR, 3′SR, 2′-OMe, 3′-OMe, and 2′OH modifications and moieties; alpha configuration bases; and 2′ arabino modifications.
The X region will in most cases be duplexed, in the case of a single strand iRNA agent, with a corresponding region of the single strand, or in the case of a double stranded iRNA agent, with the corresponding region of the other strand. The length of the X region can vary but will typically be between 10-45 and more preferably between 15 and 35 subunits. Particularly preferred region X's will include 17, 18, 19, 29, 21, 22, 23, 24, or 25 nucleotide pairs, though other suitable lengths are described elsewhere herein and can be used. Typical X region subunits include 2′-OH subunits. In typical embodiments phosphate inter-subunit bonds are preferred while phosphorothioate or non-phosphate bonds are absent. Other modifications preferred in the X region include: modifications to improve binding, e.g., nucleobase modifications; cationic nucleobase modifications; and C-5 modified pyrimidines, e.g., allylamines. Some embodiments have 4 or more consecutive 2′OH subunits. While the use of phosphorothioate is sometimes non preferred they can be used if they connect less than 4 consecutive 2′OH subunits.
The Y region will generally conform to the parameters set out for the Z regions. However, the X and Z regions need not be the same, different types and numbers of modifications can be present, and infact, one will usually be a 3′ overhang and one will usually be a 5′ overhang.
In a preferred embodiment the iRNA agent will have a Y and/or Z region each having ribonucleosides in which the 2′-OH is substituted, e.g., with 2′-OMe or other alkyl; and an X region that includes at least four consecutive ribonucleoside subunits in which the 2′-OH remains unsubstituted.
The subunit linkages (the linkages between subunits) of an iRNA agent can be modified, e.g., to promote resistance to degradation. Numerous examples of such modifications are disclosed herein, one example of which is the phosphorothioate linkage. These modifications can be provided between the subunits of any of the regions, Y, X, and Z. However, it is preferred that their occurrences minimized and in particular it is preferred that consecutive modified linkages be avoided.
In a preferred embodiment the iRNA agent will have a Y and Z region each having ribonucleosides in which the 2′-OH is substituted, e.g., with 2′-OMe; and an X region that includes at least four consecutive subunits, e.g., ribonucleoside subunits in which the 2′-OH remains unsubstituted.
As mentioned above, the subunit linkages of an iRNA agent can be modified, e.g., to promote resistance to degradation. These modifications can be provided between the subunits of any of the regions, Y, X, and Z. However, it is preferred that they are minimized and in particular it is preferred that consecutive modified linkages be avoided.
Thus, in a preferred embodiment, not all of the subunit linkages of the iRNA agent are modified and more preferably the maximum number of consecutive subunits linked by other than a phosphodiester bond will be 2, 3, or 4. Particularly preferred iRNA agents will not have four or more consecutive subunits, e.g., 2′-hydroxyl ribonucleoside subunits, in which each subunits is joined by modified linkages—i.e. linkages that have been modified to stabilize them from degradation as compared to the phosphodiester linkages that naturally occur in RNA and DNA.
It is particularly preferred to minimize the occurrence in region X. Thus, in preferred embodiments each of the nucleoside subunit linkages in X will be phosphodiester linkages, or if subunit linkages in region X are modified, such modifications will be minimized. E.g., although the Y and/or Z regions can include inter subunit linkages which have been stabilized against degradation, such modifications will be minimized in the X region, and in particular consecutive modifications will be minimized. Thus, in preferred embodiments the maximum number of consecutive subunits linked by other than a phosphodiester bond will be 2, 3, or 4. Particularly preferred X regions will not have four or more consecutive subunits, e.g., 2′-hydroxyl ribonucleoside subunits, in which each subunits is joined by modified linkages—i.e. linkages that have been modified to stabilize them from degradation as compared to the phosphodiester linkages that naturally occur in RNA and DNA.
In a preferred embodiment Y and/or Z will be free of phosphorothioate linkages, though either or both may contain other modifications, e.g., other modifications of the subunit linkages.
In a preferred embodiment region X, or in some cases, the entire iRNA agent, has no more than 3 or no more than 4 subunits having identical 2′ moieties.
In a preferred embodiment region X, or in some cases, the entire iRNA agent, has no more than 3 or no more than 4 subunits having identical subunit linkages.
In a preferred embodiment one or more phosphorothioate linkages (or other modifications of the subunit linkage) are present in Y and/or Z, but such modified linkages do not connect two adjacent subunits, e.g., nucleosides, having a 2′ modification, e.g., a 2′-O-alkyl moiety. E.g., any adjacent 2′-O-alkyl moieties in the Y and/or Z, are connected by a linkage other than a phosphorothioate linkage.
In a preferred embodiment each of Y and/or Z independently has only one phosphorothioate linkage between adjacent subunits, e.g., nucleosides, having a 2′ modification, e.g., 2′-O-alkyl nucleosides. If there is a second set of adjacent subunits, e.g., nucleosides, having a 2′ modification, e.g., 2′-O-alkyl nucleosides, in Y and/or Z that second set is connected by a linkage other than a phosphorothioate linkage, e.g., a modified linkage other than a phosphorothioate linkage.
In a preferred embodiment each of Y and/or Z independently has more than one phosphorothioate linkage connecting adjacent pairs of subunits, e.g., nucleosides, having a 2′ modification, e.g., 2′-O-alkyl nucleosides, but at least one pair of adjacent subunits, e.g., nucleosides, having a 2′ modification, e.g., 2′-O-alkyl nucleosides, are be connected by a linkage other than a phosphorothioate linkage, e.g., a modified linkage other than a phosphorothioate linkage.
In a preferred embodiment one of the above recited limitation on adjacent subunits in Y and or Z is combined with a limitation on the subunits in X. E.g., one or more phosphorothioate linkages (or other modifications of the subunit linkage) are present in Y and/or Z, but such modified linkages do not connect two adjacent subunits, e.g., nucleosides, having a 2′ modification, e.g., a 2′-O-alkyl moiety. E.g., any adjacent 2′-O-alkyl moieties in the Y and/or Z, are connected by a linkage other than a phosphorothioate linkage. In addition, the X region has no more than 3 or no more than 4 identical subunits, e.g., subunits having identical 2′ moieties or the X region has no more than 3 or no more than 4 subunits having identical subunit linkages.
A Y and/or Z region can include at least one, and preferably 2, 3 or 4 of a modification disclosed herein. Such modifications can be chosen, independently, from any modification described herein, e.g., from nuclease resistant subunits, subunits with modified bases, subunits with modified intersubunit linkages, subunits with modified sugars, and subunits linked to another moiety, e.g., a targeting moiety. In a preferred embodiment more than 1 of such subunits can be present but in some embodiments it is preferred that no more than 1, 2, 3, or 4 of such modifications occur, or occur consecutively. In a preferred embodiment the frequency of the modification will differ between Y and/or Z and X, e.g., the modification will be present one of Y and/or Z or X and absent in the other.
An X region can include at least one, and preferably 2, 3 or 4 of a modification disclosed herein. Such modifications can be chosen, independently, from any modification described herein, e.g., from nuclease resistant subunits, subunits with modified bases, subunits with modified intersubunit linkages, subunits with modified sugars, and subunits linked to another moiety, e.g., a targeting moiety. In a preferred embodiment more than 1 of such subunits can b present but in some embodiments it is preferred that no more than 1, 2, 3, or 4 of such modifications occur, or occur consecutively.
An RRMS (described elsewhere herein) can be introduced at one or more points in one or both strands of a double-stranded iRNA agent. An RRMS can be placed in a Y and/or Z region, at or near (within 1, 2, or 3 positions) of the 3′ or 5′ end of the sense strand or at near (within 2 or 3 positions of) the 3′ end of the antisense strand. In some embodiments it is preferred to not have an RRMS at or near (within 1, 2, or 3 positions of) the 5′ end of the antisense strand. An RRMS can be positioned in the X region, and will preferably be positioned in the sense strand or in an area of the antisense strand not critical for antisense binding to the target.
Differential Modification of Terminal Duplex Stability
In one aspect, the invention features an iRNA agent which can have differential modification of terminal duplex stability (DMTDS).
In addition, the invention includes iRNA agents having DMTDS and another element described herein. E.g., the invention includes an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having an architecture or structure described herein, an iRNA associated with an amphipathic delivery agent described herein, an iRNA associated with a drug delivery module described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, which also incorporates DMTDS.
iRNA agents can be optimized by increasing the propensity of the duplex to disassociate or melt (decreasing the free energy of duplex association), in the region of the 5′ end of the antisense strand duplex. This can be accomplished, e.g., by the inclusion of subunits which increase the propensity of the duplex to disassociate or melt in the region of the 5′ end of the antisense strand. It can also be accomplished by the attachment of a ligand that increases the propensity of the duplex to disassociate of melt in the region of the 5′ end. While not wishing to be bound by theory, the effect may be due to promoting the effect of an enzyme such as helicase, for example, promoting the effect of the enzyme in the proximity of the 5′ end of the antisense strand.
The inventors have also discovered that iRNA agents can be optimized by decreasing the propensity of the duplex to disassociate or melt (increasing the free energy of duplex association), in the region of the 3′ end of the antisense strand duplex. This can be accomplished, e.g., by the inclusion of subunits which decrease the propensity of the duplex to disassociate or melt in the region of the 3′ end of the antisense strand. It can also be accomplished by the attachment of ligand that decreases the propensity of the duplex to disassociate of melt in the region of the 5′ end.
Modifications which increase the tendency of the 5′ end of the duplex to dissociate can be used alone or in combination with other modifications described herein, e.g., with modifications which decrease the tendency of the 3′ end of the duplex to dissociate. Likewise, modifications which decrease the tendency of the 3′ end of the duplex to dissociate can be used alone or in combination with other modifications described herein, e.g., with modifications which increase the tendency of the 5′ end of the duplex to dissociate.
Decreasing the Stability of the AS 5′ End of the Duplex
Subunit pairs can be ranked on the basis of their propensity to promote dissociation or melting (e.g., on the free energy of association or dissociation of a particular pairing, the simplest approach is to examine the pairs on an individual pair basis, though next neighbor or similar analysis can also be used). In terms of promoting dissociation:
A:U is preferred over G:C;
G:U is preferred over G:C;
I:C is preferred over G:C (I=inosine);
mismatches, e.g., non-canonical or other than canonical pairings (as described elsewhere herein) are preferred over canonical (A:T, A:U, G:C) pairings;
pairings which include a universal base are preferred over canonical pairings.
A typical ds iRNA agent can be diagrammed as follows:
S 5′ R1N1N2N3N4N5[N] N−5N−4N−3N−2N−1R2 3′
AS 3′ R3N1N2N3N4N5[N] N−5N−4N−3 N−2 N−1R4 5′
S:AS P1P2P3P4P5[N] P−5P−4P−3P−2P−1 5′
S indicates the sense strand; AS indicates antisense strand; R1 indicates an optional (and nonpreferred) 5′ sense strand overhang; R2 indicates an optional (though preferred) 3′ sense overhang; R3 indicates an optional (though preferred) 3′ antisense sense overhang; R4 indicates an optional (and nonpreferred) 5′ antisense overhang; N indicates subunits; [N] indicates that additional subunit pairs may be present; and PX, indicates a paring of sense Nx and antisense Nx. Overhangs are not shown in the P diagram. In some embodiments a 3′ AS overhang corresponds to region Z, the duplex region corresponds to region X, and the 3′ S strand overhang corresponds to region Y, as described elsewhere herein. (The diagram is not meant to imply maximum or minimum lengths, on which guidance is provided elsewhere herein.)
It is preferred that pairings which decrease the propensity to form a duplex are used at 1 or more of the positions in the duplex at the 5′ end of the AS strand. The terminal pair (the most 5′ pair in terms of the AS strand) is designated as P−1, and the subsequent pairing positions (going in the 3′ direction in terms of the AS strand) in the duplex are designated, P−2, P−3, P−4, P−5, and so on. The preferred region in which to modify to modulate duplex formation is at P−5 through P−1, more preferably P−4 through P−1, more preferably P−3 through P−1. Modification at P−1, is particularly preferred, alone or with modification(s) other position(s), e.g., any of the positions just identified. It is preferred that at least 1, and more preferably 2, 3, 4, or 5 of the pairs of one of the recited regions be chosen independently from the group of:
A:U
G:U
I:C
mismatched pairs, e.g., non-canonical or other than canonical pairings or pairings which include a universal base.
In preferred embodiments the change in subunit needed to achieve a pairing which promotes dissociation will be made in the sense strand, though in some embodiments the change will be made in the antisense strand.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are pairs which promote disociation.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are A:U.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are G:U.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are I:C.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are mismatched pairs, e.g., non-canonical or other than canonical pairings pairings.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are pairings which include a universal base.
Increasing the Stability of the AS 3′ End of the Duplex
Subunit pairs can be ranked on the basis of their propensity to promote stability and inhibit dissociation or melting (e.g., on the free energy of association or dissociation of a particular pairing, the simplest approach is to examine the pairs on an individual pair basis, though next neighbor or similar analysis can also be used). In terms of promoting duplex stability:
G:C is preferred over A:U
Watson-Crick matches (A:T, A:U, G:C) are preferred over non-canonical or other than canonical pairings
analogs that increase stability are preferred over Watson-Crick matches (A:T, A:U, G:C)
2-amino-A:U is preferred over A:U
2-thio U or 5 Me-thio-U:A are preferred over U:A
G-clamp (an analog of C having 4 hydrogen bonds):G is preferred over C:G
guanadinium-G-clamp:G is preferred over C:G
psuedo uridine:A is preferred over U:A
sugar modifications, e.g., 2′ modifications, e.g., 2′F, ENA, or LNA, which enhance binding are preferred over non-modified moieties and can be present on one or both strands to enhance stability of the duplex. It is preferred that pairings which increase the propensity to form a duplex are used at 1 or more of the positions in the duplex at the 3′ end of the AS strand. The terminal pair (the most 3′ pair in terms of the AS strand) is designated as P1, and the subsequent pairing positions (going in the 5′ direction in terms of the AS strand) in the duplex are designated, P2, P3, P4, P5, and so on. The preferred region in which to modify to modulate duplex formation is at P5 through P1, more preferably P4 through P1, more preferably P3 through P1. Modification at P1, is particularly preferred, alone or with mdification(s) at other position(s), e.g., any of the positions just identified. It is preferred that at least 1, and more preferably 2, 3, 4, or 5 of the pairs of the recited regions be chosen independently from the group of:
G:C
a pair having an analog that increases stability over Watson-Crick matches (A:T, A:U, G:C)
2-amino-A:U
2-thio U or 5 Me-thio-U:A
G-clamp (an analog of C having 4 hydrogen bonds):G
guanadinium-G-clamp: G
psuedo uridine:A
a pair in which one or both subunits has a sugar modification, e.g., a 2′ modification, e.g., 2′F, ENA, or LNA, which enhance binding.
In a preferred embodiment the at least 2, or 3, of the pairs in P−1, through P−4, are pairs which promote duplex stability.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are G:C.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are a pair having an analog that increases stability over Watson-Crick matches.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are 2-amino-A:U.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are 2-thio U or 5 Me-thio-U:A.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are G-clamp:G.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are guanidinium-G-clamp: G.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are psuedo uridine:A.
In a preferred embodiment the at least 2, or 3, of the pairs in P1, through P4, are a pair in which one or both subunits has a sugar modification, e.g., a 2′ modification, e.g., 2′F, ENA, or LNA, which enhances binding.
G-clamps and guanidinium G-clamps are discussed in the following references: Holmes and Gait, “The Synthesis of 2′-O-Methyl G-Clamp Containing Oligonucleotides and Their Inhibition of the HIV-1 Tat-TAR Interaction,” Nucleosides, Nucleotides & Nucleic Acids, 22:1259-1262, 2003; Holmes et al., “Steric inhibition of human immunodeficiency virus type-1 Tat-dependent trans-activation in vitro and in cells by oligonucleotides containing 2′-O-methyl G-clamp ribonucleoside analogues,” Nucleic Acids Research, 31:2759-2768, 2003; Wilds, et al., “Structural basis for recognition of guanosine by a synthetic tricyclic cytosine analogue: Guanidinium G-clamp,” Helvetica Chimica Acta, 86:966-978, 2003; Rajeev, et al., “High-Affinity Peptide Nucleic Acid Oligomers Containing Tricyclic Cytosine Analogues,” Organic Letters, 4:4395-4398, 2002; Ausin, et al., “Synthesis of Amino- and Guanidino-G-Clamp PNA Monomers,” Organic Letters, 4:4073-4075, 2002; Maier et al., “Nuclease resistance of oligonucleotides containing the tricyclic cytosine analogues phenoxazine and 9-(2-aminoethoxy)-phenoxazine (“G-clamp”) and origins of their nuclease resistance properties,” Biochemistry, 41:1323-7, 2002; Flanagan, et al., “A cytosine analog that confers enhanced potency to antisense oligonucleotides,” Proceedings Of The National Academy Of Sciences Of The United States Of America, 96:3513-8, 1999.
Simultaneously Decreasing the Stability of the AS 5′ End of the Duplex and Increasing the Stability of the AS 3′ End of the Duplex
As is discussed above, an iRNA agent can be modified to both decrease the stability of the AS 5′ end of the duplex and increase the stability of the AS 3′ end of the duplex. This can be effected by combining one or more of the stability decreasing modifications in the AS 5′ end of the duplex with one or more of the stability increasing modifications in the AS 3′ end of the duplex. Accordingly a preferred embodiment includes modification in P−5 through P−1, more preferably P−4 through P−1 and more preferably P−3 through P−1. Modification at P−1, is particularly preferred, alone or with other position, e.g., the positions just identified. It is preferred that at least 1, and more preferably 2, 3, 4, or 5 of the pairs of one of the recited regions of the AS 5′ end of the duplex region be chosen independently from the group of:
A:U
G:U
I:C
mismatched pairs, e.g., non-canonical or other than canonical pairings which include a universal base; and
a modification in P5 through P1, more preferably P4 through P1 and more preferably P3 through P1. Modification at P1, is particularly preferred, alone or with other position, e.g., the positions just identified. It is preferred that at least 1, and more preferably 2, 3, 4, or 5 of the pairs of one of the recited regions of the AS 3′ end of the duplex region be chosen independently from the group of:
G:C
a pair having an analog that increases stability over Watson-Crick matches (A:T, A:U, G:C)
2-amino-A:U
2-thio U or 5 Me-thio-U:A
G-clamp (an analog of C having 4 hydrogen bonds):G
guanadinium-G-clamp: G
psuedo uridine:A
a pair in which one or both subunits has a sugar modification, e.g., a 2′ modification, e.g., 2′F, ENA, or LNA, which enhance binding.
The invention also includes methods of selecting and making iRNA agents having DMTDS. E.g., when screening a target sequence for candidate sequences for use as iRNA agents one can select sequences having a DMTDS property described herein or one which can be modified, preferably with as few changes as possible, especially to the
AS strand, to provide a desired level of DMTDS.
The invention also includes, providing a candidate iRNA agent sequence, and modifying at least one P in P−5 through P−1 and/or at least one P in P5 through P1 to provide a DMTDS iRNA agent.
DMTDS iRNA agents can be used in any method described herein, e.g., to silence any gene disclosed herein, to treat any disorder described herein, in any formulation described herein, and generally in and/or with the methods and compositions described elsewhere herein. DMTDS iRNA agents can incorporate other modifications described herein, e.g., the attachment of targeting agents or the inclusion of modifications which enhance stability, e.g., the inclusion of nuclease resistant monomers or the inclusion of single strand overhangs (e.g., 3′ AS overhangs and/or 3′ S strand overhangs) which self associate to form intrastrand duplex structure.
Preferably these iRNA agents will have an architecture described herein.
Other Embodiments
In vivo Delivery
An iRNA agent can be linked, e.g., noncovalently linked to a polymer for the efficient delivery of the iRNA agent to a subject, e.g., a mammal, such as a human. The iRNA agent can, for example, be complexed with cyclodextrin. Cyclodextrins have been used as delivery vehicles of therapeutic compounds. Cyclodextrins can form inclusion complexes with drugs that are able to fit into the hydrophobic cavity of the cyclodextrin. In other examples, cyclodextrins form non-covalent associations with other biologically active molecules such as oligonucleotides and derivatives thereof. The use of cyclodextrins creates a water-soluble drug delivery complex, that can be modified with targeting or other functional groups. Cyclodextrin cellular delivery system for oligonucleotides described in U.S. Pat. No. 5,691,316, which is hereby incorporated by reference, are suitable for use in methods of the invention. In this system, an oligonucleotide is noncovalently complexed with a cyclodextrin, or the oligonucleotide is covalently bound to adamantine which in turn is noncovalently associated with a cyclodextrin.
The delivery molecule can include a linear cyclodextrin copolymer or a linear oxidized cyclodextrin copolymer having at least one ligand bound to the cyclodextrin copolymer. Delivery systems, as described in U.S. Pat. No. 6,509,323, herein incorporated by reference, are suitable for use in methods of the invention. An iRNA agent can be bound to the linear cyclodextrin copolymer and/or a linear oxidized cyclodextrin copolymer. Either or both of the cyclodextrin or oxidized cyclodextrin copolymers can be crosslinked to another polymer and/or bound to a ligand.
A composition for iRNA delivery can employ an “inclusion complex,” a molecular compound having the characteristic structure of an adduct. In this structure, the “host molecule” spatially encloses at least part of another compound in the delivery vehicle. The enclosed compound (the “guest molecule”) is situated in the cavity of the host molecule without affecting the framework structure of the host. A “host” is preferably cyclodextrin, but can be any of the molecules suggested in U.S. Patent Publ. 2003/0008818, herein incorporated by reference.
Cyclodextrins can interact with a variety of ionic and molecular species, and the resulting inclusion compounds belong to the class of “host-guest” complexes. Within the host-guest relationship, the binding sites of the host and guest molecules should be complementary in the stereoelectronic sense. A composition of the invention can contain at least one polymer and at least one therapeutic agent, generally in the form of a particulate composite of the polymer and therapeutic agent, e.g., the iRNA agent. The iRNA agent can contain one or more complexing agents. At least one polymer of the particulate composite can interact with the complexing agent in a host-guest or a guest-host interaction to form an inclusion complex between the polymer and the complexing agent. The polymer and, more particularly, the complexing agent can be used to introduce functionality into the composition. For example, at least one polymer of the particulate composite has host functionality and forms an inclusion complex with a complexing agent having guest functionality. Alternatively, at least one polymer of the particulate composite has guest functionality and forms an inclusion complex with a complexing agent having host functionality. A polymer of the particulate composite can also contain both host and guest functionalities and form inclusion complexes with guest complexing agents and host complexing agents. A polymer with functionality can, for example, facilitate cell targeting and/or cell contact (e.g., targeting or contact to a liver cell), intercellular trafficking, and/or cell entry and release.
Upon forming the particulate composite, the iRNA agent may or may not retain its biological or therapeutic activity. Upon release from the therapeutic composition, specifically, from the polymer of the particulate composite, the activity of the iRNA agent is restored. Accordingly, the particulate composite advantageously affords the iRNA agent protection against loss of activity due to, for example, degradation and offers enhanced bioavailability. Thus, a composition may be used to provide stability, particularly storage or solution stability, to an iRNA agent or any active chemical compound. The iRNA agent may be further modified with a ligand prior to or after particulate composite or therapeutic composition formation. The ligand can provide further functionality. For example, the ligand can be a targeting moiety.
Physiological Effects
The iRNA agents described herein can be designed such that determining therapeutic toxicity is made easier by the complementarity of the iRNA agent with both a human and a non-human animal sequence. By these methods, an iRNA agent can consist of a sequence that is fully complementary to a nucleic acid sequence from a human and a nucleic acid sequence from at least one non-human animal, e.g., a non-human mammal, such as a rodent, ruminant or primate. For example, the non-human mammal can be a mouse, rat, dog, pig, goat, sheep, cow, monkey, Pan paniscus, Pan troglodytes, Macaca mulatto, or Cynomolgus monkey. The sequence of the iRNA agent could be complementary to sequences within homologous genes, e.g., oncogenes or tumor suppressor genes, of the non-human mammal and the human. By determining the toxicity of the iRNA agent in the non-human mammal, one can extrapolate the toxicity of the iRNA agent in a human. For a more strenuous toxicity test, the iRNA agent can be complementary to a human and more than one, e.g., two or three or more, non-human animals.
The methods described herein can be used to correlate any physiological effect of an iRNA agent on a human, e.g., any unwanted effect, such as a toxic effect, or any positive, or desired effect.
Delivery Module
In one aspect, the invention features a drug delivery conjugate or module, such as those described herein and those described in copending, co-owned U.S. Provisional Application Ser. No. 60/454,265, filed on Mar. 12, 2003, which is hereby incorporated by reference.
In addition, the invention includes iRNA agents described herein, e.g., a palindromic iRNA agent, an iRNA agent having a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having a chemical modification described herein, e.g., a modification which enhances resistance to degradation, an iRNA agent having an architecture or structure described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, combined with, associated with, and delivered by such a drug delivery conjugate or module.
The iRNA agents can be complexed to a delivery agent that features a modular complex. The complex can include a carrier agent linked to one or more of (preferably two or more, more preferably all three of): (a) a condensing agent (e.g., an agent capable of attracting, e.g., binding, a nucleic acid, e.g., through ionic or electrostatic interactions); (b) a fusogenic agent (e.g., an agent capable of fusing and/or being transported through a cell membrane, e.g., an endosome membrane); and (c) a targeting group, e.g., a cell or tissue targeting agent, e.g., a lectin, glycoprotein, lipid or protein, e.g., an antibody, that binds to a specified cell type such as a cancer cell, endothelial cell or bone cell.
An iRNA agent, e.g., iRNA agent or sRNA agent described herein, can be linked, e.g., coupled or bound, to the modular complex. The iRNA agent can interact with the condensing agent of the complex, and the complex can be used to deliver an iRNA agent to a cell, e.g., in vitro or in vivo. For example, the complex can be used to deliver an iRNA agent to a subject in need thereof, e.g., to deliver an iRNA agent to a subject having a disorder, e.g., a disorder described herein, such as a disease or disorder of the liver.
The fusogenic agent and the condensing agent can be different agents or the one and the same agent. For example, a polyamino chain, e.g., polyethyleneimine (PEI), can be the fusogenic and/or the condensing agent.
The delivery agent can be a modular complex. For example, the complex can include a carrier agent linked to one or more of (preferably two or more, more preferably all three of):
(a) a condensing agent (e.g., an agent capable of attracting, e.g., binding, a nucleic acid, e.g., through ionic interaction),
(b) a fusogenic agent (e.g., an agent capable of fusing and/or being transported through a cell membrane, e.g., an endosome membrane), and
(c) a targeting group, e.g., a cell or tissue targeting agent, e.g., a lectin, glycoprotein, lipid or protein, e.g., an antibody, that binds to a specified cell type such as a cancer cell, endothelial cell, bone cell. A targeting group can be a thyrotropin, melanotropin, lectin, glycoprotein, surfactant protein A, Mucin carbohydrate, multivalent lactose, multivalent galactose, N-acetyl-galactosamine, N-acetyl-gulucosamine multivalent mannose, multivalent fucose, glycosylated polyaminoacids, multivalent galactose, transferrin, bisphosphonate, polyglutamate, polyaspartate, a lipid, cholesterol, a steroid, bile acid, folate, vitamin B12, biotin, Neproxin, or an RGD peptide or RGD peptide mimetic.
Carrier Agents
The carrier agent of a modular complex described herein can be a substrate for attachment of one or more of: a condensing agent, a fusogenic agent, and a targeting group. The carrier agent would preferably lack an endogenous enzymatic activity. The agent would preferably be a biological molecule, preferably a macromolecule. Polymeric biological carriers are preferred. It would also be preferred that the carrier molecule be biodegradable.
The carrier agent can be a naturally occurring substance, such as a protein (e.g., human serum albumin (HSA), low-density lipoprotein (LDL), or globulin); carbohydrate (e.g., a dextran, pullulan, chitin, chitosan, inulin, cyclodextrin or hyaluronic acid); or lipid. The carrier molecule can also be a recombinant or synthetic molecule, such as a synthetic polymer, e.g., a synthetic polyamino acid. Examples of polyamino acids include polylysine (PLL), poly L-aspartic acid, poly L-glutamic acid, styrene-maleic acid anhydride copolymer, poly(L-lactide-co-glycolied) copolymer, divinyl ether-maleic anhydride copolymer, N-(2-hydroxypropyl)methacrylamide copolymer (HMPA), polyethylene glycol (PEG), polyvinyl alcohol (PVA), polyurethane, poly(2-ethylacryllic acid), N-isopropylacrylamide polymers, or polyphosphazine. Other useful carrier molecules can be identified by routine methods.
A carrier agent can be characterized by one or more of: (a) is at least 1 Da in size; (b) has at least 5 charged groups, preferably between 5 and 5000 charged groups; (c) is present in the complex at a ratio of at least 1:1 carrier agent to fusogenic agent; (d) is present in the complex at a ratio of at least 1:1 carrier agent to condensing agent; (e) is present in the complex at a ratio of at least 1:1 carrier agent to targeting agent.
Fusogenic Agents
A fusogenic agent of a modular complex described herein can be an agent that is responsive to, e.g., changes charge depending on, the pH environment. Upon encountering the pH of an endosome, it can cause a physical change, e.g., a change in osmotic properties which disrupts or increases the permeability of the endosome membrane. Preferably, the fusogenic agent changes charge, e.g., becomes protonated, at pH lower than physiological range. For example, the fusogenic agent can become protonated at pH 4.5-6.5. The fusogenic agent can serve to release the iRNA agent into the cytoplasm of a cell after the complex is taken up, e.g., via endocytosis, by the cell, thereby increasing the cellular concentration of the iRNA agent in the cell.
In one embodiment, the fusogenic agent can have a moiety, e.g., an amino group, which, when exposed to a specified pH range, will undergo a change, e.g., in charge, e.g., protonation. The change in charge of the fusogenic agent can trigger a change, e.g., an osmotic change, in a vesicle, e.g., an endocytic vesicle, e.g., an endosome. For example, the fusogenic agent, upon being exposed to the pH environment of an endosome, will cause a solubility or osmotic change substantial enough to increase the porosity of (preferably, to rupture) the endosomal membrane.
The fusogenic agent can be a polymer, preferably a polyamino chain, e.g., polyethyleneimine (PEI). The PEI can be linear, branched, synthetic or natural. The PEI can be, e.g., alkyl substituted PEI, or lipid substituted PEI.
In other embodiments, the fusogenic agent can be polyhistidine, polyimidazole, polypyridine, polypropyleneimine, mellitin, or a polyacetal substance, e.g., a cationic polyacetal. In some embodiment, the fusogenic agent can have an alpha helical structure. The fusogenic agent can be a membrane disruptive agent, e.g., mellittin.
A fusogenic agent can have one or more of the following characteristics: (a) is at least 1Da in size; (b) has at least 10 charged groups, preferably between 10 and 5000 charged groups, more preferably between 50 and 1000 charged groups; (c) is present in the complex at a ratio of at least 1:1 fusogenic agent to carrier agent; (d) is present in the complex at a ratio of at least 1:1 fusogenic agent to condensing agent; (e) is present in the complex at a ratio of at least 1:1 fusogenic agent to targeting agent.
Other suitable fusogenic agents can be tested and identified by a skilled artisan. The ability of a compound to respond to, e.g., change charge depending on, the pH environment can be tested by routine methods, e.g., in a cellular assay. For example, a test compound is combined or contacted with a cell, and the cell is allowed to take up the test compound, e.g., by endocytosis. An endosome preparation can then be made from the contacted cells and the endosome preparation compared to an endosome preparation from control cells. A change, e.g., a decrease, in the endosome fraction from the contacted cell vs. the control cell indicates that the test compound can function as a fusogenic agent. Alternatively, the contacted cell and control cell can be evaluated, e.g., by microscopy, e.g., by light or electron microscopy, to determine a difference in endosome population in the cells. The test compound can be labeled. In another type of assay, a modular complex described herein is constructed using one or more test or putative fusogenic agents. The modular complex can be constructed using a labeled nucleic acid instead of the iRNA. The ability of the fusogenic agent to respond to, e.g., change charge depending on, the pH environment, once the modular complex is taken up by the cell, can be evaluated, e.g., by preparation of an endosome preparation, or by microscopy techniques, as described above. A two-step assay can also be performed, wherein a first assay evaluates the ability of a test compound alone to respond to, e.g., change charge depending on, the pH environment; and a second assay evaluates the ability of a modular complex that includes the test compound to respond to, e.g., change charge depending on, the pH environment.
Condensing Agent
The condensing agent of a modular complex described herein can interact with (e.g., attracts, holds, or binds to) an iRNA agent and act to (a) condense, e.g., reduce the size or charge of the iRNA agent and/or (b) protect the iRNA agent, e.g., protect the iRNA agent against degradation. The condensing agent can include a moiety, e.g., a charged moiety, that can interact with a nucleic acid, e.g., an iRNA agent, e.g., by ionic interactions. The condensing agent would preferably be a charged polymer, e.g., a polycationic chain. The condensing agent can be a polylysine (PLL), spermine, spermidine, polyamine, pseudopeptide-polyamine, peptidomimetic polyamine, dendrimer polyamine, arginine, amidine, protamine, cationic lipid, cationic porphyrin, quarternary salt of a polyamine, or an alpha helical peptide.
A condensing agent can have the following characteristics: (a) at least 1Da in size; (b) has at least 2 charged groups, preferably between 2 and 100 charged groups; (c) is present in the complex at a ratio of at least 1:1 condensing agent to carrier agent; (d) is present in the complex at a ratio of at least 1:1 condensing agent to fusogenic agent; (e) is present in the complex at a ratio of at least 1:1 condensing agent to targeting agent.
Other suitable condensing agents can be tested and identified by a skilled artisan, e.g., by evaluating the ability of a test agent to interact with a nucleic acid, e.g., an iRNA agent. The ability of a test agent to interact with a nucleic acid, e.g., an iRNA agent, e.g., to condense or protect the iRNA agent, can be evaluated by routine techniques. In one assay, a test agent is contacted with a nucleic acid, and the size and/or charge of the contacted nucleic acid is evaluated by a technique suitable to detect changes in molecular mass and/or charge. Such techniques include non-denaturing gel electrophoresis, immunological methods, e.g., immunoprecipitation, gel filtration, ionic interaction chromatography, and the like. A test agent is identified as a condensing agent if it changes the mass and/or charge (preferably both) of the contacted nucleic acid, compared to a control. A two-step assay can also be performed, wherein a first assay evaluates the ability of a test compound alone to interact with, e.g., bind to, e.g., condense the charge and/or mass of, a nucleic cid; and a second assay evaluates the ability of a modular complex that includes the test compound to interact with, e.g., bind to, e.g., condense the charge and/or mass of, a nucleic acid.
Amphipathic Delivery Agents
In one aspect, the invention features an amphipathic delivery conjugate or module, such as those described herein and those described in copending, co-owned U.S. Provisional Application Ser. No. 60/455,050, filed on Mar. 13, 2003, which is hereby incorporated by reference.
In addition, the invention include an iRNA agent described herein, e.g., a palindromic iRNA agent, an iRNA agent hying a non canonical pairing, an iRNA agent which targets a gene described herein, e.g., a gene active in the liver, an iRNA agent having a chemical modification described herein, e.g., a modification which enhances resistance to degradation, an iRNA agent having an architecture or structure described herein, an iRNA agent administered as described herein, or an iRNA agent formulated as described herein, combined with, associated with, and delivered by such an amphipathic delivery conjugate.
An amphipathic molecule is a molecule having a hydrophobic and a hydrophilic region. Such molecules can interact with (e.g., penetrate or disrupt) lipids, e.g., a lipid bylayer of a cell. As such, they can serve as delivery agent for an associated (e.g., bound) iRNA (e.g., an iRNA or sRNA described herein). A preferred amphipathic molecule to be used in the compositions described herein (e.g., the amphipathic iRNA constructs descriebd herein) is a polymer. The polymer may have a secondary structure, e.g., a repeating secondary structure.
One example of an amphipathic polymer is an amphipathic polypeptide, e.g., a polypeptide having a secondary structure such that the polypeptide has a hydrophilic and a hybrophobic face. The design of amphipathic peptide structures (e.g., alpha-helical polypeptides) is routine to one of skill in the art. For example, the following references provide guidance: Grell et al. (2001) Protein design and folding: template trapping of self-assembled helical bundles J Pept Sci 7(3):146-51; Chen et al. (2002) Determination of stereochemistry stability coefficients of amino acid side-chains in an amphipathic alpha-helix Pept Res 59(1):18-33; Iwata et al. (1994) Design and synthesis of amphipathic 3(10)-helical peptides and their interactions with phospholipid bilayers and ion channel formation J Biol Chem 269(7):4928-33; Cornut et al. (1994) The amphipathic alpha-helix concept. Application to the de novo design of ideally amphipathic Leu, Lys peptides with hemolytic activity higher than that of melittin FEBS Lett 349(1):29-33; Negrete et al. (1998) Deciphering the structural code for proteins: helical propensities in domain classes and statistical multiresidue information in alpha-helices. Protein Sci 7(6):1368-79.
Another example of an amphipathic polymer is a polymer made up of two or more amphipathic subunits, e.g., two or more subunits containing cyclic moieties (e.g., a cyclic moiety having one or more hydrophilic groups and one or more hydrophobic groups). For example, the subunit may contain a steroid, e.g., cholic acid; or a aromatic moiety. Such moieties preferably can exhibit atropisomerism, such that they can form opposing hydrophobic and hydrophilic faces when in a polymer structure.
The ability of a putative amphipathic molecule to interact with a lipid membrane, e.g., a cell membrane, can be tested by routine methods, e.g., in a cell free or cellular assay. For example, a test compound is combined or contacted with a synthetic lipid bilayer, a cellular membrane fraction, or a cell, and the test compound is evaluated for its ability to interact with, penetrate or disrupt the lipid bilayer, cell membrane or cell. The test compound can labeled in order to detect the interaction with the lipid bilayer, cell membrane or cell. In another type of assay, the test compound is linked to a reporter molecule or an iRNA agent (e.g., an iRNA or sRNA described herein) and the ability of the reporter molecule or iRNA agent to penetrate the lipid bilayer, cell membrane or cell is evaluated. A two-step assay can also be performed, wherein a first assay evaluates the ability of a test compound alone to interact with a lipid bilayer, cell membrane or cell; and a second assay evaluates the ability of a construct (e.g., a construct described herein) that includes the test compound and a reporter or iRNA agent to interact with a lipid bilayer, cell membrane or cell.
An amphipathic polymer useful in the compositions described herein has at least 2, preferably at least 5, more preferably at least 10, 25, 50, 100, 200, 500, 1000, 2000, 50000 or more subunits (e.g., amino acids or cyclic subunits). A single amphipathic polymer can be linked to one or more, e.g., 2, 3, 5, 10 or more iRNA agents (e.g., iRNA or sRNA agents described herein). In some embodiments, an amphipathic polymer can contain both amino acid and cyclic subunits, e.g., aromatic subunits.
The invention features a composition that includes an iRNA agent (e.g., an iRNA or sRNA described herein) in association with an amphipathic molecule. Such compositions may be referred to herein as “amphipathic iRNA constructs.” Such compositions and constructs are useful in the delivery or targeting of iRNA agents, e.g., delivery or targeting of iRNA agents to a cell. While not wanting to be bound by theory, such compositions and constructs can increase the porosity of, e.g., can penetrate or disrupt, a lipid (e.g., a lipid bilayer of a cell), e.g., to allow entry of the iRNA agent into a cell.
In one aspect, the invention relates to a composition comprising an iRNA agent (e.g., an iRNA or sRNA agent described herein) linked to an amphipathic molecule. The iRNA agent and the amphipathic molecule may be held in continuous contact with one another by either covalent or noncovalent linkages.
The amphipathic molecule of the composition or construct is preferably other than a phospholipid, e.g., other than a micelle, membrane or membrane fragment.
The amphipathic molecule of the composition or construct is preferably a polymer. The polymer may include two or more amphipathic subunits. One or more hydrophilic groups and one or more hydrophobic groups may be present on the polymer. The polymer may have a repeating secondary structure as well as a first face and a second face. The distribution of the hydrophilic groups and the hydrophobic groups along the repeating secondary structure can be such that one face of the polymer is a hydrophilic face and the other face of the polymer is a hydrophobic face.
The amphipathic molecule can be a polypeptide, e.g., a polypeptide comprising an α-helical conformation as its secondary structure.
In one embodiment, the amphipathic polymer includes one or more subunits containing one or more cyclic moiety (e.g., a cyclic moiety having one or more hydrophilic groups and/or one or more hydrophobic groups). In one embodiment, the polymer is a polymer of cyclic moieties such that the moieties have alternating hydrophobic and hydrophilic groups. For example, the subunit may contain a steroid, e.g., cholic acid. In another example, the subunit may contain an aromatic moiety. The aromatic moiety may be one that can exhibit atropisomerism, e.g., a 2,2′-bis(substituted)-1-1′-binaphthyl or a 2,2′-bis(substituted) biphenyl. A subunit may include an aromatic moiety of Formula (M):




The invention features a composition that includes an iRNA agent (e.g., an iRNA or sRNA described herein) in association with an amphipathic molecule. Such compositions may be referred to herein as “amphipathic iRNA constructs.” Such compositions and constructs are useful in the delivery or targeting of iRNA agents, e.g., delivery or targeting of iRNA agents to a cell. While not wanting to be bound by theory, such compositions and constructs can increase the porosity of, e.g., can penetrate or disrupt, a lipid (e.g., a lipid bilayer of a cell), e.g., to allow entry of the iRNA agent into a cell.
In one aspect, the invention relates to a composition comprising an iRNA agent (e.g., an iRNA or sRNA agent described herein) linked to an amphipathic molecule. The iRNA agent and the amphipathic molecule may be held in continuous contact with one another by either covalent or noncovalent linkages.
The amphipathic molecule of the composition or construct is preferably other than a phospholipid, e.g., other than a micelle, membrane or membrane fragment.
The amphipathic molecule of the composition or construct is preferably a polymer. The polymer may include two or more amphipathic subunits. One or more hydrophilic groups and one or more hydrophobic groups may be present on the polymer. The polymer may have a repeating secondary structure as well as a first face and a second face. The distribution of the hydrophilic groups and the hydrophobic groups along the repeating secondary structure can be such that one face of the polymer is a hydrophilic face and the other face of the polymer is a hydrophobic face.
The amphipathic molecule can be a polypeptide, e.g., a polypeptide comprising an α-helical conformation as its secondary structure.
In one embodiment, the amphipathic polymer includes one or more subunits containing one or more cyclic moiety (e.g., a cyclic moiety having one or more hydrophilic groups and/or one or more hydrophobic groups). In one embodiment, the polymer is a polymer of cyclic moieties such that the moieties have alternating hydrophobic and hydrophilic groups. For example, the subunit may contain a steroid, e.g., cholic acid. In another example, the subunit may contain an aromatic moiety. The aromatic moiety may be one that can exhibit atropisomerism, e.g., a 2,2′-bis(substituted)-1-1′-binaphthyl or a 2,2′-bis(substituted) biphenyl. A subunit may include an aromatic moiety of Formula (M):




Referring to Formula M, R1 is C1-C100 alkyl optionally substituted with aryl, alkenyl, alkynyl, alkoxy or halo and/or optionally inserted with O, S, alkenyl or alkynyl; C1-C100 perfluoroalkyl; or OR5.
R2 is hydroxy; nitro; sulfate; phosphate; phosphate ester; sulfonic acid; OR6; or C1-C100 alkyl optionally substituted with hydroxy, halo, nitro, aryl or alkyl sulfinyl, aryl or alkyl sulfonyl, sulfate, sulfonic acid, phosphate, phosphate ester, substituted or unsubstituted aryl, carboxyl, carboxylate, amino carbonyl, or alkoxycarbonyl, and/or optionally inserted with O, NH, S, S(O), SO2, alkenyl, or alkynyl.
R3 is hydrogen, or when taken together with R4 froms a fused phenyl ring.
R4 is hydrogen, or when taken together with R3 froms a fused phenyl ring.
R5 is C1-C100 alkyl optionally substituted with aryl, alkenyl, alkynyl, alkoxy or halo and/or optionally inserted with O, S, alkenyl or alkynyl; or C1-C100 perfluoroalkyl; and R6 is C1-C100 alkyl optionally substituted with hydroxy, halo, nitro, aryl or alkyl sulfinyl, aryl or alkyl sulfonyl, sulfate, sulfonic acid, phosphate, phosphate ester, substituted or unsubstituted aryl, carboxyl, carboxylate, amino carbonyl, or alkoxycarbonyl, and/or optionally inserted with O, NH, S, S(O), SO2, alkenyl, or alkynyl.
Increasing Cellular Uptake of dsRNAs
A method of the invention that can include the administration of an iRNA agent and a drug that affects the uptake of the iRNA agent into the cell. The drug can be administered before, after, or at the same time that the iRNA agent is administered. The drug can be covalently linked to the iRNA agent. The drug can be, for example, a lipopolysaccharide, an activator of p38 MAP kinase, or an activator of NF-κB. The drug can have a transient effect on the cell.
The drug can increase the uptake of the iRNA agent into the cell, for example, by disrupting the cell's cytoskeleton, e.g., by disrupting the cell's microtubules, microfilaments, and/or intermediate filaments. The drug can be, for example, taxon, vincristine, vinblastine, cytochalasin, nocodazole, japlakinolide, latrunculin A, phalloidin, swinholide A, indanocine, or myoservin.
The drug can also increase the uptake of the iRNA agent into the cell by activating an inflammatory response, for example. Exemplary drug's that would have such an effect include tumor necrosis factor alpha (TNFalpha), interleukin-1 beta, or gamma interferon.
iRNA Conjugates
An iRNA agent can be coupled, e.g., covalently coupled, to a second agent. For example, an iRNA agent used to treat a particular disorder can be coupled to a second therapeutic agent, e.g., an agent other than the iRNA agent. The second therapeutic agent can be one which is directed to the treatment of the same disorder. For example, in the case of an iRNA used to treat a disorder characterized by unwanted cell proliferation, e.g., cancer, the iRNA agent can be coupled to a second agent which has an anti-cancer effect. For example, it can be coupled to an agent which stimulates the immune system, e.g., a CpG motif, or more generally an agent that activates a toll-like receptor and/or increases the production of gamma interferon.
iRNA Production
An iRNA can be produced, e.g., in bulk, by a variety of methods. Exemplary methods include: organic synthesis and RNA cleavage, e.g., in vitro cleavage.
Organic Synthesis
An iRNA can be made by separately synthesizing each respective strand of a double-stranded RNA molecule. The component strands can then be annealed.
A large bioreactor, e.g., the OligoPilot II from Pharmacia Biotec AB (Uppsala Sweden), can be used to produce a large amount of a particular RNA strand for a given iRNA. The OligoPilotII reactor can efficiently couple a nucleotide using only a 1.5 molar excess of a phosphoramidite nucleotide. To make an RNA strand, ribonucleotides amidites are used. Standard cycles of monomer addition can be used to synthesize the 21 to 23 nucleotide strand for the iRNA. Typically, the two complementary strands are produced separately and then annealed, e.g., after release from the solid support and deprotection.
Organic synthesis can be used to produce a discrete iRNA species. The complementary of the species to a particular target gene can be precisely specified. For example, the species may be complementary to a region that includes a polymorphism, e.g., a single nucleotide polymorphism. Further the location of the polymorphism can be precisely defined. In some embodiments, the polymorphism is located in an internal region, e.g., at least 4, 5, 7, or 9 nucleotides from one or both of the termini.
dsRNA Cleavage
iRNAs can also be made by cleaving a larger ds iRNA. The cleavage can be mediated in vitro or in vivo. For example, to produce iRNAs by cleavage in vitro, the following method can be used:
In vitro transcription. dsRNA is produced by transcribing a nucleic acid (DNA) segment in both directions. For example, the HiScribeTM RNAi transcription kit (New England Biolabs) provides a vector and a method for producing a dsRNA for a nucleic acid segment that is cloned into the vector at a position flanked on either side by a T7 promoter. Separate templates are generated for T7 transcription of the two complementary strands for the dsRNA. The templates are transcribed in vitro by addition of T7 RNA polymerase and dsRNA is produced. Similar methods using PCR and/or other RNA polymerases (e.g., T3 or SP6 polymerase) can also be used. In one embodiment, RNA generated by this method is carefully purified to remove endotoxins that may contaminate preparations of the recombinant enzymes.
In vitro cleavage. dsRNA is cleaved in vitro into iRNAs, for example, using a Dicer or comparable RNAse III-based activity. For example, the dsRNA can be incubated in an in vitro extract from Drosophila or using purified components, e.g. a purified RNAse or RISC complex (RNA-induced silencing complex). See, e.g., Ketting et al. Genes Dev 2001 Oct. 15; 15(20):2654-9. and Hammond Science 2001 Aug. 10; 293(5532):1146-50.
dsRNA cleavage generally produces a plurality of iRNA species, each being a particular 21 to 23 nt fragment of a source dsRNA molecule. For example, iRNAs that include sequences complementary to overlapping regions and adjacent regions of a source dsRNA molecule may be present.
Regardless of the method of synthesis, the iRNA preparation can be prepared in a solution (e.g., an aqueous and/or organic solution) that is appropriate for formulation. For example, the iRNA preparation can be precipitated and redissolved in pure double-distilled water, and lyophilized. The dried iRNA can then be resuspended in a solution appropriate for the intended formulation process.
Synthesis of modified and nucleotide surrogate iRNA agents is discussed below.
Formulation
The iRNA agents described herein can be formulated for administration to a subject
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention.
A formulated iRNA composition can assume a variety of states. In some examples, the composition is at least partially crystalline, uniformly crystalline, and/or anhydrous (e.g., less than 80, 50, 30, 20, or 10% water). In another example, the iRNA is in an aqueous phase, e.g., in a solution that includes water.
The aqueous phase or the crystalline compositions can, e.g., be incorporated into a delivery vehicle, e.g., a liposome (particularly for the aqueous phase) or a particle (e.g., a microparticle as can be appropriate for a crystalline composition). Generally, the iRNA composition is formulated in a manner that is compatible with the intended method of administration (see, below).
In particular embodiments, the composition is prepared by at least one of the following methods: spray drying, lyophilization, vacuum drying, evaporation, fluid bed drying, or a combination of these techniques; or sonication with a lipid, freeze-drying, condensation and other self-assembly.
A iRNA preparation can be formulated in combination with another agent, e.g., another therapeutic agent or an agent that stabilizes a iRNA, e.g., a protein that complexes with iRNA to form an iRNP. Still other agents include chelators, e.g., EDTA (e.g., to remove divalent cations such as Mg2+), salts, RNAse inhibitors (e.g., a broad specificity RNAse inhibitor such as RNAsin) and so forth.
In one embodiment, the iRNA preparation includes another iRNA agent, e.g., a second iRNA that can mediated RNAi with respect to a second gene, or with respect to the same gene. Still other preparation can include at least 3, 5, ten, twenty, fifty, or a hundred or more different iRNA species. Such iRNAs can mediated RNAi with respect to a similar number of different genes.
In one embodiment, the iRNA preparation includes at least a second therapeutic agent (e.g., an agent other than an RNA or a DNA). For example, a iRNA composition for the treatment of a viral disease, e.g. HIV, might include a known antiviral agent (e.g., a protease inhibitor or reverse transcriptase inhibitor). In another example, a iRNA composition for the treatment of a cancer might further comprise a chemotherapeutic agent.
Exemplary formulations are discussed below:
Liposomes
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA s agents, and such practice is within the invention. An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) preparation can be formulated for delivery in a membranous molecular assembly, e.g., a liposome or a micelle. As used herein, the term “liposome” refers to a vesicle composed of amphiphilic lipids arranged in at least one bilayer, e.g., one bilayer or a plurality of bilayers. Liposomes include unilamellar and multilamellar vesicles that have a membrane formed from a lipophilic material and an aqueous interior. The aqueous portion contains the iRNA composition. The lipophilic material isolates the aqueous interior from an aqueous exterior, which typically does not include the iRNA composition, although in some examples, it may. Liposomes are useful for the transfer and delivery of active ingredients to the site of action. Because the liposomal membrane is structurally similar to biological membranes, when liposomes are applied to a tissue, the liposomal bilayer fuses with bilayer of the cellular membranes. As the merging of the liposome and cell progresses, the internal aqueous contents that include the iRNA are delivered into the cell where the iRNA can specifically bind to a target RNA and can mediate RNAi. In some cases the liposomes are also specifically targeted, e.g., to direct the iRNA to particular cell types.
A liposome containing a iRNA can be prepared by a variety of methods.
In one example, the lipid component of a liposome is dissolved in a detergent so that micelles are formed with the lipid component. For example, the lipid component can be an amphipathic cationic lipid or lipid conjugate. The detergent can have a high critical micelle concentration and may be nonionic. Exemplary detergents include cholate, CHAPS, octylglucoside, deoxycholate, and lauroyl sarcosine. The iRNA preparation is then added to the micelles that include the lipid component. The cationic groups on the lipid interact with the iRNA and condense around the iRNA to form a liposome. After condensation, the detergent is removed, e.g., by dialysis, to yield a liposomal preparation of iRNA.
If necessary a carrier compound that assists in condensation can be added during the condensation reaction, e.g., by controlled addition. For example, the carrier compound can be a polymer other than a nucleic acid (e.g., spermine or spermidine). pH can also adjusted to favor condensation.
Further description of methods for producing stable polynucleotide delivery vehicles, which incorporate a polynucleotide/cationic lipid complex as structural components of the delivery vehicle, are described in, e.g., WO 96/37194. Liposome formation can also include one or more aspects of exemplary methods described in Felgner, P. L. et al., Proc. Natl. Acad. Sci., USA 8:7413-7417, 1987; U.S. Pat. Nos. 4,897,355; 5,171,678; Bangham, et al. M. Mol. Biol. 23:238, 1965; Olson, et al. Biochim. Biophys. Acta 557:9, 1979; Szoka, et al. Proc. Natl. Acad. Sci. 75: 4194, 1978; Mayhew, et al. Biochim. Biophys. Acta 775:169, 1984; Kim, et al. Biochim. Biophys. Acta 728:339, 1983; and Fukunaga, et al. Endocrinol. 115:757, 1984. Commonly used techniques for preparing lipid aggregates of appropriate size for use as delivery vehicles include sonication and freeze-thaw plus extrusion (see, e.g., Mayer, et al. Biochim. Biophys. Acta 858:161, 1986). Microfluidization can be used when consistently small (50 to 200 nm) and relatively uniform aggregates are desired (Mayhew, et al. Biochim. Biophys. Acta 775:169, 1984). These methods are readily adapted to packaging iRNA preparations into liposomes.
Liposomes that are pH-sensitive or negatively-charged, entrap nucleic acid molecules rather than complex with them. Since both the nucleic acid molecules and the lipid are similarly charged, repulsion rather than complex formation occurs. Nevertheless, some nucleic acid molecules are entrapped within the aqueous interior of these liposomes. pH-sensitive liposomes have been used to deliver DNA encoding the thymidine kinase gene to cell monolayers in culture. Expression of the exogenous gene was detected in the target cells (Zhou et al., Journal of Controlled Release, 19, (1992) 269-274).
One major type of liposomal composition includes phospholipids other than naturally-derived phosphatidylcholine. Neutral liposome compositions, for example, can be formed from dimyristoyl phosphatidylcholine (DMPC) or dipalmitoyl phosphatidylcholine (DPPC). Anionic liposome compositions generally are formed from dimyristoyl phosphatidylglycerol, while anionic fusogenic liposomes are formed primarily from dioleoyl phosphatidylethanolamine (DOPE). Another type of liposomal composition is formed from phosphatidylcholine (PC) such as, for example, soybean PC, and egg PC. Another type is formed from mixtures of phospholipid and/or phosphatidylcholine and/or cholesterol.
Examples of other methods to introduce liposomes into cells in vitro and in vivo include U.S. Pat. Nos. 5,283,185; 5,171,678; WO 94/00569; WO 93/24640; WO 91/16024; Feigner, J. Biol. Chem. 269:2550, 1994; Nabel, Proc. Natl. Acad. Sci. 90:11307, 1993; Nabel, Human Gene Ther. 3:649, 1992; Gershon, Biochem. 32:7143, 1993; and Strauss EMBO J. 11:417, 1992.
In one embodiment, cationic liposomes are used. Cationic liposomes possess the advantage of being able to fuse to the cell membrane. Non-cationic liposomes, although not able to fuse as efficiently with the plasma membrane, are taken up by macrophages in vivo and can be used to deliver iRNAs to macrophages.
Further advantages of liposomes include: liposomes obtained from natural phospholipids are biocompatible and biodegradable; liposomes can incorporate a wide range of water and lipid soluble drugs; liposomes can protect encapsulated iRNAs in their internal compartments from metabolism and degradation (Rosoff, in “Pharmaceutical Dosage Forms,” Lieberman, Rieger and Banker (Eds.), 1988, volume 1, p. 245). Important considerations in the preparation of liposome formulations are the lipid surface charge, vesicle size and the aqueous volume of the liposomes.
A positively charged synthetic cationic lipid, N-[1-(2,3-dioleyloxy)propyl]-N,N,N-trimethylammonium chloride (DOTMA) can be used to form small liposomes that interact spontaneously with nucleic acid to form lipid-nucleic acid complexes which are capable of fusing with the negatively charged lipids of the cell membranes of tissue culture cells, resulting in delivery of iRNA (see, e.g., Feigner, P. L. et al., Proc. Natl. Acad. Sci., USA 8:7413-7417, 1987 and U.S. Pat. No. 4,897,355 for a description of DOTMA and its use with DNA).
A DOTMA analogue, 1,2-bis(oleoyloxy)-3-(trimethylammonia)propane (DOTAP) can be used in combination with a phospholipid to form DNA-complexing vesicles. LipofectinTM Bethesda Research Laboratories, Gaithersburg, Md.) is an effective agent for the delivery of highly anionic nucleic acids into living tissue culture cells that comprise positively charged DOTMA liposomes which interact spontaneously with negatively charged polynucleotides to form complexes. When enough positively charged liposomes are used, the net charge on the resulting complexes is also positive. Positively charged complexes prepared in this way spontaneously attach to negatively charged cell surfaces, fuse with the plasma membrane, and efficiently deliver functional nucleic acids into, for example, tissue culture cells. Another commercially available cationic lipid, 1,2-bis(oleoyloxy)-3,3-(trimethylammonia)propane (“DOTAP”) (Boehringer Mannheim, Indianapolis, Ind.) differs from DOTMA in that the oleoyl moieties are linked by ester, rather than ether linkages.
Other reported cationic lipid compounds include those that have been conjugated to a variety of moieties including, for example, carboxyspermine which has been conjugated to one of two types of lipids and includes compounds such as 5-carboxyspermylglycine dioctaoleoylamide (“DOGS”) (TransfectamTM, Promega, Madison, Wis.) and dipalmitoylphosphatidylethanolamine 5-carboxyspermyl-amide (“DPPES”) (see, e.g., U.S. Pat. No. 5,171,678).
Another cationic lipid conjugate includes derivatization of the lipid with cholesterol (“DC-Chol”) which has been formulated into liposomes in combination with DOPE (See, Gao, X. and Huang, L., Biochim. Biophys. Res. Commun. 179:280, 1991). Lipopolylysine, made by conjugating polylysine to DOPE, has been reported to be effective for transfection in the presence of serum (Zhou, X. et al., Biochim. Biophys. Acta 1065:8, 1991). For certain cell lines, these liposomes containing conjugated cationic lipids, are said to exhibit lower toxicity and provide more efficient transfection than the DOTMA-containing compositions. Other commercially available cationic lipid products include DMRIE and DMRIE-HP (Vical, La Jolla, Calif.) and Lipofectamine (DOSPA) (Life Technology, Inc., Gaithersburg, Md.). Other cationic lipids suitable for the delivery of oligonucleotides are described in WO 98/39359 and WO 96/37194.
Liposomal formulations are particularly suited for topical administration, liposomes present several advantages over other formulations. Such advantages include reduced side effects related to high systemic absorption of the administered drug, increased accumulation of the administered drug at the desired target, and the ability to administer iRNA, into the skin. In some implementations, liposomes are used for delivering iRNA to epidermal cells and also to enhance the penetration of iRNA into dermal tissues, e.g., into skin. For example, the liposomes can be applied topically. Topical delivery of drugs formulated as liposomes to the skin has been documented (see, e.g., Weiner et al., Journal of Drug Targeting, 1992, vol. 2, 405-410 and du Plessis et al., Antiviral Research, 18, 1992, 259-265; Mannino, R. J. and Fould-Fogerite, S., Biotechniques 6:682-690, 1988; Itani, T. et al. Gene 56:267-276. 1987; Nicolau, C. et al. Meth. Enz. 149:157-176, 1987; Straubinger, R. M. and Papahadjopoulos, D. Meth. Enz. 101:512-527, 1983; Wang, C. Y. and Huang, L., Proc. Natl. Acad. Sci. USA 84:7851-7855, 1987).
Non-ionic liposomal systems have also been examined to determine their utility in the delivery of drugs to the skin, in particular systems comprising non-ionic surfactant and cholesterol. Non-ionic liposomal formulations comprising Novasome I (glyceryl dilaurate/cholesterol/polyoxyethylene-10-stearyl ether) and Novasome II (glyceryl distearate/cholesterol/polyoxyethylene-10-stearyl ether) were used to deliver a drug into the dermis of mouse skin. Such formulations with iRNA are useful for treating a dermatological disorder.
Liposomes that include iRNA can be made highly deformable. Such deformability can enable the liposomes to penetrate through pore that are smaller than the average radius of the liposome. For example, transfersomes are a type of deformable liposomes. Transferosomes can be made by adding surface edge activators, usually surfactants, to a standard liposomal composition. Transfersomes that include iRNA can be delivered, for example, subcutaneously by infection in order to deliver iRNA to keratinocytes in the skin. In order to cross intact mammalian skin, lipid vesicles must pass through a series of fine pores, each with a diameter less than 50 nm, under the influence of a suitable transdermal gradient. In addition, due to the lipid properties, these transferosomes can be self-optimizing (adaptive to the shape of pores, e.g., in the skin), self-repairing, and can frequently reach their targets without fragmenting, and often self-loading. The iRNA agents can include an RRMS tethered to a moiety which improves association with a liposome.
Surfactants
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. Surfactants find wide application in formulations such as emulsions (including microemulsions) and liposomes (see above). iRNA (or a precursor, e.g., a larger dsRNA which can be processed into a iRNA, or a DNA which encodes a iRNA or precursor) compositions can include a surfactant. In one embodiment, the iRNA is formulated as an emulsion that includes a surfactant. The most common way of classifying and ranking the properties of the many different types of surfactants, both natural and synthetic, is by the use of the hydrophile/lipophile balance (HLB). The nature of the hydrophilic group provides the most useful means for categorizing the different surfactants used in formulations (Rieger, in “Pharmaceutical Dosage Forms,” Marcel Dekker, Inc., New York, N.Y., 1988, p. 285).
If the surfactant molecule is not ionized, it is classified as a nonionic surfactant. Nonionic surfactants find wide application in pharmaceutical products and are usable over a wide range of pH values. In general their HLB values range from 2 to about 18 depending on their structure. Nonionic surfactants include nonionic esters such as ethylene glycol esters, propylene glycol esters, glyceryl esters, polyglyceryl esters, sorbitan esters, sucrose esters, and ethoxylated esters. Nonionic alkanolamides and ethers such as fatty alcohol ethoxylates, propoxylated alcohols, and ethoxylated/propoxylated block polymers are also included in this class. The polyoxyethylene surfactants are the most popular members of the nonionic surfactant class.
If the surfactant molecule carries a negative charge when it is dissolved or dispersed in water, the surfactant is classified as anionic. Anionic surfactants include carboxylates such as soaps, acyl lactylates, acyl amides of amino acids, esters of sulfuric acid such as alkyl sulfates and ethoxylated alkyl sulfates, sulfonates such as alkyl benzene sulfonates, acyl isethionates, acyl taurates and sulfosuccinates, and phosphates. The most important members of the anionic surfactant class are the alkyl sulfates and the soaps.
If the surfactant molecule carries a positive charge when it is dissolved or dispersed in water, the surfactant is classified as cationic. Cationic surfactants include quaternary ammonium salts and ethoxylated amines. The quaternary ammonium salts are the most used members of this class.
If the surfactant molecule has the ability to carry either a positive or negative charge, the surfactant is classified as amphoteric Amphoteric surfactants include acrylic acid derivatives, substituted alkylamides, N-alkylbetaines and phosphatides.
The use of surfactants in drug products, formulations and in emulsions has been reviewed (Rieger, in “Pharmaceutical Dosage Forms,” Marcel Dekker, Inc., New York, N.Y., 1988, p. 285).
Micelles and Other Membranous Formulations
For ease of exposition the micelles and other formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these micelles and other formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. The iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof)) composition can be provided as a micellar formulation. “Micelles” are defined herein as a particular type of molecular assembly in which amphipathic molecules are arranged in a spherical structure such that all the hydrophobic portions of the molecules are directed inward, leaving the hydrophilic portions in contact with the surrounding aqueous phase. The converse arrangement exists if the environment is hydrophobic.
A mixed micellar formulation suitable for delivery through transdermal membranes may be prepared by mixing an aqueous solution of the iRNA composition, an alkali metal C8 to C22 alkyl sulphate, and a micelle forming compounds. Exemplary micelle forming compounds include lecithin, hyaluronic acid, pharmaceutically acceptable salts of hyaluronic acid, glycolic acid, lactic acid, chamomile extract, cucumber extract, oleic acid, linoleic acid, linolenic acid, monoolein, monooleates, monolaurates, borage oil, evening of primrose oil, menthol, trihydroxy oxo cholanyl glycine and pharmaceutically acceptable salts thereof, glycerin, polyglycerin, lysine, polylysine, triolein, polyoxyethylene ethers and analogues thereof, polidocanol alkyl ethers and analogues thereof, chenodeoxycholate, deoxycholate, and mixtures thereof. The micelle forming compounds may be added at the same time or after addition of the alkali metal alkyl sulphate. Mixed micelles will form with substantially any kind of mixing of the ingredients but vigorous mixing is preferred in order to provide smaller size micelles.
In one method a first micellar composition is prepared which contains the iRNA composition and at least the alkali metal alkyl sulphate. The first micellar composition is then mixed with at least three micelle forming compounds to form a mixed micellar composition. In another method, the micellar composition is prepared by mixing the iRNA composition, the alkali metal alkyl sulphate and at least one of the micelle forming compounds, followed by addition of the remaining micelle forming compounds, with vigorous mixing.
Phenol and/or m-cresol may be added to the mixed micellar composition to stabilize the formulation and protect against bacterial growth. Alternatively, phenol and/or m-cresol may be added with the micelle forming ingredients. An isotonic agent such as glycerin may also be added after formation of the mixed micellar composition.
For delivery of the micellar formulation as a spray, the formulation can be put into an aerosol dispenser and the dispenser is charged with a propellant. The propellant, which is under pressure, is in liquid form in the dispenser. The ratios of the ingredients are adjusted so that the aqueous and propellant phases become one, i.e. there is one phase. If there are two phases, it is necessary to shake the dispenser prior to dispensing a portion of the contents, e.g. through a metered valve. The dispensed dose of pharmaceutical agent is propelled from the metered valve in a fine spray.
The preferred propellants are hydrogen-containing chlorofluorocarbons, hydrogen-containing fluorocarbons, dimethyl ether and diethyl ether. Even more preferred is HFA 134a (1,1,1,2 tetrafluoroethane).
The specific concentrations of the essential ingredients can be determined by relatively straightforward experimentation. For absorption through the oral cavities, it is often desirable to increase, e.g. at least double or triple, the dosage for through injection or administration through the gastrointestinal tract.
The iRNA agents can include an RRMS tethered to a moiety which improves association with a micelle or other membranous formulation.
Particles
For ease of exposition the particles, formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these particles, formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. In another embodiment, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) preparations may be incorporated into a particle, e.g., a microparticle. Microparticles can be produced by spray-drying, but may also be produced by other methods including lyophilization, evaporation, fluid bed drying, vacuum drying, or a combination of these techniques. See below for further description.
Sustained-Release Formulations. An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein can be formulated for controlled, e.g., slow release. Controlled release can be achieved by disposing the iRNA within a structure or substance which impedes its release. E.g., iRNA can be disposed within a porous matrix or in an erodable matrix, either of which allow release of the iRNA over a period of time.
Polymeric particles, e.g., polymeric in microparticles can be used as a sustained-release reservoir of iRNA that is taken up by cells only released from the microparticle through biodegradation. The polymeric particles in this embodiment should therefore be large enough to preclude phagocytosis (e.g., larger than 10 μm and preferably larger than 20 μm). Such particles can be produced by the same methods to make smaller particles, but with less vigorous mixing of the first and second emulsions. That is to say, a lower homogenization speed, vortex mixing speed, or sonication setting can be used to obtain particles having a diameter around 100 μm rather than 10 μm. The time of mixing also can be altered.
Larger microparticles can be formulated as a suspension, a powder, or an implantable solid, to be delivered by intramuscular, subcutaneous, intradermal, intravenous, or intraperitoneal injection; via inhalation (intranasal or intrapulmonary); orally; or by implantation. These particles are useful for delivery of any iRNA when slow release over a relatively long term is desired. The rate of degradation, and consequently of release, varies with the polymeric formulation.
Microparticles preferably include pores, voids, hollows, defects or other interstitial spaces that allow the fluid suspension medium to freely permeate or perfuse the particulate boundary. For example, the perforated microstructures can be used to form hollow, porous spray dried microspheres.
Polymeric particles containing iRNA (e.g., a sRNA) can be made using a double emulsion technique, for instance. First, the polymer is dissolved in an organic solvent. A preferred polymer is polylactic-co-glycolic acid (PLGA), with a lactic/glycolic acid weight ratio of 65:35, 50:50, or 75:25. Next, a sample of nucleic acid suspended in aqueous solution is added to the polymer solution and the two solutions are mixed to form a first emulsion. The solutions can be mixed by vortexing or shaking, and in a preferred method, the mixture can be sonicated. Most preferable is any method by which the nucleic acid receives the least amount of damage in the form of nicking, shearing, or degradation, while still allowing the formation of an appropriate emulsion. For example, acceptable results can be obtained with a Vibra-cell model VC-250 sonicator with a 1⁄8′′ microtip probe, at setting #3.
Spray-Drying. An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof)) can be prepared by spray drying. Spray dried iRNA can be administered to a subject or be subjected to further formulation. A pharmaceutical composition of iRNA can be prepared by spray drying a homogeneous aqueous mixture that includes a iRNA under conditions sufficient to provide a dispersible powdered composition, e.g., a pharmaceutical composition. The material for spray drying can also include one or more of: a pharmaceutically acceptable excipient, or a dispersibility-enhancing amount of a physiologically acceptable, water-soluble protein. The spray-dried product can be a dispersible powder that includes the iRNA.
Spray drying is a process that converts a liquid or slurry material to a dried particulate form. Spray drying can be used to provide powdered material for various administrative routes including inhalation. See, for example, M. Sacchetti and M. M. Van Oort in: Inhalation Aerosols Physical and Biological Basis for Therapy, A. J. Hickey, ed. Marcel Dekkar, New York, 1996.
Spray drying can include atomizing a solution, emulsion, or suspension to form a fine mist of droplets and drying the droplets. The mist can be projected into a drying chamber (e.g., a vessel, tank, tubing, or coil) where it contacts a drying gas. The mist can include solid or liquid pore forming agents. The solvent and pore forming agents evaporate from the droplets into the drying gas to solidify the droplets, simultaneously forming pores throughout the solid. The solid (typically in a powder, particulate form) then is separated from the drying gas and collected.
Spray drying includes bringing together a highly dispersed liquid, and a sufficient volume of air (e.g., hot air) to produce evaporation and drying of the liquid droplets. The preparation to be spray dried can be any solution, course suspension, slurry, colloidal dispersion, or paste that may be atomized using the selected spray drying apparatus. Typically, the feed is sprayed into a current of warm filtered air that evaporates the solvent and conveys the dried product to a collector. The spent air is then exhausted with the solvent. Several different types of apparatus may be used to provide the desired product. For example, commercial spray dryers manufactured by Buchi Ltd. or Niro Corp. can effectively produce particles of desired size.
Spray-dried powdered particles can be approximately spherical in shape, nearly uniform in size and frequently hollow. There may be some degree of irregularity in shape depending upon the incorporated medicament and the spray drying conditions. In many instances the dispersion stability of spray-dried microspheres appears to be more effective if an inflating agent (or blowing agent) is used in their production. Particularly preferred embodiments may comprise an emulsion with an inflating agent as the disperse or continuous phase (the other phase being aqueous in nature). An inflating agent is preferably dispersed with a surfactant solution, using, for instance, a commercially available microfluidizer at a pressure of about 5000 to 15,000 psi. This process forms an emulsion, preferably stabilized by an incorporated surfactant, typically comprising submicron droplets of water immiscible blowing agent dispersed in an aqueous continuous phase. The formation of such dispersions using this and other techniques are common and well known to those in the art. The blowing agent is preferably a fluorinated compound (e.g. perfluorohexane, perfluorooctyl bromide, perfluorodecalin, perfluorobutyl ethane) which vaporizes during the spray-drying process, leaving behind generally hollow, porous aerodynamically light microspheres. As will be discussed in more detail below, other suitable blowing agents include chloroform, freons, and hydrocarbons. Nitrogen gas and carbon dioxide are also contemplated as a suitable blowing agent.
Although the perforated microstructures are preferably formed using a blowing agent as described above, it will be appreciated that, in some instances, no blowing agent is required and an aqueous dispersion of the medicament and surfactant(s) are spray dried directly. In such cases, the formulation may be amenable to process conditions (e.g., elevated temperatures) that generally lead to the formation of hollow, relatively porous microparticles. Moreover, the medicament may possess special physicochemical properties (e.g., high crystallinity, elevated melting temperature, surface activity, etc.) that make it particularly suitable for use in such techniques.
The perforated microstructures may optionally be associated with, or comprise, one or more surfactants. Moreover, miscible surfactants may optionally be combined with the suspension medium liquid phase. It will be appreciated by those skilled in the art that the use of surfactants may further increase dispersion stability, simplify formulation procedures or increase bioavailability upon administration. Of course combinations of surfactants, including the use of one or more in the liquid phase and one or more associated with the perforated microstructures are contemplated as being within the scope of the invention. By “associated with or comprise” it is meant that the structural matrix or perforated microstructure may incorporate, adsorb, absorb, be coated with or be formed by the surfactant.
Surfactants suitable for use include any compound or composition that aids in the formation and maintenance of the stabilized respiratory dispersions by forming a layer at the interface between the structural matrix and the suspension medium. The surfactant may comprise a single compound or any combination of compounds, such as in the case of co-surfactants. Particularly preferred surfactants are substantially insoluble in the propellant, nonfluorinated, and selected from the group consisting of saturated and unsaturated lipids, nonionic detergents, nonionic block copolymers, ionic surfactants, and combinations of such agents. It should be emphasized that, in addition to the aforementioned surfactants, suitable (i.e. biocompatible) fluorinated surfactants are compatible with the teachings herein and may be used to provide the desired stabilized preparations.
Lipids, including phospholipids, from both natural and synthetic sources may be used in varying concentrations to form a structural matrix. Generally, compatible lipids comprise those that have a gel to liquid crystal phase transition greater than about 40° C. Preferably, the incorporated lipids are relatively long chain (i.e. C6-C22) saturated lipids and more preferably comprise phospholipids. Exemplary phospholipids useful in the disclosed stabilized preparations comprise egg phosphatidylcholine, dilauroylphosphatidylcholine, dioleylphosphatidylcholine, dipalmitoylphosphatidyl-choline, disteroylphosphatidylcholine, short-chain phosphatidylcholines, phosphatidylethanolamine, dioleylphosphatidylethanolamine, phosphatidylserine, phosphatidylglycerol, phosphatidylinositol, glycolipids, ganglioside GM1, sphingomyelin, phosphatidic acid, cardiolipin; lipids bearing polymer chains such as, polyethylene glycol, chitin, hyaluronic acid, or polyvinylpyrrolidone; lipids bearing sulfonated mono-, di-, and polysaccharides; fatty acids such as palmitic acid, stearic acid, and oleic acid; cholesterol, cholesterol esters, and cholesterol hemisuccinate. Due to their excellent biocompatibility characteristics, phospholipids and combinations of phospholipids and poloxamers are particularly suitable for use in the stabilized dispersions disclosed herein.
Compatible nonionic detergents comprise: sorbitan esters including sorbitan trioleate (SpansTM 85), sorbitan sesquioleate, sorbitan monooleate, sorbitan monolaurate, polyoxyethylene (20) sorbitan monolaurate, and polyoxyethylene (20) sorbitan monooleate, oleyl polyoxyethylene (2) ether, stearyl polyoxyethylene (2) ether, lauryl polyoxyethylene (4) ether, glycerol esters, and sucrose esters. Other suitable nonionic detergents can be easily identified using McCutcheon's Emulsifiers and Detergents (McPublishing Co., Glen Rock, N.J.). Preferred block copolymers include diblock and triblock copolymers of polyoxyethylene and polyoxypropylene, including poloxamer 188 (Pluronic® F68), poloxamer 407 (Pluronic® F-127), and poloxamer 338. Ionic surfactants such as sodium sulfosuccinate, and fatty acid soaps may also be utilized. In preferred embodiments, the microstructures may comprise oleic acid or its alkali salt.
In addition to the aforementioned surfactants, cationic surfactants or lipids are preferred especially in the case of delivery of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). Examples of suitable cationic lipids include: DOTMA, N—[-(2,3-dioleyloxy)propyl]-N,N,N-trimethylammonium-chloride; DOTAP, 1,2-dioleyloxy-3-(trimethylammonio)propane; and DOTB, 1,2-dioleyl-3-(4′-trimethylammonio)butanoyl-sn-glycerol. Polycationic amino acids such as polylysine, and polyarginine are also contemplated.
For the spraying process, such spraying methods as rotary atomization, pressure atomization and two-fluid atomization can be used. Examples of the devices used in these processes include “Parubisu [phonetic rendering] Mini-Spray GA-32” and “Parubisu Spray Drier DL-41”, manufactured by Yamato Chemical Co., or “Spray Drier CL-8,” “Spray Drier L-8,” “Spray Drier FL-12,” “Spray Drier FL-16” or “Spray Drier FL-20,” manufactured by Okawara Kakoki Co., can be used for the method of spraying using rotary-disk atomizer.
While no particular restrictions are placed on the gas used to dry the sprayed material, it is recommended to use air, nitrogen gas or an inert gas. The temperature of the inlet of the gas used to dry the sprayed materials such that it does not cause heat deactivation of the sprayed material. The range of temperatures may vary between about 50° C. to about 200° C., preferably between about 50° C. and 100° C. The temperature of the outlet gas used to dry the sprayed material, may vary between about 0° C. and about 150° C., preferably between 0° C. and 90° C., and even more preferably between 0° C. and 60° C.
The spray drying is done under conditions that result in substantially amorphous powder of homogeneous constitution having a particle size that is respirable, a low moisture content and flow characteristics that allow for ready aerosolization. Preferably the particle size of the resulting powder is such that more than about 98% of the mass is in particles having a diameter of about 10 μm or less with about 90% of the mass being in particles having a diameter less than 5 μm. Alternatively, about 95% of the mass will have particles with a diameter of less than 10 μm with about 80% of the mass of the particles having a diameter of less than 5 μm.
The dispersible pharmaceutical-based dry powders that include the iRNA preparation may optionally be combined with pharmaceutical carriers or excipients which are suitable for respiratory and pulmonary administration. Such carriers may serve simply as bulking agents when it is desired to reduce the iRNA concentration in the powder which is being delivered to a patient, but may also serve to enhance the stability of the iRNA compositions and to improve the dispersibility of the powder within a powder dispersion device in order to provide more efficient and reproducible delivery of the iRNA and to improve handling characteristics of the iRNA such as flowability and consistency to facilitate manufacturing and powder filling.
Such carrier materials may be combined with the drug prior to spray drying, i.e., by adding the carrier material to the purified bulk solution. In that way, the carrier particles will be formed simultaneously with the drug particles to produce a homogeneous powder. Alternatively, the carriers may be separately prepared in a dry powder form and combined with the dry powder drug by blending. The powder carriers will usually be crystalline (to avoid water absorption), but might in some cases be amorphous or mixtures of crystalline and amorphous. The size of the carrier particles may be selected to improve the flowability of the drug powder, typically being in the range from 25 μm to 100 μm. A preferred carrier material is crystalline lactose having a size in the above-stated range.
Powders prepared by any of the above methods will be collected from the spray dryer in a conventional manner for subsequent use. For use as pharmaceuticals and other purposes, it will frequently be desirable to disrupt any agglomerates which may have formed by screening or other conventional techniques. For pharmaceutical uses, the dry powder formulations will usually be measured into a single dose, and the single dose sealed into a package. Such packages are particularly useful for dispersion in dry powder inhalers, as described in detail below. Alternatively, the powders may be packaged in multiple-dose containers.
Methods for spray drying hydrophobic and other drugs and components are described in U.S. Pat. Nos. 5,000,888; 5,026,550; 4,670,419, 4,540,602; and 4,486,435. Bloch and Speison (1983) Pharm. Acta Hely 58:14-22 teaches spray drying of hydrochlorothiazide and chlorthalidone (lipophilic drugs) and a hydrophilic adjuvant (pentaerythritol) in azeotropic solvents of dioxane-water and 2-ethoxyethanol-water. A number of Japanese Patent application Abstracts relate to spray drying of hydrophilic-hydrophobic product combinations, including JP 806766; JP 7242568; JP 7101884; JP 7101883; JP 71018982; JP 7101881; and JP 4036233. Other foreign patent publications relevant to spray drying hydrophilic-hydrophobic product combinations include FR 2594693; DE 2209477; and WO 88/07870.
Lyophilization.
An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) preparation can be made by lyophilization. Lyophilization is a freeze-drying process in which water is sublimed from the composition after it is frozen. The particular advantage associated with the lyophilization process is that biologicals and pharmaceuticals that are relatively unstable in an aqueous solution can be dried without elevated temperatures (thereby eliminating the adverse thermal effects), and then stored in a dry state where there are few stability problems. With respect to the instant invention such techniques are particularly compatible with the incorporation of nucleic acids in perforated microstructures without compromising physiological activity. Methods for providing lyophilized particulates are known to those of skill in the art and it would clearly not require undue experimentation to provide dispersion compatible microstructures in accordance with the teachings herein. Accordingly, to the extent that lyophilization processes may be used to provide microstructures having the desired porosity and size, they are conformance with the teachings herein and are expressly contemplated as being within the scope of the instant invention.
Targeting
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNAs. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention.
In some embodiments, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) is targeted to a particular cell. For example, a liposome or particle or other structure that includes a iRNA can also include a targeting moiety that recognizes a specific molecule on a target cell. The targeting moiety can be a molecule with a specific affinity for a target cell. Targeting moieties can include antibodies directed against a protein found on the surface of a target cell, or the ligand or a receptor-binding portion of a ligand for a molecule found on the surface of a target cell. For example, the targeting moiety can recognize a cancer-specific antigen (e.g., CA15-3, CA19-9, CEA, or HER2/neu.) or a viral antigen, thus delivering the iRNA to a cancer cell or a virus-infected cell. Exemplary targeting moieties include antibodies (such as IgM, IgG, IgA, IgD, and the like, or a functional portions thereof), ligands for cell surface receptors (e.g., ectodomains thereof).
Table 3 provides a number of antigens which can be used to target selected cells.








TABLE 3





ANTIGEN
Exemplary tumor tissue







CEA (carcinoembryonic antigen)
colon, breast, lung


PSA (prostate specific antigen)
prostate cancer


CA-125
ovarian cancer


CA 15-3
breast cancer


CA 19-9
breast cancer


HER2/neu
breast cancer


α-feto protein
testicular cancer, hepatic cancer


β-HCG (human chorionic
testicular cancer, choriocarcinoma


gonadotropin)


MUC-1
breast cancer


Estrogen receptor
breast cancer, uterine cancer


Progesterone receptor
breast cancer, uterine cancer


EGFr (epidermal growth factor
bladder cancer


receptor)









In one embodiment, the targeting moiety is attached to a liposome. For example, U.S. Pat. No. 6,245,427 describes a method for targeting a liposome using a protein or peptide. In another example, a cationic lipid component of the liposome is derivatized with a targeting moiety. For example, WO 96/37194 describes converting N-glutaryldioleoylphosphatidyl ethanolamine to a N-hydroxysuccinimide activated ester. The product was then coupled to an RGD peptide.
Genes and Diseases
In one aspect, the invention features, a method of treating a subject at risk for or afflicted with unwanted cell proliferation, e.g., malignant or nonmalignant cell proliferation. The method includes:
providing an iRNA agent, e.g., an sRNA or iRNA agent described herein, e.g., an iRNA having a structure described herein, where the iRNA is homologous to and can silence, e.g., by cleavage, a gene which promotes unwanted cell proliferation;
administering an iRNA agent, e.g., an sRNA or iRNA agent described herein to a subject, preferably a human subject,
thereby treating the subject.
In a preferred embodiment the gene is a growth factor or growth factor receptor gene, a kinase, e.g., a protein tyrosine, serine or threonine kinase gene, an adaptor protein gene, a gene encoding a G protein superfamily molecule, or a gene encoding a transcription factor.
In a preferred embodiment the iRNA agent silences the PDGF beta gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PDGF beta expression, e.g., testicular and lung cancers.
In another preferred embodiment the iRNA agent silences the Erb-B gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Erb-B expression, e.g., breast cancer.
In a preferred embodiment the iRNA agent silences the Src gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Src expression, e.g., colon cancers.
In a preferred embodiment the iRNA agent silences the CRK gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted CRK expression, e.g., colon and lung cancers.
In a preferred embodiment the iRNA agent silences the GRB2 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted GRB2 expression, e.g., squamous cell carcinoma.
In another preferred embodiment the iRNA agent silences the RAS gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted RAS expression, e.g., pancreatic, colon and lung cancers, and chronic leukemia.
In another preferred embodiment the iRNA agent silences the MEKK gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted MEKK expression, e.g., squamous cell carcinoma, melanoma or leukemia.
In another preferred embodiment the iRNA agent silences the JNK gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted JNK expression, e.g., pancreatic or breast cancers.
In a preferred embodiment the iRNA agent silences the RAF gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted RAF expression, e.g., lung cancer or leukemia.
In a preferred embodiment the iRNA agent silences the Erk1/2 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Erk1/2 expression, e.g., lung cancer.
In another preferred embodiment the iRNA agent silences the PCNA(p21) gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PCNA expression, e.g., lung cancer.
In a preferred embodiment the iRNA agent silences the MYB gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted MYB expression, e.g., colon cancer or chronic myelogenous leukemia.
In a preferred embodiment the iRNA agent silences the c-MYC gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted c-MYC expression, e.g., Burkitt's lymphoma or neuroblastoma.
In another preferred embodiment the iRNA agent silences the JUN gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted JUN expression, e.g., ovarian, prostate or breast cancers.
In another preferred embodiment the iRNA agent silences the FOS gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted FOS expression, e.g., skin or prostate cancers.
In a preferred embodiment the iRNA agent silences the BCL-2 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted BCL-2 expression, e.g., lung or prostate cancers or Non-Hodgkin lymphoma.
In a preferred embodiment the iRNA agent silences the Cyclin D gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Cyclin D expression, e.g., esophageal and colon cancers.
In a preferred embodiment the iRNA agent silences the VEGF gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted VEGF expression, e.g., esophageal and colon cancers.
In a preferred embodiment the iRNA agent silences the EGFR gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted EGFR expression, e.g., breast cancer.
In another preferred embodiment the iRNA agent silences the Cyclin A gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Cyclin A expression, e.g., lung and cervical cancers.
In another preferred embodiment the iRNA agent silences the Cyclin E gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Cyclin E expression, e.g., lung and breast cancers.
In another preferred embodiment the iRNA agent silences the WNT-1 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted WNT-1 expression, e.g., basal cell carcinoma.
In another preferred embodiment the iRNA agent silences the beta-catenin gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted beta-catenin expression, e.g., adenocarcinoma or hepatocellular carcinoma.
In another preferred embodiment the iRNA agent silences the c-MET gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted c-MET expression, e.g., hepatocellular carcinoma.
In another preferred embodiment the iRNA agent silences the PKC gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PKC expression, e.g., breast cancer.
In a preferred embodiment the iRNA agent silences the NFKB gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted NFKB expression, e.g., breast cancer.
In a preferred embodiment the iRNA agent silences the STAT3 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted STAT3 expression, e.g., prostate cancer.
In another preferred embodiment the iRNA agent silences the survivin gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted survivin expression, e.g., cervical or pancreatic cancers.
In another preferred embodiment the iRNA agent silences the Her2/Neu gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Her2/Neu expression, e.g., breast cancer.
In another preferred embodiment the iRNA agent silences the topoisomerase I gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted topoisomerase I expression, e.g., ovarian and colon cancers.
In a preferred embodiment the iRNA agent silences the topoisomerase II alpha gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted topoisomerase II expression, e.g., breast and colon cancers.
In a preferred embodiment the iRNA agent silences mutations in the p73 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted p73 expression, e.g., colorectal adenocarcinoma.
In a preferred embodiment the iRNA agent silences mutations in the p21(WAF1/CIP1) gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted p21(WAF1/CIP1) expression, e.g., liver cancer.
In a preferred embodiment the iRNA agent silences mutations in the p27(KIP1) gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted p27(KIP1) expression, e.g., liver cancer.
In a preferred embodiment the iRNA agent silences mutations in the PPM1D gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PPM1D expression, e.g., breast cancer.
In a preferred embodiment the iRNA agent silences mutations in the RAS gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted RAS expression, e.g., breast cancer.
In another preferred embodiment the iRNA agent silences mutations in the caveolin I gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted caveolin I expression, e.g., esophageal squamous cell carcinoma.
In another preferred embodiment the iRNA agent silences mutations in the MIB I gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted MIB I expression, e.g., male breast carcinoma (MBC).
In another preferred embodiment the iRNA agent silences mutations in the MTAI gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted MTAI expression, e.g., ovarian carcinoma.
In another preferred embodiment the iRNA agent silences mutations in the M68 gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted M68 expression, e.g., human adenocarcinomas of the esophagus, stomach, colon, and rectum.
In preferred embodiments the iRNA agent silences mutations in tumor suppressor genes, and thus can be used as a method to promote apoptotic activity in combination with chemotherapeutics.
In a preferred embodiment the iRNA agent silences mutations in the p53 tumor suppressor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted p53 expression, e.g., gall bladder, pancreatic and lung cancers.
In a preferred embodiment the iRNA agent silences mutations in the p53 family member DN-p63, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted DN-p63 expression, e.g., squamous cell carcinoma
In a preferred embodiment the iRNA agent silences mutations in the pRb tumor suppressor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted pRb expression, e.g., oral squamous cell carcinoma
In a preferred embodiment the iRNA agent silences mutations in the APC1 tumor suppressor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted APC1 expression, e.g., colon cancer.
In a preferred embodiment the iRNA agent silences mutations in the BRCA1 tumor suppressor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted BRCA1 expression, e.g., breast cancer.
In a preferred embodiment the iRNA agent silences mutations in the PTEN tumor suppressor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PTEN expression, e.g., hamartomas, gliomas, and prostate and endometrial cancers.
In a preferred embodiment the iRNA agent silences MLL fusion genes, e.g., MLL-AF9, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted MLL fusion gene expression, e.g., acute leukemias.
In another preferred embodiment the iRNA agent silences the BCR/ABL fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted BCR/ABL fusion gene expression, e.g., acute and chronic leukemias.
In another preferred embodiment the iRNA agent silences the TEL/AML1 fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted TEL/AML1 fusion gene expression, e.g., childhood acute leukemia.
In another preferred embodiment the iRNA agent silences the EWS/FLI1 fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted EWS/FLI1 fusion gene expression, e.g., Ewing Sarcoma.
In another preferred embodiment the iRNA agent silences the TLS/FUS1 fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted TLS/FUS1 fusion gene expression, e.g., Myxoid liposarcoma.
In another preferred embodiment the iRNA agent silences the PAX3/FKHR fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted PAX3/FKHR fusion gene expression, e.g., Myxoid liposarcoma.
In another preferred embodiment the iRNA agent silences the AML1/ETO fusion gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted AML1/ETO fusion gene expression, e.g., acute leukemia.
In another aspect, the invention features, a method of treating a subject, e.g., a human, at risk for or afflicted with a disease or disorder that may benefit by angiogenesis inhibition e.g., cancer. The method includes:
providing an iRNA agent, e.g., an iRNA agent having a structure described herein, which iRNA agent is homologous to and can silence, e.g., by cleavage, a gene which mediates angiogenesis;
administering the iRNA agent to a subject,
thereby treating the subject.
In a preferred embodiment the iRNA agent silences the alpha v-integrin gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted alpha V integrin, e.g., brain tumors or tumors of epithelial origin.
In a preferred embodiment the iRNA agent silences the Flt-1 receptor gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted Flt-1 receptors, eg. Cancer and rheumatoid arthritis.
In a preferred embodiment the iRNA agent silences the tubulin gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted tubulin, eg. Cancer and retinal neovascularization.
In a preferred embodiment the iRNA agent silences the tubulin gene, and thus can be used to treat a subject having or at risk for a disorder characterized by unwanted tubulin, eg. Cancer and retinal neovascularization.
In another aspect, the invention features a method of treating a subject infected with a virus or at risk for or afflicted with a disorder or disease associated with a viral infection. The method includes:
providing an iRNA agent, e.g., and iRNA agent having a structure described herein, which iRNA agent is homologous to and can silence, e.g., by cleavage, a viral gene of a cellular gene which mediates viral function, e.g., entry or growth;
administering the iRNA agent to a subject, preferably a human subject,
thereby treating the subject.
Thus, the invention provides for a method of treating patients infected by the Human Papilloma Virus (HPV) or at risk for or afflicted with a disorder mediated by HPV, e.g, cervical cancer. HPV is linked to 95% of cervical carcinomas and thus an antiviral therapy is an attractive method to treat these cancers and other symptoms of viral infection.
In a preferred embodiment, the expression of a HPV gene is reduced. In another preferred embodiment, the HPV gene is one of the group of E2, E6, or E7.
In a preferred embodiment the expression of a human gene that is required for HPV replication is reduced.
The invention also includes a method of treating patients infected by the Human Immunodeficiency Virus (HIV) or at risk for or afflicted with a disorder mediated by HIV, e.g., Acquired Immune Deficiency Syndrome (AIDS).
In a preferred embodiment, the expression of a HIV gene is reduced. In another preferred embodiment, the HIV gene is CCR5, Gag, or Rev.
In a preferred embodiment the expression of a human gene that is required for HIV replication is reduced. In another preferred embodiment, the gene is CD4 or Tsg101.
The invention also includes a method for treating patients infected by the Hepatitis B Virus (HBV) or at risk for or afflicted with a disorder mediated by HBV, e.g., cirrhosis and heptocellular carcinoma.
In a preferred embodiment, the expression of a HBV gene is reduced. In another preferred embodiment, the targeted HBV gene encodes one of the group of the tail region of the HBV core protein, the pre-cregious (pre-c) region, or the cregious (c) region. In another preferred embodiment, a targeted HBV-RNA sequence is comprised of the poly(A) tail.
In preferred embodiment the expression of a human gene that is required for HBV replication is reduced.
The invention also provides for a method of treating patients infected by the Hepatitis A Virus (HAV), or at risk for or afflicted with a disorder mediated by HAV.
In a preferred embodiment the expression of a human gene that is required for HAV replication is reduced.
The present invention provides for a method of treating patients infected by the Hepatitis C Virus (HCV), or at risk for or afflicted with a disorder mediated by HCV, e.g., cirrhosis
In a preferred embodiment, the expression of a HCV gene is reduced.
In another preferred embodiment the expression of a human gene that is required for HCV replication is reduced.
The present invention also provides for a method of treating patients infected by the any of the group of Hepatitis Viral strains comprising hepatitis D, E, F, G, or H, or patients at risk for or afflicted with a disorder mediated by any of these strains of hepatitis.
In a preferred embodiment, the expression of a Hepatitis, D, E, F, G, or H gene is reduced.
In another preferred embodiment the expression of a human gene that is required for hepatitis D, E, F, G or H replication is reduced.
Methods of the invention also provide for treating patients infected by the Respiratory Syncytial Virus (RSV) or at risk for or afflicted with a disorder mediated by RSV, e.g, lower respiratory tract infection in infants and childhood asthma, pneumonia and other complications, e.g., in the elderly.
In a preferred embodiment, the expression of a RSV gene is reduced. In another preferred embodiment, the targeted HBV gene encodes one of the group of genes N, L, or P.
In a preferred embodiment the expression of a human gene that is required for RSV replication is reduced.
Methods of the invention provide for treating patients infected by the Herpes Simplex Virus (HSV) or at risk for or afflicted with a disorder mediated by HSV, e.g, genital herpes and cold sores as well as life-threatening or sight-impairing disease mainly in immunocompromised patients.
In a preferred embodiment, the expression of a HSV gene is reduced. In another preferred embodiment, the targeted HSV gene encodes DNA polymerase or the helicase-primase.
In a preferred embodiment the expression of a human gene that is required for HSV replication is reduced.
The invention also provides a method for treating patients infected by the herpes Cytomegalovirus (CMV) or at risk for or afflicted with a disorder mediated by CMV, e.g., congenital virus infections and morbidity in immunocompromised patients.
In a preferred embodiment, the expression of a CMV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for CMV replication is reduced.
Methods of the invention also provide for a method of treating patients infected by the herpes Epstein Barr Virus (EBV) or at risk for or afflicted with a disorder mediated by EBV, e.g., NK/T-cell lymphoma, non-Hodgkin lymphoma, and Hodgkin disease.
In a preferred embodiment, the expression of a EBV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for EBV replication is reduced.
Methods of the invention also provide for treating patients infected by Kaposi's Sarcoma-associated Herpes Virus (KSHV), also called human herpesvirus 8, or patients at risk for or afflicted with a disorder mediated by KSHV, e.g., Kaposi's sarcoma, multicentric Castleman's disease and AIDS-associated primary effusion lymphoma.
In a preferred embodiment, the expression of a KSHV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for KSHV replication is reduced.
The invention also includes a method for treating patients infected by the JC Virus (JCV) or a disease or disorder associated with this virus, e.g., progressive multifocal leukoencephalopathy (PML).
In a preferred embodiment, the expression of a JCV gene is reduced.
In preferred embodiment the expression of a human gene that is required for JCV replication is reduced.
Methods of the invention also provide for treating patients infected by the myxovirus or at risk for or afflicted with a disorder mediated by myxovirus, e.g., influenza.
In a preferred embodiment, the expression of a myxovirus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for myxovirus replication is reduced.
Methods of the invention also provide for treating patients infected by the rhinovirus or at risk for of afflicted with a disorder mediated by rhinovirus, e.g., the common cold.
In a preferred embodiment, the expression of a rhinovirus gene is reduced.
In preferred embodiment the expression of a human gene that is required for rhinovirus replication is reduced.
Methods of the invention also provide for treating patients infected by the coronavirus or at risk for of afflicted with a disorder mediated by coronavirus, e.g., the common cold.
In a preferred embodiment, the expression of a coronavirus gene is reduced.
In preferred embodiment the expression of a human gene that is required for coronavirus replication is reduced.
Methods of the invention also provide for treating patients infected by the flavivirus West Nile or at risk for or afflicted with a disorder mediated by West Nile Virus.
In a preferred embodiment, the expression of a West Nile Virus gene is reduced. In another preferred embodiment, the West Nile Virus gene is one of the group comprising E, NS3, or NS5.
In a preferred embodiment the expression of a human gene that is required for West Nile Virus replication is reduced.
Methods of the invention also provide for treating patients infected by the St. Louis Encephalitis flavivirus, or at risk for or afflicted with a disease or disorder associated with this virus, e.g., viral haemorrhagic fever or neurological disease.
In a preferred embodiment, the expression of a St. Louis Encephalitis gene is reduced.
In a preferred embodiment the expression of a human gene that is required for St. Louis Encephalitis virus replication is reduced.
Methods of the invention also provide for treating patients infected by the Tick-borne encephalitis flavivirus, or at risk for or afflicted with a disorder mediated by Tick-borne encephalitis virus, e.g., viral haemorrhagic fever and neurological disease.
In a preferred embodiment, the expression of a Tick-borne encephalitis virus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Tick-borne encephalitis virus replication is reduced.
Methods of the invention also provide for methods of treating patients infected by the Murray Valley encephalitis flavivirus, which commonly results in viral haemorrhagic fever and neurological disease.
In a preferred embodiment, the expression of a Murray Valley encephalitis virus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Murray Valley encephalitis virus replication is reduced.
The invention also includes methods for treating patients infected by the dengue flavivirus, or a disease or disorder associated with this virus, e.g., dengue haemorrhagic fever.
In a preferred embodiment, the expression of a dengue virus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for dengue virus replication is reduced.
Methods of the invention also provide for treating patients infected by the Simian Virus 40 (SV40) or at risk for or afflicted with a disorder mediated by SV40, e.g., tumorigenesis.
In a preferred embodiment, the expression of a SV40 gene is reduced.
In a preferred embodiment the expression of a human gene that is required for SV40 replication is reduced.
The invention also includes methods for treating patients infected by the Human T Cell Lymphotropic Virus (HTLV), or a disease or disorder associated with this virus, e.g., leukemia and myelopathy.
In a preferred embodiment, the expression of a HTLV gene is reduced. In another preferred embodiment the HTLV1 gene is the Tax transcriptional activator.
In a preferred embodiment the expression of a human gene that is required for HTLV replication is reduced.
Methods of the invention also provide for treating patients infected by the Moloney-Murine Leukemia Virus (Mo-MuLV) or at risk for or afflicted with a disorder mediated by Mo-MuLV, e.g., T-cell leukemia.
In a preferred embodiment, the expression of a Mo-MuLV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Mo-MuLV replication is reduced.
Methods of the invention also provide for treating patients infected by the encephalomyocarditis virus (EMCV) or at risk for or afflicted with a disorder mediated by EMCV, e.g. myocarditis. EMCV leads to myocarditis in mice and pigs and is capable of infecting human myocardial cells. This virus is therefore a concern for patients undergoing xenotransplantation.
In a preferred embodiment, the expression of a EMCV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for EMCV replication is reduced.
The invention also includes a method for treating patients infected by the measles virus (MV) or at risk for or afflicted with a disorder mediated by MV, e.g. measles.
In a preferred embodiment, the expression of a MV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for MV replication is reduced.
The invention also includes a method for treating patients infected by the Vericella zoster virus (VZV) or at risk for or afflicted with a disorder mediated by VZV, e.g. chicken pox or shingles (also called zoster).
In a preferred embodiment, the expression of a VZV gene is reduced.
In a preferred embodiment the expression of a human gene that is required for VZV replication is reduced.
The invention also includes a method for treating patients infected by an adenovirus or at risk for or afflicted with a disorder mediated by an adenovirus, e.g. respiratory tract infection.
In a preferred embodiment, the expression of an adenovirus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for adenovirus replication is reduced.
The invention includes a method for treating patients infected by a yellow fever virus (YFV) or at risk for or afflicted with a disorder mediated by a YFV, e.g. respiratory tract infection.
In a preferred embodiment, the expression of a YFV gene is reduced. In another preferred embodiment, the preferred gene is one of a group that includes the E, NS2A, or NS3 genes.
In a preferred embodiment the expression of a human gene that is required for YFV replication is reduced.
Methods of the invention also provide for treating patients infected by the poliovirus or at risk for or afflicted with a disorder mediated by poliovirus, e.g., polio.
In a preferred embodiment, the expression of a poliovirus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for poliovirus replication is reduced.
Methods of the invention also provide for treating patients infected by a poxvirus or at risk for or afflicted with a disorder mediated by a poxvirus, e.g., smallpox
In a preferred embodiment, the expression of a poxvirus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for poxvirus replication is reduced.
In another, aspect the invention features methods of treating a subject infected with a pathogen, e.g., a bacterial, amoebic, parasitic, or fungal pathogen. The method includes:
providing a iRNA agent, e.g., a siRNA having a structure described herein, where siRNA is homologous to and can silence, e.g., by cleavage of a pathogen gene;
administering the iRNA agent to a subject, prefereably a human subject,
thereby treating the subject.
The target gene can be one involved in growth, cell wall synthesis, protein synthesis, transcription, energy metabolism, e.g., the Krebs cycle, or toxin production.
Thus, the present invention provides for a method of treating patients infected by a plasmodium that causes malaria.
In a preferred embodiment, the expression of a plasmodium gene is reduced. In another preferred embodiment, the gene is apical membrane antigen 1 (AMA1).
In a preferred embodiment the expression of a human gene that is required for plasmodium replication is reduced.
The invention also includes methods for treating patients infected by the Mycobacterium ulcerans, or a disease or disorder associated with this pathogen, e.g. Buruli ulcers.
In a preferred embodiment, the expression of a Mycobacterium ulcerans gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Mycobacterium ulcerans replication is reduced.
The invention also includes methods for treating patients infected by the Mycobacterium tuberculosis, or a disease or disorder associated with this pathogen, e.g. tuberculosis.
In a preferred embodiment, the expression of a Mycobacterium tuberculosis gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Mycobacterium tuberculosis replication is reduced.
The invention also includes methods for treating patients infected by the Mycobacterium leprae, or a disease or disorder associated with this pathogen, e.g. leprosy.
In a preferred embodiment, the expression of a Mycobacterium leprae gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Mycobacterium leprae replication is reduced.
The invention also includes methods for treating patients infected by the bacteria Staphylococcus aureus, or a disease or disorder associated with this pathogen, e.g. infections of the skin and muscous membranes.
In a preferred embodiment, the expression of a Staphylococcus aureus gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Staphylococcus aureus replication is reduced.
The invention also includes methods for treating patients infected by the bacteria Streptococcus pneumoniae, or a disease or disorder associated with this pathogen, e.g. pneumonia or childhood lower respiratory tract infection.
In a preferred embodiment, the expression of a Streptococcus pneumoniae gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Streptococcus pneumoniae replication is reduced.
The invention also includes methods for treating patients infected by the bacteria Streptococcus pyogenes, or a disease or disorder associated with this pathogen, e.g. Strep throat or Scarlet fever.
In a preferred embodiment, the expression of a Streptococcus pyogenes gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Streptococcus pyogenes replication is reduced.
The invention also includes methods for treating patients infected by the bacteria Chlamydia pneumoniae, or a disease or disorder associated with this pathogen, e.g. pneumonia or childhood lower respiratory tract infection
In a preferred embodiment, the expression of a Chlamydia pneumoniae gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Chlamydia pneumoniae replication is reduced.
The invention also includes methods for treating patients infected by the bacteria Mycoplasma pneumoniae, or a disease or disorder associated with this pathogen, e.g. pneumonia or childhood lower respiratory tract infection
In a preferred embodiment, the expression of a Mycoplasma pneumoniae gene is reduced.
In a preferred embodiment the expression of a human gene that is required for Mycoplasma pneumoniae replication is reduced.
In one aspect, the invention features, a method of treating a subject, e.g., a human, at risk for or afflicted with a disease or disorder characterized by an unwanted immune response, e.g., an inflammatory disease or disorder, or an autoimmune disease or disorder. The method includes:
providing an iRNA agent, e.g., an iRNA agent having a structure described herein, which iRNA agent is homologous to and can silence, e.g., by cleavage, a gene which mediates an unwanted immune response;
administering the iRNA agent to a subject,
thereby treating the subject.
In a preferred embodiment the disease or disorder is an ischemia or reperfusion injury, e.g., ischemia or reperfusion injury associated with acute myocardial infarction, unstable angina, cardiopulmonary bypass, surgical intervention e.g., angioplasty, e.g., percutaneous transluminal coronary angioplasty, the response to a transplantated organ or tissue, e.g., transplanted cardiac or vascular tissue; or thrombolysis.
In a preferred embodiment the disease or disorder is restenosis, e.g., restenosis associated with surgical intervention e.g., angioplasty, e.g., percutaneous transluminal coronary angioplasty.
In a preferred embodiment the disease or disorder is Inflammatory Bowel Disease, e.g., Crohn Disease or Ulcerative Colitis.
In a preferred embodiment the disease or disorder is inflammation associated with an infection or injury.
In a preferred embodiment the disease or disorder is asthma, lupus, multiple sclerosis, diabetes, e.g., type II diabetes, arthritis, e.g., rheumatoid or psoriatic.
In particularly preferred embodiments the iRNA agent silences an integrin or co-ligand thereof, e.g., VLA4, VCAM, ICAM.
In particularly preferred embodiments the iRNA agent silences a selectin or co-ligand thereof, e.g., P-selectin, E-selectin (ELAM), I-selectin, P-selectin glycoprotein-1 (PSGL-1).
In particularly preferred embodiments the iRNA agent silences a component of the complement system, e.g., C3, C5, C3aR, C5aR, C3 convertase, C5 convertase.
In particularly preferred embodiments the iRNA agent silences a chemokine or receptor thereof, e.g., TNFI, TNFJ, IL-1I, IL-1J, IL-2, IL-2R, IL-4, IL-4R, IL-5, IL-6, IL-8, TNFRI, TNFRII, IgE, SCYA11, CCR3.
In other embodiments the iRNA agent silences GCSF, Gro1, Gro2, Gro3, PF4, MIG, Pro-Platelet Basic Protein (PPBP), MIP-1I, MIP-1J, RANTES, MCP-1, MCP-2, MCP-3, CMBKR1, CMBKR2, CMBKR3, CMBKR5, AIF-1, I-309.
In one aspect, the invention features, a method of treating a subject, e.g., a human, at risk for or afflicted with acute pain or chronic pain. The method includes:
providing an iRNA agent, which iRNA is homologous to and can silence, e.g., by cleavage, a gene which mediates the processing of pain;
administering the iRNA to a subject,
thereby treating the subject.
In particularly preferred embodiments the iRNA agent silences a component of an ion channel.
In particularly preferred embodiments the iRNA agent silences a neurotransmitter receptor or ligand.
In one aspect, the invention features, a method of treating a subject, e.g., a human, at risk for or afflicted with a neurological disease or disorder. The method includes:
providing an iRNA agent which iRNA is homologous to and can silence, e.g., by cleavage, a gene which mediates a neurological disease or disorder;
administering the to a subject,
thereby treating the subject.
In a preferred embodiment the disease or disorder is Alzheimer Disease or Parkinson Disease.
In particularly preferred embodiments the iRNA agent silences an amyloid-family gene, e.g., APP; a presenilin gene, e.g., PSEN1 and PSEN2, or I-synuclein.
In a preferred embodiment the disease or disorder is a neurodegenerative trinucleotide repeat disorder, e.g., Huntington disease, dentatorubral pallidoluysian atrophy or a spinocerebellar ataxia, e.g., SCA1, SCA2, SCA3 (Machado-Joseph disease), SCA7 or SCA8.
In particularly preferred embodiments the iRNA agent silences HD, DRPLA, SCA1, SCA2, MJD1, CACNL1A4, SCA7, SCA8.
The loss of heterozygosity (LOH) can result in hemizygosity for sequence, e.g., genes, in the area of LOH. This can result in a significant genetic difference between normal and disease-state cells, e.g., cancer cells, and provides a useful difference between normal and disease-state cells, e.g., cancer cells. This difference can arise because a gene or other sequence is heterozygous in euploid cells but is hemizygous in cells having LOH. The regions of LOH will often include a gene, the loss of which promotes unwanted proliferation, e.g., a tumor suppressor gene, and other sequences including, e.g., other genes, in some cases a gene which is essential for normal function, e.g., growth. Methods of the invention rely, in part, on the specific cleavage or silencing of one allele of an essential gene with an iRNA agent of the invention. The iRNA agent is selected such that it targets the single allele of the essential gene found in the cells having LOH but does not silence the other allele, which is present in cells which do not show LOH. In essence, it discriminates between the two alleles, preferentially silencing the selected allele. In essence polymorphisms, e.g., SNPs of essential genes that are affected by LOH, are used as a target for a disorder characterized by cells having LOH, e.g., cancer cells having LOH.
E.g., one of ordinary skill in the art can identify essential genes which are in proximity to tumor suppressor genes, and which are within a LOH region which includes the tumor suppressor gene. The gene encoding the large subunit of human RNA polymerase II, POLR2A, a gene located in close proximity to the tumor suppressor gene p53, is such a gene. It frequently occurs within a region of LOH in cancer cells. Other genes that occur within LOH regions and are lost in many cancer cell types include the group comprising replication protein A 70-kDa subunit, replication protein A 32-kD, ribonucleotide reductase, thymidilate synthase, TATA associated factor 2H, ribosomal protein S14, eukaryotic initiation factor 5A, alanyl tRNA synthetase, cysteinyl tRNA synthetase, NaK ATPase, alpha-1 subunit, and transferrin receptor.
Accordingly, the invention features, a method of treating a disorder characterized by LOH, e.g., cancer. The method includes:
optionally, determining the genotype of the allele of a gene in the region of LOH and preferably determining the genotype of both alleles of the gene in a normal cell;
providing an iRNA agent which preferentially cleaves or silences the allele found in the LOH cells;
administerning the iRNA to the subject,
thereby treating the disorder.
The invention also includes a iRNA agent disclosed herein, e.g, an iRNA agent which can preferentially silence, e.g., cleave, one allele of a polymorphic gene
In another aspect, the invention provides a method of cleaving or silencing more than one gene with an iRNA agent. In these embodiments the iRNA agent is selected so that it has sufficient homology to a sequence found in more than one gene. For example, the sequence AAGCTGGCCCTGGACATGGAGAT (SEQ ID NO:6736) is conserved between mouse lamin B1, lamin B2, keratin complex 2-gene 1 and lamin A/C. Thus an iRNA agent targeted to this sequence would effectively silence the entire collection of genes.
The invention also includes an iRNA agent disclosed herein, which can silence more than one gene.
Route of Delivery
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. A composition that includes a iRNA can be delivered to a subject by a variety of routes. Exemplary routes include: intravenous, topical, rectal, anal, vaginal, nasal, pulmonary, ocular.
The iRNA molecules of the invention can be incorporated into pharmaceutical compositions suitable for administration. Such compositions typically include one or more species of iRNA and a pharmaceutically acceptable carrier. As used herein the language “pharmaceutically acceptable carrier” is intended to include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, compatible with pharmaceutical administration. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active compound, use thereof in the compositions is contemplated. Supplementary active compounds can also be incorporated into the compositions.
The pharmaceutical compositions of the present invention may be administered in a number of ways depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration may be topical (including ophthalmic, vaginal, rectal, intranasal, transdermal), oral or parenteral. Parenteral administration includes intravenous drip, subcutaneous, intraperitoneal or intramuscular injection, or intrathecal or intraventricular administration.
The route and site of administration may be chosen to enhance targeting. For example, to target muscle cells, intramuscular injection into the muscles of interest would be a logical choice. Lung cells might be targeted by administering the iRNA in aerosol form. The vascular endothelial cells could be targeted by coating a balloon catheter with the iRNA and mechanically introducing the DNA.
Formulations for topical administration may include transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders. Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable. Coated condoms, gloves and the like may also be useful.
Compositions for oral administration include powders or granules, suspensions or solutions in water, syrups, elixirs or non-aqueous media, tablets, capsules, lozenges, or troches. In the case of tablets, carriers that can be used include lactose, sodium citrate and salts of phosphoric acid. Various disintegrants such as starch, and lubricating agents such as magnesium stearate, sodium lauryl sulfate and talc, are commonly used in tablets. For oral administration in capsule form, useful diluents are lactose and high molecular weight polyethylene glycols. When aqueous suspensions are required for oral use, the nucleic acid compositions can be combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring agents can be added.
Compositions for intrathecal or intraventricular administration may include sterile aqueous solutions which may also contain buffers, diluents and other suitable additives.
Formulations for parenteral administration may include sterile aqueous solutions which may also contain buffers, diluents and other suitable additives. Intraventricular injection may be facilitated by an intraventricular catheter, for example, attached to a reservoir. For intravenous use, the total concentration of solutes should be controlled to render the preparation isotonic.
For ocular administration, ointments or droppable liquids may be delivered by ocular delivery systems known to the art such as applicators or eye droppers. Such compositions can include mucomimetics such as hyaluronic acid, chondroitin sulfate, hydroxypropyl methylcellulose or poly(vinyl alcohol), preservatives such as sorbic acid, EDTA or benzylchronium chloride, and the usual quantities of diluents and/or carriers.
Topical Delivery
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. In a preferred embodiment, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) is delivered to a subject via topical administration. “Topical administration” refers to the delivery to a subject by contacting the formulation directly to a surface of the subject. The most common form of topical delivery is to the skin, but a composition disclosed herein can also be directly applied to other surfaces of the body, e.g., to the eye, a mucous membrane, to surfaces of a body cavity or to an internal surface. As mentioned above, the most common topical delivery is to the skin. The term encompasses several routes of administration including, but not limited to, topical and transdermal. These modes of administration typically include penetration of the skin's permeability barrier and efficient delivery to the target tissue or stratum. Topical administration can be used as a means to penetrate the epidermis and dermis and ultimately achieve systemic delivery of the composition. Topical administration can also be used as a means to selectively deliver oligonucleotides to the epidermis or dermis of a subject, or to specific strata thereof, or to an underlying tissue.
The term “skin,” as used herein, refers to the epidermis and/or dermis of an animal. Mammalian skin consists of two major, distinct layers. The outer layer of the skin is called the epidermis. The epidermis is comprised of the stratum corneum, the stratum granulosum, the stratum spinosum, and the stratum basale, with the stratum corneum being at the surface of the skin and the stratum basale being the deepest portion of the epidermis. The epidermis is between 50 μm and 0.2 mm thick, depending on its location on the body.
Beneath the epidermis is the dermis, which is significantly thicker than the epidermis. The dermis is primarily composed of collagen in the form of fibrous bundles. The collagenous bundles provide support for, inter alia, blood vessels, lymph capillaries, glands, nerve endings and immunologically active cells.
One of the major functions of the skin as an organ is to regulate the entry of substances into the body. The principal permeability barrier of the skin is provided by the stratum corneum, which is formed from many layers of cells in various states of differentiation. The spaces between cells in the stratum corneum is filled with different lipids arranged in lattice-like formations that provide seals to further enhance the skins permeability barrier.
The permeability barrier provided by the skin is such that it is largely impermeable to molecules having molecular weight greater than about 750 Da. For larger molecules to cross the skin's permeability barrier, mechanisms other than normal osmosis must be used.
Several factors determine the permeability of the skin to administered agents. These factors include the characteristics of the treated skin, the characteristics of the delivery agent, interactions between both the drug and delivery agent and the drug and skin, the dosage of the drug applied, the form of treatment, and the post treatment regimen. To selectively target the epidermis and dermis, it is sometimes possible to formulate a composition that comprises one or more penetration enhancers that will enable penetration of the drug to a preselected stratum.
Transdermal delivery is a valuable route for the administration of lipid soluble therapeutics. The dermis is more permeable than the epidermis and therefore absorption is much more rapid through abraded, burned or denuded skin. Inflammation and other physiologic conditions that increase blood flow to the skin also enhance transdermal adsorption. Absorption via this route may be enhanced by the use of an oily vehicle (inunction) or through the use of one or more penetration enhancers. Other effective ways to deliver a composition disclosed herein via the transdermal route include hydration of the skin and the use of controlled release topical patches. The transdermal route provides a potentially effective means to deliver a composition disclosed herein for systemic and/or local therapy.
In addition, iontophoresis (transfer of ionic solutes through biological membranes under the influence of an electric field) (Lee et al., Critical Reviews in Therapeutic Drug Carrier Systems, 1991, p. 163), phonophoresis or sonophoresis (use of ultrasound to enhance the absorption of various therapeutic agents across biological membranes, notably the skin and the cornea) (Lee et al., Critical Reviews in Therapeutic Drug Carrier Systems, 1991, p. 166), and optimization of vehicle characteristics relative to dose position and retention at the site of administration (Lee et al., Critical Reviews in Therapeutic Drug Carrier Systems, 1991, p. 168) may be useful methods for enhancing the transport of topically applied compositions across skin and mucosal sites.
The compositions and methods provided may also be used to examine the function of various proteins and genes in vitro in cultured or preserved dermal tissues and in animals. The invention can be thus applied to examine the function of any gene. The methods of the invention can also be used therapeutically or prophylactically. For example, for the treatment of animals that are known or suspected to suffer from diseases such as psoriasis, lichen planus, toxic epidermal necrolysis, ertythema multiforme, basal cell carcinoma, squamous cell carcinoma, malignant melanoma, Paget's disease, Kaposi's sarcoma, pulmonary fibrosis, Lyme disease and viral, fungal and bacterial infections of the skin.
Pulmonary Delivery
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. A composition that includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) can be administered to a subject by pulmonary delivery. Pulmonary delivery compositions can be delivered by inhalation by the patient of a dispersion so that the composition, preferably iRNA, within the dispersion can reach the lung where it can be readily absorbed through the alveolar region directly into blood circulation. Pulmonary delivery can be effective both for systemic delivery and for localized delivery to treat diseases of the lungs.
Pulmonary delivery can be achieved by different approaches, including the use of nebulized, aerosolized, micellular and dry powder-based formulations. Delivery can be achieved with liquid nebulizers, aerosol-based inhalers, and dry powder dispersion devices. Metered-dose devices are preferred. One of the benefits of using an atomizer or inhaler is that the potential for contamination is minimized because the devices are self contained. Dry powder dispersion devices, for example, deliver drugs that may be readily formulated as dry powders. A iRNA composition may be stably stored as lyophilized or spray-dried powders by itself or in combination with suitable powder carriers. The delivery of a composition for inhalation can be mediated by a dosing timing element which can include a timer, a dose counter, time measuring device, or a time indicator which when incorporated into the device enables dose tracking, compliance monitoring, and/or dose triggering to a patient during administration of the aerosol medicament.
The term “powder” means a composition that consists of finely dispersed solid particles that are free flowing and capable of being readily dispersed in an inhalation device and subsequently inhaled by a subject so that the particles reach the lungs to permit penetration into the alveoli. Thus, the powder is said to be “respirable.” Preferably the average particle size is less than about 10 μm in diameter preferably with a relatively uniform spheroidal shape distribution. More preferably the diameter is less than about 7.5 μm and most preferably less than about 5.0 μm. Usually the particle size distribution is between about 0.1 μm and about 5 μm in diameter, particularly about 0.3 μm to about 5 μm.
The term “dry” means that the composition has a moisture content below about 10% by weight (% w) water, usually below about 5% w and preferably less it than about 3% w. A dry composition can be such that the particles are readily dispersible in an inhalation device to form an aerosol.
The term “therapeutically effective amount” is the amount present in the composition that is needed to provide the desired level of drug in the subject to be treated to give the anticipated physiological response.
The term “physiologically effective amount” is that amount delivered to a subject to give the desired palliative or curative effect.
The term “pharmaceutically acceptable carrier” means that the carrier can be taken into the lungs with no significant adverse toxicological effects on the lungs.
The types of pharmaceutical excipients that are useful as carrier include stabilizers such as human serum albumin (HSA), bulking agents such as carbohydrates, amino acids and polypeptides; pH adjusters or buffers; salts such as sodium chloride; and the like. These carriers may be in a crystalline or amorphous form or may be a mixture of the two.
Bulking agents that are particularly valuable include compatible carbohydrates, polypeptides, amino acids or combinations thereof. Suitable carbohydrates include monosaccharides such as galactose, D-mannose, sorbose, and the like; disaccharides, such as lactose, trehalose, and the like; cyclodextrins, such as 2-hydroxypropyl-.beta.-cyclodextrin; and polysaccharides, such as raffinose, maltodextrins, dextrans, and the like; alditols, such as mannitol, xylitol, and the like. A preferred group of carbohydrates includes lactose, threhalose, raffinose maltodextrins, and mannitol. Suitable polypeptides include aspartame. Amino acids include alanine and glycine, with glycine being preferred.
Additives, which are minor components of the composition of this invention, may be included for conformational stability during spray drying and for improving dispersibility of the powder. These additives include hydrophobic amino acids such as tryptophan, tyrosine, leucine, phenylalanine, and the like.
Suitable pH adjusters or buffers include organic salts prepared from organic acids and bases, such as sodium citrate, sodium ascorbate, and the like; sodium citrate is preferred.
Pulmonary administration of a micellar iRNA formulation may be achieved through metered dose spray devices with propellants such as tetrafluoroethane, heptafluoroethane, dimethylfluoropropane, tetrafluoropropane, butane, isobutane, dimethyl ether and other non-CFC and CFC propellants.
Oral or Nasal Delivery
For ease of exposition the formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. Both the oral and nasal membranes offer advantages over other routes of administration. For example, drugs administered through these membranes have a rapid onset of action, provide therapeutic plasma levels, avoid first pass effect of hepatic metabolism, and avoid exposure of the drug to the hostile gastrointestinal (GI) environment. Additional advantages include easy access to the membrane sites so that the drug can be applied, localized and removed easily.
In oral delivery, compositions can be targeted to a surface of the oral cavity, e.g., to sublingual mucosa which includes the membrane of ventral surface of the tongue and the floor of the mouth or the buccal mucosa which constitutes the lining of the cheek. The sublingual mucosa is relatively permeable thus giving rapid absorption and acceptable bioavailability of many drugs. Further, the sublingual mucosa is convenient, acceptable and easily accessible.
The ability of molecules to permeate through the oral mucosa appears to be related to molecular size, lipid solubility and peptide protein ionization. Small molecules, less than 1000 daltons appear to cross mucosa rapidly. As molecular size increases, the permeability decreases rapidly. Lipid soluble compounds are more permeable than non-lipid soluble molecules. Maximum absorption occurs when molecules are un-ionized or neutral in electrical charges. Therefore charged molecules present the biggest challenges to absorption through the oral mucosae.
A pharmaceutical composition of iRNA may also be administered to the buccal cavity of a human being by spraying into the cavity, without inhalation, from a metered dose spray dispenser, a mixed micellar pharmaceutical formulation as described above and a propellant. In one embodiment, the dispenser is first shaken prior to spraying the pharmaceutical formulation and propellant into the buccal cavity.
Devices
For ease of exposition the devices, formulations, compositions and methods in this section are discussed largely with regard to unmodified iRNA agents. It should be understood, however, that these devices, formulations, compositions and methods can be practiced with other iRNA agents, e.g., modified iRNA agents, and such practice is within the invention. An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) can be disposed on or in a device, e.g., a device which implanted or otherwise placed in a subject. Exemplary devices include devices which are introduced into the vasculature, e.g., devices inserted into the lumen of a vascular tissue, or which devices themselves form a part of the vasculature, including stents, catheters, heart valves, and other vascular devices. These devices, e.g., catheters or stents, can be placed in the vasculature of the lung, heart, or leg.
Other devices include non-vascular devices, e.g., devices implanted in the peritoneum, or in organ or glandular tissue, e.g., artificial organs. The device can release a therapeutic substance in addition to a iRNA, e.g., a device can release insulin.
Other devices include artificial joints, e.g., hip joints, and other orthopedic implants.
In one embodiment, unit doses or measured doses of a composition that includes iRNA are dispensed by an implanted device. The device can include a sensor that monitors a parameter within a subject. For example, the device can include pump, e.g., and, optionally, associated electronics.
Tissue, e.g., cells or organs can be treated with An iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) ex vivo and then administered or implanted in a subject.
The tissue can be autologous, allogeneic, or xenogeneic tissue. E.g., tissue can be treated to reduce graft v. host disease. In other embodiments, the tissue is allogeneic and the tissue is treated to treat a disorder characterized by unwanted gene expression in that tissue. E.g., tissue, e.g., hematopoietic cells, e.g., bone marrow hematopoietic cells, can be treated to inhibit unwanted cell proliferation.
Introduction of treated tissue, whether autologous or transplant, can be combined with other therapies.
In some implementations, the iRNA treated cells are insulated from other cells, e.g., by a semi-permeable porous barrier that prevents the cells from leaving the implant, but enables molecules from the body to reach the cells and molecules produced by the cells to enter the body. In one embodiment, the porous barrier is formed from alginate.
In one embodiment, a contraceptive device is coated with or contains an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). Exemplary devices include condoms, diaphragms, IUD (implantable uterine devices, sponges, vaginal sheaths, and birth control devices. In one embodiment, the iRNA is chosen to inactive sperm or egg. In another embodiment, the iRNA is chosen to be complementary to a viral or pathogen RNA, e.g., an RNA of an STD. In some instances, the iRNA composition can include a spermicide.
Dosage
In one aspect, the invention features a method of administering an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, to a subject (e.g., a human subject). The method includes administering a unit dose of the iRNA agent, e.g., a sRNA agent, e.g., double stranded sRNA agent that (a) the double-stranded part is 19-25 nucleotides (nt) long, preferably 21-23 nt, (b) is complementary to a target RNA (e.g., an endogenous or pathogen target RNA), and, optionally, (c) includes at least one 3′ overhang 1-5 nucleotide long. In one embodiment, the unit dose is less than 1.4 mg per kg of bodyweight, or less than 10, 5, 2, 1, 0.5, 0.1, 0.05, 0.01, 0.005, 0.001, 0.0005, 0.0001, 0.00005 or 0.00001 mg per kg of bodyweight, and less than 200 nmole of RNA agent (e.g. about 4.4×1016 copies) per kg of bodyweight, or less than 1500, 750, 300, 150, 75, 15, 7.5, 1.5, 0.75, 0.15, 0.075, 0.015, 0.0075, 0.0015, 0.00075, 0.00015 nmole of RNA agent per kg of bodyweight.
The defined amount can be an amount effective to treat or prevent a disease or disorder, e.g., a disease or disorder associated with the target RNA. The unit dose, for example, can be administered by injection (e.g., intravenous or intramuscular), an inhaled dose, or a topical application. Particularly preferred dosages are less than 2, 1, or 0.1 mg/kg of body weight.
In a preferred embodiment, the unit dose is administered less frequently than once a day, e.g., less than every 2, 4, 8 or 30 days. In another embodiment, the unit dose is not administered with a frequency (e.g., not a regular frequency). For example, the unit dose may be administered a single time.
In one embodiment, the effective dose is administered with other traditional therapeutic modalities. In one embodiment, the subject has a viral infection and the modality is an antiviral agent other than an iRNA agent, e.g., other than a double-stranded iRNA agent, or sRNA agent. In another embodiment, the subject has atherosclerosis and the effective dose of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, is administered in combination with, e.g., after surgical intervention, e.g., angioplasty.
In one embodiment, a subject is administered an initial dose and one or more maintenance doses of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). The maintenance dose or doses are generally lower than the initial dose, e.g., one-half less of the initial dose. A maintenance regimen can include treating the subject with a dose or doses ranging from 0.01 μg to 1.4 mg/kg of body weight per day, e.g., 10, 1, 0.1, 0.01, 0.001, or 0.00001 mg per kg of bodyweight per day. The maintenance doses are preferably administered no more than once every 5, 10, or 30 days. Further, the treatment regimen may last for a period of time which will vary depending upon the nature of the particular disease, its severity and the overall condition of the patient. In preferred embodiments the dosage may be delivered no more than once per day, e.g., no more than once per 24, 36, 48, or more hours, e.g., no more than once for every 5 or 8 days. Following treatment, the patient can be monitored for changes in his condition and for alleviation of the symptoms of the disease state. The dosage of the compound may either be increased in the event the patient does not respond significantly to current dosage levels, or the dose may be decreased if an alleviation of the symptoms of the disease state is observed, if the disease state has been ablated, or if undesired side-effects are observed.
The effective dose can be administered in a single dose or in two or more doses, as desired or considered appropriate under the specific circumstances. If desired to facilitate repeated or frequent infusions, implantation of a delivery device, e.g., a pump, semi-permanent stent (e.g., intravenous, intraperitoneal, intracisternal or intracapsular), or reservoir may be advisable.
In one embodiment, the iRNA agent pharmaceutical composition includes a plurality of iRNA agent species. In another embodiment, the iRNA agent species has sequences that are non-overlapping and non-adjacent to another species with respect to a naturally occurring target sequence. In another embodiment, the plurality of iRNA agent species is specific for different naturally occurring target genes. In another embodiment, the iRNA agent is allele specific.
In some cases, a patient is treated with a iRNA agent in conjunction with other therapeutic modalities. For example, a patient being treated for a viral disease, e.g. an HIV associated disease (e.g., AIDS), may be administered a iRNA agent specific for a target gene essential to the virus in conjunction with a known antiviral agent (e.g., a protease inhibitor or reverse transcriptase inhibitor). In another example, a patient being treated for cancer may be administered a iRNA agent specific for a target essential for tumor cell proliferation in conjunction with a chemotherapy.
Following successful treatment, it may be desirable to have the patient undergo maintenance therapy to prevent the recurrence of the disease state, wherein the compound of the invention is administered in maintenance doses, ranging from 0.01 μg to 100 g per kg of body weight (see U.S. Pat. No. 6,107,094).
The concentration of the iRNA agent composition is an amount sufficient to be effective in treating or preventing a disorder or to regulate a physiological condition in humans. The concentration or amount of iRNA agent administered will depend on the parameters determined for the agent and the method of administration, e.g. nasal, buccal, pulmonary. For example, nasal formulations tend to require much lower concentrations of some ingredients in order to avoid irritation or burning of the nasal passages. It is sometimes desirable to dilute an oral formulation up to 10-100 times in order to provide a suitable nasal formulation.
Certain factors may influence the dosage required to effectively treat a subject, including but not limited to the severity of the disease or disorder, previous treatments, the general health and/or age of the subject, and other diseases present. Moreover, treatment of a subject with a therapeutically effective amount of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) can include a single treatment or, preferably, can include a series of treatments. It will also be appreciated that the effective dosage of a iRNA agent such as a sRNA agent used for treatment may increase or decrease over the course of a particular treatment. Changes in dosage may result and become apparent from the results of diagnostic assays as described herein. For example, the subject can be monitored after administering a iRNA agent composition. Based on information from the monitoring, an additional amount of the iRNA agent composition can be administered.
Dosing is dependent on severity and responsiveness of the disease condition to be treated, with the course of treatment lasting from several days to several months, or until a cure is effected or a diminution of disease state is achieved. Optimal dosing schedules can be calculated from measurements of drug accumulation in the body of the patient. Persons of ordinary skill can easily determine optimum dosages, dosing methodologies and repetition rates. Optimum dosages may vary depending on the relative potency of individual compounds, and can generally be estimated based on EC50s found to be effective in in vitro and in vivo animal models. In some embodiments, the animal models include transgenic animals that express a human gene, e.g. a gene that produces a target RNA. The transgenic animal can be deficient for the corresponding endogenous RNA. In another embodiment, the composition for testing includes a iRNA agent that is complementary, at least in an internal region, to a sequence that is conserved between the target RNA in the animal model and the target RNA in a human.
The inventors have discovered that iRNA agents described herein can be administered to mammals, particularly large mammals such as nonhuman primates or humans in a number of ways.
In one embodiment, the administration of the iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, composition is parenteral, e.g. intravenous (e.g., as a bolus or as a diffusible infusion), intradermal, intraperitoneal, intramuscular, intrathecal, intraventricular, intracranial, subcutaneous, transmucosal, buccal, sublingual, endoscopic, rectal, oral, vaginal, topical, pulmonary, intranasal, urethral or ocular. Administration can be provided by the subject or by another person, e.g., a health care provider. The medication can be provided in measured doses or in a dispenser which delivers a metered dose. Selected modes of delivery are discussed in more detail below.
The invention provides methods, compositions, and kits, for rectal administration or delivery of iRNA agents described herein.
Accordingly, an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes a an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) described herein, e.g., a therapeutically effective amount of a iRNA agent described herein, e.g., a iRNA agent having a double stranded region of less than 40, and preferably less than 30 nucleotides and having one or two 1-3 nucleotide single strand 3′ overhangs can be administered rectally, e.g., introduced through the rectum into the lower or upper colon. This approach is particularly useful in the treatment of, inflammatory disorders, disorders characterized by unwanted cell proliferation, e.g., polyps, or colon cancer.
The medication can be delivered to a site in the colon by introducing a dispensing device, e.g., a flexible, camera-guided device similar to that used for inspection of the colon or removal of polyps, which includes means for delivery of the medication.
The rectal administration of the iRNA agent is by means of an enema. The iRNA agent of the enema can be dissolved in a saline or buffered solution. The rectal administration can also by means of a suppository, which can include other ingredients, e.g., an excipient, e.g., cocoa butter or hydropropylmethylcellulose.
Any of the iRNA agents described herein can be administered orally, e.g., in the form of tablets, capsules, gel capsules, lozenges, troches or liquid syrups. Further, the composition can be applied topically to a surface of the oral cavity.
Any of the iRNA agents described herein can be administered buccally. For example, the medication can be sprayed into the buccal cavity or applied directly, e.g., in a liquid, solid, or gel form to a surface in the buccal cavity. This administration is particularly desirable for the treatment of inflammations of the buccal cavity, e.g., the gums or tongue, e.g., in one embodiment, the buccal administration is by spraying into the cavity, e.g., without inhalation, from a dispenser, e.g., a metered dose spray dispenser that dispenses the pharmaceutical composition and a propellant.
Any of the iRNA agents described herein can be administered to ocular tissue. For example, the medications can be applied to the surface of the eye or nearby tissue, e.g., the inside of the eyelid. They can be applied topically, e.g., by spraying, in drops, as an eyewash, or an ointment. Administration can be provided by the subject or by another person, e.g., a health care provider. The medication can be provided in measured doses or in a dispenser which delivers a metered dose. The medication can also be administered to the interior of the eye, and can be introduced by a needle or other delivery device which can introduce it to a selected area or structure. Ocular treatment is particularly desirable for treating inflammation of the eye or nearby tissue.
Any of the iRNA agents described herein can be administered directly to the skin. For example, the medication can be applied topically or delivered in a layer of the skin, e.g., by the use of a microneedle or a battery of microneedles which penetrate into the skin, but preferably not into the underlying muscle tissue. Administration of the iRNA agent composition can be topical. Topical applications can, for example, deliver the composition to the dermis or epidermis of a subject. Topical administration can be in the form of transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids or powders. A composition for topical administration can be formulated as a liposome, micelle, emulsion, or other lipophilic molecular assembly. The transdermal administration can be applied with at least one penetration enhancer, such as iontophoresis, phonophoresis, and sonophoresis.
Any of the iRNA agents described herein can be administered to the pulmonary system. Pulmonary administration can be achieved by inhalation or by the introduction of a delivery device into the pulmonary system, e.g., by introducing a delivery device which can dispense the medication. A preferred method of pulmonary delivery is by inhalation. The medication can be provided in a dispenser which delivers the medication, e.g., wet or dry, in a form sufficiently small such that it can be inhaled. The device can deliver a metered dose of medication. The subject, or another person, can administer the medication.
Pulmonary delivery is effective not only for disorders which directly affect pulmonary tissue, but also for disorders which affect other tissue.
iRNA agents can be formulated as a liquid or nonliquid, e.g., a powder, crystal, or aerosol for pulmonary delivery.
Any of the iRNA agents described herein can be administered nasally. Nasal administration can be achieved by introduction of a delivery device into the nose, e.g., by introducing a delivery device which can dispense the medication. Methods of nasal delivery include spray, aerosol, liquid, e.g., by drops, or by topical administration to a surface of the nasal cavity. The medication can be provided in a dispenser with delivery of the medication, e.g., wet or dry, in a form sufficiently small such that it can be inhaled. The device can deliver a metered dose of medication. The subject, or another person, can administer the medication.
Nasal delivery is effective not only for disorders which directly affect nasal tissue, but also for disorders which affect other tissue
iRNA agents can be formulated as a liquid or nonliquid, e.g., a powder, crystal, or for nasal delivery.
An iRNA agent can be packaged in a viral natural capsid or in a chemically or enzymatically produced artificial capsid or structure derived therefrom.
The dosage of a pharmaceutical composition including a iRNA agent can be administered in order to alleviate the symptoms of a disease state, e.g., cancer or a cardiovascular disease. A subject can be treated with the pharmaceutical composition by any of the methods mentioned above.
Gene expression in a subject can be modulated by administering a pharmaceutical composition including an iRNA agent.
A subject can be treated by administering a defined amount of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent) composition that is in a powdered form, e.g., a collection of microparticles, such as crystalline particles. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
A subject can be treated by administering a defined amount of an iRNA agent composition that is prepared by a method that includes spray-drying, i.e. atomizing a liquid solution, emulsion, or suspension, immediately exposing the droplets to a drying gas, and collecting the resulting porous powder particles. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
The iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), can be provided in a powdered, crystallized or other finely divided form, with or without a carrier, e.g., a micro- or nano-particle suitable for inhalation or other pulmonary delivery. This can include providing an aerosol preparation, e.g., an aerosolized spray-dried composition. The aerosol composition can be provided in and/or dispensed by a metered dose delivery device.
The subject can be treated for a condition treatable by inhalation, e.g., by aerosolizing a spray-dried iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) composition and inhaling the aerosolized composition. The iRNA agent can be an sRNA. The composition can include a plurality of iRNA agents, e.g., specific for one or more different endogenous target RNAs. The method can include other features described herein.
A subject can be treated by, for example, administering a composition including an effective/defined amount of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), wherein the composition is prepared by a method that includes spray-drying, lyophilization, vacuum drying, evaporation, fluid bed drying, or a combination of these techniques
In another aspect, the invention features a method that includes: evaluating a parameter related to the abundance of a transcript in a cell of a subject; comparing the evaluated parameter to a reference value; and if the evaluated parameter has a preselected relationship to the reference value (e.g., it is greater), administering a iRNA agent (or a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes a iRNA agent or precursor thereof) to the subject. In one embodiment, the iRNA agent includes a sequence that is complementary to the evaluated transcript. For example, the parameter can be a direct measure of transcript levels, a measure of a protein level, a disease or disorder symptom or characterization (e.g., rate of cell proliferation and/or tumor mass, viral load,)
In another aspect, the invention features a method that includes: administering a first amount of a composition that comprises an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) to a subject, wherein the iRNA agent includes a strand substantially complementary to a target nucleic acid; evaluating an activity associated with a protein encoded by the target nucleic acid; wherein the evaluation is used to determine if a second amount should be administered. In a preferred embodiment the method includes administering a second amount of the composition, wherein the timing of administration or dosage of the second amount is a function of the evaluating. The method can include other features described herein.
In another aspect, the invention features a method of administering a source of a double-stranded iRNA agent (ds iRNA agent) to a subject. The method includes administering or implanting a source of a ds iRNA agent, e.g., a sRNA agent, that (a) includes a double-stranded region that is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to a target RNA (e.g., an endogenous RNA or a pathogen RNA), and, optionally, (c) includes at least one 3′ overhang 1-5 nt long. In one embodiment, the source releases ds iRNA agent over time, e.g. the source is a controlled or a slow release source, e.g., a microparticle that gradually releases the ds iRNA agent. In another embodiment, the source is a pump, e.g., a pump that includes a sensor or a pump that can release one or more unit doses.
In one aspect, the invention features a pharmaceutical composition that includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) including a nucleotide sequence complementary to a target RNA, e.g., substantially and/or exactly complementary. The target RNA can be a transcript of an endogenous human gene. In one embodiment, the iRNA agent (a) is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to an endogenous target RNA, and, optionally, (c) includes at least one 3′ overhang 1-5 nt long. In one embodiment, the pharmaceutical composition can be an emulsion, microemulsion, cream, jelly, or liposome.
In one example the pharmaceutical composition includes an iRNA agent mixed with a topical delivery agent. The topical delivery agent can be a plurality of microscopic vesicles. The microscopic vesicles can be liposomes. In a preferred embodiment the liposomes are cationic liposomes.
In another aspect, the pharmaceutical composition includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) admixed with a topical penetration enhancer. In one embodiment, the topical penetration enhancer is a fatty acid. The fatty acid can be arachidonic acid, oleic acid, lauric acid, caprylic acid, capric acid, myristic acid, palmitic acid, stearic acid, linoleic acid, linolenic acid, dicaprate, tricaprate, monolein, dilaurin, glyceryl 1-monocaprate, 1-dodecylazacycloheptan-2-one, an acylcarnitine, an acylcholine, or a C1-10 alkyl ester, monoglyceride, diglyceride or pharmaceutically acceptable salt thereof.
In another embodiment, the topical penetration enhancer is a bile salt. The bile salt can be cholic acid, dehydrocholic acid, deoxycholic acid, glucholic acid, glycholic acid, glycodeoxycholic acid, taurocholic acid, taurodeoxycholic acid, chenodeoxycholic acid, ursodeoxycholic acid, sodium tauro-24,25-dihydro-fusidate, sodium glycodihydrofusidate, polyoxyethylene-9-lauryl ether or a pharmaceutically acceptable salt thereof.
In another embodiment, the penetration enhancer is a chelating agent. The chelating agent can be EDTA, citric acid, a salicyclate, a N-acyl derivative of collagen, laureth-9, an N-amino acyl derivative of a beta-diketone or a mixture thereof.
In another embodiment, the penetration enhancer is a surfactant, e.g., an ionic or nonionic surfactant. The surfactant can be sodium lauryl sulfate, polyoxyethylene-9-lauryl ether, polyoxyethylene-20-cetyl ether, a perfluorchemical emulsion or mixture thereof.
In another embodiment, the penetration enhancer can be selected from a group consisting of unsaturated cyclic ureas, 1-alkyl-alkones, 1-alkenylazacyclo-alakanones, steroidal anti-inflammatory agents and mixtures thereof. In yet another embodiment the penetration enhancer can be a glycol, a pyrrol, an azone, or a terpenes.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a form suitable for oral delivery. In one embodiment, oral delivery can be used to deliver an iRNA agent composition to a cell or a region of the gastro-intestinal tract, e.g., small intestine, colon (e.g., to treat a colon cancer), and so forth. The oral delivery form can be tablets, capsules or gel capsules. In one embodiment, the iRNA agent of the pharmaceutical composition modulates expression of a cellular adhesion protein, modulates a rate of cellular proliferation, or has biological activity against eukaryotic pathogens or retroviruses. In another embodiment, the pharmaceutical composition includes an enteric material that substantially prevents dissolution of the tablets, capsules or gel capsules in a mammalian stomach. In a preferred embodiment the enteric material is a coating. The coating can be acetate phthalate, propylene glycol, sorbitan monoleate, cellulose acetate trimellitate, hydroxy propyl methylcellulose phthalate or cellulose acetate phthalate.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a penetration enhancer. The penetration enhancer can be a bile salt or a fatty acid. The bile salt can be ursodeoxycholic acid, chenodeoxycholic acid, and salts thereof. The fatty acid can be capric acid, lauric acid, and salts thereof.
In another embodiment, the oral dosage form of the pharmaceutical composition includes an excipient. In one example the excipient is polyethyleneglycol. In another example the excipient is precirol.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a plasticizer. The plasticizer can be diethyl phthalate, triacetin dibutyl sebacate, dibutyl phthalate or triethyl citrate.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent and a delivery vehicle. In one embodiment, the iRNA agent is (a) is 19-25 nucleotides long, preferably 21-23 nucleotides, (b) is complementary to an endogenous target RNA, and, optionally, (c) includes at least one 3′ overhang 1-5 nucleotides long.
In one embodiment, the delivery vehicle can deliver an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) to a cell by a topical route of administration. The delivery vehicle can be microscopic vesicles. In one example the microscopic vesicles are liposomes. In a preferred embodiment the liposomes are cationic liposomes. In another example the microscopic vesicles are micelles. In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in an injectable dosage form. In one embodiment, the injectable dosage form of the pharmaceutical composition includes sterile aqueous solutions or dispersions and sterile powders. In a preferred embodiment the sterile solution can include a diluent such as water; saline solution; fixed oils, polyethylene glycols, glycerin, or propylene glycol.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in oral dosage form. In one embodiment, the oral dosage form is selected from the group consisting of tablets, capsules and gel capsules. In another embodiment, the pharmaceutical composition includes an enteric material that substantially prevents dissolution of the tablets, capsules or gel capsules in a mammalian stomach. In a preferred embodiment the enteric material is a coating. The coating can be acetate phthalate, propylene glycol, sorbitan monoleate, cellulose acetate trimellitate, hydroxy propyl methyl cellulose phthalate or cellulose acetate phthalate. In one embodiment, the oral dosage form of the pharmaceutical composition includes a penetration enhancer, e.g., a penetration enhancer described herein.
In another embodiment, the oral dosage form of the pharmaceutical composition includes an excipient. In one example the excipient is polyethyleneglycol. In another example the excipient is precirol.
In another embodiment, the oral dosage form of the pharmaceutical composition includes a plasticizer. The plasticizer can be diethyl phthalate, triacetin dibutyl sebacate, dibutyl phthalate or triethyl citrate.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a rectal dosage form. In one embodiment, the rectal dosage form is an enema. In another embodiment, the rectal dosage form is a suppository.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a vaginal dosage form. In one embodiment, the vaginal dosage form is a suppository. In another embodiment, the vaginal dosage form is a foam, cream, or gel.
In one aspect, the invention features a pharmaceutical composition including an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) in a pulmonary or nasal dosage form. In one embodiment, the iRNA agent is incorporated into a particle, e.g., a macroparticle, e.g., a microsphere. The particle can be produced by spray drying, lyophilization, evaporation, fluid bed drying, vacuum drying, or a combination thereof. The microsphere can be formulated as a suspension, a powder, or an implantable solid.
In one aspect, the invention features a spray-dried iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof) composition suitable for inhalation by a subject, including: (a) a therapeutically effective amount of a iRNA agent suitable for treating a condition in the subject by inhalation; (b) a pharmaceutically acceptable excipient selected from the group consisting of carbohydrates and amino acids; and (c) optionally, a dispersibility-enhancing amount of a physiologically-acceptable, water-soluble polypeptide.
In one embodiment, the excipient is a carbohydrate. The carbohydrate can be selected from the group consisting of monosaccharides, disaccharides, trisaccharides, and polysaccharides. In a preferred embodiment the carbohydrate is a monosaccharide selected from the group consisting of dextrose, galactose, mannitol, D-mannose, sorbitol, and sorbose. In another preferred embodiment the carbohydrate is a disaccharide selected from the group consisting of lactose, maltose, sucrose, and trehalose.
In another embodiment, the excipient is an amino acid. In one embodiment, the amino acid is a hydrophobic amino acid. In a preferred embodiment the hydrophobic amino acid is selected from the group consisting of alanine, isoleucine, leucine, methionine, phenylalanine, proline, tryptophan, and valine. In yet another embodiment the amino acid is a polar amino acid. In a preferred embodiment the amino acid is selected from the group consisting of arginine, histidine, lysine, cysteine, glycine, glutamine, serine, threonine, tyrosine, aspartic acid and glutamic acid.
In one embodiment, the dispersibility-enhancing polypeptide is selected from the group consisting of human serum albumin, a-lactalbumin, trypsinogen, and polyalanine.
In one embodiment, the spray-dried iRNA agent composition includes particles having a mass median diameter (MMD) of less than 10 microns. In another embodiment, the spray-dried iRNA agent composition includes particles having a mass median diameter of less than 5 microns. In yet another embodiment the spray-dried iRNA agent composition includes particles having a mass median aerodynamic diameter (MMAD) of less than 5 microns.
In certain other aspects, the invention provides kits that include a suitable container containing a pharmaceutical formulation of an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof). In certain embodiments the individual components of the pharmaceutical formulation may be provided in one container. Alternatively, it may be desirable to provide the components of the pharmaceutical formulation separately in two or more containers, e.g., one container for an iRNA agent preparation, and at least another for a carrier compound. The kit may be packaged in a number of different configurations such as one or more containers in a single box. The different components can be combined, e.g., according to instructions provided with the kit. The components can be combined according to a method described herein, e.g., to prepare and administer a pharmaceutical composition. The kit can also include a delivery device.
In another aspect, the invention features a device, e.g., an implantable device, wherein the device can dispense or administer a composition that includes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, (e.g., a precursor, e.g., a larger iRNA agent which can be processed into a sRNA agent, or a DNA which encodes an iRNA agent, e.g., a double-stranded iRNA agent, or sRNA agent, or precursor thereof), e.g., a iRNA agent that silences an endogenous transcript. In one embodiment, the device is coated with the composition. In another embodiment the iRNA agent is disposed within the device. In another embodiment, the device includes a mechanism to dispense a unit dose of the composition. In other embodiments the device releases the composition continuously, e.g., by diffusion. Exemplary devices include stents, catheters, pumps, artificial organs or organ components (e.g., artificial heart, a heart valve, etc.), and sutures.
As used herein, the term “crystalline” describes a solid having the structure or characteristics of a crystal, i.e., particles of three-dimensional structure in which the plane faces intersect at definite angles and in which there is a regular internal structure. The compositions of the invention may have different crystalline forms. Crystalline forms can be prepared by a variety of methods, including, for example, spray drying.
The invention is further illustrated by the following examples, which should not be construed as further limiting.
EXAMPLES
Example 1
Inhibition of Endogenous ApoM Gene Expression in Mice
Apolipoprotein M (ApoM) is a human apolipoprotein predominantly present in high-density lipoprotein (HDL) in plasma. ApoM is reported to be expressed exclusively in liver and in kidney (Xu N et al., Biochem J Biol Chem 1999 Oct. 29; 274(44):31286-90). Mouse ApoM is a 21 kD membrane associated protein, and, in serum, the protein is associated with HDL particles. ApoM gene expression is regulated by the transcription factor hepatocyte nuclear factor 1 alpha (Hnf-1α), as Hnf-1α−/− mice are ApoM deficient. In humans, mutations in the HNF-1 alpha gene represent a common cause of maturity-onset diabetes of the young (MODY).
A variety of test iRNAs were synthesized to target the mouse ApoM gene. This gene was chosen in part because of its high expression levels and exclusive activity in the liver and kidney.
Three different classes of dsRNA agents were synthesized, each class having different modifications and features at the 5′ and 3′ ends, see Table 4.







TABLE 4







Targeted ORF's








5 The23mer: AAGTTTGGGCAGCTCTGCTCT
(SEQ ID NO: 6708)


 


19 The23mer: AAGTGGACATACCGATTGACT
(SEQ ID NO: 6709)


 


25 The23mer: AACTCAGAACTGAAGGGCGCC
(SEQ ID NO: 6710)


 


27 The23mer: AAGGGCGCCCAGACATGAAAA
(SEQ ID NO: 6711)


 







3′-UTR (beginning at 645)








42: AAGATAGGAGCCCAGCTTCGA
(SEQ ID NO: 6712)


 







Class I


21-nt iRNAs, t, deoxythymidine; p, phosphate








pGUUUGGGCAGCUCUGCUCUtt
(SEQ ID NO: 6712) #1


pAGAGCAGAGCUGCCCAAACtt
(SEQ ID NO: 6713)


 


pGUGGACAUACCGAUUGACUtt
(SEQ ID NO: 6714) #2


pAGUCAAUCGGUAUGUCCACtt
(SEQ ID NO: 6715)


 


pCUCAGAACUGAAGGGCGCCtt
(SEQ ID NO: 6716) #3


pGGCGCCCUUCAGUUCUGAGtt
(SEQ ID NO: 6717)


 


pGAUAGGAGCCCAGCUUCGAtt
(SEQ ID NO: 6718) #4


pUCGAAGCUGGGCUCCUAUCtt
(SEQ ID NO: 6719)


 







Class II


21-nt iRNAs, t, deoxythymidine; p, phosphate; ps, thiophosphate








pGUUUGGGCAGCUCUGCUCpsUpstpst
(SEQ ID NO: 6720) #11


pAGAGCAGAGCUGCCCAAApsCpstpst
(SEQ ID NO: 6721)


 


pGUGGACAUACCGAUUGACpsUpstpst
(SEQ ID NO: 6722) #13


pAGUCAAUCGGUAUGUCCApsCpstpst
(SEQ ID NO: 6723)


 


pCUCAGAACUGAAGGGCGCpsCpstpst
(SEQ ID NO: 6724) #15


pGGCGCCCUUCAGUUCUGApsGpstpst
(SEQ ID NO: 6725)


 


pGAUAGGAGCCCAGCUUCGpsApstpst
(SEQ ID NO: 6726) #17


pUCGAAGCUGGGCUCCUAUpsCpstpst
(SEQ ID NO: 6727)


 







Class III


23-nt antisense, 21-nt sense, blunt-ended 5′-as








GUUUGGGCAGCUCUGCUCUCU
(SEQ ID NO: 6728) #19


AGAGAGCAGAGCUGCCCAAACUU
(SEQ ID NO: 6729)


 


GUGGACAUACCGAUUGACUGA
(SEQ ID NO: 6730) #21


UCAGUCAAUCGGUAUGUCCACUU
(SEQ ID NO: 6731)


 


CUCAGAACUGAAGGGCGCCCA
(SEQ ID NO: 6732) #23


PUGGGCGCCCUUCAGUUCUGAGUU
(SEQ ID NO: 6733)


 


GAUAGGAGCCCAGCUUCGAGU
(SEQ ID NO: 6734) #25


ACUCGAAGCUGGGCUCCUAUCUU
(SEQ ID NO: 6735)









Class I dsRNAs consisted of 21 nucleotide paired sense and antisense strands. The sense and antisense strands were each phosphorylated at their 5′ ends. The double stranded region was 19 nucleotides long and consisted of ribonucleotides. The 3′ end of each strand created a two nucleotide overhang consisting of two deoxyribonucleotide thymidines. See constructs #1-4 in Table 4.
Class II dsRNAs were also 21 nucleotides long, with a 19 nucleotide double strand region. The sense and antisense strands were each phosphorylated at their 5′ ends. The three 3′ terminal nucleotides of the sense and antisense strands were phosphorothioate deoxyribonucleotides, and the two terminal phosphorothioate thymidines were unpaired, creating a 3′ overhang region at each end of the iRNA molecule. See constructs 11, 13, 15, and 17 in Table 4.
Class III dsRNAs included a 23 ribonucleotide antisense strand and a 21 ribonucleotide sense strand, to form a construct having a blunt 5′ and a 3′ overhang region. See constructs 19, 21, 23, and 25 in Table 4.
Within each of the three classes of iRNAs, the four dsRNA molecules were designed to target four different regions of the ApoM transcript. dsRNAs 1, 11, and 19 targeted the 5′ end of the open reading frame (ORF). dsRNAs 2, 13, and 21, and 3, 15, and 23, targeted two internal regions (one 5′ proximal and one 3′ proximal) of the ORF, and the 4, 17, and 25 iRNA constructs targeted to a region of the 3′ untranslated sequence (3′ UTS) of the ApoM mRNA. This is summarized in Table 5.







TABLE 5







iRNA molecules targeted to mouse ApoM












iRNA targeted
iRNA targeted
iRNA targeted
iRNA



to 5′ end of
to middle ORF
to middle ORF
targeted



ORF
(5′ proximal)
(3′ proximal)
to 3′UTS















Class I
1
2
3
4


Class II
11
13
15
17


Class III
19
21
23
25









CD1 mice (6-8 weeks old,  ̃35 g) were administered one of the test iRNAs in PBS solution. Two hundred micrograms of iRNA in a volume of solution equal to 10% body weight ( ̃5.7 mg iRNA/kg mouse) was administered by the method of high pressure tail vein injection, over a 10-20 sec. time interval. After a 24 h recovery period, a second injection was performed using the same dose and mode of administration as the first injection, and following another 24 h, a third and final injection was administered, also using the same dose and mode of administration. After a final 24 h recovery, the mouse was sacrificed, serum was collected and the liver and kidney harvested to assay for an affect on ApoM gene expression. Expression was monitored by quantitative RT-PCR and Western blot analyses. This experiment was repeated for each of the iRNAs listed in table 4.
Class I iRNAs did not alter ApoM RNA levels in mice, as indicated by quantitative RT-PCR. This is in contrast to the effect of these iRNAs in cultured HepG2 cells. Cells cotransfected with a plasmid expressing exogenous ApoM RNA under a CMV promoter and a class I iRNA demonstrated a 25% or greater reduction in ApoM RNA concentrations as compared to control transfections. The iRNA molecules 1, 2 and 3 each caused a 75% decrease in exogenous ApoM mRNA levels.
Class II iRNAs reduced liver and kidney ApoM mRNA levels by  ̃30-85%. The iRNA molecule “13” elicited the most dramatic reduction in mRNA levels; quantitative RT-PCR indicated a decrease of about 85% in liver tissue. Serum ApoM protein levels were also reduced as was evidenced by Western blot analysis. The iRNAs 11, 13 and 15, reduced protein levels by about 50%, while iRNA 17 had the mildest effect, reducing levels only by  ̃15-20%.
Class III iRNAs (constructs 19, 21, and 23) reduced serum Apo levels by  ̃40-50%.
To determine the effect of dosage on iRNA mediated ApoM inhibition, the experiment described above was repeated with three injections of 50 μg iRNA “11” ( ̃1.4 mg iRNA/kg mouse). This lower dosage of iRNA resulted in a reduction of serum ApoM levels of about 50%. This is compared with the reduction seen with the 200 μg injections, which reduced serum levels by 25-45%. These results indicated the lower dosage amounts of iRNAs were effective.
In an effort to increase iRNA uptake by cells, iRNAs were precomplexed with lipofectamine prior to tail vein injections. ApoM protein levels were about 50% of wildtype levels in mice injected with iRNA “11” when the molecules were preincubated with lipofectamine; ApoM levels were also about 50% of wildtype when mice were injected with iRNA “11” that was not precomplexed with lipofectamine.
These experiments revealed that modified iRNAs can greatly influence RNAi-mediated gene silencing. As demonstrated herein, modifications including phosphorothioate nucleotides are particularly effective at decreasing target protein levels.
Example 2
apoB Protein as a Therapeutic Target for Lipid-based Diseases
Apolipoprotein B (apoB) is a candidate target gene for the development of novel therapies for lipid-based diseases.
Methods described herein can be used to evaluate the efficacy of a particular siRNA as a therapeutic tool for treating lipid metabolism disorders resulting elevated apoB levels. Use of siRNA duplexes to selectively bind and inactivate the target apoB mRNA is an approach totreat these disorders.
Two approaches:
i) Inhibition of apoB in ex-vivo models by transfecting siRNA duplexes homologous to human apoB mRNA in a human hepatoma cell line (Hep G2) and monitor the level of the protein and the RNA using the Western blotting and RT-PCR methods, respectively. siRNA molecules that efficiently inhibit apoB expression will be tested for similar effects in vivo.
ii) In vivo trials using an apoB transgenic mouse model (apoB100 Transgenic Mice, C57BL/6NTac-TgN (APOB100), Order Model Ws:1004-T (hemizygotes), B6 (control)). siRNA duplexes are designed to target apoB-100 or CETP/apoB double transgenic mice which express both cholesteryl ester transfer protein (CETP) and apoB. The effect of the siRNA on gene expression in vivo can be measured by monitoring the HDL/LDL cholesterol level in serum. The results of these experiments would indicate the therapeutic potential of siRNAs to treat lipid-based diseases, including hypercholesterolemia, HDL/LDL cholesterol imbalance, familial combined hyperlipidemia, and acquired hyperlipidemia.
Background Fats, in the form of triglycerides, are ideal for energy storage because they are highly reduced and anhydrous. An adipocyte (or fat cell) consists of a nucleus, a cell membrane, and triglycerides, and its function is to store triglycerides.
The lipid portion of the human diet consists largely of triglycerides and cholesterol (and its esters). These must be emulsified and digested to be absorbed. Specifically, fats (triacylglycerols) are ingested. Bile (bile acids, salts, and cholesterol), which is made in the liver, is secreted by the gall bladder. Pancreatic lipase digests the triglycerides to fatty acids, and also digests di-, and mono-acylglycerols, which are absorbed by intestinal epithelial cells and then are resynthesized into triacylglycerols once inside the cells. These triglycerides and some cholesterols are combined with apolipoproteins to produce chylomicrons. Chylomicrons consist of approximately 95% triglycerides. The chylomicrons transport fatty acids to peripheral tissues. Any excess fat is stored in adipose tissue.
Lipid transport and clearance from the blood into cells, and from the cells into the blood and the liver, is mediated by the lipoprotein transport proteins. This class of approximately 17 proteins can be divided into three groups: Apolipoproteins, lipoprotein processing proteins, and lipoprotein receptors.
Apolipoproteins coat lipoprotein particles, and include the A-I, A-II, A-IV, B, CI, CII, CIII, D, E, Apo(a) proteins. Lipoprotein processing proteins include lipoprotein lipase, hepatic lipase, lecithin cholesterol acyltransferase and cholesterol ester transfer protein. Lipoprotein receptors include the low density lipoprotein (LDL) receptor, chylomicron-remnant receptor (the LDL receptor like protein or LDL receptor related protein—LRP) and the scavenger receptor.
Lipoprotein Metabolism Since the triglycerides, cholesterol esters, and cholesterol absorbed into the small intestine are not soluble in aqueous medium, they must be combined with suitable proteins (apolipoproteins) in order to prevent them from forming large oil droplets. The resulting lipoproteins undergo a type of metabolism as they pass through the bloodstream and certain organs (notably the liver).
Also synthesized in the liver is high density lipoprotein (HDL), which contains the apoproteins A-1, A-2, C-1, and D; HDL collects cholesterol from peripheral tissues and blood vessels and returns it to the liver. LDL is taken up by specific cell surface receptors into an endosome, which fuses with a lysosome where cholesterol ester is converted to free cholesterol. The apoproteins (including apo B-100) are digested to amino acids. The receptor protein is recycled to the cell membrane.
The free cholesterol formed by this process has two fates. First, it can move to the endoplasmic reticulum (ER), where it can inhibit HMG-CoA reductase, the synthesis of HMG-CoA reductase, and the synthesis of cell surface receptors for LDL. Also in the ER, cholesterol can speed up the degradation of HMG-CoA reductase. The free cholesterol can also be converted by acyl-CoA and acyl transferase (ACAT) to cholesterol esters, which form oil droplets.
ApoB is the major apolipoprotein of chylomicrons of very low density lipoproteins (VLDL, which carry most of the plasma triglyceride) and low density lipoprotein (LDL, which carry most of the plasma cholesterol). ApoB exists in human plasma in two isoforms, apoB-48 and apoB-100.
ApoB-100 is the major physiological ligand for the LDL receptor. The ApoB precursor has 4563 amino acids, and the mature apoB-100 has 4536 amino acid residues. The LDL-binding domain of ApoB-100 is proposed to be located between residues 3129 and 3532. ApoB-100 is synthesized in the liver and is required for the assembly of very low density lipoproteins VLDL and for the preparation of apoB-100 to transport triglycerides (TG) and cholesterol from the liver to other tissues. ApoB-100 does not interchange between lipoprotein particles, as do the other lipoproteins, and it is found in IDL and LDL particles. After the removal of apolipoproteins A, E and C, apoB is incorporation into VLDL by hepatocytes. ApoB-48 is present in chylomicrons and plays an essential role in the intestinal absorption of dietary fats. ApoB-48 is synthesized in the small intestine. It comprises the N-terminal 48% of apoB-100 and is produced by a posttranscriptional apoB-100 mRNA editing event at codon 2153 (C to U). This editing event is a product of the apoBEC-1b enzyme, which is expressed in the intestine. This editing event creates a stop codon instead of a glutamine codon, and therefore apoB-48, instead of apoB-100 is expressed in the intestine (apoB-100 is expressed in the liver).
There is also strong evidence that plasma apoB levels may be a better index of the risk of coronary artery disease (CAD) than total or LDL cholesterol levels. Clinical studies have demonstrated the value of measuring apoB in hypertriglyceridemic, hypercholesterolemic and normalipidemic subjects.







TABLE 6







Reference Range Lipid level in the Blood










Lipid
Range (mmols/L)















Plasma Cholesterol
3.5-6.5




Low density lipoprotein
1.55-4.4



Very low density lipoprotein
0.128-0.645



High density lipoprotein/triglycerides
0.5-2.1



Total lipid
4.0-10
g/L










Molecular genetics of lipid metabolism in both humans and induced mutant mouse models Elevated plasma levels of LDL and apoB are associated with a higher risk for atherosclerosis and coronary heart disease, a leading cause of mortality. ApoB is the mandatory constituent of LDL particles. In addition to its role in lipoprotein metabolism, apoB has also been implicated as a factor in male infertility and fetal development. Furthermore, two quantitative trait loci regulating plasma apoB levels have been discovered, through the use of transgenic mouse models. Future experiments will facilitate the identification of human orthologous genes encoding regulators of plasma apoB levels. These loci are candidate therapeutic targets for human disorders characterized by altered plasma apoB levels. Such disorders include non-apoB linked hypobetalipoproteinemia and familial combined hyperlipidemia. The identification of these genetic loci would also reveal possible new pathways involved in the regulation of apoB secretion, potentially providing novel sites for pharmacological therapy.
Diseases and Clinical Pharmacology Familial combined hyperlipemia (FCHL) affects an estimated one in 10 Americans. FCHL can cause premature heart disease.
Familial Hypercholesterolemia (high level of apo B) A common genetic disorder of lipid metabolism. Familial hypercholesterolemia is characterized by elevated serum TC in association with xanthelasma, tendon and tuberous xanthomas, accelerated atherosclerosis, and early death from myocardial infarction (MI). It is caused by absent or defective LDL cell receptors, resulting in delayed LDL clearance, an increase in plasma LDL levels, and an accumulation of LDL cholesterol in macrophages over joints and pressure points, and in blood vessels.
Atherosclerosis (high level of apo B) Atherosclerosis develops as a deposition of cholesterol and fat in the arterial wall due to disturbances in lipid transport and clearance from the blood into cells and from the cells to blood and the liver.
Clinical studies have demonstrated that elevation of total cholesterol (TC), low-density lipoprotein cholesterol (LDL-C) and apoB-100 promote human atherosclerosis. Similarly, decreased levels of high-density lipoprotein cholesterol (HDL-C) are associated with the development of atherosclerosis.
ApoB may be factor in the genetic cause of high cholesterol.
The risk of coronary artery disease (CAD) (High Level of Apo B) Cardiovascular disease, including coronary heart disease and stroke, is a leading cause of death and disability. The major risk factors include age, gender, elevated low-density lipoprotein cholesterol blood levels, decreased high-density lipoprotein cholesterol levels, cigarette smoking, hypertension, and diabetes. Emerging risk factors include elevated lipoprotein (a), remnant lipoproteins, and C reactive protein. Dietary intake, physical activity and genetics also impact cardiovascular risk. Hypertension and age are the major risk factors for stroke.
Abetalipoproteinemia, an inherited human disease characterized by a near-complete absence of apoB-containing lipoproteins in the plasma, is caused by mutations in the gene for microsomal triglyceride transfer protein (MTP).
Model for human atherosclerosis (Lipoprotein A transgenic mouse) Numerous studies have demonstrated that an elevated plasma level of lipoprotein(a) (Lp(a)) is a major independent risk factor for coronary heart disease (CHD). Current therapies, however, have little or no effect on apo(a) levels and the homology between apo(a) and plasminogen presents barriers to drug development. Lp(a) particles consist of apo(a) and apoB-100 proteins, and they are found only in primates and the hedgehog. The development of LPA transgenic mouse requires the creation of animals that express both human apoB and apo(a) transgenes to achieve assembly of LP(a). An atherosclerosis mouse model would facilitate the study of the disease process and factors influencing it, and further would facilitate the development of therapeutic or preventive agents. There are several strategies for gene-oriented therapy. For example, the missing or non-functional gene can be replaced, or unwanted gene activity can be inhibited.
Model for lipid Metabolism and Atherosclerosis DNX Transgenic Sciences has demonstrated that both CETP/ApoB and ApoB transgenic mice develop atherosclerotic plaques.
Model for ApoB-100 overexpression The apoB-100 transgenic mice express high levels of human apoB-100. They consequently demonstrate elevated serum levels of LDL cholesterol. After 6 months on a high-fat diet, the mice develop significant foam cell accumulation under the endothelium and within the media, as well as cholesterol crystals and fibrotic lesions.
Model for Cholesteryl ester transfer protein over expression The apoB-100 transgenic mice express the human enzyme, CETP, and consequently demonstrate a dramatically reduced level of serum HDL cholesterol.
Model for apoB-100 and CETP overexpression The apoB-100 transgenic mice express both CETP and apoB-100, resulting in mice with a human like serum HDL/LDL distribution. Following 6 months on a high-fat diet these mice develop significant foam cell accumulation underlying the endothelium and within the media, as well as cholesterol crystals and fibrotic lesions.
ApoB100 Transgenic Mice (Order Model #'s:1004-T (hemizygotes), B6 (control)) These mice express high levels of human apoB-100, resulting in mice with elevated serum levels of LDL cholesterol. These mice are useful in identifying and evaluating compounds to reduce elevated levels of LDL cholesterol and the risk of atherosclerosis. When fed a high fat cholesterol diet, these mice develop significant foam cell accumulation underly the endothelium and within the media, and have significantly more complex atherosclerotic lesions than control animals.
Double Transgenic Mice, CETP/ApoB100 (Order Model #: 1007-TT) These mice express both CETP and apoB-100, resulting in a human-like serum HDL/LDL distribution. These mice are useful for evaluating compounds to treat hypercholesterolemia or HDL/LDL cholesterol imbalance to reduce the risk of developing atherosclerosis. When fed a high fat high cholesterol diet, these mice develop significant foam cell accumulation underlying the endothelium and within the media, and have significantly more complex atherosclerotic lesions than control animals.
ApoE gene knockout mouse Homozygous apoE knockout mice exhibit strong hypercholesterolemia, primarily due to elevated levels of VLDL and IDL caused by a defect in lipoprotein clearance from plasma. These mice develop atherosclerotic lesions which progress with age and resemble human lesions (Zhang et al., Science 258:46-71, 1992; Plump et al., Cell 71:343-353, 1992; Nakashima et al., Arterioscler Thromp. 14:133-140, 1994; Reddick et al., Arterioscler Tromb. 14:141-147, 1994). These mice are a promising model for studying the effect of diet and drugs on atherosclerosis.
Low density lipoprotein receptor (LDLR) mediates lipoprotein clearance from plasma through the recognition of apoB and apoE on the surface of lipoprotein particles. Humans, who lack or have a decreased number of the LDL receptors, have familial hypercholesterolemia and develop CHD at an early age.
ApoE Knockout Mice (Order Model #: APOE-M) The apoE knockout mouse was created by gene targeting in embryonic stem cells to disrupt the apoE gene. ApoE, a glycoprotein, is a structural component of very low density lipoprotein (VLDL) synthesized by the liver and intestinally synthesized chylomicrons. It is also a constituent of a subclass of high density lipoproteins (HDLs) involved in cholesterol transport activity among cells. One of the most important roles of apoE is to mediate high affinity binding of chylomicrons and VLDL particles that contain apoE to the low density lipoprotein (LDL) receptor. This allows for the specific uptake of these particles by the liver which is necessary for transport preventing the accumulation in plasma of cholesterol-rich remnants. The homozygous inactivation of the apoE gene results in animals that are devoid of apoE in their sera. The mice appear to develop normally, but they exhibit five times the normal serum plasma cholesterol and spontaneous atherosclerotic lesions. This is similar to a disease in people who have a variant form of the apoE gene that is defective in binding to the LDL receptor and are at risk for early development of atherosclerosis and increased plasma triglyceride and cholesterol levels. There are indications that apoE is also involved in immune system regulation, nerve regeneration and muscle differentiation. The apoE knockout mice can be used to study the role of apoE in lipid metabolism, atherogenesis, and nerve injury, and to investigate intervention therapies that modify the atherogenic process.
Apoe4 Targeted Replacement Mouse (Order Model #: 001549-M) ApoE is a plasma protein involved in cholesterol transport, and the three human isoforms (E2, E3, and E4) have been associated with atherosclerosis and Alzheimer's disease. Gene targeting of 129 ES cells was used to replace the coding sequence of mouse apoE with human APOE4 without disturbing the murine regulatory sequences. The E4 isoform occurs in approximately 14% of the human population and is associated with increased plasma cholesterol and a greater risk of coronary artery disease. The Taconic apoE4 Targeted Replacement model has normal plasma cholesterol and triglyceride levels, but altered quantities of different plasma lipoprotein particles. This model also has delayed plasma clearance of cholesterol-rich lipoprotein particles (VLDL), with only half the clearance rate seen in the apoE3 Targeted Replacement model. Like the apoE3 model, the apoE4 mice develop altered plasma lipoprotein values and atherosclerotic plaques on an atherogenic diet. However, the atherosclerosis is more severe in the apoE4 model, with larger plaques and cholesterol apoE and apoB-48 levels twice that seen in the apoE3 model. The Taconic apoE4 Targeted Replacement model, along with the apoE2 and apoE3 Targeted Replacement Mice, provide an excellent tool for in vivo study of the human apoE isoforms.
CETP Transgenic Mice (Order Model #: 1003-T) These animals express the human plasma enzyme, CETP, resulting in mice with a dramatic reduction in serum HDL cholesterol. The mice can be useful in identifying and evaluating compounds that increase the levels of HDL cholesterol for reducing the risk of developing atherosclerosis
Transgene/Promoter: human apolipoprotein A-I These mice produce mouse HDL cholesterol particles that contain human apolipoprotein A-I. Transgenic expression is life-long in both sexes (Biochemical Genetics and Metabolism Laboratory, Rockefeller University, NY City).
A Mouse Model for Abetalipoproteinemia Abetalipoproteinemia, an inherited human disease characterized by a near-complete absence of apoB-containing lipoproteins in the plasma, is caused by mutations in the gene for microsomal triglyceride transfer protein (MTP). Gene targeting was used to knock out the mouse MTP gene (Mttp). In heterozygous knockout mice (Mttp+/−), the MTP mRNA, protein, and activity levels were reduced by 50% in both liver and intestine. Recent studies with heterozygous MTP knockout mice have suggested that half-normal levels of MTP in the liver reduce apoB secretion. They hypothesized that reduced apoB secretion in the setting of half-normal MTP levels might be caused by a reduced MTP:apoB ratio in the endoplasmic reticulum, which would reduce the number of apoB-MTP interactions. If this hypothesis were true, half-normal levels of MTP might have little impact on lipoprotein secretion in the setting of half-normal levels of apoB synthesis (since the ratio of MTP to apoB would not be abnormally low) and might cause an exaggerated reduction in lipoprotein secretion in the setting of apoB overexpression (since the ratio of MTP to apoB would be even lower). To test this hypothesis, they examined the effects of heterozygous MTP deficiency on apoB metabolism in the setting of normal levels of apoB synthesis, half-normal levels of apoB synthesis (heterozygous Apob deficiency), and increased levels of apoB synthesis (transgenic overexpression of human apoB). Contrary to their expectations, half-normal levels of MTP reduced plasma apoB-100 levels to the same extent ( ̃25-35%) at each level of apoB synthesis. In addition, apoB secretion from primary hepatocytes was reduced to a comparable extent at each level of apoB synthesis. Thus, these results indicate that the concentration of MTP within the endoplasmic reticulum, rather than the MTP:apoB ratio, is the critical determinant of lipoprotein secretion. Finally, heterozygosity for an apoB knockout mutation was found to lower plasma apoB-100 levels more than heterozygosity for an MTP knockout allele. Consistent with that result, hepatic triglyceride accumulation was greater in heterozygous apoB knockout mice than in heterozygous MTP knockout mice. Cre/loxP tissue-specific recombination techniques were also used to generate liver-specific Mttp knockout mice. Inactivation of the Mttp gene in the liver caused a striking reduction in very low density lipoprotein (VLDL) triglycerides and large reductions in both VLDL/low density lipoproteins (LDL) and high density lipoprotein cholesterol levels. Histologic studies in liver-specific knockout mice revealed moderate hepatic steatosis. Currently being tested is the hypothesis that accumulation of triglycerides in the liver renders the liver more susceptible to injury by a second insult (e.g., lipopolysaccharide).
Human Apo B (Apolipoprotein B) Transgene mice show apo B locus may have a causative role male infertility The fertility of apoB (apolipoprotein B) (+/−) mice was recorded during the course of backcrossing (to C57BL/6J mice) and test mating. No apparent fertility problem was observed in female apoB (+/−) and wild-type female mice, as was documented by the presence of vaginal plugs in female mice. Although apoB (+/−) mice mated normally, only 40% of the animals from the second backcross generation produced any offspring within the 4-month test period. Of the animals that produced progeny, litters resulted from <50% of documented matings. In contrast, all wild-type mice (6/6—i.e., 100%) tested were fertile. These data suggest genetic influence on the infertility phenotype, as a small number of male heterozygotes were not sterile. Fertilization in vivo was dramatically impaired in male apoB (+/−) mice. 74% of eggs examined were fertilized by the sperm from wild-type mice, whereas only 3% of eggs examined were fertilized by the sperm from apoB (+/−) mice. The sperm counts of apoB (+/−) mice were mildly but significantly reduced compared with controls. However, the percentage of motile sperm was markedly reduced in the apoB (+/−) animals compared with that of the wild-type controls. Of the sperm from apoB (+/−) mice, 20% (i.e., 4.9% of the initial 20% motile sperm) remained motile after 6 hr of incubation, whereas 45% (i.e., 33.6% of the initial 69.5%) of the motile sperm retained motility in controls after this time. In vitro fertilization yielded no fertilized eggs in three attempts with apo B (+/−) mice, while wild-type controls showed a fertilization rate of 53%. However, sperm from apoB (+/−) mice fertilized 84% of eggs once the zona pellucida had been removed. Numerous sperm from apoB (+/−) mice were seen binding to zona-intact eggs. However, these sperm lost their motility when observed 4-6 hours after binding, showing that sperm from apoB (+/−) mice were unable to penetrate the zona pellucida but that the interaction between sperm and egg was probably not direct. Sperm binding to zona-free oocytes was abnormal. In the apoB (+/−) mice, sperm binding did not attenuate, even after pronuclei had clearly formed, suggesting that apoB deficiency results in abnormal surface interaction between the sperm and egg.
Knockout of the mouse apoB gene resulted in embryonic lethality in homozygotes, protection against diet-induced hypercholesterolemia in heterozygotes, and developmental abnormalities in mice.
Model of insulin resistance, dyslipidemia & overexpression of human apob It was shown that the livers of apoB mice assemble and secrete increased numbers of VLDL particles.
Example 3
Treatment of Diabetes Type-2 with iRNA
Introduction The regulation of hepatic gluconeogenesis is an important process in the adjustment of the blood glucose level. Pathological changes in the glucose production of the liver are a central characteristic in type-2-diabetes. For example, the fasting hyperglycemia observed in patients with type-2-diabetes reflects the lack of inhibition of hepatic gluconeogenesis and glycogenolysis due to the underlying insulin resistance in this disease. Extreme conditions of insulin resistance can be observed for example in mice with a liver-specific insulin receptor knockout (‘LIRKO’). These mice have an increased expression of the two rate-limiting gluconeogenic enzymes, phosphoenolpyruvate carboxykinase (PEPCK) and the glucose-6-phosphatase catalytic subunit (G6Pase). Insulin is known to repress both PEPCK and G6Pase gene expression at the transcriptional level and the signal transduction involved in the regulation of G6Pase and PEPCK gene expression by insulin is only partly understood. While PEPCK is involved in a very early step of hepatic gluconeogenesis (synthesis of phosphoenolpyruvate from oxaloacetate), G6Pase catalyzes the terminal step of both, gluconeogenesis and glycogenolysis, the cleavage of glucose-6-phosphate into phosphate and free glucose, which is then delivered into the blood stream.
The pharmacological intervention in the regulation of expression of PEPCK and G6Pase can be used for the treatment of the metabolic aberrations associated with diabetes. Hepatic glucose production can be reduced by an iRNA-based reduction of PEPCK and G6Pase enzymatic activity in subjects with type-2-diabetes.
Targets for iRNA
Glucose-6-phosphatase (G6Pase)
G6Pase mRNA is expressed principally in liver and kidney, and in lower amounts in the small intestine. Membrane-bound G6Pase is associated with the endoplasmic reticulum. Low activities have been detected in skeletal muscle and in astrocytes as well.
G6Pase catalyzes the terminal step in gluconeogenesis and glycogenolysis. The activity of the enzyme is several fold higher in diabetic animals and probably in diabetic humans. Starvation and diabetes cause a 2-3-fold increase in G6Pase activity in the liver and a 2-4-fold increase in G6Pase mRNA.
Phosphoenolpyruvate Carboxykinase (PEPCK)
Overexpression of PEPCK in mice results in symptoms of type-2-diabetes mellitus. PEPCK overexpression results in a metabolic pattern that increases G6Pase mRNA and results in a selective decrease in insulin receptor substrate (IRS)-2 protein, decreased phosphatidylinositol 3-kinase activity, and reduced ability of insulin to suppress gluconeogenic gene expression.







TABLE 7







Other targets to inhibit hepatic glucose production








Target
Comment





FKHR
good evidence for antidiabetic



phenotype (Nakae et al., Nat Genetics



32:245 (2002)


Glucagon


Glucagon receptor


Glycogen phosphorylase


PGC-1 (PPAR-Gamma
regulates the cAMP response (and


Coactivator)
probably the PKB/FKHR-regulation) on



PEPCK/G6Pase


Fructose-1,6-bisphosphatase


Glucose-6-phospate translocator


Glucokinase inhibitory


regulatory protein









Materials and Methods

Animals: BKS.Cg-m+/+Lepr db mice, which contain a point mutation in the leptin receptor gene are used to examine the efficacy of iRNA for the targets listed above.
BKS.Cg-m+/+Lepr db are available from the Jackson Laboratory (Stock Number 000642). These animals are obese at 3-4 weeks after birth, show elevation of plasma insulin at 10 to 14 days, elevation of blood sugar at 4 to 8 weeks, and uncontrolled rise in blood sugar. Exogenous insulin fails to control blood glucose levels and gluconeogenic activity increases.
The following numbers of male animals (age>12 weeks) would ideally be tested with the following iRNAs:

    
    
        PEPCK, 2 sequences, 5 animals per sequence
        
            G6Pase, 2 sequences, 5 animals per sequence
            1 nonspecific sequence, 5 animals
            1 control group (only injected, no siRNA), 5 animals
            1 control group (not injected, no siRNA), 5 animals
        
        
    
    


Reagents: Necessary reagents would ideally include a Glucometer Elite XL (Bayer, Pittsburgh, Pa.) for glucose quantification, and an Insulin Radioimmunoassay (RIA) kit (Amersham, Piscataway, N.J.) for insulin quanitation
Assays:
G6P enzyme assays and PEPCK enzyme assays are used to measure the activity of the enzymes. Northern blotting is used to detect levels of G6Pase and PEPCK mRNA. Antibody-based techniques (e.g., immunoblotting, immunofluorescence) are used to detect levels of G6Pase and PEPCK protein. Glycogen staining is used to detect levels of glycogen in the liver. Histological analysis is performed to analyze tissues.
Gene information:


    G6Pase GenBank® No.: NM—008061, Mus musculus glucose-6-phosphatase, catalytic (G6pc), mRNA 1.2259, ORF 83.1156;
    GenBank® No: U00445, Mus musculus glucose-6-phosphatase mRNA, complete cds 1.2259, ORF 83.1156
    GenBank® No: BC013448

PEPCK

    GenBank® No: NM—011044, Mus musculus phosphoenolpyruvate carboxykinase 1, cytosolic (Pck1), mRNA.1 . . . 2618, ORF 141 . . . 2009
    GenBank® No: AF009605.1

Administration of iRNA:



iRNA corresponding to the genes described above would be administered to mice with hydrodynamic injection. One control group of animals would be treated with Metformin as a positive control for reduction in hepatic glucose levels.
Experimental Protocol
Mice would be housed in a facility in which there is light from 7:00 AM to 7:00 PM. Mice would be fed ad libidum from 7:00 PM to 7:00 AM and fast from 7:00 AM to 7:00 PM.

    Day 0: 7:00 PM: Approximately 100 μl blood would be drawn from the tail. Serum would be isolated to measure glucose, insulin, HbA1c (EDTA-blood), glucagon, FFAs, lactate, corticosterone, serum triglycerides.
    Day 1-7: Blood glucose would be measured daily at 8:00 AM and 6:00 PM (approx. 3-5 μl; measured with a Haemoglucometer)
    Day 8: Blood glucose would be measured daily at 8:00 AM and 6:00 PM. iRNA would be injected between 10:00 AM and 2:00 PM
    Day 9-20: Blood glucose would be measured daily at 8:00 AM and 6:00 PM.
    Day 21: Mice would be sacrificed after 10 hours of fasting.


Blood would be isolated. Glucose, insulin, HbAlc (EDTA-blood), glucagon, FFAs, lactate, corticosterone, serum triglycerides would be measured. Liver tissue would be isolated for histology, protein assays, RNA assays, glycogen quantitation, and enzyme assays.
Example 4
Inhibition of Glucose-6-Phosphatase iRNA In Vivo
iRNA targeted to the Glucose-6-Phosphatase (G6P) gene was used to examine the effects of inhibition of G6P expression on glucose metabolism in vivo.
Female mice, 10 weeks of age, strain BKS.Cg-m+/+Lepr db (The Jackson Laboratory) were used for in vivo analysis of enzymes of the hepatic glucose production. Mice were housed under conditions where it was light from 6:30 am to 6:30 pm. Mice were fed (ad libidum) during the night period and fasted during the day period.
On day 1, approximately 100 μl of blood was collected from test animals by puncturing the retroorbital plexus. On days 1-7, blood glucose was measured in blood obtained from tail veins (approximately 3-5 μl) using a Glucometer (Elite XL, Bayer). Blood glucose was sampled daily at 8 am and 6 pm.
On day 7 at approximately 2 pm, GL3 plasmid (10 μg) and siRNAs (100 μg G6Pase specific, Renilla nonspecific or no siRNA control) were delivered to animals using hydrodynamic coinjection.
On day 8, GL3 expression was analyzed by injection of luceferin (3 mg) after anaesthesia with avertin and imaging. This was done to control for successful hydrodynamic delivery.
On days 8-10, blood glucose was measured in blood obtained from tail veins (approximately 3-5 ml) using a Glucometer (Elite XL, Bayer).
On day 10, mice were sacrificed after 10 hours of fasting. Blood and liver were isolated from sacrificed animals.
Results: Coinjection of GL3 plasmid and G6Pase iRNA (G6P4) reduced blood glucose levels for the short term. Coinjection of GL3 plasmid and Renilla nonspecific iRNA had no effect on blood glucose levels.
Example 5
Selected Palindromic Sequences
Tables 8-13 below provide selected palindromic sequences from the following genes: human ApoB, human glucose-6-phosphatase, rat glucose-6-phosphatase, β-catenin, and hepatitis C virus (HCV).







TABLE 8







Selected palindromic sequences from human ApoB


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B



















SEQ ID NO: 1
ggccattccagaagggaag
509
528
SEQ ID NO: 1004
cttccgttctgtaatggcc
5795
5814
1
9


 


SEQ ID NO: 2
tgccatctcgagagttcca
4099
4118
SEQ ID NO: 1005
tggaactctctccatggca
10876
10895
1
8


 


SEQ ID NO: 3
catgtcaaacactttgtta
7056
7075
SEQ ID NO: 1006
taacaaattccttgacatg
7358
7377
1
8


 


SEQ ID NO: 4
tttgttataaatcttattg
7068
7087
SEQ ID NO: 1007
caataagatcaatagcaaa
8990
9009
1
8


 


SEQ ID NO: 5
tctggaaaagggtcatgga
8880
8899
SEQ ID NO: 1008
tccatgtcccatttacaga
11356
11375
1
8


 


SEQ ID NO: 6
cagctcttgttcaggtcca
10900
10919
SEQ ID NO: 1009
tggacctgcaccaaagctg
13952
13971
1
8


 


SEQ ID NO: 7
ggaggttccccagctctgc
356
375
SEQ ID NO: 1010
gcagccctgggaaaactcc
6447
6466
1
7


 


SEQ ID NO: 8
ctgttttgaagactctcca
1081
1100
SEQ ID NO: 1011
tggagggtagtcataacag
10327
10346
1
7


 


SEQ ID NO: 9
agtggctgaaacgtgtgca
1297
1316
SEQ ID NO: 1012
tgcagagctttctgccact
13508
13527
1
7


 


SEQ ID NO: 10
ccaaaatagaagggaatct
2068
2087
SEQ ID NO: 1013
agattcctttgccttttgg
4000
4019
1
7


 


SEQ ID NO: 11
tgaagagaagattgaattt
3620
3639
SEQ ID NO: 1014
aaattctcttttcttttca
9212
9231
1
7


 


SEQ ID NO: 12
agtggtggcaacaccagca
4230
4249
SEQ ID NO: 1015
tgctagtgaggccaacact
10649
10668
1
7


 


SEQ ID NO: 13
aaggctccacaagtcatca
5950
5969
SEQ ID NO: 1016
tgatgatatctggaacctt
10724
10743
1
7


 


SEQ ID NO: 14
gtcagccaggtttatagca
7725
7744
SEQ ID NO: 1017
tgctaagaaccttactgac
7781
7800
1
7


 


SEQ ID NO: 15
tgatatctggaaccttgaa
10727
10746
SEQ ID NO: 1018
ttcactgttcctgaaatca
7863
7882
1
7


 


SEQ ID NO: 16
gtcaagttgagcaatttct
13423
13442
SEQ ID NO: 1019
agaaaaggcacaccttgac
11072
11091
1
7


 


SEQ ID NO: 17
atccagatggaaaagggaa
13480
13499
SEQ ID NO: 1020
ttccaatttccctgtggat
3680
3699
1
7


 


SEQ ID NO: 18
atttgtttgtcaaagaagt
4543
4562
SEQ ID NO: 1021
acttcagagaaatacaaat
11401
11420
4
6


 


SEQ ID NO: 19
ctggaaaatgtcagcctgg
204
223
SEQ ID NO: 1022
ccagacttccgtttaccag
8235
8254
2
6


 


SEQ ID NO: 20
accaggaggttcttcttca
1729
1748
SEQ ID NO: 1023
tgaagtgtagtctcctggt
5089
5108
2
6


 


SEQ ID NO: 21
aaagaagttctgaaagaat
1956
1975
SEQ ID NO: 1024
attccatcacaaatccttt
9661
9680
2
6


 


SEQ ID NO: 22
gctacagcttatggctcca
3570
3589
SEQ ID NO: 1025
tggatctaaatgcagtagc
11623
11642
2
6


 


SEQ ID NO: 23
atcaatattgatcaatttg
6414
6433
SEQ ID NO: 1026
caaagaagtcaagattgat
4553
4572
2
6


 


SEQ ID NO: 24
gaattatcttttaaaacat
7326
7345
SEQ ID NO: 1027
atgtgttaacaaaatattc
11494
11513
2
6


 


SEQ ID NO: 25
cgaggcccgcgctgctggc
130
149
SEQ ID NO: 1028
gccagaagtgagatcctcg
3507
3526
1
6


 


SEQ ID NO: 26
acaactatgaggctgagag
271
290
SEQ ID NO: 1029
ctctgagcaacaaatttgt
10309
10328
1
6


 


SEQ ID NO: 27
gctgagagttccagtggag
282
301
SEQ ID NO: 1030
ctccatggcaaatgtcagc
10885
10904
1
6


 


SEQ ID NO: 28
tgaagaaaaccaagaactc
448
467
SEQ ID NO: 1031
gagtcattgaggttcttca
4929
4948
1
6


 


SEQ ID NO: 29
cctacttacatcctgaaca
558
577
SEQ ID NO: 1032
tgttcataagggaggtagg
12766
12785
1
6


 


SEQ ID NO: 30
ctacttacatcctgaacat
559
578
SEQ ID NO: 1033
atgttcataagggaggtag
12765
12784
1
6


 


SEQ ID NO: 31
gagacagaagaagccaagc
615
634
SEQ ID NO: 1034
gcttggttttgccagtctc
2459
2478
1
6


 


SEQ ID NO: 32
cactcactttaccgtcaag
671
690
SEQ ID NO: 1035
cttgaacacaaagtcagtg
6000
6019
1
6


 


SEQ ID NO: 33
ctgatcagcagcagccagt
822
841
SEQ ID NO: 1036
actgggaagtgcttatcag
5237
5256
1
6


 


SEQ ID NO: 34
actggacgctaagaggaag
854
873
SEQ ID NO: 1037
cttccccaaagagaccagt
2890
2909
1
6


 


SEQ ID NO: 35
agaggaagcatgtggcaga
865
884
SEQ ID NO: 1038
tctggcatttactttctct
5921
5940
1
6


 


SEQ ID NO: 36
tgaagactctccaggaact
1087
1106
SEQ ID NO: 1039
agttgaaggagactattca
7216
7235
1
6


 


SEQ ID NO: 37
ctctgagcaaaatatccag
1121
1140
SEQ ID NO: 1040
ctggttactgagctgagag
1161
1180
1
6


 


SEQ ID NO: 38
atgaagcagtcacatctct
1189
1208
SEQ ID NO: 1041
agagctgccagtccttcat
10016
10035
1
6


 


SEQ ID NO: 39
ttgccacagctgattgagg
1209
1228
SEQ ID NO: 1042
cctcctacagtggtggcaa
4222
4241
1
6


 


SEQ ID NO: 40
agctgattgaggtgtccag
1216
1235
SEQ ID NO: 1043
ctggattccacatgcagct
11847
11866
1
6


 


SEQ ID NO: 41
tgctccactcacatcctcc
1278
1297
SEQ ID NO: 1044
ggaggctttaagttcagca
7601
7620
1
6


 


SEQ ID NO: 42
tgaaacgtgtgcatgccaa
1303
1322
SEQ ID NO: 1045
ttgggagagacaagtttca
6500
6519
1
6


 


SEQ ID NO: 43
gacattgctaattacctga
1503
1522
SEQ ID NO: 1046
tcagaagctaagcaatgtc
7232
7251
1
6


 


SEQ ID NO: 44
ttcttcttcagactttcct
1738
1757
SEQ ID NO: 1047
aggagagtccaaattagaa
8498
8517
1
6


 


SEQ ID NO: 45
ccaatatcttgaactcaga
1903
1922
SEQ ID NO: 1048
tctgaattcattcaattgg
6485
6504
1
6


 


SEQ ID NO: 46
aaagttagtgaaagaagtt
1946
1965
SEQ ID NO: 1049
aactaccctcactgccttt
2132
2151
1
6


 


SEQ ID NO: 47
aagttagtgaaagaagttc
1947
1966
SEQ ID NO: 1050
gaacctctggcatttactt
5916
5935
1
6


 


SEQ ID NO: 48
aaagaagttctgaaagaat
1956
1975
SEQ ID NO: 1051
attctctggtaactacttt
5482
5501
1
6


 


SEQ ID NO: 49
tttggctataccaaagatg
2322
2341
SEQ ID NO: 1052
catcttaggcactgacaaa
4997
5016
1
6


 


SEQ ID NO: 50
tgttgagaagctgattaaa
2381
2400
SEQ ID NO: 1053
tttagccatcggctcacca
5700
5719
1
6


 


SEQ ID NO: 51
caggaagggctcaaagaat
2561
2580
SEQ ID NO: 1054
attcctttaacaattcctg
9492
9511
1
6


 


SEQ ID NO: 52
aggaagggctcaaagaatg
2562
2581
SEQ ID NO: 1055
cattcctttaaccattcct
9491
9510
1
6


 


SEQ ID NO: 53
gaagggctcaaagaatgac
2564
2583
SEQ ID NO: 1056
gtcagtcttcaggctcttc
7914
7933
1
6


 


SEQ ID NO: 54
caaagaatgacttttttct
2572
2591
SEQ ID NO: 1057
agaaggatggcattttttg
14000
14019
1
6


 


SEQ ID NO: 55
catggagaatgcctttgaa
2603
2622
SEQ ID NO: 1058
ttcagagccaaagtccatg
7119
7138
1
6


 


SEQ ID NO: 56
ggagccaaggctggagtaa
2679
2698
SEQ ID NO: 1059
ttactccaacgccagctcc
3050
3069
1
6


 


SEQ ID NO: 57
tcattccttccccaaagag
2884
2903
SEQ ID NO: 1060
ctctctggggcatctatga
5139
5158
1
6


 


SEQ ID NO: 58
acctatgagctccagagag
3165
3184
SEQ ID NO: 1061
ctctcaagaccacagaggt
12976
12995
1
6


 


SEQ ID NO: 59
gggcaaaacgtcttacaga
3365
3384
SEQ ID NO: 1062
tctgaaagacaacgtgccc
12317
12336
1
6


 


SEQ ID NO: 60
accctggacattcagaaca
3387
3406
SEQ ID NO: 1063
tgttgctaaggttcagggt
5675
5694
1
6


 


SEQ ID NO: 61
atgggcgacctacgttgtg
3429
3448
SEQ ID NO: 1064
cacaaattagtttcaccat
8941
8960
1
6


 


SEQ ID NO: 62
gatgaagagaagattgaat
3618
3637
SEQ ID NO: 1065
attccagcttccccacatc
8330
8349
1
6


 


SEQ ID NO: 63
caatgtagataccaaaaaa
3656
3675
SEQ ID NO: 1066
ttttttggaaatgccattg
8643
8662
1
6


 


SEQ ID NO: 64
gtagataccaaaaaaatga
3660
3679
SEQ ID NO: 1067
tcatgtgatgggtctctac
4371
4390
1
6


 


SEQ ID NO: 65
gcttcagttcatttggact
4509
4528
SEQ ID NO: 1068
agtcaagaaggacttaagc
5304
5323
1
6


 


SEQ ID NO: 66
tttgtttgtcaaagaagtc
4544
4563
SEQ ID NO: 1069
gacttcagagaaatacaaa
11400
11419
1
6


 


SEQ ID NO: 67
ttgtttgtcaaagaagtca
4545
4564
SEQ ID NO: 1070
tgacttcagagaaatacaa
11399
11418
1
6


 


SEQ ID NO: 68
tggcaatgggaaactcgct
5846
5865
SEQ ID NO: 1071
agcgagaatcaccctgcca
8219
8238
1
6


 


SEQ ID NO: 69
aacctctggcatttacttt
5917
5936
SEQ ID NO: 1072
aaaggagatgtcaagggtt
10599
10618
1
6


 


SEQ ID NO: 70
catttactttctctcatga
5926
5945
SEQ ID NO: 1073
tcatttgaaagaataaatg
7026
7045
1
6


 


SEQ ID NO: 71
aaagtcagtgccctgctta
6009
6028
SEQ ID NO: 1074
taagaaccttactgacttt
7784
7803
1
6


 


SEQ ID NO: 72
tcccattttttgagacctt
6322
6341
SEQ ID NO: 1075
aaggacttcaggaatggga
12004
12023
1
6


 


SEQ ID NO: 73
catcaatattgatcaattt
6413
6432
SEQ ID NO: 1076
aaattaaaaagtcttgatg
6732
6751
1
6


 


SEQ ID NO: 74
taaagatagttatgattta
6665
6684
SEQ ID NO: 1077
taaaccaaaacttggttta
9019
9038
1
6


 


SEQ ID NO: 75
tattgatgaaatcattgaa
6713
6732
SEQ ID NO: 1078
ttcaaagacttaaaaaata
8007
8026
1
6


 


SEQ ID NO: 76
atgatctacatttgtttat
6790
6809
SEQ ID NO: 1079
ataaagaaattaaagtcat
7380
7399
1
6


 


SEQ ID NO: 77
agagacacatacagaatat
6919
6938
SEQ ID NO: 1080
atatattgtcagtgcctct
13382
13401
1
6


 


SEQ ID NO: 78
gacacatacagaatataga
6922
6941
SEQ ID NO: 1081
tctaaattcagttcttgtc
11327
11346
1
6


 


SEQ ID NO: 79
agcatgtcaaacactttgt
7054
7073
SEQ ID NO: 1082
acaaagtcagtgccctgct
6007
6026
1
6


 


SEQ ID NO: 80
tttttagaggaaaccaagg
7515
7534
SEQ ID NO: 1083
cctttgtgtacaccaaaaa
11230
11249
1
6


 


SEQ ID NO: 81
ttttagaggaaaccaaggc
7516
7535
SEQ ID NO: 1084
gcctttgtgtacaccaaaa
11229
11248
1
6


 


SEQ ID NO: 82
ggaagatagacttcctgaa
9307
9326
SEQ ID NO: 1085
ttcagaaatactgttttcc
12824
12843
1
6


 


SEQ ID NO: 83
cactgtttctgagtcccag
9334
9353
SEQ ID NO: 1086
ctgggacctaccaagagtg
12523
12542
1
6


 


SEQ ID NO: 84
cacaaatcctttggctgtg
9668
9687
SEQ ID NO: 1087
cacatttcaaggaattgtg
10063
10082
1
6


 


SEQ ID NO: 85
ttcctggatacactgttcc
9853
9872
SEQ ID NO: 1088
ggaactgttgactcaggaa
12569
12588
1
6


 


SEQ ID NO: 86
gaaatctcaagctttctct
10042
10061
SEQ ID NO: 1089
agagccaggtcgagctttc
11044
11063
1
6


 


SEQ ID NO: 87
tttcttcatcttcatctgt
10210
10229
SEQ ID NO: 1090
acagctgaaagagatgaaa
13055
13074
1
6


 


SEQ ID NO: 88
tctaccgctaaaggagcag
10521
10540
SEQ ID NO: 1091
ctgcacgctttgaggtaga
11761
11780
1
6


 


SEQ ID NO: 89
ctaccgctaaaggagcagt
10522
10541
SEQ ID NO: 1092
actgcacgctttgaggtag
11760
11779
1
6


 


SEQ ID NO: 90
agggcctctttttcaccaa
10831
10850
SEQ ID NO: 1093
ttggccaggaagtggccct
10957
10976
1
6


 


SEQ ID NO: 91
ttctccatccctgtaaaag
11265
11284
SEQ ID NO: 1094
ctttttcaccaacggagaa
10838
10857
1
6


 


SEQ ID NO: 92
gaaaaacaaagcagattat
11816
11835
SEQ ID NO: 1095
ataaactgcaagatttttc
13600
13619
1
6


 


SEQ ID NO: 93
actcactcattgattttct
12682
12701
SEQ ID NO: 1096
agaaaatcaggatctgagt
14027
14046
1
6


 


SEQ ID NO: 94
taaactaatagatgtaatc
12890
12909
SEQ ID NO: 1097
gattaccaccagcagttta
13578
13597
1
6


 


SEQ ID NO: 95
caaaacgagcttcaggaag
13200
13219
SEQ ID NO: 1098
cttcgtgaagaatattttg
13260
13279
1
6


 


SEQ ID NO: 96
tggaataatgctcagtgtt
2366
2385
SEQ ID NO: 1099
aacacttacttgaattcca
10662
10681
3
5


 


SEQ ID NO: 97
gatttgaaatccaaagaag
2400
2419
SEQ ID NO: 1100
cttcagagaaatacaaatc
11402
11421
3
5


 


SEQ ID NO: 98
atttgaaatccaaagaagt
2401
2420
SEQ ID NO: 1101
acttcagagaaatacaaat
11401
11420
3
5


 


SEQ ID NO: 99
atcaacagccgcttctttg
990
1009
SEQ ID NO: 1102
caaagaagtcaagattgat
4553
4572
2
5


 


SEQ ID NO: 100
tgttttgaagactctccag
1082
1101
SEQ ID NO: 1103
ctggaaagttaaaacaaca
6955
6974
2
5


 


SEQ ID NO: 101
cccttctgatagatgtggt
1324
1343
SEQ ID NO: 1104
accaaagctggcaccaggg
13961
13980
2
5


 


SEQ ID NO: 102
tgagcaagtgaagaacttt
1868
1887
SEQ ID NO: 1105
aaagccattcagtctctca
12963
12982
2
5


 


SEQ ID NO: 103
atttgaaatccaaagaagt
2401
2420
SEQ ID NO: 1106
acttttctaaacttgaaat
9055
9074
2
5


 


SEQ ID NO: 104
atccaaagaagtcccggaa
2408
2427
SEQ ID NO: 1107
ttccggggaaacctgggat
12721
12740
2
5


 


SEQ ID NO: 105
agagcctacctccgcatct
2430
2449
SEQ ID NO: 1108
agatggtacgttagcctct
11921
11940
2
5


 


SEQ ID NO: 106
aatgcctttgaactcccca
2610
2629
SEQ ID NO: 1109
tgggaactacaatttcatt
7012
7031
2
5


 


SEQ ID NO: 107
gaagtccaaattccggatt
3297
3316
SEQ ID NO: 1110
aatcttcaatttattcttc
13815
13834
2
5


 


SEQ ID NO: 108
tgcaagcagaagccagaag
3496
3515
SEQ ID NO: 1111
cttcaggttccatcgtgca
11376
11395
2
5


 


SEQ ID NO: 109
gaagagaagattgaatttg
3621
3640
SEQ ID NO: 1112
caaaacctactgtctcttc
10459
10478
2
5


 


SEQ ID NO: 110
atgctaaaggcacatatgg
4597
4816
SEQ ID NO: 1113
ccatatgaaagtcaagcat
12656
12675
2
5


 


SEQ ID NO: 111
tccctcacctccacctctg
4737
4756
SEQ ID NO: 1114
cagattctcagatgaggga
8912
8931
2
5


 


SEQ ID NO: 112
atttacagctctgacaagt
5427
5446
SEQ ID NO: 1115
acttttctaaacttgaaat
9055
9074
2
5


 


SEQ ID NO: 113
aggagcctaccaaaataat
5594
5613
SEQ ID NO: 1116
attatgttgaaacagtcct
11830
11849
2
5


 


SEQ ID NO: 114
aaagctgaagcacatcaat
6401
6420
SEQ ID NO: 1117
attgttgctcatctccttt
10194
10213
2
5


 


SEQ ID NO: 115
ctgctggaaacaacgagaa
9418
9437
SEQ ID NO: 1118
ttctgattaccaccagcag
13574
13593
2
5


 


SEQ ID NO: 116
ttgaaggaattcttgaaaa
9582
9601
SEQ ID NO: 1119
ttttaaaagaaatcttcaa
13805
13824
2
5


 


SEQ ID NO: 117
gaagtaaaagaaaattttg
10743
10762
SEQ ID NO: 1120
caaaacctactgtctcttc
10459
10478
2
5


 


SEQ ID NO: 118
tgaagaagatggcaaattt
11984
12003
SEQ ID NO: 1121
aaatgtcagctcttgttca
10894
10913
2
5


 


SEQ ID NO: 119
aggatctgagttattttgc
14035
14054
SEQ ID NO: 1122
gcaagtcagcccagttcct
10920
10939
2
5


 


SEQ ID NO: 120
gtgcccttctcggttgctg
18
37
SEQ ID NO: 1123
cagccattgacatgagcac
5740
5759
1
5


 


SEQ ID NO: 121
ggcgctgcctgcgctgctg
146
165
SEQ ID NO: 1124
cagctccacagactccgcc
3062
3081
1
5


 


SEQ ID NO: 122
ctgcgctgctgctgctgct
154
173
SEQ ID NO: 1125
agcagaaggtgcgaagcag
3224
3243
1
5


 


SEQ ID NO: 123
gctgctggcgggcgccagg
170
189
SEQ ID NO: 1126
cctggattccacatgcagc
11846
11865
1
5


 


SEQ ID NO: 124
aagaggaaatgctggaaaa
193
212
SEQ ID NO: 1127
tttttcttcactacatctt
2584
2603
1
5


 


SEQ ID NO: 125
ctggaaaatgtcagcctgg
204
223
SEQ ID NO: 1128
ccagacttccacatcccag
3915
3934
1
5


 


SEQ ID NO: 126
tggagtccctgggactgct
296
315
SEQ ID NO: 1129
agcatgcctagtttctcca
9945
9964
1
5


 


SEQ ID NO: 127
ggagtccctgggactgctg
297
316
SEQ ID NO: 1130
cagcatgcctagtttctcc
9944
9963
1
5


 


SEQ ID NO: 128
tgggactgctgattcaaga
305
324
SEQ ID NO: 1131
tcttccatcacttgaccca
2042
2061
1
5


 


SEQ ID NO: 129
ctgctgattcaagaagtgc
310
329
SEQ ID NO: 1132
gcacaccttgacattgcag
11079
11098
1
5


 


SEQ ID NO: 130
tgccaccaggatcaactgc
326
345
SEQ ID NO: 1133
gcaggctgaactggtggca
2717
2736
1
5


 


SEQ ID NO: 131
gccaccaggatcaactgca
327
346
SEQ ID NO: 1134
tgcaggctgaactggtggc
2716
2735
1
5


 


SEQ ID NO: 132
tgcaaggttgagctggagg
342
361
SEQ ID NO: 1135
cctccacctctgatctgca
4744
4763
1
5


 


SEQ ID NO: 133
caaggttgagctggaggtt
344
363
SEQ ID NO: 1136
aacccctacatgaagcttg
13755
13774
1
5


 


SEQ ID NO: 134
ctctgcagcttcatcctga
369
388
SEQ ID NO: 1137
tcaggaagcttctcaagag
13211
13230
1
5


 


SEQ ID NO: 135
cagcttcatcctgaagacc
374
393
SEQ ID NO: 1138
ggtcttgagttaaatgctg
4977
4996
1
5


 


SEQ ID NO: 136
gcttcatcctgaagaccag
376
395
SEQ ID NO: 1139
ctggacgctaagaggaagc
855
874
1
5


 


SEQ ID NO: 137
tcatcctgaagaccagcca
379
398
SEQ ID NO: 1140
tggcatggcattatgatga
3604
3623
1
5


 


SEQ ID NO: 138
gaaaaccaagaactctgag
452
471
SEQ ID NO: 1141
ctcaaccttaatgattttc
8286
8305
1
5


 


SEQ ID NO: 139
agaactctgaggagtttgc
460
479
SEQ ID NO: 1142
gcaagctatacagtattct
8377
8396
1
5


 


SEQ ID NO: 140
tctgaggagtttgctgcag
465
484
SEQ ID NO: 1143
ctgcaggggatcccccaga
2526
2545
1
5


 


SEQ ID NO: 141
tttgctgcagccatgtcca
474
493
SEQ ID NO: 1144
tggaagtgtcagtggcaaa
10372
10391
1
5


 


SEQ ID NO: 142
caagaggggcatcatttct
578
597
SEQ ID NO: 1145
agaataaatgacgttcttg
7035
7054
1
5


 


SEQ ID NO: 143
tcactttaccgtcaagacg
674
693
SEQ ID NO: 1146
cgtctacactatcatgtga
4360
4379
1
5


 


SEQ ID NO: 144
tttaccgtcaagacgagga
678
697
SEQ ID NO: 1147
tccttgacatgttgataaa
7366
7385
1
5


 


SEQ ID NO: 145
cactggacgctaagaggaa
853
872
SEQ ID NO: 1148
ttccagaaagcagccagtg
12498
12517
1
5


 


SEQ ID NO: 146
aggaagcatgtggcagaag
867
886
SEQ ID NO: 1149
cttcatacacattaatcct
9988
10007
1
5


 


SEQ ID NO: 147
caaggagcaacacctcttc
893
912
SEQ ID NO: 1150
gaagtagtactgcatcttg
6835
6854
1
5


 


SEQ ID NO: 148
acagactttgaaacttgaa
959
978
SEQ ID NO: 1151
ttcaattcttcaatgctgt
10500
10519
1
5


 


SEQ ID NO: 149
tgatgaagcagtcacatct
1187
1206
SEQ ID NO: 1152
agatttgaggattccatca
7976
7995
1
5


 


SEQ ID NO: 150
agcagtcacatctctcttg
1193
1212
SEQ ID NO: 1153
caaggagaaactgactgct
6524
6543
1
5


 


SEQ ID NO: 151
ccagccccatcactttaca
1231
1250
SEQ ID NO: 1154
tgtagtctcctggtgctgg
5094
5113
1
5


 


SEQ ID NO: 152
ctccactcacatcctccag
1280
1299
SEQ ID NO: 1155
ctggagcttagtaatggag
8709
8728
1
5


 


SEQ ID NO: 153
catgccaacccccttctga
1314
1333
SEQ ID NO: 1156
tcagatgagggaacacatg
8919
8938
1
5


 


SEQ ID NO: 154
gagagatcttcaacatggc
1390
1409
SEQ ID NO: 1157
gccaccctggaactctctc
10869
10888
1
5


 


SEQ ID NO: 155
tcaacatggcgagggatca
1399
1418
SEQ ID NO: 1158
tgatcccacctctcattga
2965
2984
1
5


 


SEQ ID NO: 156
ccaccttgtatgcgctgag
1429
1448
SEQ ID NO: 1159
ctcagggatctgaaggtgg
8187
8206
1
5


 


SEQ ID NO: 157
gtcaacaactatcataaga
1455
1474
SEQ ID NO: 1160
tcttgagttaaatgctgac
4979
4998
1
5


 


SEQ ID NO: 158
tggacattgctaattacct
1501
1520
SEQ ID NO: 1161
aggtatattcgaaagtcca
12799
12818
1
5


 


SEQ ID NO: 159
ggacattgctaattacctg
1502
1521
SEQ ID NO: 1162
caggtatattcgaaagtcc
12798
12817
1
5


 


SEQ ID NO: 160
ttctgcgggtcattggaaa
1573
1592
SEQ ID NO: 1163
tttcacatgccaaggagaa
6514
6533
1
5


 


SEQ ID NO: 161
ccagaactcaagtcttcaa
1620
1639
SEQ ID NO: 1164
ttgaagtgtagtctcctgg
5088
5107
1
5


 


SEQ ID NO: 162
agtcttcaatcctgaaatg
1630
1649
SEQ ID NO: 1165
catttctgattggtggact
7757
7776
1
5


 


SEQ ID NO: 163
tgagcaagtgaagaacttt
1868
1887
SEQ ID NO: 1166
aaagtgccacttttactca
6183
6202
1
5


 


SEQ ID NO: 164
agcaagtgaagaactttgt
1870
1889
SEQ ID NO: 1167
acaaagtcagtgccctgct
6007
6026
1
5


 


SEQ ID NO: 165
tctgaaagaatctcaactt
1964
1983
SEQ ID NO: 1168
aagtccataatggttcaga
12811
12830
1
5


 


SEQ ID NO: 166
actgtcatggacttcagaa
1986
2005
SEQ ID NO: 1169
ttctgaatatattgtcagt
13376
13395
1
5


 


SEQ ID NO: 167
acttgacccagcctcagcc
2051
2070
SEQ ID NO: 1170
ggctcaccctgagagaagt
12391
12410
1
5


 


SEQ ID NO: 168
tccaaataactaccttcct
2096
2115
SEQ ID NO: 1171
aggaagatatgaagatgga
4712
4731
1
5


 


SEQ ID NO: 169
actaccctcactgcctttg
2133
2152
SEQ ID NO: 1172
caaatttgtggagggtagt
10319
10338
1
5


 


SEQ ID NO: 170
ttggatttgcttcagctga
2149
2168
SEQ ID NO: 1173
tcagtataagtacaaccaa
9392
9411
1
5


 


SEQ ID NO: 171
ttggaagctctttttggga
2211
2230
SEQ ID NO: 1174
tcccgattcacgcttccaa
11577
11596
1
5


 


SEQ ID NO: 172
ggaagctctttttgggaag
2213
2232
SEQ ID NO: 1175
cttcagaaagctaccttcc
7929
7948
1
5


 


SEQ ID NO: 173
tttttcccagacagtgtca
2238
2257
SEQ ID NO: 1176
tgaccttctctaagcaaaa
4876
4895
1
5


 


SEQ ID NO: 174
agacagtgtcaacaaagct
2246
2265
SEQ ID NO: 1177
agcttggttttgccagtct
2458
2477
1
5


 


SEQ ID NO: 175
ctttggctataccaaagat
2321
2340
SEQ ID NO: 1178
atctcgtgtctaggaaaag
5968
5987
1
5


 


SEQ ID NO: 176
caaagatgataaacatgag
2333
2352
SEQ ID NO: 1179
ctcaaggataacgtgtttg
12609
12628
1
5


 


SEQ ID NO: 177
gatatggtaaatggaataa
2355
2374
SEQ ID NO: 1180
ttatcttattaattatatc
13079
13098
1
5


 


SEQ ID NO: 178
ggaataatgctcagtgttg
2367
2386
SEQ ID NO: 1181
caacacttacttgaattcc
10661
10680
1
5


 


SEQ ID NO: 179
tttgaaatccaaagaagtc
2402
2421
SEQ ID NO: 1182
gacttcagagaaatacaaa
11400
11419
1
5


 


SEQ ID NO: 180
gatcccccagatgattgga
2534
2553
SEQ ID NO: 1183
tccaatttccctgtggatc
3681
3700
1
5


 


SEQ ID NO: 181
cagatgattggagaggtca
2541
2560
SEQ ID NO: 1184
tgaccacacaaacagtctg
5363
5382
1
5


 


SEQ ID NO: 182
agaatgacttttttcttca
2575
2594
SEQ ID NO: 1185
tgaagtccggattcattct
11015
11034
1
5


 


SEQ ID NO: 183
gaactccccactggagctg
2619
2638
SEQ ID NO: 1186
cagctcaaccgtacagttc
11861
11880
1
5


 


SEQ ID NO: 184
atatcttcatctggagtca
2652
2671
SEQ ID NO: 1187
tgacttcagtgcagaatat
11966
11985
1
5


 


SEQ ID NO: 185
gtcattgctcccggagcca
2667
2886
SEQ ID NO: 1188
tggccccgtttaccatgac
5809
5828
1
5


 


SEQ ID NO: 186
gctgaagtttatcattcct
2873
2892
SEQ ID NO: 1189
aggaggctttaagttcagc
7600
7619
1
5


 


SEQ ID NO: 187
attccttccccaaagagac
2886
2905
SEQ ID NO: 1190
gtctcttcctccatggaat
10470
10489
1
5


 


SEQ ID NO: 188
ctcattgagaacaggcagt
2976
2995
SEQ ID NO: 1191
actgactgcacgctttgag
11756
11775
1
5


 


SEQ ID NO: 189
ttgagcagtattctgtcag
3142
3161
SEQ ID NO: 1192
ctgagagaagtgtcttcaa
12399
12418
1
5


 


SEQ ID NO: 190
accttgtccagtgaagtcc
3285
3304
SEQ ID NO: 1193
ggacggtactgtcccaggt
12784
12803
1
5


 


SEQ ID NO: 191
ccagtgaagtccaaattcc
3292
3311
SEQ ID NO: 1194
ggaaggcagagtttactgg
9148
9167
1
5


 


SEQ ID NO: 192
acattcagaacaagaaaat
3394
3413
SEQ ID NO: 1195
atttcctaaagctggatgt
11167
11186
1
5


 


SEQ ID NO: 193
gaaaaatcaagggtgttat
3463
3482
SEQ ID NO: 1196
ataaactgcaagatttttc
13600
13619
1
5


 


SEQ ID NO: 194
aaatcaagggtgttatttc
3466
3485
SEQ ID NO: 1197
gaaacaatgcattagattt
9745
9764
1
5


 


SEQ ID NO: 195
tggcattatgatgaagaga
3609
3628
SEQ ID NO: 1198
tctcccgtgtataatgcca
11781
11800
1
5


 


SEQ ID NO: 196
aagagaagattgaatttga
3622
3641
SEQ ID NO: 1199
tcaaaacctactgtctctt
10458
10477
1
5


 


SEQ ID NO: 197
aaatgacttccaatttccc
3673
3692
SEQ ID NO: 1200
gggaactacaatttcattt
7013
7032
1
5


 


SEQ ID NO: 198
atgacttccaatttccctg
3675
3694
SEQ ID NO: 1201
caggctgattacgagtcat
4917
4936
1
5


 


SEQ ID NO: 199
acttccaatttccctgtgg
3678
3697
SEQ ID NO: 1202
ccacgaaaaatatggaagt
10360
10379
1
5


 


SEQ ID NO: 200
agttgcaatgagctcatgg
3803
3822
SEQ ID NO: 1203
ccatcagttcagataaact
7989
8008
1
5


 


SEQ ID NO: 201
tttgcaagaccacctcaat
3860
3879
SEQ ID NO: 1204
attgacctgtccattcaaa
13671
13690
1
5


 


SEQ ID NO: 202
gaaggagttcaacctccag
3884
3903
SEQ ID NO: 1205
ctggaattgtcattccttc
11728
11747
1
5


 


SEQ ID NO: 203
acttccacatcccagaaaa
3919
3938
SEQ ID NO: 1206
ttttaacaaaagtggaagt
6821
6840
1
5


 


SEQ ID NO: 204
ctcttcttaaaaagcgatg
3939
3958
SEQ ID NO: 1207
catcactgccaaaggagag
8486
8505
1
5


 


SEQ ID NO: 205
aaaagcgatggccgggtca
3948
3967
SEQ ID NO: 1208
tgactcactcattgatttt
12680
12699
1
5


 


SEQ ID NO: 206
ttcctttgccttttggtgg
4003
4022
SEQ ID NO: 1209
ccacaaacaatgaagggaa
9256
9275
1
5


 


SEQ ID NO: 207
caagtctgtgggattccat
4079
4098
SEQ ID NO: 1210
atgggaaaaaacaggcttg
9566
9585
1
5


 


SEQ ID NO: 208
aagtccctacttttaccat
4117
4136
SEQ ID NO: 1211
atgggaagtataagaactt
4834
4853
1
5


 


SEQ ID NO: 209
tgcctctcctgggtgttct
4159
4178
SEQ ID NO: 1212
agaaaaacaaacacaggca
9643
9662
1
5


 


SEQ ID NO: 210
accagcacagaccatttca
4242
4261
SEQ ID NO: 1213
tgaagtgtagtctcctggt
5089
5108
1
5


 


SEQ ID NO: 211
ccagcacagaccatttcag
4243
4262
SEQ ID NO: 1214
ctgaaatacaatgctctgg
5511
5530
1
5


 


SEQ ID NO: 212
actatcatgtgatgggtct
4367
4386
SEQ ID NO: 1215
agacacctgattttatagt
7948
7967
1
5


 


SEQ ID NO: 213
accacagatgtctgcttca
4496
4515
SEQ ID NO: 1216
tgaaggctgactctgtggt
4282
4301
1
5


 


SEQ ID NO: 214
ccacagatgtctgcttcag
4497
4516
SEQ ID NO: 1217
ctgagcaacaaatttgtgg
10311
10330
1
5


 


SEQ ID NO: 215
tttggactccaaaaagaaa
4520
4539
SEQ ID NO: 1218
tttctctcatgattacaaa
5933
5952
1
5


 


SEQ ID NO: 216
tcaaagaagtcaagattga
4552
4571
SEQ ID NO: 1219
tcaaggataacgtgtttga
12610
12629
1
5


 


SEQ ID NO: 217
atgagaactacgagctgac
4798
4817
SEQ ID NO: 1220
gtcagatattgttgctcat
10187
10206
1
5


 


SEQ ID NO: 218
ttaaaatctgacaccaatg
4818
4837
SEQ ID NO: 1221
cattcattgaagatgttaa
7342
7361
1
5


 


SEQ ID NO: 219
gaagtataagaactttgcc
4838
4857
SEQ ID NO: 1222
ggcaaatttgaaggacttc
11994
12013
1
5


 


SEQ ID NO: 220
aagtataagaactttgcca
4839
4858
SEQ ID NO: 1223
tggcaaatttgaaggactt
11993
12012
1
5


 


SEQ ID NO: 221
ttcttcagcctgctttctg
4941
4960
SEQ ID NO: 1224
cagaatccagatacaagaa
6884
6903
1
5


 


SEQ ID NO: 222
ctggatcactaaattccca
4957
4976
SEQ ID NO: 1225
tgggtctttccagagccag
11033
11052
1
5


 


SEQ ID NO: 223
aaattaatagtggtgctca
5014
5033
SEQ ID NO: 1226
tgagaagccccaagaattt
6248
6267
1
5


 


SEQ ID NO: 224
agtgcaacgaccaacttga
5073
5092
SEQ ID NO: 1227
tcaaattcctggatacact
9848
9867
1
5


 


SEQ ID NO: 225
ctgggaagtgcttatcagg
5238
5257
SEQ ID NO: 1228
cctgaccttcacataccag
8310
8329
1
5


 


SEQ ID NO: 226
gcaaaaacattttcaactt
5278
5297
SEQ ID NO: 1229
aagtaaaagaaaattttgc
10744
10763
1
5


 


SEQ ID NO: 227
aaaaacattttcaacttca
5280
5299
SEQ ID NO: 1230
tgaagtaaaagaaaatttt
10742
10761
1
5


 


SEQ ID NO: 228
tcagtcaagaaggacttaa
5302
5321
SEQ ID NO: 1231
ttaaggacttccattctga
13363
13382
1
5


 


SEQ ID NO: 229
tcaaatgacatgatgggct
5325
5344
SEQ ID NO: 1232
agcccatcaatatcattga
6205
6224
1
5


 


SEQ ID NO: 230
cacacaaacagtctgaaca
5367
5386
SEQ ID NO: 1233
tgtttcaactgcctttgtg
11219
11238
1
5


 


SEQ ID NO: 231
tcttcaaaacttgacaaca
5409
5428
SEQ ID NO: 1234
tgttttcctatttccaaga
12835
12854
1
5


 


SEQ ID NO: 232
caagttttataagcaaact
5441
5460
SEQ ID NO: 1235
agttattttgctaaacttg
14043
14062
1
5


 


SEQ ID NO: 233
tggtaactactttaaacag
5488
5507
SEQ ID NO: 1236
ctgtttttagaggaaacca
7512
7531
1
5


 


SEQ ID NO: 234
aacagtgacctgaaataca
5502
5521
SEQ ID NO: 1237
tgtatagcaaattcctgtt
5890
5909
1
5


 


SEQ ID NO: 235
gggaaactacggctagaac
5544
5563
SEQ ID NO: 1238
gttccttccatgatttccc
10933
10952
1
5


 


SEQ ID NO: 236
aacacatctatgccatctc
5620
5639
SEQ ID NO: 1239
gagacagcatcttcgtgtt
11204
11223
1
5


 


SEQ ID NO: 237
tcagcaagctataaagcag
5652
5671
SEQ ID NO: 1240
ctgctaagaaccttactga
7780
7799
1
5


 


SEQ ID NO: 238
gcagacactgttgctaagg
5667
5686
SEQ ID NO: 1241
cctttcaagcactgactgc
11746
11765
1
5


 


SEQ ID NO: 239
tctggggagaacatactgg
5866
5885
SEQ ID NO: 1242
ccaggttttccacaccaga
8038
8057
1
5


 


SEQ ID NO: 240
ttctctcatgattacaaag
5934
5953
SEQ ID NO: 1243
ctttttcaccaacggagaa
10838
10857
1
5


 


SEQ ID NO: 241
ctgagcagacaggcacctg
6034
6053
SEQ ID NO: 1244
caggaggctttaagttcag
7599
7618
1
5


 


SEQ ID NO: 242
caatttaacaacaatgaat
6066
6085
SEQ ID NO: 1245
attccttcctttacaattg
8082
8101
1
5


 


SEQ ID NO: 243
tggacgaactctggctgac
6140
6159
SEQ ID NO: 1246
gtcagcccagttccttcca
10924
10943
1
5


 


SEQ ID NO: 244
cttttactcagtgagccca
6192
6211
SEQ ID NO: 1247
tgggctaaacgtatgaaag
7827
7846
1
5


 


SEQ ID NO: 245
tcattgatgctttagagat
6217
6236
SEQ ID NO: 1248
atcttcataagttcaatga
13174
13193
1
5


 


SEQ ID NO: 246
aaaaccaagatgttcactc
6295
6314
SEQ ID NO: 1249
gagtgaaatgctgtttttt
8630
8649
1
5


 


SEQ ID NO: 247
aggaatcgacaaaccatta
6357
6376
SEQ ID NO: 1250
taatgattttcaagttcct
8294
8313
1
5


 


SEQ ID NO: 248
tagttgtactggaaaacgt
6376
6395
SEQ ID NO: 1251
acgttagcctctaagacta
11928
11947
1
5


 


SEQ ID NO: 249
ggaaaacgtacagagaaag
6386
6405
SEQ ID NO: 1252
cttttacaattcattttcc
13014
13033
1
5


 


SEQ ID NO: 250
gaaaacgtacagagaaagc
6387
6406
SEQ ID NO: 1253
gctttctcttccacatttc
10052
10071
1
5


 


SEQ ID NO: 251
aaagctgaagcacatcaat
6401
6420
SEQ ID NO: 1254
attgatgttagagtgcttt
6984
7003
1
5


 


SEQ ID NO: 252
aagctgaagcacatcaata
6402
6421
SEQ ID NO: 1255
tattgatgttagagtgctt
6983
7002
1
5


 


SEQ ID NO: 253
tgaagcacatcaataattga
6406
6425
SEQ ID NO: 1256
tcaaccttaatgattttca
8287
8306
1
5


 


SEQ ID NO: 254
atcaatattgatcaatttg
6414
6433
SEQ ID NO: 1257
caaagccatcactgatgat
1660
1679
1
5


 


SEQ ID NO: 255
taatgattatctgaattca
6476
6495
SEQ ID NO: 1258
tgaaatcattgaaaaatta
6719
6738
1
5


 


SEQ ID NO: 256
gattatctgaattcattca
6480
6499
SEQ ID NO: 1259
tgaagtagctgagaaaatc
7094
7113
1
5


 


SEQ ID NO: 257
aattgggagagacaagttt
6498
6517
SEQ ID NO: 1260
aaacattcctttaacaatt
9488
9507
1
5


 


SEQ ID NO: 258
aaaatagctattgctaata
6693
6712
SEQ ID NO: 1261
tattgaaaatattgatttt
6806
6825
1
5


 


SEQ ID NO: 259
aaaattaaaaagtcttgat
6731
6750
SEQ ID NO: 1262
atcatatccgtgtaatttt
6757
6776
1
5


 


SEQ ID NO: 260
ttgaaaatattgattttaa
6808
6827
SEQ ID NO: 1263
ttaatcttcataagttcaa
13171
13190
1
5


 


SEQ ID NO: 261
agacatccagcacctagct
6938
6957
SEQ ID NO: 1264
agcttggttttgccagtct
2458
2477
1
5


 


SEQ ID NO: 262
caatttcatttgaaagaat
7021
7040
SEQ ID NO: 1265
attccttcctttacaattg
8082
8101
1
5


 


SEQ ID NO: 263
aggttttaatggataaatt
7174
7193
SEQ ID NO: 1266
aattgttgaaagaaaacct
13147
13166
1
5


 


SEQ ID NO: 264
cagaagctaagcaatgtcc
7233
7252
SEQ ID NO: 1267
ggacaaggcccagaatctg
12545
12564
1
5


 


SEQ ID NO: 265
taagataaaagattacttt
7262
7281
SEQ ID NO: 1268
aaagaaaacctatgcctta
13155
13174
1
5


 


SEQ ID NO: 266
aaagattactttgagaaat
7269
7288
SEQ ID NO: 1269
atttcttaaacattccttt
9481
9500
1
5


 


SEQ ID NO: 267
gagaaattagttggattta
7281
7300
SEQ ID NO: 1270
taaagccattcagtctctc
12962
12981
1
5


 


SEQ ID NO: 268
atttattgatgatgctgtc
7295
7314
SEQ ID NO: 1271
gacatgttgataaagaaat
7371
7390
1
5


 


SEQ ID NO: 269
gaattatcttttaaaacat
7326
7345
SEQ ID NO: 1272
atgtatcaaatggacattc
7677
7696
1
5


 


SEQ ID NO: 270
ttaccaccagtttgtagat
7403
7422
SEQ ID NO: 1273
atctggaaccttgaagtaa
10731
10750
1
5


 


SEQ ID NO: 271
ttgcagtgtatctggaaag
7540
7559
SEQ ID NO: 1274
cttttcacattagatgcaa
8412
8431
1
5


 


SEQ ID NO: 272
cattcagcaggaacttcaa
7691
7710
SEQ ID NO: 1275
ttgaaggacttcaggaatg
12001
12020
1
5


 


SEQ ID NO: 273
acacctgattttatagtcc
7950
7969
SEQ ID NO: 1276
ggactcaaggataacgtgt
12606
12625
1
5


 


SEQ ID NO: 274
ggattccatcagttcagat
7984
8003
SEQ ID NO: 1277
atcttcaatgattatatcc
13116
13135
1
5


 


SEQ ID NO: 275
ttgtagaaatgaaagtaaa
8104
8123
SEQ ID NO: 1278
tttatgattatgtcaacaa
12352
12371
1
5


 


SEQ ID NO: 276
ctgaacagtgagctgcagt
8148
8167
SEQ ID NO: 1279
actggacttctctagtcag
8801
8820
1
5


 


SEQ ID NO: 277
aatccaatctcctcttttc
8399
8418
SEQ ID NO: 1280
gaaaaatgaagtccggatt
11009
11028
1
5


 


SEQ ID NO: 278
attttgattttcaagcaaa
8524
8543
SEQ ID NO: 1281
tttgcaagttaaagaaaat
14015
14034
1
5


 


SEQ ID NO: 279
ttttgattttcaagcaaat
8525
8544
SEQ ID NO: 1282
atttgatttaagtgtaaaa
9614
9633
1
5


 


SEQ ID NO: 280
tgattttcaagcaaatgca
8528
8547
SEQ ID NO: 1283
tgcaagttaaagaaaatca
14017
14036
1
5


 


SEQ ID NO: 281
atgctgttttttggaaatg
8637
8656
SEQ ID NO: 1284
cattggtaggagacagcat
11195
11214
1
5


 


SEQ ID NO: 282
tgctgttttttggaaatgc
8638
8657
SEQ ID NO: 1285
gcattggtaggagacagca
11194
11213
1
5


 


SEQ ID NO: 283
aaaaaaatacactggagct
8698
8717
SEQ ID NO: 1286
agctagagggcctcttttt
10825
10844
1
5


 


SEQ ID NO: 284
actggagcttagtaatgga
8708
8727
SEQ ID NO: 1287
tccactcacatcctccagt
1281
1300
1
5


 


SEQ ID NO: 285
cttctggaaaagggtcatg
8878
8897
SEQ ID NO: 1288
catgaacccctacatgaag
13751
13770
1
5


 


SEQ ID NO: 286
ggaaaagggtcatggaaat
8883
8902
SEQ ID NO: 1289
atttgaaagttcgttttcc
9274
9293
1
5


 


SEQ ID NO: 287
gggcctgccccagattctc
8902
8921
SEQ ID NO: 1290
gagaacattatggaggccc
9432
9451
1
5


 


SEQ ID NO: 288
ttctcagatgagggaacac
8916
8935
SEQ ID NO: 1291
gtgtcttcaaagctgagaa
12408
12427
1
5


 


SEQ ID NO: 289
gatgagggaacacatgaat
8922
8941
SEQ ID NO: 1292
attccagcttccccacatc
8330
8349
1
5


 


SEQ ID NO: 290
ctttggactgtccaataag
8978
8997
SEQ ID NO: 1293
cttatgggatttcctaaag
11159
11178
1
5


 


SEQ ID NO: 291
gcatccacaaacaatgaag
9252
9271
SEQ ID NO: 1294
cttcatctgtcattgatgc
10219
10238
1
5


 


SEQ ID NO: 292
cacaaacaatgaagggaat
9257
9276
SEQ ID NO: 1295
attccctgaagttgatgtg
11480
11499
1
5


 


SEQ ID NO: 293
ccaaaatttctctgctgga
9407
9426
SEQ ID NO: 1296
tccatcacaaatcctttgg
9663
9682
1
5


 


SEQ ID NO: 294
caaaatttctctgctggaa
9408
9427
SEQ ID NO: 1297
ttccatcacaaatcctttg
9662
9681
1
5


 


SEQ ID NO: 295
tctgctggaaacaacgaga
9417
9436
SEQ ID NO: 1298
tctcaagagttacagcaga
13221
13240
1
5


 


SEQ ID NO: 296
ctgctggaaacaacgagaa
9418
9437
SEQ ID NO: 1299
ttctcaagagttacagcag
13220
13239
1
5


 


SEQ ID NO: 297
agaacattatggaggccca
9433
9452
SEQ ID NO: 1300
tgggcctgccccagattct
8901
8920
1
5


 


SEQ ID NO: 298
agaagcaaatctggatttc
9467
9486
SEQ ID NO: 1301
gaaatcttcaatttattct
13813
13832
1
5


 


SEQ ID NO: 299
tttctctctatgggaaaaa
9557
9576
SEQ ID NO: 1302
tttttgcaagttaaagaaa
14013
14032
1
5


 


SEQ ID NO: 300
tcagagcatcaaatccttt
9704
9723
SEQ ID NO: 1303
aaagaaaatcaggatctga
14025
14044
1
5


 


SEQ ID NO: 301
cagaaacaatgcattagat
9743
9762
SEQ ID NO: 1304
atctatgccatctcttctg
5625
5644
1
5


 


SEQ ID NO: 302
tacacattaatcctgccat
9993
10012
SEQ ID NO: 1305
atggagtctttattgtgta
14081
14100
1
5


 


SEQ ID NO: 303
agtcagatattgttgctca
10186
10205
SEQ ID NO: 1306
tgagaactacgagctgact
4799
4818
1
5


 


SEQ ID NO: 304
ggagggtagtcataacagt
10328
10347
SEQ ID NO: 1307
actggtggcaaaaccctcc
2726
2745
1
5


 


SEQ ID NO: 305
caaaagccgaaattccaat
10396
10415
SEQ ID NO: 1308
attgaagtacctacttttg
8358
8377
1
5


 


SEQ ID NO: 306
aaaagccgaaattccaatt
10397
10416
SEQ ID NO: 1309
aattgaagtacctactttt
8357
8376
1
5


 


SEQ ID NO: 307
ttcaagcaagaacttaatg
10428
10447
SEQ ID NO: 1310
cattatggcccttcgtgaa
13250
13269
1
5


 


SEQ ID NO: 308
cctcttacttttccattga
10570
10589
SEQ ID NO: 1311
tcaaaagaagcccaagagg
12939
12958
1
5


 


SEQ ID NO: 309
tgaggccaacacttacttg
10655
10674
SEQ ID NO: 1312
caagcatctgattgactca
12668
12687
1
5


 


SEQ ID NO: 310
cacttacttgaattccaag
10664
10683
SEQ ID NO: 1313
cttgaacacaaagtcagtg
6000
6019
1
5


 


SEQ ID NO: 311
gaagtaaaagaaaattttg
10743
10762
SEQ ID NO: 1314
caaaaacattttcaacttc
5279
5298
1
5


 


SEQ ID NO: 312
cctggaactctctccatgg
10874
10893
SEQ ID NO: 1315
ccatttacagatcttcagg
11364
11383
1
5


 


SEQ ID NO: 313
agctggatgtaaccaccag
11176
11195
SEQ ID NO: 1316
ctggattccacatgcagct
11847
11866
1
5


 


SEQ ID NO: 314
aaaattccctgaagttgat
11477
11496
SEQ ID NO: 1317
atcatatccgtgtaatttt
6757
6776
1
5


 


SEQ ID NO: 315
cagatggcattgctgcttt
11605
11624
SEQ ID NO: 1318
aaagctgagaagaaatctg
12416
12435
1
5


 


SEQ ID NO: 316
agatggcattgctgctttg
11606
11625
SEQ ID NO: 1319
caaagctgagaagaaatct
12415
12434
1
5


 


SEQ ID NO: 317
tgttgaaacagtcctggat
11834
11853
SEQ ID NO: 1320
atccaagatgagatcaaca
13095
13114
1
5


 


SEQ ID NO: 318
catattcaaaactgagttg
12221
12240
SEQ ID NO: 1321
caactctctgattactatg
13623
13642
1
5


 


SEQ ID NO: 319
aaagatttatcaaaagaag
12930
12949
SEQ ID NO: 1322
cttcaatttattcttcttt
13818
13837
1
5


 


SEQ ID NO: 320
attttccaactaatagaag
13026
13045
SEQ ID NO: 1323
cttcaaagacttaaaaaat
8006
8025
1
5


 


SEQ ID NO: 321
aattatatccaagatgaga
13089
13108
SEQ ID NO: 1324
tctcttcctccatggaatt
10471
10490
1
5


 


SEQ ID NO: 322
ttcaggaagcttctcaaga
13210
13229
SEQ ID NO: 1325
tcttcataagttcaatgaa
13175
13194
1
5


 


SEQ ID NO: 323
ttgagcaatttctgcacag
13429
13448
SEQ ID NO: 1326
ctgttgaaagatttatcaa
12924
12943
1
5


 


SEQ ID NO: 324
ctgatatacatcacggagt
13704
13723
SEQ ID NO: 1327
actcaatggtgaaattcag
7457
7476
1
5


 


SEQ ID NO: 325
acatcacggagttactgaa
13711
13730
SEQ ID NO: 1328
ttcagaagctaagcaatgt
7231
7250
1
5


 


SEQ ID NO: 326
actgcctatattgataaaa
13874
13893
SEQ ID NO: 1329
ttttggcaagctatacagt
8372
8391
1
5


 


SEQ ID NO: 327
aggatggcattttttgcaa
14003
14022
SEQ ID NO: 1330
ttgcaagcaagtctttcct
3005
3024
1
5


 


SEQ ID NO: 328
ttttttgcaagttaaagaa
14012
14031
SEQ ID NO: 1331
ttctctctatgggaaaaaa
9558
9577
1
5


 


SEQ ID NO: 329
tccagaactcaagtcttca
1619
1638
SEQ ID NO: 1332
tgaaatgctgttttttgga
8633
8652
3
4


 


SEQ ID NO: 330
agttagtgaaagaagttct
1948
1967
SEQ ID NO: 1333
agaatctgtaccaggaact
12556
12575
3
4


 


SEQ ID NO: 331
atttacagctctgacaagt
5427
5446
SEQ ID NO: 1334
acttcagagaaatacaaat
11401
11420
3
4


 


SEQ ID NO: 332
gattatctgaattcattca
6480
6499
SEQ ID NO: 1335
tgaaaccaatgacaaaatc
7421
7440
3
4


 


SEQ ID NO: 333
gtgcccttctcggttgctg
18
37
SEQ ID NO: 1336
cagctgagcagacaggcac
6031
6050
2
4


 


SEQ ID NO: 334
attcaagcacctccggaag
245
264
SEQ ID NO: 1337
cttcataagttcaatgaat
13176
13195
2
4


 


SEQ ID NO: 335
gactgctgattcaagaagt
308
327
SEQ ID NO: 1338
acttcccaactctcaagtc
13407
13426
2
4


 


SEQ ID NO: 336
ttgctgcagccatgtccag
475
494
SEQ ID NO: 1339
ctgggcagctgtatagcaa
5881
5900
2
4


 


SEQ ID NO: 337
agaaagatgaacctactta
547
566
SEQ ID NO: 1340
taagtatgatttcaattct
10490
10509
2
4


 


SEQ ID NO: 338
tgaagactctccaggaact
1087
1105
SEQ ID NO: 1341
agttcaatgaatttattca
13183
13202
2
4


 


SEQ ID NO: 339
atctctcttgccacagctg
1202
1221
SEQ ID NO: 1342
cagcccagccatttgagat
9229
9248
2
4


 


SEQ ID NO: 340
tctctcttgccacagctga
1203
1222
SEQ ID NO: 1343
tcagcccagccatttgaga
9228
9247
2
4


 


SEQ ID NO: 341
tgaggtgtccagccccatc
1223
1242
SEQ ID NO: 1344
gatgggaaagccgccctca
5208
5227
2
4


 


SEQ ID NO: 342
ccagaactcaagtcttcaa
1620
1639
SEQ ID NO: 1345
ttgaaagcagaacctctgg
5907
5926
2
4


 


SEQ ID NO: 343
ctgaaaaagttagtgaaag
1941
1960
SEQ ID NO: 1346
ctttctcgggaatattcag
10623
10642
2
4


 


SEQ ID NO: 344
tttttcccagacagtgtca
2238
2257
SEQ ID NO: 1347
tgacaggcattttgaaaaa
9722
9741
2
4


 


SEQ ID NO: 345
ttttcccagacagtgtcaa
2239
2258
SEQ ID NO: 1348
ttgacaggcattttgaaaa
9721
9740
2
4


 


SEQ ID NO: 346
cattcagaacaagaaaatt
3395
3414
SEQ ID NO: 1349
aattccaattttgagaatg
10406
10425
2
4


 


SEQ ID NO: 347
tgaagagaagattgaattt
3620
3639
SEQ ID NO: 1350
aaatgtcagctcttgttca
10894
10913
2
4


 


SEQ ID NO: 348
tttgaatggaacacaggca
3636
3655
SEQ ID NO: 1351
tgccagtttgaaaaacaaa
11807
11826
2
4


 


SEQ ID NO: 349
ttctagattcgaatatcaa
4399
4418
SEQ ID NO: 1352
ttgacatgttgataaagaa
7369
7388
2
4


 


SEQ ID NO: 350
gattcgaatatcaaattca
4404
4423
SEQ ID NO: 1353
tgaagtagaccaacaaatc
7154
7173
2
4


 


SEQ ID NO: 351
tgcaacgaccaacttgaag
5075
5094
SEQ ID NO: 1354
cttcaggttccatcgtgca
11376
11395
2
4


 


SEQ ID NO: 352
ttaagctctcaaatgacat
5317
5336
SEQ ID NO: 1355
atgttgataaagaaattaa
7374
7393
2
4


 


SEQ ID NO: 353
caatttaacaacaatgaat
6066
6085
SEQ ID NO: 1356
attcaaactgcctatattg
13868
13887
2
4


 


SEQ ID NO: 354
tgaatacagccaggacttg
6080
6099
SEQ ID NO: 1357
caagagcacacggtcttca
10679
10698
2
4


 


SEQ ID NO: 355
catcaatattgatcaattt
6413
6432
SEQ ID NO: 1358
aaattccctgaagttgatg
11478
11497
2
4


 


SEQ ID NO: 356
ttgagcatgtcaaacactt
7051
7070
SEQ ID NO: 1359
aagtaagtgctaggttcaa
9373
9392
2
4


 


SEQ ID NO: 357
tgaaggagactattcagaa
7219
7238
SEQ ID NO: 1360
ttctgcacagaaatattca
13438
13457
2
4


 


SEQ ID NO: 358
ttcaggctcttcagaaagc
7921
7940
SEQ ID NO: 1361
gcttgctaacctctctgaa
12304
12323
2
4


 


SEQ ID NO: 359
tccacaaattgaacatccc
8779
8798
SEQ ID NO: 1362
gggacctaccaagagtgga
12525
12544
2
4


 


SEQ ID NO: 360
tgaataccaatgctgaact
10159
10178
SEQ ID NO: 1363
agttcaatgaatttattca
13183
13202
2
4


 


SEQ ID NO: 361
taaactaatagatgtaatc
12890
12909
SEQ ID NO: 1364
gattactatgaaaaattta
13632
13651
2
4


 


SEQ ID NO: 362
ttgacctgtccattcaaaa
13672
13691
SEQ ID NO: 1365
ttttaaaagaaatcttcaa
13805
13824
2
4


 


SEQ ID NO: 363
gggctgagtgcccttctcg
11
30
SEQ ID NO: 1366
cgaggccaggccgcagccc
76
95
1
4


 


SEQ ID NO: 364
ggctgagtgcccttctcgg
12
31
SEQ ID NO: 1367
ccgaggccaggccgcagcc
75
94
1
4


 


SEQ ID NO: 365
ctgagtgcccttctcggtt
14
33
SEQ ID NO: 1368
aaccgtgcctgaatctcag
11549
11568
1
4


 


SEQ ID NO: 366
tctcggttgctgccgctga
25
44
SEQ ID NO: 1369
tcagctgacctcatcgaga
2160
2179
1
4


 


SEQ ID NO: 367
caggccgcagcccaggagc
82
101
SEQ ID NO: 1370
gctctgcagcttcatcctg
368
387
1
4


 


SEQ ID NO: 368
gctggcgctgcctgcgctg
143
162
SEQ ID NO: 1371
cagcacagaccatttcagc
4244
4263
1
4


 


SEQ ID NO: 369
tgctgctggcgggcgccag
169
188
SEQ ID NO: 1372
ctggatgtaaccaccagca
11178
11197
1
4


 


SEQ ID NO: 370
ctggtctgtccaaaagatg
219
238
SEQ ID NO: 1373
catcctgaagaccagccag
380
399
1
4


 


SEQ ID NO: 371
ctgagagttccagtggagt
283
302
SEQ ID NO: 1374
actcaccctggacattcag
3383
3402
1
4


 


SEQ ID NO: 372
tccagtggagtccctggga
291
310
SEQ ID NO: 1375
tcccggagccaaggctgga
2675
2694
1
4


 


SEQ ID NO: 373
aggttgagctggaggttcc
346
365
SEQ ID NO: 1376
ggaaccctctccctcacct
4728
4747
1
4


 


SEQ ID NO: 374
tgagctggaggttccccag
350
369
SEQ ID NO: 1377
ctgggaggcatgatgctca
9163
9182
1
4


 


SEQ ID NO: 375
tctgcagcttcatcctgaa
370
389
SEQ ID NO: 1378
ttcaaatataatcggcaga
3261
3280
1
4


 


SEQ ID NO: 376
gccagtgcaccctgaaaga
394
413
SEQ ID NO: 1379
tcttccgttctgtaatggc
5794
5813
1
4


 


SEQ ID NO: 377
ctctgaggagtttgctgca
464
483
SEQ ID NO: 1380
tgcaagaatattttgagag
6340
6359
1
4


 


SEQ ID NO: 378
aggtatgagctcaagctgg
492
511
SEQ ID NO: 1381
ccagtttccggggaaacct
12716
12735
1
4


 


SEQ ID NO: 379
tcctttacccggagaaaga
535
554
SEQ ID NO: 1382
tctttttgggaagcaagga
2219
2238
1
4


 


SEQ ID NO: 380
catcaagaggggcatcatt
575
594
SEQ ID NO: 1383
aatggtcaagttcctgatg
2277
2296
1
4


 


SEQ ID NO: 381
tcctggttcccccagagac
601
620
SEQ ID NO: 1384
gtctctgaactcagaagga
13988
14007
1
4


 


SEQ ID NO: 382
aagaagccaagcaagtgtt
622
641
SEQ ID NO: 1385
aacaaataaatggagtctt
14072
14091
1
4


 


SEQ ID NO: 383
aagcaagtgttgtttctgg
630
649
SEQ ID NO: 1386
ccagagccaggtcgagctt
11042
11061
1
4


 


SEQ ID NO: 384
tctggataccgtgtatgga
644
663
SEQ ID NO: 1387
tccatgtcccatttacaga
11356
11375
1
4


 


SEQ ID NO: 385
ccactcactttaccgtcaa
670
689
SEQ ID NO: 1388
ttgattttaacaaaagtgg
6817
6836
1
4


 


SEQ ID NO: 386
aggaagggcaatgtggcaa
693
712
SEQ ID NO: 1389
ttgcaagcaagtctttcct
3005
3024
1
4


 


SEQ ID NO: 387
gcaatgtggcaacagaaat
700
719
SEQ ID NO: 1390
atttccataccccgtttgc
3480
3499
1
4


 


SEQ ID NO: 388
caatgtggcaacagaaata
701
720
SEQ ID NO: 1391
tattcttcttttccaattg
13826
13845
1
4


 


SEQ ID NO: 389
tggcaacagaaatatccac
706
725
SEQ ID NO: 1392
gtggcttcccatattgcca
1887
1906
1
4


 


SEQ ID NO: 390
agagacctgggccagtgtg
729
748
SEQ ID NO: 1393
cacattacatttggtctct
2930
2949
1
4


 


SEQ ID NO: 391
tgtgatcgcttcaagccca
744
763
SEQ ID NO: 1394
tgggaaagccgccctcaca
5210
5229
1
4


 


SEQ ID NO: 392
gtgatcgcttcaagcccat
745
764
SEQ ID NO: 1395
atgggaaagccgccctcac
5209
5228
1
4


 


SEQ ID NO: 393
cagcccacttgctctcatc
776
795
SEQ ID NO: 1396
gatgctgaacagtgagctg
8144
8163
1
4


 


SEQ ID NO: 394
gctctcatcaaaggcatga
786
805
SEQ ID NO: 1397
tcataacagtactgtgagc
10337
10356
1
4


 


SEQ ID NO: 395
ccttgtcaactctgatcag
811
830
SEQ ID NO: 1398
ctgagtgggtttatcaagg
12445
12464
1
4


 


SEQ ID NO: 396
cttgtcaactctgatcagc
812
831
SEQ ID NO: 1399
gctgagtgggtttatcaag
12444
12463
1
4


 


SEQ ID NO: 397
agccatctgcaaggagcaa
884
903
SEQ ID NO: 1400
ttgcaatgagctcatggct
3805
3824
1
4


 


SEQ ID NO: 398
gccatctgcaaggagcaac
885
904
SEQ ID NO: 1401
gttgcaatgagctcatggc
3804
3823
1
4


 


SEQ ID NO: 399
cttcctgcctttctcctac
908
927
SEQ ID NO: 1402
gtaggaataaatggagaag
9453
9472
1
4


 


SEQ ID NO: 400
ctttctcctacaagaataa
916
935
SEQ ID NO: 1403
ttattgctgaatccaaaag
13648
13667
1
4


 


SEQ ID NO: 401
gatcaacagccgcttcttt
989
1008
SEQ ID NO: 1404
aaagccatcactgatgatc
1661
1680
1
4


 


SEQ ID NO: 402
atcaacagccgcttctttg
990
1009
SEQ ID NO: 1405
caaagccatcactgatgat
1660
1679
1
4


 


SEQ ID NO: 403
acagccgcttctttggtga
994
1013
SEQ ID NO: 1406
tcacaaatcctttggctgt
9667
9686
1
4


 


SEQ ID NO: 404
aagatgggcctcgcatttg
1023
1042
SEQ ID NO: 1407
caaaatagaagggaatctt
2069
2088
1
4


 


SEQ ID NO: 405
tgttttgaagactctccag
1082
1101
SEQ ID NO: 1408
ctggtaactactttaaaca
5487
5506
1
4


 


SEQ ID NO: 406
ttgaagactctccaggaac
1086
1105
SEQ ID NO: 1409
gttcaatgaatttattcaa
13184
13203
1
4


 


SEQ ID NO: 407
aactgaaaaaactaaccat
1102
1121
SEQ ID NO: 1410
atggcattttttgcaagtt
14006
14025
1
4


 


SEQ ID NO: 408
ctgaaaaaactaaccatct
1104
1123
SEQ ID NO: 1411
agattgatgggcagttcag
4564
4583
1
4


 


SEQ ID NO: 409
aaaactaaccatctctgag
1109
1128
SEQ ID NO: 1412
ctcaaagaatgactttttt
2570
2589
1
4


 


SEQ ID NO: 410
tgagcaaaatatccagaga
1124
1143
SEQ ID NO: 1413
tctccagataaaaaactca
12201
12220
1
4


 


SEQ ID NO: 411
caataagctggttactgag
1154
1173
SEQ ID NO: 1414
ctcagatcaaagttaattg
12265
12284
1
4


 


SEQ ID NO: 412
tactgagctgagaggcctc
1166
1185
SEQ ID NO: 1415
gagggtagtcataacagta
10329
10348
1
4


 


SEQ ID NO: 413
gcctcagtgatgaagcagt
1180
1199
SEQ ID NO: 1416
actgttgactcaggaaggc
12572
12591
1
4


 


SEQ ID NO: 414
agtcacatctctcttgcca
1196
1215
SEQ ID NO: 1417
tggccacatagcatggact
8858
8877
1
4


 


SEQ ID NO: 415
atctctcttgccacagctg
1202
1221
SEQ ID NO: 1418
cagctgacctcatcgagat
2161
2180
1
4


 


SEQ ID NO: 416
tctctcttgccacagctga
1203
1222
SEQ ID NO: 1419
tcagctgacctcatcgaga
2160
2179
1
4


 


SEQ ID NO: 417
tgccacagctgattgaggt
1210
1229
SEQ ID NO: 1420
acctgcaccaaagctggca
13955
13974
1
4


 


SEQ ID NO: 418
gccacagctgattgaggtg
1211
1230
SEQ ID NO: 1421
caccaaaaaccccaatggc
11240
11259
1
4


 


SEQ ID NO: 419
tcactttacaagccttggt
1240
1259
SEQ ID NO: 1422
accagatgctgaacagtga
8140
8159
1
4


 


SEQ ID NO: 420
cccttctgatagatgtggt
1324
1343
SEQ ID NO: 1423
accacttacagctagaggg
10816
10835
1
4


 


SEQ ID NO: 421
gtcacctacctggtggccc
1341
1360
SEQ ID NO: 1424
gggcgacctaagttgtgac
3431
3450
1
4


 


SEQ ID NO: 422
ccttgtatgcgctgagcca
1432
1451
SEQ ID NO: 1425
tggctggtaacctaaaagg
5578
5597
1
4


 


SEQ ID NO: 423
gacaaaccctacagggacc
1472
1491
SEQ ID NO: 1426
ggtcctttatgattatgtc
12347
12366
1
4


 


SEQ ID NO: 424
tgctaattacctgatggaa
1508
1527
SEQ ID NO: 1427
ttcccaaaagcagtcagca
9930
9949
1
4


 


SEQ ID NO: 425
tgactgcactggggatgaa
1538
1557
SEQ ID NO: 1428
ttcaggtccatgcaagtca
10909
10928
1
4


 


SEQ ID NO: 426
actgcactggggatgaaga
1540
1559
SEQ ID NO: 1429
tcttgaacacaaagtcagt
5999
6018
1
4


 


SEQ ID NO: 427
atgaagattacacctattt
1552
1571
SEQ ID NO: 1430
aaatgaaagtaaagatcat
8110
8129
1
4


 


SEQ ID NO: 428
accatggagcagttaactc
1602
1621
SEQ ID NO: 1431
gagtaaaccaaaacttggt
9016
9035
1
4


 


SEQ ID NO: 429
gcagttaactccagaactc
1610
1629
SEQ ID NO: 1432
gagttactgaaaaagctgc
13719
13738
1
4


 


SEQ ID NO: 430
cagaactcaagtcttcaat
1621
1640
SEQ ID NO: 1433
attggatatccaagatctg
1925
1944
1
4


 


SEQ ID NO: 431
caggctctgcggaaaatgg
1695
1714
SEQ ID NO: 1434
ccatgacctccagctcctg
2477
2496
1
4


 


SEQ ID NO: 432
ccaggaggttcttcttcag
1730
1749
SEQ ID NO: 1435
ctgaaatacaatgctctgg
5511
5530
1
4


 


SEQ ID NO: 433
ggttcttcttcagactttc
1736
1755
SEQ ID NO: 1436
gaaaaacttggaaacaacc
4431
4450
1
4


 


SEQ ID NO: 434
tttccttgatgatgcttct
1751
1770
SEQ ID NO: 1437
agaatccagatacaagaaa
6885
6904
1
4


 


SEQ ID NO: 435
ggagataagcgactggctg
1773
1792
SEQ ID NO: 1438
cagcatgcctagtttctcc
9944
9963
1
4


 


SEQ ID NO: 436
gctgcctatcttatgttga
1788
1807
SEQ ID NO: 1439
tcaatatcaaaagcccagc
12037
12056
1
4


 


SEQ ID NO: 437
actttgtggcttcccatat
1882
1901
SEQ ID NO: 1440
atatctggaaccttgaagt
10729
10748
1
4


 


SEQ ID NO: 438
gccaatatcttgaactcag
1902
1921
SEQ ID NO: 1441
ctgaactcagaaggatggc
13992
14011
1
4


 


SEQ ID NO: 439
aatatcttgaactcagaag
1905
1924
SEQ ID NO: 1442
cttccattctgaatatatt
13370
13389
1
4


 


SEQ ID NO: 440
ctcagaagaattggatatc
1916
1935
SEQ ID NO: 1443
gataaaagattactttgag
7265
7284
1
4


 


SEQ ID NO: 441
aagaattggatatccaaga
1921
1940
SEQ ID NO: 1444
tcttcaatttattcttctt
13817
13836
1
4


 


SEQ ID NO: 442
agaattggatatccaagat
1922
1941
SEQ ID NO: 1445
atcttcaatttattcttct
13816
13835
1
4


 


SEQ ID NO: 443
tggatatccaagatctgaa
1927
1946
SEQ ID NO: 1446
ttcacataccagaattcca
8317
8336
1
4


 


SEQ ID NO: 444
atatccaagatctgaaaaa
1930
1949
SEQ ID NO: 1447
tttttaaccagtcagatat
10177
10196
1
4


 


SEQ ID NO: 445
tatccaagatctgaaaaag
1931
1950
SEQ ID NO: 1448
ctttttaaccagtcagata
10176
10195
1
4


 


SEQ ID NO: 446
caagatctgaaaaagttag
1935
1954
SEQ ID NO: 1449
ctaaattcccatggtcttg
4965
4984
1
4


 


SEQ ID NO: 447
aagatctgaaaaagttagt
1936
1955
SEQ ID NO: 1450
actaaattcccatggtctt
4964
4983
1
4


 


SEQ ID NO: 448
tgaaaaagttagtgaaaga
1942
1961
SEQ ID NO: 1451
tctttctcgggaatattca
10622
10641
1
4


 


SEQ ID NO: 449
tccaactgtcatggacttc
1982
2001
SEQ ID NO: 1452
gaagcacatatgaactgga
13937
13956
1
4


 


SEQ ID NO: 450
tcagaaaattctctcggaa
1999
2018
SEQ ID NO: 1453
ttcctttaacaattcctga
9493
9512
1
4


 


SEQ ID NO: 451
ttccatcacttgacccagc
2044
2063
SEQ ID NO: 1454
gctgacatagggaatggaa
8433
8452
1
4


 


SEQ ID NO: 452
cccagcctcagccaaaata
2057
2076
SEQ ID NO: 1455
tattctatccaagattggg
7812
7831
1
4


 


SEQ ID NO: 453
agcctcagccaaaatagaa
2060
2079
SEQ ID NO: 1456
ttctatccaagattgggct
7814
7833
1
4


 


SEQ ID NO: 454
atcttatatttgatccaaa
2083
2102
SEQ ID NO: 1457
tttgaaaaacaaagcagat
11813
11832
1
4


 


SEQ ID NO: 455
tcttatatttgatccaaat
2084
2103
SEQ ID NO: 1458
attttttgcaagttaaaga
14011
14030
1
4


 


SEQ ID NO: 456
cttcctaaagaaagcatgc
2109
2128
SEQ ID NO: 1459
gcatggcattatgatgaag
3606
3625
1
4


 


SEQ ID NO: 457
ctaaagaaagcatgctgaa
2113
2132
SEQ ID NO: 1460
ttcagggtgtggagtttag
5686
5705
1
4


 


SEQ ID NO: 458
taaagaaagcatgctgaaa
2114
2133
SEQ ID NO: 1461
tttcttaaacattccttta
9482
9501
1
4


 


SEQ ID NO: 459
gagattggcttggaaggaa
2175
2194
SEQ ID NO: 1462
ttccctccattaagttctc
11701
11720
1
4


 


SEQ ID NO: 460
ctttgagccaacattggaa
2198
2217
SEQ ID NO: 1463
ttccaatgaccaagaaaag
11060
11079
1
4


 


SEQ ID NO: 461
cagacagtgtcaacaaagc
2245
2264
SEQ ID NO: 1464
gcttactggacgaactctg
6134
6153
1
4


 


SEQ ID NO: 462
cagtgtcaacaaagctttg
2249
2268
SEQ ID NO: 1465
caaattcctggatacactg
9849
9868
1
4


 


SEQ ID NO: 463
agtgtcaacaaagctttgt
2250
2269
SEQ ID NO: 1466
acaagaatacgtctacact
4351
4370
1
4


 


SEQ ID NO: 464
ctgatggtgtctctaaggt
2290
2309
SEQ ID NO: 1467
acctcggaacaatcctcag
3325
3344
1
4


 


SEQ ID NO: 465
tgatggtgtctctaaggtc
2291
2310
SEQ ID NO: 1468
gacctgcgcaacgagatca
8823
8842
1
4


 


SEQ ID NO: 466
aaacatgagcaggatatgg
2343
2362
SEQ ID NO: 1469
ccatgatctacatttgttt
6788
6807
1
4


 


SEQ ID NO: 467
gaagctgattaaagatttg
2387
2406
SEQ ID NO: 1470
caaaaacattttcaacttc
5279
5298
1
4


 


SEQ ID NO: 468
aaagatttgaaatccaaag
2397
2416
SEQ ID NO: 1471
ctttaagttcagcatcttt
7606
7625
1
4


 


SEQ ID NO: 469
gatgggtgcccgcactctg
2510
2529
SEQ ID NO: 1472
cagatttgaggattccatc
7975
7994
1
4


 


SEQ ID NO: 470
gggatcccccagatgattg
2532
2551
SEQ ID NO: 1473
caatcacaagtcgattccc
9075
9094
1
4


 


SEQ ID NO: 471
ttttcttcactacatcttc
2585
2604
SEQ ID NO: 1474
gaagtgtcagtggcaaaaa
10374
10393
1
4


 


SEQ ID NO: 472
tcttcactacatcttcatg
2588
2607
SEQ ID NO: 1475
catggcattatgatgaaga
3607
3626
1
4


 


SEQ ID NO: 473
tacatcttcatggagaatg
2595
2614
SEQ ID NO: 1476
cattatggaggcccatgta
9437
9456
1
4


 


SEQ ID NO: 474
ttcatggagaatgcctttg
2601
2620
SEQ ID NO: 1477
caaaatcaactttaatgaa
6599
6618
1
4


 


SEQ ID NO: 475
tcatggagaatgcctttga
2602
2621
SEQ ID NO: 1478
tcaacacaatcttcaatga
13108
13127
1
4


 


SEQ ID NO: 476
tttgaactccccactggag
2616
2635
SEQ ID NO: 1479
ctccccaggacctttcaaa
9834
9653
1
4


 


SEQ ID NO: 477
ttgaactccccactggagc
2617
2636
SEQ ID NO: 1480
gctccccaggacctttcaa
9833
9852
1
4


 


SEQ ID NO: 478
tgaactccccactggagct
2618
2637
SEQ ID NO: 1481
agctccccaggacctttca
9832
9851
1
4


 


SEQ ID NO: 479
cactggagctggattacag
2627
2646
SEQ ID NO: 1482
ctgtttctgagtcccagtg
9336
9355
1
4


 


SEQ ID NO: 480
actggagctggattacagt
2628
2647
SEQ ID NO: 1483
actgtttctgagtcccagt
9335
9354
1
4


 


SEQ ID NO: 481
agttgcaaatatcttcatc
2644
2663
SEQ ID NO: 1484
gatgatgccaaaatcaact
6591
6610
1
4


 


SEQ ID NO: 482
gttgcaaatatcttcatct
2645
2664
SEQ ID NO: 1485
agatgatgccaaaatcaac
6590
6609
1
4


 


SEQ ID NO: 483
aaatatcttcatctggagt
2650
2669
SEQ ID NO: 1486
actcagaaggatggcattt
13996
14015
1
4


 


SEQ ID NO: 484
taaaactggaagtagccaa
2695
2714
SEQ ID NO: 1487
ttggttacaggaggcttta
7592
7611
1
4


 


SEQ ID NO: 485
ggctgaactggtggcaaaa
2720
2739
SEQ ID NO: 1488
ttttcttttcagcccagcc
9220
9239
1
4


 


SEQ ID NO: 486
tgtggagtttgtgacaaat
2750
2769
SEQ ID NO: 1489
attttcaagcaaatgcaca
8530
8549
1
4


 


SEQ ID NO: 487
ttgtgacaaatatgggcat
2758
2777
SEQ ID NO: 1490
atgcgtctaccttacacaa
9513
9532
1
4


 


SEQ ID NO: 488
atgaacaccaacttcttcc
2811
2830
SEQ ID NO: 1491
ggaagctgaagtttatcat
2869
2888
1
4


 


SEQ ID NO: 489
cttccacgagtcgggtctg
2825
2844
SEQ ID NO: 1492
cagagctatcactgggaag
5227
5246
1
4


 


SEQ ID NO: 490
gagtcgggtctggaggctc
2832
2851
SEQ ID NO: 1493
gagcttactggacgaactc
6132
6151
1
4


 


SEQ ID NO: 491
cctaaaagctgggaagctg
2858
2877
SEQ ID NO: 1494
cagcctccccagccgtagg
12112
12131
1
4


 


SEQ ID NO: 492
agctgggaagctgaagttt
2864
2883
SEQ ID NO: 1495
aaactgttaatttacagct
5455
5474
1
4


 


SEQ ID NO: 493
ccagattagagctggaact
3106
3125
SEQ ID NO: 1496
agtttccggggaaacctgg
12718
12737
1
4


 


SEQ ID NO: 494
ggataccctgaagtttgta
3200
3219
SEQ ID NO: 1497
tacagtattctgaaaatcc
8385
8404
1
4


 


SEQ ID NO: 495
ctgaggctaccatgacatt
3244
3263
SEQ ID NO: 1498
aatgagctcatggcttcag
3809
3828
1
4


 


SEQ ID NO: 496
tgtccagtgaagtccaaat
3289
3308
SEQ ID NO: 1499
attttgagaggaatcgaca
6349
6368
1
4


 


SEQ ID NO: 497
aattccggattttgatgtt
3305
3324
SEQ ID NO: 1500
aacacatgaatcacaaatt
8930
8949
1
4


 


SEQ ID NO: 498
ttccggattttgatgttga
3307
3326
SEQ ID NO: 1501
tcaaaacgagcttcaggaa
13199
13218
1
4


 


SEQ ID NO: 499
cggaacaatcctcagagtt
3329
3348
SEQ ID NO: 1502
aacttgtacaactggtccg
4203
4222
1
4


 


SEQ ID NO: 500
tcctcagagttaatgatga
3337
3356
SEQ ID NO: 1503
tcatcaattggttacagga
7585
7604
1
4


 


SEQ ID NO: 501
ctcaccctggacattcaga
3384
3403
SEQ ID NO: 1504
tctgcagaacaatgctgag
12431
12450
1
4


 


SEQ ID NO: 502
cattcagaacaagaaaatt
3395
3414
SEQ ID NO: 1505
aattgactttgtagaaatg
8096
8115
1
4


 


SEQ ID NO: 503
actgaggtcgccctcatgg
3414
3433
SEQ ID NO: 1506
ccatgcaagtcagcccagt
10916
10935
1
4


 


SEQ ID NO: 504
ttatttccataccccgttt
3478
3497
SEQ ID NO: 1507
aaactgcctatattgataa
13872
13891
1
4


 


SEQ ID NO: 505
gtttgcaagcagaagccag
3493
3512
SEQ ID NO: 1508
ctggacttctcttcaaaac
5400
5419
1
4


 


SEQ ID NO: 506
tttgcaagcagaagccaga
3494
3513
SEQ ID NO: 1509
tctgggtgtcgacagcaaa
5264
5283
1
4


 


SEQ ID NO: 507
ttgcaagcagaagccagaa
3495
3514
SEQ ID NO: 1510
ttctgggtgtcgacagcaa
5263
5282
1
4


 


SEQ ID NO: 508
ctgcttctccaaatggact
3546
3565
SEQ ID NO: 1511
agtcaagattgatgggcag
4559
4578
1
4


 


SEQ ID NO: 509
tgctacagcttatggctcc
3569
3588
SEQ ID NO: 1512
ggaggctttaagttcagca
7601
7620
1
4


 


SEQ ID NO: 510
acagcttatggctccacag
3573
3592
SEQ ID NO: 1513
ctgtatagcaaattcctgt
5889
5908
1
4


 


SEQ ID NO: 511
tttccaagagggtggcatg
3592
3611
SEQ ID NO: 1514
catggacttcttctggaaa
8869
8888
1
4


 


SEQ ID NO: 512
ccaagagggtggcatggca
3595
3614
SEQ ID NO: 1515
tgcccagcaagcaagttgg
9353
9372
1
4


 


SEQ ID NO: 513
gtggcatggcattatgatg
3603
3622
SEQ ID NO: 1516
catccttaacaccttccac
8063
8082
1
4


 


SEQ ID NO: 514
tgatgaagagaagattgaa
3617
3636
SEQ ID NO: 1517
ttcactgttcctgaaatca
7863
7882
1
4


 


SEQ ID NO: 515
gaagagaagattgaatttg
3621
3640
SEQ ID NO: 1518
caaaaacattttcaacttc
5279
5298
1
4


 


SEQ ID NO: 516
gagaagattgaatttgaat
3624
3643
SEQ ID NO: 1519
attcataatcccaactctc
8270
8289
1
4


 


SEQ ID NO: 517
tttgaatggaacacaggca
3636
3655
SEQ ID NO: 1520
tgcctttgtgtacaccaaa
11228
11247
1
4


 


SEQ ID NO: 518
aggcaccaatgtagatacc
3650
3669
SEQ ID NO: 1521
ggtaacctaaaaggagcct
5583
5602
1
4


 


SEQ ID NO: 519
caaaaaaatgacttccaat
3668
3687
SEQ ID NO: 1522
attgaagtacctacttttg
8358
8377
1
4


 


SEQ ID NO: 520
aaaaaaatgacttccaatt
3669
3688
SEQ ID NO: 1523
aattgaagtacctactttt
8357
8376
1
4


 


SEQ ID NO: 521
aaaaaatgacttccaattt
3670
3689
SEQ ID NO: 1524
aaatccaatctcctctttt
8398
8417
1
4


 


SEQ ID NO: 522
cagagtccctcaaacagac
3752
3771
SEQ ID NO: 1525
gtctgtgggattccatctg
4082
4101
1
4


 


SEQ ID NO: 523
aaattaatagttgcaatga
3795
3814
SEQ ID NO: 1526
tcataagttcaatgaattt
13178
13197
1
4


 


SEQ ID NO: 524
ttcaacctccagaacatgg
3891
3910
SEQ ID NO: 1527
ccattgaccagatgctgaa
8134
8153
1
4


 


SEQ ID NO: 525
tgggattgccagacttcca
3907
3926
SEQ ID NO: 1528
tggaaatgggcctgcccca
8895
8914
1
4


 


SEQ ID NO: 526
cagtttgaaaattgagatt
3986
4005
SEQ ID NO: 1529
aatcacaactcctccactg
9533
9552
1
4


 


SEQ ID NO: 527
gaaaattgagattcctttg
3992
4011
SEQ ID NO: 1530
caaaactaccacacatttc
13686
13705
1
4


 


SEQ ID NO: 528
tttgccttttggtggcaaa
4007
4026
SEQ ID NO: 1531
tttgagaggaatcgacaaa
6351
6370
1
4


 


SEQ ID NO: 529
ctccagagatctaaagatg
4028
4047
SEQ ID NO: 1532
catcaattggttacaggag
7586
7605
1
4


 


SEQ ID NO: 530
tctaaagatgttagagact
4037
4056
SEQ ID NO: 1533
agtccttcatgtccctaga
10025
10044
1
4


 


SEQ ID NO: 531
ctgtgggattccatctgcc
4084
4103
SEQ ID NO: 1534
ggcattttgaaaaaaacag
9727
9746
1
4


 


SEQ ID NO: 532
atctgccatctcgagagtt
4096
4115
SEQ ID NO: 1535
aactctcaaaccctaagat
8548
8567
1
4


 


SEQ ID NO: 533
tctcgagagttccaagtcc
4104
4123
SEQ ID NO: 1536
ggacattcctctagcgaga
8207
8226
1
4


 


SEQ ID NO: 534
agtccctacttttaccatt
4118
4137
SEQ ID NO: 1537
aatgaatacagccaggact
6078
6097
1
4


 


SEQ ID NO: 535
acttttaccattcccaagt
4125
4144
SEQ ID NO: 1538
actttgtagaaatgaaagt
8101
8120
1
4


 


SEQ ID NO: 536
cattcccaagttgtatcaa
4133
4152
SEQ ID NO: 1539
ttgaaggacttcaggaatg
12001
12020
1
4


 


SEQ ID NO: 537
accacatgaaggctgactc
4276
4295
SEQ ID NO: 1540
gagtaaaccaaaacttggt
9016
9035
1
4


 


SEQ ID NO: 538
tttcctacaatgtgcaagg
4309
4328
SEQ ID NO: 1541
cctttaacaattcctgaaa
9495
9514
1
4


 


SEQ ID NO: 539
ctggagaaacaacatatga
4330
4349
SEQ ID NO: 1542
tcattctgggtctttccag
11027
11046
1
4


 


SEQ ID NO: 540
atcatgtgatgggtctcta
4370
4369
SEQ ID NO: 1543
tagaattacagaaaatgat
6557
6576
1
4


 


SEQ ID NO: 541
catgtgatgggtctctacg
4372
4391
SEQ ID NO: 1544
cgtaggcaccgtgggcatg
12125
12144
1
4


 


SEQ ID NO: 542
ttctagattcgaatatcaa
4399
4418
SEQ ID NO: 1545
ttgatgatgctgtcaagaa
7300
7319
1
4


 


SEQ ID NO: 543
tggggaccacagatgtctg
4491
4510
SEQ ID NO: 1546
cagaattccagcttcccca
8326
8345
1
4


 


SEQ ID NO: 544
ctaacactggccggctcaa
4636
4655
SEQ ID NO: 1547
ttgaggctattgatgttag
6976
6995
1
4


 


SEQ ID NO: 545
taacactggccggctcaat
4637
4656
SEQ ID NO: 1548
attgaggctattgatgtta
6975
6994
1
4


 


SEQ ID NO: 546
aacactggccggctcaatg
4638
4657
SEQ ID NO: 1549
cattgaggctattgatgtt
6974
6993
1
4


 


SEQ ID NO: 547
ctggccggctcaatggaga
4642
4661
SEQ ID NO: 1550
tctccatctgcgctaccag
12065
12084
1
4


 


SEQ ID NO: 548
agataacaggaagatatga
4705
4724
SEQ ID NO: 1551
tcatctcctttcttcatct
10202
10221
1
4


 


SEQ ID NO: 549
tccctcacctccacctctg
4737
4756
SEQ ID NO: 1552
cagatatatatctcaggga
8176
8195
1
4


 


SEQ ID NO: 550
agctgactttaaaatctga
4810
4829
SEQ ID NO: 1553
tcaggctcttcagaaagct
7922
7941
1
4


 


SEQ ID NO: 551
ctgactttaaaatctgaca
4812
4831
SEQ ID NO: 1554
tgtcaagataaacaatcag
8732
8751
1
4


 


SEQ ID NO: 552
caagatggatatgaccttc
4865
4884
SEQ ID NO: 1555
gaagtagtactgcatcttg
6835
6854
1
4


 


SEQ ID NO: 553
gctgcgttctgaatatcag
4901
4920
SEQ ID NO: 1556
ctgagtcccagtgcccagc
9342
9361
1
4


 


SEQ ID NO: 554
cgttctgaatatcaggctg
4905
4924
SEQ ID NO: 1557
cagcaagtacctgagaacg
8603
8622
1
4


 


SEQ ID NO: 555
aattcccatggtcttgagt
4968
4987
SEQ ID NO: 1558
actcagatcaaagttaatt
12264
12283
1
4


 


SEQ ID NO: 556
tggtcttgagttaaatgct
4976
4995
SEQ ID NO: 1559
agcacagtacgaaaaacca
10801
10820
1
4


 


SEQ ID NO: 557
cttgagttaaatgctgaca
4980
4999
SEQ ID NO: 1560
tgtccctagaaatctcaag
10034
10053
1
4


 


SEQ ID NO: 558
ttgagttaaatgctgacat
4981
5000
SEQ ID NO: 1561
atgtccctagaaatctcaa
10033
10052
1
4


 


SEQ ID NO: 559
tgagttaaatgctgacatc
4982
5001
SEQ ID NO: 1562
gatggaaccctctccctca
4725
4744
1
4


 


SEQ ID NO: 560
acttgaagtgtagtctcct
5086
5105
SEQ ID NO: 1563
aggaaactcagatcaaagt
12259
12278
1
4


 


SEQ ID NO: 561
agtgtagtctcctggtgct
5092
5111
SEQ ID NO: 1564
agcagccagtggcaccact
12506
12525
1
4


 


SEQ ID NO: 562
gtgctggagaatgagctga
5106
5125
SEQ ID NO: 1565
tcagccaggtttatagcac
7726
7745
1
4


 


SEQ ID NO: 563
ctggggcatctatgaaatt
5143
5162
SEQ ID NO: 1566
aatttctgattaccaccag
13571
13590
1
4


 


SEQ ID NO: 564
atggccgcttcagggaaca
5170
5189
SEQ ID NO: 1567
tgttttttggaaatgccat
8641
8660
1
4


 


SEQ ID NO: 565
ttcagtctggatgggaaag
5199
5218
SEQ ID NO: 1568
ctttgacaggcattttgaa
9719
9738
1
4


 


SEQ ID NO: 566
ccatgattctgggtgtcga
5257
5276
SEQ ID NO: 1569
tcgatgcacatacaaatgg
5830
5849
1
4


 


SEQ ID NO: 567
aaaacattttcaacttcaa
5281
5300
SEQ ID NO: 1570
ttgatgttagagtgctttt
6985
7004
1
4


 


SEQ ID NO: 568
cttaagctctcaaatgaca
5316
5335
SEQ ID NO: 1571
tgtcctacaacaagttaag
7247
7266
1
4


 


SEQ ID NO: 569
ttaagctctcaaatgacat
5317
5336
SEQ ID NO: 1572
atgtcctacaacaagttaa
7246
7265
1
4


 


SEQ ID NO: 570
catgatgggctcatatgct
5333
5352
SEQ ID NO: 1573
agcatctttggctcacatg
7616
7635
1
4


 


SEQ ID NO: 571
tgggctcatatgctgaaat
5338
5357
SEQ ID NO: 1574
atttatcaaaagaagccca
12934
12953
1
4


 


SEQ ID NO: 572
actggacttctcttcaaaa
5399
5418
SEQ ID NO: 1575
ttttggcaagctatacagt
8372
8391
1
4


 


SEQ ID NO: 573
acttctcttcaaaacttga
5404
5423
SEQ ID NO: 1576
tcaattgggagagacaagt
6496
6515
1
4


 


SEQ ID NO: 574
ctgacaagttttataagca
5437
5456
SEQ ID NO: 1577
tgctttgtgagtttatcag
9685
9704
1
4


 


SEQ ID NO: 575
aagttttataagcaaactg
5442
5461
SEQ ID NO: 1578
cagtcatgtagaaaaactt
4421
4440
1
4


 


SEQ ID NO: 576
ctgttaatttacagctaca
5458
5477
SEQ ID NO: 1579
tgtactggaaaacgtacag
6380
6399
1
4


 


SEQ ID NO: 577
ttacagctacagccctatt
5466
5485
SEQ ID NO: 1580
aatattgatcaatttgtaa
6417
6436
1
4


 


SEQ ID NO: 578
tctggtaactactttaaac
5486
5505
SEQ ID NO: 1581
gtttgaaaaacaaagcaga
11812
11831
1
4


 


SEQ ID NO: 579
tttaaacagtgacctgaaa
5498
5517
SEQ ID NO: 1582
tttcatttgaaagaataaa
7024
7043
1
4


 


SEQ ID NO: 580
ttaaacagtgacctgaaat
5499
5518
SEQ ID NO: 1583
atttcaagcaagaacttaa
10426
10445
1
4


 


SEQ ID NO: 581
cagtgacctgaaatacaat
5504
5523
SEQ ID NO: 1584
attggcgtggagcttactg
6123
6142
1
4


 


SEQ ID NO: 582
tgtggctggtaacctaaaa
5576
5595
SEQ ID NO: 1585
ttttgctggagaagccaca
10757
10776
1
4


 


SEQ ID NO: 583
ttatcagcaagctataaag
5649
5668
SEQ ID NO: 1586
ctttgcactatgttcataa
12756
12775
1
4


 


SEQ ID NO: 584
ggttcagggtgtggagttt
5684
5703
SEQ ID NO: 1587
aaacacctaagagtaaacc
9006
9025
1
4


 


SEQ ID NO: 585
attcagactcactgcattt
5767
5786
SEQ ID NO: 1588
aaatgctgacatagggaat
8429
8448
1
4


 


SEQ ID NO: 586
ttcagactcactgcatttc
5768
5787
SEQ ID NO: 1589
gaaatattatgaacttgaa
13304
13323
1
4


 


SEQ ID NO: 587
tacaaatggcaatgggaaa
5840
5859
SEQ ID NO: 1590
tttcctaaagctggatgta
11168
11187
1
4


 


SEQ ID NO: 588
gctgtatagcaaattcctg
5888
5907
SEQ ID NO: 1591
caggtccatgcaagtcagc
10911
10930
1
4


 


SEQ ID NO: 589
tgagcagacaggcacctgg
6035
6054
SEQ ID NO: 1592
ccagcttccccacatctca
8333
8352
1
4


 


SEQ ID NO: 590
ggcacctggaaactcaaga
6045
6064
SEQ ID NO: 1593
tcttcgtgtttcaactgcc
11213
11232
1
4


 


SEQ ID NO: 591
tgaatacagccaggacttg
6080
6099
SEQ ID NO: 1594
caagtaagtgctaggttca
9372
9391
1
4


 


SEQ ID NO: 592
gaatacagccaggacttgg
6081
6100
SEQ ID NO: 1595
ccaacacttacttgaattc
10660
10679
1
4


 


SEQ ID NO: 593
ctggacgaactctggctga
6139
6158
SEQ ID NO: 1596
tcagaaagctaccttccag
7931
7950
1
4


 


SEQ ID NO: 594
ttttactcagtgagcccat
6193
6212
SEQ ID NO: 1597
atggacttcttctggaaaa
8870
8889
1
4


 


SEQ ID NO: 595
gatgagagatgccgttgag
6233
6252
SEQ ID NO: 1598
ctcatctcctttcttcatc
10201
10220
1
4


 


SEQ ID NO: 596
aattgttgcttttgtaaag
6269
6288
SEQ ID NO: 1599
cttttctaaacttgaaatt
9056
9075
1
4


 


SEQ ID NO: 597
cttttgtaaagtatgataa
6277
6296
SEQ ID NO: 1600
ttatgaacttgaagaaaag
13310
13329
1
4


 


SEQ ID NO: 598
tttgtaaagtatgataaaa
6279
6298
SEQ ID NO: 1601
ttttcacattagatgcaaa
8413
8432
1
4


 


SEQ ID NO: 599
tccattaacctcccatttt
6312
6331
SEQ ID NO: 1602
aaaattgatgatatctgga
10719
10738
1
4


 


SEQ ID NO: 600
ccattaacctcccattttt
6313
6332
SEQ ID NO: 1603
aaaagggtcatggaaatgg
8885
8904
1
4


 


SEQ ID NO: 601
cttgcaagaatattttgag
6338
6357
SEQ ID NO: 1604
ctcaattttgattttcaag
8520
8539
1
4


 


SEQ ID NO: 602
agaatattttgagaggaat
6344
6363
SEQ ID NO: 1605
attccctccattaagttct
11700
11719
1
4


 


SEQ ID NO: 603
attatagttgtactggaaa
6372
6391
SEQ ID NO: 1606
tttcaagcaagaacttaat
10427
10446
1
4


 


SEQ ID NO: 604
gaagcacatcaatattgat
6407
6426
SEQ ID NO: 1607
atcagttcagataaacttc
7991
8010
1
4


 


SEQ ID NO: 605
acatcaatattgatcaatt
6412
6431
SEQ ID NO: 1608
aattccctgaagttgatgt
11479
11498
1
4


 


SEQ ID NO: 606
gaaaactcccacagcaagc
6457
6476
SEQ ID NO: 1609
gctttctcttccacatttc
10052
10071
1
4


 


SEQ ID NO: 607
ctgaattcattcaattggg
6486
6505
SEQ ID NO: 1610
cccatttacagatcttcag
11363
11382
1
4


 


SEQ ID NO: 608
tgaattcattcaattggga
6487
6506
SEQ ID NO: 1611
tcccatttacagatcttca
11362
11381
1
4


 


SEQ ID NO: 609
aactgactgctctcacaaa
6532
6551
SEQ ID NO: 1612
tttgaggattccatcagtt
7979
7998
1
4


 


SEQ ID NO: 610
aaaagtatagaattacaga
6550
6569
SEQ ID NO: 1613
tctggctccctcaactttt
9042
9061
1
4


 


SEQ ID NO: 611
atcaactttaatgaaaaac
6603
6622
SEQ ID NO: 1614
gtttattgaaaatattgat
6803
6822
1
4


 


SEQ ID NO: 612
tgatttgaaaatagctatt
6686
6705
SEQ ID NO: 1615
aatattattgatgaaatca
6708
6727
1
4


 


SEQ ID NO: 613
atttgaaaatagctattgc
6688
6707
SEQ ID NO: 1616
gcaagaacttaatggaaat
10433
10452
1
4


 


SEQ ID NO: 614
attgctaatattattgatg
6702
6721
SEQ ID NO: 1617
catcacactgaataccaat
10151
10170
1
4


 


SEQ ID NO: 615
gaaaaattaaaaagtcttg
6729
6748
SEQ ID NO: 1618
caagagcttatgggatttc
11153
11172
1
4


 


SEQ ID NO: 616
actatcatatccgtgtaat
6754
6773
SEQ ID NO: 1619
attactttgagaaattagt
7273
7292
1
4


 


SEQ ID NO: 617
tattgattttaacaaaagt
6815
6834
SEQ ID NO: 1620
acttgacttcagagaaata
11396
11415
1
4


 


SEQ ID NO: 618
ctgcagcagcttaagagac
6906
6925
SEQ ID NO: 1621
gtcttcagtgaagctgcag
10691
10710
1
4


 


SEQ ID NO: 619
aaaacaacacattgaggct
6965
6984
SEQ ID NO: 1622
agcctcacctcttactttt
10563
10582
1
4


 


SEQ ID NO: 620
ttgagcatgtcaaacactt
7051
7070
SEQ ID NO: 1623
aagtagctgagaaaatcaa
7096
7115
1
4


 


SEQ ID NO: 621
tttgaagtagctgagaaaa
7092
7111
SEQ ID NO: 1624
ttttcacattagatgcaaa
8413
8432
1
4


 


SEQ ID NO: 622
ttagtagagttggcccacc
7191
7210
SEQ ID NO: 1625
ggtggactcttgctgctaa
7768
7787
1
4


 


SEQ ID NO: 623
tgaaggagactattcagaa
7219
7238
SEQ ID NO: 1626
ttctcaattttgattttca
8518
8537
1
4


 


SEQ ID NO: 624
gagactattcagaagctaa
7224
7243
SEQ ID NO: 1627
ttagccacagctctgtctc
10293
10312
1
4


 


SEQ ID NO: 625
aattagttggatttattga
7285
7304
SEQ ID NO: 1628
tcaagaagcttaatgaatt
7312
7331
1
4


 


SEQ ID NO: 626
gcttaatgaattatctttt
7319
7338
SEQ ID NO: 1629
aaaacgagcttcaggaagc
13201
13220
1
4


 


SEQ ID NO: 627
ttaacaaattccttgacat
7357
7376
SEQ ID NO: 1630
atgtcctacaacaagttaa
7246
7265
1
4


 


SEQ ID NO: 628
aaattaaagtcatttgatt
7386
7405
SEQ ID NO: 1631
aatcctttgacaggcattt
9715
9734
1
4


 


SEQ ID NO: 629
gactcaatggtgaaattca
7456
7475
SEQ ID NO: 1632
tgaaattcaatcacaagtc
9068
9087
1
4


 


SEQ ID NO: 630
gaaattcaggctctggaac
7467
7486
SEQ ID NO: 1633
gttctcaattttgattttc
8517
8536
1
4


 


SEQ ID NO: 631
actaccacaaaaagctgaa
7484
7503
SEQ ID NO: 1634
ttcaggaactattgctagt
10637
10656
1
4


 


SEQ ID NO: 632
ccaaaataaccttaatcat
7570
7589
SEQ ID NO: 1635
atgatttccctgaccttgg
10942
10961
1
4


 


SEQ ID NO: 633
aaataaccttaatcatcaa
7573
7592
SEQ ID NO: 1636
ttgaagtaaaagaaaattt
10741
10760
1
4


 


SEQ ID NO: 634
tttaagttcagcatctttg
7607
7626
SEQ ID NO: 1637
caaatctggatttcttaaa
9472
9491
1
4


 


SEQ ID NO: 635
caggtttatagcacacttg
7731
7750
SEQ ID NO: 1638
caagggttcactgttcctg
7857
7876
1
4


 


SEQ ID NO: 636
gttcactgttcctgaaatc
7862
7881
SEQ ID NO: 1639
gattctcagatgagggaac
8914
8933
1
4


 


SEQ ID NO: 637
cactgttcctgaaatcaag
7865
7884
SEQ ID NO: 1640
cttgaacacaaagtcagtg
6000
6019
1
4


 


SEQ ID NO: 638
actgttcctgaaatcaaga
7866
7885
SEQ ID NO: 1641
tcttgaacacaaagtcagt
5999
6018
1
4


 


SEQ ID NO: 639
gcctgcctttgaagtcagt
7901
7920
SEQ ID NO: 1642
actgttgactcaggaaggc
12572
12591
1
4


 


SEQ ID NO: 640
taacagatttgaggattcc
7972
7991
SEQ ID NO: 1643
ggaagcttctcaagagtta
13214
13233
1
4


 


SEQ ID NO: 641
gttttccacaccagaattt
8042
8061
SEQ ID NO: 1644
aaatttctctgctggaaac
9410
9429
1
4


 


SEQ ID NO: 642
tcagaaccattgaccagat
8128
8147
SEQ ID NO: 1645
atctgcagaacaatgctga
12430
12449
1
4


 


SEQ ID NO: 643
tagcgagaatcaccctgcc
8218
8237
SEQ ID NO: 1646
ggcagcttctggcttgcta
12293
12312
1
4


 


SEQ ID NO: 644
ccttaatgattttcaagtt
8291
8310
SEQ ID NO: 1647
aactgttgactcaggaagg
12571
12590
1
4


 


SEQ ID NO: 645
acataccagaattccagct
8320
8339
SEQ ID NO: 1648
agctgccagtccttcatgt
10018
10037
1
4


 


SEQ ID NO: 646
aatgctgacatagggaatg
8430
8449
SEQ ID NO: 1649
cattaatcctgccatcatt
9997
10016
1
4


 


SEQ ID NO: 647
atgctgacatagggaatgg
8431
8450
SEQ ID NO: 1650
ccatttgagatcacggcat
9237
9256
1
4


 


SEQ ID NO: 648
aaccacctcagcaaacgaa
8450
8469
SEQ ID NO: 1651
ttcgttttccattaaggtt
9283
9302
1
4


 


SEQ ID NO: 649
agcaggtatcgcagcttcc
8468
8487
SEQ ID NO: 1652
ggaagtggccctgaatgct
10964
10983
1
4


 


SEQ ID NO: 650
tgcacaactctcaaaccct
8543
8562
SEQ ID NO: 1653
agggaaagagaagattgca
13493
13512
1
4


 


SEQ ID NO: 651
aggagtcagtgaagttctc
8584
8603
SEQ ID NO: 1654
gagaacttactatcatcct
13780
13799
1
4


 


SEQ ID NO: 652
tttttggaaatgccattga
8644
8663
SEQ ID NO: 1655
tcaatgaatttattcaaaa
13186
13205
1
4


 


SEQ ID NO: 653
aatggagtgattgtcaaga
8721
8740
SEQ ID NO: 1656
tcttttcagcccagccatt
9223
9242
1
4


 


SEQ ID NO: 654
gtcaagataaacaatcagc
8733
8752
SEQ ID NO: 1657
gctgactttaaaatctgac
4811
4830
1
4


 


SEQ ID NO: 655
tccacaaattgaacatccc
8779
8798
SEQ ID NO: 1658
gggatttcctaaagctgga
11164
11183
1
4


 


SEQ ID NO: 656
ttgaacatccccaaactgg
8787
8806
SEQ ID NO: 1659
ccagtttccagggactcaa
12595
12614
1
4


 


SEQ ID NO: 657
acatccccaaactggactt
8791
8810
SEQ ID NO: 1660
aagtcgattcccagcatgt
9082
9101
1
4


 


SEQ ID NO: 658
acttctctagtcaggctga
8806
8825
SEQ ID NO: 1661
tcagatggaaaaatgaagt
11002
11021
1
4


 


SEQ ID NO: 659
tgaatcacaaattagtttc
8936
8955
SEQ ID NO: 1662
gaaagtccataatggttca
12809
12828
1
4


 


SEQ ID NO: 660
agaaggacccctcacttcc
8960
8979
SEQ ID NO: 1663
ggaagaagaggcagcttct
12284
12303
1
4


 


SEQ ID NO: 661
ttggactgtccaataagat
8980
8999
SEQ ID NO: 1664
atctaaatgcagtagccaa
11626
11645
1
4


 


SEQ ID NO: 662
actgtccaataagatcaat
8984
9003
SEQ ID NO: 1665
attgataaaaccatacagt
13883
13902
1
4


 


SEQ ID NO: 663
ctgtccaataagatcaata
8985
9004
SEQ ID NO: 1666
tattgataaaaccatacag
13882
13901
1
4


 


SEQ ID NO: 664
gtttatgaatctggctccc
9033
9052
SEQ ID NO: 1667
gggaatctgatgaggaaac
12247
12266
1
4


 


SEQ ID NO: 665
atgaatctggctccctcaa
9037
9056
SEQ ID NO: 1668
ttgagttgcccaccatcat
11659
11678
1
4


 


SEQ ID NO: 666
ctcaacttttctaaacttg
9051
9070
SEQ ID NO: 1669
caagatcgcagactttgag
11645
11664
1
4


 


SEQ ID NO: 667
ctaaaggcatggcactgtt
9121
9140
SEQ ID NO: 1670
aacagaaacaatgcattag
9741
9760
1
4


 


SEQ ID NO: 668
aaggcatggcactgtttgg
9124
9143
SEQ ID NO: 1671
ccaagaaaaggcacacctt
11069
11088
1
4


 


SEQ ID NO: 669
atccacaaacaatgaaggg
9254
9273
SEQ ID NO: 1672
ccctaacagatttgaggat
7969
7988
1
4


 


SEQ ID NO: 670
ggaatttgaaagttcgttt
9271
9290
SEQ ID NO: 1673
aaacaaacacaggcattcc
9647
9666
1
4


 


SEQ ID NO: 671
aataactatgcactgtttc
9324
9343
SEQ ID NO: 1674
gaaatactgttttcctatt
12828
12847
1
4


 


SEQ ID NO: 672
gaaacaacgagaacattat
9424
9443
SEQ ID NO: 1675
ataaactgcaagatttttc
13600
13619
1
4


 


SEQ ID NO: 673
ttcttgaaaacgacaaagc
9591
9610
SEQ ID NO: 1676
gctttccaatgaccaagaa
11057
11076
1
4


 


SEQ ID NO: 674
ataagaaaaacaaacacag
9640
9659
SEQ ID NO: 1677
ctgtgctttgtgagtttat
9682
9701
1
4


 


SEQ ID NO: 675
aaaacaaacacaggcattc
9646
9665
SEQ ID NO: 1678
gaatttgaaagttcgtttt
9272
9291
1
4


 


SEQ ID NO: 676
gcattccatcacaaatcct
9659
9678
SEQ ID NO: 1679
aggaagtggccctgaatgc
10963
10982
1
4


 


SEQ ID NO: 677
tttgaaaaaaacagaaaca
9732
9751
SEQ ID NO: 1680
tgttgaaagatttatcaaa
12925
12944
1
4


 


SEQ ID NO: 678
caatgcattagattttgtc
9749
9768
SEQ ID NO: 1681
gacaagaaaaaggggattg
10271
10290
1
4


 


SEQ ID NO: 679
caaagctgaaaaatctcag
9809
9828
SEQ ID NO: 1682
ctgagaacttcatcatttg
11430
11449
1
4


 


SEQ ID NO: 680
cctggatacactgttccag
9855
9874
SEQ ID NO: 1683
ctggacttctctagtcagg
8802
8821
1
4


 


SEQ ID NO: 681
gttgaagtgtctccattca
9882
9901
SEQ ID NO: 1684
tgaatctggctccctcaac
9038
9057
1
4


 


SEQ ID NO: 682
tttctccatcctaggttct
9956
9975
SEQ ID NO: 1685
agaatccagatacaagaaa
6885
6904
1
4


 


SEQ ID NO: 683
ttctccatcctaggttctg
9957
9976
SEQ ID NO: 1686
cagaatccagatacaagaa
6884
6903
1
4


 


SEQ ID NO: 684
tcattagagctgccagtcc
10011
10030
SEQ ID NO: 1687
ggacagtgaaatattatga
13297
13316
1
4


 


SEQ ID NO: 685
tgctgaactttttaaccag
10169
10188
SEQ ID NO: 1688
ctggatgtaaccaccagca
11178
11197
1
4


 


SEQ ID NO: 686
ctcctttcttcatcttcat
10206
10225
SEQ ID NO: 1689
atgaagcttgctccaggag
13764
13783
1
4


 


SEQ ID NO: 687
tgtcattgatgcactgcag
10226
10245
SEQ ID NO: 1690
ctgcgctaccagaaagaca
12072
12091
1
4


 


SEQ ID NO: 688
tgatgcactgcagtacaaa
10232
10251
SEQ ID NO: 1691
tttgagttgcccaccatca
11658
11677
1
4


 


SEQ ID NO: 689
agctctgtctctgagcaac
10301
10320
SEQ ID NO: 1692
gttgaccacaagcttagct
10539
10558
1
4


 


SEQ ID NO: 690
agccgaaattccaattttg
10400
10419
SEQ ID NO: 1693
caaagctggcaccagggct
13963
13982
1
4


 


SEQ ID NO: 691
ttgagaatgaatttcaagc
10416
10435
SEQ ID NO: 1694
gcttcaggaagcttctcaa
13208
13227
1
4


 


SEQ ID NO: 692
aaacctactgtctcttcct
10461
10480
SEQ ID NO: 1695
aggaaggccaagccagttt
12583
12602
1
4


 


SEQ ID NO: 693
tacttttccattgagtcat
10575
10594
SEQ ID NO: 1696
atgattatgtcaacaagta
12355
12374
1
4


 


SEQ ID NO: 694
tcaggtccatgcaagtcag
10910
10929
SEQ ID NO: 1697
ctgacatcttaggcactga
4993
5012
1
4


 


SEQ ID NO: 695
atgcaagtcagcccagttc
10918
10937
SEQ ID NO: 1698
gaactcagaaggatggcat
13994
14013
1
4


 


SEQ ID NO: 696
tgaatgctaacactaagaa
10975
10994
SEQ ID NO: 1699
ttctcaattttgattttca
8518
8537
1
4


 


SEQ ID NO: 697
agaagatcagatggaaaaa
10996
11015
SEQ ID NO: 1700
ttttctaaatggaacttct
12165
12184
1
4


 


SEQ ID NO: 698
ggctattcattctccatcc
11256
11275
SEQ ID NO: 1701
ggatctaaatgcagtagcc
11624
11643
1
4


 


SEQ ID NO: 699
aaagttttggctgataaat
11280
11299
SEQ ID NO: 1702
atttcttaaacattccttt
9481
9500
1
4


 


SEQ ID NO: 700
agttttggctgataaattc
11282
11301
SEQ ID NO: 1703
gaatctggctccctcaact
9039
9058
1
4


 


SEQ ID NO: 701
ctgggctgaaactaaatga
11308
11327
SEQ ID NO: 1704
tcattctgggtctttccag
11027
11046
1
4


 


SEQ ID NO: 702
cagagaaatacaaatctat
11405
11424
SEQ ID NO: 1705
atagcatggacttcttctg
8865
8884
1
4


 


SEQ ID NO: 703
gaggtaaaattccctgaag
11472
11491
SEQ ID NO: 1706
cttctggcttgctaacctc
12298
12317
1
4


 


SEQ ID NO: 704
cttttttgagataaccgtg
11537
11556
SEQ ID NO: 1707
cacggagttactgaaaaag
13715
13734
1
4


 


SEQ ID NO: 705
gctggaattgtcattcctt
11727
11746
SEQ ID NO: 1708
aaggcatctccacctcagc
12094
12113
1
4


 


SEQ ID NO: 706
gtgtataatgccacttgga
11787
11806
SEQ ID NO: 1709
tccaagatgagatcaacac
13096
13115
1
4


 


SEQ ID NO: 707
attccacatgcagctcaac
11851
11870
SEQ ID NO: 1710
gttgagaagccccaagaat
6246
6265
1
4


 


SEQ ID NO: 708
tgaagaagatggcaaattt
11984
12003
SEQ ID NO: 1711
aaattctcttttcttttca
9212
9231
1
4


 


SEQ ID NO: 709
atcaaaagcccagcgttca
12042
12061
SEQ ID NO: 1712
tgaaagtcaagcatctgat
12661
12680
1
4


 


SEQ ID NO: 710
gtgggcatggatatggatg
12135
12154
SEQ ID NO: 1713
catccttaacaccttccac
8063
8082
1
4


 


SEQ ID NO: 711
aaatggaacttctactaca
12171
12190
SEQ ID NO: 1714
tgtaccataagccatattt
10080
10099
1
4


 


SEQ ID NO: 712
aaaaactcaccatattcaa
12211
12230
SEQ ID NO: 1715
ttgatgttagagtgctttt
6985
7004
1
4


 


SEQ ID NO: 713
ctgagaagaaatctgcaga
12420
12439
SEQ ID NO: 1716
tctgcacagaaatattcag
13439
13458
1
4


 


SEQ ID NO: 714
acaatgctgagtgggttta
12439
12458
SEQ ID NO: 1717
taaatggagtctttattgt
14078
14097
1
4


 


SEQ ID NO: 715
caatgctgagtgggtttat
12440
12459
SEQ ID NO: 1718
ataaatggagtctttattg
14077
14096
1
4


 


SEQ ID NO: 716
ttaggcaaattgatgatat
12469
12488
SEQ ID NO: 1719
atattgtcagtgcctctaa
13384
13403
1
4


 


SEQ ID NO: 717
ataaactaatagatgtaat
12889
12908
SEQ ID NO: 1720
attactatgaaaaatttat
13633
13652
1
4


 


SEQ ID NO: 718
ccaactaatagaagataac
13031
13050
SEQ ID NO: 1721
gttattttgctaaacttgg
14044
14063
1
4


 


SEQ ID NO: 719
ttaattatatccaagatga
13087
13106
SEQ ID NO: 1722
tcatcctctaattttttaa
13792
13811
1
4


 


SEQ ID NO: 720
tttaaattgttgaaagaaa
13143
13162
SEQ ID NO: 1723
tttcatttgaaagaataaa
7024
7043
1
4


 


SEQ ID NO: 721
aagttcaatgaatttattc
13182
13201
SEQ ID NO: 1724
gaataccaatgctgaactt
10160
10179
1
4


 


SEQ ID NO: 722
ttgaagaaaagatagtcag
13318
13337
SEQ ID NO: 1725
ctgagagaagtgtcttcaa
12399
12418
1
4


 


SEQ ID NO: 723
acttccattctgaatatat
13369
13388
SEQ ID NO: 1726
atatctggaaccttgaagt
10729
10748
1
4


 


SEQ ID NO: 724
cacagaaatattcaggaat
13443
13462
SEQ ID NO: 1727
attccctgaagttgatgtg
11480
11499
1
4


 


SEQ ID NO: 725
ccattgcgacgaagaaaat
13552
13571
SEQ ID NO: 1728
atttttattcctgccatgg
10095
10114
1
4


 


SEQ ID NO: 726
tataaactgcaagattttt
13599
13618
SEQ ID NO: 1729
aaaattcaaactgcctata
13865
13884
1
4


 


SEQ ID NO: 727
tctgattactatgaaaaat
13629
13648
SEQ ID NO: 1730
atttgtaagaaaatacaga
6428
6447
1
4


 


SEQ ID NO: 728
ggagttactgaaaaagctg
13718
13737
SEQ ID NO: 1731
cagcatgcctagtttctcc
9944
9963
1
4


 


SEQ ID NO: 729
tgaagcttgctccaggaga
13765
13784
SEQ ID NO: 1732
tctcctttcttcatcttca
10205
10224
1
4


 


SEQ ID NO: 730
tgaactggacctgcaccaa
13947
13966
SEQ ID NO: 1733
ttggtagagcaagggttca
7848
7867
1
4


 


SEQ ID NO: 731
ttgctaaacttgggggagg
14050
14069
SEQ ID NO: 1734
cctcctacagtggtggcaa
4222
4241
1
4


 


SEQ ID NO: 732
gattcgaatatcaaattca
4404
4423
SEQ ID NO: 1735
tgaaaacgacaaagcaatc
9595
9614
3
3


 


SEQ ID NO: 733
atttgtttgtcaaagaagt
4543
4562
SEQ ID NO: 1736
acttttctaaacttgaaat
9055
9074
3
3


 


SEQ ID NO: 734
tctcggttgctgccgctga
25
44
SEQ ID NO: 1737
tcagcccagccatttgaga
9228
9247
2
3


 


SEQ ID NO: 735
gctgaggagcccgcccagc
39
58
SEQ ID NO: 1738
gctggatgtaaccaccagc
11177
11196
2
3


 


SEQ ID NO: 736
ctggtctgtccaaaagatg
219
238
SEQ ID NO: 1739
catcagaaccattgaccag
8126
8145
2
3


 


SEQ ID NO: 737
ctgagagttccagtggagt
283
302
SEQ ID NO: 1740
actcaatggtgaaattcag
7457
7476
2
3


 


SEQ ID NO: 738
cagtgcaccctgaaagagg
396
415
SEQ ID NO: 1741
cctcacttcctttggactg
8969
8988
2
3


 


SEQ ID NO: 739
ctctgaggagtttgctgca
464
483
SEQ ID NO: 1742
tgcaaacttgacttcagag
11391
11410
2
3


 


SEQ ID NO: 740
acatcaagaggggcatcat
574
593
SEQ ID NO: 1743
atgacgttcttgagcatgt
7042
7061
2
3


 


SEQ ID NO: 741
ctgatcagcagcagccagt
822
841
SEQ ID NO: 1744
actggacttctctagtcag
8801
8820
2
3


 


SEQ ID NO: 742
ggacgctaagaggaagcat
857
876
SEQ ID NO: 1745
atgcctacgttccatgtcc
11346
11365
2
3


 


SEQ ID NO: 743
agctgttttgaagactctc
1079
1098
SEQ ID NO: 1746
gagaagtgtcttcaaagct
12403
12422
2
3


 


SEQ ID NO: 744
tgaaaaaactaaccatctc
1105
1124
SEQ ID NO: 1747
gagatcaacacaatcttca
13104
13123
2
3


 


SEQ ID NO: 745
ctgagctgagaggcctcag
1168
1187
SEQ ID NO: 1748
ctgaattactgcacctcag
3027
3046
2
3


 


SEQ ID NO: 746
tgaaacgtgtgcatgccaa
1303
1322
SEQ ID NO: 1749
ttggtagagcaagggttca
7848
7867
2
3


 


SEQ ID NO: 747
ccttgtatgcgctgagcca
1432
1451
SEQ ID NO: 1750
tggcactgtttggagaagg
9130
9149
2
3


 


SEQ ID NO: 748
aggagctgctggacattgc
1492
1511
SEQ ID NO: 1751
gcaagtcagcccagttcct
10920
10939
2
3


 


SEQ ID NO: 749
atttgattctgcgggtcat
1567
1586
SEQ ID NO: 1752
atgaaaccaatgacaaaat
7420
7439
2
3


 


SEQ ID NO: 750
tccagaactcaagtcttca
1619
1638
SEQ ID NO: 1753
tgaaatacaatgctctgga
5512
5531
2
3


 


SEQ ID NO: 751
ggttcttcttcagactttc
1736
1755
SEQ ID NO: 1754
gaaataccaagtcaaaacc
10447
10466
2
3


 


SEQ ID NO: 752
gttgatgaggagtccttca
1802
1821
SEQ ID NO: 1755
tgaaaaagctgcaatcaac
13726
13745
2
3


 


SEQ ID NO: 753
tccaagatctgaaaaagtt
1933
1952
SEQ ID NO: 1756
aactgcttctccaaatgga
3544
3563
2
3


 


SEQ ID NO: 754
agttagtgaaagaagttct
1948
1967
SEQ ID NO: 1757
agaattcataatcccaact
8267
8286
2
3


 


SEQ ID NO: 755
gaagggaatcttatatttg
2076
2095
SEQ ID NO: 1758
caaaacctactgtctcttc
10459
10478
2
3


 


SEQ ID NO: 756
ggaagctctttttgggaag
2213
2232
SEQ ID NO: 1759
cttcacataccagaattcc
8316
8335
2
3


 


SEQ ID NO: 757
tggaataatgctcagtgtt
2366
2385
SEQ ID NO: 1760
aacaaacacaggcattcca
9648
9667
2
3


 


SEQ ID NO: 758
gatttgaaatccaaagaag
2400
2419
SEQ ID NO: 1761
cttcatgtccctagaaatc
10029
10048
2
3


 


SEQ ID NO: 759
tccaaagaagtcccggaag
2409
2428
SEQ ID NO: 1762
cttcagcctgctttctgga
4943
4962
2
3


 


SEQ ID NO: 760
aggaagggctcaaagaatg
2562
2581
SEQ ID NO: 1763
cattagagctgccagtcct
10012
10031
2
3


 


SEQ ID NO: 761
agaatgacttttttcttca
2575
2594
SEQ ID NO: 1764
tgaagatgacgacttttct
12152
12171
2
3


 


SEQ ID NO: 762
tttgtgacaaatatgggca
2757
2776
SEQ ID NO: 1765
tgccagtttgaaaaacaaa
11807
11826
2
3


 


SEQ ID NO: 763
ctgaggctaccatgacatt
3244
3263
SEQ ID NO: 1766
aatgtcagctcttgttcag
10895
10914
2
3


 


SEQ ID NO: 764
gtagataccaaaaaaatga
3660
3679
SEQ ID NO: 1767
tcatttgccctcaacctac
11442
11461
2
3


 


SEQ ID NO: 765
aaatgacttccaatttccc
3673
3692
SEQ ID NO: 1768
gggaactgttgaaagattt
12919
12938
2
3


 


SEQ ID NO: 766
atgacttccaatttccctg
3675
3694
SEQ ID NO: 1769
caggagaacttactatcat
13777
13796
2
3


 


SEQ ID NO: 767
atctgccatctcgagagtt
4096
4115
SEQ ID NO: 1770
aactcctccactgaaagat
9539
9558
2
3


 


SEQ ID NO: 768
atttgtttgtcaaagaagt
4543
4562
SEQ ID NO: 1771
acttccgtttaccagaaat
8239
8258
2
3


 


SEQ ID NO: 769
gcagagcttggcctctctg
5127
5146
SEQ ID NO: 1772
cagagctttctgccactgc
13510
13529
2
3


 


SEQ ID NO: 770
atatgctgaaatgaaattt
5345
5364
SEQ ID NO: 1773
aaattcaaactgcctatat
13866
13885
2
3


 


SEQ ID NO: 771
tcaaaacttgacaacattt
5412
5431
SEQ ID NO: 1774
aaatacttccacaaattga
8772
8791
2
3


 


SEQ ID NO: 772
cagtgacctgaaatacaat
5504
5523
SEQ ID NO: 1775
attgaacatccccaaactg
8786
8805
2
3


 


SEQ ID NO: 773
tacaaatggcaatgggaaa
5840
5859
SEQ ID NO: 1776
tttcaactgcctttgtgta
11221
11240
2
3


 


SEQ ID NO: 774
cttttgtaaagtatgataa
6277
6296
SEQ ID NO: 1777
ttattgctgaatccaaaag
13648
13667
2
3


 


SEQ ID NO: 775
ttgtaaagtatgataaaaa
6280
6299
SEQ ID NO: 1778
ttttcaagcaaatgcacaa
8531
8550
2
3


 


SEQ ID NO: 776
tccattaacctcccatttt
6312
6331
SEQ ID NO: 1779
aaaagaaaattttgctgga
10748
10767
2
3


 


SEQ ID NO: 777
gattatctgaattcattca
6480
6499
SEQ ID NO: 1780
tgaagtagaccaacaaatc
7154
7173
2
3


 


SEQ ID NO: 778
aattgggagagacaagttt
6498
6517
SEQ ID NO: 1781
aaactaaatgatctaaatt
11316
11335
2
3


 


SEQ ID NO: 779
atttgaaaatagctattgc
6688
6707
SEQ ID NO: 1782
gcaatttctgcacagaaat
13433
13452
2
3


 


SEQ ID NO: 780
tgagcatgtcaaacacttt
7052
7071
SEQ ID NO: 1783
aaagccattcagtctctca
12963
12982
2
3


 


SEQ ID NO: 781
ttgaagatgttaacaaatt
7348
7367
SEQ ID NO: 1784
aattccatatgaaagtcaa
12652
12671
2
3


 


SEQ ID NO: 782
acttgtcacctacatttct
7745
7764
SEQ ID NO: 1785
agaatattttgatccaagt
13268
13287
2
3


 


SEQ ID NO: 783
gttttccacaccagaattt
8042
8061
SEQ ID NO: 1786
aaatctggatttcttaaac
9473
9492
2
3


 


SEQ ID NO: 784
ataagtacaaccaaaattt
9397
9416
SEQ ID NO: 1787
aaataaatggagtctttat
14075
14094
2
3


 


SEQ ID NO: 785
cgggacctgcggggctgag
0
19
SEQ ID NO: 1788
ctcagttaactgtgtcccg
11563
11582
1
3


 


SEQ ID NO: 786
agtgcccttctcggttgct
17
36
SEQ ID NO: 1789
agcatctgattgactcact
12670
12689
1
3


 


SEQ ID NO: 787
gctgaggagcccgcccagc
39
58
SEQ ID NO: 1790
gctgattgaggtgtccagc
1217
1236
1
3


 


SEQ ID NO: 788
gaggagcccgcccagccag
42
61
SEQ ID NO: 1791
ctggatcacagagtccctc
3744
3763
1
3


 


SEQ ID NO: 789
gggccgcgaggccgaggcc
64
83
SEQ ID NO: 1792
ggccctgatccccgagccc
1355
1374
1
3


 


SEQ ID NO: 790
ccaggccgcagcccaggag
81
100
SEQ ID NO: 1793
ctcccggagccaaggctgg
2674
2693
1
3


 


SEQ ID NO: 791
ggagccgccccaccgcagc
96
115
SEQ ID NO: 1794
gctgttttgaagactctcc
1080
1099
1
3


 


SEQ ID NO: 792
gaagaggaaatgctggaaa
192
211
SEQ ID NO: 1795
tttcaagttcctgaccttc
8301
8320
1
3


 


SEQ ID NO: 793
caaaagatgcgacccgatt
229
248
SEQ ID NO: 1796
aatcttattggggattttg
7077
7096
1
3


 


SEQ ID NO: 794
attcaagcacctccggaag
245
264
SEQ ID NO: 1797
cttccacatttcaaggaat
10059
10078
1
3


 


SEQ ID NO: 795
gttccagtggagtccctgg
289
308
SEQ ID NO: 1798
ccagcaagtacctgagaac
8602
8621
1
3


 


SEQ ID NO: 796
gactgctgattcaagaagt
308
327
SEQ ID NO: 1799
acttgaagaaaagatagtc
13316
13335
1
3


 


SEQ ID NO: 797
gtgccaccaggatcaactg
325
344
SEQ ID NO: 1800
cagtgaagctgcagggcac
10696
10715
1
3


 


SEQ ID NO: 798
gatcaactgcaaggttgag
335
354
SEQ ID NO: 1801
ctcacctccacctctgatc
4740
4759
1
3


 


SEQ ID NO: 799
actgcaaggttgagctgga
340
359
SEQ ID NO: 1802
tccactcacatcctccagt
1281
1300
1
3


 


SEQ ID NO: 800
ccagctctgcagcttcatc
365
384
SEQ ID NO: 1803
gatgtggtcacctacctgg
1335
1354
1
3


 


SEQ ID NO: 801
agcttcatcctgaagacca
375
394
SEQ ID NO: 1804
tggtgctggagaatgagct
5104
5123
1
3


 


SEQ ID NO: 802
cttcatcctgaagaccagc
377
396
SEQ ID NO: 1805
gctggagtaaaactggaag
2688
2707
1
3


 


SEQ ID NO: 803
ccagccagtgcaccctgaa
391
410
SEQ ID NO: 1806
ttcaagatgactgcactgg
1531
1550
1
3


 


SEQ ID NO: 804
cagtgcaccctgaaagagg
396
415
SEQ ID NO: 1807
cctcacagagctatcactg
5222
5241
1
3


 


SEQ ID NO: 805
tggcttcaaccctgagggc
419
438
SEQ ID NO: 1808
gcccactggtcgcctgcca
3525
3544
1
3


 


SEQ ID NO: 806
cttcaaccctgagggcaaa
422
441
SEQ ID NO: 1809
tttgagccaacattggaag
2199
2218
1
3


 


SEQ ID NO: 807
ttcaaccctgagggcaaag
423
442
SEQ ID NO: 1810
ctttgacaggcattttgaa
9719
9738
1
3


 


SEQ ID NO: 808
cttgctgaagaaaaccaag
443
462
SEQ ID NO: 1811
cttgaaattcaatcacaag
9066
9085
1
3


 


SEQ ID NO: 809
tgctgaagaaaaccaagaa
445
464
SEQ ID NO: 1812
ttctgctgccttatcagca
5639
5658
1
3


 


SEQ ID NO: 810
ttgctgcagccatgtccag
475
494
SEQ ID NO: 1813
ctggtcagtttgcaagcaa
2996
3015
1
3


 


SEQ ID NO: 811
tgctgcagccatgtccagg
476
495
SEQ ID NO: 1814
cctggtcagtttgcaagca
2995
3014
1
3


 


SEQ ID NO: 812
agccatgtccaggtatgag
482
501
SEQ ID NO: 1815
ctcacatcctccagtggct
1285
1304
1
3


 


SEQ ID NO: 813
agctcaagctggccattcc
499
518
SEQ ID NO: 1816
ggaactaccacaaaaagct
7481
7500
1
3


 


SEQ ID NO: 814
agaagggaagcaggttttc
518
537
SEQ ID NO: 1817
gaaatcttcaatttattct
13813
13832
1
3


 


SEQ ID NO: 815
aagggaagcaggttttcct
520
539
SEQ ID NO: 1818
aggacaccaaaataacctt
7564
7583
1
3


 


SEQ ID NO: 816
agaaagatgaacctactta
547
566
SEQ ID NO: 1619
taagaactttgccacttct
4844
4863
1
3


 


SEQ ID NO: 817
atcctgaacatcaagaggg
567
586
SEQ ID NO: 1820
ccctaacagatttgaggat
7969
7988
1
3


 


SEQ ID NO: 818
tcctgaacatcaagagggg
568
587
SEQ ID NO: 1821
cccctaacagatttgagga
7968
7987
1
3


 


SEQ ID NO: 819
ctgaacatcaagaggggca
570
589
SEQ ID NO: 1822
tgcctgcctttgaagtcag
7900
7919
1
3


 


SEQ ID NO: 820
aacatcaagaggggcatca
573
592
SEQ ID NO: 1823
tgataaaaaccaagatgtt
6290
6309
1
3


 


SEQ ID NO: 821
acatcaagaggggcatcat
574
593
SEQ ID NO: 1824
atgataaaaaccaagatgt
6289
6308
1
3


 


SEQ ID NO: 822
tcatttctgccctcctggt
589
608
SEQ ID NO: 1825
accaccagtttgtagatga
7405
7424
1
3


 


SEQ ID NO: 823
ttcccccagagacagaaga
607
626
SEQ ID NO: 1826
tcttccacatttcaaggaa
10058
10077
1
3


 


SEQ ID NO: 824
gaagaagccaagcaagtgt
621
640
SEQ ID NO: 1827
acaccttccacattccttc
8071
8090
1
3


 


SEQ ID NO: 825
ttgtttctggataccgtgt
639
658
SEQ ID NO: 1828
acactaaatacttccacaa
8767
8786
1
3


 


SEQ ID NO: 826
tgtatggaaactgctccac
655
674
SEQ ID NO: 1829
gtggaggcaacacattaca
2920
2939
1
3


 


SEQ ID NO: 827
aaactgctccactcacttt
662
681
SEQ ID NO: 1830
aaagaaacagcatttgttt
4532
4551
1
3


 


SEQ ID NO: 828
actcactttaccgtcaaga
672
691
SEQ ID NO: 1831
tcttacttttccattgagt
10572
10591
1
3


 


SEQ ID NO: 829
ctttaccgtcaagacgagg
677
696
SEQ ID NO: 1832
cctccagctcctgggaaag
2483
2502
1
3


 


SEQ ID NO: 830
ttaccgtcaagacgaggaa
679
698
SEQ ID NO: 1833
ttcctaaagctggatgtaa
11169
11185
1
3


 


SEQ ID NO: 831
acgaggaagggcaatgtgg
690
709
SEQ ID NO: 1834
ccacaagtcatcatctcgt
5956
5975
1
3


 


SEQ ID NO: 832
cgaggaagggcaatgtggc
691
710
SEQ ID NO: 1835
gccagaagtgagatcctcg
3507
3526
1
3


 


SEQ ID NO: 833
gaggaagggcaatgtggca
692
711
SEQ ID NO: 1836
tgccagtctccatgacctc
2468
2487
1
3


 


SEQ ID NO: 834
ggaagggcaatgtggcaac
694
713
SEQ ID NO: 1837
gttgctcttaaggacttcc
13356
13375
1
3


 


SEQ ID NO: 835
gaagggcaatgtggcaaca
695
714
SEQ ID NO: 1838
tgttgatgaggagtccttc
1801
1820
1
3


 


SEQ ID NO: 836
caggcatcagcccacttgc
769
788
SEQ ID NO: 1839
gcaagtctttcctggcctg
3011
3030
1
3


 


SEQ ID NO: 837
aggcatcagcccacttgct
770
789
SEQ ID NO: 1840
agcaagtctttcctggcct
3010
3029
1
3


 


SEQ ID NO: 838
tcagcccacttgctctcat
775
794
SEQ ID NO: 1841
atgaaagtcaagcatctga
12660
12679
1
3


 


SEQ ID NO: 839
gtcaactctgatcagcagc
815
834
SEQ ID NO: 1842
gctgactttaaaatctgac
4811
4830
1
3


 


SEQ ID NO: 840
ggacgctaagaggaagcat
857
876
SEQ ID NO: 1843
atgcactgtttctgagtcc
9331
9350
1
3


 


SEQ ID NO: 841
aaggagcaacacctcttcc
894
913
SEQ ID NO: 1844
ggaatatcttagcatcctt
13457
13476
1
3


 


SEQ ID NO: 842
aggagcaacacctcttcct
895
914
SEQ ID NO: 1845
aggaatatcttagcatcct
13456
13475
1
3


 


SEQ ID NO: 843
caacacctcttcctgcctt
900
919
SEQ ID NO: 1846
aaggctgactctgtggttg
4284
4303
1
3


 


SEQ ID NO: 844
aacacctcttcctgccttt
901
920
SEQ ID NO: 1847
aaagcaggccgaagctgtt
1067
1086
1
3


 


SEQ ID NO: 845
acaagaataagtatgggat
925
944
SEQ ID NO: 1848
atccatgatctacatttgt
6786
6805
1
3


 


SEQ ID NO: 846
caagaataagtatgggatg
926
945
SEQ ID NO: 1849
catcactttacaagccttg
1238
1257
1
3


 


SEQ ID NO: 847
tagcacaagtgacacagac
946
965
SEQ ID NO: 1850
gtctcttcgttctatgcta
4584
4603
1
3


 


SEQ ID NO: 848
agcacaagtgacacagact
947
966
SEQ ID NO: 1851
agtctcttcgttctatgct
4583
4602
1
3


 


SEQ ID NO: 849
gcacaagtgacacagactt
948
967
SEQ ID NO: 1852
aagtgtagtctcctggtgc
5091
5110
1
3


 


SEQ ID NO: 850
aacttgaagacacaccaaa
970
989
SEQ ID NO: 1853
tttgaggattccatcagtt
7979
7998
1
3


 


SEQ ID NO: 851
gcttctttggtgaaggtac
1000
1019
SEQ ID NO: 1854
gtacctacttttggcaagc
8364
8383
1
3


 


SEQ ID NO: 852
ctttggtgaaggtactaag
1004
1023
SEQ ID NO: 1855
cttatgggatttcctaaag
11159
11178
1
3


 


SEQ ID NO: 853
tactaagaagatgggcctc
1016
1035
SEQ ID NO: 1856
gagggtagtcataacagta
10329
10348
1
3


 


SEQ ID NO: 854
tttgagagcaccaaatcca
1038
1057
SEQ ID NO: 1857
tggaagtgtcagtggcaaa
10372
10391
1
3


 


SEQ ID NO: 855
agagcaccaaatccacatc
1042
1061
SEQ ID NO: 1858
gatggatatgaccttctct
4868
4887
1
3


 


SEQ ID NO: 856
agctgttttgaagactctc
1079
1098
SEQ ID NO: 1859
gagaacatactgggcagct
5872
5891
1
3


 


SEQ ID NO: 857
tgaaaaaactaaccatctc
1105
1124
SEQ ID NO: 1860
gagaaaatcaatgccttca
7104
7123
1
3


 


SEQ ID NO: 858
gaaaaaactaaccatctct
1106
1125
SEQ ID NO: 1861
agagccaggtcgagctttc
11044
11063
1
3


 


SEQ ID NO: 859
tctgagcaaaatatccaga
1122
1141
SEQ ID NO: 1862
tctgatgaggaaactcaga
12252
12271
1
3


 


SEQ ID NO: 860
tctcttcaataagctggtt
1148
1167
SEQ ID NO: 1863
aacctcccattttttgaga
6318
6337
1
3


 


SEQ ID NO: 861
ctgagctgagaggcctcag
1168
1187
SEQ ID NO: 1864
ctgatccccgagccctcag
1359
1378
1
3


 


SEQ ID NO: 862
tgaagcagtcacatctctc
1190
1209
SEQ ID NO: 1865
gagaaaatcaatgccttca
7104
7123
1
3


 


SEQ ID NO: 863
aagcagtcacatctctctt
1192
1211
SEQ ID NO: 1866
aagaggcagcttctggctt
12289
12308
1
3


 


SEQ ID NO: 864
ctctcttgccacagctgat
1204
1223
SEQ ID NO: 1867
atcaaaagaagcccaagag
12938
12957
1
3


 


SEQ ID NO: 865
tcttgccacagctgattga
1207
1226
SEQ ID NO: 1868
tcaaagttaattgggaaga
12271
12290
1
3


 


SEQ ID NO: 866
cttgccacagctgattgag
1208
1227
SEQ ID NO: 1869
ctcaattttgattttcaag
8520
8539
1
3


 


SEQ ID NO: 867
tgaggtgtccagccccatc
1223
1242
SEQ ID NO: 1870
gatggaaccctctccctca
4725
4744
1
3


 


SEQ ID NO: 868
tcagtgtggacagcctcag
1259
1278
SEQ ID NO: 1871
ctgacatcttaggcactga
4993
5012
1
3


 


SEQ ID NO: 869
acatcctccagtggctgaa
1288
1307
SEQ ID NO: 1872
ttcagaagctaagcaatgt
7231
7250
1
3


 


SEQ ID NO: 870
gcacagcagctgcgagaga
1377
1396
SEQ ID NO: 1873
tctctgaaagacaacgtgc
12315
12334
1
3


 


SEQ ID NO: 871
cagcagctgcgagagatct
1380
1399
SEQ ID NO: 1874
agataacattaaacagctg
13043
13062
1
3


 


SEQ ID NO: 872
gcgagggatcagcgcagcc
1407
1426
SEQ ID NO: 1875
ggctcaacacagacatcgc
5710
5729
1
3


 


SEQ ID NO: 873
aagacaaaccctacaggga
1470
1489
SEQ ID NO: 1876
tcccagaaaacctcttctt
3928
3947
1
3


 


SEQ ID NO: 874
caggagctgctggacattg
1491
1510
SEQ ID NO: 1877
caatggagagtccaacctg
4652
4671
1
3


 


SEQ ID NO: 875
aggagctgctggacattgc
1492
1511
SEQ ID NO: 1878
gcaagggttcactgttcct
7856
7875
1
3


 


SEQ ID NO: 876
ctgctggacattgctaatt
1497
1516
SEQ ID NO: 1879
aattgggaagaagaggcag
12279
12298
1
3


 


SEQ ID NO: 877
gattacacctatttgattc
1557
1576
SEQ ID NO: 1880
gaatattttgagaggaatc
6345
6364
1
3


 


SEQ ID NO: 878
atttgattctgcgggtcat
1567
1586
SEQ ID NO: 1881
atgaagtagaccaacaaat
7153
7172
1
3


 


SEQ ID NO: 879
tctgcgggtcattggaaat
1574
1593
SEQ ID NO: 1882
atttgtaagaaaatacaga
6428
6447
1
3


 


SEQ ID NO: 880
aaccatggagcagttaact
1601
1620
SEQ ID NO: 1883
agtttctccatcctaggtt
9954
9973
1
3


 


SEQ ID NO: 881
ggagcagttaactccagaa
1607
1626
SEQ ID NO: 1884
ttctgaaaatccaatctcc
8392
8411
1
3


 


SEQ ID NO: 882
actccagaactcaagtctt
1617
1636
SEQ ID NO: 1885
aagatcgcagactttgagt
11646
11665
1
3


 


SEQ ID NO: 883
tccagaactcaagtcttca
1619
1638
SEQ ID NO: 1886
tgaactcagaagaattgga
1912
1931
1
3


 


SEQ ID NO: 884
aagtacaaagccatcactg
1655
1674
SEQ ID NO: 1887
cagtcatgtagaaaaactt
4421
4440
1
3


 


SEQ ID NO: 885
gccatcactgatgatccag
1664
1683
SEQ ID NO: 1888
ctggaactctctccatggc
10875
10894
1
3


 


SEQ ID NO: 886
ccatcactgatgatccaga
1665
1684
SEQ ID NO: 1889
tctgaactcagaaggatgg
13991
14010
1
3


 


SEQ ID NO: 887
atccagaaagctgccatcc
1677
1696
SEQ ID NO: 1890
ggatttcctaaagctggat
11165
11184
1
3


 


SEQ ID NO: 888
cagaaagctgccatccagg
1680
1699
SEQ ID NO: 1891
cctgaaatacaatgctctg
5510
5529
1
3


 


SEQ ID NO: 889
acaaggaccaggaggttct
1723
1742
SEQ ID NO: 1892
agaaacagcatttgtttgt
4534
4553
1
3


 


SEQ ID NO: 890
aggaccaggaggttcttct
1726
1745
SEQ ID NO: 1893
agaagctaagcaatgtcct
7234
7253
1
3


 


SEQ ID NO: 891
accaggaggttcttcttca
1729
1748
SEQ ID NO: 1894
tgaaggctgactctgtggt
4282
4301
1
3


 


SEQ ID NO: 892
tcttcagactttccttgat
1742
1761
SEQ ID NO: 1895
atcaggaagggctcaaaga
2559
2578
1
3


 


SEQ ID NO: 893
ttcagactttccttgatga
1744
1763
SEQ ID NO: 1896
tcattactcctgggctgaa
11299
11318
1
3


 


SEQ ID NO: 894
gttgatgaggagtccttca
1802
1821
SEQ ID NO: 1897
tgaatctggctccctcaac
9038
9057
1
3


 


SEQ ID NO: 895
cttcacaggcagatattaa
1816
1835
SEQ ID NO: 1898
ttaatcgagaggtatgaag
7140
7159
1
3


 


SEQ ID NO: 896
ttcacaggcagatattaac
1817
1836
SEQ ID NO: 1899
gttaatcgagaggtatgaa
7139
7158
1
3


 


SEQ ID NO: 897
ggcagatattaacaaaatt
1823
1842
SEQ ID NO: 1900
aattgcattagatgatgcc
6581
6600
1
3


 


SEQ ID NO: 898
atattaacaaaattgtcca
1828
1847
SEQ ID NO: 1901
tggagtttgtgacaaatat
2752
2771
1
3


 


SEQ ID NO: 899
acaaaattgtccaaattct
1834
1853
SEQ ID NO: 1902
agaaacagcatttgtttgt
4534
4553
1
3


 


SEQ ID NO: 900
gagcaagtgaagaactttg
1869
1888
SEQ ID NO: 1903
caaatgacatgatgggctc
5326
5345
1
3


 


SEQ ID NO: 901
gtgaagaactttgtggctt
1875
1894
SEQ ID NO: 1904
aagcatctgattgactcac
12669
12688
1
3


 


SEQ ID NO: 902
agaactttgtggcttccca
1879
1898
SEQ ID NO: 1905
tgggcctgccccagattct
8901
8920
1
3


 


SEQ ID NO: 903
tttgtggcttcccatattg
1884
1903
SEQ ID NO: 1906
caataagatcaatagcaaa
8990
9009
1
3


 


SEQ ID NO: 904
tggcttcccatattgccaa
1888
1907
SEQ ID NO: 1907
ttggctcacatgaaggcca
7623
7642
1
3


 


SEQ ID NO: 905
ttcccatattgccaatatc
1892
1911
SEQ ID NO: 1908
gatatacactagggaggaa
12737
12756
1
3


 


SEQ ID NO: 906
tcccatattgccaatatct
1893
1912
SEQ ID NO: 1909
agatcaaagttaattggga
12268
12287
1
3


 


SEQ ID NO: 907
ttgccaatatcttgaactc
1900
1919
SEQ ID NO: 1910
gagtcccagtgcccagcaa
9344
9363
1
3


 


SEQ ID NO: 908
ttggatatccaagatctga
1926
1945
SEQ ID NO: 1911
tcagtataagtacaaccaa
9392
9411
1
3


 


SEQ ID NO: 909
tccaagatctgaaaaagtt
1933
1952
SEQ ID NO: 1912
aacttccaactgtcatgga
1978
1997
1
3


 


SEQ ID NO: 910
ctgaaaaagttagtgaaag
1941
1960
SEQ ID NO: 1913
ctttgaagtcagtcttcag
7907
7926
1
3


 


SEQ ID NO: 911
agttagtgaaagaagttct
1948
1967
SEQ ID NO: 1914
agaatctcaacttccaact
1970
1989
1
3


 


SEQ ID NO: 912
aatctcaacttccaactgt
1972
1991
SEQ ID NO: 1915
acaggggtcctttatgatt
12342
12361
1
3


 


SEQ ID NO: 913
gtcatggacttcagaaaat
1989
2008
SEQ ID NO: 1916
atttgaaagaataaatgac
7028
7047
1
3


 


SEQ ID NO: 914
tcaactctacaaatctgtt
2021
2040
SEQ ID NO: 1917
aacacattgaggctattga
6970
6989
1
3


 


SEQ ID NO: 915
aactctacaaatctgtttc
2023
2042
SEQ ID NO: 1918
gaaaaaggggattgaagtt
10276
10295
1
3


 


SEQ ID NO: 916
aaatagaagggaatcttat
2071
2090
SEQ ID NO: 1919
ataagcaaactgttaattt
5449
5468
1
3


 


SEQ ID NO: 917
agaagggaatcttatattt
2075
2094
SEQ ID NO: 1920
aaatgcactgctgcgttct
4892
4911
1
3


 


SEQ ID NO: 918
gaagggaatcttatatttg
2076
2095
SEQ ID NO: 1921
caaaaacattttcaacttc
5279
5298
1
3


 


SEQ ID NO: 919
tgatccaaataactacctt
2093
2112
SEQ ID NO: 1922
aaggaagaaagaaaaatca
3453
3472
1
3


 


SEQ ID NO: 920
tggatttgcttcagctgac
2150
2169
SEQ ID NO: 1923
gtcagcccagttccttcca
10924
10943
1
3


 


SEQ ID NO: 921
tttgcttcagctgacctca
2154
2173
SEQ ID NO: 1924
tgaggaaactcagatcaaa
12257
12276
1
3


 


SEQ ID NO: 922
cttggaaggaaaaggcttt
2183
2202
SEQ ID NO: 1925
aaagcattggtagagcaag
7842
7861
1
3


 


SEQ ID NO: 923
tggaaggaaaaggctttga
2185
2204
SEQ ID NO: 1926
tcaagtctgtgggattcca
4078
4097
1
3


 


SEQ ID NO: 924
ggctttgagccaacattgg
2196
2215
SEQ ID NO: 1927
ccaagaggtatttaaagcc
12950
12969
1
3


 


SEQ ID NO: 925
tgagccaacattggaagct
2201
2220
SEQ ID NO: 1928
agctttctgccactgctca
13513
13532
1
3


 


SEQ ID NO: 926
gagccaacattggaagctc
2202
2221
SEQ ID NO: 1929
gagctttctgccactgctc
13512
13531
1
3


 


SEQ ID NO: 927
aacattggaagctcttttt
2207
2226
SEQ ID NO: 1930
aaaagaaacagcatttgtt
4531
4550
1
3


 


SEQ ID NO: 928
tggaagctctttttgggaa
2212
2231
SEQ ID NO: 1931
ttccggcacgtgggttcca
3777
3796
1
3


 


SEQ ID NO: 929
ctctttttgggaagcaagg
2218
2237
SEQ ID NO: 1932
ccttactgactttgcagag
7790
7809
1
3


 


SEQ ID NO: 930
tttttgggaagcaaggatt
2221
2240
SEQ ID NO: 1933
aatcattgaaaaattaaaa
6722
6741
1
3


 


SEQ ID NO: 931
ttttcccagacagtgtcaa
2239
2258
SEQ ID NO: 1934
ttgatgaaatcattgaaaa
6715
6734
1
3


 


SEQ ID NO: 932
ttggctataccaaagatga
2323
2342
SEQ ID NO: 1935
tcattgctcccggagccaa
2668
2687
1
3


 


SEQ ID NO: 933
ataccaaagatgataaaca
2329
2348
SEQ ID NO: 1936
tgttgcttttgtaaagtat
6272
6291
1
3


 


SEQ ID NO: 934
gagcaggatatggtaaatg
2349
2368
SEQ ID NO: 1937
catttcagccttcgggctc
4254
4273
1
3


 


SEQ ID NO: 935
atggtaaatggaataatgc
2358
2377
SEQ ID NO: 1938
gcatgcctagtttctccat
9946
9965
1
3


 


SEQ ID NO: 936
tggtaaatggaataatgct
2359
2378
SEQ ID NO: 1939
agcacagtacgaaaaacca
10801
10820
1
3


 


SEQ ID NO: 937
taaatggaataatgctcag
2362
2381
SEQ ID NO: 1940
ctgaaagagatgaaattta
13059
13078
1
3


 


SEQ ID NO: 938
tggaataatgctcagtgtt
2366
2385
SEQ ID NO: 1941
aacagatttgaggattcca
7973
7992
1
3


 


SEQ ID NO: 939
tcagtgttgagaagctgat
2377
2396
SEQ ID NO: 1942
atcacaactcctccactga
9534
9553
1
3


 


SEQ ID NO: 940
cagtgttgagaagctgatt
2378
2397
SEQ ID NO: 1943
aatcacaactcctccactg
9533
9552
1
3


 


SEQ ID NO: 941
agtgttgagaagctgatta
2379
2398
SEQ ID NO: 1944
taatcacaactcctccact
9532
9551
1
3


 


SEQ ID NO: 942
gattaaagatttgaaatcc
2393
2412
SEQ ID NO: 1945
ggatactaagtaccaaatc
6866
6885
1
3


 


SEQ ID NO: 943
gatttgaaatccaaagaag
2400
2419
SEQ ID NO: 1946
cttccgtttaccagaaatc
8240
8259
1
3


 


SEQ ID NO: 944
atttgaaatccaaagaagt
2401
2420
SEQ ID NO: 1947
acttccgtttaccagaaat
8239
8258
1
3


 


SEQ ID NO: 945
atccaaagaagtcccggaa
2408
2427
SEQ ID NO: 1948
ttccaatttccctgtggat
3680
3699
1
3


 


SEQ ID NO: 946
tccaaagaagtcccggaag
2409
2428
SEQ ID NO: 1949
cttccaatttccctgtgga
3679
3698
1
3


 


SEQ ID NO: 947
agagcctacctccgcatct
2430
2449
SEQ ID NO: 1950
agattaatccgctggctct
8563
8582
1
3


 


SEQ ID NO: 948
gagcctacctccgcatctt
2431
2450
SEQ ID NO: 1951
aagattaatccgctggctc
8562
8581
1
3


 


SEQ ID NO: 949
cttgggagaggagcttggt
2447
2466
SEQ ID NO: 1952
accactgggacctaccaag
12519
12538
1
3


 


SEQ ID NO: 950
ggagcttggttttgccagt
2456
2475
SEQ ID NO: 1953
actggtggcaaaaccctcc
2726
2745
1
3


 


SEQ ID NO: 951
ttggttttgccagtctcca
2461
2480
SEQ ID NO: 1954
tggagaagccacactccaa
10763
10782
1
3


 


SEQ ID NO: 952
cagtctccatgacctccag
2471
2490
SEQ ID NO: 1955
ctggtcgcctgccaaactg
3530
3549
1
3


 


SEQ ID NO: 953
ctccatgacctccagctcc
2475
2494
SEQ ID NO: 1956
ggagtcattgctcccggag
2664
2683
1
3


 


SEQ ID NO: 954
ctgggaaagctgcttctga
2493
2512
SEQ ID NO: 1957
tcagaaagctaccttccag
7931
7950
1
3


 


SEQ ID NO: 955
gaggtcatcaggaagggct
2553
2572
SEQ ID NO: 1958
agccagaagtgagatcctc
3506
3525
1
3


 


SEQ ID NO: 956
aagaatgacttttttcttc
2574
2593
SEQ ID NO: 1959
gaaggcatctgggagtctt
3827
3846
1
3


 


SEQ ID NO: 957
cttttttcttcactacatc
2582
2601
SEQ ID NO: 1960
gatgcttacaacactaaag
6099
6118
1
3


 


SEQ ID NO: 958
catcttcatggagaatgcc
2597
2616
SEQ ID NO: 1961
ggcacttccaaaattgatg
10710
10729
1
3


 


SEQ ID NO: 959
cttcatggagaatgccttt
2600
2619
SEQ ID NO: 1962
aaagttaattgggaagaag
12273
12292
1
3


 


SEQ ID NO: 960
aatgcctttgaactcccca
2610
2629
SEQ ID NO: 1963
tgggctggcttcagccatt
5729
5748
1
3


 


SEQ ID NO: 961
gcctttgaactccccactg
2613
2632
SEQ ID NO: 1964
cagtctgaacattgcaggc
5375
5394
1
3


 


SEQ ID NO: 962
caaggctggagtaaaactg
2684
2703
SEQ ID NO: 1965
cagtgcaacgaccaacttg
5072
5091
1
3


 


SEQ ID NO: 963
tggagtaaaactggaagta
2690
2709
SEQ ID NO: 1966
tactccaacgccagctcca
3051
3070
1
3


 


SEQ ID NO: 964
ggaagtagccaacatgcag
2702
2721
SEQ ID NO: 1967
ctgccatctcgagagttcc
4098
4117
1
3


 


SEQ ID NO: 965
tttgtgacaaatatgggca
2757
2776
SEQ ID NO: 1968
tgcctttgtgtacaccaaa
11228
11247
1
3


 


SEQ ID NO: 966
tgtgacaaatatgggcatc
2759
2778
SEQ ID NO: 1969
gatgggtctctacgccaca
4377
4396
1
3


 


SEQ ID NO: 967
ggacttcgctaggagtggg
2786
2805
SEQ ID NO: 1970
cccaaggccacaggggtcc
12333
12352
1
3


 


SEQ ID NO: 968
gtggggtccagatgaacac
2800
2819
SEQ ID NO: 1971
gtgttctagacctctccac
4171
4190
1
3


 


SEQ ID NO: 969
ttccacgagtcgggtctgg
2826
2845
SEQ ID NO: 1972
ccagaatctgtaccaggaa
12554
12573
1
3


 


SEQ ID NO: 970
agtcgggtctggaggctca
2833
2852
SEQ ID NO: 1973
tgagaactacgagctgact
4799
4818
1
3


 


SEQ ID NO: 971
tcgggtctggaggctcatg
2835
2854
SEQ ID NO: 1974
catgaaggccaaattccga
7631
7650
1
3


 


SEQ ID NO: 972
aaaagctgggaagctgaag
2861
2880
SEQ ID NO: 1975
cttccagacacctgatttt
7943
7962
1
3


 


SEQ ID NO: 973
aagctgaagtttatcattc
2871
2890
SEQ ID NO: 1976
gaatttacaattgttgctt
6261
6280
1
3


 


SEQ ID NO: 974
gagaccagtcaagctgctc
2900
2919
SEQ ID NO: 1977
gagcttcaggaagcttctc
13206
13225
1
3


 


SEQ ID NO: 975
gcaacacattacatttggt
2926
2945
SEQ ID NO: 1978
accagtcagatattgttgc
10183
10202
1
3


 


SEQ ID NO: 976
acattacatttggtctcta
2931
2950
SEQ ID NO: 1979
tagaatatgaactaaatgt
11881
11900
1
3


 


SEQ ID NO: 977
cattacatttggtctctac
2932
2951
SEQ ID NO: 1980
gtagctgagaaaatcaatg
7098
7117
1
3


 


SEQ ID NO: 978
aaacggaggtgatcccacc
2956
2975
SEQ ID NO: 1981
ggtggataccctgaagttt
3197
3216
1
3


 


SEQ ID NO: 979
attgagaacaggcagtcct
2979
2998
SEQ ID NO: 1982
aggaaaagcgcacctcaat
12023
12042
1
3


 


SEQ ID NO: 980
tgagaacaggcagtcctgg
2981
3000
SEQ ID NO: 1983
ccagcttccccacatctca
8333
8352
1
3


 


SEQ ID NO: 981
ctgcacctcaggcgcttac
3035
3054
SEQ ID NO: 1984
gtaagaaaatacagagcag
6432
6451
1
3


 


SEQ ID NO: 982
tccacagactccgcctcct
3066
3085
SEQ ID NO: 1985
aggacagagccttggtgga
3184
3203
1
3


 


SEQ ID NO: 983
ctgaccggggacaccagat
3093
3112
SEQ ID NO: 1986
atctgatgaggaaactcag
12251
12270
1
3


 


SEQ ID NO: 984
tagagctggaactgaggcc
3112
3131
SEQ ID NO: 1987
ggcctctctggggcatcta
5136
5155
1
3


 


SEQ ID NO: 985
ctatgagctccagagagag
3167
3186
SEQ ID NO: 1988
ctctcacaaaaaagtatag
6541
6560
1
3


 


SEQ ID NO: 986
cttggtggataccctgaag
3194
3213
SEQ ID NO: 1989
cttcaggaagcttctcaag
13209
13228
1
3


 


SEQ ID NO: 987
ttgtaactcaagcagaagg
3214
3233
SEQ ID NO: 1990
ccttacacaataatcacaa
9522
9541
1
3


 


SEQ ID NO: 988
taactcaagcagaaggtgc
3217
3236
SEQ ID NO: 1991
gcacctagctggaaagtta
6947
6966
1
3


 


SEQ ID NO: 989
gcagaaggtgcgaagcaga
3225
3244
SEQ ID NO: 1992
tctgtgggattccatctgc
4083
4102
1
3


 


SEQ ID NO: 990
cagaaggtgcgaagcagac
3226
3245
SEQ ID NO: 1993
gtctgtgggattccatctg
4082
4101
1
3


 


SEQ ID NO: 991
gtatgaccttgtccagtga
3280
3299
SEQ ID NO: 1994
tcaccaacggagaacatac
10843
10862
1
3


 


SEQ ID NO: 992
tatgaccttgtccagtgaa
3281
3300
SEQ ID NO: 1995
ttcaccaacggagaacata
10842
10861
1
3


 


SEQ ID NO: 993
gaagtccaaattccggatt
3297
3316
SEQ ID NO: 1996
aatctcaagctttctcttc
10044
10063
1
3


 


SEQ ID NO: 994
gagggcaaaacgtcttaca
3363
3382
SEQ ID NO: 1997
tgtacaactggtccgcctc
4207
4226
1
3


 


SEQ ID NO: 995
agggcaaaacgtcttacag
3364
3383
SEQ ID NO: 1998
ctgttaggacaccagccct
4054
4073
1
3


 


SEQ ID NO: 996
gactcaccctggacattca
3382
3401
SEQ ID NO: 1999
tgaaattcaatcacaagtc
9068
9087
1
3


 


SEQ ID NO: 997
ctggacattcagaacaaga
3390
3409
SEQ ID NO: 2000
tcttttcttttcagcccag
9218
9237
1
3


 


SEQ ID NO: 998
tcatgggcgacctaagttg
3427
3446
SEQ ID NO: 2001
caactgcagacatatatga
6627
6646
1
3


 


SEQ ID NO: 999
tgggcgacctaagttgtga
3430
3449
SEQ ID NO: 2002
tcactccattaacctccca
6308
6327
1
3


 


SEQ ID NO: 1000
agttgtgacacaaaggaag
3441
3460
SEQ ID NO: 2003
cttcttttccaattgaact
13830
13849
1
3


 


SEQ ID NO: 1001
tgacacaaaggaagaaaga
3446
3465
SEQ ID NO: 2004
tcttcatcttcatctgtca
10212
10231
1
3


 


SEQ ID NO: 1002
gacacaaaggaagaaagaa
3447
3466
SEQ ID NO: 2005
ttcttcatcttcatctgtc
10211
10230
1
3


 


SEQ ID NO: 1003
ggaagaaagaaaaatcaag
3455
3474
SEQ ID NO: 2006
cttgtcatgcctacgttcc
11340
11359
1
3


 


SEQ ID NO: 2007
aaaaagcgatggccgggtc
3947
3966
SEQ ID NO: 2313
gaccttgcaagaatatttt
6335
6354
1
3


 


SEQ ID NO: 2008
gtcaaatataccttgaaca
3963
3982
SEQ ID NO: 2314
tgttaacaaattccttgac
7355
7374
1
3


 


SEQ ID NO: 2009
tgaacaagaacagtttgaa
3976
3995
SEQ ID NO: 2315
ttcaagttcctgaccttca
8302
8321
1
3


 


SEQ ID NO: 2010
agtttgaaaattgagattc
3987
4006
SEQ ID NO: 2316
gaatctggctccctcaact
9039
9058
1
3


 


SEQ ID NO: 2011
gtttgaaaattgagattcc
3988
4007
SEQ ID NO: 2317
ggaaataccaagtcaaaac
10446
10465
1
3


 


SEQ ID NO: 2012
ttgaaaattgagattcctt
3990
4009
SEQ ID NO: 2318
aaggaaaagcgcacctcaa
12022
12041
1
3


 


SEQ ID NO: 2013
ctaaagatgttagagactg
4038
4057
SEQ ID NO: 2319
cagttgaccacaagcttag
10537
10556
1
3


 


SEQ ID NO: 2014
atgttagagactgttagga
4044
4063
SEQ ID NO: 2320
tccttaacaccttccacat
8065
8084
1
3


 


SEQ ID NO: 2015
cagccctccacttcaagtc
4066
4085
SEQ ID NO: 2321
gacttctctagtcaggctg
8805
8824
1
3


 


SEQ ID NO: 2016
agccctccacttcaagtct
4067
4086
SEQ ID NO: 2322
agacatcgctgggctggct
5720
5739
1
3


 


SEQ ID NO: 2017
ccatctgccatctcgagag
4094
4113
SEQ ID NO: 2323
ctctcaaatgacatgatgg
5322
5341
1
3


 


SEQ ID NO: 2018
attcccaagttgtatcaac
4134
4153
SEQ ID NO: 2324
gttgagaagccccaagaat
6246
6265
1
3


 


SEQ ID NO: 2019
tcaactgcaagtgcctctc
4148
4167
SEQ ID NO: 2325
gagatcaagacactgttga
8835
8854
1
3


 


SEQ ID NO: 2020
ggtgttctagacctctcca
4170
4189
SEQ ID NO: 2326
tggaaccctctccctcacc
4727
4746
1
3


 


SEQ ID NO: 2021
ctccacgaatgtctacagc
4184
4203
SEQ ID NO: 2327
gctggtaacctaaaaggag
5580
5599
1
3


 


SEQ ID NO: 2022
cacgaatgtctacagcaac
4187
4206
SEQ ID NO: 2328
gttgcccaccatcatcgtg
11663
11682
1
3


 


SEQ ID NO: 2023
acgaatgtctacagcaact
4188
4207
SEQ ID NO: 2329
agttgcccaccatcatcgt
11662
11681
1
3


 


SEQ ID NO: 2024
tcctacagtggtggcaaca
4224
4243
SEQ ID NO: 2330
tgttagttgctcttaagga
13351
13370
1
3


 


SEQ ID NO: 2025
cgttaccacatgaaggctg
4272
4291
SEQ ID NO: 2331
cagcaagtacctgagaacg
8603
8622
1
3


 


SEQ ID NO: 2026
gaaggctgactctgtggtt
4283
4302
SEQ ID NO: 2332
aacctatgccttaatcttc
13161
13180
1
3


 


SEQ ID NO: 2027
tgtggttgacctgctttcc
4295
4314
SEQ ID NO: 2333
ggaaagttaaaacaacaca
6957
6976
1
3


 


SEQ ID NO: 2028
cctgctttcctacaatgtg
4304
4323
SEQ ID NO: 2334
cacaccttgacattgcagg
11080
11099
1
3


 


SEQ ID NO: 2029
ctgctttcctacaatgtgc
4305
4324
SEQ ID NO: 2335
gcacaccttgacattgcag
11079
11098
1
3


 


SEQ ID NO: 2030
tcctacaatgtgcaaggat
4311
4330
SEQ ID NO: 2336
atccgctggctctgaagga
8569
8588
1
3


 


SEQ ID NO: 2031
tatgaccacaagaatacgt
4344
4363
SEQ ID NO: 2337
acgtccgtgtgccttcata
9976
9995
1
3


 


SEQ ID NO: 2032
atgaccacaagaatacgtc
4345
4364
SEQ ID NO: 2338
gacgtccgtgtgccttcat
9975
9994
1
3


 


SEQ ID NO: 2033
gaatacgtctacactatca
4355
4374
SEQ ID NO: 2339
tgattatctgaattcattc
6479
6498
1
3


 


SEQ ID NO: 2034
tttctagattcgaatatca
4398
4417
SEQ ID NO: 2340
tgatttacatgatttgaaa
6677
6696
1
3


 


SEQ ID NO: 2035
gattcgaatatcaaattca
4404
4423
SEQ ID NO: 2341
tgaagtagctgagaaaatc
7094
7113
1
3


 


SEQ ID NO: 2036
gaaacaacccagtctcaaa
4441
4460
SEQ ID NO: 2342
tttgaaaaattctcttttc
9206
9225
1
3


 


SEQ ID NO: 2037
cccagtctcaaaaggttta
4448
4467
SEQ ID NO: 2343
taaattcattactcctggg
11294
11313
1
3


 


SEQ ID NO: 2038
ctcaaaaggtttactaata
4454
4473
SEQ ID NO: 2344
tattcaaaactgagttgag
12223
12242
1
3


 


SEQ ID NO: 2039
tcaaaaggtttactaatat
4455
4474
SEQ ID NO: 2345
atattcaaaactgagttga
12222
12241
1
3


 


SEQ ID NO: 2040
aaaaggtttactaatattc
4457
4476
SEQ ID NO: 2346
gaatttgaaagttcgtttt
9272
9291
1
3


 


SEQ ID NO: 2041
gaaacagcatttgtttgtc
4535
4554
SEQ ID NO: 2347
gacagcatcttcgtgtttc
11206
11225
1
3


 


SEQ ID NO: 2042
atttgtttgtcaaagaagt
4543
4562
SEQ ID NO: 2348
acttaaaaaatataaaaat
8014
8033
1
3


 


SEQ ID NO: 2043
tcaagattgatgggcagtt
4561
4580
SEQ ID NO: 2349
aactctcaagtcaagttga
13414
13433
1
3


 


SEQ ID NO: 2044
ttcagagtctcttcgttct
4578
4597
SEQ ID NO: 2350
agaagatggcaaatttgaa
11987
12006
1
3


 


SEQ ID NO: 2045
cagagtctcttcgttctat
4580
4599
SEQ ID NO: 2351
atagcatggacttcttctg
8865
8884
1
3


 


SEQ ID NO: 2046
atgctaaaggcacatatgg
4597
4616
SEQ ID NO: 2352
ccatttgagatcacggcat
9237
9256
1
3


 


SEQ ID NO: 2047
gcacatatggcctgtcttg
4606
4625
SEQ ID NO: 2353
caagttggcaagtaagtgc
9364
9383
1
3


 


SEQ ID NO: 2048
gagtccaacctgaggttta
4659
4678
SEQ ID NO: 2354
taaagtgccacttttactc
6182
6201
1
3


 


SEQ ID NO: 2049
agtccaacctgaggtttaa
4660
4679
SEQ ID NO: 2355
ttaacagggaagatagact
9300
9319
1
3


 


SEQ ID NO: 2050
cctacctccaaggcaccaa
4684
4703
SEQ ID NO: 2356
ttggcaagtaagtgctagg
9368
9387
1
3


 


SEQ ID NO: 2051
gaagatggaaccctctccc
4722
4741
SEQ ID NO: 2357
gggaagaagaggcagcttc
12283
12302
1
3


 


SEQ ID NO: 2052
tgatctgcaaagtggcatc
4754
4773
SEQ ID NO: 2358
gatgaggaaactcagatca
12255
12274
1
3


 


SEQ ID NO: 2053
gatctgcaaagtggcatca
4755
4774
SEQ ID NO: 2359
tgatgaggaaactcagatc
12254
12273
1
3


 


SEQ ID NO: 2054
gcttccctaaagtatgaga
4785
4804
SEQ ID NO: 2360
tctcgtgtctaggaaaagc
5969
5988
1
3


 


SEQ ID NO: 2055
gtatgagaactacgagctg
4796
4815
SEQ ID NO: 2361
cagcttaagagacacatac
6912
6931
1
3


 


SEQ ID NO: 2056
tctaacaagatggatatga
4860
4879
SEQ ID NO: 2362
tcattttccaactaataga
13024
13043
1
3


 


SEQ ID NO: 2057
ctgctgcgttctgaatatc
4899
4918
SEQ ID NO: 2363
gatacaagaaaaactgcag
6893
6912
1
3


 


SEQ ID NO: 2058
tcattgaggttcttcagcc
4932
4951
SEQ ID NO: 2364
ggctcatatgctgaaatga
5340
5359
1
3


 


SEQ ID NO: 2059
ttctggatcactaaattcc
4955
4974
SEQ ID NO: 2365
ggaaggacaaggcccagaa
12541
12560
1
3


 


SEQ ID NO: 2060
ccatggtcttgagttaaat
4973
4992
SEQ ID NO: 2366
atttttattcctgccatgg
10095
10114
1
3


 


SEQ ID NO: 2061
tcttaggcactgacaaaat
4999
5018
SEQ ID NO: 2367
attttttgcaagttaaaga
14011
14030
1
3


 


SEQ ID NO: 2062
acaaggcgacactaaggat
5032
5051
SEQ ID NO: 2368
atccatgatctacatttgt
6786
6805
1
3


 


SEQ ID NO: 2063
tgcaacgaccaacttgaag
5075
5094
SEQ ID NO: 2369
cttcagggaacacaatgca
5177
5196
1
3


 


SEQ ID NO: 2064
caacttgaagtgtagtctc
5084
5103
SEQ ID NO: 2370
gagatgagagatgccgttg
6231
6250
1
3


 


SEQ ID NO: 2065
gctggagaatgagctgaat
5108
5127
SEQ ID NO: 2371
attctcttttcttttcagc
9214
9233
1
3


 


SEQ ID NO: 2066
gcagagcttggcctctctg
5127
5146
SEQ ID NO: 2372
cagatacaagaaaaactgc
6891
6910
1
3


 


SEQ ID NO: 2067
tctctggggcatctatgaa
5140
5159
SEQ ID NO: 2373
ttcattcaattgggagaga
6491
6510
1
3


 


SEQ ID NO: 2068
tctggggcatctatgaaat
5142
5161
SEQ ID NO: 2374
atttgtaagaaaatacaga
6428
6447
1
3


 


SEQ ID NO: 2069
aacacaatgcaaaattcag
5185
5204
SEQ ID NO: 2375
ctgaagcattaaaactgtt
7498
7517
1
3


 


SEQ ID NO: 2070
ctcacagagctatcactgg
5223
5242
SEQ ID NO: 2376
ccagatgctgaacagtgag
8141
8160
1
3


 


SEQ ID NO: 2071
tgggaagtgcttatcaggc
5239
5258
SEQ ID NO: 2377
gcctacgttccatgtccca
11348
11367
1
3


 


SEQ ID NO: 2072
ttcaaggtcagtcaagaag
5295
5314
SEQ ID NO: 2378
cttcagtgcagaatatgaa
11969
11988
1
3


 


SEQ ID NO: 2073
aatgacatgatgggctcat
5328
5347
SEQ ID NO: 2379
atgattatctgaattcatt
6478
6497
1
3


 


SEQ ID NO: 2074
gctcatatgctgaaatgaa
5341
5360
SEQ ID NO: 2380
ttcagccattgacatgagc
5738
5757
1
3


 


SEQ ID NO: 2075
atatgctgaaatgaaattt
5345
5364
SEQ ID NO: 2381
aaatagctattgctaatat
6694
6713
1
3


 


SEQ ID NO: 2076
tctgaacattgcaggctta
5378
5397
SEQ ID NO: 2382
taagaaccagaagatcaga
10988
11007
1
3


 


SEQ ID NO: 2077
gaacattgcaggcttatca
5381
5400
SEQ ID NO: 2383
tgatatcgacgtgaggttc
12482
12501
1
3


 


SEQ ID NO: 2078
tgcaggcttatcactggac
5387
5406
SEQ ID NO: 2384
gtcctggattccacatgca
11844
11863
1
3


 


SEQ ID NO: 2079
tcaaaacttgacaacattt
5412
5431
SEQ ID NO: 2385
aaattccttgacatgttga
7362
7381
1
3


 


SEQ ID NO: 2080
atttacagctctgacaagt
5427
5446
SEQ ID NO: 2386
acttaaaaaatataaaaat
8014
8033
1
3


 


SEQ ID NO: 2081
ctctgacaagttttataag
5435
5454
SEQ ID NO: 2387
cttacttgaattccaagag
10666
10685
1
3


 


SEQ ID NO: 2082
gttaatttacagctacagc
5460
5479
SEQ ID NO: 2388
gctgcatgtggctggtaac
5570
5589
1
3


 


SEQ ID NO: 2083
ttctctggtaactacttta
5483
5502
SEQ ID NO: 2389
taaaagattactttgagaa
7267
7286
1
3


 


SEQ ID NO: 2084
cctaaaaggagcctaccaa
5588
5507
SEQ ID NO: 2390
ttggcaagtaagtgctagg
9368
9387
1
3


 


SEQ ID NO: 2085
aaaaggagcctaccaaaat
5591
5610
SEQ ID NO: 2391
atttacaattgttgctttt
6263
6282
1
3


 


SEQ ID NO: 2086
aggagcctaccaaaataat
5594
5613
SEQ ID NO: 2392
attacctatgatttctcct
10119
10138
1
3


 


SEQ ID NO: 2087
ataatgaaataaaacacat
5608
5627
SEQ ID NO: 2393
atgtcaaacactttgttat
7057
7076
1
3


 


SEQ ID NO: 2088
aaaacacatctatgccatc
5618
5637
SEQ ID NO: 2394
gatgaagatgacgactttt
12150
12169
1
3


 


SEQ ID NO: 2089
tgctaaggttcagggtgtg
5678
5697
SEQ ID NO: 2395
cacaagtcgattcccagca
9079
9098
1
3


 


SEQ ID NO: 2090
gagtttagccatcggctca
5697
5716
SEQ ID NO: 2396
tgaggtgactcagagactc
7442
7461
1
3


 


SEQ ID NO: 2091
gctggcttcagccattgac
5732
5751
SEQ ID NO: 2397
gtcagtgaagttctccagc
8588
8607
1
3


 


SEQ ID NO: 2092
atttcagcaatgtcttccg
5782
5801
SEQ ID NO: 2398
cggagcatgggagtgaaat
8620
8639
1
3


 


SEQ ID NO: 2093
tttcagcaatgtcttccgt
5783
5802
SEQ ID NO: 2399
acggagcatgggagtgaaa
8619
8638
1
3


 


SEQ ID NO: 2094
ttcagcaatgtcttccgtt
5784
5803
SEQ ID NO: 2400
aacggagcatgggagtgaa
8618
8637
1
3


 


SEQ ID NO: 2095
cagcaatgtcttccgttct
5786
5805
SEQ ID NO: 2401
agaagtgtcttcaaagctg
12404
12423
1
3


 


SEQ ID NO: 2096
tgtcttccgttctgtaatg
5792
5811
SEQ ID NO: 2402
cattcaattgggagagaca
6493
6512
1
3


 


SEQ ID NO: 2097
gtcttccgttctgtaatgg
5793
5812
SEQ ID NO: 2403
ccattcagtctctcaagac
12967
12986
1
3


 


SEQ ID NO: 2098
atgggaaactcgctctctg
5851
5870
SEQ ID NO: 2404
cagataaaaaactcaccat
12205
12224
1
3


 


SEQ ID NO: 2099
ggagaacatactgggcagc
5871
5890
SEQ ID NO: 2405
gctgttttgaagactctcc
1080
1099
1
3


 


SEQ ID NO: 2100
gttgaaagcagaacctctg
5906
5925
SEQ ID NO: 2406
cagaattcataatcccaac
8266
8285
1
3


 


SEQ ID NO: 2101
gtctaggaaaagcatcagt
5975
5994
SEQ ID NO: 2407
actgcaagatttttcagac
13604
13623
1
3


 


SEQ ID NO: 2102
agcatcagtgcagctcttg
5985
6004
SEQ ID NO: 2408
caagaacctgttagttgct
13343
13362
1
3


 


SEQ ID NO: 2103
ttgaacacaaagtcagtgc
6001
6020
SEQ ID NO: 2409
gcacatcaatattgatcaa
6410
6429
1
3


 


SEQ ID NO: 2104
gcagacaggcacctggaaa
6038
6057
SEQ ID NO: 2410
tttcagatggcattgctgc
11602
11621
1
3


 


SEQ ID NO: 2105
gaaactcaagacccaattt
6053
6072
SEQ ID NO: 2411
aaatcccatccaggttttc
8029
8048
1
3


 


SEQ ID NO: 2106
acaatgaatacagccagga
6076
6095
SEQ ID NO: 2412
tcctttggctgtgctttgt
9674
9693
1
3


 


SEQ ID NO: 2107
cttggatgcttacaacact
6095
6114
SEQ ID NO: 2413
agtgaagttctccagcaag
8591
8610
1
3


 


SEQ ID NO: 2108
ttggcgtggagcttactgg
6124
6143
SEQ ID NO: 2414
ccagaattcataatcccaa
8265
8284
1
3


 


SEQ ID NO: 2109
cacttttactcagtgagcc
6190
6209
SEQ ID NO: 2415
ggctattgatgttagagtg
6980
6999
1
3


 


SEQ ID NO: 2110
tttagagatgagagatgcc
6227
6246
SEQ ID NO: 2416
ggcatgatgctcatttaaa
9169
9188
1
3


 


SEQ ID NO: 2111
gagaagccccaagaattta
6249
6268
SEQ ID NO: 2417
taaagccattcagtctctc
12962
12981
1
3


 


SEQ ID NO: 2112
caattgttgcttttgtaaa
6268
6287
SEQ ID NO: 2418
tttaaccagtcagatattg
10179
10198
1
3


 


SEQ ID NO: 2113
ttttgtaaagtatgataaa
6278
6297
SEQ ID NO: 2419
tttattgctgaatccaaaa
13647
13666
1
3


 


SEQ ID NO: 2114
ttgtaaagtatgataaaaa
6280
6299
SEQ ID NO: 2420
ttttgagaggaatcgacaa
6350
6369
1
3


 


SEQ ID NO: 2115
ttcactccattaacctccc
6307
6326
SEQ ID NO: 2421
gggaaaaaacaggcttgaa
9568
9587
1
3


 


SEQ ID NO: 2116
ttttgagaccttgcaagaa
6329
6348
SEQ ID NO: 2422
ttctctctatgggaaaaaa
9558
9577
1
3


 


SEQ ID NO: 2117
accttgcaagaatattttg
6336
6355
SEQ ID NO: 2423
caaaagaagcccaagaggt
12940
12959
1
3


 


SEQ ID NO: 2118
tcaatattgatcaatttgt
6415
6434
SEQ ID NO: 2424
acaaagcagattatgttga
11821
11840
1
3


 


SEQ ID NO: 2119
cagagcagccctgggaaaa
6443
6462
SEQ ID NO: 2425
ttttcagaccaactctctg
13614
13633
1
3


 


SEQ ID NO: 2120
cctgggaaaactcccacag
6452
6471
SEQ ID NO: 2426
ctgtctctggtcagccagg
7716
7735
1
3


 


SEQ ID NO: 2121
actcccacagcaagctaat
6461
6480
SEQ ID NO: 2427
attacacttcctttcgagt
12861
12880
1
3


 


SEQ ID NO: 2122
aattcattcaattgggaga
6489
6508
SEQ ID NO: 2428
tctcttcctccatggaatt
10471
10490
1
3


 


SEQ ID NO: 2123
ttcaattgggagagacaag
6495
6514
SEQ ID NO: 2429
cttggagtgccagtttgaa
11800
11819
1
3


 


SEQ ID NO: 2124
aggagaaactgactgctct
6526
6545
SEQ ID NO: 2430
agagcttatgggatttcct
11155
11174
1
3


 


SEQ ID NO: 2125
actgactgctctcacaaaa
6533
6552
SEQ ID NO: 2431
ttttggcaagctatacagt
8372
8391
1
3


 


SEQ ID NO: 2126
gactgctctcacaaaaaag
6536
6555
SEQ ID NO: 2432
ctttgtgagtttatcagtc
9687
9706
1
3


 


SEQ ID NO: 2127
cagacatatatgatacaat
6633
6652
SEQ ID NO: 2433
attggatatccaagatctg
1925
1944
1
3


 


SEQ ID NO: 2128
aatttgatcagtatattaa
6849
6668
SEQ ID NO: 2434
ttaaaagaaatcttcaatt
13807
13826
1
3


 


SEQ ID NO: 2129
tatgatttacatgatttga
6675
6694
SEQ ID NO: 2435
tcaatgattatatcccata
13120
13139
1
3


 


SEQ ID NO: 2130
tttgaaaatagctattgct
6689
6708
SEQ ID NO: 2436
agcacagaaaaaattcaaa
13856
13875
1
3


 


SEQ ID NO: 2131
ttgaaaatagctattgcta
6690
6709
SEQ ID NO: 2437
tagcacagaaaaaattcaa
13855
13874
1
3


 


SEQ ID NO: 2132
aatagctattgctaatatt
6695
6714
SEQ ID NO: 2438
aataaatggagtctttatt
14076
14095
1
3


 


SEQ ID NO: 2133
attattgatgaaatcattg
6711
6730
SEQ ID NO: 2439
caataccagaattcataat
8260
8279
1
3


 


SEQ ID NO: 2134
aaagtcttgatgagcacta
6739
6758
SEQ ID NO: 2440
tagtgattacacttccttt
12856
12875
1
3


 


SEQ ID NO: 2135
aagtcttgatgagcactat
6740
6759
SEQ ID NO: 2441
atagcaacactaaatactt
8761
8780
1
3


 


SEQ ID NO: 2136
ttgatgagcactatcatat
6745
6764
SEQ ID NO: 2442
atatccaagatgagatcaa
13093
13112
1
3


 


SEQ ID NO: 2137
taattttagtaaaaacaat
6769
6788
SEQ ID NO: 2443
attgagattccctccatta
11694
11713
1
3


 


SEQ ID NO: 2138
ttttagtaaaaacaatcca
6772
6791
SEQ ID NO: 2444
tggagtgccagtttgaaaa
11802
11821
1
3


 


SEQ ID NO: 2139
acatttgtttattgaaaat
6797
6816
SEQ ID NO: 2445
atttcctaaagctggatgt
11167
11186
1
3


 


SEQ ID NO: 2140
attgattttaacaaaagtg
6816
6835
SEQ ID NO: 2446
cactgttccagttgtcaat
9863
9882
1
3


 


SEQ ID NO: 2141
attttaacaaaagtggaag
6820
6839
SEQ ID NO: 2447
cttaaaagacttaaaaaat
8006
8025
1
3


 


SEQ ID NO: 2142
aaatcagaatccagataca
6880
6899
SEQ ID NO: 2448
tgtaccataagccatattt
10080
10099
1
3


 


SEQ ID NO: 2143
gaatccagatacaagaaaa
6886
6905
SEQ ID NO: 2449
ttttctaaacttgaaattc
9057
9076
1
3


 


SEQ ID NO: 2144
ttaagagacacatacagaa
6916
6935
SEQ ID NO: 2450
ttcttaaacattcctttaa
9483
9502
1
3


 


SEQ ID NO: 2145
atccagcacctagctggaa
6942
6961
SEQ ID NO: 2451
ttccaatttccctgtggat
3680
3699
1
3


 


SEQ ID NO: 2146
tgagcatgtcaaacacttt
7052
7071
SEQ ID NO: 2452
aaagtgccacttttactca
6183
6202
1
3


 


SEQ ID NO: 2147
gagcatgtcaaacactttg
7053
7072
SEQ ID NO: 2453
caaatgacatgatgggctc
5326
5345
1
3


 


SEQ ID NO: 2148
aaacactttgttataaatc
7062
7081
SEQ ID NO: 2454
gattatatcccatatgttt
13125
13144
1
3


 


SEQ ID NO: 2149
tgagaaaatcaatgccttc
7103
7122
SEQ ID NO: 2455
gaaggaaaagcgcacctca
12021
12040
1
3


 


SEQ ID NO: 2150
tatgaagtagaccaacaaa
7152
7171
SEQ ID NO: 2456
tttgtggagggtagtcata
10323
10342
1
3


 


SEQ ID NO: 2151
aagtagaccaacaaatcca
7156
7175
SEQ ID NO: 2457
tggatgaagatgacgactt
12148
12167
1
3


 


SEQ ID NO: 2152
aagttgaaggagactattc
7215
7234
SEQ ID NO: 2458
gaataccaatgctgaactt
10160
10179
1
3


 


SEQ ID NO: 2153
acaagttaagataaaagat
7256
7275
SEQ ID NO: 2459
atctaaattcagttcttgt
11326
11345
1
3


 


SEQ ID NO: 2154
aagataaaagattactttg
7263
7282
SEQ ID NO: 2460
caaaatagaagggaatctt
2069
2088
1
3


 


SEQ ID NO: 2155
gattactttgagaaattag
7272
7291
SEQ ID NO: 2461
ctaaacttgaaattcaatc
9061
9080
1
3


 


SEQ ID NO: 2156
tgagaaattagttggattt
7280
7299
SEQ ID NO: 2462
aaatccgtgaggtgactca
7435
7454
1
3


 


SEQ ID NO: 2157
aaattagttggatttattg
7284
7303
SEQ ID NO: 2463
caattttgagaatgaattt
10411
10430
1
3


 


SEQ ID NO: 2158
tggatttattgatgatgct
7292
7311
SEQ ID NO: 2464
agcatgcctagtttctcca
9945
9964
1
3


 


SEQ ID NO: 2159
tcattgaagatgttaacaa
7345
7364
SEQ ID NO: 2465
ttgtagatgaaaccaatga
7414
7433
1
3


 


SEQ ID NO: 2160
cattgaagatgttaacaaa
7346
7365
SEQ ID NO: 2466
tttgtagatgaaaccaatg
7413
7432
1
3


 


SEQ ID NO: 2161
attgaagatgttaacaaat
7347
7366
SEQ ID NO: 2467
atttaagtatgatttcaat
10487
10506
1
3


 


SEQ ID NO: 2162
ttgaagatgttaacaaatt
7348
7367
SEQ ID NO: 2468
aatttaagtatgatttcaa
10486
10505
1
3


 


SEQ ID NO: 2163
tgaagatgttaacaaattc
7349
7368
SEQ ID NO: 2469
gaatttaagtatgatttca
10485
10504
1
3


 


SEQ ID NO: 2164
acatgttgataaagaaatt
7372
7391
SEQ ID NO: 2470
aattccctgaagttgatgt
11479
11498
1
3


 


SEQ ID NO: 2165
tttgattaccaccagtttg
7398
7417
SEQ ID NO: 2471
caaattgaacatccccaaa
8783
8802
1
3


 


SEQ ID NO: 2166
caaaatccgtgaggtgact
7433
7452
SEQ ID NO: 2472
agtccccctaacagatttg
7964
7983
1
3


 


SEQ ID NO: 2167
aaaatccgtgaggtgactc
7434
7453
SEQ ID NO: 2473
gagtgaaatgctgtttttt
8630
8649
1
3


 


SEQ ID NO: 2168
aggtgactcagagactcaa
7444
7463
SEQ ID NO: 2474
ttgatgatatctggaacct
10723
10742
1
3


 


SEQ ID NO: 2169
gtgaaattcaggctctgga
7465
7484
SEQ ID NO: 2475
tccaatctcctcttttcac
8401
8420
1
3


 


SEQ ID NO: 2170
gttgcagtgtatctggaaa
7539
7558
SEQ ID NO: 2476
tttcaagcaaatgcacaac
8532
8551
1
3


 


SEQ ID NO: 2171
ttaagttcagcatctttgg
7608
7627
SEQ ID NO: 2477
ccaatgctgaactttttaa
10165
10184
1
3


 


SEQ ID NO: 2172
tgaaggccaaattccgaga
7633
7852
SEQ ID NO: 2478
tctcctttcttcatcttca
10205
10224
1
3


 


SEQ ID NO: 2173
aatgtatcaaatggacatt
7676
7695
SEQ ID NO: 2479
aatgaagtccggattcatt
11013
11032
1
3


 


SEQ ID NO: 2174
attcagcaggaacttcaac
7692
7711
SEQ ID NO: 2480
gttgagaagccccaagaat
6246
6265
1
3


 


SEQ ID NO: 2175
acctgtctctggtcagcca
7714
7733
SEQ ID NO: 2481
tggcaagtaagtgctaggt
9369
9388
1
3


 


SEQ ID NO: 2176
cctgtctctggtcagccag
7715
7734
SEQ ID NO: 2482
ctggacttctctagtcagg
8802
8821
1
3


 


SEQ ID NO: 2177
ggtcagccaggtttatagc
7724
7743
SEQ ID NO: 2483
gctaaaggagcagttgacc
10527
10546
1
3


 


SEQ ID NO: 2178
ccaggtttatagcacactt
7730
7749
SEQ ID NO: 2484
aagtccggattcattctgg
11017
11036
1
3


 


SEQ ID NO: 2179
gtttatagcacacttgtca
7734
7753
SEQ ID NO: 2485
tgacctgtccattcaaaac
13673
13692
1
3


 


SEQ ID NO: 2180
acttgtcacctacatttct
7745
7764
SEQ ID NO: 2486
agaaaaaggggattgaagt
10275
10294
1
3


 


SEQ ID NO: 2181
ctgattggtggactcttgc
7762
7781
SEQ ID NO: 2487
gcaagttaaagaaaatcag
14018
14037
1
3


 


SEQ ID NO: 2182
atgaaagcattggtagagc
7839
7858
SEQ ID NO: 2488
gctcatctcctttcttcat
10200
10219
1
3


 


SEQ ID NO: 2183
tgaaagcattggtagagca
7840
7859
SEQ ID NO: 2489
tgctcatctcctttcttca
10199
10218
1
3


 


SEQ ID NO: 2184
gggttcactgttcctgaaa
7860
7879
SEQ ID NO: 2490
tttcaccatagaaggaccc
8951
8970
1
3


 


SEQ ID NO: 2185
tcaagaccatccttgggac
7879
7898
SEQ ID NO: 2491
gtccccctaacagatttga
7965
7984
1
3


 


SEQ ID NO: 2186
ccttgggaccatgcctgcc
7889
7908
SEQ ID NO: 2492
ggcaccagggctcggaagg
13970
13989
1
3


 


SEQ ID NO: 2187
ttcaggctcttcagaaagc
7921
7940
SEQ ID NO: 2493
gcttgaaggaattcttgaa
9580
9599
1
3


 


SEQ ID NO: 2188
ttcagataaacttcaaaga
7996
8015
SEQ ID NO: 2494
tcttcataagttcaatgaa
13175
13194
1
3


 


SEQ ID NO: 2189
acttcaaagacttaaaaaa
8005
8024
SEQ ID NO: 2495
ttttaacaaaagtggaagt
6821
6840
1
3


 


SEQ ID NO: 2190
atcccatccaggttttcca
8031
8050
SEQ ID NO: 2496
tggagaagcaaatctggat
9464
9483
1
3


 


SEQ ID NO: 2191
gaatttaccatccttaaca
8055
8074
SEQ ID NO: 2497
tgttgaagtgtctccattc
9881
9900
1
3


 


SEQ ID NO: 2192
cattccttcctttacaatt
8081
8100
SEQ ID NO: 2498
aattccaattttgagaatg
10406
10425
1
3


 


SEQ ID NO: 2193
ttgaccagatgctgaacag
8137
8156
SEQ ID NO: 2499
ctgttgaaagatttatcaa
12924
12943
1
3


 


SEQ ID NO: 2194
aatcaccctgccagacttc
8225
8244
SEQ ID NO: 2500
gaagttctcaattttgatt
8514
8533
1
3


 


SEQ ID NO: 2195
tgaccttcacataccagaa
8312
8331
SEQ ID NO: 2501
ttcttctggaaaagggtca
8876
8895
1
3


 


SEQ ID NO: 2196
ttccagcttccccacatct
8331
8350
SEQ ID NO: 2502
agattctcagatgagggaa
8913
8932
1
3


 


SEQ ID NO: 2197
aagctatacagtattctga
8379
8398
SEQ ID NO: 2503
tcagatggcattgctgctt
11604
11623
1
3


 


SEQ ID NO: 2198
attctgaaaatccaatctc
8391
8410
SEQ ID NO: 2504
gagataaccgtgcctgaat
11544
11563
1
3


 


SEQ ID NO: 2199
tttcacattagatgcaaat
8414
8433
SEQ ID NO: 2505
attttgaaaaaaacagaaa
9730
9749
1
3


 


SEQ ID NO: 2200
caaatgctgacatagggaa
8428
8447
SEQ ID NO: 2506
ttccatcacaaatcctttg
9662
9681
1
3


 


SEQ ID NO: 2201
gagagtccaaattagaagt
8500
8519
SEQ ID NO: 2507
actttacttcccaactctc
13402
13421
1
3


 


SEQ ID NO: 2202
agagtccaaattagaagtt
8501
8520
SEQ ID NO: 2508
aactttacttcccaactct
13401
13420
1
3


 


SEQ ID NO: 2203
tctcaattttgattttcaa
8519
8538
SEQ ID NO: 2509
ttgattcccttttttgaga
11529
11548
1
3


 


SEQ ID NO: 2204
caattttgattttcaagca
8522
8541
SEQ ID NO: 2510
tgctgaatccaaaagattg
13652
13671
1
3


 


SEQ ID NO: 2205
aatgcacaactctcaaacc
8541
8560
SEQ ID NO: 2511
ggtttatcaaggggccatt
12452
12471
1
3


 


SEQ ID NO: 2206
agttctccagcaagtacct
8596
8615
SEQ ID NO: 2512
aggttccatcgtgcaaact
11380
11399
1
3


 


SEQ ID NO: 2207
agtacctgagaacggagca
8608
8627
SEQ ID NO: 2513
tgctccaggagaacttact
13772
13791
1
3


 


SEQ ID NO: 2208
tcaaacacagtggcaagtt
8670
8689
SEQ ID NO: 2514
aactctcaagtcaagttga
13414
13433
1
3


 


SEQ ID NO: 2209
acaatcagcttaccctgga
8743
8762
SEQ ID NO: 2515
tccattctgaatatattgt
13372
13391
1
3


 


SEQ ID NO: 2210
ctggatagcaacactaaat
8757
8776
SEQ ID NO: 2516
attttctgaacttccccag
12694
12713
1
3


 


SEQ ID NO: 2211
ctgacctgcgcaacgagat
8821
8840
SEQ ID NO: 2517
atctgatgaggaaactcag
12251
12270
1
3


 


SEQ ID NO: 2212
agatgagggaacacatgaa
8921
8940
SEQ ID NO: 2518
ttcatgtccctagaaatct
10030
10049
1
3


 


SEQ ID NO: 2213
tcaacttttctaaacttga
9052
9071
SEQ ID NO: 2519
tcaaggataacgtgtttga
12610
12629
1
3


 


SEQ ID NO: 2214
ttctaaacttgaaattcaa
9059
9078
SEQ ID NO: 2520
ttgatgatgctgtcaagaa
7300
7319
1
3


 


SEQ ID NO: 2215
gaaattcaatcacaagtcg
9069
9088
SEQ ID NO: 2521
cgacgaagaaaataatttc
13558
13577
1
3


 


SEQ ID NO: 2216
cactgtttggagaagggaa
9133
9152
SEQ ID NO: 2522
ttccagaaagcagccagtg
12498
12517
1
3


 


SEQ ID NO: 2217
actgtttggagaagggaag
9134
9153
SEQ ID NO: 2523
cttccccaaagagaccagt
2890
2909
1
3


 


SEQ ID NO: 2218
aattctcttttcttttcag
9213
9232
SEQ ID NO: 2524
ctgattactatgaaaaatt
13630
13649
1
3


 


SEQ ID NO: 2219
ttcttttcagcccagccat
9222
9241
SEQ ID NO: 2525
atggaaaagggaaagagaa
13486
13505
1
3


 


SEQ ID NO: 2220
tttgaaagttcgttttcca
9275
9294
SEQ ID NO: 2526
tggaagtgtcagtggcaaa
10372
10391
1
3


 


SEQ ID NO: 2221
cagggaagataggcttcct
9304
9323
SEQ ID NO: 2527
aggacctttcaaattcctg
9840
9859
1
3


 


SEQ ID NO: 2222
ataagtacaaccaaaattt
9397
9416
SEQ ID NO: 2528
aaatcaggatctgagttat
14030
14049
1
3


 


SEQ ID NO: 2223
acaacgagaacattatgga
9427
9446
SEQ ID NO: 2529
tccattctgaatatattgt
13372
13391
1
3


 


SEQ ID NO: 2224
aggaataaatggagaagca
9455
9474
SEQ ID NO: 2530
tgctggaattgtcattcct
11726
11745
1
3


 


SEQ ID NO: 2225
agcaaatctggatttctta
9470
9489
SEQ ID NO: 2531
taagttctctgtacctgct
11711
11730
1
3


 


SEQ ID NO: 2226
tcctttaacaattcctgaa
9494
9513
SEQ ID NO: 2532
ttcaaaacgagcttcagga
13198
13217
1
3


 


SEQ ID NO: 2227
tttaacaattcctgaaatg
9497
9516
SEQ ID NO: 2533
catttgatttaagtgtaaa
9613
9632
1
3


 


SEQ ID NO: 2228
acacaataatcacaactcc
9526
9545
SEQ ID NO: 2534
ggagacagcatcttcgtgt
11203
11222
1
3


 


SEQ ID NO: 2229
aagatttctctctatggga
9553
9572
SEQ ID NO: 2535
tcccagaaaacctcttctt
3928
3947
1
3


 


SEQ ID NO: 2230
gaaaaaacaggcttgaagg
9570
9589
SEQ ID NO: 2536
ccttttacaattcattttc
13013
13032
1
3


 


SEQ ID NO: 2231
ttgaaggaattcttgaaaa
9582
9601
SEQ ID NO: 2537
ttttgagaatgaatttcaa
10414
10433
1
3


 


SEQ ID NO: 2232
tgaaggaattcttgaaaac
9583
9602
SEQ ID NO: 2538
gttttggctgataaattca
11283
11302
1
3


 


SEQ ID NO: 2233
agctcagtataagaaaaac
9632
9651
SEQ ID NO: 2539
gtttgataagtacaaagct
9797
9816
1
3


 


SEQ ID NO: 2234
tcaaatcctttgacaggca
9712
9731
SEQ ID NO: 2540
tgcctgagcagaccattga
11680
11699
1
3


 


SEQ ID NO: 2235
atgaaacaaaaattaagtt
9781
9800
SEQ ID NO: 2541
aactttgcactatgttcat
12754
12773
1
3


 


SEQ ID NO: 2236
aattcctggatacactgtt
9851
9870
SEQ ID NO: 2542
aacacatgaatcacaaatt
8930
8949
1
3


 


SEQ ID NO: 2237
ttccagttgtcaatgttga
9868
9887
SEQ ID NO: 2543
tcaaaacgagcttcaggaa
13199
13218
1
3


 


SEQ ID NO: 2238
aagtgtctccattcaccat
9886
9905
SEQ ID NO: 2544
atgggaagtataagaactt
4834
4853
1
3


 


SEQ ID NO: 2239
gtcagcatgcctagtttct
9942
9961
SEQ ID NO: 2545
agaaaaggcacaccttgac
11072
11091
1
3


 


SEQ ID NO: 2240
ctgccatgggcaatattac
10105
10124
SEQ ID NO: 2546
gtaagaaaatacagagcag
6432
6451
1
3


 


SEQ ID NO: 2241
tgaataccaatgctgaact
10159
10178
SEQ ID NO: 2547
agttgaaggagactattca
7216
7235
1
3


 


SEQ ID NO: 2242
tattgttgctcatctcctt
10193
10212
SEQ ID NO: 2548
aaggaaacataaactaata
12881
12900
1
3


 


SEQ ID NO: 2243
tgttgctcatctcctttct
10196
10215
SEQ ID NO: 2549
agaagaaatctgcagaaca
12423
12442
1
3


 


SEQ ID NO: 2244
tctgtcattgatgcactgc
10224
10243
SEQ ID NO: 2550
gcagtagactataagcaga
13920
13939
1
3


 


SEQ ID NO: 2245
ccacagctctgtctctgag
10297
10316
SEQ ID NO: 2551
ctcagggatctgaaggtgg
8187
8206
1
3


 


SEQ ID NO: 2246
atttgtggagggtagtcat
10322
10341
SEQ ID NO: 2552
atgaagtagaccaacaaat
7153
7172
1
3


 


SEQ ID NO: 2247
atatggaagtgtcagtggc
10369
10388
SEQ ID NO: 2553
gccacactccaacgcatat
10770
10789
1
3


 


SEQ ID NO: 2248
tggaaataccaagtcaaaa
10445
10464
SEQ ID NO: 2554
ttttacaattcattttcca
13015
13034
1
3


 


SEQ ID NO: 2249
aagtcaaaacctactgtct
10455
10474
SEQ ID NO: 2555
agacctagtgattacactt
12851
12870
1
3


 


SEQ ID NO: 2250
actgtctcttcctccatgg
10467
10486
SEQ ID NO: 2556
ccatgcaagtcagcccagt
10916
10935
1
3


 


SEQ ID NO: 2251
cttcctccatggaatttaa
10474
10493
SEQ ID NO: 2557
ttaatcgagaggtatgaag
7140
7159
1
3


 


SEQ ID NO: 2252
attcttcaatgctgtactc
10504
10523
SEQ ID NO: 2558
gagttgagggtccgggaat
12234
12253
1
3


 


SEQ ID NO: 2253
ttgaccacaagcftagctt
10540
10559
SEQ ID NO: 2559
aagcgcacctcaatatcaa
12028
12047
1
3


 


SEQ ID NO: 2254
cctcacctcttacttttcc
10565
10584
SEQ ID NO: 2560
ggaactattgctagtgagg
10641
10660
1
3


 


SEQ ID NO: 2255
agctgcagggcacttccaa
10702
10721
SEQ ID NO: 2561
ttgggaagaagaggcagct
12281
12300
1
3


 


SEQ ID NO: 2256
ttccaaaattgatgatatc
10715
10734
SEQ ID NO: 2582
gatatacactagggaggaa
12737
12756
1
3


 


SEQ ID NO: 2257
gagaacatacaagcaaagc
10852
10871
SEQ ID NO: 2563
gcttggttttgccagtctc
2459
2478
1
3


 


SEQ ID NO: 2258
atggcaaatgtcagctctt
10889
10908
SEQ ID NO: 2564
aagaggtatttaaagccat
12952
12971
1
3


 


SEQ ID NO: 2259
tggcaaatgtcagctcttg
10890
10909
SEQ ID NO: 2565
caagaggtatttaaagcca
12951
12970
1
3


 


SEQ ID NO: 2260
ttgttcaggtccatgcaag
10906
10925
SEQ ID NO: 2566
cttgggggaggaggaacaa
14058
14077
1
3


 


SEQ ID NO: 2261
tgttcaggtccatgcaagt
10907
10926
SEQ ID NO: 2557
acttgggggaggaggaaca
14057
14076
1
3


 


SEQ ID NO: 2262
agttccttccatgatttcc
10932
10951
SEQ ID NO: 2568
ggaatctgatgaggaaact
12248
12267
1
3


 


SEQ ID NO: 2263
tgctaacactaagaaccag
10979
10998
SEQ ID NO: 2569
ctggatgtaaccaccagca
11178
11197
1
3


 


SEQ ID NO: 2264
actaagaaccagaagatca
10986
11005
SEQ ID NO: 2570
tgatcaagaacctgttagt
13339
13358
1
3


 


SEQ ID NO: 2265
ctaagaaccagaagatcag
10987
11006
SEQ ID NO: 2571
ctgatcaagaacctgttag
13338
13357
1
3


 


SEQ ID NO: 2266
cagaagatcagatggaaaa
10995
11014
SEQ ID NO: 2572
ttttcagaccaactctctg
13614
13633
1
3


 


SEQ ID NO: 2267
aaaaatgaagtccggattc
11010
11029
SEQ ID NO: 2573
gaatttgaaagttcgtttt
9272
9291
1
3


 


SEQ ID NO: 2268
gattcattctgggtctttc
11024
11043
SEQ ID NO: 2574
gaaaacctatgccttaatc
13158
13177
1
3


 


SEQ ID NO: 2269
aagaaaaggcacaccttga
11071
11090
SEQ ID NO: 2575
tcaaaacctactgtctctt
10458
10477
1
3


 


SEQ ID NO: 2270
aaggacacctaaggttcct
11107
11126
SEQ ID NO: 2576
aggacaccaaaataacctt
7564
7583
1
3


 


SEQ ID NO: 2271
ccagcattggtaggagaca
11191
11210
SEQ ID NO: 2577
tgtcaacaagtaccactgg
12362
12381
1
3


 


SEQ ID NO: 2272
ctttgtgtacaccaaaaac
11231
11250
SEQ ID NO: 2578
gtttttaaattgttgaaag
13140
13159
1
3


 


SEQ ID NO: 2273
ccatccctgtaaaagtttt
11269
11288
SEQ ID NO: 2579
aaaagggtcatggaaatgg
8885
8904
1
3


 


SEQ ID NO: 2274
tgatctaaattcagttctt
11324
11343
SEQ ID NO: 2580
aagatagtcagtctgatca
13326
13345
1
3


 


SEQ ID NO: 2275
aagaagctgagaacttcat
11424
11443
SEQ ID NO: 2581
atgagatcaacacaatctt
13102
13121
1
3


 


SEQ ID NO: 2276
tttgccctcaacctaccaa
11445
11464
SEQ ID NO: 2582
ttggtacgagttactcaaa
12633
12652
1
3


 


SEQ ID NO: 2277
cttgattcccttttttgag
11528
11547
SEQ ID NO: 2583
ctcaattttgattttcaag
8520
8539
1
3


 


SEQ ID NO: 2278
ttcacgcttccaaaaagtg
11583
11602
SEQ ID NO: 2584
cactcattgattttctgaa
12685
12704
1
3


 


SEQ ID NO: 2279
tgtttcagatggcattgct
11600
11519
SEQ ID NO: 2585
agcagattatgttgaaaca
11825
11844
1
3


 


SEQ ID NO: 2280
aatgcagtagccaacaaga
11631
11650
SEQ ID NO: 2586
tcttttcagcccagccatt
9223
9242
1
3


 


SEQ ID NO: 2281
ctgagcagaccattgagat
11683
11702
SEQ ID NO: 2587
atctgatgaggaaactcag
12251
12270
1
3


 


SEQ ID NO: 2282
tgagcagaccattgagatt
11684
11703
SEQ ID NO: 2588
aatctgatgaggaaactca
12250
12269
1
3


 


SEQ ID NO: 2283
ttgagattccctccattaa
11695
11714
SEQ ID NO: 2589
ttaatcttcataagttcaa
13171
13190
1
3


 


SEQ ID NO: 2284
acttggagtgccagtttga
11799
11818
SEQ ID NO: 2590
tcaattgggagagacaagt
6496
6515
1
3


 


SEQ ID NO: 2285
caaatttgaaggacttcag
11996
12015
SEQ ID NO: 2591
ctgagaacttcatcatttg
11430
11449
1
3


 


SEQ ID NO: 2286
agcccagcgttcaccgatc
12048
12067
SEQ ID NO: 2592
gatccaagtatagttggct
13278
13297
1
3


 


SEQ ID NO: 2287
cagcgttcaccgatctcca
12052
12071
SEQ ID NO: 2593
tggacctgcaccaaagctg
13952
13971
1
3


 


SEQ ID NO: 2288
ctccatctgcgctaccaga
12066
12085
SEQ ID NO: 2594
tctgatatacatcacggag
13703
13722
1
3


 


SEQ ID NO: 2289
atgaggaaactcagatcaa
12256
12275
SEQ ID NO: 2595
ttgagttgcccaccatcat
11659
11678
1
3


 


SEQ ID NO: 2290
aggcagcttctggcttgct
12292
12311
SEQ ID NO: 2596
agcaagtctttcctggcct
3010
3029
1
3


 


SEQ ID NO: 2291
tgaaagacaacgtgcccaa
12319
12338
SEQ ID NO: 2597
ttgggagagacaagtttca
6500
6519
1
3


 


SEQ ID NO: 2292
tatgattatgtcaacaagt
12354
12373
SEQ ID NO: 2598
actttgcactatgttcata
12755
12774
1
3


 


SEQ ID NO: 2293
cattaggcaaattgatgat
12467
12486
SEQ ID NO: 2599
atcaacacaatcttcaatg
13107
13126
1
3


 


SEQ ID NO: 2294
ttgactcaggaaggccaag
12576
12595
SEQ ID NO: 2600
cttggtacgagttactcaa
12632
12651
1
3


 


SEQ ID NO: 2295
gaaacctgggatatacact
12728
12747
SEQ ID NO: 2601
agtgattacacttcctttc
12857
12876
1
3


 


SEQ ID NO: 2296
tcctttcgagttaaggaaa
12869
12888
SEQ ID NO: 2602
tttctgccactgctcagga
13516
13535
1
3


 


SEQ ID NO: 2297
gccattcagtctctcaaga
12966
12985
SEQ ID NO: 2603
tcttccgttctgtaatggc
5794
5813
1
3


 


SEQ ID NO: 2298
gtgctacgtaatcttcagg
12993
13012
SEQ ID NO: 2604
cctgcaccaaagctggcac
13956
13975
1
3


 


SEQ ID NO: 2299
agctgaaagagatgaaatt
13057
13076
SEQ ID NO: 2605
aatttattcaaaacgagct
13192
13211
1
3


 


SEQ ID NO: 2300
aatttacttatcttattaa
13072
13091
SEQ ID NO: 2606
ttaaaagaaatcttcaatt
13807
13826
1
3


 


SEQ ID NO: 2301
ttttaaattgttgaaagaa
13142
13161
SEQ ID NO: 2607
ttctctctatgggaaaaaa
9558
9577
1
3


 


SEQ ID NO: 2302
taatcttcataagttcaat
13172
13191
SEQ ID NO: 2608
attgagattccctccatta
11694
11713
1
3


 


SEQ ID NO: 2303
atattttgatccaagtata
13271
13290
SEQ ID NO: 2609
tataagcagaagcacatat
13929
13948
1
3


 


SEQ ID NO: 2304
tgaaatattatgaacttga
13303
13322
SEQ ID NO: 2610
tcaaccttaatgattttca
8287
8306
1
3


 


SEQ ID NO: 2305
caatttctgcacagaaata
13434
13453
SEQ ID NO: 2611
tattcttcttttccaattg
13826
13845
1
3


 


SEQ ID NO: 2306
agaagattgcagagctttc
13501
13520
SEQ ID NO: 2612
gaaatcttcaatttattct
13813
13832
1
3


 


SEQ ID NO: 2307
gaagaaaataatttctgat
13562
13581
SEQ ID NO: 2613
atcagttcagataaacttc
7991
8010
1
3


 


SEQ ID NO: 2308
ttgacctgtccattcaaaa
13672
13691
SEQ ID NO: 2614
ttttgagaatgaatttcaa
10414
10433
1
3


 


SEQ ID NO: 2309
tcaaaactaccacacattt
13685
13704
SEQ ID NO: 2615
aaattccttgacatgttga
7362
7381
1
3


 


SEQ ID NO: 2310
ttttttaaaagaaatcttc
13803
13822
SEQ ID NO: 2616
gaagtgtcagtggcaaaaa
10374
10393
1
3


 


SEQ ID NO: 2311
aggatctgagttattttgc
14035
14054
SEQ ID NO: 2617
gcaagggttcactgttcct
7856
7875
1
3


 


SEQ ID NO: 2312
tttgctaaacttgggggag
14049
14068
SEQ ID NO: 2618
ctccccaggacctttcaaa
9834
9853
1
3


 





# = Match Number B = Middle Matching Bases













TABLE 9 







Selected palindromic sequences from human ApoB


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B




















SEQ ID NO: 2619
ggccattccagaagggaag
517
536
SEQ ID NO: 3948
cttccgttctgtaatggcc
5803
5822
1
9


 


SEQ ID NO: 2620
tgccatctcgagagttcca
4107
4162
SEQ ID NO: 3949
tggaactctctccatggca
10884
10903
1
8


 


SEQ ID NO: 2621
catgtcaaacactttgtta
7064
7083
SEQ ID NO: 3950
taacaaattccttgacatg
7366
7385
1
8


 


SEQ ID NO: 2622
tttgttataaatcttattg
7076
7095
SEQ ID NO: 3951
caataagatcaatagcaaa
8998
9017
1
8


 


SEQ ID NO: 2623
tctggaaaagggtcatgga
8888
8907
SEQ ID NO: 3959
tccatgtcccatttacaga
11364
11383
1
8


 


SEQ ID NO: 2624
cagctcttgttcaggtcca
10908
10927
SEQ ID NO: 3960
tggacctgcaccaaagctg
13980
13979
1
8


 


SEQ ID NO: 2625
ggaggttccccagctctgc
364
383
SEQ ID NO: 3961
gcagccctgggaaaactcc
6455
6474
1
7


 


SEQ ID NO: 2626
ctgttttgaagactctcca
1089
1108
SEQ ID NO: 3962
tggagggtagtcataacag
10335
10354
1
7


 


SEQ ID NO: 2627
agtggctgaaacgtgtgca
1305
1324
SEQ ID NO: 3963
tgcagagctttctgccact
13516
13535
1
7


 


SEQ ID NO: 2628
ccaaaatagaagggaatct
2076
2095
SEQ ID NO: 3964
agattcctttgccttttgg
4008
4027
1
7


 


SEQ ID NO: 2629
tgaagagaagattgaattt
3628
3647
SEQ ID NO: 3965
aaattctcttttcttttca
9220
9239
1
7


 


SEQ ID NO: 2630
agtggtggcaacaccagca
4238
4257
SEQ ID NO: 3966
tgctagtgaggccaacact
10857
10676
1
7


 


SEQ ID NO: 2631
aaggctccacaagtcatca
5958
5977
SEQ ID NO: 3967
tgatgatatctggaacctt
10732
10751
1
7


 


SEQ ID NO: 2632
gtcagccaggtttatagca
7733
7752
SEQ ID NO: 3968
tgctaagaaccttactgac
7789
7808
1
7


 


SEQ ID NO: 2633
tgatatctggaaccttgaa
10735
10754
SEQ ID NO: 3969
ttcactgttcctgaaatca
7871
7890
1
7


 


SEQ ID NO: 2634
gtcaagttgagcaatttct
13431
13450
SEQ ID NO: 3970
agaaaaggcacaccttgac
11080
11099
1
7


 


SEQ ID NO: 2635
atccagatggaaaagggaa
13488
13507
SEQ ID NO: 3971
ttccaatttccctgtggat
3688
3707
1
7


 


SEQ ID NO: 2636
atttgtttgtcaaagaagt
4551
4570
SEQ ID NO: 3972
acttcagagaaatacaaat
11409
11428
4
6


 


SEQ ID NO: 2637
ctggaaaatgtcagcctgg
212
231
SEQ ID NO: 3973
ccagacttccgtttaccag
8243
8262
2
6


 


SEQ ID NO: 2638
accaggaggttcttcttca
1737
1756
SEQ ID NO: 3974
tgaagtgtagtctcctggt
5097
5116
2
6


 


SEQ ID NO: 2639
aaagaagttctgaaagaat
1964
1983
SEQ ID NO: 3975
attccatcacaaatccttt
9669
9688
2
6


 


SEQ ID NO: 2640
gctacagcttatggctcca
3578
3597
SEQ ID NO: 3976
tggatctaaatgcagtagc
11631
11650
2
6


 


SEQ ID NO: 2641
atcaatattgatcaatttg
6422
6441
SEQ ID NO: 3977
caaagaagtcaagattgat
4561
4580
2
6


 


SEQ ID NO: 2642
gaattatcttttaaaacat
7334
7353
SEQ ID NO: 3978
atgtgttaacaaaatattc
11602
11521
2
6


 


SEQ ID NO: 2643
cgaggcccgcgctgctggc
138
157
SEQ ID NO: 3979
gccagaagtgagatcctcg
3515
3534
1
6


 


SEQ ID NO: 2644
acaactatgaggctgagag
279
298
SEQ ID NO: 3980
ctctgagcaacaaatttgt
10317
10336
1
6


 


SEQ ID NO: 2645
gctgagagttccagtggag
290
309
SEQ ID NO: 3981
ctccatggcaaatgtcagc
10893
10912
1
6


 


SEQ ID NO: 2646
tgaagaaaaccaagaactc
456
475
SEQ ID NO: 3982
gagtcattgaggttcttca
4937
4956
1
6


 


SEQ ID NO: 2647
cctacttacatcctgaaca
566
585
SEQ ID NO: 3983
tgttcataagggaggtagg
12774
12793
1
6


 


SEQ ID NO: 2648
ctacttacatcctgaacat
567
586
SEQ ID NO: 3984
atgttcataagggaggtag
12773
12792
1
6


 


SEQ ID NO: 2649
gagacagaagaagccaagc
623
642
SEQ ID NO: 3985
gcttggttttgccagtctc
2467
2486
1
6


 


SEQ ID NO: 2650
cactcactttaccgtcaag
679
698
SEQ ID NO: 3986
cttgaacacaaagtcagtg
6008
6027
1
6


 


SEQ ID NO: 2651
ctgatcagcagcagccagt
830
649
SEQ ID NO: 3987
actgggaagtgcttatcag
5245
5264
1
6


 


SEQ ID NO: 2652
actggacgctaagaggaag
862
881
SEQ ID NO: 3988
cttccccaaagagaccagt
2898
2917
1
6


 


SEQ ID NO: 2653
agaggaagcatgtggcaga
873
892
SEQ ID NO: 3989
tctggcatttactttctct
5929
5948
1
6


 


SEQ ID NO: 2654
tgaagactctccaggaact
1095
1114
SEQ ID NO: 3990
agttgaaggagactattca
7224
7243
1
6


 


SEQ ID NO: 2655
ctctgagcaaaatatccag
1129
1148
SEQ ID NO: 3991
ctggttactgagctgagag
1169
1188
1
6


 


SEQ ID NO: 2656
atgaagcagtcacatctct
1197
1216
SEQ ID NO: 3992
agagctgccagtccttcat
10024
10043
1
6


 


SEQ ID NO: 2657
ttgccacagctgattgagg
1217
1236
SEQ ID NO: 3993
cctcctacagtggtggcaa
4230
4249
1
6


 


SEQ ID NO: 2658
agctgattgaggtgtccag
1224
1243
SEQ ID NO: 3994
ctggattccacatgcagct
11855
11874
1
6


 


SEQ ID NO: 2659
tgctccactcacatcctcc
1286
1305
SEQ ID NO: 3995
ggaggctttaagttcagca
7609
7628
1
6


 


SEQ ID NO: 2660
tgaaacgtgtgcatgccaa
1311
1330
SEQ ID NO: 3996
ttgggagagacaagtttca
6508
6527
1
6


 


SEQ ID NO: 2661
gacattgctaattacctga
1511
1530
SEQ ID NO: 3997
tcagaagctaagcaatgtc
7240
7259
1
6


 


SEQ ID NO: 2662
ttcttcttcagactttcct
1746
1765
SEQ ID NO: 3998
aggagagtccaaattagaa
8506
8525
1
6


 


SEQ ID NO: 2663
ccaatatcttgaactcaga
1911
1930
SEQ ID NO: 3999
tctgaattcattcaattgg
6493
6512
1
6


 


SEQ ID NO: 2664
aaagttagtgaaagaagtt
1954
1973
SEQ ID NO: 4000
aactaccctcactgccttt
2140
2159
1
6


 


SEQ ID NO: 2665
aagttagtgaaagaagttc
1955
1974
SEQ ID NO: 4001
gaacctctggcatttactt
5924
5943
1
6


 


SEQ ID NO: 2666
aaagaagttctgaaagaat
1964
1983
SEQ ID NO: 4002
attctctggtaactacttt
5490
5509
1
6


 


SEQ ID NO: 2667
tttggctataccaaagatg
2330
2349
SEQ ID NO: 4003
catcttaggcactgacaaa
5005
5024
1
6


 


SEQ ID NO: 2668
tgttgagaagctgattaaa
2389
2408
SEQ ID NO: 4004
tttagccatcggctcaaca
5708
5727
1
6


 


SEQ ID NO: 2669
caggaagggctcaaagaat
2569
2588
SEQ ID NO: 4005
attcctttaacaattcctg
9500
9519
1
6


 


SEQ ID NO: 2670
aggaagggctcaaagaatg
2570
2589
SEQ ID NO: 4006
cattcctttaacaattcct
9499
9518
1
6


 


SEQ ID NO: 2671
gaagggctcaaagaatgac
2572
2591
SEQ ID NO: 4007
gtcagtcttcaggctcttc
7922
7941
1
6


 


SEQ ID NO: 2672
caaagaatgacttttttct
2580
2599
SEQ ID NO: 4008
agaaggatggcattttttg
14008
14027
1
6


 


SEQ ID NO: 2673
catggagaatgcctttgaa
2611
2630
SEQ ID NO: 4009
ttcagagccaaagtccatg
7127
7146
1
6


 


SEQ ID NO: 2674
ggagccaaggctggagtaa
2687
2706
SEQ ID NO: 4010
ttactccaacgccagctcc
3058
3077
1
6


 


SEQ ID NO: 2675
tcattccttccccaaagag
2892
2911
SEQ ID NO: 4011
ctctctggggcatctatga
5147
5166
1
6


 


SEQ ID NO: 2676
acctatgagctccagagag
3173
3192
SEQ ID NO: 4012
ctctcaagaccacagaggt
12984
13003
1
6


 


SEQ ID NO: 2677
gggcaaaacgtcttacaga
3373
3392
SEQ ID NO: 4013
tctgaaagacaacgtgccc
12325
12344
1
6


 


SEQ ID NO: 2678
accctggacattcagaaca
3395
3414
SEQ ID NO: 4014
tgttgctaaggttcagggt
5683
5702
1
6


 


SEQ ID NO: 2679
atgggcgacctaagttgtg
3437
3456
SEQ ID NO: 4015
cacaaattagtttcaccat
8949
8968
1
6


 


SEQ ID NO: 2680
gatgaagagaagattgaat
3826
3645
SEQ ID NO: 4016
attccagcttccccacatc
8338
8357
1
6


 


SEQ ID NO: 2681
caatgtagataccaaaaaa
3664
3683
SEQ ID NO: 4017
ttttttggaaatgccattg
8651
8670
1
6


 


SEQ ID NO: 2682
gtagataccaaaaaaatga
3668
3687
SEQ ID NO: 4018
tcatgtgatgggtctctac
4379
4398
1
6


 


SEQ ID NO: 2683
gcttcagttcatttggact
4517
4536
SEQ ID NO: 4019
agtcaagaaggacttaagc
5312
5331
1
6


 


SEQ ID NO: 2684
tttgtttgtcaaagaagtc
4552
4571
SEQ ID NO: 4020
gacttcagagaaatacaaa
11408
11427
1
6


 


SEQ ID NO: 2685
ttgtttgtcaaagaagtca
4553
4572
SEQ ID NO: 4021
tgacttcagagaaatacaa
11407
11428
1
6


 


SEQ ID NO: 2686
tggcaatgggaaactcgct
5854
5873
SEQ ID NO: 4022
agcgagaatcaccctgcca
8227
8246
1
6


 


SEQ ID NO: 2687
aacctctggcatttacttt
5925
5944
SEQ ID NO: 4023
aaaggagatgtcaagggtt
10607
10626
1
6


 


SEQ ID NO: 2688
catttactttctctcatga
5934
5953
SEQ ID NO: 4024
tcatttgaaagaataaatg
7034
7053
1
6


 


SEQ ID NO: 2689
aaagtcagtgccctgctta
6017
6036
SEQ ID NO: 4025
taagaaccttactgacttt
7792
7811
1
6


 


SEQ ID NO: 2690
tcccattttttgagacctt
6330
6349
SEQ ID NO: 4026
aaggacttcaggaatggga
12012
12031
1
6


 


SEQ ID NO: 2691
catcaatattgatcaattt
6421
6440
SEQ ID NO: 4027
aaattaaaaagtcttgatg
6740
6759
1
6


 


SEQ ID NO: 2692
taaagatagttatgattta
6673
6692
SEQ ID NO: 4028
taaaccaaaacttggttta
9027
9046
1
6


 


SEQ ID NO: 2693
tattgatgaaatcattgaa
6721
6740
SEQ ID NO: 4029
ttcaaagacttaaaaaata
8015
8034
1
6


 


SEQ ID NO: 2694
atgatctacatttgtttat
6798
6817
SEQ ID NO: 4030
ataaagaaattaaagtcat
7388
7407
1
6


 


SEQ ID NO: 2695
agagacacatacagaatat
6927
6946
SEQ ID NO: 4031
atatattgtcagtgcctct
13390
13409
1
6


 


SEQ ID NO: 2696
gacacatacagaatataga
6930
6949
SEQ ID NO: 4032
tctaaattcagttcttgtc
11335
11354
1
6


 


SEQ ID NO: 2697
agcatgtcaaacactttgt
7062
7081
SEQ ID NO: 4033
acaaagtcagtgccctgct
6015
6034
1
6


 


SEQ ID NO: 2698
tttttagaggaaaccaagg
7523
7542
SEQ ID NO: 4034
cctttgtgtacaccaaaaa
11238
11257
1
6


 


SEQ ID NO: 2599
ttttagaggaaaccaaggc
7524
7543
SEQ ID NO: 4035
gcctttgtgtacaccaaaa
11237
11256
1
6


 


SEQ ID NO: 2700
ggaagatagacttcctgaa
9315
9334
SEQ ID NO: 4036
ttcagaaatactgttttcc
12832
12851
1
6


 


SEQ ID NO: 2701
cactgtttctgagtcccag
9342
9361
SEQ ID NO: 4037
ctgggacctaccaagagtg
12531
12550
1
6


 


SEQ ID NO: 2702
cacaaatcctttggctgtg
9676
9695
SEQ ID NO: 4038
cacatttcaaggaattgtg
10071
10090
1
6


 


SEQ ID NO: 2703
ttcctggatacactgttcc
9861
9880
SEQ ID NO: 4039
ggaactgttgactcaggaa
12577
12596
1
6


 


SEQ ID NO: 2704
gaaatctcaagctttctct
10050
10069
SEQ ID NO: 4040
agagccaggtcgagctttc
11052
11071
1
6


 


SEQ ID NO: 2705
tttcttcatcttcatctgt
10218
10237
SEQ ID NO: 4041
acagctgaaagagatgaaa
13063
13082
1
6


 


SEQ ID NO: 2706
tctaccgctaaaggagcag
10529
10548
SEQ ID NO: 4042
ctgcacgctttgaggtaga
11769
11788
1
6


 


SEQ ID NO: 2707
ctaccgctaaaggagcagt
10530
10549
SEQ ID NO: 4043
actgcacgctttgaggtag
11768
11787
1
6


 


SEQ ID NO: 2708
agggcctctttttcaccaa
10839
10858
SEQ ID NO: 4044
ttggccaggaagtggccct
10965
10984
1
6


 


SEQ ID NO: 2709
ttctccatccctgtaaaag
11273
11292
SEQ ID NO: 4045
cttttcaccaacggagaa
10846
10865
1
6


 


SEQ ID NO: 2710
gaaaaacaaagcagattat
11824
11843
SEQ ID NO: 4046
ataaactgcaagatttttc
13608
13627
1
6


 


SEQ ID NO: 2711
actcactcattgattttct
12690
12709
SEQ ID NO: 4047
agaaaatcaggatctgagt
14035
14054
1
6


 


SEQ ID NO: 2712
taaactaatagatgtaatc
12898
12917
SEQ ID NO: 4048
gattaccaccagcagttta
13586
13605
1
6


 


SEQ ID NO: 2713
caaaacgagcttcaggaag
13208
13227
SEQ ID NO: 4049
cttcgtgaagaatattttg
13268
13287
1
6


 


SEQ ID NO: 2714
tggaataatgctcagtgtt
2374
2393
SEQ ID NO: 4050
aacacttacttgaattcca
10670
10689
3
5


 


SEQ ID NO: 2715
gatttgaaatccaaagaag
2408
2427
SEQ ID NO: 4051
cttcagagaaatacaaatc
11410
11429
3
5


 


SEQ ID NO: 2716
atttgaaatccaaagaagt
2409
2428
SEQ ID NO: 4052
acttcagagaaatacaaat
11409
11428
3
5


 


SEQ ID NO: 2717
atcaacagccgcttctttg
998
1017
SEQ ID NO: 4053
caaagaagtcaagattgat
4561
4580
2
5


 


SEQ ID NO: 2718
tgttttgaagactctccag
1090
1109
SEQ ID NO: 4054
ctggaaagttaaaacaaca
6963
6982
2
5


 


SEQ ID NO: 2719
cccttctgatagatgtggt
1332
1351
SEQ ID NO: 4055
accaaagctggcaccaggg
13969
13988
2
5


 


SEQ ID NO: 2720
tgagcaagtgaagaacttt
1876
1895
SEQ ID NO: 4056
aaagccattcagtctctca
12971
12990
2
5


 


SEQ ID NO: 2721
atttgaaatccaaagaagt
2409
2428
SEQ ID NO: 4057
acttttctaaacttgaaat
9063
9082
2
5


 


SEQ ID NO: 2722
atccaaagaagtcccggaa
2416
2435
SEQ ID NO: 4058
ttccggggaaacctgggat
12729
12748
2
5


 


SEQ ID NO: 2723
agagcctacctccgcatct
2438
2457
SEQ ID NO: 4059
agatggtacgttagcctct
11929
11948
2
5


 


SEQ ID NO: 2724
aatgcctttgaactcccca
2618
2837
SEQ ID NO: 4060
tgggaactacaatttcatt
7020
7039
2
5


 


SEQ ID NO: 2725
gaagtccaaattccggatt
3305
3324
SEQ ID NO: 4061
aatcttcaatttattcttc
13823
13842
2
5


 


SEQ ID NO: 2726
tgcaagcagaagccagaag
3504
3523
SEQ ID NO: 4062
cttcaggttccatcgtgca
11384
11403
2
5


 


SEQ ID NO: 2727
gaagagaagattgaatttg
3629
3648
SEQ ID NO: 4063
caaaacctactgtctcttc
10467
10486
2
5


 


SEQ ID NO: 2728
atgctaaaggcacatatgg
4605
4624
SEQ ID NO: 4064
ccatatgaaagtcaagcat
12664
12683
2
5


 


SEQ ID NO: 2729
tccctcacctccacctctg
4745
4764
SEQ ID NO: 4065
cagattctcagatgaggga
8920
8939
2
5


 


SEQ ID NO: 2730
atttacagctctgacaagt
5435
5454
SEQ ID NO: 4066
acttttctaaacttgaaat
9063
9082
2
5


 


SEQ ID NO: 2731
aggagcctaccaaaataat
5602
5521
SEQ ID NO: 4067
attatgttgaaacagtcct
11838
11857
2
5


 


SEQ ID NO: 2732
aaagctgaagcacatcaat
6409
6428
SEQ ID NO: 4068
attgttgctcatctccttt
10202
10221
2
5


 


SEQ ID NO: 2733
ctgctggaaacaacgagaa
9426
9445
SEQ ID NO: 4069
ttctgattaccaccagcag
13582
13601
2
5


 


SEQ ID NO: 2734
ttgaaggaattcttgaaaa
9590
9609
SEQ ID NO: 4070
ttttaaaagaaatcttcaa
13813
13832
2
5


 


SEQ ID NO: 2735
gaagtaaaagaaaattttg
10751
10770
SEQ ID NO: 4071
caaaacctactgtctcttc
10467
10486
2
5


 


SEQ ID NO: 2736
tgaagaagatggcaaattt
11992
12011
SEQ ID NO: 4072
aaatgtcagctcttgttca
10902
10921
2
5


 


SEQ ID NO: 2737
aggatctgagttattttgc
14043
14062
SEQ ID NO: 4073
gcaagtcagcccagttcct
10928
10947
2
5


 


SEQ ID NO: 2738
gtgcccttctcggttgctg
26
45
SEQ ID NO: 4074
cagccattgacatgagcac
5748
5767
1
5


 


SEQ ID NO: 2739
ggcgctgcctgcgctgctg
154
173
SEQ ID NO: 4075
cagctccacagactccgcc
3070
3089
1
5


 


SEQ ID NO: 2740
ctgcgctgctgctgctgct
162
181
SEQ ID NO: 4076
agcagaaggtgcgaagcag
3232
3251
1
5


 


SEQ ID NO: 2741
gctgctggcgggcgccagg
178
197
SEQ ID NO: 4077
cctggattccacatgcagc
11854
11873
1
5


 


SEQ ID NO: 2742
aagaggaaatgctggaaaa
201
220
SEQ ID NO: 4078
tttttcttcactacatctt
2592
2611
1
5


 


SEQ ID NO: 2743
ctggaaaatgtcagcctgg
212
231
SEQ ID NO: 4079
ccagacttccacatcccag
3923
3942
1
5


 


SEQ ID NO: 2744
tggagtccctgggactgct
304
323
SEQ ID NO: 4080
agcatgcctagtttctcca
9953
9972
1
5


 


SEQ ID NO: 2745
ggagtccctgggactgctg
305
324
SEQ ID NO: 4081
cagcatgcctagtttctcc
9952
9971
1
5


 


SEQ ID NO: 2746
tgggactgctgattcaaga
313
332
SEQ ID NO: 4082
tcttccatcacttgaccca
2050
2069
1
5


 


SEQ ID NO: 2747
ctgctgattcaagaagtgc
318
337
SEQ ID NO: 4083
gcacaccttgacattgcag
11087
11106
1
5


 


SEQ ID NO: 2748
tgccaccaggatcaactgc
334
353
SEQ ID NO: 4084
gcaggctgaactggtggca
2725
2744
1
5


 


SEQ ID NO: 2749
gccaccaggatcaactgca
335
354
SEQ ID NO: 4085
tgcaggctgaactggtggc
2724
2743
1
5


 


SEQ ID NO: 2750
tgcaaggttgagctggagg
350
369
SEQ ID NO: 4086
cctccacctctgatctgca
4752
4771
1
5


 


SEQ ID NO: 2751
caaggttgagctggaggtt
352
371
SEQ ID NO: 4089
aacccctacatgaagcttg
13763
13782
1
5


 


SEQ ID NO: 2752
ctctgcagcttcatcctga
377
396
SEQ ID NO: 4090
tcaggaagcttctcaagag
13219
13238
1
5


 


SEQ ID NO: 2753
cagcttcatcctgaagccc
382
401
SEQ ID NO: 4091
ggtcttgagttaaatgctg
4985
5004
1
5


 


SEQ ID NO: 2754
gcttcatcctgaagaccag
384
403
SEQ ID NO: 4092
ctggacgctaagaggaagc
863
882
1
5


 


SEQ ID NO: 2755
tcatcctgaagaccagcca
387
406
SEQ ID NO: 4093
tggcatggcattatgatga
3612
3631
1
5


 


SEQ ID NO: 2756
gaaaaccaagaactctgag
460
479
SEQ ID NO: 4094
ctcaaccttaatgattttc
8294
8313
1
5


 


SEQ ID NO: 2757
agaactctgaggagtttgc
468
487
SEQ ID NO: 4095
gcaagctatacagtattct
8385
8404
1
5


 


SEQ ID NO: 2758
tctgaggagtttgctgcag
473
492
SEQ ID NO: 4096
ctgcaggggatcccccaga
2534
2553
1
5


 


SEQ ID NO: 2759
tttgctgcagccatgtcca
482
501
SEQ ID NO: 4097
tggaagtgtcagtggcaaa
10380
10399
1
5


 


SEQ ID NO: 2760
caagaggggcatcatttct
586
605
SEQ ID NO: 4098
agaataaatgacgttcttg
7043
7062
1
5


 


SEQ ID NO: 2761
tcactttaccgtcaagacg
682
701
SEQ ID NO: 4099
cgtctacactatcatgtga
4368
4387
1
5


 


SEQ ID NO: 2762
tttaccgtcaagacgagga
686
705
SEQ ID NO: 4100
tccttgacatgttgataaa
7374
7393
1
5


 


SEQ ID NO: 2763
cactggacgctaagaggaa
861
880
SEQ ID NO: 4101
ttccagaaagcagccagtg
12506
12525
1
5


 


SEQ ID NO: 2764
aggaagcatgtggcagaag
875
894
SEQ ID NO: 4102
cttcatacacattaatcct
9996
10015
1
5


 


SEQ ID NO: 2765
caaggagcaacacctcttc
901
920
SEQ ID NO: 4103
gaagtagtactgcatcttg
6843
6862
1
5


 


SEQ ID NO: 2766
acagactttgaaacttgaa
967
986
SEQ ID NO: 4104
ttcaattcttcaatgctgt
10508
10527
1
5


 


SEQ ID NO: 2767
tgatgaagcagtcacatct
1195
1214
SEQ ID NO: 4105
agatttgaggattccatca
7984
8003
1
5


 


SEQ ID NO: 2768
agcagtcacatctctcttg
1201
1220
SEQ ID NO: 4106
caaggagaaactgactgct
6532
6551
1
5


 


SEQ ID NO: 2769
ccagccccatcactttaca
1239
1258
SEQ ID NO: 4107
tgtagtctcctggtgctgg
5102
5121
1
5


 


SEQ ID NO: 2770
ctccactcacatcctccag
1288
1307
SEQ ID NO: 4108
atggagcttagtaatggag
8717
8736
1
5


 


SEQ ID NO: 2771
catgccaacccccttctga
1322
1341
SEQ ID NO: 4109
tcagatgagggaacacatg
8927
8946
1
5


 


SEQ ID NO: 2772
gagagatcttcaacatggc
1398
1417
SEQ ID NO: 4110
gccaccctggaactctctc
10877
10898
1
5


 


SEQ ID NO: 2773
tcaacatggcgagggatca
1407
1426
SEQ ID NO: 4111
tgatcccacctctcattga
2973
2992
1
5


 


SEQ ID NO: 2774
ccaccttgtatgcgctgag
1437
1456
SEQ ID NO: 4112
ctcagggatctgaaggtgg
8195
8214
1
5


 


SEQ ID NO: 2775
gtcaacaactatcataaga
1463
1482
SEQ ID NO: 4113
tcttgagttaaatgctgac
4987
5006
1
5


 


SEQ ID NO: 2776
tggacattgctaattacct
1509
1528
SEQ ID NO: 4114
aggtatattcgaaagtcca
12807
12828
1
5


 


SEQ ID NO: 2777
ggacattgctaattacctg
1510
1529
SEQ ID NO: 4115
caggtatattcgaaagtcc
12806
12825
1
5


 


SEQ ID NO: 2778
ttctgcgggtcattggaaa
1581
1600
SEQ ID NO: 4116
tttcacatgccaaggagaa
6522
6641
1
5


 


SEQ ID NO: 2779
ccagaactcaagtcttcaa
1628
1647
SEQ ID NO: 4117
ttgaagtgtagtctcctgg
5096
5115
1
5


 


SEQ ID NO: 2780
agtcttcaatcctgaaatg
1638
1557
SEQ ID NO: 4118
catttctgattggtggact
7765
7784
1
5


 


SEQ ID NO: 2781
tgagcaagtgaagaacttt
1876
1895
SEQ ID NO: 4119
aaagtgccacttttactca
6191
6210
1
5


 


SEQ ID NO: 2782
agcaagtgaagaactttgt
1878
1897
SEQ ID NO: 4120
acaaagtcagtgccctgct
6015
6034
1
5


 


SEQ ID NO: 2783
tctgaaagaatctcaactt
1972
1991
SEQ ID NO: 4121
aagtccataatggttcaga
12819
12838
1
5


 


SEQ ID NO: 2784
actgtcatggacttcagaa
1994
2013
SEQ ID NO: 4122
ttctgaatatatttgtcagt
13384
13403
1
5


 


SEQ ID NO: 2785
acttgacccagcctcagcc
2069
2078
SEQ ID NO: 4123
ggctcaccctgagagaagt
12399
12418
1
5


 


SEQ ID NO: 2786
tccaaataactaccttcct
2104
2123
SEQ ID NO: 4124
aggaagatatgaagatgga
4720
4739
1
5


 


SEQ ID NO: 2787
actaccctcactgcctttg
2141
2160
SEQ ID NO: 4125
caaatttgtggagggtagt
10327
10346
1
5


 


SEQ ID NO: 2788
ttggatttgcttcagctga
2157
2176
SEQ ID NO: 4126
tcagtataagtacaaccaa
9400
9419
1
5


 


SEQ ID NO: 2789
ttggaagctctttttggga
2219
2238
SEQ ID NO: 4127
tcccgattcacgcttccaa
11585
11604
1
5


 


SEQ ID NO: 2790
ggaagctctttttgggaag
2221
2240
SEQ ID NO: 4128
cttcagaaagctaccttcc
7937
7955
1
5


 


SEQ ID NO: 2791
tttttcccagacagtgtca
2246
2265
SEQ ID NO: 4129
tgaccttctctaagcaaaa
4884
4903
1
5


 


SEQ ID NO: 2792
agacagtgtcaacaaagct
2254
2273
SEQ ID NO: 4130
agcttggttttgccagtct
2466
2485
1
5


 


SEQ ID NO: 2793
ctttggctataccaaagat
2329
2348
SEQ ID NO: 4131
atctcgtgtctaggaaaag
5976
5995
1
5


 


SEQ ID NO: 2794
caaagatgataaacatgag
2341
2360
SEQ ID NO: 4132
ctcaaggataacgtgtttg
12617
12636
1
5


 


SEQ ID NO: 2795
gatatggtaaatggaataa
2363
2382
SEQ ID NO: 4133
ttatcttattaattatatc
13087
13106
1
5


 


SEQ ID NO: 2796
ggaataatgctcagtgttg
2375
2394
SEQ ID NO: 4134
caacacttacttgaattcc
10669
10688
1
5


 


SEQ ID NO: 2797
tttgaaatccaaagaagtc
2410
2429
SEQ ID NO: 4135
gacttcagagaaatacaaa
11408
11427
1
5


 


SEQ ID NO: 2798
gatcccccagatgattgga
2542
2561
SEQ ID NO: 4136
tccaatttccctgtggatc
3669
3708
1
5


 


SEQ ID NO: 2799
cagatgattggagaggtca
2549
2568
SEQ ID NO: 4137
tgaccacacaaacagtctg
5371
5390
1
5


 


SEQ ID NO: 2800
agaatgacttttttcttca
2583
2602
SEQ ID NO: 4138
tgaagtccggattcattct
11023
11042
1
5


 


SEQ ID NO: 2801
gaactccccactggagctg
2627
2646
SEQ ID NO: 4139
cagctcaaccgtacagttc
11869
11688
1
5


 


SEQ ID NO: 2802
atatcttcatctggagtca
2660
2679
SEQ ID NO: 4140
tgacttcagtgcagaatat
11974
11993
1
5


 


SEQ ID NO: 2803
gtcattgctcccggagcca
2675
2694
SEQ ID NO: 4141
tggccccgtttaccatgac
5817
5836
1
5


 


SEQ ID NO: 2804
gctgaagtttatcattcct
2881
2900
SEQ ID NO: 4142
aggaggctttaagttcagc
7608
7627
1
5


 


SEQ ID NO: 2805
attccttccccaaagagac
2894
2913
SEQ ID NO: 4143
gtctcttcctccatggaat
10478
10497
1
5


 


SEQ ID NO: 2806
ctcattgagaacaggcagt
2984
3003
SEQ ID NO: 4144
actgactgcacgctttgag
11764
11783
1
5


 


SEQ ID NO: 2807
ttgagcagtattctgtcag
3150
3169
SEQ ID NO: 4145
ctgagagaagtgtcttcaa
12407
12426
1
5


 


SEQ ID NO: 2808
accttgtccagtgaagtcc
3293
3312
SEQ ID NO: 4146
ggacggtactgtcccaggt
12792
12811
1
5


 


SEQ ID NO: 2809
ccagtgaagtccaaattcc
3300
3319
SEQ ID NO: 4147
ggaaggcagagtttactgg
9156
9175
1
5


 


SEQ ID NO: 2810
acattcagaacaagaaaat
3402
3421
SEQ ID NO: 4148
atttcctaaagctggatgt
11175
11194
1
5


 


SEQ ID NO: 2811
gaaaaatcaagggtgttat
3471
3490
SEQ ID NO: 4149
ataaactgcaagatttttc
13608
13627
1
5


 


SEQ ID NO: 2812
aaatcaagggtgttatttc
3474
3493
SEQ ID NO: 4150
gaaacaatgcattagattt
9753
9772
1
5


 


SEQ ID NO: 2813
tggcattatgatgaagaga
3617
3636
SEQ ID NO: 4151
tctcccgtgtataatgcca
11789
11808
1
5


 


SEQ ID NO: 2814
aagagaagattgaatttga
3630
3649
SEQ ID NO: 4152
tcaaaacctactgtctctt
10466
10485
1
5


 


SEQ ID NO: 2815
aaatgacttccaatttccc
3681
3700
SEQ ID NO: 4153
gggaactacaatttcattt
7021
7040
1
5


 


SEQ ID NO: 2816
atgacttccaatttccctg
3683
3702
SEQ ID NO: 4154
caggctgattacgagtcat
4925
4944
1
5


 


SEQ ID NO: 2817
acttccaatttccctgtgg
3686
3705
SEQ ID NO: 4155
ccacgaaaaatatggaagt
10368
10387
1
5


 


SEQ ID NO: 2818
agttgcaatgagctcatgg
3811
3830
SEQ ID NO: 4156
ccatcagttcagataaact
7997
8016
1
5


 


SEQ ID NO: 2819
tttgcaagaccacctcaat
3868
3887
SEQ ID NO: 4157
attgacctgtccattcaaa
13679
13698
1
5


 


SEQ ID NO: 2820
gaaggagttcaacctccag
3892
3911
SEQ ID NO: 4158
ctggaattgtcattccttc
11738
11755
1
5


 


SEQ ID NO: 2821
acttccacatcccagaaaa
3927
3946
SEQ ID NO: 4159
ttttaacaaaagtggaagt
6829
6848
1
5


 


SEQ ID NO: 2822
ctcttcttaaaaagcgatg
3947
3966
SEQ ID NO: 4160
catcactgccaaaggagag
8494
8513
1
5


 


SEQ ID NO: 2823
aaaagcgatggccgggtca
3956
3975
SEQ ID NO: 4161
tgactcactcattgatttt
12688
12707
1
5


 


SEQ ID NO: 2824
ttcctttgccttttggtgg
4011
4030
SEQ ID NO: 4162
ccacaaacaatgaagggaa
9264
9283
1
5


 


SEQ ID NO: 2825
caagtctgtgggattccat
4087
4106
SEQ ID NO: 4163
atgggaaaaaacaggcttg
9574
9593
1
5


 


SEQ ID NO: 2826
aagtccctacttttaccat
4125
4144
SEQ ID NO: 4164
atgggaagtataagaactt
4842
4861
1
5


 


SEQ ID NO: 2827
tgcctctcctgggtgttct
4167
4186
SEQ ID NO: 4165
agaaaaacaaacacaggca
9651
9670
1
5


 


SEQ ID NO: 2828
accagcacagaccatttca
4250
4269
SEQ ID NO: 4166
tgaagtgtagtctcctggt
5097
5116
1
5


 


SEQ ID NO: 2829
ccagcacagaccatttcag
4251
4270
SEQ ID NO: 4167
ctgaaatacaatgctctgg
5519
5538
1
5


 


SEQ ID NO: 2830
actatcatgtgatgggtct
4375
4394
SEQ ID NO: 4168
agacacctgattttatagt
7956
7975
1
5


 


SEQ ID NO: 2831
accacagatgtctgcttca
4504
4523
SEQ ID NO: 4169
tgaaggctgactctgtggt
4290
4309
1
5


 


SEQ ID NO: 2832
ccacagatgtctgcttcag
4505
4524
SEQ ID NO: 4170
ctgagcaacaaatttgtgg
10319
10338
1
5


 


SEQ ID NO: 2833
tttggactccaaaaagaaa
4528
4547
SEQ ID NO: 4171
tttctctcatgattacaaa
5941
5960
1
5


 


SEQ ID NO: 2834
tcaaagaagtcaagattga
4560
4579
SEQ ID NO: 4172
tcaaggataacgtgtttga
12618
12637
1
5


 


SEQ ID NO: 2835
atgagaactacgagctgac
4806
4825
SEQ ID NO: 4173
gtcagatattgttgctcat
10195
10214
1
5


 


SEQ ID NO: 2836
ttaaaatctgacaccaatg
4826
4845
SEQ ID NO: 4174
cattcattgaagatgttaa
7350
7369
1
5


 


SEQ ID NO: 2837
gaagtataagaactttgcc
4840
4865
SEQ ID NO: 4175
ggcaaatttgaaggacttc
12002
12021
1
5


 


SEQ ID NO: 2838
aagtataagaactttgcca
4847
4866
SEQ ID NO: 4176
tggcaaatttgaaggactt
12001
12020
1
5


 


SEQ ID NO: 2839
ttcttcagcctgctttctg
4949
4968
SEQ ID NO: 4177
cagaatccagatacaagaa
6892
6911
1
5


 


SEQ ID NO: 2840
ctggatcactaaattccca
4965
4984
SEQ ID NO: 4178
tgggtctttccagagccag
11041
11060
1
5


 


SEQ ID NO: 2841
aaattaatagtggtgctca
5022
5041
SEQ ID NO: 4179
tgagaagccccaagaattt
6256
6275
1
5


 


SEQ ID NO: 2842
agtgcaacgaccaacttga
5081
5100
SEQ ID NO: 4180
tcaaattcctggatacact
9856
9875
1
5


 


SEQ ID NO: 2843
ctgggaagtgcttatcagg
5246
5265
SEQ ID NO: 4181
cctgaccttcacataccag
8318
8337
1
5


 


SEQ ID NO: 2844
gcaaaaacattttcaactt
5286
5305
SEQ ID NO: 4182
aagtaaaagaaaattttgc
10752
10771
1
5


 


SEQ ID NO: 2845
aaaaacattttcaacttca
5288
5307
SEQ ID NO: 4183
tgaagtaaaagaaaatttt
10750
10769
1
5


 


SEQ ID NO: 2846
tcagtcaagaaggacttaa
5310
5329
SEQ ID NO: 4184
ttaaggacttccattctga
13371
13390
1
5


 


SEQ ID NO: 2847
tcaaatgacatgatgggct
5333
5352
SEQ ID NO: 4185
agcccatcaatatcattga
6213
6232
1
5


 


SEQ ID NO: 2848
cacacaaacagtctgaaca
5375
5394
SEQ ID NO: 4186
tgtttcaactgcctttgtg
11227
11246
1
5


 


SEQ ID NO: 2849
tcttcaaaacttgacaaca
5417
5436
SEQ ID NO: 4187
tgttttcctatttccaaga
12843
12862
1
5


 


SEQ ID NO: 2850
caagttttataagcaaact
5449
5468
SEQ ID NO: 4188
agttattttgctaaacttg
14061
14070
1
5


 


SEQ ID NO: 2851
tggtaactactttaaacag
5496
5515
SEQ ID NO: 4189
ctgtttttagaggaaacca
7520
7539
1
5


 


SEQ ID NO: 2852
aacagtgacctgaaataca
5510
5529
SEQ ID NO: 4190
tgtatagcaaattcctgtt
5898
5917
1
5


 


SEQ ID NO: 2853
gggaaactacggctagaac
5552
5571
SEQ ID NO: 4191
gttccttccatgatttccc
10941
10960
1
5


 


SEQ ID NO: 2854
aacacatctatgccatctc
5628
5647
SEQ ID NO: 4192
gagacagcatcttcgtgtt
11212
11231
1
5


 


SEQ ID NO: 2855
tcagcaagctataaagcag
5660
5679
SEQ ID NO: 4193
ctgctaagaaccttactga
7788
7807
1
5


 


SEQ ID NO: 2856
gcagacactgttgctaagg
5675
5694
SEQ ID NO: 4194
cctttcaagcactgactgc
11754
11773
1
5


 


SEQ ID NO: 2857
tctggggagaacatactgg
5874
5893
SEQ ID NO: 4195
ccaggttttccacaccaga
8046
8065
1
5


 


SEQ ID NO: 2858
ttctctcatgattacaaag
5942
5961
SEQ ID NO: 4196
ctttttcaccaacggagaa
10846
10865
1
5


 


SEQ ID NO: 2859
ctgagcagacaggcacctg
6042
6061
SEQ ID NO: 4197
caggaggctttaagttcag
7607
7626
1
5


 


SEQ ID NO: 2860
caatttaacaacaatgaat
6074
6093
SEQ ID NO: 4198
attccttcctttacaattg
8090
8109
1
5


 


SEQ ID NO: 2861
tggacgaactctggctgac
6148
6167
SEQ ID NO: 4199
gtcagcccagttccttcca
10932
10951
1
5


 


SEQ ID NO: 2862
cttttactcagtgagccca
6200
6219
SEQ ID NO: 4200
tgggctaaacgtatgaaag
7835
7854
1
5


 


SEQ ID NO: 2863
tcattgatgctttagagat
6225
6244
SEQ ID NO: 4201
atcttcataagttcaatga
13182
13201
1
5


 


SEQ ID NO: 2864
aaaaccaagatgttcactc
6303
6322
SEQ ID NO: 4202
gagtgaaatgctgtttttt
8638
8657
1
5


 


SEQ ID NO: 2865
aggaatcgacaaaccatta
6365
6384
SEQ ID NO: 4203
taatgattttcaagttcct
8302
8321
1
5


 


SEQ ID NO: 2866
tagttgtactggaaaacgt
6384
6403
SEQ ID NO: 4204
acgttagcctctaagacta
11936
11955
1
5


 


SEQ ID NO: 2867
ggaaaacgtacagagaaag
6394
6413
SEQ ID NO: 4205
cttttacaattcattttcc
13022
13041
1
5


 


SEQ ID NO: 2868
gaaaacgtacagagaaaga
6395
6414
SEQ ID NO: 4206
gctttctcttccacatttc
10060
10079
1
5


 


SEQ ID NO: 2869
aaagctgaagcacatcaat
6409
6428
SEQ ID NO: 4207
attgatgttagagtgcttt
6992
7011
1
5


 


SEQ ID NO: 2870
aagctgaagcacatcaat
6410
6429
SEQ ID NO: 4208
tattgatgttagagtgctt
6991
7010
1
5


 


SEQ ID NO: 2871
tgaagcacatcaatattga
6414
6433
SEQ ID NO: 4209
tcaaccttaatgattttca
6295
8314
1
5


 


SEQ ID NO: 2872
atcaatattgatcaaattt
6422
6441
SEQ ID NO: 4210
caaagccatcactgatgat
1668
1687
1
5



g


 


SEQ ID NO: 2873
taatgattatctgaattca
6464
6503
SEQ ID NO: 4211
tgaaatcattgaaaaatta
6727
6746
1
5


 


SEQ ID NO: 2874
gattatctgaattcattca
6466
6507
SEQ ID NO: 4212
tgaagtagctgagaaaatc
7120
7121
1
5


 


SEQ ID NO: 2875
aattgggagagacaagttt
6508
6525
SEQ ID NO: 4213
aaacattcctttaacaatt
9498
9515
1
5


 


SEQ ID NO: 2876
aaaatagctattgctaata
6701
6720
SEQ ID NO: 4214
tattgaaaatattgatttt
6814
6833
1
5


 


SEQ ID NO: 2877
aaaattaaaaagtcttgat
6739
6758
SEQ ID NO: 4215
atcatatccgtgtaatttt
6765
6784
1
5


 


SEQ ID NO: 2878
ttgaaaatattgattttaa
6818
6835
SEQ ID NO: 4216
ttaatcttcataagttcaa
13179
13198
1
5


 


SEQ ID NO: 2879
agacatccagcacctagct
6946
6965
SEQ ID NO: 4217
agcttggttttgccagtct
2468
2485
1
5


 


SEQ ID NO: 2880
caatttcatttgaaagaat
7029
7048
SEQ ID NO: 4218
attccttcctttacaattg
8090
8109
1
5


 


SEQ ID NO: 2881
aggttttaatggataaatt
7182
7201
SEQ ID NO: 4219
aattgttgaaagaaaacct
13155
13174
1
5


 


SEQ ID NO: 2882
cagaagctaagcaatgtcc
7241
7280
SEQ ID NO: 4220
ggacaaggcccagaatctg
12553
12572
1
5


 


SEQ ID NO: 2883
taagataaaagattacttt
7270
7289
SEQ ID NO: 4221
aaagaaaacctatgcctta
13163
13182
1
5


 


SEQ ID NO: 2884
aaagattactttgagaaat
7277
7296
SEQ ID NO: 4222
atttcttaaacattccttt
9489
9508
1
5


 


SEQ ID NO: 2885
gagaaattagttggattta
7289
7308
SEQ ID NO: 4223
taaagccattcagtctctc
12970
12989
1
5


 


SEQ ID NO: 2886
atttattgatgatgctgtc
7303
7322
SEQ ID NO: 4224
gacatgttgataaagaaat
7379
7398
1
5


 


SEQ ID NO: 2887
gaattatcttttaaaacat
7334
7353
SEQ ID NO: 4225
atgtatcaaatggacattc
7685
7704
1
5


 


SEQ ID NO: 2888
ttaccaccagtttgtagat
7411
7430
SEQ ID NO: 4226
atctggaaccttgaagtaa
10739
10758
1
5


 


SEQ ID NO: 2889
ttgcagtgtatctggaaag
7548
7567
SEQ ID NO: 4227
cttttcacattagatgcaa
8420
8439
1
5


 


SEQ ID NO: 2890
cattcagcaggaacttcaa
7899
7718
SEQ ID NO: 4228
ttgaaggacttcaggaatg
12099
12028
1
5


 


SEQ ID NO: 2891
acacctgattttatagtcc
7958
7977
SEQ ID NO: 4229
ggactcaaggataacgtgt
12814
12633
1
5


 


SEQ ID NO: 2892
ggattccatcagttcagat
7992
8011
SEQ ID NO: 4230
atcttcaatgattatatcc
13124
13143
1
5


 


SEQ ID NO: 2893
ttgtagaaatgaaagtaaa
8112
8131
SEQ ID NO: 4231
tttatgattatgtcaacaa
12380
12379
1
5


 


SEQ ID NO: 2894
ctgaacagtgagctgcagt
8168
8175
SEQ ID NO: 4232
actggacttctctagtcag
8800
8828
1
5


 


SEQ ID NO: 2895
aatccaatctcctcttttc
8407
8426
SEQ ID NO: 4233
gaaaaatgaagtccggatt
11017
11036
1
5


 


SEQ ID NO: 2896
attttgattttcaagcaa
8532
8551
SEQ ID NO: 4234
tttgcaagttaaagaaaat
14023
14042
1
5


 


SEQ ID NO: 2897
ttttgattttcaagcaaat
8533
8552
SEQ ID NO: 4235
atttgatttaagtgtaaaa
9822
9641
1
5


 


SEQ ID NO: 2898
tgattttcaagcaaatgca
8536
8555
SEQ ID NO: 4236
tgcaagttaaagaaaatca
14025
14044
1
5


 


SEQ ID NO: 2899
atgctgttttttggaaatg
8645
8664
SEQ ID NO: 4237
cattggtaggagacagcat
11203
11222
1
5


 


SEQ ID NO: 2900
tgctgttttttggaaatgc
8646
8665
SEQ ID NO: 4238
gcattggtaggagacagca
11202
11221
1
5


 


SEQ ID NO: 2901
aaaaaaatacactggagct
8706
8725
SEQ ID NO: 4239
agctagagggcctcttttt
10833
10652
1
5


 


SEQ ID NO: 2902
actggagcttagtaatgga
8716
8735
SEQ ID NO: 4240
tccactcacatcctccagt
1289
1308
1
5


 


SEQ ID NO: 2903
cttctggaaaagggtcatg
8886
8905
SEQ ID NO: 4241
catgaacccctacatgaag
13750
13778
1
5


 


SEQ ID NO: 2904
ggaaaagggtcatggaaat
8891
8910
SEQ ID NO: 4242
atttgaaagttcgttttcc
9282
9301
1
5


 


SEQ ID NO: 2905
gggcctgccccagattctc
8910
8929
SEQ ID NO: 4243
gagaacattatggaggccc
9440
9459
1
5


 


SEQ ID NO: 2906
ttctcagatgagggaacac
8924
8943
SEQ ID NO: 4244
gtgtcttcaaagctgagaa
12416
12435
1
5


 


SEQ ID NO: 2907
gatgagggaacacatgaat
8930
8949
SEQ ID NO: 4245
attccagcttccccacatc
8338
8357
1
5


 


SEQ ID NO: 2908
ctttggactgtccaataag
8088
9005
SEQ ID NO: 4246
cttatgggatttcctaaag
11167
11186
1
5


 


SEQ ID NO: 2909
gcatccacaaacaatgaag
9260
9279
SEQ ID NO: 4247
cttcatctgtcattgatgc
10227
10246
1
5


 


SEQ ID NO: 2910
cacaaacaatgaagggaat
9265
9284
SEQ ID NO: 4248
attccctgaagttgatgtg
11488
11507
1
5


 


SEQ ID NO: 2911
ccaaaatttctctgctgg
9415
9434
SEQ ID NO: 4249
tccatcacaaatcctttgg
9871
9690
1
5


 


SEQ ID NO: 2912
caaaatttctctgctggaa
9416
9435
SEQ ID NO: 4250
ttccatcacaaatcctttg
9670
9689
1
5


 


SEQ ID NO: 2913
tctgctggaaacaacgaga
9425
9444
SEQ ID NO: 4251
ttctcaagagttacagcaga
13229
13248
1
5


 


SEQ ID NO: 2914
ctgctggaaacaacgagaa
9426
9445
SEQ ID NO: 4252
ttctcaagagttacagcag
13228
13247
1
5


 


SEQ ID NO: 2915
agaacattatggaggccca
9441
9460
SEQ ID NO: 4253
tgggcctgccccagattct
8909
8928
1
5


 


SEQ ID NO: 2916
agaagcaaatctggatttc
9475
9494
SEQ ID NO: 4254
gaaatcttcaatttattct
13821
13840
1
5


 


SEQ ID NO: 2917
tttctctctatgggaaaaa
9565
9584
SEQ ID NO: 4255
tttttgcaagttaaagaaa
14021
14040
1
5


 


SEQ ID NO: 2918
tcagagcatcaaatccttt
9712
9731
SEQ ID NO: 4256
aaagaaaatcaggatctga
14033
14052
1
5


 


SEQ ID NO: 2919
cagaaacaatgcattagat
9751
9776
SEQ ID NO: 4257
atctatgccatctcttctg
8663
5662
1
5


 


SEQ ID NO: 2920
tacacattaatcctgccat
10001
10020
SEQ ID NO: 4258
atggagtctttattgtgta
14089
14108
1
5


 


SEQ ID NO: 2921
agtcagatattgttgctca
10194
10213
SEQ ID NO: 4259
tgagaactacgagctgact
4807
4826
1
5


 


SEQ ID NO: 2922
ggagggtagtcataacagt
10336
10355
SEQ ID NO: 4260
actggtggcaaaaccctcc
2734
2753
1
5


 


SEQ ID NO: 2923
caaaagccgaaattccaat
10404
10423
SEQ ID NO: 4261
attgaagtacctacttttg
8366
8385
1
5


 


SEQ ID NO: 2924
aaaagccgaaattccaatt
10405
10424
SEQ ID NO: 4262
aattgaagtacctacttttt
8655
8384
1
5


 


SEQ ID NO: 2925
ttcaagcaagaacttaatg
10436
10455
SEQ ID NO: 4263
cattatggcccttcgtgaa
13258
13277
1
5


 


SEQ ID NO: 2926
cctcttacttttccattga
10578
10597
SEQ ID NO: 4264
tcaaaagaagcccaagagg
12947
12966
1
5


 


SEQ ID NO: 2927
tgaggccaacacttacttg
10663
10682
SEQ ID NO: 4265
caagcatctgattgactca
12678
12695
1
5


 


SEQ ID NO: 2928
cacttacttgaattccaag
10872
10691
SEQ ID NO: 4266
cttgaacacaaagtcagtg
6008
6027
1
5


 


SEQ ID NO: 2929
gaagtaaaagaaaattttg
10751
10770
SEQ ID NO: 4267
caaaaacattttcaacttc
5287
5306
1
5


 


SEQ ID NO: 2930
cctggaactctctccatgg
10562
10901
SEQ ID NO: 4268
ccatttacagatcttcagg
11372
11391
1
5


 


SEQ ID NO: 2931
agctggatgtaaccaccag
11184
11203
SEQ ID NO: 4269
ctggattccacatgcagct
11855
11874
1
5


 


SEQ ID NO: 2932
aaaattccctgaagttgat
11485
11504
SEQ ID NO: 4270
atcatatccgtgtaatttt
6785
6784
1
5


 


SEQ ID NO: 2933
cagatggcattgctgctt
11813
11632
SEQ ID NO: 4271
aaagctgagaagaaatctg
12424
12443
1
5


 


SEQ ID NO: 2934
agatggcattgctgctttg
11614
11833
SEQ ID NO: 4272
caaagctgagaagaaatct
12423
12442
1
5


 


SEQ ID NO: 2935
tgttgaaacagtcctggat
11642
11861
SEQ ID NO: 4273
atccaagatgagatcaaca
13103
13122
1
5


 


SEQ ID NO: 2936
catattcaaaactgagttg
12228
13248
SEQ ID NO: 4274
caactctctgattactatg
13631
13650
1
5


 


SEQ ID NO: 2937
aaagatttatcaaaagaag
12938
12957
SEQ ID NO: 4275
cttcaatttattcttcttt
13828
13845
1
5


 


SEQ ID NO: 2938
attttccaactaatagaag
13034
13053
SEQ ID NO: 4276
cttcaaagacttaaaaaat
8014
8033
1
5


 


SEQ ID NO: 2939
aattatatccaagatgaga
13097
13116
SEQ ID NO: 4277
tctcttcctccatggaatt
10479
10498
1
5


 


SEQ ID NO: 2940
ttcaggaagcttctcaaga
13218
13237
SEQ ID NO: 4278
tcttcataagttcaatgaa
13183
13202
1
5


 


SEQ ID NO: 2941
ttgagcaatttctgcacag
13437
13456
SEQ ID NO: 4279
ctgttgaaagatttatcaa
12932
12951
1
5


 


SEQ ID NO: 2942
ctgatatacatcacggagt
13712
13731
SEQ ID NO: 4280
actcaatggtgaaattcag
7465
7484
1
5


 


SEQ ID NO: 2943
acatcacggagttactgaa
13719
13738
SEQ ID NO: 4281
ttcagaagctaagcaatgt
7239
7258
1
5


 


SEQ ID NO: 2944
actgcctatattgataaaa
13882
13901
SEQ ID NO: 4282
ttttggcaagctatacagt
8380
8399
1
5


 


SEQ ID NO: 2945
aggatggcattttttgcaa
14011
14030
SEQ ID NO: 4283
ttgcaagcaagtctttcct
3013
3032
1
5


 


SEQ ID NO: 2946
ttttttgcaagttaaagaa
14620
14039
SEQ ID NO: 4284
ttctctctatgggaaaaaa
9556
9585
1
5


 


SEQ ID NO: 2947
tccagaactcaagtcttca
1627
1646
SEQ ID NO: 4285
tgaaatgctgttttttgga
8641
8660
3
4


 


SEQ ID NO: 2948
agttagtgaaagaagttct
1956
1975
SEQ ID NO: 4286
agaatctgtaccaggaact
12564
12583
3
4


 


SEQ ID NO: 2949
atttacagctctgacaagt
6435
5484
SEQ ID NO: 4287
acttcagagaaatacaaat
11409
11428
3
4


 


SEQ ID NO: 2950
gattatctgaattcattca
6488
6507
SEQ ID NO: 4288
tgaaaccaatgacaaaatc
7429
7448
3
4


 


SEQ ID NO: 2951
gtgcccttctcggttgctg
26
45
SEQ ID NO: 4289
cagctgagcagacaggcac
6039
6058
2
4


 


SEQ ID NO: 2952
attcaagcacctccggaag
253
272
SEQ ID NO: 4290
cttcataagttcaatgaat
13184
13203
2
4


 


SEQ ID NO: 2953
gactgctgattcaagaagt
316
335
SEQ ID NO: 4291
acttcccaactctcaagtc
13415
13434
2
4


 


SEQ ID NO: 2954
ttgctgcagccatgtccag
483
602
SEQ ID NO: 4292
ctgggcagctgtatagcaa
5889
5908
2
4


 


SEQ ID NO: 2955
agaaagatgaacctactta
555
574
SEQ ID NO: 4293
taagtatgatttcaattct
10498
10517
2
4


 


SEQ ID NO: 2956
tgaagactctccaggaact
1085
1114
SEQ ID NO: 4294
agttcaatgaatttattca
13181
13210
2
4


 


SEQ ID NO: 2957
atctctcttgccacagctg
1210
1229
SEQ ID NO: 4295
cagcccagccatttgagat
9237
9256
2
4


 


SEQ ID NO: 2958
tctctcttgccacagctga
1211
1230
SEQ ID NO: 4296
tcagcccagccatttgaga
9236
9256
2
4


 


SEQ ID NO: 2959
tgaggtgtccagccccat
1231
1250
SEQ ID NO: 4297
gatgggaaagccgccctca
5218
5235
2
4


 


SEQ ID NO: 2960
ccagaactcaagtcttcaa
1628
1647
SEQ ID NO: 4298
ttgaaagcagaacctctgg
5915
5934
2
4


 


SEQ ID NO: 2961
ctgaaaaagttagtgaaag
1949
1968
SEQ ID NO: 4299
ctttctcgggaatattcag
10631
10650
2
4


 


SEQ ID NO: 2962
tttttcccagacagtgtca
2246
2265
SEQ ID NO: 4300
tgacaggcattttgaaaaa
9730
9749
2
4


 


SEQ ID NO: 2963
ttttcccagacagtgtcaa
2247
2266
SEQ ID NO: 4301
ttgacaggcattttgaaaa
9729
9748
2
4


 


SEQ ID NO: 2964
cattcagaacaagaaaatt
3403
3422
SEQ ID NO: 4302
aattccaattttgagaatg
10414
10433
2
4


 


SEQ ID NO: 2965
tgaagagaagattgaattt
3628
3647
SEQ ID NO: 4303
aaatgtcagctcttgttca
10902
10921
2
4


 


SEQ ID NO: 2966
tttgaatggaacacaggcc
3644
3663
SEQ ID NO: 4304
tgccagtttgaaaaacaaa
11815
11834
2
4


 


SEQ ID NO: 2967
ttctagattcgaatatcaa
4407
4426
SEQ ID NO: 4305
ttgacatgttgataaagaa
7377
7396
2
4


 


SEQ ID NO: 2968
gattcgaatatcaaattca
4412
4431
SEQ ID NO: 4306
tgaagtagaccaacaaatc
7162
7181
2
4


 


SEQ ID NO: 2969
tgcaacgaccaacttgaag
5083
5102
SEQ ID NO: 4307
cttcaggttccatcgtgca
11384
11403
2
4


 


SEQ ID NO: 2970
ttaagctctcaaatgacat
5325
5344
SEQ ID NO: 4308
atgttgataaagaaattaa
7382
7401
2
4


 


SEQ ID NO: 2971
caatttaacaacaatgaat
6074
6093
SEQ ID NO: 4309
attcaaactgcctatattg
13876
13895
2
4


 


SEQ ID NO: 2972
tgaatacagccaggacttg
6088
6107
SEQ ID NO: 4310
caagagcacacggtcttca
10587
10706
2
4


 


SEQ ID NO: 2973
catcaatattgatcaattt
6421
6440
SEQ ID NO: 4311
aaattccctgaagttgatg
11486
11505
2
4


 


SEQ ID NO: 2974
ttgagcatgtcaaacactt
7059
7078
SEQ ID NO: 4312
aagtaagtgctaggttcaa
9381
9400
2
4


 


SEQ ID NO: 2975
tgaaggagactattcagaa
7227
7246
SEQ ID NO: 4313
ttctgcacagaaatattca
13446
13465
2
4


 


SEQ ID NO: 2976
ttcaggctcttcagaaagc
7929
7948
SEQ ID NO: 4314
gcttgctaacctctctgaa
12312
12331
2
4


 


SEQ ID NO: 2977
tccacaaattgaacatccc
8787
8806
SEQ ID NO: 4315
gggacctaccaagagtgga
12633
12552
2
4


 


SEQ ID NO: 2978
tgaataccaatgctgaact
10167
10188
SEQ ID NO: 4316
agttcaatgaatttattca
13191
13210
2
4


 


SEQ ID NO: 2979
taaactaatagatgtaatc
12898
12917
SEQ ID NO: 4317
gattactatgaaaaattta
13640
13669
2
4


 


SEQ ID NO: 2980
ttgacctgtccattcaaaa
13680
13699
SEQ ID NO: 4318
ttttaaaagaaatcttcaa
13813
13832
2
4


 


SEQ ID NO: 2981
gggctgagtgcccttctcg
19
38
SEQ ID NO: 4319
cgaggccaggccgcagccc
84
103
1
4


 


SEQ ID NO: 2982
ggctgagtgcccttctcgg
20
39
SEQ ID NO: 4320
ccgaggccaggccgcagcc
83
102
1
4


 


SEQ ID NO: 2983
ctgagtgcccttctcggtt
22
41
SEQ ID NO: 4321
aaccgtgcctgaatctcag
11657
11576
1
4


 


SEQ ID NO: 2984
tctcggttgctgccgctga
33
52
SEQ ID NO: 4322
tcagctgacctcatcgaga
2168
2187
1
4


 


SEQ ID NO: 2985
caggccgcagcccaggagc
90
109
SEQ ID NO: 4323
gctctgcagcttcatcctg
376
395
1
4


 


SEQ ID NO: 2986
gctggcgctgcctgcgctg
151
170
SEQ ID NO: 4324
cagcacagaccatttcagc
4252
4271
1
4


 


SEQ ID NO: 2987
tgctgctggcgggcgccag
177
196
SEQ ID NO: 4325
ctggatgtaaccaccagca
11186
11205
1
4


 


SEQ ID NO: 2988
ctggtctgtccaaaagatg
227
246
SEQ ID NO: 4326
catcctgaagaccagccag
388
407
1
4


 


SEQ ID NO: 2989
ctgagagttccagtggagt
291
310
SEQ ID NO: 4327
actcaccctggacattcag
3391
3410
1
4


 


SEQ ID NO: 2990
tccagtggagtccatggga
299
318
SEQ ID NO: 4328
tcccggagccaaggctgga
2683
2702
1
4


 


SEQ ID NO: 2991
aggttgagctggaggttcc
354
373
SEQ ID NO: 4329
ggaaccctctccctcacct
4736
4755
1
4


 


SEQ ID NO: 2992
tgagctggaggttccccag
358
377
SEQ ID NO: 4330
ctgggaggcatgatgctca
9171
9190
1
4


 


SEQ ID NO: 2993
tctgcagcttcatcctgaa
378
397
SEQ ID NO: 4331
ttcaaatataatcggcaga
3269
3288
1
4


 


SEQ ID NO: 2994
gccagtgcaccctgaaaga
402
421
SEQ ID NO: 4332
tcttccgttctgtaatggc
5820
5821
1
4


 


SEQ ID NO: 2995
ctctgaggagtttgctgca
472
491
SEQ ID NO: 4333
tgcaagaatattttgagag
6348
6367
1
4


 


SEQ ID NO: 2996
aggttatgagctcaagctg
500
519
SEQ ID NO: 4334
ccagtttccggggaaacct
12724
12743
1
4



g


 


SEQ ID NO: 2997
tcctttacccggagaaaga
543
552
SEQ ID NO: 4335
tctttttgggaagcaagga
2227
2246
1
4


 


SEQ ID NO: 2998
catcaagaggggcatcatt
583
602
SEQ ID NO: 4336
aatggtcaagttcctgatg
2255
2304
1
4


 


SEQ ID NO: 2999
tcctggttcccccagagac
609
628
SEQ ID NO: 4337
gtctctgaactcagaagga
13998
14015
1
4


 


SEQ ID NO: 3000
aagaagccaagcaagtgtt
630
649
SEQ ID NO: 4338
aacaaataaatggagtctt
14080
14099
1
4


 


SEQ ID NO: 3001
aagcaagtgttgtttctgg
638
657
SEQ ID NO: 4339
ccagagccaggtcgagctt
11050
11069
1
4


 


SEQ ID NO: 3002
tctggataccgtgtatgga
652
671
SEQ ID NO: 4340
tccatgtcccatttacaga
11364
11383
1
4


 


SEQ ID NO: 3003
ccactcactttaccgtcaa
678
697
SEQ ID NO: 4341
ttgattttaacaaaagtgg
6825
6844
1
4


 


SEQ ID NO: 3004
aggaagggcaatgtggcaa
701
720
SEQ ID NO: 4342
ttgcaagcaagtctttcct
3013
3032
1
4


 


SEQ ID NO: 3005
gcaatgtggcaacagaaat
708
727
SEQ ID NO: 4343
atttccataccccgtttgc
3483
3507
1
4


 


SEQ ID NO: 3006
caatgtggcaacagaaata
709
728
SEQ ID NO: 4344
tattcttcttttccaattg
13834
13863
1
4


 


SEQ ID NO: 3007
tggcaacagaaatatccac
714
733
SEQ ID NO: 4345
gtggcttcccatattgcca
1895
1914
1
4


 


SEQ ID NO: 3008
agagacctgggccagtgtg
737
756
SEQ ID NO: 4346
cacattacatttggtctct
2938
2957
1
4


 


SEQ ID NO: 3009
tgtgatcgcttcaagccca
752
771
SEQ ID NO: 4349
tgggaaagccgccctcaca
5218
5237
1
4


 


SEQ ID NO: 3010
gtgatcgcttcaagcccat
753
772
SEQ ID NO: 4350
atgggaaagccgccctcac
5217
5236
1
4


 


SEQ ID NO: 3011
cagcccacttgctctcatc
784
803
SEQ ID NO: 4351
gatgctgaacagtgagctg
8152
8171
1
4


 


SEQ ID NO: 3012
gctctcatcaaaggcatga
784
813
SEQ ID NO: 4352
tcataacagtactgtgagc
10346
10364
1
4


 


SEQ ID NO: 3013
ccttgtcaactctgatcag
819
838
SEQ ID NO: 4353
ctgagtgggtttatcaagg
12453
12472
1
4


 


SEQ ID NO: 3014
cttgtcaactctgatcagc
820
839
SEQ ID NO: 4354
gctgagtgggtttatcaag
12452
12471
1
4


 


SEQ ID NO: 3015
agccatctgcaaggagcaa
892
911
SEQ ID NO: 4355
ttgcaatgagctcatggct
3813
3832
1
4


 


SEQ ID NO: 3016
gccatctgcaaggagcaac
893
912
SEQ ID NO: 4356
gttgcaatgagctcatggc
3812
3831
1
4


 


SEQ ID NO: 3017
cttcctgcctttctcctac
916
935
SEQ ID NO: 4357
gtaggaataaatggagaag
9461
9480
1
4


 


SEQ ID NO: 3018
ctttctcctacaagaataa
924
943
SEQ ID NO: 4358
ttattgctgaatccaaaag
13866
13675
1
4


 


SEQ ID NO: 3019
gatcaacagccgcttcttt
997
1016
SEQ ID NO: 4359
aaagccatcactgatgatc
1669
1688
1
4


 


SEQ ID NO: 3020
atcaacagccgcttctttg
998
1017
SEQ ID NO: 4360
caaagccatcactgatgat
1668
1687
1
4


 


SEQ ID NO: 3021
acagccgcttctttggtga
1002
1021
SEQ ID NO: 4361
tcacaaatcctttggctgt
9675
9694
1
4


 


SEQ ID NO: 3022
aagatgggcctcgcatttg
1031
1060
SEQ ID NO: 4362
caaaatagaagggaatctt
2077
2096
1
4


 


SEQ ID NO: 3023
tgttttgaagactctccag
1090
1109
SEQ ID NO: 4363
ctggtaactactttaaaca
5495
5514
1
4


 


SEQ ID NO: 3024
ttgaagactctccaggaac
1094
1113
SEQ ID NO: 4364
gttcaatgaatttattcaa
13192
13211
1
4


 


SEQ ID NO: 3025
aactgaaaaaactaaccat
1110
1129
SEQ ID NO: 4365
atggcattttttgcaagtt
14014
14033
1
4


 


SEQ ID NO: 3026
ctgaaaaaactaaccatct
1112
1131
SEQ ID NO: 4366
agattgatgggcagttcag
4572
4691
1
4


 


SEQ ID NO: 3027
aaaactaaccatctctgag
1117
1136
SEQ ID NO: 4367
ctcaaagaatgactttttt
2578
2597
1
4


 


SEQ ID NO: 3028
tgagcaaaatatccagaga
1132
1151
SEQ ID NO: 4368
tctccagataaaaaactca
12209
12228
1
4


 


SEQ ID NO: 3029
caataagctggttactgag
1162
1181
SEQ ID NO: 4369
ctcagatcaaagttaattg
12273
12292
1
4


 


SEQ ID NO: 3030
tactgagctgagaggccta
1174
1193
SEQ ID NO: 4370
gagggtagtcataacagta
10337
10356
1
4


 


SEQ ID NO: 3031
gcctcagtgatgaagcagt
1188
1207
SEQ ID NO: 4371
actgttgactcaggaaggc
12580
12599
1
4


 


SEQ ID NO: 3032
agtcacatctctcttgcca
1204
1223
SEQ ID NO: 4372
tggccacatagcatggact
8866
8885
1
4


 


SEQ ID NO: 3033
atctctcttgccacagctg
1210
1229
SEQ ID NO: 4373
cagctgacctcatcgagat
2169
2188
1
4


 


SEQ ID NO: 3034
tctctcttgccacagctga
1211
1230
SEQ ID NO: 4374
tcagctgacctcatcgaga
2168
2187
1
4


 


SEQ ID NO: 3035
tgccacagctgattgaggt
1218
1237
SEQ ID NO: 4375
acctgcaccaaagctggca
13963
13982
1
4


 


SEQ ID NO: 3036
gccacagctgattgaggtg
1219
1238
SEQ ID NO: 4376
caccaaaaaccccaatggc
11248
11267
1
4


 


SEQ ID NO: 3037
tcactttacaagccttggt
1248
1267
SEQ ID NO: 4377
accagatgctgaacagtga
8148
8167
1
4


 


SEQ ID NO: 3038
cccttctgatagatgtggt
1332
1351
SEQ ID NO: 4378
accacttacagctagaggg
10824
10843
1
4


 


SEQ ID NO: 3039
gtcacctacctggtggccc
1349
1368
SEQ ID NO: 4379
gggcgacctaagttgtgac
3439
3458
1
4


 


SEQ ID NO: 3040
ccttgtatgcgctgagcca
1440
1459
SEQ ID NO: 4380
tggctggtaacctaaaagg
5586
5605
1
4


 


SEQ ID NO: 3041
gacaaaccctacagggacc
1480
1499
SEQ ID NO: 4381
ggtcctttatgattatgtc
12355
12374
1
4


 


SEQ ID NO: 3042
tgctaattacctgatggaa
1516
1535
SEQ ID NO: 4382
ttcccaaaagcagtcagca
9938
9957
1
4


 


SEQ ID NO: 3043
tgactgcactggggatgaa
1546
1565
SEQ ID NO: 4383
ttcaggtccatgcaagtca
10917
10936
1
4


 


SEQ ID NO: 3044
actgcactggggatgaaga
1548
1567
SEQ ID NO: 4384
tcttgaacacaaagtcagt
6007
6026
1
4


 


SEQ ID NO: 3045
atgaagattacacctattt
1560
1579
SEQ ID NO: 4385
aaatgaaagtaaagatcat
8118
8137
1
4


 


SEQ ID NO: 3046
accatggagcagttaactc
1610
1629
SEQ ID NO: 4386
gagtaaaccaaaacttggt
9024
9043
1
4


 


SEQ ID NO: 3047
gcagttaactccagaactc
1618
1637
SEQ ID NO: 4387
gagttactgaaaaagctgc
13727
13746
1
4


 


SEQ ID NO: 3048
cagaactcaagtcttcaat
1629
1648
SEQ ID NO: 4388
attggatatccaagatctg
1933
1952
1
4


 


SEQ ID NO: 3049
caggctctgcggaaaatgg
1703
1722
SEQ ID NO: 4389
ccatgacctccagctcctg
2485
2504
1
4


 


SEQ ID NO: 3050
ccaggaggttcttcttcag
1738
1757
SEQ ID NO: 4390
ctgaaatacaatgctctgg
5519
5538
1
4


 


SEQ ID NO: 3051
ggttcttcttcagactttc
1744
1763
SEQ ID NO: 4391
gaaaaacttggaaacaacc
4439
4458
1
4


 


SEQ ID NO: 3052
tttccttgatgatgcttct
1759
1778
SEQ ID NO: 4392
agaatccagatacaagaaa
6893
6912
1
4


 


SEQ ID NO: 3053
ggagataagcgactggctg
1781
1800
SEQ ID NO: 4393
cagcatgcctagtttctcc
9952
9971
1
4


 


SEQ ID NO: 3054
gctgcctatcttatgttga
1796
1815
SEQ ID NO: 4394
tcaatatcaaaagcccagc
12045
12064
1
4


 


SEQ ID NO: 3055
actttgtggcttcccatat
1890
1909
SEQ ID NO: 4395
atatctggaaccttgaagt
10737
10756
1
4


 


SEQ ID NO: 3056
gccaatatcttgaactcag
1910
1929
SEQ ID NO: 4396
ctgaactcagaaggatggc
14000
14019
1
4


 


SEQ ID NO: 3057
aatatcttgaactcagaag
1913
1932
SEQ ID NO: 4397
cttccattctgaatatatt
13378
13397
1
4


 


SEQ ID NO: 3058
ctcagaagaattggatatc
1924
1943
SEQ ID NO: 4398
gataaaagattactttgag
7273
7292
1
4


 


SEQ ID NO: 3059
aagaattggatatccaaga
1929
1943
SEQ ID NO: 4399
tcttcaatttattcttctt
13825
13844
1
4


 


SEQ ID NO: 3060
agaattggatatccaagat
1930
1949
SEQ ID NO: 4400
atcttcaatttattcttct
13824
13843
1
4


 


SEQ ID NO: 3061
tggatatccaagatctgaa
1935
1954
SEQ ID NO: 4401
ttcacataccagaattcca
8325
8344
1
4


 


SEQ ID NO: 3062
atatccaagatctgaaaaa
1938
1957
SEQ ID NO: 4402
tttttaaccagtcagatat
10185
10204
1
4


 


SEQ ID NO: 3063
tatccaagatctgaaaaag
1939
1958
SEQ ID NO: 4403
ctttttaaccagtcagata
10184
10203
1
4


 


SEQ ID NO: 3064
caagatctgaaaaagttag
1943
1962
SEQ ID NO: 4404
ctaaattcccatggtcttg
4973
4992
1
4


 


SEQ ID NO: 3065
aagatctgaaaaagttagt
1944
1963
SEQ ID NO: 4405
actaaattcccatggtctt
4972
4991
1
4


 


SEQ ID NO: 3066
tgaaaaagttagtgaaaga
1950
1969
SEQ ID NO: 4406
tctttctcgggaatattca
10630
10649
1
4


 


SEQ ID NO: 3067
tccaactgtcatggacttc
1990
2009
SEQ ID NO: 4407
gaagcacatatgaactgga
13945
13964
1
4


 


SEQ ID NO: 3068
tcagaaaattctctcggaa
2007
2026
SEQ ID NO: 4408
ttcctttaacaattcctga
9501
9620
1
4


 


SEQ ID NO: 3069
ttccatcacttgacccagc
2052
2071
SEQ ID NO: 4409
gctgacatagggaatggaa
8441
8460
1
4


 


SEQ ID NO: 3070
cccagcctcagccaaaata
2065
2084
SEQ ID NO: 4410
tattctatccaagattggg
7820
7839
1
4


 


SEQ ID NO: 3071
agcctcagccaaaatagaa
2068
2087
SEQ ID NO: 4411
ttctatccaagattgggct
7822
7841
1
4


 


SEQ ID NO: 3072
atcttatatttgatccaaa
2091
2110
SEQ ID NO: 4412
tttgaaaaacaaagcagat
11821
11840
1
4


 


SEQ ID NO: 3073
tcttatatttgatccaaat
2092
2111
SEQ ID NO: 4413
attttttgcaagttaaaga
14019
14038
1
4


 


SEQ ID NO: 3074
cttcctaaagaaagcatgc
2117
2136
SEQ ID NO: 4414
gcatggcattatgatgaag
3614
3633
1
4


 


SEQ ID NO: 3075
ctaaagaaagcatgctgaa
2121
2140
SEQ ID NO: 4415
ttcagggtgtggagtttag
5694
5713
1
4


 


SEQ ID NO: 3076
taaagaaagcatgctgaaa
2122
2141
SEQ ID NO: 4416
tttcttaaacattccttta
9490
9509
1
4


 


SEQ ID NO: 3077
gagattggcttggaaggaa
2183
2202
SEQ ID NO: 4417
ttccctccattaagttctc
11709
11728
1
4


 


SEQ ID NO: 3078
ctttgagccaacattggaa
2206
2225
SEQ ID NO: 4418
ttccaatgaccaagaaaag
11068
11087
1
4


 


SEQ ID NO: 3079
cagacagtgtcaacaaagc
2253
2272
SEQ ID NO: 4419
gcttactggacgaactctg
6142
6161
1
4


 


SEQ ID NO: 3080
cagtgtcaacaaagctttg
2257
2278
SEQ ID NO: 4420
caaattcctggatacactg
9857
9876
1
4


 


SEQ ID NO: 3081
agtgtcaacaaagctttgt
2258
2277
SEQ ID NO: 4421
acaagaatacgtctacact
4359
4378
1
4


 


SEQ ID NO: 3082
ctgatggtgtctctaaggt
2298
2317
SEQ ID NO: 4422
acctcggaacaatcctcag
3333
3352
1
4


 


SEQ ID NO: 3083
tgatggtgtctctaaggtc
2299
2318
SEQ ID NO: 4423
gacctgcgcaacgagatca
8831
8860
1
4


 


SEQ ID NO: 3084
aaacatgagcaggatatgg
2351
2370
SEQ ID NO: 4424
ccatgatctacatttgttt
6796
6815
1
4


 


SEQ ID NO: 3085
gaagctgattaaagatttg
2395
2414
SEQ ID NO: 4425
caaaaacattttcaacttc
5287
5306
1
4


 


SEQ ID NO: 3086
aaagatttgaaatccaaag
2405
2424
SEQ ID NO: 4426
ctttaagttcagcatcttt
7614
7633
1
4


 


SEQ ID NO: 3087
gatgggtgcccgcactctg
2518
2537
SEQ ID NO: 4427
cagatttgaggattccatc
7983
8002
1
4


 


SEQ ID NO: 3088
gggatcccccagatgattg
2540
2559
SEQ ID NO: 4428
caatcacaagtcgattccc
9083
9102
1
4


 


SEQ ID NO: 3089
ttttcttcactacatcttc
2593
2612
SEQ ID NO: 4429
gaagtgtcagtggcaaaaa
10382
10401
1
4


 


SEQ ID NO: 3090
tcttcactacatcttcatg
2596
2615
SEQ ID NO: 4430
catggcattatgatgaaga
3615
3634
1
4


 


SEQ ID NO: 3091
tacatcttcatggagaatg
2603
2622
SEQ ID NO: 4431
cattatggaggcccatgta
9445
9464
1
4


 


SEQ ID NO: 3092
ttcatggagaatgcctttg
2609
2628
SEQ ID NO: 4432
caaaatcaactttaatgaa
6607
6626
1
4


 


SEQ ID NO: 3093
tcatggagaatgcctttga
2610
2629
SEQ ID NO: 4433
tcaacacaatcttcaatga
13116
13135
1
4


 


SEQ ID NO: 3094
tttgaactccccactggag
2624
2643
SEQ ID NO: 4434
ctccccaggacctttcaaa
9842
9861
1
4


 


SEQ ID NO: 3095
ttgaactccccactggagc
2625
2644
SEQ ID NO: 4435
gctccccaggacctttcaa
9841
9880
1
4


 


SEQ ID NO: 3096
tgaactccccactggagct
2626
2645
SEQ ID NO: 4436
agctccccaggacctttca
9840
9859
1
4


 


SEQ ID NO: 3097
cactggagctggattacag
2635
2654
SEQ ID NO: 4437
ctgtttctgagtcccagtg
9344
9363
1
4


 


SEQ ID NO: 3098
actggagctggattacagt
2636
2655
SEQ ID NO: 4438
actgtttctgagtcccagt
9343
9352
1
4


 


SEQ ID NO: 3099
agttgcaaatatcttcatc
2652
2671
SEQ ID NO: 4439
gatgatgccaaaatcaact
6599
6618
1
4


 


SEQ ID NO: 3100
gttgcaaatatcttcatct
2653
2672
SEQ ID NO: 4440
agatgatgccaaaatcaac
6598
6617
1
4


 


SEQ ID NO: 3101
aaatatcttcatctggagt
2658
2677
SEQ ID NO: 4441
actcagaaggatggcattt
14004
14023
1
4


 


SEQ ID NO: 3102
taaaactggaagtagccaa
2703
2722
SEQ ID NO: 4442
ttggttacaggaggcttta
7600
7619
1
4


 


SEQ ID NO: 3103
ggctgaactggtggcaaaa
2728
2747
SEQ ID NO: 4443
ttttcttttcagcccagcc
9228
9247
1
4


 


SEQ ID NO: 3104
tgtggagtttgtgacaaat
2758
2777
SEQ ID NO: 4444
attttcaagcaaatgcaca
8538
8557
1
4


 


SEQ ID NO: 3105
ttgtgacaaatatgggcat
2766
2785
SEQ ID NO: 4445
atgcgtctaccttacacaa
8521
9540
1
4


 


SEQ ID NO: 3106
atgaacaccaacttcttcc
2819
2838
SEQ ID NO: 4446
ggaagctgaagtttatcat
2877
2896
1
4


 


SEQ ID NO: 3107
cttccacgagtcgggtctg
2833
2852
SEQ ID NO: 4447
cagagctatcactgggaag
5235
5254
1
4


 


SEQ ID NO: 3108
gagtcgggtctggaggctc
2840
2859
SEQ ID NO: 4448
gagcttactggacgaactc
6140
6159
1
4


 


SEQ ID NO: 3109
cctaaaagctgggaagctg
2866
2885
SEQ ID NO: 4449
cagcctccccagccgtagg
12120
12139
1
4


 


SEQ ID NO: 3110
agctgggaagctgaagttt
2872
2891
SEQ ID NO: 4450
aaactgttaatttacagct
5463
5482
1
4


 


SEQ ID NO: 3111
ccagattagagctggaact
3114
3133
SEQ ID NO: 4451
agtttccggggaaacctgg
12726
12745
1
4


 


SEQ ID NO: 3112
ggataccctgaagtttgta
3208
3227
SEQ ID NO: 4452
tacagtattctgaaaatcc
8393
8412
1
4


 


SEQ ID NO: 3113
ctgaggctaccatgacatt
3252
3271
SEQ ID NO: 4453
aatgagctcatggcttcag
3817
3836
1
4


 


SEQ ID NO: 3114
tgtccagtgaagtccaaat
3297
3316
SEQ ID NO: 4454
attttgagaggaatcgaca
6357
6376
1
4


 


SEQ ID NO: 3115
aattccggattttgatgtt
3313
3332
SEQ ID NO: 4455
aacacatgaatcacaaatt
8938
8957
1
4


 


SEQ ID NO: 3116
ttccggattttgatgttga
3315
3334
SEQ ID NO: 4456
tcaaaacgagcttcaggaa
13207
13226
1
4


 


SEQ ID NO: 3117
cggaacaatcctcagagtt
3337
3356
SEQ ID NO: 4457
aacttgtacaactggtccg
4211
4230
1
4


 


SEQ ID NO: 3118
tcctcagagttaatgatga
3345
3364
SEQ ID NO: 4458
tcatcaattggttacagga
7593
7612
1
4


 


SEQ ID NO: 3119
ctcaccctggacattcaga
3392
3411
SEQ ID NO: 4459
tctgcagaacaatgctgag
12439
12458
1
4


 


SEQ ID NO: 3120
cattcagaacaagaaaatt
3403
3422
SEQ ID NO: 4460
aattgactttgtagaaatg
8104
8123
1
4


 


SEQ ID NO: 3121
actgaggtcgccctcatgg
3422
3441
SEQ ID NO: 4461
ccatgcaagtcagcccagt
10924
10943
1
4


 


SEQ ID NO: 3122
ttatttccataccccgttt
3486
3505
SEQ ID NO: 4462
aaactgcctatattgataa
13880
13899
1
4


 


SEQ ID NO: 3123
gtttgcaagcagaagccag
3501
3520
SEQ ID NO: 4463
ctggacttctcttcaaaac
5408
5427
1
4


 


SEQ ID NO: 3124
tttgcaagcagaagccaga
3502
3521
SEQ ID NO: 4464
tctgggtgtcgacagcaaa
5272
5291
1
4


 


SEQ ID NO: 3125
ttgcaagcagaagccagaa
3503
3522
SEQ ID NO: 4465
ttctgggtgtcgacagcaa
5271
5290
1
4


 


SEQ ID NO: 3126
ctgcttctccaaatggact
3554
3573
SEQ ID NO: 4466
agtcaagattgatgggcag
4567
4586
1
4


 


SEQ ID NO: 3127
tgctacagcttatggctcc
3577
3598
SEQ ID NO: 4467
ggaggctttaagttcagca
7809
7628
1
4


 


SEQ ID NO: 3128
acagcttatggctccacag
3581
3600
SEQ ID NO: 4468
ctgtatagcaaattcctgt
5897
5916
1
4


 


SEQ ID NO: 3129
tttccaagagggtggcatg
3600
3619
SEQ ID NO: 4469
catggacttcttctggaaa
8877
8896
1
4


 


SEQ ID NO: 3130
ccaagagggtggcatggca
3603
3622
SEQ ID NO: 4470
tgcccagcaagcaagttgg
9361
9380
1
4


 


SEQ ID NO: 3131
gtggcatggcattatgatg
3611
3630
SEQ ID NO: 4471
catccttaacaccttccac
8071
8090
1
4


 


SEQ ID NO: 3132
tgatgaagagaagattgaa
3625
3644
SEQ ID NO: 4472
ttcactgttcctgaaatca
7871
7890
1
4


 


SEQ ID NO: 3133
gaagagaagattgaatttg
3629
3648
SEQ ID NO: 4473
caaaaacattttcaacttc
5287
5306
1
4


 


SEQ ID NO: 3134
gagaagattgaatttgaat
3632
3651
SEQ ID NO: 4474
attcataatcccaactctc
8275
8297
1
4


 


SEQ ID NO: 3135
tttgaatggaacacaggca
3644
3663
SEQ ID NO: 4475
tgcctttgtgtacaccaaa
11236
11255
1
4


 


SEQ ID NO: 3136
aggcaccaatgtagatacc
3658
3677
SEQ ID NO: 4476
ggtaacctaaaaggagcct
5591
5810
1
4


 


SEQ ID NO: 3137
caaaaaaatgacttccaat
3676
3695
SEQ ID NO: 4477
attgaagtacctacttttg
8366
8385
1
4


 


SEQ ID NO: 3138
aaaaaaatgacttccaatt
3677
3696
SEQ ID NO: 4478
aattgaagtacctactttt
8365
8384
1
4


 


SEQ ID NO: 3139
aaaaaatgacttccaattt
3678
3697
SEQ ID NO: 4479
aaatccaatctcctctttt
8408
8425
1
4


 


SEQ ID NO: 3140
cagagtccctcaaacagac
3760
3779
SEQ ID NO: 4480
gtctgtgggattccatctg
4090
4109
1
4


 


SEQ ID NO: 3141
aaattaatagttgcaatga
3803
3822
SEQ ID NO: 4481
tcataagttcaatgaattt
13188
13205
1
4


 


SEQ ID NO: 3142
ttcaacctccagaacatgg
3809
3918
SEQ ID NO: 4482
ccattgaccagatgctgaa
8142
8161
1
4


 


SEQ ID NO: 3143
tgggattgccagacttcca
3915
3934
SEQ ID NO: 4483
tggaaatgggcctgcccca
8003
8922
1
4


 


SEQ ID NO: 3144
cagtttgaaaattgagatt
3994
4013
SEQ ID NO: 4484
aatcacaactcctccactg
9541
9560
1
4


 


SEQ ID NO: 3145
gaaaattgagattcctttg
4000
4019
SEQ ID NO: 4485
caaaactaccacacatttc
13694
13713
1
4


 


SEQ ID NO: 3146
tttgccttttggtggcaaa
4015
4034
SEQ ID NO: 4486
tttgagaggaatcgacaaa
6359
6378
1
4


 


SEQ ID NO: 3147
ctccagagatctaaagatg
4036
4055
SEQ ID NO: 4487
catcaattggttacaggag
7594
7613
1
4


 


SEQ ID NO: 3148
tctaaagatgttagagact
4045
4064
SEQ ID NO: 4488
agtccttcatgtccctaga
10033
10052
1
4


 


SEQ ID NO: 3149
ctgtgggattccatctgcc
4092
4111
SEQ ID NO: 4489
ggcattttgaaaaaaacag
9735
9754
1
4


 


SEQ ID NO: 3150
atctgccatctcgagagtt
4104
4123
SEQ ID NO: 4490
aactctcaaaccctaagat
8556
8575
1
4


 


SEQ ID NO: 3151
tctcgagagttccaagtcc
4112
4131
SEQ ID NO: 4491
ggacattcctctagcgaga
8215
8234
1
4


 


SEQ ID NO: 3152
agtccctacttttaccatt
4126
4145
SEQ ID NO: 4492
aatgaatacagccaggact
6086
6105
1
4


 


SEQ ID NO: 3153
acttttaccattcccaagt
4133
4152
SEQ ID NO: 4493
actttgtagaaatgaaagt
8109
8128
1
4


 


SEQ ID NO: 3154
cattcccaagttgtatcaa
4141
4160
SEQ ID NO: 4494
ttgaaggacttcaggaatg
12009
12028
1
4


 


SEQ ID NO: 3155
accacatgaaggctgactc
4284
4303
SEQ ID NO: 4495
gagtaaaccaaaacttggt
9024
9043
1
4


 


SEQ ID NO: 3156
tttcctacaatgtgcaagg
4317
4336
SEQ ID NO: 4496
cctttaacaattcctgaaa
9503
9522
1
4


 


SEQ ID NO: 3157
ctggagaaacaacatatga
4338
4357
SEQ ID NO: 4497
tcattctgggtctttccag
11035
11054
1
4


 


SEQ ID NO: 3158
atcatgtgatgggtctcta
4378
4397
SEQ ID NO: 4498
tagaattacagaaaatgat
6555
6584
1
4


 


SEQ ID NO: 3159
catgtgatgggtctctacg
4380
4399
SEQ ID NO: 4499
cgtaggcaccgtgggcatg
12133
12182
1
4


 


SEQ ID NO: 3160
ttctagattcgaatatcaa
4407
4428
SEQ ID NO: 4500
ttgatgatgctgtcaagaa
7308
7327
1
4


 


SEQ ID NO: 3161
tggggaccacagatgtctg
4499
4516
SEQ ID NO: 4501
cagaattccagcttcccca
8334
8353
1
4


 


SEQ ID NO: 3162
ctaacactggccggctcaa
4644
4663
SEQ ID NO: 4502
ttgaggctattgatgttag
6984
7003
1
4


 


SEQ ID NO: 3163
taacactggccggctcaat
4645
4664
SEQ ID NO: 4503
attgaggctattgatgtta
6983
7002
1
4


 


SEQ ID NO: 3164
aacactggccggctcaatg
4646
4665
SEQ ID NO: 4504
cattgaggctattgatgtt
6982
7001
1
4


 


SEQ ID NO: 3165
ctggccggctcaatggaga
4650
4669
SEQ ID NO: 4505
tctccatctgcgctaccag
12073
12092
1
4


 


SEQ ID NO: 3166
agataacaggaagatatga
4713
4732
SEQ ID NO: 4506
tcatctcctttcttcatct
10210
10229
1
4


 


SEQ ID NO: 3167
tccctcacctccacctctg
4745
4764
SEQ ID NO: 4507
cagatatatatctcaggga
8184
8203
1
4


 


SEQ ID NO: 3168
agctgactttaaaatctga
4818
4837
SEQ ID NO: 4508
tcaggctcttcagaaagct
7930
7949
1
4


 


SEQ ID NO: 3169
ctgactttaaaatctgaca
4820
4839
SEQ ID NO: 4509
tgtcaagataaacaatcag
8740
8759
1
4


 


SEQ ID NO: 3170
caagatggatatgaccttc
4873
4892
SEQ ID NO: 4510
gaagtagtactgcatcttg
6843
6862
1
4


 


SEQ ID NO: 3171
gctgcgttctgaatatcag
4909
4928
SEQ ID NO: 4511
ctgagtcccagtgcccagc
9350
9369
1
4


 


SEQ ID NO: 3172
cgttctgaatatcaggctg
4913
4932
SEQ ID NO: 4512
cagcaagtacctgagaacg
8611
8630
1
4


 


SEQ ID NO: 3173
aattcccatggtcttgagt
4976
4995
SEQ ID NO: 4513
actcagatcaaagttaatt
12272
12291
1
4


 


SEQ ID NO: 3174
tggtcttgagttaaatgct
4984
5003
SEQ ID NO: 4514
agcacagtacgaaaaacca
10809
10828
1
4


 


SEQ ID NO: 3175
cttgagttaaatgctgaca
4988
5007
SEQ ID NO: 4515
tgtccctagaaatctcaag
10042
10061
1
4


 


SEQ ID NO: 3176
ttgagttaaatgctgacat
4989
5008
SEQ ID NO: 4516
atgtccctagaaatctcaa
10041
10060
1
4


 


SEQ ID NO: 3177
tgagttaaatgctgacatc
4990
5009
SEQ ID NO: 4517
gatggaaccctctccctca
4733
4752
1
4


 


SEQ ID NO: 3178
acttgaagtgtagtctcct
5094
5113
SEQ ID NO: 4518
aggaaactcagatcaaagt
12267
12286
1
4


 


SEQ ID NO: 3179
agtgtagtctcctggtgct
5100
5119
SEQ ID NO: 4519
agcagccagtggcaccact
12514
12633
1
4


 


SEQ ID NO: 3180
gtgctggagaatgagctga
5114
5133
SEQ ID NO: 4520
tcagccaggtttatagcac
7734
7753
1
4


 


SEQ ID NO: 3181
ctggggcatctatgaaatt
5151
5170
SEQ ID NO: 4521
aatttctgattaccaccag
13579
13598
1
4


 


SEQ ID NO: 3182
atggccgcttcagggaaca
5178
5197
SEQ ID NO: 4522
tgttttttggaaatgccat
8649
8668
1
4


 


SEQ ID NO: 3183
ttcagtctggatgggaaag
5207
5226
SEQ ID NO: 4523
ctttgacaggcattttgaa
9727
9746
1
4


 


SEQ ID NO: 3184
ccatgattctgggtgtcga
5265
5284
SEQ ID NO: 4524
tcgatgcacatacaaatgg
5838
5857
1
4


 


SEQ ID NO: 3185
aaaacattttcaacttcaa
5289
5308
SEQ ID NO: 4525
ttgatgttagagtgctttt
6993
7012
1
4


 


SEQ ID NO: 3186
cttaagctctcaaatgaca
5324
5343
SEQ ID NO: 4526
tgtcctacaacaagttaag
7255
7274
1
4


 


SEQ ID NO: 3187
ttaagctctcaaatgacat
5325
5344
SEQ ID NO: 4527
atgtcctacaacaagttaa
7254
7273
1
4


 


SEQ ID NO: 3188
catgatgggctcatatgct
5341
5360
SEQ ID NO: 4528
agcatctttggctcacatg
7624
7643
1
4


 


SEQ ID NO: 3189
tgggctcatatgctgaaat
5346
5365
SEQ ID NO: 4529
atttatcaaaagaagccca
12942
12961
1
4


 


SEQ ID NO: 3190
actggacttctcttcaaaa
5407
5426
SEQ ID NO: 4530
ttttggcaagctatacagt
6380
8399
1
4


 


SEQ ID NO: 3191
acttctcttcaaaacttga
5412
5431
SEQ ID NO: 4531
tcaattgggagagacaagt
6504
6523
1
4


 


SEQ ID NO: 3192
ctgacaagttttataagca
5445
5464
SEQ ID NO: 4532
tgctttgtgagtttatcag
9693
9712
1
4


 


SEQ ID NO: 3193
aagttttataagcaaactg
5450
5469
SEQ ID NO: 4533
cagtcatgtagaaaaactt
4429
4448
1
4


 


SEQ ID NO: 3194
ctgttaatttacagctaca
5466
5485
SEQ ID NO: 4534
tgtactggaaaacgtacag
6388
6407
1
4


 


SEQ ID NO: 3195
ttacagctacagccctatt
5474
5493
SEQ ID NO: 4535
aatattgatcaatttgtaa
6425
6444
1
4


 


SEQ ID NO: 3196
tctggtaactactttaaac
5494
5513
SEQ ID NO: 4536
gtttgaaaaacaaagcaga
11820
11839
1
4


 


SEQ ID NO: 3197
tttaaacagtgacctgaaa
5506
5525
SEQ ID NO: 4537
tttcatttgaaagaataaa
7032
7051
1
4


 


SEQ ID NO: 3198
ttaaacagtgacctgaaat
5507
5526
SEQ ID NO: 4538
atttcaagcaagaacttaa
10434
10453
1
4


 


SEQ ID NO: 3199
cagtgacctgaaatacaat
5512
5531
SEQ ID NO: 4539
attggcgtggagcttactg
6131
6150
1
4


 


SEQ ID NO: 3200
tgtggctggtaacctaaaa
5584
5603
SEQ ID NO: 4540
ttttgctggagaagccaca
10765
10784
1
4


 


SEQ ID NO: 3201
ttatcagcaagctataaag
5657
5676
SEQ ID NO: 4541
ctttgcactatgttcataa
12764
12783
1
4


 


SEQ ID NO: 3202
ggttcagggtgtggagttt
5692
5711
SEQ ID NO: 4542
aaacacctaagagtaaacc
9014
8033
1
4


 


SEQ ID NO: 3203
attcagactcactgcattt
5775
5794
SEQ ID NO: 4543
aaatgctgacatagggaat
8437
8456
1
4


 


SEQ ID NO: 3204
ttcagactcactgcatttc
5776
5795
SEQ ID NO: 4544
gaaatattatgaacttgaa
13312
13331
1
4


 


SEQ ID NO: 3205
tacaaatggcaatgggaaa
5848
5867
SEQ ID NO: 4545
tttcctaaagctggatgta
11176
11195
1
4


 


SEQ ID NO: 3206
gctgtatagcaaattcctg
5886
5915
SEQ ID NO: 4546
caggtccatgcaagtcagc
10919
10938
1
4


 


SEQ ID NO: 3207
tgagcagacaggcacctgg
6043
6062
SEQ ID NO: 4547
ccagcttccccacatctca
8341
8360
1
4


 


SEQ ID NO: 3208
ggcacctggaaactcaaga
6053
6072
SEQ ID NO: 4548
tcttcgtgtttcaactgcc
11221
11240
1
4


 


SEQ ID NO: 3209
tgaatacagccaggacttg
6088
6107
SEQ ID NO: 4549
caagtaagtgctaggttca
9380
9399
1
4


 


SEQ ID NO: 3210
gaatacagccaggacttgg
6089
6108
SEQ ID NO: 4550
ccaacacttacttgaattc
10668
10687
1
4


 


SEQ ID NO: 3211
ctggacgaactctggctga
6147
6166
SEQ ID NO: 4551
tcagaaagctaccttccag
7939
7958
1
4


 


SEQ ID NO: 3212
ttttactcagtgagcccat
6201
6220
SEQ ID NO: 4552
atggacttcttctggaaaa
8878
8897
1
4


 


SEQ ID NO: 3213
gatgagagatgccgttgag
6241
6260
SEQ ID NO: 4553
ctcatctcctttcttcatc
10209
10228
1
4


 


SEQ ID NO: 3214
aattgttgcttttgtaaag
6277
6296
SEQ ID NO: 4554
cttttctaaacttgaaatt
9064
9083
1
4


 


SEQ ID NO: 3215
cttttgtaaagtatgataa
6285
6304
SEQ ID NO: 4555
ttatgaacttgaagaaaag
13318
13337
1
4


 


SEQ ID NO: 3216
tttgtaaagtatgataaaa
6287
6306
SEQ ID NO: 4556
ttttcacattagatgcaaa
8421
8440
1
4


 


SEQ ID NO: 3217
tccattaacctcccatttt
6320
6339
SEQ ID NO: 4557
aaaattgatgatatctgga
10727
10746
1
4


 


SEQ ID NO: 3218
ccattaacctcccattttt
6321
6340
SEQ ID NO: 4558
aaaagggtcatggaaatgg
8893
8912
1
4


 


SEQ ID NO: 3219
cttgcaagaatattttgag
6346
6365
SEQ ID NO: 4559
ctcaattttgattttcaag
8528
8547
1
4


 


SEQ ID NO: 3220
agaatattttgagaggaat
6352
6371
SEQ ID NO: 4560
attccctccattaagttct
11708
11727
1
4


 


SEQ ID NO: 3221
attatagttgtactggaaa
6380
6399
SEQ ID NO: 4561
tttcaagcaagaacttaat
10435
10454
1
4


 


SEQ ID NO: 3222
gaagcacatcaatattgat
6415
6434
SEQ ID NO: 4562
atcagttcagataaacttc
7999
8018
1
4


 


SEQ ID NO: 3223
acatcaatattgatcaatt
6420
6439
SEQ ID NO: 4563
aattccctgaagttgatgt
11487
11506
1
4


 


SEQ ID NO: 3224
gaaaactcccacagcaagc
6465
6484
SEQ ID NO: 4564
gctttctcttccacatttc
10060
10079
1
4


 


SEQ ID NO: 3225
ctgaattcattcaattggg
6494
6513
SEQ ID NO: 4565
cccatttacagatcttcag
11371
11390
1
4


 


SEQ ID NO: 3226
tgaattcattcaattggga
6495
6514
SEQ ID NO: 4566
tcccatttacagatcttca
11370
11389
1
4


 


SEQ ID NO: 3227
aactgactgctctcacaaa
6540
6559
SEQ ID NO: 4567
tttgaggattccatcagtt
7987
8006
1
4


 


SEQ ID NO: 3228
aaaagtatagaattacaga
6558
6577
SEQ ID NO: 4568
tctggctccctcaactttt
9050
9069
1
4


 


SEQ ID NO: 3229
atcaactttaatgaaaaac
6611
6630
SEQ ID NO: 4569
gtttattgaaaatattgat
6811
6830
1
4


 


SEQ ID NO: 3230
tgatttgaaaatagctatt
6694
6713
SEQ ID NO: 4570
aatattattgatgaaatca
6715
6735
1
4


 


SEQ ID NO: 3231
atttgaaaatagctattgc
6696
6715
SEQ ID NO: 4571
gcaagaacttaatggaaat
10441
10460
1
4


 


SEQ ID NO: 3232
attgctaatattattgatg
6710
6729
SEQ ID NO: 4572
catcacactgaataccaat
10159
10178
1
4


 


SEQ ID NO: 3233
gaaaaattaaaaagtcttg
6737
6756
SEQ ID NO: 4573
caagagcttatgggatttc
11161
11180
1
4


 


SEQ ID NO: 3234
actatcatatccgtgtaat
6762
6781
SEQ ID NO: 4574
attactttgagaaattagt
7281
7300
1
4


 


SEQ ID NO: 3235
tattgattttaacaaaagt
6823
6842
SEQ ID NO: 4575
acttgacttcagagaaata
11404
11423
1
4


 


SEQ ID NO: 3236
ctgcagcagcttaagagac
6914
6933
SEQ ID NO: 4576
gtcttcagtgaagctgcag
10699
10718
1
4


 


SEQ ID NO: 3237
aaaacaacacattgaggct
6973
6992
SEQ ID NO: 4577
agcctcacctcttactttt
10571
10590
1
4


 


SEQ ID NO: 3238
ttgagcatgtcaaacactt
7059
7078
SEQ ID NO: 4578
aagtagctgagaaaatcaa
7104
7123
1
4


 


SEQ ID NO: 3239
tttgaagtagctgagaaaa
7100
7119
SEQ ID NO: 4579
ttttcacattagatgcaaa
8421
8440
1
4


 


SEQ ID NO: 3240
ttagtagagttggcccacc
7199
7218
SEQ ID NO: 4580
ggtggactcttgctgctaa
7776
7795
1
4


 


SEQ ID NO: 3241
tgaaggagactattcagaa
7227
7246
SEQ ID NO: 4581
ttctcaattttgattttca
8526
8545
1
4


 


SEQ ID NO: 3242
gagactattcagaagctaa
7232
7251
SEQ ID NO: 4582
ttagccacagctctgtctc
10301
10320
1
4


 


SEQ ID NO: 3243
aattagttggatttattga
7293
7312
SEQ ID NO: 4583
tcaagaagcttaatgaatt
7320
7339
1
4


 


SEQ ID NO: 3244
gcttaatgaattatctttt
7327
7346
SEQ ID NO: 4584
aaaacgagcttcaggaagc
13209
13228
1
4


 


SEQ ID NO: 3245
ttaacaaattccttgacat
7365
7384
SEQ ID NO: 4585
atgtcctacaacaagttaa
7254
7273
1
4


 


SEQ ID NO: 3246
aaattaaagtcatttgatt
7394
7413
SEQ ID NO: 4586
aatcctttgacaggcattt
9723
9742
1
4


 


SEQ ID NO: 3247
gactcaatggtgaaattca
7464
7488
SEQ ID NO: 4587
tgaaattcaatcacaagtc
9076
9095
1
4


 


SEQ ID NO: 3248
gaaattcaggctctggaac
7475
7494
SEQ ID NO: 4588
gttctcaattttgattttc
8525
8544
1
4


 


SEQ ID NO: 3249
actaccacaaaaagctgaa
7492
7511
SEQ ID NO: 4589
ttcaggaactattgctagt
10645
10664
1
4


 


SEQ ID NO: 3250
ccaaaataaccttaatcat
7578
7597
SEQ ID NO: 4590
atgatttccctgaccttgg
10950
10969
1
4


 


SEQ ID NO: 3251
aaataaccttaatcatcaa
7581
7600
SEQ ID NO: 4591
ttgaagtaaaagaaaattt
10749
10768
1
4


 


SEQ ID NO: 3252
tttaagttcagcatctttg
7615
7634
SEQ ID NO: 4592
caaatctggatttcttaaa
9480
9499
1
4


 


SEQ ID NO: 3253
caggtttatagcacacttg
7739
7758
SEQ ID NO: 4593
caagggttcactgttcctg
7865
7884
1
4


 


SEQ ID NO: 3254
gttcactgttcctgaaatc
7870
7889
SEQ ID NO: 4594
gattctcagatgagggaac
8922
8941
1
4


 


SEQ ID NO: 3255
cactgttcctgaaatcaag
7873
7892
SEQ ID NO: 4595
cttgaacacaaagtcagtg
6008
6027
1
4


 


SEQ ID NO: 3256
actgttcctgaaatcaaga
7874
7893
SEQ ID NO: 4596
tcttgaacacaaagtcagt
6007
6026
1
4


 


SEQ ID NO: 3257
gcctgcctttgaagtcagt
7909
7928
SEQ ID NO: 4597
actgttgactcaggaaggc
12580
12599
1
4


 


SEQ ID NO: 3258
taacagatttgaggattcc
7980
7999
SEQ ID NO: 4598
ggaagcttctcaagagtta
13222
13241
1
4


 


SEQ ID NO: 3259
gttttccacaccagaattt
8050
8069
SEQ ID NO: 4599
aaatttctctgctggaaac
9418
9437
1
4


 


SEQ ID NO: 3260
tcagaaccattgaccagat
8136
8155
SEQ ID NO: 4600
atctgcagaacaatgctga
12438
12457
1
4


 


SEQ ID NO: 3261
tagcgagaatcaccctgcc
8226
8245
SEQ ID NO: 4601
ggcagcttctggcttgcta
12301
12320
1
4


 


SEQ ID NO: 3262
ccttaatgattttcaagtt
8299
8318
SEQ ID NO: 4602
aactgttgactcaggaagg
12579
12598
1
4


 


SEQ ID NO: 3263
acataccagaattccagct
8328
8347
SEQ ID NO: 4603
agctgccagtccttcatgt
10026
10045
1
4


 


SEQ ID NO: 3264
aatgctgacatagggaatg
8438
8457
SEQ ID NO: 4604
cattaatcctgccatcatt
10005
10024
1
4


 


SEQ ID NO: 3265
atgctgacatagggaatgg
8439
8458
SEQ ID NO: 4605
ccatttgagatcacggcat
9245
9264
1
4


 


SEQ ID NO: 3266
aaccacctcagcaaacgaa
8458
8477
SEQ ID NO: 4606
ttcgttttccattaaggtt
9291
9310
1
4


 


SEQ ID NO: 3267
agcaggtatcgcagcttcc
8476
8495
SEQ ID NO: 4607
ggaagtggccctgaatgct
10972
10991
1
4


 


SEQ ID NO: 3268
tgcacaactctcaaaccct
8551
8570
SEQ ID NO: 4608
agggaaagagaagattgca
13501
13520
1
4


 


SEQ ID NO: 3269
aggagtcagtgaagttctc
8592
8611
SEQ ID NO: 4609
gagaacttactatcatcct
13788
13807
1
4


 


SEQ ID NO: 3270
tttttggaaatgccattga
8652
8671
SEQ ID NO: 4610
tcaatgaatttattcaaaa
13194
13213
1
4


 


SEQ ID NO: 3271
aatggagtgattgtcaaga
8729
8748
SEQ ID NO: 4611
tcttttcagcccagccatt
9231
9250
1
4


 


SEQ ID NO: 3272
gtcaagataaacaatcagc
8741
8760
SEQ ID NO: 4612
gctgactttaaaatctgac
4819
4838
1
4


 


SEQ ID NO: 3273
tccacaaattgaacatccc
8787
8806
SEQ ID NO: 4613
gggatttcctaaagctgga
11172
11191
1
4


 


SEQ ID NO: 3274
ttgaacatccccaaactgg
8795
8814
SEQ ID NO: 4614
ccagtttccagggactcaa
12603
12622
1
4


 


SEQ ID NO: 3275
acatccccaaactggactt
8799
8818
SEQ ID NO: 4615
aagtcgattcccagcatgt
9090
9109
1
4


 


SEQ ID NO: 3276
acttctctagtcaggctga
8814
8833
SEQ ID NO: 4616
tcagatggaaaaatgaagt
11010
11029
1
4


 


SEQ ID NO: 3277
tgaatcacaaattagtttc
8944
8963
SEQ ID NO: 4617
gaaagtccataatggttca
12817
12836
1
4


 


SEQ ID NO: 3278
agaaggacccctcacttcc
8968
8987
SEQ ID NO: 4618
ggaagaagaggcagcttct
12292
12311
1
4


 


SEQ ID NO: 3279
ttggactgtccaataagat
8988
9007
SEQ ID NO: 4619
atctaaatgcagtagccaa
11634
11653
1
4


 


SEQ ID NO: 3280
actgtccaataagatcaat
8992
9011
SEQ ID NO: 4620
attgataaaaccatacagt
13891
13910
1
4


 


SEQ ID NO: 3281
ctgtccaataagatcaata
8993
9012
SEQ ID NO: 4621
tattgataaaaccatacag
13890
13909
1
4


 


SEQ ID NO: 3282
gtttatgaatctggctccc
9041
9060
SEQ ID NO: 4622
gggaatctgatgaggaaac
12255
12274
1
4


 


SEQ ID NO: 3283
atgaatctggctccctcaa
9045
9064
SEQ ID NO: 4623
ttgagttgcccaccatcat
11667
11686
1
4


 


SEQ ID NO: 3284
ctcaacttttctaaacttg
9059
9078
SEQ ID NO: 4624
caagatcgcagactttgag
11653
11672
1
4


 


SEQ ID NO: 3285
ctaaaggcatggcactgtt
9129
9148
SEQ ID NO: 4625
aacagaaacaatgcattag
9749
9768
1
4


 


SEQ ID NO: 3286
aaggcatggcactgtttgg
9132
9151
SEQ ID NO: 4626
ccaagaaaaggcacacctt
11077
11096
1
4


 


SEQ ID NO: 3287
atccacaaacaatgaaggg
9262
9281
SEQ ID NO: 4627
ccctaacagatttgaggat
7977
7996
1
4


 


SEQ ID NO: 3288
ggaatttgaaagttcgttt
9279
9298
SEQ ID NO: 4628
aaacaaacacaggcattcc
9655
9674
1
4


 


SEQ ID NO: 3289
aataactatgcactgtttc
9332
9351
SEQ ID NO: 4629
gaaatactgttttcctatt
12836
12855
1
4


 


SEQ ID NO: 3290
gaaacaacgagaacattat
9432
9451
SEQ ID NO: 4630
ataaactgcaagatttttc
13608
13627
1
4


 


SEQ ID NO: 3291
ttcttgaaaacgacaaagc
9599
9618
SEQ ID NO: 4631
gctttccaatgaccaagaa
11065
11084
1
4


 


SEQ ID NO: 3292
ataagaaaaacaaacacag
9648
9667
SEQ ID NO: 4632
ctgtgctttgtgagtttat
9690
9709
1
4


 


SEQ ID NO: 3293
aaaacaaacacaggcattc
9654
9673
SEQ ID NO: 4633
gaatttgaaagttcgtttt
9280
9299
1
4


 


SEQ ID NO: 3294
gcattccatcacaaatcct
9667
9686
SEQ ID NO: 4634
aggaagtggccctgaatgc
10971
10990
1
4


 


SEQ ID NO: 3295
tttgaaaaaaacagaaaca
9740
9759
SEQ ID NO: 4635
tgttgaaagatttatcaaa
12933
12952
1
4


 


SEQ ID NO: 3296
caatgcattagattttgtc
9757
9776
SEQ ID NO: 4636
gacaagaaaaaggggattg
10279
10298
1
4


 


SEQ ID NO: 3297
caaagctgaaaaatctcag
9817
9836
SEQ ID NO: 4637
ctgagaacttcatcatttg
11438
11457
1
4


 


SEQ ID NO: 3298
cctggatacactgttccag
9863
9882
SEQ ID NO: 4638
ctggacttctctagtcagg
8810
8829
1
4


 


SEQ ID NO: 3299
gttgaagtgtctccattca
9890
9909
SEQ ID NO: 4639
tgaatctggctccctcaac
9046
9065
1
4


 


SEQ ID NO: 3300
tttctccatcctaggttct
9964
9983
SEQ ID NO: 4640
agaatccagatacaagaaa
6893
6912
1
4


 


SEQ ID NO: 3301
ttctccatcctaggttctg
9965
9984
SEQ ID NO: 4641
cagaatccagatacaagaa
6892
6911
1
4


 


SEQ ID NO: 3302
tcattagagctgccagtcc
10019
10038
SEQ ID NO: 4642
ggacagtgaaatattatga
13305
13324
1
4


 


SEQ ID NO: 3303
tgctgaactttttaaccag
10177
10196
SEQ ID NO: 4643
ctggatgtaaccaccagca
11186
11205
1
4


 


SEQ ID NO: 3304
ctcctttcttcatcttcat
10214
10233
SEQ ID NO: 4644
atgaagcttgctccaggag
13772
13791
1
4


 


SEQ ID NO: 3305
tgtcattgatgcactgcag
10234
10253
SEQ ID NO: 4645
ctgcgctaccagaaagaca
12080
12099
1
4


 


SEQ ID NO: 3306
tgatgcactgcagtacaaa
10240
10259
SEQ ID NO: 4646
tttgagttgcccaccatca
11666
11685
1
4


 


SEQ ID NO: 3307
agctctgtctctgagcaac
10309
10328
SEQ ID NO: 4647
gttgaccacaagcttagct
10547
10566
1
4


 


SEQ ID NO: 3308
agccgaaattccaattttg
10408
10427
SEQ ID NO: 4648
caaagctggcaccagggct
13971
13990
1
4


 


SEQ ID NO: 3309
ttgagaatgaatttcaagc
10424
10443
SEQ ID NO: 4649
gcttcaggaagcttctcaa
13216
13235
1
4


 


SEQ ID NO: 3310
aaacctactgtctcttcct
10469
10488
SEQ ID NO: 4650
aggaaggccaagccagttt
12591
12610
1
4


 


SEQ ID NO: 3311
tacttttccattgagtcat
10583
10602
SEQ ID NO: 4651
atgattatgtcaacaagta
12363
12382
1
4


 


SEQ ID NO: 3312
tcaggtccatgcaagtcag
10918
10937
SEQ ID NO: 4652
ctgacatcttaggcactga
5001
5020
1
4


 


SEQ ID NO: 3313
atgcaagtcagcccagttc
10926
10945
SEQ ID NO: 4653
gaactcagaaggatggcat
14002
14021
1
4


 


SEQ ID NO: 3314
tgaatgctaacactaagaa
10983
11002
SEQ ID NO: 4654
ttctcaattttgattttca
8526
8545
1
4


 


SEQ ID NO: 3315
agaagatcagatggaaaaa
11004
11023
SEQ ID NO: 4655
ttttctaaatggaacttct
12173
12192
1
4


 


SEQ ID NO: 3316
ggctattcattctccatcc
11264
11283
SEQ ID NO: 4656
ggatctaaatgcagtagcc
11632
11651
1
4


 


SEQ ID NO: 3317
aaagttttggctgataaat
11288
11307
SEQ ID NO: 4657
atttcttaaacattccttt
9489
9508
1
4


 


SEQ ID NO: 3318
agttttggctgataaattc
11290
11309
SEQ ID NO: 4658
gaatctggctccctcaact
9047
9066
1
4


 


SEQ ID NO: 3319
ctgggctgaaactaaatga
11316
11335
SEQ ID NO: 4659
tcattctgggtctttccag
11035
11054
1
4


 


SEQ ID NO: 3320
cagagaaatacaaatctat
11413
11432
SEQ ID NO: 4660
atagcatggacttcttctg
8873
8892
1
4


 


SEQ ID NO: 3321
gaggtaaaattccctgaag
11480
11499
SEQ ID NO: 4662
cttctggcttgctaacctc
12306
12325
1
4


 


SEQ ID NO: 3322
cttttttgagataaccgtg
11545
11564
SEQ ID NO: 4663
cacggagttactgaaaaag
13723
13742
1
4


 


SEQ ID NO: 3323
gctggaattgtcattcctt
11735
11754
SEQ ID NO: 4664
aaggcatctccacctcagc
12102
12121
1
4


 


SEQ ID NO: 3324
gtgtataatgccacttgga
11795
11814
SEQ ID NO: 4665
tccaagatgagatcaacac
13104
13123
1
4


 


SEQ ID NO: 3325
attccacatgcagctcaac
11859
11878
SEQ ID NO: 5668
gttgagaagccccaagaat
6254
6273
1
4


 


SEQ ID NO: 3326
tgaagaagatggcaaattt
11992
12011
SEQ ID NO: 4667
aaattctcttttcttttca
9220
9239
1
4


 


SEQ ID NO: 3327
atcaaaagcccagcgttca
12050
12069
SEQ ID NO: 4668
tgaaagtcaagcatctgat
12669
12688
1
4


 


SEQ ID NO: 3328
gtgggcatggatatggatg
12143
12162
SEQ ID NO: 4669
catccttaacaccttccac
8071
8090
1
4


 


SEQ ID NO: 3329
aaatggaacttctactaca
12179
12198
SEQ ID NO: 4670
tgtaccataagccatattt
10088
10107
1
4


 


SEQ ID NO: 3330
aaaaactcaccatattcaa
12219
12238
SEQ ID NO: 4671
ttgatgttagagtgctttt
6993
7012
1
4


 


SEQ ID NO: 3331
ctgagaagaaatctgcaga
12428
12447
SEQ ID NO: 4672
tctgcacagaaatattcag
13447
13466
1
4


 


SEQ ID NO: 3332
acaatgctgagtgggttta
12447
12466
SEQ ID NO: 4673
taaatggagtctttattgt
14086
14105
1
4


 


SEQ ID NO: 3333
caatgctgagtgggtttat
12448
12467
SEQ ID NO: 4674
ataaatggagtctttattg
14085
14104
1
4


 


SEQ ID NO: 3334
ttaggcaaattgatgatat
12477
12496
SEQ ID NO: 4675
atattgtcagtgcctctaa
13392
13411
1
4


 


SEQ ID NO: 3335
ataaactaatagatgtaat
12897
12916
SEQ ID NO: 4676
attactatgaaaaatttat
13641
13660
1
4


 


SEQ ID NO: 3336
ccaactaatagaagataac
13039
13058
SEQ ID NO: 4677
gttattttgctaaacttgg
14052
14071
1
4


 


SEQ ID NO: 3337
ttaattatatccaagatga
13095
13114
SEQ ID NO: 4678
tcatcctctaattttttaa
13800
13819
1
4


 


SEQ ID NO: 3338
tttaaattgttgaaagaaa
13151
13170
SEQ ID NO: 4679
tttcatttgaaagaataaa
7032
7051
1
4


 


SEQ ID NO: 3339
aagttcaatgaatttattc
13190
13209
SEQ ID NO: 4680
gaataccaatgctgaactt
10168
10187
1
4


 


SEQ ID NO: 3340
ttgaagaaaagatagtcag
13326
13345
SEQ ID NO: 4681
ctgagagaagtgtcttcaa
12407
12426
1
4


 


SEQ ID NO: 3341
acttccattctgaatatat
13377
13396
SEQ ID NO: 4682
atatctggaaccttgaagt
10737
10756
1
4


 


SEQ ID NO: 3342
cacagaaatattcaggaat
13451
13470
SEQ ID NO: 4683
attccctgaagttgatgtg
11488
11507
1
4


 


SEQ ID NO: 3343
ccattgcgacgaagaaaat
13560
13579
SEQ ID NO: 4684
atttttattcctgccatgg
10103
10122
1
4


 


SEQ ID NO: 3344
tataaactgcaagattttt
13607
13626
SEQ ID NO: 4685
aaaattcaaactgcctata
13873
13892
1
4


 


SEQ ID NO: 3345
tctgattactatgaaaaat
13637
13656
SEQ ID NO: 4686
atttgtaagaaaatacaga
6436
6455
1
4


 


SEQ ID NO: 3346
ggagttactgaaaaagctg
13726
13745
SEQ ID NO: 4687
cagcatgcctagtttctcc
9952
9971
1
4


 


SEQ ID NO: 3347
tgaagcttgctccaggaga
13773
13792
SEQ ID NO: 4688
tctcctttcttcatcttca
10213
10232
1
4


 


SEQ ID NO: 3348
tgaactggacctgcaccaa
13955
13974
SEQ ID NO: 4689
ttggtagagcaagggttca
7856
7875
1
4


 


SEQ ID NO: 3349
ttgctaaacttgggggagg
14058
14077
SEQ ID NO: 4690
cctcctacagtggtggcaa
4230
4249
1
4


 


SEQ ID NO: 3350
gattcgaatatcaaattca
4412
4431
SEQ ID NO: 4691
tgaaaacgacaaagcaatc
9603
9622
3
3


 


SEQ ID NO: 3351
atttgtttgtcaaagaagt
4551
4570
SEQ ID NO: 4692
acttttctaaacttgaaat
9063
9082
3
3


 


SEQ ID NO: 3352
tctcggttgctgccgctga
33
52
SEQ ID NO: 4693
tcagcccagccatttgaga
9236
9255
2
3


 


SEQ ID NO: 3353
gctgaggagcccgcccagc
47
66
SEQ ID NO: 4694
gctggatgtaaccaccagc
11185
11204
2
3


 


SEQ ID NO: 3354
ctggtctgtccaaaagatg
227
246
SEQ ID NO: 4695
catcagaaccattgaccag
8134
8153
2
3


 


SEQ ID NO: 3355
ctgagagttccagtggagt
291
310
SEQ ID NO: 4696
actcaatggtgaaattcag
7465
7484
2
3


 


SEQ ID NO: 3356
cagtgcaccctgaaagagg
404
423
SEQ ID NO: 4697
cctcacttcctttggactg
8977
8996
2
3


 


SEQ ID NO: 3357
ctctgaggagtttgctgca
472
491
SEQ ID NO: 4698
tgcaaacttgacttcagag
11399
11418
2
3


 


SEQ ID NO: 3358
acatcaagaggggcatcat
582
601
SEQ ID NO: 4699
atgacgttcttgagcatgt
7050
7069
2
3


 


SEQ ID NO: 3359
ctgatcagcagcagccagt
830
849
SEQ ID NO: 4700
actggacttctctagtcag
8809
8828
2
3


 


SEQ ID NO: 3360
ggacgctaagaggaagcat
865
884
SEQ ID NO: 4701
atgcctacgttccatgtcc
11354
11373
2
3


 


SEQ ID NO: 3361
agctgttttgaagactctc
1087
1106
SEQ ID NO: 4702
gagaagtgtcttcaaagct
12411
12430
2
3


 


SEQ ID NO: 3362
tgaaaaaactaaccatctc
1113
1132
SEQ ID NO: 4703
gagatcaacacaatcttca
13112
13131
2
3


 


SEQ ID NO: 3363
ctgagctgagaggcctcag
1176
1195
SEQ ID NO: 4704
ctgaattactgcacctcag
3035
3054
2
3


 


SEQ ID NO: 3364
tgaaacgtgtgcatgccaa
1311
1330
SEQ ID NO: 4705
ttggtagagcaagggttca
7856
7875
2
3


 


SEQ ID NO: 3365
ccttgtatgcgctgagcca
1440
1459
SEQ ID NO: 4706
tggcactgtttggagaagg
9138
9157
2
3


 


SEQ ID NO: 3366
aggagctgctggacattgc
1500
1519
SEQ ID NO: 4707
gcaagtcagcccagttcct
10928
10947
2
3


 


SEQ ID NO: 3367
atttgattctgcgggtcat
1575
1594
SEQ ID NO: 4708
atgaaaccaatgacaaaat
7428
7447
2
3


 


SEQ ID NO: 3368
tccagaactcaagtcttca
1627
1646
SEQ ID NO: 4709
tgaaatacaatgctctgga
5520
8539
2
3


 


SEQ ID NO: 3369
ggttcttcttcagactttc
1744
1763
SEQ ID NO: 4710
gaaataccaagtcaaaacc
10455
10474
2
3


 


SEQ ID NO: 3370
gttgatgaggagtccttca
1810
1829
SEQ ID NO: 4711
tgaaaaagctgcaatcaac
13734
13753
2
3


 


SEQ ID NO: 3371
tccaagatctgaaaaagtt
1941
1960
SEQ ID NO: 4712
aactgcttctccaaatgga
3552
3571
2
3


 


SEQ ID NO: 3372
agttagtgaaagaagttct
1958
1975
SEQ ID NO: 4713
agaattcataatcccaact
8275
8294
2
3


 


SEQ ID NO: 3373
gaagggaatcttatatttg
2084
2103
SEQ ID NO: 4714
caaaacctactgtctcttc
10487
10486
2
3


 


SEQ ID NO: 3374
ggaagctctttttgggaag
2221
2240
SEQ ID NO: 4715
cttcacataccagaattcc
8324
8343
2
3


 


SEQ ID NO: 3375
tggaataatgctcagtgtt
2374
2393
SEQ ID NO: 4716
aacaaacacaggcattcca
9656
9675
2
3


 


SEQ ID NO: 3376
gatttgaaatccaaagaag
2408
2427
SEQ ID NO: 4717
cttcatgtccctagaaatc
10037
10056
2
3


 


SEQ ID NO: 3377
tccaaagaagtcccggaag
2417
2438
SEQ ID NO: 4718
cttcagcctgctttctgga
4951
4970
2
3


 


SEQ ID NO: 3378
aggaagggctcaaagaatg
2570
2569
SEQ ID NO: 4719
cattagagctgccagtcct
10020
10039
2
3


 


SEQ ID NO: 3379
agaatgacttttttcttca
2583
2602
SEQ ID NO: 4720
tgaagatgacgacttttct
12160
12179
2
3


 


SEQ ID NO: 3380
tttgtgacaaatatgggca
2765
2784
SEQ ID NO: 4721
tgccagtttgaaaaacaaa
11815
11834
2
3


 


SEQ ID NO: 3381
ctgaggctaccatgacatt
3252
3271
SEQ ID NO: 4722
aatgtcagctcttgttcag
10903
10922
2
3


 


SEQ ID NO: 3382
gtagataccaaaaaaatga
3668
3687
SEQ ID NO: 4723
tcatttgccctcaacctac
11460
11469
2
3


 


SEQ ID NO: 3383
aaatgacttccaatttccc
3681
3700
SEQ ID NO: 4724
gggaactgttgaaagattt
12927
12946
2
3


 


SEQ ID NO: 3384
atgacttccaatttccctg
3683
3702
SEQ ID NO: 4725
caggagaacttactatcat
13785
13804
2
3


 


SEQ ID NO: 3385
atctgccatctcgagagtt
4104
4123
SEQ ID NO: 4726
aactcctccactgaaagat
9547
9566
2
3


 


SEQ ID NO: 3386
atttgtttgtcaaagaagt
4551
4570
SEQ ID NO: 4727
acttccgtttaccagaaat
8247
8266
2
3


 


SEQ ID NO: 3387
gcagagcttggcctctctg
5135
5154
SEQ ID NO: 4728
cagagctttctgccactgc
13518
13537
2
3


 


SEQ ID NO: 3388
atatgctgaaatgaaattt
5353
5372
SEQ ID NO: 4729
aaattcaaactgcctatat
13874
1389
2
3


 


SEQ ID NO: 3389
tcaaaacttgacaacattt
5420
5439
SEQ ID NO: 4730
aaatacttccacaaattga
8780
8799
2
3


 


SEQ ID NO: 3390
cagtgacctgaaatacaat
5512
5531
SEQ ID NO: 4731
attgaacatccccaaactg
8794
8813
2
3


 


SEQ ID NO: 3391
tacaaatggcaatgggaaa
5848
5867
SEQ ID NO: 4732
tttcaactgcctttgtgta
11229
11248
2
3


 


SEQ ID NO: 3392
cttttgtaaagtatgataa
6285
6304
SEQ ID NO: 4733
ttattgctgaatccaaaag
13656
13675
2
3


 


SEQ ID NO: 3393
ttgtaaagtatgataaaaa
6288
6307
SEQ ID NO: 4734
ttttcaagcaaatgcacaa
8539
8556
2
3


 


SEQ ID NO: 3394
tccattaacctcccatttt
6320
6339
SEQ ID NO: 4735
aaaagaaaattttgctgga
10755
10775
2
3


 


SEQ ID NO: 3395
gattatctgaattcattca
6488
6507
SEQ ID NO: 4736
tgaagtagaccaacaaatc
7162
7181
2
3


 


SEQ ID NO: 3396
aattgggagagacaagttt
6606
6525
SEQ ID NO: 4737
aaactaaatgatctaaatt
11324
11343
2
3


 


SEQ ID NO: 3397
atttgaaaatagctattgc
6698
6715
SEQ ID NO: 4738
gcaatttctgcacagaaat
13441
13460
2
3


 


SEQ ID NO: 3398
tgagcatgtcaaacacttt
7060
7079
SEQ ID NO: 4739
aaagccattcagtctctca
12971
12990
2
3


 


SEQ ID NO: 3399
ttgaagatgttaacaaatt
7356
7375
SEQ ID NO: 4740
aattccatatgaaagtcaa
12660
12679
2
3


 


SEQ ID NO: 3400
acttgtcacctacatttct
7783
7772
SEQ ID NO: 4741
agaatattttgatccaagt
13278
13295
2
3


 


SEQ ID NO: 3401
gttttccacaccagaattt
8050
8089
SEQ ID NO: 4742
aaatctggatttcttaaac
9481
9500
2
3


 


SEQ ID NO: 3402
ataagtacaaccaaaattt
9405
9424
SEQ ID NO: 4743
aaataaatggagtctttat
14083
14102
2
3


 


SEQ ID NO: 3403
cgggacctgcggggctgag
8
27
SEQ ID NO: 4744
ctcagttaactgtgtcccg
11571
11590
1
3


 


SEQ ID NO: 3404
agtgcccttctcggttgct
28
44
SEQ ID NO: 4745
agcatctgattgactcact
12878
12697
1
3


 


SEQ ID NO: 3405
gctgaggagcccgcccagc
47
66
SEQ ID NO: 4746
gctgattgaggtgtccagc
1225
1244
1
3


 


SEQ ID NO: 3406
gaggagcccgcccagccag
50
69
SEQ ID NO: 4747
ctggatcacagagtccctc
3752
3771
1
3


 


SEQ ID NO: 3407
gggccgcgaggccgaggcc
72
91
SEQ ID NO: 4748
ggccctgatccccgagccc
1383
1382
1
3


 


SEQ ID NO: 3408
ccaggccgcagcccaggag
89
108
SEQ ID NO: 4749
ctcccggagccaaggctgg
2682
2701
1
3


 


SEQ ID NO: 3409
ggagccgccccaccgcagc
104
123
SEQ ID NO: 4750
gctgttttgaagactctcc
1085
1107
1
3


 


SEQ ID NO: 3410
gaagaggaaatgctggaaa
200
219
SEQ ID NO: 4751
tttcaagttcctgaccttc
8309
8328
1
3


 


SEQ ID NO: 3411
caaaagatgcgacccgatt
237
256
SEQ ID NO: 4752
aatcttattggggattttg
7085
7104
1
3


 


SEQ ID NO: 3412
attcaagcacctccggaag
253
272
SEQ ID NO: 4753
cttccacatttcaaggaat
10067
10086
1
3


 


SEQ ID NO: 3413
gttccagtggagtccctgg
297
316
SEQ ID NO: 4754
ccagcaagtacctgagaac
8610
8629
1
3


 


SEQ ID NO: 3414
gactgctgattcaagaagt
316
335
SEQ ID NO: 4755
acttgaagaaaagatagtc
13324
13343
1
3


 


SEQ ID NO: 3415
gtgccaccaggatcaactg
333
352
SEQ ID NO: 4756
cagtgaagctgcagggcac
10704
10723
1
3


 


SEQ ID NO: 3416
gatcaactgcaaggttgag
343
362
SEQ ID NO: 4757
ctcacctccacctctgatc
4748
4767
1
3


 


SEQ ID NO: 3417
actgcaaggttgagctgga
348
367
SEQ ID NO: 4758
tccactcacatcctccagt
1289
1308
1
3


 


SEQ ID NO: 3418
ccagctctgcagcttcatc
373
392
SEQ ID NO: 4759
gatgtggtcacctacctgg
1343
1382
1
3


 


SEQ ID NO: 3419
agcttcatcctgaagacca
383
402
SEQ ID NO: 4760
tggtgctggagaatgagct
5112
5131
1
3


 


SEQ ID NO: 3420
cttcatcctgaagaccagc
385
404
SEQ ID NO: 4761
gctggagtaaaactggaag
2696
2715
1
3


 


SEQ ID NO: 3421
ccagccagtgcaccctgaa
399
418
SEQ ID NO: 4762
ttcaagatgactgcactgg
1539
1558
1
3


 


SEQ ID NO: 3422
cagtgcaccctgaaagagg
404
423
SEQ ID NO: 4763
cctcacagagctatcactg
5230
5249
1
3


 


SEQ ID NO: 3423
tggcttcaaccctgagggc
427
448
SEQ ID NO: 4764
gcccactggtcgcctgcca
3633
3552
1
3


 


SEQ ID NO: 3424
cttcaaccctgagggcaaa
430
449
SEQ ID NO: 4765
tttgagccaacattggaag
2207
2226
1
3


 


SEQ ID NO: 3425
ttcaaccctgagggcaaag
431
450
SEQ ID NO: 4766
ctttgacaggcattttgaa
9727
9746
1
3


 


SEQ ID NO: 3426
cttgctgaagaaaaccaag
451
470
SEQ ID NO: 4767
cttgaaattcaatcacaag
9074
9093
1
3


 


SEQ ID NO: 3427
tgctgaagaaaaccaagaa
453
472
SEQ ID NO: 4768
ttctgctgccttatcagca
5647
5666
1
3


 


SEQ ID NO: 3428
ttgctgcagccatgtccag
483
502
SEQ ID NO: 4769
ctggtcagtttgcaagcaa
3004
3023
1
3


 


SEQ ID NO: 3429
tgctgcagccatgtccagg
484
503
SEQ ID NO: 4770
cctggtcagtttgcaagca
3003
3022
1
3


 


SEQ ID NO: 3430
agccatgtccaggtatgag
490
509
SEQ ID NO: 4771
ctcacatcctccagtggct
1293
1312
1
3


 


SEQ ID NO: 3431
agctcaagctggccattcc
507
528
SEQ ID NO: 4772
ggaactaccacaaaaagct
7489
7508
1
3


 


SEQ ID NO: 3432
agaagggaagcaggttttc
526
545
SEQ ID NO: 4773
gaaatcttcaatttattct
13821
13840
1
3


 


SEQ ID NO: 3433
aagggaagcaggttttcct
528
547
SEQ ID NO: 4774
aggacaccaaaataacctt
7572
7591
1
3


 


SEQ ID NO: 3434
agaaagatgaacctactta
555
574
SEQ ID NO: 4775
taagaactttgccacttct
4852
4871
1
3


 


SEQ ID NO: 3435
atcctgaacatcaagaggg
575
594
SEQ ID NO: 4776
ccctaacagatttgaggat
7977
7996
1
3


 


SEQ ID NO: 3436
tcctgaacatcaagagggg
576
595
SEQ ID NO: 4777
cccctaacagatttgagga
7976
7995
1
3


 


SEQ ID NO: 3437
ctgaacatcaagaggggca
578
597
SEQ ID NO: 4778
tgcctgcctttgaagtcag
7908
7927
1
3


 


SEQ ID NO: 3438
aacatcaagaggggcatca
551
600
SEQ ID NO: 4779
tgataaaaaccaagatgtt
6298
6317
1
3


 


SEQ ID NO: 3439
acatcaagaggggcatcat
582
601
SEQ ID NO: 4780
atgataaaaaccaagatgt
6297
6316
1
3


 


SEQ ID NO: 3440
tcatttctgccctcctggt
597
616
SEQ ID NO: 4781
accaccagtttgtagatga
7413
7432
1
3


 


SEQ ID NO: 3441
ttcccccagagacagaaga
615
634
SEQ ID NO: 4782
tcttccacatttcaaggaa
10066
10055
1
3


 


SEQ ID NO: 3442
gaagaagccaagcaagtgt
629
648
SEQ ID NO: 4783
acaccttccacattccttc
8079
8098
1
3


 


SEQ ID NO: 3443
ttgtttctggataccgtgt
647
666
SEQ ID NO: 4784
acactaaatacttccacaa
8775
8794
1
3


 


SEQ ID NO: 3444
tgtatggaaactgctccac
663
682
SEQ ID NO: 4785
gtggaggcaacacattaca
2928
2947
1
3


 


SEQ ID NO: 3445
aaactgctccactcacttt
670
689
SEQ ID NO: 4786
aaagaaacagcatttgttt
4540
4559
1
3


 


SEQ ID NO: 3446
actcactttaccgtcaaga
680
699
SEQ ID NO: 4787
tcttacttttccattgagt
10580
10599
1
3


 


SEQ ID NO: 3447
ctttaccgtcaagacgagg
685
704
SEQ ID NO: 4788
cctccagctcctgggaaag
2491
2510
1
3


 


SEQ ID NO: 3448
ttaccgtcaagacgaggaa
687
706
SEQ ID NO: 4789
ttcctaaagctggatgtaa
11177
11196
1
3


 


SEQ ID NO: 3449
acgaggaagggcaatgtgg
698
717
SEQ ID NO: 4790
ccacaagtcatcatctcgt
5964
5983
1
3


 


SEQ ID NO: 3450
cgaggaagggcaatgtggc
699
718
SEQ ID NO: 4791
gccagaagtgagatcctcg
3515
3534
1
3


 


SEQ ID NO: 3451
gaggaagggcaatgtggca
700
719
SEQ ID NO: 4792
tgccagtctccatgacctc
2476
2495
1
3


 


SEQ ID NO: 3452
ggaagggcaatgtggcaac
702
721
SEQ ID NO: 4793
gttgctcttaaggacttcc
13364
13383
1
3


 


SEQ ID NO: 3453
gaagggcaatgtggcaaca
703
722
SEQ ID NO: 4794
tgttgatgaggagtccttc
1809
1828
1
3


 


SEQ ID NO: 3454
caggcatcagcccacttgc
777
796
SEQ ID NO: 4795
gcaagtctttcctggcctg
3019
3038
1
3


 


SEQ ID NO: 3455
aggcatcagcccacttgct
778
797
SEQ ID NO: 4796
agcaagtctttcctggcct
3018
3037
1
3


 


SEQ ID NO: 3456
tcagcccacttgctctcat
783
802
SEQ ID NO: 4797
atgaaagtcaagcatctga
12668
12687
1
3


 


SEQ ID NO: 3457
gtcaactctgatcagcagc
823
842
SEQ ID NO: 4798
gctgactttaaaatctgac
4819
4838
1
3


 


SEQ ID NO: 3458
ggacgctaagaggaagcat
865
884
SEQ ID NO: 4799
atgcactgtttctgagtcc
9339
9358
1
3


 


SEQ ID NO: 3459
aaggagcaacacctcttcc
802
921
SEQ ID NO: 4800
ggaatatcttagcatcctt
13465
13484
1
3


 


SEQ ID NO: 3460
aggagcaacacctcttcct
903
922
SEQ ID NO: 4801
aggaatatcttagcatcct
13464
13483
1
3


 


SEQ ID NO: 3461
caacacctcttcctgcctt
908
927
SEQ ID NO: 4802
aaggctgactctgtggttg
4292
4311
1
3


 


SEQ ID NO: 3462
aacacctcttcctgccttt
909
928
SEQ ID NO: 4803
aaagcaggccgaagctgtt
1076
1094
1
3


 


SEQ ID NO: 3463
acaagaataagtatgggat
933
95
SEQ ID NO: 4804
atccatgatctacatttgt
6794
6813
1
3


 


SEQ ID NO: 3464
caagaataagtatgggatg
934
953
SEQ ID NO: 4805
catcactttacaagccttg
1246
1265
1
3


 


SEQ ID NO: 3465
tagcacaagtgacacagac
954
973
SEQ ID NO: 4806
gtctcttcgttctatgcta
4592
4611
1
3


 


SEQ ID NO: 3466
agcacaagtgacacagact
955
974
SEQ ID NO: 4807
agtctcttcgttctatgct
4591
4610
1
3


 


SEQ ID NO: 3467
gcacaagtgacacagactt
956
975
SEQ ID NO: 4808
aagtgtagtctcctggtgc
5099
5116
1
3


 


SEQ ID NO: 3468
aacttgaagacacaccaaa
978
997
SEQ ID NO: 4809
tttgaggattccatcagtt
7987
8006
1
3


 


SEQ ID NO: 3469
gcttctttggtgaaggtac
1008
1027
SEQ ID NO: 4810
gtacctacttttggcaagc
8372
8391
1
3


 


SEQ ID NO: 3470
ctttggtgaaggtactaag
1012
1031
SEQ ID NO: 4811
cttatgggatttcctaaag
11167
11186
1
3


 


SEQ ID NO: 3471
tactaagaagatgggcctc
1024
1043
SEQ ID NO: 4812
gagggtagtcataacagta
10337
10356
1
3


 


SEQ ID NO: 3472
tttgagagcaccaaatcca
1046
1065
SEQ ID NO: 4813
tggaagtgtcagtggcaaa
10380
10399
1
3


 


SEQ ID NO: 3473
agagcaccaaatccacatc
1050
1069
SEQ ID NO: 4814
gatggatatgaccttctct
4876
4895
1
3


 


SEQ ID NO: 3474
agctgttttgaagactctc
1087
1106
SEQ ID NO: 4815
gagaacatactgggcagct
5880
5899
1
3


 


SEQ ID NO: 3475
tgaaaaaactaaccatctc
1113
1132
SEQ ID NO: 4816
gagaaaatcaatgccttca
7112
7131
1
3


 


SEQ ID NO: 3476
gaaaaaactaaccatctct
1114
1133
SEQ ID NO: 4817
agagccaggtcgagctttc
11052
11071
1
3


 


SEQ ID NO: 3477
tctgagcaaaatatccaga
1130
1149
SEQ ID NO: 4818
tctgatgaggaaactcaga
12260
12279
1
3


 


SEQ ID NO: 3478
tctcttcaataagctggtt
1156
1175
SEQ ID NO: 4819
aacctcccattttttgaga
6326
6345
1
3


 


SEQ ID NO: 3479
ctgagctgagaggcctcag
1176
1195
SEQ ID NO: 4820
ctgatccccgagccctcag
1367
1386
1
3


 


SEQ ID NO: 3480
tgaagcagtcacatctctc
1198
1217
SEQ ID NO: 4821
gagaaaatcaatgccttca
7112
7131
1
3


 


SEQ ID NO: 3481
aagcagtcacatctctctt
1200
1219
SEQ ID NO: 4822
aagaggcagcttctggctt
12297
12316
1
3


 


SEQ ID NO: 3482
ctctcttgccacagctgat
1212
1231
SEQ ID NO: 4823
atcaaaagaagcccaagag
12946
12965
1
3


 


SEQ ID NO: 3483
tcttgccacagctgattga
1215
1234
SEQ ID NO: 4824
tcaaagttaattgggaaga
12279
12298
1
3


 


SEQ ID NO: 3484
cttgccacagctgattgag
1216
1235
SEQ ID NO: 4825
ctcaattttgattttcaag
8528
8547
1
3


 


SEQ ID NO: 3485
tgaggtgtccagccccatc
1231
1250
SEQ ID NO: 4826
gatggaaccctctccctca
4733
4752
1
3


 


SEQ ID NO: 3486
tcagtgtggacagcctcag
1267
1286
SEQ ID NO: 4827
ctgacatcttaggcactga
5801
5020
1
3


 


SEQ ID NO: 3487
acatcctccagtggctgaa
1296
1315
SEQ ID NO: 4828
ttcagaagctaagcaatgt
7239
7258
1
3


 


SEQ ID NO: 3488
gcacagcagctgcgagaga
1385
1404
SEQ ID NO: 4829
tctctgaaagacaacgtgc
12323
12342
1
3


 


SEQ ID NO: 3489
cagcagctgcgagagatct
1388
1407
SEQ ID NO: 4830
agataacattaaacagctg
13051
13070
1
3


 


SEQ ID NO: 3490
gcgagggatcagcgcagcc
1415
1434
SEQ ID NO: 4831
ggctcaacacagacatcgc
5718
5737
1
3


 


SEQ ID NO: 3491
aagacaaaccctacaggga
1478
1497
SEQ ID NO: 4832
tcccagaaaacctcttctt
3938
3955
1
3


 


SEQ ID NO: 3492
caggagctgctggacattg
1499
1518
SEQ ID NO: 4833
caatggagagtccaacctg
4660
4679
1
3


 


SEQ ID NO: 3493
aggagctgctggacattgc
1500
1519
SEQ ID NO: 4834
gcaagggttcactgttcct
7864
7883
1
3


 


SEQ ID NO: 3494
ctgctggacattgctaatt
1505
1524
SEQ ID NO: 4835
aattgggaagaagaggcag
12287
12306
1
3


 


SEQ ID NO: 3495
gattacacctatttgattc
1565
1584
SEQ ID NO: 4836
gaatattttgagaggaatc
6353
6372
1
3


 


SEQ ID NO: 3496
atttgattctgcgggtcat
1575
1594
SEQ ID NO: 4837
atgaagtagaccaacaaat
7161
7180
1
3


 


SEQ ID NO: 3497
tctgcgggtcattggaaat
1582
1601
SEQ ID NO: 4838
atttgtaagaaaatacaga
6436
6455
1
3


 


SEQ ID NO: 3498
aaccatggagcagttaact
1609
1628
SEQ ID NO: 4839
agtttctccatcctaggtt
9962
9981
1
3


 


SEQ ID NO: 3499
ggagcagttaactccagaa
1615
1634
SEQ ID NO: 4840
ttctgaaaatccaatctcc
8400
8419
1
3


 


SEQ ID NO: 3500
actccagaactcaagtctt
1625
1644
SEQ ID NO: 4841
aagatcgcagactttgagt
11654
11673
1
3


 


SEQ ID NO: 3501
tccagaactcaagtcttca
1627
1646
SEQ ID NO: 4842
tgaactcagaagaattgga
1920
1939
1
3


 


SEQ ID NO: 3502
aagtacaaagccatcactg
1663
1682
SEQ ID NO: 4843
cagtcatgtagaaaaactt
4429
4448
1
3


 


SEQ ID NO: 3503
gccatcactgatgatccag
1672
1691
SEQ ID NO: 4844
ctggaactctctccatggc
10883
10902
1
3


 


SEQ ID NO: 3504
ccatcactgatgatccaga
1673
1692
SEQ ID NO: 4845
tctgaactcagaaggatgg
13999
14018
1
3


 


SEQ ID NO: 3505
atccagaaagctgccatcc
1665
1704
SEQ ID NO: 4846
ggatttcctaaagctggat
11173
11192
1
3


 


SEQ ID NO: 3506
cagaaagctgccatccagg
1668
1707
SEQ ID NO: 4847
cctgaaatacaatgctctg
5518
5537
1
3


 


SEQ ID NO: 3507
acaaggaccaggaggttct
1731
1750
SEQ ID NO: 4848
agaaacagcatttgtttgt
4542
4651
1
3


 


SEQ ID NO: 3508
aggaccaggaggttcttct
1734
1753
SEQ ID NO: 4849
agaagctaagcaatgtcct
7242
7261
1
3


 


SEQ ID NO: 3509
accaggaggttcttcttca
1737
1756
SEQ ID NO: 4850
tgaaggctgactctgtggt
4290
4309
1
3


 


SEQ ID NO: 3510
tcttcagactttccttgat
1750
1769
SEQ ID NO: 4851
atcaggaagggctcaaaga
2567
2586
1
3


 


SEQ ID NO: 3511
ttcagactttccttgatga
1752
1771
SEQ ID NO: 4852
tcattactcctgggctgaa
11307
11326
1
3


 


SEQ ID NO: 3512
gttgatgaggagtccttca
1810
1829
SEQ ID NO: 4853
tgaatctggctccctcaac
9046
9065
1
3


 


SEQ ID NO: 3513
cttcacaggcagatattaa
1824
1843
SEQ ID NO: 4854
ttaatcgagaggtatgaag
7148
7167
1
3


 


SEQ ID NO: 3514
ttcacaggcagatattaac
1825
1844
SEQ ID NO: 4855
gttaatcgagaggtatgaa
7147
7166
1
3


 


SEQ ID NO: 3515
ggcagatattaacaaaatt
1831
1850
SEQ ID NO: 4856
aattgcattagatgatgcc
6589
6808
1
3


 


SEQ ID NO: 3516
atattaacaaaattgtcca
1836
1855
SEQ ID NO: 4857
tggagtttgtgacaaatat
2760
2779
1
3


 


SEQ ID NO: 3517
acaaaattgtccaaattct
1842
1861
SEQ ID NO: 4858
agaaacagcatttgtttgt
4542
4561
1
3


 


SEQ ID NO: 3518
gagcaagtgaagaactttg
1877
1896
SEQ ID NO: 4859
caaatgacatgatgggctc
5334
5353
1
3


 


SEQ ID NO: 3519
gtgaagaactttgtggctt
1883
1902
SEQ ID NO: 4860
aagcatctgattgactcac
12677
12698
1
3


 


SEQ ID NO: 3520
agaactttgtggcttccca
1887
1906
SEQ ID NO: 4861
tgggcctgccccagattct
8909
8928
1
3


 


SEQ ID NO: 3521
tttgtggcttcccatattg
1802
1911
SEQ ID NO: 4862
caataagatcaatagcaaa
8998
9017
1
3


 


SEQ ID NO: 3522
tggcttcccatattgccaa
1896
1915
SEQ ID NO: 4883
ttggctcacatgaaggcca
7631
7650
1
3


 


SEQ ID NO: 3523
ttcccatattgccaatatc
1900
1919
SEQ ID NO: 4864
gatatacactagggaggaa
12745
12764
1
3


 


SEQ ID NO: 3524
tcccatattgccaatatct
1901
1920
SEQ ID NO: 4865
agatcaaagttaattggga
12276
12295
1
3


 


SEQ ID NO: 3525
ttgccaatatcttgaactc
1908
1927
SEQ ID NO: 4866
gagtcccagtgcccagcaa
9352
9371
1
3


 


SEQ ID NO: 3526
ttggatatccaagatctga
1934
1953
SEQ ID NO: 4857
tcagtataagtacaaccaa
9400
9419
1
3


 


SEQ ID NO: 3527
tccaagatctgaaaaagtt
1941
1960
SEQ ID NO: 4868
aacttccaactgtcatgga
1986
2005
1
3


 


SEQ ID NO: 3528
ctgaaaaagttagtgaaag
1949
1968
SEQ ID NO: 4869
ctttgaagtcagtcttcag
7915
7934
1
3


 


SEQ ID NO: 3529
agttagtgaaagaagttct
1956
1975
SEQ ID NO: 4870
agaatctcaacttccaact
1978
1997
1
3


 


SEQ ID NO: 3530
aatctcaacttccaactgt
1980
1999
SEQ ID NO: 4871
acaggggtcctttatgatt
12350
12369
1
3


 


SEQ ID NO: 3531
gtcatggacttcagaaaat
1997
2016
SEQ ID NO: 4872
atttgaaagaataaatgac
7036
7055
1
3


 


SEQ ID NO: 3532
tcaactctacaaatctgtt
2029
2048
SEQ ID NO: 4873
aacacattgaggctattga
6978
6997
1
3


 


SEQ ID NO: 3533
aactctacaaatctgtttc
2031
2050
SEQ ID NO: 4874
gaaaaaggggattgaagtt
10284
10303
1
3


 


SEQ ID NO: 3534
aaatagaagggaatcttat
2079
2098
SEQ ID NO: 4875
ataagcaaactgttaattt
5457
5476
1
3


 


SEQ ID NO: 3535
agaagggaatcttatattt
2083
2102
SEQ ID NO: 4876
aaatgcactgctgcgttct
4900
4919
1
3


 


SEQ ID NO: 3536
gaagggaatcttatatttg
2084
2103
SEQ ID NO: 4877
caaaaacattttcaacttc
5287
5306
1
3


 


SEQ ID NO: 3537
tgatccaaataactacctt
2101
2120
SEQ ID NO: 4878
aaggaagaaagaaaaatca
3461
3480
1
3


 


SEQ ID NO: 3538
tggatttgcttcagctgac
2158
2177
SEQ ID NO: 4879
gtcagcccagttccttcca
10932
10951
1
3


 


SEQ ID NO: 3539
tttgcttcagctgacctca
2162
2181
SEQ ID NO: 4889
tgaggaaactcagatcaaa
12265
12284
1
3


 


SEQ ID NO: 3540
cttggaaggaaaaggcttt
2191
2210
SEQ ID NO: 4881
aaagcattggtagagcaag
7850
7869
1
3


 


SEQ ID NO: 3541
tggaaggaaaaggctttga
2193
2212
SEQ ID NO: 4882
tcaagtctgtgggattcca
4086
4105
1
3


 


SEQ ID NO: 3542
ggctttgagccaacattgg
2204
2223
SEQ ID NO: 4883
ccaagaggtatttaaagcc
12958
12977
1
3


 


SEQ ID NO: 3543
tgagccaacattggaagct
2209
2228
SEQ ID NO: 4884
agctttctgccactgctca
13521
13540
1
3


 


SEQ ID NO: 3544
gagccaacattggaagctc
2210
2229
SEQ ID NO: 4885
gagctttctgccactgctc
13520
13539
1
3


 


SEQ ID NO: 3545
aacattggaagctcttttt
2215
2234
SEQ ID NO: 4886
aaaagaaacagcatttgtt
4539
4858
1
3


 


SEQ ID NO: 3546
tggaagctctttttgggaa
2220
2239
SEQ ID NO: 4887
ttccggcacgtgggttcca
3785
3804
1
3


 


SEQ ID NO: 3547
ctctttttgggaagcaagg
2226
2245
SEQ ID NO: 4888
ccttactgactttgcagag
7799
7817
1
3


 


SEQ ID NO: 3548
tttttgggaagcaaggatt
2229
2248
SEQ ID NO: 4889
aatcattgaaaaattaaaa
6738
6749
1
3


 


SEQ ID NO: 3549
ttttcccagacagtgtcaa
2247
2265
SEQ ID NO: 4890
ttgatgaaatcattgaaaa
6723
6742
1
3


 


SEQ ID NO: 3550
ttggctataccaaagatga
2331
2360
SEQ ID NO: 4891
tcattgctcccggagccaa
2678
2695
1
3


 


SEQ ID NO: 3551
ataccaaagatgataaaca
2337
2358
SEQ ID NO: 4892
tgttgcttttgtaaagtat
6280
6299
1
3


 


SEQ ID NO: 3552
gagcaggatatggtaaatg
2357
2376
SEQ ID NO: 4893
catttcagccttcgggctc
4262
4281
1
3


 


SEQ ID NO: 3553
atggtaaatggaataatgc
2366
2385
SEQ ID NO: 4894
gcatgcctagtttctccat
9954
9973
1
3


 


SEQ ID NO: 3554
tggtaaatggaataatgct
2367
2386
SEQ ID NO: 4895
agcacagtacgaaaaacca
10809
10828
1
3


 


SEQ ID NO: 3555
taaatggaataatgctcag
2370
2389
SEQ ID NO: 4896
ctgaaagagatgaaattta
13067
13086
1
3


 


SEQ ID NO: 3556
tggaataatgctcagtgtt
2374
2393
SEQ ID NO: 4897
aacagatttgaggattcca
7981
8000
1
3


 


SEQ ID NO: 3557
tcagtgttgagaagctgat
2355
2404
SEQ ID NO: 4898
atcacaactcctccactga
9542
9561
1
3


 


SEQ ID NO: 3558
cagtgttgagaagctgatt
2386
2405
SEQ ID NO: 4899
aatcacaactcctccactg
9541
9560
1
3


 


SEQ ID NO: 3559
agtgttgagaagctgatta
2387
2406
SEQ ID NO: 4900
taatcacaactcctccact
9540
9559
1
3


 


SEQ ID NO: 3560
gattaaagatttgaaatcc
2401
2420
SEQ ID NO: 4901
ggatactaagtaccaaatc
5874
6893
1
3


 


SEQ ID NO: 3561
gatttgaaatccaaagaag
2408
2427
SEQ ID NO: 4902
cttccgtttaccagaaatc
8248
8267
1
3


 


SEQ ID NO: 3562
atttgaaatccaaagaagt
2409
2428
SEQ ID NO: 4903
acttccgtttaccagaaat
8247
8268
1
3


 


SEQ ID NO: 3563
atccaaagaagtcccggaa
2416
2435
SEQ ID NO: 4904
ttccaatttccctgtggat
3688
3707
1
3


 


SEQ ID NO: 3564
tccaaagaagtcccggaag
2417
2436
SEQ ID NO: 4905
cttccaatttccctgtgga
3887
3706
1
3


 


SEQ ID NO: 3565
agagcctacctccgcatct
2438
2457
SEQ ID NO: 4906
agattaatccgctggctct
8571
8590
1
3


 


SEQ ID NO: 3566
gagcctacctccgcatctt
2439
2458
SEQ ID NO: 4907
aagattaatccgctggctc
8570
8589
1
3


 


SEQ ID NO: 3567
cttgggagaggagcttggt
2455
2474
SEQ ID NO: 4908
accactgggacctaccaag
12527
12546
1
3


 


SEQ ID NO: 3568
ggagcttggttttgccagt
2464
2483
SEQ ID NO: 4909
actggtggcaaaaccctcc
2734
2753
1
3


 


SEQ ID NO: 3569
ttggttttgccagtctcca
2469
2488
SEQ ID NO: 4910
tggagaagccacactccaa
10771
10790
1
3


 


SEQ ID NO: 3570
cagtctccatgacctccag
2479
2498
SEQ ID NO: 4911
ctggtcgcctgccaaactg
3538
3557
1
3


 


SEQ ID NO: 3571
ctccatgacctccagctcc
2483
2502
SEQ ID NO: 4912
ggagtcattgctcccggag
2672
2691
1
3


 


SEQ ID NO: 3572
ctgggaaagctgcttctga
2501
2520
SEQ ID NO: 4913
tcagaaagctaccttccag
7939
7958
1
3


 


SEQ ID NO: 3573
gaggtcatcaggaagggct
2561
2580
SEQ ID NO: 4914
agccagaagtgagatcctc
3514
3533
1
3


 


SEQ ID NO: 3574
aagaatgacttttttcttc
2582
2601
SEQ ID NO: 4915
gaaggcatctgggagtctt
3835
3854
1
3


 


SEQ ID NO: 3575
cttttttcttcactacatc
2590
2609
SEQ ID NO: 4916
gatgcttacaacactaaag
6107
6126
1
3


 


SEQ ID NO: 3576
catcttcatggagaatgcc
2605
2624
SEQ ID NO: 4917
ggcacttccaaaattgatg
10718
10737
1
3


 


SEQ ID NO: 3577
cttcatggagaatgccttt
2608
2627
SEQ ID NO: 4918
aaagttaattgggaagaag
12281
12300
1
3


 


SEQ ID NO: 3578
aatgcctttgaactcccca
2618
2637
SEQ ID NO: 4919
tgggctggcttcagccatt
5737
5756
1
3


 


SEQ ID NO: 3579
gcctttgaactccccactg
2621
2640
SEQ ID NO: 4920
cagtctgaacattgcaggc
5383
5402
1
3


 


SEQ ID NO: 3580
caaggctggagtaaaactg
2692
2711
SEQ ID NO: 4921
cagtgcaacgaccaacttg
5080
5099
1
3


 


SEQ ID NO: 3581
tggagtaaaactggaagta
2698
2717
SEQ ID NO: 4922
tactccaacgccagctcca
3059
3078
1
3


 


SEQ ID NO: 3582
ggaagtagccaacatgcag
2710
2729
SEQ ID NO: 4923
ctgccatctcgagagttcc
4106
4125
1
3


 


SEQ ID NO: 3583
tttgtgacaaatatgggca
2765
2784
SEQ ID NO: 4924
tgcctttgtgtacaccaaa
11236
11255
1
3


 


SEQ ID NO: 3584
tgtgacaaatatgggcatc
2767
2786
SEQ ID NO: 4925
gatgggtctctacgccaca
4385
4404
1
3


 


SEQ ID NO: 3585
ggacttcgctaggagtggg
2794
2813
SEQ ID NO: 4926
cccaaggccacaggggtcc
12341
12360
1
3


 


SEQ ID NO: 3586
gtggggtccagatgaacac
2808
2827
SEQ ID NO: 4927
gtgttctagacctctccac
4179
4198
1
3


 


SEQ ID NO: 3587
ttccacgagtcgggtctgg
2834
2853
SEQ ID NO: 4928
ccagaatctgtaccaggaa
12562
12581
1
3


 


SEQ ID NO: 3588
agtcgggtctggaggctca
2841
2860
SEQ ID NO: 4929
tgagaactacgagctgact
4807
4826
1
3


 


SEQ ID NO: 3589
tcgggtctggaggctcatg
2843
2862
SEQ ID NO: 4930
catgaaggccaaattccga
7639
7658
1
3


 


SEQ ID NO: 3590
aaaagctgggaagctgaag
2869
2883
SEQ ID NO: 4931
cttccagacacctgatttt
7951
7970
1
3


 


SEQ ID NO: 3591
aagctgaagtttatcattc
2879
2898
SEQ ID NO: 4932
gaatttacaattgttgctt
6269
6288
1
3


 


SEQ ID NO: 3592
gagaccagtcaagctgctc
2908
2927
SEQ ID NO: 4933
gagcttcaggaagcttctc
13214
13233
1
3


 


SEQ ID NO: 3593
gcaacacattacatttggt
2934
2953
SEQ ID NO: 4934
accagtcagatattgttgc
10191
10210
1
3


 


SEQ ID NO: 3594
acattacatttggtctcta
2939
2958
SEQ ID NO: 4935
tagaatatgaactaaatgt
11889
11908
1
3


 


SEQ ID NO: 3595
cattacatttggtctctac
2940
2959
SEQ ID NO: 4936
gtagctgagaaaatcaatg
7108
7125
1
3


 


SEQ ID NO: 3596
aaacggaggtgatcccacc
2964
2983
SEQ ID NO: 4937
ggtggataccctgaagttt
3205
3224
1
3


 


SEQ ID NO: 3597
attgagaacaggcagtcct
2987
3006
SEQ ID NO: 4938
aggaaaagcgcacctcaat
12031
12050
1
3


 


SEQ ID NO: 3598
tgagaacaggcagtcctgg
2989
3008
SEQ ID NO: 4939
ccagcttccccacatctca
8341
8360
1
3


 


SEQ ID NO: 3599
ctgcacctcaggcgcttac
3043
3002
SEQ ID NO: 4940
gtaagaaaatacagagcag
6440
6459
1
3


 


SEQ ID NO: 3600
tccacagactccgcctcct
3074
3093
SEQ ID NO: 4941
aggacagagccttggtgga
3192
3211
1
3


 


SEQ ID NO: 3601
ctgaccggggacaccagat
3101
3120
SEQ ID NO: 4942
atctgatgaggaaactcag
12259
12278
1
3


 


SEQ ID NO: 3602
tagagctggaactgaggcc
3120
3139
SEQ ID NO: 4943
ggcctctctggggcatcta
5144
5163
1
3


 


SEQ ID NO: 3603
ctatgagctccagagagag
3175
3194
SEQ ID NO: 4944
ctctcacaaaaaagtatag
6549
6568
1
3


 


SEQ ID NO: 3604
cttggtggataccctgaag
3202
3221
SEQ ID NO: 4945
cttcaggaagcttctcaag
13217
13236
1
3


 


SEQ ID NO: 3605
ttgtaactcaagcagaagg
3222
3241
SEQ ID NO: 4946
ccttacacaataatcacaa
9530
9549
1
3


 


SEQ ID NO: 3606
taactcaagcagaaggtgc
3225
3244
SEQ ID NO: 4947
gcacctagctggaaagtta
6955
6974
1
3


 


SEQ ID NO: 3607
gcagaaggtgcgaagcaga
3233
3252
SEQ ID NO: 4948
tctgtgggattccatctgc
4091
4110
1
3


 


SEQ ID NO: 3608
cagaaggtgcgaagcagac
3234
3253
SEQ ID NO: 4949
gtctgtgggattccatctg
4090
4109
1
3


 


SEQ ID NO: 3609
gtatgaccttgtccagtga
3288
3307
SEQ ID NO: 4950
tcaccaacggagaacatac
10851
10870
1
3


 


SEQ ID NO: 3610
tatgaccttgtccagtgaa
3289
3308
SEQ ID NO: 4951
ttcaccaacggagaacata
10850
10869
1
3


 


SEQ ID NO: 3611
gaagtccaaattccggatt
3305
3324
SEQ ID NO: 4952
aatctcaagctttctcttc
10052
10071
1
3


 


SEQ ID NO: 3612
gagggcaaaacgtcttaca
3371
3390
SEQ ID NO: 4953
tgtacaactggtccgccts
4215
4234
1
3


 


SEQ ID NO: 3613
agggcaaaacgtcttacag
3372
3391
SEQ ID NO: 4954
ctgttaggacaccagccct
4062
4081
1
3


 


SEQ ID NO: 3614
gactcaccctggacattca
3390
3409
SEQ ID NO: 4955
tgaaattcaatcacaagtc
9076
9095
1
3


 


SEQ ID NO: 3615
ctggacattcagaacaaga
3398
3417
SEQ ID NO: 4956
tcttttcttttcagcccag
9226
9245
1
3


 


SEQ ID NO: 3616
tcatgggcgacctaagttg
3435
3454
SEQ ID NO: 4957
caactgcagacatatatga
6635
6654
1
3


 


SEQ ID NO: 3617
tgggcgacctaagttgtga
3438
3457
SEQ ID NO: 4958
tcactccattaacctccca
6316
6335
1
3


 


SEQ ID NO: 3618
agttgtgacacaaaggaag
3449
3468
SEQ ID NO: 4959
cttcttttccaattgaact
13838
13857
1
3


 


SEQ ID NO: 3619
tgacacaaaggaagaaaga
3454
3473
SEQ ID NO: 4960
tcttcatcttcatctgtca
10220
10239
1
3


 


SEQ ID NO: 3620
gacacaaaggaagaaagaa
3455
3474
SEQ ID NO: 4961
ttcttcatcttcatctgtc
10219
10238
1
3


 


SEQ ID NO: 3621
ggaagaaagaaaaatcaag
3463
3482
SEQ ID NO: 4962
cttgtcatgcctacgttcc
11348
11367
1
3


 


SEQ ID NO: 3622
aaaatcaagggtgttattt
3473
3492
SEQ ID NO: 4963
aaatcttattggggatttt
7084
7103
1
3


 


SEQ ID NO: 3623
tccataccccgtttgcaag
3491
3510
SEQ ID NO: 4964
cttggattcaaaatgtgga
6858
6877
1
3


 


SEQ ID NO: 3624
tgcaagcagaagccagaag
3504
3523
SEQ ID NO: 4965
cttcagggaacacaatgca
5185
5204
1
3


 


SEQ ID NO: 3625
cagaagccagaagtgagat
3510
3529
SEQ ID NO: 4966
atctatgccatctcttctg
5633
5652
1
3


 


SEQ ID NO: 3626
tgagatcctcgcccactgg
3523
3542
SEQ ID NO: 4967
ccagcttccccacatctca
8341
8360
1
3


 


SEQ ID NO: 3627
ggtcgcctgccaaactgct
3540
3559
SEQ ID NO: 4968
agcacatatgaactggacc
13947
13966
1
3


 


SEQ ID NO: 3628
tgcttctccaaatggactc
3555
3574
SEQ ID NO: 4969
gagtttatcagtcagagca
9701
9720
1
3


 


SEQ ID NO: 3629
tggactcatctgctacagc
3567
3588
SEQ ID NO: 4970
gctgcagtggcccgttcca
8167
8186
1
3


 


SEQ ID NO: 3630
gctacagcttatggctcca
3578
3597
SEQ ID NO: 4971
tggaggacattcctctagc
6211
8230
1
3


 


SEQ ID NO: 3631
ggtggcatggcattatgat
3610
3629
SEQ ID NO: 4972
atcacaaattagtttcacc
8947
8966
1
3


 


SEQ ID NO: 3632
agagaagattgaatttgaa
3631
3650
SEQ ID NO: 4973
ttcaacgatacctgtctct
7713
7732
1
3


 


SEQ ID NO: 3633
caggcaccaatgtagatac
3657
3676
SEQ ID NO: 4974
gtatgctaatagactcctg
3736
3755
1
3


 


SEQ ID NO: 3634
gacttccaatttccctgtg
3685
3704
SEQ ID NO: 4975
cacaatgcaaaattcagtc
5195
5214
1
3


 


SEQ ID NO: 3635
gtccctcaaacagacatga
3764
3783
SEQ ID NO: 4976
tcataagggaggtagggac
12777
12796
1
3


 


SEQ ID NO: 3636
caaacagacatgactttcc
3770
3789
SEQ ID NO: 4977
ggaactacaatttcatttg
7022
7041
1
3


 


SEQ ID NO: 3637
atagttgcaatgagctcat
3809
3828
SEQ ID NO: 4978
atgatttgaaaatagctat
6693
6712
1
3


 


SEQ ID NO: 3638
gcttcagaaggcatctggg
3829
3848
SEQ ID NO: 4979
cccaagaggtatttaaagc
12957
12976
1
3


 


SEQ ID NO: 3639
ggagttcaacctccagaac
3895
3914
SEQ ID NO: 4980
gttcactccattaacctcc
6314
6333
1
3


 


SEQ ID NO: 3640
agaaaacctcttcttaaaa
3940
3959
SEQ ID NO: 4981
ttttctaaatggaacttct
12173
12192
1
3


 


SEQ ID NO: 3641
aaaacctcttcttaaaaag
3942
3961
SEQ ID NO: 4982
ctttgaaaaattctctttt
9213
9232
1
3


 


SEQ ID NO: 3642
aaaaagcgatggccgggtc
3955
3974
SEQ ID NO: 4983
gaccttgcaagaatatttt
6343
6362
1
3


 


SEQ ID NO: 3643
gtcaaatataccttgaaca
3971
3990
SEQ ID NO: 4984
tgttaacaaattccttgac
7353
7382
1
3


 


SEQ ID NO: 3644
tgaacaagaacagtttgaa
3984
4003
SEQ ID NO: 4985
ttcaagttcctgaccttca
8310
8329
1
3


 


SEQ ID NO: 3645
agtttgaaaattgagattc
3995
4014
SEQ ID NO: 4986
gaatctggctccctcaact
9047
9066
1
3


 


SEQ ID NO: 3646
gtttgaaaattgagattca
3996
4015
SEQ ID NO: 4987
ggaaataccaagtcaaaac
10454
10473
1
3


 


SEQ ID NO: 3647
ttgaaaattgagattcctt
3998
4017
SEQ ID NO: 4988
aaggaaaagcgcacctcaa
12030
12049
1
3


 


SEQ ID NO: 3648
ctaaagatgttagagactg
4048
4065
SEQ ID NO: 4989
cagttgaccacaagcttag
10545
10564
1
3


 


SEQ ID NO: 3649
atgttagagactgttagga
4052
4071
SEQ ID NO: 4990
tccttaacaccttccacat
8073
8092
1
3


 


SEQ ID NO: 3650
cagccctccacttcaagtc
4074
4093
SEQ ID NO: 4991
gacttctctagtcaggctg
8813
8832
1
3


 


SEQ ID NO: 3651
agccctccacttcaagtct
4075
4094
SEQ ID NO: 4992
agacatcgctgggctggct
5728
5747
1
3


 


SEQ ID NO: 3652
ccatctgccatctcgagag
4102
4121
SEQ ID NO: 4993
ctctcaaatgacatgatgg
5330
5349
1
3


 


SEQ ID NO: 3653
attcccaagttgtatcaac
4142
4161
SEQ ID NO: 4994
gttgagaagccccaagaat
6254
6273
1
3


 


SEQ ID NO: 3654
tcaactgcaagtgcctctc
4156
4175
SEQ ID NO: 4995
gagatcaagacactgttga
8843
8862
1
3


 


SEQ ID NO: 3655
ggtgttctagacctctcca
4178
4197
SEQ ID NO: 4996
tggaaccctctccctcacc
4735
4754
1
3


 


SEQ ID NO: 3656
ctccacgaatgtctacagc
4192
4211
SEQ ID NO: 4997
gctggtaacctaaaaggag
5588
5607
1
3


 


SEQ ID NO: 3657
cacgaatgtctacagcaac
4195
4214
SEQ ID NO: 4998
gttgcccaccatcatcgtg
11671
11690
1
3


 


SEQ ID NO: 3658
acgaatgtctacagcaact
4196
4215
SEQ ID NO: 4999
agttgcccaccatcatcgt
11670
11689
1
3


 


SEQ ID NO: 3659
tcctacagtggtggcaaca
4232
4251
SEQ ID NO: 5000
tgttagttgctcttaagga
13359
13378
1
3


 


SEQ ID NO: 3660
cgttaccacatgaaggctg
4260
4299
SEQ ID NO: 5001
cagcaagtacctgagaacg
8611
8630
1
3


 


SEQ ID NO: 3661
gaaggctgactctgtggtt
4291
4310
SEQ ID NO: 5002
aacctatgccttaatcttc
13169
13188
1
3


 


SEQ ID NO: 3662
tgtggttgacctgctttcc
4303
4322
SEQ ID NO: 5003
ggaaagttaaaacaacaca
6965
6984
1
3


 


SEQ ID NO: 3663
cctgctttcctacaatgtg
4312
4331
SEQ ID NO: 5004
cacaccttgacattgcagg
11088
11107
1
3


 


SEQ ID NO: 3664
ctgctttcctacaatgtgc
4313
4332
SEQ ID NO: 5005
gcacaccttgacattgcag
11087
11106
1
3


 


SEQ ID NO: 3665
tcctacaatgtgcaaggat
4319
4338
SEQ ID NO: 5006
atccgctggctctgaagga
8577
8596
1
3


 


SEQ ID NO: 3666
tatgaccacaagaatacgt
4352
4371
SEQ ID NO: 5007
acgtccgtgtgccttcata
9984
10003
1
3


 


SEQ ID NO: 3667
atgaccacaagaatacgtc
4353
4372
SEQ ID NO: 5008
gacgtccgtgtgccttcat
9983
10002
1
3


 


SEQ ID NO: 3668
gaatacgtctacactatca
4363
4382
SEQ ID NO: 5009
tgattatctgaattcattc
6487
6506
1
3


 


SEQ ID NO: 3669
tttctagattcgaatatca
4406
4425
SEQ ID NO: 5010
tgatttacatgatttgaaa
6685
6704
1
3


 


SEQ ID NO: 3670
gattcgaatatcaaattca
4412
4431
SEQ ID NO: 5011
tgaagtagctgagaaaatc
7102
7121
1
3


 


SEQ ID NO: 3671
gaaacaacccagtctcaaa
4449
4468
SEQ ID NO: 5012
tttgaaaaattctcttttc
9214
9233
1
3


 


SEQ ID NO: 3672
cccagtctcaaaaggttta
4456
4475
SEQ ID NO: 5013
taaattcattactcctggg
11302
11321
1
3


 


SEQ ID NO: 3673
ctcaaaaggtttactaata
4462
4481
SEQ ID NO: 5014
tattcaaaactgagttgag
12231
12250
1
3


 


SEQ ID NO: 3674
tcaaaaggtttactaatat
4463
4482
SEQ ID NO: 5015
atattcaaaactgagttga
12230
12249
1
3


 


SEQ ID NO: 3675
aaaaggtttactaatattc
4465
4484
SEQ ID NO: 5016
gaatttgaaagttcgtttt
9280
9299
1
3


 


SEQ ID NO: 3676
gaaacagcatttgtttgtc
4543
4562
SEQ ID NO: 5017
gacagcatcttcgtgtttc
11214
11233
1
3


 


SEQ ID NO: 3677
atttgtttgtcaaagaagt
4551
4570
SEQ ID NO: 5018
acttaaaaaatataaaaat
8022
8041
1
3


 


SEQ ID NO: 3678
tcaagattgatgggcagtt
4569
4588
SEQ ID NO: 5019
aactctcaagtcaagttga
13422
13441
1
3


 


SEQ ID NO: 3679
ttcagagtctcttcgttct
4588
4605
SEQ ID NO: 5020
agaagatggcaaatttgaa
11995
12014
1
3


 


SEQ ID NO: 3680
cagagtctcttcgttctat
4588
4607
SEQ ID NO: 5021
atagcatggacttcttctg
8873
8892
1
3


 


SEQ ID NO: 3681
atgctaaaggcacatatgg
4605
4624
SEQ ID NO: 5022
ccatttgagatcacggcat
9245
9264
1
3


 


SEQ ID NO: 3682
gcacatatggcctgtcttg
4614
4633
SEQ ID NO: 5023
caagttggcaagtaagtgc
9372
9391
1
3


 


SEQ ID NO: 3683
gagtccaacctgaggttta
4667
4686
SEQ ID NO: 5024
taaagtgccacttttactc
6190
6209
1
3


 


SEQ ID NO: 3684
agtccaacctgaggtttaa
4668
4687
SEQ ID NO: 5025
ttaacagggaagatagact
9308
9327
1
3


 


SEQ ID NO: 3685
cctacctccaaggcaccaa
4692
4711
SEQ ID NO: 5026
ttggcaagtaagtgctagg
9376
9395
1
3


 


SEQ ID NO: 3686
gaagatggaaccctctccc
4730
4749
SEQ ID NO: 5027
gggaagaagaggcagcttc
12291
12310
1
3


 


SEQ ID NO: 3687
tgatctgcaaagtggcatc
4762
4781
SEQ ID NO: 5028
gatgaggaaactcagatca
12263
12282
1
3


 


SEQ ID NO: 3688
gatctgcaaagtggcatca
4763
4782
SEQ ID NO: 5029
tgatgaggaaactcagatc
12262
12281
1
3


 


SEQ ID NO: 3689
gcttccctaaagtatgaga
4793
4812
SEQ ID NO: 5030
tctcgtgtctaggaaaagc
5977
5996
1
3


 


SEQ ID NO: 3690
gtatgagaactacgagctg
4804
4823
SEQ ID NO: 5031
cagcttaagagacacatac
6920
6939
1
3


 


SEQ ID NO: 3691
tctaacaagatggatatga
4868
4887
SEQ ID NO: 5032
tcattttccaactaataga
13032
13051
1
3


 


SEQ ID NO: 3692
ctgctgcgttctgaatatc
4907
4926
SEQ ID NO: 5033
gatacaagaaaaactgcag
6901
6920
1
3


 


SEQ ID NO: 3693
tcattgaggttcttcagcc
4940
4959
SEQ ID NO: 5034
ggctcatatgctgaaatga
5348
5367
1
3


 


SEQ ID NO: 3694
ttctggatcactaaattcc
4953
4982
SEQ ID NO: 5035
ggaaggacaaggcccagaa
12549
12568
1
3


 


SEQ ID NO: 3695
ccatggtcttgagttaaat
4981
5000
SEQ ID NO: 5036
atttttattcctgccatgg
10103
10122
1
3


 


SEQ ID NO: 3696
tcttaggcactgacaaaat
5007
5026
SEQ ID NO: 5037
attttttgcaagttaaaga
14019
14038
1
3


 


SEQ ID NO: 3697
acaaggcgacactaaggat
5040
5059
SEQ ID NO: 5038
atccatgatctacatttgt
6794
6813
1
3


 


SEQ ID NO: 3698
tgcaacgaccaacttgaag
5083
5102
SEQ ID NO: 5039
cttcagggaacacaatgca
5185
5204
1
3


 


SEQ ID NO: 3699
caacttgaagtgtagtctc
5092
5111
SEQ ID NO: 5040
gagatgagagatgccgttg
6239
6258
1
3


 


SEQ ID NO: 3700
gctggagaatgagctgaat
5116
5135
SEQ ID NO: 5041
attctcttttcttttcagc
9222
9241
1
3


 


SEQ ID NO: 3701
gcagagcttggcctctctg
5135
5154
SEQ ID NO: 5042
cagatacaagaaaaactgc
6899
6918
1
3


 


SEQ ID NO: 3702
tctctggggcatctatgaa
5148
5167
SEQ ID NO: 5043
ttcattcaattgggagaga
6499
6518
1
3


 


SEQ ID NO: 3703
tctggggcatctatgaaat
5150
5169
SEQ ID NO: 5044
atttgtaagaaaatacaga
6436
6455
1
3


 


SEQ ID NO: 3704
aacacaatgcaaaattcag
5193
5212
SEQ ID NO: 5045
ctgaagcattaaaactgtt
7506
7525
1
3


 


SEQ ID NO: 3705
ctcacagagctatcactgg
5231
5250
SEQ ID NO: 5046
ccagatgctgaacagtgag
8149
8168
1
3


 


SEQ ID NO: 3706
tgggaagtgcttatcaggc
5247
5266
SEQ ID NO: 5047
gcctacgttccatgtccca
11356
11375
1
3


 


SEQ ID NO: 3707
ttcaaggtcagtcaagaag
5303
5322
SEQ ID NO: 5048
cttcagtgcagaatatgaa
11977
11996
1
3


 


SEQ ID NO: 3708
aatgacatgatgggctcat
5338
5355
SEQ ID NO: 5049
atgattatctgaattcatt
6486
6505
1
3


 


SEQ ID NO: 3709
gctcatatgctgaaatgaa
5349
5368
SEQ ID NO: 5050
ttcagccattgacatgagc
5746
5765
1
3


 


SEQ ID NO: 3710
atatgctgaaatgaaattt
5353
5372
SEQ ID NO: 5051
aaatagctattgctaatat
6702
6721
1
3


 


SEQ ID NO: 3711
tctgaacattgcaggctta
5386
5405
SEQ ID NO: 5052
taagaaccagaagatcaga
10996
11015
1
3


 


SEQ ID NO: 3712
gaacattgcaggcttatca
5389
5408
SEQ ID NO: 5053
tgatatcgacgtgaggttc
12490
12509
1
3


 


SEQ ID NO: 3713
tgcaggcttatcactggac
5395
5414
SEQ ID NO: 5054
gtcctggattccacatgca
11852
11871
1
3


 


SEQ ID NO: 3714
tcaaaacttgacaacattt
5420
5439
SEQ ID NO: 5055
aaattccttgacatgttga
7370
7389
1
3


 


SEQ ID NO: 3715
atttacagctctgacaagt
5435
5454
SEQ ID NO: 5056
acttaaaaaatataaaaat
8022
8041
1
3


 


SEQ ID NO: 3716
ctctgacaagttttataag
5443
5482
SEQ ID NO: 5057
cttacttgaattccaagag
10674
10693
1
3


 


SEQ ID NO: 3717
gttaatttacagctacagc
5488
5487
SEQ ID NO: 5058
gctgcatgtggctggtaac
5578
5597
1
3


 


SEQ ID NO: 3718
ttctctggtaactacttta
5491
5510
SEQ ID NO: 5059
taaaagattactttgagaa
7276
7294
1
3


 


SEQ ID NO: 3719
cctaaaaggagcctaccaa
5596
5815
SEQ ID NO: 5060
ttggcaagtaagtgctagg
9370
9395
1
3


 


SEQ ID NO: 3720
aaaaggagcctaccaaaat
5599
5618
SEQ ID NO: 5061
atttacaattgttgctttt
6271
6290
1
3


 


SEQ ID NO: 3721
aggagcctaccaaaataat
5602
5621
SEQ ID NO: 5062
attacctatgatttctcct
10127
10146
1
3


 


SEQ ID NO: 3722
ataatgaaataaaacacat
5616
5635
SEQ ID NO: 5063
atgtcaaacactttgttat
7065
7084
1
3


 


SEQ ID NO: 3723
aaaacacatctatgccatc
5626
5845
SEQ ID NO: 5064
gatgaagatgacgactttt
12158
12177
1
3


 


SEQ ID NO: 3724
tgctaaggttcagggtgtg
5686
5705
SEQ ID NO: 5065
cacaagtcgattcccagca
9087
9106
1
3


 


SEQ ID NO: 3725
gagtttagccatcggctca
5705
5724
SEQ ID NO: 5066
tgaggtgactcagagactc
7450
7469
1
3


 


SEQ ID NO: 3726
gctggcttcagccattgac
5740
5759
SEQ ID NO: 5067
gtcagtgaagttctccagc
8596
8616
1
3


 


SEQ ID NO: 3727
atttcagcaatgtcttccg
5790
5809
SEQ ID NO: 5068
cggagcatgggagtgaaat
8628
8647
1
3


 


SEQ ID NO: 3728
tttcagcaatgtcttccgt
5791
5810
SEQ ID NO: 5069
acggagcatgggagtgaaa
8627
8646
1
3


 


SEQ ID NO: 3729
ttcagcaatgtcttccgtt
5792
5811
SEQ ID NO: 5070
aacggagcatgggagtgaa
8628
8645
1
3


 


SEQ ID NO: 3730
cagcaatgtcttccgttct
5794
5813
SEQ ID NO: 5071
agaagtgtcttcaaagctg
12412
12431
1
3


 


SEQ ID NO: 3731
tgtcttccgttctgtaatg
5800
5819
SEQ ID NO: 5072
cattcaattgggagagaca
6501
8520
1
3


 


SEQ ID NO: 3732
gtcttccgttctgtaatgg
5801
5820
SEQ ID NO: 5073
ccattcagtctctcaagac
12975
12994
1
3


 


SEQ ID NO: 3733
atgggaaactcgctctctg
5859
5878
SEQ ID NO: 5074
cagataaaaaactcaccat
12213
12232
1
3


 


SEQ ID NO: 3734
ggagaacatactgggcagc
5879
5898
SEQ ID NO: 5075
gctgttttgaagactctcc
1088
1107
1
3


 


SEQ ID NO: 3735
gttgaaagcagaacctctg
5914
5933
SEQ ID NO: 5076
cagaattcataatcccaac
8274
8293
1
3


 


SEQ ID NO: 3736
gtctaggaaaagcatcagt
5983
6002
SEQ ID NO: 5077
actgcaagatttttcagac
13612
13631
1
3


 


SEQ ID NO: 3737
agcatcagtgcagctcttg
5993
6012
SEQ ID NO: 5078
caagaacctgttagttgct
13351
13370
1
3


 


SEQ ID NO: 3738
ttgaacacaaagtcagtgc
6009
6028
SEQ ID NO: 5079
gcacatcaatattgatcaa
6418
6437
1
3


 


SEQ ID NO: 3739
gcagacaggcacctggaaa
6046
6085
SEQ ID NO: 5080
tttcagatggcattgctgc
11610
11629
1
3


 


SEQ ID NO: 3740
gaaactcaagacccaattt
6061
6080
SEQ ID NO: 5081
aaatcccatccaggttttc
8037
8056
1
3


 


SEQ ID NO: 3741
acaatgaatacagccagga
6084
6103
SEQ ID NO: 5082
tcctttggctgtgctttgt
9682
9701
1
3


 


SEQ ID NO: 3742
cttggatgcttacaacact
6103
6122
SEQ ID NO: 5083
agtgaagttctccagcaag
8599
8618
1
3


 


SEQ ID NO: 3743
ttggcgtggagcttactgg
6132
6151
SEQ ID NO: 5084
ccagaattcataatcccaa
8273
8292
1
3


 


SEQ ID NO: 3744
cacttttactcagtgagcc
6198
6217
SEQ ID NO: 5085
ggctattgatgttagagtg
6988
7007
1
3


 


SEQ ID NO: 3745
tttagagatgagagatgcc
6235
6254
SEQ ID NO: 5086
ggcatgatgctcatttaaa
9177
9196
1
3


 


SEQ ID NO: 3746
gagaagccccaagaattta
6257
6276
SEQ ID NO: 5087
taaagccattcagtctctc
12970
12989
1
3


 


SEQ ID NO: 3747
caattgttgcttttgtaaa
6276
6295
SEQ ID NO: 5088
tttaaccagtcagatattg
10187
10206
1
3


 


SEQ ID NO: 3748
ttttgtaaagtatgataaa
6286
6305
SEQ ID NO: 5089
tttattgctgaatccaaaa
13655
13674
1
3


 


SEQ ID NO: 3749
ttgtaaagtatgataaaaa
6288
6307
SEQ ID NO: 5090
ttttgagaggaatcgacaa
6358
6377
1
3


 


SEQ ID NO: 3750
ttcactccattaacctccc
6315
6334
SEQ ID NO: 5091
gggaaaaaacaggcttgaa
9576
9595
1
3


 


SEQ ID NO: 3751
ttttgagaccttgcaagaa
6337
6358
SEQ ID NO: 5092
ttctctctatgggaaaaaa
9566
9585
1
3


 


SEQ ID NO: 3752
accttgcaagaatattttg
6344
6363
SEQ ID NO: 5093
caaaagaagcccaagaggt
12948
12967
1
3


 


SEQ ID NO: 3753
tcaatattgatcaatttgt
6423
6442
SEQ ID NO: 5094
acaaagcagattatgttga
11829
11848
1
3


 


SEQ ID NO: 3754
cagagcagccctgggaaaa
6451
6470
SEQ ID NO: 5095
ttttcagaccaactctctg
13522
13641
1
3


 


SEQ ID NO: 3755
cctgggaaaactcccacag
6460
6479
SEQ ID NO: 5096
ctgtctctggtcagccagg
7724
7743
1
3


 


SEQ ID NO: 3756
actcccacagcaagctaat
6469
6488
SEQ ID NO: 5097
attacacttcctttcgagt
12869
12888
1
3


 


SEQ ID NO: 3757
aattcattcaattgggaga
6497
6516
SEQ ID NO: 5098
tctcttcctccatggaatt
10479
10498
1
3


 


SEQ ID NO: 3758
ttcaattgggagagacaag
6503
6522
SEQ ID NO: 5099
cttggagtgccagtttgaa
11808
11827
1
3


 


SEQ ID NO: 3759
aggagaaactgactgctct
6534
6553
SEQ ID NO: 5100
agagcttatgggatttcct
11163
11182
1
3


 


SEQ ID NO: 3760
actgactgctctcacaaaa
6541
6560
SEQ ID NO: 5101
ttttggcaagctatacagt
8380
8399
1
3


 


SEQ ID NO: 3761
gactgctctcacaaaaaag
6544
6563
SEQ ID NO: 5102
ctttgtgagtttatcagtc
9695
9714
1
3


 


SEQ ID NO: 3762
cagacatatatgatacaat
6641
6660
SEQ ID NO: 5103
attggatatccaagatctg
1933
1952
1
3


 


SEQ ID NO: 3763
aatttgatcagtatattaa
6657
6676
SEQ ID NO: 5104
ttaaaagaaatcttcaatt
13815
13834
1
3


 


SEQ ID NO: 3764
tatgatttacatgatttga
6683
6702
SEQ ID NO: 5105
tcaatgattatatcccata
13128
13147
1
3


 


SEQ ID NO: 3765
tttgaaaatagctattgct
6697
6716
SEQ ID NO: 5106
agcacagaaaaaattcaaa
13864
13883
1
3


 


SEQ ID NO: 3766
ttgaaaatagctattgcta
6698
6717
SEQ ID NO: 5107
tagcacagaaaaaattcaa
13863
13882
1
3


 


SEQ ID NO: 3767
aatagctattgctaatatt
6703
6722
SEQ ID NO: 5108
aataaatggagtctttatt
14084
14103
1
3


 


SEQ ID NO: 3768
attattgatgaaatcattg
6719
6738
SEQ ID NO: 5109
caataccagaattcataat
8268
8287
1
3


 


SEQ ID NO: 3769
aaagtcttgatgagcacta
6747
6766
SEQ ID NO: 5110
tagtgattacacttccttt
12864
12883
1
3


 


SEQ ID NO: 3770
aagtcttgatgagcactat
6748
6767
SEQ ID NO: 5111
atagcaacactaactactt
8769
8788
1
3


 


SEQ ID NO: 3771
ttgatgagcactatcatat
6753
6772
SEQ ID NO: 5112
atatccaagatgagatcaa
13101
13120
1
3


 


SEQ ID NO: 3772
taattttagtaaaaacaat
6777
6796
SEQ ID NO: 5113
attgagattccctccatta
11702
11721
1
3


 


SEQ ID NO: 3773
ttttagtaaaaacaatcca
6780
6799
SEQ ID NO: 5114
tggagtgccagtttgaaaa
11810
11829
1
3


 


SEQ ID NO: 3774
acatttgtttattgaaaat
6805
6824
SEQ ID NO: 5115
atttcctaaagctggatgt
11175
11194
1
3


 


SEQ ID NO: 3775
attgattttaacaaaagtg
6824
6843
SEQ ID NO: 5116
cactgttccagttgtcaat
9871
9890
1
3


 


SEQ ID NO: 3776
attttaacaaaagtggaag
6826
6847
SEQ ID NO: 5117
cttcaaagacttaaaaaat
8014
8033
1
3


 


SEQ ID NO: 3777
aaatcagaatccagataca
6888
6907
SEQ ID NO: 5118
tgtaccataagccatattt
10088
10107
1
3


 


SEQ ID NO: 3778
gaatccagatacaagaaaa
6894
6913
SEQ ID NO: 5119
ttttctaaacttgaaattc
9065
9084
1
3


 


SEQ ID NO: 3779
ttaagagacacatacagaa
6924
6943
SEQ ID NO: 5120
ttcttaaacattcctttaa
9491
9510
1
3


 


SEQ ID NO: 3780
atccagcacctagctggaa
6950
6969
SEQ ID NO: 5121
ttccaatttccctgtggat
3688
3707
1
3


 


SEQ ID NO: 3781
tgagcatgtcaaacacttt
7060
7079
SEQ ID NO: 5122
aaagtgccacttttactca
6191
6210
1
3


 


SEQ ID NO: 3782
gagcatgtcaaacactttg
7061
7080
SEQ ID NO: 5123
caaatgacatgatgggctc
5334
5353
1
3


 


SEQ ID NO: 3783
aaacactttgttataaatc
7070
7089
SEQ ID NO: 5124
gattatatcccatatgttt
13133
13152
1
3


 


SEQ ID NO: 3784
tgagaaaatcaatgccttc
7111
7130
SEQ ID NO: 5125
gaaggaaaagcgcacctca
12029
12048
1
3


 


SEQ ID NO: 3785
tatgaagtagaccaacaaa
7160
7179
SEQ ID NO: 5126
tttgtggagggtagtcata
10331
10350
1
3


 


SEQ ID NO: 3786
aagtagaccaacaaatcca
7164
7183
SEQ ID NO: 5127
tggatgaagatgacgactt
12156
12175
1
3


 


SEQ ID NO: 3787
aagttgaaggagactattc
7223
7242
SEQ ID NO: 5128
gaataccaatgctgaactt
10168
10187
1
3


 


SEQ ID NO: 3788
acaagttaagataaaagat
7264
7283
SEQ ID NO: 5129
atctaaattcagttcttgt
11334
11353
1
3


 


SEQ ID NO: 3789
aagataaaagattactttg
7271
7290
SEQ ID NO: 5130
caaaatagaagggaatctt
2077
2096
1
3


 


SEQ ID NO: 3790
gattactttgagaaattag
7280
7299
SEQ ID NO: 5131
ctaaacttgaaattcaatc
9069
9088
1
3


 


SEQ ID NO: 3791
tgagaaattagttggattt
7288
7307
SEQ ID NO: 5132
aaatccgtgaggtgactca
7443
7462
1
3


 


SEQ ID NO: 3792
aaattagttggatttattg
7292
7311
SEQ ID NO: 5133
caattttgagaatgaattt
10419
10438
1
3


 


SEQ ID NO: 3793
tggatttattgatgatgct
7300
7319
SEQ ID NO: 5134
agcatgcctagtttctcca
9953
9972
1
3


 


SEQ ID NO: 3794
tcattgaagatgttaacaa
7353
7372
SEQ ID NO: 5135
ttgtagatgaaaccaatga
7422
7441
1
3


 


SEQ ID NO: 3795
cattgaagatgttaacaaa
7354
7373
SEQ ID NO: 5136
tttgtagatgaaaccaatg
7421
7440
1
3


 


SEQ ID NO: 3796
attgaagatgttaacaaat
7355
7374
SEQ ID NO: 5137
atttaagtatgatttcaat
10495
10514
1
3


 


SEQ ID NO: 3797
ttgaagatgttaacaaatt
7356
7375
SEQ ID NO: 5138
aatttaagtatgatttcaa
10494
10513
1
3


 


SEQ ID NO: 3798
tgaagatgttaacaaattc
7357
7376
SEQ ID NO: 5139
gaatttaagtatgatttca
10493
10512
1
3


 


SEQ ID NO: 3799
acatgttgataaagaaatt
7380
7399
SEQ ID NO: 5140
aattccctgaagttgatgt
11487
11506
1
3


 


SEQ ID NO: 3800
tttgattaccaccagtttg
7406
7425
SEQ ID NO: 5141
caaattgaacatccccaaa
8791
8810
1
3


 


SEQ ID NO: 3801
caaaatccgtgaggtgact
7441
7460
SEQ ID NO: 5142
agtccccctaacagatttg
7972
7991
1
3


 


SEQ ID NO: 3802
aaaatccgtgaggtgactc
7442
7461
SEQ ID NO: 5143
gagtgaaatgctgtttttt
8638
8657
1
3


 


SEQ ID NO: 3803
aggtgactcagagactcaa
7452
7471
SEQ ID NO: 5144
ttgatgatatctggaacct
10731
10750
1
3


 


SEQ ID NO: 3804
gtgaaattcaggctctgga
7473
7492
SEQ ID NO: 5145
tccaatctcctcttttcac
8409
8428
1
3


 


SEQ ID NO: 3805
gttgcagtgtatctggaaa
7547
7566
SEQ ID NO: 5146
tttcaagcaaatgcacaac
8540
8559
1
3


 


SEQ ID NO: 3806
ttaagttcagcatctttgg
7616
7635
SEQ ID NO: 5147
ccaatgctgaactttttaa
10173
10192
1
3


 


SEQ ID NO: 3807
tgaaggccaaattccgaga
7641
7660
SEQ ID NO: 5148
tctcctttcttcatcttca
10213
10232
1
3


 


SEQ ID NO: 3808
aatgtatcaaatggacatt
7684
7703
SEQ ID NO: 5149
aatgaagtccggattcatt
11021
11040
1
3


 


SEQ ID NO: 3809
attcagcaggaacttcaac
7700
7719
SEQ ID NO: 5150
gttgagaagccccaagaat
6254
6273
1
3


 


SEQ ID NO: 3810
acctgtctctggtcagcca
7722
7741
SEQ ID NO: 5151
tggcaagtaagtgctaggt
9377
9396
1
3


 


SEQ ID NO: 3811
cctgtctctggtcagccag
7723
7742
SEQ ID NO: 5152
ctggacttctctagtcagg
8810
8829
1
3


 


SEQ ID NO: 3812
ggtcagccaggtttatagc
7732
7751
SEQ ID NO: 5153
gctaaaggagcagttgacc
10535
10554
1
3


 


SEQ ID NO: 3813
ccaggtttatagcacactt
7738
7757
SEQ ID NO: 5154
aagtccggattcattctgg
11025
11044
1
3


 


SEQ ID NO: 3814
gtttatagcacacttgtca
7742
7761
SEQ ID NO: 5155
tgacctgtccattcaaaac
13681
13700
1
3


 


SEQ ID NO: 3815
acttgtcacctacatttct
7753
7772
SEQ ID NO: 5156
agaaaaaggggattgaagt
10283
10302
1
3


 


SEQ ID NO: 3816
ctgattggtggactcttgc
7770
7789
SEQ ID NO: 5157
gcaagttaaagaaaatcag
14026
14045
1
3


 


SEQ ID NO: 3817
atgaaagcattggtagagc
7847
7866
SEQ ID NO: 5158
gctcatctcctttcttcat
10208
10227
1
3


 


SEQ ID NO: 3818
tgaaagcattggtagagca
7848
7867
SEQ ID NO: 5159
tgctcatctcctttcttca
10207
10226
1
3


 


SEQ ID NO: 3819
gggttcactgttcctgaaa
7868
7887
SEQ ID NO: 5160
tttcaccatagaaggaccc
8959
8978
1
3


 


SEQ ID NO: 3820
tcaagaccatccttgggac
7887
7906
SEQ ID NO: 5161
gtccccctaacagatttga
7973
7992
1
3


 


SEQ ID NO: 3821
ccttgggaccatgcctgcc
7897
7916
SEQ ID NO: 5162
ggcaccagggctcggaagg
13978
13997
1
3


 


SEQ ID NO: 3822
ttcaggctcttcagaaagc
7929
7948
SEQ ID NO: 5163
gcttgaaggaattcttgaa
9588
9607
1
3


 


SEQ ID NO: 3823
ttcagataaacttcaaaga
8004
8023
SEQ ID NO: 5164
tcttcataagttcaatgaa
13183
13202
1
3


 


SEQ ID NO: 3824
acttcaaagacttaaaaaa
8013
8032
SEQ ID NO: 5165
ttttaacaaaagtggaagt
6829
6848
1
3


 


SEQ ID NO: 3825
atcccatccaggttttcca
8039
8058
SEQ ID NO: 5166
tggagaagcaaatctggat
9472
9491
1
3


 


SEQ ID NO: 3826
gaatttaccatccttaaca
8063
8082
SEQ ID NO: 5167
tgttgaagtgtctccattc
9889
9908
1
3


 


SEQ ID NO: 3827
cattccttcctttacaatt
8089
8108
SEQ ID NO: 5168
aattccaattttgagaatg
10414
10433
1
3


 


SEQ ID NO: 3828
ttgaccagatgctgaacag
8145
8164
SEQ ID NO: 5169
ctgttgaaagatttatcaa
12932
12951
1
3


 


SEQ ID NO: 3829
aatcaccctgccagacttc
8233
8252
SEQ ID NO: 5170
gaagttctcaattttgatt
8522
8541
1
3


 


SEQ ID NO: 3830
tgaccttcacataccagaa
8320
8339
SEQ ID NO: 5171
ttcttctggaaaagggtca
8884
8903
1
3


 


SEQ ID NO: 3831
ttccagcttccccacatct
8339
8358
SEQ ID NO: 5172
agattctcagatgagggaa
8921
8940
1
3


 


SEQ ID NO: 3832
aagctatacagtattctga
8387
8406
SEQ ID NO: 5173
tcagatggcattgctgctt
11612
11631
1
3


 


SEQ ID NO: 3833
attctgaaaatccaatctc
8399
8418
SEQ ID NO: 5174
gagataaccgtgcctgaat
11552
11571
1
3


 


SEQ ID NO: 3834
tttcacattagatgcaaat
8422
8441
SEQ ID NO: 5175
attttgaaaaaaacagaaa
9738
9757
1
3


 


SEQ ID NO: 3835
caaatgctgacatagggaa
8436
8455
SEQ ID NO: 5176
ttccatcacaaatcctttg
9670
9689
1
3


 


SEQ ID NO: 3836
gagagtccaaattagaagt
8508
8527
SEQ ID NO: 5177
actttacttcccaactctc
13410
13429
1
3


 


SEQ ID NO: 3837
agagtccaaattagaagtt
8509
8528
SEQ ID NO: 5178
aactttacttcccaactct
13409
13428
1
3


 


SEQ ID NO: 3838
tctcaattttgattttcaa
8527
8546
SEQ ID NO: 5179
ttgattcccttttttgaga
11537
11556
1
3


 


SEQ ID NO: 3839
caattttgattttcaagca
8530
8549
SEQ ID NO: 5180
tgctgaatccaaaagattg
13660
13679
1
3


 


SEQ ID NO: 3840
aatgcacaactctcaaacc
8549
8568
SEQ ID NO: 5181
ggtttatcaaggggccatt
12460
12479
1
3


 


SEQ ID NO: 3841
agttctccagcaagtacct
8604
8623
SEQ ID NO: 5182
aggttccatcgtgcaaact
11388
11407
1
3


 


SEQ ID NO: 3842
agtacctgagaacggagca
8616
8635
SEQ ID NO: 5183
tgctccaggagaacttact
13780
13799
1
3


 


SEQ ID NO: 3843
tcaaacacagtggcaagtt
8678
8697
SEQ ID NO: 5184
aactctcaagtcaagttga
13422
13441
1
3


 


SEQ ID NO: 3844
acaatcagcttaccctgga
8751
8770
SEQ ID NO: 5185
tccattctgaatatattgt
13380
13399
1
3


 


SEQ ID NO: 3845
ctggatagcaacactaaat
8765
8784
SEQ ID NO: 5186
attttctgaacttccccag
12702
12721
1
3


 


SEQ ID NO: 3846
ctgacctgcgcaacgagat
8829
8848
SEQ ID NO: 5187
atctgatgaggaaactcag
12259
12278
1
3


 


SEQ ID NO: 3847
agatgagggaacacatgaa
8929
8948
SEQ ID NO: 5188
ttcatgtccctagaaatct
10038
10057
1
3


 


SEQ ID NO: 3848
tcaacttttctaaacttga
9060
9079
SEQ ID NO: 5189
tcaaggataacgtgtttga
12618
12637
1
3


 


SEQ ID NO: 3849
ttctaaacttgaaattcaa
9067
9086
SEQ ID NO: 5190
ttgatgatgctgtcaagaa
7308
7327
1
3


 


SEQ ID NO: 3850
gaaattcaatcacaagtcg
9077
9096
SEQ ID NO: 5191
cgacgaagaaaataatttc
13566
13585
1
3


 


SEQ ID NO: 3851
cactgtttggagaagggaa
9141
9160
SEQ ID NO: 5192
ttccagaaagcagccagtg
12506
12525
1
3


 


SEQ ID NO: 3852
actgtttggagaagggaag
9142
9161
SEQ ID NO: 5193
cttccccaaagagaccagt
2898
2917
1
3


 


SEQ ID NO: 3853
aattctcttttcttttcag
9221
9240
SEQ ID NO: 5194
ctgattactatgaaaaatt
13638
13657
1
3


 


SEQ ID NO: 3854
ttcttttcagcccagccat
9230
9249
SEQ ID NO: 5195
atggaaaagggaaagagaa
13494
13513
1
3


 


SEQ ID NO: 3855
tttgaaagttcgttttcca
9283
9302
SEQ ID NO: 5196
tggaagtgtcagtggcaaa
10380
10399
1
3


 


SEQ ID NO: 3856
cagggaagatagacttcct
9312
9331
SEQ ID NO: 5197
aggacctttcaaattcctg
9848
9867
1
3


 


SEQ ID NO: 3857
ataagtacaaccaaaattt
9405
9424
SEQ ID NO: 5198
aaatcaggatctgagttat
14038
14057
1
3


 


SEQ ID NO: 3858
acaacgagaacattatgga
9435
9454
SEQ ID NO: 5199
tccattctgaatatattgt
13380
13399
1
3


 


SEQ ID NO: 3859
aggaataaatggagaagca
9463
9482
SEQ ID NO: 5200
tgctggaattgtcattcct
11734
11753
1
3


 


SEQ ID NO: 3860
agcaaatctggatttctta
9478
9497
SEQ ID NO: 5201
taagttctctgtacctgct
11719
11738
1
3


 


SEQ ID NO: 3861
tcctttaacaattcctgaa
9502
9521
SEQ ID NO: 5202
ttcaaaacgagcttcagga
13206
13225
1
3


 


SEQ ID NO: 3862
tttaacaattcctgaaatg
9505
9524
SEQ ID NO: 5203
catttgatttaagtgtaaa
9621
9640
1
3


 


SEQ ID NO: 3863
acacaataatcacaactcc
9534
9553
SEQ ID NO: 5204
ggagacagcatcttcgtgt
11211
11230
1
3


 


SEQ ID NO: 3864
aagatttctctctatggga
9561
9580
SEQ ID NO: 5205
tcccagaaaacctcttctt
3936
3955
1
3


 


SEQ ID NO: 3865
gaaaaaacaggcttgaagg
9578
9597
SEQ ID NO: 5206
ccttttacaattcattttc
13021
13040
1
3


 


SEQ ID NO: 3866
ttgaaggaattcttgaaaa
9590
9609
SEQ ID NO: 5207
ttttgagaatgaatttcaa
10422
10441
1
3


 


SEQ ID NO: 3867
tgaaggaattcttgaaaac
9591
9610
SEQ ID NO: 5208
gttttggctgataaattca
11291
11310
1
3


 


SEQ ID NO: 3868
agctcagtataagaaaaac
9640
9659
SEQ ID NO: 5209
gtttgataagtacaaagct
9805
9824
1
3


 


SEQ ID NO: 3869
tcaaatcctttgacaggca
9720
9739
SEQ ID NO: 5210
tgcctgagcagaccattga
11688
11707
1
3


 


SEQ ID NO: 3870
atgaaacaaaaattaagtt
9789
9808
SEQ ID NO: 5211
aactttgcactatgttcat
12762
12781
1
3


 


SEQ ID NO: 3871
aattcctggatacactgtt
9859
9878
SEQ ID NO: 5212
aacacatgaatcacaaatt
8938
8957
1
3


 


SEQ ID NO: 3872
ttccagttgtcaatgttga
9876
9895
SEQ ID NO: 5213
tcaaaacgagcttcaggaa
13207
13226
1
3


 


SEQ ID NO: 3873
aagtgtctccattcaccat
9894
9913
SEQ ID NO: 5214
atgggaagtataagaactt
4842
4861
1
3


 


SEQ ID NO: 3874
gtcagcatgcctagtttct
9950
9969
SEQ ID NO: 5215
agaaaaggcacaccttgac
11080
11099
1
3


 


SEQ ID NO: 3875
ctgccatgggcaatattac
10113
10132
SEQ ID NO: 5216
gtaagaaaatacagagcag
6440
6459
1
3


 


SEQ ID NO: 3876
tgaataccaatgctgaact
10167
10186
SEQ ID NO: 5217
agttgaaggagactattca
7224
7243
1
3


 


SEQ ID NO: 3877
tattgttgctcatctcctt
10201
10220
SEQ ID NO: 5218
aaggaaacataaactaata
12889
12908
1
3


 


SEQ ID NO: 3878
tgttgctcatctcctttct
10204
10223
SEQ ID NO: 5219
agaagaaatctgcagaaca
12431
12450
1
3


 


SEQ ID NO: 3879
tctgtcattgatgcactgc
10232
10251
SEQ ID NO: 5220
gcagtagactataagcaga
13928
13947
1
3


 


SEQ ID NO: 3880
ccacagctctgtctctgag
10305
10324
SEQ ID NO: 5221
ctcagggatctgaaggtgg
8195
8214
1
3


 


SEQ ID NO: 3881
atttgtggagggtagtcat
10330
10349
SEQ ID NO: 5222
atgaagtagaccaacaaat
7161
7180
1
3


 


SEQ ID NO: 3882
atatggaagtgtcagtggc
10377
10396
SEQ ID NO: 5223
gccacactccaacgcatat
10778
10797
1
3


 


SEQ ID NO: 3883
tggaaataccaagtcaaaa
10453
10472
SEQ ID NO: 5224
ttttacaattcattttcca
13023
13042
1
3


 


SEQ ID NO: 3884
aagtcaaaacctactgtct
10463
10482
SEQ ID NO: 5225
agacctagtgattacactt
12859
12878
1
3


 


SEQ ID NO: 3885
actgtctcttcctccatgg
10475
10494
SEQ ID NO: 5226
ccatgcaagtcagcccagt
10924
10943
1
3


 


SEQ ID NO: 3886
cttcctccatggaatttaa
10482
10501
SEQ ID NO: 5227
ttaatcgagaggtatgaag
7148
7167
1
3


 


SEQ ID NO: 3887
attcttcaatgctgtactc
10512
10531
SEQ ID NO: 5228
gagttgagggtccgggaat
12242
12261
1
3


 


SEQ ID NO: 3888
ttgaccacaagcttagctt
10548
10567
SEQ ID NO: 5231
aagcgcacctcaatatcaa
12036
12055
1
3


 


SEQ ID NO: 3889
cctcacctcttacttttcc
10573
10592
SEQ ID NO: 5232
ggaactattgctagtgagg
10649
10668
1
3


 


SEQ ID NO: 3890
agctgcagggcacttccaa
10710
10729
SEQ ID NO: 5233
ttgggaagaagaggcagct
12289
12308
1
3


 


SEQ ID NO: 3891
ttccaaaattgatgatatc
10723
10742
SEQ ID NO: 5234
gatatacactagggaggaa
12745
12764
1
3


 


SEQ ID NO: 3892
gagaacatacaagcaaagc
10860
10879
SEQ ID NO: 5235
gcttggttttgccagtctc
2467
2486
1
3


 


SEQ ID NO: 3893
atggcaaatgtcagctctt
10897
10916
SEQ ID NO: 5236
aagaggtatttaaagccat
12960
12979
1
3


 


SEQ ID NO: 3894
tggcaaatgtcagctcttg
10898
10917
SEQ ID NO: 5237
caagaggtatttaaagcca
12959
12978
1
3


 


SEQ ID NO: 3895
ttgttcaggtccatgcaag
10914
10933
SEQ ID NO: 5238
cttgggggaggaggaacaa
14066
14085
1
3


 


SEQ ID NO: 3896
tgttcaggtccatgcaagt
10915
10934
SEQ ID NO: 5239
acttgggggaggaggaaca
14065
14084
1
3


 


SEQ ID NO: 3897
agttccttccatgatttcc
10940
10959
SEQ ID NO: 5240
ggaatctgatgaggaaact
12256
12275
1
3


 


SEQ ID NO: 3898
tgctaacactaagaaccag
10987
11006
SEQ ID NO: 5241
ctggatgtaaccaccagca
11186
11205
1
3


 


SEQ ID NO: 3899
actaagaaccagaagatca
10994
11013
SEQ ID NO: 5242
tgatcaagaacctgttagt
13347
13366
1
3


 


SEQ ID NO: 3900
ctaagaaccagaagatcag
10995
11014
SEQ ID NO: 5243
ctgatcaagaacctgttag
13346
13365
1
3


 


SEQ ID NO: 3901
cagaagatcagatggaaaa
11003
11022
SEQ ID NO: 5244
ttttcagaccaactctctg
13622
13641
1
3


 


SEQ ID NO: 3902
aaaaatgaagtccggattc
11018
11037
SEQ ID NO: 5245
gaatttgaaagttcgtttt
9280
9299
1
3


 


SEQ ID NO: 3903
gattcattctgggtctttc
11032
11051
SEQ ID NO: 5246
gaaaacctatgccttaatc
13166
13185
1
3


 


SEQ ID NO: 3904
aagaaaaggcacaccttga
11079
11095
SEQ ID NO: 5247
tcaaaacctactgtctctt
10466
10485
1
3


 


SEQ ID NO: 3905
aaggacacctaaggttcct
11115
11134
SEQ ID NO: 5248
aggacaccaaaataacctt
7572
7591
1
3


 


SEQ ID NO: 3906
ccagcattggtaggagaca
11199
11218
SEQ ID NO: 5249
tgtcaacaagtaccactgg
12370
12389
1
3


 


SEQ ID NO: 3907
ctttgtgtacaccaaaaac
11239
11258
SEQ ID NO: 5250
gtttttaaattgttgaaag
13148
13167
1
3


 


SEQ ID NO: 3908
ccatccctgtaaaagtttt
11277
11296
SEQ ID NO: 5251
aaaagggtcatggaaatgg
8893
8912
1
3


 


SEQ ID NO: 3909
tgatctaaattcagttctt
11332
11351
SEQ ID NO: 5252
aagatagtcagtctgatca
13334
13353
1
3


 


SEQ ID NO: 3910
aagaagctgagaacttcat
11432
11451
SEQ ID NO: 5253
atgagatcaacacaatctt
13110
13129
1
3


 


SEQ ID NO: 3911
tttgccctcaacctaccaa
11453
11472
SEQ ID NO: 5254
ttggtacgagttactcaaa
12641
12660
1
3


 


SEQ ID NO: 3912
cttgattcccttttttgag
11536
11555
SEQ ID NO: 5255
ctcaattttgattttcaag
8628
8547
1
3


 


SEQ ID NO: 3913
ttcacgcttccaaaaagtg
11591
11610
SEQ ID NO: 5256
cactcattgattttctgaa
12693
12712
1
3


 


SEQ ID NO: 3914
tgtttcagatggcattgct
11608
11627
SEQ ID NO: 5257
agcagattatgttgaaaca
11833
11852
1
3


 


SEQ ID NO: 3915
aatgcagtagccaacaaga
11639
11658
SEQ ID NO: 5258
tcttttcagcccagccatt
9231
9250
1
3


 


SEQ ID NO: 3916
ctgagcagaccattgagat
11691
11710
SEQ ID NO: 5259
atctgatgaggaaactcag
12259
12278
1
3


 


SEQ ID NO: 3917
tgagcagaccattgagatt
11692
11711
SEQ ID NO: 5260
aatctgatgaggaaactca
12258
12277
1
3


 


SEQ ID NO: 3918
ttgagattccctccattaa
11703
11722
SEQ ID NO: 5261
ttaatcttcataagttcaa
13179
13198
1
3


 


SEQ ID NO: 3919
acttggagtgccagtttga
11807
11826
SEQ ID NO: 5262
tcaattgggagagacaagt
6504
6523
1
3


 


SEQ ID NO: 3920
caaatttgaaggacttcag
12004
12023
SEQ ID NO: 5263
ctgagaacttcatcatttg
11438
11457
1
3


 


SEQ ID NO: 3921
agcccagcgttcaccgatc
12056
12075
SEQ ID NO: 5264
gatccaagtatagttggct
13286
13305
1
3


 


SEQ ID NO: 3922
cagcgttcaccgatctcca
12060
12079
SEQ ID NO: 5265
tggacctgcaccaaagctg
13960
13979
1
3


 


SEQ ID NO: 3923
ctccatctgcgctaccaga
12074
12093
SEQ ID NO: 5266
tctgatatacatcacggag
13711
13730
1
3


 


SEQ ID NO: 3924
atgaggaaactcagatcaa
12264
12283
SEQ ID NO: 5267
ttgagttgcccaccatcat
11667
11686
1
3


 


SEQ ID NO: 3925
aggcagcttctggcttgct
12300
12319
SEQ ID NO: 5268
agcaagtctttcctggcct
3018
3037
1
3


 


SEQ ID NO: 3926
tgaaagacaacgtgcccaa
12327
12346
SEQ ID NO: 5269
ttgggagagacaagtttca
6508
6527
1
3


 


SEQ ID NO: 3927
tatgattatgtcaacaagt
12362
12381
SEQ ID NO: 5270
actttgcactatgttcata
12763
12782
1
3


 


SEQ ID NO: 3928
cattaggcaaattgatgat
12475
12494
SEQ ID NO: 5271
atcaacacaatcttcaatg
13115
13134
1
3


 


SEQ ID NO: 3929
ttgactcaggaaggccaag
12584
12603
SEQ ID NO: 5272
cttggtacgagttactcaa
12640
12659
1
3


 


SEQ ID NO: 3930
gaaacctgggatatacact
12736
12755
SEQ ID NO: 5273
agtgattacacttcctttc
12865
12884
1
3


 


SEQ ID NO: 3931
tcctttcgagttaaggaaa
12877
12896
SEQ ID NO: 5274
tttctgccactgctcagga
13524
13543
1
3


 


SEQ ID NO: 3932
gccattcagtctctcaaga
12974
12993
SEQ ID NO: 5275
tcttccgttctgtaatggc
5802
5821
1
3


 


SEQ ID NO: 3933
gtgctacgtaatcttcagg
13001
13020
SEQ ID NO: 5276
cctgcaccaaagctggcac
13964
13983
1
3


 


SEQ ID NO: 3934
agctgaaagagatgaaatt
13065
13084
SEQ ID NO: 5277
aatttattcaaaacgagct
13200
13219
1
3


 


SEQ ID NO: 3935
aatttacttatcttattaa
13080
13099
SEQ ID NO: 5278
ttaaaagaaatcttcaatt
13815
13834
1
3


 


SEQ ID NO: 3936
ttttaaattgttgaaagaa
13150
13169
SEQ ID NO: 5279
ttctctctatgggaaaaaa
9566
9585
1
3


 


SEQ ID NO: 3937
taatcttcataagttcaat
13180
13199
SEQ ID NO: 5280
attgagattccctccatta
11702
11721
1
3


 


SEQ ID NO: 3938
atattttgatccaagtata
13279
13298
SEQ ID NO: 5281
tataagcagaagcacatat
13937
13956
1
3


 


SEQ ID NO: 3939
tgaaatattatgaacttga
13311
13330
SEQ ID NO: 5282
tcaaccttaatgattttca
8295
8314
1
3


 


SEQ ID NO: 3940
caatttctgcacagaaata
13442
13461
SEQ ID NO: 5283
tattcttcttttccaattg
13834
13853
1
3


 


SEQ ID NO: 3941
agaagattgcagagctttc
13509
13528
SEQ ID NO: 5284
gaaatcttcaatttattct
13821
13840
1
3


 


SEQ ID NO: 3942
gaagaaaataatttctgat
13570
13589
SEQ ID NO: 5285
atcagttcagataaacttc
7999
8018
1
3


 


SEQ ID NO: 3943
ttgacctgtccattcaaaa
13680
13699
SEQ ID NO: 5286
ttttgagaatgaatttcaa
10422
10441
1
3


 


SEQ ID NO: 3944
tcaaaactaccacacattt
13693
13712
SEQ ID NO: 5287
aaattccttgacatgttga
7370
7389
1
3


 


SEQ ID NO: 3945
ttttttaaaagaaatcttc
13811
13830
SEQ ID NO: 5288
gaagtgtcagtggcaaaaa
10382
10401
1
3


 


SEQ ID NO: 3946
aggatctgagttattttgc
14043
14062
SEQ ID NO: 5289
gcaagggttcactgttcct
7864
7883
1
3


 


SEQ ID NO: 3947
tttgctaaacttgggggag
14057
14076
SEQ ID NO: 5290
ctccccaggacctttcaaa
9842
9861
1
3
















TABLE 10







Selected palindromic sequences from human glucose-6-phosphatase


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B




















SEQ ID NO: 5291
tccatcttcaggaagctgt
222
241
SEQ ID NO: 5369
acagactctttcagatgga
1340
1359
1
6


 


SEQ ID NO: 5292
ccatcttcaggaagctgtg
223
242
SEQ ID NO: 5370
cacagactctttcagatgg
1339
1358
1
6


 


SEQ ID NO: 5293
cctctggccatgccatggg
417
436
SEQ ID NO: 5371
cccattttgaggccagagg
1492
1511
1
6


 


SEQ ID NO: 5294
ctctggccatgccatgggc
418
437
SEQ ID NO: 5372
gcccattttgaggccagag
1491
1510
1
6


 


SEQ ID NO: 5295
ttgaatgtcattttgtggt
521
540
SEQ ID NO: 5373
accatacattatcattcaa
2945
2964
1
6


 


SEQ ID NO: 5296
tcagtaatgggggaccagc
1886
1905
SEQ ID NO: 5374
gctggtctcgaactcctga
2731
2750
1
6


 


SEQ ID NO: 5297
ttttactgtgcatacatgt
1956
1975
SEQ ID NO: 5375
acatctttgaaaagaaaaa
2983
3002
1
6


 


SEQ ID NO: 5298
tgaggtgccaaggaaatga
50
69
SEQ ID NO: 5376
tcatgtctcagcctcctca
2620
2639
1
5


 


SEQ ID NO: 5299
gaggtgccaaggaaatgag
51
70
SEQ ID NO: 5377
ctcatgtctcagcctcctc
2619
2638
1
5


 


SEQ ID NO: 5300
gggaaagataaagccgacc
487
506
SEQ ID NO: 5378
ggtcgcctggcttattccc
1295
1314
1
5


 


SEQ ID NO: 5301
ttttcctcatcaagttgtt
598
617
SEQ ID NO: 5379
aacatctttgaaaagaaaa
2982
3001
1
5


 


SEQ ID NO: 5302
ctttcagccacatccacag
651
670
SEQ ID NO: 5380
ctgtggactctggagaaag
773
792
1
5


 


SEQ ID NO: 5303
tggactctggagaaagccc
776
795
SEQ ID NO: 5381
gggctggctctcaactcca
884
903
1
5


 


SEQ ID NO: 5304
agcctcctcaagaacctgg
848
867
SEQ ID NO: 5382
ccagattcttccactggct
2107
2126
1
5


 


SEQ ID NO: 5305
ggcctggggctggctctca
878
897
SEQ ID NO: 5383
tgagccaccgcaccgggcc
2801
2820
1
5


 


SEQ ID NO: 5306
gagctcactcccactggaa
1439
1458
SEQ ID NO: 5384
ttccaggtagggccagctc
1676
1695
1
5


 


SEQ ID NO: 5307
agctaatgaagctattgag
1572
1591
SEQ ID NO: 5385
ctcagcctcctcagtagct
2626
2645
1
5


 


SEQ ID NO: 5308
gctaatgaagctattgaga
1573
1592
SEQ ID NO: 5386
tctcagcctcctcagtagc
2625
2644
1
5


 


SEQ ID NO: 5309
ctaaatggctttaattata
1854
1873
SEQ ID NO: 5387
tatatttttagaattttag
2683
2702
1
5


 


SEQ ID NO: 5310
ctgcttttctttttttttc
2509
2528
SEQ ID NO: 5388
gaaaaatatatatgtgcag
2996
3015
1
5


 


SEQ ID NO: 5311
caatcaccaccaagcctgg
0
19
SEQ ID NO: 5389
ccagaatgggtccacattg
812
831
1
4


 


SEQ ID NO: 5312
agcctggaataactgcaag
12
31
SEQ ID NO: 5390
cttggatttctgaatggct
1987
2006
1
4


 


SEQ ID NO: 5313
gttccatcttcaggaagct
220
239
SEQ ID NO: 5391
agctcactcccactggaac
1440
1459
1
4


 


SEQ ID NO: 5314
tggtgggttttggatactg
326
345
SEQ ID NO: 5392
cagtcctcccaccctacca
2425
2444
1
4


 


SEQ ID NO: 5315
acctgtgagactggaccag
392
411
SEQ ID NO: 5393
ctggagaaagcccagaggt
782
801
1
4


 


SEQ ID NO: 5316
gctgttacagaaactttca
638
657
SEQ ID NO: 5394
tgaatggtcttctgccagc
1474
1493
1
4


 


SEQ ID NO: 5317
acagcatctataatgccag
666
685
SEQ ID NO: 5395
ctgggtgtagacctcctgt
758
777
1
4


 


SEQ ID NO: 5318
gggtgtagacctcctgtgg
760
779
SEQ ID NO: 5396
ccacattgacaccacaccc
823
842
1
4


 


SEQ ID NO: 5319
ggtgtagacctcctgtgga
761
780
SEQ ID NO: 5397
tccacattgacaccacacc
822
841
1
4


 


SEQ ID NO: 5320
gtgtagacctcctgtggac
762
781
SEQ ID NO: 5398
gtccacattgacaccacac
821
840
1
4


 


SEQ ID NO: 5321
gacctcctgtggactctgg
767
786
SEQ ID NO: 5399
ccagatattgcactaggtc
2014
2033
1
4


 


SEQ ID NO: 5322
cctgggcacgctctttggc
862
881
SEQ ID NO: 5400
gccagctcacaagcccagg
1687
1706
1
4


 


SEQ ID NO: 5323
ctgggcacgctctttggcc
863
882
SEQ ID NO: 5401
ggccagctcacaagcccag
1686
1705
1
4


 


SEQ ID NO: 5324
ctggtcttctacgtcttgt
1028
1047
SEQ ID NO: 5402
acaaaagcaagacttccag
1663
1682
1
4


 


SEQ ID NO: 5325
agagtgcggtagtgcccct
1056
1075
SEQ ID NO: 5403
agggccaggattcctctct
2229
2248
1
4


 


SEQ ID NO: 5326
tgggcactggtatttggag
1217
1236
SEQ ID NO: 5404
ctcccactggaacagccca
1446
1465
1
4


 


SEQ ID NO: 5327
gaattaaatcacggatggc
1267
1286
SEQ ID NO: 5405
gccaaccaagagcacattc
2311
2330
1
4


 


SEQ ID NO: 5328
tgttgctagaagttgggtt
1598
1617
SEQ ID NO: 5406
aaccatcctgctcataaca
2967
2986
1
4


 


SEQ ID NO: 5329
aggagctctgaatctgata
1764
1783
SEQ ID NO: 5407
tatcacattacatcatcct
2063
2082
1
4


 


SEQ ID NO: 5330
taaatggctttaattatat
1855
1874
SEQ ID NO: 5408
atatatgtgcagtatttta
3003
3022
1
4


 


SEQ ID NO: 5331
aaaatgacaaggggagggc
2215
2234
SEQ ID NO: 5409
gccctccttgcctgttttt
2817
2836
1
4


 


SEQ ID NO: 5332
ttaaaggaaaagtcaacat
2330
2349
SEQ ID NO: 5410
atgtgcagtattttattaa
3007
3026
1
4


 


SEQ ID NO: 5333
acatcttctctcttttttt
2345
2364
SEQ ID NO: 5411
aaaagaaaaatatatatgt
2992
3011
1
4


 


SEQ ID NO: 5334
ttctacgtcctcttcccca
197
216
SEQ ID NO: 5412
tgggccagccgcacaagaa
1116
1135
1
3


 


SEQ ID NO: 5335
tgggtagctgtgattggag
257
276
SEQ ID NO: 5413
ctcccactggaacagccca
1446
1465
1
3


 


SEQ ID NO: 5336
gctgtgattggagactggc
263
282
SEQ ID NO: 5414
gccatgccatgggcacagc
423
442
1
3


 


SEQ ID NO: 5337
cacttccgtgcccctgata
358
377
SEQ ID NO: 5415
tatcacccaggctggagtg
2548
2567
1
3


 


SEQ ID NO: 5338
acatctactctttccatct
464
483
SEQ ID NO: 5416
agatgggatttcatcatgt
2705
2724
1
3


 


SEQ ID NO: 5339
ctactctttccatctttca
468
487
SEQ ID NO: 5417
tgaatactctcacaagtag
1419
1438
1
3


 


SEQ ID NO: 5340
agataaagccgacctacag
492
511
SEQ ID NO: 5418
ctgtttttcaatctcatct
2828
2847
1
3


 


SEQ ID NO: 5341
tgtgcagctgaatgtctgt
553
572
SEQ ID NO: 5419
acagaaactttcagccaca
644
663
1
3


 


SEQ ID NO: 5342
atgtctgtctgtcacgaat
564
583
SEQ ID NO: 5420
attcaggtatagctgacat
2038
2057
1
3


 


SEQ ID NO: 5343
ctgtcacgaatctaccttg
572
591
SEQ ID NO: 5421
caaggtgctaggattacag
2779
2798
1
3


 


SEQ ID NO: 5344
atcaagttgttgctggagt
606
625
SEQ ID NO: 5422
actcctgacctcaagtgat
2742
2761
1
3


 


SEQ ID NO: 5345
cagaaactttcagccacat
645
664
SEQ ID NO: 5423
atgtttcaattaggctctg
2185
2204
1
3


 


SEQ ID NO: 5346
actttcagccacatccaca
650
669
SEQ ID NO: 5424
tgtggcgtatcatgcaagt
1818
1837
1
3


 


SEQ ID NO: 5347
atgccagcctcaagaaata
678
697
SEQ ID NO: 5425
tattttttttactgtgcat
1950
1969
1
3


 


SEQ ID NO: 5348
agaaatattttctcattac
690
709
SEQ ID NO: 5426
gtaaatatgactcctttct
2283
2302
1
3


 


SEQ ID NO: 5349
gaaatattttctcattacc
691
710
SEQ ID NO: 5427
ggtaaatatgactcctttc
2282
2301
1
3


 


SEQ ID NO: 5350
tgctgctcaagggactggg
744
763
SEQ ID NO: 5428
cccaagccaaccaagagca
2306
2325
1
3


 


SEQ ID NO: 5351
cctgtggactctggagaaa
772
791
SEQ ID NO: 5429
tttcatcatgttggccagg
2713
2732
1
3


 


SEQ ID NO: 5352
ggagaaagcccagaggtgg
784
803
SEQ ID NO: 5430
ccaccgcaccgggccctcc
2805
2824
1
3


 


SEQ ID NO: 5353
ttgaaacccccatcccaag
1004
1023
SEQ ID NO: 5431
cttgaattcctgggctcaa
2405
2424
1
3


 


SEQ ID NO: 5354
cagatggaggtgccatatc
1351
1370
SEQ ID NO: 5432
gatatgcagagtatttctg
2847
2866
1
3


 


SEQ ID NO: 5355
ggagctcactcccactgga
1438
1457
SEQ ID NO: 5433
tccacctgccttggcctcc
2760
2779
1
3


 


SEQ ID NO: 5356
ttgggtaatgtttttgaaa
1553
1572
SEQ ID NO: 5434
tttctctatcccaagccaa
2297
2316
1
3


 


SEQ ID NO: 5357
gaagttgggttgttctgga
1606
1625
SE0 ID NO: 5435
tccaccccactggatcttc
2131
2150
1
3


 


SEQ ID NO: 5358
aaaagaaggctgcctaagg
1785
1804
SEQ ID NO: 5436
ccttgcctgcttttctttt
2503
2522
1
3


 


SEQ ID NO: 5359
aaagaaggctgcctaagga
1786
1805
SEQ ID NO: 5437
tccttgcctgcttttcttt
2502
2521
1
3


 


SEQ ID NO: 5360
aagaaggctgcctaaggag
1787
1806
SEQ ID NO: 5438
ctccttgcctgcttttctt
2501
2520
1
3


 


SEQ ID NO: 5361
agaaggctgcctaaggagg
1788
1807
SEQ ID NO: 5439
cctccttgcctgcttttct
2500
2519
1
3


 


SEQ ID NO: 5362
atttccttggatttctgaa
1982
2001
SEQ ID NO: 5440
ttcaattaggctctgaaat
2189
2208
1
3


 


SEQ ID NO: 5363
tccttataagcccagctct
2081
2100
SEQ ID NO: 5441
agagcacattcttaaagga
2319
2338
1
3


 


SEQ ID NO: 5364
ataagcccagctctgcttt
2086
2105
SEQ ID NO: 5442
aaagctgaagcctatttat
2889
2908
1
3


 


SEQ ID NO: 5365
ggccaggattcctctctca
2231
2250
SEQ ID NO: 5443
tgagccaccgcaccgggcc
2801
2820
1
3


 


SEQ ID NO: 5366
gccaactcctccttgcctg
2493
2512
SEQ ID NO: 5444
caggctggagtggagtggc
2555
2574
1
3


 


SEQ ID NO: 5367
ttttttttctttttttgag
2519
2538
SEQ ID NO: 5445
ctcataacatctttgaaaa
2977
2996
1
3


 


SEQ ID NO: 5368
ccggcgtgcaccaccatgc
2652
2671
SEQ ID NO: 5446
gcatgagccaccgcaccgg
2798
2817
1
3
















TABLE 11







Selected palindromic sequences from rat glucose-6-phosphatase


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B




















SEQ ID NO: 5447
ctgactattacagcaacag
301
320
SEQ ID NO: 5471
ctgtggctgaaactttcag
598
617
1
6


 


SEQ ID NO: 5448
ctcttggggttggggctgg
831
850
SEQ ID NO: 5472
ccagcatgtaccgcaagag
859
878
1
6


 


SEQ ID NO: 5449
tgcaaaggagaactgcgca
879
898
SEQ ID NO: 5473
tgcgaccgtcccctttgca
1019
1038
1
6


 


SEQ ID NO: 5450
cctcgggccatgccatggg
376
395
SEQ ID NO: 5474
cccagtgtggggccagagg
1171
1190
1
5


 


SEQ ID NO: 5451
ttgagcaaaccatatgcaa
1478
1497
SEQ ID NO: 5475
ttgcagagtgtgtcttcaa
2057
2076
1
5


 


SEQ ID NO: 5452
cagcttcctgaggtaccaa
2
21
SEQ ID NO: 5476
ttggtgtctgtgatcgctg
123
142
1
4


 


SEQ ID NO: 5453
ggtaccaaggaggaaggat
13
32
SEQ ID NO: 5477
atccagtcgactcgctacc
66
85
1
4


 


SEQ ID NO: 5454
ctccacgactttgggatcc
51
70
SEQ ID NO: 5478
ggatcgggaggagggggag
1448
1467
1
4


 


SEQ ID NO: 5455
caggactggtttgtcttgg
108
127
SEQ ID NO: 5479
ccaagcccgactgtgcctg
2018
2037
1
4


 


SEQ ID NO: 5456
cttctatgtcctctttccc
155
174
SEQ ID NO: 5480
gggacagacacacaagaag
1076
1095
1
4


 


SEQ ID NO: 5457
ttctatgtcctctttccca
156
175
SEQ ID NO: 5481
tgggacagacacacaagaa
1075
1094
1
4


 


SEQ ID NO: 5458
tggttccacattcaagaga
177
196
SEQ ID NO: 5482
tctcaataatgatagacca
1549
1568
1
4


 


SEQ ID NO: 5459
tgcctctgataaaacagtt
325
344
SEQ ID NO: 5483
aactctgagatcttgggca
1868
1887
1
4


 


SEQ ID NO: 5460
agcccggctcctgggacag
1064
1083
SEQ ID NO: 5484
ctgtcctccagcctgggct
2034
2053
1
4


 


SEQ ID NO: 5461
agtctctgacacaagtcag
1111
1130
SEQ ID NO: 5485
ctgaatggtaatggtgact
1659
1678
1
4


 


SEQ ID NO: 5462
aaaaaggtgaatttttaaa
1237
1256
SEQ ID NO: 5486
tttattaaaacgacatttt
2201
2220
1
4


 


SEQ ID NO: 5463
acactctcaataatgatag
1545
1564
SEQ ID NO: 5487
ctatgaatgatgcctgtgt
2121
2140
1
4


 


SEQ ID NO: 5464
aaagaatgaacgtgctcca
37
56
SEQ ID NO: 5488
tggacctcctgtggacttt
724
743
1
3


 


SEQ ID NO: 5465
ctttgggatccagtcgact
59
78
SEQ ID NO: 5489
agtcagcggccgtgcaaag
1124
1143
1
3


 


SEQ ID NO: 5466
gtgatcgctgacctcagga
132
151
SEQ ID NO: 5490
tcctctctccaaaggtcac
1911
1930
1
3


 


SEQ ID NO: 5467
ggaacgccttctatgtcct
148
167
SEQ ID NO: 5491
aggactcatcactgcttcc
1748
1767
1
3


 


SEQ ID NO: 5468
gactgtgggcatcaatctc
194
213
SEQ ID NO: 5492
gagactggaccagggagtc
357
376
1
3


 


SEQ ID NO: 5469
ggacactgactattacagc
296
315
SEQ ID NO: 5493
gctgaacgtctgtctgtcc
518
537
1
3


 


SEQ ID NO: 5470
aagcccccgtcccagattg
966
985
SEQ ID NO: 5494
caattgtttgctggtgctt
1833
1852
1
3
















TABLE 12







Selected palindromic sequences from human B-catenin


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B



















SEQ ID NO: 5495
agcagcttcagtccccgcc
70
89
SEQ ID NO: 5542
ggcgacatatgcagctgct
2152
2171
1
5


 


SEQ ID NO: 5496
ccattctggtgccactacc
304
323
SEQ ID NO: 5543
ggtatggaccccatgatgg
2387
2406
1
5


 


SEQ ID NO: 5497
tccttctctgagtggtaaa
328
347
SEQ ID NO: 5544
tttattacatcaagaagga
985
1004
1
5


 


SEQ ID NO: 5498
tctgagtggtaaaggcaat
334
353
SEQ ID NO: 5545
attgtacgtaccatgcaga
791
810
1
5


 


SEQ ID NO: 5499
cagagggtacgagctgcta
473
492
SEQ ID NO: 5546
tagctgcaggggtcctctg
2037
2056
1
5


 


SEQ ID NO: 5500
ctaaatgacgaggaccagg
677
696
SEQ ID NO: 5547
cctgtaaatcatcctttag
2539
2558
1
5


 


SEQ ID NO: 5501
taaatgacgaggaccaggt
678
697
SEQ ID NO: 5548
acctgtaaatcatccttta
2538
2557
1
5


 


SEQ ID NO: 5502
gtcctgtatgagtgggaac
383
402
SEQ ID NO: 5549
gttccgaatgtctgaggac
2176
2195
2
4


 


SEQ ID NO: 5503
cccagcgccgtacgtccat
1839
1858
SEQ ID NO: 5550
atgggctgccagatctggg
2451
2470
2
4


 


SEQ ID NO: 5504
tcccctgagggtatttgaa
143
162
SEQ ID NO: 5551
ttcacatcctagctcggga
1929
1948
1
4


 


SEQ ID NO: 5505
gggtatttgaagtatacca
151
170
SEQ ID NO: 5552
tggttaagctcttacaccc
1680
1699
1
4


 


SEQ ID NO: 5506
gctgttagtcactggcagc
260
279
SEQ ID NO: 5553
gctgcctccaggtgacagc
2494
2513
1
4


 


SEQ ID NO: 5507
gtcctgtatgagtgggaac
383
402
SEQ ID NO: 5554
gttcgccttcactatggac
1652
1671
1
4


 


SEQ ID NO: 5508
tcctgtatgagtgggaaca
384
403
SEQ ID NO: 5555
tgttccgaatgtctgagga
2175
2194
1
4


 


SEQ ID NO: 5509
gtatgcaatgactcgagct
454
473
SEQ ID NO: 5556
agctggcctggtttgatac
2517
2536
1
4


 


SEQ ID NO: 5510
gtccagcgtttggctgaac
563
582
SEQ ID NO: 5557
gttcgccttcactatggac
1652
1671
1
4


 


SEQ ID NO: 5511
tatcaagatgatgcagaac
623
642
SEQ ID NO: 5558
gttcgtgcacatcaggata
1820
1839
1
4


 


SEQ ID NO: 5512
tatggtccatcagctttct
718
737
SEQ ID NO: 5559
agaaagcaagctcatcata
1126
1145
1
4


 


SEQ ID NO: 5513
ccctggtgaaaatgcttgg
915
934
SEQ ID NO: 5560
ccaaagagtagctgcaggg
2029
2048
1
4


 


SEQ ID NO: 5514
agctttaggacttcacctg
1291
1310
SEQ ID NO: 5561
caggtgacagcaatcagct
2502
2521
1
4


 


SEQ ID NO: 5515
ggaatctttcagatgctgc
1356
1375
SEQ ID NO: 5562
gcagctgctgttttgttcc
2162
2181
1
4


 


SEQ ID NO: 5516
tgtccttcgggctggtgac
1549
1568
SEQ ID NO: 5563
gtcatctgaccagccgaca
1605
1624
1
4


 


SEQ ID NO: 5517
cacagctcctctgacagag
2107
2126
SEQ ID NO: 5564
ctctaggaatgaaggtgtg
2134
2153
1
4


 


SEQ ID NO: 5518
ccagacagaaaagcggctg
245
264
SEQ ID NO: 5565
cagctcgttgtaccgctgg
828
847
2
3


 


SEQ ID NO: 5519
cagcagcgttggcccggcc
4
23
SEQ ID NO: 5566
ggccaccaccctggtgctg
2420
2439
1
3


 


SEQ ID NO: 5520
aggtctgaggagcagcttc
60
79
SEQ ID NO: 5567
gaagaggatgtggatacct
359
378
1
3


 


SEQ ID NO: 5521
actgttttgaaaatccagc
174
193
SEQ ID NO: 5568
gctgatattgatggacagt
437
456
1
3


 


SEQ ID NO: 5522
ctgatttgatggagttgga
213
232
SEQ ID NO: 5569
tccaggtgacagcaatcag
2500
2519
1
3


 


SEQ ID NO: 5523
ccagacagaaaagcggctg
245
264
SEQ ID NO: 5570
cagcaacagtcttacctgg
275
294
1
3


 


SEQ ID NO: 5524
acagctccttctctgagtg
323
342
SEQ ID NO: 5571
cactgagcctgccatctgt
1579
1598
1
3


 


SEQ ID NO: 5525
tggatacctcccaagtcct
369
388
SEQ ID NO: 5572
aggactaaataccattcca
1972
1991
1
3


 


SEQ ID NO: 5526
tcaagaacaagtagctgat
424
443
SEQ ID NO: 5573
atcagctggcctggtttga
2514
2533
1
3


 


SEQ ID NO: 5527
agctcagagggtacgagct
469
488
SEQ ID NO: 5574
agctggtggaatgcaagct
1276
1295
1
3


 


SEQ ID NO: 5528
gcatgcagatcccatctac
516
535
SEQ ID NO: 5575
gtagaagctggtggaatgc
1271
1290
1
3


 


SEQ ID NO: 5529
ccacacgtgcaatccctga
645
664
SEQ ID NO: 5576
tcagatgatataaatgtgg
1430
1449
1
3


 


SEQ ID NO: 5530
cacacgtgcaatccctgaa
646
665
SEQ ID NO: 5577
ttcagatgatataaatgtg
1429
1448
1
3


 


SEQ ID NO: 5531
ggaccttgcataacctttc
846
865
SEQ ID NO: 5578
gaaatcttgccctttgtcc
1743
1762
1
3


 


SEQ ID NO: 5532
ctccacaaccttttattac
974
993
SEQ ID NO: 5579
gtaaatcatcctttaggag
2542
2561
1
3


 


SEQ ID NO: 5533
cagagtgctgaaggtgcta
1222
1241
SEQ ID NO: 5580
tagctgcaggggtcctctg
2037
2056
1
3


 


SEQ ID NO: 5534
ggactctcaggaatctttc
1347
1366
SEQ ID NO: 5581
gaaatcttgccctttgtcc
1743
1762
1
3


 


SEQ ID NO: 5535
tgatataaatgtggtcacc
1435
1454
SEQ ID NO: 5582
ggtgacagggaagacatca
1562
1581
1
3


 


SEQ ID NO: 5536
cccagcgccgtacgtccat
1839
1858
SEQ ID NO: 5583
atggccaggatgccttggg
2370
2389
1
3


 


SEQ ID NO: 5537
gtccatgggtgggacacag
1852
1871
SEQ ID NO: 5584
ctgtgaacttgctcaggac
2053
2072
1
3


 


SEQ ID NO: 5538
ttgtaccggagcccttcac
1915
1934
SEQ ID NO: 5585
gtgaacttgctcaggacaa
2055
2074
1
3


 


SEQ ID NO: 5539
ttgttatcagaggactaaa
1962
1981
SEQ ID NO: 5586
tttaggagtaacaatacaa
2553
2572
1
3


 


SEQ ID NO: 5540
gaagctattgaagctgagg
2084
2103
SEQ ID NO: 5587
cctctgacagagttacttc
2114
2133
1
3


 


SEQ ID NO: 5541
tcagaacagagccaatggc
2247
2266
SEQ ID NO: 5588
gccaccaccctggtgctga
2421
2440
1
3
















TABLE 13







Selected palindromic sequences from human hepatitis C virus (HCV)


















Start
End


Start
End





Source
Index
Index

Match
Index
Index
#
B



















SEQ ID NO: 5589
cagcacctgggtgctggta
5314
5333
SEQ ID NO: 6135
taccatcacccagctgctg
6196
6215
1
9


 


SEQ ID NO: 5590
aactcgtccggatgcccgg
1682
1701
SEQ ID NO: 6136
ccgggcagcgggtcgagtt
8202
8221
1
8


 


SEQ ID NO: 5591
cgctgctgggtagcgctca
1049
1068
SEQ ID NO: 6137
tgagagcgacgccgcagcg
6151
6170
1
7


 


SEQ ID NO: 5592
ctccggatcccacaagccg
1352
1371
SEQ ID NO: 6138
cggcatgtgggcccgggag
6053
6072
1
7


 


SEQ ID NO: 5593
tgtaacatcgggggggtcg
2048
2067
SEQ ID NO: 6139
cgacccctcccacattaca
6871
6890
1
7


 


SEQ ID NO: 5594
gtaacatcgggggggtcgg
2049
2068
SEQ ID NO: 6140
ccgacccctcccacattac
6870
6889
1
7


 


SEQ ID NO: 5595
cagccaccaagcaggcgga
5556
5575
SEQ ID NO: 6141
tccggctggttcgttgctg
9254
9273
1
7


 


SEQ ID NO: 5596
ctcaccacccagaacaccc
5744
5763
SEQ ID NO: 6142
gggtgtgcacggtgttgag
6291
6310
1
7


 


SEQ ID NO: 5597
ccagccttaccatcaccca
6189
6208
SEQ ID NO: 6143
tgggcgctggtatcgctgg
5832
5851
1
7


 


SEQ ID NO: 5598
ctacgccgtgttccggctc
6249
6268
SEQ ID NO: 6144
gagcccgaaccggacgtag
6830
6849
1
7


 


SEQ ID NO: 5599
tacgccgtgttccggctcg
6250
6269
SEQ ID NO: 6145
cgagcccgaaccggacgta
6829
6848
1
7


 


SEQ ID NO: 5600
gagttcctggtaaaagcct
8216
8235
SEQ ID NO: 6146
aggctatgactaggtactc
8634
8653
1
7


 


SEQ ID NO: 5601
atggcggggaactgggcta
1430
1449
SEQ ID NO: 6147
tagcgcattttcactccat
9019
9038
2
6


 


SEQ ID NO: 5602
aaccaaacgtaacaccaac
370
389
SEQ ID NO: 6148
gttgccgctaccttaggtt
4115
4134
1
6


 


SEQ ID NO: 5603
ggtggtcagatcgttggtg
419
438
SEQ ID NO: 6149
caccagcccgctcaccacc
5734
5753
1
6


 


SEQ ID NO: 5604
ccttggcccctctatggca
584
603
SEQ ID NO: 6150
tgccaacgtgggtacaagg
6374
6393
1
6


 


SEQ ID NO: 5605
taccccggccacgcgtcag
1265
1284
SEQ ID NO: 6151
ctgacgactagctgcggta
8465
8484
1
6


 


SEQ ID NO: 5606
gggcacgctgcccgcctca
1508
1527
SEQ ID NO: 6152
tgagacgacgaccgtgccc
4759
4778
1
6


 


SEQ ID NO: 5607
ctgcaatgactccctccag
1624
1643
SEQ ID NO: 6153
ctggtggccctcaatgcag
2594
2613
1
6


 


SEQ ID NO: 5608
aaccgatcgtctcggcaac
1897
1916
SEQ ID NO: 6154
gttgccgctaccttaggtt
4115
4134
1
6


 


SEQ ID NO: 5609
gtgcggggcccccccgtgt
2032
2051
SEQ ID NO: 6155
acaccacgggcccctgcac
6537
6556
1
6


 


SEQ ID NO: 5610
atgtggggggcgtggagca
2238
2257
SEQ ID NO: 6156
tgctcaatgtcctacacat
7610
7629
1
6


 


SEQ ID NO: 5611
ggagagcgttgcaacttgg
2288
2307
SEQ ID NO: 6157
ccaagctcaaactcactcc
9207
9226
1
6


 


SEQ ID NO: 5612
cgtccgttgccggagcgca
2613
2632
SEQ ID NO: 6158
tgcgagcccgaaccggacg
6827
6846
1
6


 


SEQ ID NO: 5613
gtctggcattattgacctt
2817
2836
SEQ ID NO: 6159
aaggtcacctttgacagac
7763
7782
1
6


 


SEQ ID NO: 5614
tctttgatatcaccaaact
2997
3016
SEQ ID NO: 6160
agttcgatgaaatggaaga
5454
5473
1
6


 


SEQ ID NO: 5615
cttctgattgccatactcg
3014
3033
SEQ ID NO: 6161
cgagcaattcaagcagaag
5518
5537
1
6


 


SEQ ID NO: 5616
gcggcgtgtggggacatca
3314
3333
SEQ ID NO: 6162
tgatcacgccatgcgccgc
7641
7660
1
6


 


SEQ ID NO: 5617
gggacatcatcctgggcct
3324
3343
SEQ ID NO: 6163
aggcggtggattttgtccc
3915
3934
1
6


 


SEQ ID NO: 5618
gggcgtcttccgggccgct
3874
3893
SEQ ID NO: 6164
agcggcacggcgaccgccc
7439
7458
1
6


 


SEQ ID NO: 5619
ggcgtcttccgggccgctg
3875
3894
SEQ ID NO: 6165
cagcggcacggcgaccgcc
7438
7457
1
6


 


SEQ ID NO: 5620
gcgtcttccgggccgctgt
3876
3895
SEQ ID NO: 6166
acaggtgccctgatcacgc
7631
7650
1
6


 


SEQ ID NO: 5621
gtccccggtcttcacagac
3961
3980
SEQ ID NO: 6167
gtcttggaagaacccggac
7252
7271
1
6


 


SEQ ID NO: 5622
catcaggactggggtaagg
4174
4193
SEQ ID NO: 6168
ccttcctcaagccgtgatg
8155
8174
1
6


 


SEQ ID NO: 5623
ccgacggtggttgctccgg
4245
4264
SEQ ID NO: 6169
ccgggggaacggccctcgg
4853
4872
1
6


 


SEQ ID NO: 5624
ggggggaaggcacctcatt
4501
4520
SEQ ID NO: 6170
aatgttgtgacttggcccc
8334
8353
1
6


 


SEQ ID NO: 5625
ccgagcaattcaagcagaa
5517
5536
SEQ ID NO: 6171
ttctgattgccatactcgg
3015
3034
1
6


 


SEQ ID NO: 5626
agatgaaggcaaaggcgtc
7821
7840
SEQ ID NO: 6172
gacgaccttgtcgttatct
8564
8583
1
6


 


SEQ ID NO: 5627
cccctagggggcgctgcca
767
786
SEQ ID NO: 6173
tggccggcgccccccgggg
3674
3693
3
5


 


SEQ ID NO: 5628
ctcccggcctagttggggc
646
665
SEQ ID NO: 6174
gcccccccttgagggggag
7519
7538
2
5


 


SEQ ID NO: 5629
ttccgctcgtcggcggccc
750
769
SEQ ID NO: 6175
gggcaaaggacgtccggaa
7923
7942
2
5


 


SEQ ID NO: 5630
cccctagggggcgctgcca
767
786
SEQ ID NO: 6176
tggcgggggcccactgggg
1383
1402
2
5


 


SEQ ID NO: 5631
gccccgccggcatgcgaca
1222
1241
SEQ ID NO: 6177
tgtcccagggggggagggc
9147
9166
2
5


 


SEQ ID NO: 5632
aggacgaccgggtcctttc
178
197
SEQ ID NO: 6178
gaaaaaggacggttgtcct
7341
7360
1
5


 


SEQ ID NO: 5633
ggacgaccgggtcctttct
179
198
SEQ ID NO: 6179
agaaaaaggacggttgtcc
7340
7359
1
5


 


SEQ ID NO: 5634
aaaaccaaacgtaacacca
368
387
SEQ ID NO: 6180
tggtttttttttttttttt
9443
9462
1
5


 


SEQ ID NO: 5635
caaccgccgcccacaggac
385
404
SEQ ID NO: 6181
gtcctgaacccgtctgttg
4100
4119
1
5


 


SEQ ID NO: 5636
cggtggtcagatcgttggt
418
437
SEQ ID NO: 6182
accattgagacgacgaccg
4754
4773
1
5


 


SEQ ID NO: 5637
acctgttgccgcgcagggg
444
463
SEQ ID NO: 6183
ccccggccacgcgtcaggt
1267
1286
1
5


 


SEQ ID NO: 5638
tgccgcgcaggggccccag
450
469
SEQ ID NO: 6184
ctgggcgcgctgacgggca
3164
3183
1
5


 


SEQ ID NO: 5639
gggccccaggttgggtgtg
460
479
SEQ ID NO: 6185
cacagcctgtctcgtgccc
9296
9315
1
5


 


SEQ ID NO: 5640
gttggggccccacggaccc
657
676
SEQ ID NO: 6186
gggtgggtagccgcccaac
5783
5802
1
5


 


SEQ ID NO: 5641
ttggggccccacggacccc
658
677
SEQ ID NO: 6187
ggggtgggtagccgcccaa
5782
5801
1
5


 


SEQ ID NO: 5642
tggggccccacggaccccc
659
678
SEQ ID NO: 6188
gggggtgggtagccgccca
5781
5800
1
5


 


SEQ ID NO: 5643
cctcacatgcggcctcgcc
715
734
SEQ ID NO: 6189
ggcggggcgacaatagagg
3774
3793
1
5


 


SEQ ID NO: 5644
cacatgcggcctcgccgac
718
737
SEQ ID NO: 6190
gtcgtcggagtcgtgtgtg
6020
6039
1
5


 


SEQ ID NO: 5645
tccgctcgtcggcggcccc
751
770
SEQ ID NO: 6191
ggggcaaaggacgtccgga
7922
7941
1
5


 


SEQ ID NO: 5646
ggcgctgccagggccttgg
776
795
SEQ ID NO: 6192
ccaagccacagtgtgcgcc
5110
5129
1
5


 


SEQ ID NO: 5647
ccatgtcacgaacgactgc
943
962
SEQ ID NO: 6193
gcagcaacacgtggcatgg
6498
6517
1
5


 


SEQ ID NO: 5648
gtgccctgcgttcgggagg
1019
1038
SEQ ID NO: 6194
cctcacaacgggggggcac
1495
1514
1
5


 


SEQ ID NO: 5649
tgccctgcgttcgggaggg
1020
1039
SEQ ID NO: 6195
ccctcacaacgggggggca
1494
1513
1
5


 


SEQ ID NO: 5650
gccctgcgttcgggagggt
1021
1040
SEQ ID NO: 6196
accctcacaacgggggggc
1493
1512
1
5


 


SEQ ID NO: 5651
aggaatgctaccatcccca
1085
1104
SEQ ID NO: 6197
tgggcatcggcacagtcct
4323
4342
1
5


 


SEQ ID NO: 5652
tccccactacgacaatacg
1098
1117
SEQ ID NO: 6198
cgtattcccagatttggga
8092
8111
1
5


 


SEQ ID NO: 5653
atacgacaccacgtcgatt
1112
1131
SEQ ID NO: 6199
aatcaatgctgtagcgtat
4576
4595
1
5


 


SEQ ID NO: 5654
atttgctcgttggggcggc
1128
1147
SEQ ID NO: 6200
gccgccacttgcggcaaat
9164
9183
1
5


 


SEQ ID NO: 5655
ccttctcgccccgccggca
1215
1234
SEQ ID NO: 6201
tgccaacgtgggtacaagg
6374
6393
1
5


 


SEQ ID NO: 5656
accccggccacgcgtcagg
1266
1285
SEQ ID NO: 6202
cctgccgcggttaccgggt
6340
6359
1
5


 


SEQ ID NO: 5657
gccctcgtagtgtcgcagt
1331
1350
SEQ ID NO: 6203
actgcgtcggcatgtgggc
6046
6065
1
5


 


SEQ ID NO: 5658
gccgtctcagagaatccag
1558
1577
SEQ ID NO: 6204
ctggtatcgctggtgcggc
5838
5857
1
5


 


SEQ ID NO: 5659
ctgaactgcaatgactccc
1619
1638
SEQ ID NO: 6205
gggacagatcggagctcag
2313
2332
1
5


 


SEQ ID NO: 5660
agactgggtttcttgccgc
1641
1660
SEQ ID NO: 6206
gcggcgagcctacgagtct
8609
8628
1
5


 


SEQ ID NO: 5661
tcgtccggatgcccggagc
1685
1704
SEQ ID NO: 6207
gctccgggggcgcttacga
4257
4276
1
5


 


SEQ ID NO: 5662
ccagggatggggtcctatc
1738
1757
SEQ ID NO: 6208
gataacttcccctacctgg
5084
5103
1
5


 


SEQ ID NO: 5663
gacaaccgatcgtctcggc
1894
1913
SEQ ID NO: 6209
gccgcggttaccgggtgtc
6343
6362
1
5


 


SEQ ID NO: 5664
caagacgtgcggggccccc
2026
2045
SEQ ID NO: 6210
ggggtctcccccctccttg
6919
6938
1
5


 


SEQ ID NO: 5665
acgtgcggggcccccccgt
2030
2049
SEQ ID NO: 6211
acgggcgcccccattacgt
4202
4221
1
5


 


SEQ ID NO: 5666
ccggaagcaccccgaggcc
2101
2120
SEQ ID NO: 6212
ggccgctgtatgcacccgg
3886
3905
1
5


 


SEQ ID NO: 5667
aggccacgtactcaaaatg
2115
2134
SEQ ID NO: 6213
cattatgtccaaatggcct
3137
3156
1
5


 


SEQ ID NO: 5668
tgtatgtggggggcgtgga
2235
2254
SEQ ID NO: 6214
tccaagtggcccatctaca
4011
4030
1
5


 


SEQ ID NO: 5669
gagtggcaggttctgccct
2354
2373
SEQ ID NO: 6215
agggcaggggtggcgactc
3400
3419
1
5


 


SEQ ID NO: 5670
tcctttgcaatcaaatggg
2474
2493
SEQ ID NO: 6216
cccaccttatgggcaagga
8861
8880
1
5


 


SEQ ID NO: 5671
agcccaggccgaggccgcc
2566
2585
SEQ ID NO: 6217
ggcgtccacagtcaaggct
7834
7853
1
5


 


SEQ ID NO: 5672
ggcggcatatgctttctat
2698
2717
SEQ ID NO: 6218
atagaagaagcctgccgcc
7865
7884
1
5


 


SEQ ID NO: 5673
gcggcatatgctttctatg
2699
2718
SEQ ID NO: 6219
catagaagaagcctgccgc
7864
7883
1
5


 


SEQ ID NO: 5674
cggcatatgctttctatgg
2700
2719
SEQ ID NO: 6220
ccatagaagaagcctgccg
7863
7882
1
5


 


SEQ ID NO: 5675
tgcatgtgtgggttccccc
2913
2932
SEQ ID NO: 6221
ggggggacggcatcatgca
6402
6421
1
5


 


SEQ ID NO: 5676
cccccctcaacgtccgggg
2928
2947
SEQ ID NO: 6222
ccccaatcgatgaacgggg
9376
9395
1
5


 


SEQ ID NO: 5677
gggcaggggtggcgactcc
3401
3420
SEQ ID NO: 6223
ggaggccgcaagccagccc
8066
8085
1
5


 


SEQ ID NO: 5678
atgttggactgtctaccat
3574
3593
SEQ ID NO: 6224
atggtaccgaccctaacat
4158
4177
1
5


 


SEQ ID NO: 5679
tgttggactgtctaccatg
3575
3594
SEQ ID NO: 6225
catggtaccgaccctaaca
4157
4176
1
5


 


SEQ ID NO: 5680
cgttccctgacaccatgca
3695
3714
SEQ ID NO: 6226
tgcacgatgctcgtgaacg
8543
8562
1
5


 


SEQ ID NO: 5681
acaccatgcacctgtggca
3704
3723
SEQ ID NO: 6227
tgccgcggttaccgggtgt
6342
6361
1
5


 


SEQ ID NO: 5682
caccatgcacctgtggcag
3705
3724
SEQ ID NO: 6228
ctgccgcggttaccgggtg
6341
6360
1
5


 


SEQ ID NO: 5683
ggcatcggcacagtcctgg
4325
4344
SEQ ID NO: 6229
ccaggattgcccgtttgcc
4979
4998
1
5


 


SEQ ID NO: 5684
aagcggagacggctggagc
4347
4366
SEQ ID NO: 6230
gctccccccagcgctgctt
5804
5823
1
5


 


SEQ ID NO: 5685
ggagcgcggcttgtcgtgc
4361
4380
SEQ ID NO: 6231
gcacggcgaccgcccctcc
7443
7462
1
5


 


SEQ ID NO: 5686
cgaagccatcaagggggga
4489
4508
SEQ ID NO: 6232
tccccccagcgctgcttcg
5806
5825
1
5


 


SEQ ID NO: 5687
tggaagtgtctcatacggc
5165
5184
SEQ ID NO: 6233
gccggattacaatcctcca
7225
7244
1
5


 


SEQ ID NO: 5688
gggtgctggtaggcggagt
5322
5341
SEQ ID NO: 6234
actcgcgatcccaccaccc
8765
8784
1
5


 


SEQ ID NO: 5689
gtgggtaggatcatcttgt
5390
5409
SEQ ID NO: 6235
acaacatggtctacgccac
7713
7732
1
5


 


SEQ ID NO: 5690
cgccgagcaattcaagcag
5515
5534
SEQ ID NO: 6236
ctgcacgccttccccggcg
6550
6569
1
5


 


SEQ ID NO: 5691
tggagtccaagtggcgagc
5592
5611
SEQ ID NO: 6237
gctcctcatacggattcca
8175
8194
1
5


 


SEQ ID NO: 5692
tggcgagctttggagacct
5603
5622
SEQ ID NO: 6238
aggtgccctgatcacgcca
7633
7652
1
5


 


SEQ ID NO: 5693
gcccgctcaccacccagaa
5739
5758
SEQ ID NO: 6239
ttctggcgggctatggggc
5895
5914
1
5


 


SEQ ID NO: 5694
tgagtgacttcaagacctg
6306
6325
SEQ ID NO: 6240
caggctataaaatcgctca
8363
8382
1
5


 


SEQ ID NO: 5695
atgtcaaaaacggttccat
6456
6475
SEQ ID NO: 6241
atggtaccgaccctaacat
4158
4177
1
5


 


SEQ ID NO: 5696
ccgaaaacctgcagcaaca
6488
6507
SEQ ID NO: 6242
tgttcctccaatgtgtcgg
8708
8727
1
5


 


SEQ ID NO: 5697
ggcgccaaactattccaag
6565
6584
SEQ ID NO: 6243
cttgaaagcctctgccgcc
8500
8519
1
5


 


SEQ ID NO: 5698
gccctccttgagggcgaca
6967
6986
SEQ ID NO: 6244
tgtctcctacttgaagggc
3814
3833
1
5


 


SEQ ID NO: 5699
cacccgcgtggagtcggag
7078
7097
SEQ ID NO: 6245
ctccggtggtacacgggtg
7278
7297
1
5


 


SEQ ID NO: 5700
ggagggggatgagaatgaa
7138
7157
SEQ ID NO: 6246
ttcatgctgtgcctactcc
9326
9345
1
5


 


SEQ ID NO: 5701
gcggcgatacccatatggg
7202
7221
SEQ ID NO: 6247
cccagggggggagggccgc
9150
9169
1
5


 


SEQ ID NO: 5702
ttgccacctgtcaaggccc
7301
7320
SEQ ID NO: 6248
gggccgccacttgcggcaa
9162
9181
1
5


 


SEQ ID NO: 5703
cccccccttgagggggagc
7520
7539
SEQ ID NO: 6249
gctcccggcctagttgggg
645
664
1
5


 


SEQ ID NO: 5704
ctgctgctcaatgtcctac
7606
7625
SEQ ID NO: 6250
gtaggactggcaggggcag
4809
4828
1
5


 


SEQ ID NO: 5705
catggacaggtgccctgat
7626
7645
SEQ ID NO: 6251
atcattgaacgactccatg
8996
9015
1
5


 


SEQ ID NO: 5706
atggacaggtgccctgatc
7627
7646
SEQ ID NO: 6252
gatcattgaacgactccat
8995
9014
1
5


 


SEQ ID NO: 5707
ggctatgactaggtactcc
8635
8654
SEQ ID NO: 6253
ggagcaacttgaaaaagcc
8920
8939
1
5


 


SEQ ID NO: 5708
caccatagatcactcccct
27
46
SEQ ID NO: 6254
agggccttggcacatggtg
785
804
2
4


 


SEQ ID NO: 5709
agctgttcaccttctcgcc
1206
1225
SEQ ID NO: 6255
ggcgtgctgacgactagct
8459
8478
2
4


 


SEQ ID NO: 5710
ctgcaatgactccctccag
1624
1643
SEQ ID NO: 6256
ctggtgcggctgttggcag
5847
5866
2
4


 


SEQ ID NO: 5711
atgtggggggcgtggagca
2238
2257
SEQ ID NO: 6257
tgctgcgccatcacaacat
7701
7720
2
4


 


SEQ ID NO: 5712
tggggacatcatcctgggc
3322
3341
SEQ ID NO: 6258
gcccaactcgctcccccca
5795
5814
2
4


 


SEQ ID NO: 5713
gggacatcatcctgggcct
3324
3343
SEQ ID NO: 6259
aggcaggagataacttccc
5076
5095
2
4


 


SEQ ID NO: 5714
gggagatactcctggggcc
3366
3385
SEQ ID NO: 6260
ggcccctgcacgccttccc
6545
6564
2
4


 


SEQ ID NO: 5715
atgttggactgtctaccat
3574
3593
SEQ ID NO: 6261
atggtctacgccacgacat
7718
7737
2
4


 


SEQ ID NO: 5716
ccagccttaccatcaccca
6189
6208
SEQ ID NO: 6262
tgggtacaagggagtctgg
6382
6401
2
4


 


SEQ ID NO: 5717
gccctccttgagggcgaca
6967
6986
SEQ ID NO: 6263
tgtcccagggggggagggc
9147
9166
2
4


 


SEQ ID NO: 5718
ccagcccccgattgggggc
1
20
SEQ ID NO: 6264
gcccgagggcagggcctgg
550
569
1
4


 


SEQ ID NO: 5719
accatagatcactcccctg
28
47
SEQ ID NO: 6265
cagggccttggcacatggt
784
803
1
4


 


SEQ ID NO: 5720
atgagtgtcgtgcagcctc
95
114
SEQ ID NO: 6266
gaggccgcgatgccatcat
2946
2965
1
4


 


SEQ ID NO: 5721
gtgcagcctccaggacccc
104
123
SEQ ID NO: 6267
gggggacggcatcatgcac
6403
6422
1
4


 


SEQ ID NO: 5722
tgcagcctccaggaccccc
105
124
SEQ ID NO: 6268
ggggggacggcatcatgca
6402
6421
1
4


 


SEQ ID NO: 5723
ccaggaccccccctcccgg
113
132
SEQ ID NO: 6269
ccggctggttcgttgctgg
9255
9274
1
4


 


SEQ ID NO: 5724
accccccctcccgggagag
118
137
SEQ ID NO: 6270
ctctcatgccaacgtgggt
6368
6387
1
4


 


SEQ ID NO: 5725
ccccctcccgggagagcca
121
140
SEQ ID NO: 6271
tggcaatgagggcatgggg
598
617
1
4


 


SEQ ID NO: 5726
agactgctagccgagtagt
243
262
SEQ ID NO: 6272
actatgcggtccccggtct
3953
3972
1
4


 


SEQ ID NO: 5727
agccgagtagtgttgggtc
251
270
SEQ ID NO: 6273
gaccaggatctcgtcggct
3656
3675
1
4


 


SEQ ID NO: 5728
ggtgcttgcgagtgccccg
299
318
SEQ ID NO: 6274
cggggccttggttgacacc
2139
2158
1
4


 


SEQ ID NO: 5729
gcgagtgccccgggaggtc
306
325
SEQ ID NO: 6275
gacccccggcgtaggtcgc
671
690
1
4


 


SEQ ID NO: 5730
accgtgcaccatgagcacg
331
350
SEQ ID NO: 6276
cgtgcaatacctgtacggt
2437
2456
1
4


 


SEQ ID NO: 5731
cccgggcggtggtcagatc
412
431
SEQ ID NO: 6277
gatcatgcatactcccggg
997
1016
1
4


 


SEQ ID NO: 5732
gccgcgcaggggccccagg
451
470
SEQ ID NO: 6278
cctgcacgccttccccggc
6549
6568
1
4


 


SEQ ID NO: 5733
accccgtggaaggcgacag
511
530
SEQ ID NO: 6279
ctgtatgcacccggggggt
3891
3910
1
4


 


SEQ ID NO: 5734
ccccgtggaaggcgacagc
512
531
SEQ ID NO: 6280
gctgtatgcacccgggggg
3890
3909
1
4


 


SEQ ID NO: 5735
agcctatccccaaggctcg
528
547
SEQ ID NO: 6281
cgagggcagggcctgggct
553
572
1
4


 


SEQ ID NO: 5736
ctatccccaaggctcgccg
531
550
SEQ ID NO: 6282
cggctgtcgttcccgatag
5418
5437
1
4


 


SEQ ID NO: 5737
tatccccaaggctcgccgg
532
551
SEQ ID NO: 6283
ccggctgtcgttcccgata
5417
5436
1
4


 


SEQ ID NO: 5738
cgggtatccttggcccctc
577
596
SEQ ID NO: 6284
gaggccgcaagccagcccg
8067
8086
1
4


 


SEQ ID NO: 5739
gcatggggtgggcaggatg
609
628
SEQ ID NO: 6285
catcgataccctcacatgc
706
725
1
4


 


SEQ ID NO: 5740
tcctgtcaccccgcggctc
630
649
SEQ ID NO: 6286
gagctgcaaagctccagga
8523
8542
1
4


 


SEQ ID NO: 5741
gggccccacggacccccgg
661
680
SEQ ID NO: 6287
ccggccgcatatgcggccc
4064
4083
1
4


 


SEQ ID NO: 5742
ggccccacggacccccggc
662
681
SEQ ID NO: 6288
gccggccgcatatgcggcc
4063
4082
1
4


 


SEQ ID NO: 5743
cggcctcgccgacctcatg
724
743
SEQ ID NO: 6289
catgaggatcatcgggccg
6472
6491
1
4


 


SEQ ID NO: 5744
ggcctcgccgacctcatgg
725
744
SEQ ID NO: 6290
ccatgaggatcatcgggcc
6471
6490
1
4


 


SEQ ID NO: 5745
ggccccctagggggcgctg
764
783
SEQ ID NO: 6291
cagctccgaattgtcggcc
7414
7433
1
4


 


SEQ ID NO: 5746
tggcacatggtgtccgggt
792
811
SEQ ID NO: 6292
acccacgctgcacgggcca
5188
5207
1
4


 


SEQ ID NO: 5747
cttcctcttggctctgctg
868
887
SEQ ID NO: 6293
cagcataggtcttgggaag
5863
5882
1
4


 


SEQ ID NO: 5748
catgtcacgaacgactgct
944
963
SEQ ID NO: 6294
agcagtgctcacttccatg
6847
6866
1
4


 


SEQ ID NO: 5749
gaggcggcggacttgatca
983
1002
SEQ ID NO: 6295
tgatggcattcacagcctc
5712
5731
1
4


 


SEQ ID NO: 5750
catccccactacgacaata
1096
1115
SEQ ID NO: 6296
tattaccggggtcttgatg
4592
4611
1
4


 


SEQ ID NO: 5751
gctgttcaccttctcgccc
1207
1226
SEQ ID NO: 6297
gggctgcgtgggaaacagc
8793
8812
1
4


 


SEQ ID NO: 5752
gccccgccggcatgcgaca
1222
1241
SEQ ID NO: 6298
tgtctcctacttgaagggc
3814
3833
1
4


 


SEQ ID NO: 5753
tggcctgggacatgatgat
1293
1312
SEQ ID NO: 6299
atcaatttgctccctgcca
5981
6000
1
4


 


SEQ ID NO: 5754
cacaagccgtcatcgacat
1362
1381
SEQ ID NO: 6300
atgtttgggactgggtgtg
6279
6298
1
4


 


SEQ ID NO: 5755
agccgtcatcgacatggtg
1366
1385
SEQ ID NO: 6301
caccaagcaggcggaggct
5560
5579
1
4


 


SEQ ID NO: 5756
ggtggcgggggcccactgg
1381
1400
SEQ ID NO: 6302
ccagggctcaggccccacc
5127
5146
1
4


 


SEQ ID NO: 5757
gggggcccactggggagtc
1387
1406
SEQ ID NO: 6303
gactaggtactccgccccc
8641
8660
1
4


 


SEQ ID NO: 5758
atggcggggaactgggcta
1430
1449
SEQ ID NO: 6304
tagcagtgctcacttccat
6846
6865
1
4


 


SEQ ID NO: 5759
ttgattgtgatgctacttt
1454
1473
SEQ ID NO: 6305
aaagcaagctgcccatcaa
7665
7684
1
4


 


SEQ ID NO: 5760
caacgggggggcacgctgc
1500
1519
SEQ ID NO: 6306
gcagaaggcgctcgggttg
5530
5549
1
4


 


SEQ ID NO: 5761
acgctgcccgcctcaccag
1512
1531
SEQ ID NO: 6307
ctggacccgaggagagcgt
2278
2297
1
4


 


SEQ ID NO: 5762
tcagagaatccagcttata
1564
1583
SEQ ID NO: 6308
tatatcgggggtcccctga
8393
8412
1
4


 


SEQ ID NO: 5763
accaatggcagttggcaca
1586
1605
SEQ ID NO: 6309
tgtggctcggggccttggt
2132
2151
1
4


 


SEQ ID NO: 5764
ccaatggcagttggcacat
1587
1606
SEQ ID NO: 6310
atgtggctcggggccttgg
2131
2150
1
4


 


SEQ ID NO: 5765
gtcctatcacttatgctga
1749
1768
SEQ ID NO: 6311
tcaggactggggtaaggac
4176
4195
1
4


 


SEQ ID NO: 5766
ctgagcctacaaaagaccc
1764
1783
SEQ ID NO: 6312
gggtggcttcatgcctcag
9063
9082
1
4


 


SEQ ID NO: 5767
caggtgtgtggtccagtgt
1844
1863
SEQ ID NO: 6313
acactccagttaactcctg
8817
8836
1
4


 


SEQ ID NO: 5768
tgtggtccagtgtattgct
1850
1869
SEQ ID NO: 6314
agcagggccatcaaccaca
7949
7968
1
4


 


SEQ ID NO: 5769
gcttcaccccaagtcctgt
1866
1885
SEQ ID NO: 6315
acagcagaggcggctaagc
6887
6906
1
4


 


SEQ ID NO: 5770
ctgttgtcgtggggacaac
1881
1900
SEQ ID NO: 6316
gttgcaacttggacgacag
2295
2314
1
4


 


SEQ ID NO: 5771
gccgccgcaaggcaactgg
1972
1991
SEQ ID NO: 6317
ccagttggacttatccggc
9241
9260
1
4


 


SEQ ID NO: 5772
ggcaactggttcggctgta
1982
2001
SEQ ID NO: 6318
tacacgggtgcccattgcc
7287
7306
1
4


 


SEQ ID NO: 5773
gcaactggttcggctgtac
1983
2002
SEQ ID NO: 6319
gtacacgggtgcccattgc
7286
7305
1
4


 


SEQ ID NO: 5774
ccccgtgtaacatcggggg
2043
2062
SEQ ID NO: 6320
ccccaatcgatgaacgggg
9376
9395
1
4


 


SEQ ID NO: 5775
ggactgcttccggaagcac
2092
2111
SEQ ID NO: 6321
gtgctggtaggcggagtcc
5324
5343
1
4


 


SEQ ID NO: 5776
gactgcttccggaagcacc
2093
2112
SEQ ID NO: 6322
ggtgctggtaggcggagtc
5323
5342
1
4


 


SEQ ID NO: 5777
tccggaagcaccccgaggc
2100
2119
SEQ ID NO: 6323
gcctacgagtcttcacgga
8616
8635
1
4


 


SEQ ID NO: 5778
actcaaaatgtggctcggg
2124
2143
SEQ ID NO: 6324
cccgggcagcgggtcgagt
8201
8220
1
4


 


SEQ ID NO: 5779
ggccttggttgacacctag
2142
2161
SEQ ID NO: 6325
ctagccggcccaaaaggcc
3611
3630
1
4


 


SEQ ID NO: 5780
aggagagcgttgcaacttg
2287
2306
SEQ ID NO: 6326
caagccgtgatgggctcct
8162
8181
1
4


 


SEQ ID NO: 5781
ggacagatcggagctcagc
2314
2333
SEQ ID NO: 6327
gctgggggtcattatgtcc
3128
3147
1
4


 


SEQ ID NO: 5782
cagatcggagctcagcccg
2317
2336
SEQ ID NO: 6328
cgggtggcccactgctctg
3837
3856
1
4


 


SEQ ID NO: 5783
ggagctcagcccgctgctg
2323
2342
SEQ ID NO: 6329
cagctgctgaagaggctcc
6206
6225
1
4


 


SEQ ID NO: 5784
caccctaccggctctgtcc
2383
2402
SEQ ID NO: 6330
ggactgggtgtgcacggtg
6286
6305
1
4


 


SEQ ID NO: 5785
cggctctgtccactggctt
2391
2410
SEQ ID NO: 6331
aagcaggcggaggctgccg
5564
5583
1
4


 


SEQ ID NO: 5786
ccatcagaacatcgtggac
2419
2438
SEQ ID NO: 6332
gtccccgttgagtccatgg
3929
3948
1
4


 


SEQ ID NO: 5787
ggtcagcggttgtctcctt
2460
2479
SEQ ID NO: 6333
aaggatgattctgatgacc
8875
8894
1
4


 


SEQ ID NO: 5788
gccgccttagagaacctgg
2579
2598
SEQ ID NO: 6334
ccagttggacttatccggc
9241
9260
1
4


 


SEQ ID NO: 5789
gccttagagaacctggtgg
2582
2601
SEQ ID NO: 6335
ccaccaagcaggcggaggc
5559
5578
1
4


 


SEQ ID NO: 5790
gccggagcgcacggcatcc
2621
2640
SEQ ID NO: 6336
ggattgggcccacgccggc
3214
3233
1
4


 


SEQ ID NO: 5791
gctgcatcgtgcggaggcg
2786
2805
SEQ ID NO: 6337
cgccacgacatcccgcagc
7726
7745
1
4


 


SEQ ID NO: 5792
attattgaccttgtcgcca
2824
2843
SEQ ID NO: 6338
tggcaacagacgctctaat
4647
4666
1
4


 


SEQ ID NO: 5793
tcgccatattacaaggtgt
2837
2856
SEQ ID NO: 6339
acacaatctttcctggcga
3539
3558
1
4


 


SEQ ID NO: 5794
cgccatattacaaggtgtt
2838
2857
SEQ ID NO: 6340
aacacaatctttcctggcg
3538
3557
1
4


 


SEQ ID NO: 5795
gtccggggaggccgcgatg
2939
2958
SEQ ID NO: 6341
catcggcacagtcctggac
4327
4346
1
4


 


SEQ ID NO: 5796
tcaccccactgcgggattg
3201
3220
SEQ ID NO: 6342
caatttaccaatgttgtga
8325
8344
1
4


 


SEQ ID NO: 5797
ttgggcccacgccggccta
3217
3236
SEQ ID NO: 6343
taggctaggggccgtccaa
5221
5240
1
4


 


SEQ ID NO: 5798
ctacgggaccttgcggtag
3233
3252
SEQ ID NO: 6344
ctactcctactttctgtag
9338
9357
1
4


 


SEQ ID NO: 5799
cctgtcgtcttctctgaca
3260
3279
SEQ ID NO: 6345
tgtcctacacatggacagg
7617
7636
1
4


 


SEQ ID NO: 5800
ctgtcgtcttctctgacat
3261
3280
SEQ ID NO: 6346
atgtcctacacatggacag
7616
7635
1
4


 


SEQ ID NO: 5801
cctggggggcagacaccgc
3297
3316
SEQ ID NO: 6347
gcggggtaggactggcagg
4804
4823
1
4


 


SEQ ID NO: 5802
gggggcagacaccgcggcg
3301
3320
SEQ ID NO: 6348
cgcccaactcgctcccccc
5794
5813
1
4


 


SEQ ID NO: 5803
ggcgtgtggggacatcatc
3316
3335
SEQ ID NO: 6349
gatgttattccggtgcgcc
3755
3774
1
4


 


SEQ ID NO: 5804
tggggccggccgatagtct
3378
3397
SEQ ID NO: 6350
agacgacgaccgtgcccca
4761
4780
1
4


 


SEQ ID NO: 5805
gaaccaggtcgagggggag
3499
3518
SEQ ID NO: 6351
ctccacctatggcaagttc
4222
4241
1
4


 


SEQ ID NO: 5806
gagggggaggttcaagtgg
3509
3528
SEQ ID NO: 6352
ccacctgtcaaggcccctc
7304
7323
1
4


 


SEQ ID NO: 5807
aggcccaatcgcccagatg
3625
3644
SEQ ID NO: 6353
catcccgcagcgcgggcct
7734
7753
1
4


 


SEQ ID NO: 5808
ggcccaatcgcccagatgt
3626
3645
SEQ ID NO: 6354
acatcccgcagcgcgggcc
7733
7752
1
4


 


SEQ ID NO: 5809
caggatctcgtcggctggc
3659
3678
SEQ ID NO: 6355
gccaataggccatttcctg
9410
9429
1
4


 


SEQ ID NO: 5810
aggatctcgtcggctggcc
3660
3679
SEQ ID NO: 6356
ggccaataggccatttcct
9409
9428
1
4


 


SEQ ID NO: 5811
gccccccggggcgcgttcc
3682
3701
SEQ ID NO: 6357
ggaacctatccagcagggc
7938
7957
1
4


 


SEQ ID NO: 5812
gcacctgtggcagctcgga
3711
3730
SEQ ID NO: 6358
tccggtggtacacgggtgc
7279
7298
1
4


 


SEQ ID NO: 5813
ctgtggcagctcggacctt
3715
3734
SEQ ID NO: 6359
aaggcaaaggcgtccacag
7826
7845
1
4


 


SEQ ID NO: 5814
gcggggcgacaatagaggg
3775
3794
SEQ ID NO: 6360
ccctgcctgggaaccccgc
5682
5701
1
4


 


SEQ ID NO: 5815
ggagcttgctctcccccag
3792
3811
SEQ ID NO: 6361
ctggttgggtcacagctcc
6806
6825
1
4


 


SEQ ID NO: 5816
gagcttgctctcccccagg
3793
3812
SEQ ID NO: 6362
cctggttgggtcacagctc
6805
6824
1
4


 


SEQ ID NO: 5817
acttgaagggctcttcggg
3822
3841
SEQ ID NO: 6363
cccgtggtggagtccaagt
5585
5604
1
4


 


SEQ ID NO: 5818
tgtccccgttgagtccatg
3928
3947
SEQ ID NO: 6364
catggtctacgccacgaca
7717
7736
1
4


 


SEQ ID NO: 5819
gaaactactatgcggtccc
3947
3966
SEQ ID NO: 6365
gggaaggcacctcattttc
4504
4523
1
4


 


SEQ ID NO: 5820
aaactactatgcggtcccc
3948
3967
SEQ ID NO: 6366
ggggggcatatacaggttt
4828
4847
1
4


 


SEQ ID NO: 5821
ctcccactggcagcggcaa
4032
4051
SEQ ID NO: 6367
ttgccaggaccatctggag
4993
5012
1
4


 


SEQ ID NO: 5822
ggcgtatatgtctaaagca
4138
4157
SEQ ID NO: 6368
tgctcgccaccgctacgcc
4377
4396
1
4


 


SEQ ID NO: 5823
gcgtatatgtctaaagcac
4139
4158
SEQ ID NO: 6369
gtgctcgccaccgctacgc
4376
4395
1
4


 


SEQ ID NO: 5824
tggggtaaggaccattacc
4183
4202
SEQ ID NO: 6370
ggtaaccatgtctccccca
6119
6138
1
4


 


SEQ ID NO: 5825
accattaccacgggcgccc
4193
4212
SEQ ID NO: 6371
gggcgctggtatcgctggt
5833
5852
1
4


 


SEQ ID NO: 5826
cgtactccacctatggcaa
4218
4237
SEQ ID NO: 6372
ttgccccaaccagaatacg
8669
8688
1
4


 


SEQ ID NO: 5827
cagtcctggaccaagcgga
4335
4354
SEQ ID NO: 6373
tccgtgagccgcatgactg
9560
9579
1
4


 


SEQ ID NO: 5828
aggggggaaggcacctcat
4500
4519
SEQ ID NO: 6374
atgagcggcgaggcgccct
5948
5967
1
4


 


SEQ ID NO: 5829
cactccaagaagaagtgcg
4526
4545
SEQ ID NO: 6375
cgcatgactgcagagagtg
9569
9588
1
4


 


SEQ ID NO: 5830
atcaatgctgtagcgtatt
4577
4596
SEQ ID NO: 6376
aatacgacttggagttgat
8682
8701
1
4


 


SEQ ID NO: 5831
cataccgaccagcggagac
4618
4637
SEQ ID NO: 6377
gtctcccccacgcactatg
6128
6147
1
4


 


SEQ ID NO: 5832
aggactggcaggggcaggg
4811
4830
SEQ ID NO: 6378
ccctgccatcctctctcct
5992
6011
1
4


 


SEQ ID NO: 5833
gggaacggccctcgggcat
4857
4876
SEQ ID NO: 6379
atgctcaccgacccctccc
6863
6882
1
4


 


SEQ ID NO: 5834
cgggcatgttcgattcctc
4869
4888
SEQ ID NO: 6380
gaggccgcaagccagcccg
8067
8086
1
4


 


SEQ ID NO: 5835
tggtacgagctcacccccg
4922
4941
SEQ ID NO: 6381
cggggacttgccccaacca
8662
8681
1
4


 


SEQ ID NO: 5836
gggcttacctaaatacacc
4962
4981
SEQ ID NO: 6382
ggtggctccatcttagccc
9518
9537
1
4


 


SEQ ID NO: 5837
ggcttacctaaatacacca
4963
4982
SEQ ID NO: 6383
tggtggctccatcttagcc
9517
9536
1
4


 


SEQ ID NO: 5838
gagataacttcccctacct
5082
5101
SEQ ID NO: 6384
aggttggccagggggtctc
6908
6927
1
4


 


SEQ ID NO: 5839
cccacctccatcgtgggat
5140
5159
SEQ ID NO: 6385
atccaagtttggctatggg
7906
7925
1
4


 


SEQ ID NO: 5840
catggcatgcatgtcggcc
5278
5297
SEQ ID NO: 6386
ggcctctctgcagatcatg
9596
9615
1
4


 


SEQ ID NO: 5841
ggccgacctggaagtcgtc
5293
5312
SEQ ID NO: 6387
gacgcccccacattcggcc
7885
7904
1
4


 


SEQ ID NO: 5842
gccgacctggaagtcgtca
5294
5313
SEQ ID NO: 6388
tgacgcccccacattcggc
7884
7903
1
4


 


SEQ ID NO: 5843
tggaagtcgtcaccagcac
5301
5320
SEQ ID NO: 6389
gtgcccatgtcaggttcca
6676
6695
1
4


 


SEQ ID NO: 5844
gcacctgggtgctggtagg
5316
5335
SEQ ID NO: 6390
cctacacatggacaggtgc
7620
7639
1
4


 


SEQ ID NO: 5845
ggttatcgtgggtaggatc
5383
5402
SEQ ID NO: 6391
gatcatcgggccgaaaacc
6478
6497
1
4


 


SEQ ID NO: 5846
cccgatagggaagtcctct
5429
5448
SEQ ID NO: 6392
agagcggctttatatcggg
8383
8402
1
4


 


SEQ ID NO: 5847
tgaaatggaagaatgcgcc
5461
5480
SEQ ID NO: 6393
ggcgcgctcgtggccttca
5924
5943
1
4


 


SEQ ID NO: 5848
ccaagtggcgagctttgga
5598
5617
SEQ ID NO: 6394
tccattgttagagtcttgg
7240
7259
1
4


 


SEQ ID NO: 5849
ttcatcagcgggatacagt
5645
5664
SEQ ID NO: 6395
actgcacgatgctcgtgaa
8541
8560
1
4


 


SEQ ID NO: 5850
agcgggcttatccaccctg
5668
5687
SEQ ID NO: 6396
caggggtggctggcgcgct
5913
5932
1
4


 


SEQ ID NO: 5851
ccagcccgctcaccaccca
5736
5755
SEQ ID NO: 6397
tgggcgctggtatcgctgg
5832
5851
1
4


 


SEQ ID NO: 5852
gtgggcgctggtatcgctg
5831
5850
SEQ ID NO: 6398
cagcagggccatcaaccac
7948
7967
1
4


 


SEQ ID NO: 5853
ggaaggtgctagtggacat
5877
5896
SEQ ID NO: 6399
atgtggtctccacccttcc
8142
8161
1
4


 


SEQ ID NO: 5854
ggtcatgagcggcgaggcg
5944
5963
SEQ ID NO: 6400
cgcccctcctgaccagacc
7453
7472
1
4


 


SEQ ID NO: 5855
catgtgggcccgggagagg
6056
6075
SEQ ID NO: 6401
cctccttgagggcgacatg
6969
6988
1
4


 


SEQ ID NO: 5856
atgtgggcccgggagaggg
6057
6076
SEQ ID NO: 6402
ccctccttgagggcgacat
6968
6987
1
4


 


SEQ ID NO: 5857
ggggccgtgcagtggatga
6074
6093
SEQ ID NO: 6403
tcatgctcctctatgcccc
7505
7524
1
4


 


SEQ ID NO: 5858
gcgttcgcttcgcggggta
6104
6123
SEQ ID NO: 6404
taccaccacgagcttacgc
2751
2770
1
4


 


SEQ ID NO: 5859
ggggtaaccatgtctcccc
6117
6136
SEQ ID NO: 6405
gggggagccgggggacccc
7531
7550
1
4


 


SEQ ID NO: 5860
catcacccagctgctgaag
6199
6218
SEQ ID NO: 6406
cttcgagcggagggggatg
7130
7149
1
4


 


SEQ ID NO: 5861
aggactgttctacgccgtg
6240
6259
SEQ ID NO: 6407
cacggcgaccgcccctcct
7444
7463
1
4


 


SEQ ID NO: 5862
ttcaagacctggctccagt
6314
6333
SEQ ID NO: 6408
actgcacgatgctcgtgaa
8541
8560
1
4


 


SEQ ID NO: 5863
ctcctgccgcggttaccgg
6338
6357
SEQ ID NO: 6409
ccgggacgtgcttaaggag
7804
7823
1
4


 


SEQ ID NO: 5864
caccacgggcccctgcacg
6538
6557
SEQ ID NO: 6410
cgtggaggtcacgcgggtg
6613
6632
1
4


 


SEQ ID NO: 5865
ggaggtcacgcgggtgggg
6616
6635
SEQ ID NO: 6411
cccctccaataccacctcc
7317
7336
1
4


 


SEQ ID NO: 5866
gaggtcacgcgggtggggg
6617
6636
SEQ ID NO: 6412
cccctcctgaccagacctc
7455
7474
1
4


 


SEQ ID NO: 5867
atgtcaggttccagctcct
6682
6701
SEQ ID NO: 6413
aggagatgggcggaaacat
7059
7078
1
4


 


SEQ ID NO: 5868
atgaaatatccattgcggc
7152
7171
SEQ ID NO: 6414
gccgtgatgggctcctcat
8165
8184
1
4


 


SEQ ID NO: 5869
ctccattgttagagtcttg
7239
7258
SEQ ID NO: 6415
caagtggcgagctttggag
5599
5618
1
4


 


SEQ ID NO: 5870
tgcccattgccacctgtca
7295
7314
SEQ ID NO: 6416
tgactaattcaaaagggca
8409
8428
1
4


 


SEQ ID NO: 5871
accacctccacggagaaaa
7327
7346
SEQ ID NO: 6417
ttttttccctctttatggt
9502
9521
1
4


 


SEQ ID NO: 5872
ccacctccacggagaaaaa
7328
7347
SEQ ID NO: 6418
ttttccctctttatggtgg
9504
9523
1
4


 


SEQ ID NO: 5873
acctccacggagaaaaagg
7330
7349
SEQ ID NO: 6419
cctttgacagactgcaggt
7770
7789
1
4


 


SEQ ID NO: 5874
ggttgtcctgacggactcc
7351
7370
SEQ ID NO: 6420
ggagctcgctaccaaaacc
7390
7409
1
4


 


SEQ ID NO: 5875
cctgaccagacctccgaca
7460
7479
SEQ ID NO: 6421
tgtcctacacatggacagg
7617
7636
1
4


 


SEQ ID NO: 5876
agcaagctgcccatcaacg
7667
7686
SEQ ID NO: 6422
cgttgagcaactctttgct
7686
7705
1
4


 


SEQ ID NO: 5877
ggatgaccattaccgggac
7792
7811
SEQ ID NO: 6423
gtcccagttggacttatcc
9238
9257
1
4


 


SEQ ID NO: 5878
tggcaaagaatgaggtttt
8028
8047
SEQ ID NO: 6424
aaaaagccctggattgcca
8931
8950
1
4


 


SEQ ID NO: 5879
ggcaaagaatgaggttttc
8029
8048
SEQ ID NO: 6425
gaaaaagccctggattgcc
8930
8949
1
4


 


SEQ ID NO: 5880
gggcagcgggtcgagttcc
8204
8223
SEQ ID NO: 6426
ggaagaaagcaagctgccc
7660
7679
1
4


 


SEQ ID NO: 5881
gactagctgcggtaatacc
8470
8489
SEQ ID NO: 6427
ggtaccgcccttgcgagtc
9091
9110
1
4


 


SEQ ID NO: 5882
ctcgcgatcccaccacccc
8766
8785
SEQ ID NO: 6428
ggggtaccgcccttgcgag
9089
9108
1
4


 


SEQ ID NO: 5883
aggatgattctgatgaccc
8876
8895
SEQ ID NO: 6429
gggtcagcggttgtctcct
2459
2478
1
4


 


SEQ ID NO: 5884
agccacttgacctacctca
8976
8995
SEQ ID NO: 6430
tgagatcaatagggtggct
9052
9071
1
4


 


SEQ ID NO: 5885
gggtaccgcccttgcgagt
9090
9109
SEQ ID NO: 6431
actcgcgatcccaccaccc
8765
8784
1
4


 


SEQ ID NO: 5886
ctgcaatgactccctccag
1624
1643
SEQ ID NO: 6432
ctggcgggctatggggcag
5897
5916
3
3


 


SEQ ID NO: 5887
ccagcccccgattgggggc
1
20
SEQ ID NO: 6433
gcccactggggagtcctgg
1391
1410
2
3


 


SEQ ID NO: 5888
aaggcgacagcctatcccc
520
539
SEQ ID NO: 6434
gggggtctcccccctcctt
6918
6937
2
3


 


SEQ ID NO: 5889
ggccccacggacccccggc
662
681
SEQ ID NO: 6435
gccgcaaagctgtcaggcc
4553
4572
2
3


 


SEQ ID NO: 5890
gaggcggcggacttgatca
983
1002
SEQ ID NO: 6436
tgataacatcatgttcctc
8697
8716
2
3


 


SEQ ID NO: 5891
ctgcaattgttcgatctac
1249
1268
SEQ ID NO: 6437
gtaggcggagtcctcgcag
5330
5349
2
3


 


SEQ ID NO: 5892
ctccagactgggtttcttg
1637
1656
SEQ ID NO: 6438
caagtggcgagctttggag
5599
5618
2
3


 


SEQ ID NO: 5893
tcgtacctgcgtcgcaggt
1830
1849
SEQ ID NO: 6439
acctcagatcattgaacga
8989
9008
2
3


 


SEQ ID NO: 5894
caagacgtgcggggccccc
2026
2045
SEQ ID NO: 6440
gggggagggccgccacttg
9156
9175
2
3


 


SEQ ID NO: 5895
aatgctgcatgcaactgga
2264
2283
SEQ ID NO: 6441
tccaggccaataggccatt
9405
9424
2
3


 


SEQ ID NO: 5896
caccctaccggctctgtcc
2383
2402
SEQ ID NO: 6442
ggactacgtccctccggtg
7267
7286
2
3


 


SEQ ID NO: 5897
cgccatattacaaggtgtt
2838
2857
SEQ ID NO: 6443
aacagccaccaagcaggcg
5554
5573
2
3


 


SEQ ID NO: 5898
cgaagccatcaagggggga
4489
4508
SEQ ID NO: 6444
tcccagatttgggagttcg
8097
8116
2
3


 


SEQ ID NO: 5899
ccagcccgctcaccaccca
5736
5755
SEQ ID NO: 6445
tgggtacaagggagtctgg
6382
6401
2
3


 


SEQ ID NO: 5900
ggctatgactaggtactcc
8635
8654
SEQ ID NO: 6446
ggagacatatatcacagcc
9284
9303
2
3


 


SEQ ID NO: 5901
ctccaccatagatcactcc
24
43
SEQ ID NO: 6447
ggagacatcgggccaggag
9111
9130
1
3


 


SEQ ID NO: 5902
tccaccatagatcactccc
25
44
SEQ ID NO: 6448
gggagttcgatgaaatgga
5451
5470
1
3


 


SEQ ID NO: 5903
caccatagatcactcccct
27
46
SEQ ID NO: 6449
aggggccccaggttgggtg
458
477
1
3


 


SEQ ID NO: 5904
tcactcccctgtgaggaac
36
55
SEQ ID NO: 6450
gttctggaggacggcgtga
809
828
1
3


 


SEQ ID NO: 5905
cgttagtatgagtgtcgtg
88
107
SEQ ID NO: 6451
cacgctgcacgggccaacg
5191
5210
1
3


 


SEQ ID NO: 5906
tgtcgtgcagcctccagga
100
119
SEQ ID NO: 6452
tcctgttgtcgtggggaca
1879
1898
1
3


 


SEQ ID NO: 5907
ccccccctcccgggagagc
119
138
SEQ ID NO: 6453
gctcccggcctagttgggg
645
664
1
3


 


SEQ ID NO: 5908
ggagagccatagtggtctg
131
150
SEQ ID NO: 6454
cagatcattgaacgactcc
8993
9012
1
3


 


SEQ ID NO: 5909
gagccatagtggtctgcgg
134
153
SEQ ID NO: 6455
ccgctgctgggtagcgctc
1048
1067
1
3


 


SEQ ID NO: 5910
gtggtctgcggaaccggtg
142
161
SEQ ID NO: 6456
cacccatatagatgcccac
5038
5057
1
3


 


SEQ ID NO: 5911
agtacaccggaattgccag
161
180
SEQ ID NO: 6457
ctggcgggccttgcctact
1406
1425
1
3


 


SEQ ID NO: 5912
ggtcctttcttggatcaac
188
207
SEQ ID NO: 6458
gttgagtgacttcaagacc
6304
6323
1
3


 


SEQ ID NO: 5913
ttcttggatcaacccgctc
194
213
SEQ ID NO: 6459
gagcggagggggatgagaa
7134
7153
1
3


 


SEQ ID NO: 5914
ctcaatgcctggagatttg
210
229
SEQ ID NO: 6460
caaagactccgacgctgag
7486
7505
1
3


 


SEQ ID NO: 5915
tgcctggagatttgggcgt
215
234
SEQ ID NO: 6461
acgcggccgccgcaaggca
1967
1986
1
3


 


SEQ ID NO: 5916
gcctggagatttgggcgtg
216
235
SEQ ID NO: 6462
cacgcggccgccgcaaggc
1966
1985
1
3


 


SEQ ID NO: 5917
gagatttgggcgtgccccc
221
240
SEQ ID NO: 6463
ggggacaaccgatcgtctc
1891
1910
1
3


 


SEQ ID NO: 5918
aaaggccttgtggtactgc
273
292
SEQ ID NO: 6464
gcagaagaaggtcaccttt
7756
7775
1
3


 


SEQ ID NO: 5919
aaggccttgtggtactgcc
274
293
SEQ ID NO: 6465
ggcagaagaaggtcacctt
7755
7774
1
3


 


SEQ ID NO: 5920
gtggtactgcctgataggg
282
301
SEQ ID NO: 6466
ccctaccggctctgtccac
2385
2404
1
3


 


SEQ ID NO: 5921
cctgatagggtgcttgcga
291
310
SEQ ID NO: 6467
tcgccggcccgagggcagg
544
563
1
3


 


SEQ ID NO: 5922
cgagtgccccgggaggtct
307
326
SEQ ID NO: 6468
agacgcagtgtcgcgctcg
4780
4799
1
3


 


SEQ ID NO: 5923
gccccgggaggtctcgtag
312
331
SEQ ID NO: 6469
ctaccttaggttttggggc
4122
4141
1
3


 


SEQ ID NO: 5924
ttacctgttgccgcgcagg
442
461
SEQ ID NO: 6470
cctgcgttcgggagggtaa
1023
1042
1
3


 


SEQ ID NO: 5925
tacctgttgccgcgcaggg
443
462
SEQ ID NO: 6471
ccctgcgttcgggagggta
1022
1041
1
3


 


SEQ ID NO: 5926
cctgttgccgcgcaggggc
445
464
SEQ ID NO: 6472
gcccccgaagccagacagg
8348
8367
1
3


 


SEQ ID NO: 5927
ctgttgccgcgcaggggcc
446
465
SEQ ID NO: 6473
ggcccccgaagccagacag
8347
8366
1
3


 


SEQ ID NO: 5928
tccgagcggtcgcaacccc
497
516
SEQ ID NO: 6474
ggggcaaaggacgtccgga
7922
7941
1
3


 


SEQ ID NO: 5929
ggtcgcaaccccgtggaag
504
523
SEQ ID NO: 6475
cttctctgacatggagacc
3268
3287
1
3


 


SEQ ID NO: 5930
gtcgcaaccccgtggaagg
505
524
SEQ ID NO: 6476
ccttcaccattgagacgac
4749
4768
1
3


 


SEQ ID NO: 5931
aaggcgacagcctatcccc
520
539
SEQ ID NO: 6477
ggggcgctgccagggcctt
774
793
1
3


 


SEQ ID NO: 5932
cagcctatccccaaggctc
527
546
SEQ ID NO: 6478
gagcacaggcttaatgctg
2252
2271
1
3


 


SEQ ID NO: 5933
gagggcagggcctgggctc
554
573
SEQ ID NO: 6479
gagcgtcttcacaggcctc
5020
5039
1
3


 


SEQ ID NO: 5934
cagggcctgggctcagccc
559
578
SEQ ID NO: 6480
gggcatcggcacagtcctg
4324
4343
1
3


 


SEQ ID NO: 5935
gggcctgggctcagcccgg
561
580
SEQ ID NO: 6481
ccggccgcatatgcggccc
4064
4083
1
3


 


SEQ ID NO: 5936
cctgggctcagcccgggta
564
583
SEQ ID NO: 6482
taccgaccctaacatcagg
4162
4181
1
3


 


SEQ ID NO: 5937
cccctctatggcaatgagg
590
609
SEQ ID NO: 6483
cctcgccgacctcatgggg
727
746
1
3


 


SEQ ID NO: 5938
gagggcatggggtgggcag
605
624
SEQ ID NO: 6484
ctgcggatctgttttcctc
1180
1199
1
3


 


SEQ ID NO: 5939
agggcatggggtgggcagg
606
625
SEQ ID NO: 6485
cctgctctttcaccaccct
2370
2389
1
3


 


SEQ ID NO: 5940
aggatggctcctgtcaccc
622
641
SEQ ID NO: 6486
gggtcagcggttgtctcct
2459
2478
1
3


 


SEQ ID NO: 5941
gatggctcctgtcaccccg
624
643
SEQ ID NO: 6487
cgggggcgcttacgacatc
4261
4280
1
3


 


SEQ ID NO: 5942
tgtcaccccgcggctcccg
633
652
SEQ ID NO: 6488
cggggcgcgttccctgaca
3688
3707
1
3


 


SEQ ID NO: 5943
gtcaccccgcggctcccgg
634
653
SEQ ID NO: 6489
ccggggcgcgttccctgac
3687
3706
1
3


 


SEQ ID NO: 5944
gcggctcccggcctagttg
642
661
SEQ ID NO: 6490
caacgtccggggaggccgc
2935
2954
1
3


 


SEQ ID NO: 5945
ctcccggcctagttggggc
646
665
SEQ ID NO: 6491
gccctgtcgaacactggag
4439
4458
1
3


 


SEQ ID NO: 5946
ataccctcacatgcggcct
711
730
SEQ ID NO: 6492
aggcaacattatcatgtat
8839
8858
1
3


 


SEQ ID NO: 5947
ttccgctcgtcggcggccc
750
769
SEQ ID NO: 6493
gggcaaagcacatgtggaa
5625
5644
1
3


 


SEQ ID NO: 5948
cccctagggggcgctgcca
767
786
SEQ ID NO: 6494
tggcaatgagggcatgggg
598
617
1
3


 


SEQ ID NO: 5949
tgcaacagggaacctgccc
832
851
SEQ ID NO: 6495
gggctcattcgtgcatgca
3092
3111
1
3


 


SEQ ID NO: 5950
gcgtaacgcgtccggggta
922
941
SEQ ID NO: 6496
taccaccacgagcttacgc
2751
2770
1
3


 


SEQ ID NO: 5951
tcaagcattgtgtttgagg
968
987
SEQ ID NO: 6497
cctctatgcccccccttga
7512
7531
1
3


 


SEQ ID NO: 5952
cccacgctcgcggccagga
1070
1089
SEQ ID NO: 6498
tcctgtttaacatcttggg
5763
5782
1
3


 


SEQ ID NO: 5953
cggccaggaatgctaccat
1080
1099
SEQ ID NO: 6499
atggcatgcatgtcggccg
5279
5298
1
3


 


SEQ ID NO: 5954
acgacaatacgacaccacg
1106
1125
SEQ ID NO: 6500
cgtggggacaaccgatcgt
1888
1907
1
3


 


SEQ ID NO: 5955
gggcggctgctctctgctc
1140
1159
SEQ ID NO: 6501
gagcaacttgaaaaagccc
8921
8940
1
3


 


SEQ ID NO: 5956
cgtgggggacctctgcgga
1168
1187
SEQ ID NO: 6502
tccgttgccggagcgcacg
2615
2634
1
3


 


SEQ ID NO: 5957
agctgttcaccttctcgcc
1206
1225
SEQ ID NO: 6503
ggcgacaatagagggagct
3779
3798
1
3


 


SEQ ID NO: 5958
ctgttcaccttctcgcccc
1208
1227
SEQ ID NO: 6504
ggggagacatatatcacag
9282
9301
1
3


 


SEQ ID NO: 5959
ctgcaattgttcgatctac
1249
1268
SEQ ID NO: 6505
gtaggactggcaggggcag
4809
4828
1
3


 


SEQ ID NO: 5960
attgttcgatctaccccgg
1254
1273
SEQ ID NO: 6506
ccggcccaaaaggcccaat
3615
3634
1
3


 


SEQ ID NO: 5961
atctaccccggccacgcgt
1262
1281
SEQ ID NO: 6507
acgccatggaccgggagat
2766
2785
1
3


 


SEQ ID NO: 5962
cggccacgcgtcaggtcac
1270
1289
SEQ ID NO: 6508
gtgatgctactttttgccg
1460
1479
1
3


 


SEQ ID NO: 5963
ccgcatggcctgggacatg
1288
1307
SEQ ID NO: 6509
catggaaactactatgcgg
3943
3962
1
3


 


SEQ ID NO: 5964
cgcagttactccggatccc
1344
1363
SEQ ID NO: 6510
gggaacccaggaggatgcg
8593
8612
1
3


 


SEQ ID NO: 5965
cccacaagccgtcatcgac
1360
1379
SEQ ID NO: 6511
gtcgtcaccagcacctggg
5306
5325
1
3


 


SEQ ID NO: 5966
ctggggagtcctggcgggc
1396
1415
SEQ ID NO: 6512
gcccggagcgcatggccag
1695
1714
1
3


 


SEQ ID NO: 5967
ggcgggccttgcctactat
1408
1427
SEQ ID NO: 6513
atagaagaagcctgccgcc
7865
7884
1
3


 


SEQ ID NO: 5968
tttgccggcgttgacgggc
1472
1491
SEQ ID NO: 6514
gcccccacattcggccaaa
7888
7907
1
3


 


SEQ ID NO: 5969
caccctcacaacggggggg
1492
1511
SEQ ID NO: 6515
ccccaatatcgaggaggtg
4420
4439
1
3


 


SEQ ID NO: 5970
gggggggcacgctgcccgc
1504
1523
SEQ ID NO: 6516
gcggcacggcgaccgcccc
7440
7459
1
3


 


SEQ ID NO: 5971
ggggcacgctgcccgcctc
1507
1526
SEQ ID NO: 6517
gagggagcttgctctcccc
3789
3808
1
3


 


SEQ ID NO: 5972
gcccgcctcaccagcgggt
1517
1536
SEQ ID NO: 6518
accctcacaacgggggggc
1493
1512
1
3


 


SEQ ID NO: 5973
atccagcttataaacacca
1571
1590
SEQ ID NO: 6519
tggttatcgtgggtaggat
5382
5401
1
3


 


SEQ ID NO: 5974
ctccagactgggtttcttg
1637
1656
SEQ ID NO: 6520
caagcggagacggctggag
4346
4365
1
3


 


SEQ ID NO: 5975
cccggagcgcatggccagc
1696
1715
SEQ ID NO: 6521
gctgtgggcgtcttccggg
3869
3888
1
3


 


SEQ ID NO: 5976
ctgccgctccattgacaag
1714
1733
SEQ ID NO: 6522
cttggtacatcaagggcag
2667
2686
1
3


 


SEQ ID NO: 5977
aagttcgaccagggatggg
1730
1749
SEQ ID NO: 6523
cccaaccagaatacgactt
8673
8692
1
3


 


SEQ ID NO: 5978
ggggtcctatcacttatgc
1746
1765
SEQ ID NO: 6524
gcatgtgtgggttcccccc
2914
2933
1
3


 


SEQ ID NO: 5979
ccagaggccttattgctgg
1786
1805
SEQ ID NO: 6525
ccaggatctcgtcggctgg
3658
3677
1
3


 


SEQ ID NO: 5980
cccacctcaacaatgtggt
1810
1829
SEQ ID NO: 6526
accaagatcatcacctggg
3284
3303
1
3


 


SEQ ID NO: 5981
tcgtacctgcgtcgcaggt
1830
1849
SEQ ID NO: 6527
accttcaccattgagacga
4748
4767
1
3


 


SEQ ID NO: 5982
tgcgtcgcaggtgtgtggt
1837
1856
SEQ ID NO: 6528
accatgtctcccccacgca
6123
6142
1
3


 


SEQ ID NO: 5983
tggggacaaccgatcgtct
1890
1909
SEQ ID NO: 6529
agacgacgaccgtgcccca
4761
4780
1
3


 


SEQ ID NO: 5984
cagctggggggagaacgat
1924
1943
SEQ ID NO: 6530
atcggagctcagcccgctg
2320
2339
1
3


 


SEQ ID NO: 5985
cgccgcaaggcaactggtt
1974
1993
SEQ ID NO: 6531
aacccaggaggatgcggcg
8596
8615
1
3


 


SEQ ID NO: 5986
gccgcaaggcaactggttc
1975
1994
SEQ ID NO: 6532
gaacccaggaggatgcggc
8595
8614
1
3


 


SEQ ID NO: 5987
ctgtacatggatgaatagc
1996
2015
SEQ ID NO: 6533
gctataaaatcgctcacag
8366
8385
1
3


 


SEQ ID NO: 5988
tgtacatggatgaatagca
1997
2016
SEQ ID NO: 6534
tgctgctcaatgtcctaca
7607
7626
1
3


 


SEQ ID NO: 5989
gttcaccaagacgtgcggg
2020
2039
SEQ ID NO: 6535
cccgctcaccacccagaac
5740
5759
1
3


 


SEQ ID NO: 5990
agacgtgcggggccccccc
2028
2047
SEQ ID NO: 6536
ggggaggttcaagtggtct
3512
3531
1
3


 


SEQ ID NO: 5991
cccccgtgtaacatcgggg
2042
2061
SEQ ID NO: 6537
ccccaatcgatgaacgggg
9376
9395
1
3


 


SEQ ID NO: 5992
taacaccttgacctgcccc
2071
2090
SEQ ID NO: 6538
ggggacgaccttgtcgtta
8561
8580
1
3


 


SEQ ID NO: 5993
ggctctggcactacccctg
2184
2203
SEQ ID NO: 6539
caggaggatgcggcgagcc
8600
8619
1
3


 


SEQ ID NO: 5994
tgcactgtcaacttctcca
2201
2220
SEQ ID NO: 6540
tggatggggtgcggttgca
6717
6736
1
3


 


SEQ ID NO: 5995
caggcttaatgctgcatgc
2257
2276
SEQ ID NO: 6541
gcatcatgcacaccacctg
6411
6430
1
3


 


SEQ ID NO: 5996
aatgctgcatgcaactgga
2264
2283
SEQ ID NO: 6542
tccatggtcttagcgcatt
9009
9028
1
3


 


SEQ ID NO: 5997
ctgcatgcaactggacccg
2268
2287
SEQ ID NO: 6543
cgggaccttgcggtagcag
3236
3255
1
3


 


SEQ ID NO: 5998
caactggacccgaggagag
2275
2294
SEQ ID NO: 6544
ctcttacgggatgaggttg
6761
6780
1
3


 


SEQ ID NO: 5999
gacagggacagatcggagc
2309
2328
SEQ ID NO: 6545
gctctcccccaggcctgtc
3799
3818
1
3


 


SEQ ID NO: 6000
gacagatcggagctcagcc
2315
2334
SEQ ID NO: 6546
ggctggagcgcggcttgtc
4357
4376
1
3


 


SEQ ID NO: 6001
acagatcggagctcagccc
2316
2335
SEQ ID NO: 6547
gggccaacgcccctgctgt
5201
5220
1
3


 


SEQ ID NO: 6002
actggcttgatccacctcc
2402
2421
SEQ ID NO: 6548
ggagagggggccgtgcagt
6068
6087
1
3


 


SEQ ID NO: 6003
ggcttgatccacctccatc
2405
2424
SEQ ID NO: 6549
gatgatgctgctgatagcc
2551
2570
1
3


 


SEQ ID NO: 6004
gtcagcggttgtctccttt
2461
2480
SEQ ID NO: 6550
aaaggacggttgtcctgac
7344
7363
1
3


 


SEQ ID NO: 6005
gagtatgtcgtgttgcttt
2492
2511
SEQ ID NO: 6551
aaagaccaagctcaaactc
9202
9221
1
3


 


SEQ ID NO: 6006
tgtggatgatgctgctgat
2547
2566
SEQ ID NO: 6552
atcactgatggcattcaca
5707
5726
1
3


 


SEQ ID NO: 6007
ccgaggccgccttagagaa
2574
2593
SEQ ID NO: 6553
ttctgattgccatactcgg
3015
3034
1
3


 


SEQ ID NO: 6008
agaacctggtggccctcaa
2589
2608
SEQ ID NO: 6554
ttgatatcaccaaacttct
3000
3019
1
3


 


SEQ ID NO: 6009
tacatcaagggcaggctgg
2672
2691
SEQ ID NO: 6555
ccagatgtacactaatgta
3637
3656
1
3


 


SEQ ID NO: 6010
caagggcaggctggtccct
2677
2696
SEQ ID NO: 6556
aggggtaggcatctacttg
9355
9374
1
3


 


SEQ ID NO: 6011
gcatggccgctgctcctgc
2720
2739
SEQ ID NO: 6557
gcagtgctcacttccatgc
6848
6867
1
3


 


SEQ ID NO: 6012
catggccgctgctcctgct
2721
2740
SEQ ID NO: 6558
agcagtgctcacttccatg
6847
6866
1
3


 


SEQ ID NO: 6013
gccgctgctcctgctcctc
2725
2744
SEQ ID NO: 6559
gagggccgccacttgcggc
9160
9179
1
3


 


SEQ ID NO: 6014
ggagatggctgcatcgtgc
2779
2798
SEQ ID NO: 6560
gcacggcgaccgcccctcc
7443
7462
1
3


 


SEQ ID NO: 6015
atggctgcatcgtgcggag
2783
2802
SEQ ID NO: 6561
ctccaggccaataggccat
9404
9423
1
3


 


SEQ ID NO: 6016
ggcgcggtttttgtgggtc
2801
2820
SEQ ID NO: 6562
gaccattaccacgggcgcc
4192
4211
1
3


 


SEQ ID NO: 6017
tcttatcaccagagctgag
2887
2906
SEQ ID NO: 6563
ctcacaggccgggacaaga
3482
3501
1
3


 


SEQ ID NO: 6018
gtgtgggttccccccctca
2918
2937
SEQ ID NO: 6564
tgaggtcaccctcacacac
5242
5261
1
3


 


SEQ ID NO: 6019
tccccccctcaacgtccgg
2926
2945
SEQ ID NO: 6565
ccggctcgtggctgaggga
6261
6280
1
3


 


SEQ ID NO: 6020
ctcaacgtccggggaggcc
2933
2952
SEQ ID NO: 6566
ggcctgttactccattgag
8959
8978
1
3


 


SEQ ID NO: 6021
accaaacttctgattgcca
3008
3027
SEQ ID NO: 6567
tggctctctacgatgtggt
8130
8149
1
3


 


SEQ ID NO: 6022
caaacttctgattgccata
3010
3029
SEQ ID NO: 6568
tatgacacccgctgttttg
8267
8286
1
3


 


SEQ ID NO: 6023
ggaccgctcatggtgctcc
3032
3051
SEQ ID NO: 6569
ggagatcctgcggaagtcc
7171
7190
1
3


 


SEQ ID NO: 6024
gaccgctcatggtgctcca
3033
3052
SEQ ID NO: 6570
tggaaactactatgcggtc
3945
3964
1
3


 


SEQ ID NO: 6025
atgcatgttagtgcggaaa
3106
3125
SEQ ID NO: 6571
tttctgtaggggtaggcat
9348
9367
1
3


 


SEQ ID NO: 6026
ttatgtccaaatggccttc
3139
3158
SEQ ID NO: 6572
gaagccagacaggctataa
8354
8373
1
3


 


SEQ ID NO: 6027
ccaaatggccttcatgaga
3145
3164
SEQ ID NO: 6573
tctcagcgacgggtcttgg
7552
7571
1
3


 


SEQ ID NO: 6028
ccttcatgagactgggcgc
3153
3172
SEQ ID NO: 6574
gcgctcgtggccttcaagg
5927
5946
1
3


 


SEQ ID NO: 6029
ccttgcggtagcagtggag
3241
3260
SEQ ID NO: 6575
ctccgcccgaaggggaagg
3349
3368
1
3


 


SEQ ID NO: 6030
tgtcgtcttctctgacatg
3262
3281
SEQ ID NO: 6576
catggtctacgccacgaca
7717
7736
1
3


 


SEQ ID NO: 6031
tggggggcagacaccgcgg
3299
3318
SEQ ID NO: 6577
ccgccttatcgtattccca
8083
8102
1
3


 


SEQ ID NO: 6032
ggggggcagacaccgcggc
3300
3319
SEQ ID NO: 6578
gccgcccaactcgctcccc
5792
5811
1
3


 


SEQ ID NO: 6033
gtggggacatcatcctggg
3321
3340
SEQ ID NO: 6579
cccatctacacgctcccac
4020
4039
1
3


 


SEQ ID NO: 6034
tggggacatcatcctgggc
3322
3341
SEQ ID NO: 6580
gcccatctacacgctccca
4019
4038
1
3


 


SEQ ID NO: 6035
ggggacatcatcctgggcc
3323
3342
SEQ ID NO: 6581
ggccagggggtctcccccc
6913
6932
1
3


 


SEQ ID NO: 6036
acctgtctccgcccgaagg
3343
3362
SEQ ID NO: 6582
cctttgacagactgcaggt
7770
7789
1
3


 


SEQ ID NO: 6037
tgtctccgcccgaagggga
3346
3365
SEQ ID NO: 6583
tccccggtcttcacagaca
3962
3981
1
3


 


SEQ ID NO: 6038
gggagatactcctggggcc
3366
3385
SEQ ID NO: 6584
ggcccatctacacgctccc
4018
4037
1
3


 


SEQ ID NO: 6039
ctcccaacagacccggggc
3439
3458
SEQ ID NO: 6585
gcccccccttgagggggag
7519
7538
1
3


 


SEQ ID NO: 6040
tccaccgcaacacaatctt
3530
3549
SEQ ID NO: 6586
aagaggctccaccagtgga
6215
6234
1
3


 


SEQ ID NO: 6041
cacaatctttcctggcgac
3540
3559
SEQ ID NO: 6587
gtcgtcggagtcgtgtgtg
6020
6039
1
3


 


SEQ ID NO: 6042
ggctggccggcgccccccg
3671
3690
SEQ ID NO: 6588
cgggttgttgcaaacagcc
5542
5561
1
3


 


SEQ ID NO: 6043
ccccggggcgcgttccctg
3685
3704
SEQ ID NO: 6589
caggtttgtaactccgggg
4840
4859
1
3


 


SEQ ID NO: 6044
tccctgacaccatgcacct
3698
3717
SEQ ID NO: 6590
aggtcacgcgggtggggga
6618
6637
1
3


 


SEQ ID NO: 6045
ttccggtgcgccggcgggg
3762
3781
SEQ ID NO: 6591
ccccgttgagtccatggaa
3931
3950
1
3


 


SEQ ID NO: 6046
ctcccccaggcctgtctcc
3802
3821
SEQ ID NO: 6592
ggagacatcgggccaggag
9111
9130
1
3


 


SEQ ID NO: 6047
gggggttgcaaaggcggtg
3904
3923
SEQ ID NO: 6593
caccctgcctgggaacccc
5680
5699
1
3


 


SEQ ID NO: 6048
tttgtccccgttgagtcca
3926
3945
SEQ ID NO: 6594
tggagaccttctgggcaaa
5613
5632
1
3


 


SEQ ID NO: 6049
ccgtaccgcaaacattcca
3996
4015
SEQ ID NO: 6595
tggattgccaaatctacgg
8940
8959
1
3


 


SEQ ID NO: 6050
caagtggcccatctacacg
4013
4032
SEQ ID NO: 6596
cgtgggtaggatcatcttg
5389
5408
1
3


 


SEQ ID NO: 6051
cacgctcccactggcagcg
4028
4047
SEQ ID NO: 6597
cgctgcttcggctttcgtg
5815
5834
1
3


 


SEQ ID NO: 6052
ccgcatatgcggcccaagg
4068
4087
SEQ ID NO: 6598
ccttcaaggtcatgagcgg
5937
5956
1
3


 


SEQ ID NO: 6053
cgtatatgtctaaagcaca
4140
4159
SEQ ID NO: 6599
tgtggaagtgtctcatacg
5163
5182
1
3


 


SEQ ID NO: 6054
gtatatgtctaaagcacat
4141
4160
SEQ ID NO: 6600
atgtggaagtgtctcatac
5162
5181
1
3


 


SEQ ID NO: 6055
ggaccattaccacgggcgc
4191
4210
SEQ ID NO: 6601
gcgcgtgtcactcaggtcc
6167
6186
1
3


 


SEQ ID NO: 6056
cccccattacgtactccac
4209
4228
SEQ ID NO: 6602
gtgggcccgggagaggggg
6059
6078
1
3


 


SEQ ID NO: 6057
agttccttgccgacggtgg
4236
4255
SEQ ID NO: 6603
ccacagtcaaggctaaact
7839
7858
1
3


 


SEQ ID NO: 6058
gagacggctggagcgcggc
4352
4371
SEQ ID NO: 6604
gccgggggaccccgatctc
7537
7556
1
3


 


SEQ ID NO: 6059
caccgctacgcctccagga
4384
4403
SEQ ID NO: 6605
tcctacacatggacaggtg
7619
7638
1
3


 


SEQ ID NO: 6060
tggagagatccccttctac
4453
4472
SEQ ID NO: 6606
gtagcagtgctcacttcca
6845
6864
1
3


 


SEQ ID NO: 6061
agccatccccatcgaagcc
4477
4496
SEQ ID NO: 6607
ggctggttcgttgctggct
9257
9276
1
3


 


SEQ ID NO: 6062
tccccatcgaagccatcaa
4482
4501
SEQ ID NO: 6608
ttgagggggagccggggga
7527
7546
1
3


 


SEQ ID NO: 6063
ccccatcgaagccatcaag
4483
4502
SEQ ID NO: 6609
cttgagggggagccggggg
7526
7545
1
3


 


SEQ ID NO: 6064
ggcctcggaatcaatgctg
4568
4587
SEQ ID NO: 6610
cagctccgaattgtcggcc
7414
7433
1
3


 


SEQ ID NO: 6065
gtccgtcataccgaccagc
4612
4631
SEQ ID NO: 6611
gctgagggatgtttgggac
6271
6290
1
3


 


SEQ ID NO: 6066
gtcataccgaccagcggag
4616
4635
SEQ ID NO: 6612
ctccattgagccacttgac
8968
8987
1
3


 


SEQ ID NO: 6067
cgggctataccggtgactt
4668
4687
SEQ ID NO: 6613
aagtccaagaagttccccg
7184
7203
1
3


 


SEQ ID NO: 6068
ctttgattcagtgatcgac
4684
4703
SEQ ID NO: 6614
gtcgagttcctggtaaaag
8213
8232
1
3


 


SEQ ID NO: 6069
acagtcgacttcagcttgg
4724
4743
SEQ ID NO: 6615
ccaaatctacggggcctgt
8947
8966
1
3


 


SEQ ID NO: 6070
cttggaccccaccttcacc
4738
4757
SEQ ID NO: 6616
ggtgttgagtgacttcaag
6301
6320
1
3


 


SEQ ID NO: 6071
gagacgacgaccgtgcccc
4760
4779
SEQ ID NO: 6617
ggggacaaccgatcgtctc
1891
1910
1
3


 


SEQ ID NO: 6072
ggggtaggactggcagggg
4806
4825
SEQ ID NO: 6618
ccccccggggacttgcccc
8657
8676
1
3


 


SEQ ID NO: 6073
gggcatatacaggtttgta
4831
4850
SEQ ID NO: 6619
tacacatggacaggtgccc
7622
7641
1
3


 


SEQ ID NO: 6074
gggggaacggccctcgggc
4855
4874
SEQ ID NO: 6620
gcccctgcacgccttcccc
6546
6565
1
3


 


SEQ ID NO: 6075
tgacgcgggctgtgcttgg
4906
4925
SEQ ID NO: 6621
ccaattgacaccaccgtca
8009
8028
1
3


 


SEQ ID NO: 6076
gacgcgggctgtgcttggt
4907
4926
SEQ ID NO: 6622
accaattgacaccaccgtc
8008
8027
1
3


 


SEQ ID NO: 6077
tgcttggtacgagctcacc
4918
4937
SEQ ID NO: 6623
ggtgcggctgttggcagca
5849
5868
1
3


 


SEQ ID NO: 6078
tgcccacttcctgtcccag
5050
5069
SEQ ID NO: 6624
ctgggcgcgctgacgggca
3164
3183
1
3


 


SEQ ID NO: 6079
ggtggcataccaagccaca
5101
5120
SEQ ID NO: 6625
tgtgacaccaattgacacc
8002
8021
1
3


 


SEQ ID NO: 6080
gggctcaggccccacctcc
5130
5149
SEQ ID NO: 6626
ggaggccgcaagccagccc
8066
8085
1
3


 


SEQ ID NO: 6081
ccatcgtgggatcaaatgt
5147
5166
SEQ ID NO: 6627
acattctggcgggctatgg
5892
5911
1
3


 


SEQ ID NO: 6082
tcatacggctaaaacccac
5175
5194
SEQ ID NO: 6628
gtggccttcaaggtcatga
5933
5952
1
3


 


SEQ ID NO: 6083
tgctgtataggctaggggc
5214
5233
SEQ ID NO: 6629
gcccgaaccggacgtagca
6832
6851
1
3


 


SEQ ID NO: 6084
ccaaatacatcatggcatg
5268
5287
SEQ ID NO: 6630
catgcctcaggaaacttgg
9072
9091
1
3


 


SEQ ID NO: 6085
ggagtcctcgcagctctgg
5336
5355
SEQ ID NO: 6631
ccagctgtctgcgccctcc
6955
6974
1
3


 


SEQ ID NO: 6086
gcctgacaacaggcagtgt
5364
5383
SEQ ID NO: 6632
acactccaggccaataggc
9401
9420
1
3


 


SEQ ID NO: 6087
agccaccaagcaggcggag
5557
5576
SEQ ID NO: 6633
ctccagttaactcctggct
8820
8839
1
3


 


SEQ ID NO: 6088
catgtggaatttcatcagc
5635
5654
SEQ ID NO: 6634
gctgcgccatcacaacatg
7702
7721
1
3


 


SEQ ID NO: 6089
ctctatcaccagcccgctc
5728
5747
SEQ ID NO: 6635
gagccgcatgactgcagag
9565
9584
1
3


 


SEQ ID NO: 6090
cccagaacaccctcctgtt
5751
5770
SEQ ID NO: 6636
aacatcttgggggggtggg
5771
5790
1
3


 


SEQ ID NO: 6091
ctcctgtttaacatcttgg
5762
5781
SEQ ID NO: 6637
ccaatcgatgaacggggag
9378
9397
1
3


 


SEQ ID NO: 6092
ttgggggggtgggtagccg
5777
5796
SEQ ID NO: 6638
cggcgccaaactattccaa
6564
6583
1
3


 


SEQ ID NO: 6093
tgcttcggctttcgtgggc
5818
5837
SEQ ID NO: 6639
gcccgaaccggacgtagca
6832
6851
1
3


 


SEQ ID NO: 6094
tcgtgggcgctggtatcgc
5829
5848
SEQ ID NO: 6640
gcgagcggcgtgctgacga
8453
8472
1
3


 


SEQ ID NO: 6095
cgctggtgcggctgttggc
5845
5864
SEQ ID NO: 6641
gccacgacatcccgcagcg
7727
7746
1
3


 


SEQ ID NO: 6096
cggctgttggcagcatagg
5853
5872
SEQ ID NO: 6642
cctagactctttcgagccg
7111
7130
1
3


 


SEQ ID NO: 6097
ggggcaggggtggctggcg
5909
5928
SEQ ID NO: 6643
cgcccaactcgctcccccc
5794
5813
1
3


 


SEQ ID NO: 6098
ctggcgcgctcgtggcctt
5922
5941
SEQ ID NO: 6644
aagggaggccgcaagccag
8063
8082
1
3


 


SEQ ID NO: 6099
tggcgcgctcgtggccttc
5923
5942
SEQ ID NO: 6645
gaagggaggccgcaagcca
8062
8081
1
3


 


SEQ ID NO: 6100
gagcggcgaggcgccctct
5950
5969
SEQ ID NO: 6646
agagcgtcgtctgctgctc
7596
7615
1
3


 


SEQ ID NO: 6101
tgggcccgggagagggggc
6060
6079
SEQ ID NO: 6647
gcccatctacacgctccca
4019
4038
1
3


 


SEQ ID NO: 6102
cggctgatagcgttcgctt
6095
6114
SEQ ID NO: 6648
aagcaggcggaggctgccg
5564
5583
1
3


 


SEQ ID NO: 6103
gtgcctgagagcgacgccg
6146
6165
SEQ ID NO: 6649
cggccgccgacagcggcac
7428
7447
1
3


 


SEQ ID NO: 6104
atgaggactgttctacgcc
6237
6256
SEQ ID NO: 6650
ggcggggggacggcatcat
6399
6418
1
3


 


SEQ ID NO: 6105
gtccaagctcctgccgcgg
6331
6350
SEQ ID NO: 6651
ccgctccgtgtgggaggac
7969
7988
1
3


 


SEQ ID NO: 6106
acagatcgccggacatgtc
6442
6461
SEQ ID NO: 6652
gacatatatcacagcctgt
9287
9306
1
3


 


SEQ ID NO: 6107
acgtggcatggaacattcc
6506
6525
SEQ ID NO: 6653
ggaagaacccggactacgt
7257
7276
1
3


 


SEQ ID NO: 6108
gggcccctgcacgccttcc
6544
6563
SEQ ID NO: 6654
ggaagaaagcaagctgccc
7660
7679
1
3


 


SEQ ID NO: 6109
agtgcccatgtcaggttcc
6675
6694
SEQ ID NO: 6655
ggaaacagctagacacact
8803
8822
1
3


 


SEQ ID NO: 6110
tgcccatgtcaggttccag
6677
6696
SEQ ID NO: 6656
ctgggcgcgctgacgggca
3164
3183
1
3


 


SEQ ID NO: 6111
cagctcctgagtttttcac
6693
6712
SEQ ID NO: 6657
gtgagagcgtcgtctgctg
7593
7612
1
3


 


SEQ ID NO: 6112
tcacggaggtggatggggt
6708
6727
SEQ ID NO: 6658
acccttcctcaagccgtga
8153
8172
1
3


 


SEQ ID NO: 6113
cacggaggtggatggggtg
6709
6728
SEQ ID NO: 6659
cacccttcctcaagccgtg
8152
8171
1
3


 


SEQ ID NO: 6114
gacccctcccacattacag
6872
6891
SEQ ID NO: 6660
ctgttttgactcaacggtc
8278
8297
1
3


 


SEQ ID NO: 6115
ttggccagggggtctcccc
6911
6930
SEQ ID NO: 6661
ggggtgggtagccgcccaa
5782
5801
1
3


 


SEQ ID NO: 6116
ccttgagggcgacatgcac
6972
6991
SEQ ID NO: 6662
gtgcttaaggagatgaagg
7811
7830
1
3


 


SEQ ID NO: 6117
ggagatgggcggaaacatc
7060
7079
SEQ ID NO: 6663
gatgacccatttcttctcc
8887
8906
1
3


 


SEQ ID NO: 6118
gagatgggcggaaacatca
7061
7080
SEQ ID NO: 6664
tgatgacccatttcttctc
8886
8905
1
3


 


SEQ ID NO: 6119
ctagactctttcgagccgc
7112
7131
SEQ ID NO: 6665
gcggcgtgctgacgactag
8457
8476
1
3


 


SEQ ID NO: 6120
tagactctttcgagccgct
7113
7132
SEQ ID NO: 6666
agcgacgggtcttggtcta
7556
7575
1
3


 


SEQ ID NO: 6121
agaatgaaatatccattgc
7149
7168
SEQ ID NO: 6667
gcaaagaatgaggttttct
8030
8049
1
3


 


SEQ ID NO: 6122
ttgcggcggagatcctgcg
7164
7183
SEQ ID NO: 6668
cgcacgatgcatctggcaa
8730
8749
1
3


 


SEQ ID NO: 6123
agcgaggaggctggtgaga
7580
7599
SEQ ID NO: 6669
tctcgtgcccgaccccgct
9305
9324
1
3


 


SEQ ID NO: 6124
tgagagcgtcgtctgctgc
7594
7613
SEQ ID NO: 6670
gcagtaaagaccaagctca
9197
9216
1
3


 


SEQ ID NO: 6125
gtcgtctgctgctcaatgt
7601
7620
SEQ ID NO: 6671
acatggtctacgccacgac
7716
7735
1
3


 


SEQ ID NO: 6126
tgcgccatcacaacatggt
7704
7723
SEQ ID NO: 6672
accatgtctcccccacgca
6123
6142
1
3


 


SEQ ID NO: 6127
cagaagaaggtcacctttg
7757
7776
SEQ ID NO: 6673
caaagaatgaggttttctg
8031
8050
1
3


 


SEQ ID NO: 6128
cctggatgaccattaccgg
7789
7808
SEQ ID NO: 6674
ccggaacctatccagcagg
7936
7955
1
3


 


SEQ ID NO: 6129
ggacgtgcttaaggagatg
7807
7826
SEQ ID NO: 6675
catcgggccaggagcgtcc
9116
9135
1
3


 


SEQ ID NO: 6130
aaagaatgaggttttctgc
8032
8051
SEQ ID NO: 6676
gcagaagaaggtcaccttt
7756
7775
1
3


 


SEQ ID NO: 6131
agttcgtgtatgcgagaag
8110
8129
SEQ ID NO: 6677
cttcatgcctcaggaaact
9069
9088
1
3


 


SEQ ID NO: 6132
ggctataaaatcgctcaca
8365
8384
SEQ ID NO: 6678
tgtgaaaggtccgtgagcc
9551
9570
1
3


 


SEQ ID NO: 6133
ttctccatccttctagctc
8900
8919
SEQ ID NO: 6679
gagcggagggggatgagaa
7134
7153
1
3


 


SEQ ID NO: 6134
tgtctcgtgcccgaccccg
9303
9322
SEQ ID NO: 6680
cggggcgcgttccctgaca
3688
3707
1
3
















TABLE 14







Sequences from human hepatitis C virus (HCV) (Direct Match Type)

















Start
End


Start
End




Source
Index
Index

Match
Index
Index
Match #



















SEQ ID NO: 4088
ttttttttttttttttttt
9446
9465
SEQ ID NO: 4661
ttttttttttttttttttt
9466
9485
2


SEQ ID NO: 4347
ttttttttttttttttttt
9446
9465
SEQ ID NO: 5229
ttttttttttttttttttt
9465
9484
1


SEQ ID NO: 4348
ttttttttttttttttttt
9447
9466
SEQ ID NO: 5230
ttttttttttttttttttt
9466
9485
1
















TABLE 15





Sequences of Exemplary Gene Targets















gi|4502152|ref|NM_000384.1|Homo sapiens apolipoprotein B (including Ag(x)


antigen) (APOB), mRNA


ATTCCCACCGGGACCTGCGGGGCTGAGTGCCCTTCTCGGTTGCTGCCGCTGAGGAGCCCGCCCAGCCAGC


CAGGGCCGCGAGGCCGAGGCCAGGCCGCAGCCCAGGAGCCGCCCCACCGCAGCTGGCGATGGACCCGCCG


AGGCCCGCGCTGCTGGCGCTGCTGGCGCTGCCTGCGCTGCTGCTGCTGCTGCTGGCGGGCGCCAGGGCCG


AAGAGGAAATGCTGGAAAATGTCAGCCTGGTCTGTCCAAAAGATGCGACCCGATTCAAGCACCTCCGGAA


GTACACATACAACTATGAGGCTGAGAGTTCCAGTGGAGTCCCTGGGACTGCTGATTCAAGAAGTGCCACC


AGGATCAACTGCAAGGTTGAGCTGGAGGTTCCCCAGCTCTGCAGCTTCATCCTGAAGACCAGCCAGTGCA


CCCTGAAAGAGGTGTATGGCTTCAACCCTGAGGGCAAAGCCTTGCTGAAGAAAACCAAGAACTCTGAGGA


GTTTGCTGCAGCCATGTCCAGGTATGAGCTCAAGCTGGCCATTCCAGAAGGGAAGCAGGTTTTCCTTTAC


CCGGAGAAAGATGAACCTACTTACATCCTGAACATCAAGAGGGGCATCATTTCTGCCCTCCTGGTTCCCC


CAGAGACAGAAGAAGCCAAGCAAGTGTTGTTTCTGGATACCGTGTATGGAAACTGCTCCACTCACTTTAC


CGTCAAGACGAGGAAGGGCAATGTGGCAACAGAAATATCCACTGAAAGAGACCTGGGGCAGTGTGATCGC


TTCAAGCCCATCCGCACAGGCATCAGCCCACTTGCTCTCATCAAAGGCATGACCCGCCCCTTGTCAACTC


TGATCAGCAGCAGCCAGTCCTGTCAGTACACACTGGACGCTAAGAGGAAGCATGTGGCAGAAGCCATCTG


CAAGGAGCAACACCTCTTCCTGCCTTTCTCCTACAACAATAAGTATGGGATGGTAGCACAAGTGACACAG


ACTTTGAAACTTGAAGACACACCAAAGATCAACAGCCGCTTCTTTGGTGAAGGTACTAAGAAGATGGGCC


TCGCATTTGAGAGCACCAAATCCACATCACCTCCAAAGCAGGCCGAAGCTGTTTTGAAGACTCTCCAGGA


ACTGAAAAAACTAACCATCTCTGAGCAAAATATCCAGAGAGCTAATCTCTTCAATAAGCTGGTTACTGAG


CTGAGAGGCCTCAGTGATGAAGCAGTCACATCTCTCTTGCCACAGCTGATTGAGGTGTCCAGCCCCATCA


CTTTACAAGCCTTGGTTCAGTGTGGACAGCCTCAGTGCTCCACTCACATCCTCCAGTGGCTGAAACGTGT


GCATGCCAACCCCCTTCTGATAGATGTGGTCACCTACCTGGTGGCCCTGATCCCCGAGCCCTCAGCACAG


CAGCTGCGAGAGATCTTCAACATGGCGAGGGATCAGCGCAGCCGAGCCACCTTGTATGCGCTGAGCCACG


CGGTCAACAACTATCATAAGACAAACCCTACAGGGACCCAGGAGCTGCTGGACATTGCTAATTACCTGAT


GGAACAGATTCAAGATGACTGCACTGGGGATGAAGATTACACCTATTTGATTCTGCGGGTCATTGGAAAT


ATGGGCCAAACCATGGAGCAGTTAACTCCAGAACTCAAGTCTTCAATCCTCAAATGTGTCCAAAGTACAA


AGCCATCACTGATGATCCAGAAAGCTGCCATCCAGGCTCTGCGGAAAATGGAGCCTAAAGACAAGGACCA


GGAGGTTCTTCTTCAGACTTTCCTTGATGATGCTTCTCCGGGAGATAAGCGACTGGCTGCCTATCTTATG


TTGATGAGGAGTCCTTCACAGGCAGATATTAACAAAATTGTCCAAATTCTACCATGGGAACAGAATGAGC


AAGTGAAGAACTTTGTGGCTTCCCATATTGCCAATATCTTGAACTCAGAAGAATTGGATATCCAAGATCT


GAAAAAGTTAGTGAAAGAAGCTCTGAAAGAATCTCAACTTCCAACTGTCATGGACTTCAGAAAATTCTCT


CGGAACTATCAACTCTACAAATCTGTTTCTCTTCCATCACTTGACCCAGCCTCAGCCAAAATAGAAGGGA


ATCTTATATTTGATCCAAATAACTACCTTCCTAAAGAAAGCATGCTGAAAACTACCCTCACTGCCTTTGG


ATTTGCTTCAGCTGACCTCATCGAGATTGGCTTGGAAGGAAAAGGCTTTGAGCCAACATTGGAAGCTCTT


TTTGGGAAGCAAGGATTTTTCCCAGACAGTGTCAACAAAGCTTTGTACTGGGTTAATGGTCAAGTTCCTG


ATGGTGTCTCTAAGGTCTTAGTGGACCACTTTGGCTATACCAAAGATGATAAACATGAGCAGGATATGGT


AAATGGAATAATGCTCAGTGTTGAGAAGCTGATTAAAGATTTGAAATCCAAAGAAGTCCCGGAAGCCAGA


GCCTACCTCCGCATCTTGGGAGAGGAGCTTGGTTTTGCCAGTCTCCATGACCTCCAGCTCCTGGGAAAGC


TGCTTCTGATGGGTGCCCGCACTCTGCAGGGGATCCCCCAGATGATTGGAGAGGTCATCAGGAAGGGCTC


AAAGAATGACTTTTTTCTTCACTACATCTTCATGGAGAATGCCTTTGAACTCCCCACTGGAGCTGGATTA


CAGTTGCAAATATCTTCATCTGGAGTCATTGCTCCCGGAGCCAAGGCTGGAGTAAAACTGGAAGTAGCCA


ACATGCAGGCTGAACTGGTGGCAAAACCCTCCGTGTCTGTGGAGTTTGTGACAAATATGGGCATCATCAT


TCCGGACTTCGCTAGGAGTGGGGTCCAGATGAACACCAACTTCTTCCACGAGTCGGGTCTGGAGGCTCAT


GTTGCCCTAAAAGCTGGGAAGCTGAAGTTTATCATTCCTTCCCCAAAGAGACCAGTCAAGCTGCTCAGTG


GAGGCAACACATTACATTTGGTCTCTACCACCAAAACGGAGGTGATCCCACCTCTCATTGAGAACAGGCA


GTCCTGGTCAGTTTGCAAGCAAGTCTTTCCTGGCCTGAATTACTGCACCTCAGGCGCTTACTCCAACGCC


AGCTCCACAGACTCCGCCTCCTACTATCCGCTGACCGGGGACACCAGATTAGAGCTGGAACTGAGGCCTA


CAGGAGAGATTGAGCAGTATTCTGTCAGCGCAACCTATGAGCTCCAGAGAGAGGACAGAGCCTTGGTGGA


TACCCTGAAGTTTGTAACTCAAGCAGAAGGTGCGAAGCAGACTGAGGCTACCATGACATTCAAATATAAT


CGGCAGAGTATGACCTTGTCCAGTGAAGTCCAAATTCCGGATTTTGATGTTGACCTCGGAACAATCCTCA


GAGTTAATGATGAATCTACTGAGGGCAAAACGTCTTACAGACTCACCCTGGACATTCAGAACAAGAAAAT


TACTGAGGTCGCCCTCATGGGCCACCTAAGTTGTGACACAAAGGAAGAAAGAAAAATCAAGGGTGTTATT


TCCATACCCCGTTTGCAAGCAGAAGCCAGAAGTGAGATCCTCGCCCACTGGTCGCCTGCCAAACTGCTTC


TCCAAATGGACTCATCTGCTACAGCTTATGGCTCCACAGTTTCCAAGAGGGTGGCATGGCATTATGATGA


AGAGAAGATTGAATTTGAATGGAACACAGGCACCAATGTAGATACCAAAAAAATGACTTCCAATTTCCCT


GTGGATCTCTCCGATTATCCTAAGAGCTTGCATATGTATGCTAATAGACTCCTGGATCACAGAGTCCCTG


AAACAGACATGACTTTCCGGCACGTGGGTTCCAAATTAATAGTTGCAATGAGCTCATGGCTTCAGAAGGC


ATCTGGGAGTCTTCCTTATACCCAGACTTTGCAAGACCACCTCAATAGCCTGAAGGAGTTCAACCTCCAG


AACATGGGATTGCCAGACTTCCACATCCCAGAAAACCTCTTCTTAAAAAGCGATGGCCGGGTCAAATATA


CCTTGAACAAGAACAGTTTGAAAATTGAGATTCCTTTGCCTTTTGGTGGCAAATCCTCCAGAGATCTAAA


GATGTTAGAGACTGTTAGGACACCAGCCCTCCACTTCAAGTCTGTGGGATTCCATCTGCCATCTCGAGAG


TTCCAAGTCCCTACTTTTACCATTCCCAAGTTGTATCAACTGCAAGTGCCTCTCCTGGGTGTTCTAGACC


TCTCCACGAATGTCTACAGCAACTTGTACAACTGGTCCGCCTCCTACAGTGGTGGCAACACCAGCACAGA


CCATTTCAGCCTTCGGGCTCGTTACCACATGAAGGCTGACTCTGTGGTTGACCTGCTTTCCTACAATGTG


CAAGGATCTGGAGAAACAACATATGACCACAAGAATACGTTCACACTATCATGTGATGGGTCTCTACGCC


ACAAATTTCTAGATTCGAATATCAAATTCAGTCATGTAGAAAAACTTGGAAACAACCCAGTCTCAAAAGG


TTTACTAATATTCGATGCATCTAGTTCCTGGGGACCACAGATGTCTGCTTCAGTTCATTTGGACTCCAAA


AAGAAACAGCATTTGTTTGTCAAAGAAGTCAAGATTGATGGGCAGTTCAGAGTCTCTTCGTTCTATGCTA


AAGGCACATATGGCCTGTCTTGTCAGAGGGATCCTAACACTGGCCGGCTCAATGGAGAGTCCAACCTGAG


GTTTAACTCCTCCTACCTCCAAGGCACCAACCAGATAACAGGAAGATATGAAGATGGAACCCTCTCCCTC


ACCTCCACCTCTGATCTGCAAAGTGGCATCATTAAAAATACTGCTTCCCTAAAGTATGAGAACTACGAGC


TGACTTTAAAATCTGACACCAATGGGAAGTATAAGAACTTTGCCACTTCTAACAAGATGGATATGACCTT


CTCTAAGCAAAATGCACTGCTGCGTTCTGAATATCAGGCTGATTACGAGTCATTGAGGTTCTTCAGCCTG


CTTTCTGGATCACTAAATTCCCATGGTCTTGAGTTAAATGCTGACATCTTAGGCACTGACAAAATTAATA


GTGGTGCTCACAAGGCGACACTAAGGATTGGCCAAGATGGAATATCTACCAGTGCAACGACCAACTTGAA


GTGTAGTCTCCTGGTGCTGGAGAATGAGCTGAATGCAGAGCTTGGCCTCTCTGGGGCATCTATGAAATTA


ACAACAAATGGCCGCTTCAGGGAACACAATGCAAAATTCAGTCTGGATGGGAAAGCCGCCCTCACAGAGC


TATCACTGGGAAGTGCTTATCAGGCCATGATTCTGGGTGTCGACAGCAAAAACATTTTCAACTTCAAGGT


CAGTCAAGAAGGACTTAAGCTCTCAAATGACATGATGGGCTCATATGCTGAAATGAAATTTGACCACACA


AACAGTCTGAACATTGCAGGCTTATCACTGGACTTCTCTTCAAAACTTGACAACATTTACAGCTCTGACA


AGTTTTATAAGCAAACTGTTAATTTACAGCTACAGCCCTATTCTCTGGTAACTACTTTAAACAGTGACCT


GAAATACAATGCTCTGGATCTCACCAACAATGGGAAACTACGGCTAGAACCCCTGAAGCTGCATGTGGCT


GGTAACCTAAAAGGAGCCTACCAAAATAATGAAATAAAACACATCTATGCCATCTCTTCTGCTGCCTTAT


CAGCAAGCTATAAAGCAGACACTGTTGCTAAGGTTCAGGGTGTGGAGTTTAGCCATCGGCTCAACACAGA


CATCGCTGGGCTGGCTTCAGCCATTGACATGAGCACAAACTATAATTCAGACTCACTGCATTTCAGCAAT


GTCTTCCGTTCTGTAATGGCCCCGTTTACCATGACCATCGATGCACATACAAATGGCAATGGGAAACTCG


CTCTCTGGGGAGAACATACTGGGCAGCTGTATAGCAAATTCCTGTTGAAAGCAGAACCTCTGGCATTTAC


TTTCTCTCATGATTACAAAGGCTCCACAAGTCATCATCTCGTGTCTAGGAAAAGCATCAGTGCAGCTCTT


GAACACAAAGTCAGTGCCCTGCTTACTCCAGCTGAGCAGACAGGCACCTGGAAACTCAAGACCCAATTTA


ACAACAATGAATACAGCCAGGACTTGGATGCTTACAACACTAAAGATAAAATTGGCGTGGAGCTTACTGG


ACGAACTCTGGCTGACCTAACTCTACTAGACTCCCCAATTAAAGTGCCACTTTTACTCAGTGAGCCCATC


AATATCATTGATGCTTTAGAGATGAGAGATGCCGTTGAGAAGCCCCAAGAATTTACAATTGTTGCTTTTG


TAAAGTATGATAAAAACCAAGATGTTCACTCCATTAACCTCCCATTTTTTGAGACCTTGCAAGAATATTT


TGAGAGGAATCGACAAACCATTATAGTTGTAGTGGAAAACGTACAGAGAAACCTGAAGCACATCAATATT


GATCAATTTGTAAGAAAATACAGAGCAGCCCTGGGAAAACTCCCACAGCAAGCTAATGATTATCTGAATT


CATTCAATTGGGAGAGACAAGTTTCACATGCCAAGGAGAAACTGACTGCTCTCACAAAAAAGTATAGAAT


TACAGAAAATGATATACAAATTGCATTAGATGATGCCAAAATCAACTTTAATGAAAAACTATCTCAACTG


CAGACATATATGATACAATTTGATCAGTATATTAAAGATAGTTATGATTTACATGATTTGAAAATAGCTA


TTGCTAATATTATTGATGAAATCATTGAAAAATTAAAAAGTCTTGATGAGCACTATCATATCCGTGTAAA


TTTAGTAAAAACAATCCATGATCTACATTTGTTTATTGAAAATATTGATTTTAACAAAAGTGGAAGTAGT


ACTGCATCCTGGATTCAAAATGTGGATACTAAGTACCAAATCAGAATCCAGATACAAGAAAAACTGCAGC


AGCTTAAGAGACACATACAGAATATAGACATCCAGCACCTAGCTGGAAAGTTAAAACAACACATTGAGGC


TATTGATGTTAGAGTGCTTTTAGATCAATTGGGAACTACAATTTCATTTGAAAGAATAAATGATGTTCTT


GAGCATGTCAAACACTTTGTTATAAATCTTATTGGGGATTTTGAAGTAGCTGAGAAAATCAATGCCTTCA


GAGCCAAAGTCCATGAGTTAATCGAGAGGTATGAAGTAGACCAACAAATCCAGGTTTTAATGGATAAATT


AGTAGAGTTGACCCACCAATACAAGTTGAAGGAGACTATTCAGAAGCTAAGCAATGTCCTACAACAAGTT


AAGATAAAAGATTACTTTGAGAAATTGGTTGGATTTATTGATGATGCTGTGAAGAAGCTTAATGAATTAT


CTTTTAAAACATTCATTGAAGATGTTAACAAATTCCTTGACATGTTGATAAAGAAATTAAAGTCATTTGA


TTACCACCAGTTTGTAGATGAAACCAATGACAAAATCCGTGAGGTGACTCAGAGACTCAATGGTGAAATT


CAGGCTCTGGAACTACCACAAAAAGCTGAAGCATTAAAACTGTTTTTAGAGGAAACCAAGGCCACAGTTG


CAGTGTATCTGGAAAGCCTACAGGACACCAAAATAACCTTAATCATCAATTGGTTACAGGAGGCTTTAAG


TTCAGCATCTTTGGCTCACATGAAGGCCAAATTCCGAGAGACTCTAGAAGATACACGAGACCGAATGTAT


CAAATGGACATTCAGCAGGAACTTCAACGATACCTGTCTCTGGTAGGCCAGGTTTATAGCACACTTGTCA


CCTACATTTCTGATTGGTGGACTCTTGCTGCTAAGAACCTTACTGACTTTGCAGAGCAATATTCTATCCA


AGATTGGGCTAAACGTATGAAAGCATTGGTAGAGCAAGGGTTCACTGTTCCTGAAATCAAGACCATCCTT


GGGACCATGCCTGCCTTTGAAGTCAGTCTTCAGGCTCTTCAGAAAGCTACCTTCCAGACACCTGATTTTA


TAGTCCCCCTAACAGATTTGAGGATTCCATCAGTTCAGATAAACTTCAAAGACTTAAAAAATATAAAAAT


CCCATCCAGGTTTTCCACACCAGAATTTACCATCCTTAACACCTTCCACATTCCTTCCTTTACAATTGAC


TTTGTCGAAATGAAAGTAAAGATCATCAGAACCATTGACCAGATGCAGAACAGTGAGCTGCAGTGGCCCG


TTCCAGATATATATCTCAGGGATCTGAAGGTGGAGGACATTCCTCTAGCGAGAATCACCCTGCCAGACTT


CCGTTTACCAGAAATCGCAATTCCAGAATTCATAATCCCAACTCTCAACCTTAATGATTTTCAAGTTCCT


GACCTTCACATACCAGAATTCCAGCTTCCCCACATCTCACACACAATTGAAGTACCTACTTTTGGCAAGC


TATACAGTATTCTGAAAATCCAATCTCCTCTTTTCACATTAGATGCAAATGCTGACATAGGGAATGGAAC


CACCTCAGCAAACGAAGCAGGTATCGCAGCTTCCATCACTGCCAAAGGAGAGTCCAAATTAGAAGTTCTC


AATTTTGATTTTCAAGCAAATGCACAACTCTCAAACCCTAAGATTAATCCGCTGGCTCTGAAGGAGTCAG


TGAAGTTCTCCAGCAAGTACCTGAGAACGGAGCATGGGAGTGAAATGCTGTTTTTTGGAAATGCTATTGA


GGGAAAATCAAACACAGTGGCAAGTTTACACACAGAAAAAAATACACTGGAGCTTAGTAATGGAGTGATT


GTCAAGATAAACAATCAGCTTACCCTGGATAGCAACACTAAATACTTCCACAAATTGAACATCCCCAAAC


TGGACTTCTCTAGTCAGGCTGACCTGCGCAACGAGATCAAGACACTGTTGAAAGCTGGCCACATAGCATG


GACTTCTTCTGGAAAAGGGTCATGGAAATGGGCCTGCCCCAGATTCTCAGATGAGGGAACACATGAATCA


CAAATTAGTTTCACCATAGAAGGACCCCTCACTTCCTTTGGACTGTCCAATAAGATCAATAGCAAACACC


TAAGAGTAAACCAAAACTTGGTTTATGAATCTGGCTCCCTCAACTTTTCTAAACTTGAAATTCAATCACA


AGTCGATTCCCAGCATGTGGGCCACAGTGTTCTAACTGCTAAAGGCATGGCACTGTTTGGAGAAGGGAAG


GCAGAGTTTACTGGGAGGCATGATGCTCATTTAAATGGAAAGGTTATTGGAACTTTGAAAAATTCTCTTT


TCTTTTCAGCCCAGCCATTTGAGATCACGGCATCCACAAACAATGAAGGGAATTTGAAAGTTCGTTTTCC


ATTAAGGTTAACAGGGAAGATAGACTTCCTGAATAACTATGCACTGTTTCTGAGTCCCAGTGCCCAGCAA


GCAAGTTGGCAAGTAAGTGCTAGGTTCAATCAGTATAAGTACAACCAAAATTTCTCTGCTGGAAACAACG


AGAACATTATGGAGGCCCATGTAGGAATAAATGGAGAAGCAAATCTGGATTTCTTAAACATTCCTTTAAC


AATTCCTGAAATGCGTCTACCTTACACAATAATCACAACTCCTCCACTGAAAGATTTCTCTCTATGGGAA


AAAACAGGCTTGAAGGAATTCTTGAAAACGACAAAGCAATCATTTGATTTAAGTGTAAAAGCTCAGTATA


AGAAAAACAAACACAGGCATTCCATCACAAATCCTTTGGCTGTGCTTTGTGAGTTTATCAGTCAGAGCAT


CAAATCCTTTGACAGGCATTTTGAAAAAAACAGAAACAATGCATTAGATTTTGTCACCAAATCCTATAAT


GAAACAAAAATTAAGTTTGATAAGTACAAAGCTGAAAAATCTCACGACGAGCTCCCCAGGACCTTTCAAA


TTCCTGGATACACTGTTCCAGTTGTCAATGTTGAAGTGTCTCCATTCACCATAGAGATGTCGGCATTCGG


CTATGTGTTCCCAAAAGCAGTCAGCATGCCTAGTTTCTCCATCCTAGGTTCTGACGTCCGTGTGCCTTCA


TACACATTAATCCTGCCATCATTAGAGCTGCCAGTCCTTCATGTCCCTAGAAATCTCAAGCTTTCTCTTC


CACATTTCAAGGAATTGTGTACCATAAGCCATATTTTTATTCCTGCCATGGGCAATATTACCTATGATTT


CTCCTTTAAATCAAGTGTCATCACACTGAATACCAATGCTGAACTTTTTAACCAGTCAGATATTGTTGCT


CATCTCCTTTCTTCATCTTCATCTGTCATTGATGCACTGCAGTACAAATTAGAGGGCACCACAAGATTGA


CAAGAAAAAGGGGATTGAAGTTAGCCACAGCTCTGTCTCTGAGCAACAAATTTGTGGAGGGTAGTCATAA


CAGTACTGTGAGCTTAACCACGAAAAATATGGAAGTGTCAGTGGCAAAAACCACAAAAGCCGAAATTCCA


ATTTTGAGAATGAATTTCAAGCAAGAACTTAATGGAAATACCAAGTCAAAACCTACTGTCTCTTCCTCCA


TGGAATTTAAGTATGATTTCAATTCTTCAATGCTGTACTCTACCGCTAAAGGAGCAGTTGACCACAAGCT


TAGCTTGGAAAGCCTCACCTCTTACTTTTCCATTGAGTCATCTACCAAAGGAGATGTCAAGGGTTCGGTT


CTTTCTCGGGAATATTCAGGAACTATTGCTAGTGAGGCCAACACTTACTTGAATTCCAAGAGCACACGGT


CTTCAGTGAAGCTGCAGGGCACTTCCAAAATTGATGATATCTGGAACCTTGAAGTAAAAGAAAATTTTGC


TGGAGAAGCCACACTCCAACGCATATATTCCCTCTGGGAGCACAGTACGAAAAACCACTTACAGCTAGAG


GGCCTCTTTTTCACCAACGGAGAACATACAAGCAAAGCCACCCTGGAACTCTCTCCATGGCAAATGTCAG


CTCTTGTTCAGGTCCATGCAAGTCAGCCCAGTTCCTTCCATGATTTCCCTGACCTTGGCCAGGAAGTGGC


CCTGAATGCTAACACTAAGAACCAGAAGATCAGATGGAAAAATGAAGTCCGGATTCATTCTGGGTCTTTC


CAGAGCCAGGTCGAGCTTTCCAATGACCAAGAAAAGGCACACCTTGACATTGCAGGATCCTTAGAAGGAC


ACCTAAGGTTCCTCAAAAATATCATCCTACCAGTCTATGACAAGAGCTTATGGGATTTCCTAAAGCTGGA


TGTAACCACCAGCATTGGTAGGAGACAGCATCTTCGTGTTTCAACTGCCTTTGTGTACACCAAAAACCCC


AATGGCTATTCATTCTCCATCCCTGTAAAAGTTTTGGCTGATAAATTCATTACTCCTGGGCTGAAACTAA


ATGATCTAAATTCAGTTCTTGTCATGCCTACGTTCCATGTCCCATTTACAGATCTTCAGGTTCCATCGTG


CAAACTTGACTTCAGAGAAATACAAATCTATAAGAAGCTGAGAACTTCATCATTTGCCCTCAACCTACCA


ACACTCCCCGAGGTAAAATTCCCTGAAGTTGATGTGTTAACAAAATATTCTCAACCAGAAGACTCCTTGA


TTCCCTTTTTTGAGATAACCGTGCCTGAATCTCAGTTAACTGTGTCCCAGTTCACGCTTCCAAAAAGTGT


TTCAGATGGCATTGCTGCTTTGGATCTAAATGCAGTAGCCAACAAGATCGCAGACTTTGAGTTGCCCACC


ATCATCGTGCCTGAGCAGACCATTGAGATTCCCTCCATTAAGTTCTCTGTACCTGCTGGAATTGTCATTC


CTTCCTTTCAAGCACTGACTGCACGCTTTGAGGTAGACTCTCCCGTGTATAATGCCACTTGGAGTGCCAG


TTTGAAAAACAAAGCAGATTATGTTGAAACAGTCCTGGATTCCACATGCAGCTCAACCGTACAGTTCCTA


GAATATGAACTAAATGTTTTGGGAACACACAAAATCGAAGATGGTACGTTAGCCTCTAAGACTAAAGGAA


CACTTGCACACCGTGACTTCAGTGCAGAATATGAAGAAGATGGCAAATTTGAAGGACTTCAGGAATGGGA


AGGAAAAGCGCACCTCAATATCAAAAGCCCAGCGTTCACCGATCTCCATCTGCGCTACCAGAAAGACAAG


AAAGGCATCTCCACCTCAGCAGCCTCCCCAGCCGTAGGCACCGTGGGCATGGATATGGATGAAGATGACG


ACTTTTCTAAATGGAACTTCTACTACAGCCCTCAGTCCTCTCCAGATAAAAAACTCACCATATTCAAAAC


TGAGTTGAGGGTCCGGGAATCTGATGAGGAAACTCAGATCAAAGTTAATTGGGAAGAAGAGGCAGCTTCT


GGCTTGCTAACCTCTCTGAAAGACAACGTGCCCAAGGCCACAGGGGTCCTTTATGATTATGTCAACAAGT


ACCACTGGGAACACACAGGGCTCACCCTGAGAGAAGTGTCTTCAAAGCTGAGAAGAAATCTGCAGAACAA


TGCTGAGTGGGTTTATCAAGGGGCCATTAGGCAAATTGATGATATCGACGTGAGGTTCCAGAAAGCAGCC


AGTGGCACCACTGGGACCTACCAAGAGTGGAAGGACAAGGCCCAGAATCTGTACCAGGAACTGTTGACTC


AGGAAGGCCAAGCCAGTTTCCAGGGACTCAAGGATAACGTGTTTGATGGCTTGGTACGAGTTACTCAAAA


ATTCCATATGAAAGTCAAGCATCTGATTGACTCACTCATTGATTTTCTGAACTTCCCCAGATTCCAGTTT


CCGGGGAAACCTGGGATATACACTAGGGAGGAACTTTGCACTATGTTCATAAGGGAGGTAGGGACGGTAC


TGTCCCAGGTATATTCGAAAGTCCATAATGGTTCAGAAATACTGTTTTCCTATTTCCAAGACCTAGTGAT


TACACTTCCTTTCGAGTTAAGGAAACATAAACTAATAGATGTAATCTCGATGTATAGGGAACTGTTGAAA


GATTTATCAAAAGAAGCCCAAGAGGTATTTAAAGCCATTCAGTCTCTCAAGACCACAGAGGTGCTACGTA


ATCTTCAGGACCTTTTACAATTCATTTTCCAACTAATAGAAGATAACATTAAACAGCTGAAAGAGATGAA


ATTTACTTATCTTATTAATTATATCCAAGATGAGATCAACACAATCTTCAATGATTATATCCCATATGTT


TTTAAATTGTTGAAAGAAAACCTATGCCTTAATCTTCATAAGTTCAATGAATTTATTCAAAACGAGCTTC


AGGAAGCTTCTCAAGAGTTACAGCAGATCCATCAATACATTATGGCCCTTCGTGAAGAATATTTTGATCC


AAGTATAGTTGGCTGGACAGTGAAATATTATGAACTTGAAGAAAAGATAGTCAGTCTGATCAAGAACCTG


TTAGTTGCTCTTAAGGACTTCCATTCTGAATATATTGTCAGTGCCTCTAACTTTACTTCCCAACTCTCAA


GTCAAGTTGAGCAATTTCTGCACAGAAATATTCAGGAATATCTTAGCATCCTTACCGATCCAGATGGAAA


AGGGAAAGAGAAGATTGCAGAGCTTTCTGCCACTGCTCAGGAAATAATTAAAAGCCAGGCCATTGCGACG


AAGAAAATAATTTCTGATTACCACCAGCAGTTTAGATATAAACTGCAAGATTTTTCAGACCAACTCTCTG


ATTACTATGAAAAATTTATTGCTGAATCCAAAAGATTGATTGACCTGTCCATTCAAAACTACCACACATT


TCTGATATACATCACGGAGTTACTGAAAAAGCTGCAATCAACCACAGTCATGAACCCCTACATGAAGCTT


GCTCCAGGAGAACTTACTATCATCCTCTAATTTTTTAAAAGAAATCTTCATTTATTCTTCTTTTCCAATT


GAACTTTCACATAGCACAGAAAAAATTCAAACTGCCTATATTGATAAAACCATACAGTGAGCCAGCCTTG


CAGTAGGCAGTAGACTATAAGCAGAAGCACATATGAACTGGACCTGCACCAAAGCTGGCACCAGGGCTCG


GAAGGTCTCTGAACTCAGAAGGATGGCATTTTTTGCAAGTTAAAGAAAATCAGGATCTGAGTTATTTTGC


TAAACTTGGGGGAGGAGGAACAAATAAATGGAGTCTTTATTGTGTATCATA (SEQ ID NO: 6681)


 


>gi|4557442|ref|NM_000078.1|Homo sapiens cholesteryl ester transfer


protein, plasma (CETP), mRNA


GTGAATCTCTGGGGCCAGGAAGACCCTGCTGCCCGGAAGAGCCTCATGTTCCGTGGGGGCTGGGCGGACA


TACATATACGGGCTCCAGGCTGAACGGCTCGGGCCACTTACACACCACTGCCTGATAACCATGCTGGCTG


CCACAGTCCTGACCCTGGCCCTGCTGGGCAATGCCCATGCCTGCTCCAAAGGCACCTCGCACGAGGCAGG


CATCGTGTGCCGCATCACCAAGCCTGCCCTCCTGGTGTTGAACCACGAGACTGCCAAGGTGATCCAGACC


GCCTTCCAGCGAGCCAGCTACCCAGATATCACGGGCGAGAAGGCCATGATGCTCCTTGGCCAAGTCAAGT


ATGGGTTGCACAACATCCAGATCAGCCACTTGTCCATCGCCAGCAGCCAGGTGGAGCTGGTGGAAGCCAA


GTCCATTGATGTCTCCATTCAGAACGTGTCTGTGGTCTTCAAGGGGACCCTGAAGTATGGCTACACCACT


GCCTGGTGGCTGGGTATTGATCAGTCCATTGACTTCGAGATCGACTCTGCCATTGACCTCCAGATCAACA


CACAGCTGACCTGTGACTCTGGTAGAGTGCGGACCGATGCCCCTGACTGCTACCTGTCTTTCCATAAGCT


GCTCCTGCATCTCCAAGGGGAGCGAGAGCCTGGGTGGATCAAGCAGCTGTTCACAAATTTCATCTCCTTC


ACCCTGAAGCTGGTCCTGAAGGGACAGATCTGCAAAGAGATCAACGTCATCTCTAACATCATGGCCGATT


TTGTCCAGACAAGGGCTGCCAGCATCCTTTCAGATGGAGACATTGGGGTGGACATTTCCCTGACAGGTGA


TCCCGTCATCACAGCCTCCTACCTGGAGTCCCATCACAAGGGTCATTTCATCTACAAGAATGTCTCAGAG


GACCTCCCCCTCCCCACCTTCTCGCCCACACTGCTGGGGGACTCCCGCATGCTGTACTTCTGGTTCTCTG


AGCGAGTCTTCCACTCGCTGGCCAAGGTAGCTTTCCAGGATGGCCGCCTCATGCTCAGCCTGATGGGAGA


CGAGTTCAAGGCAGTGCTGGAGACCTGGGGCTTCAACACCAACCAGGAAATCTTCCAAGAGGTTGTCGGC


GGCTTCCCCAGCCAGGCCCAAGTCACCGTCCACTGCCTCAAGATGCCCAAGATCTCCTGCCAAAACAAGG


GAGTCGTGGTCAATTCTTCAGTGATGGTGAAATTCCTCTTTCCACGCCCAGACCAGCAACATTCTGTAGC


TTACACATTTGAAGAGGATATCGTGACTACCGTCCAGGCCTCCTATTCTAAGAAAAAGCTCTTCTTAAGC


CTCTTGGATTTCCAGATTACACCAAAGACTGTTTCCAACTTGACTGAGAGCAGCTCCGAGTCCATCCAGA


GCTTCCTGCAGTCAATGATCACCGCTGTGGGCATCCCTGAGGTCATGTCTCGGCTCGAGGTAGTGTTTAC


AGCCCTCATGAACAGCAAAGGCGTGAGCCTCTTCGACATCATCAACCCTGAGATTATCACTCGAGATGGC


TTCCTGCTGCTGCAGATGGACTTTGGCTTCCCTGAGCACCTGCTGGTGGATTTCCTCCAGAGCTTGAGCT


AGAAGTCTCCAAGGAGGTCGGGATGGGGCTTGTAGCAGAAGGCAAGCACCAGGCTCACAGCTGGAACCCT


GGTGTCTCCTCCAGCGTGGTGGAAGTTGGGTTAGGAGTACGGAGATGGAGATTGGCTCCCAACTCCTCCC


TATCCTAAAGGCCCACTGGCATTAAAGTGCTGTATCCAAG (SEQ ID NO: 6682)


 


>gi|414668|emb|X75500.1|HSMTP H. sapiens mRNA for microsomal triglyceride


transfer protein


TGCAGTTGAGGATTGCTGGTCAATATGATTCTTCTTGCTGTGCTTTTTCTCTGCTTCATTTCCTCATATT


CAGCTTCTGTTAAAGGTCACACAACTGGTCTCTCATTAAATAATGACCGGCTGTACAAGCTCACGTACTC


CACTGAAGTTCTTCTTGATCGGGGCAAAGGAAAACTGCAAGACAGCGTGGGCTACCGCATTTCCTCCAAC


GTGGATGTGGCCTTACTATGGAGGAATCCTGATGGTGATGATGACCAGTTGATCCAAATAACGATGAAGG


ATGTAAATGTTGAAAATGTGAATCAGCAGAGAGGAGAGAAGAGCATCTTCAAAGGAAAAAGCCCATCTAA


AATAATGGGAAAGGAAAACTTGGAAGCTCTGCAAAGACCTACGCTCCTTCATCTAATCCATGGAAAGGTC


AAAGAGTTCTACTCATATCAAAATGAGGCAGTGGCCATAGAAAATATCAAGAGAGGTCTGGCTAGCCTAT


TTCAGACACAGTTAAGCTCTGGAACCACCAATGAGGTAGATATCTCTGGAAATTGTAAAGTGACCTACCA


GGCTCATCAAGACAAAGTGATCAAAATTAAGGCCTTGGATTCATGCAAAATAGCGAGGTCTGGATTTACG


ACCCCAAATCAGGTCTTGGGTGTCAGTTCAAAAGCTACATCTGTCACCACCTATAAGATAGAAGACAGCT


TTGTTATAGCTGTGCTTGCTGAAGAAACACACAATTTTGGACTGAATTTCCTACAAACCATTAAGGGGAA


AATAGTATCGAAGCAGAAATTAGAGCTGAAGACAACCGAAGCAGGCCCAAGATTGATGTCTGGAAAGCAG


GCTGCAGCCATAATCAAAGCAGTTGATTCAAAGTACACGGCCATTCCCATTGTGGGGCAGGTCTTCCAGA


GCCACTGTAAAGGATGTCCTTCTCTCTCGGAGCTCTGGCGGTCCACCAGGAAATACCTGCAGCCTGACAA


CCTTTCCAAGGCTGAGGCTGTCAGAAACTTCCTGGCCTTCATTCAGCACCTCAGGACTGCGAAGAAAGAA


GAGATCCTTCAAATACTAAAGATGGAAAATAAGGAAGTATTACCTCAGCTGGTGGATGCTGTCACCTCTG


CTCAGACCTCAGACTCATTAGAAGCCATTTTGGACTTTTTGGATTTCAAAAGTGACAGCAGCATTATCCT


CCAGGAGAGGTTTCTCTATGCCTGTGGATTTGCTTCTCATCCCAATGAAGAACTCCTGAGAGCCCTCATT


AGTAAGTTCAAAGGTTCTATTGGTAGCAGTGACATCAGAGAAACTGTTATGATCATCACTGGGACACTTG


TCAGAAAGTTGTGTCAGAATGAAGGCTGCAAACTCAAAGCAGTAGTGGAAGCTAAGAAGTTAATCCTGGG


AGGACTTGAAAAAGCAGAGAAAAAAGAGGACACCAGGATGTATCTGCTGGCTTTGAAGAATGCCCTGCTT


CCAGAAGGCATCCCAAGTCTTCTGAAGTATGCAGAAGCAGGAGAAGGGCCCATCAGCCACCTGGCTACCA


CTGCTCTCCAGAGATATGATCTCCCTTTCATAACTGATGAGGTGAAGAAGACCTTAAACAGAATATACCA


CCAAAACCGTAAAGTTCATGAAAAGACTGTGCGCACTGCTGCAGCTGCTATCATTTTAAATAACAATCCA


TCCTACATGGACGTCAAGAACATCCTGCTGTCTATTGGGGAGCTTCCCCAAGAAATGAATAAATACATGC


TCGCCATTGTTCAAGACATCCTACGTTTTGAAATGCCTGCAAGCAAAATTGTCCGTCGAGTTCTGAAGGA


AATGGTCGCTCACAATTATGACCGTTTCTCCAGGAGTGGATCTTCTTCTGCCTACACTGGCTACATAGAA


CGTAGTCCCCGTTCGGCATCTACTTACAGCCTAGACATTCTCTACTCGGGTTCTGGCATTCTAAGGAGAA


GTAACCTGAACATCTTTCAGTACATTGGGAAGGCTGGTCTTCACGGTAGCCAGGTGGTTATTGAAGCCCA


AGGACTGGAAGCCTTAATCGCAGCCACCCCTGACGAGGGGGAGGAGAACCTTGACTCCTATGCTGGTATG


TCAGCCATCCTCTTTGATGTTCAGCTCAGACCTGTCACCTTTTTCAACGGATACAGTGATTTGATGTCCA


AAATGCTGTCAGCATCTGGCGACCCTATCAGTGTGGTGAAAGGACTTATTCTGCTAATAGATCATTCTCA


GGAACTTCAGTTACAATCTGGACTAAAAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATTGATATTTCA


GGTGCAATGGAGTTTAGCTTGTGGTATCGTGAGTCTAAAACCCGAGTGAAAAATAGGGTGACTGTGGTAA


TAACCACTGACATCACAGTGGACTCCTCTTTTGTGAAAGCTGGCCTGGAAACCAGTACAGAAACAGAAGC


AGGCTTGGAGTTTATCTCCACAGTGCAGTTTTCTCAGTACCCATTCTTAGTTTGCATGCAGATGGACAAG


GATGAAGCTCCATTCAGGCAATTTGAGAAAAAGTACGAAAGGCTGTCCACAGGCAGAGGTTATGTCTCTC


AGAAAAGAAAAGAAAGCGTATTAGCAGGATGTGAATTCCCGCTCCATCAAGAGAACTCAGAGATGTGCAA


AGTGGTGTTTGCCCCTCAGCCGGATAGTACTTCCAGCGGATGGTTTTGAAACTGACCTGTGATATTTTAC


TTGAATTTGTCTCCCCGAAAGGGACACAATGTGGCATGACTAAGTACTTGCTCTCTGAGAGCACAGCGTT


TACATATTTACCTGTATTTAAGATTTTTGTAAAAAGCTACAAAAAACTGCAGTTTGATCAAATTTGGGTA


TATGCAGTATGCTACCCACAGCGTCATTTTGAATCATCATGTGACGCTTTCAACAACGTTCTTAGTTTAC


TTATACCTCTCTCAAATCTCATTTGGTACAGTCAGAATAGTTATTCTCTAAGAGGAAACTAGTGTTTGTT


AAAAACAAAAATAAAAACAAAACCACACAAGGAGAACCCAATTTTGTTTCAACAATTTTTGATCAATGTA


TATGAAGCTCTTGATAGGACTTCCTTAAGCATGACGGGAAAACCAAACACGTTCCCTAATCAGGAAAAAA


AAAAAAAAAAAAAAGTAAGACACAAACAAACCATTTTTTTCTCTTTTTTTGGAGTTGGGGGCCCAGGGAG


AAGGGACAAGGCTTTTAAAAGACTTGTTAGCCAACTTCAAGAATTAATATTTATGTCTCTGTTATTGTTA


GTTTTAAGCCTTAAGGTAGAAGGCACATAGAAATAACATC (SEQ ID NO: 6683)


 


>gi|1217638|emb|X91148.1|HSMTTP H. sapiens mRNA for microsomal triglyceride


transfer protein


TGCAGTTGAGGATTGCTGGTCAATATGATTCTTCTTGCTGTGCTTTTTCTCTGCTTCATTTCCTCATATT


CAGCTTCTGTTAAAGGTCACACAACTGGTCTCTCATTAAATAATGACCGGCTGTACAAGCTCACGTACTC


CACTGAAGTTCTTCTTGATCGGGGCAAAGGAAAACTGCAAGACAGCGTGGGCTACCGCATTTCCTCCAAC


GTGGATGTGGCCTTACTATGGAGGAATCCTGATGGTGATGATGACCAGTTGATCCAAATAACGATGAAGG


ATGTAAATGTTGAAAATGTGAATCAGCAGAGAGGAGAGAAGAGCATCTTCAAAGGAAAAAGCCCATCTAA


AATAATGGGAAAGGAAAACTTGGAAGCTCTGCAAAGACCTACGCTCCTTCATCTAATCCATGGAAAGGTC


AAAGAGTTCTACTCATATCAAAATGAGGCAGTGGCCATAGAAAATATCAAGAGAGGTCTGGCTAGCCTAT


TTCAGACACAGTTAAGCTCTGGAACCACCAATGAGGTAGATATCTCTGGAAATTGTAAAGTGACCTACCA


GGCTCATCAAGACAAAGTGATCAAAATTAAGGCCTTGGATTCATGCAAAATAGCGAGGTCTGGATTTACG


ACCCCAAATCAGGTCTTGGGTGTCAGTTCAAAAGCTACATCTGTCACCACCTATAAGATAGAAGACAGCT


TTGTTATAGCTGTGCTTGCTGAAGAAACACACAATTTTGGACTGAATTTCCTACAAACCATTAAGGGGAA


AATAGTATCGAAGCAGAAATTAGAGCTGAAGACAACCGAAGCAGGCCCAAGATTGATGTCTGGAAAGCAG


GCTGCAGCCATAATCAAAGCAGTTGATTCAAAGTACACGGCCATTCCCATTGTGGGGCAGGTCTTCCAGA


GCCACTGTAAAGGATGTCCTTCTCTCTCGGAGCTCTGGCGGTCCACCAGGAAATACCTGCAGCCTGACAA


CCTTTCCAAGGCTGAGGCTGTCAGAAACTTCCTGGCCTTCATTCAGCACCTCAGGACTGCGAAGAAAGAA


GAGATCCTTCAAATACTAAAGATGGAAAATAAGGAAGTATTACCTCAGCTGGTGGATGCTGTCACCTCTG


CTCAGACCTCAGACTCATTAGAAGCCATTTTGGACTTTTTGGATTTCAAAAGTGACAGCAGCATTATCCT


CCAGGAGAGGTTTCTCTATGCCTGTGGATTTGCTTCTCATCCCAATGAAGAACTCCTGAGAGCCCTCATT


AGTAAGTTCAAAGGTTCTATTGGTAGCAGTGACATCAGAGAAACTGTTATGATCATCACTGGGACACTTG


TCAGAAAGTTGTGTCAGAATGAAGGCTGCAAACTCAAAGCAGTAGTGGAAGCTAAGAAGTTAATCCTGGG


AGGACTTGAAAAAGCAGAGAAAAAAGAGGACACCAGGATGTATCTGCTGGCTTTGAAGAATGCCCTGCTT


CCAGAAGGCATCCCAAGTCTTCTGAAGTATGCAGAAGCAGGAGAAGGGCCCATCAGCCACCTGGCTACCA


CTGCTCTCCAGAGATATGATGCTCCCTTTCATAACTGATGAGGTGAAGAAGACCTTAAACAGAATATACC


ACCAAAACCGTAAAGTTCATGAAAAGACTGTGCGCACTGCTGCAGCTGCTATCATTTTAAATAACAATCC


ATCCTACATGGACGTCAAGAACATCCTGCTGTCTATTGGGGAGCTTCCCCAAGAAATGAATAAATACATG


CTCGCCATTGTTCAAGACATCCTACGTTTTGAAATGCCTGCAAGCAAAATTGTCCGTCGAGTTCTGAAGG


AAATGGTCGCTCACAATTATGACCGTTTCTCCAGGAGTGGATCTTCTTCTGCCTACACTGGCTACATAGA


ACGTAGTCCCCGTTCGGCATCTACTTACAGCCTAGACATTCTCTACTCGGGTTCTGGCATTCTAAGGAGA


AGTAACCTGAACATCTTTCAGTACATTGGGAAGGCTGGTCTTCACGGTAGCCAGGTGGTTATTGAAGCCC


AAGGACTGGAAGCCTTAATCGCAGCCACCCCTGACGAGGGGGAGGAGAACCTTGACTCCTATGCTGGTAT


GTCAGCCATCCTCTTTGATGTTCAGCTCAGACCTGTCACCTTTTTCAACGGATACAGTGATTTGATGTCC


AAAATGCTGTCAGCATCTGGCGACCCTATCAGTGTGGTGAAAGGACTTATTCTGCTAATAGATCATTCTC


AGGAACTTCAGTTACAATCTGGACTAAAAGCCAATATAGAGGTCCAGGGTGGTCTAGCTATTGATATTTC


AGGTGCAATGGAGTTTAGCTTGTGGTATCGTGAGTCTAAAACCCGAGTGAAAAATAGGGTGACTGTGGTA


ATAACCACTGACATCACAGTGGACTCCTCTTTTGTGAAAGCTGGCCTGGAAACCAGTACAGAAACAGAAG


CAGGCTTGGAGTTTATCTCCACAGTGCAGTTTTCTCAGTACCCATTCTTAGTTTGCATGCAGATGGACAA


GGATGAAGCTCCATTCAGGCAATTTGAGAAAAAGTACGAAAGGCTGTCCACAGGCAGAGGTTATGTCTCT


CAGAAAAGAAAAGAAAGCGTATTAGCAGGATGTGAATTCCCGCTCCATCAAGAGAACTCAGAGATGTGCA


AAGTGGTGTTTGCCCCTCAGCCGGATAGTACTTCCAGCGGATGGTTTTGAAACTGACCTGTGATATTTTA


CTTGAATTTGTCTCCCCGAAAGGGACACAATGTGGCATGACTAAGTACTTGCTCTCTGAGAGCACAGCGT


TTACATATTTACCTGTATTTAAGATTTTTGTAAAAAGCTACAAAAAACTGCAGTTTGATCAAATTTGGGT


ATATGCAGTATGCTACCCACAGCGTCATTTTGAATCATCATGTGACGCTTTCAACAACGTTCTTAGTTTA


CTTATACCTCTCTCAAATCTCATTTGGTACAGTCAGAATAGTTATTCTCTAAGAGGAAACTAGTGTTTGT


TAAAAACAAAAATAAAAACAAAACCACACAAGGAGAACCCAATTTTGTTTCAACAATTTTTGATCAATGT


ATATGAAGCTCTTGATAGGACTTCCTTAAGCATGACGGGAAAACCAAACACGTTCCCTAATCAGGAAAAA


AAAAAAAAAAGAAAAAGTAAGACACAAACAAACCATTTTTTTCTCTTTTTTTGGAGTTGGGGGCCCAGGG


AGAAGGGACAAGGCTTTTAAAAGACTTGTTAGCCAACTTCAAGAATTAATATTTATGTCTCTGTTATTGT


TAGTTTTAAGCCTTAAGGTAGAAGGCACATAGAAATAACATCTCATCTTTCTGCTGACCATTTTAGTGAG


GTTGTTCCAAAGAGCATTCAGGTCTCTACCTCCAGCCCTGCAAAAATATTGGACCTAGCACAGAGGAATC


AGGAAAATTAATTTCAGAAACTCCATTTGATTTTTCTTTTGCTGTGTCTTTTTTGAGACTGTAATATGGT


ACACTGTCCTCTAAGGACATCCTCATTTTATCTCACCTTTTTGGGGGTGAGAGCTCTAGTTCATTTAACT


GTACTCTGCACAATAGCTAGGATGACTAAGAGAACATTGCTTCAAGAAACTGGTGGATTTGGATTTCCAA


AATATGAAATAAGGAGAAAAATGTTTTTATTTGTATGAATTAAAAGATCCATGTTGAACATTTGCAAATA


TTTATTAATAAACAGATGTGGTGATAAACCCAAAACAAATGACAGGTGCTTATTTTCCACTAAACACAGA


CACATGAAATGAAAGTTTAGCTAGCCCACTATTTGTTGTAAATTGAAAACGAAGTGTGATAAAATAAATA


TGTAGAAATCAAAAAAAAAAAAAAAAAAAA (SEQ ID NO: 6684)


 


>gi|21361125|ref|NM_001467.2|Homo sapiens glucose-6-phosphatase,


transport (glucose-6-phosphate) protein 1 (G6PT1), mRNA


GGCACGAGGGGCCACCGAGGCGCTGTCCCTGACCACCAGCACGAGACCCCTTTCTATCGCGCCAGTCCTG


TGGTCTCCGCACCTCTCCAGCTCCTGCACCCCCGGCCCCCGTGGTTCCCAGCCGCACAGTAGCGTGTCCT


GGGTAGCGTGAGGACCCACGGGGCTGAGCAGGTGCCACGAGCCCGCCGCCTCTTCGCCGCCCGCCGCCTC


TCCTCCTCTCCCGCCCGCCGCCTGGCCCTCCCCTACCAGGCTGAGCCTCTGGCTGCCAGAAGCGCGGGGC


CTCCGGGAGAATACGTGCGGTCGCCCGCTCCGCGTGCGCCTACGCCTTCTGCTCCAGTTGCTTTCCCAAT


TGAGCGGAAAAGCCGGGGCATGTTGCCGGGGCCCTGGGCGGGACGGTTGTGCCCTGCAGCCCGAAGCCCG


CCGGGGCACCTTCCCGCCCACGAGCTGCCCAGTCCCTCTGCTTGCGGCCCCTGCCAACGTCCCACAGGAC


ACTGGGTCCCCTTGGAGCCTCCCCAGGCTTAATGATTGTCCAGAAGGCGGCTATAAAGGGAGCCTGGGAG


GCTGGGTGGAGGAGGGAGCAGAAAAAACCCAACTCAGCAGATCTGGGAACTGTGAGAGCGGCAAGCAGGA


ACTGTGGTCAGAGGCTGTGCGTCTTGGCTGGTAGGGCCTGCTCTTTTCTACCATGGCAGCCCAGGGCTAT


GGCTATTATCGCACTGTGATCTTCTCAGCCATGTTTGGGGGCTACAGCCTGTATTACTTCAATCGCAAGA


CCTTCTCCTTTGTCATGCCATCATTGGTGGAAGAGATCCCTTTGGACAAGGATGATTTGGGGTTCATCAC


CAGCAGCCAGTCGGCAGCTTATGCTATCAGCAAGTTTGTCAGTGGGGTGCTGTCTGACCAGATGAGTGCT


CGCTGGCTCTTCTCTTCTGGGCTGCTCCTGGTTGGCCTGGTCAACATATTCTTTGCCTGGAGCTCCACAG


TACCTGTCTTTGCTGCCCTCTGGTTCCTTAATGGCCTGGCCCAGGGGCTGGGCTGGCCCCCATGTGGGAA


GGTCCTGCGGAAGTGGTTTGAGCCATCTCAGTTTGGCACTTGGTGGGCCATCCTGTCAACCAGCATGAAC


CTGGCTGGAGGGCTGGGCCCTATCCTGGCAACCATCCTTGCCCAGAGCTACAGCTGGCGCAGCACGCTGG


CCCTATCTGGGGCACTGTGTGTGGTTGTCTCCTTCCTCTGTCTCCTGCTCATCCACAATGAACCTGCTGA


TGTTGGACTCCGCAACCTGGACCCCATGCCCTCTGAGGGCAAGAAGGGCTCCTTGAAGGAGGAGAGCACC


CTGCAGGAGCTGCTGCTGTCCCCTTACCTGTGGGTGCTCTCCACTGGTTACCTTGTGGTGTTTGGAGTAA


AGACCTGCTGTACTGACTGGGGCCAGTTCTTCCTTATCCAGGAGAAAGGACAGTCAGCCCTTGTAGGTAG


CTCCTACATGAGTGCCCTGGAAGTTGGGGGCCTTGTAGGCAGCATCGCAGCTGGCTACCTGTCAGACCGG


GCCATGGCAAAGGCGGGACTGTCCAACTACGGGAACCCTCGCCATGGCCTGTTGCTGTTCATGATGGCTG


GCATGACAGTGTCCATGTACCTCTTCCGGGTAACAGTGACCAGTGACTCCCCCAAGCTCTGGATCCTGGT


ATTGGGAGCTGTATTTGGTTTCTCCTCGTATGGCCCCATTGCCCTGTTTGGAGTCATAGCCAACGAGAGT


GCCCCTCCCAACTTGTGTGGCACCTCCCACGCCATTGTGGGACTCATGGCCAATGTGGGCGGCTTTCTGG


CTGGGCTGCCCTTCAGCACCATTGCCAAGCACTACAGTTGGAGCACAGCCTTCTGGGTGGCTGAAGTGAT


TTGTGCGGCCAGCACGGCTGCCTTCTTCCTCCTACGAAACATCCGCACCAAGATGGGCCGAGTGTCCAAG


AAGGCTGAGTGAAGAGAGTCCAGGTTCCGGAGCACCATCCCACGGTGGCCTTCCCCCTGCACGCTCTGCG


GGGAGAAAAGGAGGGGCCTGCCTGGCTAGCCCTGAACCTTTCACTTTCCATTTCTGCGCCTTTTCTGTCA


CCCGGGTGGCGCTGGAAGTTATCAGTGGCTAGTGAGGTCCCAGCTCCCTGATCCTATGCTCTATTTAAAA


GATAACCTTTGGCCTTAGACTCCGTTAGCTCCTATTTCCTGCCTTCAGACAAACAGGAAACTTCTGCAGT


CAGGAAGGCTCCTGTACCCTTCTTCTTTTCCTAGGCCCTGTCCTGCCCGCATCCTACCCCATCCCCACCT


GAAGTGAGGCTATCCCTGCAGCTGCAGGGCACTAATGACCCTTGACTTCTGCTGGGTCCTAAGTCCTCTC


AGCAGTGGGTGACTGCTGTTGCCAATACCTCAGACTCCAGGGAAAGAGAGGAGGCCATCATTCTCACTGT


ACCACTAGGCGCAGTTGGATATAGGTGGGAAGAAAAGGTGACTTGTTATAGAAGATTAAAACTAGATTTG


ATACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA (SEQ ID NO: 6685)


 


gi|4503130|ref|NM_001904.1|Homo sapiens catenin (cadherin-associated


protein), beta 1, 88 kDa (CTNNB1), mRNA


AAGCCTCTCGGTCTGTGGCAGCAGCGTTGGCCCGGCCCCGGGAGCGGAGAGCGAGGGGAGGCGGAGACGG


AGGAAGGTCTGAGGAGCAGCTTCAGTCCCCGCCGAGCCGCCACCGCAGGTCGAGGACGGTCGGACTCCCG


CGGCGGGAGGAGCCTGTTCCCCTGAGGGTATTTGAAGTATACCATACAACTGTTTTGAAAATCCAGCGTG


GACAATGGCTACTCAAGCTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTT


AGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCACTACCACAGCTCCTTCTC


TGAGTGGTAAAGGCAATCCTGAGGAAGAGGATGTGGATACCTCCCAAGTCCTGTATGAGTGGGAACAGGG


ATTTTCTCAGTCCTTCACTCAAGAACAAGTAGCTGATATTGATGGACAGTATGCAATGACTCGAGCTCAG


AGGGTACGAGCTGCTATGTTCCCTGAGACATTAGATGAGGGCATGCAGATCCCATCTACACAGTTTGATG


CTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTT


GATTAACTATCAAGATGATGCAGAACTTGCCACACGTGCAATCCCTGAACTGACAAAACTGCTAAATGAC


GAGGACCAGGTGGTGGTTAATAAGGCTGCAGTTATGGTCCATCAGCTTTCTAAAAAGGAAGCTTCCAGAC


ACGCTATCATGCGTTCTCCTCAGATGGTGTCTGCTATTGTACGTACCATGCAGAATACAAATGATGTAGA


AACAGCTCGTTGTACCGCTGGGACCTTGCATAACCTTTCCCATCATCGTGAGGGCTTACTGGCCATCTTT


AAGTCTGGAGGCATTCCTGCCCTGGTGAAAATGCTTGGTTCACCAGTGGATTCTGTGTTGTTTTATGCCA


TTACAACTCTCCACAACCTTTTATTACATCAAGAAGGAGCTAAAATGGCAGTGCGTTTAGCTGGTGGGCT


GCAGAAAATGGTTGCCTTGCTCAACAAAACAAATGTTAAATTCTTGGCTATTACGACAGACTGCCTTCAA


ATTTTAGCTTATGGCAACCAAGAAAGCAAGCTCATCATACTGGCTAGTGGTGGACCCCAAGCTTTAGTAA


ATATAATGAGGACCTATACTTACGAAAAACTACTGTGGACCACAAGCAGAGTGCTGAAGGTGCTATCTGT


CTGCTCTAGTAATAAGCCGGCTATTGTAGAAGCTGGTGGAATGCAAGCTTTAGGACTTCACCTGACAGAT


CCAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGCAACTAAACAGG


AAGGGATGGAAGGTCTCCTTGGGACTCTTGTTCAGCTTCTGGGTTCAGATGATATAAATGTGGTCACCTG


TGCAGCTGGAATTCTTTCTAACCTCACTTGCAATAATTATAAGAACAAGATGATGGTCTGCCAAGTGGGT


GGTATAGAGGCTCTTGTGCGTACTGTCCTTCGGGCTGGTGACAGGGAAGACATCACTGAGCCTGCCATCT


GTGCTCTTCGTCATCTGACCAGCCGACACCAAGAAGCAGAGATGGCCCAGAATGCAGTTCGCCTTCACTA


TGGACTACCAGTTGTGGTTAAGCTCTTACACCCACCATCCCACTGGCCTCTGATAAAGGCTACTGTTGGA


TTGATTCGAAATCTTGCCCTTTGTCCCGCAAATCATGCACCTTTGCGTGAGCAGGGTGCCATTCCACGAC


TAGTTCAGTTGCTTGTTCGTGCACATCAGGATACCCAGCGCCGTACGTCCATGGGTGGGACACAGCAGCA


ATTTGTGGAGGGGGTCCGCATGGAAGAAATAGTTGAAGGTTGTACCGGAGCCCTTCACATCCTAGCTCGG


GATGTTCACAACCGAATTGTTATCAGAGGACTAAATACCATTCCATTGTTTGTGCAGCTGCTTTATTCTC


CCATTGAAAACATCCAAAGAGTAGCTGCAGGGGTCCTCTGTGAACTTGCTCAGGACAAGGAAGCTGCAGA


AGCTATTGAAGCTGAGGGAGCCACAGCTCCTCTGACAGAGTTACTTCACTCTAGGAATGAAGGTGTGGCG


ACATATGCAGCTGCTGTTTTGTTCCGAATGTCTGAGGACAAGCCACAAGATTACAAGAAACGGCTTTCAG


TTGAGCTGACCAGCTCTCTCTTCAGAACAGAGCCAATGGCTTGGAATGAGACTGCTGATCTTGGACTTGA


TATTGGTGCCCAGGGAGAACCCCTTGGATATCGCCAGGATGATCCTAGCTATCGTTCTTTTCACTCTGGT


GGATATGGCCAGGATGCCTTGGGTATGGACCCCATGATGGAACATGAGATGGGTGGCCACCACCCTGGTG


CTGACTATCCAGTTGATGGGCTGCCAGATCTGGGGCATGCCCAGGACCTCATGGATGGGCTGCCTCCAGG


TGACAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCATCCTTTAGCTGTATTGTCTGAACTTG


CATTGTGATTGGCCTGTAGAGTTGCTGAGAGGGCTCGAGGGGTGGGCTGGTATCTCAGAAAGTGCCTGAC


ACACTAACCAAGCTGAGTTTCCTATGGGAACAATTGAAGTAAACTTTTTGTTCTGGTCCTTTTTGGTCGA


GGAGTAACAATACAAATGGATTTTGGGAGTGACTCAAGAAGTGAAGAATGCACAAGAATGGATCACAAGA


TGGAATTTAGCAAACCCTAGCCTTGCTTGTTAAAATTTTTTTTTTTTTTTTTTTAAGAATATCTGTAATG


GTACTGACTTTGCTTGCTTTGAAGTAGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGTAACTGTTT


TTTAAGTCTCTCGTAGTGTTAAGTTATAGTGAATACTGCTACAGCAATTTCTAATTTTTAAGAATTGAGT


AATGGTGTAGAACACTAATTAATTCATAATCACTCTAATTAATTGTAATCTGAATAAAGTGTAACAATTG


TGTAGCCTTTTTGTATAAAATAGACAAATAGAAAATGGTCCAATTAGTTTCCTTTTTAATATGCTTAAAA


TAAGCAGGTGGATCTATTTCATGTTTTTGATCAAAAACTATTTGGGATATGTATGGGTAGGGTAAATCAG


TAAGAGGTGTTATTTGGAACCTTGTTTTGGACAGTTTACCAGTTGCCTTTTATCCCAAAGTTGTTGTAAC


CTGCTGTGATACGATGCTTCAAGAGAAAATGCGGTTATAAAAAATGGTTCAGAATTAAACTTTTAATTCA


TT (SEQ ID NO: 6686)


 


gi|18104977|ref|NM_002827.2|Homo sapiens protein tyrosine phosphatase,


non-receptor type 1 (PTPN1), mRNA


GTGATGCGTAGTTCCGGCTGCCGGTTGACATGAAGAAGCAGCAGCGGCTAGGGCGGCGGTAGCTGCAGGG


GTCGGGGATTGCAGCGGGCCTCGGGGCTAAGAGCGCGACGCGGCCTAGAGCGGCAGACGGCGCAGTGGGC


CGAGAAGGAGGCGCAGCAGCCGCCCTGGCCCGTCATGGAGATGGAAAAGGAGTTCGAGCAGATCGACAAG


TCCGGGAGCTGGGCGGCCATTTACCAGGATATCCGACATGAAGCCAGTGACTTCCCATGTAGAGTGGCCA


AGCTTCCTAAGAACAAAAACCGAAATAGGTACAGAGACGTCAGTCCCTTTGACCATAGTCGGATTAAACT


ACATCAAGAAGATAATGACTATATCAACGCTAGTTTGATAAAAATGGAAGAAGCCCAAAGGAGTTACATT


CTTACCCAGGGCCCTTTGCCTAACACATGCGGTCACTTTTGGGAGATGGTGTGGGAGCAGAAAAGCAGGG


GTGTCGTCATGCTCAACAGAGTGATGGAGAAAGGTTCGTTAAAATGCGCACAATACTGGCCACAAAAAGA


AGAAAAAGAGATGATCTTTGAAGACACAAATTTGAAATTAACATTGATCTCTGAAGATATCAAGTCATAT


TATACAGTGCGACAGCTAGAATTGGAAAACCTTACAACCCAAGAAACTCGAGAGATCTTACATTTCCACT


ATACCACATGGCCTGACTTTGGAGTCCCTGAATCACCAGCCTCATTCTTGAACTTTCTTTTCAAAGTCCG


AGAGTCAGGGTCACTCAGCCCGGAGCACGGGCCCGTTGTGGTGCACTGCAGTGCAGGCATCGGCAGGTCT


GGAACCTTCTGTCTGGCTGATACCTGCCTCTTGCTGATGGACAAGAGGAAAGACCCTTCTTCCGTTGATA


TCAAGAAAGTGCTGTTAGAAATGAGGAAGTTTCGGATGGGGCTGATCCAGACAGCCGACCAGCTGCGCTT


CTCCTACCTGGCTGTGATCGAAGGTGCCAAATTCATCATGGGGGACTCTTCCGTGCAGGATCAGTGGAAG


GAGCTTTCCCACGAGGACCTGGAGCCCCCACCCGAGCATATCCCCCCACCTCCCCGGCCACCCAAACGAA


TCCTGGAGCCACACAATGGGAAATGCAGGGAGTTCTTCCCAAATCACCAGTGGGTGAAGGAAGAGACCCA


GGAGGATAAAGACTGCCCCATCAAGGAAGAAAAAGGAAGCCCCTTAAATGCCGCACCCTACGGCATCGAA


AGCATGAGTCAAGACACTGAAGTTAGAAGTCGGGTCGTGGGGGGAAGTCTTCGAGGTGCCCAGGCTGCCT


CCCCAGCCAAAGGGGAGCCGTCACTGCCCGAGAAGGACGAGGACCATGCACTGAGTTACTGGAAGCCCTT


CCTGGTCAACATGTGCGTGGCTACGGTCCTCACGGCCGGCGCTTACCTCTGCTACAGGTTCCTGTTCAAC


AGCAACACATAGCCTGACCCTCCTCCACTCCACCTCCACCCACTGTCCGCCTCTGCCCGCAGAGCCCACG


CCCGACTAGCAGGCATGCCGCGGTAGGTAAGGGCCGCCGGACCGCGTAGAGAGCCGGGCCCCGGACGGAC


GTTGGTTCTGCACTAAAACCCATCTTCCCCGGATGTGTGTCTCACCCCTCATCCTTTTACTTTTTGCCCC


TTCCACTTTGAGTACCAAATCCACAAGCCATTTTTTGAGGAGAGTGAAAGAGAGTACCATGCTGGCGGCG


CAGAGGGAAGGGGCCTACACCCGTCTTGGGGCTCGCCCCACCCAGGGCTCCCTCCTGGAGCATCCCAGGC


GGGCGGCACGCCAACAGCCCCCCCCTTGAATCTGCAGGGAGCAACTCTCCACTCCATATTTATTTAAACA


ATTTTTTCCCCAAAGGCATCCATAGTGCACTAGCATTTTCTTGAACCAATAATGTATTAAAATTTTTTGA


TGTCAGCCTTGCATCAAGGGCTTTATCAAAAAGTACAATAATAAATCCTCAGGTAGTACTGGGAATGGAA


GGCTTTGCCATGGGCCTGCTGCGTCAGACCAGTACTGGGAAGGAGGACGGTTGTAAGCAGTTGTTATTTA


GTGATATTGTGGGTAACGTGAGAAGATAGAACAATGCTATAATATATAATGAACACGTGGGTATTTAATA


AGAAACATGATGTGAGATTACTTTGTCCCGCTTATTCTCCTCCCTGTTATCTGCTAGATCTAGTTCTCAA


TCACTGCTCCCCCGTGTGTATTAGAATGCATGTAAGGTCTTCTTGTGTCCTGATGAAAAATATGTGCTTG


AAATGAGAAACTTTGATCTCTGCTTACTAATGTGCCCCATGTCCAAGTCCAACCTGCCTGTGCATGACCT


GATCATTACATGGCTGTGGTTCCTAAGCCTGTTGCTGAAGTCATTGTCGCTCAGCAATAGGGTGCAGTTT


TCCAGGAATAGGCATTTGCCTAATTCCTGGCATGACACTCTAGTGACTTCCTGGTGAGGCCCAGCCTGTC


CTGGTACAGCAGGGTCTTGCTGTAACTCAGACATTCCAAGGGTATGGGAAGCCATATTCACACCTCACGC


TCTGGACATGATTTAGGGAAGCAGGGACACCCCCCGCCCCCCACCTTTGGGATCAGCCTCCGCCATTCCA


AGTCAACACTCTTCTTGAGCAGACCGTGATTTGGAAGAGAGGCACCTGCTGGAAACCACACTTCTTGAAA


CAGCCTGGGTGACGGTCCTTTAGGCAGCCTGCCGCCGTCTCTGTCCCGGTTCACCTTGCCGAGAGAGGCG


CGTCTGCCCCACCCTCAAACCCTGTGGGGCCTGATGGTGCTCACGACTCTTCCTGCAAAGGGAACTGAAG


ACCTCCACATTAAGTGGCTTTTTAACATGAAAAACACGGCAGCTGTAGCTCCCGAGCTACTCTCTTGCCA


GCATTTTCACATTTTGCCTTTCTCGTGGTAGAAGCCAGTACAGAGAAATTCTGTGGTGGGAACATTCGAG


GTGTCACCCTGCAGAGCTATGGTGAGGTGTGGATAAGGCTTAGGTGCCAGGCTGTAAGCATTCTGAGCTG


GGCTTGTTGTTTTTAAGTCCTGTATATGTATGTAGTAGTTTGGGTGTGTATATATAGTAGCATTTCAAAA


TGGACGTACTGGTTTAACCTCCTATCCTTGGAGAGCAGCTGGCTCTCCACCTTGTTACACATTATGTTAG


AGAGGTAGCGAGCTGCTCTGCTATATGCCTTAAGCCAATATTTACTCATCAGGTCATTATTTTTTACAAT


GGCCATGGAATAAACCATTTTTACAAAA (SEQ ID NO: 6687)


 


gi|12831192|gb|AF333324.1|Hepatitis C virus type 1b polyprotein mRNA,


complete cds


GCCAGCCCCCGATTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCA


GAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCA


TAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCG


CTCAATGCCTGGAGATTTGGGCGTGCCCCCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCC


TTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCATCATGAGCACA


AATCCTAAACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTTAAGTTCCCGGGCG


GTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGTGCGCGCGACTAG


GAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCCCAAGGCTCGCCGGCCCGAGGGT


AGGACCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTATGGCAACGAGGGTATGGGGTGGGCAGGATGGC


TCCTGTCACCCCGTGGCTCTCGGCCTAGTTGGGGCCCCACAGACCCCCGGCGTAGGTCGCGTAATTTGGG


TAAGGTCATCGATACCCTTACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTTGTCGGCGCCCCC


CTAGGAGGCGCTGCCAGGGCCCTGGCGCATGGCGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAACAG


GGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTAGCTTTGCTGTCTTGTTTGACCATCCCAGCTTC


CGCTTACGAGGTGCGCAACGTGTCCGGGATATACCATGTCACGAACGACTGCTCCAACTCAAGTATTGTG


TATGAGGCAGCGGACATGATCATGCACACCCCCGGGTGCGTGCCCTGCGTCCGGGAGAGTAATTTCTCCC


GTTGCTGGGTAGCGCTCACTCCCACGCTCGCGGCCAGGAACAGCAGCATCCCCACCACGACAATACGACG


CCACGTCGATTTGCTCGTTGGGGCGGCTGCTCTCTGTTCCGCTATGTACGTTGGGGATCTCTGCGGATCC


GTTTTTCTCGTCTCCCAGCTGTTCACCTTCTCACCTCGCCGGTATGAGACGGTACAAGATTGCAATTGCT


CAATCTATCCCGGCCACGTATCAGGTCACCGCATGGCTTGGGATATGATGATGAACTGGTCACCTACAAC


GGCCCTAGTGGTATCGCAGCTACTCCGGATCCCACAAGCCGTCGTGGACATGGTGGCGGGGGCCCACTGG


GGTGTCCTAGCGGGCCTTGCCTACTATTCCATGGTGGGGAACTGGGCTAAGGTCTTGATTGTGATGCTAC


TCTTTGCTGGCGTTGACGGGCACACCCACGTGACAGGGGGAAGGGTAGCCTCCAGCACCCAGAGCCTCGT


GTCCTGGCTCTCACAAGGGCCATCTCAGAAAATCCAACTCGTGAACACCAACGGCAGCTGGCACATCAAC


AGGACCGCTCTGAATTGCAATGACTCCCTCCAAACTGGGTTCATTGCTGCGCTGTTCTACGCACACAGGT


TCAACGCGTCCGGATGTCCAGAGCGCATGGCCAGCTGCCGCCCCATCGACAAGTTCGCTCAGGGGTGGGG


TCCCATCACTCACGTTGTGCCTAACATCTCGGACCAGAGGCCTTATTGCTGGCACTATGCACCCCAACCG


TGCGGTATTGTACCCGCGTCGCAGGTGTGTGGCCCAGTGTATTGCTTCACCCCGAGTCCTGTTGTGGTGG


GGACGACCGACCGTTCCGGAGTCCCCACGTATAGCTGGGGGGAGAATGAGACAGACGTGCTGCTACTCAA


CAACACGCGGCCGCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAATAGCACCGGGTTCACCAAGACG


TGCGGGGGCCCCCCGTGTAACATCGGGGGGGTTGGCAACAACACCTTGATTTGCCCCACGGATTGCTTCC


GAAAGCACCCCGAGGCCACTTACACCAAATGCGGCTCGGGTCCTTGGTTGACACCTAGGTGTCTAGTTGA


CTACCCATACAGACTTTGGCACTACCCCTGCACTATCAATTTTACCATCTTCAAGGTCAGGATGTACGTG


GGGGGCGTGGAGCACAGGCTCAACGCCGCGTGCAATTGGACCCGAGGAGAGCGCTGTGACCTGGAGGACA


GGGATAGATCAGAGCTTAGCCCGCTGCTATTGTCTACAACGGAGTGGCAGGTACTGCCCTGTTCCTTTAC


CACCCTACCGGCTCTGTCCACTGGATTGATCCACCTCCATCAGAATATCGTGGACGTGCAATACCTGTAC


GGTGTAGGGTCAGTGGTTGTCTCCGTCGTAATCAAATGGGAGTATGTTCTGCTGCTCTTCCTTCTCCTGG


CGGACGCGCGCGTCTGTGCCTGCTTGTGGATGATGCTGCTGATAGCCCAGGCTGAGGCCACCTTAGAGAA


CCTGGTGGTCCTCAATGCGGCGTCTGTGGCCGGAGCGCATGGCCTTCTCTCCTTCCTCGTGTTCTTCTGC


GCCGCCTGGTACATCAAAGGCAGGCTGGTCCCTGGGGCGGCATATGCTCTCTATGGCGTATGGCCGTTGC


TCCTGCTCTTGCTGGCTTTACCACCACGAGCTTATGCCATGGACCGAGAGATGGCTGCATCGTGCGGAGG


CGCGGTTTTTGTAGGTCTGGTACTCTTGACCTTGTCACCATACTATAAGGTGTTCCTCGCTAGGCTCATA


TGGTGGTTACAATATTTTATCACCAGGGCCGAGGCGCACTTGCAAGTGTGGGTCCCCCCTCTTAATGTTC


GGGGAGGCCGCGATGCCATCATCCTCCTTACATGCGCGGTCCATCCAGAGCTAATCTTTGACATCACCAA


ACTCCTGCTCGCCATACTCGGTCCGCTCATGGTGCTCCAAGCTGGCATAACCAGAGTGCCGTACTTCGTG


CGCGCTCAAGGGCTCATTCATGCATGCATGTTAGTGCGGAAGGTCGCTGGGGGTCATTATGTCCAAATGG


CCTTCATGAAGCTGGGCGCGCTGACAGGCACGTACATTTACAACCATCTTACCCCGCTACGGGATTGGGC


CCACGCGGGCCTACGAGACCTTGCGGTGGCAGTGGAGCCCGTCGTCTTCTCCGACATGGAGACCAAGATC


ATCACCTGGGGAGCAGACACCGCGGCGTGTGGGGACATCATCTTGGGTCTGCCCGTCTCCGCCCGAAGGG


GAAAGGAGATACTCCTGGGCCCGGCCGATAGTCTTGAAGGGCGGGGGTGGCGACTCCTCGCGCCCATCAC


GGCCTACTCCCAACAGACGCGGGGCCTACTTGGTTGCATCATCACTAGCCTTACAGGCCGGGACAAGAAC


CAGGTCGAGGGAGAGGTTCAGGTGGTTTCCACCGCAACACAATCCTTCCTGGCGACCTGCGTCAACGGCG


TGTGTTGGACCGTTTACCATGGTGCTGGCTCAAAGACCTTAGCCGGCCCAAAGGGGCCAATCACCCAGAT


GTACACTAATGTGGACCAGGACCTCGTCGGCTGGCAGGCGCCCCCCGGGGCGCGTTCCTTGACACCATGC


ACCTGTGGCAGCTCAGACCTTTACTTGGTCACGAGACATGCTGACGTCATTCCGGTGCGCCGGCGGGGCG


ACAGTAGGGGGAGCCTGCTCTCCCCCAGGCCTGTCTCCTACTTGAAGGGCTCTTCGGGTGGTCCACTGCT


CTGCCCTTCGGGGCACGCTGTGGGCATCTTCCGGGCTGCCGTATGCACCCGGGGGGTTGCGAAGGCGGTG


GACTTTGTGCCCGTAGAGTCCATGGAAACTACTATGCGGTCTCCGGTCTTCACGGACAACTCATCCCCCC


CGGCCGTACCGCAGTCATTTCAAGTGGCCCACCTACACGCTCCCACTGGCAGCGGCAAGAGTACTAAAGT


GCCGGCTGCATATGCAGCCCAAGGGTACAAGGTGCTCGTCCTCAATCCGTCCGTTGCCGCTACCTTAGGG


TTTGGGGCGTATATGTCTAAGGCACACGGTATTGACCCCAACATCAGAACTGGGGTAAGGACCATTACCA


CAGGCGCCCCCGTCACATACTCTACCTATGGCAAGTTTCTTGCCGATGGTGGTTGCTCTGGGGGCGCTTA


TGACATCATAATATGTGATGAGTGCCATTCAACTGACTCGACTACAATCTTGGGCATCGGCACAGTCCTG


GACCAAGCGGAGACGGCTGGAGCGCGGCTTGTCGTGCTCGCCACCGCTACGCCTCCGGGATCGGTCACCG


TGCCACACCCAAACATCGAGGAGGTGGCCCTGTCTAATACTGGAGAGATCCCCTTCTATGGCAAAGCCAT


CCCCATTGAAGCCATCAGGGGGGGAAGGCATCTCATTTTCTGTCATTCCAAGAAGAAGTGCGACGAGCTC


GCCGCAAAGCTGTCAGGCCTCGGAATCAACGCTGTGGCGTATTACCGGGGGCTCGATGTGTCCGTCATAC


CAACTATCGGAGACGTCGTTGTCGTGGCAACAGACGCTCTGATGACGGGCTATACGGGCGACTTTGACTC


AGTGATCGACTGTAACACATGTGTCACCCAGACAGTCGACTTCAGCTTGGATCCCACCTTCACCATTGAG


ACGACGACCGTGCCTCAAGACGCAGTGTCGCGCTCGCAGCGGCGGGGTAGGACTGGCAGGGGTAGGAGAG


GCATCTACAGGTTTGTGACTCCGGGAGAACGGCCCTCGGGCATGTTCGATTCCTCGGTCCTGTGTGAGTG


CTATGACGCGGGCTGTGCTTGGTACGAGCTCACCCCCGCCGAGACCTCGGTTAGGTTGCGGGCCTACCTG


AACACACCAGGGTTGCCCGTTTGCCAGGACCACCTGGAGTTCTGGGAGAGTGTCTTCACAGGCCTCACCC


ACATAGATGCACACTTCTTGTCCCAGACCAAGCAGGCAGGAGACAACTTCCCCTACCTGGTAGCATACCA


AGCCACGGTGTGCGCCAGGGCTCAGGCCCCACCTCCATCATGGGATCAAATGTGGAAGTGTCTCATACGG


CTGAAACCTACGCTGCACGGGCCAACACCCTTGCTGTACAGGCTGGGAGCCGTCCAAAATGAGGTCACCC


TCACCCACCCCATAACCAAATACATCATGGCATGCATGTCGGCTGACCTGGAGGTCGTCACTAGCACCTG


GGTGCTGGTGGGCGGAGTCCTTGCAGCTCTGGCCGCGTATTGCCTGACAACAGGCAGTGTGGTCATTGTG


GGTAGGATTATCTTGTCCGGGAGGCCGGCTATTGTTCCCGACAGGGAGCTTCTCTACCAGGAGTTCGATG


AAATGGAAGAGTGCGCCACGCACCTCCCTTACATTGAGCAGGGAATGCAGCTCGCCGAGCAGTTCAAGCA


GAAAGCGCTCGGGTTACTGCAAACAGCCACCAAACAAGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAAG


TGGCGAGCCCTTGAGACATTCTGGGCGAAGCACATGTGGAATTTCATCAGCGGGATACAGTACTTAGCAG


GCTTATCCACTCTGCCTGGGAACCCCGCAATAGCATCATTGATGGCATTCACAGCCTCTATCACCAGCCC


GCTCACCACCCAAAGTACCCTCCTGTTTAACATCTTGGGGGGGTGGGTGGCTGCCCAACTCGCCCCCCCC


AGCGCCGCTTCGGCTTTCGTGGGCGCCGGCATCGCCGGTGCGGCTGTTGGCAGCATAGGCCTTGGGAAGG


TGCTTGTGGACATTCTGGCGGGTTATGGAGCAGGAGTGGCCGGCGCGCTCGTGGCCTTTAAGGTCATGAG


CGGCGAGATGCCCTCTACCGAGGACCTGGTCAATCTACTTCCTGCCATCCTCTCTCCTGGCGCCCTGGTC


GTCGGGGTCGTGTGTGCAGCAATACTGCGTCGGCACGTGGGTCCGGGAGAGGGGGCTGTGCAGTGGATGA


ACCGGCTGATAGCGTTCGCCTCGCGGGGTAATCACGTTTCCCCCACGCACTATGTGCCTGAGAGCGACGC


CGCAGCGCGTGTTACTCAGATCCTCTCCAGCCTTACCATCACTCAGCTGCTGAAAAGGCTCCACCAGTGG


ATTAATGAGGACTGCTCCACACCGTGTTCCGGCTCGTGGCTAAGGGATGTTTGGGACTGGATATGCACGG


TGTTGACTGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCAGCTACCGGGAGTCCCTTTTTTCTC


GTGCCAACGCGGGTACAAGGGAGTCTGGCGGGGAGACGGCATCATGCAAACCACCTGCCCATGTGGAGCA


CAGATCACCGGACATGTCAAAAACGGTTCCATGAGGATCGTCGGGCCTAAGACCTGCAGCAACACGTGGC


ATGGAACATTCCCCATCAACGCATACACCACGGGCCCCTGCACACCCTCTCCAGCGCCAAACTATTCTAG


GGCGCTGTGGCGGGTGGCCGCTGAGGAGTACGTGGAGGTCACGCGGGTGGGGGATTTCCACTACGTGACG


GGCATGACCACTGACAACGTAAAGTGCCCATGCCAGGTTCCGGCTCCTGAATTCTTCTCGGAGGTGGACG


GAGTGCGGTTGCACAGGTACGCTCCGGCGTGCAGGCCTCTCCTACGGGAGGAGGTTACATTCCAGGTCGG


GCTCAACCAATACCTGGTTGGGTCACAGCTACCATGCGAGCCCGAACCGGATGTAGCAGTGCTCACTTCC


ATGCTCACCGACCCCTCCCACATCACAGCAGAAACGGCTAAGCGTAGGTTGGCCAGGGGGTCTCCCCCCT


CCTTGGCCAGCTCTTCAGCTAGCCAGTTGTCTGCGCCTTCCTTGAAGGCGACATGCACTACCCACCATGT


CTCTCCGGACGCTGACCTCATCGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGGAACATCACCCGC


GTGGAGTCGGAGAACAAGGTGGTAGTCCTGGACTCTTTCGACCCGCTTCGAGCGGAGGAGGATGAGAGGG


AAGTATCCGTTCCGGCGGAGATCCTGCGGAAATCCAAGAAGTTCCCCGCAGCGATGCCCATCTGGGCGCG


CCCGGATTACAACCCTCCACTGTTAGAGTCCTGGAAGGACCCGGACTACGTCCCTCCGGTGGTGCACGGG


TGCCCGTTGCCACCTATCAAGGCCCCTCCAATACCACCTCCACGGAGAAAGAGGACGGTTGTCCTAACAG


AGTCCTCCGTGTCTTCTGCCTTAGCGGAGCTCGCTACTAAGACCTTCGGCAGCTCCGAATCATCGGCCGT


CGACAGCGGCACGGCGACCGCCCTTCCTGACCAGGCCTCCGACGACGGTGACAAAGGATCCGACGTTGAG


TCGTACTCCTCCATGCCCCCCCTTGAGGGGGAACCGGGGGACCCCGATCTCAGTGACGGGTCTTGGTCTA


CCGTGAGCGAGGAAGCTAGTGAGGATGTCGTCTGCTGCTCAATGTCCTACACATGGACAGGCGCCTTGAT


CACGCCATGCGCTGCGGAGGAAAGCAAGCTGCCCATCAACGCGTTGAGCAACTCTTTGCTGCGCCACCAT


AACATGGTTTATGCCACAACATCTCGCAGCGCAGGCCTGCGGCAGAAGAAGGTCACCTTTGACAGACTGC


AAGTCCTGGACGACCACTACCGGGACGTGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAA


ACTCCTATCCGTAGAGGAAGCCTGCAAGCTGACGCCCCCACATTCGGCCAAATCCAAGTTTGGCTATGGG


GCAAAGGACGTCCGGAACCTATCCAGCAAGGCCGTTAACCACATCCACTCCGTGTGGAAGGACTTGCTGG


AAGACACTGTGACACCAATTGACACCACCATCATGGCAAAAAATGAGGTTTTCTGTGTCCAACCAGAGAA


AGGAGGCCGTAAGCCAGCCCGCCTTATCGTATTCCCAGATCTGGGAGTCCGTGTATGCGAGAAGATGGCC


CTCTATGATGTGGTCTCCACCCTTCCTCAGGTCGTGATGGGCTCCTCATACGGATTCCAGTACTCTCCTG


GGCAGCGAGTCGAGTTCCTGGTGAATACCTGGAAATCAAAGAAAAACCCCATGGGCTTTTCATATGACAC


TCGCTGTTTCGACTCAACGGTCACCGAGAACGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGAC


TTGGCCCCCGAAGCCAGACAGGCCATAAAATCGCTCACAGAGCGGCTTTATATCGGGGGTCCTCTGACTA


ATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCGAGCGGCGTGCTGACGACTAGCTGCGGTAA


CACCCTCACATGTTACTTGAAGGCCTCTGCAGCCTGTCGAGCTGCGAAGCTCCAGGACTGCACGATGCTC


GTGAACGGAGACGACCTTGTCGTTATCTGTGAAAGCGCGGGAACCCAAGAGGACGCGGCGAGCCTACGAG


TCTTCACGGAGGCTATGACTAGGTACTCTGCCCCCCCCGGGGACCCGCCCCAACCAGAATACGACTTGGA


GCTGATAACATCATGTTCCTCCAATGTGTCGGTCGCCCACGATGCATCAGGCAAAAGGGTGTACTACCTC


ACCCGTGATCCCACCACCCCCCTCGCACGGGCTGCGTGGGAAACAGCTAGACACACTCCAGTTAACTCCT


GGCTAGGCAACATTATCATGTATGCGCCCACTTTGTGGGCAAGGATGATTCTGATGACTCACTTCTTCTC


CATCCTTCTAGCACAGGAGCAACTTGAAAAAGCCCTGGACTGCCAGATCTACGGGGCCTGTTACTCCATT


GAGCCACTTGACCTACCTCAGATCATTGAACGACTCCATGGCCTTAGCGCATTTTCACTCCATAGTTACT


CTCCAGGTGAGATCAATAGGGTGGCTTCATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAG


ACATCGGGCCAGGAGCGTCCGCGCTAGGCTACTGTCCCAGGGGGGGAGGGCCGCCACTTGTGGCAAGTAC


CTCTTCAACTGGGCAGTGAAGACCAAACTCAAACTCACTCCAATCCCGGCTGCGTCCCAGCTGGACTTGT


CCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATATATCACAGCCTGTCTCGTGCCCGACCCCGCTG


GTTCATGCTGTGCCTACTCCTACTTTCTGTAGGGGTAGGCATCTACCTGCTCCCCAACCGATGAACGGGG


AGCTAAACACTCCAGGCCAATAGGCCATTTCCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCT


TTTCCTTCTTTTTCCCTTTTTCTTTCTTCCTTCTTTAATGGTGGCTCCATCTTAGCCCTAGTCACGGCTA


GCTGTGAAAGGTCCGTGAGCCGCATGACTGCAGAGAGTGCTGATACTGGCCTCTCTGCAGATCATGT (SEQ ID NO: 6688)


 


gi|306286|gb|M96362.1|HPCUNKCDS Hepatitis C virus mRNA, complete cds


TGCCAGCCCCCGATTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGC


AGAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCC


ATAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCC


GCTCAATGCCTGGAGATTTGGGCGTGCCCCCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGC


CTTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCAC


GAATCCTAAACCTCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGATATTAAGTTCCCGGGC


GGTGGTCAGATCGTTGGTGGAGTTTACTTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGTGCGCGCGACTA


GGAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAGCCTATCCCCAAGGCTCGCCGGCCCGAGGG


CAGGGCCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTATGGCAATGAGGGCTTGGGGTGGGCAGGATGG


CTCCTGTCACCCCGCGGCTCCCGGCCTAGTTGGGGCCCCACGGACCCCCGGCGTAAGTCGCGTAATTTGG


GTAAGGTCATCGACACCCTCACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCC


CCTAGGGGGCGTTGCCAGGGCCCTGGCACATGGTGTCCGGGTGCTGGAGGACGGCGTGAACTATGCAACA


GGGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCTCTGCTGTCTTGTTTGACCACCCCAGTTT


CCGCTTATGAAGTGCGTAACGCGTCCGGGATGTACCATGTCACGAACGACTGCTCCAACTCAAGCATTGT


GTATGAGGCAGCGGACATGATCATGCACACTCCCGGGTGCGTGCCCTGCGTTCGGGAGGACAACTCCTCC


CGTTGCTGGGTGGCACTTACTCCCACGCTCGCGGCCAGGAATGCCAGCGTCCCCACTACGACATTGCGAC


GCCATGTCGACTTGCTCGTTGGGGTAGCTGCTTTCTGTTCCGCTATGTACGTGGGGGACCTCTGCGGATC


TGTTTTCCTTGTTTCCCAGCTGTTCACCTTTTCGCCTCGCCGGCATGAGACGGTACAGGACTGCAACTGC


TCAATCTATCCCGGCCGCGTATCAGGTCACCGCATGGCCTGGGATATGATGATGAACTGGTCGCCTACAA


CAGCCCTAGTGGTATCGCAGCTACTCCGGATCCCACAAGCTGTCGTGGACATGGTGACAGGGTCCCACTG


GGGAATCCTGGCGGGCCTTGCCTACTATTCCATGGTGGGGAACTGGGCTAAGGTCTTAATTGCGATGCTA


CTCTTTGCCGGCGTTGACGGAACCACCCACGTGACAGGGGGGGCGCAAGGTCGGGCCGCTAGCTCGCTAA


CGTCCCTCTTTAGCCCTGGGCCGGTTCAGCACCTCCAGCTCATAAACACCAACGGCAGCTGGCATATCAA


CAGGACCGCCCTGAGCTGCAATGACTCCCTCAACACTGGGTTTGTTGCCGCGCTGTTCTACAAATACAGG


TTCAACGCGTCCGGGTGCCCGGAGCGCTTGGCCACGTGCCGCCCCATTGATACATTCGCGCAGGGGTGGG


GTCCCATCACTTACACTGAGCCTCATGATTTGGATCAGAGGCCCTATTGCTGGCACTACGCGCCTCAACC


GTGTGGTATTGTGCCCACGTTGCAGGTGTGTGGCCCAGTATACTGCTTCACCCCGAGTCCTGTTGCGGTG


GGGACTACCGATCGTTTCGGTGCCCCTACATACAGATGGGGGGCAAATGAGACGGACGTGCTGCTCCTTA


ACAACGCCGGGCCGCCGCAAGGCAACTGGTTCGGCTGTACATGGATGAATGGCACTGGGTTCACCAAGAC


ATGTGGGGGCCCCCCGTGTAACATCGGGGGGGTCGGCAACAATACCTTGACCTGCCCCACGGACTGCTTC


CGAAAGCACCCCGGGGCCACTTACACCAAATGCGGTTCGGGGCCTTGGTTAACACCCAGGTGCTTAGTCG


ACTACCCGTACAGGCTCTGGCATTACCCCTGCACTGTCAACTTTACCATCTTTAAGGTTAGGATGTACGT


GGGGGGCGCGGAGCACAGGCTCGACGCCGCATGCAACTGGACTCGGGGAGAGCGTTGTGACCTGGAGGAC


AGGGATAGGTCAGAGCTTAGCCCGCTGCTGCTGTCTACAACAGAGTGGCAGGTACTGCCCTGTTCCTTCA


CAACCCTACCGGCTCTGTCCACTGGTTTGATTCATCTCCATCAGAACATCGTGGACATACAATACCTGTA


CGGTATAGGGTCGGCGGTTGTCTCCTTTGCGATCAAATGGGAGTATATTGTGCTGCTCTTCCTTCTTCTG


GCGGACGCGCGCGTCTGCGCTTGCTTGTGGATGATGCTGCTGGTAGCGCAAGCCGAGGCCGCCTTAGAGA


ACCTGGTGGTCCTCAATGCAGCGTCCGTGGCCGGAGCGCATGGCATTCTTTCCTTCATTGTGTTCTTCTG


TGCTGCCTGGTACATCAAGGGCAGGCTGGTTCCCGGAGCGGCATACGCCCTCTATGGCGTATGGCCGCTG


CTTCTGCTTCTGCTGGCGTTACCACCACGGGCGTACGCCATGGACCGGGAGATGGCCGCATCGTGCGGAG


GCGCGGTTTTTGTAGGTCTGGTACTCTTGACCTTGTCACCACACTATAAAGTGTTCCTTGCCAGGTTCAT


ATGGTGGCTACAATATCTCATCACCAGAACCGAAGCGCATCTGCAAGTGTGGGTCCCCCCTCTCAACGTT


CGGGGGGGTCGCGATGCCATCATCCTCCTCACATGCGTGGTCCACCCAGAGCTAATCTTTGACATCACAA


AATATTTGCTCGCCATATTCGGCCCGCTCATGGTGCTCCAGGCCGGCATAACTAGAGTGCCGTACTTCGT


GCGCGCACAAGGGCTCATTCGTGCATGCATGTTGGCGCGGAAAGTCGTGGGGGGTCATTACGTCCAAATG


GTCTTCATGAAGCTGGCCGCACTAGCAGGTACGTACGTTTATGACCATCTTACTCCACTGCGAGATTGGG


CTCACACGGGCTTACGAGACCTTGCAGTGGCAGTAGAGCCCGTTGTCTTCTCTGACATGGAGACCAAAGT


CATCACCTGGGGGGCAGACACCGCGGCGTGCGGGGACATCATCTTGGCCCTGCCTGCTTCCGCCCGAAGG


GGGAAGGAGATACTTCTGGGACCGGCCGATAGTCTTGAAGGACAGGGGTGGCGACTCCTTGCGCCCATCA


CGGCCTACTCCCAACAAACGCGAGGCCTGCTTGGTTGCATCATCACTAGCCTTACAGGCCGGGACAAGAA


CCAGGTTGAGGGGGAGGTTCAAGTGGTTTCCACCGCAACACAATCTTTCCTGGCGACCTGCATCAATGGC


GTGTGTTGGACTGTCTTCCACGGCGCCGGCTCAAAGACCCTAGCCGGCCCAAAGGGTCCAATCACCCAAA


TGTACACCAATGTAGACCAGGACCTTGTTGGCTGGCCGGCACCTCCTGGGGCGCGTTCCCTGACACCATG


CACTTGCGGCTCCTCGGACCTTTACCTGGTCACGAGACATGCTGATGTCATTCCGGTGCGCCGGCGGGGT


GACGGTAGGGGGAGCCTACTCCCCCCCAGGCCTGTCTCCTACTTGAAGGGCTCCTCGGGTGGTCCACTGC


TCTGCCCTTCGGGGCACGCTGTCGGCATACTTCCGGCTGCTGTATGCACCCGGGGGGTTGCCATGGCGGT


GGAATTCATACCCGTTGAGTCTATGGAAACTACTATGCGGTCTCCGGTCTTCACGGACAATCCGTCTCCC


CCGGCTGTACCGCAGACATTCCAAGTGGCCCACTTACACGCTCCCACCGGCAGCGGCAAGAGCACTAGGG


TGCCGGCTGCATATGCAGCCCAAGGGTACAAGGTGCTCGTCCTAAATCCGTCCGTCGCCGCCACCTTGGG


TTTTGGGGCGTATATGTCCAAGGCACATGGTATCGACCCCAACCTTAGAACTGGGGTAAGGACCATCACC


ACAGGTGCCCCTATCACATACTCCACCTATGGCAAGTTCCTTGCCGACGGTGGCGGCTCCGGGGGCGCCT


ATGACATCATAATGTGTGATGAGTGCCACTCAACTGACTCGACTACCATTTATGGCATCGGCACAGTCCT


GGACCAAGCGGAGACGGCTGGAGCGCGGCTCGTGGTGCTCTCCACCGCTACGCCTCCGGGATCGGTCACC


GTGCCACACCTCAATATCGAGGAGGTGGCCCTGTCTAATACTGGAGAGATCCCCTTCTACGGCAAAGCCA


TTCCCATCGAGGCTATCAAGGGGGGAAGGCATCTCATTTTCTGCCATTCCAAGAAGAAGTGTGACGAACT


CGCCGCAAAGCTGTCAGGCCTCGGACTCAATGCCGTAGCGTATTACCGGGGTCTTGACGTGTCCGTCATA


CCGACCAGCGGAGACGTTGTTGTCGTGGCGACGGACGCTCTAATGACGGGCTTTACCGGCGACTTTGACT


CAGTGATCGACTGTAATACGTGTGTCACCCAGACAGTCGATTTCAGCTTGGACCCCACCTTCACCATTGA


GACGACGACCGTGCCCCAAGACGCAGTGTCGCGCTCGCAGAGGCGAGGCAGGACTGGTAGGGGCAGGGCT


GGCATATACAGGTTTGTGACTCCAGGAGAACGGCCCTCGGGCATGTTCGATTCTTCGGTCCTGTGTGAGT


GTTATGACGCGGGTTGTGCGTGGTACGAACTCACGCCCGCTGAGACCTCGGTTAGGTTGCGGGCGTACCT


AAACACACCAGGGTTGCCCGTCTGCCAGGACCATCTGGAGTTCTCGGAGGGTGTCTTCACAGGCCTCACC


CACATAGATGCCCACTTCTTATCCCAGACTAAACAGGCAGGAGAGAACTTCCCCTACTTGGTAGCATACC


AGGCTACAGTGTGCGCCAGGGCTCAAGCCCCACCTCCATCGTGGGATGAAATGTGGAGGTGTCTCATACG


GCTGAAACCTACGCTGCACGGGCCAACACCCCTGCTGTATAGGTTAGGAGCCGTCCAAAATGAGGTCACC


CTCACACACCCCATAACCAAATTCATCATGACATGTATGTCGGCTGACCTGGAGGTCGTCACCAGCACCT


GGGTGCTGGTAGGCGGAGTCCTCGCAGCTCTGGCCGCGTACTGCCTGACAACAGGCAGCGTGGTCATTGT


GGGCAGGATCATCCTGTCCGGGAAGCCGGCTATCATCCCCGATAGGGAAGTTCTCTACCAGGAGTTCGAC


GAGATGGAGGAGTGTGCCTCACACCTCCCTTACTTCGAACAGGGAATGCAGCTCGCCGAGCAATTCAAAC


AGAAGGCGCTCGGGTTGCTGCAAACAGCCACCAAGCAGGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAA


GTGGCGAGCCCTTGAGACCTTCTGGGCGAAGCACATGTGGAACTTCATTAGTGGGATACAGTACTTGGCA


GGCTTGTCCACTCTGCCTGGGAACCCCGCAATACGATCACCGATGGCATTCACAGCCTCCATCACCAGCC


CGCTCACCACCCAGCATACCCTCTTGTTTAACATCTTGGGGGGATGGGTGGCTGCCCAACTCGCCCCCCC


CAGCGCTGCCTCAGCTTTCGTGGGCGCCGGCATCGCTGGAGCCGCTGTTGGCACGATAGGCCTTGGGAAG


GTGCTTGTGGACATTCTGGCAGGTTATGGAGCAGGGGTGGCGGGCGCACTTGTGGCCTTTAAGATCATGA


GCGGCGAGATGCCTTCAGCCGAGGACATGGTCAACTTACTCCCTGCCATCCTTTCTCCCGGTGCCCTGGT


CGTCGGGATTGTGTGTGCAGCAATACTGCGTCGGCATGTGGGCCCAGGGGAAGGGGCTGTGCAGTGGATG


AACCGGCTGATAGCGTTCGCCTCGCGGGGTAACCACGTCTCCCCCAGGCACTATGTGCCAGAGAGCGAGC


CTGCAGCGCGTGTTACCCAGATCCTTTCCAGCCTCACCATCACTCAGCTGTTGAAGAGACTCCACCAGTG


GATTAATGAGGACTGCTCTACGCCATGCTCCAGCTCGTGGCTAAGGGAGATTTGGGACTGGATCTGCACG


GTGTTGACTGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGATTACCGGGAGTCCCTTTTTTCT


CATGCCAACGCGGGTATAAGGGAGTCTGGCGGGGGGACGGCATCATGCACACCACCTGCCCATGCGGAGC


ACAGATCACCGGACACGTCAAAAACGGTTCCATGAGGATCGTTGGGCCTAAAACCTGCAGCAACACGTGG


TACGGGACATTCCCCATCAACGCGTACACCACGGGCCCCTGCACACCCTCCCCGGCGCCAAACTATTCCA


AGGCATTGTGGAGAGTGGCCGCTGAGGAGTACGTGGAGGTCACGCGGGTGGGAGATTTTCACTACGTGAC


GGGCATGACCACTGACAACGTGAAGTGTCCATGCCAGGTTCCGGCCCCCGAATTCTTCACGGAGGTGGAT


GGAGTGCGGTTGCACAGGTACGCTCCGGCGTGCAGACCTCTCCTACGGGAGGAGGTCGTATTCCAGGTCG


GGCTCCACCAGTACCTGGTCGGGTCACAGCTCCCATGCGAGCCCGAACCGGATGTAGCAGTGCTCACTTC


CATGCTCACTGACCCCTCCCACATTACAGCAGAGACGGCTAAGCGTAGGCTGGCCAGGGGGTCTCCCCCC


TCCTTGGCCAGCTCTTCAGCTAGCCAGTTGTCTGCGCCTTCCTTGAAGGCGACATGCACTACCCATCATG


ACTCCCCGGACGCTGACCTCATTGAGGCCAACCTCTTGTGGCGGCAAGAGATGGGCGGGAACATCACCCG


CGTGGAGTCAGAGAATAAGGTGGTAATCCTGGACTCTTTCGACCCGCTCCGAGCGGAGGATGATGAGGGG


GAAATATCCGTTCCGGCGGAGATCCTGCGGAAATCCAGGAAATTCCCCCCAGCGCTGCCCATATGGGCGC


CGCCGGATTACAACCCTCCGCTGCTAGAGTCCTGGAAGGACCCGGACTACGTTCCTCCGGTGGTACACGG


GTGCCCGTTGCCGCCCACCAAGGCCCCTCCAATACCACCTCCACGGAGGAAGAGGACGGTTGTCCTGACA


GAATCCACCGTGTCTTCTGCCTTGGCGGAGCTCGCTACTAAGACCTTCGGCAGCTCCGGATCGTCGGCCA


TCGACAGCGGTACGGCGACCGCCCCTCCTGACCAAGCCTCCGGTGACGGCGACAGAGAGTCCGACGTTGA


GTCGTTCTCCTCCATGCCCCCCCTTGAGGGAGAGCCGGGGGACCCCGATCTCAGCGACGGATCTTGGTCC


ACCGTGAGCGAGGAGGCTAGTGAGGACGTCGTCTGCTGTTCGATGTCCTACACATGGACAGGCGCCCTGA


TCACGCCATGCGCTGCGGAGGAAAGCAAGTTGCCCATCAACCCGTTGAGCAATTCTTTGCTACGTCACCA


CAACATGGTCTATGCTACAACATCCCGCAGCGCAGGCCTGCGGCAGAAGAAGGTCACCTTTGACAGACTG


CAAGTCCTGGACGACCACTACCGGGACGTGCTTAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTA


AACTTCTATCTGTAGAAGAAGCCTGCAAACTGACGCCCCCACATTCGGCCAAATCCAAATTTGGCTACGG


GGCGAAGGACGTCCGGAGCCTATCCAGCAGGGCCGTTACCCACATCCGCTCCGTGTGGAAGGACCTGCTG


GAAGACACTGAAACACCAATTAGCACTACCATCATGGCAAAAAATGAGGTTTTCTGTGTCCAACCAGAGA


AGGGAGGCCGCAAGCCAGCTCGCCTTATCGTGTTCCCAGATCTGGGAGTTCGTGTATGCGAGAAGATGGC


CCTTTATGACGTGGTCTCCACCCTTCCTCAGGCCGTGATGGGCTCCTCATACGGATTCCAGTACTCTCCT


AAGCAGCGGGTCGAGTTCCTGGTGAATACCTGGAAATCAAAGAAATGCCCCATGGGCTTCTCATATGACA


CCCGCTGTTTTGACTCAACGGTCACTGAGAATGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGA


CTTGGCCCCCGAAGCCAAACTGGCCATAAAGTCGCTCACAGAGCGGCTCTATATCGGGGGTCCCCTGACT


AATTCAAAAGGGCAGAACTGCGGTTACCGCCGGTGCCGCGCGAGCGGCGTGCTGACGACTAGCTGCGGTA


ATACCCTCACATGTTACCTGAAAGCCACTGCGGCCTGTCGAGCTGCGAAGCTCCGGGACTGCACGATGCT


CGTGAACGGAGACGACCTTGTCGTTATCTGTGAAAGCGCGGGAACCCAAGAGGATGCGGCGAGCCTACGA


GTCTTCACGGAGGCTATGACTAGGTACTCTGCCCCCCCTGGGGACCCGCCTCAACCGGAATACGACTTGG


AGTTGATAACATCATGTTCCTCCAATGTGTCGGTCGCACACGATGCATCTGGTAAAAGGGTGTACTACCT


CACCCGTGACCCTACCACCCCCCTTGCACGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTCAACTCC


TGGCTAGGCAACATCATCATGTATGCGCCCACCTTATGGGCAAGGATGATTCTGATGACTCATTTCTTCT


CCATCCTTCTAGCTCAGGAGCAACTTGAAAAAACCCTAGATTGTCAGATCTACGGGGCCTGTTACTCCAT


TGAACCACTTGATCTACCTCAGATCATTGAGCGACTCCATGGTCTTAGCGCATTTTCACTCCATAGTTAC


TCTCCAGGCGAGATCAATAGGGTGGCTTCATGCCTCAGAAAACTTGGGGTACCACCCTTGCGAGCCTGGA


GACATCGGGCCAGAAGTGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCCGCCACTTGTGGCAAGTA


CCTCTTCAACTGGGCGGTGAGGACCAAGCTCAAACTCACTCCAATCCCAGCCGCGTCCCGGTTGGACTTG


TCCGGCTGGTTCGTTGCTGGTTACAGCGGGGGAGACATATATCACAGCCTGTCTCGTGCCCGACCCCGCT


GGTTCATGTTGTGCCTACTCCTACTTTCCGTGGGGGTAGGCATCTACCTGCTCCCCAACCGATGAATGGG


GAGCTAAACACTCCAGGCCAATAGGCCGTTTCTC (SEQ ID NO: 6689)


 


gi|329739|gb|L02836.1|HPCCGENOM Hepatitis C China virus complete genome


ATTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCAGAAAGCGTCTA


GCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCATAGTGGTCTGC


GGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCGCTCAATGCCTG


GAGATTTGGGCGTGCCCCCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCCTTGTGGTACTG


CCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACGAATCCTAAACC


TCAAAGAAAAACCAAACGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGGCGGTGGTCAGATC


GTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGGTTGGGTGTGCGCGCGACTAGGAAGACTTCCG


AGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCCCAAGGCTCGCCGACCCGAGGGCAGGACCTGGGC


TCAGCCCGGGTATCCTTGGCCCCTCTATGGCAATGAGGGCTTTGGGTGGGCAGGATGGCTCCTGTCACCC


CGCGGCTCCCGGCCTAGTTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGGTAAGGTCATCG


ATACCCTCACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCCCCCTTGGGGGGCGC


TGCCAGGGCCCTGGCACATGGTGTCCGGGTTCTGGAGGACGGCGTGAACTATGCAACAGGGAATTTGCCC


GGTTGCTCTTTCTCTATCTTCCTTTTAGCCTTGCTATCCTGTTTGACCACCCCAGCTTCCGCTTACGAAG


TGCGTAACGTGTCCGGGATATACCATGTCACGAACGACTGCTCCAACTCAAGCATTGTGTATGAGGCAGC


GGACCTGATCATGCATACCCCTGGGTGCGTGCCCTGCGTTCGGGAAGGCAACTCCTCCCGTTGCTGGGTA


GCGCTCACTCCCACGCTCGCGGCCAGGAACGCCACGATCCCCACTGCGACAGTACGACGGCATGTCGATC


TGCTCGTTGGGGCGGCTGCTTTCTCTTCCGCCATGTACGTGGGGGATCTCTGCGGATCTGTTTTCCTTGT


CTCTCAGCTGTTCACCTTCTCGCCTCGCCGGTATGAGACAATACAGGACTGCAATTGCTCAATCTATCCC


GGCCACGTAACAGGTCACCGCATGGCTTGGGATATGATGATGAACTGGTCGCCTACAACAGCTCTAGTGG


TGTCGCAGTTACTCCGGATCCCTCAAGCCGTCATGGACATGGTGGTGGGGGCCCACTGGGGAGTCCTGGC


GGGCCTTGCCTACTATGCCATGGTGGGGAATTGGGCTAAGGTTTTGATTGTGATGCTACTCTTCGCCGGC


GTTGATGGGGATACCTACGCGTCTGGGGGGGCGCAGGGCCGCTCCACCCTCGGGTTCACGTCCCTCTTTA


CACCTGGGGCCTCTCAGAAGATCCAGCTTATAAATACCAATGGTAGCTGGCATATCAACAGGACTGCCCT


GAACTGCAATGACTCCCTCAATACTGGGTTTCTTGCCGCGCTGTTCTATACACACAGGTTCAACGCGTCC


GGATGCGCAGAGCGCATGGCCAGCTGCCGCCCCATTGATACATTCGATCAGGGCTGGGGCCCCATCACTT


ATACTGAGCCTGATAGCTCGGACCAGAGGCCTTATTGCTGGCACTACGCGCCTCGAAAGTGCGGCATCGT


ACCTGCGTCGGAGGTGTGCGGTCCAGTGTATTGTTTCACCCCAAGCCCTGTCGTCGTGGGGACGACCGAT


CGTTTCGGTGTCCCCACATATAGCTGGGGGGAGAATGAGACAGACGTGCTGCTCCTCAACAACACGCGGC


CGCCGCAAGGCAACTGGTTTGGCTGTACATGGATGAATGGCACTGGGTTCACCAAGACGTGCGGGGGGCC


TCCGTGTAACATCGGGGGGGTCGGCAACAACACTTTGACTTGCCCCACGGATTGCTTTCGGAAGCACCCC


GAGGCTACGTATACAAGGTGTGGTTCGGGGCCTTGGCTGACACCTAGGTGCTTAGTTGACTACCCATACA


GGCTCTGGCACTACCCCTGCACTGTCAACTTTGCCATCTTCAAAGTTAGGATGTATGTGGGGGGCGTGGA


GCACAGGCTCGATGCTGCATGCAACTGGACTCGAGGAGAGCGCTGTAACTTGGAGGACAGGGATAGATCA


GAACTCAGCCCGCTGCTACTGTCTACAACAGAGTGGCAGATACTACCCTGCGCCTTCACCACCCTACCGG


CTCTGTCCACTGGTTTAATCCATCTCCATCAGAACATCGTGGACGTGCAATACCTGTACGGTATAGGGTC


AGCGGTTGCCTCCTTTGCAATTAAATGGGAGTATGTCTTGTTGCTTTTCCTTCTACTAGCAGACGCGCGC


GTATGTGCCTGCTTGTGGATGATGCTGCTGATAGCCCAGGCCGAGGCCGCCTTAGAGAACCTGGTGGTCC


TCAATGCGGCGTCCGTGGCCGACGCGCATGGCATCCTCTCCTTCCTTGTGTTCTTTTGTGCCGCCTGGTA


CATTAAGGGCAGGCTGGTCCCCGGGGCAGCATACGCTTTCTACGGCGTGTGGCCGCTGCTCCTGCTCCTG


CTGACATTACCACCACGAGCTTACGCCATGGACCGGGAGATGGCTGCATCGTGCGGAGGCGCGGTTTTTG


TAGGTCTGGTATTCCTGACTTTGTCACCATACTACAAGGTGTTCCTCGCTAGGCTCATATGGTGGTTGCA


ATACTTCCTCACCATAGCCGAGGCGCACCTGCAAGTGTGGATCCCCCCTCTCAACATTCGAGGGGGCCGC


GATGCCATCATCCTCCTCACGTGTGCAATCCACCCAGAGTCAATCTTTGACATCACCAAACTCCTGCTCG


CCACGCTCGGTCCGCTCCTGGTGCTTCAGGCTGGCATAACTAGAGTGCCGTACTTTGTGCGCGCTCATGG


GCTCATTCGCGCGTGCATGCTATTGCGGAAAGTTGCTGGGGGTCATTATGTCCAAATGGCCTTCATGAAG


CTGGGCGCACTGACAGGTACGTACGTCTATAACCATCTTACTCCGCTGCAGTATTGGCCACGCGCGGGTT


TACGAGAACTCGCGGTGGCAGTAGAGCCCGTCATCTTCTCTGACATGGAGACCAAGATTATCACCTGGGG


GGCAGACACTGCAGCGTGTGGAGACATCATCTTGGGTTTACCCGTCTCCGCCCGAAGGGGAAAGGAGATA


CTCCTGGGGCCGGCCGATAGTCTTGAAGGGCAGGGGTGGCGACTCCTTGCGCCCATCACGGCCTACTCCC


AACAGACGCGGGGCTTACTTGGTTGCATCATCACTAGCCTCACAGGCCGAGACAAGAACCAGGTCGAGGG


GGAGGTTCAAGTGGTCTCCACCGCAACACAATCTTTCCTGGCGACCTGCATCAACGGTGTGTGTTGGACT


GTCTATCATGGCGCCGGCTCAAAAACCTTAGCCGGCCCAAAGGGCCCAATCACCCAAATGTACACCAATG


TAGACCAGGACCTCGTCGGCTGGCACCGGCCCCCCGGGGCGCGTTCCCTAACACCATGCACCTGCGGCAG


CTCGGACCTTTACTTGGTCACGAGACATGCTGATGTCATTCCGGTGCGCCGTCGAGGCGACAGTAGGGGG


AGTTTACTCTCCCCCAGGCCTGTCTCCTACCTGAAGGGCTCGTCGGGGGGCCCACTGCTCTGCCCCTTCG


GGCACGTTGCAGGCATCTTCCGGGCTGCTGTGTGCACCCGGGGGGTTGCGAAGGCGGTGGATTTTATACC


CGTTGAGACCATGGAAACTACCATGCGGTCCCCGGTCTTCACGGACAACTCATCCCCTCCTGCCGTACCG


CAGACATTCCAAGTGGCCCATCTACACGCTCCCACTGGCAGCGGCAAAAGCACCAAGGTGCCGGCTGCAT


ATGCAGCCCAAGGGTACAAGGTACTTGTCTTGAACCCGTCTGTTGCCGCCACTTTAGGTTTTGGGGCGTA


TATGTCTAAGGCACATGGTGTCGACCCCAACATTAGAACCGGGGTAAGGACCATCACCACGGGCGCCCCC


ATCACATACTCTACCTATGGCAAGTTCCTTGCTGATGGTGGTTGCTCTGGGGGTGCCTATGACATTATAA


TATGTGATGAGTGCCATTCAACTGACTCGACTACCATCTTGGGCATCGGCACGGTCCTGGACCAAGCGGA


GACGGCTGGAGCGCGGCTTGTCGTGCTCGCCACCGCTACGCCTCCGGGATCGGTCACCGTGCCACATCCA


AACATCGAGGAGGTGGCCCTGTCCAATACTGGAGAGATCCCCTTCTATGGTAAAGCCATCCCCATCGAAG


CCATCAGGGGGGGAAGGCATCTCATTTTCTGCCACTCCAAGAAGAAGTGTGACGAGCTTGCTGCAAAGCT


ATCATCGCTCGGGCTCAACGCTGTGGCGTACTACCGGGGGCTTGATGTGTCCGTCATACCATCTAGCGGA


GACGTCGTTGTCGTGGCAACGGACGCTCTAATGACGGGCTTTACGGGCGACTTTGACTCAGTGATCGACT


GTAACACATGTGTTACCCAAACAGTCGATTTCAGCTTGGACCCCACCTTCACCATCGAGACAACGACCGT


GCCCCAAGACGCGGTGTCGCGCTCGCAGCGGCGAGGTAGGACTGGCAGGGGTAGGGAAGGCATCTACAGG


TTTGTTACTCCAGGAGAACGGCCCTCGGGCATGTTCGACTCCTCAGTCCTGTGTGAGTGCTATGACGCGG


GCTGTGCTTGGTACGAGCTCACGCCGGCTGAGACCACGGTTAGGTTGCGGGCTTACCTAAATACACCAGG


GTTGCCCGTCTGCCAGGACCATCTGGAGTTCTGGGAGGGCGTCTTCACAGGTCTCACCCATATAGACGCT


CACTTTCTGTCCCAGACCAAGCAAGCAGGAGACAACTTCCCCTACCTGGTAGCATACCAAGCTACAGTGT


GTGCCAAGGCTCAGGCCCCACCTCCATCGTGGGATCAAATGTGGAAGTGCCTCACACGGCTAAAGCCTAC


GCTGCAGGGACCAACACCCCTGCTGTATAGGCTAGGAGCCGTCCAAAATGAGGTCACCCTCACACACCCC


ATAACTAAATACATCATGACATGCATGTCGGCTGACCTGGAGGTCGTCACCAGCACCTGGGTGCTGGTGG


GCGGAGTCCTTGCAGCTCTGGCCGCGTATTGCCTGACAACGGGCAGCGTGGTCATTGTGGGTAGGATTGT


CTTGTCCGGAAGTCCGGCTATTGTTCCTGACAGGGAAGTTCTTTACCAAGACTTCGACGAGATGGAAGAG


TGTGCCTCACACCTCCCTTACATCGAACAGGGAATGCAGCTCGCCGAGCAGTTCAAGCAGAAGGCGCTCG


GGTTGCTGCAAACAGCCACCAAGCAAGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAAGTGGCGAGCCCT


CGAGACATTTTGGGAAAAACACATGTGGAATTTCATCAGCGGGATACAGTACTTAGCAGGCTTATCCACT


CTGCCTGGGAACCCCGCAATGGCATCACTGATGGCATTCACAGCTTCTATCACCAGCCCGCTCACTACCC


AACACACCCTCCTGTTTAACATCTTGGGTGGATGGGTGGCTGCCCAACTCGCTCCCCCCAGCGCCGCTTC


GGCCTTTGTGGGCGCCGGCATTGCCGGTGCGGCTGTTGGCAGCATAGGCCTTGGGAAGGTGCTTGTGGAC


ATCCTGGCGGGTTATGGGGCGGGGGTGGCTGGCGCACTCGTGGCCTTTAAGGTCATGAGTGGCGAAATGC


CCTCCACTGAGGACCTGGTTAATTTACTCCCTGCCATCCTCTCTCCTGGTGCCCTAGTCGTCGGGGTCGT


GTGCGCAGCAATACTGCGCCGACACGTGGGCCCGGGAGAGGGGGCTGTGCAGTGGATGAACCGGCTGATA


GCGTTCGCTTCGCGGGGTAACCATGTCTCCCCCACGCACTATGTGCCTGAAAGTGACGCCGCAGCGCGTG


TTACCCAGATCCTCTCCAGCCTTACCATCACTCAGCTGCTGAAAAGACTTCACCAGTGGATTAATGAGGA


CTGTTCCACACCATGCTCCGGCTCGTGGCTAAGGGATGTTTGGGATTGGATATGCACGGTGTTGACCGAT


TTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCCGGAGTCCCTTTCCTCTCATGCCAACGCG


GGTACAAGGGAGTCTGGCGGGGGGACGGTATTATGCAAACCACCTGTCCATGTGGAGCACAGATTACTGG


ACATGTCAAAAACGGTTCCATGAGAATCGTTGGGCCTAAGACTTGTAGCAACACGTGGCATGGAACATTC


CCCATCAACGCGTACACCACGGGCCCCTGCACACCCTCCCCGGCGCCGAACTATTCCAGGGCGCTGTGGC


GGGTGGCTCCTGAGGAGTACGTGGAGGTTACGCGGGTGGGGGATTTCCACTACGTGACGGGCATGACCAC


CGACAACGTGAAATGCCCATGCCAAGTCCCGGCCCCTGAATTCTTCACGGAGGTGGATGGAGTACGGCTG


CACAGGTACGCTCCGGCGTGCAAACCTCTCCTACGGGAGGAGGTCGTGTTCCAGGTCGGGCTCAACCAAT


ACCTGGTTGGATCACAGCTCCCATGCGAGCCCGAGCCGGACGTAACAGTGCTCACTTCCATGCTTACCGA


CCCCTCCCACATCACAGCAGAGACGGCCAAGCGTAGGCTGGCCAGGGGGTCTCCCCCCTCCTTGGCCAGC


TCTTCAGCTAGCCAATTGTCTGCGCCTTCTTTGAAGGCGACATGTACTACCCATCATGACTCCCCGGACG


CCGACCTCATTGAGGCCAACCTCCTGTGGCGGCAGGAGATGGGCGGAAACATCACCCGTGTGGAGTCAGA


AAATAAGGTAGTGATCCTGGACTCTTTCGACCCGCTTCGGGCGGAGGAGGACGAGAGGGAAGTATCCGTT


GCGGCGGAGATCCTGCGGAAATCCAGGAAGTTCCCCTCAGCGCTGCCCATATGGGCACGCCCAGACTACA


ACCCTCCACTGCTAGAGTCCTGGAAGGACCCAGATTATGTCCCTCCGGTGGTACACGGGTGCCCGTTGCC


GCCTACCACGGCCCCTCCAGTACCACCTCCACGGAGAAAAAGGACGGTCGTCCTAACAGAGTCATCCGTG


TCTTCTGCCTTGGCGGAGCTCGCTACTAAGACCTTCGGCAGCTCTGAATCGTCGGCCGTCGACAGCGGCA


CGGCGACTGCCCCTCCTGACGAGGCCTCCGGCGGCGGCGACAAAGGATCCGACGTTGAGTCGTACTCCTC


CATGCCCCCCCTTGAGGGAGAGCCGGGGGACCCCGACCTCAGCGACGGGTCCTGGTCTACCGTGAGTGAG


GAGGCCAGTGAGGACGTCGTCTGCTGCTCAATGTCCTATACATGGACAGGCGCCTTGATCACGCCATGTG


CTGCGGAGGAGAGCAAGCTGCCCATCAACCCGCTGAGCAACTCCTTGCTGCGTCACCACAACATGGTCTA


TGCTACAACATCCCGCAGTGCAAGCCTACGGCAGAAGAAGGTCGCTTTTGACAGAATGCAAGTCCTGGAC


GACCACTACCGGGACGTGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCTAAACTCCTATCCA


TAGAAGAGGCCTGCAAGCTGACGCCCCCACATTCAGCCAAATCCAAATTTGGCTATGGGGCAAAAGACGT


CCGGAACCTATCCAGCAAGGCCGTTAACCACATCCGCTCCGTGTGGAAGGACTTGTTGGAAGACAATGAG


ACACCAATCAATACCACCATCATGGCAAAAAATGAGGTTTTCTGCGTCCAACCAGAGAAAGGAGGCCGTA


AGCCAGCTCGCCTTATCGTATTCCCAGACTTGGGAGTCCGTGTGTGCGAGAAGATGGCCCTTTATGACGT


GGTCTCCACCCTTCCTCAGCCCGTGATGGGCTCCTCATACGGATTCCAGTACTCTCCTGGGCAGCGGGTC


GAATTCCTGCTAAATGCCTGGAAATCAAAGGAAAACCCTATGGGCTTCTCATATGACACCCGCTGTTTTG


ACTCAACGGTCACTCAGAACGACATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGACTTGGCCCCCGA


GGCCAGACGGGCCATAAAGTCGCTCACAGAGCGGCTCTATATCGGGGGTCCCCTGACTAATTCAAAAGGG


CAGAACTGCGGTTATCGCCGGTGCCGCGCAAGTGGCGTGCTGACGACCAGCTGCGGTAATACCCTTACAT


GTTACTTGAAGGCCTCTGCGGCCTGTCGAGCTGCGAAGCTGCAGGACTGCACGATGCTCGTGAACGGAGA


CGACCTTGTCGTTATCTGTGAAAGCGCGGGAACTCAAGAGGATGCGGCGAGCCTACGAGTCTTCACGGAG


GCTATGACTAGGTACTCTGCCCCCCCTGGGGACCTGCCCCAACCAGAATACGACTTGGAGCTAATAACAT


CATGCTCCTCCAATGTGTCAGTCGCCCACGATGCATCTGGCAAAAGGGTGTACTACCTCACCCGTGACCC


CACCATCCCCCTCGCGCGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTCAACTCCTGGCTAGGCAAC


ATCATCATGTATGCGCCCACTCTATGGGCAAGGATGATTCTGATGACTCACTTCTTCTCCATCCTTCTAG


CTCAGGAGCAACTTGAGAAAGCCCTGGATTGCCAAATCTACGGGGCCTACTACTCCATTGAGCCACTTGA


CCTACCTCAGATCATTGAACGACTCCATGGCCTTAGCGCATTTTCACTCCATAGTTACTCTCCAGGTGAG


ATCAATAGGGTGGCGTCATGTCTCAGGAAACTTGGGGTACCACCCTTGCGAGTCTGGAGACATCGGGCCA


GAAGCGTCCGCGCTAAGCTACTGTCCCAGGGGGGGAGGGCCGCCACTTGTGGCAAGTACCTCTTCAACTG


GGCAGTAAAGACCAAGCTTAAACTCACTCCAATCCCGGCTGCGTCCCGGTTGGACTTGTCCGGCTGGTTC


GTTGCTGGTTACAGCGGGGGAGACATATATCACAGCCTGTCTCGTGCCCGACCCCGTTGGTTCATGTTGT


GCCTACTCCTACTTTCTGTAGGGGTAGGCATCTACCTGCTCCCCAACCGATGAACGGGGAGATAAACACT


CCAGGCCAATAGGCCATCCC (SEQ ID NO: 6690)


 


gi|15422182|gb|AY051292.1|Hepatitis C virus from India polyprotein mRNA,


complete cds


GCCAGCCCCCTGATGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCA


GAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCA


TAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCG


CTCAATGCCTGGAGATTTGGGCGTGCCCCCGCAAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCC


TTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACG


AATCCTAAACCTCAAAGAAAAACCAAACGTAACACCAACCGACGCCCACAGAACGTTAAGTTCCCGGGTG


GCGGCCAGATCGTTGGCGGAGTTTGCTTGTTGCCGCGCAGGGGTCCCAGAGTGGGTGTGCGCGCGACGAG


GAAGACTTCCGAGCGGTCACAACCTCGCGGAAGGCGTCAGCCTATTCCCAAGGCCCGCCGACCCGAGGGC


AGGTCCTGGGCGCAGCCCGGGTACCCTTGGCCCCTCTATGGCAACGAGGGCTGTGGGTGGGCAGGATGGC


TCTTGTCCCCCCGCGGCTCCCGGCCTAGTCGGGGCCCCTCTGACCCCCGGCGCAGGTCACGCAATTTGGG


TAAGGTCATCGATACCCTCACGTGTGGCTTCGCCGACCTCATGGGGTACATCCCGCTCGTCGGTGCTCCT


CTAGGGGGCGCTGCTAGGGCTCTGGCACATGGTGTTAGGGTTCTAGAAGACGGCGTAAATTACGCAACAG


GGAACCTTCCTGGTTGCTCTTTTTCTATCTTCTTGCTTGCTCTTCTCTCCTGCTTGACAGTCCCTGCTTC


GGCCGTCGAAGTGCGCAACTCTTCGGGGATCTACCATGTCACCAATGATTGCCCCAATGCGTCTGTTGTG


TACGAGACAGATAGCTTGATCATACATCTGCCCGGGTGTGTGCCCTGCGTACGCGAGGGCAACGCTTCGA


GGTGCTGGGTCTCCCTTAGTCCTACTGTTGCCGCTAAGGATCCGGGCGTCCCCGTCAACGAGATTCGGCG


TCACGTCGACCTGATTGTCGGGGCCGCTGCATTCTGTTCGGCTATGTATGTAGGGGACTTATGCGGTTCC


ATCTTCCTCGTTGGCCAGCTTTTCACCCTCTCCCCTAGGCGCCACTGGACAACACAAGACTGTAATTGCT


CCATCTACCCAGGACATGTGACAGGCCATCGAATGGCTTGGGACATGATGATGAATTGGTCACCTACTGG


CGCTTTGGTGGTAGCGCAGCTACTCCGGATCCCACAAGCCGTCTTGGATATGATAGCCGGTGCCCACTGG


GGTGTCCTAGCGGGCCCGGCATACTACTCCATGGTGGGGAACTGGGCTAAGGTTTTGGTTGTGCTACTGC


TCTTCGCTGGCGTCGATGCAACCACCCAAGTCACAGGTGGCACCGCGGGCCGTAATGCATATAGATTGGC


TAGCCTCTTCTCCACCGGCCCCAGCCAAAATATCCAGCTCATAAACTCCAATGGCAGCTGGCACATTAAC


AGGACTGCCCTGAATTGCAATGACAGCCTGCACACCGGCTGGGTAGCAGCGCTGTTCTACTCCCACAAGT


TCAACTCTTCGGGGCGTCCTGAGAGGATGGCTAGTTGTCGGCCTCTTACCGCCTTCGACCAAGGGTGGGG


GCCCATCACTTACGGGGGGAAAGCTAGTAACGACCAGCGGCCGTATTGCTGGCACTATGCCCCACGCCCG


TGCGGTATCGTGCCGGCGAAAGAGGTTTGCGGGCCTGTATACTGTTTCACACCCAGTCCCGTGGTAGTGG


GGACGACGGACAAGTACGGCGTTCCTACCTACACATGGGGCGAGAATGAGACGGATGTACTGCTCCTTAA


CAACTCTAGGCCGCCAATAGGGAATTGGTTCGGGTGTACGTGGATGAATTCCACTGGTTTCACCAAGACG


TGCGGGGCTCCTGCCTGTAACGTCGGCGGGAGCGAGACCAACACCCTGTCGTGCCCCACAGATTGCTTCC


GCAGACATCCGGACGCAACATACGCTAAGTGCGGCTCTGGCCCTTGGCTTAACCCTCGATGCATGGTGGA


CTACCCTTACAGGCTCTGGCACTATCCCTGCACAGTCAATTACACCATATTCAAGATCAGGATGTTCGTG


GGCGGGATTGAGCACAGGCTCACCGCCGCGTGCAACTGGACGCGGGGAGAGCGCTGCGACTTGGACGACA


GGGATCGTGCCGAGTTGAGCCCGCTGTTGCTGTCCACCACGCAATGGCAGGTCCTCCCCTGCTCATTCAC


AACGCTGCCCGCCCTGTCAACTGGCCTAATACATCTCCACCAGAACATCGTGGACGTGCAGTACCTCTAC


GGGTTGAGCTCGGTAGTTACATCCTGGGCCATAAGGTGGGAGTATGTCGTGCTCCTTTTCTTGCTGTTAG


CAGATGCCCGCATTTGTGCCTGCCTTTGGATGATGCTTCTCATATCCCAGGTAGAGGCGGCGCTGGAGAA


CCTGATAGTCCTCAACGCTGCTTCCCTGGCTGGGACACACGGCATCGTCCCTTTCTTCATCTTTTTTTGT


GCAGCCTGGTATCTGAAAGGCAAGTGGGCCCCTGGACTCGTCTACTCCGTCTACGGAATGTGGCCGCTGC


TCCTGCTTCTCCTGGCGTTGCCCCAACGGGCGTACGCCTTGGATCAGGAGTTGGCCGCGTCGTGTGGGGC


CGTGGTCTTCATCAGCCTAGCGGTACTTACCCTGTCGCCGTACTACAAACAGTACATGGCCCGCGGCATC


TGGTGGCTGCAGTACATGCTGACCAGAGCGGAGGCGCTCCTGCACGTCTGGGTCCCCTCGCTCAACGCCC


GGGGAGGGCGTGATGGTGCCATACTGCTCATGTGTGTGCTCCACCCGCACTTGCTCTTTGACATCACCAA


AATCATGCTGGCCATTCTCGGGCCCCTGTGGATCTTGCAGGCCAGTCTGCTCAGGGTGCCGTACTTCGTG


CGCGCCCACGGTCTCATTAGGCTCTGCATGCTGGTGCGCAAAACAGCGGGCGGTCACTATGTGCAGATGG


CTCTGTTGAAGCTGGGGGCACTTACTGGCACTTACATTTACAACCACCTTTCCCCACTCCAAGACTGGGC


TCATGGCAGCTTGCGTGATCTAGCGGTGGCCACCGAGCCCGTCATCTTCTCCCGGATGGAGATCAAGACT


ATCACCTGGGGGGCAGACACCGCGGCCTGTGGAGACATCATCAACGGGCTGCCTGTTTCTGCTCGGAGGG


GGAGAGAGGTGTTGTTGGGACCAGCCGATGCCCTGACTGACAAGGGATGGAGGCTTTTAGCCCCCATCAC


AGCTTACGCCCAACAGACACGAGGTCTCTTGGGCTGTATTGTCACCAGCCTCACCGGTCGGGACAAAAAT


CAAGTGGAGGGGGAAATCCAGATTGTGTCTACCGCAACCCAGACGTTCTTGGCCACTTGCATCAACGGAG


CTTGCTGGACTGTTTATCATGGGGCCGGATCGAGGACCATCGCTTCGGCGTCGGGTCCTGTGGTCCGGAT


GTACACCAATGTGGACCAGGATTTGGTGGGCTGGCCAGCGCCTCAGGGAGCGCGCTCCCTGACGCCGTGC


ACGTGCGGTGCCTCGGATCTGTACTTGGTCACGAGGCACGCGGATGTCATCCCAGTGCGGCGTCGAGGCG


ATAACAGGGGAAGCTTGCTTTCTCCCCGGCCCATCTCATACCTAAAAGGATCCTCGGGAGGCCCTCTGCT


CTGCCCCATGGGACATGTCGCGGGCATTTTTAGGGCCGCGGTGTGCACCCGTGGGGTTGCAAAGGCGGTC


GACTTTGTGCCCGTTGAGTCCTTAGAGACCACCATGAGGTCCCCAGTGTTTACTGACAATTCCAGCCCTC


CAACAGTGCCCCAGAGTTACCAGGTGGCACATCTACATGCACCCACTGGGAGTGGCAAGAGCACGAAGGT


GCCGGCCGCTTACGCAGCTCAAGGGTACAAGGTACTTGTGCTGAACCCGTCTGTTGCTGCCACCTTAGGG


TTCGGTGCTTATATGTCAAAGGCCCATGGGATTGACCCAAACGTCAGGACCGGCGTGAGGACCATTACCA


CAGGCTCCCCCATCACCTACTCCACCTACGGGAAATTTTTGGCTGATGGCGGATGCCCAGGAGGTGCGTA


CGACATCATAATATGTGACGAATGTCACTCAGTGGACGCCACCTCGATTCTGGGCATAGGGACCGTCTTG


GACCAAGCGGAGACGGCGGGGGTTAGGCTCACTGTCCTTGCCACCGCTACACCACCTGGCTTGGTCACCG


TGCCACATTCCAACATCGAGGAAGTTGCACTGTCCGCTGACGGGGAGAAACCATTTTATGGTAAGGCCAT


CCCCCTAAACTACATCAAGGGGGGGAGGCATCTCATTTTCTGTCATTCCAAGAAGAAGTGCGACGAGCTC


GCTGCAAAGCTGGTCGGTCTGGGCGTCAACGCGGTGGCCTTTTACCGTGGCCTCGACGTATCTGTCATTC


CAACTACAGGAGACGTCGTTGTTGTAGCGACCGACGCCTTGATGACTGGCTTCACCGGCGATTTCGACTC


TGTGATAGACTGCAACACCTGTGTCGTCCAGACAGTCGACTTCAGCCTAGACCCTATATTCTCTATTGAG


ACTTCCACCGTGCCCCAGGACGCCGTGTCCCGCTCCCAACGGAGGGGTAGGACCGGTCGAGGGAAGCATG


GTATTTACAGATATGTGTCACCCGGGGAGCGGCCGTCTGGCATGTTCGACTCCGTGGTCCTCTGTGAGTG


CTATGACGCGGGTTGTGCTTGGTACGAGCTTACACCCGCCGAGACCACAGTCAGGCTACGGGCATACCTT


AACACCCCAGGATTGCCCGTGTGCCAGGACCACTTGGAGTTCTGGGAGAGTGTCTTCACCGGCCTCACCC


ACATAGATGCCCACTTCCTGTCCCAGACGAAACAGAGTGGGGAGAACTTCCCCTACCTAGTCGCATACCA


AGCCACCGTGTGCGCTAGAGCTAGAGCTCCTCCCCCGTCATGGGACCAAATGTGGAAGTGCCTGATACGG


CTCAAGCCCACCCTCACTGGGGCTACCCCATTACTATACAGACTGGGTAGTGTACAGAATGAGATCACCT


TAACACACCCAATCACCCAATACATCATGGCTTGCATGTCGGCGGACCTGGAGGTCGTCACTAGCACGTG


GGTGTTGGTGGGCGGCGTCCTAGCCGCTTTGGCCGCTTACTGCCTGTCCACAGGCAGCGTGGTCATAGTG


GGCAGGATAATCCTAGGTGGGAAGCCGGCAGTCATACCTGACAGGGAGGTTCTCTACCGAGAGTTTGATG


AGATGGAGGAGTGCGCCGCCCACGTCCCCTACCTCGAGCAGGGGATGCATTTGGCTGGACAGTTCAAGCA


GAAAGCTCTCGGGTTGCTCCAGACAGCATCCAAGCAAGCGGAGACGATCACTCCCACTGTCCGCACCAAC


TGGCAGAAACTCGAGTCCTTCTGGGCTAAGCACATGTGGAACTTCGTTAGCGGGATACAATACCTGGCGG


GCCTGTCAACGCTGCCCGGGAACCCCGCTATAGCGTCGCTGATGTCGTTTACGGCCGCGGTGACGAGTCC


ACTAACCACCCAGCAAACCCTCTTCTTTAACATCTTAGGGGGGTGGGTGGCGGCCCAGCTTGCTTCCCCA


GCTGCCGCTACTGCTTTTGTCGGTGCTGGTATTACTGGCGCCGTTGTTGGCAGTGTGGGCCTAGGGAAGG


TCCTAGTGGACATTATTGCTGGCTACGGGGCTGGTGTGGCGGGGGCCCTCGTGGCTTTCAAAATCATGAG


CGGGGAGACCCCCACCACCGAGGATCTAGTCAACCTTCTGCCTGCCATCCTATCGCCAGGAGCTCTCGTT


GTCGGCGTGGTGTGCGCAGCAATACTACGCCGGCACGTGGGCCCTGGCGAGGGCGCCGTGCAGTGGATGA


ACCGGCTGATAGCGTTTGCTTCTCGGGGTAACCACGTCTCCCCTACACACTACGTGCCGGAGAGCGACGC


GTCGGCTCGTGTCACACAAATTCTCACCAGCCTCACTGTTACTCAGCTTCTGAAAAGGCTCCACGTGTGG


ATAAGCTCGGATTGCATCGCCCCGTGTGCTAGTTCTTGGCTTAAAGATGTCTGGGACTGGATATGCGAGG


TGCTGAGCGACTTCAAGAATTGGCTGAAGGCCAAACTTGTACCACAACTGCCCGGGATCCCATTCGTATC


CTGCCAACGCGGGTACCGTGGGGTCTGGCGGGGCGAGGGCATCGTGCACACTCGTTGCCCGTGTGGGGCC


AATATAACTGGACATGTCAAGAACGGTTCGATGAGAATCGTCGGGCCTAAGACTTGCAGCAACACCTGGC


GTGGGTCGTTCCCCATTAACGCTTACACTACAGGCCCGTGCACGCCCTCCCCGGCGCCGAACTATACGTT


CGCGCTATGGAGGGTGTCTGCAGAGGAGTATGTGGAGGTAAGGCGGCTGGGGGACTTCCATTACGTCACG


GGGGTGACCACTGATAAACTCAAGTGTCCATGCCAGGTCCCCTCACCCGAGTTCTTCACAGAGGTGGACG


GGGTGCGCCTGCATAGGTACGCCCCCCCCTGCAAACCCCTGCTGCGAGAAGAGGTGACGTTTAGCATCGG


GCTCAATGAATACTTGGTGGGGTCCCAGTTGCCCTGCGAGCCCGAGCCAGACGTAGCTGTACTGACATCA


ATGCTTACAGACCCCTCCCACATCACTGCAGAGACGGCAGCGCGTAGGCTGAAGCGGGGGTCTCCCCCCT


CCCTGGCCAGCTCTTCCGCCAGCCAGCTGTCCGCGCCGTCACTGAAGGCAACATGCACCACTCACCACGA


CTCTCCAGACGCTGACCTCATAGAAGCCAACCTCCTGTGGAGACAGGAGATGGGGGGGAACATCACTAGG


GTGGAGTCGGAGAACAAGATTGTCGTTCTGGATTCTTTCGACCCGCTCGTAGCGGAGGAGGATGATCGGG


AGATCTCTATTCCAGCTGAGATTCTGCGGAAGTTCAAGCAGTTTCCTCCCGCTATGCCCATATGGGCACG


GCCAGATTATAATCCTCCCCTTGTGGAACCGTGGAAGCGCCCGGACTATGAGCCACCCTTAGTCCACGGG


TGCCCCCTACCACCTCCCAAGCCAACTCCGGTGCCGCCACCCCGGAGAAAGAGGACGGTGGTGCTGGACG


AGTCTACAGTATCATCTGCTCTGGCTGAGCTTGCCACTAAGACCTTCGGCAGCTCTACAACCTCAGGCGT


GACAAGTGGTGAAGCGACTGAATCGTCCCCGGCGCCCTCCTGCGGCGGTGAGCTGGACTCCGAAGCTGAA


TCTTACTCCTCCATGCCCCCTCTCGAGGGGGAGCCGGGGGACCCCGATCTCAGCGACGGGTCTTGGTCTA


CCGTGAGCAGTGATGGTGGCACGGAAGACGTTGTGTGCTGCTCGATGTCTTACTCGTGGACGGGCGCTTT


AATCACGCCCTGTGCCTCAGAGGAAGCCAAGCTCCCTATCAACGCATTGAGCAACTCGCTGCTGCGCCAC


CACAACTTGGTGTATTCCACCACCTCTCGCAGCGCTGGCCAGAGACAGAAAAAAGTCACATTTGACAGAG


TGCAAGTCCTGGACGACCATTACCGGGACGTGCTCAAGGAGGCTAAGGCCAAGGCATCCACGGTGAAGGC


TAGACTGCTATCCGTTGAGGAAGCGTGTAGCCTGACGCCCCCACACTCCGCCAGATCAAAATTTGGCTAT


GGGGCGAAGGATGTCCGAAGCCATTCCAGTAAGGCTATACGCCACATCAACTCCGTGTGGCAGGACCTTC


TGGAGGACAATACAACACCCATAGACACTACCATCATGGCAAAGAATGAGGTCTTCTGTGTGAAGCCCGA


AAAGGGGGGCCGCAAGCCCGCTCGTCTTATCGTGTACCCCGACCTGGGAGTGCGCGTATGCGAGAAGAGG


GCTTTGTATGACGTAGTCAAACAGCTCCCCATTGCCGTGATGGGAGCCTCCTACGGGTTCCAGTACTCAC


CAGCGCAGCGGGTCGACTTCCTGCTTAAAGCGTGGAAATCTAAGAAAGTCCCCATGGGGTTTTCCTATGA


CACCCGTTGCTTTGACTCAACAGTCACTGAGGCTGATATCCGTACGGAGGAAGACCTCTACCAATCTTGT


GACCTGGCCCCTGAGGCTCGCATAGCCATAAGGTCCCTCACAGAGAGGCTTTACATCGGGGGCCCACTCA


CCAATTCTAAGGGACAAAACTGCGGCTATCGGCGATGCCGCGCAAGCGGCGTGCTGACCACTAGCTGCGG


TAACACCATAACCTGCTTCCTCAAAGCCAGTGCAGCCTGTCGAGCTGCGAAGCTCCAGGACTGCACCATG


CTCGTGTGCGGCGACGACCTCGTCGTTATCTGTGAGAGCGCCGGTGTCCAGGAGGACGCTGCGAGCCTGA


GAGCCTTCACGGAGGCTATGACCAGGTACTCCGCCCCCCCGGGAGACCCGCCTCAACCAGAATACGACTT


GGAGCTTATAACATCCTGCTCCTCCAATGTGTCGGTCGCGCGCGACGGCGCTGGCAAAAGGGTCTATTAT


CTGACCCGTGACCCTGAGACTCCCCTCGCGCGTGCCGCTTGGGAGACAGCAAGACACACTCCAGTGAACT


CCTGGCTAGGCAACATCATCATGTTTGCCCCCACTCTGTGGGTACGGATGGTCCTCATGACCCATTTTTT


CTCCATACTCATAGCTCAGGAGCACCTTGGAAAGGCTCTAGATTGTGAAATCTATGGAGCCGTACACTCC


GTCCAACCGTTGGACTTACCTGAAATCATCCAAAGACTCCACAGCCTCAGCGCGTTTTCGCTCCACAGTT


ACTCTCCAGGTGAAATCAATAGGGTGGCTGCATGCCTCAGGAAGCTTGGGGTTCCGCCCTTGCGAGCTTG


GAGACACCGGGCCCGGAGCGTTCGCGCCACACTCCTATCCCAGGGGGGGAAAGCCGCTATATGCGGTAAG


TACCTCTTCAACTGGGCGGTGAAAACCAAACTCAAACTCACTCCATTACCGTCCATGTCTCAGTTGGACT


TGTCCAACTGGTTCACGGGCGGTTACAGCGGGGGAGACATTTATCACAGCGTGTCTCATGCCCGGCCCCG


TTTGTTCCTCTGGTGCCTACTCCTACTTTCAGTAGGGGTAGGCATCTATCTCCTTCCCAACCGATAGACG


GNTGGGCAACCACTCCGGGTCTTTAGGCCCTATTTAAACACTCCAGGCCTTTAGGCCCCGT (SEQ ID NO: 6691)


 


gi|23510419|ref|NM_000043.3|Homo sapiens tumor necrosis factor receptor


superfamily, member 6 (TNFRSF6), transcript variant 1, mRNA


CCTACCCGCGCGCAGGCCAAGTTGCTGAATCAATGGAGCCCTCCCCAACCCGGGCGTTCCCCAGCGAGGC


TTCCTTCCCATCCTCCTGACCACCGGGGCTTTTCGTGAGCTCGTCTCTGATCTCGCGCAAGAGTGACACA


CAGGTGTTCAAAGACGCTTCTGGGGAGTGAGGGAAGCGGTTTACGAGTGACTTGGCTGGAGCCTCAGGGG


CGGGCACTGGCACGGAACACACCCTGAGGCCAGCCCTGGCTGCCCAGGCGGAGCTGCCTCTTCTCCCGCG


GGTTGGTGGACCCGCTCAGTACGGAGTTGGGGAAGCTCTTTCACTTCGGAGGATTGCTCAACAACCATGC


TGGGCATCTGGACCCTCCTACCTCTGGTTCTTACGTCTGTTGCTAGATTATCGTCCAAAAGTGTTAATGC


CCAAGTGACTGACATCAACTCCAAGGGATTGGAATTGAGGAAGACTGTTACTACAGTTGAGACTCAGAAC


TTGGAAGGCCTGCATCATGATGGCCAATTCTGCCATAAGCCCTGTCCTCCAGGTGAAAGGAAAGCTAGGG


ACTGCACAGTCAATGGGGATGAACCAGACTGCGTGCCCTGCCAAGAAGGGAAGGAGTACACAGACAAAGC


CCATTTTTCTTCCAAATGCAGAAGATGTAGATTGTGTGATGAAGGACATGGCTTAGAAGTGGAAATAAAC


TGCACCCGGACCCAGAATACCAAGTGCAGATGTAAACCAAACTTTTTTTGTAACTCTACTGTATGTGAAC


ACTGTGACCCTTGCACCAAATGTGAACATGGAATCATCAAGGAATGCACACTCACCAGCAACACCAAGTG


CAAAGAGGAAGGATCCAGATCTAACTTGGGGTGGCTTTGTCTTCTTCTTTTGCCAATTCCACTAATTGTT


TGGGTGAAGAGAAAGGAAGTACAGAAAACATGCAGAAAGCACAGAAAGGAAAACCAAGGTTCTCATGAAT


CTCCAACCTTAAATCCTGAAACAGTGGCAATAAATTTATCTGATGTTGACTTGAGTAAATATATCACCAC


TATTGCTGGAGTCATGACACTAAGTCAAGTTAAAGGCTTTGTTCGAAAGAATGGTGTCAATGAAGCCAAA


ATAGATGAGATCAAGAATGACAATGTCCAAGACACAGCAGAACAGAAAGTTCAACTGCTTCGTAATTGGC


ATCAACTTCATGGAAAGAAAGAAGCGTATGACACATTGATTAAAGATCTCAAAAAAGCCAATCTTTGTAC


TCTTGCAGAGAAAATTCAGACTATCATCCTCAAGGACATTACTAGTGACTCAGAAAATTCAAACTTCAGA


AATGAAATCCAAAGCTTGGTCTAGAGTGAAAAACAACAAATTCAGTTCTGAGTATATGCAATTAGTGTTT


GAAAAGATTCTTAATAGCTGGCTGTAAATACTGCTTGGTTTTTTACTGGGTACATTTTATCATTTATTAG


CGCTGAAGAGCCAACATATTTGTAGATTTTTAATATCTCATGATTCTGCCTCCAAGGATGTTTAAAATCT


AGTTGGGAAAACAAACTTCATCAAGAGTAAATGCAGTGGCATGCTAAGTACCCAAATAGGAGTGTATGCA


GAGGATGAAAGATTAAGATTATGCTCTGGCATCTAACATATGATTCTGTAGTATGAATGTAATCAGTGTA


TGTTAGTACAAATGTCTATCCACAGGCTAACCCCACTCTATGAATCAATAGAAGAAGCTATGACCTTTTG


CTGAAATATCAGTTACTGAACAGGCAGGCCACTTTGCCTCTAAATTACCTCTGATAATTCTAGAGATTTT


ACCATATTTCTAAACTTTGTTTATAACTCTGAGAAGATCATATTTATGTAAAGTATATGTATTTGAGTGC


AGAATTTAAATAAGGCTCTACCTCAAAGACCTTTGCACAGTTTATTGGTGTCATATTATACAATATTTCA


ATTGTGAATTCACATAGAAAACATTAAATTATAATGTTTGACTATTATATATGTGTATGCATTTTACTGG


CTCAAAACTACCTACTTCTTTCTCAGGCATCAAAAGCATTTTGAGCAGGAGAGTATTACTAGAGCTTTGC


CACCTCTCCATTTTTGCCTTGGTGCTCATCTTAATGGCCTAATGCACCCCCAAACATGGAAATATCACCA


AAAAATACTTAATAGTCCACCAAAAGGCAAGACTGCCCTTAGAAATTCTAGCCTGGTTTGGAGATACTAA


CTGCTCTCAGAGAAAGTAGCTTTGTGACATGTCATGAACCCATGTTTGCAATCAAAGATGATAAAATAGA


TTCTTATTTTTCCCCCACCCCCGAAAATGTTCAATAATGTCCCATGTAAAACCTGCTACAAATGGCAGCT


TATACATAGCAATGGTAAAATCATCATCTGGATTTAGGAATTGCTCTTGTCATACCCCCAAGTTTCTAAG


ATTTAAGATTCTCCTTACTACTATCCTACGTTTAAATATCTTTGAAAGTTTGTATTAAATGTGAATTTTA


AGAAATAATATTTATATTTCTGTAAATGTAAACTGTGAAGATAGTTATAAACTGAAGCAGATACCTGGAA


CCACCTAAAGAACTTCCATTTATGGAGGATTTTTTTGCCCCTTGTGTTTGGAATTATAAAATATAGGTAA


AAGTACGTAATTAAATAATGTTTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA


AAAAAAAAAAAAAAAAAAAAAAAAA (SEQ ID NO: 6692)


 


gi|35910|emb|X12387.1|HSRCYP3 Human mRNA for cytochrome P-450 (cyp3 locus)


GAATTCCCAAAGAGCAACACAGAGCTGAAAGGAAGACTCAGAGGAGAGAGATAAGTAAGGAAAGTAGTGA


TGGCTCTCATCCCAGACTTGGCCATGGAAACCTGGCTTCTCCTGGCTGTCAGCCTGGTGCTCCTCTATCT


ATATGGAACCCATTCACATGGACTTTTTAAGAAGCTTGGAATTCCAGGGCCCACACCTCTGCCTTTTTTG


GGAAATATTTTGTCCTACCATAAGGGCTTTTGTATGTTTGACATGGAATGTCATAAAAAGTATGGAAAAG


TGTGGGGCTTTTATGATGGTCAACAGCCTGTGCTGGCTATCACAGATCCTGACATGATCAAAACAGTGCT


AGTGAAAGAATGTTATTCTGTCTTCACAAACCGGAGGCCTTTTGGTCCAGTGGGATTTATGAAAAGTGCC


ATCTCTATAGCTGAGGATGAAGAATGGAAGAGATTACGATCATTGCTGTCTCCAACCTTCACCAGTGGAA


AACTCAAGGAGATGGTCCCTATCATTGCCCAGTATGGAGATGTGTTGGTGAGAAATCTGAGGCGGGAAGC


AGAGACAGGCAAGCCTGTCACCTTGAAAGACGTCTTTGGGGCCTACAGCATGGATGTGATCACTAGCACA


TCATTTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAAAACACCAAGAAGCTTT


TAAGATTTGATTTTTTGGATCCATTCTTTCTCTCAATAACAGTCTTTCCATTCCTCATCCCAATTCTTGA


AGTATTAAATATCTGTGTGTTTCCAAGAGAAGTTACAAATTTTTTAAGAAAATCTGTAAAAAGGATGAAA


GAAAGTCGCCTCGAAGATACACAAAAGCACCGAGTGGATTTCCTTCAGCTGATGATTGACTCTCAGAATT


CAAAAGAAACTGAGTCCCACAAAGCTCTGTCCGATCTGGAGCTCGTGGCCCAATCAATTATCTTTATTTT


TGCTGGCTATGAAACCACGAGCAGTGTTCTCTCCTTCATTATGTATGAACTGGCCACTCACCCTGATGTC


CAGCAGAAACTGCAGGAGGAAATTGATGCAGTTTTACCCAATAAGGCACCACCCACCTATGATACTGTGC


TACAGATGGAGTATCTTGACATGGTGGTGAATGAAACGCTCAGATTATTCCCAATTGCTATGAGACTTGA


GAGGGTCTGCAAAAAAGATGTTGAGATCAATGGGATGTTCATTCCCAAAGGGTGGGTGGTGATGATTCCA


AGCTATGCTCTTCACCGTGACCCAAAGTACTGGACAGAGCCTGAGAAGTTCCTCCCTGAAAGATTCAGCA


AGAAGAACAAGGACAACATAGATCCTTACATATACACACCCTTTGGAAGTGGACCCAGAAACTGCATTGG


CATGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAACCT


TGTAAAGAAACACAGATCCCCCTGAAATTAAGCTTAGGAGGACTTCTTCAACCAGAAAAACCCGTTGTTC


TAAAGGTTGAGTCAAGGGATGGCACCGTAAGTGGAGCCTGAATTTTCCTAAGGACTTCTGCTTTGCTCTT


CAAGAAATCTGTGCCTGAGAACACCAGAGACCTCAAATTACTTTGTGAATAGAACTCTGAAATGAAGATG


GGCTTCATCCAATGGACTGCATAAATAACCGGGGATTCTGTACATGCATTGAGCTCTCTCATTGTCTGTG


TAGAGTGTTATACTTGGGAATATAAAGGAGGTGACCAAATCAGTGTGAGGAGGTAGATTTGGCTCCTCTG


CTTCTCACGGGACTATTTCCACCACCCCCAGTTAGCACCATTAACTCCTCCTGAGCTCTGATAAGAGAAT


CAACATTTCTCAATAATTTCCTCCACAAATTATTAATGAAAATAAGAATTATTTTGATGGCTCTAACAAT


GACATTTATATCACATGTTTTCTCTGGAGTATTCTATAGTTTTATGTTAAATCAATAAAGACCACTTTAC


AAAAGTATTATCAGATGCTTTCCTGCACATTAAGGAGAATCTATAGAACTGAATGAGAACCAACAAGTAA


ATATTTTTGGTCATTGTAATCACTGTTGGCGTGGGGCCTTTGTCAGAACTAGAATTTGATTATTAACATA


GGTGAAAGTTAATCCACTGTGACTTTGCCCATTGTTTAGAAAGAATATTCATAGTTTAATTATGCCTTTT


TTGATCAGGCACATGGCTCACGCCTGTAATCCTAGCAGTTTGGGAGGCTGAGCCGGGTGGATCGCCTGAG


GTCAGGAGTTCAAGACAAGCCTGGCCTACATGGTGAAACCCCATCTCTACTAAAAATACACAAATTAGCT


AGGCATGGTGGACTCGCCTGTAATCTCACTACACAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGA


GGCGGATGTTGAAGTGAGCTGAGATTGCACCACTGCACTCCAGTCTGGGTGAGAGTGAGACTCAGTCTTA


AAAAAATATGCCTTTTTGAAGCACGTACATTTTGTAACAAAGAACTGAAGCTCTTATTATATTATTAGTT


TTGATTTAATGTTTTCAGCCCATCTCCTTTCATATTTCTGGGAGACAGAAAACATGTTTCCCTACACCTC


TTGCTTCCATCCTCAACACCCAACTGTCTCGATGCAATGAACACTTAATAAAAAACAGTCGATTGGTCAA


AAAAAAAAAAAAAAAAAAAAAAAGAATTC (SEQ ID NO: 6693)


 


gi|339549|gb|M19154.1|HUMTGFB2A Human transforming growth factor-beta-2


mRNA, complete cds


GCCCCTCCCGTCAGTTCGCCAGCTGCCAGCCCCGGGACCTTTTCATCTCTTCCCTTTTGGCCGGAGGAGC


CGAGTTCAGATCCGCCACTCCGCACCCGAGACTGACACACTGAACTCCACTTCCTCCTCTTAAATTTATT


TCTACTTAATAGCCACTCGTCTCTTTTTTTCCCCATCTCATTGCTCCAAGAATTTTTTTCTTCTTACTCG


CCAAAGTCAGGGTTCCCTCTGCCCGTCCCGTATTAATATTTCCACTTTTGGAACTACTGGCCTTTTCTTT


TTAAAGGAATTCAAGCAGGATACGTTTTTCTGTTGGGCATTGACTAGATTGTTTGCAAAAGTTTCGCATC


AAAAACAACAACAACAAAAAACCAAACAACTCTCCTTGATCTATACTTTGAGAATTGTTGATTTCTTTTT


TTTATTCTGACTTTTAAAAACAACTTTTTTTTCCACTTTTTTAAAAAATGCACTACTGTGTGCTGAGCGC


TTTTCTGATCCTGCATCTGGTCACGGTCGCGCTCAGCCTGTCTACCTGCAGCACACTCGATATGGACCAG


TTCATGCGCAAGAGGATCGAGGCGATCCGCGGGCAGATCCTGAGCAAGCTGAAGCTCACCAGTCCCCCAG


AAGACTATCCTGAGCCCGAGGAAGTCCCCCCGGAGGTGATTTCCATCTACAACAGCACCAGGGACTTGCT


CCAGGAGAAGGCGAGCCGGAGGGCGGCCGCCTGCGAGCGCGAGAGGAGCGACGAAGAGTACTACGCCAAG


GAGGTTTACAAAATAGACATGCCGCCCTTCTTCCCCTCCGAAACTGTCTGCCCAGTTGTTACAACACCCT


CTGGCTCAGTGGGCAGCTTGTGCTCCAGACAGTCCCAGGTGCTCTGTGGGTACCTTGATGCCATCCCGCC


CACTTTCTACAGACCCTACTTCAGAATTGTTCGATTTGACGTCTCAGCAATGGAGAAGAATGCTTCCAAT


TTGGTGAAAGCAGAGTTCAGAGTCTTTCGTTTGCAGAACCCAAAAGCCAGAGTGCCTGAACAACGGATTG


AGCTATATCAGATTCTCAAGTCCAAAGATTTAACATCTCCAACCCAGCGCTACATCGACAGCAAAGTTGT


GAAAACAAGAGCAGAAGGCGAATGGCTCTCCTTCGATGTAACTGATGCTGTTCATGAATGGCTTCACCAT


AAAGACAGGAACCTGGGATTTAAAATAAGCTTACACTGTCCCTGCTGCACTTTTGTACCATCTAATAATT


ACATCATCCCAAATAAAAGTGAAGAACTAGAAGCAAGATTTGCAGGTATTGATGGCACCTCCACATATAC


CAGTGGTGATCAGAAAACTATAAAGTCCACTAGGAAAAAAAACAGTGGGAAGACCCCACATCTCCTGCTA


ATGTTATTGCCCTCCTACAGACTTGAGTCACAACAGACCAACCGGCGGAAGAAGCGTGCTTTGGATGCGG


CCTATTGCTTTAGAAATGTGCAGGATAATTGCTGCCTACGTCCACTTTACATTGATTTCAAGAGGGATCT


AGGGTGGAAATGGATACACGAACCCAAAGGGTACAATGCCAACTTCTGTGCTGGAGCATGCCCGTATTTA


TGGAGTTCAGACACTCAGCACAGCAGGGTCCTGAGCTTATATAATACCATAAATCCAGAAGCATCTGCTT


CTCCTTGCTGCGTGTCCCAAGATTTAGAACCTCTAACCATTCTCTACTACATTGGCAAAACACCCAAGAT


TGAACAGCTTTCTAATATGATTGTAAAGTCTTGCAAATGCAGCTAAAATTCTTGGAAAAGTGGCAAGACC


AAAATGACAATGATGATGATAATGATGATGACGACGACAACGATGATGCTTGTAACAAGAAAACATAAGA


GAGCCTTGGTTCATCAGTGTTAAAAAATTTTTGAAAAGGCGGTACTAGTTCAGACACTTTGGAAGTTTGT


GTTCTGTTTGTTAAAACTGGCATCTGACACAAAAAAAGTTGAAGGCCTTATTCTACATTTCACCTACTTT


GTAAGTGAGAGAGACAAGAAGCAAATTTTTTTTAAAGAAAAAAATAAACACTGGAAGAATTTATTAGTGT


TAATTATGTGAACAACGACAACAACAACAACAACAACAAACAGGAAAATCCCATTAAGTGGAGTTGCTGT


ACGTACCGTTCCTATCCCGCGCCTCACTTGATTTTTCTGTATTGCTATGCAATAGGCACCCTTCCCATTC


TTACTCTTAGAGTTAACAGTGAGTTATTTATTGTGTGTTACTATATAATGAACGTTTCATTGCCCTTGGA


AAATAAAACAGGTGTATAAAGTGGAGACCAAATACTTTGCCAGAAACTCATGGATGGCTTAAGGAACTTG


AACTCAAACGAGCCAGAAAAAAAGAGGTCATATTAATGGGATGAAAACCCAAGTGAGTTATTATATGACC


GAGAAAGTCTGCATTAAGATAAAGACCCTGAAAACACATGTTATGTATCAGCTGCCTAAGGAAGCTTCTT


GTAAGGTCCAAAAACTAAAAAGACTGTTAATAAAAGAAACTTTCAGTCAG (SEQ ID NO: 6694)


 


gi|186624|gb|J04111.1|HUMJUNA Human c-jun proto oncogene (JUN), complete


cds, clone hCJ-1


CCCGGGGAGGGGACCGGGGAACAGAGGGCCGAGAGGCGTGCGGCAGGGGGGAGGGTAGGAGAAAGAAGGG


CCCGACTGTAGGAGGGCAGCGGAGCATTACCTCATCCCGTGAGCCTCCGCGGGCCCAGAGAAGAATCTTC


TAGGGTGGAGTCTCCATGGTGACGGGCGGGCCCGCCCCCCTGAGAGCGACGCGAGCCAATGGGAAGGCCT


TGGGGTGACATCATGGGCTATTTTTAGGGGTTGACTGGTAGCAGATAAGTGTTGAGCTCGGGCTGGATAA


GGGCTCAGAGTTGCACTGAGTGTGGCTGAAGCAGCGAGGCGGGAGTGGAGGTGCGCGGAGTCAGGCAGAC


AGACAGACACAGCCAGCCAGCCAGGTCGGCAGTATAGTCCGAACTGCAAATCTTATTTTCTTTTCACCTT


CTCTCTAACTGCCCAGAGCTAGCGCCTGTGGCTCCCGGGCTGGTGGTTCGGGAGTGTCCAGAGAGCCTTG


TCTCCAGCCGGCCCCGGGAGGAGAGCCCTGCTGCCCAGGCGCTGTTGACAGCGGCGGAAAGCAGCGGTAC


CCCACGCGCCCGCCGGGGGACGTCGGCGAGCGGCTGCAGCAGCAAAGAACTTTCCCGGCGGGGAGGACCG


GAGACAAGTGGCAGAGTCCCGGAGCGAACTTTTGCAAGCCTTTCCTGCGTCTTAGGCTTCTCCACGGCGG


TAAAGACCAGAAGGCGGCGGAGAGCCACGCAAGAGAAGAAGGACGTGCGCTCAGCTTCGCTCGCACCGGT


TGTTGAACTTGGGCGAGCGCGAGCCGCGGCTGCCGGGCGCCCCCTCCCCCTAGCAGCGGAGGAGGGGACA


AGTCGTCGGAGTCCGGGCGGCCAAGACCCGCCGCCGGCCGGCCACTGCAGGGTCCGCACTGATCCGCTCC


GCGGGGAGAGCCGCTGCTCTGGGAAGTGAGTTCGCCTGCGGACTCCGAGGAACCGCTGCGCCCGAAGAGC


GCTCAGTGAGTGACCGCGACTTTTCAAAGCCGGGTAGCGCGCGCGAGTCGACAAGTAAGAGTGCGGGAGG


CATCTTAATTAACCCTGCGCTCCCTGGAGCGAGCTGGTGAGGAGGGCGCAGCGGGGACGACAGCCAGCGG


GTGCGTGCGCTCTTAGAGAAACTTTCCCTGTCAAAGGCTCCGGGGGGCGCGGGTGTCCCCCGCTTGCCAG


AGCCCTGTTGCGGCCCCGAAACTTGTGCGCGCACGCCAAACTAACCTCACGTGAAGTGACGGACTGTTCT


ATGACTGCAAAGATGGAAACGACCTTCTATGACGATGCCCTCAACGCCTCGTTCCTCCCGTCCGAGAGCG


GACCTTATGGCTACAGTAACCCCAAGATCCTGAAACAGAGCATGACCCTGAACCTGGCCGACCCAGTGGG


GAGCCTGAAGCCGCACCTCCGCGCCAAGAACTCGGACCTCCTCACCTCGCCCGACGTGGGGCTGCTCAAG


CTGGCGTCGCCCGAGCTGGAGCGCCTGATAATCCAGTCCAGCAACGGGCACATCACCACCACGCCGACCC


CCACCCAGTTCCTGTGCCCCAAGAACGTGACAGATGAGCAGGAGGGGTTCGCCGAGGGCTTCGTGCGCGC


CCTGGCCGAACTGCACAGCCAGAACACGCTGCCCAGCGTCACGTCGGCGGCGCAGCCGGTCAACGGGGCA


GGCATGGTGGCTCCCGCGGTAGCCTCGGTGGCAGGGGGCAGCGGCAGCGGCGGCTTCAGCGCCAGCCTGC


ACAGCGAGCCGCCGGTCTACGCAAACCTCAGCAACTTCAACCCAGGCGCGCTGAGCAGCGGCGGCGGGGC


GCCCTCCTACGGCGCGGCCGGCCTGGCCTTTCCCGCGCAACCCCAGCAGCAGCAGCAGCCGCCGCACCAC


CTGCCCCAGCAGATGCCCGTGCAGCACCCGCGGCTGCAGGCCCTGAAGGAGGAGCCTCAGACAGTGCCCG


AGATGCCCGGCGAGACACCGCCCCTGTCCCCCATCGACATGGAGTCCCAGGAGCGGATCAAGGCGGAGAG


GAAGCGCATGAGGAACCGCATCGCTGCCTCCAAGTGCCGAAAAAGGAAGCTGGAGAGAATCGCCCGGCTG


GAGGAAAAAGTGAAAACCTTGAAAGCTCAGAACTCGGAGCTGGCGTCCACGGCCAACATGCTCAGGGAAC


AGGTGGCACAGCTTAAACAGAAAGTCATGAACCACGTTAACAGTGGGTGCCAACTCATGCTAACGCAGCA


GTTGCAAACATTTTGAAGAGAGACCGTCGGGGGCTGAGGGGCAACGAAGAAAAAAAATAACACAGAGAGA


CAGACTTGAGAACTTGACAAGTTGCGACGGAGAGAAAAAAGAAGTGTCCGAGAACTAAAGCCAAGGGTAT


CCAAGTTGGACTGGGTTCGGTCTGACGGCGCCCCCAGTGTGCACGAGTGGGAAGGACTTGGTCGCGCCCT


CCCTTGGCGTGGAGCCAGGGAGCGGCCGCCTGCGGGCTGCCCCGCTTTGCGGACGGGCTGTCCCCGCGCG


AACGGAACGTTGGACTTTCGTTAACATTGACCAAGAACTGCATGGACCTAACATTCGATCTCATTCAGTA


TTAAAGGGGGGAGGGGGAGGGGGTTACAAACTGCAATAGAGACTGTAGATTGCTTCTGTAGTACTCCTTA


AGAACACAAAGCGGGGGGAGGGTTGGGGAGGGGCGGCAGGAGGGAGGTTTGTGAGAGCGAGGCTGAGCCT


ACAGATGAACTCTTTCTGGCCTGCTTTCGTTAACTGTGTATGTACATATATATATTTTTTAATTTGATTA


AAGCTGATTACTGTCAATAAACAGCTTCATGCCTTTGTAAGTTATTTCTTGTTTGTTTGTTTGGGTATCC


TGCCCAGTGTTGTTTGTAAATAAGAGATTTGGAGCACTCTGAGTTTACCATTTGTAATAAAGTATATAAT


TTTTTTATGTTTTGTTTCTGAAAATTCCAGAAAGGATATTTAAGAAAATACAATAAACTATTGGAAAGTA


CTCCCCTAACCTCTTTTCTGCATCATCTGTAGATCCTAGTCTATCTAGGTGGAGTTGAAAGAGTTAAGAA


TGCTCGATAAAATCACTCTCAGTGCTTCTTACTATTAAGCAGTAAAAACTGTTCTCTATTAGACTTAGAA


ATAAATGTACCTGATGTACCTGATGCTATGTCAGGCTTCATACTCCACGCTCCCCCAGCGTATCTATATG


GAATTGCTTACCAAAGGCTAGTGCGATGTTTCAGGAGGCTGGAGGAAGGGGGGTTGCAGTGGAGAGGGAC


AGCCCACTGAGAAGTCAAACATTTCAAAGTTTGGATTGCATCAAGTGGCATGTGCTGTGACCATTTATAA


TGTTAGAAATTTTACAATAGGTGCTTATTCTCAAAGCAGGAATTGGTGGCAGATTTTACAAAAGATGTAT


CCTTCCAATTTGGAATCTTCTCTTTGACAATTCCTAGATAAAAAGATGGCCTTTGTCTTATGAATATTTA


TAACAGCATTCTGTCACAATAAATGTATTCAAATACCAATAACAGATCTTGAATTGCTTCCCTTTACTAC


TTTTTTGTTCCCAAGTTATATACTGAAGTTTTTATTTTTAGTTGCTGAGGTT (SEQ ID NO: 6695)


 


gi|179982|gb|M57729.1|HUMCCC5 Human complement component C5 mRNA, complete


cds


CTACCTCCAACCATGGGCCTTTTGGGAATACTTTGTTTTTTAATCTTCCTGGGGAAAACCTGGGGACAGG


AGCAAACATATGTCATTTCAGCACCAAAAATATTCCGTGTTGGAGCATCTGAAAATATTGTGATTCAAGT


TTATGGATACACTGAAGCATTTGATGCAACAATCTCTATTAAAAGTTATCCTGATAAAAAATTTAGTTAC


TCCTCAGGCCATGTTCATTTATCCTCAGAGAATAAATTCCAAAACTCTGCAATCTTAACAATACAACCAA


AACAATTGCCTGGAGGACAAAACCCAGTTTCTTATGTGTATTTGGAAGTTGTATCAAAGCATTTTTCAAA


ATCAAAAAGAATGCCAATAACCTATGACAATGGATTTCTCTTCATTCATACAGACAAACCTGTTTATACT


CCAGACCAGTCAGTAAAAGTTAGAGTTTATTCGTTGAATGACGACTTGAAGCCAGCCAAAAGAGAAACTG


TCTTAACCTTCATAGATCCTGAAGGATCAGAAGTTGACATGGTAGAAGAAATTGATCATATTGGAATTAT


CTCTTTTCCTGACTTCAAGATTCCGTCTAATCCTAGATATGGTATGTGGACGATCAAGGCTAAATATAAA


GAGGACTTTTCAACAACTGGAACCGCATATTTTGAAGTTAAAGAATATGTCTTGCCACATTTTTCTGTCT


CAATCGAGCCAGAATATAATTTCATTGGTTACAAGAACTTTAAGAATTTTGAAATTACTATAAAAGCAAG


ATATTTTTATAATAAAGTAGTCACTGAGGCTGACGTTTATATCACATTTGGAATAAGAGAAGACTTAAAA


GATGATCAAAAAGAAATGATGCAAACAGCAATGCAAAACACAATGTTGATAAATGGAATTGCTCAAGTCA


CATTTGATTCTGAAACAGCAGTCAAAGAACTGTCATACTACAGTTTAGAAGATTTAAACAACAAGTACCT


TTATATTGCTGTAACAGTCATAGAGTCTACAGGTGGATTTTCTGAAGAGGCAGAAATACCTGGCATCAAA


TATGTCCTCTCTCCCTACAAACTGAATTTGGTTGCTACTCCTCTTTTCCTGAAGCCTGGGATTCCATATC


CCATCAAGGTGCAGGTTAAAGATTCGCTTGACCAGTTGGTAGGAGGAGTCCCAGTAATACTGAATGCACA


AACAATTGATGTAAACCAAGAGACATCTGACTTGGATCCAAGCAAAAGTGTAACACGTGTTGATGATGGA


GTAGCTTCCTTTGTGCTTAATCTCCCATCTGGAGTGACGGTGCTGGAGTTTAATGTCAAAACTGATGCTC


CAGATCTTCCAGAAGAAAATCAGGCCAGGGAAGGTTACCGAGCAATAGCATACTCATCTCTCAGCCAAAG


TTACCTTTATATTGATTGGACTGATAACCATAAGGCTTTGCTAGTGGGAGAACATCTGAATATTATTGTT


ACCCCCAAAAGCCCATATATTGACAAAATAACTCACTATAATTACTTGATTTTATCCAAGGGCAAAATTA


TCCATTTTGGCACGAGGGAGAAATTTTCAGATGCATCTTATCAAAGTATAAACATTCCAGTAACACAGAA


CATGGTTCCTTCATCCCGACTTCTGGTCTATTATATCGTCACAGGAGAACAGACAGCAGAATTAGTGTCT


GATTCAGTCTGGTTAAATATTGAAGAAAAATGTGGCAACCAGCTCCAGGTTCATCTGTCTCCTGATGCAG


ATGCATATTCTCCAGGCCAAACTGTGTCTCTTAATATGGCAACTGGAATGGATTCCTGGGTGGCATTAGC


AGCAGTGGACAGTGCTGTGTATGGAGTCCAAAGAGGAGCCAAAAAGCCCTTGGAAAGAGTATTTCAATTC


TTAGAGAAGAGTGATCTGGGCTGTGGGGCAGGTGGTGGCCTCAACAATGCCAATGTGTTCCACCTAGCTG


GACTTACCTTCCTCACTAATGCAAATGCAGATGACTCCCAAGAAAATGATGAACCTTGTAAAGAAATTCT


CAGGCCAAGAAGAACGCTGCAAAAGAAGATAGAAGAAATAGCTGCTAAATATAAACATTCAGTAGTGAAG


AAATGTTGTTACGATGGAGCCTGCGTTAATAATGATGAAACCTGTGAGCAGCGAGCTGCACGGATTAGTT


TAGGGCCAAGATGCATCAAAGCTTTCACTGAATGTTGTGTCGTCGCAAGCCAGCTCCGTGCTAATATCTC


TCATAAAGACATGCAATTGGGAAGGCTACACATGAAGACCCTGTTACCAGTAAGCAAGCCAGAAATTCGG


AGTTATTTTCCAGAAAGCTGGTTGTGGGAAGTTCATCTTGTTCCCAGAAGAAAACAGTTGCAGTTTGCCC


TACCTGATTCTCTAACCACCTGGGAAATTCAAGGCATTGGCATTTCAAACACTGGTATATGTGTTGCTGA


TACTGTCAAGGCAAAGGTGTTCAAAGATGTCTTCCTGGAAATGAATATACCATATTCTGTTGTACGAGGA


GAACAGATCCAATTGAAAGGAACTGTTTACAACTATAGGACTTCTGGGATGCAGTTCTGTGTTAAAATGT


CTGCTGTGGAGGGAATCTGCACTTCGGAAAGCCCAGTCATTGATCATCAGGGCACAAAGTCCTCCAAATG


TGTGCGCCAGAAAGTAGAGGGCTCCTCCAGTCACTTGGTGACATTCACTGTGCTTCCTCTGGAAATTGGC


CTTCACAACATCAATTTTTCACTGGAGACTTGGTTTGGAAAAGAAATCTTAGTAAAAACATTACGAGTGG


TGCCAGAAGGTGTCAAAAGGGAAAGCTATTCTGGTGTTACTTTGGATCCTAGGGGTATTTATGGTACCAT


TAGCAGACGAAAGGAGTTCCCATACAGGATACCCTTAGATTTGGTCCCCAAAACAGAAATCAAAAGGATT


TTGAGTGTAAAAGGACTGCTTGTAGGTGAGATCTTGTCTGCAGTTCTAAGTCAGGAAGGCATCAATATCC


TAACCCACCTCCCCAAAGGGAGTGCAGAGGCGGAGCTGATGAGCGTTGTCCCAGTATTCTATGTTTTTCA


CTACCTGGAAACAGGAAATCATTGGAACATTTTTCATTCTGACCCATTAATTGAAAAGCAGAAACTGAAG


AAAAAATTAAAAGAAGGGATGTTGAGCATTATGTCCTACAGAAATGCTGACTACTCTTACAGTGTGTGGA


AGGGTGGAAGTGCTAGCACTTGGTTAACAGCTTTTGCTTTAAGAGTACTTGGACAAGTAAATAAATACGT


AGAGCAGAACCAAAATTCAATTTGTAATTCTTTATTGTGGCTAGTTGAGAATTATCAATTAGATAATGGA


TCTTTCAAGGAAAATTCACAGTATCAACCAATAAAATTACAGGGTACCTTGCCTGTTGAAGCCCGAGAGA


ACAGCTTATATCTTACAGCCTTTACTGTGATTGGAATTAGAAAGGCTTTCGATATATGCCCCCTGGTGAA


AATCGACACAGCTCTAATTAAAGCTGACAACTTTCTGCTTGAAAATACACTGCCAGCCCAGAGCACCTTT


ACATTGGCCATTTCTGCGTATGCTCTTTCCCTGGGAGATAAAACTCACCCACAGTTTCGTTCAATTGTTT


CAGCTTTGAAGAGAGAAGCTTTGGTTAAAGGTAATCCACCCATTTATCGTTTTTGGAAAGACAATCTTCA


GCATAAAGACAGCTCTGTACCTAACACTGGTACGGCACGTATGGTAGAAACAACTGCCTATGCTTTACTC


ACCAGTCTGAACTTGAAAGATATAAATTATGTTAACCCAGTCATCAAATGGCTATCAGAAGAGCAGAGGT


ATGGAGGTGGCTTTTATTCAACCCAGGACACCATCAATGCCATTGAGGGCCTGACGGAATATTCACTCCT


GGTTAAACAACTCCGCTTGAGTATGGACATCGATGTTTCTTACAAGCATAAAGGTGCCTTACATAATTAT


AAAATGACAGACAAGAATTTCCTTGGGAGGCCAGTAGAGGTGCTTCTCAATGATGACCTCATTGTCAGTA


CAGGATTTGGCAGTGGCTTGGCTACAGTACATGTAACAACTGTAGTTCACAAAACCAGTACCTCTGAGGA


AGTTTGCAGCTTTTATTTGAAAATCGATACTCAGGATATTGAAGCATCCCACTACAGAGGCTACGGAAAC


TCTGATTACAAACGCATAGTAGCATGTGCCAGCTACAAGCCCAGCAGGGAAGAATCATCATCTGGATCCT


CTCATGCGGTGATGGACATCTCCTTGCCTACTGGAATCAGTGCAAATGAAGAAGACTTAAAAGCCCTTGT


GGAAGGGGTGGATCAACTATTCACTGATTACCAAATCAAAGATGGACATGTTATTCTGCAACTGAATTCG


ATTCCCTCCAGTGATTTCCTTTGTGTACGATTCCGGATATTTGAACTCTTTGAAGTTGGGTTTCTCAGTC


CTGCCACTTTCACAGTTTACGAATACCACAGACCAGATAAACAGTGTACCATGTTTTATAGCACTTCCAA


TATCAAAATTCAGAAAGTCTGTGAAGGAGCCGCGTGCAAGTGTGTAGAAGCTGATTGTGGGCAAATGCAG


GAAGAATTGGATCTGACAATCTCTGCAGAGACAAGAAAACAAACAGCATGTAAACCAGAGATTGCATATG


CTTATAAAGTTAGCATCACATCCATCACTGTAGAAAATGTTTTTGTCAAGTACAAGGCAACCCTTCTGGA


TATCTACAAAACTGGGGAAGCTGTTGCTGAGAAAGACTCTGAGATTACCTTCATTAAAAAGGTAACCTGT


ACTAACGCTGAGCTGGTAAAAGGAAGACAGTACTTAATTATGGGTAAAGAAGCCCTCCAGATAAAATACA


ATTTCAGTTTCAGGTACATCTACCCTTTAGATTCCTTGACCTGGATTGAATACTGGCCTAGAGACACAAC


ATGTTCATCGTGTCAAGCATTTTTAGCTAATTTAGATGAATTTGCCGAAGATATCTTTTTAAATGGATGC


TAAAATTCCTGAAGTTCAGCTGCATACAGTTTGCACTTATGGACTCCTGTTGTTGAAGTTCGTTTTTTTG


TTTTCTTCTTTTTTTAAACATTCATAGCTGGTCTTATTTGTAAAGCTCACTTTACTTAGAATTAGTGGCA


CTTGCTTTTATTAGAGAATGATTTCAAATGCTGTAACTTTCTGAAATAACATGGCCTTGGAGGGCATGAA


GACAGATACTCCTCCAAGGTTATTGGACACCGGAAACAATAAATTGGAACACCTCCTCAAACCTACCACT


CAGGAATGTTTGCTGGGGCCGAAAGAACAGTCCATTGAAAGGGAGTATTACAAAAACATGGCCTTTGCTT


GAAAGAAAATACCAAGGAACAGGAAACTGATCATTAAAGCCTGAGTTTGCTTTC (SEQ ID NO: 6696)


 


gi|189944|gb|L05144.1|HUMPHOCAR Homo sapiens (clone lamda-hPEC-3)


phosphoenolpyruvate carboxykinase (PCK1) mRNA, complete cds


TGGGAACACAAACTTGCTGGCGGGAAGAGCCCGGAAAGAAACCTGTGGATCTCCCTTCGAGATCATCCAA


AGAGAAGAAAGGTGACCTCACATTCGTGCCCCTTAGCAGCACTCTGCAGAAATGCCTCCTCAGCTGCAAA


ACGGCCTGAACCTCTCGGCCAAAGTTGTCCAGGGAAGCCTGGACAGCCTGCCCCAGGCAGTGAGGGAGTT


TCTCGAGAATAACGCTGAGCTGTGTCAGCCTGATCACATCCACATCTGTGACGGCTCTGAGGAGGAGAAT


GGGCGGCTTCTGGGCCAGATGGAGGAAGAGGGCATCCTCAGGCGGCTGAAGAAGTATGACAACTGCTGGT


TGGCTCTCACTGACCCCAGGGATGTGGCCAGGATCGAAAGCAAGACGGTTATCGTCACCCAAGAGCAAAG


AGACACAGTGCCCATCCCCAAAACAGGCCTCAGCCAGCTCGGTCGCTGGATGTCAGAGGAGGATTTTGAG


AAAGCGTTCAATGCCAGGTTCCCAGGGTGCATGAAAGGTCGCACCATGTACGTCATCCCATTCAGCATGG


GGCCGCTGGGCTCACCTCTGTCGAAGATCGGCATCGAGCTGACGGATTCGCCCTACGTGGTGGCCAGCAT


GCGGATCATGACGCGGATGGGCACGCCCGTCCTGGAAGCACTGGGCGATGGGGAGTTTGTCAAATGCCTC


CATTCTGTGGGGTGCCCTCTGCCTTTACAAAAGCCTTTGGTCAACAACTGGCCCTGCAACCCGGAGCTGA


CGCTCATCGCCCACCTGCCTGACCGCAGAGAGATCATCTCCTTTGGCAGTGGGTACGGCGGGAACTCGCT


GCTCGGGAAGAAGTGCTTTGCTCTCAGGATGGCCAGCCGGCTGGCAGAGGAGGAAGGGTGGCTGGCAGAG


CACATGCTGATTCTGGGTATAACCAACCCTGAGGGTGAGAAGAAGTACCTGGCGGCCGCATTTCCCAGCG


CCTGCGGGAAGACCAACCTGGCCATGATGAACCCCAGCCTCCCCGGGTGGAAGGTTGAGTGCGTCGGGGA


TGACATTGCCTGGATGAAGTTTGACGCACAAGGTCATTTAAGGGCCATCAACCCAGAAAATGGCTTTTTC


GGTGTCGCTCCTGGGACTTCAGTGAAGACCAACCCCAATGCCATCAAGACCATCCAGAAGAACACAATCT


TTACCAATGTGGCCGAGACCAGCGACGGGGGCGTTTACTGGGAAGGCATTGATGAGCCGCTAGCTTCAGG


CGTCACCATCACGTCCTGGAAGAATAAGGAGTGGAGCTCAGAGGATGGGGAACCTTGTGCCCACCCCAAC


TCGAGGTTCTGCACCCCTGCCAGCCAGTGCCCCATCATTGATGCTGCCTGGGAGTCTCCGGAAGGTGTTC


CCATTGAAGGCATTATCTTTGGAGGCCGTAGACCTGCTGGTGTCCCTCTAGTCTATGAAGCTCTCAGCTG


GCAACATGGAGTCTTTGTGGGGGCGGCCATGAGATCAGAGGCCACAGCGGCTGCAGAACATAAAGGCAAA


ATCATCATGCATGACCCCTTTGCCATGCGGCCCTTCTTTGGCTACAACTTCGGCAAATACCTGGCCCACT


GGCTTAGCATGGCCCAGCACCCAGCAGCCAAACTGCCCAAGATCTTCCATGTCAACTGGTTCCGGAAGGA


CAAGGAAGGCAAATTCCTCTGGCCAGGCTTTGGAGAGAACTCCAGGGTGCTGGAGTGGATGTTCAACCGG


ATCGATGGAAAAGCCAGCACCAACGTCACGCCCATAGGCTACATCCCCAAGGAGGATGCCCTGAACCTGA


AAGGCCTGGGGCACATCAACATGATGGAGCTTTTCAGCATCTCCAAGGAATTCTGGGACAAGGAGGTGGA


AGACATCGAGAAGTATCTGGTGGATCAAGTCAATGCCGACCTCCCCTGTGAAATCGAGAGAGAGATCCTT


GCCTTGAAGCAAAGAATAAGCCAGATGTAATCAGGGCCTGAGAATAAGCCAGATGTAATCAGGGCCTGAG


TGCTTTACCTTTAAAATCATTAAATTAAAATCCATAAGGTGCAGTAGGAGCAAGAGAGGGCAAGTGTTCC


CAAATTGACGCCACCTAATAATCATCACCACACCGGGAGCAGATCTGAAGGCACACTTTGATTTTTTTAA


GGATAAGAACCACAGAACACTGGGTAGTAGCTAATGAAATTGAGAAGGGAAATCTTAGCATGCCTCCAAA


AATTCACATCCAATGCATACTTTGTTCAAATTTAAGGTTACTCAGGCATTGATCTTTTCAGTGTTTTTTC


ACTTAGCTATGTGGATTAGCTAGAATGCACACCAAAAAGATACTTGAGCTGTATATATATATGTGTGTGT


GTGTGTGTGTGTGTGTGTGTGTGCATGTATGTGCACATGTGTCTGTGTGATATTTGGTATGTGTATTTGT


ATGTACTGTTATTCAAAATATATTTAATACCTTTGGAAAATCTTGGGCAAGATGACCTACTAGTTTTCCT


TGAAAAAAAGTTGCTTTGTTATTAATATTGTGCTTAAATTATTTTTATACACCATTGTTCCTTACCTTTA


CATAATTGCAATATTTCCCCCTTACTACTTCTTGGAAAAAAATTAGAAAATGAAGTTTATAGAAAAG (SEQ ID NO: 6697)


 


gi|6679892|ref|NM_008061.1|Mus musculus glucose-6-phosphatase, catalytic


(G6pc), mRNA


AGCAGAGGGATCGGGGCCAACCGGGCTTGGACTCACTGCACGGGCTCTGCTGGCAGCTTCCTGAGGTACC


AAGGGAGGAAGGATGGAGGAAGGAATGAACATTCTCCATGACTTTGGGATCCAGTCGACTCGCTATCTCC


AAGTGAATTACCAAGACTCCCAGGACTGGTTCATCCTTGTGTCTGTGATTGCTGACCTGAGGAACGCCTT


CTATGTCCTCTTTCCCATCTGGTTCCATCTTAAAGAGACTGTGGGCATCAATCTCCTCTGGGTGGCAGTG


GTCGGAGACTGGTTCAACCTCGTCTTCAAGTGGATTCTGTTTGGACAACGCCCGTATTGGTGGGTCCTGG


ACACCGACTACTACAGCAACAGCTCCGTGCCTATAATAAAGCAGTTCCCTGTCACCTGTGAGACCGGACC


AGGAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCT


ATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCGGTGTTTGAACGTCATCTTGTGGTTGGGATTCT


GGGCTGTGCAGCTGAACGTCTGTCTGTCCCGGATCTACCTTGCTGCTCACTTTCCCCACCAGGTCGTGGC


TGGAGTCTTGTCAGGCATTGCTGTGGCTGAAACTTTCAGCCACATCCGGGGCATCTACAATGCCAGCCTC


CGGAAGTATTGTCTCATCACCATCTTCTTGTTTGGTTTCGCGCTTGGATTCTACCTGCTACTAAAAGGGC


TAGGGGTGGACCTCCTGTGGACTTTGGAGAAAGCCAAGAGATGGTGTGAGCGGCCAGAATGGGTCCACCT


TGACACTACACCCTTTGCCAGCCTCTTCAAAAACCTGGGAACCCTCTTGGGGTTGGGGCTGGCCCTCAAC


TCCAGCATGTACCGGAAGAGCTGCAAGGGAGAACTCAGCAAGTCGTTCCCATTCCGCTTCGCCTGCATTG


TGGCTTCCTTGGTCCTCCTGCATCTCTTTGACTCTCTGAAGCCCCCATCCCAGGTTGAGTTGATCTTCTA


CATCTTGTCTTTCTGCAAGAGCGCAACAGTTCCCTTTGCATCTGTCAGTCTTATCCCATACTGCCTAGCC


CGGATCCTGGGACAGACACACAAGAAGTCTTTGTAAGGCATGCAGAGTCTTTGGTATTTAAAGTCAACCG


CCATGCAAAGGACTAGGAACAACTAAAGCCTCTGAAACCCATTGTGAGGCCAGAGGTGTTGACATCGGCC


CTGGTAGCCCTGTCTTTCTTTGCTATCTTAACCAAAAGGTGAATTTTTACAAAGCTTACAGGGCTGTTTG


AGGAAAGTGTGAATGCTGGAAACTGAGTCATTCTGGATGGTTCCCTGAAGATTCGCTTACCAGCCTCCTG


TCAGATACAGAAGAGCAAGCCCAGGCTAGAGATCCCAACTGAGAATGCTCTTGCGGTGCAGAATCTTCCG


GCTGGGAAAAGGAAAAGAGCACCATGCATTTGCCAGGAAGAGAAAGAAGGATCGGGAGGAGGGAGAGTGT


TTTATGTATCGAGCAAACCAGATGCAATCTATGTCTAACCGGCTTCAGTTGTGTCTGCGTCTTTAGATAC


GACACACTCAATAATAATAATAGACCAACTAGTGTAATGAGTAGCCAGTTAAAGGCGATTAATTCTGCTT


CCAGATAGTCTCCACTGTACATAAAAGTCACACTGTGTGCTTGCATTCCTGTATGGTAGTGGTGACTGTC


TCTCACACCACCTTCTCTATCACGTCACAGTTTTCTCCTCCTCAGCCTATGTCTGCATTCCCCAGAATTC


TCCACTTGTTCCCTGGCCCTGCTGCTGGACCCTGCTGTGTCTGGTAGGCAACTGTTTGTTGGTGCTTTTG


TAGGGTTAAGTTAAACTCTGAGATCTTGGGCAAAATGGCAAGGAGACCCAGGATTCTTCTCTCCAAAGGT


CACTCCGATGTTATTTTTGATTCCTGGGGCAGAAATATGACTCCTTTCCCTAGCCCAAGCCAGCCAAGAG


CTCTCATTCTTAGAAGAAAAGGCAGCCCCTTGGTGCCTGTCCTCCTGCCTCGGCTGATTTGCAGAGTACT


TCTTCAAAAAGAAAAAAATGGTAAAGCTATTTATTAAAAATTCTTTGTTTTTTGCTACAAATGATGCATA


TATTTTCACCCACACCAAGCACTTTGTTTCTAATATCTTTGATAAGAAAACTACATGTGCAGTATTTTAT


TAAAGCAACATTTTATTTA (SEQ ID NO: 6698)


 


gi|7110682|ref|NM_011044.1|Mus musculus phosphoenolpyruvate carboxykinase


1, cytosolic (Pck1), mRNA


ACAGTTGGCCTTCCCTCTGGGAACACACCCTCGGTCAACAGGGGAAATCCGGCAAGGCGCTCAGCGATCT


CTGATCCAGACCTTCCAAAAGGAAGAAAGGTGGCACCAGAGTTCCTGCCTCTCTCCACACCATTGCAATT


ATGCCTCCTCAGCTGCATAACGGTCTGGACTTCTCTGCCAAGGTTATCCAGGGCAGCCTCGACAGCCTGC


CCCAGGCAGTGAGGAAGTTCGTGGAAGGCAATGCTCAGCTGTGCCAGCCGGAGTATATCCACATCTGCGA


TGGCTCCGAGGAGGAGTACGGGCAGTTGCTGGCCCACATGCAGGAGGAGGGTGTCATCCGCAAGCTGAAG


AAATATGACAACTGTTGGCTGGCTCTCACTGACCCTCGAGATGTGGCCAGGATCGAAAGCAAGACAGTCA


TCATCACCCAAGAGCAGAGAGACACAGTGCCCATCCCCAAAACTGGCCTCAGCCAGCTGGGCCGCTGGAT


GTCGGAAGAGGACTTTGAGAAAGCATTCAACGCCAGGTTCCCAGGGTGCATGAAAGGCCGCACCATGTAT


GTCATCCCATTCAGCATGGGGCCACTGGGCTCGCCGCTGGCCAAGATTGGTATTGAACTGACAGACTCGC


CCTATGTGGTGGCCAGCATGCGGATCATGACTCGGATGGGCATATCTGTGCTGGAGGCCCTGGGAGATGG


GGAGTTCATCAAGTGCCTGCACTCTGTGGGGTGCCCTCTCCCCTTAAAAAAGCCTTTGGTCAACAACTGG


GCCTGCAACCCTGAGCTGACCCTGATCGCCCACCTCCCGGACCGCAGAGAGATCATCTCCTTTGGAAGCG


GATATGGTGGGAACTCACTACTCGGGAAGAAATGCTTTGCGTTGCGGATCGCCAGCCGTCTGGCTAAGGA


GGAAGGGTGGCTGGCGGAGCATATGCTGATCCTGGGCATAACTAACCCCGAAGGCAAGAAGAAATACCTG


GCCGCAGCCTTCCCTAGTGCCTGTGGGAAGACTAACTTGGCCATGATGAACCCCAGCCTGCCCGGGTGGA


AGGTCGAATGTGTGGGCGATGACATTGCCTGGATGAAGTTTGATGCCCAAGGCAACTTAAGGGCTATCAA


CCCAGAAAACGGGTTTTTTGGAGTTGCTCCTGGCACCTCAGTGAAGACAAATCCAAATGCCATTAAAACC


ATCCAGAAAAACACCATCTTCACCAACGTGGCCGAGACTAGCGATGGGGGTGTTTACTGGGAAGGCATCG


ATGAGCCGCTGGCCCCGGGAGTCACCATCACCTCCTGGAAGAACAAGGAGTGGAGACCGCAGGACGCGGA


ACCATGTGCCCATCCCAACTCGAGATTCTGCACCCCTGCCAGCCAGTGCCCCATTATTGACCCTGCCTGG


GAATCTCCAGAAGGAGTACCCATTGAGGGTATCATCTTTGGTGGCCGTAGACCTGAAGGTGTCCCCCTTG


TCTATGAAGCCCTCAGCTGGCAGCATGGGGTGTTTGTAGGAGCAGCCATGAGATCTGAGGCCACAGCTGC


TGCAGAACACAAGGGCAAGATCATCATGCACGACCCCTTTGCCATGCGACCCTTCTTCGGCTACAACTTC


GGCAAATACCTGGCCCACTGGCTGAGCATGGCCCACCGCCCAGCAGCCAAGTTGCCCAAGATCTTCCATG


TCAACTGGTTCCGGAAGGACAAAGATGGCAAGTTCCTCTGGCCAGGCTTTGGCGAGAACTCCCGGGTGCT


GGAGTGGATGTTCGGGCGGATTGAAGGGGAAGACAGCGCCAAGCTCACGCCCATCGGCTACATCCCTAAG


GAAAACGCCTTGAACCTGAAAGGCCTGGGGGGCGTCAACGTGGAGGAGCTGTTTGGGATCTCTAAGGAGT


TCTGGGAGAAGGAGGTGGAGGAGATCGACAGGTATCTGGAGGACCAGGTCAACACCGACCTCCCTTACGA


AATTGAGAGGGAGCTCCGAGCCCTGAAACAGAGAATCAGCCAGATGTAAATCCCAATGGGGGCGTCTCGA


GAGTCACCCCTTCCCACTCACAGCATCGCTGAGATCTAGGAGAAAGCCAGCCTGCTCCAGCTTTGAGATA


GCGGCACAATCGTGAGTAGATCAGAAAAGCACCTTTTAATAGTCAGTTGAGTAGCACAGAGAACAGGCTA


GGGGCAAATAAGATTGGGAGGGGAAATCACCGCATAGTCTCTGAAGTTTGCATTTGACACCAATGGGGGT


TTTGGTTCCACTTCAAGGTCACTCAGGAATCCAGTTCTTCACGTTAGCTGTAGCAGTTAGCTAAAATGCA


CAGAAAACATACTTGAGCTGTATATATGTGTGTGAACGTGTCTCTGTGTGAGCATGTGTGTGTGTGTGTG


TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGCCTGTCTGTCCCATTGTCCACAGTATATTTAA


AACCTTTGGGGAAAAATCTTGGGCAAATTTGTAGCTGTAACTAGAGAGTCATGTTGCTTTGTTGCTAGTA


TGTATGTTTAAATTATTTTTATACACCGCCCTTACCTTTCTTTACATAATTGAAATTGGTATCCGGACCA


CTTCTTGGGAAAAAAATTACAAAATAAA (SEQ ID NO: 6699)









Example 6
siRNAs Decrease mRNA Levels In Vivo
Male CMV-Luc mice (8-10 weeks old) from Xenogen (Cranbury, N.J.) were administered cholesterol conjugated siRNA (see Table 16).







TABLE 16







Solutions adminstered to mice











Group
n
Injection Mix







1
7
Buffer (PBS [pH 7.4])



2
8
Cholesterol conjugated siRNA





(ALN-3001)

















TABLE 17







Test iRNA agents targeting Luciferase








siRNA
Sequence





ALN-1070
5′-GAA CUG UGU GUG AGA GGU CCU-3′



(SEQ ID NO: 6700)



3′-CG CUU GAC ACA CAC UCU CCA GGA-5′



(SEQ ID NO: 6701)


 


ALN-1000
5′-GAA CUG UGU GUG AGA GGU CCU-GS-3′



(SEQ ID NO: 6702)



3′-CG CUU GAC ACA CAC UCU CCA GGA-5′



(SEQ ID NO: 6703)


 


ALN-3000
5′-GAA CUG UGU GUG AGA GGU CCU-3′



(SEQ ID NO: 6704)



3′-Cs1Gs1 CUU GAC ACA CAC UCU CCA GGA-5′



(SEQ ID NO: 6705)


 


ALN-3001
5′-GAA CUG UGU GUG AGA GGU CCU-chol.2-3′



(SEQ ID NO: 6706)



3′-Cs1Gs1 CUU GAC ACA CAC UCU CCA GGA-5′



(SEQ ID NO: 6707)





12′ O—Me group is attached to the nucleotide and the nucleotides have phosphorothioate linkages (indicated by “s”)


2cholesterol is conjugated to the antisense strand via the linker: U-pyrroline carrier-C(O)—(CH2)5—NHC(O)-cholesterol (via cholesterol C-3 hydroxyl).






Animals were injected (tail vein) with a volume of 200-250 μl test solution containing buffer or an siRNA solution. Group 1 received buffer and group 2 received cholesterol conjugated siRNA (ALN-3001) at a dose of 50 mg/kg body weight. Twenty-two hours after injection, animals were sacrificed and livers collected. Organs were snap frozen on dry ice, then pulverized in a mortar and pestle.
For Luciferase mRNA analysis (by the QuantiGene Assay (Genospectra, Inc.; Fremont, Calif.)), approximately 10 mg of tissue powder was resuspended in tissue lysis buffer, and processed according to the manufacturer's protocol. Samples of the lysate were hybridized with probes specific for Luciferase or GAPDH (designed using ProbeDesigner software (Genospectra, Inc., Fremont, Calif.) in triplicate, and processed for luminometric analysis. Values for Luciferase were normalized to GAPDH. Mean values were plotted with error bars corresponding to the standard deviation of the Luciferase measurements.
Results indicated that the level of luciferase RNA in animals injected with cholesterol conjugated siRNA was reduced by about 70% as compared to animals injected with buffer (see FIGS. 6A and 6b).
In Vitro Activity
HeLa cells expressing luciferase were transfected with each of the siRNAs listed in Table 17. ALN-1000 siRNAs were most effective at decreasing luciferase mRNA levels ( ̃0.6 nM siRNA decreased mRNA levels to about  ̃65% the original expression level, and 1.0 nM siRNA decreased levels to about  ̃20% the original expression level); ALN-3001 siRNAs were least effective ( ̃0.6 nM siRNA had a negligible mRNA levels, and 1.0 nM siRNA decreased levels to about  ̃40% the original expression level).
Pharmacokinetics/Biodistribution
Pharmacokinetic analyses were performed in mice and rats. Test siRNA molecules were radioactively labeled with 33P on the antisense strand by splint ligation. Labeled siRNAs (50 mg/kg) were administered by tail vein injection, and plasma levels of siRNA were measured periodically over 24 hrs by scintillation counting. Cholesterol conjugated siRNA (ALN-3001) was discovered to circulate in mouse plasma for a longer period time than unconjugated siRNA (ALN-3000) (FIG. 7). RNAse protection assays indicated that cholesterol-conjugated siRNA (ALN-3001) was detectable in mouse plasma 12 hours after injection, whereas unconjugated siRNA (ALN-3000) was not detectable in mouse plasma within two hours following injection. Similar results were observed in rats.
Mouse liver was harvested at varying time points (ranging from 0.08-24 hours) following injection with siRNA, and siRNA localized to the liver was quantified. Over the time period tested, the amount of cholesterol-conjugated siRNA (ALN-3001) detected in the liver ranged from 14.3-3.55 percent of the total dose administered to the mouse. The amount of unconjugated siRNA (ALN-3000) detected in the liver was lower, ranging from 3.91-1.75 percent of the total dose administered.
Detection of siRNA in Different Tissues
Various tissues and organs (fat, heart, kidney, liver, and spleen) were harvested from two CMV-Luc mice 22 hours following injection with 50 mg/kg ALN-3001. The antisense strand of the siRNA was detected by RNAse protection assay. The liver contained the greatest concentration of siRNA ( ̃8-10 μg siRNA/g tissue); the spleen, heart and kidney contained lesser amounts of siRNA ( ̃2-7 μg siRNA/g tissue); and fat tissue contained the least amount of siRNA (< ̃1 μg siRNA/g tissue).
Glucose-6-phosphatase siRNA Detection by RNAse Protection Assay
Balbc mice were injected with U/U, 3′C/U, or 3′ C/3′ C siRNA (4 mg/kg) targeting glucose-6-phosphatase (G6Pase) (see Table 18). Administration was by hydrodynamic tail vein injection (hd) or non-hydrodynamic tail vein injection (iv), and siRNA was subsequently detected in the liver by RNAse protection assay.







TABLE 18







Test iRNA agents targeting glucose-6-phosphatase








siRNA
Description





U/U
No cholesterol; dinucleotide 3′ overhangs on sense and antisense



strands


3′C/U
dinucleotide 3′ overhangs on sense and antisense strands;



cholesterol conjugated to 3′ end of sense strand



(mono-conjugate)


3′C/3′C
dinucleotide 3′ overhangs on sense and antisense strands;



cholesterol conjugated to 3′ end of both sense and antisense



strands (bis-conjugate)









Unconjugated siRNA (U/U) delivered by hd was detected by 15 min. post-injection (the earliest determined time-point) and was still detectable in the liver 18 hours post-injection.
Delivery by normal iv administration resulted in the greatest concentration of 3′C/3′C siRNA (the bis-cholesterol-conjugate) in the liver 1 hour post injection (as compared to the mono-cholesterol-conjugate 3′C/3′U siRNA). At 18 hours post injection, 3′C/3′C siRNAs and 3′C/U siRNA were still detectable in the liver with the bis-conjugate at higher levels compared to the mono-conjugate.
While this invention has been particularly shown and described with reference to preferred embodiments thereof, it will be understood by those skilled in the art that various changes in form and details may be made therein without departing from the scope of the invention encompassed by the appended claims.

## Claims

1. An RNA agent comprising: a sense sequence having 4-12 asymmetrical 2′-O-alkyl modifications, at least 4 of which occur within the 6 terminal nucleotides of the 5′ end; and an antisense sequence having at least 4 asymmetrical phosphorothioate modifications, wherein the RNA agent comprises a multivalent galactose or a multivalent N-acetyl-galactosamine, and wherein the antisense sequence targets a human gene sequence.

2. The RNA agent of claim 1, wherein the RNA agent is at least 21 nucleotides in length, and the duplex region of the RNA agent is about 19 nucleotides in length.

3. The RNA agent of claim 1, wherein the RNA agent has a duplex region of about 19 nucleotides in length and one or two 3′ overhangs of about 2 nucleotides in length.

4. The RNA agent of claim 1, wherein the antisense sequence contains 4-20 asymmetrical phosphorothioate modifications.

5. The RNA agent of claim 1, wherein each of the 2′-O-alkyl modifications are 2′-O-methyl modifications.

6. The RNA agent of claim 1, wherein the antisense strand further comprises at least one asymmetric modification selected from the group consisting of 2′-5′-linkages, L sugars, modified sugars, nucleobasc modifications, cation groups, Zwitterionic groups, and conjugate groups.

7. The RNA agent of claim 1, wherein the sense strand has 4 asymmetrical 2′-O-alkyl modifications within the 6 terminal nucleotides of the 5′ end, and at least one 2′-O-alkyl modification in another portion of the sense strand.

8. The RNA agent of claim 7, wherein antisense strand does not contain any 2′-O-alkyl modifications, and the sense strand does not contain any phosphorothioate modifications.

9. An RNA agent comprising: a sense sequence having 4-12 asymmetrical 2′-O-alkyl modifications, at least 4 of which occur within the 6 terminal nucleotides of the 3′ end; and an antisense sequence having at least 4 asymmetrical phosphorothioate modifications, wherein the RNA agent comprises a multivalent galactose or a multivalent N-acetyl-galactosamine, and wherein the antisense sequence targets a human gene sequence.

10. The RNA agent of claim 9, wherein the RNA agent is at least 21 nucleotides in length, and the duplex region of the RNA agent is about 19 nucleotides in length.

11. The RNA agent of claim 9, wherein the RNA agent has a duplex region of about 19 nucleotides in length and one or two 3′ overhangs of about 2 nucleotides in length.

12. The RNA agent of claim 9, wherein the antisense sequence contains 4-20 asymmetrical phosphorothioate modifications.

13. The RNA agent of claim 9, wherein each of the 2′-O-alkyl modifications are 2′-O-methyl modifications.

14. The RNA agent of claim 9, wherein the antisense strand further comprises at least one asymmetric modification selected from the group consisting of 2′-5′-linkages, L sugars, modified sugars, nucleobase modifications, cation groups, Zwitterionic groups, and conjugate groups.

15. The RNA agent of claim 9, wherein the sense strand has 4 asymmetrical 2′-O-alkyl modifications within the 6 terminal nucleotides of the 3′ end, and at least one 2′-O-alkyl modification in another portion of the sense strand.

16. The RNA agent of claim 15, wherein antisense strand does not contain any 2′-O-alkyl modifications, and the sense strand does not contain any phosphorothioate modifications.

17. The RNA agent of claim 1, wherein the sense strand further comprises at least one asymmetric modification selected from the group consisting of 2′-5′-linkages, L sugars, modified sugars, nucleobase modifications, cation groups, Zwitterionic groups, and conjugate groups.

18. The RNA agent of claim 9, wherein the sense strand further comprises at least one asymmetric modification selected from the group consisting of 2′-5′-linkages, L sugars, modified sugars, nucleobase modifications, cation groups, Zwitterionic groups, and conjugate groups.