Exhibit 99.6



CERTIFICATION



I, William Larkin, certify that:



| | 1 | I have reviewed this amended
annual report on Form 40-F/A of Westport Innovations Inc.;
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| | 2. | Based on my knowledge, this
report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements
made, in light of the circumstances under which such statements were made, not misleading with respect to the period covered by
this report;
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| | 3. | Based on my knowledge, the
financial statements, and other financial information included in this report, fairly present in all material respects the financial
condition, results of operations and cash flows of the issuer as of, and for, the periods presented in this report;
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| | 4. | The issuer’s other certifying
officer(s) and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange
Act Rules 13a-15(e) and 15d-15(e)) and internal control over financial reporting (as defined in Exchange Act Rules 13a-15(f) and
15d-5(f) for the issuer and have:
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| | (a) | Designed such disclosure
controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that
material information relating to the issuer, including its consolidated subsidiaries, is made known to us by others within those
entities, particularly during the period in which this report is being prepared;
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| | (b) | Designed such internal
control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision,
to provide reasonable assurance regarding the reliability of financial reporting and the preparation of financial statements for
external purposes in accordance with generally accepted accounting principles;
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| | (c) | Evaluated the effectiveness
of the issuer’s disclosure controls and procedures and presented in this report our conclusions about the effectiveness
of the disclosure controls and procedures, as of the end of the period covered by this report based on such evaluation; and
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| | (d) | Disclosed in this report
any change in the issuer’s internal control over financial reporting that occurred during the period covered by the annual
report that has materially affected, or is reasonably likely to materially affect, the issuer’s internal control over financial
reporting; and
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| | 5. | The issuer’s other certifying
officer(s) and I have disclosed, based on our most recent evaluation of internal control over financial reporting, to the
issuer’s auditors and the audit committee of the issuer’s board of directors (or persons performing the equivalent
functions):
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| | (a) | All significant deficiencies
and material weaknesses in the design or operation of internal control over financial reporting which are reasonably likely to
adversely affect the issuer’s ability to record, process, summarize and report financial information; and
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| | (b) | Any fraud, whether or
not material, that involves management or other employees who have a significant role in the issuer’s internal control over
financial reporting.
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|Date: March 27, 2014 | By: | /s/ William Larkin                                
|-------------------- | --- | --------------------------------------------------
|                     |     | Name: William LarkinTitle: Chief Financial Officer