# Patent

## Title
Gonadotropin-releasing hormone receptor antagonists and methods relating thereto

## Abstract

GnRH receptor antagonists are disclosed that have utility in the treatment of a variety of sex-hormone related conditions in both men and women. The compounds of this invention have the structure: 



wherein n, R1a, R1b, R1c, R2a, R2b, R3, R4, R5, R6 and X are as defined herein, including stereoisomers, prodrugs and pharmaceutically acceptable salts thereof. Also disclosed are compositions containing a compound of this invention in combination with a pharmaceutically acceptable carrier, as well as methods relating to the use thereof for antagonizing gonadotropin-releasing hormone in a subject in need thereof.

## Background
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the benefit of U.S. Provisional Patent Application No. 60/485,424 filed Jul. 7, 2003, which application is incorporated herein by reference in its entirety.


STATEMENT OF GOVERNMENT INTEREST
Partial funding of the work described herein was provided by the U.S. Government under Grant No. 1-R43-HD38625 and 2R44-HD38625-02 provided by the National Institutes of Health. The U.S. Government may have certain rights in this invention.


BACKGROUND OF THE INVENTION
1. Field of the Invention
This invention relates generally to gonadotropin-releasing hormone (GnRH) receptor antagonists, and to methods of treating disorders by administration of such antagonists to a warm-blooded animal in need thereof.
2. Description of the Related Art
Gonadotropin-releasing hormone (GnRH), also known as luteinizing hormone-releasing hormone (LHRH), is a decapeptide (pGlu-His-Trp-Ser-Tyr-Gly-Leu-Arg-Pro-Gly-NH2) that plays an important role in human reproduction. GNRH is released from the hypothalamus and acts on the pituitary gland to stimulate the biosynthesis and release of luteinizing hormone (LH) and follicle-stimulating hormone (FSH). LH released from the pituitary gland is responsible for the regulation of gonadal steroid production in both males and females, while FSH regulates spermatogenesis in males and follicular development in females.
Due to its biological importance, synthetic antagonists and agonists to GNRH have been the focus of considerable attention, particularly in the context of prostate cancer, breast cancer, endometriosis, uterine leiomyoma (fibroids), ovarian cancer, prostatic hyperplasia, assisted reproductive therapy, and precocious puberty (The Lancet 358:1793–1803, 2001; Mol. Cell. Endo. 166:9–14, 2000). For example, peptidic GnRH agonists, such as leuprorelin (pGlu-His-Trp-Ser-Tyr-d-Leu-Leu-Arg-Pro-NHEt), have been used to treat such conditions. Such agonists appear to function by binding to the GnRH receptor in the pituitary gonadotropins, thereby inducing the synthesis and release of gonadotropins. Chronic administration of GnRH agonists depletes gonadotropins and subsequently down-regulates the receptor, resulting in suppression of steroidal hormones after some period of time (e.g., on the order of 2–3 weeks following initiation of chronic administration).
In contrast, GnRH antagonists are believed to suppress gonadotropins from the onset, and thus have received the most attention over the past two decades. To date, some of the primary obstacles to the clinical use of such antagonists have been their relatively low bioavailability and adverse side effects caused by histamine release. However, several peptidic antagonists with low histamine release properties have been reported, although they still must be delivered via sustained delivery routes (such as subcutaneous injection or intranasal spray) due to limited bioavailability.
In view of the limitations associated with peptidic GnRH antagonists, a number of nonpeptidic compounds have been proposed. For example, Cho et al. (J. Med. Chem. 41:4190–4195, 1998) discloses thieno[2,3-b]pyridin-4-ones for use as GnRH receptor antagonists; U.S. Pat. Nos. 5,780,437 and 5,849,764 teach substituted indoles as GnRH receptor antagonists (as do published PCTs WO 97/21704, 98/55479, 98/55470, 98/55116, 98/55119, 97/21707, 97/21703 and 97/21435); published PCT WO 96/38438 discloses tricyclic diazepines as GnRH receptor antagonists; published PCTs WO97/14682, 97/14697 and 99/09033 disclose quinoline and thienopyridine derivatives as GnRH antagonists; published PCTs WO 97/44037, 97/44041, 97/44321 and 97/44339 teach substituted quinolin-2-ones as GnRH receptor antagonists; and published PCT WO 99/33831 discloses certain phenyl-substituted fused nitrogen-containing bicyclic compounds as GnRH receptor antagonists. Recently published PCTs WO 02/066459 and WO 02/11732 disclose the use of indole derivatives and novel bicyclic and tricyclic pyrrolidine derivatives as GnRH antagonists, respectively. Other recently published PCTs which disclose compounds and their use as GnRH antagonists include WO 00/69859, WO 01/29044, WO 01/55119, WO 03/013528, WO 03/011870, WO 03/011841, WO 03/011839 and WO 03/011293.
While significant strides have been made in this field, there remains a need in the art for effective small molecule GnRH receptor antagonists. There is also a need for pharmaceutical compositions containing such GnRH receptor antagonists, as well as methods relating to the use thereof to treat, for example, sex-hormone related conditions. The present invention fulfills these needs, and provides other related advantages.
BRIEF SUMMARY OF THE INVENTION
In brief, this invention is generally directed to gonadotropin-releasing hormone (GnRH) receptor antagonists, as well as to methods for their preparation and use, and to pharmaceutical compositions containing the same. More specifically, the GnRH receptor antagonists of this invention are compounds having the following general structure (I): 



including stereoisomers, prodrugs and pharmaceutically acceptable salts thereof, wherein n, R1a, R1b, R1c, R2a, R2b, R3, R4, R5 and R6 are as defined below.

The GnRH receptor antagonists of this invention have utility over a wide range of therapeutic applications, and may be used to treat a variety of sex-hormone related conditions in both men and women, as well as a mammal in general (also referred to herein as a “subject”). For example, such conditions include endometriosis, uterine fibroids, polycystic ovarian disease, hirsutism, precocious puberty, gonadal steroid-dependent neoplasia such as cancers of the prostate, breast and ovary, gonadotrophe pituitary adenomas, sleep apnea, irritable bowel syndrome, premenstrual syndrome, benign prostatic hypertrophy, contraception and infertility (e.g., assisted reproductive therapy such as in vitro fertilization). The compounds of this invention are also useful as an adjunct to treatment of growth hormone deficiency and short stature, and for the treatment of systemic lupus erythematosis. The compounds are also useful in combination with androgens, estrogens, progesterones, and antiestrogens and antiprogestogens for the treatment of endometriosis, fibroids, and in contraception, as well as in combination with an angiotensin-converting enzyme inhibitor, an angiotensin II-receptor antagonist, or a renin inhibitor for the treatment of uterine fibroids. In addition, the compounds may be used in combination with bisphosphonates and other agents for the treatment and/or prevention of disturbances of calcium, phosphate and bone metabolism, and in combination with estrogens, progesterones and/or androgens for the prevention or treatment of bone loss or hypogonadal symptoms such as hot flashes during therapy with a GnRH agonist.
The compounds of the present invention, in addition to their GnRH receptor antagonist activity, possess a reduced interaction with the major metabolic enzymes in the liver, namely the Cytochrome P450 enzymes. This family of enzymes, which includes the subtypes CYP2D6 and CYP3A4, is responsible for the metabolism of drugs and toxins leading to their disposition from the body. Inhibition of these enzymes can lead to life-threatening conditions where the enzyme is not able to perform this function.
The methods of this invention include administering an effective amount of a GnRH receptor antagonist, preferably in the form of a pharmaceutical composition, to a mammal in need thereof. Thus, in still a further embodiment, pharmaceutical compositions are disclosed containing one or more GnRH receptor antagonists of this invention in combination with a pharmaceutically acceptable carrier and/or diluent.
These and other aspects of the invention will be apparent upon reference to the following detailed description. To this end, various references are set forth herein which describe in more detail certain background information, procedures, compounds and/or compositions, and are each hereby incorporated by reference in their entirety.


DETAILED DESCRIPTION OF THE INVENTION
As mentioned above, the present invention is directed generally to compounds useful as gonadotropin-releasing hormone (GnRH) receptor antagonists. The compounds of this invention have the following structure (I): 



or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof,

    
    
        wherein:
        
            n is 0 or 1;
            R1a, R1b and R1c are the same or different and independently hydrogen, halogen, C1-4alkyl or alkoxy, or R1a and R1b taken together form —OCH2O— or —OCH2CH2—;
            R2a and R2b are the same or different and independently hydrogen, halogen, trifluoromethyl, cyano or —SO2CH3;
            R3 is hydrogen or methyl;
            R4 is phenyl or C3-7alkyl;
            R5 is hydrogen or C1-4alkyl;
            R6 is —NR7R8;
            R7 and R8 are the same or different and independently hydrogen or C1-4alkyl optionally substituted with 1–2 hydroxy or alkoxy;
            or R7 and R8 and the nitrogen atom to which they are attached form heterocycle or substituted heterocycle;
            or R7 and the nitrogen atom to which it is attached taken together with R5 and the nitrogen atom to which it is attached form piperazine, substituted piperazine, homopiperazine or substituted homopiperazine;
            or R7 and the nitrogen atom to which it is attached taken together with 1 or more carbon(s) from the C1-6alkanediyl of X forms heterocycle or substituted heterocycle; and
        
        
    
    


X is Cl-6alkanediyl optionally substituted with from 1 to 3 C1-4alkyl groups.
As used herein, the above terms have the following meaning:
“C1-6alkyl” means a straight chain or branched, noncyclic or cyclic, unsaturated or saturated aliphatic hydrocarbon containing from 1 to 6 carbon atoms. Representative saturated straight chain alkyls include methyl, ethyl, n-propyl, n-butyl, n-pentyl, n-hexyl, and the like; while saturated branched alkyls include isopropyl, sec-butyl, isobutyl, tert-butyl, isopentyl, and the like. Representative saturated cyclic alkyls include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and the like; while unsaturated cyclic alkyls include cyclopentenyl and cyclohexenyl, and the like. Unsaturated alkyls contain at least one double or triple bond between adjacent carbon atoms (referred to as an “alkenyl” or “alkynyl”, respectively). Representative straight chain and branched alkenyls include ethylenyl, propylenyl, 1-butenyl, 2-butenyl, isobutylenyl, 1-pentenyl, 2-pentenyl, 3-methyl-1-butenyl, 2-methyl-2-butenyl, 2,3-dimethyl-2-butenyl, and the like; while representative straight chain and branched alkynyls include acetylenyl, propynyl, 1-butynyl, 2-butynyl, 1—pentynyl, 2-pentynyl, 3-methyl-1-butynyl, and the like.
“C1-4alkyl” means a straight chain or branched, noncyclic or cyclic hydrocarbon containing from 1 to 4 carbon atoms. Representative straight chain alkyls include methyl, ethyl, n-propyl, n-butyl, and the like; branched alkyls include isopropyl, sec-butyl, isobutyl, tert-butyl, and the like; while cyclic alkyls include cyclopropyl and the like.
“C3-7alkyl” means a straight chain or branched, noncyclic or cyclic hydrocarbon containing from 3 to 7 carbon atoms. Representative straight chain alkyls include n-propyl, n-butyl, n-hexyl, and the like; while branched alkyls include isopropyl, sec-butyl, isobutyl, tert-butyl, isopentyl, and the like. Representative cyclic alkyls include cyclopropyl, cyclopentyl, cyclohexyl, and the like.
“C1-6alkanediyl” means a divalent C1-6alkyl from which two hydrogen atoms are taken from the same carbon atom or from difference carbon atoms, such as —CH2—, —CH2CH2—, —CH2CH2CH2—, —CH(CH3)CH2CH2—, —CH2C(CH3)2CH2—, and the like.
“Heterocycle” means a 4- to 7-membered monocyclic, or 7- to 10-membered bicyclic, heterocyclic ring which is either saturated, unsaturated or aromatic, and which contains from 1 to 4 heteroatoms independently selected from nitrogen, oxygen and sulfur, and wherein the nitrogen and sulfur heteroatoms may be optionally oxidized, and the nitrogen heteroatom may be optionally quaternized, including bicyclic rings in which any of the above heterocycles are fused to a benzene ring. The heterocycle may be attached via any heteroatom or carbon atom. An aromatic heterocycle is referred to herein as a “heteroaryl”, and includes (but is not limited to) furyl, benzofuranyl, thiophenyl, benzothiophenyl, pyrrolyl, indolyl, isoindolyl, azaindolyl, pyridyl, quinolinyl, isoquinolinyl, oxazolyl, isooxazolyl, benzoxazolyl, pyrazolyl, imidazolyl, benzimidazolyl, thiazolyl, benzothiazolyl, isothiazolyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, cinnolinyl, phthalazinyl, oxadiazolyl, thiadiazolyl, benzisoxazolyl, triazolyl, tetrazolyl, indazolyl and quinazolinyl. In addition to the heteroaryls listed above, heterocycles also include morpholinyl, pyrrolidinonyl, pyrrolidinyl, piperidinyl, piperazinyl, and the like.
The term “substituted” as used herein means any of the above groups (i.e., alkyl, heterocycle and/or piperazine) wherein at least one hydrogen atom is replaced with a substituent. In the case of a keto substituent (“—C(═O)—”) two hydrogen atoms are replaced. When substituted one or more of the above groups are substituted, “substituents” within the context of this invention include halogen, hydroxy, cyano, nitro, amino, alkylamino, dialkylamino, alkyl, alkoxy, alkylthio, haloalkyl, aryl, arylalkyl, heteroaryl, heteroarylalkyl, heterocycle and heterocyclealkyl, as well as —NRaRb, —NRaC(═O)Rb, —NRaC(═O)NRaNRb, —NRaC(═O)ORb—NRaSO2Rb, —C(═O)Ra, —C(═O)ORa, —C(═O)NRaRb, —OC(═O)NRaRb, —ORa, —SRa, —SORa, —S(═O)2Ra, —OS(═O)2Ra and —S(═O)2ORa. In addition, the above substituents may be further substituted with one or more of the above substituents, such that the substituent substituted alky, substituted aryl, substituted arylalkyl, substituted heterocycle or substituted heterocyclealkyl. Ra and Rb in this context may be the same or different and independently hydrogen, alkyl, haloalkyl, substituted alkyl, aryl, substituted aryl, arylalkyl, substituted arylalkyl, heterocycle, substituted heterocycle, heterocyclealkyl or substituted heterocyclealkyl.
“Halogen” means fluoro, chloro, bromo or iodo, typically fluoro and chloro.
“Hydroxy” means —OH.
“Alkoxy” means —O—(C1-6alkyl).
“Cyano” means —CN.
In one embodiment, R4 is phenyl and representative GnRH antagonists of the present invention include compounds having the following structure (II). 



In another embodiment, R4 is C3-7alkyl and representative GnRH antagonists of the present invention include compounds having the following structure (III). 



In more specific embodiments of structure (III), C3-7alkyl is a straight chain or branched C3-7alkyl such as isobutyl as represented by structure (IV), or is a cyclic C3-7alkyl such as cyclohexyl as represented by structure (V): 



In another embodiment, R1a, R1b and R1c are hydrogen, alkoxy and halogen, respectively. A representative substitution pattern includes 2-halo-3-alkoxy-phenyl. Representative alkoxy groups include methoxy and ethoxy, while representative halogen moieties include fluoro and chloro.
In an alternative embodiment, R1a and R2a taken together form —OCH2O—, such as 3,4-methylene-dioxy.
In a further embodiment, R2a and R2b are hydrogen, trifluoromethyl, halogen or —SO2CH3. A representative substitution pattern includes R2a as halogen at the 2-position and R2b as trifluoromethyl, halogen or —SO2CH3 at the 6-position.
More specific embodiments of structure (I) also include those wherein n is 0, R5 is H or methyl; R6 is —COOH, and/or X is —CH2CH2—, —CH2CH2CH2— or —CH2CH2CH2CH2—.
In a still a further embodiment, R6 is hydrogen and R7 is hydrogen, methyl or ethyl.
The compounds of the present invention may be prepared by known organic synthesis techniques, including the methods described in more detail in the Examples. In general, the compounds of structure (I) above may be made by the following reaction schemes, wherein all substituents are as defined above unless indicated otherwise. 






An appropriately substituted benzonitrile may be reduced using an appropriate reagent such as borane in THF to the corresponding amine and then forms urea 1. Cyclization with a reagent such as diketene gives compound 2 which may be brominated with bromine in acetic acid, N-bromosuccinimide or other brominating agent to give compound 3. Alkylation gives compound 4 and Suzuki condensation with a boronic acid or boronic acid ester gives compound 5. Deprotection of the protected amine using a typical reagent (such as trifluoroacetic acid in methylene chloride in the case of a BOC group) gives compound 6. It is possible to alter the order of the various alkylation, bromination, deprotection and Suzuki condensation steps to give compounds of the present invention. 



Substituted phenylacetic acid ester 7 (made form the corresponding acid or purchased) and reagent such as dimethylformamide dimethylacetal are condensed to give 8. Cyclization with urea gives a compound of formula 9. Alkylation using, for example, a substituted benzyl bromide gives 10 which may be alkylated with an appropriate alkyl halide, undergo a Mitsonobu coupling reaction with an appropriate alcohol, or react with a mesylate or sulfonate to give 5. 






Compound 4 is deprotected with an appropriate agent such as trifluoroacetic acid in methylene chloride or aqueous HCl to give compound 11 which may undergo a Suzuki type condensation with an appropriate boronic acid or boronic ester to give compound 6. Compound 6 may undergo a reductive amination with an appropriately substituted aldehyde such as N-Boc-N—R7N(C0-3alkyl)CHO followed by deprotection of the protecting group with trifluoroacetic acid in methylene chloride or other appropriate reagent to give compound 12. Alternatively, compound 6 may be alkylated with an appropriate alkyl halide, undergo a Mitsonobu coupling reaction with an appropriate alcohol, or react with a mesylate or sulfonate to give compound 12. Compound 6 is alkylated with a haloalkylphthalimide to give compound 13. Deprotection with, for example, hydrazine in ethanol gives compound 14 which may be reductively aminated or alkylated to give compound 15.
The compounds of the present invention may generally be utilized as the free acid or free base. Alternatively, the compounds of this invention may be used in the form of acid or base addition salts. Acid addition salts of the free amino compounds of the present invention may be prepared by methods well known in the art, and may be formed from organic and inorganic acids. Suitable organic acids include maleic, fumaric, benzoic, ascorbic, succinic, methanesulfonic, acetic, trifluoroacetic, oxalic, propionic, tartaric, salicylic, citric, gluconic, lactic, mandelic, cinnamic, aspartic, stearic, palmitic, glycolic, glutamic, and benzenesulfonic acids. Suitable inorganic acids include hydrochloric, hydrobromic, sulfuric, phosphoric, and nitric acids. Base addition salts included those salts that form with the carboxylate anion and include salts formed with organic and inorganic cations such as those chosen from the alkali and alkaline earth metals (for example, lithium, sodium, potassium, magnesium, barium and calcium), as well as the ammonium ion and substituted derivatives thereof (for example, dibenzylammonium, benzylammonium, 2-hydroxyethylammonium, and the like). Thus, the term “pharmaceutically acceptable salt” of structure (I) is intended to encompass any and all acceptable salt forms.
In addition, prodrugs are also included within the context of this invention. Prodrugs are any covalently bonded carriers that release a compound of structure (I) in vivo when such prodrug is administered to a patient. Prodrugs are generally prepared by modifying functional groups in a way such that the modification is cleaved, either by routine manipulation or in vivo, yielding the parent compound. Prodrugs include, for example, compounds of this invention wherein hydroxy, amine or sulfhydryl groups are bonded to any group that, when administered to a patient, cleaves to form the hydroxy, amine or sulfhydryl groups. Thus, representative examples of prodrugs include (but are not limited to) acetate, formate and benzoate derivatives of alcohol and amine functional groups of the compounds of structure (I). Further, in the case of a carboxylic acid (—COOH), esters may be employed, such as methyl esters, ethyl esters, and the like.
With regard to stereoisomers, the compounds of structure (I) may have chiral centers and may occur as racemates, racemic mixtures and as individual enantiomers or diastereomers. All such isomeric forms are included within the present invention, including mixtures thereof. Furthermore, some of the crystalline forms of the compounds of structure (I) may exist as polymorphs, which are included in the present invention. In addition, some of the compounds of structure (I) may also form solvates with water or other organic solvents. Such solvates are similarly included within the scope of this invention.
The effectiveness of a compound as a GnRH receptor antagonist may be determined by various assay techniques. Assay techniques well known in the field include the use of cultured pituitary cells for measuring GnRH activity (Vale et al., Endocrinology 91:562–572, 1972) and the measurement of radioligand binding to rat pituitary membranes (Perrin et al., Mol. Pharmacol. 23:44–51, 1983) or to membranes from cells expressing cloned receptors as described below. Other assay techniques include (but are not limited to) measurement of the effects of GnRH receptor antagonists on the inhibition of GnRH-stimulated calcium flux, modulation of phosphoinositol hydrolysis, and the circulating concentrations of gonadotropins in the castrate animal. Descriptions of these techniques, the synthesis of radiolabeled ligand, the employment of radiolabeled ligand in radioimmunoassay, and the measurement of the effectiveness of a compound as a GnRH receptor antagonist follow.
Inhibition of GnRH Stimulated LH Release
Suitable GnRH antagonists are capable of inhibiting the specific binding of GnRH to its receptor and antagonizing activities associated with GnRH. For example, inhibition of GnRH stimulated LH release in immature rats may be measured according to the method of Vilchez-Martinez (Endocrinology 96:1130–1134, 1975). Briefly, twenty-five day old male Spraque-Dawley rats are administered an GnRH antagonist in saline or other suitable formulation by oral gavage, subcutaneous injection, or intravenous injection. This is followed by subcutaneous injection of 200 ng GnRH in 0.2 ml saline. Thirty minutes after the last injection, the animals are decapitated and trunk blood is collected. After centrifugation, the separated plasma is stored at −20° C. until determination of the concentrations of LH and/or FSH by radioimmunoassay (see below.)
Rat Anterior Pituitary Cell Culture Assay of GnRH Antagonists
Anterior pituitary glands are collected from 7-week-old female Sprague-Dawley rats and the harvested glands are digested with collagenase in a dispersion flask for 1.5 hr at 37° C. After collagenase digestion, the glands are further digested with neuraminidase for 9 min at 37° C. The digested tissue is then washed with 0.1% BSA/McCoy's 5A medium, and the washed cells are suspended in 3% FBS/0.1 BSA/McCoy's 5A medium and plated onto 96-well tissue culture plates at a cell density of 40,000 cells per well in 200 μl medium. The cells are then incubated at 37° C. for 3 days. For assay of an GnRH antagonist, the incubated cells are first washed with 0.1% BSA/McCoy's 5A medium once, followed by addition of the test sample plus 1 nM GnRH in 200 μl 0.1% BSA/McCoy's 5A medium in triplicate wells. Each sample is assayed at 5-dose levels to generate a dose-response curve for determination of the potency on the inhibition of GnRH stimulated LH and/or FSH release. After 4-hr incubation at 37° C., the medium is harvested and the level of LH and/or FSH secreted into the medium is determined by RIA.
Membrane Binding Assays 1
Cells stably, or transiently, transfected with GnRH receptor expression vectors are harvested, resuspended in 5% sucrose and homogenized using a polytron homogenizer (2×15 sec). Nucleii are removed by centrifugation (3000×g for 5 min.), and the supernatant is centrifuged (20,000×g for 30 min, 4° C.) to collect the membrane fraction. The final membrane preparation is resuspended in binding buffer (10 mM Hepes (pH 7.5), 150 mM NaCl, and 0.1% BSA) and stored at −70° C. Binding reactions are performed in a Millipore MultiScreen 96-well filtration plate assembly with polyethylenimine coated GF/C membranes. The reaction is initiated by adding membranes (40 μg protein in 130 ul binding buffer) to 50 μl of [125I]-labeled GnRH peptide ( ̃100,000 cpm) and 20 μl of competitor at varying concentrations. The reaction is terminated after 90 minutes by application of vacuum and washing (2×) with phosphate buffered saline. Bound radioactivity is measured using 96-well scintillation counting (Packard Topcount) or by removing the filters from the plate and direct gamma counting. Ki values are calculated from competition binding data using non-linear least squares regression using the Prism software package (GraphPad Software).
Membrane Binding Assays 2
For additional membrane binding assays, stably transfected HEK293 cells are harvested by striking tissue culture flasks against a firm surface and collected by centrifugation at 1000×g for 5 minutes. Cell pellets are resuspended in 5% sucrose and homogenized using a polytron homogenizer for two 15 second homogenization steps. Cell homogenates are then centrifuged for 5 minutes at 3000×g to remove nuclei, and the supernatant is subsequently centrifuged for 30 minutes at 44,000×g to collect the membrane fraction. The membrane pellet is resuspended in GnRH binding buffer (10 mM HEPES, pH 7.5, 150 mM NaCl and 0.1% BSA,) and aliquots are immediately snap-frozen in liquid nitrogen and stored at −80° C. Protein content of the membrane suspension is determined using the Bio-Rad protein assay kit (Bio-Rad, Hercules, Calif.).
Competitive radioligand binding assays with membrane preparations are performed in Millipore 96-well filtration plates with GF/C membrane filters which are pre-coated with 200 μl of 0.1% polyethylenimine (Sigma, St. Louis, Mo.). Prior to use, the plates are washed 3× with phosphate buffered saline solution. Membrane fraction in GnRH binding buffer (130 μl containing 25 μprotein for human and macaque receptors or 12 μl for rat receptors) are added to wells together with 20 μl of competing ligand at varying concentrations. The binding reaction is initiated by addition of radioligand (0.1 nM in 50 μl GnRH binding buffer.) The reaction is allowed to proceed for 90 min on a platform shaker at room temperature and then terminated by placing assay plate on a Millipore vacuum manifold (Millipore, Bedford, Mass.), aspirating the solvent, and washing wells twice with 200 μl ice cold phosphate buffered saline (PBS). Filters in the wells are removed and counted in a gamma counter. Ki values are calculated from each competition binding curves using non-linear least square regression and corrected for radioligand concentration using the Cheng-Prusoff equation (Prism, GraphPad Software, San Diego, Calif.) assuming a radioligand affinity of 0.5 nM. Mean Ki values are calculated from the antilog of the mean of the pKi values for each receptor ligand pair.
Membrane Binding Assays 3
Stably transfected human GNRH receptor RBL cells are grown to confluence. The medium is removed and the cell monolayer is washed once with DPBS. A solution of 0.5 mM EDTA/PBS (Ca++ Mg++ free) is added to the plate which is then incubated at 37° C. for 10 min. Cells are dislodged by gentle rapping of the flasks. The cells are collected and pelleted by centrifugation at 800 g for 10 min at 4° C. The cell pellet is then resuspended in buffer [DPBS (1.5 mM KH2PO4, 8.1 mM Na2HPO4, 2.7 mM KCl, and 138 mM NaCl) supplemented With 10 mM MgCl2, 2 mM EGTA, pH=7.4 with NaOH]. Cell lysis is then performed using a pressure cell and applying N2 at a pressure of 900 psi for 30 min at 4° C. Unbroken cells and larger debris are removed by centrifugation at 1200 g for 10 min at 4° C. The cell membrane supernatant is then centrifuged at 45,000 g and the resulting membrane pellet is resuspended in assay buffer and homogenized on ice using a tissue homogenizer. Protein concentrations are determined using the Coomassie Plus Protein Reagent kit (Pierce, Rockford, Ill.) using bovine serum albumin as a standard. The pellets are aliquoted and stored at −80° C. until use. Titration analysis using a range of protein concentrations determined the optimal protein concentration to be 15 μg per well final concentration.
UniFilter GF/C filter plates (Perkin Elmer, Boston Mass.) are pretreated with a solution of 0.5% polyethyleneimine in distilled water for 30 minutes. Filters are pre-rinsed with 200 μl per well of PBS, 1% BSA (Fraction V) and 0.01% Tween-20, pH=7.4) using a cell harvester (UniFilter-96 Filtermate; Packard). Membranes are harvested by rapid vacuum filtration and washed 3 times with 250 μl of ice-cold buffer (PBS, 0.01% Tween-20, pH=7.4). Plates are air dried, 50 μl scintillation fluid (Microscint 20; Packard) is added, and the plate is monitored for radioactivity using a TopCount NXT (Packard Instruments, IL).
Binding experiments are performed in buffer containing 10 mM HEPES, 150 mM NaCl, and 0.1% BSA, pH=7.5. Membranes are incubated with 50 μl [125I] His5, D-Tyr6 GnRH (0.2 nM final concentration) and 50 μl of small molecule competitors at concentrations ranging from 30 pM to 10 μM for a total volume in each well of 200 μl. Incubations are carried out for 2 hrs at room temperature. The reaction is terminated by rapid filtration over GF/C filters as previously described. Curve fitting is performed using Excel Fit Software (IDBS, Emeryville, Calif.). The Ki values are calculated using the method of Cheng and Prusoff (Cheng and Prusoff, 1973) using a Kd value of 0.7 nM for the radioligand which was previously determined in saturation binding experiments.
Ca++ Flux Measurement
To determine the inhibition of GnRH-stimulated calcium flux in cells expressing the human GnRH receptor, a 96-well plate is seeded with RBL cells stably transfected with the human GnRH receptor at a density of 50,000 cells/well and allowed to attach overnight. Cells are loaded for 1 hr at 37° C. in the following medium: DMEM with 20 mM HEPES, 10% FBS, 2 μM Fluo-4, 0.02% pluronic acid and 2.5 mM probenecid. Cells are washed 4 times with wash buffer (Hanks balanced salt, 20 mM HEPES, 2.5 mM probenecid) after loading, leaving 150 μl in the well after the last wash. GnRH is diluted in 0.1% BSA containing FLIPR buffer (Hanks balanced salt, 20 mM HEPES) to a concentration of 20 nM and dispensed into a 96-well plate (Low protein binding). Various concentrations of antagonists are prepared in 0.1% BSA/FLIPR buffer in a third 96-well plate. Measurement of fluorescence due to GnRH stimulated (50 μl of 20 nM, or 4 nM final) Ca++ flux is performed according to manufacturer's instructions on a FLIPR system (Molecular Devices, FLIPR384 system, Sunnyvale, Calif.) following a 1-minute incubation with 50 μl of antagonist at varying concentrations.
Phosphoinositol Hydrolysis Assay
The procedure is modified from published protocols (W. Zhou et al; J. Biol. Chem. 270(32), pp 18853–18857, 1995). Briefly, RBL cells stably transfected with human GnRH receptors are seeded in 24 well plates at a density of 200,000 cell/well for 24 hrs. Cells are washed once with inositol-free medium containing 10% dialyzed FBS and then labeled with 1 uCi/mL of [myo-3H]-inositol. After 20–24 hrs, cells are washed with buffer (140 nM NaCl, 4 mM KCl, 20 mM Hepes, 8.3 mM glucose, 1 mM MgCl2, 1 mM CaCl2 and 0.1% BSA) and treated with native GnRH peptide in the same buffer with or without various concentrations of antagonist and 10 mM LiCl for 1 hour at 37° C. Cells are extracted with 10 mM formic acid at 4° C. for 30 min and loaded on a Dowex AG1-X8 column, washed and eluted with 1 M ammonium formate and 0.1 M formic acid. The eluate is counted in a scintillation counter. Data from PI hydrolysis assay are plotted using non-linear least square regression by the Prism program (Graphpad, GraphPad Software, San Diego, Calif.), from which dose ratio is also calculated. The Schild linear plot is generated from the dose-ratios obtained in four independent experiments by linear regression, and the X-intercept is used to determine the affinity of the antagonist.
Castrate Animal Studies
Studies of castrate animals provide a sensitive in vivo assay for the effects of GnRH antagonist (Andrology 25: 141–147, 1993). GnRH receptors in the pituitary gland mediate GnRH-stimulated LH release into the circulation. Castration results in elevated levels of circulating LH due to reduction of the negative feedback of gonadal steroids resulting in enhancement of GnRH stimulated LH release. Consequently, measurement of suppression of circulating LH levels in castrated macaques can be used as a sensitive in vivo measure of GnRH antagonism. Therefore, male macaques are surgically castrated and allowed to recover for four-weeks at which point elevated levels of LH are present. Animals are then administered the test compound as an oral or i.v. dose and serial blood samples taken for measurement of LH. LH concentrations in serum from these animals can be determined by immunoassay or bioassay techniques (Endocrinology 107: 902–907, 1980).
Preparation of GnRH Radioligand
The GnRH analog is labeled by the chloramine-T method. To 10 μg of peptide in 20 μl of 0.5M sodium phosphate buffer, pH 7.6, is added 1 mCi of Na125I, followed by 22.5 μg chloramine-T in 15 μl 0.05M sodium phosphate buffer and the mixture is vortexed for 20 sec. The reaction is stopped by the addition of 60 μg sodium metabisulfite in 30 μl 0.05M sodium phosphate buffer and the free iodine is removed by passing the reaction mixture through a C-8 Sep-Pak cartridge (Millipore Corp., Milford, Mass.). The peptide is eluted with a small volume of 80% acetonitrile/water. The recovered labeled peptide is further purified by reverse phase HPLC on a Vydac C-18 analytical column (The Separations Group, Hesperia, Calif.) on a Beckman 334 gradient HPLC system using a gradient of acetonitrile in 0.1% TFA. The purified radioactive peptide is stored in 0.1% BSA/20% acetonitrile/0.1% TFA at −80° C. and can be used for up to 4 weeks.
RIA of LH and FSH
For determination of the LH levels, each sample medium is assayed in duplicates and all dilutions are done with RIA buffer (0.01M sodium phosphate buffer/0.15M NaCl/1% BSA/0.01% NaN3, pH 7.5) and the assay kit is obtained from the Nation Hormone and Pituitary Program supported by NIDDK. To a 12×75 mm polyethylene test tube is added 100 μl of sample medium diluted 1:5 or rLH standard in RIA buffer and 100 μl of [125I]-labeled rLH ( ̃30,000 cpm) plus 100 μl of rabbit anti-rLH antibody diluted 1:187,500 and 100 μl RIA buffer. The mixture is incubated at room temperature over-night. In the next day, 100 μl of goat anti-rabbit IgG diluted 1:20 and 100 μl of normal rabbit serum diluted 1:1000 are added and the mixture incubated for another 3 hr at room temperature. The incubated tubes are then centrifuged at 3,000 rpm for 30 min and the supernatant removed by suction. The remaining pellet in the tubes is counted in a gamma-counter. RIA of FSH is done in a similar fashion as the assay for LH with substitution of the LH antibody by the FSH antibody diluted 1:30,000 and the labeled rLH by the labeled rFSH.
Activity of GnRH Receptor Antagonists
Activity of GnRH receptor antagonists are typically calculated from the IC50 as the concentration of a compound necessary to displace 50% of the radiolabeled ligand from the GnRH receptor, and is reported as a “Ki” value calculated by the following equation: 



  
    K
    i
  
  =
  
    
      IC
      50
    
    
      1
      +
      
        L
        /
        
          K
          D
        
      
    
  




where L=radioligand and KD=affinity of radioligand for receptor (Cheng and Prusoff, Biochem. Pharmacol. 22:3099, 1973). GnRH receptor antagonists of this invention have a Ki of 100 μM or less. In a preferred embodiment of this invention, the GnRH receptor antagonists have a Ki of less than 10 μM, and more preferably less than 1 μM, and even more preferably less than 0.1 μM (i.e., 100 nM). To this end, all compounds specifically disclosed in the Examples have Ki's of less than 100 nM in one or more of Membrane Binding Assays 1 through 3 above.

The ability of the GnRH antagonists to inhibit the major drug metabolizing enzymes in the human liver, namely, CYP2D6 and CYP3A4, can be evaluated in vitro according to a microtiter plate-based fluorimetric method described by Crespi et al. (Anal. Biochem. 248: 188–190; 1997). AMMC (i.e., 3-[2-(N,N-Diethyl-N-methylammonium)ethyl]-7-methoxy-4-methylcoumarin) and BFC (i.e., 7-benzyloxy-4-(trifluoromethyl)coumarin) at a concentration equal to Km (that is, the concentration of substrate that produces one half of the maximal velocity) are used as marker substrates for CYP2D6 and CYP3A4, respectively. Briefly, recombinant CYP2D6 or CYP3A4 is incubated with marker substrate and NADPH generating system (consisting of 1 mM NADP+, 46 mM glucose-6-phosphate and 3 units/mL glucose-6-phosphate dehydrogenase)at 37° C., in the absence or presence of 0.03, 0.09, 0.27, 0.82, 2.5, 7.4, 22, 67 and 200 μM of a sample GnRH antagonist. Reactions are stopped by the addition of an equal volume of acetonitrile. The precipitated protein is removed by centrifugation and the clear supernatant fluid is analyzed using a microtiter plate fluorimeter. GnRH antagonists of the present invention preferably have Ki's greater than 250 nM, more preferably greater than 1 μM and most preferably greater than 5 μM.
As mentioned above, the GnRH receptor antagonists of this invention have utility over a wide range of therapeutic applications, and may be used to treat a variety of sex-hormone related conditions in both men and women, as well as mammals in general. For example, such conditions include endometriosis, uterine fibroids, polycystic ovarian disease, hirsutism, precocious puberty, gonadal steroid-dependent neoplasia such as cancers of the prostate, breast and ovary, gonadotrophe pituitary adenomas, sleep apnea, irritable bowel syndrome, premenstrual syndrome, benign prostatic hypertrophy, contraception and infertility (e.g., assisted reproductive therapy such as in vitro fertilization).
The compounds of this invention are also useful as an adjunct to treatment of growth hormone deficiency and short stature, and for the treatment of systemic lupus erythematosis.
In addition, the compounds are useful in combination with androgens, estrogens, progesterones, and antiestrogens and antiprogestogens for the treatment of endometriosis, fibroids, and in contraception, as well as in combination with an angiotensin-converting enzyme inhibitor, an angiotensin II-receptor antagonist, or a renin inhibitor for the treatment of uterine fibroids. The compounds may also be used in combination with bisphosphonates and other agents for the treatment and/or prevention of disturbances of calcium, phosphate and bone metabolism, and in combination with estrogens, progesterones and/or androgens for the prevention or treatment of bone loss or hypogonadal symptoms such as hot flashes during therapy with a GnRH antagonist.
In another embodiment of the invention, pharmaceutical compositions containing one or more GnRH receptor antagonists are disclosed. For the purposes of administration, the compounds of the present invention may be formulated as pharmaceutical compositions. Pharmaceutical compositions of the present invention comprise a GnRH receptor antagonist of the present invention and a pharmaceutically acceptable carrier and/or diluent. The GnRH receptor antagonist is present in the composition in an amount which is effective to treat a particular disorder—that is, in an amount sufficient to achieve GnRH receptor antagonist activity, and preferably with acceptable toxicity to the patient. Typically, the pharmaceutical compositions of the present invention may include a GnRH receptor antagonist in an amount from 0.1 mg to 250 mg per dosage depending upon the route of administration, and more typically from 1 mg to 60 mg. Appropriate concentrations and dosages can be readily determined by one skilled in the art.
Pharmaceutically acceptable carrier and/or diluents are familiar to those skilled in the art. For compositions formulated as liquid solutions, acceptable carriers and/or diluents include saline and sterile water, and may optionally include antioxidants, buffers, bacteriostats and other common additives. The compositions can also be formulated as pills, capsules, granules, or tablets which contain, in addition to a GnRH receptor antagonist, diluents, dispersing and surface active agents, binders, and lubricants. One skilled in this art may further formulate the GnRH receptor antagonist in an appropriate manner, and in accordance with accepted practices, such as those disclosed in Remington's Pharmaceutical Sciences, Gennaro, Ed., Mack Publishing Co., Easton, Pa. 1990.
In another embodiment, the present invention provides a method for treating sex-hormone related conditions as discussed above. Such methods include administering of a compound of the present invention to a warm-blooded animal in an amount sufficient to treat the condition. In this context, “treat” includes prophylactic administration. Such methods include systemic administration of a GnRH receptor antagonist of this invention, preferably in the form of a pharmaceutical composition as discussed above. As used herein, systemic administration includes oral and parenteral methods of administration. For oral administration, suitable pharmaceutical compositions of GnRH receptor antagonists include powders, granules, pills, tablets, and capsules as well as liquids, syrups, suspensions, and emulsions. These compositions may also include flavorants, preservatives, suspending, thickening and emulsifying agents, and other pharmaceutically acceptable additives. For parental administration, the compounds of the present invention can be prepared in aqueous injection solutions which may contain, in addition to the GnRH receptor antagonist, buffers, antioxidants, bacteriostats, and other additives commonly employed in such solutions.
The following example is provided for purposes of illustration, not limitation. In summary, the GnRH receptor antagonists of this invention may be assayed by the general methods disclosed above, while the following Examples disclose the synthesis of representative compounds of this invention.
EXAMPLES
A. HPLC Methods for Analyzing the Samples Retention Time, tR, in Minutes
Method 1—Supercritical Fluid Chromatography Mass Spectrum (SFC-MS)


    Column: 4.6×150 mm Deltabond Cyano 5 μM from Thermo-Hypersil-Keystone.
    Mobile phase: SFC grade carbon dioxide and optima grade methanol with 1 mM disodium diethylmalonate modifier.
    Temperature: 50° C.
    Pressure: 120 bar
    Flow Rate: 4.8 mL/min
    Gradient: 5% to 55% methanol over 1.7 min and hold at 55% for 0.8 min then return to 5% in 0.1 min for total run time of 2.6 min

Method 2 (HPLC-MS)

    Column: Waters ODS-AQ, 2.0×50 mm
    Mobile phase: A=water with 0.05% trifluoroacetic acid; B=acetonitrile with 0.05% trifluoroacetic acid
    Gradient: 95% A/5% B to 5% A/95% B over 13.25 min and hold 5% A/95% B over 2 min then return to 95% A/5% B over 0.25 min.
    Flow Rate: 1 mL/min
    UV wavelength: 220 and 254 nM

Method 3 (HPLC-MS)

    Column: BHK Lab ODS-O/B, 4.6×50 mm, 5 μM
    Mobile phase: A=water with 0.05% trifluoroacetic acid; B=acetonitrile with 0.05% trifluoroacetic acid
    Gradient: 95% A/5% B for 0.5 min, then to 90% A/10% B for 0.05 min. from 90% A/10% B to 5% A/95% B over 18.94 min, then to 1% A/99% B over 0.05 min and hold 1% A/99% B over 2.16 min. then return to 95%/5% B over 0.50 min.
    Flow Rate: 2.5 mL/min.
    UV wavelength: 220 and 254 nM

Method 4 (HPLC-MS)

    Column: Waters ODS-AQ, 2.0×50 mm
    Mobile phase: A=water with 0.05% trifluoroacetic acid; B=acetonitrile with 0.05% trifluoroacetic acid
    Gradient: 95% A/5% B to 10% A/90% B over 2.25 min and hold 10% A/90% B over 1.0 min then return to 95% A/5% B over 0.1 min.
    Flow Rate: 1 mL/min
    UV wavelength: 220 and 254 nM

Method 5 (HPLC)

    Column: Agilent, Zorbax SB-C18, 5 μM, 4.6×250 mm.
    Mobile phase: A=water with 0.05% trifluoroacetic acid; B=acetonitrile with 0.05% trifluoroacetic acid
    Gradient: 95% A/5% B to 5% A/95% B over 50 min, then 5% A/95% B to 1% A/99% B over 0.1 min, then hold 1% A/99% for 0.8 min and back to 95% A/5% over 0.2 min, hold such gradient for 4 min.
    Flow rate: 2.0 mL/min.
    UV wavelength: 220 and 254 nM

Method 6 (HPLC-MS)

    Column: Phenomenex Synergi 4μ Max-RP 80A, 50.0×2.0 mm
    Mobile phase: A=water with 0.025% of trifluoroacetic acid; B=acetonitrile with 0.025% of trifluoroacetic acid
    Gradient: 95% A/5% B 0.25 min, then 95% A/5% B to 95% B/5% A over 13 min, maintaining 95% A/5% B to 95% B/5% A over 2 min, then back to 95% A/5% B in 0.25 min.
    Flow Rate: 1 mL/min
    UV wavelength: 220 nM and 254 nM


Example 1
3-[2(R)-{(2-AMINO-2,2-DIMETHYLETHYL)AMINO}-2-PHENYLETHYL]-5-(2-CHLOROPHENYL)-1-[2-FLUORO-6-(TRIFLUOROMETHYL)BENZYL]-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 1A: Preparation of 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 1a

A suspension of 5-bromouracil (31.0 g) in 300 mL of dichloroethane is treated with N,O-bis(trimethylsilyl)acetamide (80 mL). The reaction mixture is heated under nitrogen. The solution is cooled to ambient temperature, 2-fluoro-6-(trifluoromethyl)benzyl bromide (50 g) is added and the reaction mixture is heated overnight under the nitrogen. The reaction is cooled, quenched with MeOH, and partitioned between dichloromethane and water. The organic layer is washed with brine, dried (sodium sulfate), and evaporated to give a solid. The crude product is triturated with ether, filtered, and washed with ether three times providing 40.7 g of 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 1a. MS (CI) m/z 366.0, 368.0 (MH+).
Step 1B: Preparation of 3-[2(R)-amino-2-phenylethyl]-5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 1b
A solution of 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 1a (19.2 g, 52.3 mmol) in THF (180 mL) was treated with N-(t-butyloxycarbonyl)-D-phenylglycinol (13.6 g, 57.5 mmol) and triphenylphosphine (20.6 g, 78.5 mmol) at room temperature, then di-tert-butylazodicarboxylate (18.0 g, 78.5 mmol) was introduced in several portions over 5 minutes. The mixture was stirred at room temperature for 16 hour, additional THF (90 mL) was added, and the mixture was heated to 50° C. Concentrated HCl (34.6 mL, 418 mmol) was added, and the reaction mixture was stirred at 50° C. for 40 hours. After dilution with ethyl acetate (100 mL), the solid was filtered, washed with additional ethyl acetate (100 mL), and dried to give compound 1b (26.9 g, 98%) as a white powder. MS (CI) m/z 485.0, 487.0 (MH+).
Step 1C: Preparation of 3-[2(R)-amino}-2-phenylethyl]-5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 1c
To compound 1b (10.45 g, 20 mmol) in dioxane/water (180/20 mL) was added 2-chlorophenylboronic acid (6.26 g, 40 mmol) and Na2CO3 (12.72 g, 120 mmol). The mixture was deoxygenated with N2 for 15 minutes, tetrakis(triphenylphosphine) palladium (0) (2.31 g, 2 mmol) was added and the reaction mixture was heated at 90° C. for 16 hours. The reaction was partitioned between EtOAc and H2O. The organic layer was washed with brine, dried over Na2SO4, concentrated and purified by column chromatography on silica gel with ethyl acetate/hexanes/triethylamine 500/500/6 to 800/200/7 to afford compound 1c (7.26 g, 70%) as a white foam. MS (CI) m/z 518.0, 520.1 (MH+).
Step 1D: Preparation of 3-[2(R)-{(2-phthalimide-2,2-dimethylethyl)amino}-2-phenylethyl]-5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 1d.
A solution of compound 1c (30 mg, 0.058 mmol) and N-(1-oxo-2,2-dimethylethyl)phthalimide (25 mg, 0.116 mmol, synthesized in 2 steps from 2-amino-2-methylpropanol, first by reaction with phthalic anhydride, followed by Swern oxidation using oxalyl chloride) in dichloroethane (1 mL) was stirred at room temperature for 5 minutes, and sodium triacetoxyborohydride (37 mg, 0.174 mmol) was added. The reaction mixture was stirred for 16 hours, and partitioned between EtOAc and 10% aq. NaOH. The organic layer was dried over Na2SO4 and concentrated to give crude compound 1d. MS (CI) m/z 719.2, 721.2 (MH+)
Step 1E: Preparation of 3-[2(R)-{(2-amino-2,2-dimethylethyl)amino}-2-phenylethyl]-5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 1-1
A solution of compound 1d (42 mg, 0.058 mmol) and hydrazine monohydrate (56 μL, 1.16 mmol) in ethanol (3 mL) was refluxed for 2 hours. After concentration, the residue was taken up in DCM and washed with 10% aq. NaOH. The organic layer was dried over Na2SO4, concentrated and purified by prep LCMS to give compound 1-1. MS (CI) m/z 589.2, 591.2 (MH+), tR=2.441 (method 4)
Example 2
3-[2(R)-{AMINO}-2-PHENYLETHYL]-5-(2-CHLOROPHENYL)-1-[2-FLUORO-6-(TRIFLUOROMETHYL)BENZYL]PYRIMIDINE-2,4(1H,3H)-DIONE




Step 2A: Preparation of Compound Methyl (2-chlorophenyl)acetate 2a

To 2-chlorophenylacetic acid (1.04 g, 6 mmol) in MeOH (25 mL) was added sulfuric acid (6 drops) and the solution was refluxed for 16 hours. After concentration, the residue was taken up in ethyl acetate and washed with sat'd aq. NaHCO3, H2O and brine. The organic layer was dried over Na2SO4 and concentrated to give methyl (2-chlorophenyl)acetate 2a (1.08 g, 97.5%) as a yellowish oil. GCMS (EI) m/z 184, 186 (M+).

Step 2B: Preparation of Methyl 2-(2-chlorophenyl)-3-(dimethylamino)acrylate 2b 



A solution of methyl (2-chlorophenyl)acetate 2a (1.08 g, 5.85 mmol) in DMFDMA (10 mL, 70.8 mmol) was refluxed for 16 hours. After evaporation, the residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 1/3 to 1/2 to afford unreacted methyl (2-chlorophenyl)acetate 2a (0.67 g, 62%) first, and then methyl 2-(2-chlorophenyl)-3-(dimethylamino)acrylate 2b (0.38 g, 27%; 71% based on recovered starting material) as a colorless syrup. MS (CI) m/z 240.2, 242.2 (MH+).
Step 2C: Preparation of 5-(2-chlorophenyl)pyrimidine-2,4(1H,3H)-dione 2c
To a mixture of methyl 2-(2-chlorophenyl)-3-(dimethylamino)acrylate 2b (0.26 g, 1.08 mmol), urea (0.2 g, 3.26 mmol) and NaI (0.49 g, 3.26 mmol) in acetonitrile (5 mL) was added TMSCl (0.41 mL, 3.26 mmol). The resulting mixture was refluxed for 16 hours, cooled to room temperature, and 1.0 M NaOH (8 mL) was added. The resultant solution was stirred for 20 hr, and acetonitrile was removed in vacuo. The aq. solution was washed with ether, cooled in ice bath, and neutralized with 1 N HCl (8 mL). The precipitate was filtered, washed with additional H2O, and dried to give 5-(2-chlorophenyl)pyrimidine-2,4(1H,3H)-dione 2c (0.16 g, 66%) as a white solid. MS (CI) m/z 222.9, 224.9 (MH+).
Step 2D: Preparation of 5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)-benzyl]pyrimidine-2,4(1H,3H)-dione 2d
To a suspension of 5-(2-chlorophenyl)pyrimidine-2,4(1H,3H)-dione 2c (0.16 g, 0.72 mmol) in acetonitrile (5 mL) was added bis(trimethylsilyl)acetamide (0.36 mL, 1.44 mmol), and the resulting solution was refluxed for 1.5 hours. After cooling to room temperature, 2-fluoro-3-trifluoromethylbenzyl bromide (0.22 g, 0.86 mmol) was added, and reflux was resumed for 16 hours. The reaction was quenched by addition of MeOH (5 mL) and stirring for 2 hours. After concentration, the residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 1/1 to afford 5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 2d (0.25 g, 87%) as a white solid. MS (CI) m/z 398.9, 400.9 (MH+).
Step 2E: Preparation of 3-[2(R)-{tert-butoxycarbonyl-amino}-2-phenylethyl]-5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 2e
A mixture of 5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 2d (125 mg, 0.32 mmol), K2CO3 (130 mg, 0.96 mmol) and N-(t-butyloxycarbonyl)-D-α-phenylglycinol mesylate (0.2 g, 0.64 mmol) in DMF (3 mL) was heated at 75° C. for 16 hours. The reaction was diluted with ethyl acetate, washed with H2O and brine, dried over Na2SO4 and concentrated. The residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 2/3 to afford compound 2e (144 mg, 74%). MS (CI) m/z 518.0, 520.0 (MH+-Boc).
Step 2F: Preparation of 3-[2(R)-amino-2-phenylethyl]-5-(2-chlorophenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-pyrimidine-2,4(1H,3H)-dione 1c
To a solution of compound 2e (0.144 g, 0.23 mmol) in DCM (1 mL) was added TFA (0.5 mL, 6.5 mmol) and the mixture was stirred at room temperature for 1.5 hours. After concentration, the residue was taken up in DCM and sat'd aq. NaHCO3 was added. The aq. layer was extracted with DCM. Combined organic extracts were dried over Na2SO4 and concentrated to give compound 1c (0.12 g). MS (CI) m/z 518.0, 520.1 (MH+).
Example 3
3-[2(R)-{AMINOPROPYLAMINO}-2-PHENYLETHYL]-5-(2-CHLORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-(TRIFLUOROMETHYL)BENZYL]PYRIMIDINE-2,4(1H,3H)-DIONE




Step 3A: Preparation of 2-chloro-3-methoxybenzaldehyde 3a

To a suspension of 3-hydroxybenzaldehyde (20.12 g, 160 mmol) in HOAc (40 mL) was added carefully tBuOCl (20 mL, 176 mmol) with stirring. The reaction became a clear solution and strongly exothermic. It was allowed to cool and stirred for 16 hours, resulting in a white precipitate. The solid was filtered, washed with H2O and dried to give 2-chloro-3-hydroxybenzaldehyde (13.77 g, 55%), GCMS (EI) m/z 156, 158 (M+).
To a solution of 2-chloro-3-hydroxybenzaldehyde (4.55 g, 29 mmol) in DMF (30 mL) was added K2CO3 (4.8 g, 34.9 mmol) followed by MeI (2.7 mL, 43.6 mmol), and the mixture was stirred at room temperature for 16 hours. Following concentration in vacuo, the residual was taken up in ethyl acetate, washed with H2O, brine, dried over Na2SO4, and concentrated. Purification by column chromatography on silica gel with ethyl acetate/hexanes 1/5 afforded 2-chloro-3-methoxybenzaldehyde 3a (4.68 g, 94%) as a colorless oil, which solidified upon standing. GCMS (EI) m/z 170, 172 (M+).
Step 3B: Preparation of 2-chloro-1-methoxy-3-[2-(methylsulfanyl)-2-(methylsulfinyl)vinyl]benzene 3b
To a solution of 2-chloro-3-methoxybenzaldehyde 3a (4.65 g, 27.3 mmol) and methyl (methylthio)methyl sulfoxide (4.3 mL, 43.9 mmol) in THF (25 mL) was added a 40% methanolic solution of Triton B (6.2 mL, 13.6 mmol) and the resulting solution was refluxed for 16 hours. After THF was removed, the residue was taken up in ethyl acetate, washed with 1 N HCl, H2O, and brine, then was dried over Na2SO4, and concentrated. Purification by column chromatography on silica gel with dichloromethane afforded 2-chloro-1-methoxy-3-[2-(methylsulfanyl)-2-(methylsulfinyl)vinyl]benzene 3b (3.61 g, 48%) as a yellow oil. GCMS (EI) m/z 225 (M+—Cl-16), 210 (M+—Cl—OMe).
Step 3C: Preparation of Ethyl (2-chloro-3-methoxyphenyl)acetate 3c
To a solution of 2-chloro-1-methoxy-3-[2-(methylsulfanyl)-2-(methylsulfinyl)vinyl]benzene 3b (3.58 g, 12.9 mmol) in ethanol (20 mL) was added a 5 M ethanolic solution of HCl (5.2 mL) and the resulting solution was refluxed for 3 hours. After evaporation, the residue was purified by column chromatography on silica gel with dichloromethane to afford ethyl (2-chloro-3-methoxyphenyl)acetate 3c (2.78 g, 94%) as a yellow oil. GCMS (EI) m/z 228, 230 (M+).
Step 3D: Preparation of Ethyl 2-(2-chloro-3-methoxyphenyl)-3-(dimethylamino)acrylate 3d
A solution of ethyl (2-chloro-3-methoxyphenyl)acetate 3c (2.78 g, 12 mmol) in DMFDMA (16 mL, 120 mmol) was refluxed for 16 hours. After evaporation, the residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 1/2 to 1/1 to afford unreacted ethyl (2-chloro-3-methoxyphenyl)acetate 3c (1.8 g, 65%) first, and then ethyl 2-(2-chloro-3-methoxyphenyl)-3-(dimethylamino)acrylate 3d (1.1 g, 32%; 90% based on recovered starting material) as a yellow syrup. MS (CI) m/z 284.0, 286.0 (MH+).
Step 3E: Preparation of 5-(2-chloro-3-methoxyphenyl)pyrimidine-2,4(1H,3H)-dione 3e
To a mixture of ethyl 2-(2-chloro-3-methoxyphenyl)-3-(dimethylamino)acrylate 3d (1.7 g, 6 mmol), urea (1.08 g, 18 mmol) and NaI (2.7 g, 18 mmol) in acetonitrile (20 mL) was added TMSCl (2.3 mL, 18 mmol). The resulting mixture was refluxed for 16 hours, cooled to room temperature, and 1.0 M NaOH (30 mL) was added. The resultant solution was stirred for 20 hours, and acetonitrile was removed in vacuo. The aq. solution was washed with ether, cooled in ice bath, and neutralized with 1 N HCl (30 mL). The precipitate was filtered, washed with additional H2O, and dried to give 5-(2-chloro-3-methoxyphenyl)pyrimidine-2,4(1H,3H)-dione 3e (1.24 g, 82%) as a pale yellow solid. MS (CI) m/z 253.1, 255.1 (MH+).
Step 3F: Preparation of 5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3f
To a suspension of 5-(2-chloro-3-methoxyphenyl)pyrimidine-2,4(1H,3H)-dione 3e (2.2 g, 8.7 mmol) in acetonitrile (25 mL) was added bis(trimethylsilyl)acetamide (4.3 mL, 17.4 mmol), and the resulting solution was refluxed for 1.5 hours. The mixture was cooled to room temperature, 2-fluoro-3-trifluoromethylbenzyl bromide (2.7 g, 10.5 mmol) was added, and reflux was resumed for 16 hours. The reaction was quenched by addition of MeOH (25 mL) and stirring for 2 hours. After concentration, the residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 1/1 to afford 5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3f (3.3 g, 88%) as a white solid. MS (CI) m/z 429.0, 431.0 (MH+).
Step 3G: Preparation of 3-[2(R)-(tert-butoxycarbonylamino)-2-phenylethyl]-5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3g
A mixture of 5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3f (75 mg, 0.175 mmol), K2CO3 (72 mg, 0.525 mmol) and N-(t-butyloxycarbonyl)-D-α-phenylglycinol mesylate (0.11 g, 0.35 mmol) in DMF (2 mL) was heated at 75° C. for 16 hours. The reaction was diluted with ethyl acetate, washed with H2O and brine, dried over Na2SO4 and concentrated. The residue was purified by column chromatography on silica gel with ethyl acetate/hexanes 2/3 to afford compound 3g (82 mg, 72%) as a white solid. MS (CI) m/z 548.0, 550.0 (MH+-Boc).
Step 3H: Preparation of 3-[2(R)-amino-2-phenylethy]-5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3h
Compound 3g (2.7 g, 4.2 mmol) was dissolved in dichloromethane (10 mL), TFA (14 mL, 175 mmol) was added, and the mixture was stirred at room temperature for 4.5 hours. After concentration, the residue was taken up in DCM and sat'd aq. NaHCO3 was added. The aq. layer was extracted with DCM. Combined organic extracts were dried over Na2SO4 and concentrated to give compound 3h (2.2 g, 96%). MS (CI) m/z 548.0, 550.0 (MH+).
3-[2(R)-amino-2-phenylethyl]-5-(2-chloro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]pyrimidine-2,4(1H,3H)-dione 3h.1 was prepared by substitution of the appropriate starting material using the procedures provided above.
Step 3I: Preparation of 3-[2(R)-{phthalimidopropylamino}-2-phenylethyl]-5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3i
A mixture of compound 3h (30 mg, 0.055 mmol), K2CO3 (23 mg, 0.165 mmol) and N-(3-bromopropyl)phthalimide (30 mg, 0.11 mmol) in DMF (2 mL) was heated at 75° C. for 16 hours. The reaction mixture was diluted with ethyl acetate, washed with H2O and brine, dried over Na2SO4 and concentrated. The residue was purified on prep TLC plate eluting with ethyl acetate/hexanes 1/1 to afford compound 3-i (20 mg, 50%). MS (CI) m/z 735.1, 737.1 (MH+).
Step 3J: Preparation of 3-[2(R)-{aminopropylamino}-2-phenylethyl]-5-(2-chloro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]pyrimidine-2,4(1H,3H)-dione 3-1
A solution of compound 3i (20 mg, 0.027 mmol) and hydrazine monohydrate (26 μL, 0.54 mmol) in ethanol (3 mL) was refluxed for 2 hours. After concentration, the residue was taken up in DCM and washed with 10% aq. NaOH, The organic layer was dried over Na2SO4, concentrated and purified by prep LCMS to give compound 3-1. MS (CI) m/z 605.1, 607.1 (MH+), tR=1.500 (method 1)
Example 4
3-[2(R)-{AMINOETHYLAMINO}-2-PHENYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2,6-DIFLUOROBENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 4A: Preparation of 2-fluoro-6-(trifluoromethyl)benzylamine 4a

To 2-fluoro-6-(trifluoromethyl)benzonitrile (45 g, 0.238 mmol) in 60 mL of THF was added 1 M BH3: THF slowly at 60° C. and the resulting solution was refluxed overnight. The reaction mixture was cooled to ambient temperature. Methanol (420 mL) was added slowly and stirred well. The solvents were then evaporated and the residue was partitioned between EtOAc and water. The organic layer was dried over Na2SO4. Evaporation gave 4a as a yellow oil (46 g, 0.238 mmol). MS (CI) m/z 194.0 (MH+).
Step 4B: Preparation of N-[2-fluoro-6-(trifluoromethyl)benzyl]urea 4b
To 2-fluoro-6-(trifluoromethyl)benzylamine 4a (51.5 g, 0.267 mmol) in a flask, urea (64 g, 1.07 mmol), HCl (conc., 30.9 mmol, 0.374 mmol) and water (111 mL) were added. The mixture was refluxed for 6 hours. The mixture was cooled to ambient temperature, further cooled with ice and filtered to give a yellow solid. Recrystallization with 400 mL of EtOAc gave 4b as a white solid (46.2 g, 0.196 mmol). MS (CI) m/z 237.0 (MH+).
Step 4C: Preparation of 1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methylpyrimidine-2,4(1H,3H)-dione 4c
NaI (43.9 g, 293 mmol) was added to N-[2-fluoro-6-(trifluoromethyl)benzyl]urea 4b (46.2 g, 19.6 mmol) in 365 mL of acetonitrile. The resulting mixture was cooled in an ice-water bath. Diketene (22.5 mL, 293 mmol) was added slowly via dropping funnel followed by addition of TMSCl (37.2 mL, 293 mmol) in the same manner. The resulting yellow suspension was allowed to warm to room temperature slowly and was stirred for 20 hours. LC-MS showed the disappearance of starting material. To the yellow mixture 525 mL of water was added and stirred overnight. After another 20 hours stirring, the precipitate was filtered via Buchnner funnel and the yellow solid was washed with water and EtOAc to give 4c as a white solid (48.5 g, 16 mmol). 1H NMR (CDCl3) δ 2.152 (s, 3H), 5.365 (s, 2H), 5.593 (s, 1H), 7.226–7.560 (m, 3H), 9.015 (s, 1H); MS (CI) m/z 303.0 (MH+).
Step 4D: Preparation of 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methylpyrimidine-2,4(1H,3H)-dione 4d
Bromine (16.5 mL, 0.32 mmol) was added to 1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methylpyrimidine-2,4(1H,3H)-dione 4c (48.5 g, 0.16 mol) in 145 mL of acetic acid. The resulting mixture became clear then formed precipitate within an hour. After 2 hours stirring, the yellow solid was filtered and washed with cold EtOAc to an almost white solid. The filtrate was washed with sat.NaHCO3 and dried over Na2SO4. Evaporation gave a yellow solid which was washed with EtOAC to give a light yellow solid. The two solids were combined to give 59.4 g of 4d (0.156 mol) total. 1H NMR (CDCl3) δ 2.422 (s, 3H), 5.478 (s, 2H), 7.246–7.582 (m, 3H), 8.611 (s, 1H); MS (CI) m/z 380.9 (MH+).
5-Bromo-1-[2,6-difluorobenzyl]-6-methylpyrimidine-2,4(1H,3H)-dione 4d.1 was made using the same procedure.
Step 4E: Preparation of 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-3-[2(R)-tert-butoxycarbonylamino-2-phenylethyl]-pyrimidine-2,4(1H,3H)-dione 4e
To 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methylpyrimidine-2,4(1H,3H)-dione 4d (15 g, 39.4 mmol) in 225 mL of THF were added N-t-Boc-D-phenylglycinol (11.7 g, 49.2 mmol) and triphenylphosphine (15.5 g, 59.1 mmol), followed by addition of di-tert-butyl azodicarboxylate (13.6 g, 59.1 mmol). The resulting yellow solution was stirred overnight. The volatiles were evaporated and the residue was purified by silica gel with 3:7 EtOAc/Hexane to give 4e as a white solid (23.6 g, 39.4 mmol). MS (CI) m/z 500.0 (MH+-Boc).
Step 4F: Preparation of 3-[2(R)-amino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 4f
To 5-bromo-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-3-[2(R)-tert-butoxycarbonylamino-2-phenylethyl]-pyrimidine-2,4(1H,3H)-dione 4e (15 g, 25 mmol) in 30 mL/90 mL of H2O/dioxane in a pressure tube were added 2-fluoro-3-methoxyphenylboronic acid (4.25 g, 25 mmol) and sodium carbonate (15.75 g, 150 mmol). N2 gas was bubbled through for 10 min. Tetrakis(triphenylphosphine)palladium (2.9 g, 2.5 mmol) was added, the tube was sealed and the resulting mixture was heated at 90° C. overnight. After cooling to ambient temperature, the precipitate was removed by filtration. The volatiles were removed by evaporation and the residue was partitioned between EtOAc/sat. NaHCO3. The organic solvent was evaporated and the residue was chromatographed with 2:3 EtOAc/Hexane to give 13.4 g (20.8 mmol, 83%) yellow solid.
This yellow solid(6.9 g, 10.7 mmol) was dissolved in 20 mL/20 mL CH2Cl2/TFA. The resulting yellow solution was stirred at room temperature for 2 hours. The volatiles were evaporated and the residue was partitioned between EtOAc/sat. NaHCO3. The organic phase was dried over Na2SO4. Evaporation gave 4f as a yellow oil (4.3 g, 7.9 mmol, 74%). 1H NMR (CDCl3) δ 2.031 (s, 3H), 3.724–4.586 (m, 6H), 5.32–5.609 (m, 2H), 6.736–7.558 (m, 11H); MS (CI) m/z 546.0 (MH+).
3-[2(R)-amino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 4f.1 was made using the same procedure described in this example.
Step 4G: Preparation of 3-[2(R)-{(tert-butoxycarbonyl)aminoethyl}amino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 4g
To a solution of compound 4f.1 (3.1 g, 6.2 mmol) in dichloromethane (50 mL) was added a solution of tert-butyl N-(2-oxoethyl)-carbamate (0.98 g, 6.2 mmol) in dichloromethane (10 mL) dropwise. The reaction mixture was stirred at room temperature for 30 minutes before addition of sodium triacetoxyborohydride (2.0 g, 9.2 mmol). The reaction mixture was stirred at room temperature overnight. The reaction mixture was partitioned between ethyl ether and water and the organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated. The residue was purified by flash chromatography on silica gel eluting with 50% ethyl acetate in hexane to yield 4g as a pale yellow semi-solid (2.3 g, 3.6 mmol, 59%). MS (CI) m/z 639.1 (M+H+), tR=2.342 min. (method 4). 1H NMR (CDCl3): 1.40 (s, 9H), 2.16 (s, 3H), 2.40–2.60 (m, 2H), 3.04–3.08 (m, 2H), 3.90 (s, 3H), 3.99–4.16 (m, 2H), 4.25–4.36 (m, 1H), 4.94 (brs, 1H), 5.20–5.40 (m, 2H), 6.74–7.00 (m, 3H), 7.11 (dd, 1H), 7.21–7.35 (m, 7H).
Step 4H: Preparation of 3-[2(R)-aminoethylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 4-1
To a solution of compound 4g (1.0 g, 1.6 mmol) in dichloromethane (10 mL) was added trifluoroacetic acid (TFA, 5 mL). The reaction mixture was stirred at room temperature for 4 hours. The reaction mixture was concentrated, and partitioned between ethyl acetate and diluted aqueous NaOH solution. The organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated to yield 4-1 as a tan oil (0.75 g, 1.4 mmol, 89%). MS (CI) m/z=539.1 (M+H+), tR=1.969 min. (method 4). 1H NMR (CDCl3): δ 2.16 (brs, 3H), 2.36–2.68 (m, 4H), 3.90 (s, 3H), 4.01–4.13 (m, 2H), 4.25–4.35 (m, 1H), 5.18–5.39 (m, 2H), 6.72–6.83 (m, 1H), 6.88–7.00 (m, 2H), 7.08–7.15 (m, 1H), 7.20–7.37 (m, 7H).
Example 5
3-[2(R)-{2-PROPYLAMINO-ETHYLAMINO}-2-PHENYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-METHYLSULFONYLBENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 5A: Preparation of 3-[2(R)-{2-propylamino-ethylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione

3-[2(R)-{2-amino-ethylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 7-12 (200 mg, 0.33 mmol) was dissolved in methanol (5 mL) and a solution of propionaldehyde (29 mg, 0.5 mmol) in methanol (3 mL) was added dropwise. After stirring for 15 minutes, borane-pyridine (8M, 42 μL) was added and the reaction mixture was stirred overnight. The reaction mixture was concentrated and the residue purified by silica gel chromatography, eluting with methylene chloride/methanol and gradually some ammonium hydroxide. Compound 5-1 was isolated (50 mg). MS (CI) m/z 641.3 (M+H+), tR=2.149 min. (method 4)
Example 6
3-[2(R)-AMINOPROPYLAMINO-2-PHENYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-METHYLSULFONYLBENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 6A: Preparation of 3-[2(R)-tert-butoxycarbonylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6a

To a solution of compound 4f.1 (28 g, 56 mmol) in dichloromethane (200 mL) was added a solution of di-tert-butyldicarbonate (12 g, 56 mmol) in dichloromethane (100 mL) dropwise through an addition funnel. The reaction mixture was stirred at room temperature for 2 hours and LC/MS indicated the starting material was consumed. The reaction mixture was concentrated by vacuum to yield the desired product 6a as a light yellow solid (33 g). MS (CI) m/z 496.1 (M+H+-Boc), tR=3.052 min (method 4)
Step 6B: Preparation of 3-[2(R)-tert-butoxycarbonylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylthiobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6b
To a solution of compound 6a (33 g, 56 mmol) in dry DMSO (100 mL) was added sodium thiomethoxide (4.0 g, 56 mmol) under nitrogen. The reaction mixture was heated to 100° C. under nitrogen for 1 hour. Another 0.28 eq. of sodium thiomethoxide (1.1 g, 16 mmmol) was added, and the reaction mixture was heated to 100° C. under nitrogen for 1 hour. The reaction mixture was cooled and partitioned between ethyl ether and water. The organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated. The crude product was purified with a flash chromatography on silica gel eluted with 50% ethyl acetate in hexane to yield compound 6b as a pale yellow solid (27 g, 44 mmol, 78%). MS (CI) m/z 524.1 (M+H+-Boc), tR=3.134 min. (method 4). 1H NMR (CDCl3): δ 1.38 (s, 9H), 2.07 (s, 3H), 2.51 (s, 3H), 3.90 (s, 3H), 4.07–4.13 (m, 1H), 4.29–4.39 (m, 1H), 5.30–5.53 (m, 2H), 5.79–5.85 (m, 1H), 6.80–6.91 (m, 2H), 6.70 (dd, 1H), 7.06–7.15 (m, 2H), 7.22–7.41 (m, 6H).
Step 6C: Preparation of 3-[2(R)-tert-butoxycarbonylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6c
To a solution of compound 6b (27 g, 44 mmol) in anhydrous dichloromethane (400 mL) was added 3-chloroperoxybenzoic acid (mCPBA, 30 g, 180 mmol). The reaction mixture was stirred at room temperature overnight. The reaction mixture was partitioned between dichloromethane and water. The organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated. The crude product was purified with a by chromatography on silica gel eluting with 50% ethyl acetate in hexane to yield the desired product compound 6c as a pale yellow solid (15 g, 24 mmol, 53%). MS (CI) m/z 556.0 (M+H+-Boc), tR=2.941 min. (method 4). 1H NMR (CDCl3): δ 1.38 (s, 9H), 2.27 (brs, 3H), 3.48 (s, 3H), 3.92 (s, 3H), 4.01–4.15 (m, 1H), 4.24–4.40 (m, 1H), 4.95–5.05 (m, 1H), 5.58–5.68 (m, 2H), 6.85–6.91 (dd, 1H), 7.02 (dd, 1H), 7.14 (d, J=7.6 Hz, 1H), 7.19–7.55 (m, 7H), 7.97 (d, J=7.6 Hz, 1H).
Step 6D: Preparation of 3-[2(R)-amino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6d
To a solution of compound 6c (10 g, 15 mmol) in anhydrous dichloromethane (60 mL) was added trifluroacetic acid (TFA, 16 mL). The reaction mixture was stirred at room temperature for 4 hours. The reaction mixture was concentrated, and partitioned between ethyl acetate and diluted aqueous NaOH solution. The organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated to yield 6d as a tan solid (8.0 g, 14 mmol, 94%). MS (CI) m/z 556.2 (M+H+), tR=2.354 min. (method 4). 1H NMR (CDCl3): δ 2.25 (s, 3H), 3.42 (s, 1.5H), 3.43 (s, 1.5H), 3.91 (s, 1.5H), 3.92 (s, 1.5H), 3.98–4.22 (m, 2H), 4.33–4.38 (m, 1H), 5.60 (brs, 2H), 6.80–6.89 (m, 1H), 6.97–7.03 (m, 1H), 7.11–7.17 (m, 1H), 7.22–7.37 (m, 6H), 7.46–7.54 (m, 1H), 7.95 (dd, 1H).
Step 6E: Preparation of 3-[2(R)-{phthalimidopropylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6e
To a solution of compound 6d (4.0 g, 7.2 mmol) in anhydrous DMF (8 mL) was added sodium carbonate (0.76 g, 7.2 mmmol) and N-(3-bromopropyl)phthalimide (2.4 g, 9.0 mmmol). The reaction mixture was heated to 80° C. under nitrogen for 4 hr. The reaction mixture was cooled and partitioned between dichloromethane and water. The organic layer was washed with saturated aqueous sodium bicarbonate solution and brine, dried with sodium sulfate, filtered and concentrated. The residue was purified by flash chromatography on silica gel, eluting with dichloromethane, 50% ethyl acetate in hexane and then ethyl acetate to yield 6e as a pale yellow solid (3.6 g, 4.9 mmol, 67%). MS (CI) m/z 743.1 (M+H+), tR=2.539 min. (method 4). 1H NMR (CDCl3): δ 1.62–1.70 (m, 2H), 2.26 (s, 1.5H), 2.27 (s, 1.5H), 2.29–2.33 (m, 1H), 2.40–2.48 (m, 1H), 3.51 (s, 1.5H), 3.52 (s, 1.5H), 3.54–3.74 (m, 2H), 3.90 (s, 1.5H), 3.91 (s, 1.5H), 3.93–4.26 (m, 3H), 5.60 (brs, 2H), 6.80–6.89 (m, 1H), 6.99 (dd, 1H), 7.11–7.36 (m, 8H), 7.42–7.49 (m, 1H), 7.71–7.75 (m, 2H), 7.84–7.89 (m, 1H), 7.95 (d, J=8.4 Hz, 1H).
Step 6F: Preparation of 3-[2(R)-aminopropylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6-1
To a solution of compound 6e (2.5 g, 3.4 mmol) in dry ethanol (20 mL) was added anhydrous hydrazine (0.22 g, 6.8 mmol). The reaction mixture was heated to 80° C. under nitrogen for 4 hr. The reaction mixture was cooled, and the white precipitate was filtered off. The filtrate was concentrated and purified by flash chromatography on silica gel, eluting with 50% MeOH in CH2Cl2 and then MeOH/CH2Cl2/NH3OH 15:150:1 to yield 6-1 as a white solid (1.7 g, 2.7 mmol, 79%). MS (CI) m/z 613.2 (M+H+), tR=2.359 min. (method 4). 1H NMR (CDCl3): δ 1.45–1.53 (m, 2H), 2.24 (s, 1.5H), 2.25 (s, 1.5H), 2.38–2.48 (m, 2H), 2.68 (t, 2H), 3.42 (s, 1.5H), 3.43 (s, 1.5H), 3.92 (s, 3H), 3.95–4.06 (m, 2H), 4.12–4.19 (m, 1H), 5.55 (brs, 2H), 6.76–6.86 (m, 1H), 7.00 (dd, 1H), 7.11–7.36 (m, 7H), 7.47–7.54 (m, 1H), 7.95 (d, J=7.8 Hz, 1H).
Step 6G: Preparation of 3-[2(R)-aminopropylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 6-1.HCl
To a solution of compound 6-1 (1.2 g, 2.0 mmol) in dichloromethane (10 mL) was added hydrogen chloride 1N solution in ether (2.0 mL, 2.0 mmol). The reaction mixture was stirred at room temperature for 30 minutes and concentrated to yield a sticky solid. The crude product was triturated with ether for 1 hr. The white solid was collected by filtration and rinsed with ether, dried by vacuum. The product 6-1.HCl, a mono-HCl salt, was obtained as a white solid (1.1 g, 1.7 mmol, 84%). MS (CI) m/z 613.2 (M+H+), tR=2.383 min. (method 4).
The following compounds were synthesized according to the above procedure.
















 

















tR



No.
R2a
MW
MH+
(method)

















6-1
—SO2Me
612.7
613.2
6.890 (3)



6-2
—Cl
569.0
569.3
5.195 (2)










Example 7
The following compounds were generally synthesized according to the procedures of Example 6 from the appropriate starting materials and N-(2-bromoethyl)phthalimide optionally followed by the procedure of Example 5.
















 



























tR


No.
R1a
R1b
R2a
R2b
R3
R5
XR6
Mass
MW
(method)




















7-1
Cl
H
F
CF3
H
H
CH2CH2NH2
560.7
570.0
4.460 (3)


7-2
Cl
H
F
SO2Me
H
H
CH2CH2NH2
570.8
571.1
4.020 (3)


7-3
F
OMe
F
F
Me
Me
CH2CH2NMe2
581.1
580.7
5.461 (2)


7-4
F
OMe
F
F
Me
H
CH2CH2NMe2
567.0
566.6
2.630 (4)


7-5
F
OMe
F
F
Me
H
CH2CH2NEt2
595.1
594.7
5.144 (2)


7-6
F
OMe
F
F
Me
H
CH2CH2NHpropyl
581.0
580.7
5.114 (2)


7-7
F
OMe
F
F
Me
H
CH2CH2NCHMe2
581.1
580.7
7.250 (3)


7-8
F
OMe
F
F
H
H
CH2CH2NH2
525.0
524.5
4.442 (2)


7-9
Cl
H
F
F
H
H
CH2CH2NH2
511.2
511.0
6.820 (3)


7-10
F
OMe
F
F
Me
H
CH2CH2NHCH2CH2OH
583.0
582.6
7.280 (3)


7-11
F
OMe
F
SO2Me
Me
Me
CH2CH2NMe2
641.0
640.7
5.185 (2)


7-12
F
OMe
F
SO2Me
Me
H
CH2CH2NH2
598.9
598.7
3.990 (3)


7-13
F
OMe
F
SO2Me
Me
H
CH2CH2NHCHMe2
641.2
640.8
1.609 (1)


7-14
F
OMe
F
SO2Me
Me
H
CH2CH2NHCH2cyclopropyl
653.2
652.8
1.584 (1)


7-15
F
OMe
F
SO2Me
Me
H
CH2CH2N(CH2CH2OH)2
687.2
686.8
1.517 (1)


7-16
F
OMe
F
SO2Me
Me
H
CH2CH2NHCH2CH2OH
643.2
642.7
1.468 (1)


7-17
F
OMe
F
SO2Me
Me
H
CH2CH2morpholinyl
669.3
668.8
5.069 (2)


7-18
F
OMe
F
CF3
H
H
CH2CH2NH2
575.2
574.6
1.398 (1)


7-19
F
OMe
F
CF3
Me
H
CH2CH2NH2
589.2
588.6
1.362 (1)









Example 8
5-(2-FLUORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-METHYLSULFONYLBENZYL]-3-{3-(1-PIPERAZINYL)-2(R)-PHENYLPROPYL}-6-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE




Step 8A: Preparation of 5-bromo-1-[2,6-difluorobenzyl]-3-{3-acetoxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8a

A solution of acetic acid 3-hydroxy-2-(R)-phenyl-propyl ester (1.87 g, 9.64 mmol) in THF (50 mL) was treated with 5-bromo-1-(2,6-difluorobenzyl)-6-methyluracil 4d.1 (3.19 g, 9.64 mmol) and triphenylphosphine (3.16 g, 12.1 mmol) at ambient temperature, then di-tert-butylazodicarboxylate (2.77 g, 12.1 mmol) was introduced. The reaction mixture was stirred at ambient temperature for 16 h and volatiles were evaporated. The residue was partitioned between saturated NaHCO3/H2O and EtOAc. The organic layer was dried (sodium sulfate), evaporated, purified by flash chromatography (silica, 33% EtOAc/hexanes) to give compound 8a (4.54 g, 93%). MS (CI) m/z 508.1 and 509.0 (MH+).
Step 8B: Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-3-{3-hydroxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8b
To compound 8a (4.05 g, 8 mmol) in dioxane/water (100/50 mL) was added 2-fluoro-3-methoxyphenylboronic acid (2.04 g, 12 mmol) and Na2CO3 (5.08 g, 48 mmol). The reaction mixture was deoxygenated with N2 for 10 min, tetrakis(triphenylphosine) palladium (0) (924 mg, 0.8 mmol) was added and the reaction mixture was heated at 100° C. overnight under the protection of N2. The reaction mixture was partitioned between brine and EtOAc. The organic layer was dried (sodium sulfate), evaporated and purified by flash chromatography (silica, 50% EtOAc/hexanes) to give compound 8b (2.73 g, 66.9%). MS (CI) m/z 511.1 (MH+).
Step 8B.1: Alternative Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-3-{3-hydroxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8b
To L-hyoscyamine hydrochloride (7.5 g, 23 mmol) in dichloromethane (50 mL) was added pyridium p-toluenesulfonate (578 mg, 2.3 mmol), followed by a slow addition of 3,4-dihydro-2H-pyrane (2.3 mL, 1.1 eq). The mixture was stirred at room temperature overnight. The mixture was cooled by ice bath, sat. NaHCO3 (40 mL) was added, followed by addition of 40 mL of dichloromethane. The organic layer was separated and washed with brine, dried over Na2SO4, then concentrated to give a syrup [MS (CI) m/z 374.0 (MH+); tR=2.086 (Method 4)] which was dissolved in THF (20 mL) and then added dropwise to an ice bath cooled solution of THF (50 mL) which contained lithium aluminum hydride (1.75 g, 2.0 eq) maintaining the reaction temperature below 10° C. Once the addition was complete, the reaction was stirred at room temperature for 4 hours, cooled to 0–5° C. and 8 N NaOH aqueous solution was added until no bubbles were generated. After stirring at room temperature for 1 hour, the mixture was filtered through a pad of approx. 100 g of Na2SO4. THF was removed by evaporation and the resulting oil was redissolved in ethyl acetate (150 mL), washed with 1N HCl (30 mL×2), NaHCO3 solution (30 mL), brine (30 mL), dried over Na2SO4 and evaporated to give 4.2 g of the THP protected alcohol as an oil. tR=2.354 (method 4)
To the THP protected alcohol (0.945 g, 4 mmol) in THF was added 4d.1 (1.311 g, 1.0 eq), followed by addition of Ph3P (1.311 g, 1.25 eq) and di-tert butyl azodicarboxylate (1.15 g, 1.25 eq). The mixture was stirred at room temperature overnight. The mixture was then concentrated and purified by flash column chromatography to give 5-bromo-1-[2,6-difluorobenzyl]-3-{3-(2-tetrahydro-2H-pyranyloxy)-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione [MS (CI) m/z 464.9 & 466.9 (MH+−THP); tR=2.782 (method 4)]. 5-Bromo-1-[2,6-difluorobenzyl]-3-{3-(2-tetrahydro-2H-pyranyloxy)-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione (110 mg) was treated with 1N HCl (10 mL)/MeOH (10 mL) at room temperature for 1 hour. The reaction mixture was concentrated and purified by prep TLC plate to yield 5-bromo-1-[2,6-difluorobenzyl]-3-{3-hydroxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione. MS (CI), m/z 464.9 & 466.9 (MH+); tR=2.613 (method 4). Suzuki coupling with 2-fluoro-3-methoxyphenylboronic acid by the procedure of Step 8B gave compound 8b.
Step 8C: Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylthiobenzyl]-3-{3-hydroxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8c
To a solution of 8b (2.55 g, 5 mmol) in DMF (2 mL) was added NaSMe (420 mg, 6 mmol) and the reaction mixture was heated at 105° C. overnight. Volatiles were evaporated and the residue was partitioned between brine and EtOAc. The organic layer was dried (sodium sulfate) and evaporated to give 8c (2.58 g, 96%). MS (CI) m/z 539.50 (MH+).
Step 8D: Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-3-{3-hydroxy-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8d
Oxone (4.61 g, 7.5 mmol) was dissolved in water (20 mL) and saturated NaHCO3/H2O was added until the mixture was basic. A solution of 8c (1.35 g, 2.5 mmol) in acetone (20 mL) was added and the reaction mixture was stirred at room temperature for 3 hr. The reaction mixture was filtered, and the filtrate was evaporated to give 8d (1.31 g, 92%). MS (CI) m/z 571.30 (MH+).
Step 8E: Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-3-{2(R)-phenylpropyl-3-one}-6-methylpyrimidine-2,4(1H,3H)-dione 8e
A solution of 8d (1.14 g, 2 mmol) in dichloromethane (20 mL) was added Dess-Martin periodinane (933 mg, 2.2 mmol), and the reaction mixture was stirred at room temperature for 2 hr. The reaction mixture was filtered, and the filtrate was partitioned between saturated NaHCO3/H2O and dichloromethane. The organic layer was dried (sodium sulfate), evaporated to give 8e (1.12 g, 98.6%). MS (CI) m/z 569.5 (MH+).
Step 8F: Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-3-{3-(1-piperazinyl)-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8-1
A solution of 8e (568 mg, 1 mmol) in dichloroethane (10 mL) was added 1-Boc-piperazine (392 mg, 2 mmol), then NaBH(OAc)3 (636 mg, 3 mmol) was added. The reaction mixture was stirred at room temperature for 2 hr. The reaction mixture was partitioned between saturated NaHCO3/H2O and DCM. The organic layer was dried (sodium sulfate) and evaporated. This crude intermediate was treated with 1:1 TFA/DCM (15 mL) at r.t. for 1 hr. The reaction mixture was evaporated, and then purified by reverse phase HPLC (C-18 column, 15–75% ACN/water) to give compound 8-1 (542 mg, 85%). MS (CI) m/z 639.1 (MH+), tR=4.960 min (method 2)
Step 8G: Alternative Preparation of 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-3-{3-(1-piperazinyl)-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione 8-1
To 8d (280 mg, 0.50 mmol) in anhydrous acetonitrile (5 mL) was added triethylamine (76 mg, 0.75 mmol) followed by addition of methanesulfonyl chloride (85 mg, 58 uL, 0.75 mmol). The reaction mixture was stirred for 10 minutes. Anhydrous acetonitrile (5 mL) and triethylamine (76 mg, 0.75 mmol) were added followed by addition of piperazine (430 mg, 5.0 mmol). The reaction mixture was refluxed for 30 minutes and HPLC showed starting material remained. Piperazine (420 mg, 5.0 mmol) was added and the reaction mixture was refluxed overnight. The reaction mixture was concentrated, then partitioned between EtOAc and brine. The EtOAc layer was dried with sodium sulfate, filtered, concentrated and purified on silica gel (10 mL), first eluting with 5% MeOH—CH2Cl2 then with 15:150:1 MeOH/CH2Cl2/NH4OH, Like fractions were collected and evaporated to give 8-1 as a colorless oil (190 mg, 0.3 mmol, 60%). 1H NMR (CDCl3): δ 2.20 (s, 1.5H), 2.22 (s, 1.5H), 2.20–2.30 (m, 2H), 2.41–2.60 (m, 2H), 2.69–2.76 (m, 1H), 2.76–2.90 (m, 4H), 3.41 (s, 1.5H), 3.44 (s, 1.5H), 3.48–3.60 (m, 2H), 3.91 (s, 1.5H), 3.92 (s, 1.5H), 4.09–4.16 (m, 1H), 4.24–4.31 (m, 1H), 5.20–5.50 (m, 2H), 6.80–6.73 (m, 0.5H), 6.78–6.83 (m, 0.5H), 6.99 (dd, 1H), 7.09–7.20 (m, 6H), 7.26–7.33 (m, 1H), 7.46–7.53 (m, 1H), 7.91–7.96 (m, 1H).
The following compounds were synthesized according to the above procedure.
















 















tR


No.
—N(R5)XR6
MW
MH+
(method)














8-1




638.73
639.0
4.766 (6)


 


8-2




666.79
667.1
4.655 (6)


 


8-3




638.73
639.0
4.350 (6)









Example 9
3-[2(R)-{(2-DIMETHYLAMINO)ETHYLAMINO}-2-PHENYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-(TRIFLUOROMETHYL)BENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 9A: 3-[2(R)-{(2-dimethylamino)ethylamino-}2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione

To a mixture of compound 4f (0.42 g, 0.72 mmol) in anhydrous methanol (5 mL) was added 2-dimethylaminoethyl chloride hydrochloride (0.21 g, 1.44 mmol), sodium bicarbonate (0.30 g, 3.6 mmol) and sodium iodide (0.11 g, 0.72 mol). The reaction mixture was heated at 70° C. in a sealed reaction vessel overnight. The reaction mixture was cooled, filtered and purified by Prep LC. The fractions with pure product were dried with Speed-vac for 2 days, dissolved with D.I. water, combined and lypholized to yield the 9-1 as a di-TFA salt (0.049 g, 0.058 mmol, 8.1%).
The following compounds were synthesized according to the above procedure.
















 

















tR


No.
R2a
XR6
MW
MH+
(method)















9-1
—CF3
—CH2CH2N(CH3)2
616.3
617.1
5.619 (2)


9-2
—SO2Me
—CH2CH2N(CH3)2
626.7
627.3
4.840 (2)


9-3
—SO2Me
—CH2CH2CH2N(CH3)2
640.8
641.3
4.800 (2)


9-4
—CF3
—CH2CH2CH2N(CH3)2
630.7
631.2
4.922 (2)









Example 10
3-[2(R)-{(2-METHYLAMINO)ETHYLAMINO}-2-PHENYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2-FLUORO-6-(TRIFLUOROMETHYL)BENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 10A: 3-[2(R)-{(2-methylamino)ethylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione

N-(Tert-butoxycarbonyl)-N-methylethanolamine (26 mg, 0.15 mmol) was dissolved in methylene chloride (3 mL) and Dess-Martin periodane (42 mg, 0.1 mmol) was added. Afer 30 minutes, compound 4f (55 mg, 0.1 mmol) was added. Sodium triacetoxyborohydride (212 mg, 1 mmol) was added and the reaction mixture was stirred at room temperature for 1 hour. The reaction mixture was concentrated and the residue was dissolved in methanol (2 mL) and purified via LCMS. Pure fractions were combined and concentrated to give an oil which was dissolved in methylene chloride/trifluoroacetic acid (2 mL, 1:1). After 3 hours, the solvent was removed giving 10-14 1 (15 mg) as the di-trifluoroacetic acid salt. MS (CI) m/z 603.2 (MH+).
The following compounds were synthesized according to the above procedure.
















 

















tR



No.
R2a
MW
MH+
(method)

















10-1
—CF3
602.6
603.2
5.460 (2)



10-2
—SO2Me
612.7
613.2
1.516 (1)










Example 11
3-[2(R)-AMINO-2-CYCLOHEXYLETHYL]-5-(2-FLUORO-3-METHOXYPHENYL)-1-[2,6-DIFLUOROBENZYL]-6-METHYL-PYRIMIDINE-2,4(1H,3H)-DIONE




Step 11A: Preparation of tert-butyl 1-cyclohexyl-2-hydroxyethylcarbamate 11a

A solution of N-(t-butyloxycarbonyl)cyclohexylglycine (2.0 g, 7.77 mmol) in anhydrous THF (10 mL) was cooled to 0° C. Borane solution (1 M in THF, 15.5 mL, 15.5 mmol) was added slowly and the reaction mixture was warmed to room temperature and stirred for 2 hours. The reaction was quenched with MeOH (5 mL), volatiles were evaporated and the residue was partitioned between water and EtOAc. The organic layer was washed with saturated NaHCO3/water, brine, dried (sodium sulfate), and evaporated to give tert-butyl 1-cyclohexyl-2-hydroxyethylcarbamate 11a (1.26 g, 66.7%), MS (CI) m/z 144.2 (MH+−Boc).
Step 11B: Preparation of 5-bromo-3-[2(R)-tert-butoxycarbonylamino-2-cyclohexylethyl]-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 11b
A solution of tert-butyl 1-cyclohexyl-2-hydroxyethylcarbamate 11a (638 mg, 2.62 mmol) in THF (10 mL) was treated with 5-bromo-1-(2,6-difluorobenzyl)-6-methylpyrimidine-2,4(1H,3H)-dione 4d.1 (869 mg, 2.62 mmol) and triphenylphosphine (1.03 g, 3.93 mmol) at ambient temperature, then di-tert-butylazodicarboxylate (906 mg, 3.93 mmol) was introduced. The reaction mixture was stirred at ambient temperature for 16 hours and volatiles were evaporated. The residue was partitioned between saturated NaHCO3/H2O and EtOAc. The organic layer was dried (sodium sulfate), evaporated, and purified by flash chromatography (silica, 25% EtOAc/hexanes) to give compound 11b (1.39 g, 95.4%). MS (CI) m/z 456.1, 458.1 (MH+−Boc).
Step 11C: Preparation of 3-[2(R)-tert-butoxycarbonylamino-2-cyclohexylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 11c
5-Bromo-3-[2(R)-tert-butoxycarbonylamino-2-cyclohexylethyl]-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione 11b (1.0 g, 1.79 mmol) in bezene/EtOH/ethylene glycol dimethyl ether (20/2/22 mL) was added 2-fluoro-3-methoxyphenylboronic acid (382 mg, 2.24 mmol) and saturated Ba(OH)2/water ( ̃0.5 M, 15 mL). The reaction mixture was deoxygenated with N2 for 10 minutes, tetrakis(triphenylphosphine) palladium (0) (208 mg, 0.18 mmol) was added and the reaction mixture was heated at 80° C. overnight under N2. The reaction mixture was partitioned between brine and EtOAc. The organic layer was dried (sodium sulfate), evaporated, and purified by flash chromatography (silica, 30% EtOAc/hexanes) to give compound 11c (348 mg, 32.3%). MS (CI) m/z 502.2 (MH+−Boc).
Step 11D: Preparation of 3-[2(R)-amino-2-cyclohexylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2,6-difluorobenzyl]-6-methyl-pyrimidine-2,4(1H,3H-dione 11d
To compound 11c (300 mg, 0.5 mmol) in dichloromethane (2 mL) was added TFA (2 mL) and the reaction mixture was stirred at ambient temperature for 1 hour. Volatiles were evaporated and the residue was partitioned between saturated NaHCO3/water and EtOAc. The organic layer was dried (sodium sulfate), evaporated, purified by reverse phase HPLC (C-18 column, 15–75% ACN/water) to give compound 11d. MS (CI) m/z 502.2 (MH+).
It will be appreciated that, although specific embodiments of the invention have been described herein for purposes of illustration, various modifications may be made without departing from the spirit and scope of the invention. Accordingly, the invention is not limited except as by the appended claims.

## Claims

1. A compound having the following structure: 



or a stereoisomer or pharmaceutically acceptable salt thereof,
wherein:
n is 0 or 1;
R1a, R1b and R1c are the same or different and independently hydrogen, halogen, C1-4alkyl or alkoxy, or R1a and R1b taken together form —OCH2O— or —OCH2CH2—;
R2a and R2b are the same or different and independently hydrogen, halogen, trifluoromethyl, cyano or —SO2CH3;
R3 is hydrogen or methyl;
R4 is phenyl or C3-7alkyl;
R5 is hydrogen or C1-4alkyl;
R6 is —NR7R8;
R7 and R8 are the same or different and independently hydrogen or C1-4alkyl optionally substituted with 1–2 hydroxy or alkoxy;
or R7 and R8 and the nitrogen atom to which they are attached form heterocycle or substituted heterocycle;
or R7 and the nitrogen atom to which it is attached taken together with R5 and the nitrogen atom to which it is attached form piperazine, substituted piperazine, homopiperazine or substituted homopiperazine;
or R7 and the nitrogen atom to which it is attached taken together with 1 or more carbon(s) from the C1-6alkanediyl of X forms heterocycle or substituted heterocycle; and
X is C1-6alkanediyl optionally substituted with from 1 to 3 C1-4alkyl groups.

2. The compound of claim 1 wherein R1a is halogen.

3. The compound of claim 1 wherein R1b is alkoxy.

4. The compound of claim 3 wherein R1b is methoxy.

5. The compound of claim 1 wherein R1c is hydrogen or halogen.

6. The compound of claim 5 wherein R1c is fluoro or chloro.

7. The compound of claim 1 wherein R2a is halogen.

8. The compound of claim 1 wherein R2b is trifluoromethyl, halogen or —SO2CH3.

9. The compound of claim 1 wherein R3 is hydrogen.

10. The compound of claim 1 wherein R3 is methyl.

11. The compound of claim 1 wherein R4 is phenyl.

12. The compound of claim 1 wherein R4 is C3-7alkyl.

13. The compound of claim 12 wherein C3-7alkyl is cyclopentyl or cyclohexyl.

14. The compound of claim 1 wherein R5 is hydrogen or methyl.

15. The compound of claim 1 wherein n is 0.

16. The compound of claim 1 wherein n is 1.

17. The compound of claim 1 wherein R6 is hydrogen and R7 is hydrogen or methyl.

18. The compound of claim 1 wherein R7 and R8 and the nitrogen atom to which they are attached form a heterocycle.

19. The compound of claim 1 wherein X is a straight chain C1-6alkanediyl.

20. The compound of claim 19 wherein the straight chain Cl-6alkanediyl is —CH2CH2CH2—.

21. The compound of 1 wherein X is a branched C1-6alkanediyl.

22. The compound of claim 1 wherein n is 1 and R7 and the nitrogen atom to which it is attached taken together with R5 and the nitrogen atom to which it is attached form piperazine.

23. The compound of claim 1 wherein the compound is 3-[2(R)-aminopropylamino-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione, 5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-3-{3-(1-piperazinyl)-2(R)-phenylpropyl}-6-methylpyrimidine-2,4(1H,3H)-dione, or 3-[2(R)-{(2-dimethylamino)ethylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione.

24. The compound of claim 1 wherein the compound is 3-[2(R)-{(2-dimethylamino)propylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-methylsulfonylbenzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione, 3-[2(R)-{(2-dimethylamino)propylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione, or 3-[2(R)-{(2-methylamino)ethylamino}-2-phenylethyl]-5-(2-fluoro-3-methoxyphenyl)-1-[2-fluoro-6-(trifluoromethyl)benzyl]-6-methyl-pyrimidine-2,4(1H,3H)-dione.

25. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable carrier or diluent.

26. A method for treating breast cancer in a subject in need thereof comprising administering to the subject an effective amount of a compound of claim 1.

27. A method for treating prostate cancer in a subject in need thereof comprising administering to the subject an effective amount of a compound of claim 1.

28. The method for treating endometriosis in a subject in need thereof comprising administering to the subject an effective amount of a compound of claim 1.