UNITED
STATESSECURITIES AND EXCHANGE COMMISSIONWashington,
D.C. 20549

_________________

FORM
10-Q



_________________

þ   QUARTERLY
REPORT PURSUANT TO SECTION 13 OR 15(d)OF THE SECURITIES EXCHANGE ACT OF 1934

For
the quarterly period ended: September 30, 2012

or

o     TRANSITION
REPORT PURSUANT TO SECTION 13 OR 15(d)OF THE SECURITIES EXCHANGE ACT OF 1934

For
the transition period from: ______ to ______

_________________





Arrayit
corporation, INC.

(Exact
name of registrant as specified in its charter)



_________________

|Nevada                            | 001-16381    | 79-0600966         
|--------------------------------- | ------------ | -------------------
|(State or Other Jurisdiction      | (Commission  | (I.R.S. Employer   
|of Incorporation or Organization) | File Number) | Identification No.)

524 East Weddell Drive Sunnyvale, CA 94089(Address
of Principal Executive Offices) (Zip Code)

(408) 744- 1331(Registrant’s
telephone number, including area code)

N/A(Former
name or former address and former fiscal year, if changed since last report)

_________________

Indicate by check mark whether
the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during
the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject
to such filing requirements for the past 90 days.  Yes  þNo o

Indicate by check mark
whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File
required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the
preceding 12 months (or for such shorter period that the registrant was required to submit and post such
files).  Yes  þNo o

Indicate
by check mark whether the registrant is a large accelerated filer, an accelerated filer,
a non-accelerated filer, or a smaller reporting company.

|Large accelerated filer  o | Accelerated filer  o | Non-accelerated filer  o | Smaller reporting company  þ
|-------------------------- | -------------------- | ------------------------ | ----------------------------

Indicate by check mark
whether the registrant is a shell company (as defined in Rule 12b-2 of the Act).     Yes  o     No  þ



APPLICABLE
ONLY TO CORPORATE ISSUERS



Indicate
the number of shares outstanding of the issuer's common stock, as of the latest practical date:









There were 28,027,934 shares of
the Registrant’s common stock outstanding at October 29, 2012.



1





















Form 10-Q

For the Quarterly Period Ended September
30, 2012







TABLE OF CONTENTS





|                              |          |  |    |                                                                                                                          |  |  |    | 
|----------------------------- | -------- |  | -- | ------------------------------------------------------------------------------------------------------------------------ |  |  | -- | 
|                              |          |  |    | Page                                                                                                                    
|                              |          |  |    |                                                                                                                          |  |  |    | 
|PART I. FINANCIAL INFORMATION
|                              | Item 1.  |  |    | Consolidated Financial Statements                                                                                        |  |  |    | 
|                              |          |  |    | Consolidated Balance Sheets at September 30, 2012 (unaudited) and December 31, 2011(audited)                             |  |  | 4  | 
|                              |          |  |    | Consolidated Statements of Operations for the three months and nine months ended September 30, 2012 and 2011 (unaudited) |  |  | 5  | 
|                              |          |  |    | Consolidated Statements of Cash Flows for the nine months ended September 30, 2012 and 2011 (unaudited)                  |  |  | 6  | 
|                              |          |  |    | Notes to Consolidated Financial Statements                                                                               |  |  | 7  | 
|                              | Item 2.  |  |    | Management’s Discussion and Analysis of Financial Condition and Results of Operations                                    |  |  | 16 | 
|                              | Item 3.  |  |    | Quantitative and Qualitative Disclosure About Market Risk                                                                |  |  | 18 | 
|                              | Item 4.  |  |    | Controls and Procedures                                                                                                  |  |  | 18 | 
|                             
|PART II. OTHER INFORMATION   
|                              | Item 1.  |  |    | Legal Proceedings                                                                                                        |  |  | 19 | 
|                              | Item 1A. |  |    | Risk Factors                                                                                                             |  |  | 19 | 
|                              | Item 2.  |  |    | Unregistered Sales of Equity Securities and Use of Proceeds                                                              |  |  | 19 | 
|                              | Item 3.  |  |    | Defaults Upon Senior Securities                                                                                          |  |  | 19 | 
|                              | Item 4.  |  |    | Removed and Reserved                                                                                                     |  |  | 19 | 
|                              | Item 5.  |  |    | Other Information                                                                                                        |  |  | 19 | 
|                              | Item 6.  |  |    | Exhibits                                                                                                                 |  |  | 20 | 
|Signatures                    |          |  | 20 |                                                                                                                         
|Exhibit 31.1                 
|Exhibit 31.2                 
|Exhibit 32.1                 
|Exhibit 32.2                 





2







This
report contains trademarks and trade names that are the property of Arrayit Corporation and its subsidiaries, and of other companies,
as indicated.





FORWARD-LOOKING STATEMENTS



Portions
of this Form 10-Q, including disclosure under “Management’s Discussion and Analysis of Financial Position and Results
of Operations,” contain forward-looking statements within the meaning of Section 27A of the Securities Act of 1933, as amended
(the “Securities Act”), Section 21E of the Securities and Exchange Act of 1934, as amended (the “Exchange Act”),
and the Private Securities Litigation Reform Act of 1995, as amended. These forward-looking statements are subject to risks and
uncertainties and other factors that may cause our actual results, performance or achievements to be materially different from
the results, performance or achievements expressed or implied by the forward-looking statements. You should not unduly rely on
these statements. Forward-looking statements involve assumptions and describe our plans, strategies, and expectations. You can
generally identify a forward-looking statement by words such as may, will, should, expect, anticipate, estimate, believe, intend,
contemplate or project. Factors, risks, and uncertainties that could cause actual results to differ materially from those in the
forward-looking statements include, among others,



|· | our ability to raise capital,           
|- | ----------------------------------------
|· | our ability obtain and retain customers,



|· | our ability to provide our products and services at competitive rates,         
|- | -------------------------------------------------------------------------------
|· | our ability to execute our business strategy in a very competitive environment,



|· | our degree of financial leverage,                                          
|- | ---------------------------------------------------------------------------
|· | risks associated with our acquiring and integrating companies into our own,



|· | risks related to market acceptance and demand for our services,
|- | ---------------------------------------------------------------
|· | the impact of competitive services,                            



|· | other risks referenced from time to time in our SEC filings.
|- | ------------------------------------------------------------



With
respect to any forward-looking statement that includes a statement of its underlying assumptions or bases, we caution that, while
we believe such assumptions or bases to be reasonable and have formed them in good faith, assumed facts or bases almost always
vary from actual results, and the differences between assumed facts or bases and actual results can be material depending on the
circumstances. When, in any forward-looking statement, we or our management express an expectation or belief as to future results,
that expectation or belief is expressed in good faith and is believed to have a reasonable basis, but there can be no assurance
that the stated expectation or belief will result or be achieved or accomplished. All subsequent written and oral forward-looking
statements attributable to us, or anyone acting on our behalf, are expressly qualified in their entirety by the cautionary statements.
We do not undertake any obligations to publicly release any revisions to any forward-looking statements to reflect events or circumstances
after the date of this report or to reflect unanticipated events that may occur.





3









PART I – FINANCIAL INFORMATION

ITEM 1.

ARRAYIT CORPORATION

CONSOLIDATED BALANCE SHEETS

|                                                                                                                    |  |            |              |           
|------------------------------------------------------------------------------------------------------------------- |  | ---------- | ------------ | ----------
|                                                                                                                    |  |            |              |           
|                                                                                                                    |  | 09/30/2012 |              | 12/31/2011
|ASSETS                                                                                                              |  |            |              |           
|Current Assets:                                                                                                     |  |            |              |           
|Cash                                                                                                                |  | $          | 23,702       |           
|Accounts
    receivable                                                                                             |  |            | [1]198,582   |           
|Inventory                                                                                                           |  |            | 352,691      |           
|Prepaid
    expenses                                                                                                |  |            | 2,250        |           
|Total
    current assets {sum}                                                                                      |  |            | 577,225      |           
|                                                                                                                    |  |            |              |           
|Property
    and equipment, net                                                                                     |  |            | 6,492        |           
|Deposits                                                                                                            |  |            | 18,365       |           
|Total
    assets {sum}                                                                                              |  | $          | 602,082      |           
|                                                                                                                    |  |            |              |           
|Liabilities
    and Stockholders' Deficit                                                                           |  |            |              |           
|Current
    liabilities:                                                                                            |  |            |              |           
|Accounts
    payable and accrued liabilities                                                                        |  | $          | 6,905,678    |           
|Bank
    overdraft                                                                                                  |  |            | 199,718      |           
|Due
    to related parties                                                                                          |  |            | 586,783      |           
|Customer
    deposits                                                                                               |  |            | 4,895        |           
|Notes
    payables, current portion including related parties                                                       |  |            | 1,149,541    |           
|Total
    current liabilities {sum}                                                                                 |  |            | 8,846,615    |           
|Notes
    payable, long term                                                                                        |  |            | 0            |           
|Total
    liabilities {sum}                                                                                         |  |            | 8,846,615    |           
|                                                                                                                    |  |            |              |           
|Commitments
    and contingencies                                                                                   |  |            | 0            |           
|                                                                                                                    |  |            |              |           
|Stockholders'
    Deficit                                                                                           |  |            |              |           
|Preferred
    stock,  $0.001 par value; 20,000,000 shares authorized;                                               |  |            |              |           
|Preferred
    stock, Series A, 22,034 shares outstanding                                                            |  |            | 22           |           
|Preferred
    stock, Series C,$0.001 par value; 89,091 and 90,934 shares outstanding                                |  |            | 92           |           
|Common
    stock, $0.001 par value; 480,000,000 shares authorized, 27,803,584 and 26,978,501 issued and outstanding |  |            | 27,614       |           
|Additional
    paid-in capital                                                                                      |  |            | 16,581,416   |           
|Accumulated
    deficit                                                                                             |  |            | (25,437,081) |           
|Total
    Arrayit Corp’s Stockholders’ Equity (Deficit) {sum}                                                       |  |            | (8,827,937)  |           
|Total
Non-controlling interests                                                                                     |  |            | 583,404      |           
|Total
    stockholders' deficit  {sum}                                                                              |  |            | (8,244,533)  |           
|Total
liabilities and stockholders' deficit  {sum}                                                                  |  | $          | 602,082      |           
|[1] Accounts receivable, net of allowance for doubtful accounts of $133,000                                         |  |            |              |           
|[2] Accounts receivable, net of allowance for doubtful accounts of $133,000                                         |  |            |              |           

The
accompanying notes are an integral part of these consolidated financial statements



4









ARRAYIT CORPORATION

CONSOLIDATED STATEMENTS OF OPERATIONS

(Unaudited)







|                                                                |   |                                                                                                                                                                                                                                                               |  
|--------------------------------------------------------------- | - | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | -
|                                                                |   |                                                                                                                                                                                                                                                               |  
|                                                                |   | For
                                                                                                          the  Three Months
                                                                                                          Ended Sept 30, 2012 |  
|Statement of Operations                                         |   |                                                                                                                                                                                                                                                               |  
|Total
    Revenues                                              | $ | 547,233                                                                                                                                                                                                                                                       |  
|Cost of
    Sales                                               |   | 252,003                                                                                                                                                                                                                                                       |  
|Gross
    Margin {sum}                                          |   | 295,230                                                                                                                                                                                                                                                       |  
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Selling,
    General and Administrative                         |   | 297,745                                                                                                                                                                                                                                                       |  
|Research and
    Development                                    |   | 771                                                                                                                                                                                                                                                           |  
|Legal
    Expense                                               |   | 8,331                                                                                                                                                                                                                                                         |  
|Loss
    from operations {sum}                                  |   | (11,617                                                                                                                                                                                                                                                       | )
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Interest
    expense                                            |   | (27,859                                                                                                                                                                                                                                                       | )
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Net loss                                                        |   | (39,476                                                                                                                                                                                                                                                       | )
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Less:
    Net loss attributable to the non-controlling interest |   | (44,407                                                                                                                                                                                                                                                       | )
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Net
    Income (Loss) attributable to common stockholders {sum} |   | 4,931                                                                                                                                                                                                                                                         |  
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Profit
    (Loss) per share - basic                             | $ | (0.00                                                                                                                                                                                                                                                         | )
|                                                                |   |                                                                                                                                                                                                                                                               |  
|Basic
    weighted average number of common shares              |   | 27,803,584                                                                                                                                                                                                                                                    |  
|                                                                |   |                                                                                                                                                                                                                                                               |  

The
accompanying notes are an integral part of these consolidated financial statements





5









ARRAYIT CORPORATION

CONSOLIDATED STATEMENTS OF CASH FLOWS

(Unaudited)





|                                                      |  | For the Nine Months Ended September 30
|----------------------------------------------------- |  | --------------------------------------
|                                                      |  | 2012                                  
|Cash flows from operating activities:                 |  |                                       
|Net loss                                              |  | $                                     
|Adjustments to reconcile net loss                     |  |                                       
|to net cash provided by operating activities:         |  |                                       
|Depreciation                                          |  |                                       
|Amortization                                          |  |                                       
|Stock paid for services                               |  |                                       
|Increase in non-controlling interest                  |  |                                       
|Changes in operating assets and liabilities           |  |                                       
|Accounts receivable                                   |  |                                       
|Inventory                                             |  |                                       
|Prepaids                                              |  |                                       
|Deposits                                              |  |                                       
|Accounts payable and accrued liabilities              |  |                                       
|Bank overdraft                                        |  |                                       
|Due to related parties                                |  |                                       
|Accrued interest                                      |  |                                       
|Customer deposits                                     |  |                                       
|                                                      |  |                                       
|Net cash provided by operating activities             |  |                                       
|                                                      |  |                                       
|Cash flows from investing activities:                 |  |                                       
|Net cash provided by (used in) investing activities   |  |                                       
|Cash paid for purchase of fixed assets                |  |                                       
|                                                      |  |                                       
|Cash flows from financing activities:                 |  |                                       
|Proceeds from loans, net                              |  |                                       
|Repayment of notes payable                            |  |                                       
|Net cash used in financing activities                 |  |                                       
|                                                      |  |                                       
|Net increase (decrease) in cash                       |  |                                       
|                                                      |  |                                       
|Cash, beginning of period                             |  |                                       
|                                                      |  |                                       
|Cash, end of period                                   |  |                                       
|                                                      |  |                                       
|Supplemental cash flow information:                   |  |                                       
|                                                      |  |                                       
|Cash paid for interest                                |  |                                       
|                                                      |  |                                       
|Cash paid for income taxes                            |  |                                       
|                                                      |  |                                       
|Noncash Transaction:                                  |  |                                       
|                                                      |  |                                       
|Payment of bank note by related party in exchange for |  |                                       
|note payable with the company                         |  |                                       
|                                                      |  |                                       
|Conversion of accrued interest to notes payable       |  |                                       
|                                                      |  |                                       
|Conversion of preferred stock                         |  |                                       
|                                                      |  |                                       
|Shares issued for services                            |  |                                       



The accompanying notes are an integral
part of these consolidated financial statements

6







ARRAYIT CORPORATION

NOTES TO CONSOLIDATED UNAUDITED STATEMENTS

September 30, 2012



NOTE 1 – ORGANIZATION AND BUSINESS OPERATIONS



Arrayit
Corporation (the “Company” or “Arrayit”) is a Nevada “C” Corporation that entered into the
life sciences in 1996.  Arrayit is a leading edge developer, manufacturer and marketer of next-generation life science
tools and integrated systems for the large scale analysis of genetic variation, biological function and diagnostics. Using Arrayit’s
proprietary and patented technologies, the Company provides a comprehensive line of products and services that currently serve
the sequencing, genotyping, gene expression and protein analysis markets, and the Company expects to enter the market for manufacturing
molecular diagnostics.

Arrayit
has earned respect as a leader in the health care and life sciences industries with its proven expertise in three key areas: the
development and support of microarray tools and components, custom printing and analysis of microarrays for research, and the
identification and development of diagnostic microarrays and tools for early detection of treatable disease states. As a result,
Arrayit has provided tools and services to thousands of the leading genomic research centers, pharmaceutical companies, academic
institutions, clinical research organizations, government agencies and biotechnology companies worldwide.

Arrayit
has a December 31 year end.

Arrayit’s
principal office is in Sunnyvale, California. Arrayit presently has nine employees.



Interim financial statements



The
accompanying unaudited consolidated financial statements have been prepared in accordance with the instructions to Form 10-Q and
Article 10 of Regulation S-X, and, therefore, do not include all information and footnotes necessary for a complete presentation
of financial position, results of operations, cash flows, and stockholders’ equity in conformity with accounting principles
generally accepted in the United States of America. In the opinion of management, all adjustments considered necessary for a fair
presentation of the results of operations and financial position have been included and all such adjustments are of a normal recurring
nature.



These
consolidated financial statements should be read in conjunction with the audited consolidated financial statements and notes thereto
contained in Arrayit’s Annual Report filed with the SEC on Form 10-KA. The results of operations for interim periods are
not necessarily indicative of the results to be expected for the full year. Notes to the consolidated financial statements, which
would substantially duplicate the disclosure contained in the audited financial statements for fiscal year 2011 as reported in
Form 10-KA, have been omitted.



7









NOTE 2 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES AND
GOING CONCERN



Basis of Presentation



The following includes a description of subsidiaries and percentage
ownership at September 30, 2012:



|Subsidiary                         | Date
    of Incorporation | Business
    of Entity                                                                                             | Ownership                                                                                         
|---------------------------------- | ------------------------- | ------------------------------------------------------------------------------------------------------------------ | --------------------------------------------------------------------------------------------------
|TeleChem International, Inc.       | November 1, 1993          | Import, export and distribution of wholesale industrial chemicals                                                  | 100% owned by Arrayit Corporation                                                                 
|                                   |                           |                                                                                                                    |                                                                                                   
|Arrayit Diagnostics, Inc.          | June 2, 1009              | Markets a test for Ovarian Cancer incorporating the technology and equipment developed by Arrayit Corporation      | 61% owned by Arrayit Corporation                                                                  
|                                   |                           |                                                                                                                    |                                                                                                   
|Arrayit Scientific Solutions, Inc. | October 15, 2009          | Markets a test for Parkinson’s Disease incorporating the technology and equipment developed by Arrayit Corporation | 98% owned by Arrayit Corporation (2% owned by the President of Arrayit Scientific Solutions, Inc.)





On
December 12, 2011, Arrayit Corporation signed an Agreement and Plan of Distribution with its subsidiary, Arrayit Diagnostics,
Inc., whereby 19,350,000 shares of common stock of Arrayit Diagnostics (61% of the total outstanding) owned by Arrayit Corporation
will be distributed ratably to the shareholders of Arrayit Corporation on the record date which will occur upon approval by the
SEC of the Form S-1 registration statement to be submitted by Arrayit Diagnostics, Inc. Arrayit Diagnostics submitted the Form
S-1 registration statement to the SEC during the fourth quarter of 2012.



Summary of Significant Accounting Policies



Financial
Reporting:



The
Company prepares its financial statements in conformity with accounting principles generally accepted in the United States of
America. Revenues and expenses are reported on the accrual basis, which means that income is recognized as it is earned and expenses
are recognized as they are incurred. Inventories are stated at the lower of cost or market, cost determined on the basis of FIFO.
The Company recognizes revenue when persuasive evidence of an arrangement exists, delivery has occurred, the fee is fixed or determinable,
and collectability is reasonably assured.

Management
acknowledges that it is solely responsible for adopting sound accounting practices, establishing and maintaining a system
of internal accounting control and preventing and detecting fraud. The Company's system of internal accounting control is designed
to assure, among other items, that 1) recorded transactions are valid; 2) valid transactions are recorded; and 3) transactions
are recorded in the proper period in a timely manner to produce financial statements which present fairly the financial condition,
results of operations and cash flows of the Company for the respective periods being presented.

Non-Controlling
Interest:

Arrayit
Corporation is the controlling interest of an affiliated group, since it maintains investments in each of its operating entities.
Effective December 12, 2011, Arrayit Corporation, signed an Agreement and Plan of Distribution with its subsidiary, Arrayit Diagnostics,
Inc., whereby 19,350,000 shares of common stock of Arrayit Diagnostics (61% of the total outstanding) owned by Arrayit Corporation
will be distributed ratably to the shareholders of Arrayit Corporation on the record date which occur upon approval by the SEC
of the Form S-1 registration statement to be submitted by Arrayit Diagnostics, Inc. The shares of Arrayit Corporation entitled
to participate in the “spin-off” shares will include shares of Arrayit Corporation issuable on the record date upon
conversion of outstanding securities and exercise of outstanding warrants and options.

The
Company accounts for the non-controlling interest in two of its subsidiaries under ASC 810-10-45-16, Non-controlling Interest
in a Subsidiary. This standard defines a non-controlling interest, previously called a minority interest, as the portion of equity
in a subsidiary not attributable, directly or indirectly, to a parent. The standard requires, among other items, that a non-controlling
interest be included in the consolidated statement of financial position within equity separate from the parent's equity; consolidated
net income to be reported at amounts inclusive of both the parent's and non-controlling interest’s shares and, separately,
the amounts of consolidated net income attributable to the parent and non-controlling interest all on the consolidated statement
of operations; and if a subsidiary is deconsolidated, any retained non-controlling equity investment in the former subsidiary
be measured at fair value and a gain or loss be recognized in net income based on such fair value. Additionally, the standard
defines a non-controlling interest as a financial instrument issued by a subsidiary that is classified as equity in the subsidiary's
financial statements. A financial instrument issued by a subsidiary that is classified as a liability in the subsidiary's financial
statements based on the guidance in other standards is not a controlling interest because it is not an ownership interest.

Royalty
interests that entitle the holder to participate in future earnings and were not repayable are classified as non-controlling interests.



Recent
Accounting Pronouncements

ASU
2011-5, Statement of Comprehensive Income, was effective for the first quarter of 2012, but the guidance, which required companies
to present net income and comprehensive income in one continuous statement or two consecutive statements had no impact on the
Company’s financial statements.

The
Company has reviewed all recently issued, but not yet effective, accounting pronouncements and does not believe the future adoption
of any such pronouncements may be expected to cause a material impact on its financial condition or the results of its operations.

Loss per Common and Common Equivalent Share

The
computation of basic loss per common share is computed using the weighted average number of common shares outstanding during the
year. The computation of diluted earnings per common share is based on the weighted average number of shares outstanding during
the year plus common stock equivalents which would arise from their exercise using the treasury stock method and the average market
price per share during the year.  The Company determined that the effect of common stock equivalents (Stock Options, Stock
Warrants and convertible Series “C” Preferred Shares) outstanding at September 30, 2012 and at December 31, 2011 were
anti dilutive.



8







NOTE 3 – GOING CONCERN



The
accompanying consolidated financial statements of the Company were prepared on a going concern basis, which contemplates the realization
of assets and the satisfaction of liabilities in the normal course of business. The Company has incurred significant net losses
and negative cash from operations. At September 30, 2012, Arrayit had a working capital deficit of $8,269,390 an accumulated deficit
of $25,437,081, and recurring net losses.  Management believes that current available resources will not be sufficient
to fund the Company’s planned expenditures over the next 12 months. The Company’s ability to continue to meet its
obligations and to achieve its business objectives is dependent upon, among other things, raising additional capital or generating
sufficient revenue in excess of costs. At such time as the Company requires additional funding, the Company will seek to raise
such additional funding from various possible sources, including its parent company, the public equity market, private financings,
sales of assets, collaborative arrangements and debt. If the Company raises additional capital through the issuance of equity
securities or securities convertible into equity, stockholders will experience dilution, and such securities may have rights,
preferences or privileges senior to those of the holders of common stock or convertible senior notes. If the Company raises additional
funds by issuing debt, the Company may be subject to limitations on its operations, through debt covenants or other restrictions.
If the Company obtains additional funds through arrangements with collaborators or strategic partners, the Company may be required
to relinquish its rights to certain technologies or products that it might otherwise seek to retain. There can be no assurance
that the Company will be able to raise additional funds, or raise them on acceptable terms. If the Company is unable to obtain
financing on acceptable terms, it may be unable to execute its business plan, the Company could be required to delay or reduce
the scope of its operations, and the Company may not be able to pay off its obligations, if and when they come due.



These
factors create substantial doubt about Arrayit’s ability to continue as a going concern. These consolidated financial statements
do not include any adjustments relating to the recoverability or classification of recorded assets and liabilities or other adjustments
that may be necessary should the Company not be able to continue as a going concern.



The
ability of Arrayit to continue as a going concern is dependent on Arrayit generating cash from the sale of its common stock or
obtaining debt financing and attaining future profitable operations. Management's plans include selling its equity securities
and obtaining debt financing to fund its capital requirement and ongoing operations; however, there can be no assurance Arrayit
will be successful in these efforts.



9







NOTE 4 – ACCOUNTS RECEIVABLE



Accounts
receivable are shown net of an Allowance for Doubtful Accounts. As more fully explained in Note 5 below, accounts receivable has
been reduced by Accounts Receivable loans sold with recourse.



|                                                          | September  30, 2012 | December  31, 2011
|--------------------------------------------------------- | ------------------- | ------------------
|Gross accounts receivable                                 | $                   | 525,558           
|Less:                                                     |                     |                   
|Allowance for doubtful  accounts                          |                     | (133,000          
|Loan value of receivables sold with recourse (see note 5) |                     | (193,976          
|Total                                                     | $                   | 198,582           





NOTE 5 – ACCOUNTS RECEIVABLE SOLD WITH RECOURSE



Pursuant
to an agreement dated July 5, 2007, the Company has sold some of its Accounts Receivable to a financial institution with full
recourse. The financial institution retains a 15% portion of the proceeds from the receivable sales as reserves, which are released
to the Company as the Receivables are collected. The maximum commitment under this facility is $450,000, and is limited to receivables
that are less than 31 days outstanding. The facility bears interest at 16% at September 30, 2012, and is secured by an unconditional
guarantee of the Company and a first charge against the Accounts Receivable. At September 30, 2012, the balance outstanding under
the recourse contracts was $193,976 net of a hold back reserve of $43,573 (December 31, 2011, $242,550
net of a hold back reserve of $59,405). Because of the Company’s credit policies, repossession losses and refunds
in the event of default have not been significant and losses under the present recourse obligations are not expected to be significant,
it is at least reasonably possible that the Company’s estimate will change within the near term.



NOTE 6 – FIXED ASSETS



Property and equipment consisted of the following:



|                         |  | September 30, 2012 | December  31, 2011
|------------------------ |  | ------------------ | ------------------
|Fixed Assets – Cost      |  | $                  | 350,429           
|Less:                    |  |                    |                   
|Accumulated Depreciation |  |                    | (343,937          
|Total                    |  | $                  | 6,492             



Depreciation expense totalled $9,818 and $7,425, respectively, for
the three months ended September 30, 2012 and 2011.





10









NOTE 7 – ACCOUNTS PAYABLE AND ACCRUED LIABILITIES



Accounts payable and accrued liabilities, consisted of the following:



|                           |  | September, 2012 | December 31, 2011
|-------------------------- |  | --------------- | -----------------
|ACCOUNTS PAYABLE           |  |                 |                  
|Trade Vendors              |  | $               | 1,518,598        
|Professional Advisors      |  |                 | 3,021,936        
|Total Accounts Payable     |  |                 | 4,540,534        
|                           |  |                 |                  
|ACCRUED LIABILITIES        |  |                 |                  
|Accrued salaries and wages |  |                 | 1,863,612        
|Judgment Interest          |  |                 | 415,787          
|Other                      |  |                 | 85,745           
|Total Accrued Liabilities  |  |                 | 2,365,144        
|TOTAL                      |  | $               | 6,905,678        
|                           |  |                 |                  





11









NOTE 8 – DEBT



|                                                                                                                                                                                                                                                                                                                                                                                                                             | September 30,
    2012 |           | December  31, 2011
|---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ---------------------- | --------- | ------------------
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|NOTES PAYABLE - ARRAYIT DIAGNOSTICS, INC.                                                                                                                                                                                                                                                                                                                                                                                    |                        |           |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Note payable to WEM Equity Capital, with interest at 10%, due January 22, 2011 and now past due, secured by 1,000,000 shares of the Company's common stock. The terms also called for Arrayit Corporation to issue 300,000 warrants for shares of common stock at $0.22 per share, expires February 15, 2013.                                                                                                                | $                      | 78,556    |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Note payable Juggernaut Financial Group, LLC, interest at 10%, due August 10, 2010 and is now past due, secured by 200,000 shares of the Company's common stock, pledged by Company shareholders                                                                                                                                                                                                                             |                        | 63,487    |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Note payable to Chief Executive Officer of the Company, interest of 10%, due on demand                                                                                                                                                                                                                                                                                                                                       |                        | 85,000    |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             | $                      | 227,043   |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|NOTES PAYABLE - ARRAYIT CORP.                                                                                                                                                                                                                                                                                                                                                                                                |                        |           |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Notes payable, interest at 10%, which was due August 10, 2010 and is now past due, secured by 1,000,000 shares out of the Company's common stock, pledged to the private lender without compensation by the Company's Chairman.  The terms also called for the lender to withhold proceeds of $20,000 as a debt origination fee and the issuance of 200,000 warrants issuable for shares of common stock at $1.00 per share. |                        | 268,750   |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Notes payable, interest at 8%, unsecured due on demand from Arrayit creditors                                                                                                                                                                                                                                                                                                                                                |                        | 34,166    |                   
|Notes payable, interest at rates varying from 8% to 10%, unsecured due on demand from the former TeleChem shareholders and their families.                                                                                                                                                                                                                                                                                   |                        | 619,582   |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        | 922,498   |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Notes payable including related parties                                                                                                                                                                                                                                                                                                                                                                                      | $                      | 1,149,541 |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Short Term Debt                                                                                                                                                                                                                                                                                                                                                                                                              | $                      | 1,149,541 |                   
|Long Term Debt                                                                                                                                                                                                                                                                                                                                                                                                               |                        | 0         |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                             |                        |           |                   
|Notes payable including related parties                                                                                                                                                                                                                                                                                                                                                                                      | $                      | 1,149,541 |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                            







12

NOTE 9 – WARRANTS AND OPTIONS



|                                                                                          
|------------------------------------------------------------------------------------------
|The following table
    summarizes options and warrants outstanding at September 30, 2012:
|                                                                                          
|Outstanding
    at December 31, 2011                                                      
|Granted                                                                                   
|Cancelled/forfeited                                                                       
|Expired                                                                                   
|Exercised                                                                                 
|Outstanding
    at September 30, 2012                                                     





3







NOTE 10 – ROYALTY OBLIGATIONS



|(a) |  | Wayne State University – ARRAYIT DIAGNOSTICS, INC.
|--- |  | --------------------------------------------------



Under
terms of a biomarker license agreement between Wayne State University and Arrayit Diagnostics, Inc (ADI), effective December 7,
2009 ADI is obligated to pay the University royalties of 5% of net sales. In addition the license agreement provides for lump
sum payments to be made as milestone events are achieved.



There
were no revenues generated during the fiscal period ended September 30, 2012, and hence no obligation to pay any amounts to Wayne
State University.





|(b) |  | The Parkinson’s Institute – ARRAYIT SCIENTIFIC SOLUTIONS, INC.
|--- |  | --------------------------------------------------------------



Pursuant
to an agreement dated February 9, 2009 between the Company, and The Parkinson's Institute, a California Corporation, Arrayit Scientific
Solutions, Inc. is obligated to make payments, of 5% of gross earnings generated from Research derived from the biological specimens
from Parkinson's disease patients and control patients provided by the Parkinson's Institute.



There
were no revenues generated during the fiscal periods ended September 30, 2012 and hence no obligation to pay any amounts to the
Parkinson’s Institute.



NOTE 11 – STOCK-BASED COMPENSATION

The
Company adopted ASC 718 and ASC 505, "Share-Based Payment", to account for its stock options and similar equity instruments
issued. Accordingly, compensation costs attributable to stock options or similar equity instruments granted are measured at the
fair value at the grant date, and expensed over the expected vesting period. ASC 718 and ASC 505 requires excess tax benefits
be reported as a financing cash inflow rather than as a reduction of taxes paid.



Operations
for the periods ended September 30, 2012 and December 31, 2011 include $0 and $149,200 of stock-based compensation, arising from
the granting of 0 and 656,000 unregistered common shares, respectively. Restricted shares were issued in exchange for services
related to website consulting and investor relations. The Company relied upon the exemption under Section 4(2) of the Securities
Act.





14







NOTE 12 – CONVERTIBLE PREFERRED STOCK

Convertible Preferred Stock



The
Series A Preferred Stock has no stated dividend rate and has a liquidation preference of $.001 per share. The Series A Preferred
Stock also has voting rights that entitle the preferred shareholders to vote with the common shareholders as if the preferred
stock had converted to common. Both the conversion ratio of the preferred into common and the number of shares outstanding is
subject to revision upon reverse stock dividends or splits that reduce the total shares outstanding.



The
Series C Preferred Stock has no stated dividend rate. The Series C Preferred Stock also has voting rights that entitle the preferred
shareholders to vote with the common shareholders as if the preferred stock had converted to common. The conversion ratio of the
preferred into common is not subject to revision upon reverse stock dividends or splits that reduce the total shares outstanding.
The 103,143 Series C Preferred Stock was issued on February 21, 2008. These Series C Preferred shares are convertible into 36,100,000
common shares at the rate of 350:1. On August 15, 2008 the articles of designation for the Series C Preferred Stock were amended
to limit the conversion to common shares to 10% of the holders’ original holdings in any quarter. During the three months
ended September 30, 2012, zero Series C Preferred Stock shares were converted into shares of common stock.







|NOTE 13- STOCKHOLDERS' EQUITY                                                                               |  |                                                             |                    |                           |                     |   |        |             
|----------------------------------------------------------------------------------------------------------- |  | ----------------------------------------------------------- | ------------------ | ------------------------- | ------------------- | - | ------ | ------------
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|The following table summarizes changes in stockholders' equity during the quarter ended September 30, 2012: |  |                                                             |                    |                          
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|                                                                                                            |  | TOTAL ARRAYIT CORPORATION STOCKHOLDERS' EQUITY (DEFICIENCY) |                    | NON-CONTROLLING INTERESTS
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|                                                                                                            |  |                                                             | Preferred Series A |                           | Preferred Serious C |   |        | Common Stock
|Description                                                                                                 |  |                                                             | Number             |                           |                     |   | Dollar |             
|Balance, December 31, 2011                                                                                  |  |                                                             | 22,034             |                           |                     | $ | 22     |             
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|Convert Preferred C to Common                                                                               |  |                                                             |                    |                           |                     |   |        |             
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|Issuance of shares for services                                                                             |  |                                                             |                    |                           |                     |   |        |             
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|Increase in non-controlling interest                                                                        |  |                                                             |                    |                           |                     |   |        |             
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             
|Net Loss for the six months ended                                                                           |  |                                                             |                    |                           |                     |   |        |             
|September 30, 2012                                                                                          |  |                                                             |                    |                           |                     |   |        |             
|Balance, September 30, 2012                                                                                 |  |                                                             | 22,034             |                           |                     | $ | 22     |             
|                                                                                                            |  |                                                             |                    |                           |                     |   |        |             





15











NOTE 14 – INCOME TAXES



At September 30, 2012 and December 31, 2011,
the Company had net operating loss (NOL) carry-forwards available to offset future taxable income of approximately $25 million.
The utilization of the NOL carry-forwards is dependent upon the tax laws in effect at the time the NOL carry-forwards can be utilized.
It is likely that utilization of the NOL carry-forwards are limited based on changes in control. A valuation allowance of approximately
$10 million has been recorded against the deferred tax asset for as of September 30, 2012 and December 31, 2011 due to the uncertainty
surrounding its realization caused by the Company’s recurring losses. There was no change in the valuation allowance during
the quarter ended September 30, 2012. The NOL carry-forwards will fully expire in 2031.



NOTE 15 - COMMITMENTS AND CONTINGENCIES





Long Term Lease Commitments



The
Company leases its office facility in Sunnyvale, California under operating leases that expire November 30, 2012. Future minimum
lease payments as of September 30, 2012 are as follows:



YEAR
ENDING



2012
$30,967



Rent
expense was $147,927 and $134,880 for the nine months ended September 30, 2012
and 2011, respectively.



ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS AND RESULTS
OF OPERATIONS



For
a description of our significant accounting policies and an understanding of the significant factors that influenced our performance
during the nine months ended September 30, 2012, this “Management’s Discussion and Analysis” should be read
in conjunction with the Consolidated Unaudited Financial Statements, including the related notes, appearing in Item 1 of this
Quarterly Report, as well as the Company’s Annual Report on Form 10-KA for the year ended December 31, 2011. The preparation
of this Quarterly Report on Form 10-Q requires us to make estimates and assumptions that affect the reported amount of assets
and liabilities, disclosure of contingent assets and liabilities at the date of our financial statements, and the reported amounts
of revenue and expenses during the reporting period. There can be no assurance that actual results reported in the future will
not differ from those estimates or that revisions of these estimates may not become necessary in the future.

Forward-Looking
Statements



This
Quarterly Report on Form 10-Q, includes statements that constitute “forward-looking statements.”  These
forward-looking statements are often characterized by the terms "may," "believes," "projects," "expects,"
or "anticipates," and do not reflect historical facts. Specific forward-looking statements contained in this portion
of the Annual Report include, but are not limited to the Company's (i) expectation that certain of its liabilities listed on the
balance sheet under the headings "Accounts Payable," "Accrued Liabilities" and "Note Payable" will
be retired by issuing stock versus cash during the next 24 months; (ii) expectation that it will continue to devote capital resources
to fund continued development of the Arrayit technology; (iii) anticipation that it will incur significant capital expenditures
to further its deployment of the Arrayit offerings; and (iv) anticipation of a significant increase in operational and SG&A
costs as it accelerates the development and marketing of the Arrayit operations.

Forward-looking
statements involve risks, uncertainties and other factors, which may cause our actual results, performance or achievements to
be materially different from those expressed or implied by such forward-looking statements. Factors and risks that could affect
our results and achievements and cause them to materially differ from those contained in the forward-looking statements include
those to be identified in our Annual Report on Form 10-KA for the year ended December 31, 2011 in the section titled “Risk
Factors,” as well as other factors that we are currently unable to identify or quantify, but may exist in the future.

In
addition, the foregoing factors may generally affect our business, results of operations and financial position.  Forward-looking
statements speak only as of the date the statement was made.  We do not undertake and specifically decline any obligation
to update any forward-looking statements.



16









Results
of Operations



Comparison
of Operating Results –Three and Nine Months Ended September 30, 2012 and 2011

Gross
revenues for the three months ended September 30, 2012 and 2011 were $547,233 and $780,445, respectively, representing an 30%
decrease in gross revenues for the period. Gross revenues for the nine months ended September 30, 2012 and 2011 were $1,850,935
and $2,561,837, respectively, representing a 28% decrease in gross revenues for the period. The Company has an increasing backlog
of orders to fulfill, and attributes the decrease in gross revenues to a shortage of working capital to fulfill orders more timely.
The backlog of orders for the period ending September 30, 2012 is approximately $355,250 and the backlog of orders was approximately
$150,000 for the period ending September 30, 2011.

The
cost of sales for the three months ended September 30, 2012 and 2011 were $252,003 and $451,065, respectively resulting in gross
profit for the period of $295,230 and $329,380, respectively. The cost of sales for the nine months ended September 30, 2012 and
2011 amounted to $966,185 and $1,523,008, respectively, resulting in gross profit for the nine months ended September 30, 2012
and 2011 of $884,750 and $1,038,829, respectively. The Company’s cost of sales is dependent upon product mix. During the
third quarter of 2012, the gross margin was 58% versus 41% for the third quarter of 2011. The Company sold more microarray manufacturing
services in the third quarter of 2012, which has a higher gross margin percentage than the instruments and consumables that were
sold in the quarter ended September 30, 2011.

Selling,
general and administrative expenses for the three months ended September 30, 2012 and 2011 were $297,745 and $359,764, respectively.
The decrease of $62,019 is attributable to the cost of issuing stock during the three months ended September 30, 2011, and no
shares were issued during the three months ended September 30, 2012.

Net
loss from operations was $39,476 for the three months ended September 30, 2012, compared with a net loss from operations of $98,019
for the three months ended September 30, 2011. Net loss from operations for the nine months ended September 30, 2012 was $1,353,171,
compared with a net loss from operations of $260,836 for the nine months ended September 30, 2011.

Legal
expenses of $8,331 and $51,917 for the three months and nine months ended September 30, 2012 were attributable to the cost of
preparing the Form S-1 for Arrayit Diagnostics and maintenance fees on the patents of TeleChem International, Inc. and Arrayit
Corporation. Legal expenses of $23,621 and $74,542 for the three months and nine months ended September 30, 2011 were related
to settling the lawsuit between Pediatrix and Arrayit’s wholly owned subsidiary, TeleChem International, Inc.

Interest
expense was $27,859 and $122,358 for the three months and nine months ended September 30, 2012, compared to $40,587 and $141,049
for the three months and nine months ended September 30, 2011. The interest costs for 2012 and 2011 include the amortized cost
of debt arrangement fees and warrants issued in connection with financing. The decrease in interest costs was the result of negotiating
lower interest rates on past due balances with creditors.



Net
loss attributable to the non-controlling interest in our Arrayit Diagnostics, Inc. subsidiary amounted to $44,407 and $10,124
for the three months ended September 30, 2012 and 2011, respectively, and $460,813 and $37,880 for the nine months ended September
30, 2012 and 2011, respectively.



Liquidity
and Capital Resources

Cash
flows provided by operations were $88,922 for the nine months ended September 30, 2012, and cash flows provided by operations
were $134,163 for the nine months ended September 30, 2011. As of September 30, 2012, we had had a working capital deficiency
of $8,269,390 and an accumulated deficit of $25,437,081. The working capital deficiency, in addition to amounts payable in the
normal course of business, is primarily attributable to accrued legal expenses, deferred compensation, and judgement interest.

We
currently have no commitments, understandings or arrangements for any additional working capital. If we are unable to secure additional
financing to cover our operating losses until breakeven operations can be achieved we may not be able to continue as a going concern.
We are not aware of any trends, events or uncertainties that have a material impact upon our short-term or long-term liquidity.



We
estimate that we may require approximately $1,200,000 over the next twelve (12) months to meet our expenses and to continue to
perfect our proprietary microarray technology.  We may require additional funds over the next eighteen (18) months to
assist in realizing our business objectives.  The amount and timing of additional funds required will be dependent on
a variety of factors and cannot be determined at this time.  The Company has been successful in paying its operating
costs and funding its development from operations supplemented by short term borrowings from officers and third parties.   We
cannot be certain that we will be able to raise any additional capital to fund our ongoing operations.



Even
if we cannot raise additional capital, we believe that we will be able to continue operations for the next 12 months, based on
the funding currently provided and revenues that we anticipate generating in the near future.   Our investors should
assume that any additional funding may cause substantial dilution to current stockholders. In addition, we may not be able to
raise additional funds on favorable terms, if at all.



Source
of Liquidity



During
the nine months ended September 30, 2012, the Company relied upon short term loans and extended terms from its creditors to finance
its loss from operations.



Off-Balance
Sheet Arrangements

We
currently have no off-balance sheet arrangements.







17





Forward-Looking Statements



This
document contains forward-looking statements that involve risks and uncertainties. We use words such as anticipate, believe, plan,
expect, future, intend and similar expressions to identify such forward-looking statements. You should not place too much reliance
on these forward-looking statements.



ITEM
3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK



Not
required for smaller reporting companies.



ITEM
4. CONTROLS AND PROCEDURES



|(a) |  | Evaluation of disclosure controls and procedures
|--- |  | ------------------------------------------------

Disclosure
controls and procedures are designed with an objective of ensuring that information required to be disclosed in our periodic reports
filed with the Securities and Exchange Commission, such as this Quarterly Report on Form 10-Q, is recorded, processed, summarized
and reported within the time periods specified by the Securities and Exchange Commission. Disclosure controls also are designed
with an objective of ensuring that such information is accumulated and communicated to our management, including our chief executive
officer and chief financial officer, in order to allow timely consideration regarding required disclosures.

The
evaluation of our disclosure controls by our chief executive officer, who is also our acting chief financial officer, included
a review of the controls’ objectives and design, the operation of the controls, and the effect of the controls on the information
presented in this Quarterly Report. Our management, including our chief executive officer, does not expect that disclosure controls
can or will prevent or detect all errors and all fraud, if any. A control system, no matter how well designed and operated, can
provide only reasonable, not absolute, assurance that the objectives of the control system are met. Also, projections of any evaluation
of the disclosure controls and procedures to future periods are subject to the risk that the disclosure controls and procedures
may become inadequate because of changes in conditions, or that the degree of compliance with the policies or procedures may deteriorate.

Based
on this review and evaluation as of the end of the period covered by this Form 10-Q, and subject to the inherent limitations all
as described above, our chief executive officer, who is also our acting chief financial officer, has concluded that our disclosure
controls and procedures (as defined in Rules 13a-15(e) and 15d-15(e) under the Securities Exchange Act of 1934) contain material
weaknesses and are not effective

A
material weakness is a significant deficiency, or a combination of significant deficiencies, that results in more than a remote
likelihood that a material misstatement of the annual or interim financial statements will not be prevented or detected.

The
material weaknesses we have identified are the direct result of a lack of adequate staffing in our accounting department. Currently,
our chief executive officer and a controller have sole responsibility for receipts and disbursements. We do not employ any other
parties to prepare the periodic financial statements and public filings. Reliance on these limited resources impairs our ability
to provide for a proper segregation of duties and the ability to ensure consistently complete and accurate financial reporting,
as well as disclosure controls and procedures. As we grow, and as resources permit, we project that we will hire such additional
competent financial personnel to assist in the segregation of duties with respect to financial reporting, and Sarbanes-Oxley Section
404 compliance.



|(b) |  | Changes in internal control over financial reporting
|--- |  | ----------------------------------------------------



There
were no changes in our internal control over financial reporting that occurred during the quarter.

18







PART II – OTHER INFORMATION



ITEM 1. LEGAL PROCEEDINGS



On
October 11, 2012, Baker Hughes, Inc. filed a Notice of Motion and Motion for Appointment of Intellectual Property Receiver against
the Company’s subsidiary, TeleChem International, Inc., seeking to compel assignment of intellectual property in partial
satisfaction of a judgment. The Company’s counsel will defend this action at the Santa Clara County Municipal Court on November
29, 2012.



There
are no other legal proceedings, although we may, from time to time, be party to certain legal proceedings and other various claims
and lawsuits in the normal course of our business, which, in the opinion of management, are not material to our business or financial
condition.



ITEM
1A – RISKS FACTORS



Not
required for smaller reporting companies.



ITEM
2 – UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS

NONE

ITEM
3 – DEFAULTS UPON SENIOR SECURITIES

NONE

ITEM
4 – REMOVED AND RESERVED

NONE

ITEM
5 – OTHER INFORMATION

NONE



19







ITEM 6 – EXHIBITS





|Exhibit No. | Description                                                                                                                                                                                        
|----------- | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|31.1        | Certification of Chief Executive Officer and Principal Accounting Officer pursuant to Section 302 of the Sarbanes - Oxley Act of 2002. (Filed herewith)                                            
|32.1        | Certification of Chief Executive Officer and Principal Accounting Officer pursuant to 18 U.S.C. Section 1350 as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. (Filed herewith)







SIGNATURES





In accordance with Section 13 or 15(d) of the Exchange Act, the
registrant caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.



|                         | Arrayit Corporation   
|------------------------ | ----------------------
|                         |                       
|Dated: November 20, 2012 | By: /s/ RENE A. SCHENA
|                         | Rene A. Schena        
|                         | Chairman and Director 





20