# Patent

## Title
Recognition molecules for the treatment and detection of tumors

## Abstract

The invention relates to recognition molecules directed towards tumors, and it also relates to pharmaceutical compositions comprising said recognition molecules, methods for the production of said recognition molecules, and to the use of said recognition molecules in the diagnosis and therapy of tumor diseases.

## Background
CROSS REFERENCE TO RELATED APPLICATIONS
This application is a continuation of U.S. patent application Ser. No. 10/540,479 filed May 10, 2006, now issued on Jul. 15, 2014 as U.S. Pat. No. 8,779,102, which is a U.S. national stage application filed under 35 U.S.C. §371 of International Patent Application PCT/DE2004/000132 accorded an international filing date of Jan. 23, 2004, which claims the benefit of German (DE) Application No. 10303664.4 filed Jan. 23, 2003.


STATEMENT REGARDING SEQUENCE LISTING
The Sequence Listing associated with this application is provided in text format in lieu of a paper copy, and is hereby incorporated by reference into the specification. The name of the text file containing the Sequence Listing is 400086_403C1_SEQUENCE_LISTING.txt. The text file is 96.5 KB, was created on Jun. 22, 2014, and is being submitted electronically via EFS-Web.
TECHNICAL FIELD
The invention relates to recognition molecules directed towards tumors, and it also relates to pharmaceutical compositions comprising said recognition molecules, methods for the production of said recognition molecules, and to the use of said recognition molecules in the diagnosis and therapy of tumor diseases.
DETAILED DESCRIPTION
Tumor diseases belong to the most frequent diseases of organisms, especially of mammals such as humans. In particular, successful treatment of a tumor disease depends on the stage of tumor development where therapy is begun. It is advantageous when therapy can be begun at a point in time where the tumor has minimum expansion and diffusion within the body, with expansion being understood to be the individual size of a tumor tissue, and diffusion being understood to be possible metastasization or infiltration into surrounding organs. An organism suffering from a tumor disease secretes particular, quite complex substances or fairly simple molecules which can be utilized in the diagnosis of tumors at an early stage of the disease, i.e., of tumors fairly small in size. The best-known amongst these structures are tumor markers. In general, tumor markers are chemical substances being more or less specific for a particular type of tumor or showing increased presence in association with a tumor. For example, tumor markers can be cellular in nature, such as oncogenes, certain hormone receptors or membrane antigens such as CA 2, CA 3, CA 19-19 and others. However, tumor markers can also be humoral markers being either produced by a tumor or induced by a tumor. More specifically, the group of tumor-produced tumor markers includes tumor-associated antigens, hormones, enzymes and other compounds. For example, tumor-induced humoral tumor markers are enzymes such as alkaline phosphatase or e.g. the acute phase protein (e.g. ferritin). In the prior art, tumor markers are preferably detected using immunologic methods, which is why the synonym “tumor antigen” is frequently used to denote tumor markers. Well-known tumor antigens are oncofetal antigens, blood type-associated antigens, organ-specific antigens and other antigens, such as CA 15-3, for example.
Cancer diagnostics using tumor markers involves several disadvantages. Thus, certain tumor markers may also be present in non-cancerogenic diseases, so that the recognition molecules employed indicate a positive reaction. Furthermore, non-interaction of recognition molecules does not indicate the absence of a tumor disease. Another drawback is that well-known recognition molecules are normally nonspecific. That is, positive detection rarely indicates a specific type of tumor disease. In addition, another and crucial drawback of well-known recognition molecules is their limited usability in monitoring the development of tumors, e.g. subsequent to surgery. As a rule, the use of well-known tumor markers therefore is not possible in early recognition or in aftercare, especially in prophylaxis.
In addition to the above general disadvantages, there are some specific drawbacks in recognition molecules directed towards tumor antigens differing only in their glycosylation from a corresponding antigen in normal tissue. The antibodies are required to be glycosylation-dependent and must reflect the change in the state of glycosylation of the antigen in a tumor. Thus, for example, the glycosylation of MUC1 on breast tumor cells is changed. There is massive reduction in the chain length of O-glycans and a reduction of sialic acid O-acetylation.
Another disadvantage of well-known recognition molecules towards tumor markers is that they do not make the tumor recognizable until it has already reached a critical size. That is to say, early stages of tumor growth cannot be determined with well-known recognition molecules directed towards tumor markers.
The polymorphic epithelial mucin MUC1, in the form of the overall molecule, is a well-established tumor marker. As a result of the complexity of the molecule, which is very large, highly glycosylated, essentially consists of a large number of polymorphic tandem repeats of 20 amino acid residues in the extracellular state, and has heterogeneous glycosylation with respect to the tandem repeats, MUC1 has a variety of epitopes. One existing disadvantage is the fact that it is not known which epitope on MUC1 has optimum suitability as a target structure for tumor therapy and diagnosis. Another drawback is that conventional MUC1-specific antibodies (providing relatively good recognition of MUC1 on particular tumors) also give high levels of recognition of such MUC1 released into the serum by tumor cells (shedding). Obviously, such high levels of binding of MUC1 present in the serum in tumor patients is disadvantageous in the therapy of tumor diseases using such MUC1 specific antibodies. Another drawback is that most of the MUC1-specific antibodies exhibit binding to several normal tissues as well.
The object of the invention is therefore to provide recognition molecules which, on the one hand, allow easy, reliable and efficient detection of tumors and, in addition, can be used in the prophylaxis, therapy and/or aftercare of tumors and give no or only low levels of binding to MUC1 released into the serum and no or low levels of binding to normal tissue.
The invention solves the above technical problem by providing recognition molecules comprising an amino acid sequence which contains the amino acid sequence SEQ ID No. 1 or 2 and the amino acid sequence SEQ ID No. 3 or 4 and the amino acid sequence SEQ ID No. 5 or 6, said recognition molecules specifically binding the glycosylated MUC1 tumor epitope.
Mutatis mutandis, the definitions of terms given below also apply to statements given above, those given here and hereinafter.
According to the invention, the term recognition molecule is understood to concern a molecule which, especially under stringent conditions, specifically binds the glycosylated MUC1 tumor epitope. For example, stringent conditions are high salt concentrations and excessive washing using mild detergents such as NP-40 or Tween.
According to the invention, “glycosylated MUC1 tumor epitope” is understood to be an epitope which comprises at least one PDTRP sequence of the MUC1 tandem repeat and is glycosylated with GalNAc or Gal-GalNAc on the PDTRP threonine.
According to the invention, specific binding of the glycosylated MUC1 tumor epitope is understood to be binding of the recognition molecules of the invention, comprising a combination of the following binding properties:
a) Binding in test methods as described in Example 5 to the glycosylated PDTRP region within a MUC1 tandem repeat sequence which consists of 1 to 1.5 tandem repeats (molecule comprised of 30 amino acids, see Example 5) and is glycosylated with GalNAcalphal-O-Thr (referred to as GalNAc hereinbelow) or Galbetal-3GalNAcalfal-O-Thr (referred to as Gal-GalNAc hereinbelow) on the threonine, the binding strength being increased many times over compared to the non-glycosylated peptide of same length and peptide sequence. As defined herein, “increased many times over” means that the binding ratio of the PDTRP-glycosylated MUC1 glycopeptide to nonglycosylated peptide reaches a factor of >4.5 in a test as described in Example 5.1 (using the MUC1 peptide or glycopeptide described therein, having a length of 30 amino acids which corresponds to 1.5 tandem repeats).
b) Binding in test methods as described in Example 5.2 to multiple non-glycosylated MUC1 tandem repeats consisting of at least 3 tandem repeats, preferably 5 tandem repeats.
c) Statistically significantly reduced binding to tumor cell-released MUC1 present in the serum of colon carcinoma patients compared to antibodies of the CA15-3 test (Example 11) and of HMFG-1 (likewise cf. Example 11). The test method used to this end is illustrated in more detail in Example 11.
d) As described in Example 6, the interaction between antigen and recognition molecule is either increased or not influenced by neuraminidase treatment.
e) There is no or barely detectable binding to colon normal tissue and specific strong binding to colon tumor tissue (see Example 6).
Owing to the amino acid sequences being included according to the invention, specified above and hereinbelow, the recognition molecules of the invention have a structure which causes specific interaction of the recognition molecules with MUC1 in the form of specific binding of the glycosylated MUC1 tumor epitope with binding properties as described.
In a preferred embodiment of the invention the recognition molecule comprises an amino acid sequence which contains the amino acid sequence SEQ ID NO. 1, the amino acid sequence SEQ ID NO. 3 and the amino acid sequence SEQ ID NO. 5, said recognition molecule specifically binding the glycosylated MUC1 tumor epitope.
In another preferred embodiment of the invention the recognition molecule comprises an amino acid sequence which contains the amino acid sequence SEQ ID NO. 2, the amino acid sequence SEQ ID NO. 4 and the amino acid sequence SEQ ID NO. 6, said recognition molecule specifically binding the glycosylated MUC1 tumor epitope. Advantageously, said recognition molecules also have at least one of the following properties:
f) An increase in binding by a factor of >20 according to a).
g) Binding to non-glycosylated multiple tandem repeats as under b) with a factor of the ratio of binding to a non-glycosylated MUC1 tandem repeat with 5 tandem repeats to a non-glycosylated MUC1 peptide with one tandem repeat of >8 (sequence of peptides and test method see Example 5). The test method for the determination of said factor is illustrated in more detail in Example 5.2.
h) An increase of binding strength by increasing the number of glycosylated tandem repeats (multiple glycosylated PDTR region) (see Example 5.3).
Advantageously, other preferred recognition molecules possess all of the binding properties a) through h).
The recognition molecules according to the invention combine the properties described above, thus being advantageous in tumor diagnosis and therapy. They differ from well-known antibodies not only as a result of their new sequences, but also as a result of their fine specificity to MUC1 by specifically binding the glycosylated MUC1 tumor epitope, exhibiting minor binding to MUC1 in the serum of colon carcinoma patients, virtually no binding to normal colon tissue and strong binding to colon tumor tissue. Moreover, the recognition molecules of the invention recognize colon tumors already as in situ carcinomas, but fail to recognize mild dysplasias, thereby differentiating between dangerous tumors and benign diseases. Given such properties and their high affinity, they are particularly suitable for therapeutic as well as diagnostic use, thereby offering advantages over well-known MUC1 antibodies.
Amongst the wide variety of well-known MUC1 antibodies, there has been no antibody having corresponding properties as yet, which is why the combination of properties of the recognition molecules according to the invention is surprising.
As can be seen from the above, the recognition molecules according to the invention are superior to conventional MUC1 antibodies.
Consequently, conventional antibodies have significant disadvantages compared to the recognition molecules of the invention, as will be briefly exemplified below.
Examples of differences in fine specificity: in the investigations set forth in Example 5.1, HMFG-1 (U.S. Pat. No. 5,804,187, U.S. Pat. No. 6,315,997) and C595 (WO 02/44217) bind to MUC1 peptides independently of any glycosylation and therefore do not bind to the glycosylated MUC1 tumor epitope. For example, HMFG-1 also binds to normal colon tissue. As can be seen, they do not exhibit the advantageous binding of the recognition molecules according to the invention. According to the test in Example 5.1, SM3 (U.S. Pat. No. 5,683,674) obtained by immunization with MUC1 derived from human non-tumor material (milk fat droplets) binds glycosylated and non-glycosylated MUC1-derived peptides to virtually the same extent, with a slight increase by a factor of about 1.5, thus failing to exhibit such advantageous binding to the tumor epitope. In addition, SM3 fails to show any pronounced dependence on the number of MUC1 tandem repeats, neither non-glycosylated nor glycosylated ones (Examples 5.2 and 5.3). DF3 has been described as an MUC1-specific antibody binding to MUC1-derived peptides preferably in a glycosylation-independent fashion (WO 93/20841, U.S. Pat. No. 5,506,343). Furthermore, binding of DF3 to MUC1 or MUC1-bearing tumor cells is dramatically reduced or entirely inhibited by neuraminidase treatment (Dai J. et al., 1998; Hinoda et al., 1992). In addition, HMFG-1 and DF3 give strong binding to tumor MUC1 in serum, especially in mammary carcinoma patients, but also in colon carcinoma patients (see Example 11). Thus, they fail to exhibit the advantageous binding properties of the recognition molecules according to the invention.
The recognition molecules are characterized according to the foregoing definition, essentially via their binding properties with respect to colon normal and tumor tissues. As can be seen, said recognition molecules are advantageous in therapy and diagnostics of colon tumors and metastases thereof when compared to conventional anti-MUC1 antibodies. However, said recognition molecules are advantageous not only in the treatment and diagnosis of colon carcinomas and other gastrointestinal tumors, but also in other tumor diseases and metastases, preferably MUC1-positive tumor diseases and metastases, e.g. mammary carcinomas, gastrointestinal tumors, including colon carcinomas, stomach carcinomas, large intestine cancer and small intestine cancer, pancreas carcinomas, ovarian carcinomas, lung cancer, renal cell carcinomas, multiple myeloma and/or metastases thereof. This is substantiated by the data of Example 6, demonstrating specific binding of the recognition molecules to tumor cells in various tumor diseases. The detailed description of the binding properties with respect to colon carcinomas is to substantiate the advantages and establish suitable parameters for the binding characteristics of the recognition molecules according to the invention.
In a preferred embodiment a recognition molecule of the invention specifically binding the glycosylated MUC1 tumor epitope comprises:
a) a first amino acid sequence which contains the amino acid sequence SEQ ID No. 1 or 2 and the amino acid sequence SEQ ID No. 3 or 4 and the amino acid sequence SEQ ID No. 5 or 6; and
b) a second amino acid sequence which contains the amino acid sequence SEQ ID No. 7 or 8 and the amino acid sequence SEQ ID No. 9 or 10 and the amino acid sequence SEQ ID No. 11 or 12.
The first and the second amino acid sequence can be present on one or more and preferably on two polypeptides.
For the sake of simplicity, the recognition molecules of the invention specifically binding the glycosylated MUC1 tumor epitope in the meaning of the invention will also be referred to as MUC1-binding or specific recognition molecules hereinbelow.
The preferred MUC1-binding recognition molecules according to the invention are characterized in that a defined set of single amino acid sequences is included therein. The combination of amino acid sequences results in a structure of said recognition molecules which—as a property—exhibits the above-described combination of binding properties with respect to the glycosylated MUC1 tumor epitope. The amino acid sequence of said recognition molecules includes one or two triplets of defined sequences. These sequences represent the binding domains and define the specificity of the recognition molecules. The 1-triplet recognition molecule comprises the amino acid sequence SEQ ID NO. 1 or 2, the amino acid sequence SEQ ID NO. 3 or 4 and the amino acid sequence SEQ ID NO. 5 or 6. MUC1-specific recognition molecules defined by two triplets comprise the amino acid sequence SEQ ID NO. 1 or 2, the amino acid sequence SEQ ID NO. 3 or 4 and the amino acid sequence SEQ ID NO. 5 or 6 for the first triplet, and the amino acid sequence SEQ ID NO. 7 or 8, the amino acid sequence SEQ ID NO. 9 or 10 and the amino acid sequence SEQ ID NO. 11 or 12 for the second triplet. The first and the second triplet can be present either on one or on more polypeptide chains which, in the latter case, together form the binding recognition molecule. Further, in the meaning of the invention, these triplets are referred to as triplet sequence 1 for the first amino acid sequence being included and as triplet sequence 2 for the second amino acid sequence being included; see definition a) and b) of the description above. According to the invention, the recognition molecule can be an antibody, particularly a murine, chimeric or human IgG or IgM, an scFv structure or another antibody-derived fragment such as Fab, F(ab)2, Fv or F(v)2 fragments.
In a preferred embodiment the MUC1-binding recognition molecules of the invention comprise the amino acid sequence SEQ ID NO. 1, the amino acid sequence SEQ ID NO. 3 and the amino acid sequence SEQ ID NO. 5 as triplet sequence 1.
In another preferred embodiment the MUC1-binding recognition molecules of the invention comprise the amino acid sequence SEQ ID NO. 2, the amino acid sequence SEQ ID NO. 4 and the amino acid sequence SEQ ID NO. 6 as triplet sequence 1.
In a preferred embodiment the MUC1-binding recognition molecules of the invention comprise the amino acid sequence SEQ ID NO. 1, the amino acid sequence SEQ ID NO. 3 and the amino acid sequence SEQ ID NO. 5 as triplet sequence 1, and the amino acid sequence SEQ ID NO. 7, the amino acid sequence SEQ ID NO. 9 and the amino acid sequence SEQ ID NO. 11 as triplet sequence 2.
In another preferred embodiment the MUC1-binding recognition molecules of the invention comprise the amino acid sequence SEQ ID NO. 2, the amino acid sequence SEQ ID NO. 4 and the amino acid sequence SEQ ID NO. 6 as triplet sequence 1, and the amino acid sequence SEQ ID NO. 8, the amino acid sequence SEQ ID NO. 10 and the amino acid sequence SEQ ID NO. 12 as triplet sequence 2.
Another embodiment of the invention relates to recognition molecules wherein at least one amino acid sequence of SEQ ID Nos. 1 to 12 has been modified by mutation, deletion and/or insertion, but wherein the property of binding specificity towards the glycosylated MUC1 tumor epitope continues to exist. Advantageously, this is utilized to improve the recognition molecules, e.g. with respect to affinity, solubility and/or producibility.
In a preferred embodiment, modification of a recognition molecule is effected by one or more mutations in one or more amino acid sequences selected from SEQ ID Nos. 1 to 12, wherein single amino acids are replaced by amino acids having analogous physicochemical properties which, advantageously, do not fundamentally change the three-dimensional structure of the binding domain in the recognition molecules, so that the MUC1 specificity of the recognition molecules is retained. Amino acids having analogous physicochemical properties in the meaning of the invention can be summarized into 6 separate groups and are illustrated in Table 1.







TABLE 1







Amino acids with analogous physicochemical


properties regardless of molecular size












Property or functional group
Amino acid








aliphatic
glycine





alanine





valine





leucine





isoleucine




hydroxy group
serine





threonine




carboxyl group
aspartic acid





glutamic acid




amide group
asparagine





glutamine




amino group
lysine





arginine




aromatic
phenylalanine





tyrosine





tryptophane










In another preferred embodiment of the recognition molecules of the invention specifically binding MUC1, at least one amino acid sequence of amino acid sequences SEQ ID Nos. 1, 2, 3, 4, 7, 8, 11 and/or 12 is replaced by canonical structure variants or equivalent structures having the amino acid sequences SEQ ID Nos. 13 to 31, with SEQ ID NO. 1 or 2 being replaced by a sequence of sequences SEQ ID Nos. 13 to 20 (CDRH1), SEQ ID NO. 3 or 4 by a sequence of sequences SEQ ID Nos. 21 to 23 (CDRH2), SEQ ID NO. 7 or 8 by a sequence of sequences SEQ ID Nos. 24 to 29 (CDRL1), and SEQ ID NO. 11 or 12 by a sequence of sequences SEQ ID Nos. 30 to 31 (CDRL3).
The general relationship between an amino acid sequence and the tertiary structure of loops formed by these sequences is well-known to those skilled in the art and has been investigated in detail [Rooman et al., 1989; Martin, Thornton, 1996]. Immunoglobulins represent a unique example. By analyzing the loop conformations of the hypervariable regions (complementarity determining regions, CDRs) in the light and heavy chains of antibody molecules, so-called canonical classes have been defined [Chothia, Lesk, 1987; Chothia et al., 1986, 1989, 1992; Wu, Cygler, 1993]. On this basis, the canonical structure variants SEQ ID Nos. 13 to 31 of SEQ ID Nos. 1, 2, 3, 4, 7, 8, 11 and 12 have been derived. According to the invention, equivalent canonical structure variants are understood to be amino acid sequences differing from the initial sequences to such an extent that at least one amino acid is replaced in well-defined positions without changing the canonical class.
The amino acid sequences SEQ ID Nos. 1 to 12 or their modifications in a MUC1-specific recognition molecule in the meaning of the invention form spatial structures, e.g. so-called loops which are characterized by possessing a definable tertiary structure and/or quaternary structure. The binding region of a recognition molecule with the MUC1 antigen is formed by amino acid residues which are provided by up to six variable loops on the surface of the molecule and specifically interact with MUC1.
In another embodiment of the invention, recognition molecules specifically binding MUC1 are provided, wherein at least one sequence of the triplet sequences not immediately involved in the interaction with the MUC1 antigen is omitted.
In another embodiment the recognition molecules comprise at least one of the amino acid sequences SEQ ID Nos. 1 to 12 or the above-described variants thereof in duplicate or multiplicity, and such doubles may also be present in the form of variants of the same amino acid sequence. All recognition molecules described in this section advantageously recognize the MUC1 antigen in a specific manner. For easier comprehension, the above recognition molecules as well, which, strictly speaking, do not bear any triplet sequences as a result of omitting or multiplying sequences, will nevertheless be referred to as triplet sequence 1 or triplet sequence 2 hereinafter.
In another embodiment the recognition molecules of the invention specifically binding the glycosylated MUC1 tumor epitope comprise amino acid sequences having a homology of at least 60%, preferably 70%, more preferably 80%, especially preferably 90%, with respect to the sequences SEQ ID Nos. 1 to 12.
Furthermore, the recognition molecules in the meaning of the invention may comprise framework sequences which separate the comprising amino acid sequences, i.e. amino acid sequence SEQ ID NO. 1 or 2 and amino acid sequence SEQ ID NO. 3 or 4 and amino acid sequence SEQ ID No. 5 or 6, or the above-described variants thereof, and framework sequences which separate the amino acid sequence SEQ ID No. 7 or 8 and the amino acid sequence SEQ ID No. 9 or 10 and the amino acid sequence SEQ ID No. 11 or 12, or the above-described variants thereof. The first and the second amino acid sequence can be present on one or more and preferably two polypeptide chains. In the meaning of the invention, such framework sequences are also referred to as spacers and may vary in length and sequence. This expressly includes those recognition molecules wherein not all of the amino acid sequences SEQ ID Nos. 1 to 12 or the above-described variants thereof are separated by spacers. Moreover, the recognition molecules preferably have additional flanking amino acid sequences likewise referred to as framework sequences in the meaning of the invention.
More specifically, the framework sequences have the function of forming the above-described amino acid sequences responsible for or involved in MUC1-specific binding of the recognition molecules into a suitable configuration and spatial structure so as to allow binding to MUC1. It can be envisaged that the amino acid sequences SEQ ID NO. 1 to NO. 12 without at least one additional amino acid sequence as framework sequence are incapable of binding the MUC1 antigen in a specific fashion in the meaning of the invention. Moreover, the framework sequences may provide the recognition molecules with e.g. the required biological and chemical stability, so that the spatial structure can be built up effectively and maintained for function and use in a suitable functional form which includes MUC1 binding.
In a preferred embodiment the triplet sequences are introduced in existing proteins by replacement of amino acid sequences and/or by addition, the existing protein sequences serving as framework sequences in the meaning of the invention, or framework sequences being taken from suitable proteins. For example, such framework sequences can be modified by means of mutations, deletions or insertions. Methods of molecular biology, biochemistry and protein engineering per se known to those skilled in the art can be employed for this purpose. Preferred proteins for this purpose are proteins of the immunoglobulin superfamily, protease inhibitors, lectins, helix bundle proteins and lipocalins, such as disclosed in: Nygren and Uhlen, 1997; Nuttall S D et al., 1999; and Skerra, 2000.
In another preferred embodiment the framework sequences are antibody framework sequences from one or various species or amino acid sequences mimicking the consensus sequence of framework sequences of murine, human antibodies and/or antibodies of other mammals. A consensus sequence is an idealized sequence wherein the most frequently occurring amino acid is representative in each position when comparing a large number of existing sequences, e.g. from antibody data bases. The recognition molecules preferred herein are characterized in that the framework sequences for the first triplet sequence 1 comprising the amino acid sequence SEQ ID NO. 1 or 2, the amino acid sequence SEQ ID NO. 3 or 4 and the amino acid sequence SEQ ID NO. 5 or 6, or the above-described variants, are antibody framework sequences of the variable heavy chain, VH, in the literature also referred to as framework sequences, and the framework sequences for the triplet sequence 2 comprising the amino acid sequence SEQ ID NO. 7 or 8, the amino acid sequence SEQ ID NO. 9 or 10 and the amino acid sequence SEQ ID NO. 11 or 12, or the above-described variants thereof, are antibody framework sequences of the variable light chain, VL.
Also preferred are antibody framework sequences of antibodies from mammals, with antibody framework sequences of human and/or murine origin being particularly preferred. The framework sequences can be combined from antibody framework sequences of various species. Such antibody framework sequences are well-known to those skilled in the art and can be obtained from various data bases such as the Kabat data base (immuno.bme.nwu.edu) or the National Center for Biotechnology Information data base (www.ncbi.nlm.nih.gov). Likewise, these antibody framework structures can be extended by additional amino acids and/or modified by one or more mutations, e.g. deletions and/or insertions, with specific binding to the glycosylated MUC1 tumor epitope being retained.
When combining the triplet sequences with antibody framework sequences in a preferred variant of the invention, the recognition molecule represents a variable chain of an antibody or a structure derived therefrom.
Particularly preferred antibody framework sequences as framework sequences in the meaning of the invention are the amino acid sequences corresponding to FRH1, FRH2, FRH3 and FHR4 in Table 2 for the variable heavy chain and the amino acid sequences corresponding to FRL1, FRL2, FRL3 and FRL4 in Table 2 for the variable light chain, the amino acid sequences of the triplet sequences 1 and 2 with SEQ ID Nos. 1 to 12 corresponding to the corresponding CDR regions of the antibodies. The variable heavy (VH) and light (VL) antibody chains, respectively, are composed as follows: VH: FRH1-CDRH1-FRH2-CDRH2-FRH3-CDRH3-FRH4, and VL: FRL1-CDRL1-FRL2-CDRL2-FRL3-CDRL3-FRL4. Table 2 illustrates the positions in detail. The positions of the individual amino acids or amino acid sequences correspond to the numbering of amino acids in antibody molecules according to Kabat.












TABLE 2










Amino acid or






amino acid



Name
Position range
Pos.
sequence









FRH1
1 to 30
 1
E





 2
V





 3
K





 4
L





 5
V





 6
E





 7
S





 8
G





 9
G





10
G





11
L





12
V





13
Q





14
P





15
G





16
G





17
S





18
M





19
K





20
L





21
S





22
C





23
A or V





24
A, V, S or T





25
S





26
G





27
Y, F, S or D





28
T





29
F, L or I





30
S



CDRH1
31 to 35

SEQ ID NO.






1 or 2 and






variants



FRH2
36 to 49
36
W





37
V





38
R





39
Q





40
S





41
P





42
E





43
K





44
G





45
L





46
E





47
W





48
V





49
A



CDRH2
50 to 65, with positions

SEQ ID NO.




52a, 52b and 52c

3 or 4 and




introduced in addition

variants



FRH3
66 to 94
66
R





67
F





68
T





69
I





70
S





71
R





72
D





73
D or V





74
S





75
K





76
S





77
S





78
V





79
Y or S





80
L





81
Q





82
M





 82a
N





 82b
N





 82c
L





83
R





84
A or V





85
E





86
D





87
T





88
G





89
I





90
Y





91
Y





92
C





93
T





94
R, G, N, K or S



CDRH3
95 to 102; pos. 100 non-

SEQ ID NO.




existent and pos. 99

5 or 6 and




partially nonexistent

variants



FRH4
103 to 113
103 
W





104 
G





105 
Q





106 
G





107 
T





108 
T





109 
L





110 
T





111 
V





112 
S





113 
S or A



FRL1
1 to 23
 1
D





 2
I, V or L





 3
V





 4
M or L





 5
T





 6
Q





 7
T or A





 8
P or A





 9
L or F





10
S





11
L or N





12
P





13
V





14
S or T





15
L





16
G





17
D or T





18
Q or S





19
A





20
S





21
I





22
S





23
C



CDRL1
24 to 34, with positions

SEQ ID NO.




27a, 27b, 27c, 27d and 27e

7 or 8 and




introduced in addition

variants



FRL2
35 to 49
35
W





36
Y





37
L





38
Q





39
K





40
P





41
G





42
Q or L





43
S





44
P





45
K or Q





46
L





47
L





48
I or V





49
Y



CDRL2
50 to 56

SEQ ID NO.






9 or 10 and






variants



FRL3
57 to 88
57
G





58
V





59
P





60
D





61
R





62
F





63
S





64
G or S





65
S





66
G





67
S





68
G





69
T





70
D





71
F





72
T





73
L





74
K or R





75
I





76
S





77
R





78
V





79
E





80
A





81
E





82
D





83
L or V





84
G





85
V





86
Y





87
Y





88
C



CDRL3
89 to 97

SEQ ID NO.






11 or 12 and






variants



FRL4
98 to 108
98
F





99
G





100 
G or D





101 
G





102 
T





103 
K





104 
L





105 
E





106 
I or L





106a
K





107 
R





108 
A










The amino acid sequences SEQ ID Nos. 32 and 33 correspond to amino acid sequences with preferred framework sequences for the variable heavy chain. The amino acid sequences SEQ ID Nos. 34 and 35 correspond to amino acid sequences with preferred framework sequences for the variable light chain. Preferred is the combination SEQ ID NO. 32 and 34. Also preferred is the combination SEQ ID NO. 33 and 35.
The techniques and methods to be used in the production of these sequences are well-known to those skilled in the art, and a person skilled in the art will be able to select suitable framework sequences and/or mutations.
In the meaning of the invention, MUC1-specific recognition molecules can be present in different formats. The basic structure of the recognition molecule is one (or more) polypeptide chain(s) comprising the above-described inventive triplet sequence 1 or triplet sequences 1 and 2 and framework sequences. For example, the amino acid sequence of the variable heavy chain is linked with the framework sequences and triplet sequences 1, and the amino acid sequence of the variable light chain is linked with the framework sequences and the triplet sequences 2 in a non-covalent or covalent fashion and can be situated on one or more polypeptide chains. A plurality of polypeptide chains can be present in covalently linked—e.g. via disulfide bridges—or non-covalently linked form as recognition molecule.
In particular, the various inventive formats of recognition molecules include linking of said triplet sequences with amino acid sequences beyond the framework sequences described above. In a preferred variant the recognition molecules according to the invention therefore comprise further accessory sequences apart from the triplet sequences and framework sequences. More specifically, accessory sequences are amino acid sequences which primarily are not involved in the spatial configuration of the triplet sequences, such as in the form of framework sequences, but may have an advantageous influence thereon as a result of secondary or tertiary interactions. For example, accessory sequences in the form of constant domains of an antibody will stabilize the antibody, causing dimerization, thereby effecting improved binding of the antibody, or, for instance, fusion of an scFv with a domain of a bacteriophage coat protein causes an activity increase of scFv binding as disclosed in Jensen K B et al., 2002, for example.
In a preferred embodiment the recognition molecules comprise amino acid sequences with framework sequences on an antibody basis and further accessory sequences in addition to the triplet sequences. In particular, the accessory sequences assume at least one of the following functions:
a) linking a triplet sequence with its correspondingly suited framework sequences with at least one other triplet sequence with its correspondingly suited framework sequences in order to create or improve binding capability;
b) stabilization of domains, e.g. by means of a linker between two protein domains or amino acid sequences which undergo interaction with others in the same or in a second chain;
c) effector functions for immunological purposes, e.g. by fusion with the Fc portion of antibodies, chemokines, cytokines, growth factors or portions thereof, or antibodies having a different specificity, or fragments thereof, for the recruitment of cells of the immune system, e.g. macrophages or components of the complement system;
d) fusion with tags, e.g. multimerization sequences—for example, μ-tail sequence from IgM or association domain from p53 or MBL—for multimerization of the MUC1-binding portions for multivalent binding or for purification of recognition molecules, e.g. His-tag, or for detection, e.g. myc-tag, or for labelling or chelating of recognition molecules e.g. by high-lysine sequences. Suitable structures are well-known to those skilled in the art or can be derived from the prior art by logical deduction.
Further preferred embodiments are recognition molecules according to the invention comprising the following formats: single-chain antibody fragment (scFv), Fv fragment, Fab fragment, F(ab)2 fragment, multibody (dia-, tria-, tetra-body), immunoglobulin of the IgG, IgM, IgA, IgE, IgD isotypes or subclasses thereof, e.g. IgG1, or immunoglobulin derived recognition molecules comprising at least one constant domain.
According to the invention, “multibody” is understood to be a single-chain antibody fragment, with the variable heavy chain and the variable light chain being linked directly or via a linker in such a way that association of the VH and VL takes place in an intermolecular fashion only, rather than intramolecular, thereby forming dia-, tria- and/or tetrabodies.
According to the invention, a “linker” is understood to be an amino acid or an amino acid sequence having up to 20 amino acids which links the variable heavy chain and the variable light chain in a single-chain antibody fragment.
In a preferred embodiment the recognition molecules of the invention are composed of a heavy and a light polypeptide chain, each of the amino acid sequences of the heavy and light chains comprising one of the above-described triplet structures representing the CDR regions of the antibody, the corresponding antibody framework sequences representing the framework sequences of the antibody, and accessory sequences comprising at least one of the constant domains of the antibody isotype. The two chains can form covalent bonds with each other. The constant regions and variable regions may include sequences of antibodies from one or more species. Portions of constant domains or complete constant domains can be deleted or mutated in order to e.g. modify the effector function of accessory sequences, e.g. to prevent or improve binding to Fc receptors. In a preferred embodiment the recognition molecule is a murine, chimerized, humanized or human antibody or antibody fragment. For example, chimerization is effected by linking the variable antibody domains with constant antibody domains or fragments of a constant domain of antibodies from different species. Preferred are sequences of constant domains of human antibodies. Examples of murine antibodies are mIgG-Panko1 consisting of the sequences SEQ ID Nos. 60 and 62, and mIgG-Panko2 consisting of the sequences SEQ ID NO. 61 and 63. Examples of chimeric antibodies are the recognition molecules cIgG-Panko1 consisting of the sequences SEQ ID Nos. 64 and 68, and cIgG-Panko2 consisting of the sequences SEQ ID Nos. 65 and 69.
The antibody framework sequences can be selected in such a way that the sequences are largely homologous to human antibody sequences. Selection as to the species origin of the framework sequences will also depend on the use. Thus, for therapeutic use in particular fields, highest possible levels of human framework sequences are preferred, particularly in those cases where human anti-mouse antibody response (HAMA) is to be avoided. In other therapeutic fields, a xeno-component is advantageous because it effects additional stimulation of the immune system. A combination of both is particularly suitable in some cases, especially in those cases where a xeno-component is advantageous in initial immunization and a species-compatible, i.e. a human component, is advantageous in later uses.
Homology to human consensus sequences is preferred, with HuHIII being preferred for the variable heavy chain, and HuKII being preferred for the variable light chain. Particularly preferred is homology to human germ line sequences which are known to those skilled in the art and can be obtained from the V BASE data base (www.mrccpe.cam.ac.uk) or from the data base of the National Center for Biotechnology Information (www.ncbi.nlm.nih.gov).
The techniques and methods to be used in the production of these sequences are well-known to those skilled in the art, and a person skilled in the art will also be able to select suitable human sequences and/or perform possibly required mutations of said sequences.
In another embodiment the triplet sequences generally corresponding to the binding loops (CDR regions) and preferably having high homologies to the corresponding sequence regions in the human germ line sequence are additionally adapted thereto step by step, using simple mutations, without impairing the specific binding to the glycosylated MUC1 tumor epitope. Recognition molecules having these sequences will be referred to as partially human antibodies or antibody fragments herein.
In another preferred embodiment, specific amino acids of antibody framework sequences of a species are replaced by others in order to generate less immunogenic regions in general. This involves technologies per se known to those skilled in the art, e.g. technologies of humanization, e.g. CDR grafting, resurfacing, chain shuffling with mutations and deimmunization by mutation or deletion of human MHC epitopes.
In a preferred embodiment, this involves an IgM-derived recognition molecule having the corresponding constant domains of an IgM, preferably human sequences. In the meaning of the invention, immunoglobulins are composed of a heavy chain and a light chain of an antibody, and 2 light chains and 2 heavy chains preferably represent a unit. Immunoglobulins of the IgM type usually consist of 5 such units additionally linked via the J chain to form disulfide bridges.
In a particularly preferred embodiment the J chain is absent, with multimerization of the subunits likewise taking place, in which case hexa- and pentameric structures can be present. Examples of chimeric IgM antibodies are the recognition molecules cIgM-Panko1 consisting of the sequences SEQ ID Nos. 66 and 68, and cIgM-Panko2 consisting of the sequences SEQ ID Nos. 67 and 69.
In a preferred embodiment of such recognition molecules, single-chain antibody fragments are involved, comprising a triplet structure 1 with the corresponding antibody framework sequences described above, which represent the CDR regions of the antibody and framework sequences of the variable domain of the heavy chain of antibodies, and a triplet structure 2 with the corresponding antibody framework sequences described above, which represent the CDR regions of the antibody and framework sequences of the variable domain of the light chain of antibodies, which are covalently linked in the form of a fusion protein. Here, the sequences are linked directly or via a linker.
Preferred in this case are scFv formats with no linker or with a linker 1 to 9 amino acids in length. The scFv antibodies form multimeric structures (for example, dia-, tria-, tetrabodies) which, in the meaning of the invention, are also referred to as multibodies and exhibit higher avidity to the glycosylated MUC1 tumor epitope as a result of multivalence. As set forth in Example 8, the multibody having the sequence SEQ ID NO. 45 binds many times better to the breast tumor cell line T47D in a radioactive cell binding test than the scFv antibody having the sequence SEQ ID NO. 36. These multivalent constructs in a dia-/triabody format are particularly preferred embodiments of the invention, being advantageous in tumor therapy as a result of improved pharmacokinetic properties. Preferred sequences are the sequences SEQ ID Nos. 36 to 47. Particularly preferred are the sequences SEQ ID Nos. 48 to 59.
Particularly preferred embodiments of the recognition molecules according to the invention are recognition molecules comprising the sequences SEQ ID Nos. 48 to 59, SEQ ID Nos. 61, 63, 65 or 69, because they combine all of the binding properties a) to h), as will be described in more detail in the examples.
In another preferred embodiment the recognition molecules are fused, chemically coupled, covalently or non-covalently associated with (i) immunoglobulin domains of various species, (ii) enzyme molecules, (iii) interaction domains, (iv) signal sequences, (v) fluorescent dyes, (vi) toxins, (vii) catalytic antibodies, (viii) one or more antibodies or antibody fragments with different specificity, (ix) cytolytic components, (x) immunomodulators, (xi) immunoeffectors, (xii) MHC class I or class II antigens, (xiii) chelating agents for radioactive labelling, (xiv) radioisotopes, (xv) liposomes, (xvi) transmembrane domains, (xvii) viruses and/or cells. Cells can be bacterial, yeast, plant, insect and/or mammal cells. Mammal cells are preferred, e.g. murine, human or hamster cells. Effector cells are particularly preferred. “Effector cells” in the meaning of the invention are cells, preferably human cells, which mediate immune reactions, such as macrophages, dendritic cells, lymphocytes and NK cells. In particular, the recognition molecules can also be fused with a tag allowing detection of the recognition molecule and purification thereof, such as myc-tag or His-tag. In the meaning of the invention, such combined molecules will be referred to as “constructs.” Technologies for the production of such constructs are well-known to those skilled in the art, and a person skilled in the art will be able to select suitable sequences and components and link them with the recognition molecules of the invention in a suitable manner.
In another preferred embodiment the above-described recognition molecules based on antibodies or antibody fragments are fused with peptides or proteins not derived from immunoglobulins. For example, the multimerization domain of a non-immunoglobulin molecule is fused with an scFv, especially the C-terminal end of the α-chain of the C4 binding protein, as described in Tonye Libyh M. et al., 1997, thereby constructing a multivalent recognition molecule.
In another embodiment, an scFv is fused with a transmembrane domain of a non-immunoglobulin molecule, e.g. with the transmembrane domain of c-erb B2, h-PDGFR, human transferrin receptor, or human asialoglycoprotein receptor (Liao et al., 2000), thereby enabling expression of binding molecules on the surface of cells.
Another preferred embodiment of the invention comprises recognition molecules according to the invention, additionally comprising amino acid sequences specifically binding to macrophages or other immunoeffector cells. For example, the recognition molecules of the invention further comprise an antibody binding site against CD64, and, in the form of a bispecific antibody or antibody fragment (diabodies), binding of macrophages to MUC1-positive tumor cells takes place, resulting in combatting and/or destruction thereof.
A preferred embodiment of the invention relates to radio-labelled MUC1-specific recognition molecules. One preferred form involves recognition molecules based on antibodies or antibody fragments. Another preferred embodiment involves radiolabelled recognition molecules of the invention in single-chain format (including the form of dia-, tria-, tetrabodies). Other preferred forms are radiolabelled single-chain antibody fragments and complete immunoglobulins, e.g. inventive murine, chimeric or humanized IgG or IgM antibodies or humanized antibody fragments. It goes without saying that the invention is not restricted to these antibodies, said radioactive labels and said formats of antibodies.
In a preferred embodiment, radiolabelled or toxin-labelled recognition molecules are concerned, which have xenogenic components, e.g. murine components, in the Fc portion of the antibody, so that the radioactive antibodies have a shorter residence time in the blood of a human, being eliminated more rapidly. Examples of such recognition molecules are mIgG-Panko1 consisting of the sequences SEQ ID Nos. 60 and 62, and mIgG-Panko2 consisting of the sequences SEQ ID Nos. 61 and 63. Another preferred variant are antibody-based recognition molecules, wherein the murine components are minimized, but have those murine components included that are responsible for removal from the blood (clearance). Ways of determining the appropriate components are well-known to those skilled in the art.
Antibody fragments such as the preferred multivalent scFv fragments, especially with no or very short linker, offer an advantage in the targeting of solid tumors compared to intact monoclonal antibodies. With intact antibodies exhibiting specific accumulation within the tumor area in biodistribution studies, an inhomogeneous antibody distribution with primary accumulation in the peripheral regions is noted when precisely investigating the tumor. Due to tumor necroses, inhomogeneous antigen distribution and increased interstitial tissue pressure, it is not possible to reach central portions of the tumor with such antibody constructs. In contrast, smaller antibody fragments show rapid tumor labelling, penetrate deeper into the tumor, and also, are removed relatively rapidly from the bloodstream. However, the dissociation constant of monovalent antibody fragments such as Fabs or scFv frequently is excessively low, resulting in a short residence time on the tumor cells. For this reason, multivalent antibody constructs such as multibodies (diabodies, tria-/tetrabodies), F(ab′)2 and other minibodies (multivalent antibody constructs consisting of binding domain and multimerization sequence, e.g. scFv and CH3 domain of an IgG) offer many advantages in tumor therapy. Multivalent constructs in a dia-/triabody format (multibodies) are preferred embodiments of the invention, they are advantageous in tumor therapy as a result of improved pharmacokinetic properties and have been further developed for use in tumor therapy. They can be used as vehicles for specific accumulation of e.g. cytotoxic substances such as chemotherapeutic agents or radionuclides in a tumor. By suitably selecting the radionuclides, it is possible to destroy tumor cells over a distance of several cell diameters, so that even antigen-negative tumor cells in a tumor area can be covered and poor penetration of antibodies into solid tumors can be compensated at least in part.
A particularly preferred embodiment of the invention involves radiolabelled multibodies which combine particularly advantageous pharmacokinetic properties and, in combination, have improved tumor retention, tumor penetration, serum half-life and serum to tumor distribution ratio compared to complete immunoglobulins and scFv. Further advantages are high avidity and bacterial expression, allowing low-cost production of such recognition molecules. Advantageously, this specific format of recognition molecules according to the invention is therefore suitable for use preferably in the treatment of small primary tumors, metastases and minimal residual diseases.
A preferred embodiment of the invention involves nonradiolabelled recognition molecules. One preferred form involves recognition molecules based on antibodies or antibody fragments.
Other preferred embodiments are toxin- or cytostatic agent-coupled chimerized or humanized IgG- and IgM-based recognition molecules of the invention and, in particular, multi-bodies (dia-, tria-, tetrabodies) having particularly advantageous pharmacokinetic properties as set forth above.
Another preferred embodiment involves liposomes which are loaded with e.g. toxins or cytostatic agents and bear recognition molecules of the invention on the surface thereof.
A person skilled in the art will be able to select suitable radioisotopes, toxins and cytostatic agents. Suitable techniques, methods, dosages and formulations are well-known to those skilled in the art.
Another preferred embodiment of the invention involves effector cells of the immune system having recognition molecules of the invention bound on the surface thereof, which direct/address the effector cells to MUC1-bearing tumor cells, thereby mediating control and/or destruction thereof. Preferred effector cells are macrophages, dendritic cells and NK cells obtained from the patient and coupled ex vivo with the recognition molecules. Also preferred are cell lines of these types of cells. Linking is effected e.g. by means of bispecific recognition molecules which, in addition to MUC1-specific components, comprise amino acids which mediate binding to the effector cells. For example, these are bispecific antibodies, complement components or constant domains of antibodies.
Another preferred embodiment involves macrophages from a patient which, following collection, are coupled with a bispecific antibody, e.g. in the form of a complete antibody, preferably chemically coupled Fab fragments or, more preferably, diabodies which, on the one hand, recognize CD64 and, on the other hand, are MUC1-specific according to the invention. These macrophages, which bear the bispecific recognition molecules via CD64 specificity, are re-administered to the patient in a suitable formulation in order to combat the MUC1-positive tumor. The techniques used to this end, as well as suitable methods, dosages and formulations are well-known to those skilled in the art. Another preferred embodiment involves macrophages from a patient which, following collection, are coupled with a MUC1-specific antibody or antibody fragment of the invention comprising the constant portion of an antibody which binds to macrophages via the per se known Fc receptors. The recognition molecules can bind to the macrophages either as complete antibodies, preferably chimeric or humanized IgG or IgM, or as antibody fragment, e.g. scFv, Fab or multi-bodies in the form of a fusion protein or chemically coupled with a portion of the constant domain of antibodies, which portion is well-known to those skilled in the art. The macrophages bearing the recognition molecules are re-administered to the patient in a suitable formulation in order to combat the MUC1-positive tumor. The techniques used to this end, as well as suitable methods, dosages and formulations are well-known to those skilled in the art.
Another preferred embodiment involves cell lines or cells from the body, such as the above-described effector cells which are transfected with molecules comprising the MUC1-specific recognition molecules of the invention and additional elements causing expression and anchoring in the membrane, e.g. transmembrane domain, and mediating activation of the effector cells upon contact with a MUC1-bearing tumor cell. The appropriate elements are well-known to those skilled in the art. For example, a dendritic cell line is transfected with a vector comprising a recognition molecule which comprises an inventive scFv or multibody and a transmembrane domain and an activating domain. In another example, macrophages are virally transfected to this end. The effector cells bearing the recognition molecules are re-administered to the patient in a suitable formulation in order to combat the MUC1-positive tumor. The techniques used to this end, as well as suitable methods, dosages and formulations are well-known to those skilled in the art.
The invention also relates to nucleic acid molecules comprising one or more genetic sequences which encode at least one of the above-described recognition molecules and/or constructs according to the invention. Owing to the degenerate genetic code, said nucleic acid molecules may have highly varying sequences. The selection of the codon also depends on the cell used to produce the recognition molecules, because different codons frequently are preferred in different cells from different organisms, and there may be a strong influence on the expression rate; for example, the arginine codons AGA and AGG preferably utilized in eukaryotic genes are rarely seen in bacteria where the codons CGC and CGU are clearly more frequent. In preferred embodiments the nucleic acid molecule of the invention is a genomic DNA, a cDNA and/or an RNA. The criteria of selecting suitable codons and the production of a suitable nucleic acid molecule are well-known to those skilled in the art.
Furthermore, the invention relates to vectors for the expression of recognition molecules, specifically in cells. In the meaning of the invention, a vector is understood to be a nucleic acid molecule according to the invention, which serves to express the recognition molecule and comprises a nucleic acid sequence which includes one or more genetic sequences encoding at least one of the above-described recognition molecules and which, in particular, includes at least one promoter effecting expression of the recognition molecule. Of course, vectors may comprise additional elements well-known to those skilled in the art, which are used e.g. in the propagation of vectors for the production in suitable cells and in cloning. The nucleic acid sequences can be present on one or more vectors; in a preferred embodiment, for example, the heavy chain of an immunoglobulin of the invention is encoded by one and the light chain by another vector. In another preferred embodiment of the invention the variable domain of the light chain and the variable domain of the heavy chain are encoded as fusion protein on the same vector under one promoter. Furthermore, in the meaning of the invention, nucleic acid sequences encoding portions of a recognition molecule can be expressed by different promoters well-known to those skilled in the art. In another embodiment, said different nucleic acid sequences can be present on one common vector. Each sequence can be expressed by its own—same or different—promoter, or the sequences can be present in a bicistronic vector under a promoter. In a preferred fashion, different expression rates of the components of recognition molecules are achieved by said different promoters, improving formation of the overall recognition molecule as compared to equal expression rate of different components. It is also preferred to use promoters which can be induced so as to improve expression of the recognition molecule. In a particularly preferred fashion the vectors also comprise the regulatory elements well-known to those skilled in the art, e.g. enhancers increasing expression of the recognition molecule or components thereof, e.g. the CMV enhancer or immunoglobulin enhancer sequences. The nucleic acid molecules and vectors preferably comprise additional nucleic acid sequences which are used as signal sequences for the secretion of recognition molecules or components thereof and are per se known to those skilled in the art, e.g. PelB, OmpA or MalE for prokaryotic cell systems, or the signal peptide of the T cell receptor, of immunoglobulin chains, oft-PA or EPO for eukaryotic cell systems [Boel et al., 2000; Herrera et al., 2000]. In an advantageous fashion, this facilitates the purification and/or improves the yield of recognition molecules. The methods for the production of the above-described nucleic acids and vectors, suitable promoters, enhancers and vector constructs, as well as the criteria for the selection thereof are well-known to those skilled in the art and will be explained in detail in the examples.
In a specific embodiment of the invention the vector according to the invention also comprises nucleic acid sequences encoding viral proteins. The virus itself will be referred to as one particular form of a vector, the genetic material of which comprises a nucleic acid sequence encoding a recognition molecule according to the invention. In a preferred form the recognition molecule is a fusion protein with a virus coat protein or components thereof, making it possible that not only the genetic material comprises the nucleic acid sequence of the recognition molecule, but also that the recognition molecule itself is present on the surface of the virus in a binding-active state, e.g. an scFv recognition molecule of the invention as a fusion protein with a coat protein of adenoviruses, poxviruses or vaccinia viruses suitable for gene-therapeutic uses. This mediates addressing the virus to a MUC1-expressing tumor cell, so that expression of the recognition molecule in the tumor cell takes place. This can be utilized in the expression of the recognition molecule in vivo in the organism or in vitro in a cell culture. In a preferred fashion, well-known systems are employed which use a helper virus for replication so as to ensure the safety of a gene-therapeutic method comprising said vector. Methods for the production of the above-described viral vectors, for the infection and expression of recognition molecules are well-known to those skilled in the art.
In another specific embodiment the vector of the invention comprises a fusion protein of a recognition molecule according to the invention and a protein or peptide specifically binding to a virus. Advantageously, the recognition molecules obtained can be used to address the virus to a MUC1-expressing cell. Thus, for example, transfer of the genetic material can be mediated via infections, thereby allowing expression of specific molecules—encoded by the genetic material of the virus—in cells in vivo in the organism in the form of a gene therapy or in vitro in a cell culture.
Furthermore, the invention relates to a method of obtaining said recognition molecules, comprising the incorporation of one or more vectors of the invention, which include one or more nucleic acid molecules of the invention, in a suitable host cell, culturing said host cell under suitable conditions, and providing one or more recognition molecules from the cells or from the culture medium. In the meaning of the invention, the term “incorporation of vectors” is understood to represent technologies per se known to those skilled in the art, by means of which said vector is introduced in a host cell, e.g. electroporation, transfection using cationic lipids, or infection, remaining therein in a transient or stable fashion. In the meaning of the invention, the term “providing one or more recognition molecules” is understood to represent technologies per se known to those skilled in the art, by means of which the recognition molecules expressed during the culturing process are obtained from the culture supernatant and/or from the cells, e.g. various protein-chemical purification steps, e.g. fractionating, concentrating, precipitating and/or chromatography. The techniques and procedures to be used in this method are well-known to those skilled in the art, and a person skilled in the art will also be able to select suitable host cells and culturing conditions, as well as methods for the provision from cells and/or culture supernatants. For example, as set forth above, a person skilled in the art will select nucleic acid sequences with suitable codons and promoter sequences adapted to the host cell so as to obtain highest possible expression of active recognition molecules. In a preferred embodiment a person skilled in the art will use e.g. affinity-chromatographic steps, e.g. chromatography on protein A or protein G or protein L, or e.g. metal ion affinity chromatography via an additionally introduced His-tag. This will be illustrated in more detail in the examples.
Apart from the steps explicitly mentioned above, the term “obtaining” also comprises additional steps such as pretreatment of the starting material or further treatments of the final product. Pretreatment procedures are per se known to those skilled in the art. In addition to the provision procedures described above, procedures of further treatment also comprise e.g. final composing and/or formulating the recognition molecule obtained by means of the production procedure into suitable forms of use and/or administration. The type of said forms of use and/or administration, e.g. solution, lyophilizate or tablet, will depend on the intended application. It is well-known to those skilled in the art which administration form is suitable for which purpose. Depending on the administration form, the recognition molecule produced using the method according to the invention can be present together with auxiliary agents, carriers or other active substances. Auxiliary agents are preferably adjuvants, other active substances, preferably immunostimulatory molecules such as interleukins. The recognition molecule produced using the method of the invention can also be chemically modified in further treatment steps. Preferably, the recognition molecule is suitably linked with one or more additional molecules, i.e. by chemical or physical interaction. As additional molecules in the meaning of the invention, other proteins or peptides are preferably used, which are covalently or non-covalently linked with the recognition molecule produced by means of the method according to the invention, e.g. in order to produce bispecific recognition molecules by linking a recognition molecule of the invention which specifically recognizes the MUC1 antigen with a second molecule which e.g. specifically binds an immunoeffector cell (for example, macrophage, NK cells, dendritic cells), or e.g. a linkage with interleukins (for example, IL-2, IL-7, IL-12, IL-15), chemokines or growth factors, and by virtue of the effect of these molecules via binding of the recognition molecule of the invention, immunoeffectors are directed to the core 1-positive tumor cells, combatting and/or destroying same, for example. As described above, said additional molecules or components thereof can also be part of the recognition molecule itself, in which case they would not be linked by means of the herein-described chemical or physical methods following expression of the recognition molecule. In the meaning of the invention, “immunoeffectors” are understood to be those components of the invention capable of directly or indirectly effecting control and/or destruction of MUC1-positive tumor cells, e.g. immunoeffector cells such as macrophages, NK cells, dendritic cells, or effector molecules such as proteins or peptides of the complement system. Suitable as additional molecules within the scope of the method according to the invention are, in particular, substances developing a therapeutic or diagnostic effect, e.g. radioisotopes or toxins. These substances are linked with the recognition molecules using per se known procedures; for example, radioisotopes are either directly incorporated (for example, iodine) or bound via a covalently coupled chelating agent (for example, yttrium, indium, bismuth). The steps of the procedure of further treatment are well-known to those skilled in the art.
The cells used according to the invention to express the recognition molecules can be prokaryotic or eukaryotic cells, e.g. bacterial, yeast (preferably S. cerevisiae or P. pastoris), insect (D. melanogaster), plant, mammal cells (preferably hamster, mouse or human cell lines) or organisms such as transgenic animals and plants. Preferably, E. coli is used for expression of the recognition molecules of the invention in a prokaryotic system, and the mammal cell lines NS0, SP2/0, CHO-K, CHOdhfr-, COS-1, COS-7, HEK293, K562, Namalwa or Percy 6 for expression in a eukaryotic system.
Furthermore, the present invention relates to host cells produced using the method described above, by means of which host cells recognition molecules of the invention can be produced. Of course, the host cells can be part of a clone or represent the clone themselves. The invention also relates to organisms comprising the host cells of the invention. Techniques to be used and methods of producing such organisms are well-known to those skilled in the art.
The invention also relates to compositions for therapeutic, prophylactic or diagnostic purposes, comprising at least one recognition molecule of the invention in a suitable, especially pharmaceutically suitable form or composition. More specifically, the pharmaceutical composition comprises additional materials and substances, e.g. medical and/or pharmaceutical-technical adjuvants. In the meaning of the invention, pharmaceutical compositions used for therapeutic and prophylactic purposes, as well as pharmaceutical compositions used as in vivo diagnostic agent will be regarded as drugs. In another preferred embodiment, compositions for ex vivo diagnostics are concerned, which may contain additional materials and substances. This embodiment will be illustrated in more detail in the description of diagnostic agents.
According to the invention, “drugs or pharmaceutical compositions”—used in a synonymous fashion herein—are substances and formulations of substances intended to cure, alleviate or avoid diseases, illness, physical defects or pathological affection by application on or in the human body. According to the invention, medical adjuvants are substances used as active ingredients in the production of drugs. Pharmaceutical-technical adjuvants serve to suitably formulate the drug or pharmaceutical composition and, if required during the production process only, can even be removed thereafter, or they can be part of the pharmaceutical composition as pharmaceutically tolerable carriers. Examples of pharmaceutically tolerable carriers will be given below. Drug formulation or formulation of the pharmaceutical composition is optionally effected in combination with a pharmaceutically tolerable carrier and/or diluent. Examples of suitable pharmaceutically tolerable carriers are well-known to those skilled in the art and comprise e.g. phosphate-buffered saline, water, emulsions such as oil/water emulsions, various types of detergents, sterile solutions, and so forth. Drugs or pharmaceutical compositions comprising such carriers can be formulated by means of well-known conventional methods. These drugs or pharmaceutical compositions can be administered to an individual at a suitable dose, e.g. in a range of from 1 μm to 10 g of recognition molecules per day and patient. Doses of from 1 mg to 1 g are preferred. Preferred is administration of doses as small in number and as low as possible, preferably a single dose e.g. of a radiolabelled recognition molecule. Administration can be effected on various routes, e.g. intravenous, intraperitoneal, intrarectal, intragastrointestinal, intranodal, intramuscular, local, e.g. intratumoral, but also subcutaneous, intradermal or on the skin or via mucosa. Administration of nucleic acids can also be effected in the form of a gene therapy, e.g. by means of viral vectors described above. The kind of dosage and route of administration can be determined by the attending physician according to clinical factors. As is familiar to those skilled in the art, the kind of dosage will depend on various factors, such as size, body surface, age, sex, or general health condition of the patient, but also on the particular agent being administered, the time period and type of administration, and on other medications possibly administered in parallel.
A “vaccine composition” is a pharmaceutical composition for the prophylactic or therapeutic active immunization of patients, so as to provoke a specific immune response against the glycosylated MUC1 tumor epitope in the patient via the immunologic network.
More specifically, the pharmaceutical compositions or drugs comprise a pharmacological substance which includes one or more recognition molecules of the invention or/and nucleic acid molecules encoding same, in a suitable solution or administration form. Administration thereof can be effected either alone or together with appropriate adjuvants described in connection with drugs or pharmaceutical compositions, or in combination with one or more adjuvants, e.g. QS-21, GPI-0100 or other saponines, water-oil emulsions such as Montanide adjuvants, polylysine, polyarginine compounds, DNA compounds such as CpG, Detox, bacterial vaccines such as typhoid vaccines or BCG vaccines, salts such as calcium phosphates, and/or other suitable materials enhancing the effect, preferably immunostimulatory molecules such as interleukins, e.g. IL-2, IL-12, IL-4 and/or growth factors such as GM-CSF. They are mixed with the recognition molecules of the invention according to well-known methods and administered in suitable formulations and dosages. Formulations, dosages and suitable components are well-known to those skilled in the art.
Obviously, the pharmaceutical composition or drug can also be a combination of two or more of the inventive pharmaceutical compositions or drugs, as well as a combination with other drugs, tumor vaccines or tumor treatments, such as antibody therapies, chemotherapies or radiotherapies, suitably administered or applied at the same time or separately in time. The production of the drugs or pharmaceutical compositions proceeds according to per se known methods.
The drugs or pharmaceutical compositions are used in the prophylaxis or treatment of tumor diseases and/or metastases, especially in the treatment of MUC1-positive tumor diseases and metastases, such as mammary carcinomas, gastrointestinal tumors, including colon carcinomas, stomach carcinomas, large intestine cancer and small intestine cancer, pancreas carcinomas, ovarian carcinomas, liver carcinomas, lung cancer, renal cell carcinomas, multiple myeloma. For example, the treatment is directed against primary tumors, minimal residual tumor diseases, relapses and/or metastases. The treatment of the tumors can also be effected as an adjuvant treatment. The drugs can also be used in the prophylaxis of MUC1-positive tumor diseases. For example, prophylactic use is directed to the prophylaxis of tumors and metastases. The tumor agents are administered in a suitable form according to well-known methods. A preferred variant is injection or administration of the drugs intravenously, locally in body cavities, e.g. intraperitoneal, intrarectal, intragastrointestinal routes, locally, e.g. directly in a tumor, in organs or lymphatic vessels (intranodal), but also subcutaneously, intradermally or on the skin, and intramuscularly. In a preferred fashion, types of administration can also be combined, in which case administration can be effected on different days of treatment or on one day of treatment. According to the invention, it is also possible to combine two or more of the inventive drugs or pharmaceutical compositions or one or more drugs of the invention with one or more drugs or tumor treatments, such as antibody therapies, chemotherapies or radiotherapies, suitably administered or applied at the same time or separately in time. Suitable formulations, dosages and combinations of components are well-known to those skilled in the art or can be determined according to well-known methods.
The present invention also relates to a method for the production of a drug or a pharmaceutical composition, comprising the steps of producing recognition molecules and further comprising the step of formulating the recognition molecules of the invention into a pharmaceutically tolerable form. The inventive recognition molecules preferred to this end are described above as embodiments of the treatment of tumor diseases and prophylaxis, as well as under in vivo diagnostic agents below.
Hence, the recognition molecules of the invention and the substances and compositions produced using the method according to the invention can preferably be used in prophylaxis, diagnosis, follow-up and/or treatment of tumor diseases. Furthermore, it is preferred to use the recognition molecules, vectors and/or the drug or pharmaceutical composition in the prophylaxis and/or treatment of cancer diseases, including tumors and metastases.
In a preferred embodiment the cancerous disease or tumor being treated or prophylactically prevented, or whose reappearance is prevented, is selected from the group of cancerous diseases or tumor diseases of the ear-nose-throat region, of the lungs, mediastinum, gastrointestinal tract, urogenital system, gynecological system, breast, endocrine system, skin, bone and soft-tissue sarcomas, mesotheliomas, melanomas, neoplasms of the central nervous system, cancerous diseases or tumor diseases during infancy, lymphomas, leukemias, paraneoplastic syndromes, metastases with unknown primary tumor (CUP syndrome), peritoneal carcinomatases, immunosuppression-related malignancies and/or tumor metastases.
More specifically, the tumors may comprise the following types of cancer: adenocarcinoma of breast, prostate and colon; all forms of lung cancer starting in the bronchial tube; bone marrow cancer, melanoma, hepatoma, neuroblastoma; papilloma; apudoma, choristoma, branchioma; malignant carcinoid syndrome; carcinoid heart disease, carcinoma (for example, Walker carcinoma, basal cell carcinoma, squamobasal carcinoma, Brown-Pearce carcinoma, ductal carcinoma, Ehrlich tumor, in situ carcinoma, cancer-2 carcinoma, Merkel cell carcinoma, mucous cancer, non-parvicellular bronchial carcinoma, oat-cell carcinoma, papillary carcinoma, scirrhus carcinoma, bronchio-alveolar carcinoma, bronchial carcinoma, squamous cell carcinoma and transitional cell carcinoma); histiocytic functional disorder; leukemia (e.g. in connection with B cell leukemia, mixed-cell leukemia, null cell leukemia, T cell leukemia, chronic T cell leukemia, HTLV-II-associated leukemia, acute lymphocytic leukemia, chronic lymphocytic leukemia, mast cell leukemia, and myeloid leukemia); malignant histiocytosis, Hodgkin disease, non-Hodgkin lymphoma, solitary plasma cell tumor; reticuloendotheliosis, chondroblastoma; chondroma, chondrosarcoma; fibroma; fibrosarcoma; giant cell tumors; histiocytoma; lipoma; liposarcoma; leukosarcoma; mesothelioma; myxoma; myxosarcoma; osteoma; osteosarcoma; Ewing sarcoma; synovioma; adenofibroma; adenolymphoma; carcinosarcoma, chordoma, craniopharyngioma, dysgerminoma, hamartoma; mesenchymoma; mesonephroma, myosarcoma, ameloblastoma, cementoma; odontoma; teratoma; thymoma, chorioblastoma; adenocarcinoma, adenoma; cholangioma; cholesteatoma; cylindroma; cystadenocarcinoma, cystadenoma; granulosa cell tumor; gynadroblastoma; hidradenoma; islet-cell tumor; Ley-dig cell tumor; papilloma; Sertoli cell tumor, theca cell tumor, leiomyoma; leiomyosarcoma; myoblastoma; myoma; myosarcoma; rhabdomyoma; rhabdomyosarcoma; ependymoma; ganglioneuroma, glioma; medulloblastoma, meningioma; neurilemmoma; neuroblastoma; neuroepithelioma, neurofibroma, neuroma, paraganglioma, non-chromaffin paraganglioma, angiokeratoma, angiolymphoid hyperplasia with eosinophilia; sclerotizing angioma; angiomatosis; glomangioma; hemangioendothelioma; hemangioma; hemangiopericytoma, hemangiosarcoma; lymphangioma, lymphangiomyoma, lymphangiosarcoma; pinealoma; cystosarcoma phylloides; hemangiosarcoma; lymphangiosarcoma; myxosarcoma, ovarian carcinoma; sarcoma (for example, Ewing sarcoma, experimentally, Kaposi sarcoma and mast cell sarcoma); neoplasms (for example, bone neoplasms, breast neoplasms, neoplasms of the digestive system, colorectal neoplasms, liver neoplasms, pancreas neoplasms, hypophysis neoplasms, testicle neoplasms, orbital neoplasms, neoplasms of the head and neck, of the central nervous system, neoplasms of the hearing organ, pelvis, respiratory tract and urogenital tract); neurofibromatosis and cervical squamous cell dysplasia.
In another preferred embodiment the cancerous disease or tumor being treated or prophylactically prevented, or whose reappearance is prevented, is selected from the group of cancerous diseases or tumor diseases comprising cells including the MUC1 in the definition according to the invention, selected from the group of: tumors of the ear-nose-throat region, comprising tumors of the inner nose, nasal sinus, nasopharynx, lips, oral cavity, oropharynx, larynx, hypopharynx, ear, salivary glands, and paragangliomas, tumors of the lungs, comprising non-parvicellular bronchial carcinomas, parvicellular bronchial carcinomas, tumors of the mediastinum, tumors of the gastrointestinal tract, comprising tumors of the esophagus, stomach, pancreas, liver, gallbladder and biliary tract, small intestine, colon and rectal carcinomas and anal carcinomas, urogenital tumors comprising tumors of the kidneys, ureter, bladder, prostate gland, urethra, penis and testicles, gynecological tumors comprising tumors of the cervix, vagina, vulva, uterine cancer, malignant trophoblast disease, ovarian carcinoma, tumors of the uterine tube (Tuba Faloppii), tumors of the abdominal cavity, mammary carcinomas, tumors of the endocrine organs, comprising tumors of the thyroid, parathyroid, adrenal cortex, endocrine pancreas tumors, carcinoid tumors and carcinoid syndrome, multiple endocrine neoplasias, bone and soft-tissue sarcomas, mesotheliomas, skin tumors, melanomas comprising cutaneous and intraocular melanomas, tumors of the central nervous system, tumors during infancy, comprising retinoblastoma, Wilms tumor, neurofibromatosis, neuroblastoma, Ewing sarcoma tumor family, rhabdomyosarcoma, lymphomas comprising non-Hodgkin lymphomas, cutaneous T cell lymphomas, primary lymphomas of the central nervous system, Hodgkin's disease, leukemias comprising acute leukemias, chronic myeloid and lymphatic leukemias, plasma cell neoplasms, myelodysplasia syndromes, paraneoplastic syndromes, metastases with unknown primary tumor (CUP syndrome), peritoneal carcinomatosis, immunosuppression-related malignancy comprising AIDS-related malignancies such as Kaposi sarcoma, AIDS-associated lymphomas, AIDS-associated lymphomas of the central nervous system, AIDS-associated Hodgkin disease, and AIDS-associated anogenital tumors, transplantation-related malignancy, metastasized tumors comprising brain metastases, lung metastases, liver metastases, bone metastases, pleural and pericardial metastases, and malignant ascites.
In another preferred embodiment the cancerous disease or tumor being treated or prophylactically prevented, or whose reappearance is prevented, is selected from the group comprising cancerous diseases or tumor diseases such as mammary carcinomas, gastrointestinal tumors, including colon carcinomas, stomach carcinomas, large intestine cancer and small intestine cancer, pancreas carcinomas, ovarian carcinomas, liver carcinomas, lung cancer, renal cell carcinomas, multiple myelomas.
In another preferred embodiment the recognition molecules according to the invention are used in the prophylaxis of mammary or ovarian carcinomas in females having an increased risk of breast cancer.
In another preferred embodiment the cancerous disease or tumor or metastasization being treated or prophylactically prevented, or whose reappearance is prevented, is specifically selected from the group of gastrointestinal tumors and preferably colon carcinomas, stomach carcinomas and rectal carcinomas.
The recognition molecules of the invention can be directly employed in the treatment or prophylaxis of tumor diseases or coupled with additional effector structures. According to the invention, “effector structures” are understood to be chemical or biochemical compounds, molecules or atoms which directly or indirectly cause destruction or damage, including e.g. growth reduction or growth inhibition, of tumor cells. For example, these include radioisotopes, toxins, cytostatic agents and other effector molecules such as cytokines and chemokines or other structures representing effectors themselves or being coupled to said effector molecules, e.g. liposomes loaded with toxins or cytostatic agents, which bear the recognition molecules according to the invention. In the latter example of liposomes, particularly those effector structures are concerned which, in addition to the recognition molecule for tumor specificity, bear molecules responsible for reception of effector structures or components thereof in cells, such as antibodies against receptors causing receptor-mediated endocytosis. In such cases, the recognition molecules preferably comprise a transmembrane domain allowing their insertion in the liposomal membrane, or, in another preferred embodiment the recognition molecules are chemically coupled on the liposome surface. The techniques used to this end are well-known to those skilled in the art, including production of the liposomes. Linking of the recognition molecules with other effector structures also proceeds according to per se known methods. As already set forth above, linking can be effected e.g. directly by covalent or non-covalent loading, by chemical coupling, which may require an additional chemical or biological molecule, e.g. a chelating agent or linker, or in the form of fusion proteins or peptides via fusion. The recognition molecules are employed in the treatment of tumor diseases with MUC1-bearing tumors or in prophylaxis which, for example, prevents formation of primary tumors or metastases. One preferred objective is treatment of minimal residual disease and of metastases. The recognition molecules according to the invention are administered in a suitable formulation, in one go or repeatedly, at suitable intervals and with suitable doses.
In a preferred embodiment the above-described radioactive recognition molecules according to the invention are combined with an application of non-labelled MUC1-specific recognition molecules according to the invention. This helps towards an improvement of the background and more specific binding to the tumor by saturating small amounts of MUC1-bearing molecules in the blood. To this end, IgG molecules and more preferably IgM-derived recognition molecules are preferably used, e.g. a cIgMG or a humanized form thereof, because they primarily bind to MUC1 antigen in blood, thereby reducing the background and serum radioactivity load and increasing the relative tumor targeting, while limiting penetration into tissues and tumors by virtue of the size of the molecules. The procedures and technologies used to this end are well-known to those skilled in the art, and a person skilled in the art will also be able to devise a suitable dose, formulations, route of application, and time of administering said non-labelled recognition molecules.
Also preferred is the use of viral vectors in gene-therapeutic applications wherein specifically the surface of the viruses bears recognition molecules according to the invention.
The present invention also relates to methods of producing a diagnostic agent, comprising the steps of the inventive method for the production of MUC1-specific recognition molecules according to the invention and, in addition, comprising the step of formulating the recognition molecules in a diagnostically usable form.
According to the invention, the term “diagnostic agent” defines substances and preparations of substances intended to recognize diseases, illness, physical defects or pathological affection by application on or in the human body. Preferably, parts of the human body are understood to be body fluids such as blood, blood serum, lymph, urine, spinal fluid, or sperm, or tissue biopsies or samples.
Formulating the diagnostic agent preferably comprises modification of the produced recognition molecules with substances allowing detection of the MUC1 antigen. Suitable substances are well-known in the art. Based on the selection of a substance, a person skilled in the art will be able to take suitable measures in order to formulate a diagnostic agent.
According to the invention, it is also possible for diagnostic purposes to couple substances to the recognition molecules according to per se known methods, which facilitate detection of MUC1 antigens and/or carrier cells thereof, e.g. by biotinylation, fluorescence labelling, radioactive labelling or enzyme linking of recognition molecules.
Another method of tumor diagnostics and prognosis uses recognition molecules of the invention which recognize MUC1 antigens in the serum of humans. Also, against the background of the recognition molecules' property of binding much less MUC1 in serum compared to the well-known antibodies HMFG-1 and DF-3 (CA15-3 test), this is possible and advantageous because the recognition molecules according to the invention are capable of distinguishing clearly between normal serum and tumor serum, even in those cases where binding in serum of colon carcinoma patients is low. Determination is preferably qualitative, quantitative and/or in time-dependent relative quantities according to per se known methods. According to the invention, the same methods are also used in the follow-up of tumor diseases and to control the course of treatment, including monitoring of immune responses, and for control and dosage of tumor treatments. The techniques used in such methods are per se well-known, e.g. ELISA, Western blot, FACS (fluorescence-activated cell sorting), MACS (magnetic-activated cell sorting), ADCC (antibody-dependent cell cytotoxicity), CDC (complement-dependent cytotoxicity), immunocytochemistry and immunohistochemistry.
The preferred inventive methods of tumor diagnostics and prognosis use MUC1-specific recognition molecules of the invention in per se well-known methods to detect the glycosylated MUC1 tumor epitope antigen in serum or in tissue preparations. In these methods, MUC1 antigen, MUC1 present in immune complexes and/or MUC1 bound on cells is detected, and the presence of the MUC1 antigen is determined qualitatively, quantitatively and/or in relative quantities according to per se known methods. According to the invention, the same methods are employed in the follow-up of tumor diseases and to control the course of treatments. The techniques used in such methods are per se well-known, e.g. ELISA, Western blot, FACS (fluorescence-activated cell sorting), MACS (magnetic-activated cell sorting), ADCC (antibody-dependent cell cytotoxicity), CDC (complement-dependent cytotoxicity), immunocytochemistry and immunohistochemistry.
One preferred embodiment is a tissue rapid test wherein the tissue samples are stained with fluorescence-labelled recognition molecules of the invention in a immunohistological method. In another preferred method the recognition molecule according to the invention, preferably an isotype IgG antibody, is combined with another antibody specifically recognizing the core 1 antigen, preferably isotype IgM. The advantage is that, e.g. in gastrointestinal carcinoma diagnostics (e.g. colorectal carcinomas and stomach carcinomas), recognition at an early stage and, at the same time, prognosis with respect to the course of disease and/or risk of liver metastasization is possible, higher levels of core 1 and MUC1 antigen indicating a more unfavorable prognosis as to the course, and higher levels of core 1 indicating a probability of liver metastasization increased by several times. In another preferred embodiment the antibodies and recognition molecules are directly labelled with various fluorescent dyes, e.g. Cy3 and Cy5 or Cy3 and FITC. In one embodiment, wherein signal intensification is advantageous, the antibodies and/or recognition molecules are enhanced by labelled secondary antibodies or biotin-streptavidin. Advantageously, different isotypes and/or sequences of species in the constant region of antibodies are used. The techniques and methods used to this end, e.g. of labelling and immunohistology, as well as the selection of suitable formats of recognition molecules are well-known to those skilled in the art. The diagnostic method described above is not restricted to gastrointestinal tumors, but can be used in any tumor disease involving the MUC1 antigen.
For a serological tumor test, another preferred embodiment of the invention combines the determination of MUC1, as described above, with the determination of other serological tumor markers, e.g. PSA, CEA or AFP. One embodiment preferred in this case is determination of MUC1 and core 1 antigen. In a preferred embodiment, MUC1 is immobilized from the serum on a solid phase, using an MUC1-specific antibody, and detected with a recognition molecule of the invention as detection antibody, which specifically binds the glycosylated MUC1 tumor epitope, and the core 1 antigen is detected on MUC1 immobilized by means of an anti-MUC1 scavenger antibody, such as the MUC1-specific recognition molecules of the invention, using a specific anti-core 1 antibody. This diagnostic test combines early recognition with a prognostic statement as to the course of disease and/or the probability of liver metastasization. The techniques used to this end, e.g. labelling and serology, including the detection methods, are well-known to those skilled in the art. The diagnostic methods described above are not restricted to gastrointestinal tumors, but can be used in any tumor bearing the MUC1 antigen. The serological tests described above are used in diagnosis, monitoring the course of a tumor disease, and in the prognosis of MUC1-positive tumors.
In another method according to the invention, the MUC1-specific recognition molecules of the invention are used in in vivo diagnostics. To this end, the recognition molecules are labelled using suitable, per se known methods and thus made available for per se known imaging methods in humans, e.g. radioimmunodiagnostics, PET scanning methods or immunofluorescence endoscopy, e.g. by coupling and/or loading with appropriate molecules, e.g. radioactive isotopes such as indium, or fluorescent dyes such as Cy3, Cy2, Cy5 or FITC. In a preferred embodiment, multibodies according to the invention are covalently coupled with a suitable chelating agent (for example, DOTA or DTPA) and, loaded with indium-111, used in in vivo diagnostics. In a preferred embodiment, they are administered intravenously at a dose appropriate to the individual, and the location of the MUC1 antigen and of a potential tumor is measured according to per se known methods. The methods and technologies used to this end, including imaging methods, are well-known to those skilled in the art, and a person skilled in the art will also be able to devise a suitable dose and formulations.
In another preferred embodiment, immunoglobulins, preferably IgG, are radiolabelled as described above and illustrated in more detail in the examples, e.g. with indium-111, and administered locally into the tumor or blood vessels supplying or evacuating the tumor. In one embodiment, this is used to determine the size of the tumor, and in another embodiment, to determine affected lymphatic nodes. The methods and technologies used to this end are well-known to those skilled in the art, and a person skilled in the art will also be able to devise a suitable dose and formulations.
In another embodiment the radioactively labelled recognition molecules of the invention are also administered via other routes of application. Preferred routes are intraperitoneal, intranodal or intrarectal and intragastrointestinal, respectively. Intraperitoneal is particularly advantageous in the determination of tumors accessible through the peritoneum and/or metastasizing therein, e.g. ovarian carcinomas and certain gastrointestinal carcinomas. Intrarectal or intragastrointestinal administration is advantageous in some gastrointestinal tumors and in localization and size determination thereof. In some cases, intranodal can be used for direct infiltration of single lymphatic nodes.
In a preferred embodiment the above-described radioactive recognition molecules of the invention are combined with an application of non-labelled MUC1-specific recognition molecules of the invention for in vivo diagnostic agents. This is to improve the background. The methods and technologies used to this end are well-known to those skilled in the art, and a person skilled in the art will also be able to devise a suitable dose, formulations, route of application, and time of administering said non-labelled recognition molecules.
In another preferred embodiment, recognition molecules of the invention, preferably immunoglobulins, multibodies or antibody fragments, more preferably IgG, Fab and multibodies, are labelled with a fluorescent dye and administered in vivo. Preferred routes of application are intrarectal, intragastrointestinal, intraperitoneal, intravenous and into supplying or evacuating blood vessels. A particularly preferred embodiment is used to localize gastrointestinal carcinomas by means of fluorescence endoscopy following application of fluorescence-labelled recognition molecules. In another preferred embodiment a recognition molecule of the invention is combined with at least one antibody to another tumor antigen, preferably anti-core 1 antibody. In a preferred fashion, different fluorescent dyes are used, allowing differentiation of the recognition molecules and antibodies, thereby combining a prognostic statement with early recognition and a greater number of cases. Preferred fluorescent dyes are those having lower background fluorescence, which are well-known to those skilled in the art. The methods and technologies used to this end, including imaging methods, e.g. fluorescence endoscopy, are well-known to those skilled in the art, and a person skilled in the art will also be able to devise a suitable dose, formulations, route of application, and time of administering said non-labelled recognition molecules.
The invention has several advantages: The MUC1-specific recognition molecules of the invention recognize the types of carcinomas in a specific fashion, which is why they can be used with advantage in diagnosis and/or therapy of a large number of tumor patients with different indication. Moreover, the recognition molecules advantageously bind to a very low extent in areas in normal tissue inaccessible in vivo. Compared to well-known tumor markers, this is a particular advantage and an outstanding property of the recognition molecules according to the invention. One particular advantage of the recognition molecules of the invention is their high specificity for tumor tissue. In particular, this is due to the high specificity for a defined glycosylated MUC1 tumor epitope. The polymorphic epithelial mucin MUC1, in the form of the overall molecule, is a well-established tumor marker. As a result of the complexity of the molecule, which is very large, highly glycosylated, essentially consists of a large number of polymorphic tandem repeats of 20 amino acid residues in the extracellular state, and has heterogeneous glycosylation with respect to the tandem repeats, MUC1 has a variety of epitopes. The recognition molecules of the invention binding the glycosylated MUC1 tumor epitope specifically in the meaning of the invention detect a defined epitope in MUC1, resulting in high specificity of the recognition molecules for tumor tissue. Furthermore, one particular advantage is that the recognition molecules of the invention have low levels of recognition of such MUC1 released into the serum by tumor cells (shedding). Such reduced binding to MUC1 present in the serum in a tumor patient is a great advantage in the therapy of tumor diseases using the recognition molecules according to the invention. Furthermore, the recognition molecules of the invention exhibit high affinity. In particular, this presents a way of constructing lower-valent fragments such as scFv and multibodies. The option of having these different formats available is advantageous in the development of therapeutic agents.
Without intending to be limiting, the invention will be explained in more detail with reference to the examples.
EXAMPLES
1. Preparation of scFv with Varying Linker Lengths, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope
MUC1-specific scFv with the sequences SEQ ID Nos. 36 to 59 were produced by PCR amplification and subsequent cloning of the variable chains into a bacterial expression vector. This vector includes the lacZ promoter, a ribosome binding site (RBS), the M13 origin, the pelB signal sequence for secretion into the periplasm, an ampicillin resistance gene, and a cloning cassette to couple a hexahistidine tag for efficient purification and a c-myc-tag to the C-terminal end of the scFv (FIG. 1). For varying linker lengths, VH and VL were amplified with specific primers in such a way that 22 nucleotides at the 3′ end of VH and at the 5′ end of VL formed a complementary region (FIG. 2, PCR I and PCR II), Subsequently, following purification, the two PCR fragments were linked in an SOE-PCR (FIG. 2, PCR III), and the PCR fragment was cloned into the above-described vector via NcoI/NotI.
2. Bacterial Expression and Purification of scFv Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
The antibody fragments from Example 1 were expressed in Escherichia coli and purified. To this end, the corresponding plasmid was transformed in electrocompetent E. coli by means of electroporation and cultured in 2×TY medium (10 g of yeast extract, 16 g of tryptone, 5 g of NaC1 per liter) with 100 μg/ml ampicillin overnight. This culture was diluted 1:100 with 2×TY medium added with 100 μg/ml ampicillin and 0.5% glucose and incubated at 37° C. until an OD600 nm of about 0.6 was reached. Thereafter, the culture was added with 1 mM IPTG for induction and incubated at 25° C. for another 5 hours. The bacteria were harvested by centrifugation at 4000×g for 20 min, the cell pellet was resuspended in TES buffer (30 mM Tris-HCl, pH 8.0, 20% saccharose, 1 mM EDTA) and incubated on ice for 20 min. Subsequently, 5 mM MgSO4 was added, and the suspension was incubated on ice for another 20 min. The periplasm fraction was obtained by centrifugation at 4000×g for 60 min and dialyzed against binding buffer (50 mM phosphate buffer, pH 8.0, 300 mM NaCl, 10 mM imidazole) at 4° C. overnight. The antibody fragments contained in the periplasm fraction were purified by metal ion affinity chromatography (HiTrap Chelating HP, Amersham Pharmacia Biotech) using the C-terminal His-tag. To this end, the dialyzed fraction was loaded on a column previously equilibrated with binding buffer, and the non-binding proteins were washed from the column with washing buffer (50 mM phosphate buffer, pH 8.0, 300 mM NaCl, 30 mM imidazole). Subsequently, the antibody fragments were eluted with elution buffer (50 mM phosphate buffer, pH 8.0, 300 mM NaCl, 300 mM imidazole).
3. Cloning of Vectors to Express Chimeric IgG and IgM Antibodies Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
The NcoI/XhoI DNA fragment from the scFv vector, which encodes VH (FIG. 1), was cloned into the NcoI/SalI-cut BS Leader vector (FIG. 3). The BS Leader vector includes a cloning cassette to introduce the T cell receptor signal peptide sequence at the 5′ end and a splice donor sequence at the 3′ end of the sequences of the variable domains (FIG. 3). The VL sequence of the corresponding antibody was amplified with specific primers to introduce the NcoI restriction site at the 5′ end and the NheI restriction site at the 3′ end in the PCR using the scFv sequence as template and, following NcoI/NheI digestion, cloned into the likewise digested BS Leader vector. Thereafter, each HindIII/BamHI fragment from the BS Leader vector was cloned into the corresponding eukaryotic expression vector. These vectors (pEFpuroCγlVH, pEFpuroCμVH and pEFneoCκVL) include EF-1α-promoter and HCMV enhancer, SV40 origin, BGH polyadenylation signal, puromycin resistance gene in the vector for the heavy chain and neomycin resistance gene in the vector for the light chain, as well as the genomic sequences of the human constant γl region or μ region for the heavy chain or of the human constant κ region for the light chain (primers for amplification from genomic human DNA and vector map see FIG. 3).
4. Eukaryotic Expression of Chimeric IgG and IgM Antibodies, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope, in CHO Cells and Purification Thereof
To express the chimeric antibodies cIgG-Panko1 consisting of the sequences SEQ ID Nos. 64 and 68, cIgG-Panko2 consisting of the sequences SEQ ID Nos. 65 and 69, cIgM-Panko1 consisting of the sequences SEQ ID Nos. 66 and 68, and cIgM-Panko2 consisting of the sequences SEQ ID NO. 67 and 69, CHOdhfr-cells (ATCC No. CRL-9096) were co-transfected with a mixture of vectors for the heavy and light chains (1:3) by means of electroporation (106 cells/ml, 500 V, 50 μs) and cultured in selection medium (CHO-S-SFM II medium (Life Technologies), HT supplement (Biochrom), 400 μg/ml G418, 5 μg/ml puromycin) for 2 weeks. Following single-cell cloning in a 96-well plate, the supernatants were tested in an ELISA (glycosylated MUC1 peptide (30mer, see below) as antigen, anti-human Fcγl-POD-coupled or antihuman Fc5μ-POD-coupled (Dianova) as secondary antibody), and the clone with the highest antibody production rate was selected (about 0.5 μg/106 cells/24 h).
For antibody production, the stably transfected CHO cells secreting the chimeric IgG and IgM, respectively, were cultured in spinner flasks or in flask culture in CHO-S-SFM II medium, supplemented with HT supplement, until a cell density of about 1×106 cells/ml was reached. Following removal of the cells from the cell culture supernatant by centrifugation (400×g, 15 min), the chimeric antibody was purified using a protein A column (HiTrap r-protein A FF, Amersham Pharmacia Biotech) for chimeric IgG or an antihuman Fc5μ antibody affinity column for chimeric IgM. The purified antibody fraction eluted by sudden pH change was re-buffered in PBS and concentrated using Centriprep centrifuge tubes (cut-off 50 kDa, Millipore).
5. Analysis of scFv and Antibodies, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope, in an ELISA
Various synthetic peptides and glycopeptides were used as antigens: a non-glycosylated 30mer with the sequence APPAHGVTSAPDTRPAPGSTAPPAHGVTSA (SEQ ID NO: 70); a glycosylated 30mer with the sequence APPAHGVTSAPDT[GalNAcα]R PAPGSTAPPAHGVTSA (SEQ ID NO: 71), a series of non-glycosylated MUC1 peptides of varying length with the sequence [VTSAPDTRPAPGSTAPPAHG]n wherein n=1 (SEQ ID NO: 72), 3 (SEQ ID NO: 73) and 5 (SEQ ID NO: 74) (TR1, TR3 and TR5), and a series of glycosylated MUC1 peptides of varying length with the sequence A[HGVTSAPDT(GalNAcα)RPAPGSTAPPA]n wherein n=1 (SEQ ID NO: 75), 3 (SEQ ID NO: 76) and 5 (SEQ ID NO: 77) (TR1g, TR3g and TR5g).
Using the respective stock solutions (1 mg in 1 ml of bidist. H2O) stored in portions at −20° C., a dilution of 10 μg/ml in PBS or 10 μg/ml in bidist. H2O was produced. 50 μl/well of the above was pipetted in a microtiter plate, and the test plate was incubated overnight (using NUNC—Immuno plate F96 MAXISORP and incubation at 4° C. for peptides in PBS; using Nunclon TC plates and slight drying of the peptides at 37° C. for peptides in bidist. H2O). On the next day, the test plate was washed 3 times with PBS/0.2% Tween. Subsequently, non-specific binding sites were blocked with 2% BSA in PBS, and 50 μl of the first antibody was applied (murine antibodies: 10-10000 ng/ml PBS/1% BSA; chimeric IgG: 1-100 ng/ml in PBS/1% BSA; scFv: 50-500 ng/ml in PBS/1% BSA). After three wash steps with PBS/0.2% Tween, the corresponding peroxidase-coupled secondary antibodies were employed to detect the specifically bound antibody constructs (an anti-mouse or anti-human Fcγl for the complete antibody, an anti-His-tag antibody for scFv). To detect the bound secondary antibody, a color reaction with TMB (3,3′,5,5′-tetramethylbenzidine) was performed. After 15 minutes the reaction was quenched by adding 2.5 N H2SO4. Measurement was performed using a microtiter plate photometer with 450 nm filter in dual mode versus 630 nm reference filter. Representative results are illustrated in FIGS. 4 to 8.
5.1. Binding to the Glycosylated PDTRP Region within an MUC1 Tandem Repeat Sequence
FIG. 4 shows preferred binding of the recognition molecules of the invention to the glycosylated MUC1 peptide. Two recognition molecules with varying loop sequences in IgG format are compared. The antibody constructs mIgG-Panko1 (SEQ ID NO. 60 and SEQ ID NO. 62) and mIgG-Panko2 (SEQ ID NO. 61 and SEQ ID NO. 63) bind to the 30mer in a highly specific fashion, preferably to the glycosylated peptide, and only slightly, or not at all, to the nonglycosylated peptide sequence. In comparison to mIgG-Panko1 and mIgG-Panko2, FIG. 5 illustrates binding of the MUC1-specific antibodies HMFG-1, C595 and SM3 to the nonglycosylated and to the glycosylated 30mer (representative example). The three antibodies HMFG-1, C595 and SM3 showed no or only slight glycosylation dependence with a factor (ratio of glycosylated/non-glycosylated peptide) of <1.2 for all three antibodies. The antibodies are used for differentiation and are not part of the recognition molecules according to the invention. In contrast, a factor of >4.5 (in FIG. 5: 5.1) results for mIgG-Panko1 and a factor of >20 (in FIG. 5: 22.1) for mIgG-Panko2 under the same conditions.
FIG. 6 illustrates different formats of the recognition molecules of the invention in their preferred specific binding to the glycosylated MUC1 peptide.
5.2. Binding to Multiple Non-Glycosylated MUC1 Tandem Repeats
As a representative example, FIG. 7 shows the binding dependence of the recognition molecules of the invention, mIgG-Panko1 and mIgG-Panko2, on the number of nonglycosylated tandem repeats compared to the MUC1-specific antibodies C595 and SM3. The ratio of the signal with TR5 peptide to that with TR1 peptide represents a factor reflecting the degree of binding dependence on the number of repeats. Factors of >3 (in FIG. 7: 3.9) and >8 (in FIG. 7: 12.7), result for mIgG-Panko1 and mIgG-Panko2, respectively, whereas the MUC1-specific antibodies C595 (factor 1.1) and SM3 (factor 2.1) show no or only slight dependence under the same conditions.
5.3. Binding to Multiple Glycosylated MUC1 Tandem Repeats
As a representative example, FIG. 8 shows the binding dependence of the inventive recognition molecule mIgG-Panko2 on the number of tandem repeats (multiple glycosylated PDTR regions) compared to the MUC1-specific antibodies C595 and SM3. The mIgG-Panko2 shows additional dependence on the number of glycosylated tandem repeats, whereas binding of the MUC1-specific antibodies C595 and SM3 is independent of any increase in the number of repeats.
6. Immunohistologic and Immunocytologic Staining with Recognition Molecules Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
For immunohistologic staining, frozen sections of appropriate tissue samples were air-dried and fixed with 10% formaldehyde in PBS for 15 min. To reduce the endogenic peroxidase activity, the sections were treated with 3% hydrogen peroxide in PBS and, following blocking of non-specific binding sites with rabbit serum, incubated with an MUC1-specific recognition molecule in the form of a primary antibody. Subsequently, the preparations were incubated with an appropriate secondary antibody (anti-mouse IgG, POD-coupled). The staining reaction was performed using the peroxidase substrate diaminobenzidine, and counter-staining with hematoxylin.
The exemplary recognition molecule mIgM-Panko2 according to the invention undergoes reaction with only a small number of structures in normal tissue. These are mainly found in immune-privileged regions of the body, e.g. on the apical surface of cells of certain glandular ducts and are therefore located in areas inaccessible or barely accessible to an antibody in vivo (Table 3). Moreover, staining in breast normal tissue is weak compared to tumor tissue and is found on the apical membrane only.







TABLE 3







Reaction of human normal tissue with the


MUC1-specific antibody mIgG-Panko2.












Type of tissue
Reactivity








epidermis





stratum basale
+/−




stratum spinosum
−




stratum granulosum
−




stratum corneum
−




non-epidermal cells
−




stomach





foveola epithelium
−




fundus glands
−




corpus glands
−




small intestine





mucosa
−




colon
−




mucosa
−




breast





glandular ducts
+




acini
+




myoepithelial cells
−




spleen





trabeculae lienis
−




reticular cells
−




lymphocytes
−




macrophages
−




endothelium





prostate
+




liver





hepatocytes
−




biliary ducts
+




kidneys





glomerules
−




capsular epithelium
−




tubuli proximalis
−




tubuli distalis
−/+




collecting tubule
−/+




lymphatic nodes





lymphocytes
−




macrophages
−




reticular cells
−




gall bladder





mucosa
+




brain





neurons
−




glial cells
−




meninges
−




ependymal cells
−




adrenal gland





adrenal cortex
−




adrenal medulla
−




thymus





epithelial reticular cells
−




Hassall's corpuscles
−/+




lymphocytes
−




macrophages
−




bladder





urothelium
+




heart





endocardium
−




myocardium
−




mesothelium
−




pancreas





glandular ducts
+




acini
+




islets of Langerhans
−




connective tissue
−




synovial tissue
−




muscle tissue





smooth muscle
−




skeletal muscle
−










The recognition molecules as claimed give positive reaction with a variety of tumors. The data in Table 4 show that MUC1-specific recognition molecules recognize a high percentage of tumor patients of a single indication, which differs from one indication to the other. In large intestine adenomas, staining correlates with the degree of dysplasia. Colon adenomas do not react with mIgG-Panko2 or only very slightly, whereas colon carcinomas are positive. Normal pancreas tissue is only slightly positive, whereas pancreas carcinomas show a very strong reaction with the recognition molecule mIgG-Panko2 according to the invention.







TABLE 4







Reaction of human tumor tissue with mIgG-Panko2.












Type of tissue
% positive cases
















colon





adenomas





tubular
25




tubular-villous
25




villous
33




transitory mucosa
30




carcinomas





adenocarcinoma
90




papillary adenocarcinoma
67




mucous adenocarcinoma
67




mucin-producing adenocarcinoma
100




signet-ring cell carcinoma
100




liver metastases
81




stomach carcinomas
90




liver carcinomas





well-differentiated
14




moderately differentiated
42




slightly differentiated
50




pancreas carcinomas
100




mammary carcinomas





primary carcinomas
87




metastases
91




renal cell carcinomas
100










Immunofluorescence was used for the immunocytologic stainings. To this end, appropriate cells were slightly dried on microscope slides and fixed with 5% formaldehyde for 10 min. Following blocking of non-specific binding sites with BSA (1% in PBS), the cells were incubated with the recognition molecules of the invention in the form of primary antibodies. This was followed by washing 3 times with PBS and incubation with the appropriate fluorescence-labelled secondary antibody (anti-mouse IgG-FITC or anti-human Fab-Cy2, Dianova). After repeated washing with PBS, the cells were embedded in Mowiol.
Various cell lines were tested with MUC1-specific recognition molecules in immunofluorescence. A number of tumor cell lines gave positive reaction (Table 5 and FIGS. 9 and 10).







TABLE 5







Reactivity of various cell lines with


the MUC1-specific antibody mIgG-Panko2.












Cell lines
Reactivity








ZR-75-1
positive




T47D
positive




U266
(positive)




LN78
positive




HT29
negative




HCT15
(positive)




HepG2
negative




K562
positive




MCF-7
positive




HEK293
(positive)










FIG. 9 exemplifies fluorescence labelling of T47D cells, a mammary carcinoma cell line, with mIgG-Panko2. FIG. 10 exemplifies fluorescence labelling of K562 cells with cIgG-Panko1.
Using immunohistology and immunofluorescence labelling, the neuraminidase dependence of the glycosylated MUC1 tumor epitope was investigated as well. To this end, sections or cells were pre-incubated with neuraminidase (0.02 U/ml PBS+0.01 M Ca2+) for one hour at room temperature, subsequently washed with PBS and then labelled as above. As illustrated in Tables 6 and 7, binding of the recognition molecules of the invention to the glycosylated MUC1 tumor epitope is neuraminidase-independent in the meaning of the invention or is enhanced by neuraminidase treatment.







TABLE 6







Immunohistologic staining of human tissue with mIgG-


Panko2 before and after neuraminidase treatment.










Reactivity
Reactivity after



untreated
neuraminidase treatment














normal colon tissue
−
−



colon adenomas
+
+



colon carcinomas
++
++



mammary carcinomas
++
+++
















TABLE 7







Immunofluorescence labelling of two tumor cell lines with


mIgG-Panko2 before and after neuraminidase treatment.












Reactivity
Reactivity after




untreated
neuraminidase treatment

















K562
+
++




ZR-75-1
+++
++++










7. Chelating and Radioactive Labelling of Antibodies and Antibody Fragments Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
Using conjugation, a chelating agent allowing binding of a radioactive metal was covalently bound to the antibodies mIgG-Panko2 and cIgG-Panko1 or to the scFv formats with the sequences SEQ ID Nos. 36 and 45. Commercial products from Macrocyclics (Dallas, USA), p-isothiocyanatobenzyl-diethylenetriaminepentaacetic acid (p-SCN-Bz-DTPA) and p-isothiocyanatobenzyl-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (p-SCN-Bz-DOTA) were employed as chelating agents. Both chelating agents are suitable for linking to antibodies for radiolabelling thereof [Brechbiel et al., 1986; Kozak et al., 1989; Stimmel et al., 1995].
Conjugation proceeds via reaction of the isothiocyanate group in the chelating agent with a free ε-amino group of the amino acid lysine on the antibody, thus forming a covalent N—C bond between chelating agent and antibody.
Initially, the purified antibody or the purified antibody fragment must be re-buffered in coupling buffer, pH 8.7. To this end, ultrafiltration in a filtration cartridge (CENTRIPREP YM-50 or YM-10; Millipore) was performed. This was done by repeated dilution with a 10-fold volume and filtration through a membrane of defined pore size using centrifugation. In this way, PBS was replaced by alkaline coupling buffer (0.05 M sodium carbonate, 0.15 M sodium chloride, pH 8.7).
Chelating was performed using the bifunctional chelating agents p-SCN-Bz-DTPA and p-SCN-Bz-DOTA, respectively. For the chelating reaction, the protein (1 to 10 mg/ml) in coupling buffer and a solution of chelating agent of 1 mg/ml in 2% DMSO/water were mixed such that a molar excess of chelating agent was ensured. This was followed by incubation of the mixture at 37° C. for 1 hour. Subsequently, non-bound chelating agent was removed by ultrafiltration in the same vessel (CENTRIPREP YM50 or YM-10;
Millipore) and, as described above, this was re-buffered to pH 4.2 in a loading buffer (0.15 M sodium acetate, 0.15 M sodium chloride, pH 4.2) required for radioactive labelling. The protein concentration during and after this step was re-adjusted to 1-10 mg/ml using UV measurement at 280 nm.
Conditions for the chelating reaction had to be found, which would allow radiolabelling of the antibody without substantially reducing the bioactivity thereof.
The chelated antibody was loaded with a radioactive metal, thereby producing the radioantibody. The isotopes 111indium and 90yttrium were used for loading. Both have comparable chemical and physicochemical properties, being bound as trivalent ions (111In3+, 90Y3+) by the chelating agent. The antibody labelled with 111indium is a γ-emitter and is used clinically to find the individual dose for a patient, while 90yttrium is a β-emitter which is used therapeutically. The half-lives are 67 hours for 111In and 64 hours for 90Y.
111Indium chloride from the company NEN (Perkin Elmer, Belgium) was used for loading. The radioactive metal is supplied in a solution of hydrochloric acid. First of all, the 111InCl3 solution was brought to an HCl concentration of 1 M. Subsequently, this was diluted with 0.05 M HCl to a specific activity of 80-320 mCi/ml, and an aliquot thereof was used for incorporation in the chelated antibody, in which case the added volume of HCl-acidic 111InCl3 solution should be equal to the volume of antibody solution supplied in the coupling buffer of pH 4.2 so as to ensure pH stability. The incubation time was 1 hour at 37° C., with occasional careful mixing.
Subsequently, the filter insert was re-inserted into the filtration cartridge and re-buffered as described above in phosphate buffer, pH 7.2, including a physiological content of sodium chloride, thereby effecting separation of high-molecular weight radiolabelled antibody and unbound 111InCl3. Quantification of 111In incorporation in the chelated antibody was performed using thin layer chromatography. The incorporation rate of radioactive metal was 80-99% of the radioactivity employed.
8. Cell Binding Tests and Scatchard Analysis of Radio-Labelled Recognition Molecules Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
Various tumor cell lines were used to test the binding capability of radiolabelled recognition molecules. In each double determination, a defined number of cells were placed in a 1.5 ml vessel and incubated with increasing amounts of antibodies. Following washing, the amount of bound antibodies was determined on the basis of the counting rate. This value was plotted in a diagram as ratio of bound/non-bound versus bound amount, the slope in the linear region of the curve was determined, and the abscissa intersection was determined (Scatchard analysis, see below). 1×106 cells per batch are required. Following pre-incubation of the cells for one hour on ice, the required amount of cells was placed in reaction vessels, centrifuged (5 min at 1000×g, 25° C.), and the supernatant was removed. Thereafter, this was filled up with PBS/0.1% Tween20/1% BSA to make a volume of 200 μl, subtracting the amount of recognition molecules to be added later. Subsequently, the corresponding recognition molecule was added to make a final volume of 200 μl (about 40 to 500 ng, depending on the recognition molecule), and the batches were incubated for one hour at 4-8° C. Following centrifugation (4 min, 1000×g, 25° C.), the supernatant was removed and the cell pellet carefully resuspended in 500 μl of PBST/1% BSA. After another wash, the cell pellet was measured in the vessel on a gamma counter. The specific counting rates were determined in the initial solutions of defined concentration, and the value in cpm/ng was used as a basis of relativizing the measured values of bound antibody. The abscissa values are plotted as bound molecules of antibody per cell (r). The respective ordinate value is the quotient of binding (r) and free binding, with free binding representing the difference of total amount and amount of bound antibody (values in M in FIG. 12). The abscissa intersection indicates the number of binding sites/cell. The slope of the straight line furnishes the association constant Kass in M−1.
FIG. 11 exemplifies the Scatchard analyses of binding of radiolabelled recognition molecules in scFv format with the sequence SEQ ID NO. 36 (monovalent scFv, FIG. 11a) and 45 (multibody, FIG. 11b) on T47D cells, a Kass of 4.5×106 M−1 and 5.3×106 binding sites/cell for the monovalent scFv and a Kass of 1.9×107 M−1 and 2.6×106 binding sites/cell for the multibody being obtained under these conditions.
In Table 8, the association constants and the number of cell binding sites of various antibodies and antibody formats on K562 cells are summarized and compared with HMFG-1 used and tested under the same conditions.







TABLE 8







Cell binding test and Scatchard analysis with radiolabelled


recognition molecules on K562 cells.















Number of binding




Antibody
Kass [M−1]
sites/cell








mIgG-Panko2
9.5 × 108
1.0 × 105




HMFG-1
2.7 × 108
6.3 × 104




cIgG-Panko1
1.2 × 108
1.9 × 105




cIgG-Panko2
6.1 × 108
1.1 × 105




SEQ ID NO. 36
1.8 × 107
5.5 × 105




SEQ ID NO. 46
4.9 × 107
4.8 × 105










9. Biodistribution of Radiolabelled Recognition Molecules, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope, in an In Vivo Tumor Model
As tumor model, human colon carcinoma tissue (xenograft #5841) was transplanted subcutaneously on nude mice (Ncr: nu/nu, female). 107 MUC1-positive ZR-75-1 breast cancer cells as another tumor model were injected subcutaneously in nude mice (Ncr: nu/nu, female). After about 3-4 weeks, the tumor is palpable under the skin. To each tumor-bearing mouse (n=5 per point in time) 5 μg—of 111In-labelled mIgG-Panko2 in 200 μl was administered into the tail vein. The mice were sacrificed after 5 min, 1 h, 4 h, 8 h, 24 h, 48 h and 72 h, and the radioactivity distribution in the tumor, in serum and in organs was determined. FIG. 12 illustrates the specific accumulation of mIgG-Panko2 in the tumor in % ID/g tumor (relative to injected dose and tumor weight) in a tissue transplant model. In contrast, there is a depletion of radioactivity in the organs and in serum over the time profile as indicated. FIG. 13 summarizes the results with the ZR-75-1 model. The specific uptake of radiolabelled mIgG-Panko2 in the tumor reaches more than 85% ID/g tumor after 72 hours, with accumulation in organs and serum being very low and comparable with healthy mice.
10. Detection of Tumor-Specific Secretory MUC1 in a Sandwich ELISA Using Recognition Molecules Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
Tumor-specific secretory MUC1 can be detected in a sandwich ELISA. A MUC1-specific antibody was used as scavenger antibody of MUC1, and a recognition molecule of the invention was used to detect the tumor-specific MUC1. To detect core 1-positive secretory MUC1, a recognition molecule according to the invention is used as scavenger, for example, and a core 1-specific antibody is used to detect the core 1 antigen. A third enzyme- or fluorescence-coupled antibody must be used to detect the secondary antibody.
The supernatants of three tumor cell lines (K562, ZR-75-1 and T47D) were analyzed as examples. The results are illustrated in Table 9. 105 cells per ml of cell culture medium were seeded, cultured for 4 days without replacing the medium, an aliquot was subsequently drawn, and the cell culture supernatant was separated from the cell pellet by centrifugation. 50 μl of undiluted supernatants were used in the ELISA. The sandwich ELISA was carried out by coating the microtiter plate with scavenger antibody (HMFG-1 or mIgG-Panko2, 1 μg/ml) in PBS at 4° C. overnight. Three different concentrations of antibody were used for coating (1 μg/ml, 2 μg/ml and 4 μg/ml). The 1 μg/ml coating was found to be the most sensitive in the sandwich ELISA. Subsequently, the coated plates were washed twice with PBS and blocked in 5% BSA, 0.05% Tween 20 in PBS for 1.5 hours at room temperature. The blocking buffer was removed, the plates were washed once more with 0.1% Tween 20 in PBS (washing buffer), the samples were added and incubated at room temperature for 1.5 hours. Cell culture medium or 2% BSA in washing buffer (dilution buffer for secondary antibody) was used as negative control. Positive control was not available. For a MUC1-core 1 sandwich ELISA, neuraminidase treatment was performed—after washing three times in the wells intended for that purpose. To this end, a neuraminidase solution (DADE Behring, Germany) was diluted 1:5 in imidazole buffer (0.68 g of imidazole, 0.19 g of CaCl2 and 0.4 g of NaCl in 100 ml of H2O, pH 6.8) and incubated at 50 μl/well for 30 min at 37° C. As a control, the imidazole buffer with no neuraminidase solution was incubated in a corresponding well. Subsequently, the wells were washed three times, and the biotinylated mIgG-Panko2 (EZLink sulfo-NHS-LC-biotin, Pierce) or an anti-core 1 antibody (mIgM-Karo4) to detect MUC1 or the core 1-bearing MUC1 was added in 2% BSA in washing buffer and incubated at room temperature for another hour. Again, this was washed three times, followed by addition of peroxidase-coupled streptavidin or peroxidase-coupled anti-mouse IgM(μ) antibody (Dianova) diluted 1:300 and 1:5000, respectively, in 2% BSA in washing buffer and incubation for 1 hour at room temperature. Finally, the plates were washed twice in washing buffer and once in PBS. The staining reaction was performed in 25 mM citric acid, phosphate buffer, pH 5.0, with 0.04% H2O2 and 0.4 mg/ml o-phenylenediamine (Sigma) in the dark at room temperature. The staining reaction was quenched by adding 2.5 N sulfuric acid (final concentration 0.07 N) and measured in an ELISA Reader at 492 nm with a 620 nm reference filter.







TABLE 9







Analysis of tumor-specific secretory MUC1 in culture supernatants


of two cell lines and detection of core 1 before and after


neuraminidase treatment in a sandwich ELISA









Scavenger Ab
HMFG-1
mIgG-Panko2


Detection Ab
mIgG-
anti-core 1 (mIgM-Karo4)










Cell line
Panko2
−Neuraminidase
+Neuraminidase





K562
+
−
+


ZR-75-1
+++
−
+


T47D
++
−
+++









11. Detection of MUC1 in Serum of Colon Carcinoma Patients by Means of Recognition Molecules Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
A sandwich ELISA as described above was used to detect soluble MUC1 in patient serums. The anti-MUC1 antibody 115D8 (scavenger in the commercial CA 15-3 test) or mIgG-Panko2 (1 μg/ml PBS) was used as scavenger antibody. After blocking with 2% BSA/PBS, the serums were applied. 24 different colon carcinoma serums at different dilutions (from undiluted to 1:32 diluted) were investigated. Dilutions of a defined serum from a mammary carcinoma patient (152 U/ml, Enzymun Test CA 15-3, Boehringer Mannheim) were used as standard. A limit of 23 U/ml (average value for normal serums in the literature) was established. To detect bound MUC1, the mIgG-Panko2 was compared with two other anti-MUC1 antibodies, i.e. DF3 (detection antibody in the CA 15-3 test) and HMFG-1. All three antibodies were biotinylated (EZ-Link sulfo-NHS-LC-biotin, Pierce) and, after washing three times with PBS+0.1% Tween 20, coupled with streptavidin-POD (1:300 in 0.2% BSA/PBS) and detected with TMB as peroxidase substrate (see above).
The data are summarized in Table 10. Soluble MUC1 in serum of colon carcinoma patients gives significantly less binding with the recognition molecule mIgG-Panko2 of the invention compared to the well-known anti-MUC1 antibodies DF3 and HMFG-1.







TABLE 10







Detection of serum MUC1 in an ELISA


using various anti-MUC1 antibodies.












Scavenger
Detection
Samples above




antibody
antibody
limit/total samples
%















115D8
DF3
20/24 
83



115D8
HMFG-1
19/24 
79



115D8
mIgG-Panko2
8/24
33



mIgG-Panko2
mIgG-Panko2
8/24
33





1/12
8









12. Tumor Therapy for the Reduction of MUC1-Positive Tumors in an In Vivo Tumor Model Using Radiolabelled Recognition Molecules Specifically Recognizing the Glycosylated MUC1 Tumor Epitope
The therapeutic potential of mIgG-Panko2 was investigated in the ZR-75-1 tumor model (see Example 9). To this end, the chelated recognition molecules (see Example 7) were loaded (pH 4.5, 37° C., 30 min; cf. incorporation of 111indium) with 90yttrium (a β-emitter to destroy tumor cells), and the stability was controlled using thin layer chromatography.
One week to eight weeks after subcutaneous injection of the ZR-75-1 cells (depending on the desired tumor size as model for the treatment of solid medium-sized (about 0.3 cm3) or large tumors (>0.5 cm3) or treatment of minimal residual disease (<0.05 cm3)), the tumor-bearing mice were given 200 μl into the tail vein. The injection solution contained the 90Y-labelled mIgG-Panko2 (100 μCi per dose; specific activity: 3 mCi/mg antibody) in Ca/Mg-PBS with 4% fetal calf serum to protect from radiolysis. Control groups received the same injection with no radioactively labelled recognition molecule or with radiolabelled control antibody (90Y-MOPC21).
Body weight and tumor size were measured twice a week and compared. The relative tumor growth was determined considering the respective tumor size at the beginning of treatment. A second injection (50 μCi per dose) was given about three weeks after the first treatment. This type of treatment resulted in a strong anti-tumor effect in all tested animals. When treating small (<0.05 cm3) or medium-sized tumors (about 0.3 cm3), it was possible to completely inhibit tumor growth over the entire period of observation (6 weeks; FIGS. 14a and 14b). In animals with very large tumors (>0.5 cm3) at the beginning of treatment, it was possible to suppress tumor growth for about three weeks (FIG. 14c). Due to the tumor size no longer within the bounds of what is reasonable, a second injection was not possible in the control group.
Treatment with an irrelevant 90Y-labelled antibody (MOPC21) at the same dosage gives only minor reduction of tumor growth compared to untreated animals (FIG. 14d), which may be due to non-specific irradiation as a result of relatively slow depletion of the antibody in the serum.
Apart from minor myelotoxicity, treatment with the 90Y-labelled mIgG-Panko2 showed no side effects.
13. Detection of Antibody-Dependent Cellular Cytotoxicity of Recognition Molecules, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope, in an In Vitro Model
The antibody-dependent cellular cytotoxicity (ADCC) of the recognition molecules according to the invention was investigated in an europium release test. The target cells (ZR75-1 or MCF-7; 5×106) were incubated for 10 minutes at 4° C. in 800 μl of europium buffer (50 mM HEPES, pH 7.4, 93 mM NaCl, 5 mM KCl, 2 mM MgCl2, 10 mM diethylenetriaminepentaacetic acid, 2 mM europium(III) acetate), electroporated (710 V, 1 pulse, 30 μs) in a Multiporator (Eppendorf), and subsequently incubated on ice for another 10 min. Thereafter, the cells were washed 5 times in RPMI 1640/5% FCS and seeded in a 96-well round-bottom plate (Nunc; 5×103 in 100 μl per well). Following addition of 20 μl of mIgGPanko2, HMFG-1, cIgG-Panko1 or cIgG-Panko2 at varying concentrations (0.2 to 25 μg/ml final concentration in 200 μl incubation volume) or the corresponding controls (medium, isotype control hIgG), human peripheral blood cells (80 μl/well, preparation see Example 14) were added as effector cells, using an effector cell/target cell ratio of 5 to 100:1. 80 μl RPMI/FCS with no effector cells was added to determine the spontaneous release. Maximum release was determined after complete lysis of the target cells with ethanol. Following incubation in an incubator at 37° C. for 4 to 20 hours, the plate was centrifuged at 500×g for 5 minutes, and 20 μl of sample each time was pipetted in 200 μl per well of enhancement solution (Perkin-Elmer Wallac). Following incubation for 15 minutes at room temperature, the fluorescence was determined (Victor2 Fluorometer, Perkin-Elmer Wallac). The specific cytotoxicity is obtained from the equation (experimental lysis−spontaneous lysis)/(maximum lysis−spontaneous lysis).
The chimeric IgGs of Panko1 and Panko2 show high specific lysis of the MUC1-positive target cells (FIG. 15a). The murine IgG of Panko2 shows somewhat lower cytotoxicity compared to the chimeric recognition molecules, but a clearly greater effect than the murine anti-MUC1 antibody HMFG-1, with slight lysis being observed only at the highest tested concentration for the latter (FIG. 15b).
14. Analysis of Binding of Recognition Molecules, which Specifically Recognize the Glycosylated MUC1 Tumor Epitope, to Human Blood Cells
Expression of MUC1 on hematopoietic cells could be detected by means of various anti-MUC1 antibodies. However, differing results with different anti-MUC1 antibodies allow the conclusion that recognition of non-epithelial MUC1 is highly dependent on the fine specificity of the respective antibody, and that varying glycosylation patterns of MUC1 are present on the cells. Binding of the recognition molecules of the invention to human blood cells was investigated using flow cytometry.
Human peripheral blood cells were obtained from the blood of healthy donors using density centrifugation (Ficoll-Hypaque). The cell layer was removed and washed 3 times with RPMI 1640/5% FCS. The cells were used either in fresh condition or cryopreserved and thawed in RPMI 1640/10% FCS prior to use in cell staining or as effector cells in the ADCC test (see Example 13). To stimulate human T cells, the isolated blood cells were incubated in RPMI/FCS+1 μg/ml PHA+60 U/ml hIL-2 in an incubator for 3 to 8 days. Stimulation was monitored in flow cytometry by detecting the activation marker CD25.
The isolated blood cells were incubated with mIgG-Panko1, mIgG-Panko2, HMFG-1 or DF3 and with an mIgG1 isotype control as a control for one hour on ice. Following washing with PBS, the cells were incubated with Cy3-conjugated goat anti-mouse Ig (Dianova) and/or with a CD marker-specific (CD3, CD14, CD19), FITC-labelled antibody (30 min, 4° C., in the dark). Following washing, the cells were analyzed using flow cytometry.
None of the tested antibodies binds to non-activated T cells. After PHA stimulation, the MUC1 expression on human T cells is upregulated. This MUC1 is detected strongly by HMFG-1 and DF3, but only to a minor extent by Panko2. Panko1 shows no binding to PHA-stimulated blood cells (FIG. 16). Panko2 and DF3 recognize MUC1 neither on monocytes nor on B cells. In contrast, HMFG-1 and Panko1 give weak binding to monocytes and HMFG-1 also binds to B cells (FIG. 16), the detected surface densities being significantly lower than those on activated T cells.



BRIEF DESCRIPTION OF THE SEVERAL VIEWS OF THE DRAWINGS
FIG. 1: Vector for cloning and bacterial expression of single-chain antibody fragments.
FIG. 2: Cloning diagram for the preparation of single-chain antibody fragments having different linker length.
FIG. 3: Vector system for cloning and eukaryotic expression of chimeric antibodies in IgG1 or IgM format.
FIG. 4: Binding of the recognition molecules of the invention, mIgG-Panko1 and mIgG-Panko2, to glycosylated and non-glycosylated MUC1 peptide in an ELISA. Binding of the recognition molecules of the invention, mIgG-Panko1 and mIgG-Panko2, to glycosylated and non-glycosylated MUC1 peptide in an ELISA. The non-glycosylated 30mer with the sequence APPAHGVTSAPDTRPAPGSTAPPAHGVTS (SEQ ID NO: 78) and the glycosylated 30mer with the sequence APPAHGVTSAPDT[GalNAcα]R PAPGSTAPPAHGVTSA (SEQ ID NO: 71) were used as antigens and bound in PBS to the plate. The mIgG-Panko1 and mIgG-Panko2 antibodies were employed at a concentration of 0.5 μg/ml in the ELISA.
FIG. 5: Comparison of specific binding of the anti-MUC1 antibodies HMFG-1, C595 and SM3 with mIgG-Panko1 and mIgG-Panko2 to glycosylated and non-glycosylated MUC1 peptide in an ELISA. Comparison of specific binding of the anti-MUC1 antibodies HMFG-1, C595 and SM3 with mIgG-Panko1 and mIgG-Panko2 to glycosylated and non-glycosylated MUC1 peptide in an ELISA. The non-glycosylated 30mer with the sequence APPAHGVTSAPDTRPAPGSTAPPAHGVTS (SEQ ID NO: 78) and the glycosylated 30mer with the sequence APPAHGVTSAPDT[GalNAcα]RPAPGSTAPPAHGVTSA(SEQ ID NO: 71) were used as antigens and dried slightly on the plate in H2O. The antibodies were employed at a concentration of 10 μg/ml in the ELISA.
FIG. 6: Specific binding of various preferred formats of recognition molecules of the invention in an ELISA, exemplified using non-glycosylated and glycosylated 30mer MUC1 peptide. Specific binding of various preferred formats of recognition molecules of the invention in an ELISA, exemplified using non-glycosylated and glycosylated 30mer MUC1 peptide. The non-glycosylated 30mer with the sequence APPAHGVTSAPDTRPAPGSTAPPAH GVTS (SEQ ID NO: 78) and the glycosylated 30mer with the sequence APPAHGVTSAPDT [GalNAcα]RPAPGSTAPPAHGVTSA (SEQ ID NO: 71) were used as antigens and bound in PBS to the plate. The two scFv formats SEQ ID Nos. 36 and 45 were used with 0.5 μg/ml, the murine IgG with 0.1 μg/ml and the chimeric IgG with 0.01 μg/ml. As different secondary antibodies are used for these various formats, the ELISA data should be assessed merely qualitatively.
FIG. 7: Dependence of binding of the recognition molecules mIgG-Panko1 and mIgG-Panko2 of the invention on the number of tandem repeats in non-glycosylated MUC1 peptides compared to the MUC1-specific antibodies SM3 and C595 in an ELISA. Dependence of binding of the recognition molecules mIgG-Panko1 and mIgG-Panko2 of the invention on the number of tandem repeats in non-glycosylated MUC1 peptides compared to the MUC1-specific antibodies SM3 and C595 in an ELISA. A series of non-glycosylated MUC1 peptides of varying length with the sequence [VTSAPDTRPAPGSTAPPAHG]n wherein n=1 (SEQ ID NO: 72), 3 (SEQ ID NO: 73) and 5 (SEQ ID NO: 74) (TR1, TR3 and TR5), was used as antigens and dried slightly on the plate in H2O. The antibodies were employed at a concentration of 10 μg/ml.
FIG. 8: Dependence of binding of the recognition molecules mIgG-Panko1 and mIgG-Panko2 of the invention on the number of tandem repeats (multiple glycosylated PDTR regions) compared to the MUC1-specific antibodies SM3 and C595 in an ELISA. A series of glycosylated MUC1 peptides of varying length with the sequence A[HGVTSAPDT(GalNAcα)RPAPGSTAPPA]n, wherein n=1 (SEQ ID NO: 75), 3 (SEQ ID NO: 76) and 5 (SEQ ID NO: 77) (TR1, TR3 and TR5), was used as antigens and dried slightly on the plate in H2O. The antibodies were employed at a concentration of 10 μg/ml.
FIG. 9: Fluorescence labelling of cells of the tumor cell line T47D (mammary carcinoma) with the MUC1-specific recognition molecule mIgG-Panko2.
FIG. 10: Fluorescence labelling of cells of the tumor cell line K562 (erythroid leukemia) with the MUC1-specific recognition molecule cIgG-Panko1.
FIG. 11A-B: Scatchard diagram for the analysis of cell binding of radiolabelled MUC1-specific recognition molecules. Binding data of the two scFv formats SEQ ID NO. 36 (a) and SEQ ID NO. 45 (b) are exemplified. r: bound molecules per cell, A: employed concentration of radiolabelled recognition molecule [M], x: percentage bound to cells [M]. The difference A−x represents the concentration of free recognition molecules in the batch. The corresponding straight-line equation is given at the top, the slope of the straight-line representing the association constant.
FIG. 12: Specific accumulation of the radiolabelled recognition molecule mIgG-Panko2 in a tumor in a mouse xenotransplant model. Each tumor-bearing mouse (n=5 per point in time) was administered i.v. with 5 μg of 111In-labelled mIgG-Panko2. The mice were sacrificed after the time as indicated, and accumulation in the tumor, relative to injected dose and tumor weight (% ID/g), was determined.
FIG. 13: High specific accumulation of the radiolabelled recognition molecule mIgG-Panko2 in a tumor in a mouse-ZR-75-1 tumor cell model. Each tumor-bearing mouse (n=6 per point in time) was administered i.v. with 5 μg of 111In-labelled mIgG-Panko2. The mice were sacrificed after the time as indicated, and accumulation in the tumor, in serum and organs, relative to injected dose and tumor or organ weight (% ID/g), was determined.
FIG. 14A-D: Inhibition of tumor growth in tumor-bearing mice after treatment with the radiolabelled recognition molecule mIgG-Panko2. On day 8 (14a; small tumors: <0.05 cm3), on day 36 (14b; medium-sized tumors: about 0.3 cm3) and on day 57 (14c; large tumors: >0.5 cm3) after subcutaneous injection of the ZR-75-1 cells, the tumor-bearing mice were given 200 μl into the tail vein. The injection solution contained the 90Y-labelled mIgG-Panko2 (100 μCi per dose; specific activity: 3 mCi/mg antibody) in Ca/Mg-PBS with 4% fetal calf serum to protect from radiolysis. Control groups received the same injection with no radioactively labelled recognition molecule. In the event of small and medium-sized tumors, a second injection (50 μCi) was effected about 3 weeks later.
FIG. 14d shows the treatment of tumor-bearing mice with 90Y-mIgG-Panko2 compared to an irrelevant radiolabelled control antibody 90Y-MOPC21.
FIG. 15A-B: Specific mediation of antibody-dependent cellular cytotoxicity by the recognition molecules of the invention, Panko1 and Panko2. The antibodies were used at a concentration of 0.2 to 25 μg/ml. (a) The cIgG formats of Panko1 and Panko2 show high specific lysis of the MUC1-positive ZR-75-1 cells. (b) The mIgG Panko2 also mediates specific tumor cell lysis and shows a significantly greater effect than the murine anti-MUC1 antibody HMFG-1, with slight lysis being observed only at the highest tested concentration (25 μg/ml) for the latter.
FIG. 16: Analysis of binding of recognition molecules of the invention to human blood cells. Human peripheral blood cells were obtained from the blood of healthy donors by means of density centrifugation. To stimulate human T cells, the isolated blood cells were incubated in RPMI/FCS+1 μg/ml PHA+60 U/ml hIL-2 in an incubator for 3 to 8 days. The isolated blood cells were incubated with mIgG-Panko1, mIgG-Panko2, HMFG1, DF3 or mIgG1 (control) and stained with Cy3-conjugated goat anti-mouse Ig (Dianova) and/or with a CD marker-specific (CD3, CD14, CD19), FITC-labelled antibody. Following washing, the cells were analyzed using flow cytometry.



The recognition molecules Panko1 and Panko2 show no or only low binding to human blood cells. In contrast, the MUC1-specific antibodies HMFG-1 and DF3 bind strongly to PHA-stimulated T cells, and HMFG-1 also binds to B cells and monocytes.
REFERENCES


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DESCRIPTION OF SEQUENCES












CDR sequences











SEQ ID NO. 1 
DAWMD


 


SEQ ID NO. 2 
NYWMN


 


SEQ ID NO. 3 
EIRSKANNHATYYAESVKG


 


SEQ ID NO. 4 
EIRLKSNNYTTHYAESVKG


 


SEQ ID NO. 5 
GGYGFDY


 


SEQ ID NO. 6 
HYYFDY


 


SEQ ID NO. 7 
RSSQSIVHSNGNTYLE


 


SEQ ID NO. 8 
RSSKSLLHSNGITYFF


 


SEQ ID NO. 9 
KVSNRFS


 


SEQ ID NO. 10
QMSNLAS


 


SEQ ID NO. 11
FQGSHVPLT


 


SEQ ID NO. 12
AQNLELPPT










CDR sequences (canonical structure variants)











SEQ ID NO. 13
NYWVN


 


SEQ ID NO. 14
NYWIN


 


SEQ ID NO. 15
NYWYN


 


SEQ ID NO. 16
NYWWN


 


SEQ ID NO. 17
DAWID


 


SEQ ID NO. 18
DAWVD


 


SEQ ID NO. 19
DAWYD


 


SEQ ID NO. 20
DAWWD


 


SEQ ID NO. 21
EIRSKANNYATYYAESVKG


 


SEQ ID NO. 22
EIRLKSNKYTTHYAESVKG


 


SEQ ID NO. 23
EIRLKSNSYTTHYAESVKG


 


SEQ ID NO. 24
RPSQSIVHSNGNTYLE


 


SEQ ID NO. 25
RSSQSIVHSNGNTYFE


 


SEQ ID NO. 26
RPSQSIVHSNGNTYFE


 


SEQ ID NO. 27
RPSKSLLHSNGITYFF


 


SEQ ID NO. 28
RSSKSLLHSNGITYLF


 


SEQ ID NO. 29
RPSKSLLHSNGITYLF


 


SEQ ID NO. 30
FQGSHPPLT


 


SEQ ID NO. 31
AQNLEPPPT










variable heavy chains





SEQ ID NO. 32


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSS


 


SEQ ID NO. 33


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSS





variable light chains





SEQ ID NO. 34


DIVLTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPK


LLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP


LTFGDGTKLELKRA


 


SEQ ID NO. 35


DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSNGITYFFWYLQKPGLSPQ


LLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELP


PTFGGGTKLEIKRA





VH/VL pairs











Panko1
SEQ ID NO. 32



SEQ ID NO. 34


 


Panko2
SEQ ID NO. 33



SEQ ID NO. 35










various single chain Fv formats





SEQ ID NO. 36


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSGGGGSGGGGSGGSARDIVLTQTPLSLPVS


LGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVP


DRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRA


AAHHHHHHGAAEQKLISEEDLNGAA


 


SEQ ID NO. 37


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSGSGSSADIVLTQTPLSLPVSLGDQASISC


RSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG


TDFTLKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHG


AAEQKLISEEDLNGAA


 


SEQ ID NO. 38


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSGGSSADIVLTQTPLSLPVSLGDQASISCR


SSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGT


DFTLKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGA


AEQKLISEEDLNGAA


 


SEQ ID NO. 39


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSGSSADIVLTQTPLSLPVSLGDQASISCRS


SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTD


FTLKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAA


EQKLISEEDLNGAA


 


SEQ ID NO. 40


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSSSADIVLTQTPLSLPVSLGDQASISCRSS


QSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDF


TLKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAE


QKLISEEDLNGAA


 


SEQ ID NO. 41


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSSADIVLTQTPLSLPVSLGDQASISCRSSQ


SIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFT


LKISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQ


KLISEEDLNGAA


 


SEQ ID NO. 42


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASSADIVLTQTPLSLPVSLGDQASISCRSSQS


IVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTL


KISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQK


LISEEDLNGAA


 


SEQ ID NO. 43


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSASADIVLTQTPLSLPVSLGDQASISCRSSQSI


VHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLK


ISRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQKL


ISEEDLNGAA


 


SEQ ID NO. 44


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSAADIVLTQTPLSLPVSLGDQASISCRSSQSIV


HSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI


SRVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQKLI


SEEDLNGAA


 


SEQ ID NO. 45


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSADIVLTQTPLSLPVSLGDQASISCRSSQSIVH


SNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS


RVEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQKLIS


EEVHQ


 


SEQ ID NO. 46


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSSDIVLTQTPLSLPVSLGDQASISCRSSQSIVHS


NGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR


VEAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQKLISE


EDLNGAA


 


SEQ ID NO. 47


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSDIVLTQTPLSLPVSLGDQASISCRSSQSIVHSN


GNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV


EAEDLGVYYCFQGSHVPLTFGDGTKLELKRAAAHHHHHHGAAEQKLISEE


DLNGAA


 


SEQ ID NO. 48


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSGGGGSGGGGSGGSARDIVMTQAAFSNPVTL


GTSASISCRSSKSLLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPD


RFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAA


AHHHHHHGAAEQKLISEEDLNGAA


 


SEQ ID NO. 49


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSGSGSSADIVMTQAAFSNPVTLGTSASISCR


SSKSLLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGT


DFTLRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGA


AEQKLISEEDLNGAA


 


SEQ ID NO. 50


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSGGSSADIVMTQAAFSNPVTLGTSASISCRS


SKSLLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTD


FTLRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAA


EQKLISEEDLNGAA


 


SEQ ID NO. 51


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSGSSADIVMTQAAFSNPVTLGTSASISCRSS


KSLLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDF


TLRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAE


QKLISEEDLNGAA


 


SEQ ID NO. 52


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSSSADIVMTQAAFSNPVTLGTSASISCRSSK


SLLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFT


LRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQ


KLISEEDLNGAA


 


SEQ ID NO. 53


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSSADIVMTQAAFSNPVTLGTSASISCRSSKS


LLHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTL


RISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQK


LISEEDLNGAA


 


SEQ ID NO. 54


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASSADIVMTQAAFSNPVTLGTSASISCRSSKSL


LHSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLR


ISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKL


ISEEDLNGAA


 


SEQ ID NO. 55


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSASADIVMTQAAFSNPVTLGTSASISCRSSKSLL


HSNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRI


SRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKLI


SEEDLNGAA


 


SEQ ID NO. 56


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSAADIVMTQAAFSNPVTLGTSASISCRSSKSLLH


SNGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRIS


RVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKLIS


EEDLNGAA


 


SEQ ID NO. 57


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSADIVMTQAAFSNPVTLGTSASISCRSSKSLLHS


NGITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISR


VEAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKLISE


EDLNGAA


 


SEQ ID NO. 58


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSSDIVMTQAAFSNPVTLGTSASISCRSSKSLLHSN


GITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRV


EAEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKLISEE


DLNGAA


 


SEQ ID NO. 59


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSDIVMTQAAFSNPVTLGTSASISCRSSKSLLHSNG


ITYFFWYLQKPGLSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVE


AEDVGVYYCAQNLELPPTFGGGTKLEIKRAAAHHHHHHGAAEQKLISEED


LNGAA





Murine Antibodies





light chain of a murine IgG1 (kappa chain)


SEQ ID NO. 60


DIVLTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPK


LLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP


LTFGDGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN


VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE


ATHKTSTSPIVKSFNRNEC


 


SEQ ID NO. 61


DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSNGITYFFWYLQKPGLSPQ


LLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELP


PTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN


VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE


ATHKTSTSPIVKSFNRNEC


 


heavy chain of murine IgG1


SEQ ID NO. 62


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYF


PEPVTVTWNSGSLSSGVHTFPAVLESDLYTLSSSVTVPSSPRPSETVTCN


VAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLT


PKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSEL


PIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKE


QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFV


YSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSHSPGK


 


SEQ ID NO. 63


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP


EPVTVTWNSGSLSSGVHTFPAVLESDLYTLSSSVTVPSSPRPSETVTCNV


AHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTP


KVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELP


IMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKEQ


MAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVY


SKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLSHSPGK





murine antibodies











mIgG-Panko1 
SEQ ID NO. 60



SEQ ID NO. 62


 


mIgG-Panko2 
SEQ ID NO. 61



SEQ ID NO. 63










Chimeric antibodies (mouse/human)





heavy chain of chimeric IgG1 (gamma chain)


SEQ ID NO. 64


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSGSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF


PEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC


NVNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT


LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTY


RVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT


LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDS


DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK


 


SEQ ID NO. 65


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSGSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP


EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICN


VNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTL


MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR


VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL


PPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD


GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK


 


heavy chain of a chimeric IgM (μ chain)


SEQ ID NO. 66


EVKLVESGGGLVQPGGSMKLSCAASGFTFSDAWMDWVRQSPEKGLEWVAE


IRSKANNHATYYAESVKGRFTISRDVSKSSVYLQMNNLRAEDTGIYYCTR


GGYGFDYWGQGTTLTVSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDF


LPDSITLSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTD


EHVVCKVQHPNGNKEKNVPLPVIAELPPKVSVFVPPRDGFFGNPRKSKLI


CQATGFSPRQIQVSWLREGKQVGSGVTTDQVQAEAKESGPTTYKVTSTLT


IKESDWLGQSMFTCRVDHRGLTFQQNASSMCVPDQDTAIRVFAIPPSFAS


IFLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFS


AVGEASICEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYL


LPPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPM


PEPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKST


GKPTLYNVSLVMSDTAGTCY


 


SEQ ID NO. 67


EVKLVESGGGLVQPGGSMKLSCVASGFTFSNYWMNWVRQSPEKGLEWVAE


IRLKSNNYTTHYAESVKGRFTISRDDSKSSVSLQMNNLRVEDTGIYYCTR


HYYFDYWGQGTTLTVSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFL


PDSITLSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMQGTDE


HVVCKVQHPNGNKEKNVPLPVIAELPPKVSVFVPPRDGFFGNPRKSKLIC


QATGFSPRQIQVSWLREGKQVGSGVTTDQVQAEAKESGPTTYKVTSTLTI


KESDWLGQSMFTCRVDHRGLTFQQNASSMCVPDQDTAIRVFAIPPSFASI


FLTKSTKLTCLVTDLTTYDSVTISWTRQNGEAVKTHTNISESHPNATFSA


VGEASICEDDWNSGERFTCTVTHTDLPSPLKQTISRPKGVALHRPDVYLL


PPAREQLNLRESATITCLVTGFSPADVFVQWMQRGQPLSPEKYVTSAPMP


EPQAPGRYFAHSILTVSEEEWNTGETYTCVVAHEALPNRVTERTVDKSTG


KPTLYNVSLVMSDTAGTCY


 


light chain of a chimeric IgG1 or IgM (kappa chain)


SEQ ID NO. 68


DIVLTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPK


LLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVP


LTFGDGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK


VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE


VTHQGLSSPVTKSFNRGEC


 


SEQ ID NO. 69


DIVMTQAAFSNPVTLGTSASISCRSSKSLLHSNGITYFFWYLQKPGLSPQ


LLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELP


PTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK


VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACE


VTHQGLSSPVTKSFNRGEC





chimeric antibodies











cIgG-Panko1
SEQ ID NO. 64



SEQ ID NO. 68


cIgG-Panko2
SEQ ID NO. 65



SEQ ID NO. 69


cIgM-Panko1
SEQ ID NO. 66



SEQ ID NO. 68


cIgM-Panko1
SEQ ID NO. 67



SEQ ID NO. 69

## Claims

1. A method of providing a molecule for tumor recognition comprising,
a. providing a recombinant recognition molecule which comprises a variable heavy chain and a variable light chain and which specifically binds to a glycosylated MUC1 tumor epitope, wherein
the variable heavy chain comprises (i) a CDRH1 region that comprises the amino acid sequence of SEQ ID NO: 1 or 2; (ii) a CDRH2 region that comprises the amino acid sequence of SEQ ID NO: 3 or 4; and (iii) a CDRH3 region that comprises the amino acid sequence of SEQ ID NO: 5 or 6; and
the variable light chain comprises (i) a CDRL1 region that comprises the amino acid sequence of SEQ ID NO: 7 or 8; (ii) a CDRL2 region that comprises the amino acid sequence of SEQ ID NO: 9 or 10; and (iii) a CDRL3 region that comprises the amino acid sequence of SEQ ID NO: 11 or 12;
b. modifying the recombinant recognition molecule by one or more mutations in one or more amino acid sequences set forth in step a., wherein single amino acids are replaced by amino acids having analogous physicochemical properties,
c. selecting a recombinant recognition molecule modified in step b. that retains binding specificity towards the glycosylated MUC1 tumor epitope, and
d. providing the modified recombinant recognition molecule selected in step c.

2. The method of claim 1, wherein the modification is a replacement by an equivalent canonical structure.

3. The method of claim 1, wherein the modified recombinant recognition molecule comprises a CDRH1 region variant comprising I, Y, W, or V substituted for M at position 4 of SEQ ID NO:1 or 2.

4. The method of claim 1, wherein the modified recombinant recognition molecule comprises a CDRH2 region variant selected from (a) a variant that has K or S substituted for N at position 8 of SEQ ID NO: 4; and (b) a variant that has Y substituted for H at position 9 of SEQ ID NO: 3.

5. The method of claim 1, wherein the modified recombinant recognition molecule comprises a CDRL1 region variant selected from (a) a variant that has P substituted for S at position 2 of SEQ ID NO: 7 or 8; (b) a variant that has F substituted for L at position 15 of SEQ ID NO: 7; and (c) a variant that has L substituted for F at position 15 of SEQ ID NO: 8.

6. The method of claim 1, wherein the modified recombinant recognition molecule comprises a CDRL3 region variant selected from (a) a variant that has P substituted for V at position 6 of SEQ ID NO: 11; and (b) a variant that has P substituted for L at position 6 of SEQ ID NO: 12.

7. The method of claim 1, wherein the recombinant recognition molecule comprises:
(a) an FRH1 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














1
E


2
V


3
K


4
L


5
V


6
E


7
S


8
G


9
G


10
G


11
L


12
V


13
Q


14
P


15
G


16
G


17
S


18
M


19
K


20
L


21
S


22
C


23
A or V


24
A, V, S or T


25
S


26
G


27
Y, F, S or D


28
T


29
F, L or I


30
S;








(b) an FRH2 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














36
W


37
V


38
R


39
Q


40
S


41
P


42
E


43
K


44
G


45
L


46
E


47
W


48
V


49
A;








(c) an FRH3 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














66
R


67
F


68
T


69
I


70
S


71
R


72
D


73
D or V


74
S


75
K


76
S


77
S


78
V


79
Y or S


80
L


81
Q


82
M


 82a
N


 82b
N


 82c
L


83
R


84
A or V


85
E


86
D


87
T


88
G


89
I


90
Y


91
Y


92
C


93
T


94
R, G, N, K or S.








(d) an FRH4 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














103
W


104
G


105
Q


106
G


107
T


108
T


109
L


110
T


111
V


112
S


113
S or A;








(e) an FRL1 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














1
D


2
I, V or L


3
V


4
M or L


5
T


6
Q


7
T or A


8
P or A


9
L or F


10
S


11
L or N


12
P


13
V


14
S or T


15
L


16
G


17
D or T


18
Q or S


19
A


20
S


21
I


22
S


23
C;








(f) an FRL2 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














35
W


36
Y


37
L


38
Q


39
K


40
P


41
G


42
Q or L


43
S


44
P


45
K or Q


46
L


47
L


48
I or V


49
Y;








(g) an FRL3 region comprising the following sequence, wherein the amino acid position corresponds to the numbering according to Kabat,














57
G


58
V


59
P


60
D


61
R


62
F


63
S


64
G or S


65
S


66
G


67
S


68
G


69
T


70
D


71
F


72
T


73
L


74
K or R


75
I


76
S


77
R


78
V


79
E


80
A


81
E


82
D


83
L or V


84
G


85
V


86
Y


87
Y


88
C; or








(h) an FRL4 region comprising the following sequence, wherein the amino acid position to the numbering according to Kabat,














 98
F


 99
G


100
G or D


101
G


102
T


103
K


104
L


105
E


106
I or L


 106a
K


107
R


108
A.