# Patent

## Title
Immunostimulatory recombinant intracellular pathogen immunogenic compositions and methods of use

## Abstract

Immunogenic compositions comprising recombinant intracellular pathogens that have been transformed to express recombinant immunogenic antigens of the same or other intracellular pathogens and immunostimulatory molecules are provided. Exemplary immunogenic compositions include, but are not limited to, recombinant BCG expressing Mycobacteria major extracellular proteins and immunostimulatory molecules.

## Background
CROSS REFERENCE TO RELATED APPLICATIONS
This application claims the benefit under 35 U.S.C. §371 to PCT/2007/66350 filed Apr. 10, 2007, which claims the benefit under 35 U.S.C. §119(e) to U.S. Provisional Patent Application No. 60/744,557 filed Apr. 10, 2006, and is a continuation-in-part of co-pending U.S. patent application Ser. No. 10/595,385 filed Apr. 13, 2006 which is a national phase application of International Application No. PCT/US04/34206 filed Oct. 15, 2004 and which claims the benefit under 35 U.S.C. §119(e) to U.S. Provisional Patent Application No. 60/512,565 filed Oct. 16, 2003. The entire contents of each of these applications are incorporated by reference herein.


STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH
This invention was made with Government support under Grant No. AI31338 awarded by the Department of Health and Human Services. The Government has certain rights in this invention.


FIELD OF THE INVENTION
The present invention generally relates to immunogenic compositions derived from recombinant intracellular pathogenic bacteria. Moreover, the immunogenic compositions of the present invention comprise recombinant Mycobacteria that secrete pathogen intracellular proteins alone or in combination with host immunostimulatory molecules. The immunogenic compositions of the present invention are useful in inducing immune responses in hosts.
BACKGROUND OF THE INVENTION
It has long been recognized that parasitic microorganisms possess the ability to infect animals thereby causing disease and often death. Pathogenic agents have been a leading cause of death throughout history and continue to inflict immense suffering. Though the last hundred years have seen dramatic advances in the prevention and treatment of many infectious diseases, complicated host-parasite interactions still limit the universal effectiveness of therapeutic measures. Difficulties in countering the sophisticated invasive mechanisms displayed by many pathogenic organisms are evidenced by the resurgence of various diseases such as tuberculosis, as well as the appearance of numerous drug resistant strains of bacteria and viruses.
Among those pathogenic agents of major epidemiological concern, intracellular bacteria have proven to be particularly intractable in the face of therapeutic or prophylactic measures. Intracellular bacteria, including the genus Mycobacterium, complete all or part of their lifecycle within the cells of the infected host organism rather than extracellularly. Around the world, intracellular bacteria are responsible for untold suffering and millions of deaths each year. Tuberculosis is the leading cause of death from a single disease agent worldwide, with 8 million new cases and 2 million deaths annually. In addition, intracellular bacteria are responsible for millions of cases of leprosy. Other debilitating diseases transmitted by intracellular agents include cutaneous and visceral leishmaniasis, American trypanosomiasis (Chagas disease), listeriosis, toxoplasmosis, histoplasmosis, trachoma, psittacosis, Q-fever, legionellosis, anthrax and tularemia.
Currently it is believed that approximately one-third of the world's population is infected by Mycobacterium tuberculosis resulting in millions of cases of pulmonary tuberculosis annually. More specifically, human pulmonary tuberculosis primarily caused by M. tuberculosis is a major cause of death in developing countries. Mycobacterium tuberculosis is capable of surviving inside macrophages and monocytes, and therefore may produce a chronic intracellular infection. Mycobacterium tuberculosis is relatively successful in evading the normal defenses of the host organism by concealing itself within the cells primarily responsible for the detection of foreign elements and subsequent activation of the immune system. Moreover, many of the front-line chemotherapeutic agents used to treat tuberculosis have relatively low activity against intracellular organisms as compared to extracellular forms. These same pathogenic characteristics have heretofore limited the effectiveness of immunotherapeutic agents or immunogenic compositions against tubercular infections.
Recently, tuberculosis resistance to one or more drugs was reported in 36 of the 50 United States. In New York City, one-third of all cases tested was resistant to one or more major drugs. Though non-resistant tuberculosis can be cured with a long course of antibiotics, the outlook regarding drug resistant strains is bleak. Patients infected with strains resistant to two or more major antibiotics have a fatality rate of around 50%. Accordingly, safe and effective immunogenic compositions against multi-drug resistant strains of M. tuberculosis are sorely needed.
Initial infections of M. tuberculosis almost always occur through the inhalation of aerosolized particles as the pathogen can remain viable for weeks or months in moist or dry sputum. Although the primary site of the infection is in the lungs, the organism can also cause infection of nearly any organ including, but not limited to, the bones, spleen, kidney, meninges and skin. Depending on the virulence of the particular strain and the resistance of the host, the infection and corresponding damage to the tissue may be minor or extensive. In the case of humans, the initial infection is controlled in the majority of individuals exposed to virulent strains of the bacteria. The development of acquired immunity following the initial challenge reduces bacterial proliferation thereby allowing lesions to heal and leaving the subject largely asymptomatic.
When M. tuberculosis is not controlled by the infected subject it often results in the extensive degradation of lung tissue. In susceptible individuals, lesions are usually formed in the lung as the tubercle bacilli reproduce within alveolar or pulmonary macrophages. As the organisms multiply, they may spread through the lymphatic system to distal lymph nodes and through the blood stream to the lung apices, bone marrow, kidney and meninges surrounding the brain. Primarily as the result of cell-mediated hypersensitivity responses, characteristic granulomatous lesions or tubercles are produced in proportion to the severity of the infection. These lesions consist of epithelioid cells bordered by monocytes, lymphocytes and fibroblasts. In most instances a lesion or tubercle eventually becomes necrotic and undergoes caseation (conversion of affected tissues into a soft cheesy substance).
While M. tuberculosis is a significant pathogen, other species of the genus Mycobacterium also cause disease in animals including man and are clearly within the scope of the present invention. For example, M. bovis is closely related to M. tuberculosis and is responsible for tubercular infections in domestic animals such as cattle, pigs, sheep, horses, dogs and cats. Further, M. bovis may infect humans via the intestinal tract, typically from the ingestion of raw milk. The localized intestinal infection eventually spreads to the respiratory tract and is followed shortly by the classic symptoms of tuberculosis. Another important pathogenic species of the genus Mycobacterium is M. leprae that causes millions of cases of the ancient disease leprosy. Other species of this genus which cause disease in animals and man include M. kansasii, M. avium intracellulare, M. fortuitum, M. marinum, M. chelonei, and M. scrofulaceum. The pathogenic mycobacterial species frequently exhibit a high degree of homology in their respective DNA and corresponding protein sequences and some species, such as M. tuberculosis and M. bovis, are highly related.
Attempts to eradicate tuberculosis using immunogenic compositions was initiated in 1921 after Calmette and Guérin successfully attenuated a virulent strain of M. bovis at the Institut Pasteur in Lille, France. This attenuated M. bovis became known as the Bacille Calmette Guérin, or BCG for short. Nearly eighty years later, immunogenic compositions derived from BCG remain the only prophylactic therapy for tuberculosis currently in use. In fact, all BCG immunogenic compositions available today are derived from the original strain of M. bovis developed by Calmette and Guérin at the Institut Pasteur.
The World Health Organization considers the BCG immunogenic compositions an essential factor in reducing tuberculosis worldwide, especially in developing nations. In theory, the BCG immunogenic composition confers cell-mediated immunity against an attenuated mycobacterium that is immunologically related to M. tuberculosis. The resulting immune response should inhibit primary tuberculosis. Thus, if primary tuberculosis is inhibited, latent infections cannot occur and disease reactivation is avoided.
Current BCG immunogenic compositions are provided as lyphophilized cultures that are re-hydrated with sterile diluent immediately before administration. The BCG immunogenic composition is given at birth, in infancy, or in early childhood in countries that practice BCG vaccination, including developing and developed countries. Adult visitors to endemic regions who may have been exposed to high doses of infectious Mycobacteria may receive BCG as a prophylactic providing they are skin test non-reactive. Adverse reactions to the immunogenic composition are rare and are generally limited to skin ulcerations and lymphadenitis near the injection site. However, in spite of these rare adverse reactions, the BCG immunogenic composition has an unparalleled history of safety with over three billion doses having been administered worldwide since 1930.
However, the unparalleled safety of traditional BCG immunogenic compositions is coming under increased scrutiny and has created a paradox for healthcare practitioners. The population segments most susceptible to mycobacterial infections are the immunocompromised and immunosuppressed. Persons suffering from early or late-stage HIV infections are particularly susceptible to infection. Unfortunately, many persons in the early-stage of HIV infection are unaware of their immune status. It is likely that these individuals may voluntarily undergo immunization using a live attenuated immunogenic composition such as BCG without being forewarned of their unique risks. Moreover, other mildly immunocompromised or immunosuppressed individuals may also unwittingly undergo immunization with BCG hoping to avoid mycobacterial disease. Therefore, safer, more efficacious BCG and BCG-like immunogenic compositions are desirable.
Recently, significant attention has been focused on using transformed BCG strains to produce immunogenic compositions that express various cell-associated antigens. For example, C. K. Stover, et al. have reported a Lyme Disease immunogenic composition using a recombinant BCG (rBCG) that expresses the membrane associated lipoprotein OspA of Borrelia burgdorferi. Similarly, the same author has also produced a rBCG immunogenic composition expressing a pneumococcal surface protein (PsPA) of Streptococcus pneumoniae. (Stover C K, Bansal G P, Langerman S, and Hanson M S. 1994. Protective immunity elicited by rBCG immunogenic compositions. In: Brown F. (ed): Recombinant Vectors in Immunogenic composition Development. Dev Biol Stand. Dasel, Karger, Vol. 82:163-170)
U.S. Pat. No. 5,504,005 (the “'005” patent”) and U.S. Pat. No. 5,854,055 (the “'055 patent”) both issued to B. R. Bloom et al., disclose theoretical rBCG vectors expressing a wide range of cell associated fusion proteins from numerous species of microorganisms. The theoretical vectors described in these patents are either directed to cell-associated fusion proteins, as opposed to extracellular non-fusion protein antigens, and/or the rBCG is hypothetically expressing fusion proteins from distantly related species.
Furthermore, neither the '005 nor the '055 patent disclose animal model safety testing, immune response development or protective immunity in an animal system that closely emulates human disease. In addition, only theoretical rBCG vectors expressing M. tuberculosis fusion proteins are disclosed in the '005 and '055 patents; no actual immunogenic compositions are enabled. Those immunogenic composition models for M. tuberculosis that are disclosed are directed to cell-associated heat shock fusion proteins, not extracellular non-fusion proteins.
U.S. Pat. No. 5,830,475 (the “'475 patent”) also discloses theoretical mycobacterial immunogenic compositions used to express fusion proteins. The immunogenic compositions disclosed are intended to elicit immune responses in non-human animals for the purpose of producing antibodies thereto and not shown to prevent intracellular pathogen diseases in mammals. Moreover, the '475 patent does not disclose recombinant immunogenic compositions that use protein specific promoters to express extracellular non-fusion proteins.
U.S. Pat. No. 6,467,967 claims immunogenic compositions comprising a recombinant BCG having an extrachromosomal nucleic acid sequence comprising a gene encoding a M. tuberculosis 30 kDa major extracellular protein (also known as Antigen 85B), wherein the M. tuberculosis 30 kDa major extracellular protein is over-expressed and secreted. Moreover, U.S. Pat. No. 6,924,118 claims additional recombinant BCG that over-express other M. tuberculosis major extracellular proteins.
Therefore, there remains a need for recombinant intracellular pathogen immunogenic compositions that induce protective immune responses.
SUMMARY OF THE INVENTION
The present invention provides methods for producing recombinant immunogenic compositions for preventing or treating diseases of intracellular pathogens in humans and animals, immunogenic compositions against diseases of intracellular pathogens in humans and animals, and a new approach to producing immunogenic compositions against tuberculosis, leprosy, other mycobacterial diseases, and other intracellular pathogens.
The present invention provides recombinant Bacille Calmette Guérin (rBCG) immunogenic compositions that a) express host immunostimulatory molecules, host molecules that direct the immune response toward a TH1 type of immune response, or host molecules that direct the immune response away from a TH2 type of immune response; b) express a host immunostimulatory molecule, a host molecule that directs the immune response toward a TH1 type of immune response, or a host molecule that directs the immune response away from a TH2 type of immune response and express a pathogen major extracellular protein; or c) express Mycobacterium tuberculosis major extracellular proteins.
In one embodiment of the present invention, an immunogenic composition is provided comprising a recombinant BCG expressing at least one Mycobacteria major extracellular protein selected from the group consisting of 12 kDa protein, 14 kDa protein, 16 kDa protein, 23.5 kDa protein, 24 kDa protein, 30 kDa protein, 32A kDa protein, 32B kDa protein, 45 kDa protein, 58 kDa protein, 71 kDa protein, 80 kDa protein, and 110 KD protein, and combinations thereof, and at least one cytokine; wherein the Mycobacteria major extracellular proteins are over-expressed and secreted. In another embodiment, the at least one cytokine is selected from the group consisting of interferon gamma, interleukin-2, interleukin-12, interleukin-4 receptor and granulocyte macrophage colony stimulating factor, and combinations thereof.
In another embodiment, at least one of said at least one Mycobacteria major extracellular proteins are expressed on one or more extrachromosomal nucleic acid sequences. In another embodiment, at least one of said cytokines are expressed on one or more extrachromosomal nucleic acid sequences. In yet another embodiment, more than one of the at least one Mycobacteria major extracellular proteins are expressed on one or more extrachromosomal nucleic acid sequences. In another embodiment, each of said at least one Mycobacteria major extracellular proteins are expressed from different extrachromosomal nucleic acid sequences. In another embodiment, the at least one Mycobacteria major extracellular proteins and the at least one cytokine are expressed from different extrachromosomal nucleic acid sequences. In another embodiment, the at least one Mycobacteria major extracellular proteins and the at least one cytokine are expressed from the same extrachromosomal nucleic acid sequence.
In another embodiment of the present invention, at least one of the at least one Mycobacteria major extracellular proteins are integrated into the rBCG genome under the control of a strong promoter and over-expressed. In another embodiment, the at least one of the at least one cytokine are integrated into the rBCG genome under the control of a strong promoter and over-expressed. In another embodiment, the at least one Mycobacteria major extracellular proteins and the at least one cytokine are integrated into the rBCG genome under the control of a strong promoter and over-expressed.
In another embodiment, the at least one major extracellular proteins are non-fusion proteins. In another embodiment, the at least one major extracellular proteins are fusion proteins. In yet another embodiment, the at least one major extracellular proteins and at least one cytokine comprise a fusion protein.
In another embodiment of the present invention, the Mycobacteria major extracellular protein is from a species of Mycobacterium selected from the group consisting of Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium leprae, and Mycobacterium avium intracellulare. In another embodiment, the Mycobacteria major extracellular protein is the 30 kDa protein.
In another embodiment, the Mycobacteria major extracellular protein is over-expressed and secreted such that a protective immune response is induced in a host.
In one embodiment of the present invention, the immunogenic composition expresses the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins, the interleukin 4 receptor and interferon gamma.
In another embodiment of the present invention, the immunogenic composition expresses the 30 kDa Mycobacteria major extracellular protein, the interleukin 4 receptor and interferon gamma.
In another embodiment of the present invention, the immunogenic composition expresses the 30 kDa and 23.5 kDa Mycobacteria major extracellular proteins, the interleukin 4 receptor and interferon gamma.
In one embodiment of the present invention, an immunogenic composition is provided comprising a recombinant intracellular pathogen expressing at least one major extracellular protein of an intracellular pathogen and at least one cytokine wherein the major extracellular protein is over-expressed. In another embodiment, the at least one cytokine is selected from the group consisting of interferon gamma, interleukin-2, interleukin-12, interleukin-4 receptor and granulocyte macrophage colony stimulating factor, and combinations thereof.
In one embodiment of the present invention, an immunogenic composition is provided comprising a recombinant intracellular pathogen wherein the recombinant intracellular pathogen expresses at least one major extracellular protein of an intracellular pathogen and at least one cytokine wherein nucleic acid sequences encoding for the at least one major extracellular protein and at least one cytokine are incorporated into the intracellular pathogen's chromosome(s) under a strong promoter such that the major extracellular protein is over-expressed.
In another embodiment, the recombinant intracellular pathogen is of the same species as the intracellular pathogen against which the immunogenic composition is directed. In another embodiment, the recombinant intracellular pathogen is of a different species than the intracellular pathogen against which the immunogenic composition is directed.
In another embodiment of the present invention, the recombinant intracellular pathogen is selected from the group consisting of Mycobacterium bovis, M. tuberculosis, M. leprae, M. kansasii, M. avium, Mycobacterium sp., Legionella pneumophila, L. longbeachae, L. bozemanii, Legionella sp., Rickettsia rickettsii, Rickettsia typhi, Rickettsia sp., Ehrlichia chaffeensis, Ehrlichia phagocytophila geno group, Ehrlichia sp., Coxiella burnetii, Leishmania sp, Toxpolasma gondii, Trypanosoma cruzi, Chlamydia pneumoniae, Chlamydia sp, Listeria monocytogenes, Listeria sp, Histoplasma sp., Francisella tularensis, Brucella species, Yersinia pestis, Bacillus anthracis, and Salmonella typhi and adenovirus, vaccinia, avipox, adeno-associated virus, modified Vaccinia Strain Ankara, Semliki Forest virus, poxvirus, and herpes viruses.
In one embodiment of the present invention, an immunogenic composition is provided comprising a rBCG expressing the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins from at least one extrachromosomal nucleic acid sequence and further comprising an extrachromosomal nucleic acid sequence expressing a gene encoding for interferon gamma, wherein the Mycobacteria major extracellular proteins are over-expressed and secreted.
In one embodiment of the present invention, an immunogenic composition is provided comprising a rBCG wherein the rBCG expresses the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins and a gene encoding for interferon gamma, wherein nucleic acid sequences encoding for the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins and the interferon gamma are incorporated into the intracellular pathogen's chromosome(s) under a strong promoter such that the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins are over-expressed and secreted.
In one embodiment of the present invention, an immunogenic composition is provided comprising a rBCG comprising a first extrachromosomal nucleic acid sequence expressing a gene encoding the 30 kDa Mycobacteria major extracellular protein from an extrachromosomal nucleic acid sequence and a second extrachromosomal nucleic acid sequence expressing a gene encoding for interferon gamma, wherein the 30 kDa Mycobacteria major extracellular protein is over-expressed and secreted.
In another embodiment of the present invention, an immunogenic composition is provided comprising a rBCG wherein the rBCG expresses the 30 kDa Mycobacteria major extracellular protein and a gene encoding for interferon gamma, wherein nucleic acid sequences encoding for the 30 kDa Mycobacteria major extracellular protein and interferon gamma are incorporated into the intracellular pathogen's chromosome(s) under a strong promoter such that the 30 kDa Mycobacteria major extracellular protein is over-expressed and secreted.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 depicts intracellular expression of human interferon gamma by rBCG PhspX-hINFγ Tice and intracellular and extracellular expression of human interferon gamma by rBCG PLmpt64-hINFγ Tice according to the teachings of the present invention.
FIG. 2 depicts expression of recombinant human soluble IL-4 receptor (N-terminal 207 amino acids) by rBCG PLmpt64-hsIL4R Tice according to the teachings of the present invention.
FIG. 3 depicts expression and secretion of the M. tuberculosis 30 kDa major secretory protein and human interferon gamma by rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice according to the teachings of the present invention.
FIG. 4 depicts expression and secretion of the M. tuberculosis 30 kDa major secretory protein and human granulocyte-macrophage colony stimulating factor by rBCG30/hGM-CSF (pSMT3-MTB30; pGB9.2-hGM-CSF) Tice; expression and secretion of the M. tuberculosis 30 kDa major secretory protein and human interleukin 2 (IL-2) by rBCG30/hIL-2 (pSMT3-MTB30; pGB9.2-hIL-2) Tice; and expression and secretion of the M. tuberculosis 30 kDa major secretory protein and human interleukin 12 (IL-12) by rBCG30/hIL-12 (pSMT3-MTB30; pGB9.2-hIL-12) Tice according to the teachings of the present invention.
FIG. 5 depicts expression and secretion of the M. tuberculosis 30 kDa major secretory protein and guinea pig interferon gamma by rBCG30/gpINFγ (pSMT3-MTB30, pGB9.2-gpINFγ) according to the teachings of the present invention.
FIG. 6 depicts expression and secretion of M. tuberculosis 30 kDa major secretory protein and bovine interferon gamma by rBCG30/bINFγ (pSMT3-MTB30, pGB9.2-bINFγ) according to the teachings of the present invention.
FIG. 7 depicts expression and secretion of M. tuberculosis 30 kDa major secretory protein and human soluble IL-4 receptor by rBCG30/hsIL-4R (pSMT3-MTB30; pGB9.2-hsIL-4R) Tice) according to the teachings of the present invention.



DEFINITION OF TERMS
To facilitate an understanding of the following Detailed Description, Examples and appended claims it may be useful to refer to the following definitions. These definitions are non-limiting in nature and are supplied merely as a convenience to the reader.
Attenuated: As used herein, “attenuated” refers to microorganisms that are weakened and less vigorous and are capable of stimulating an immune response and creating immunity but not causing illness.
Auxotroph or auxotrophic: As used herein “auxotroph” refers to a microorganism having a specific nutritional requirement not required by the wild-type organism. In the absence of the required nutrient the auxotroph will not grow whereas the wild-type will thrive.
Gene: A “gene” as used herein refers to at least a portion of a genetic construct having a promoter and/or other regulatory sequences required for, or that modify the expression of, the genetic construct.
Genetic Construct: A “genetic construct” as used herein shall mean a nucleic acid sequence encoding for at least one major extracellular protein from at least one intracellular pathogen. In one embodiment of the present invention the genetic construct is extrachromosomal DNA.
Growth Regulatable: As used herein the term “growth regulatable” refers to an auxotrophic or metabolically impaired form of the present invention's immunogenic compositions. Growth is regulated by providing a nutrient essential for the auxotroph's growth at a concentration sufficient to induce growth.
Host: As used herein “host” refers to the recipient of the present immunogenic compositions. Exemplary hosts are mammals including, but not limited to, primates, rodents, cows, horses, dogs, cats, sheep, goats, pigs and elephants. In one embodiment of the present invention the host is a human. For the purposes of this disclosure host is synonymous with “vaccinee.”
Immunogen: As used herein the term “immunogen” shall mean any substrate that elicits an immune response in a host. Immunogens of the present invention include, but are not limited to major extracellular proteins, and their recombinant forms, derived from intracellular pathogens, such as, but not limited members of the genus Mycobacterium. 
Immunogenic Composition: An “immunogenic composition” as used herein comprises a recombinant vector, with or without an adjuvant, such as an intracellular pathogen, that expresses and/or secretes an immunogen in vivo and wherein the immunogen elicits an immune response in the host. The immunogenic compositions disclosed herein may be prototrophic, auxotrophic or metabolically impaired transformants. The immunogenic compositions of the present invention may or may not be immunoprotective or therapeutic. When the immunogenic compositions of the present invention prevent, ameliorate, palliate or eliminate disease from the host then the immunogenic composition may optionally be referred to as a vaccine. However, the term immunogenic composition is not intended to be limited to vaccines.
Major extracellular protein: As used herein, the term “major extracellular protein” is synonymous with “major secretory protein.” The present inventors have previously described and characterized the mycobacterial major extracellular proteins of the present invention. The descriptions and characterization of the present major extracellular proteins can be found, without limitation, in U.S. Pat. No. 6,599,510, issued Jul. 29, 2003, the entire contents of which are hereby incorporated by reference.
Metabolically impaired: As used herein “metabolically impaired” shall mean a recombinant expression vector, specifically a recombinant Bacille Calmette Guérin (rBCG), that has an altered or deleted gene that is essential for normal metabolism. In the present case, the metabolic alteration results in a rBCG that cannot divide in vivo unless the nutrient is provided to the rBCG (pre-loading) prior to the rBCG being administered in vivo.
Nucleic Acid Sequence: As used herein the term “nucleic acid sequence” shall mean any continuous sequence of nucleic acids.
Prototrophic: As used herein “prototrophic” refers to a rBCG that does not require any substance in its nutrition additional to those required by the wild-type.
Transformant: As used herein a “transformant” refers to a microorganism that has been transformed with at least one heterologous or homologous nucleic acid molecule encoding a polypeptide that is expressed and/or secreted. In one embodiment of the present invention the transformant is BCG.
DETAILED DESCRIPTION OF THE INVENTION
The present invention provides methods for producing recombinant immunogenic compositions for preventing or treating diseases of intracellular pathogens in humans and animals, immunogenic compositions against diseases of intracellular pathogens in humans and animals, and a new approach to producing immunogenic compositions against tuberculosis, leprosy, other mycobacterial diseases, and other intracellular pathogens.
The invention is useful for preventing infection caused by Mycobacterium tuberculosis, the agent of tuberculosis, infection by other pathogenic strains of Mycobacteria in humans and/or animals including Mycobacterium bovis, Mycobacterium avium intracellulare and Mycobacterium leprae; and infection by intracellular pathogens in general.
A safe and effective immunogenic composition against M. tuberculosis that is more potent than the currently available vaccine is sorely needed. The only currently available vaccine, Mycobacterium bovis strain Bacille Calmette Guérin (BCG), is of variable efficacy. Studies have failed to demonstrate significant protection. The potency of BCG has been estimated to be approximately 50%. Hence, an immunogenic composition that improved the potency of BCG by even a small amount could have a tremendous impact on disease incidence.
The present inventors have previously disclosed recombinant BCG immunogenic compositions (rBCG30) expressing and secreting the M. tuberculosis 30 kDa major secretory (extracellular) protein (Horwitz et al. Proc. Natl. Acad. Sci. USA 97:13853-13858, 2000, incorporated by reference herein for all it discloses regarding rBCG immunogenic compositions). These immunogenic compositions were more potent than BCG in the highly relevant guinea pig model. One of the immunogenic compositions, rBCG30 Tice I (pSMT3-MTB30) is used in the studies described below.
Recombinant BCG Immunogenic Compositions Co-Expressing Host Immunostimulatory Cytokines and M. tuberculosis Major Extracellular Proteins
Previously, it was known that the immunostimulatory cytokines interleukin 2 (IL-2), interleukin 12 (IL-12), granulocyte-macrophage colony stimulating factor (GM-CSF) and interferon gamma (INFγ) are associated with enhanced cell-mediated immunity against intracellular pathogens including Mycobacterium tuberculosis. For example, IL-12 enhances the resistance of mice to M. tuberculosis and mice lacking interferon gamma show increased susceptibility to M. tuberculosis. These immunostimulatory cytokines, when present in close proximity to the M. tuberculosis 30 kDa major secretory protein or other M. tuberculosis major extracellular proteins can enhance the protective immune response against tuberculosis induced by the extracellular proteins. Moreover, a recombinant BCG immunogenic composition co-expressing one of these immunostimulatory cytokines and the 30 kDa major secretory protein or other M. tuberculosis major extracellular proteins induces greater protective immunity than a recombinant BCG vaccine expressing the extracellular protein in the absence of the immunostimulatory protein.
Previous studies have shown that immunostimulatory cytokines, e.g. IL-2 and IL-12, can augment the efficiency of subunit vaccines (Baldwin et al. Infect. Immun. 66:2951-2959, 1998). However, none of the previously reported subunit vaccines have approached the efficacy of BCG.
Recombinant BCG expressing various murine and human cytokines have previously been reported (Murray et al. Proc. Natl. Acad. Sci. USA 93:934-939, 1996; O'Donnell et al. Infect. Immun. 62:2508-2514, 1994). However, such cytokine-producing recombinant BCG vaccines did not induce more potent protection in animal models than rBCG alone. The present inventors have determined that a recombinant BCG vaccine expressing only interferon gamma was not more potent than the parent BCG strain. Surprisingly, the recombinant BCG co-expressing interferon gamma and the 30 kDa M. tuberculosis major secretory protein was more potent than rBCG30, the strain only expressing the 30 kDa protein. Thus, when expressed by BCG, interferon gamma did not enhance the level of protective immunity conferred by BCG alone, but when expressed by rBCG30, it did enhance the level of protective immunity conferred by rBCG30 alone. Therefore, the present inventors have determined that the co-expression of a majorly abundant extracellular antigen from an intracellular pathogen and a cytokine will result in enhanced protective immunity.
The present invention provides recombinant BCG immunogenic compositions expressing cytokines including, but not limited to, interleukin-2 (IL-2), interleukin-10 (IL-10), interleukin-12 (IL-12), interleukin-4 (IL-4), interleukin-6 (IL-6), interleukin-7 (IL-7), interleukin-8 (IL-8), interleukin-15 (IL-15), interleukin-18 (IL-18), interferon gamma, tumor necrosis factor alpha (TNF-alpha), granulocyte macrophage colony stimulating factor (GM-CSF). The human cytokines IL-2, IL-12, and GM-CSF have been reported to be active in the guinea pig and active in non-glycosylated form. Additionally, rBCGs expressing cytokine receptors such as, but not limited to, the soluble IL-4 receptor (sIL4R) and the receptors for IL-2, IL-4, IL-7, IL-12, IFNs, GM-CSF or TNF-alpha are disclosed.
T lymphocytes are a major source of cytokines. These cells bear antigen specific receptors on their cell surface to allow recognition of foreign pathogens. They can also recognize normal tissue during episodes of autoimmune diseases. There are two main subsets of T lymphocytes, distinguished by the presence of cell surface molecules known as CD4 and CD8. T lymphocytes expressing CD4 are also known as helper T cells, and these are regarded as being the most prolific cytokine producers. This subset can be further subdivided into TH1 and TH2, and the cytokines they produce are known as TH1-type cytokines and TH2-type cytokines.
TH1-type cytokines tend to produce the proinflammatory responses responsible for killing intracellular parasites and for perpetuating autoimmune responses. Interferon gamma is the main TH1 cytokine. Excessive proinflammatory responses can lead to uncontrolled tissue damage, so there needs to be a mechanism to counteract this. The TH2-type cytokines include interleukins 4, 5, and 13, which are associated with the promotion of IgE and eosinophilic responses in atopy, and also interleukin-10, which has more of an anti-inflammatory response. In excess, TH2 responses will counteract the TH1 mediated microbicidal action. The optimal scenario would therefore seem to be that humans should produce a well balanced TH1 and TH2 response, suited to the immune challenge.
Many researchers regard allergy as a TH2 weighted imbalance, and recently immunologists have been investigating ways to redirect allergic TH2 responses in favor of TH1 responses to try to reduce the incidence of atopy. Some groups have been looking at using high dose exposure to allergen to drive up the TH1 response in established disease, and other groups have been studying the use of mycobacterial vaccines in an attempt to drive a stronger TH1 response in early life.
While a TH1 type of immune response is thought to promote immunoprotection against intracellular pathogens including M. tuberculosis, a TH2 type of immune response may be counterproductive. A shift towards a TH2 type response and cytokine profile has been found in tuberculosis patients. Based on the evidence that the soluble (extracellular) portion of the human interleukin 4 receptor can bind to interleukin 4 (IL-4) and the description of its molecular structure, a recombinant immunogenic composition expressing and secreting this soluble receptor fragment could competitively bind to circulating IL-4, significantly downmodulating the TH2 response to vaccine antigens, and shift the TH1 to TH2 ratio in favor of a TH1 response. Accordingly, to suppress a potential TH2 response to the antigens expressed by the immunogenic compositions of the present invention, a recombinant BCG expressing the IL-4 antagonist-soluble IL-4 Receptor (sIL4R) was produced.
The present invention encompasses several types of immunogenic compositions. One group of immunogenic compositions consists of recombinant strains of BCG Tice expressing and secreting various human or animal immunostimulatory molecules, host molecules that direct the immune response toward a TH1 type of immune response, or host molecules that direct the immune response away from a TH2 type of immune response. A second group of immunogenic compositions consists of recombinant strains of BCG Tice that express and secrete various human or animal immunostimulatory molecules, host molecules that direct the immune response toward a TH1 type of immune response, or host molecules that direct the immune response away from a TH2 type of immune response, and express a pathogen's major extracellular protein. Each immunogenic composition is administered intradermally or by another route, e.g. subcutaneously, intranasally, inhaled, or even orally to a mammalian host. The immunogenic compositions induce a strong cell-mediated immune response to pathogen antigens in the immunogenic composition. The immunogenic composition subsequently protects the mammalian hosts against infection with M. tuberculosis, Mycobacterium leprae, Mycobacterium avium, Mycobacterium avium intracellulare, other Mycobacteria, and other intracellular pathogens.
The current commercially available vaccine against tuberculosis is of limited efficacy against pulmonary tuberculosis. The immunogenic compositions of the present invention are more potent than the current commercially available vaccine in protecting against pulmonary tuberculosis and dissemination of bacteria to the spleen and other organs.
In one embodiment, the immunogenic compositions use extrachromosomal nucleic acids to express at least one recombinant immunogenic antigen gene and placing this gene(s) under the control of a strong promoter, preferably protein-specific promoter sequences. In another embodiment, the immunogenic composition comprises recombinant organisms expressing at least one recombinant immunogenic antigen gene from nucleic acid sequences integrated into the immunogenic composition's genomic DNA. In one embodiment, the promoter is not a heat shock promoter or a stress protein promoter. As a result, intracellular pathogen immunogenic compositions having surprisingly superior specificity and potency than existing subunit or attenuated intracellular pathogen immunogenic compositions are provided.
Promoters useful for regulating the expression of genes in the immunogenic compositions of the present invention include a variety of promoters well known to persons or ordinary skill in the art. Particularly useful are strong promoters. The term “strong promoter” refers to a promoter that allows expression of the protein at a level at least as great as the level of the endogenous protein and preferably several times greater. Non-limiting examples of suitable strong promoters include, the promoter for rrs (also known as rrnS, MTB000019 and the 16S ribosomal RNA gene) both in full-length and shortened forms; the promoter for fbpB, the 30 kDa mycolyl transferase; the promoter for glnA1, the glutamine synthetase GlnA1 protein; the promoter for pknH, also known as Rv1266c; and the promoter for heat shock protein 60 also known as groEL2. These promoters can be used to regulate expression of extrachromosomal nucleic acid sequences or nucleic acid sequences integrated into the recombinant organism's genome. In one embodiment, the promoter is not a heat shock promoter or a stress protein promoter.
The technology described herein for enhancing the immune response of the host is applicable to other vaccines against intracellular pathogens such as vaccines or immunogenic compositions against pathogens including, but not limited to, Francisella tularensis, Chlamydia species, Listeria monocytogenes, Brucella species, Yersinia pestis, Bacillus anthracis, Salmonella typhi, Leishmania species, Mycobacteria species, Trypanosoma cruzi, Toxoplasma gondii, Histoplasma capsulatum, Riskettsia species, Coxiella burnetii, Plasmodia species that cause malaria, and viruses, including, but not limited to, Human Immunodeficiency Virus (HIV).
Furthermore, the recombinant immunogenic antigens over-expressed by the immunogenic compositions disclosed herein can be from species including, but not limited to, Mycobacterium bovis, M. tuberculosis, M. leprae, M. kansasii, M. avium, Mycobacterium sp., Legionella pneumophila, L. longbeachae, L. bozemanii, Legionella sp., Rickettsia rickettsii, Rickettsia typhi, Rickettsia sp., Ehrlichia chaffeensis, Ehrlichia phagocytophila geno group, Ehrlichia sp., Coxiella burnetii, Leishmania sp, Toxpolasma gondii, Trypanosoma cruzi, Chlamydia pneumoniae, Chlamydia sp, Listeria monocytogenes, Listeria sp, Francisella tularensis, Bacillus anthracis, and Histoplasma sp.
Furthermore, the recombinant immunogenic composition can comprise a virus vector selected from the group consisting of adenovirus, vaccinia, avipox, adeno-associated virus, modified Vaccinia Strain Ankara, Semliki Forest virus, poxvirus, and herpes viruses.
Suitable recombinant immunogenic antigens include the major extracellular proteins of Mycobacteria species including, but not limited to, the 12 kDa protein, 14 kDa protein, 16 kDa protein, 23 kDa protein, 23.5 kDa protein, 30 kDa protein, 32A kDa protein, 32B kDa protein, 45 kDa protein, 58 kDa protein, 71 kDa protein, 80 kDa protein, and 110 kDa protein and combinations thereof.
Recombinant BCG Containing Single and Double Plasmid Constructs Expressing Various Cytokines or their Receptors
Recombinant BCG immunogenic compositions were constructed which express human interferon gamma as their only recombinant protein. Furthermore, rBCG expressing and secreting guinea pig interferon gamma was produced, to allow proof of principle testing in guinea pigs. Additionally, a recombinant BCG expressing bovine interferon gamma was constructed for use in a tuberculosis vaccine for cattle.
BCG immunogenic compositions 1, 2, and 3, described below, were generated by electroporating recombinant pNBV1 (Howard et al., Gene 166:181-182, 1995; Harth et al. Microbiol. 150:2143-2151, 2004, all of which are incorporated by reference herein for all they disclose regarding plasmids and methods for constructing recombinant compositions) constructs (cassettes containing promoter, leader, and coding regions were always inserted into the plasmid's multi-cloning site) into BCG Tice wild-type, while immunogenic compositions 4 through 9 (described below) were generated by electroporating recombinant pGB9.2 (Bachrach et al. Microbiol. 146:297-303, 2000, which is incorporated by reference herein for all it discloses regarding plasmids and methods for constructing recombinant compositions) constructs (cassettes containing promoter, leader, and coding regions were always inserted into the plasmid's multi-cloning site) into rBCG30 Tice (Horwitz et al., 2000). Single plasmid-containing recombinant clones were selected on 7H11 agar and in 7H9 liquid culture containing 50 μg/mL hygromycin, while double plasmid recombinant clones were selected likewise except that all media also contained 20 μg/mL kanamycin. All clones were screened for expression and, where applicable, secretion of their corresponding cytokine; the double plasmid containing clones were also screened for the secretion of recombinant M. tuberculosis 30 kDa major secretory protein. For the analyses of protein expression, culture filtrates were analyzed by reaction with protein specific antibodies on nitrocellulose membranes. Immunoblots were scanned and digitized to measure the amount of cytokine and 30 kDa major secretory protein each recombinant vaccine expresses.
1. Construct Expressing Human Interferon Gamma Intracellularly
rBCG PhspX-hINFγ Tice: This immunogenic composition contains a recombinant pNBV1 plasmid expressing the mature human cytokine from the promoter of the hspX gene (Rv2031c; Rv numbers based on M. tuberculosis H37Rv genome sequence) of M. tuberculosis. Since the cloned gene only contains the coding region of the mature protein (cDNA containing plasmid obtained from ATCC, Manassas, Va.), expression of interferon gamma is limited to the intracellular milieu and occurs during late log phase when this promoter is induced (FIG. 1; immunoblot with specific polyvalent antibodies).
2. Construct Expressing and Secreting Human Interferon Gamma
rBCG PLmpt64-hINFγ Tice: This immunogenic composition contains a recombinant pNBV1 plasmid expressing the mature human cytokine from the promoter (P) of the 23.5 kDa protein gene (mpt64 or Rv1980c) of M. tuberculosis. The presence of the 23.5 kDa protein's leader sequence (L) allows for the constitutive secretion of mature interferon gamma (FIG. 1).
3. Construct Expressing and Secreting the Human Soluble Interleukin 4 Receptor Fragment (hsIL-4R)
rBCG PLmpt64-hsIL-4R Tice: This immunogenic composition contains a recombinant pNBV1 plasmid expressing the human soluble interleukin 4 receptor fragment (synthetic DNA fragment, GenScript Corp., Piscataway, N.J.) from the promoter of the 23.5 kDa protein gene (mpt64 or Rv1980c) of M. tuberculosis. The presence of the 23.5 kDa protein's leader sequence allows for the constitutive secretion of unglycosylated receptor fragment (the receptor fragment contains several potential N glycosylation sites which are utilized in eukaryotic cells, leading to receptor fragments of varying sizes which are approximately 10 kDa larger than the unglycosylated fragment). Several of the analyzed recombinant BCG clones were positive (FIG. 2; immunoblot with specific antibodies).
4. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Human Interferon Gamma (hIFNγ) on a Second Plasmid
rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice: This immunogenic composition is based on the rBCG30 Tice strain (Horwitz et al., 2000) which was modified by the in-troduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the mature human interferon gamma downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of interferon gamma, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 (Herrmann et al., EMBO J. 15:3547-3554, 1996; Anderson et al., J. Mol. Biol. 307:671-681, 2001, both of which are incorporated by reference herein for all they disclose regarding plasmids and methods for constructing recombinant compositions) and human interferon gamma from pGB9.2. Several recombinant clones were obtained and analyzed by immunoblots. The expression pattern of the clones is shown in FIG. 3.
5. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Guinea Pig Interferon Gamma on a Second Plasmid
rBCG30/gpINFγ (pSMT3-MTB30; pGB9.2-gpINFγ) Tice: This immunogenic composition is based on the rBCG30 Tice strain which was modified by the introduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the mature guinea pig interferon gamma downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of interferon gamma, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 and guinea pig interferon gamma from pGB9.2. Several recombinant clones were obtained and analyzed by immunoblots using anti-human interferon gamma immunoglobulins which cross-react with guinea pig interferon gamma. Human and guinea pig interferon gamma share 66% identity and 88% similarity, including the most important domain for species specific receptor binding (Walter et al., Nature 376:230-235, 1995): amino acids 129-132, human=KRKR, guinea pig=KRRR. The expression pattern of the clones is shown in FIG. 5.
FIG. 5 depicts culture filtrates from rBCG Tice clones grown in medium containing 50 μg/mL hygromycin and 20 μg/mL kanamycin and probed for the expression and secretion of the M. tuberculosis 30 kDa protein and the mature guinea pig interferon gamma by immunoblotting on a nitrocellulose membrane with protein specific antibodies. The antigen-antibody complexes were visualized by reaction with secondary antibodies coupled to horseradish peroxidase (HRPO), incubation with HRPO substrate, and exposure to X-ray film. The recombinant clones express the unglycosylated guinea pig interferon gamma and, compared with the BCG wild-type control, over-express the M. tuberculosis 30 kDa protein.
6. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Bovine Interferon Gamma on a Second Plasmid
rBCG30/bINFγ (pSMT3-MTB30; pGB9.2-bINFγ) Tice: This immunogenic composition is also based on the rBCG30 Tice strain. The recombinant plasmid pGB9.2, containing the coding region of the mature bovine interferon gamma is introduced downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of interferon gamma, by electroporation into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 and bovine interferon gamma from pGB9.2.
FIG. 6 depicts culture filtrates from rBCG Tice clones grown in medium containing 50 μg/mL hygromycin and 20 μg/mL kanamycin and probed for the expression and secretion of the M. tuberculosis 30 kDa protein and the mature bovine interferon gamma by immunoblotting on a nitrocellulose membrane with protein specific antibodies. The antigen-antibody complexes were visualized by reaction with secondary antibodies coupled to HRPO, incubation with HRPO substrate, and exposure to X-ray film. The recombinant clones express the unglycosylated bovine interferon gamma and, compared with the BCG wild-type control, over-express the M. tuberculosis 30 kDa protein.
7. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Human Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) on a Second Plasmid
rBCG30/hGM-CSF (pSMT3-MTB30; pGB9.2-hGM-CSF) Tice: This vaccine is based on the rBCG30 Tice strain which was modified by the introduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the mature human granulocyte-macrophage colony stimulating factor (cDNA clone obtained from ATCC) downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of granulocyte-macrophage colony stimulating factor, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 and human granulocyte-macrophage colony stimulating factor from pGB9.2. Several recombinant clones were obtained and analyzed by immunoblots. The expression pattern of the clones is shown in FIG. 4.
8. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Human Interleukin 2 (IL-2) on a Second Plasmid
rBCG30/hIL-2 (pSMT3-MTB30; pGB9.2-hIL-2 Tice: This immunogenic composition is based on the rBCG30 Tice strain which was modified by the introduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the mature human interleukin 2 downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of interleukin 2, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa protein from pSMT3 and human interleukin 2 from pGB9.2. Several recombinant clones were obtained and analyzed by immunoblots. The expression pattern of the clones is shown in FIG. 4.
9. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Human Interleukin 12 (IL-12) on a Second Plasmid
rBCG30/hIL-12 (pSMT3-MTB30; pGB9.2-hIL-12) Tice: This immunogenic composition is based on the rBCG30 Tice strain which was modified by the introduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the mature human interleukin 12 downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of interleukin 12, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 and human interleukin 12 from pGB9.2. Interleukin 12 is a heterodimer encoded on two separate genes whose gene products have to be assembled stoichometrically to confer bioactivity to the protein complex. In recombinant form, it is frequently expressed as p70 by fusing the p35 to the carboxyl terminus of p40 and separating the two protein domains by a flexible amino acid linker comprising a string of six glycines and one serine. Several recombinant clones were obtained and analyzed by immunoblots. The expression pattern of the clones is shown in FIG. 4.
10. Construct Expressing and Secreting the M. Tuberculosis 30 kDa Major Secretory Protein on One Plasmid and Human Soluble Interleukin 4 Receptor on a Second Plasmid
rBCG30/hsIL-4R (pSMT3-MTB30; pGB9.2-hsIL-4R) Tice: This immunogenic composition is based on the rBCG30 Tice strain which was modified by the introduction of a second compatible, recombinant plasmid pGB9.2. The recombinant pGB9.2, containing the coding region of the human soluble interleukin 4 receptor (soluble domain of the human IL-4 receptor) downstream of the promoter and leader peptide sequences of the M. tuberculosis 23.5 kDa protein gene (mpt64; Rv1980c) to allow expression and secretion of human soluble interleukin 4 receptor, was electroporated into rBCG30 Tice bacteria to obtain a recombinant strain which secretes the 30 kDa major secretory protein from pSMT3 and human soluble interleukin 4 receptor from pGB9.2. Several recombinant clones were obtained and analyzed by immunoblots. The expression pattern of two clones is shown in FIG. 7.
Growth-Regulatable Immunogenic Compositions
The present invention provides recombinant BCG immunogenic compositions that a) are growth-limited and/or growth-regulatable and b) are growth-limited and/or growth-regulatable and secrete a M. tuberculosis major extracellular protein, in one non-limiting example, the M. tuberculosis 30 kDa major secretory protein.
Immunogenic compositions comprising a rBCG wherein the rBCG is metabolically impaired and wherein a siderophore and iron are used to regulate growth of the metabolically impaired strain are also provided. This rBCG has been rendered siderophore-dependent and iron-loadable. It can be grown in vitro in the presence of iron and a siderophore such as, but not limited to, mycobactin J or exochelin, and thereby loaded with iron. Subsequently, when administered to the host, it can use the stored iron to multiply for several generations. As some growth of a live vaccine in the host is necessary to induce a strong protective immune response, the capacity of the rBCG to divide several times in the host allows the generation of a strong protective immune response. At the same time, the limited capacity of the rBCG to multiply in the host, as a result of its inability to acquire iron in the host, renders it unable to cause disseminated disease in the immunocompromised host and therefore safer than BCG. The rBCG(mbtB)30 immunogenic composition, while safer than BCG because it can not disseminate in an immunocompromised host, is also more potent than BCG.
Additionally, growth regulatable recombinant BCG immunogenic compositions which can not grow more than a few generations in the host without a nutritional supplement are provided. These compositions are designed to be safer than BCG, because unlike BCG, such immunogenic composition can not disseminate in the host in the absence of the nutritional supplement. Growth-regulatable auxotrophic recombinant BCG immunogenic compositions are provided that are dependent upon small amounts of the vitamin pantothenate. The rBCG can be administered to the host without providing a nutrient supplement to the host, in which case it can only undergo a limited number of divisions using stored nutrient but a sufficient number of divisions to generate a potent protective immune response. Alternatively, the vaccine can be administered to the host and the host provided a large amount of the nutrient, which can be given safely and inexpensively to mammals in large quantities, facilitating its acquisition by the live recombinant immunogenic composition in the host. In one example, the nutrient is the vitamin pantothenate. Under such circumstances, the immunogenic composition can persist longer in the host and induce a stronger protective immune response. Should the vaccine begin to disseminate and cause illness the nutrient supplement can be readily terminated, thereby stopping growth of the organism in the host and preventing serious disease. The amount of pantothenate normally present in the host eating a normal diet is orders of magnitude less than that needed to provide sufficient pantothenate for the growth of the rBCG. One version of the novel live recombinant pantothenate-dependent BCG immunogenic composition over-expresses the M. tuberculosis 30 kDa major secretory protein.
DETAILED DESCRIPTION OF THE INVENTION
Recombinant attenuated growth-regulatable immunogenic compositions are further disclosed in co-pending U.S. Provisional Patent Application No. 60/744,552 filed Apr. 10, 2006 and International Patent Application No. PCT/US2007/066348 filed on even date herewith, the contents of both of which are incorporated herein in their entirety.
Example 1
Cell-Mediated, Humoral, and Protective Immunity Studies
The studies of the efficacy of the immunogenic compositions of the present invention utilized guinea pigs because the guinea pig model is especially relevant to human tuberculosis clinically, immunologically, and pathologically. In contrast to the mouse and rat, but like the human, the guinea pig a) is susceptible to low doses of aerosolized M. tuberculosis; b) exhibits strong cutaneous delayed-type hypersensitivity (DTH) to tuberculin; and c) displays Langhans giant cells and caseation in pulmonary lesions. However, whereas only about 10% of immunocompetent humans who are infected with M. tuberculosis develop active disease over their lifetime (half early after exposure and half after a period of latency), infected guinea pigs always develop early active disease. While guinea pigs differ from humans in this respect, the consistency with which they develop active disease after infection with M. tuberculosis is an advantage in trials of vaccine efficacy.
Aliquots were removed from logarithmically growing wild-type or recombinant BCG cultures and the bacteria were pelleted by centrifugation at 3,500×g for 15 min. The bacteria were then washed with 1× phosphate buffered saline (1×PBS, 50 mM sodium phosphate pH 7, 150 mM sodium chloride) and resuspended at a final concentration of 1×104 or 1×107 colony-forming units per ml in 1×PBS. The immunization inoculum contained 103 or 106 viable wild-type or recombinant BCG bacteria in a total volume of 100 μl.
Experiment 1
1. Immunization of Animals
Specific-pathogen free 250-300 g outbred male Hartley strain guinea pigs from Charles River Breeding Laboratories, in groups of 15 or 21, were sham-immunized by intradermal administration of buffer (15 animals total) or immunized intradermally with 103 or 106 CFU of one of the following strains of BCG (21 animals/group):

    
    
        Group A: Sham-immunized (Sham)
        Group B: 103 BCG Tice Parental Control (BCG)
        Group C: 103 rBCG30 Tice I (pSMT3-MTB30) (rBCG30)
        Group D: 103 rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice (rBCG30/hINFγ)
        Group E: 106 rBCG(mbtB) Tice grown in a low mycobactin J concentration (rBCG(mbtB) Lo Fe)
        Group F: 106 rBCG(mbtB) Tice grown in a high mycobactin J concentration (rBCG(mbtB) Hi Fe)
        Group G: 106 rBCG(mbtB)30 II (pNBV1-30) Tice grown in a low mycobactin J concentration (rBCG(mbtB)30 Lo Fe)
        Group H: 106 rBCG(mbtB)30 II (pNBV1-30) Tice grown in a high mycobactin J concentration (rBCG(mbtB)30 Hi Fe)
    
    


2. Cutaneous Delayed-Type Hypersensitivity (DTH) to Purified Recombinant M. tuberculosis 30 kDa Major Secretory Protein (r30)
Ten weeks after immunization, 6 guinea pigs in each group were shaved over the back and injected intradermally with 10 μg of purified recombinant M. tuberculosis 30 kDa major secretory protein (r30) in 100 μl phosphate buffered saline. After 24 h, the diameter of erythema and induration was measured. A separate group of animals from the one used in the challenge studies was used for skin-testing to eliminate the possibility that the skin-test itself might influence the outcome. The results are summarized in Table 1.







TABLE 1







Cutaneous DTH - Experiment 1













Test
Erythema
Induration


Group
Strain
Antigen
(mm ± SE)
(mm ± SE)





A
Sham
r30
2.7 ± 1.3
0 ± 0


B
BCG
r30
5.8 ± 1.4
0 ± 0


C
rBCG30
r30
11.8 ± 2.6 
5.6 ± 3.5


D
rBCG30/hINFγ
r30
6.3 ± 1.4
0 ± 0


E
rBCG(mbtB) Lo Fe
r30
2.0 ± 1.0
0 ± 0


F
rBCG(mbtB) Hi Fe
r30
3.0 ± 1.6
0 ± 0


G
rBCG(mbtB)30 Lo Fe
r30
14.4 ± 2.3 
3.6 ± 3.6


H
rBCG(mbtB)30 Hi Fe
r30
10.3 ± 1.3 
4.7 ± 2.1









These results showed that sham-immunized animals (Group A) and animals immunized with the parental BCG Tice strain (Group B) had no induration upon testing with r30. Similarly, animals immunized with a growth-restricted vaccine [rBCG(mbtB)] not over-expressing the 30 kDa protein had no induration upon testing with r30, whether the vaccine was grown under high mycobactin J (Group F) or low mycobactin J (Group E) conditions. In contrast, animals immunized with a recombinant BCG strain over-expressing r30 (Group C) had induration in response to r30. Similarly, animals immunized with the growth-restricted strain rBCG(mbtB)30, whether grown under high mycobactin J (Group H) or low mycobactin J (Group G) conditions, showed induration upon testing with r30. Interestingly, the recombinant BCG expressing both r30 and human interferon gamma did not show induration upon testing with r30, although it did display some erythema.
3. Protective Immunity to Aerosol Challenge.
Ten weeks after immunization, the remaining animals in Groups A-H were challenged with an aerosol generated from a 10 ml single-cell suspension containing 7.5×104 colony-forming units (CFU) of M. tuberculosis. Prior to challenge, the challenge strain, M. tuberculosis Erdman strain (ATCC 35801), had been passaged through outbred guinea pigs to maintain virulence, cultured on 7H11 agar, subjected to gentle sonication to obtain a single cell suspension, and frozen at −70° C. This aerosol dose delivered  ̃10 live bacilli to the lungs of each animal. The airborne route of infection was used because this is the natural route of infection for pulmonary tuberculosis. A relatively large dose was used so as to induce measurable clinical illness in 100% of control animals within a relatively short time frame (10 weeks). Afterwards, guinea pigs were individually housed in stainless steel cages contained within a laminar flow biohazard safety enclosure and allowed free access to standard laboratory chow and water. The animals were observed for illness and weighed weekly for 10 weeks and then euthanized. The right lung and spleen of each animal was removed and cultured for CFU of M. tuberculosis on Middlebrook 7H11 agar for two weeks at 37° C., 5% CO2-95% air atmosphere. The results of the assay for CFU in the lungs and spleens are shown in Table 2.







TABLE 2







CFU in Lungs and Spleens - Experiment 1












Lung
Spleen




(Mean Log
(Mean Log


Group
Strain
CFU ± SE)
CFU ± SE)





A
Sham
6.03 ± 0.10
5.57 ± 0.17


B
BCG
4.83 ± 0.12
4.20 ± 0.21


C
rBCG30
4.04 ± 0.21
2.87 ± 0.23


D
rBCG30/hINFγ
3.57 ± 0.27
2.38 ± 0.30


E
rBCG(mbtB) Lo Fe
4.49 ± 0.19
3.69 ± 0.33


F
rBCG(mbtB) Hi Fe
4.68 ± 0.25
4.42 ± 0.24


G
rBCG(mbtB)30 Lo Fe
4.40 ± 0.28
3.17 ± 0.39


H
rBCG(mbtB)30 Hi Fe
4.42 ± 0.25
2.93 ± 0.31









These results showed that animals immunized with BCG or any recombinant BCG strain had much lower CFU in the lungs and spleens than the sham immunized animals.
Animals immunized with the recombinant BCG strain secreting both the M. tuberculosis 30 kDa major secretory protein and human interferon gamma (rBCG30/hINFγ) had markedly fewer CFU in the lung and spleen than even rBCG30; animals immunized with rBCG30/hINFγ had 0.5 logs fewer CFU in the lung and spleen than rBCG30. Moreover, in the case of animals immunized with rBCG30/hINFγ, 50% of the animals had no detectable CFU in their spleens and thus were scored at the limit of detection of 1.56 logs. In contrast, in the case of rBCG30 immunized animals, only 14% of the animals had no detectable CFU in the spleen. Compared with animals immunized with BCG, animals immunized with rBCG30/hINFγ had 1.3 logs fewer CFU in the lung and 1.8 logs fewer CFU in the spleen.
Surprisingly, animals immunized with the growth-restricted strain rBCG(mbtB) had fewer CFU in the lung than BCG, whether grown in high or low concentrations of mycobactin J before immunization. Remarkably, animals immunized with the growth-restricted recombinant BCG strain over-expressing the M. tuberculosis 30 kDa major secretory protein [rBCG(mbtB)30], whether grown in the presence of high or low amounts of mycobactin J before immunization, showed an impressive reduction in CFU in animal organs compared with BCG. Animals immunized with rBCG(mbtB)30, whether grown in the presence of high or low amounts of iron before immunization, had 0.4 logs fewer CFU in the lungs than BCG-immunized animals; animals immunized with rBCG(mbtB)30 grown in a low amount of mycobactin J before immunization had 1.0 log fewer CFU in the spleen and animals immunized with rBCG(mbtB)30 grown in a high amount of mycobactin J before immunization had 1.3 log fewer CFU in the spleen than BCG-immunized animals. Remarkably, the reduction in spleen CFUs in animals immunized with rBCG(mbtB)30 grown in a high amount of mycobactin J before immunization was comparable to that observed with rBCG30, which is not growth-restricted.
Experiment 2
1. Immunization of Animals
Specific-pathogen free 250-300 g outbred male Hartley strain guinea pigs from Charles River Breeding Laboratories, in groups of 6, were sham-immunized by intradermal administration of buffer or immunized intradermally with 103 or 106 CFU of one of the following strains:

    
    
        Group A: Sham-immunized (Sham)
        Group B: 103 BCG Tice Parental Control (BCG)
        Group C: 103 rBCG30 Tice I (pSMT3-MTB30) (rBCG30)
        Group D: 103 rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice (rBCG30/hINFγ)
        Group E: 103 rBCG30/hGM-CSF (pSMT3-MTB30; pGB9.2-hGM-CSF) Tice (rBCG30/hGM-CSF)
        Group F: 103 rBCG30/hIL-2 (pSMT3-MTB30; pGB9.2-hIL-2) Tice (rBCG30/hIL-2)
        Group G: 103 rBCG30/hIL-12 (pSMT3-MTB30; pGB9.2-hIL-12) Tice (rBCG30/hIL-12)
        Group H: 103 rBCG(panCD)30 (pNBV1-30) Tice (103 rBCG(panCD)30)
        Group I: 106 rBCG(panCD)30 (pNBV1-30) Tice (106 rBCG(panCD)30)
        Group J: 103 rBCG(panCD)30 (pNBV1-30) Tice—Animals fed diet high in pantothenate (103 rBCG(panCD)30-diet)
        Group K: 106 rBCG(panCD)30 (pNBV1-30) Tice—Animals fed diet high in pantothenate (106 rBCG(panCD)30-diet)
    
    


2. Cutaneous Delayed-Type Hypersensitivity (DTH) to Purified Recombinant M. tuberculosis 30 kDa Major Secretory Protein (r30)
Five weeks after immunization, 6 guinea pigs in each group were shaved over the back and injected intradermally with 10 μg of purified recombinant M. tuberculosis 30 kDa major secretory protein (r30) in 100 μl phosphate buffered saline. After 24 h, the diameter of erythema and induration was measured. A separate group of animals from the one used in the challenge studies was used for skin-testing to eliminate the possibility that the skin-test itself might influence the outcome. The results are summarized in Table 3.







TABLE 3







Cutaneous DTH - Experiment 2













Test
Erythema
Induration


Group
Strain
Antigen
(mm ± SE)
(mm ± SE)





A
Sham
r30
0 ± 0
0 ± 0


B
BCG
r30
0 ± 0
0 ± 0


C
rBCG30
r30
16.5 ± 1.6 
14.0 ± 3.2 


D
rBCG30/hINFγ
r30
6.8 ± 1.5
1.2 ± 1.2


E
rBCG30/hGM-CSF
r30
6.3 ± 1.6
3.0 ± 1.9


F
rBCG30/hIL-2
r30
13.5 ± 3.2 
13.5 ± 3.2 


G
rBCG30/hIL-12
r30
5.7 ± 1.9
4.3 ± 2.1


H
103 rBCG(panCD)30
r30
4.3 ± 1.6
0 ± 0


I
106 rBCG(panCD)30
r30
16.1 ± 1.1 
16.3 ± 1.0 


J
103 rBCG(panCD)30-diet
r30
5.8 ± 1.4
0 ± 0


K
106 rBCG(panCD)30-diet
r30
15.2 ± 0.8 
13.0 ± 2.7 









These results showed that sham-immunized animals (Group A) and animals immunized with the parental BCG Tice strain (Group B) had no erythema or induration upon testing with r30. In contrast, animals immunized with rBCG30 or recombinant BCG strains producing both r30 and a human cytokine, displayed erythema and induration in response to skin-testing. Animals immunized with a high dose of rBCG(panCD)30 requiring pantothenate for growth displayed marked erythema and induration comparable to that of rBCG30. Animals immunized with a low dose of rBCG(panCD)30 requiring pantothenate for growth displayed some erythema but no induration. Interestingly, whether the animals were fed a high or standard amount of pantothenate in their diet did not significantly influence the amount of induration at a given dose of vaccine. Thus, animals immunized with the new strains secreting the 30 kDa major secretory protein in combination with a human immunostimulatory cytokine developed a cell-mediated immune response to r30. In addition, animals immunized with a high vaccine dose of rBCG(panCD)30 developed a cell-mediated immune response to r30.
3. Antibody to Purified Recombinant M. Tuberculosis 30 kDa Major Protein (r30)
Blood was obtained from the animals described above immediately after they were euthanized, and the serum was assayed for antibody titer to r30 by ELISA, using Costar (Corning, N.Y.) 96-well EIA/RIA High Binding Plates, r30 at 1 μg/well, guinea pig serum diluted 1:64 to 1:1,024,000, alkaline phosphatase-conjugated goat anti-guinea pig IgG (Sigma, St. Louis, Mo.) at a dilution of 1:1,000, and an Alkaline Phosphatase Substrate Kit (BioRad, Hercules, Calif.). Titers less than 1:64 were scored as 1:32 for statistical purposes. The results are summarized in Table 4.







TABLE 4







Antibody to r30 - Experiment 2












Test
Geometric


Group
Strain
Antigen
Mean Titer













A
Sham
r30
84


B
BCG
r30
127


C
rBCG30
r30
1154


D
rBCG30/hINFγ
r30
48


E
rBCG30/hGM-CSF
r30
73


F
rBCG30/hIL-2
r30
49


G
rBCG30/hIL-12
r30
37


H
103 rBCG(panCD)30
r30
32


I
106 rBCG(panCD)30
r30
110


J
103 rBCG(panCD)30-diet
r30
37


K
106 rBCG(panCD)30-diet
r30
574









These results showed that sham-immunized animals (Group A) and animals immunized with the parental BCG Tice strain (Group B) had relatively low antibody titers to r30. In contrast, animals immunized with rBCG30 had a relatively high titer. Interestingly, animals immunized with recombinant BCG expressing r30 and a cytokine had low titers, indicating that the presence of the cytokine resulted in a diminished antibody response.
Animals immunized with a low dose of rBCG(panCD)30 requiring pantothenate for growth had low titers with or without dietary supplementation with pantothenate. Animals immunized with a high dose of the mutant form of rBCG30 requiring pantothenate for growth had a slightly higher antibody titer in the absence of pantothenate dietary supplementation than animals immunized with a low dose of this strain. However, the antibody titer was markedly increased in animals immunized with a high dose of rBCG(panCD)30 requiring pantothenate for growth who were fed a diet rich in pantothenate. The higher titer is consistent with increased survival of the mutant strain in vivo in animals fed pantothenate.
Experiment 3
1. Immunization of Animals
Specific-pathogen free 250-300 g outbred male Hartley strain guinea pigs from Charles River Breeding Laboratories, in groups of 15 or 21, were sham-immunized by intradermal administration of buffer (15 animals total) or immunized intradermally with 103 or 106 CFU of one of the following strains (21 animals/group):

    
    
        Group A: Sham-immunized (Sham)
        Group B: 103 BCG Tice Parental Control (BCG)
        Group C: 103 rBCG30 Tice I (pSMT3-MTB30) (rBCG30)
        Group D: 103 rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice (rBCG30/hINFγ)
        Group E: 103 rBCG/hINFγ (pGB9.2-hINFγ) Tice (rBCG/hINFγ)
        Group F: 103 BCG Tice Parental Control—Grown in medium containing Tyloxapol (103 BCG-Tyl)
        Group G: 103 rBCG(mbtB) Tice—Grown in medium containing a high mycobactin J concentration (103 rBCG(mbtB) Hi Fe)
        Group H: 103 rBCG(mbtB)30 II (pNBV1-30) Tice—Grown in medium containing a high mycobactin J concentration (103 rBCG(mbtB)30 Hi Fe)
        Group I: 106 BCG Tice Parental Control—Grown in medium containing Tyloxapol (106 BCG-Tyl)
        Group J: 106 rBCG(mbtB) Tice—Grown in medium containing a high mycobactin J concentration (106 rBCG(mbtB) Hi Fe).
        Group K: 106 rBCG(mbtB)30 II (pNBV1-30) Tice—Grown in medium containing a high mycobactin J concentration (106 rBCG(mbtB)30 Hi Fe)
    
    


In addition, specific-pathogen free 250-300 g outbred male Hartley strain guinea pigs from Charles River Breeding Laboratories, in groups of 9 (group L) or 12 (groups M, N, and O) were sham-immunized by intradermal administration of buffer (9 animals total) or immunized intradermally with 103 CFU of one of the following strains (12 animals/group):

    
    
        Group L: Sham-immunized. Abbreviate Sham.
        Group M: 103 BCG Tice Parental Control. Abbreviate BCG.
        Group N: 103 rBCG30 Tice I (pSMT3-MTB30). Abbreviate rBCG30.
        Group O: 103 rBCG30/hINFγ (pSMT3-MTB30; pGB9.2-hINFγ) Tice. Abbreviate rBCG30/hINFγ.
    
    


2. Cutaneous Delayed-Type Hypersensitivity (DTH) to Purified Recombinant M. Tuberculosis 30 kDa Major Secretory Protein (r30)
Ten weeks after immunization, 6 guinea pigs in each group were shaved over the back and injected intradermally with 10 μg of purified recombinant M. tuberculosis 30 kDa major secretory protein (r30) in 100 μl phosphate buffered saline. After 24 h, the diameter of erythema and induration was measured. A separate group of animals from the one used in the challenge studies—see below—was used for skin-testing to eliminate the possibility that the skin-test itself might influence the outcome. The results are summarized in Table 5.







TABLE 5







Cutaneous DTH - Experiment 3













Test
Erythema
Induration


Group
Strain
Antigen
(mm ± SE)
(mm ± SE)





A
Sham
r30
2.1 ± 1.0
0 ± 0


B
BCG
r30
5.0 ± 1.3
0 ± 0


C
rBCG30
r30
17.8 ± 2.1 
16.5 ± 3.4 


D
rBCG30/hINFγ
r30
4.3 ± 1.6
0 ± 0


E
rBCG/hINFγ
r30
6.6 ± 2.5
0 ± 0


F
103 BCG-Tyl.
r30
7.3 ± 1.6
1.7 ± 1.7


G
103rBCG(mbtB) Hi Fe
r30
1.5 ± 1.0
0 ± 0


H
103rBCG(mbtB)30 Hi Fe
r30
8.8 ± 2.2
0 ± 0


I
106BCG-Tyl
r30
4.0 ± 2.2
0 ± 0


J
106rBCG(mbtB) Hi Fe
r30
0 ± 0
0 ± 0


K
106rBCG(mbtB)30 Hi Fe
r30
15.0 ± 0.8 
10.3 ± 3.3 









These results showed that sham-immunized animals (Group A) and animals immunized with the parental BCG Tice strain (Groups B, F, and 1) had little or no induration upon testing with r30 whether the strain was grown in medium containing tyloxapol or not and whether or not a high dose was administered. Tyloxapol was used to allow solubilization of mycobactin J with the rBCG(mbtB) and rBCG(mbtB)30 vaccines. It was also added to BCG in some of these experiments as a control. Tyloxapol had no influence on protection.
Similarly, animals immunized with a growth-restricted vaccine [rBCG(mbtB)] not over-expressing the 30 kDa protein had no induration upon testing with r30, whether a low dose (Group G) or high dose (Group J) of the vaccine was administered. In contrast, animals immunized with a recombinant BCG strain over-expressing r30 (Group C) had induration in response to r30. Similarly, animals immunized with the growth-restricted strain rBCG(mbtB)30, when administered as a high dose (Group K) showed induration upon testing with r30. Animals immunized with a low dose of the growth-restricted strain rBCG(mbtB)30 (Group H) showed no induration upon testing with r30. Interestingly, as previously observed, the recombinant BCG expressing both r30 and human interferon gamma (Group D) did not show induration upon testing with r30, although it did display some erythema.
3. Protective Immunity to Aerosol Challenge. Part A:
Ten weeks after immunization, the remaining animals in Groups A-K were challenged with an aerosol generated from a 10 ml single-cell suspension containing 7.5×104 CFU of M. tuberculosis. This aerosol dose delivered  ̃10 live bacilli to the lungs of each animal. The airborne route of infection was used because this is the natural route of infection for pulmonary tuberculosis. A relatively large dose was used so as to induce measurable clinical illness in 100% of control animals within a relatively short time frame (10 weeks). Afterwards, guinea pigs were individually housed in stainless steel cages contained within a laminar flow biohazard safety enclosure and allowed free access to standard laboratory chow and water. The animals were observed for illness and weighed weekly for 10 weeks and then euthanized. The right lung and spleen of each animal was removed and cultured for CFU of M. tuberculosis on Middlebrook 7H11 agar for two weeks at 37° C., 5% CO2-95% air atmosphere. The results of the assay for CFU in the lungs and spleens are shown in Table 6.







TABLE 6







CFU in Lungs and Spleens - Experiment 3, Part A












Lung
Spleen




(Mean Log
(Mean Log


Group
Strain
CFU ± SE)
CFU ± SE)





A
Sham
6.63 ± 0.22
6.41 ± 0.22


B
BCG
5.17 ± 0.09
4.48 ± 0.06


C
rBCG30
4.23 ± 0.13
3.47 ± 0.09


D
rBCG30/hINFγ
4.03 ± 0.09
2.57 ± 0.26


E
rBCG/hINFγ
5.11 ± 0.07
4.39 ± 0.05


F
103 BCG-Tyl.
4.96 ± 0.08
4.59 ± 0.07


G
103rBCG(mbtB) Hi Fe
5.37 ± 0.16
4.79 ± 0.18


H
103rBCG(mbtB)30 Hi Fe
5.01 ± 0.16
4.63 ± 0.26


I
106BCG-Tyl.
5.17 ± 0.09
4.31 ± 0.08


J
106rBCG(mbtB) Hi Fe
4.83 ± 0.12
4.23 ± 0.12


K
106rBCG(mbtB)30 Hi Fe
4.56 ± 0.21
3.94 ± 0.21









These results showed that animals immunized with BCG or any recombinant BCG strain had much lower CFU in the lungs and spleens than the sham immunized animals.
Animals immunized with the recombinant BCG strain secreting both the M. tuberculosis 30 kDa major secretory protein and human interferon gamma (rBCG30/hINFγ) had markedly fewer CFU in the lung and spleen than animals immunized with rBCG30; animals immunized with rBCG30/hINFγ had 0.2 logs fewer CFU in the lung and 0.9 logs fewer CFU in the spleen than rBCG30-immunized animals.
Importantly, animals immunized with the recombinant BCG vaccine secreting only human interferon gamma did not show protection significantly different from BCG. Hence, it was the co-expression of both the 30 kDa protein and human interferon gamma that was necessary for the superior efficacy of the rBCG30/hINFγ vaccine.
Furthermore, animals immunized with the high dose of the growth-restricted recombinant BCG strain over-expressing the M. tuberculosis 30 kDa major secretory protein [rBCG(mbtB)30]) showed an impressive reduction in CFU in animal organs compared with BCG, whether or not the BCG vaccine was grown in tyloxapol. There was no significant difference in potency of BCG vaccines grown in the presence or the absence of tyloxapol.
4. Protective Immunity to Aerosol Challenge. Part B:
Twenty weeks after immunization, the animals in Groups L-O were challenged with an aerosol generated from a 10 ml single-cell suspension containing 7.5×104 CFU of M. tuberculosis. This aerosol dose delivered  ̃10 live bacilli to the lungs of each animal. The airborne route of infection was used because this is the natural route of infection for pulmonary tuberculosis. A relatively large dose was used so as to induce measurable clinical illness in 100% of control animals within a relatively short time frame (10 weeks). Afterwards, guinea pigs were individually housed in stainless steel cages contained within a laminar flow biohazard safety enclosure and allowed free access to standard laboratory chow and water. The animals were observed for illness and weighed weekly for 10 weeks and then euthanized. The right lung and spleen of each animal was removed and cultured for CFU of M. tuberculosis on Middlebrook 7H11 agar for two weeks at 37° C., 5% CO2-95% air atmosphere. The results of the assay for CFU in the lungs and spleens are shown in Table 7.







TABLE 7







CFU in Lungs and Spleens - Experiment 3, Part B












Lung
Spleen




(Mean Log
(Mean Log


Group
Strain
CFU ± SE)
CFU ± SE)





A
Sham
6.46 ± 0.08
6.07 ± 0.01


B
BCG
4.06 ± 0.12
3.51 ± 0.09


C
rBCG30
3.33 ± 0.10
2.94 ± 0.08


D
rBCG30/hINFγ
1.74 ± 0.06
1.57 ± 0.09









In the case of animals immunized with rBCG30/hINFγ, 5 of 12 animals had no detectable CFU in their lungs and 7 of 12 animals had no CFU in their spleens and thus were scored at the limit of detection of 1.6 logs in the lungs and 1.3 logs in the spleen. In contrast, in the case of rBCG30 immunized animals, none of the animals had no detectable CFU in the lungs or spleen. Compared with animals immunized with rBCG30, animals immunized with rBCG30/hINFγ had 1.6 logs fewer CFU in the lung and 1.4 logs fewer CFU in the spleen. Compared with animals immunized with BCG, animals immunized with rBCG30/hINFγ had 2.3 logs fewer CFU in the lung and 1.9 logs fewer CFU in the spleen.
Example 2
rBCGs Expressing Proteins Integrated into Genomic DNA
In another embodiment of the present invention, the genes encoding immunogenic intracellular pathogen proteins and/or cytokines can be integrated into the chromosome. For example, rBCG strains have been generated that over-express the M. tuberculosis 30 kDa protein from the chromosome through an allelic exchange procedure. A cassette containing the fbpB gene (encoding the 30 kDa protein) with expression driven from the rrs promoter was cloned into a wild-type glnA1 locus, just downstream of glnA1. This glnA1 locus with the fbpB insertion was cloned into phEX2 (a derivative of phEX1, itself a derivative of phAE87 [Bardarov et al., Microbiol. 148:3007-3017, 2002]) and specialized transducing phage was prepared by electroporating the plasmid into M. smegmatis. The phage was used to infect BCG strains and clones over-expressing the 30 kDa protein were selected.
Unless otherwise indicated, all numbers expressing quantities of ingredients, properties such as molecular weight, reaction conditions, and so forth used in the specification and claims are to be understood as being modified in all instances by the term “about.” Accordingly, unless indicated to the contrary, the numerical parameters set forth in the following specification and attached claims are approximations that may vary depending upon the desired properties sought to be obtained by the present invention. At the very least, and not as an attempt to limit the application of the doctrine of equivalents to the scope of the claims, each numerical parameter should at least be construed in light of the number of reported significant digits and by applying ordinary rounding techniques. Notwithstanding that the numerical ranges and parameters setting forth the broad scope of the invention are approximations, the numerical values set forth in the specific examples are reported as precisely as possible. Any numerical value, however, inherently contains certain errors necessarily resulting from the standard deviation found in their respective testing measurements.
The terms “a,” “an,” “the,” and similar referents used in the context of describing the invention (especially in the context of the following claims) are to be construed to cover both the singular and the plural, unless otherwise indicated herein or clearly contradicted by context. Recitation of ranges of values herein is merely intended to serve as a shorthand method of referring individually to each separate value falling within the range. Unless otherwise indicated herein, each individual value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g. “such as”) provided herein is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention otherwise claimed. No language in the specification should be construed as indicating any non-claimed element essential to the practice of the invention.
Groupings of alternative elements or embodiments of the invention disclosed herein are not to be construed as limitations. Each group member may be referred to and claimed individually or in any combination with other members of the group or other elements found herein. It is anticipated that one or more members of a group may be included in, or deleted from, a group for reasons of convenience and/or patentability. When any such inclusion or deletion occurs, the specification is herein deemed to contain the group as modified thus fulfilling the written description of all Markush groups used in the appended claims.
Certain embodiments of this invention are described herein, including the best mode known to the inventors for carrying out the invention. Of course, variations on those embodiments will become apparent to those of ordinary skill in the art upon reading the foregoing description. The inventor expects skilled artisans to employ such variations as appropriate, and the inventors intend for the invention to be practiced otherwise than specifically described herein. Accordingly, this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Moreover, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.
Furthermore, numerous references have been made to patents and printed publications throughout this specification. Each of the above cited references and printed publications are individually incorporated by reference herein in their entirety.
In closing, it is to be understood that the embodiments of the invention disclosed herein are illustrative of the principles of the present invention. Other modifications that may be employed are within the scope of the invention. Thus, by way of example, but not of limitation, alternative configurations of the present invention may be utilized in accordance with the teachings herein. Accordingly, the present invention is not limited to that precisely as shown and described.

## Claims

1. An immunogenic composition for inducing a protective immune response in a host comprising:
a recombinant Bacille Calmette Guerin (rBCG) expressing:
(1) at least one Mycobacteria major extracellular protein selected from the group consisting of 23.5 kDa protein, 30 kDa protein, 32A kDa protein, and 32B kDa protein, and combinations thereof; and
(2) at least one cytokine selected from the group consisting of interferon gamma, interleukin-4 receptor, interleukin-2, interleukin-12, granulocyte macrophage colony stimulating factor,

wherein said at least one Mycobacteria major extracellular protein and said at least one cytokine are expressed under the control of a promoter that is not a heat shock promoter and said at least one Mycobacteria major extracellular protein is over-expressed and secreted; and wherein said at least one Mycobacteria major extracellular protein and said at least one cytokine act synergistically to induce the protective immune response in the host.

2. The immunogenic composition according to claim 1 wherein at least one of said at least one Mycobacteria major extracellular protein are expressed on one or more extrachromosomal nucleic acid sequences.

3. The immunogenic composition according to claim 1 wherein at least one of said at least one cytokines are expressed on one or more extrachromosomal nucleic acid sequences.

4. The immunogenic composition according to claim 2 wherein more than one of said at least one Mycobacteria major extracellular protein are expressed on one or more extrachromosomal nucleic acid sequences.

5. The immunogenic composition according to claim 4 wherein each of said at least one Mycobacteria major extracellular protein are expressed from different extrachromosomal nucleic acid sequences.

6. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein and said at least one cytokine are expressed from different extrachromosomal nucleic acid sequences.

7. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein and said at least one cytokine are expressed from the same extrachromosomal nucleic acid sequence.

8. The immunogenic composition according to claim 1 wherein at least one of said at least one Mycobacteria major extracellular protein are integrated into the rBCG genome under the control of said promoter that is not a heat shock promoter and over-expressed.

9. The immunogenic composition according to claim 1 wherein at least one of said at least one cytokine are integrated into the rBCG genome under the control of said promoter that is not a heat shock promoter and over-expressed.

10. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein and said at least one cytokine are integrated into the rBCG genome under the control of said promoter that is not a heat shock promoter and over-expressed.

11. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein are non-fusion proteins.

12. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein are fusion proteins.

13. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein and at least one cytokine comprise a fusion protein.

14. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein is from a species of Mycobacterium selected from the group consisting of Mycobacterium tuberculosis, Mycobacterium bovis, Mycobacterium leprae, and Mycobacterium avium intracellulare.

15. The immunogenic composition according to claim 1 wherein said at least one Mycobacteria major extracellular protein is the 30 kDa protein.

16. The immunogenic composition according to claim 1 wherein said immunogenic composition expresses the 30 kDa, 32A kDa and 32B kDa Mycobacteria major extracellular proteins, the interleukin 4 receptor and interferon gamma.

17. The immunogenic composition according to claim 1 wherein said immunogenic composition expresses the 30 kDa Mycobacteria major extracellular protein, the interleukin 4 receptor and interferon gamma.

18. The immunogenic composition according to claim 1 wherein said immunogenic composition expresses the 30 kDa and 23.5 kDa Mycobacteria major extracellular proteins, the interleukin 4 receptor and interferon gamma.

19. An immunogenic composition for inducing a protective immune response in a host comprising:
an rBCG expressing
(1) at least one Mycobacteria major extracellular protein selected from the group consisting of the 30 kDa, 32A kDa and 32B kDa proteins from at least one extrachromosomal nucleic acid sequence such that said at least one Mycobacteria major extracellular protein is over-expressed and secreted; and
(2) interferon gamma from a further extrachromosomal nucleic acid sequence;

wherein said at least one Mycobacteria major extracellular protein and said interferon gamma are expressed under the control of a promoter that is not a heat shock promoter; and wherein said at least one Mycobacteria major extracellular protein and said interferon gamma act synergistically to induce the protective immune response in the host.

20. An immunogenic composition for inducing a protective immune response in a host comprising:
an rBCG, wherein said rBCG expresses:
(1) at least one Mycobacteria major extracellular protein selected from the group consisting of the 30 kDa, 32A kDa and 32B kDa proteins, such that said at least one Mycobacteria major extracellular protein is over-expressed and secreted; and
(2) interferon gamma,

wherein nucleic acid sequences encoding for said at least one Mycobacteria major extracellular protein and said interferon gamma are incorporated into the rBCG chromosome under a promoter that is not a heat shock promoter; and wherein said at least one Mycobacteria major extracellular protein and said interferon gamma act synergistically to induce the protective immune response in the host.

21. The immunogenic composition of claim 19, wherein said interferon gamma is expressed from a M. tuberculosis promoter selected from the rrs promoter and the 23.5 kDa protein promoter.

22. The immunogenic composition of claim 19 wherein said at least one Mycobacteria major extracellular protein is the 30 kDa protein.

23. The immunogenic composition of claim 20, wherein said interferon gamma is expressed from a M. tuberculosis promoter selected from the rrs promoter and the 23.5 kDa protein promoter.

24. The immunogenic composition of claim 20 wherein said at least one Mycobacteria major extracellular protein is the 30 kDa protein.

25. An immunogenic composition for inducing a protective immune response in a host comprising:
an rBCG, wherein said rBCG expresses:
(1) at least one Mycobacteria major extracellular protein selected from the group consisting of the 30 kDa, 32A kDa and 32B kDa proteins, wherein said at least one Mycobacteria protein is incorporated into the rBCG chromosome under a promoter that is not a heat shock promoter such that said at least one Mycobacteria major extracellular protein is over-expressed and secreted; and
(2) interferon gamma, wherein said interferon gamma is expressed from an extrachromosomal nucleic acid sequence under a promoter that is not a heat shock promoter;

wherein said at least one Mycobacteria major extracellular protein and said interferon gamma act synergistically to induce the protective immune response in the host.

26. The immunogenic composition of claim 25, wherein said interferon gamma is expressed from a M. tuberculosis promoter selected from the rrs promoter and the 23.5 kDa protein promoter.

27. The immunogenic composition of claim 25 wherein said at least one Mycobacteria major extracellular protein is the 30 kDa protein.