# Patent

## Title
GLP-1 compounds

## Abstract

GLP-1 compounds comprising GLP-1 analogs and methods of using the GLP-1 compounds for treating metabolic disorders, enhancing insulin expression, and promoting insulin secretion in a patient are provided.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a National Stage application under 35 U.S.C. §371 of International Application No. PCT/US2007/067150 (which designated the United States), having an international filing date of Apr. 20, 2007, which claims the benefit of U.S. Provisional Patent Application Ser. No. 60/793,707, filed Apr. 20, 2006, each of which is explicitly incorporated herein by reference in its entirety for all purposes.


REFERENCE TO THE SEQUENCE LISTING
The present application is being filed along with a Sequence Listing in electronic format. The Sequence Listing is provided as a file entitled A1113USPCT_SEQUENCE_LISTING RV2, created Oct. 26, 2009, which is 168 KB in size. The information in the electronic format of the Sequence Listing is incorporated herein by reference in its entirety.
BACKGROUND
Glucagon-like peptide 1 (GLP-1) and the related peptide glucagon are produced via differential processing of proglucagon and have opposing biological activities.
Proglucagon itself is produced in α-cells of the pancreas and in the enteroendocrine L-cells, which are located primarily in the distal small intestine and colon. In the pancreas, glucagon is selectively cleaved from proglucagon. In the intestine, in contrast, proglucagon is processed to form GLP-1 and glucagon-like peptide 2 (GLP-2), which correspond to amino acid residues 78-107 and 126-158 of proglucagon, respectively (see, e.g., Irwin and Wong, 1995, Mol. Endocrinol. 9:267-277 and Bell et al., 1983, Nature 304:368-371). By convention, the numbering of the amino acids of GLP-1 is based on the GLP-1 (1-37) formed from cleavage of proglucagon. The biologically active forms are generated from further processing of this peptide, which yields GLP-1 (7-37)-OH and GLP-1 (7-36)-NH2. The first amino acid of these processed peptides is His7. Both GLP-1 (7-37)-OH (or simply GLP-1 (7-37)) and GLP-1 (7-36)-NH2 have the same activities. For convenience, the term “GLP-1”, is used to refer to both of these forms.
Glucagon is secreted from the α-cells of the pancreas in response to low blood glucose, with the main target organ for glucagon being the liver. Glucagon stimulates glycogen breakdown and inhibits glycogen biosynthesis. It also inhibits fatty acid synthesis, but enhances gluconeogenesis. The net result of these actions is to significantly increase the release of glucose from the liver. GLP-1, in contrast, lowers glucagon secretion, while stimulating insulin secretion, glucose uptake and cyclic-AMP (cAMP) formation in response to absorption of nutrients by the gut. Various clinical data provide evidence of these activities. The administration of GLP-1, for example, in poorly controlled type 2 diabetics normalized their fasting blood glucose levels (see, e.g., Gutniak, et al., 1992, New Eng. J. Med. 326:1316-1322).
GLP-1 has a number of other important activities. For instance, GLP-1 also inhibits gastric motility and gastric secretion (see, e.g., Tolessa, 1998, J. Clin. Invest. 102:764-774). This effect, sometimes referred to as the ileal brake effect, results in a lag phase in the availability of nutrients, thus significantly reducing the need for rapid insulin response.
Studies also indicate that GLP-1 can promote cell differentiation and replication, which in turn aids in the preservation of pancreatic islet cells and an increase in β-cell mass (See, e.g., Andreasen et al., 1994, Digestion 55:221-228; Wang, et al., 1997, J. Clin. Invest. 99:2883-2889; Mojsov, 1992, Int. J. Pep. Prot. Res. 40:333-343; and Xu et al., 1999, Diabetes 48:2270-2276). Evidence also indicates that GLP-1 can increase satiety and decrease food intake (see, e.g., Toft-Nielsen et al., 1999, Diabetes Care 22:1137-1143; Flint et al., 1998, J. Clin. Invest. 101:515-520; Gutswiller et al., 1999 Gut 44:81-86).
Other research indicates that GLP-1 induces β-cell-specific gene expression, including GLUT-1 transporter, insulin receptor and hexokinase-1 (see, e.g., Perfetti and Merkel, 2000, Eur. J. Endocrinol. 143:717-725). Such induction could reverse glucose intolerance often associated with aging.
Because GLP-1 plays a key role in regulating metabolic homeostasis, it is an attractive target for treating a variety of metabolic disorders, including diabetes, obesity and metabolic syndrome. Current treatments for diabetes include insulin injection and administration of sulfonylureas, metformin and TZDs. These approaches, however, have significant shortcomings. Insulin injections, for instance, require complicated dosing considerations, and treatment with sulfonylureas often becomes ineffective over time, metformin can induce hypoglycemia and TZDs have side effects such as body weight gain and edema. Potential advantages of GLP-1 therapy include: 1) increased safety because insulin secretion is dependent on hyperglycemia, 2) suppression of glucagon secretion which in turn suppresses excessive glucose output, and 3) slowing of gastric emptying, which in turn slows nutrient absorption and prevents sudden glucose increases.
A key hurdle for effective treatment with GLP-1, however, has been the very short half-life of the peptide, which typically is only a few minutes (see, e.g., Holst, 1994, Gastroenterology 107:1848-1855). Various analogs have been developed with the goal of extending the half-life of the molecule. Some of these, however, have significant gastrointestinal side effects, including vomiting and nausea (see, e.g., Agerso et al., 2002, Diabetologia 45:195-202).
Accordingly, there thus remains a need for improved molecules that have GLP-1 type activity, for use in the treatment of various metabolic diseases such as diabetes, obesity, irritable bowel syndrome and metabolic syndrome.
SUMMARY
GLP-1 compounds that comprise GLP-1 analogs and have an activity of GLP-1 (e.g., insulinotropic activity) are disclosed herein. Methods for treating a variety of diseases by administering an effective amount of the compositions are also provided.
Such methods can be used to treat, for example, diabetes, impaired glucose tolerance, insulin resistance, various lipid disorders, obesity, cardiovascular diseases and bone disorders.
Some of the GLP-1 compounds that are provided herein, for example, comprise a GLP-1 analog that comprises the amino acid sequence of formula I (SEQ ID NO: 5):







(Formula I, SEQ ID NO: 5)


Xaa7-Gly-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-Xaa15-


 


Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-Cys-


 


Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-Xaa31-


 


Xaa32-Xaa33-Xaa34-Gly-Xaa36-Xaa37-Ser-Ser-Gly-Ala-


 


Pro-Pro-Pro-Ser-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa33 is: Val or Lys;
        Xaa34 is: Lys or Asn;
        Xaa36 is: Arg or Gly;
        Xaa37 is: Gly or Pro;

wherein the compound has a GLP-1 activity. In a particular aspect, the GLP-1 analog has the amino acid sequence of SEQ ID NO: 7 or 8 with no more than 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8, Xaa23, or any of Xaa38 to Xaa45. In another particular aspect, the GLP-1 analog has the amino acid sequence of any of SEQ ID NO: 7 or 8.

    
    


Other GLP-1 compounds as provided herein comprise a GLP-1 analog that comprises the amino acid sequence of formula II (SEQ ID NO: 9)







(Formula II, SEQ ID NO: 9)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Xaa37-Cys-Ser-


 


Gly-Gly-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, Aib (2-aminoisobutryic acid) or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 37 is Pro, Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;

wherein the compound has a GLP-1 activity. In a particular aspect, the GLP-1 analog has the amino acid sequence of SEQ ID NO: 11 or 12 with no more than 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8 or any of Xaa38 to Xaa41. In another particular aspect, the GLP-1 analog has the amino acid sequence of SEQ ID NO: 11 or 12.

    
    


Still other GLP-1 compounds as provided herein comprise a GLP-1 analog that comprises the amino acid sequence of formula III (SEQ ID NO: 13)







(Formula III, SEQ ID NO: 13)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Gly-Xaa38-


 


Xaa39-Xaa40-Xaa41-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, Aib (2-aminoisobutryic acid) or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is Aib (2-aminoisobutyric acid), 1-amino-cylcopentanecarboxylic acid, an alpha-alpha-disubstituted amino acid, or Aad (2-aminoadipic acid);
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 38 is Cys, Gly, or is omitted;
        Xaa at position 39 is Ala, Gly, Ser, Cys, or is omitted;
        Xaa at position 40 is Gly or is omitted;
        Xaa at position 41 is Gly or is omitted;

provided that when the amino acid at position 38, 39, 40, or 41 is omitted, then each amino acid downstream of that amino acid is also omitted, and wherein the compound has a GLP-1 activity. In a particular aspect, the GLP-1 analog has the amino acid sequence of any of SEQ ID NO: 16 to 28 with no more than 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8, Xaa22, or any of Xaa38 to Xaa41. In another particular aspect, the GLP-1 analog has the amino acid sequence of any of SEQ ID NO: 16 to 28.

    
    


Certain GLP-1 compounds as provided herein comprise a GLP-1 analog that comprises the amino acid sequence of Formula IV (SEQ ID NO: 29)







(Formula IV, SEQ ID NO: 29)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Xaa37-Xaa38-


 


Xaa39-Xaa40-Xaa41C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, 2-aminoisobutryic acid or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or alpha, gamma-diaminobutryic acid, homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 37 is Pro, Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 38 is Gly, Ser, Lys, Cys, or is omitted;
        Xaa at position 39 is Gly, Ala, Ser, Thr, Ile, Val, Leu, Phe, Pro, Cys or is omitted;
        Xaa at position 40 is Gly, Cys, or is omitted;
        Xaa at position 41 is Gly or is omitted;

wherein two amino acids selected from Xaa18, Xaa19, Xaa20, Xaa21, Xaa22, Xaa23, Xaa24, Xaa25, Xaa26, Xaa27, Xaa28, Xaa29, and Xaa30 are joined to form a ring and the two amino acids forming the ring are separated by 0, 1, 2, 3, 4 or 5 amino acids, and wherein the compound has a GLP-1 activity. In a particular aspect, the GLP-1 analog has the amino acid sequence of any of SEQ ID NO: 30 to 246 with no more than 5 conservative amino acid substitutions. In another particular aspect, the GLP-1 analog has the amino acid sequence of any of SEQ ID NO: 30 to 246.

    
    


In still another aspect, a GLP-1 compound as provided herein comprises a GLP-1 analog comprising the amino acid sequence shown in formula VI:







(Formula VI, SEQ ID NO: 276)


Xaa4-Xaa5-Xaa6-His7-Ala8-Glu9-Gly10-Thr11-Phe12-


 


Thr13-Ser14-Asp15-Val16-Ser17-Ser18-Tyr19-Leu20-


 


Glu21-Gly22-Gln23-Ala24-Ala25-Lys26-Glu27-Phe28-


 


Ile29-Ala30-Trp31-Leu32-Val33-Lys34-Gly35-Arg36-


 


C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 4 is: Met or omitted;
        Xaa at position 5 is: Met, His, or omitted;
        Xaa at position 6 is: Met, Ala, Gly, Pro, Ser, Thr, Val, Gln, Arg, Lys, His, Tyr, Ile, Asp, Leu, Asn, Glu, Trp, or Phe;

provided that when the amino acid at position 5 is omitted, then the amino acid at position 4 is also omitted, wherein the compound has a GLP-1 activity.

    
    


Also provided are pharmaceutical compositions comprising a pharmaceutically acceptable carrier and an effective amount of a GLP-1 compound as described herein.
In addition, methods are provided for treating a subject with a metabolic disorder, comprising administering to the subject an effective amount of a GLP-1 compound as provided herein or a pharmaceutical composition comprising a GLP-1 compound as provided herein, wherein the metabolic disorder is selected from the group of diabetes, obesity and metabolic syndrome.
In addition, methods are provided for enhancing insulin expression in a subject and methods for promoting insulin secretion in a subject, comprising administering to the subject an effective amount of a GLP-1 compound as provided herein or a pharmaceutical composition comprising a GLP-1 compound as provided herein.
In certain aspects, a GLP-1 compound as provided herein can be covalently modified with a water-soluble polymer, such as polyethylene glycol, monomethoxy-polyethylene glycol, dextran, cellulose, poly-(N-vinyl pyrrolidone) polyethylene glycol, propylene glycol homopolymers, polypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols, or polyvinyl alcohol.
Specific embodiments will become evident from the following more detailed description of certain embodiments and the claims.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 is a schematic representation of examples of the positions within GLP-1 separated by 3 amino acids that can be joined to form a cyclic lactam.
FIGS. 2A through 2I depict chemical structures of exemplary GLP-1 analogs in which the side chains of a glutamic acid/lysine amino acid pair are joined to form a ring. GLP-1 residues are shown in single letter code, whereas atoms for expanded amino acids are shown using normal chemical abbreviations for the elements. The number of ethylene glycol repeating units —[CH2CH2-O]n- can vary depending on the size of polyeyhleneglycol desired (e.g, 5 kDa to 60 kDa).
FIG. 3 illustrates an exemplary approach for synthesizing an analog that includes a Gly substitution at position 8, an Aib substitution at position 22 and the addition of a cysteine and an alanine at the C-terminus (i.e., SEQ ID NO:18).
FIG. 4 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of a glutamic acid and lysine residue are joined to form a cyclic lactam.
FIG. 5 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of glutamic acid and ornithine are joined to form a cyclic lactam.
FIG. 6 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of an aspartic acid and lysine residue are joined to form a cyclic lactam.
FIG. 7 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of aspartic acid and ornithine are joined to form a cyclic lactam.
FIG. 8 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of a lysine and glutamic acid residue are joined to form a cyclic lactam.
FIG. 9 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of homoglutamic acid and lysine are joined to form a cyclic lactam.
FIG. 10 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of 4-carboxy-phenylalanine and lysine are joined to form a cyclic lactam.
FIG. 11 provides an exemplarly synthetic scheme for preparing a cyclic GLP-1 compound in which the side chains of beta-Homoglutamic acid and lysine are joined to form a cyclic lactam.
FIG. 12 shows a graph depicting blood glucose levels in mice treated with cgGLP-17, cgGLP-18, cgGLP-19, or cgGLP-09A.
FIG. 13 shows a graph depicting blood glucose levels in mice treated with cgGLP-19, cgGLP-20, cgGLP-23, or cgGLP-24.
FIG. 14 shows a graph depicting blood glucose levels in mice treated with mgGLP-20, cgGLP-26, mgGLP-22, or mgGLP-24.
FIG. 15 shows a graph depicting blood glucose levels in mice treated with mgGLP32.
FIG. 16 shows a graph depicting blood glucose levels during a set of GTT (glucose tolerance test) experiments conducted with mice treated with mgGLP-20, mgGLP-22 or mgGLP-24.
FIG. 17 shows a graph depicting blood glucose levels in mice treated with mgGLP-33.
FIG. 18 shows a graph depicting blood glucose levels in mice treated with mgGLP-32.
FIG. 19 shows a graph depicting blood glucose levels in mice treated with mgGLP-20.
FIG. 20 shows a graph depicting the effect of PEG size and shape on certain cgGLP-3, cgGLP-1, cgGLP-7 and cgGLP-2.
FIG. 21 shows a graph depicting the effect of PEG size and shape on cgGLP-6, cgGLP-4, cgGLP-8, cgGLP-5.
FIG. 22 shows a graph depicting the effect of PEG size and shape on cgGLP-25, cgGLP-26, cgGLP-24, cgGLP-28, cgGLP-29.
FIG. 23 shows a graph depicting the effect of PEG size and shape in vivo on db/db mice treated with a GLP-1 compound having the amino acid sequence set forth in SEQ ID NO:22 and either a cgGLP-25, cgGLP-26, cgGLP-27, cgGLP-29.



DETAILED DESCRIPTION
I. Definitions
As used in this specification and the appended claims, the singular forms “a,” “an” and “the” include plural references unless the content clearly dictates otherwise.
Unless defined otherwise, all technical and scientific terms used herein have the meaning commonly understood by a person skilled in the art to which this invention belongs. The following references provide one of skill with a general definition of many of the terms used in this invention: Singleton et al., DICTIONARY OF MICROBIOLOGY AND MOLECULAR BIOLOGY (2d ed. 1994); THE CAMBRIDGE DICTIONARY OF SCIENCE AND TECHNOLOGY (Walker ed., 1988); THE GLOSSARY OF GENETICS, 5TH ED., R. Rieger et al. (eds.), Springer Verlag (1991); and Hale & Marham, THE HARPER COLLINS DICTIONARY OF BIOLOGY (1991).
As used herein, the following terms have the meanings ascribed to them unless specified otherwise.
“Insulinotropic activity” refers to the ability to increase insulin synthesis, release or secretion in a glucose-dependent manner. The insulinotropic effect can result from any of a number of different mechanisms, including, but not limited to, an increase in the number of insulin positive cells and/or due to an increase in the amount of insulin synthesized or released from existing insulin positive cells in a given time period.
Insulinotropic activity can be assayed using methods known in the art, such as in vivo and in vitro experiments that measure GLP-1 receptor binding activity or receptor activiation (for example, assays using pancreatic islet cells or insulinoma cells as described in EP 619,322 and U.S. Pat. No. 5,120,712). In humans, insulinotropic activity can be measured by examining insulin levels or C-peptide levels.
The terms “nucleic acid,” “polynucleotide,” and “oligonucleotide” are used herein to include a polymeric form of nucleotides of any length, including, but not limited to, ribonucleotides or deoxyribonucleotides.
“Polypeptide” and “protein” are used interchangeably herein and include a molecular chain of amino acids linked through peptide bonds. The terms do not refer to a specific length of the product. Thus, “peptides,” and “oligopeptides,” are included within the definition of polypeptide. The terms include post-translational modifications of the polypeptide, for example, glycosylations, acetylations, phosphorylations and the like. In addition, protein fragments, analogs, mutated or variant proteins, fusion proteins and the like are included within the meaning of polypeptide. The terms also include molecules in which one or more amino acid analogs or unnatural amino acids are included.
The terms “identical” or percent “identity,” in the context of two or more nucleic acids or polypeptides, refer to two or more sequences or subsequences that are the same or have a specified percentage of nucleotides or amino acid residues that are the same, when compared and aligned for maximum correspondence, as measured using a sequence comparison algorithm such as those described below for example, or by visual inspection.
The phrase “substantially identical” as used herein refers to two or more sequences or subsequences that have at least 75%, preferably at least 85%, more preferably at least 90%, 95%, 96%, 97%, 98%, 99% or higher nucleotide or amino acid residue identity, when compared and aligned for maximum correspondence, as measured using a sequence comparison algorithm such as those described below for example, or by visual inspection. Most preferably the sequences are substantially identical over the full length of the sequences being compared, such as the coding region of a nucleotide for example.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are input into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. The sequence comparison algorithm then calculates the percent sequence identity for the test sequence(s) relative to the reference sequence, based on the designated program parameters.
Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith & Waterman, 1981, Adv. Appl. Math. 2:482, by the homology alignment algorithm of Needleman & Wunsch, 1970, J. Mol. Biol. 48:443, by the search for similarity method of Pearson & Lipman, 1988, Proc. Nat'l. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, Wis.), or by visual inspection [see generally, Current Protocols in Molecular Biology, (Ausubel, F. M. et al., eds.) John Wiley & Sons, Inc., New York (1987-1999, including supplements such as supplement 46 (April 1999)]. Use of these programs to conduct sequence comparisons are typically conducted using the default parameters specific for each program.
Another example of algorithm that is suitable for determining percent sequence identity and sequence similarity is the BLAST algorithm, which is described in Altschul et al., 1990, J. Mol. Biol. 215:403-410. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information. This algorithm involves first identifying high scoring sequence pairs (HSPs) by identifying short words of length W in the query sequence, which either match or satisfy some positive-valued threshold score T when aligned with a word of the same length in a database sequence. T is referred to as the neighborhood word score threshold (Altschul et al, supra.). These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are then extended in both directions along each sequence for as far as the cumulative alignment score can be increased.
Cumulative scores are calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. For identifying whether a nucleic acid or polypeptide is within the scope of the invention, the default parameters of the BLAST programs are suitable. The BLASTN program (for nucleotide sequences) uses as defaults a word length (W) of 11, an expectation (E) of 10, M=5, N=−4, and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a word length (W) of 3, an expectation (E) of 10, and the BLOSUM62 scoring matrix. The TBLATN program (using protein sequence for nucleotide sequence) uses as defaults a word length (W) of 3, an expectation (E) of 10, and a BLOSUM 62 scoring matrix. (see Henikoff & Henikoff, 1989, Proc. Natl. Acad. Sci. USA 89:10915).
In addition to calculating percent sequence identity, the BLAST algorithm also performs a statistical analysis of the similarity between two sequences (see, e.g., Karlin & Altschul, 1993, Proc. Nat'l. Acad. Sci. USA 90:5873-5787). One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance. For example, a nucleic acid is considered similar to a reference sequence if the smallest sum probability in a comparison of the test nucleic acid to the reference nucleic acid is less than about 0.1, more preferably less than about 0.01, and most preferably less than about 0.001.
A polypeptide is typically substantially identical to a second polypeptide, for example, where the two polypeptides differ only by conservative substitutions. A “conservative substitution” when describing a protein, refers to a change in the amino acid composition of the protein that does not substantially alter the protein's activity. Thus, “conservatively modified variations” of a particular amino acid sequence refers to amino acid substitutions of those amino acids that are not critical for protein activity or substitution of amino acids with other amino acids having similar properties (e.g., acidic, basic, positively or negatively charged, polar or non-polar, etc.) such that the substitutions of even critical amino acids do not substantially alter activity. Conservative substitution tables providing functionally similar amino acids are described herein and are well-known in the art (see, e.g., Creighton, 1984, Proteins, W.H. Freeman and Company). In addition, individual substitutions, deletions or additions that alter, add or delete a single amino acid or a small percentage of amino acids in an encoded sequence without substantially altering the protein's activity are also “conservatively modified variations.”
As used herein, the twenty conventional amino acids and their single letter and three letter abbreviations follow conventional usage. See IMMUNOLOGY—A SYNTHESIS, 2nd Edition, (E. S. Golub and D. R. Gren, Eds.), Sinauer Associates: Sunderland, Mass., 1991, incorporated herein by reference for any purpose. Stereoisomers (e.g., D-amino acids) of the twenty conventional amino acids; unnatural amino acids such as α-, α-disubstituted amino acids, N-alkyl amino acids, lactic acid, and other unconventional amino acids may also be suitable components for polypeptides provided herein. Examples of unconventional amino acids include: 4-hydroxyproline, γ-carboxyglutamate, εN,N,N-trimethyllysine, ε-N-acetyllysine, O-phosphoserine, N-acetylserine, N-formylmethionine, 3-methylhistidine, 5-hydroxylysine, σ-N-methylarginine, and other similar amino acids and imino acids (e.g., 4-hydroxyproline). Certain amino acid analogs that are referrenced herein are abbreviated as follows:

    
    
        bAla is beta-aminopropionic acid;
        J is Aad (2-aminoadipic acid; also called homoglutamic acid);
        Z is Aib (2-aminoisobutyric acid);
        O is ornithine;
        Cpa is 4-carboxy-phenylalanine; and
        B is beta glutamic acid.

When amino acids abbreviations are separated by a forward slash (i.e., a “/”), this means that any one of the amino acids separated by the forward slash can occur at the indicated position. For instance, K/O/C means that any one of lysine, ornithine or cysteine can occur at the indicated position.

    
    


The term alpha-alpha disubstituted amino acids as used herein has its normal meaning in the art and includes, for example, alpha-methyl-leucine, alpha-methyl-phenylalanine, alpha-methyl-tryptophan, 4-amino-1-piperidine, 2-amino-2,2-diphenylacetic acid.
In the polypeptide notation used herein, the left-hand direction is the amino terminal direction and the right-hand direction is the carboxyl-terminal direction, in accordance with standard usage and convention. The term “downstream” when used in reference to a GLP-1 compound means positions that are located toward the carboxyl end of the polypeptide relative to the position being referenced, i.e., to the right of the position being referenced. The term “upstream” when used in reference to a GLP-1 compound means positions that are located toward the amino terminal end of the polypeptide relative to the position being referenced, i.e., to the left of the position being referenced. The recommended IUPAC-IUB Nomenclature and Symbolism for Amino Acids and Peptides have been published in J. Biochem., 1984, 219, 345-373; Eur. J. Biochem., 1984, 138, 9-37; 1985, 152, 1; 1993, 213, 2; Internat. J. Pept. Prot. Res., 1984, 24, following p 84; J. Biol. Chem., 1985, 260, 14-42; Pure Appl. Chem., 1984, 56, 595-624; Amino Acids and Peptides, 1985, 16, 387-410; Biochemical Nomenclature and Related Documents, 2nd edition, Portland Press, 1992, pages 39-69.
Naturally occurring residues may be divided into classes based on common side chain properties:

    
    
        1) hydrophobic: norleucine (Nor), Met, Ala, Val, Leu, Ile;
        2) neutral hydrophilic: Cys, Ser, Thr, Asn, Gln;
        3) acidic: Asp, Glu;
        4) basic: His, Lys, Arg;
        5) residues that influence chain orientation: Gly, Pro; and
        6) aromatic: Trp, Tyr, Phe.
    
    


Conservative amino acid substitutions may involve exchange of a member of one of these classes with another member of the same class. Conservative amino acid substitutions may encompass non-naturally occurring amino acid residues, which are typically incorporated by chemical peptide synthesis rather than by synthesis in biological systems. These include peptidomimetics and other reversed or inverted forms of amino acid moieties.
Non-conservative substitutions may involve the exchange of a member of one of these classes for a member from another class. Such substituted residues may be introduced into regions of the human antibody that are homologous with non-human antibodies, or into the non-homologous regions of the molecule.
In making such changes, according to certain embodiments, the hydropathic index of amino acids may be considered. Each amino acid has been assigned a hydropathic index on the basis of its hydrophobicity and charge characteristics. They are: isoleucine (+4.5); valine (+4.2); leucine (+3.8); phenylalanine (+2.8); cysteine/cystine (+2.5); methionine (+1.9); alanine (+1.8); glycine (−0.4); threonine (−0.7); serine (−0.8); tryptophan (−0.9); tyrosine (−1.3); proline (−1.6); histidine (−3.2); glutamate (−3.5); glutamine (−3.5); aspartate (−3.5); asparagine (−3.5); lysine (−3.9); and arginine (−4.5).
The importance of the hydropathic amino acid index in conferring interactive biological function on a protein is understood in the art (see, for example, Kyte et al., 1982, J. Mol. Biol. 157:105-131). It is known that certain amino acids may be substituted for other amino acids having a similar hydropathic index or score and still retain a similar biological activity. In making changes based upon the hydropathic index, in certain embodiments, the substitution of amino acids whose hydropathic indices are within ±2 is included. In certain embodiments, those that are within ±1 are included, and in certain embodiments, those within ±0.5 are included.
It is also understood in the art that the substitution of like amino acids can be made effectively on the basis of hydrophilicity, particularly where the biologically functional protein or peptide thereby created is intended for use in immunological embodiments, as disclosed herein. In certain embodiments, the greatest local average hydrophilicity of a protein, as governed by the hydrophilicity of its adjacent amino acids, correlates with its immunogenicity and antigenicity, i.e., with a biological property of the protein.
The following hydrophilicity values have been assigned to these amino acid residues: arginine (+3.0); lysine (+3.0); aspartate (+3.0±1); glutamate (+3.0±1); serine (+0.3); asparagine (+0.2); glutamine (+0.2); glycine (0); threonine (−0.4); proline (−0.5±1); alanine (−0.5); histidine (−0.5); cysteine (−1.0); methionine (−1.3); valine (−1.5); leucine (−1.8); isoleucine (−1.8); tyrosine (−2.3); phenylalanine (−2.5) and tryptophan (−3.4). In making changes based upon similar hydrophilicity values, in certain embodiments, the substitution of amino acids whose hydrophilicity values are within ±2 is included, in certain embodiments, those that are within ±1 are included, and in certain embodiments, those within ±0.5 are included. One may also identify epitopes from primary amino acid sequences on the basis of hydrophilicity. These regions are also referred to as “epitopic core regions.”
Exemplary amino acid substitutions are set forth in Table 1.







TABLE 1







Amino Acid Substitutions











Original

Preferred



Residues
Exemplary Substitutions
Substitutions







Ala
Val, Leu, Ile
Val



Arg
Lys, Gln, Asn
Lys



Asn
Gln
Gln



Asp
Glu
Glu



Cys
Ser, Ala
Ser



Gln
Asn
Asn



Glu
Asp
Asp



Gly
Pro, Ala
Ala



His
Asn, Gln, Lys, Arg
Arg



Ile
Leu, Val, Met, Ala,
Leu




Phe Norleucine



Leu
Norleucine, Ile, Val,
Ile




Met, Ala, Phe



Lys
Arg, 1,4 Diamino-
Arg




butyric Acid, Gln, Asn



Met
Leu, Phe, Ile
Leu



Phe
Leu, Val, Ile, Ala, Tyr
Leu



Pro
Ala
Gly



Ser
Thr, Ala, Cys
Thr



Thr
Ser
Ser



Trp
Tyr, Phe
Tyr



Tyr
Trp, Phe, Thr, Ser
Phe



Val
Ile, Met, Leu, Phe, Ala,
Leu




Norleucine










Herein, the use of the protecting groups, linkers, and solid phase supports, as well as specific protection and deprotection reaction conditions, linker cleavage conditions, use of scavengers, and other aspects of solid phase peptide synthesis are well known and are also described in “Protecting Groups in Organic Synthesis,” 3rd Edition, T. W. Greene and P. G. M. Wuts, Eds., John Wiley & Sons, Inc., 1999; NovaBiochem Catalog, 2000; “Synthetic Peptides, A User's Guide,” G. A. Grant, Ed., W.H. Freeman & Company, New York, N.Y., 1992; “Advanced Chemtech Handbook of Combinatorial & Solid Phase Organic Chemistry,” W. D. Bennet, J. W. Christensen, L. K. Hamaker, M. L. Peterson, M. R. Rhodes, and H. H. Saneii, Eds., Advanced Chemtech, 1998; “Principles of Peptide Synthesis, 2nd ed.,” M. Bodanszky, Ed., Springer-Verlag, 1993; “The Practice of Peptide Synthesis, 2nd ed.,” M. Bodanszky and A. Bodanszky, Eds., Springer-Verlag, 1994; “Protecting Groups,” P. J. Kocienski, Ed., Georg Thieme Verlag, Stuttgart, Germany, 1994; “Fmoc Solid Phase Peptide Synthesis, A Practical Approach,” W. C. Chan and P. D. White, Eds., Oxford Press, 2000, G. B. Fields et al., Synthetic Peptides: A User's Guide, 1990, 77-183, and elsewhere.
A skilled artisan will be able to determine suitable variants of the polypeptide as set forth herein using well-known techniques. In certain embodiments, one skilled in the art may identify suitable areas of the molecule that may be changed without destroying activity by targeting regions not believed to be important for activity. In other embodiments, the skilled artisan can identify residues and portions of the molecules that are conserved among similar polypeptides. In further embodiments, even areas that may be important for biological activity or for structure may be subject to conservative amino acid substitutions without destroying the biological activity or without adversely affecting the polypeptide structure.
Additionally, one skilled in the art can review structure-function studies identifying residues in similar polypeptides that are important for activity or structure. In view of such a comparison, the skilled artisan can predict the importance of amino acid residues in a protein that correspond to amino acid residues important for activity or structure in similar proteins. One skilled in the art may opt for chemically similar amino acid substitutions for such predicted important amino acid residues.
One skilled in the art can also analyze the three-dimensional structure and amino acid sequence in relation to that structure in similar polypeptides. In view of such information, one skilled in the art may predict the alignment of amino acid residues of an antibody with respect to its three dimensional structure. In certain embodiments, one skilled in the art may choose to not make radical changes to amino acid residues predicted to be on the surface of the protein, since such residues may be involved in important interactions with other molecules. Moreover, one skilled in the art may generate test variants containing a single amino acid substitution at each desired amino acid residue. The variants can then be screened using activity assays known to those skilled in the art. Such variants could be used to gather information about suitable variants. For example, if one discovered that a change to a particular amino acid residue resulted in destroyed, undesirably reduced, or unsuitable activity, variants with such a change can be avoided. In other words, based on information gathered from such routine experiments, one skilled in the art can readily determine the amino acids where further substitutions should be avoided either alone or in combination with other mutations.
A number of scientific publications have been devoted to the prediction of secondary structure. See, for example, Moult, 1996, Curr. Op. in Biotech. 7:422-427; Chou et al, 1974, Biochemistry 13:222-245; Chou et al., 1974, Biochemistry 113:211-222; Chou et al., 1978, Adv. Enzymol. Relat. Areas Mol. Biol. 47:45-148; Chou et al., 1979, Ann. Rev. Biochem. 47:251-276; and Chou et al., 1979, Biophys. J. 26:367-384. Moreover, computer programs are currently available to assist with predicting secondary structure. One method of predicting secondary structure is based upon homology modeling. For example, two polypeptides or proteins that have a sequence identity of greater than 30%, or similarity greater than 40% often have similar structural topologies. The recent growth of the protein structural database (PDB) has provided enhanced predictability of secondary structure, including the potential number of folds within a polypeptide's or protein's structure. See Holm et al., 1999, Nucl. Acid. Res. 27:244-247. It has been suggested (Brenner et al., 1997, Curr. Op. Struct. Biol. 7:369-376) that there are a limited number of folds in a given polypeptide or protein and that once a critical number of structures have been resolved, structural prediction will become dramatically more accurate.
Additional methods of predicting secondary structure include “threading” (Jones, 1997, Curr. Opin. Struct. Biol. 7:377-87; Sippl et al., 1996, Structure 4:15-19), “profile analysis” (Bowie et al., 1991, Science 253:164-170; Gribskov et al., 1990, Meth. Enzym. 183:146-159; Gribskov et al., 1987, Proc. Nat. Acad. Sci. 84:4355-4358), and “evolutionary linkage” (See Holm, 1999, supra; and Brenner, 1997, supra).
According to certain embodiments, amino acid substitutions are those that: (1) reduce susceptibility to proteolysis, (2) reduce susceptibility to oxidation, (3) alter binding affinity for forming protein complexes, (4) alter binding affinities, and/or (5) confer or modify other physicochemical or functional properties on such polypeptides.
According to certain embodiments, single or multiple amino acid substitutions (in certain embodiments, conservative amino acid substitutions) may be made in the naturally occurring sequence (in certain embodiments, in the portion of the polypeptide outside the domain(s) forming intermolecular contacts). In certain embodiments, a conservative amino acid substitution typically does not substantially change the structural characteristics of the parent sequence (e.g., a replacement amino acid should not tend to break a helix that occurs in the parent sequence, or disrupt other types of secondary structure that characterizes the parent sequence). Examples of art-recognized polypeptide secondary and tertiary structures are described in PROTEINS, STRUCTURES AND MOLECULAR PRINCIPLES, (Creighton, Ed.), 1984, W. H. Freeman and Company, New York; INTRODUCTION TO PROTEIN STRUCTURE (C. Branden and J. Tooze, eds.), 1991, Garland Publishing, New York, N.Y.; and Thornton et al., 1991, Nature 354:105, each of which are incorporated herein by reference.
Peptide analogs are commonly used in the pharmaceutical industry as non-peptide drugs with properties analogous to those of the template peptide. These types of non-peptide compound are termed “peptide mimetics” or “peptidomimetics”. See Fauchere, 1986, Adv. Drug Res. 15:29; Veber & Freidinger, 1985, TINS p. 392; and Evans et al., 1987, J. Med. Chem. 30:1229, which are incorporated herein by reference for any purpose. Such compounds are often developed with the aid of computerized molecular modeling. Peptide mimetics that are structurally similar to therapeutically useful peptides may be used to produce a similar therapeutic or prophylactic effect. Generally, peptidomimetics are structurally similar to a paradigm polypeptide (i.e., a polypeptide that has a biochemical property or pharmacological activity), such as human antibody, but have one or more peptide linkages optionally replaced by a linkage selected from: —CH2—NH—, —CH2—S—, —CH2—CH2—, —CH═CH-(cis and trans), —COCH2—, —CH(OH)CH2—, and —CH2SO—, by methods well known in the art. Systematic substitution of one or more amino acids of a consensus sequence with a D-amino acid of the same type (e.g., D-lysine in place of L-lysine) may be used in certain embodiments to generate more stable peptides. In addition, constrained peptides comprising a consensus sequence or a substantially identical consensus sequence variation may be generated by methods known in the art (Rizo & Gierasch, 1992, Ann. Rev. Biochem. 61:387, incorporated herein by reference for any purpose); for example, by adding internal cysteine residues capable of forming intramolecular disulfide bridges which cyclize the peptide.
II. Overview
A variety of GLP-1 compounds are provided herein that comprise a GLP-1 analog, and which retain at least one activity of GLP-1. The GLP-1 analogs that are disclosed include one or more of the following characteristics: 1) amino acid substitutions at particular locations of GLP-1, 2) added amino acids at the N-terminus and/or the C-terminus of GLP-1, 3) absence of amino acids at the N-terminus and/or the C-terminus of GLP-1, and/or 4) presence of a ring formed by joining the side chains of specific amino acids with the polypeptide.
As described in greater detail below, the GLP-1 compounds that are provided can be administered therapeutically or prophylactically to treat a variety of diseases.
Examples of diseases that can be treated with the compounds include, but are not limited to, diabetes, impaired glucose tolerance, insulin resistance, hyperglycemia, metabolic syndrome, various lipid disorders, obesity, coronary diseases, bone disorders, and irritable bowel syndrome.
III. GLP-1 Compounds
A. Structure
As noted above, the term “GLP-1” refers to GLP-1 (7-37)-OH and GLP-1 (7-36)-NH2. The numbering of the amino acids of GLP-1 as used herein is based on GLP-1 (1-37) formed from cleavage of proglucagon.
Native GLP-1 (7-37)-OH has the following amino acid sequence:







(SEQ ID NO: 1)


7His-8Ala-9Glu-10Gly-11Thr-12Phe-13Thr-14Ser-


 


15Asp-16Val-17Ser-18Ser-19Tyr-20Leu-21Glu-22Gly-


 


23Gln-24Ala-25Ala-26Lys-27Glu-28Phe-29Ile-30Ala-


 


31Trp-32Leu-33Val-34Lys-35Gly-36Arg-37Gly.






As indicated in this formula, the amino terminal His residue is customarily referred to as amino acid residue 7 to reflect processing from GLP-1 (1-37); the carboxyl terminal Gly in turn is conventionally referred to as amino acid residue 37. As described in the Background section, the carboxyl terminus of GLP-1 (7-37)-OH can be cleaved to produce GLP-1 (7-36)-NH2. The other amino acids located between these two termini are numbered consecutively as shown. Thus, for example, the amino acid at position 8 is Ala and the amino acid at position 26 is Lys. Likewise, when reference is made herein to making a substitution at a specified position, the same numbering system applies. Hence, for example, a substitution of Ala at position 22 means that the Gly at position 22 has been substituted with Ala. If amino acids are added at the amino terminus of GLP-1 (7-36), the positions are consecutively numbered in decreasing order, such that the amino acid immediately upstream of position 7 is amino acid 6, and the next upstream amino acid is at position 5 and so on. If amino acids are added at the carboxyl terminus of GLP-1 (7-36), the positions are consecutively numbered in increasing order, such that the amino acid immediately downstream of position 36 is amino acid 37, and the next downstream amino acid is at position 38 and so on. As discussed above, both GLP-1 (7-37)-OH, also referred to as GLP-1 (7-37), and GLP-1 (7-36)-NH2 have the same activities. For convenience, the terms “GLP-1” and “native GLP-1” are used to refer to both of these biologically active forms.
A “GLP-1 compound” as used herein refers to a molecule that comprises a GLP-1 analog and may include one or more additional components (e.g., a component that extends the half-life of the compound in vivo).
The phase “GLP-1 activity” or grammatical equivalents thereof refers broadly to any activity associated with GLP-1. Examples of such activities include, but are not limited to, insulinotropic activity, inhibition of gastric motility, inhibition of gastric secretion, promotion of β-cell proliferation and replication, increase in β-cell mass, increase in satiety and decrease in food intake when GLP-1 is administered to a subject.
As used herein, the term “GLP-1 analog” refers to a polypeptide with one or more alterations in the amino acid sequence of native GLP-1 (7-37)-OH or GLP-1 (7-36)-NH2 but that retains at least one activity of native GLP-1. The GLP-1 analogs as provided herein as described herein include, for example, specific amino acid substitutions at particular residues of GLP-1. Some of the analogs also include added amino acid residues at the C-terminus, whereas others are shortened at the C-terminus. The GLP-1 analogs as provided herein markedly decrease blood glucose levels in various in vivo models and have extended half-lives relative to native GLP-1. As described herein, the GLP-1 analogs can be pegylated with one or more molecules of polyethylene glycol (PEG) to increase the in vivo half-life of the analog. Alternatively, GLP-1 analogs can be joined to another polypeptide to form a fusion protein, as described herein. In the formulas listed herein, R1 can be a carboxyl group, an amine, an ester, or a substituted amine. Thus, the GLP-1 analogs as provided herein can have a carboxyl or an amide group at its C-terminal end.
In certain embodiments, a GLP-1 analog as provided herein has one or more of the following characteristics:

    
    
        1) One or more amino acid substitutions (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10) relative to GLP-1;
        2) The addition of one or more additional amino acid residues at the C-terminus or N-terminus of GLP-1 (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids);
        3) Truncation of one or more amino acids at the N- or C-terminus (typically by 1, 2, 3, 4 or 5 amino acids); and/or
        4) A cyclic ring structure formed between side-chains on certain amino acids within the analog.
    
    


Certain GLP-1 analogs that are provided, for instance, include a specific amino acid substitution at one or more of positions 8, 22, 23, 26, 33, 34, 35, 36, and/or 37, including, but not limited to, the following substitutions:
8Ala: substitution with Gly, 2-aminoisobutryic acid (Aib) or beta-aminopropionic acid (bAla);
22Gly: substitution with 2-aminoisobutyric acid (Aib), 1-amino-cylcopentanecarboxylic acid, an alpha-alpha-disubstituted amino acid, or 2-aminoadipic acid;
23Gln: substitution with Cys;
26Lys: substitution with ornithine or homolysine;
33Val: substitution with Lys;
34Lys: substitution with Asn;
36Arg: substitution with Gly;
37Gly: substitution with Pro.
Some of the GLP-1 analogs include specific C-terminal extensions, including, for instance, the addition of Cys, Cys-Ala, Cys-Gly, Cys-Ser-Gly, Cys-Ser-Gly-Gly (SEQ ID NO: 278), or Gly-Cys (each of the foregoing being listed in the amino to carboxyl direction) to the amino acid at position 37.
Other GLP-1 analogs include specific N-terminal additions such as the addition of Met, Ala, Gly, Pro, Ser, Thr, Val, Gln, Arg, Lys, His, Tyr, Ile, Asp, Leu, Asn, Glu, Trp or Phe at the N-terminus of GLP-1. Some analogs are extended at the N-terminus by the addition of a MQ, MR, MK, MH, MY, MI, MD, ML, MN, ME, MW, MF or MM dipeptide to the amino terminus. Still other analogs have a MHH tripeptide added to the amino terminus.
The GLP-1 analogs can for ease of discussion be classified into certain families of molecules that share certain structural features. These can be most readily described by the general Formulas provided as follows.
One family, for instance, comprises or consists of the amino acid sequence shown in formula I:







(Formula I, SEQ ID NO: 5)


Xaa7-Gly-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-Xaa15-


 


Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-Cys-


 


Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-Xaa31-


 


Xaa32-Xaa33-Xaa34-Gly-Xaa36-Xaa37-Ser-Ser-Gly-Ala-


 


Pro-Pro-Pro-Ser-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa33 is: Val or Lys;
        Xaa34 is: Lys or Asn;
        Xaa36 is: Arg or Gly;
        Xaa37 is: Gly or Pro;
        wherein the compound has a GLP-1 activity.
    
    


In the formulas listed herein, R1 can be a carboxyl group, an amine, an ester, or a substituted amine. Thus, the GLP-1 analogs as provided herein can have a carboxyl or an amide group at its C-terminal end.
A second family of GLP-1 analogs comprises or consists of the amino acid sequence shown in formula II:







(Formula II, SEQ ID NO: 9)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Xaa37-Cys-Ser-


 


Gly-Gly-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, 2-aminoisobutryic acid or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid; Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 37 is Pro, Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;

wherein the compound has a GLP-1 activity.

    
    


A third family of GLP-1 analogs comprises or consists of the amino acid sequence shown in formula III (SEQ ID NO: 13):







(Formula III, SEQ ID NO: 13)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Gly-Xaa38-


 


Xaa39-Xaa40-Xaa41-C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, 2-aminoisobutryic acid or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 22 is 2-aminoisobutyric acid, 1-amino-cylcopentanecarboxylic acid, an alpha-alpha-disubstituted amino acid, or 2-aminoadipic acid;
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 38 is Cys, Gly, or is omitted;
        Xaa at position 39 is Ala, Gly, Ser, Cys, or is omitted;
        Xaa at position 40 is Gly or is omitted;
        Xaa at position 41 is Gly or is omitted;

provided that when the amino acid at position 38, 39, 40, or 41 is omitted, then each amino acid downstream of that amino acid is also omitted, and wherein the compound has a GLP-1 activity. Thus, for example, if the amino acid at position 38 is omitted, then there are also no amino acids at positions 39-41. Similarly, if the amino acid at position 39 is omitted, there are also no amino acids at positions 40 and 41. And if the amino acid at position 40 is omitted, then there is no amino acid at position 41.

    
    


Another family of GLP-1 analogs includes a ring or cyclic structure that is formed when two amino acids within the analog are joined together, typically via their side chains. The side chains may be joined directly to one another or via a linker.
Certain GLP-1 analogs in this family have the general structure shown in Formula V:




wherein

X is —N(Z1)—C(O)— or —C(O)—N(Z1)—;
Z1 is hydrogen or (C1-C8)alkyl;
X1 is at least 11 amino acids;
X2 is an amino acid;
X3 is a bond or 1-5 amino acids;
X4 is an amino acid;
X5 is at least 10 amino acids;
Z2 is —OZ3 or —NZ4Z5; and
Z3, Z4, and Z5 are independently hydrogen or (C1-C8)alkyl;
and wherein the amino acids comprising X1 and X5 correspond to amino acids from the amino and carboxyl portions of GLP-1, respectively, or similar sequences in which amino acids in the native GLP-1 sequence have been substituted with an amino acid such as described in Formulas X to Y.
Some cyclic GLP-1 analogs, for instance, comprise or consist of the amino acid sequence shown in formula IV:







(Formula IV, SEQ ID NO: 29)


Xaa7-Xaa8-Xaa9-Xaa10-Xaa11-Xaa12-Xaa13-Xaa14-


 


Xaa15-Xaa16-Xaa17-Xaa18-Xaa19-Xaa20-Xaa21-Xaa22-


 


Xaa23-Xaa24-Xaa25-Xaa26-Xaa27-Xaa28-Xaa29-Xaa30-


 


Xaa31-Xaa32-Xaa33-Xaa34-Xaa35-Xaa36-Xaa37-Xaa38-


 


Xaa39-Xaa40-Xaa41C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 7 is: L-histidine, D-histidine, desamino-histidine, 2-amino-histidine, 3-hydroxy-histidine, homohistidine, α-fluoromethyl-histidine or α-methyl-histidine;
        Xaa at position 8 is Gly, bAla (2-aminopropionic acid), 1-amino-cylcopentanecarboxylic acid, 2-aminoisobutryic acid or an alpha-alpha-disubstituted amino acid;
        Xaa at position 9 is Glu, Asp, or Lys;
        Xaa at position 10 is Gly or His;
        Xaa at position 11 is Thr, Ala, Gly, Ser, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 12 is: His, Trp, Phe, or Tyr;
        Xaa at position 13 is Thr or Gly;
        Xaa at position 14 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 15 is Asp or Glu;
        Xaa at position 16 is Val, Ala, Gly, Ser, Thr, Leu, Ile, Tyr, Glu, Asp, Trp, or Lys;
        Xaa at position 17 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 18 is Ser, Ala, Gly, Thr, Leu, Ile, Val, Glu, Asp, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 19 is Tyr, Phe, Trp, Glu, Asp, Gln, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 20 is Leu, Ala, Gly, Ser, Thr, Ile, Val, Glu, Asp, Met, Trp, Tyr, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 21 is Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 22 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 23 is Gln, Asn, Arg, Glu, Asp, Lys, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 24 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Arg, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 25 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 26 is Lys, Homolysine, Arg, Gln, Glu, Asp, His, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 27 is Leu, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 28 is Phe, Trp, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 29 is Ile, Leu, Val, Ala, Phe, Asp, Glu, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 30 is Ala, Gly, Ser, Thr, Leu, Ile, Val, Glu, Asp, Lys, Homolysine, Ornithine, 4-carboxy-phenylalanine, beta-glutamic acid, beta-Homoglutamic acid, alpha, gamma-diaminobutryic acid, or homoglutamic acid;
        Xaa at position 31 is Trp, Phe, Tyr, Glu, Asp, or Lys;
        Xaa at position 32 is Leu, Gly, Ala, Ser, Thr, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 33 is Val, Gly, Ala, Ser, Thr, Leu, Ile, Glu, Asp, or Lys;
        Xaa at position 34 is Asn, Lys, Arg, Glu, Asp, or His;
        Xaa at position 35 is Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 36 is Gly, Arg, Lys, Glu, Asp, or His;
        Xaa at position 37 is Pro, Gly, Ala, Ser, Thr, Leu, Ile, Val, Glu, Asp, or Lys;
        Xaa at position 38 is Gly, Ser, Lys, Cys, or is omitted;
        Xaa at position 39 is Gly, Ala, Ser, Thr, Ile, Val, Leu, Phe, Pro, Cys or is omitted;
        Xaa at position 40 is Gly, Cys, or is omitted;
        Xaa at position 41 is Gly or is omitted;

wherein two amino acids selected from Xaa18, Xaa19, Xaa20, Xaa21, Xaa22, Xaa23, Xaa24, Xaa25, Xaa26, Xaa27, Xaa28, Xaa29, and Xaa30 are joined to form a ring and the two amino acids forming the ring are separated by 0, 1, 2, 3, 4 or 5 amino acids, and wherein the compound has a GLP-1 activity.

    
    


In counting the number of amino acids involved in the separation, the two amino acids whose side chains are joined are excluded. Thus, for instance, the two amino acids whose side chains are joined to form a ring have 0 amino acids separating them when the two amino acids are beside each other (e.g., when the amino acids at positions Xaa18 and Xaa19 are joined to form a ring).
In a particular embodiment, the two amino acids that are joined to form a ring are separated by 3 or 4 amino acids, including for example when:
Xaa18 is joined to either Xaa22 or Xaa23; or
Xaa19 is joined to either Xaa23 or Xaa24; or
Xaa20 is joined to either Xaa24 or Xaa25 or
Xaa21 is joined to either Xaa25 or Xaa26; or
Xaa22 is joined to either Xaa26 or Xaa27; or
Xaa23 is joined to either Xaa27 or Xaa28; or
Xaa24 is joined to either Xaa28 or Xaa29; or
Xaa25 is joined to either Xaa29 or Xaa30 or
Xaa26 is joined to either Xaa30 or Xaa31.
A variety of different amino acids, amino acid analogs (e.g., unnatural amino acids) can be inserted at these positions. The amino acid or analogs are chosen to have reactive functional groups in the side chain that can be reacted together directly or via a linker to form a ring. The ring in some cyclic analogs, for instance, is formed by reacting a carboxyl group in the side chain of one amino acid or analog with an amino group in the side chain of the second amino acid or analog to form a cyclic lactam. Thus, for example, in certain embodiments, a ring structure is formed between the side chains of any two of Glu (E), Asp (D), Lys (K), Ornithine (O), 4-carboxy-phenylalanine (Cpa), beta-homoglutamic acid (B), alpha, gamma-diaminobutryic acid (Dab), and homoglutamic acid (J) that are located at the positions specified above as exemplified below:







FIG. 1, for example, depicts examples of the positions within GLP-1 that are separated by 3 amino acids that can be joined to form a cyclic lactam.
FIGS. 2A through 2I provide chemical structures in which a glutamic acid/lysine amino acid pair are joined to form a ring. It will be appreciated by those skilled in the art that the particular pairing can be replaced with any of the other pairings shown above, as well as other pairings.
Specific examples of the sequences of GLP-1 analogs that have the requisite amino acids at the appropriate locations that can be joined to form a cyclic lactam are set forth in SEQ ID NOS: 30 to 246 and are shown in Table 2, with the two amino acids that are joined to form the ring being indicated by bold and underlined type.
Some GLP-1 analogs include two cyclic structures. One example is







(SEQ ID NO: 277)









HGEGT FTSDV SSYLE GQAKK EFIAW LEKGR K






In this analog, the first E and K pair (at positions 21 and 25, respectively) form one cyclic lactam and the second E and K pair (at positions 33 and 37, respectively) form a second cyclic lactam. One or both pairs of the Glu (E) and Lys (K) residues can be substituted with the other amino acids or amino acid analogs such as those listed and illustrated above to form the cyclic lactam rings.

A final family of GLP-1 analogs comprises or consists of the amino acid sequence shown in formula VI:







(Formula VI, SEQ ID NO: 276)


Xaa4-Xaa5-Xaa6-His7-Ala8-Glu9-Gly10-Thr11-Phe12-


 


Thr13-Ser14-Asp15-Val16-Ser17-Ser18-Tyr19-Leu20-


 


Glu21-Gly22-Gln23-Ala24-Ala25-Lys26-Glu27-Phe28-


 


Ile29-Ala30-Trp31-Leu32-Val33-Lys34-Gly35-Arg36-


 


C(O)—R1






wherein,

    
    
        R1 is OR2 or NR2R3;
        R2 and R3 are independently hydrogen or (C1-C8)alkyl;
        Xaa at position 4 is: Met or omitted;
        Xaa at position 5 is: Met, His, or omitted;
        Xaa at position 6 is: Met, Ala, Gly, Pro, Ser, Thr, Val, Gln, Arg, Lys, His, Tyr, Ile, Asp, Leu, Asn, Glu, Trp, or Phe;

provided that when the amino acid at position 5 is omitted, then the amino acid at position 4 is also omitted, wherein the compound has a GLP-1 activity.

    
    


Certain GLP-1 analogs are exemplified in Table 2. Several of the sequences listed in Table 2 are shown as having a C-terminal amide. It should be understood, however, that all of the sequences listed in the Table 2 and described elsewhere in the specification can have a C-terminal carboxyl group or a C-terminal amide group. As used in Table 2: bAla is beta-aminopropionic acid; Aad is 2-aminoadipic acid; Z is Aib (2 aminoisobutyric acid); O is ornithine; Cpa is 4-carboxy-phenylalanine; Dab is alpha, gamma-diaminobutryic acid, and B is beta homoglutamic acid; J is homoglutamic acid. [K/O/C] means that the amino acid sequence optionally comprises any one of lysine, ornithine or cysteine at this position, but may include none of these amino acids.
Residues that are highlighted in bold and underlined indicate the amino acids that are joined (typically via their side chains) to form a ring or cyclic structure.









TABLE 2







SEQ ID


GLP-1 Analog
Internal Ref.
NO:

















HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR G

2


 


MHGEGT FTSDV SSYLE GQAAK EFIAW LVKGR

3


 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR GGGGG C
cgGLP-11
4


 


XGXXX XXXXX XXXXX XCXXX XXXXX XXXGX XSSGA PPPS
Formula I
5


 


HGEGT FTSDV SSYLE GCAAK EFIAW LVKGR G
cgGLP-1-3, 7, 9
6


 


HGEGT FTSDV SSYLE GCAAK EFIAW LVKGR GSSGA PPPS
cgGLP-12, 14
7


 


HGEGT FTSDV SSYLE GCAAK EFIAW LKNGG PSSGA PPPS
cgGLP-13, 15
8


 


XXXXX XXXXX XXXXX XXXXX XXXXX XXXXX XCSGG
Formula II
9


 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR GCSG
cgGLP-4-6, 8,
10



10, 16



 


HZEGT FTSDV SSYLE GQAAK EFIAW LVKGR GCSGG
cgGLP-17
11


 


H[bAla]EGT FTSDV SSYLE GQAAK EFIAW LVKGR GCSGG
cgGLP-18
12


 


XXXXX XXXXX XXXXX XXXXX XXXXX XXXXX GXXXX
Formula III
13


 


HAEGT FTSDV SSYLE ZQAAK EFIAW LVKGR-amide

14


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LYKGR G-amide

15


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GC

16


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LYKGR GC-amide
cgGLP-23
17


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LYKGR GCA-amide
cgGLP30 and
18



mgGLP 20



 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCG

19


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCG-amide
mgGLP-16
20


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSG
cgGLP-19
21


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSG-amide
cgGLP-24-29
22



mgGLP22, mgGLP-




33, mgGLP-27



 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSGG

23


 


HGEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSGG-amide
mgGLP-15
24


 


HZEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSG
cgGLP-20
25


 


HZEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GCSGG

26


 


HZEGT FTSDV SSYLE ZQAAK EFIAW LVKGR GGC
cgGLP-22
27


 


HGEGT FTSDV SSYLE [Aad]QAAK EFIAW LVKGR GCSG
cgGLP-21
28



Formula IV
29


 


HGEGT FTSDV SSYLE EQAAK EFIAW LVKGR G-amide
cycloE22-K26
30



(mgGLP-24)



 


HGEGT FTSDV SSYLE EQAAK EFIAW LVKGR GCA-amide

31


 


HGEGT FTSDV SSYLE EQAAK EFIAW LVKGR GCSG-amide
cycloE22-K26/
32



CSG



 


HGEGT FTSDV SEYLE KQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
33



Lys/Orn 38



 


HGEGT FTSDV SSELE GKAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]-
34



Lys/Orn 38



 


HGEGT FTSDV SSYEE GQKAK EFIAW LVKGR G[K/O/C]-amide
[Gly8]GLP1(7-37)
35



cyclo[Glu14-Lys18]38



 


HGEGT FTSDV SSYLE GQAKK EFIAW LVKGR G[K/O/C]-amide
[Gly8]GLP1(7-37)
36



cyc[Glu15-Lys19]



 


HGEGT FTSDV SSYLE EQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
37



Lys/Orn 38



 


HGEGT FTSDV SSYLE GEAAK KFIAW LVKGR G[K/O/C]-amide
[Gly8]GLP1(7-37)
38



cyclo[Glu17-Lys21]



 


HGEGT FTSDV SSYLE GQEAK EKIAW LVKGR G[K/O/C]-amide
[Gly8]GLP1(7-37)
39



cyclo[Glu18-Lys22]



 


HGEGT FTSDV SSYLE GQAEK EFKAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
40



Lys/Orn 38



 


HGEGT FTSDV SSYLE GQAAE EFIKW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
41



Lys/Orn 38



 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR G[K/O/C]-amide
[Gly8]cyclo[21-26]
42



GLP1(7-37)-




amide



 


HGEGT FTSDV SSYLE JQAAK EFIAW LVKGR G-amide
cycloJ22-K26
43


 


HGEGT FTSDV SSYLE JQAAK EFIAW LVKGR GCA-amide
cycloJ22-K26
44


 


HGEGT FTSDV SSYLE JQAAK EFIAW LVKGR GCSG-amide
cycloJ22-K26/
45



CSG



 


HGEGT FTSDV SJYLE KQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
46



Lys/Orn/Cys 38



 


HGEGT FTSDV SSJLE GKAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]-
47



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYJE GQKAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [20-24]-
48



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLJ GQAKK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-25]-
49



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE JQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
50



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GJAAK KFIAW LVKGR G[K/O/C]-amide
G8 cyclo [23-27]-
51



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQJAK EKIAW LVKGR G[K/O/C]-amide
G8 cyclo [24-28]-
52



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAJK EFKAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
53



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAJ EFIKW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
54



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLJ GQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-26]-
55



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE KQAAJ EFIAW LVKGR G-amide

56


 


HGEGT FTSDV SSYLE KQAAJ EFIAW LVKGR GCA-amide

57


 


HGEGT FTSDV SSYLE KQAAJ EFIAW LVKGR GCSG-amide

58


 


HGEGT FTSDV SKYLE JQAAK EFIAW LVKGR G[K/O/C]-amide

59


 


HGEGT FTSDV SSKLE GJAAK EFIAW LVKGR G[K/O/C]-amide

60


 


HGEGT FTSDV SSYKE GQJAK EFIAW LVKGR G[K/O/C]-amide

61


 


HGEGT FTSDV SSYLK GQAJK EFIAW LVKGR G[K/O/C]-amide

62


 


HGEGT FTSDV SSYLE KQAAJ EFIAW LVKGR G[K/O/C]-amide

63


 


HGEGT FTSDV SSYLE GKAAK JFIAW LVKGR G[K/O/C]-amide

64


 


HGEGT FTSDV SSYLE GQKAK EJIAW LVKGR G[K/O/C]-amide

65


 


HGEGT FTSDV SSYLE GQAKK EFJAW LVKGR G[K/O/C]-amide

66


 


HGEGT FTSDV SSYLE GQAAK EFIJW LVKGR G[K/O/C]-amide

67


 


HGEGT FTSDV SSYLK GQAAJ EFIAW LVKGR G[K/O/C]-amide

68


 


HGEGT FTSDV SSYLE EQAAO EFIAW LVKGR G-amide
cycloE22-O26
69


 


HGEGT FTSDV SSYLE EQAAO EFIAW LVKGR GCA-amide
cycloE22-O26
70


 


HGEGT FTSDV SSYLE EQAAO EFIAW LVKGR GCSG-amide
cycloE22-O26/
71



CSG



 


HGEGT FTSDV SEYLE OQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cycle [18-22]-
72



Lys/Orn/Cys 38



 


HGEGT FTSDV SSELE GOAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]-
73



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYEE GQOAK EFIAW LVKGR G[K/O/C]-amide
G8 cycle [20-24]-
74



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAOK EFIAW LVKGR G[K/O/C]-amide
G8 cycle [21-25]-
75



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE EQAAO EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
76



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GEAAK OFIAW LVKGR G[K/O/C]-amide
G8 cyclo [23-27]-
77



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQEAK EOIAW LVKGR G[K/O/C]-amide
G8 cycle [24-28]-
78



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAEK EFOAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
79



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAE EFIOW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
80



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAO EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-26]-
81



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE OQAAE EFIAW LVKGR G-amide

82


 


HGEGT FTSDV SSYLE OQAAE EFIAW LVKGR GCA-amide

83


 


HGEGT FTSDV SSYLE OQAAE EFIAW LVKGR GCSG-amide

84


 


HGEGT FTSDV SOYLE EQAAK EFIAW LVKGR G[K/O/C]-amide

85


 


HGEGT FTSDV SSOLE GEAAK EFIAW LVKGR G[K/O/C]-amide

86


 


HGEGT FTSDV SSYOE GQEAK EFIAW LVKGR G[K/O/C]-amide

87


 


HGEGT FTSDV SSYLO GQAEK EFIAW LVKGR G[K/O/C]-amide

88


 


HGEGT FTSDV SSYLE OQAAE EFIAW LVKGR G[K/O/C]-amide

89


 


HGEGT FTSDV SSYLE GOAAK EFIAW LVKGR G[K/O/C]-amide

90


 


HGEGT FTSDV SSYLE GQOAK EEIAW LVKGR G[K/O/C]-amide

91


 


HGEGT FTSDV SSYLE GQAOK EFEAW LVKGR G[K/O/C]-amide

92


 


HGEGT FTSDV SSYLE GQAAO EFIEW LVKGR G[K/O/C]-amide

93


 


HGEGT FTSDV SSYLO GQAAE EFIAW LVKGR G[K/O/C]-amide

94


 


HGEGT FTSDV SSYLE DQAAO EFIAW LVKGR G-amide
cycloD22-K26
95


 


HGEGT FTSDV SSYLE DQAAO EFIAW LVKGR GCA-amide
cycloD22-K26
96


 


HGEGT FTSDV SSYLE DQAAO EFIAW LVKGR GCSG-amide
cycloD22-K26/
97



CSG



 


HGEGT FTSDV SDYLE OQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
98



Lys/Orn/Cys 38



 


HGEGT FTSDV SSDLE GOAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]-
99



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYDE GQOAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [20-24]-
100



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLD GQAOK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-25]-
101



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE DQAAO EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
102



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GDAAK OFIAW LVKGR G[K/O/C]-amide
G8 cyclo [23-27]-
103



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQDAK EOIAW LVKGR G[K/O/C]-amide
G8 cyclo [24-28]-
104



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQADK EFOAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
105



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAD EFIOW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
106



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE OQAAD EFIAW LVKGR G-amide

107


 


HGEGT FTSDV SSYLE OQAAD EFIAW LVKGR GCA-amide

108


 


HGEGT FTSDV SSYLE OQAAD EFIAW LVKGR GCSG-amide

109


 


HGEGT FTSDV SOYLE DQAAK EFIAW LVKGR G[K/O/C]-amide

110


 


HGEGT FTSDV SSOLE GDAAK EFIAW LVKGR G[K/O/C]-amide

111


 


HGEGT FTSDV SSYOE GQDAK EFIAW LVKGR G[K/O/C]-amide

112


 


HGEGT FTSDV SSYLO GQADK EFIAW LVKGR G[K/O/C]-amide

113


 


HGEGT FTSDV SSYLE OQAAD EFIAW LVKGR G[K/O/C]-amide

114


 


HGEGT FTSDV SSYLE GOAAK DFIAW LVKGR G[K/O/C]-amide

115


 


HGEGT FTSDV SSYLE GQOAK EDIAW LVKGR G[K/O/C]-amide

116


 


HGEGT FTSDV SSYLE GQAOK EFDAW LVKGR G[K/O/C]-amide

117


 


HGEGT FTSDV SSYLE GQAAO EFIDW LVKGR G[K/O/C]-amide

118


 


HGEGT FTSDV SSYLE GQAAO EFIAW LVKGR G[K/O/C]-amide
G8 cyclo[21-26]-
119



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLO GQAAE EFIAW LVKGR G[K/O/C]-amide

120


 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo[21-26]-
121



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLK GQAAE EFIAW LVKGR G[K/O/C]-amide

122


 


HGEGT FTSDV SSYLJ GQAAK EFIAW LVKGR G[K/O/C]-amide

123


 


HGEGT FTSDV SSYLK GQAAJ EFIAW LVKGR G[K/O/C]-amide

124


 


HGEGT FTSDV SSYLD GQAAO EFIAW LVKGR G[K/O/C]-amide

125


 


HGEGT FTSDV SSYLO GQAAD EFIAW LVKGR G[K/O/C]-amide

126


 


HGEGT FTSDV SSYLD GQAAK EFIAW LVKGR G[K/O/C]-amide

127


 


HGEGT FTSDV SSYLK GQAAD EFIAW LVKGR G[K/O/C]-amide

128


 


HGEGT FTSDV SSYL[Cpa] GQAAO EFIAW LVKGR G[K/O/C]-amide

129


 


HGEGT FTSDV SSYLO GQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

130


 


HGEGT FTSDV SSYL[Cpa] GQAAK EFIAW LVKGR G[K/O/C]-amide

131


 


HGEGT FTSDV SSYLK GQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

132


 


HGEGT FTSDV SSYLB GQAAK EFIAW LVKGR G[K/O/C]-amide

133


 


HGEGT FTSDV SSYLK GQAAB EFIAW LVKGR G[K/O/C]-amide

134


 


HGEGT FTSDV SSYLE DQAAK EFIAW LVKGR G-amide
cycloD22-K26
135


 


HGEGT FTSDV SSYLE DQAAK EFIAW LVKGR GCA-amide
cycloD22-K26
136


 


HGEGT FTSDV SSYLE DQAAK EFIAW LVKGR GCSG-amide
cycloD22-K26/
137



CSG



 


HGEGT FTSDV SDYLE KQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
138



Lys/Orn/Cys 38



 


HGEGT FTSDV SSDLE GKAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]
139



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYDE GQKAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [20-24]-
140



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLD GQAKK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-25]-
141



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE DQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
142



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GDAAK KFIAW LVKGR G[K/O/C]-amide
G8 cyclo [23-27]-
143



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQDAK EKIAW LVKGR G[K/O/C]-amide
G8 cyclo [24-28]-
144



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQADK EFKAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
145



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAD EFIKW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
146



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE KQAAD EFIAW LVKGR G-amide

147


 


HGEGT FTSDV SSYLE KQAAD EFIAW LVKGR GCA-amide

148


 


HGEGT FTSDV SSYLE KQAAD EFIAW LVKGR GCSG-amide

149


 


HGEGT FTSDV SKYLE DQAAK EFIAW LVKGR G[K/O/C]-amide

150


 


HGEGT FTSDV SSKLE GDAAK EFIAW LVKGR G[K/O/C]-amide

151


 


HGEGT FTSDV SSYKE GQDAK EFIAW LVKGR G[K/O/C]-amide

152


 


HGEGT FTSDV SSYLK GQADK EFIAW LVKGR G[K/O/C]-amide

153


 


HGEGT FTSDV SSYLE KQAAD EFIAW LVKGR G[K/O/C]-amide

154


 


HGEGT FTSDV SSYLE GKAAK DFIAW LVKGR G[K/O/C]-amide

155


 


HGEGT FTSDV SSYLE GQKAK EDIAW LVKGR G[K/O/C]-amide

156


 


HGEGT FTSDV SSYLE GQAKK EFDAW LVKGR G[K/O/C]-amide

157


 


HGEGT FTSDV SSYLE GQAAK EFIDW LVKGR G[K/O/C]-amide

158


 


HGEGT FTSDV SSYLE KQAAE EFIAW LVKGR G-amide
GLP1(7-37)
159



cyclo[Lys16-Glu20]



 


HGEGT FTSDV SSYLE KQAAE EFIAW LVKGR GCA-amide
cycloK22-E26
160


 


HGEGT FTSDV SSYLE KQAAE EFIAW LVKGR GCSG-amide
cycloK22-E26/
161



CSG



 


HGEGT FTSDV SKYLE EQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
162



Lys/Orn/Cys 38



 


HGEGT FTSDV SSKLE GEAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [19-23]-
163



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYKE GQEAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [20-24]-
164



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLK GQAEK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [21-25]-
165



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE KQAAE EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [22-26]-
166



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GKAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [23-27]-
167



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQKAK EEIAW LVKGR G[K/O/C]-amide
G8 cyclo [24-28]-
168



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAKK EFEAW LVKGR G[K/O/C]-amide
G8 cyclo [25-29]-
169



Lys/Orn/Cys 38



 


HGEGT FTSDV SSYLE GQAAK EFIEW LVKGR G[K/O/C]-amide
G8 cyclo [26-30]-
170



Lys/Orn/Cys 38



 


HGEGT FTSDV SS[Cpa]LE GQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo[19-26]-
171



Lys/Orn/Cys 38



 


HGEGT FTSDV SSKLE GQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

172


 


HGEGT FTSDV SS[Cpa]LE GQAAO EFIAW LVKGR G[K/O/C]-amide
G8 cyclo[19-26]-
173



Lys/Orn/Cys 38



 


HGEGT FTSDV SSOLE GQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

174


 


HGEGT FTSDV SSYLE BQAAK EFIAW LVKGR G-amide

175


 


HGEGT FTSDV SSYLE BQAAK EFIAW LVKGR GCA-amide

176


 


HGEGT FTSDV SSYLE BQAAK EFIAW LVKGR GCSG-amide

177


 


HGEGT FTSDV SBYLE KQAAK EFIAW LVKGR G[K/O/C]-amide
G8 cyclo [18-22]-
178



Lys/Orn/Cys 38



 


HGEGT FTSDV SSBLE GKAAK EFIAW LVKGR G[K/O/C]-amide

179


 


HGEGT FTSDV SSYBE GQKAK EFIAW LVKGR G[K/O/C]-amide

180


 


HGEGT FTSDV SSYLB GQAKK EFIAW LVKGR G[K/O/C]-amide

181


 


HGEGT FTSDV SSYLE BQAAK EFIAW LVKGR G[K/O/C]-amide

182


 


HGEGT FTSDV SSYLE GBAAK KFIAW LVKGR G[K/O/C]-amide

183


 


HGEGT FTSDV SSYLE GQBAK EKIAW LVKGR G[K/O/C]-amide

184


 


HGEGT FTSDV SSYLE GQABK EFKAW LVKGR G[K/O/C]-amide

185


 


HGEGT FTSDV SSYLE GQAAB EFIKW LVKGR G[K/O/C]-amide

186


 


HGEGT FTSDV SKYLE BQAAK EFIAW LVKGR G[K/O/C]-amide

187


 


HGEGT FTSDV SSYLE KQAAB EFIAW LVKGR G-amide

188


 


HGEGT FTSDV SSYLE KQAAB EFIAW LVKGR GCA-amide

189


 


HGEGT FTSDV SSYLE KQAAB EFIAW LVKGR GCSG-amide

190


 


HGEGT FTSDV SSKLE GBAAK EFIAW LVKGR G[K/O/C]-amide

191


 


HGEGT FTSDV SSYKE GQBAK EFIAW LVKGR G[K/O/C]-amide

192


 


HGEGT FTSDV SSYLK GQABK EFIAW LVKGR G[K/O/C]-amide

193


 


HGEGT FTSDV SSYLE KQAAB EFIAW LVKGR G[K/O/C]-amide

194


 


HGEGT FTSDV SSYLE GKAAK BFIAW LVKGR G[K/O/C]-amide

195


 


HGEGT FTSDV SSYLE GQKAK EBIAW LVKGR G[K/O/C]-amide

196


 


HGEGT FTSDV SSYLE GQAKK EFBAW LVKGR G[K/O/C]-amide

197


 


HGEGT FTSDV SSYLE GQAAK EFIBW LVKGR G[K/O/C]-amide

198


 


HGEGT FTSDV SSYLE [Cpa]QAAK EFIAW LVKGR G-amide

199


 


HGEGT FTSDV SSYLE [Cpa]QAAK EFIAW LVKGR GCA-amide

200


 


HGEGT FTSDV SSYLE [Cpa]QAAK EFIAW LVKGR GCSG-amide

201


 


HGEGT FTSDV S[Cpa]YLE KQAAK EFIAW LVKGR G[K/O/C]-amide

202


 


HGEGT FTSDV SS[Cpa]LE GKAAK EFIAW LVKGR G[K/O/C]-amide

203


 


HGEGT FTSDV SSY[Cpa]E GQKAK EFIAW LVKGR G[K/O/C]-amide

204


 


HGEGT FTSDV SSYL[Cpa] GQAKK EFIAW LVKGR G[K/O/C]-amide

205


 


HGEGT FTSDV SSYLE [Cpa]QAAK EFIAW LVKGR G[K/O/C]-amide

206


 


HGEGT FTSDV SSYLE G[Cpa]AAK KFIAW LVKGR G[K/O/C]-amide

207


 


HGEGT FTSDV SSYLE GQ[Cpa]AK EKIAW LVKGR G[K/O/C]-amide

208


 


HGEGT FTSDV SSYLE GQA[Cpa]K EFKAW LVKGR G[K/O/C]-amide

209


 


HGEGT FTSDV SSYLE GQAA[Cpa] EFIKW LVKGR G[K/O/C]-amide

210


 


HGEGT FTSDV SKYLE [Cpa]QAAK EFIAW LVKGR G[K/O/C]-amide

211


 


HGEGT FTSDV SSYLE KQAA[Cpa] EFIAW LVKGR G-amide

212


 


HGEGT FTSDV SSYLE KQAA[Cpa] EFIAW LVKGR GCA-amide

213


 


HGEGT FTSDV SSYLE KQAA[Cpa] EFIAW LVKGR GCSG-amide

214


 


HGEGT FTSDV SSKLE G[Cpa]AAK EFIAW LVKGR G[K/O/C]-amide

215


 


HGEGT FTSDV SSYKE GQ[Cpa]AK EFIAW LVKGR G[K/O/C]-amide

216


 


HGEGT FTSDV SSYLK GQA[Cpa]K EFIAW LVKGR G[K/O/C]-amide

217


 


HGEGT FTSDV SSYLE KQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

218


 


HGEGT FTSDV SSYLE GKAAK [Cpa]FIAW LVKGR G[K/O/C]-amide

219


 


HGEGT FTSDV SSYLE GQKAK E[Cpa]IAW LVKGR G[K/O/C]-amide

220


 


HGEGT FTSDV SSYLE GQAKK EF[Cpa]AW LVKGR G[K/O/C]-amide

221


 


HGEGT FTSDV SSYLE GQAAK EFI[Cpa]W LVKGR G[K/O/C]-amide

222


 


HGEGT FTSDV SSYLE [Cpa]QAAO EFIAW LVKGR G-amide

223


 


HGEGT FTSDV SSYLE [Cpa]QAAO EFIAW LVKGR GCA-amide

224


 


HGEGT FTSDV SSYLE [Cpa]QAAO EFIAW LVKGR GCSG-amide

225


 


HGEGT FTSDV S[Cpa]YLE OQAAK EFIAW LVKGR G[K/O/C]-amide

226


 


HGEGT FTSDV SS[Cpa]LE GOAAK EFIAW LVKGR G[K/O/C]-amide

227


 


HGEGT FTSDV SSY[Cpa]E GQOAK EFIAW LVKGR G[K/O/C]-amide

228


 


HGEGT FTSDV SSYL[Cpa] GQAOK EFIAW LVKGR G[K/O/C]-amide

229


 


HGEGT FTSDV SSYLE [Cpa]QAAO EFIAW LVKGR G[K/O/C]-amide

230


 


HGEGT FTSDV SSYLE G[Cpa]AAK OFIAW LVKGR G[K/O/C]-amide

231


 


HGEGT FTSDV SSYLE GQ[Cpa]AK EOIAW LVKGR G[K/O/C]-amide

232


 


HGEGT FTSDV SSYLE GQA[Cpa]K EFOAW LVKGR G[K/O/C]-amide

233


 


HGEGT FTSDV SSYLE GQAA[Cpa] EFIOW LVKGR G[K/O/C]-amide

234


 


HGEGT FTSDV SOYLE [Cpa]QAAK EFIAW LVKGR G[K/O/C]-amide

235


 


HGEGT FTSDV SSYLE OQAA[Cpa] EFIAW LVKGR G-amide

236


 


HGEGT FTSDV SSYLE OQAA[Cpa] EFIAW LVKGR GCA-amide

237


 


HGEGT FTSDV SSYLE OQAA[Cpa] EFIAW LVKGR GCSG-amide

238


 


HGEGT FTSDV SSOLE G[Cpa]AAK EFIAW LVKGR G[K/O/C]-amide

239


 


HGEGT FTSDV SSYOE GQ[Cpa]AK EFIAW LVKGR G[K/O/C]-amide

240


 


HGEGT FTSDV SSYLO GQA[Cpa]K EFIAW LVKGR G[K/O/C]-amide

241


 


HGEGT FTSDV SSYLE OQAA[Cpa] EFIAW LVKGR G[K/O/C]-amide

242


 


HGEGT FTSDV SSYLE GOAAK [Cpa]FIAW LVKGR G[K/O/C]-amide

243


 


HGEGT FTSDV SSYLE GQOAK E[Cpa]IAW LVKGR G[K/O/C]-amide

244


 


HGEGT FTSDV SSYLE GQAOK EF[Cpa]AW LVKGR G[K/O/C]-amide

245


 


HGEGT FTSDV SSYLE GQAAO10 EFI[Cpa]W LVKGR G[K/O/C]-amide

246


 


A HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
A-GLP-1
247


 


G HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
G-GLP-1
248


 


P HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
P-CLP-1
249


 


S HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
S-CLP-1
250


 


T HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
T-GLP-1
251


 


V HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
V-GLP-1
252


 


MQ HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MQ-GLP1
253


 


MR HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MR-GLP1
254


 


MK HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MK-GLP1
255


 


M HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
M-GLP1
256


 


MH HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MH-GLP1
257


 


MHH HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MHH-GLP1
258


 


MY HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MY-GLP1
259


 


MI HAECT FTSDV SSYLE GQAAK EFIAW LVKGR
MI-GLP1
260


 


MD HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MD-GLP1
261


 


ML HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
ML-GLP1
262


 


MN HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MN-GLP1
263


 


ME HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
ME-GLP1
264


 


MW HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MW-GLP1
265


 


MF HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MF-GLP1
266


 


MM HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR
MM-GLP1
267


 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR GCA-amide

268


 


HGEGT FTSDV SSYLE GQAAK EFIAW LVKGG G

269


 


HGEGT FTSDV SSYLE GQAAK EFIAW LKNGG G

270


 


HGEGT FTSDL SKQME EEAVR LFIEW LKNGG-amide

271


 


HGEGT FTSDL SKQME ZEAVR LFIEW LKNGG-amide

272


 


HGEGT FTSDV SSYLE GQAAK EFIAW L

273


 


HGEGT FTSDV SSYLE EQAKK EFIAW LVKGR C-amide

274


 


HGEGT FTSDV SSYLE EQAKK EFIAW LVKGR GCGS-amide

275


 


HGEGT FTSDV SSYLE GQAKK EFIAW LEKGR K-amide

277


 


HGEGT FTSDV SSYLE EQAADab EFIAW LVKGR G-amide

279


 


HGEGT FTSDV SSYLE EQAADab EFIAW LVKGR GCA-amide

280


 


HGEGT FTSDV SSYLE EQAADab EFIAW LVKGR GCSG-amide

281


 


HGEGT FTSDV SEYLE DabQAAK EFIAW LVKGR G[K/O/C]-amide

282


 


HGEGT FTSDV SSELE GDabAAK EFIAW LVKGR G[K/O/C]-amide

283


 


HGEGT FTSDV SSYEE GQDabAK EFIAW LVKGR G[K/O/C]-amide

284


 


HGEGT FTSDV SSYLE GQADabK EFIAW LVKGR G[K/O/C]-amide

285


 


HGEGT FTSDV SSYLE EQAADab EFIAW LVKGR G[K/O/C]-amide

286


 


HGEGT FTSDV SSYLE GEAAK DabFIAW LVKGR G[K/O/C]-amide

287


 


HGEGT FTSDV SSYLE GQEAK EDabIAW LVKGR G[K/O/C]-amide

288


 


HGEGT FTSDV SSYLE GQAEK EFDabAW LVKGR G[K/O/C]-amide

289


 


HGEGT FTSDV SSYLE GQAAE EFIDabW LVKGR G[K/O/C]-amide

290


 


HGEGT FTSDV SSYLE GQAADab EFIAW LVKGR G[K/O/C]-amide

291


 


HGEGT FTSDV SSYLE DabQAAE EFIAW LVKGR G-amide

292


 


HGEGT FTSDV SSYLE DabQAAE EFIAW LVKGR GCA-amide

293


 


HGEGT FTSDV SSYLE DabQAAE EFIAW LVKGR GCSG-amide

294


 


HGEGT FTSDV SDabYLE EQAAK EFIAW LVKGR G[K/O/C]-amide

295


 


HGEGT FTSDV SSDabLE GEAAK EFIAW LVKGR G[K/O/C]-amide

296


 


HGEGT FTSDV SSYDabE GQEAK EFIAW LVKGR G[K/O/C]-amide

297


 


HGEGT FTSDV SSYLDab GQAEK EFIAW LVKGR G[K/O/C]-amide

298


 


HGEGT FTSDV SSYLE DabQAAE EFIAW LVKGR G[K/O/C]-amide

299


 


HGEGT FTSDV SSYLE GDabAAK EFIAW LVKGR G[K/O/C]-amide

300


 


HGEGT FTSDV SSYLE GQDabAK EEIAW LVKGR G[K/O/C]-amide

301


 


HGEGT FTSDV SSYLE GQADabK EFEAW LVKGR G[K/O/C]-amide

302


 


HGEGT FTSDV SSYLE GQAADab EFIEW LVKGR G[K/O/C]-amide

303


 


HGEGT FTSDV SSYLDab GQAAE EFIAW LVKGR G[K/O/C]-amide

304









The term “GLP-1 analog” also includes variants, fragments and derivatives of the foregoing GLP-1 analogs that are functional equivalents to one of the foregoing GLP-1 analogs in that the variant, fragment or derivative has a similar amino acid sequence (e.g. comprising conservative substitutions) and retains, to some extent, at least one activity of the GLP-1 analog.
“GLP-1 variants” include polypeptides that are “substantially identical” (see definition supra) to the GLP-1 analogs in the families listed above and in Table 2. Such variants include proteins having amino acid alterations such as deletions, insertions and/or substitutions. Typically, such alterations are conservative in nature (see, e.g., Creighton, 1984, Proteins, W.H. Freeman and Company and discussion supra) such that the activity of the variant polypeptide is substantially similar to one of the GLP-1 analogs that are disclosed herein (e.g., has a GLP-1 activity such as insulinotropic activity). In the case of substitutions, the amino acid replacing another amino acid usually has similar structural and/or chemical properties. Insertions and deletions relative to the GLP-1 analogs that are listed in the families above are typically involve 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids. In other instances, there are 1, 2, 3, 4 or 5 amino acid insertions or deletions.
A GLP-1 variant can have at least 75%, preferably at least 85%, more preferably at least 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog as described herein (i.e., the analogs in the different families listed above and those listed in Table 2), provided the variant still has a GLP-1 activity. For example, a variant can have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of SEQ ID NO:7 or 8, provided that amino acid Xaa8, Xaa23 or any of Xaa38 to Xaa45 are unaltered. Other variants have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of SEQ ID NO:11 or 12, provided that amino acid Xaa8 or any of Xaa38 to Xaa41 are unaltered. Certain other variants have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of any one of SEQ ID NO:16-28, provided that amino acid Xaa8, Xaa22, or any of Xaa38 to Xaa41 when present, are unaltered. Still other variants have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of any one of SEQ ID NO: 30 to 246 provided that two amino acids selected from Xaa18, Xaa19, Xaa20, Xaa21, Xaa22, Xaa23, Xaa24, Xaa25, Xaa26, Xaa27, Xaa28, Xaa29, and Xaa30 are joined to form a ring. Still other variants have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of any one of SEQ ID NO: 247 to 267 with no more than 1, 2, 3, 4, or 5 conservative amino acid substitutions, provided that the amino acids Xaa4, Xaa5, or Xaa6, when present, are unaltered. Still other variants have at least 75%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid identity with a GLP-1 analog of any one of SEQ ID NO: 268 to 275 with no more than 1, 2, 3, 4, or 5 conservative amino acid substitutions.
In certain embodiments, a GLP-1 variant comprises SEQ ID NO:7 or 8 with no more than 1, 2, 3, 4 or 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8, Xaa23, or any of Xaa38 to Xaa45 and the variant has a GLP-1 activity (e.g., insulinotropic activity).
In certain embodiments, a GLP-1 variant comprises SEQ ID NO:11 or 12 with no more than 1, 2, 3, 4 or 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8 or any of Xaa38 to Xaa41 and the variant has a GLP-1 activity (e.g., insulinotropic activity).
In certain embodiments, a GLP-1 variant comprises any one of SEQ ID NO: 16-28 with no more than 1, 2, 3, 4, or 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa8, Xaa22, or any of Xaa38 to Xaa41.
In certain embodiments, a GLP-1 variant comprises any one of SEQ ID NO: 30 to 246 with no more than 1, 2, 3, 4 or 5 conservative amino acid substitutions, provided that two amino acids selected from Xaa18, Xaa19, Xaa20, Xaa21, Xaa22, Xaa23, Xaa24, Xaa25, Xaa26, Xaa27, Xaa28, Xaa29, and Xaa30 are joined to form a ring.
In certain embodiments, a GLP-1 variant comprises any one of SEQ ID NO: 247 to 267 with no more than 1, 2, 3, 4, or 5 conservative amino acid substitutions, provided that the conservative amino acid substitutions are not at amino acid Xaa4, Xaa5, or Xaa6.
A “GLP-1 derivative” as used herein refers to one of the GLP-1 analogs listed in the families above and in Table 2 in which one or more amino acids has been: 1) substituted with the corresponding D-amino acid, 2) altered to a non-naturally occurring amino acid residue, and/or 3) chemically modified. Examples of chemical modification include, but are not limited to alkylation, acylation, deamidation, esterification, phosphorylation, and glycosylation of the peptide backbone and/or amino acid side chains.
A “GLP-1 fragment” refers to truncated forms of the GLP-1 analogs listed in the families above or in Table 2 or variants or derivatives thereof. The fragments typically are truncated by 1, 2, 3, 4 or 5 amino acids relative to the GLP-1 analogs set forth in the families above. Truncation can be at either the amino and/or carboxyl terminus.
GLP-1 compounds as provided herein can be complexed with suitable divalent metal cations. Divalent metal complexes of GLP-1 compounds as provided herein can be administered subcutaneously as suspensions, and have a decreased rate of release in vivo, because such complexes of GLP-1 compounds as provided herein are generally insoluble in aqueous solutions of about physiological pH. Non-limiting examples of divalent metal cations suitable for complexing with a GLP-1 compound as provided herein include Zn++, Mn++, Fe++, Ca++, Co++, Cd++, Ni++, and the like. Divalent metal complexes of GLP-1 compounds as provided herein can be obtained, for example, using techniques as described in WO 01/98331, which is incorporated herein by reference.
The GLP-1 compounds that are provided may simply comprise a GLP-1 analog as disclosed herein or include an additional component, typically chosen to extend the half-life of the analog in vivo. Some GLP-1 compounds, for instance, are pegylated to extend the half-life of the molecule and/or reduce clearance. Other GLP-1 analogs are modified with a water-soluble polymer other than PEG. Suitable water-soluble polymers or mixtures thereof include, but are not limited to, N-linked or O-linked carbohydrates, sugars (e.g. various polysaccharides such as chitosan, xanthan gum, cellulose and its derivatives, acacia gum, karaya gum, guar gum, carrageenan, and agarose), phosphates, polyethylene glycol (PEG) (including the forms of PEG that have been used to derivatize proteins, including mono-(C1-C10), alkoxy-, or aryloxy-polyethylene glycol), monomethoxy-polyethylene glycol, dextran (such as low molecular weight dextran of, for example, about 6 kD), cellulose, or other carbohydrate based polymers, poly-(N-vinyl pyrrolidone) polyethylene glycol, propylene glycol homopolymers, polypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols (e.g., glycerol), polyoxyethylene-polyoxypropylene, polyvinyl alcohol, and copolymers of the foregoing.
The GLP-1 compound, for instance, can include various components chosen to increase the in vivo half-life of the GLP-1 analog.
Yet another option is to fuse the GLP-1 analog to another polypeptide or polypeptide domain. Thus, the GLP-1 compound can be a fusion protein in which the GLP-1 analogs disclosed herein are fused to various proteins such as the Fc region of an immunoglobulin, transferrin, or a blood component such as serum albumin (e.g., human serum albumin), or fragments of these proteins. Exemplary amino acid sequences for human albumin are discussed in Lawn et al., 1981, Nucleic Acids Research 9:6102-6114; Meloun et al., 1975, FEBS Lett. 58:136; and Minghetti et al., 1986, J. Biol. Chem. 261:6747). Such fusion proteins can be prepared using standard recombinant techniques such as those described herein and as known in the art.
Fusions can be made either at the amino-terminus, at the carboxyl-terminus of the GLP-1 analog or at both terminii. Fusions may be direct with no linker or adapter molecule or may be through a linker or adapter molecule. A linker or adapter molecule may be one or more amino acid residues, typically from about 20 to about 50 amino acid residues. A linker or adapter molecule may also be designed with a cleavage site for a DNA restriction endonuclease or for a protease to allow for the separation of the fused moieties. It will be appreciated that once constructed, the fusion polypeptides can be derivatized according to the methods described herein.
B. Pegylation
In certain embodiments, a GLP-1 analog as provided herein is pegylated. As used herein, the terms “pegylated” and “pegylation” have their general meaning in the art and refer generally, for example, to the process of chemically modifying a GLP-1 analog as described herein by covalent attachment of one or more molecules of polyethylene glycol or a derivative thereof, such as by reacting a polyalkylene glycol, preferably an activated polyalkylene glycol, with a suitable reactive group or moiety such as an amino acid, e.g. lysine, to form a covalent bond. Although “pegylation” is often carried out using polyethylene glycol or derivatives thereof, such as methoxy polyethylene glycol, the term as used herein also includes any other useful polyalkylene glycol, such as, for example polypropylene glycol. As used herein, the term “PEG” refers to polyethylene glycol and its derivatives as understood in the art (see for example U.S. Pat. Nos. 5,445,090, 5,900,461, 5,932,462, 6,436,386, 6,448,369, 6,437,025, 6,448,369, 6,495,659, 6,515,100, and 6,514,491).
GLP-1 analogs as provided herein can be pegylated at random positions within the peptide, or at predetermined positions within the molecule and can include one or more attached molecules, typically one, two, three, four, or five molecules.
The polymer used for peglylation can be of any molecular weight, and can be branched or unbranched. For polyethylene glycol, generally the molecular weight is between about 1 kDa and about 100 kDa (the term “about” indicating that in preparations of polyethylene glycol, some molecules will weigh more, some less, than the stated molecular weight) for ease in handling and manufacturing. For example, the polyethylene glycol can have an average molecular weight of about 1, 5, 10, 15, 20, 25, 30, 35, 40, 50, 60, 70, 80, 90 or 100 kDa. Some GLP-1 compounds are pegylated with one or more molecules that are less than 40, 30 or 20 kDa. Other sizes can be used, depending on the desired therapeutic profile (e.g., the duration of circulating half-life desired, the effects, if any on biological activity, the ease in handling, the degree or lack of antigenicity and other known effects of the polyethylene glycol to a therapeutic protein or analog).
The PEG molecules (or other water-soluble polymers described herein) should be attached to the GLP-1 analogs with consideration of effects on functional or antigenic domains of the polypeptides or proteins. For example, PEG can be covalently bound through amino acid residues via a reactive group, such as, a free amino, carboxyl group or sulfhydryl group. Reactive groups are those to which an activated PEG molecule can be bound. Examples of naturally occurring amino acid residues having a free amino group include lysine residues and the N-terminal amino acid residues; those having a free carboxyl group include aspartic acid residues glutamic acid residues and the C-terminal amino acid residue. Sulfhydryl groups (e.g., on cysteine) can also be used as a reactive group for attaching the polyethylene glycol molecules. PEG molecules may also be incorporated by conjugation to reactive functional groups introduced synthetically as unnatural amino acids or alternatively, PEG may be conjugated to the peptide using orthogonal methods during peptide synthesis.
A variety of strategies can be used for pegylation of a GLP-1 analog (see, e.g., WO 2005/042027, WO 2004/060386, Veronese, 2001, Biomaterials 22:405-417; Roberts et al., 2002, Advanced Drug Delivery Reviews 54:459-476; see also EP 0 401 384 (coupling PEG to G-CSF), and Malik et al., 1992, Exp. Hematol. 20:1028-1035 (reporting pegylation of GM-CSF using tresyl chloride). For example, PEG can be linked to GLP-1 analogs via covalent bonds to lysine, histidine, aspartic acid, glutamic acid, or cysteine residues. One or more reaction chemistries can be employed to attach polyethylene glycol to specific amino acid residues (e.g., lysine, histidine, aspartic acid, glutamic acid, or cysteine) of the GLP-1 analog or to more than one type of amino acid residue (e.g., lysine, histidine, aspartic acid, glutamic acid, cysteine and combinations thereof) of the GLP-1 analog.
One such strategy is to link a PEG to a cysteine that is part of the GLP-1 analog. As shown supra, several of the GLP-1 analogs that are provided include a cysteine residue at or near the C-terminus at which PEG can be attached. Attachment to cysteine can be achieved using various approaches. One common method involves reacting a PEG-maleimide to the thiol group of cysteine.
Another approach is to attach PEG to the carboxy-terminus of the GLP-1 analog via enzymatic coupling (see, e.g., U.S. Pat. No. 4,343,898).
PEG can be attached to the GLP-1 analog either directly or by an intervening linker. Linkerless systems for attaching polyethylene glycol to proteins and polypeptides are described in Delgado et al., Crit. Rev. Thera. Drug Carrier Sys. 9:249-304, 1992; Francis et al., 1998, Intern. J. of Hematol. 68:1-18; U.S. Pat. No. 4,002,531; U.S. Pat. No. 5,349,052; WO 95/06058; and WO 98/32466.
One method for attaching PEG directly to amino acid residues of GLP-1 analogs without an intervening linker employs tresylated MPEG, which is produced by the modification of monmethoxy polyethylene glycol (MPEG) using tresylchloride (ClSO2 CH2 CF3). Upon reaction of the protein or polypeptide with tresylated MPEG, polyethylene glycol is directly attached to amine groups of the protein or polypeptide. Thus, GLP-1 analog-PEG conjugates can be produced by reacting GLP-1 analogs with a PEG molecule having a 2,2,2-trifluoreothane sulphonyl group.
PEG can also be attached to GLP-1 analogs using a number of different intervening linkers. For example, U.S. Pat. No. 5,612,460 discloses urethane linkers for connecting PEG to GLP-1 analogs. GLP-1 analog-PEG conjugates wherein the PEG is attached to the GLP-1 analog by a linker can also be produced by reaction of GLP-1 analogs with compounds such as MPEG-succinimidylsuccinate, MPEG activated with 1,1′-carbonyldiimidazole, MPEG-2,4,5-trichloropenylcarbonate, MPEG-.rho.-nitrophenolcarbonate, and various MPEG-succinate derivatives. A number of additional polyethylene glycol derivatives and reaction chemistries for attaching polyethylene glycol to proteins and polypeptides are described in WO 98/32466.
The number of polyethylene glycol moieties attached to each GLP-1 analog (i.e., the degree of substitution) can also vary. For example, the pegylated GLP-1 analogs can be linked, on average, to 1, 2, 3, 4, or 5, or more polyethylene glycol molecules. Methods for determining the degree of substitution are discussed, for example, in Delgado et al., 1992, Crit. Rev. Thera. Drug Carrier Sys. 9:249-304.
To effect covalent attachment of PEG to a GLP-1 analog, the hydroxyl end groups of the PEG must first be converted into reactive functional groups. This process is frequently referred to as “activation” and the product is called “activated PEG.” Methoxy polyethylene glycol (mPEG), distally capped with a reactive functional group is often used. One such activated PEG is succinimidyl succinate derivative of PEG (SS-PEG). See also Abuchowski et al., 1984, Cancer Biochem. Biophys. 7:175-186; and U.S. Pat. No. 5,122,614 which discloses polyethylene glycol-N-succinimide carbonate and its preparation.
The Example section below provides detailed guidance on strategies for pegylating the GLP-1 compounds that are disclosed herein.
IV. Nucleic Acids and Methods of Preparing the GLP-1 Compounds and Analogs
The GLP-1 analogs that are provided can be produced using various methods that are established in the art, including chemical synthesis and/or recombinant methods.
Different strategies for attaching PEG to the peptide have been set forth above.
If the GLP-1 analog is prepared by chemical synthesis, such methods typically involve solid-state approaches, but can also utilize solution-based chemistries or combinations of solid-state and solution approaches. The Example section below includes detailed guidance on the synthesis of the GLP-1 compounds described herein, including the various cyclic compounds that include a ring.
Examples of solid-state methodologies for synthesizing proteins are described by Merrifield, 1964, J. Am. Chem. Soc. 85:2149; and Houghton, 1985, Proc. Natl. Acad. Sci. 82:5132. Fragments of the GLP-1 analog can also be synthesized and then joined together. Methods for conducting such reactions are described by Grant, 1992, Synthetic Peptides: A User Guide, W.H. Freeman and Co., N.Y.; and in “Principles of Peptide Synthesis,” 1993 (Bodansky and Trost, ed.), Springer-Verlag, Inc. N.Y. Further guidance on methods for preparing peptides sufficient to guide the skilled practitioner in the preparation of the GLP-1 analogs described herein is provided by: Liu et al., 1996, J. Am. Chem. Soc. 118:307-312; Kullmann, 1987, Enzymatic Peptide Synthesis, CRC Press, Boca Raton, Fla., pp. 41-59; Dryland et al., 1986, J. Chem. Soc., Perkin Trans. 1:125-137; Jones, 1991, The Chemical Synthesis of Peptides, Clarendon Press; and Bodanszky, M. and Bodanszky A., 1994, The Practice of Peptide Synthesis, 2nd Ed., Springer-Verlag).
Alternatively, the GLP-1 analogs can be prepared using established recombinant techniques. For example, a GLP-1 analog can be expressed in a host cell by introducing into the cell a recombinant nucleic acid construct encoding a GLP-1 analog. According to such embodiments, the cells are transformed with the recombinant nucleic acid construct using any method for introducing polynucleotides into a host cell, including, for example packaging the polynucleotide in a virus (or into a viral vector) and transducing a host cell with the virus (or vector), or by transfection procedures known in the art, as exemplified by U.S. Pat. Nos. 4,399,216, 4,912,040, 4,740,461, and 4,959,455 (which are hereby incorporated herein by reference for any purpose). The transformation procedure used may depend upon the cell to be transformed. Methods for introduction of heterologous polynucleotides into mammalian cells are well known in the art and include, but are not limited to, dextran-mediated transfection, calcium phosphate precipitation, polybrene mediated transfection, protoplast fusion, electroporation, encapsulation of the polynucleotide(s) in liposomes, mixing nucleic acid with positively-charged lipids, and direct microinjection of the DNA into cells and cell nuclei.
A nucleic acid molecule encoding all or a functional portion of the GLP-1 analog amino acid sequence can be inserted into an appropriate expression vector using conventional recombinant genetic techniques. The vector is typically selected to be functional in the particular host cell employed (i.e., the vector is compatible with the host cell machinery, permitting amplification and/or expression of the gene). For a review of expression vectors, see Nolan and Shatzman, 1998, Curr. Opin. Biotechnol. 9:447-450.
Expression vectors may be constructed from a convenient starting vector such as a commercially available vector. Such vectors may or may not contain all of the desired flanking sequences. Where one or more of the flanking sequences described herein are not already present in the vector, they may be individually obtained and ligated into the vector. Methods used for obtaining each of the flanking sequences are well known to one skilled in the art.
After the vector has been constructed and a nucleic acid molecule encoding GLP-1 analog has been inserted into the proper site of the vector, the completed vector may be inserted into a suitable host cell for amplification and/or polypeptide expression. The transformation of an expression vector encoding GLP-1 analog into a selected host cell may be accomplished by well-known methods including methods such as transfection, infection, calcium chloride, electroporation, microinjection, lipofection, DEAE-dextran method, or other known techniques as described above. The method selected will in part be a function of the type of host cell to be used. These methods and other suitable methods are well known to the skilled artisan, and are set forth, for example, in Sambrook et al., 2001, MOLECULAR CLONING: A LABORATORY MANUAL, 3d ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
A host cell, when cultured under appropriate conditions, synthesizes a GLP-1 analog that can subsequently be collected from the culture medium (if the host cell secretes it into the medium) or directly from the host cell producing it (if it is not secreted) if collection of the protein is desired. Selection of an appropriate host cell will depend upon a number of different factors, such as desired expression levels, polypeptide modifications that are desirable or necessary for activity (such as glycosylation or phosphorylation) and ease of folding into a biologically-active molecule.
Mammalian cell lines available as host cells for expression are well known in the art and include, but are not limited to, many immortalized cell lines available from the American Type Culture Collection (ATCC), such as Chinese hamster ovary (CHO) cells, HeLa cells, baby hamster kidney (BHK) cells, monkey kidney cells (COS), human hepatocellular carcinoma cells (e.g., Hep G2), and a number of other cell lines. In certain embodiments, cell lines may be selected through determining which cell lines have high expression levels of GLP-1 analog.
V. Exemplary Therapeutic Utilities
In view of the various activities associated with GLP-1 (see Background), the GLP-1 compounds that are described herein can be used generally to achieve one or more of the following biological activities: 1) stimulate insulin release, 2) reduce blood glucose levels, 3) increase plasma insulin levels, 4) stimulate transcription of β-cell-specific genes (e.g., GLUT-1 transporter, insulin receptor and hexokinase-1), 5) increase β-cell mass by inhibiting β-cell apoptosis and increasing β-cell proliferation and replication, 6) induce satiety thereby reducing food intake and promoting weight loss, 7) reduce gastric secretion, 8) delay gastric emptying, and 9) reduce gastric motility.
The GLP-1 compounds can thus be used to treat a number of different forms of diabetes or diseases closely related thereto, including but not limited to, diabetes mellitus of Type I or Type II, impaired glucose tolerance, insulin resistance, latent autoimmune diabetes Adult (LADA), gestational diabetes, metabolic syndrome, and maturity-onset diabetes of the young (MODY). Thus, the GLP-1 compounds can be used to treat individuals having decreased sensitivity to insulin due to infection, stress, stroke, or due to a decreased sensitivity induced during pregnancy. Other types of diabetes that can be treated are those in which diabetes is linked to another endocrine disease such as glucagonoma, primary aldosteronism, Cushing's syndrome and somatostatinoma, or diabetes that arises due to administration of certain drugs or hormones (e.g., estrogen-containing pharmaceuticals, psychoactive drugs, antihypertensive drugs, and thiazide diuretics).
The GLP-1 compounds can also be used to treat various coronary diseases and diseases associated with lipid disorders, including, for instance, hypertension, coronary artery disease, hyperlipidemia, cardiovascular disease, atherosclerosis and hypercholesteremia and myocardial infarction.
Bone disorders, osteoporosis and other related diseases can also be treated with the GLP-1 compositions.
Additional diseases that can be treated with the GLP-1 compounds include: obesity, irritable bowel syndrome, stroke, catabolic changes after surgery, myocardial infarction,), and hyperglycemia. The GLP-1 compounds can also be used as a sedative.
The GLP-1 compounds can also be used prophylactically, including treating individuals at risk for developing a disease such as listed above. As a specific example, the compounds can be administered prophylactically to an individual at risk for non-insulin dependent diabetes or becoming obese. Such individuals include, for instance, those that have impaired glucose tolerance, those that are overweight and those with a genetic predisposition to the foregoing diseases (e.g., individuals from families with a history of diabetes).
A variety of different subjects can be treated with the GLP-1 compounds. The term “subject” or “patient” as used herein, typically refers to a mammal, and often, but not necessarily, is a human that has or is at risk for one of the foregoing diseases. The subject, however, can also be a non-human primate (e.g., ape, monkey, gorilla, chimpanzee). The subject can also be a mammal other than a primate such as a veterinarian animal (e.g., a horse, bovine, sheep or pig), a domestic animal (e.g., cat or dog) or a laboratory animal (e.g., mouse or rat).
VI. Pharmaceutical Compositions
A. Composition
The GLP-1 compounds that are provided herein can be used as the active ingredient in pharmaceutical compositions formulated for the treatment of the diseases listed in the section on therapeutic utilities. Thus, the GLP-1 compounds that are disclosed can be used in the preparation of a medicament for use in various therapeutic applications, including those listed supra.
In addition to the GLP-1 compound, pharmaceutical compositions can also include one or more other therapeutic agents that are useful in treating one or more the various disorders for which the GLP-1 compounds have utility. General classes of other therapeutic agents that can be combined with certain GLP-1 compositions include, but are not limited to, insulin releasing agents, inhibitors of glucagon secretion, protease inhibitors, glucagon antagonists, anti-obesity agents, compounds that reduce caloric intake, selective estrogen receptor modulators, steroid or non-steroid hormones, growth factors, and dietary nutrients.
Such additional therapeutic agents can include, for instance, agents for treating hyperglycemia, diabetes, hypertension, obesity and bone disorders. Examples of other therapeutic agents for treating diabetes that can be included in the compositions include those used in treating lipid disorders. Specific examples of such agents include, but are not limited to, bile acid sequestrants (e.g., cholestyramine, lipostabil, tetrahydrolipstatin), HMG-CoA reductase inhibitors (see, e.g., U.S. Pat. Nos. 4,346,227; 5,354,772; 5,177,080; 5,385,929; and 5,753,675), nicotinic acid, MTP inhibitors (see, e.g., U.S. Pat. Nos. 5,595,872; 5,760,246; 5,885,983; and 5,962,440), lipoxygenase inhibitors, fibric acid derivatives, cholesterol absorption inhibitors, squalene synthetase inhibitors (see, e.g., U.S. Pat. Nos. 4,871,721; 5,712,396; and 4,924,024) and inhibitors of the ileal sodium/bile acid cotransporter. Other anti-diabetic agents that can be incorporated into the compositions include meglitinides, thiazolidinediones, biguanides, insulin secretagogues, insulin sensitizers, glycogen phosphorylase inhibitors, PPAR-alpha agonists, PPAR-gamma agonists.
An inhibitor of dipeptidylpeptidase IV activity can also be included to inhibit cleavage at the N-terminus of the GLP-1 analog.
The pharmaceutical compositions can include, depending on the formulation desired, pharmaceutically acceptable, non-toxic carriers or diluents, which are defined as vehicles commonly used to formulate pharmaceutical compositions for animal or human administration. The diluent is selected so as not to affect the biological activity of the combination. Examples of such diluents are distilled water, buffered water, physiological saline, PBS, Ringer's solution, dextrose solution, and Hank's solution. In addition, the pharmaceutical composition or formulation can include other carriers, adjuvants, or non-toxic, nontherapeutic, nonimmunogenic stabilizers, excipients and the like. The compositions can also include additional substances to approximate physiological conditions, such as pH adjusting and buffering agents, toxicity adjusting agents, wetting agents and detergents.
The composition can also include any of a variety of stabilizing agents, such as an antioxidant for example. In cases such as this where the pharmaceutical composition includes a polypeptide (e.g., the GLP-1 analog), the polypeptide can be complexed with various well-known compounds that enhance the in vivo stability of the polypeptide, or otherwise enhance its pharmacological properties (e.g., increase the half-life of the polypeptide, reduce its toxicity, enhance solubility or uptake). Examples of such modifications or complexing agents include sulfate, gluconate, citrate and phosphate.
The GLP-1 analog of a composition can also be complexed with molecules that enhance their in vivo attributes. Such molecules include, for example, carbohydrates, polyamines, amino acids, other peptides, ions (e.g., sodium, potassium, calcium, magnesium, manganese), and lipids.
The pharmaceutical compositions can also be formulated as part of a controlled-release system. Such systems can include an implantable osmotic pump, liposomes or a transdermal patch. Methods for delivery using pumps are described, for example, by Langer, 1990, Science 249:1527-33; and Saudek et al., 1989, N. Engl. J. Med. 321:574). Delivery options for using liposomes are discussed, for instance, by Treat et al., 1989, in Liposomes in the Terapy of Infetious Disease and Cancer, (Lopez-Berestein and Fidler, eds.), Liss, New York, pp. 353-65; and Langer, 1990, Science 249:1527-33).
Further guidance regarding formulations that are suitable for various types of administration can be found in Remington's Pharmaceutical Sciences, 1985, Mace Publishing Company, Philadelphia, Pa., 17th ed. For a brief review of methods for drug delivery, see, Langer, 1990, Science 249:1527-1533.
2. Dosage
As noted above, the pharmaceutical compositions can be administered for prophylactic and/or therapeutic treatments. An “effective amount” refers generally to an amount that is a sufficient, but non-toxic, amount of the active ingredient (i.e., GLP-1 compound or GLP-1 analog) to achieve the desired effect, which is a reduction or elimination in the severity and/or frequency of symptoms and/or improvement or remediation of damage. A “therapeutically effective amount” refers to an amount that is sufficient to remedy a disease state or symptoms, or otherwise prevent, hinder, retard or reverse the progression of a disease or any other undesirable symptom. A “prophylactically effective amount” refers to an amount that is effective to prevent, hinder, or retard the onset of a disease state or symptom.
In general, toxicity and therapeutic efficacy of the GLP-1 compound can be determined according to standard pharmaceutical procedures in cell cultures and/or experimental animals, including, for example, determining the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD50/ED50. Compositions that exhibit large therapeutic indices are desirable.
The data obtained from cell culture and/or animal studies can be used in formulating a range of dosages for humans. The dosage of the active ingredient typically lines within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage can vary within this range depending upon the dosage form employed and the route of administration utilized.
The amount of active ingredient administered will depend upon various factors that can be assessed by the attending clinician, such as the severity of the disease, the age and size of the subject to be treated and the particular disease itself. In general, however, the total amount of the GLP-1 analog itself that is administered typically ranges from 1 μg/kg body weight/day to 100 mg/kg/day. In some instances, the dosage ranges from 10 μg/kg/day to 10 mg/kg/day. In other treatment regimens, the GLP-1 compound is administered at 50 ug/kg/day to 5 mg/kg/day or from 100 ug/kg/day to 1 mg/kg/day.
C. Administration
The pharmaceutical compositions described herein can be administered in a variety of different ways. Examples include administering a composition containing a pharmaceutically acceptable carrier via oral, intranasal, rectal, topical, intraperitoneal, intravenous, intramuscular, subcutaneous, subdermal, transdermal, intrathecal, and intracranial methods.
For oral administration, the active ingredient can be administered in solid dosage forms, such as capsules, tablets, and powders, or in liquid dosage forms, such as elixirs, syrups, and suspensions. The active component(s) can be encapsulated in gelatin capsules together with inactive ingredients and powdered carriers, such as glucose, lactose, sucrose, mannitol, starch, cellulose or cellulose derivatives, magnesium stearate, stearic acid, sodium saccharin, talcum, magnesium carbonate. Examples of additional inactive ingredients that may be added to provide desirable color, taste, stability, buffering capacity, dispersion or other known desirable features are red iron oxide, silica gel, sodium lauryl sulfate, titanium dioxide, and edible white ink. Similar diluents can be used to make compressed tablets. Both tablets and capsules can be manufactured as sustained release products to provide for continuous release of medication over a period of hours. Compressed tablets can be sugar coated or film coated to mask any unpleasant taste and protect the tablet from the atmosphere, or enteric-coated for selective disintegration in the gastrointestinal tract. Liquid dosage forms for oral administration can contain coloring and flavoring to increase patient acceptance.
The active ingredient, alone or in combination with other suitable components, can be made into aerosol formulations (i.e., they can be “nebulized”) to be administered via inhalation. Aerosol formulations can be placed into pressurized acceptable propellants, such as dichlorodifluoromethane, propane, nitrogen.
Suitable formulations for rectal administration include, for example, suppositories, which consist of the packaged active ingredient with a suppository base. Suitable suppository bases include natural or synthetic triglycerides or paraffin hydrocarbons. In addition, it is also possible to use gelatin rectal capsules which consist of a combination of the packaged active ingredient with a base, including, for example, liquid triglycerides, polyethylene glycols, and paraffin hydrocarbons.
Formulations suitable for parenteral administration, such as, for example, by intraarticular (in the joints), intravenous, intramuscular, intradermal, intraperitoneal, and subcutaneous routes, include aqueous and non-aqueous, isotonic sterile injection solutions, which can contain antioxidants, buffers, bacteriostats, and solutes that render the formulation isotonic with the blood of the intended recipient, and aqueous and non-aqueous sterile suspensions that can include suspending agents, solubilizers, thickening agents, stabilizers, and preservatives.
The components used to formulate the pharmaceutical compositions are preferably of high purity and are substantially free of potentially harmful contaminants (e.g., at least National Food (NF) grade, generally at least analytical grade, and more typically at least pharmaceutical grade). Moreover, compositions intended for in vivo use are usually sterile. To the extent that a given compound must be synthesized prior to use, the resulting product is typically substantially free of any potentially toxic agents, particularly any endotoxins, which may be present during the synthesis or purification process. Compositions for parental administration are also sterile, substantially isotonic and made under GMP conditions.
EXAMPLES
The following examples, including the experiments conducted and results achieved are provided for illustrative purposes only and are not to be construed as limiting the invention.
Example 1
Synthesis of GLP-1 Compounds
Peptide Synthesis
The following protocol was used to generate GLP-1 analogs as described herein. Nα-Fmoc, side-chain protected amino acids, Wang resin, and Rink amide resin were used. The following side-chain protection strategies were employed: Asp(OtBu), Arg(Pbf), Cys(Acm), Glu(OtBu), Glu(O2-PhiPr), His(Trt), Lys(Nε-Boc), Lys(Nε-Mtt), Ser(OtBu), Thr(OtBu) and Tyr(OtBu). GLP-1 peptide derivatives were synthesized in a stepwise manner on an ABI433 peptide synthesizer by SPPS using O-Benzotriazole-N,N,N′,N′-tetramethyl-uronium-hexafluoro-phosphate (HBTU)/N,N-diisopropylethylamine (DIEA)/N,N-dimethylformamide (DMF) coupling chemistry at 0.2 mmol equivalent resin scale (Fmoc-deprotected Rink amide resin). For each coupling cycle, 1 mmol Nα-Fmoc-amino acid, 4 mmol DIEA and 1 mmol equivalents of HBTU were used. The concentration of the HBTU-activated Fmoc amino acids was 0.5 M in DMF, and the coupling time was 45 min. Fmoc deprotections were carried out with two treatments using a 30% piperidine in DMF solution first for 2 min and then for an additional 20 min.
Lactam Formation
Side-chain to side-chain lactam formation was carried out on the assembled N-terminally Fmoc-protected peptide resin. The peptide-resin was solvated in DCM for 30 mins, and drained. The Mtt and 2-PhiPr groups (protecting at the specified lactam bond forming site) were removed with 1% TFA in DCM solution containing 5% TIS.
Treatment of the peptide-resin with the 1% TFA in DCM solution was repeated 8 times in 30 min increments, and each treatment was followed by extensive DCM washes. The liberate carboxyl and amino groups were then condensed by the addition of 5 equiv of 0.5M benzotriazole-1-yl-oxy-tris-pyrrolidino-phosphonium hexafluorophosphate (PyBOP) and 10 equiv of DIEA in DMF were added to the peptide resin, and left for 24 h. The resin was then wash thoroughly with DMF, DCM, and DCM/MeOH, and dried.
Side Chain Deprotection and Cleavage from Resin
Following synthesis and modification, the resin was then drained, and washed with DCM, DMF, DCM, and then dried in vacuo. The peptide-resin was deprotected and released from the resin by treatment with a trifluoroacetic acid (TFA)/1,2-ethanedithiol (EDT)/triisopropyl-silane (TIS)/H2O (92.5:2.5:2.5:2.5 v/v) solution at room temperature for 90 min. The volatiles were then removed with a stream of nitrogen gas, the crude peptide precipitated twice with diethyl ether and collected by centrifugation.
Acm Deprotection
Crude GLP-1 Cys(Acm)-protected peptide was dissolved in 10% aq AcOH containing freshly added mercury(II) acetate (15 mg/mL). The solution was agitated at ambient temperature for 4 hours. 80% aq. 2-mercaptoethanol was then added to a give 20% v/v composition, mixed thoroughly, and left overnight. It was then diluted with 0.1% aq. TFA, and the grey precipitate containing mercury salts was removed by centrifugation and filtration. The deprotected peptide was then subjected to reversed-phase HPLC purification.
Specific Examples
A synthetic protocol for synthesizing a GLP-1 compound without a ring is presented in FIG. 3, which illustrates the approach for synthesizing an analog that includes a Gly substitution at position 8, an Aib substitution at position 22 and the addition of a cysteine and an alanine at the C-terminus (i.e., SEQ ID NO:18).
FIGS. 4-11 illustrate the approach for synthesizing a variety of different cyclic GLP-1 compounds. FIG. 4, for instance, shows a scheme for forming a cyclic GLP-1 compound in which the side chains of a glutamic acid and lysine residue are joined to form a cyclic lactam. FIG. 5, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of a glutamic acid and ornithine side chain are joined to form a cyclic lactam. FIG. 6, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of an aspartic acid and lysine side chain are joined to form a cyclic lactam. FIG. 7, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of an aspartic acid and ornithine side chain are joined to form a cyclic lactam. FIG. 8, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of a lysine and glutamic acid chain are joined to form a cyclic lactam. FIG. 9, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of a homoglutamic acid and lysine side chain are joined to form a cyclic lactam. FIG. 10, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of a 4-carboxy-phenylalanine and lysine side chain are joined to form a cyclic lactam. FIG. 11, provides an approach for synthesizing a cyclic GLP-1 compound in which the side chains of a beta-Homoglutamic acid and lysine side chain are joined to form a cyclic lactam.
Reversed-Phase HPLC Purification
Reversed-phase high-performance liquid chromatography was performed on an analytical (C18, 5 μm, 0.46 cm×25 cm) or a preparative (C18, 10 μm, 2.2 cm×25 cm) column. Chromatographic separations were achieved using linear gradients of buffer B in A (A=0.1% aqueous TFA; B=90% aq. ACN containing 0.09% TFA) typically 5-95% over 35 min at a flow rate of 1 mL/min for analytical analysis and 5-65% over 90 min at 20 mL/min for preparative separations. Analytical and preparative HPLC fractions were characterized by ESMS and photodiode array (PDA) HPLC, and selected fractions combined and lyophilized.
Mass Spectrometry
Mass spectra were acquired on a single quadrupole mass spectrometer equipped with an Ionspray atmospheric pressure ionization source. Samples (25 μL) were injected into a moving solvent (10 μL/min; 30:50:20 ACN/MeOH containing 0.05% TFA) coupled directly to the ionization source via a fused silica capillary interface (50 μm i.d.). Sample droplets were ionized at a positive potential of 5 kV and entered the analyzer through an interface plate and subsequently through an orifice (100-120 μm diameter) at a potential of 60 V. Full scan mass spectra were acquired over the mass range 400-2200 Da with a scan step size of 0.1 Da. Molecular masses were derived from the observed m/z values.
Pegylation
The thioether-linked PEG-peptides were derived from GLP analogs with reactive cysteine thiols engineered at the desired conjugation site (See Table 2). The activated PEG derivatives were all mono-functional methoxyPEG-maleimides (mPEG-mal) with MWs of 5 kD to 40 kD. Conjugation was achieved by alkylation at pH 6. Briefly, the peptide was dissolved at 2 mg/ml in an amine-free buffer (50 mM sodium phosphate, 5 mM EDTA, pH 6), the mPEG-mal was added in a modest stoichiometric excess (1.2-1.5 fold) and allowed to react 0.5-2 hrs at room temperature. The reaction was monitored by reverse phase HPLC, quenched with 5 mM β-mercaptoethanol, allowed to incubate at room temperature another 30 min and then purified.
Purification was achieved by preparative cation-exchange chromatography using SP Sepharose HP (GE Healthcare) and eluting with a linear 0-500 mM sodium chloride gradient. The eluted PEG-peptide was evaluated by RP-HPLC and SDS-PAGE, pooled then concentrated and dialyzed into 10 mM sodium acetate, 5% sorbitol, and pH 4. Purities of >99% were determined for all the final pools by RP-HPLC. Peptide mapping and sequencing were used to confirm conjugation with PEG at each of the targeted attachment sites.
Example 2
In Vitro Assays
In Vitro Efficacy of GLP-1 Constructs
A. GLP-1R Reporter Assay:
To compare the potency of test compounds with GLP-1, reporter cell lines expressing human or mouse GLP-1 receptors were generated. Increased cAMP levels were measured through enhanced expression of a luciferase reporter gene. Briefly, CHOK1 cells expressing the mouse or human GLP-1 receptor, in addition to harboring a luciferase reporter gene construct regulated by cyclic AMP levels, were plated 2 days prior to the assay, then cultured at 37° C., 5% CO2. The evening prior to assay, the cells were washed, the medium replaced with serum-free medium containing 0.5% protease-free bovine serum albumin (BSA), and then cultured overnight. Cells were exposed to a range of concentrations of test compound or GLP-1 for a period of 6 hours at 37° C. in medium containing 0.5% protease-free BSA and 100 μM IBMX. Cell lysates were assayed for luciferase activity using the Luciferase Assay System (Promega Corporation, Madison, Wis.). Luciferase activity was measured using a Luminoskan Ascent (Thermo Electron Corporation, Marietta, Ohio). Nonlinear regression analyses of resultant compound concentration curves were performed using GraphPad Prism (GraphPad Software, Inc., San Diego, Calif.). The “EC50” represents the concentration of compound at which 50 percent of the maximal activity is achieved.
B. In Vitro GLP-1 Receptor Binding of Constructs
Membrane Preparation. CHOK1 cells expressing either human mouse GLP-1 receptor were harvested from 150 mm culture dishes using PBS. Cells were sedimented at 1500 rpm for 10 minutes. The resulting pellets were homogenized in 15 mls of ice cold sucrose buffer (25 mM Tris-HCl, 0.32 M Sucrose, 0.25 g/L, sodium azide, pH 7.4) with a motorized, glass fitted, Teflon homogenizer. The homogenate was centrifuged at 48,000×g at 4° C. for 10 minutes, resuspended in 25 ml assay buffer (50 mM Tris-HCl, 5 mM MgCl2, 10 mg/ml protease-free BSA, 0.1 mg/ml STI, and 0.1 mg/ml Pefabloc, pH 7.4) with a Tissue-Tearor (Biospec Products), then centrifuged again at 48,000×g for 10 minutes. The pellets were homogenized for a third time in 15 ml assay buffer using the Tissue-Tearor and again centrifuged at 48,000×g for 10 minutes. The resulting pellet was resuspended in assay buffer at a wet weight concentration of 4 mg/ml.
Ligand Binding Assay. Binding assays were performed in 96-well U-bottom plates. Membranes (200 μg tissue) were incubated at room temperature for 2 hours in assay buffer containing 0.2 nM 125I-GLP-1 (PerkinElmer Life Sciences, Boston, Mass.) and with a range of concentrations of test compound or GLP-1 in a total volume of 100 μl. In addition, non-specific binding was assessed in the presence of 1 μM unlabeled GLP-1. The reaction was terminated by rapid filtration through Unfilter-96 GF/C glass fiber filter plates (FilterMate 196 Packard Harvester, PerkinElmer, Shelton, Conn.) pre-soaked in 0.5% polyethylenimine, followed by three washes with 300 μl of cold 50 mM Tris-HCl, pH 7.4. Bound radioactivity was determined using a TopCount microplate scintillation and luminescence counter (Packard Instrument Company, PerkinElmer, Shelton, Conn.). Nonlinear regression analyses of resulting concentration curves were performed using GraphPad Prism (GraphPad Software, Inc., San Diego, Calif.). The “IC50” represents the concentration of compound that reduces the maximal specific 125I-GLP-1 binding by 50 percent.
Example 3
In vivo Assays
A. Db/db Mice:
The db/db diabetic mouse model was used in this screen to further examine GLP-1 compounds in regard to fed blood glucose, with this measurement monitored at 1, 2, 4, 6 and 24 h. The db/db mice are commercially available from The Jackson Laboratory JAX® GEMM® Strain—Spontaneous Mutation Congenic Mice, and are homozygous for the diabetes spontaneous mutation (Leprdb). These mice become identifiably obese around 3 to 4 weeks of age. The criterion for selection for each mouse to enter the study was blood glucose of at least 300 mg/dL. Db/db mice at 8.5 weeks of age (for a chronic 1-2 wk study) to about 10-11 weeks of age (for an acute 1-3 day study) were injected once with each tested compound (acute experiment) or multiple times (chronic experiment).
On the day of the experiment, the mice were bled at 9 am (baseline value) and then immediately handed over to the injector, who then injected the appropriate GLP-1 compound or +/−control. The mice were then placed in a fresh cage without any chow, so as to limit any variability in blood glucose levels associated with eating behaviors. Time points of 1 hr, 4 hr, 6 hr, and 24 hr were normally taken. When at the 24 hour time point blood glucose values were below where they started, further time points at every 24 hrs were taken until blood glucose returned to the baseline levels. Normal chow was given back after the 6 hr time point.
Tachyphylaxis was determined by multiple injections. A second injection of the compound was administered after the blood glucose levels sufficiently returned to starting baseline levels. At this point, it was evident whether the compound had the same effect/efficacy, or if there was any noticeable tachyphylaxis.
B. C57b16 Mice:
C57B16 (normal lean) mice were used at 10 to 12 weeks of age. These mice are commercially available through any vendor, such as Jackson Laboratories or Charles River, and are considered to be normal. The term “lean” is used to contrast these mice to obese db/db mice. C57B16 mice were randomized on body weight. 9 am bleed was performed to determine baseline blood glucose and GLP-1 compounds or PBS was administered prior to place the mice in a cage without food. After 4-5 hrs, an intraperitoneal glucose tolerance test (glucose tolerance test measures the body's ability to metabolize glucose) was performed using 2 g/kg of glucose dose. Blood glucose levels were measured 30 min and 90 minutes after the glucose load was administered and 24 hours or until blood glucose levels were back to the original values. From these studies, the enhanced effect of GLP-1 action in utilizing glucose can be seen as opposed to (−) control PBS.
Example 4
Results with GLP-1 Compounds Related to Formula I
In vitro experiments were conducted to determine receptor binding and potency for a class of molecules having a glycine substitution at position 8, a cysteine substitution at position 22 and a variable C-terminus. Experiments were performed as described in Example 2, and the results are summarized in Table 3 below.











TABLE 3







IC50
EC50
EC50


INTERNAL REF #
SEQUENCE
human
human
mouse























HGEGT FTSDV SSYLE GCAAK EFIAW LVKGR G (SEQ ID NO:
70
nM
0.24
nM
1.4
nM



6)








 


cgGLP-1
SEQ ID NO: 6 + 20K PEG
>1
uM
12
nM
245
nM


 


cgGLP-2
SEQ ID NO: 6 + 40k branched PEG
>1
uM
0.7
nM
3.6
nM


 


cgGLP-3
SEQ ID NO: 6 + 8k PEG dumbbell
84
nM
0.2
nM
5.7
nM


 


cgGLP-7
SEQ ID NO: 6 + 30k PEG
>1
uM
0.2
nM
2.9
nM


 


cgGLP-9
SEQ ID NO: 6 + 20k PEG dimer
>1
uM
1
nM
9
nM


 



HGEGT FTSDV SSYLE GCAAK EFIAW LVKGR GSSGA PPPS
100
nM
0.1
nM
0.8
nM



(SEQ ID NO: 7)








 


cgGLP-12
SEQ ID NO: 7 + 20k PEG monomer
1
uM
1
nM
8
nM


 


cgGLP-14
SEQ ID NO: 7 + 20k PEG dimer
300
nM
0.6
nM
4
nM


 



HGEGT FTSDV SSYLE GCAAK EFIAW LKNGG PSSGA PPPS
100
nM
0.07
nM
0.3
nM



(SEQ ID NO: 8)








 


cgGLP-13
SEQ ID NO: 8 + 20k PEG monomer
>1
uM
1
nM
3
nM


 


cgGLP-15
SEQ ID NO: 8 + 20k PEG dimer
300
nM
0.8
nM
2
nM









As indicated in Table 3, some of these molecules were conjugated to different forms of PEG, with the conjugation occurring at the cysteine at position 23. For instance, a 20 k PEG dimer is a single 20 kD linear PEG polymer with two peptides, both attached at the same end like a fork. “Forked” PEG-(maleimide)2 can be obtained from Nektar Therapeutics (Huntsville, Ala., cat. #2D2MOPOF) and has the following structure:

    
    
        Catalog Number: 2D2D0P0F
        Product Name: M-PEG-(MAL)2, MW 20,000
        Lot Number: PT-02D-17
    
    






“Branched” PEG conjugates are 2 polymers attached at the same site on a single peptide. Branched PEG2-maleimide can also be obtained from Nektar Thearpeutics (Huntsville, Ala.), under cat#2D3X0P11 and has the following structure:

    
    
        Catalog Number: 2D3X0P11
        Product Name: mPEG2-MAL, MW 20,000
        Lot Number: PT-02B-15
    
    






Other molecules (e.g., cgGLP-3) is a “dumbbell” PEG conjugate. In this configuration 2 peptides are conjugated to an 8 kD PEG, one at each end, like a “dumbbell”. The 8 kD mal-PEG-mal polymer is also available from Nektar Therapeutics (Huntsville, Ala.), cat#ZF-066-05 and has the following structure:




Example 5
Results with GLP-1 Compounds Related to Formula II
In vitro experiments were conducted to determine receptor binding and potency for GLP-1 compounds having a substitution at position 8 and either a CSG or CSGG C-terminal addition. The pegylated molecules were conjugated at the cysteine at position 38. Experiments were conducted as described in Example 2, and the results are summarized in Table 4 below.











TABLE 4







IC50
EC50
EC50


INTERNAL REF #
SEQUENCE
human
human
mouse























HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR GCSG
17
nM
0.05
nM
0.32
nM



(SEQ ID NO: 10)








 


cgGLP-4 & mgGLP-09A
SEQ ID NO: 10 + 20k PEG
130
nM
0.23
nM
1.8
nM


 


cgGLP-5
SEQ ID NO: 10 + 40k branched PEG
>1
uM
0.3
nM
1.5
nM


 


cgGLP-6
SEQ ID NO: 10 + 8k PEG dumbbell
11
nM
~0.1
nM
0.8
nM


 


cgGLP-8
SEQ ID NO: 10 + 30k PEG
170
nM
0.4
nM
3
nM


 


cgGLP-10
SEQ ID NO: 10 + 20k PEG dimer
100
nM
0.6
nM
4
nM


 


cgGLP-16
SEQ ID NO: 10 + 30k PEG
1
uM
0.39
nM
4
nM


 



H[Aib]EGT FTSDV SSYLE GQAAK EFIAW LVKGR
100
nM
4
nM
>50
nM



GCSGG (SEQ ID NO: 11)








 


cgGLP-17
SEQ ID NO: 11 + 20k PEG
1
uM
20
nM
>100
nM


 














H[bAla]EGT FTSDV SSYLE GQAAK EFIAW LVKGR
400
nM
>100
nM
undet'd



GCSGG (SEQ ID NO: 12)







 












cgGLP-18
SEQ ID NO: 12 + 20k PEG
>1
uM
undet'd
undet'd





Aib = alpha aminobutyric acid


bAla = beta aminopropionic acid






Example 6
Results with Compounds Related to Formula III
In vitro experiments were conducted to determine receptor binding and potency for GLP-1 compounds having either an Aib (2-aminoisobutyric acid) or Aad (2-aminoadipic acid) substitution at position 22 and optional substitution at position 8 and at the C-terminus. The pegylated molecules were conjugated at the cysteine at position 38. Experiments were performed as described in Example 2, and the results are summarized in Table 5 below.











TABLE 5







IC50
EC50
EC50


INTERNAL REF #
SEQUENCE
human
human
mouse























HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR-
2.5
nM
16
pM
0.15
nM



AMIDE (SEQ ID NO: 14)








 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR G-
3.5
nM
27
pM
0.12
nM



AMIDE (SEQ ID NO: 15)








 


cgGLP-23
HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR GC-
300
nM
0.2
nM
3
nM



AMIDE









SEQ ID NO: 17 + 20k PEG








 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR GCA-


25
pM
0.2
nM



AMIDE (SEQ ID NO: 18)








 


mgGLP32 & mgGLP-
SEQ ID NO: 18 + 20k PEG
56
nM
0.13
nM
0.84
nM


20









 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR GCG-









AMIDE (SEQ ID NO: 20)








 


mgGLP-16
SEQ ID NO: 20 + 20k PEG
50
nM
0.2
nM
1.6
nM


 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR GCSG
18
nM
68
pM
300
pM



(SEQ ID NO: 21)








 


mgGLP19 & cgGLP-
SEQ ID NO: 21 + 20k PEG
230
nM
0.32
pM
4
nM


 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR GCSG-
17
nM
45
pM
0.27
nM



AMIDE (SEQ ID NO: 22)








 


cgGLP-24 cgGLP-
SEQ ID NO: 22 + 20k PEG
47
nM
0.1
nM
0.84
nM


27, mgGLP-22,









mgGLP-33 & mgGLP-









27









 


cpGLP-25
SEQ ID NO: 22 + 5k PEG
15
nM
39
pM
0.9
nM


 


cgGLP-26
SEQ ID NO: 22 + 10k PEG
23
nM
59
pM
0.9
nM


 


cgGLP-28
SEQ ID NO: 22 + 30k PEG
71
nM
0.1
nM
0.8
nM


 


cgGLP-29
SEQ ID NO: 22 + 40k branched PEG
800
nM
0.15
nM
1
nM


 



HGEGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR









GCSGG-AMIDE (SEQ ID NO: 24)








 


mgGLP-15
SEQ ID NO: 24 + 20k PEG
100
nM
0.2
nM
1.8
nM


 



H[Aib]EGT FTSDV SSYLE [Aib]QAAK EFIAW LVKGR









GCSG (SEQ ID NO: 25)








 


cgGLP-20
SEQ ID NO: 25 + 20k mPEG
30
nM
99
pM
1.5
nM









Example 7
Results with Cyclic GLP-1 Compounds
In vitro experiments were conducted to determine receptor binding and potency for a variety of GLP-1 compounds in which the side chains of certain amino acids were joined to form a ring (a cyclic lactam). Experiments were performed as described in Example 2. The sequences of the cyclic compounds tested are shown in Table 6 together with the results. The side chains of the amino acids involved in forming the cyclic lactam are shown in bold type and underlined. Of the compounds listed in Table 6, only mgGLP-24 was pegylated.











TABLE 6







IC50
EC50
EC50


INTERNAL REF #
SEQUENCE
human
human
mouse







[Gly8]GLP1(7-37)
HGEGT FTSDV SSYEE GQKAK EFIAW LVKGR G

12 pM
0.21 nM


cyclo[Glu14-Lys18]
AMIDE (SEQ ID NO: 35)





 


[Gly8]GLP1(7-37)
HGEGT FTSDV SSYLE GQAKK EFIAW LVKGR G

0.15 nM  
  66 pM


cyc[Glu15-Lys19]
AMIDE (SEQ ID NO: 36)





 


GLP1(7-37)
HGEGT FTSDV SSYLE GQAKK EFIAW LEKGR K

undet'd
undet'd


cyclo[Glu15-Lys19;
AMIDE (SEQ ID NO: 277)





27-31]






 


[Gly8]cyclo[21-26]
HGEGT FTSDV SSYLE GQAAK EFIAW LVKGR G

0.6 nM 
undet'd


GLP1(7-37)-amide
AMIDE (SEQ ID NO: 42)





 


cycloE22-K26
HGEGT FTSDV SSYLE EQAAK EFIAW LVKGR G-
1.1 nM
 9 pM
  68 pM



AMIDE (SEQ ID NO: 30)





 


mgGLP24
SEQ ID NO: 30 + 20k mPEG
 48 nM
0.25 nM  
 0.9 nM


 


cycloE22-O26
HGEGT FTSDV SSYLE EQAAO EFIAW LVKGR G-
3.7 nM
51 pM
0.25 nM



AMIDE (SEQ ID NO: 69)





 


GLP1(7-37)
HGEGT FTSDV SSYLE KQAAE EFIAW LVKGR G

16 pM
 0.1 nM


cyclo[Lys16-Glu20]
AMIDE (SEQ ID NO: 159)





 


[Gly8]GLP1(7-37)
HGEGT FTSDV SSYLE GEAAK KFIAW LVKGR G

18 pM
0.17 nM


cyclo[Glu17-Lys21]
AMIDE (SEQ ID NO: 38)





 


[Gly8]GLP1(7-37)
HGEGT FTSDV SSYLE GQEAK EKIAW LVKGR G

0.8 nM 
undet'd


cyclo[Glu18-Lys22]
AMIDE (SEQ ID NO: 39)





O = ornithine = aa w/ CH2CH2CH2NH3 side chain






Example 8
Results with GLP-1 Compounds Having N-Terminal Extension
In vitro experiments were conducted to determine receptor binding and potency for GLP-1 compounds having an N-terminal extension. Experiments were performed as described in Example 2, and the results are summarized in Table 7 below. None of the compounds listed in Table 7 were pegylated.











TABLE 7





INTERNAL

IC50
EC50
EC50


REF #
SEQUENCE
human
human
mouse






















A-GLP-1
A HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 247)
38
nM
0.2
nM
0.8
nM


 


G-GLP-1
G HAEGT FYSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 248)
80
nM
1
nM
3
nM


 


P-GLP-1
P HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 249)
38
nM
0.2
nM
1
nM


 


S-GLP-1
S HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 250)
53
nM
0.4
nM
2
nM


 


T-GLP-1
T HAEGT FYSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 251)
53
nM
0.3
nM
2
nM


 


V-GLP-1
V HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 252)
32
nM
0.2
nM
1
nM


 


MQ-GLP1
MQ HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 253)
64
nM
0.5
nM
3.0
nM


 


MR-GLP1
MR HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 254)
590
nM
8
nM
41
nM


 


MK-GLP1
MR HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 255)
760
nM
4
nM
12
nM


 


M-GLP1
M HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 256)
18
nM
86
pM
0.5
nM


 


MH-GLP1
MH HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 257)
350
nM
2
nM
11
nM


 


MHH-GLP1
MHH HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO:
350
nM
1.0
nM
5
nM



258)








 


MY-GLP1
MY HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 259)
57
nM
0.4
nM
1
nM


 


MI-GLP1
MI HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 260)
75
nM
0.6
nM
6
nM


 


MD-GLP1
MD HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 261)
82
nM
0.3
nM
2
nM


 


ML-GLP1
ML HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 262)
160
nM
0.7
nM
6
nM


 


MN-GLP1
MN HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 263)
50
nM
0.3
nM
2
nM


 


ME-GLP1
ME HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 264)
95
nM
1
nM
4
nM


 


MW-GLP1
MW HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 265)
79
nM
0.8
nM
5
nM


 


MF-GLP1
MF HAEGT FTSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 266)
180
nM
1
nM
6
nM


 


MM-GLP1
MM HAEGT FYSDV SSYLE GQAAK EFIAW LVKGR (SEQ ID NO: 267)
100
nM
0.5
nM
3
nM









Example 9
In vivo Results—Effect on Blood Glucose Levels with Time
A variety of different GLP-1 compounds, including representatives from the different classes disclosed herein (e.g., compounds having the general structure of formulas I-IV described above), were tested for their ability to affect blood glucose levels. In these experiments, blood glucose was measured in db/db mice as described in Example 3.
FIG. 12 shows the ability of cgGLP-17, cgGLP-18, cgGLP-19, mgGLP-09A (see Tables 4 and 5 for sequences and size and type of PEG) and mg-GLP-09A to lower blood glucose over a 72 hour time span. Each of these compounds lowered blood glucose relative to control, with cg-GLP-19 lowering blood glucose for the longest period of time (72 hours was needed at a 10 ug/mouse dose for glucose levels in the mouse to return to normal levels). Another set of experiments were conducted with cgGLP-19, cgGLP-20, cgGLP-23, cgGLP-24 (see Table 5 for sequences and size and type of PEG). 10 ug of GLP-1 compound was injected into each mouse. As shown in FIG. 13, these four GLP-1 compounds showed similar ability to decrease blood glucose levels over time, each causing a significant decrease in blood glucose levels over a 48 hour time period.
Another set of experiments were conducted using mgGLP-20, cgGLP-26, mgGLP-22, and mgGLP-24 (see Tables 5 and 6 for sequences and size and type of PEG). Dosage was 10 ug per mouse. As shown in FIG. 14, although each compound lowered blood glucose levels, they did so differently. In this example, mgGLP-20 and mgGLP-24 lowered glucose for the longest period of time. With these two compounds, 72 hours was needed for blood glucose levels to return to normal levels.
Example 10
Lowering of Blood Glucose in Dose Dependent Fashion
As described in Example 3, db/db mice were injected with mgGLP-32 (see Table 5 for sequence and PEG size) at different doses (5 and 10 μg/mouse). As shown in FIG. 15, mgGLP-32 lowered blood glucose levels for 24 hours in a dose dependent fashion.
Example 11
Lean GTT Experiments
GLP-1 action on insulin release is greater in presence of glucose than in the absence of glucose. C57B16 mice have normal blood glucose, it is then challenging to determine differences in efficacy between different GLP-1 analogs (window for efficacy is not very broad). In order to determine efficacy between tested GLP-1 analogs, GTT was performed in C57B16 mice 52 hours post the GLP-1 analogs or PBS injections as described in example 3. FIG. 16 shows mgGLP-20, mgGLP-22 and mgGLP-24 decreased blood glucose to the same extent during the first 52 hours after injection of the GLP-1 analogs or PBS (see Tables 5 and 6 for sequences and size and type of PEG molecule). At 30 min into the GTT, the separation between glucose levels of the vehicle treated mice and the GLP-1 analogs treated mice, demonstrating the expected effect of GLP-1 analogs on reducing blood glucose. Also, at 30 min mgGLP-24 showed a greater efficacy than mgGLP-22 and mgGLP-22 showed a greater efficacy than mgGLP-20 at lowering blood glucose during the GTT.
Example 12
Multi Dose Experiments
To test whether tachyphylaxis was an issue with long acting forms of GLP-1 compounds, a multiple dose experiment was performed in db/db mice. The method described in Example 3 was used, except that a second bolus of the GLP-1 compound was injected the next day, right after the 24 hour blood glucose measurement. As shown in FIG. 17, blood glucose was decreased to the same extent on the second day with mgGLP-33 (see Table 5 for sequence and PEG size). No tachyphylaxyis was observed with the tested GLP-1 compound. The same result was observed with mgGLP-20 (see Table 5 for sequence and size and type of PEG).
In addition, a 4-day, multiple dose experiment with mgGLP-32 was performed (see Table 5 for sequence and size and type of PEG) in normal C57B16 mice. Also, to determine efficacy, a GTT was performed after the first injection, and a second GTT was performed after the 4th injection. GTT were performed as described in Example 3. Results showing GLP-1 analogs efficiency on blood glucose are shown in FIG. 18.
As shown in FIG. 19, blood glucose was decreased during the 4 hour fast with mgGLP-20. Also, no blood glucose spike was seen during the first and second GTT in the mice treated with mgGLP-20. No tachyphylaxyis was observed after the 4th dose of mgGLP-20.
Example 13
Pegylation Studies
All activated PEG polymers were obtained from Nektar Therapeutics (Huntsville, Ala.). A discussion of the different forms of PEG molecules used is provided in Example 4.
Numerous PEG-maleimide polymers are available ranging in size from 5-40 kD, and may also contain branched PEG polymers or have multivalent functional groups.
These polymers were used to determine an optimal balance of PEG size, polymer branching and peptide valence for improved pharmacokinetics with minimal impact on receptor binding. GLP-1 analogues were prepared from linear, mono-functional PEG-maleimides of: 5 kD, 10 kD, 20 kD and 30 kD. Also, a 40 kD branched PEG (2×20 kD polymers) maleimide was tested. The in vitro binding assay highlights an inverse relationship between PEG size and receptor affinity, with the branched 40 kD polymer having a very significant impact on receptor binding (Tables 3-5). Similarly, PEG size influences the duration of glucose decrease in vivo, with larger polymers typically achieving the greatest duration (data not shown). However, there is a limit to this effect and the largest PEG-GLP analogue (cgGLP-29) with a branched 40 kD polymer was not the most active in vivo.
FIGS. 20 & 21 show results for a GLP-1 reporter assay for the activation of the human GLP-1 receptor by SEQ ID NOS: 6 and 10 respectively conjugated to: 1) two 8 kD PEG polymers, one at each end, like a “dumbbell”; 2) 20 kD PEG polymer; 3) 30 kD PEG polymer; or 4) 40 kD branched PEG polymer. Interestingly, while SEQ ID NO:10 shows similar functional activity for the 20, 30 and 40 kD PEG conjugates, SEQ ID NO:6 shows a marked reduction in activity with the 20 kD conjugate, while the 40 kD branched conjugate shows similar potency to the 30 kD and 8 kD dumbbell conjugates. This is in contrast to the observed inverse relationship between receptor binding affinity and PEG size. FIG. 22 shows similar results from the GLP-1 receptor functional assay using SEQ ID NO:22 conjugated to: 1) 5 kD PEG polymer; 2) 10 kD PEG polymer; 3) 20 kD PEG polymer; 4) 30 kD PEG polymer; or 5) 40 kD branched PEG polymer. The EC50 values corresponding to these results are summarized in Tables 3-5. With these peptide conjugates, we see similar in vitro potency with all sizes of PEG conjugates with the exception of the 5 kD PEG conjugate having potency similar to the unconjugated peptide. An in vivo set of experiments were conducted using cgGLP-25 (5 kDa PEG), cgGLP-26 (10 k Da PEG), cgGLP-27 (20 kDa PEG) and cgGLP-28 (branched 40 kDa PEG) to determine the effect of different sizes and shapes of PEG have on the ability to lower glucose levels. Each of these compounds has the amino acid sequence of SEQ ID NO:22 but differ in the size or shape of the PEG that is attached as indicated. Blood glucose was measured in db/db mice as described in Example 3. The different compounds lowered blood glucose differently, with cgGLP-27 lowering blood glucose for the longest period of time (FIG. 23).
* * *
It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference in their entirety for all purposes to the same extent as if each individual publication, patent or patent application were specifically and individually indicated to be so incorporated by reference.

## Claims

1. A GLP-1 compound comprising a GLP-1 analog that comprises the amino acid sequence of SEQ ID NO:18.

2. The GLP-1 compound of claim 1, further comprising a water-soluble polymer.

3. The GLP-1 compound of claim 2, wherein the water-soluble polymer is selected from the group consisting of polyethylene glycol, monomethoxy-polyethylene glycol, dextran, cellulose, poly-(N-vinyl pyrrolidone) polyethylene glycol, propylene glycol homopolymers, polypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols, and polyvinyl alcohol.

4. A method for treating a subject with a metabolic disorder, comprising administering to the subject an effective amount of a GLP-1 compound of claim 1, wherein the metabolic disorder is selected from the group of diabetes, impaired glucose tolerance, insulin resistance, irritable bowel syndrome, obesity and metabolic syndrome.

5. A method for treating a coronary disease or a lipid disorder in a subject, comprising administering to the subject a GLP-1 compound of claim 1, wherein the coronary disease or lipid disorder is selected from the group consisting of hypertension, coronary artery disease, hyperlipidemia, cardiovascular disease, atherosclerosis, hypercholesteremia and myocardial infarction.

6. A method for treating a subject, comprising administering to the subject a GLP-1 compound of claim 1, wherein the amount of the GLP administered is an amount sufficient to stimulate insulin release, reduce blood glucose levels, increase plasma insulin levels, increase beta-cell mass, induce satiety, reduce gastric secretion, delay gastric emptying or reduce gastric motility in the subject.

7. A pharmaceutical composition comprising the GLP-1 compound of claim 1.