# Patent

## Title
Interaction of moraxella catarrhalis with epithelial cells, extracellular matrix proteins and the complement system

## Abstract

The present disclosure relates to surface proteins of Moraxella catarrhalis and their ability to interact with epithelial cells via cell-associated fibronectin and laminin, and also to their ability to inhibit the complement system. These surface proteins are useful in the preparation of vaccines. The present disclosure also provides peptides interacting with fibronectin, laminin and the complement system.

## Background
CROSS REFERENCE TO RELATED APPLICATIONS
This application is a divisional of U.S. patent application Ser. No. 14/508,033, filed Oct. 7, 2014, now issued as U.S. Pat. No. 9,255,127, which is a divisional of U.S. patent application Ser. No. 13/666,941, filed Nov. 1, 2012, and now issued as U.S. Pat. No. 8,895,030, which is a divisional of U.S. patent application Ser. No. 13/314,727, filed Dec. 8, 2011, and now issued as U.S. Pat. No. 8,323,667, which is a divisional of U.S. application Ser. No. 12/063,408, filed on Feb. 8, 2008, and now issued as U.S. Pat. No. 8,092,811, which is a national stage filing under 35 U.S.C. §371 of International Application No. PCT/SE2006/000931, filed on Aug. 8, 2006, which claims the benefit of priority of U.S. Provisional Application No. 60/706,745, filed on Aug. 10, 2005, and of U.S. Provisional Application No. 60/707,148, filed on Aug. 11, 2005. All seven applications are incorporated herein by reference in their entireties.


SEQUENCE LISTING
The instant application contains a Sequence Listing, which is hereby incorporated by reference in its entirety. A computer readable copy of the Sequence Listing (ASCII copy) is submitted concurrently herewith to the U.S. Patent and Trademark Office via EFS-Web as part of a file created on created on Nov. 1, 2012, named SequenceListing.txt, and being 199,367 bytes in size.
TECHNICAL FIELD OF THE INVENTION
The present invention relates to Moraxella catarrhalis and their ability to interact with epithelial cells via extracellular matrix proteins such as fibronectin and laminin, and also to their ability to inhibit the complement system. The interaction with these extracellular proteins is useful in the preparation of vaccines.
BACKGROUND ART
The ability to bind epithelial cells is of great importance for several bacterial species. For example, Staphylococcus aureus and Streptococcus pyogenes possess fibronectin binding proteins (FnBP) with related sequence organization. These FnBP are known as Microbial Surface Components Recognizing Adhesive Matrix Molecules (MSCRAMMs). They exploit the modular structure of fibronectin forming extended tandem beta-zippers in its binding to fibronectin. [27, 39, 47, 73] The function is to mediate bacterial adhesion and invasion of host cells.
The important mucosal pathogen Moraxella catarrhalis is the third leading bacterial cause of acute otitis media in children after Streptococcus pneumoniae and Haemophilus influenzae. [14, 40, 55] M. catarrhalis is also one of the most common inhabitants of the pharynx of healthy children.
Furthermore, M. catarrhalis is also a common cause of sinusitis and lower respiratory tract infections in adults with chronic obstructive pulmonary disease (COPD). [74] The success of this species in patients with COPD is probably related in part to its large repertoire of adhesins.
Recent years focus of research has been on the outer membrane proteins and their interactions with the human host. [6, 48, 56] Some of these outer membrane proteins appear to have adhesive functions including amongst others, M. catarrhalis IgD binding protein (MID, also designated Hag), protein CD, M. catarrhalis adherence protein (McaP) and the ubiquitous surface proteins (Usp). [1, 22, 33, 48, 61, 81, 84]
SUMMARY OF THE INVENTION
In view of the fact that M. catarrhalis has been found to be such a leading cause of infections in the upper and lower airways, there is a current need to develop vaccines which can be used against M. catarrhalis. 
The aim of the present invention has therefore been to find out in which way M. catarrhalis interacts with epithelial cells in the body and affects the immune system. In this way, substances that can act as vaccines against M. catarrhalis can be developed.
In this study, using M. catarrhalis mutants derived from clinical isolates, the inventors have been able to show that both UspA1 and A2 bind fibronectin and laminin. Furthermore, the inventors have been able to show that M. catarrhalis interfere with the classical pathway of the complement system, and also to elucidate in which way they interfere.
Many bacteria adhere to epithelial cells via fibronectin binding MSCRAMMS. [54, 77] Pseudomonas aeruginosa has a FnBP that binds to cellular associated fibronectin on nasal epithelial cells. [69] Blocking the bacteria-fibronectin protein interactions may help the host tissue to overcome the infection. In fact, it has been shown that antibodies against a S. aureus FnBP resulted in rapid clearance of the bacteria in infected mice. [71]
Recombinant truncated UspA1/A2 proteins together with smaller fragments spanning the entire molecule have been tested according to the present invention for fibronectin binding. Both UspA1 and A2 bound fibronectin and the fibronectin binding domains were found to be located within UspA1299-452 and UspA2165-318. These two truncated proteins both inhibited binding of M. catarrhalis to Chang conjunctival epithelial cells to a similar extent as anti-fibronectin antibodies. The observations made show that both M. catarrhalis UspA1 and A2 are involved in the adherence to epithelial cells via cell-associated fibronectin. The biologically active sites within UspA1299-452 and UspA2165-318 are therefore suggested as potential candidates to be included in a vaccine against M. catarrhalis. 
Further, the inventors have studied and characterized binding of M. catarrhalis to laminin. M. catarrhalis is a common cause of infectious exacerbations in patients with COPD. The success of this species in patients with COPD is probably related in part to its large repertoire of adhesins. In addition, there are pathological changes such as loss of epithelial integrity with exposure of basement membrane where the laminin layer itself is thickened in smokers. [4] Some pathogens have been shown to be able to bind laminin and this may contribute to their ability to adhere to such damaged and denuded mucosal surfaces. These include pathogens known to cause significant disease in the airways such as S. aureus and P. aeruginosa amongst others. [7, 63] The present inventors have been able to show that M. catarrhalis ubiquitous surface protein (Usp) A1 and A2 also bind to laminin. Laminin binding domains of UspA1 and A2 were, amongst others, found within the N-terminal halves of UspA150-491 and UspA230-351. These domains are also containing the fibronectin binding domains. However, the smallest fragments that bound fibronectin, UspA1299-452 and UspA2165-318, did not bind laminin to any appreciable extent. Fragments smaller than the N-terminal half of UspA1 (UspA150-491) lose all its laminin binding ability, whereas with UspA2, only UspA230-170 bound laminin albeit at a lower level than the whole recombinant protein (UspA230-539). These findings suggest that different parts of the molecule might have different functional roles. UspA150-770 was also found to have laminin binding properties.
Comparing the smallest laminin binding regions of UspA1 and A2, we find that there is, however, little similarity by way of amino acid homology between UspA230-170 and UspA150-491 (data not shown). This is not surprising as it is a known fact that both proteins have a ‘lollipop’-shaped globular head structure despite having only 22% identity in both N terminal halves. [2, 32]
The biologically active sites within UspA150-770 and UspA230-539 are suggested as potential candidates to be included in a vaccine against M. catarrhalis. 
Finally, the inventors have studied the interaction between M. catarrhalis ubiquitous surface proteins A1 and A2 and the innate immune system, and have found that M. catarrhalis interferes with the complement system. The complement system is one of the first lines of innate defence against pathogenic microorganisms, and activation of this system leads to a cascade of protein deposition on the bacterial surface resulting in formation of the membrane attack complex or opsonization of the pathogen followed by phagocytosis. [85, 86] One of the most important complement proteins is C3, which is present in the circulation in a concentration similar to some immunoglobulins (1-1.2 mg/ml). C3 does not only play a crucial role as an opsonin, but also is the common link between the classical, lectin and alternative pathways of the complement activation. The alternative pathway functions as amplification loop for the classical and lectin pathways and can also be spontaneously activated by covalent attachment of C3 to the surface of a microbe in the absence of complement inhibitors. C3 deposition requires the presence of an internal thioester bond, formed in the native protein by the proximity of a sulfhydryl group (Cys1010) and a glutamyl carbonyl (Gln1012) on the C3 α-chain. [76] Proteolytic cleavage of a 77-residue peptide from the amino terminus of the C3 α-chain generates C3a (anaphylatoxin) and C3b. Attachment of C3b is then accomplished through a covalent link between the carbonyl group of the metastable thioester and either —NH2 or —OH groups of proteins or carbohydrate structures on the activator surface. [36, 37] M. catarrhalis UspA1 and A2 have been found to non-covalently and in a dose dependent manner bind both the third component of complement (C3) from EDTA-treated serum and methylamine treated C3 (C3met). UspA150-770 and UspA230-539 have been found to bind to C3 and C3met. The C3-binding region for UspA2 was found to mainly be localised in UspA2200-458. UspA1 has however been found to have a minor role in the interactions. The biologically active sites within UspA150-770 and UspA230-539 are suggested as potential candidates to be included in a vaccine against M. catarrhalis. 
The UspA family consists of UspA1 (molecular weight 88 kDa), UspA2 (62 kDa), and the hybrid protein UspA2H (92 kDa). [2, 43] These proteins migrate as high molecular mass complexes in SDS-PAGE, are relatively conserved and hence important vaccine candidates. The amino acid sequences of UspA1 and A2 are 43% identical and have 140 amino acid residues that are 93% identical. [2] In a series of 108 M. catarrhalis nasopharyngeal isolates from young children with otitis media, uspA1 and uspA2 genes were detected in 107 (99%) and 108 (100%) of the isolates, respectively. Twenty-one percent were identified as having the hybrid variant gene uspA2H. [50] Moreover, it is known that naturally acquired antibodies to UspA1 and A2 are bactericidal. [15]
Several functions have been attributed to the UspA family of proteins. UspA1 expression is essential for the attachment of M. catarrhalis to Chang conjunctival epithelial cells and Hep-2 laryngeal epithelial cells. [43, 49] In a more recent study, UspA1 was shown to bind carcinoembryonic antigen related cell adhesion molecules (CEACAM) expressed in the lung epithelial cell line A549. [31] Purified UspA1 has also been shown to bind fibronectin in dot blot experiments while purified UspA2 did not. [49] Both UspA1 and A2 may play important roles for M. catarrhalis serum resistance. [1, 5, 58, 60]
The present invention demonstrates that both UspA1 and A2 are determinants for M. catarrhalis binding to fibronectin and laminin in the clinical isolates M. catarrhalis BBH18 and RH4. Interestingly, recombinant UspA1 and A2 derived from M. catarrhalis Bc5 both bound fibronectin to the same extent. The binding domains for fibronectin were found within amino acid residues 299 to 452 of UspA1 and 165 to 318 of UspA2. These two domains share 31 amino acid residues sequence identity. Importantly, truncated protein fragments containing these residues in UspA1 and UspA2 were able to inhibit M. catarrhalis binding to Chang epithelial cells suggesting that the interactions with these cells were via cell-associated fibronectin.
The binding domains for laminin were found within the amino acid residues mentioned above. Binding assays with recombinant proteins revealed that the major binding regions were localized in the N-terminal parts, where both proteins form a globular head.
Bacterial factors mediating adherence to tissue and extracellular matrix (ECM) components are grouped together in a single family named “microbial surface components recognizing adhesive matrix molecules” (MSCRAMMS). Since UspA1/A2 both bind fibronectin and laminin, these proteins can be designated MSCRAMMS.
According to one aspect the present invention provides a peptide having sequence ID no. 1, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 2, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to a further aspect the present invention provides a peptide having sequence ID no. 3, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 4, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to a further aspect the present invention provides a peptide having sequence ID no. 5, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to a further aspect the present invention provides a peptide having sequence ID no. 6, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 7, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 8, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 9, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect the present invention provides a peptide having sequence ID no. 10, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
According to another aspect, the present invention provides use of at least one peptide according to the invention for the production of a medicament for the treatment or prophylaxis of an infection, preferably an infection caused by M. catarrhalis, in particular caused by carriage of M. catarrhalis on mucosal surfaces.
According to another aspect, the invention further provides a ligand comprising a fibronectin binding domain, said ligand consisting of an amino acid sequence selected from the group consisting of Sequence ID No. 1, Sequence ID No. 2 and Sequence ID No. 3, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
The invention further provides a ligand comprising a laminin binding domain, said ligand consisting of an amino acid sequence selected from the group consisting of Sequence ID No. 4 to Sequence ID No. 8, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
Further, the present invention provides a ligand comprising a C3 or C3met binding domain, said ligand consisting of an amino acid sequence selected from the group consisting of Sequence ID No. 4, Sequence ID No. 6, Sequence ID No. 9 and Sequence ID No. 10, and fragments, homologues, functional equivalents, derivatives, degenerate or hydroxylation, sulphonation or glycosylation products and other secondary processing products thereof.
Further, the present invention provides a medicament comprising one or more ligands according to the invention and one or more pharmaceutically acceptable adjuvants, vehicles, excipients, binders, carriers, or preservatives.
The present invention further provides a vaccine comprising one or more ligands according to the present invention and one or more pharmaceutically acceptable adjuvants, vehicles, excipients, binders, carriers, or preservatives.
The present invention also provides a method of treating or preventing an infection in an individual, preferably an infection caused by M. catarrhalis, in particular caused by carriage of M. catarrhalis on mucosal surfaces, comprising administering a pharmaceutically effective amount of a medicament or vaccine according to the present invention.
Finally, the present invention also provides a nucleic acid sequence encoding a ligand, protein or peptide of the present invention, as well as homologues, polymorphisms, degenerates and splice variants thereof.
Further disclosure of the objects, problems, solutions and features of the present invention will be apparent from the following detailed description of the invention with reference to the drawings and the appended claims.
The expression ligand as it is used herein is intended to denote both the whole molecule which binds to the receptor and any part thereof which includes the receptor binding domain such that it retains the receptor binding property. Ligands comprising equivalent receptor binding domains are also included in the present invention.
The expressions fragment, homologue, functional equivalent and derivative relate to variants, modifications and/or parts of the peptides and protein fragments according to the invention which retain the desired fibronectin, laminin, C3 or C3met binding properties.
A homologue of UspA1 according to the present invention is defined as a sequence having at least 72% sequence identity, as can be seen from table 1 below.
A fragment according to the present invention is defined as any of the homologue sequences which are truncated or extended by 1, 2, 5, 10, 15, 20 amino acids at the N-terminus and/or truncated or extended by 1, 2, 5, 10, 15, 20 amino acids at the C-terminus.
The expressions degenerate, hydroxylation, sulphonation and glycosylation products or other secondary processing products relate to variants and/or modifications of the peptides and protein fragments according to the invention which have been altered compared to the original peptide or protein fragment by degeneration, hydroxylation, sulphonation or glycosylation but which retain the desired fibronectin, laminin, C3 or C3met binding properties.
The present invention concerns especially infections caused by Moraxella catarrhalis. A peptide according to the present invention can be used for the treatment or prophylaxis of otitis media, sinusitis or lower respiratory tract infections.







TABLE 1







Multiple alignment of full length UspA1 protein


sequences, associated identity percentages















O12E
O35E
O46E
P44
TTA24
TTA37
V1171


















ATCC25238
81
75
83
83
84
79
84


O12E

74
77
83
76
72
75


O35E


72
74
83
73
78


O46E



81
81
82
80


P44




81
75
77


TTA24





76
84


TTA37






78
















TABLE 2







UspA2 Pileup Analysis - Strains and sequences used












acc
Strain
des
sl





  TREMBL:O54407_MORCA
O54407
O35E
Ubiquitous surface
576





protein A 2.


  TREMBL:Q58XP4_MORCA
Q58XP4
MC317
UspA2.
650


  TREMBL:Q848S1_MORCA
Q848S1
E22
Ubiquitous surface
877





protein A2H.


  TREMBL:Q848S2_MORCA
Q848S2
V1122
Ubiquitous surface
616





protein A2.


  TREMBL:Q8GH86_MORCA
Q8GH86
P44
UspA2.
668


  TREMBL:Q9L961_MORCA
Q9L961
TTA37
USPA2H.
889


  TREMBL:Q9L962_MORCA
Q9L962
O46E
USPA2H.
894


  TREMBL:Q9L963_MORCA
Q9L963
O12E
USPA2 (Ubiquitous
684





surface protein A2).


  TREMBL:Q9XD51_MORCA
Q9XD51
V1171
UspA2.
674


  TREMBL:Q9XD53_MORCA
Q9XD53
TTA24
UspA2.
613


TREMBL:Q8RTB2_MORCA
Q8RTB2
SP12-5
UspA2
686


  TREMBL:Q9XD55_MORCA
Q9XD55
ATCC25238
UspA2.
630


Forsgren_UspA2


UspA2.
630









Accordingly, the present invention provides a ligand isolated from Moraxella catarrhalis outer membrane protein which has laminin and/or fibronectin and/or C3-binding, wherein said ligand is a polypeptide comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NO: 1-10 which are derived from the full-length Moraxella catarrhalis BC5 UspA1 & UspA2 sequences shown below, or a fragment, homologue, functional equivalent, derivative, degenerate or hydroxylation, sulphonation or glycosylation product or other secondary processing product thereof.









Full-length UspAl from Moraxella catarrhalis 



strain BC5 (SEQ ID NO: 32):



MNKIYKVKKN AAGHLVACSE FAKGHTKKAV LGSLLIVGIL 



 



GMATTASAQK VGKATNKISG GDNNTANGTY LTIGGGDYNK 



 



TKGRYSTIGG GLFNEATNEY STIGSGGYNK AKGRYSTIGG 



 



GGYNEATNQY STIGGGDNNT AKGRYSTIGG GGYNEATIEN 



 



STVGGGGYNQ AKGRNSTVAG GYNNEATGTD STIAGGRKNQ



 



ATGKGSFAAG IDNKANADNA VALGNKNTIE GENSVAIGSN 



 



NTVKKGQQNV FILGSNTDTT NAQNGSVLLG HNTAGKAATI 



 



VNSAEVGGLS LTGFAGASKT GNGTVSVGKK GKERQIVHVG 



 



AGEISDTSTD AVNGSQLHVL ATVVAQNKAD IKDLDDEVGL 



 



LGEEINSLEG EIFNNQDAIA KNQADIKTLE SNVEEGLLDL



 



SGRLLDQKAD IDNNINNIYE LAQQQDQHSS DIKTLKNNVE 



 



EGLLDLSGRL IDQKADLTKD IKALESNVEE GLLDLSGRLI 



 



DQKADIAKNQ ADIAQNQTDI QDLAAYNELQ DAYAKQQTEA 



 



IDALNKASSA NTDRIATAEL GIAENKKDAQ IAKAQANENK 



 



DGIAKNQADI QLHDKKITNL GILHSMVARA VGNNTQGVAT



 



NKADIAKNQA DIANNIKNIY ELAQQQDQHS SDIKTLAKVS 



 



AANTDRIAKN KAEADASFET LTKNQNTLIE QGEALVEQNK 



 



AINQELEGFA AHADVQDKQI LQNQADITTN KTAIEQNINR 



 



TVANGFEIEK NKAGIATNKQ ELILQNDRLN RINETNNHQD 



 



QKIDQLGYAL KEQGQHFNNR ISAVERQTAG GIANAIAIAT



 



LPSPSRAGEH HVLFGSGYHN GQAAVSLGAA GLSDTGKSTY 



 



KIGLSWSDAG GLSGGVGGSY RWK



 



Full-length UspA2 from Moraxella catarrhalis 



strain BC5 (SEQ ID NO: 33):



MKTMKLLPLK IAVTSAMIIG LGAASTANAQ AKNDITLEDL 



 



PYLIKKIDQN ELEADIGDIT ALEKYLALSQ YGNILALEEL 



 



NKALEELDED VGWNQNDIAN LEDDVETLTK NQNAFAEQGE 



 



AIKEDLQGLA DFVEGQEGKI LQNETSIKKN TQRNLVNGFE 



 



IEKNKDAIAK NNESIEDLYD FGHEVAESIG EIHAHNEAQN



 



ETLKGLITNS IENTNNITKN KADIQALENN VVEELFNLSG 



 



RLIDQKADID NNINNIYELA QQQDQHSSDI KTLKKNVEEG 



 



LLELSDHIID QKTDIAQNQA NIQDLATYNE LQDQYAQKQT 



 



EAIDALNKAS SENTQNIEDL AAYNELQDAY AKQQTEAIDA 



 



LNKASSENTQ NIQDLATYNE LQDAYAKQQA EAIDALNKAS



 



SENTQNIAKN QADIANNITN LYELAQQQDK HRSDIKTLAK 



 



TSAANTDRIA KNKADDDASF ETLTKNQNTL IEKDKEHDKL 



 



ITANKTAIDA NKASADTKFA ATADAFTKNG NAITKNAKSI 



 



TDLGTKVDGF DSRVTALDTK VNAFDGRITA LDSKVENGMA 



 



AQAALSGLFQ PYSVGKFNAT AALGGYGSKS AVAIGAGYRV



 



NPNLAFKAGA AINTSGNKKG SYNIGVNYEF






In a preferred embodiment, the ligand is a polypeptide [or polypeptide truncate compared with a wild-type polypeptide] comprising or consisting of an amino acid sequence selected from the group consisting of SEQ ID NO: 1-10, or a fragment, homologue, functional equivalent, derivative, degenerate or hydroxylation, sulphonation or glycosylation product or other secondary processing product thereof.
The term ligand is used herein to denote both the whole molecule which binds to laminin and/or fibronectin and/or C3 and any part thereof which includes a laminin and/or fibronectin and/or C3-binding domain such that it retains the respective binding property. Thus “ligand” encompasses molecules which consist only of the laminin and/or fibronectin and/or C3-binding domain i.e. the peptide region or regions required for binding.
For the purposes of this invention laminin, fibronectin or C3-binding properties of a polypeptide can be ascertained as follows:
For the purposes of this invention laminin, fibronectin or C3-binding properties of a polypeptide can be ascertained as follows: Polypeptides can be labelled with 125Iodine or other radioactive compounds and tested for binding in radio immunoassays (RIA) as fluid or solid phase (e.g., dot blots). Moreover, polypeptides can be analysed for binding with enzyme-linked immunosorbent assays (ELISA) or flow cytometry using appropriate antibodies and detection systems. Interactions between polypeptides and laminin, fibronectin, or C3 can further be examined by surface plasmon resonance (Biacore). Examples of methods are exemplified in detail in the Material and Methods section.
In another preferred embodiment, the polypeptide [or polypeptide truncate compared with a wild-type polypeptide] comprises or consists of at least one of the conserved sequences from within SEQ ID NO: 1-10 which are identified in the alignment shown herein. Hence, in this embodiment, the polypeptide [or polypeptide truncate compared with a wild-type polypeptide] comprises of consists of at least one of:
From UspA1 (conserved fragments from the fibronectin binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 34)


G T/V V S V G S/K Q/E/K/A G/N K/N/G/H/S E R Q I V


 


N/H V G A G Q/N/E/K I S/R A/D T/D S T D A V N G S


 


Q L H/Y A L A S/K/T T/A/V I/V 


 


(SEQ ID NO: 35)


S T D A V N G S Q L


 


(SEQ ID NO: 36)


L L N/D L S G R L L/I D Q K A D I D N N I N N/H I


 


Y E/D L A Q Q Q D Q H S S D I K T L K 


 


(SEQ ID NO: 37)


D Q K A D I D N N I N


 


(SEQ ID NO: 38)


L A Q Q Q D Q H S S D I K T L K






From UspA2 (conserved fragments from the fibronectin binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 39)


K A D I D N N I N N/H I Y E L A Q Q Q D Q H S S D


 


(SEQ ID NO: 40)


I K/Q T/A L K/E K/N/S N V/I E/V E G/EL L/F E/N L S


 


D/G H/R I/L I D Q K T/A D I/L A/T Q/K N/D 






From UspA2 (conserved fragments from the C3-binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 41)


I E/Q D L A A Y N E L Q D A Y A K Q Q A/T E A I D


 


A L N K A S S E N T Q N I A K N Q A D I A N N I


 


T/N N I Y E L A Q Q Q D K/Q H R/S S D I K T L A K


 


T/A S A A N T D/N R I 


 


(SEQ ID NO: 42)


D L A A Y N E L Q D A Y A K Q Q


 


(SEQ ID NO: 43)


E A I D A L N K A S S E N T Q N I A K N Q A D I A


 


N N I 






It will be understood that the polypeptide ligands of the invention can comprise a laminin and/or fibronectin and/or C3-binding domain of sequence recited herein which is modified by the addition or deletion of amino acid residues to or from the sequences recited herein at either or both the N or C termini, which modified peptides retain the ability to bind laminin and/or fibronectin and/or C3, respectively. Accordingly, the invention further provides a ligand comprising or consisting of a polypeptide in which 50, 40, 30, 20, 10, 5, 3 or 1 amino acid residues have been added to or deleted from an amino acid sequence recited herein at either or both the N or C termini, wherein said modified polypeptide retains the ability to bind laminin and/or fibronectin and/or C3; and/or elicit an immune response against the non-modified peptide. By extension it is meant lengthening the sequence using the context of the peptide from the full-length amino acid sequence from which it is derived.
As regards fragments of the polypeptides of the invention, any size fragment may be used in the invention (based on the homologue sequences/conserved regions/functional domatins discussed herein) provided that the fragment retains the ability to bind laminin and/or fibronectin and/or C3. It may be desirable to isolate a minimal peptide which contains only those regions required for receptor binding.
Polypeptide ligands according to the invention may be derived from known Moraxella catarrhalis UspA1 or UspA2 proteins by truncation at either or both of the N- and C-termini. Truncates are not the full-length native UspA1 or A2 molecules. Accordingly, the invention further provides a wild-type UspA1 sequence lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160 etc to 298 amino acids from the N-terminus, and/or lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160, 180, 200 etc to 450 amino acids from the C-terminus. Preferably, the truncate retains fibronectin binding function (optionally also laminin and/or C3-binding).







TABLE 3





Possible combinations of truncations to the N- and C- termini of wild-type UspA1 protein.


No. of amino acids lacking, at least or exactly:
















From the N-



terminus
From the C-terminus

























0
X
20
30
40
50
60
70
80
100
120
140
160
180
200
220


20
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


30
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


40
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


50
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


60
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


70
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


80
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


100
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


120
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


140
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


160
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


180
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


200
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


220
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


240
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


260
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


280
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220


298
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220











From the N-



terminus
From the C-terminus






















0
240
260
280
300
320
340
360
380
400
420
440
450


20
240
260
280
300
320
240
360
380
400
420
440
450


30
240
260
280
300
320
240
360
380
400
420
440
450


40
240
260
280
300
320
240
360
380
400
420
440
450


50
240
260
280
300
320
240
360
380
400
420
440
450


60
240
260
280
300
320
240
360
380
400
420
440
450


70
240
260
280
300
320
240
360
380
400
420
440
450


80
240
260
280
300
320
240
360
380
400
420
440
450


100
240
260
280
300
320
240
360
380
400
420
440
450


120
240
260
280
300
320
240
360
380
400
420
440
450


140
240
260
280
300
320
240
360
380
400
420
440
450


160
240
260
280
300
320
240
360
380
400
420
440
450


180
240
260
280
300
320
240
360
380
400
420
440
450


200
240
260
280
300
320
240
360
380
400
420
440
450


220
240
260
280
300
320
240
360
380
400
420
440
450


240
240
260
280
300
320
240
360
380
400
420
440
450


260
240
260
280
300
320
240
360
380
400
420
440
450


280
240
260
280
300
320
240
360
380
400
420
440
450


298
240
260
280
300
320
240
360
380
400
420
440
450









Accordingly the invention further provides a wild-type UspA2 sequence lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160, 164 amino acids from the N-terminus, and/or lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 180, 200 etc to 312 amino acids from the C-terminus. Preferably, the truncate retains fibronectin binding function (optionally also laminin and/or C3-binding). Possible truncates may be selected from those shown in the following table, all of which are within the scope of the invention.







TABLE 4







Possible combinations of truncations to the N- and C- termini of wild-type UspA2 protein


No. of amino acids lacking, at least or exactly








From the N-



terminus
From the C-terminus






























0
X
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


20
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


30
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


40
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


50
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


60
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


70
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


80
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


100
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


120
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


140
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


160
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312


164
0
20
30
40
50
60
70
80
100
120
140
160
180
200
220
240
260
280
300
312









Accordingly the invention further provides a wild-type UspA2 sequence lacking at least (or exactly) 5, 10, 15, 20, 25 or 29 amino acids from the N-terminus, and/or lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160, 180, 200 etc to 453 amino acids from the C-terminus. Preferably, the truncate retains laminin binding function (optionally also fibronectin and/or C3-binding). Possible truncates may be selected from those shown in the following table, all of which are within the scope of the invention.







TABLE 5







Possible combinations of truncations to the N- and


C- termini of wild-type UspA2 protein


No. of amino acids lacking, at least or exactly:










From the C-




terminus
From the N-terminus




















0
X
5
10
15
20
25
29



20
0
5
10
15
20
25
29



30
0
5
10
15
20
25
29



40
0
5
10
15
20
25
29



50
0
5
10
15
20
25
29



60
0
5
10
15
20
25
29



70
0
5
10
15
20
25
29



80
0
5
10
15
20
25
29



100
0
5
10
15
20
25
29



120
0
5
10
15
20
25
29



140
0
5
10
15
20
25
29



160
0
5
10
15
20
25
29



180
0
5
10
15
20
25
29



200
0
5
10
15
20
25
29



220
0
5
10
15
20
25
29



240
0
5
10
15
20
25
29



260
0
5
10
15
20
25
29



280
0
5
10
15
20
25
29



300
0
5
10
15
20
25
29



320
0
5
10
15
20
25
29



340
0
5
10
15
20
25
29



360
0
5
10
15
20
25
29



380
0
5
10
15
20
25
29



400
0
5
10
15
20
25
29



420
0
5
10
15
20
25
29



440
0
5
10
15
20
25
29



453
0
5
10
15
20
25
29










Accordingly the invention further provides a wild-type UspA2 sequence lacking (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160 etc. to 301 amino acids from the N-terminus, and/or lacking at least (or exactly) 20, 30, 40, 50, 60, 70, 80, 100, 120, 140, 160 or 172 amino acids from the C-terminus. Preferably, the truncate retains C3 binding function (optionally also fibronectin and/or laminin binding). Possible truncates may be selected from those shown in the following table, all of which are within the scope of the invention.







TABLE 6







Possible combinations of truncations to the N- and


C- termini of wild-type UspA2 protein


No. of amino acids lacking, at least or exactly:








From the N-



terminus
From the C-terminus























0
X
20
30
40
50
60
70
80
100
120
140
160
172


20
0
20
30
40
50
60
70
80
100
120
140
160
172


30
0
20
30
40
50
60
70
80
100
120
140
160
172


40
0
20
30
40
50
60
70
80
100
120
140
160
172


50
0
20
30
40
50
60
70
80
100
120
140
160
172


60
0
20
30
40
50
60
70
80
100
120
140
160
172


70
0
20
30
40
50
60
70
80
100
120
140
160
172


80
0
20
30
40
50
60
70
80
100
120
140
160
172


100
0
20
30
40
50
60
70
80
100
120
140
160
172


120
0
20
30
40
50
60
70
80
100
120
140
160
172


140
0
20
30
40
50
60
70
80
100
120
140
160
172


160
0
20
30
40
50
60
70
80
100
120
140
160
172


180
0
20
30
40
50
60
70
80
100
120
140
160
172


200
0
20
30
40
50
60
70
80
100
120
140
160
172


220
0
20
30
40
50
60
70
80
100
120
140
160
172


240
0
20
30
40
50
60
70
80
100
120
140
160
172


260
0
20
30
40
50
60
70
80
100
120
140
160
172


280
0
20
30
40
50
60
70
80
100
120
140
160
172


290
0
20
30
40
50
60
70
80
100
120
140
160
172


301
0
20
30
40
50
60
70
80
100
120
140
160
172









Known wild-type UspA1 sequences that may be truncated in this way are those of strains ATCC25238 (MX2; GenBank accession no. AAD43465), P44 (AAN84895), O35E (AAB96359), TTA37 (AAF40122), O12E (AAF40118), O46E (AAF36416), V1171 (AAD43469), TTA24 (AAD43467) (see Table 1/FIG. 19); or BC5 (see above). Known wild-type UspA2 sequences that may be truncated in this way are those of strains O35E (GenBank accession no. O4407), MC317 (GenBank accession no. Q58XP4), E22 (GenBank accession no. Q848S1), V1122 (GenBank accession no. Q848S2), P44 (GenBank accession no. Q8GH86), TTA37 (GenBank accession no. Q9L961), O46E (GenBank accession no. Q9L962), O12E (GenBank accession no. Q9L963), V1171 (GenBank accession no. Q9XD51), TTA24 (GenBank accession no. Q9XD53), SP12-5 (GenBank accession no. Q8RTB2), ATCC25238 (GenBank accession no. Q9XD55) (see Table 2/FIG. 20); or BC5 [Forsgren_UspA2] (see above).
Ideally the UspA1 or UspA2 truncate of this embodiment comprises or consists of an amino acid sequence selected from the group consisting of SEQ ID NO: 1-10 or a fragment, homologue, functional equivalent, derivative, degenerate or hydroxylation, sulphonation or glycosylation product or other secondary processing product thereof; or comprises or consists of at least one of the conserved sequences from within these regions which are identified in the alignment shown in herein, for example:
From UspA1 (conserved fragments from the fibronectin binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 44)


G T/V V S V G S/K Q/E/K/A G/N K/N/G/H/S E R Q I V


 


N/H V G A G Q/N/E/K I S/R A/D T/D S T D A V N G S


 


Q L H/Y A L A S/K/T T/A/V I/V 


 


(SEQ ID NO: 45)


S I D A V N G S Q L


 


(SEQ ID NO: 46)


L L N/D L S G R L L/I D Q K A D I D N N I N N/H I


 


Y E/D L A Q Q Q D Q H S S D I K T L K 


 


(SEQ ID NO: 47)


D Q K A D I D N N I N


 


(SEQ ID NO: 48)


L A Q Q Q D Q H S S D I K T L K






From UspA2 (conserved fragments from the fibronectin binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 49)


K A D I D N N I N N/H I Y E L A Q Q Q D Q H S S D


 


(SEQ ID NO: 50)


I K/Q T/A L K/E K/N/S N V/I E/V E G/E L L/F E/N L


 


S D/G H/R I/L I D Q K T/A D I/L A/T Q/K N/D 






From UspA2 (conserved fragments from the C3-binding domain—‘/’ separating alternative choices of an amino acid at a position)







(SEQ ID NO: 51)


I E/Q D L A A Y N E L Q D A Y A K Q Q A/T E A I D


 


A L N K A S S E N T Q N I A K N Q A D I A N N I 


 


T/N N I Y E L A Q Q Q D K/Q H R/S S D I K T L A 


 


K T/A S A A N T D/N R I


 


(SEQ ID NO: 52)


D L A A Y N E L Q D A Y A K Q Q


 


(SEQ ID NO: 53)


E A I D A L N K A S S E N T Q N I A K N Q A D I


 


A N N I 






It may be convenient to produce fusion proteins containing polypeptide ligands as described herein. Accordingly, in a further embodiment, the invention provides fusion proteins comprising polypeptide ligands according to the invention. Preferably a fusion protein according to this embodiment is less than 50% identical to any known fully length sequence over its entire length. Such fusions can constitute a derivative of the polypeptides of the invention. Further derivatives can be the use of the polypeptides of the invention to as a carrier to covalently couple peptide or saccharide moieties. They may be coupled for instance to pneumococcal capsular oligosaccharides or polysaccharides, or Moraxella catarrhalis lipooligosaccaharides, or non-typeable Haemophilus influenzae lipooligosaccaharides.
Homologous peptides of the invention may be identified by sequence comparison. Homologous peptides are preferably at least 60% identical, more preferably at least 70%, 80%, 90%, 95% or 99% identical in ascending order of preference to the peptide sequence disclosed herein or fragments thereof or truncates of the invention over their entire length. Preferably the homologous peptide retains the ability to bind fibronectin and/or laminin and/or C3; and/or elicit an immune response against the peptide sequences disclosed herein or fragment thereof.
FIGS. 19 and 20 show an alignment of peptide sequences of UspA1 and UspA2 of different origin which indicates regions of sequence that are capable of being modified to form homologous sequences whilst retained function (i.e. fibronectin and/or laminin and/or C3 binding ability). Homologous peptides to the BC5 SEQ ID NO: 1-10 peptides are for instance those sequences corresponding to the BC5 sequence from other strains in FIGS. 19 and 20.
Vaccines of the Invention
The polypeptides/peptides/functional domains/homologues/fragments/truncates/derivatives of the invention should ideally be formulated as a vaccine comprising an effective amount of said component(s) and a pharmaceutically acceptable excipient.
The vaccines of the invention can be used for administration to a patient for the prevention or treatment of Moraxella catarrhalis infection or otitis media or sinusitis or lower respiratory tract infections. They may be administered in any known way, including intramuscularly, parenternally, mucosally and intranasally.
Combination Vaccines of the Invention
The vaccines of the present invention may be combined with other Moraxella catarrhalis antigens for prevention or treatment of the aforementioned diseases.
The present inventors have found in particular that Moraxella catarrhalis has at least 2 means of hampering the host immune system from attacking the organism. In addition to the interaction with C3 (and C4BP) mentioned in the Examples below, M. catarrhalis has a strong affinity for soluble and membrane bound human IgD through protein MID (also known as OMP106). Moraxella-dependent IgD-binding to B lymphocytes results in a polyclonal immunoglobulin synthesis which may prohibit production of specific monoclonal anti-moraxella antibodies. The fact that M. catarrhalis hampers the human immune system in several ways might explain why M. catarrhalis is such a common inhabitant of the respiratory tract.
The inventors believe that the combination of antigens involved in the IgD-binding function (MID) and C3-binding function (UspA1 and/or UspA2) can provide an immunogenic composition giving the host enhanced defensive capabilities against Moraxella's hampering of the human immune system thus providing an enhanced decrease in M. catarrhalis carriage on mucosal surfaces.
A further aspect of the invention is therefore a vaccine composition comprising an effective amount of UspA1 and/or UspA2 (particularly the latter) (for instance full-length polypeptides or polypeptides/peptides/functional domains/homologues/fragments/truncates/derivatives of the invention as described herein, preferably which retains a C3-binding function) in combination with an effective amount of protein MID (for instance full-length polypeptides or polypeptides/peptides/functional domains/homologues/fragments/truncates/derivatives thereof, preferably which retain a human IgD-binding function), and a pharmaceutically acceptable excipient.
Protein MID, and IgD-binding homologous/fragments/truncates thereof is described in WO 03/004651 (incorporated by reference herein). Particularly suitable fragments for this purpose is a polypeptide comprising (or consisting of) the F2 fragment described in WO 03/004651, or sequences with at least 60, 70, 80, 90, 95, 99% identity thereto which preferably retain human IgD-binding activity.
The MID and UspA components of this combination vaccine may be separate from each other, or may be conveniently fused together by known molecular biology techniques.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows thirteen M. catarrhalis strains tested for fibronectin binding (FIG. 1A). Strong fibronectin binding correlated to UspA1/A2 expression as detected by anti-UspA1/A2 pAb (FIG. 1B (wild type), FIG. 1C (ΔuspA1), FIG. 1D (ΔuspA2), FIG. 1E (ΔuspA1/A2), FIG. 1F (wild type), FIG. 1G (ΔuspA1), FIG. 1H (ΔuspA2), FIG. 1I (ΔuspA1/A2)). Flow cytometry profiles of M. catarrhalis BBH18 wild type and UspA1/A2 deficient mutants show an UspA1/A2-dependent binding to soluble fibronectin. The profiles of wild type clinical isolate (FIG. 1B and FIG. 1F) and corresponding mutants devoid of UspA1 (FIG. 1C and FIG. 1G), or UspA2 (FIG. 1D and FIG. 1H), and double mutants (FIG. 1E and FIG. 1I) lacking both UspA1 and UspA2 are shown. Bacteria were incubated with rabbit anti-UspA1/A2 or fibronectin followed by an anti-fibronectin pAb. FITC-conjugated rabbit pAb was subsequently added followed by flow cytometry analysis. A typical experiment out of three with the mean fluorescence intensity (MFI) for each profile is shown.
FIG. 2 shows that M. catarrhalis RH4 UspA2 deficient mutants do not bind 125I-labeled fibronectin. E. coli BL21 was included as a negative control not binding fibronectin. Bacteria were incubated with 125I-labeled fibronectin followed by several washes and analyzed in a gamma counter. Fibronectin binding to the RH4 wild type expressing both UspA1 and A2 was set as 100%. The mean values of three independent experiments are shown. Error bars represent standard deviations (SD). Similar results were obtained with M. catarrhalis BBH18.
FIG. 3 shows pictures that verify that M. catarrhalis mutants devoid of UspA1 and UspA2 do not bind to immobilized fibronectin. M. catarrhalis wild type was able to adhere at a high density on fibronectin coated glass slides (FIG. 3A). M. catarrhalis ΔuspA1 mutant was also retained at a high density (FIG. 3B), whereas M. catarrhalis ΔuspA2 and ΔuspA1/A2 double mutants adhered poorly (FIG. 3C and FIG. 3D). Glass slides were coated with fibronectin and incubated with M. catarrhalis RH4 and its corresponding UspA1/A2 mutants. After several washes, bacteria were Gram stained.
FIG. 4 is a graph showing that recombinant UspA1 and A2 bind to fibronectin in a dose-dependent manner. Specific fibronectin binding is shown for UspA150-770 and UspA230-539. Both UspA proteins (40 nM) were coated on microtiter plates and incubated with increasing concentrations of fibronectin followed by detection with rabbit anti-human fibronectin pAb and HRP-conjugated anti-rabbit pAb. Mean values of three separate experiments are shown and error bars indicate SD.
FIG. 5. The active fibronectin binding domains for UspA1 and UspA2 are located between amino acids 299 to 452 and 165 to 318, respectively. Truncated proteins derived from UspA1 (FIG. 5A) and UspA2 (FIG. 5B) are shown. All fragments were tested for fibronectin binding in ELISA. Forty nM of each truncated fragment was coated on microtiter plates and incubated with 80 μg/ml and 120 μg/ml fibronectin for UspA1 and UspA2, respectively. Bound fibronectin was detected with rabbit anti-fibronectin pAb followed by HRP-conjugated anti-rabbit pAb. Results are representative for three sets of experiments. Error bars represent SD.
FIG. 6 shows the sequence according to sequence ID No. 1, and the sequence homology between UspA1300-453 (SEQ ID NO: 87) and UspA2165-318 (SEQ ID NO: 3). The 31 identical amino acid residues are within brackets.
FIG. 7 shows that truncated UspA150-491 and UspA1299-452 fragments competitively inhibit M. catarrhalis UspA-dependent fibronectin binding. M. catarrhalis ΔuspA1/A2 double mutants, which do not bind fibronectin, were included as negative controls. UspA1 recombinant proteins were pre-incubated with 2 mg/100 ml fibronectin before incubation with M. catarrhalis. The mean fluorescence values (MFI) of M. catarrhalis with bound fibronectin detected by FITC conjugated anti-fibronectin pAb in flow cytometry are shown. UspA150-491 and UspA1299-452 resulted in 95% and 63% inhibition respectively. Error bars represent mean±SD of three independent experiments.
FIG. 8 shows that UspA1299-452 and UspA2165-318 inhibit M. catarrhalis adherence to Chang conjunctival cells via cell-associated fibronectin. Chang epithelial cells expressed fibronectin on the surface as revealed by an anti-fibronectin pAb and flow cytometry (FIG. 8A). Pre-incubation with the fibronectin binding proteins UspA1299-452, UspA2165-318, or anti-fibronectin pAb resulted in significantly reduced binding by M. catarrhalis RH4 as compared to control recombinant proteins (UspA1433-580 and UspA230-177) and a control antibody (anti-ICAM1 mAb) (FIG. 8B). P<0.05 by two-tailed paired Student's t test. Mean values of three separate experiments are shown and error bars indicate SD.
FIG. 9 (FIG. 9A) shows binding of M. catarrhalis RH4 to laminin via UspA1 and A2. M. catarrhalis RH4 wild type (wt) strongly bound to immobilized laminin with a mean OD of 1.27. RH4ΔuspA1 showed mean OD of 1.14 (89.8% of the wild type). RH4ΔuspA2 and the double mutant RH4ΔuspA1/A2 had a mean OD of 0.19 and 0.23 respectively (15.0% and 18.1% of the wild type). This was not significantly different from the residual adhesion to bovine serum albumin coated plates. Thirty μg/ml of laminin or bovine serum albumin were coated on microtiter plates. They were blocked followed by incubation with bacteria suspension and finally washed. Bound bacteria was detected with anti-MID pAb and HRP-conjugated anti-rabbit pAb. The mean results of 3 representative experiments are shown. Error bars represent standard deviations (SD).
FIG. 9 (FIG. 9B) shows the binding of recombinant UspA1 and A2 laminin in a dose-dependent manner. Specific laminin binding is shown for UspA150-770 and UspA230-539. Both UspA proteins (40 nM) were coated on microtiter plates and incubated with increasing concentrations of laminin followed by detection with rabbit anti-laminin pAb and HRP-conjugated anti-rabbit pAb. Mean values of three separate experiments are shown and error bars indicate SD.
FIG. 10 (FIG. 10A and FIG. 10B) shows that the active laminin binding domains for UspA150-770 (FIG. 10A) and UspA230-539 (FIG. 10B) are located in the N-terminal halves. Forty nM of recombinant UspA150-770 and UspA230-539 together with the truncated proteins were coated on microtiter plates and incubated with 20 μg/ml of laminin followed by detection with rabbit anti-laminin pAb and HRP-conjugated anti-rabbit pAb. Mean values of three separate experiments are shown and error bars indicate SD.
FIG. 11 is a schematic illustration of C3, covalent bound C3b and C3met. (FIG. 11A) The C3-molecule in serum consists of one α-chain and one β-chain. (FIG. 11B) The α-chain contains an internal thioester site that after activation can attach covalently to a microbial surface. (FIG. 11C) The C3 has been treated with methylamine, which becomes covalently attached to the thioester.
FIG. 12 illustrates that M. catarrhalis counteracts the classical and alternative pathways of the complement system by the outer membrane proteins UspA1 and A2. (FIG. 12A) M. catarrhalis RH4 wild-type (wt), the ΔuspA1, the ΔuspA2 or the ΔuspA1/A2 mutants were incubated in the presence of 10% NHS. (FIG. 12B) The ΔuspA1/A2 mutant was incubated with 10% NHS supplemented with either EDTA or Mg-EGTA. Bacteria were collected at the indicated time points. After overnight incubation, colony forming units (cfu) were counted. The number of bacteria at the initiation of the experiments was defined as 100%. Mean values of three separate experiments are shown and error bars indicate S.D. (FIG. 12A) The mean values after 5 min for the ΔuspA1, the ΔuspA2 or the ΔuspA1/A2 mutants were significantly different from the wild-type (P<0.05). (FIG. 12B) The mean values after 5 min for the ΔuspA1/A2 mutant and after 10 min for the ΔuspA1/A2 mutant incubated Mg-EGTA were significantly different from the wild-type (P<0.05).
FIG. 13 illustrates that Moraxella catarrhalis binds C3 in serum independently of complement activation. Flow cytometry profiles showing C3 binding to (FIG. 13A) M. catarrhalis RH4 or (FIG. 13B) Streptococcus pneumoniae. Bacteria were incubated with NHS or NHS pretreated with EDTA. Thereafter, a rabbit anti-human C3d pAb and as a secondary layer a FITC-conjugated goat anti-rabbit pAb were added followed by flow cytometry analysis. Bacteria in the absence of NHS, but in the presence of both pAb, were defined as background fluorescence. One representative experiment out of three is shown.
FIG. 14 illustrates that M. catarrhalis non-covalently binds purified methylamine-treated C3 in a dose-dependent manner, and that the binding is based on ionic interactions. Flow cytometry profiles showing (FIG. 14A) binding with increasing concentrations of C3met. (FIG. 14B) The mean fluorescence intensity (mfi) of each profile in panel (FIG. 14A) is shown in (FIG. 14B). (FIG. 14C) C3met binding of RH4 decreases with increasing concentrations of NaCl. Bacteria were incubated with C3met with or without NaCl as indicated. C3met binding was measured by flow cytometry as described in FIG. 3. Error bars indicate SD. *P≦0.05, **P≦0.01, ***P≦0.001.
FIG. 15 illustrates that flow cytometry profiles of M. catarrhalis RH4 wild type and UspA1/A2 deficient mutants show a UspA1/UspA2-dependent C3met/C3 binding. The profiles of a wild type clinical isolate (FIG. 15A, FIG. 15F, FIG. 15K) and corresponding mutants devoid of protein MID (FIG. 15B, FIG. 15G, FIG. 15L), UspA1 (FIG. 15C, FIG. 15H, FIG. 15M), UspA2 (FIG. 15D, FIG. 15I, FIG. 15N), or both UspA1 and UspA2 (FIG. 15E, FIG. 15J, FIG. 15O) are shown. Bacteria were incubated with C3met (FIG. 15A, FIG. 15B, FIG. 15C, FIG. 15D, FIG. 15E), NHS-EDTA (FIG. 15F, FIG. 15G, FIG. 15H, FIG. 15I, FIG. 15J) or NHS (FIG. 15K, FIG. 15L, FIG. 15M, FIG. 15N, FIG. 15O) and detected as outlined in FIG. 3. One typical experiment out of three with the mean fluorescence intensity (mfi) for each profile is shown.
FIG. 16 illustrates that C3met binds to purified recombinant UspA230-539, whereas only a weak C3met binding to UspA150-770 is observed. Furthermore, the C3met binding region of UspA2 was determined to be located between the amino acid residues 200 to 458. (FIG. 16A) The recombinant UspA150-770 and UspA230-539 were immobilized on a nitrocellulose membrane. The membrane was incubated with [125I]-labelled C3met overnight and bound protein was visualized with a Personal FX (Bio-Rad) using intensifying screens. The recombinant protein MID962-1200 was included as a negative control. (FIG. 16B) UspA150-770, UspA230-539 and a series of truncated UspA2 proteins were coated on microtiter plates and incubated with C3met, followed by incubation with goat anti-human C3 pAb and HRP-conjugated anti-goat pAb. The mean values out of three experiments are shown. The background binding was subtracted from all samples. Error bars correspond to S.D. *P≦0.05, **P≦0.01, ***P≦0.001.
FIG. 17 illustrates that addition of recombinant UspA150-770 and UspA230-539 to serum inhibit C3b deposition and killing of M. catarrhalis via the alternative pathway. Flow cytometry profiles show C3b-deposition on RH4ΔuspA1/A2 after incubation with (FIG. 17A) NHS or NHS preincubated with recombinant (rec.) UspA150-770 and UspA230-539, or (FIG. 17B) NHS-Mg-EGTA or NHS-Mg-EGTA preincubated with UspA150-770 and UspA230-539. After addition of the various NHS combinations, bacteria were analyzed as described in FIG. 13. (FIG. 17C) RH4ΔuspA1/A2 was incubated with 10% NHS or NHS-Mg-EGTA. For inhibition, the NHS-Mg-EGTA was incubated with 100 nM UspA150-770 and/or UspA230-539 before addition of bacteria. Bacteria were collected at the indicated time points. The number of bacteria at the initiation of the experiments was defined as 100%. Mean values of three separate experiments are shown and error bars indicate S.D. The time points 10, 20 and 30 min for the ΔuspA1/A2 mutant preincubated with recombinant proteins were significantly different from the ΔuspA1/A2 mutant incubated with Mg-EGTA alone (P<0.05).
FIG. 18 illustrates that recombinant UspA150-770 and UspA230-539 decrease haemolysis of rabbit erythrocytes by inhibition of the alternative pathway. NHS was incubated with or without 100 nM UspA150-770 and/or UspA230-539 at 37° C. for 30 min. NHS at the indicated concentrations was thereafter added to rabbit erythrocytes. After incubation for 30 min, the suspensions were centrifuged and the supernatants were measured by spectrophotometry. Maximum haemolysis in each experiment was defined as 100%. Mean values of three separate experiments are shown and error bars correspond to S.D. The results obtained with NHS+UspA230-539 and NHS+UspA150-770/UspA230-539 at NHS concentrations of 2, 3 and 4% were significantly different from the NHS control (P<0.05).
FIG. 19 (FIG. 19A, FIG. 19B, FIG. 19C, FIG. 19D) illustrate a pileup-analysis of UsPa1 for eight different strains, to show the homology of different parts of UspA1 (SEQ ID NOS 11-18 are disclosed respectively in order of appearance). Each page, and hence each of FIG. 19A, FIG. 19B, FIG. 19C, FIG. 19D, represents a different portion of the alignment, which was too large to fit in one page.
FIG. 20 (FIG. 20A, FIG. 20B, FIG. 20C, FIG. 20D, FIG. 20E, FIG. 20F, FIG. 20G, FIG. 20H, FIG. 20I, FIG. 20J) illustrate a pileup-analysis of UsPa2 for thirteen different strains to show the homology of different parts of UspA2 (SEQ ID NOS 19-31 are disclosed respectively in order of appearance). Each page, and hence each of FIG. 20A, FIG. 20B, FIG. 20C, FIG. 20D, FIG. 20E, FIG. 20F, FIG. 20G, FIG. 20H, FIG. 20I, FIG. 20J, represents a different portion of the alignment, which was too large to fit in one page.
FIG. 21 illustrates % identity in regions identified on Forsgren sequence computed as the ratio between the number of exact matches and the length of the region alignment, where the region alignment is that part of the above total alignment containing the Forsgren region.



MATERIALS AND METHODS
Interaction Between M. catarrhalis and Fibronectin Bacterial Strains and Culture Conditions
The sources of the clinical M. catarrhalis strains are listed in table 7. M. catarrhalis BBH18 and RH4 mutants were constructed as previously described. [23, 58] The M. catarrhalis strains were routinely cultured in brain heart infusion (BHI) liquid broth or on BHI agar plates at 37° C. The UspA1-deficient mutants were cultured in BHI supplemented with 1.5 μg/ml chloramphenicol (Sigma, St. Louis, Mo.), and UspA2-deficient mutants were incubated with 7 μg/ml zeocin (Invitrogen, Carlsbad, Calif.). Both chloramphenicol and zeocin were used for growth of the double mutants.







TABLE 7







Clinical strains of M. catarrhalis used in the


present study











Strain
Clinical Source
Reference







BBH18
Sputum
[53]



D1
Sputum
[53]



Ri49
Sputum
[53]



C10
Sputum
[10]



F16
Sputum
[10]



Bro2
Respiratory tract
[53]



Z14
Pharynx
[10]



S6-688
Nasopharynx
[23]



Bc5
Nasopharynx
[20]



RH4
Blood
[53]



RH6
Blood
[53]



R14
Unknown
[10]



R4
Unknown
[10]



SÖ-1914
Tympanic cavity aspirate
[23]







Note:



The strains C10, R4 did not have the uspA1 gene, whereas F16, R14, Z14 lacked the uspA2 gene.[10] The remaining strains contained both uspA1 and A2 genes (data not shown).






DNA Method

To detect the presence uspA1, A2, and A2H genes in those strains which this was unknown, primers and PCR conditions as described by Meier et al. was used. [50] Partial sequencing was also carried out with the UspA1299-452 and UspA2165-318 5′ and 3′ primers of the respective uspA1 and uspA2 gene of RH4 and BBH18. Confirmation of the presence of the amino acid residues “DQKADIDNNINNIYELAQQQDQHSSDIKTLK” (SEQ ID NO: 1) was also performed by PCR with a primer (5′-CAAAGCTGACATCCAAGCACTTG-3′) (SEQ ID NO: 54) designed from the 5′ end of this sequence and 3′ primers for uspA1 and A2 as described by Meier at al. [50]
Recombinant Proteins Construction and Expression
Recombinant UspA150-770 and UspA230-539, which are devoid of their hydrophobic C-termini, has recently been described. [58] The genomic DNA was extracted from M. catarrhalis Bc5 using a DNeasy tissue kit (Qiagen, Hilden, Germany). In addition, recombinant proteins corresponding to multiple regions spanning UspA150-770 and UspA230-539 were also constructed by the same method. The primers used are listed in table 8. All constructs were sequenced according to standard methods. Expression and purification of the recombinant proteins were done as described previously. [59] Proteins were purified using columns containing a nickel resin (Novagen) according to the manufacturer's instructions for native conditions. The recombinant proteins were analyzed on SDS-PAGE as described. [21] Table 8. Primers used in this present study (5′ primers are disclosed as SEQ ID NOS 55-69, respectively, in order of appearance; 3′ primers are disclosed as SEQ ID NOS 70-84, respectively, in order of appearance)












Protein
5′ primer
3′ primer







UspA150-770
gcgtctgcggatccagtag
ccctgaagctttagtgcata



gcaaggcaacc
acctaattg


 


UspA150-491
gcgtctgcggatccagtag
ttgagcaagcttagcttggt



gcaaggcaacc
ttttagcg


 


UspA150-197
gcgtctgcggatccagtag
acctgtggcaagcttcttcc



gcaaggcaacc
tgcc


 


UspA150-321
gcgtctgcggatccagtag
ggtgtcactaagcttacctg



gcaaggcaacc
caccaacatgaac


 


UspA1299-452
ggatttgcaggtgcatcgg
gtcttttgtaagatcaagct



atcctggtaatggtact
tttgatcaat


 


UspA1433-580
catagctctgatatggatc
catgctgagaagcttaccta



cacttaaaaac
gattgg


 


UspA1557-704
gccaaagcacaagcggatc
ggtcttattggtagtaagct



caaataaagac
tagcttggg


 


UspA1680-770
gttgagcaaaaggatccca
ccctgaagctttagtgcata



tcaatcaagag
acctaattg


 


UspA230-539
cgaatgcggatcctaaaaa
cattaagcttggtgtctaat



tgatataactttagagg
gcagttac


 


UspA230-177
cgaatgcggatcctaaaaa
ctcatgaccaaaatcaagct



tgatataactttagagg
tatcttcgatagactc


 


UspA2101-240
gatattgcggatccggaag
gatcaataagcttaccgctt



atgatgttgaaac
agattgaatagttcttc


 


UspA2101-318
gatattgcggatccggaag
gtcaatcgcttcaagcttct



atgatgttgaaac
tttgagcatactg


 


UspA2165-318
gagattgagaaggatccag
gtcaatcgcttcaagcttct



atgctattgct
tttgagcatactg


 


UspA2302-458
gctcaaaaccaagcggatc
ggtgagcgtttcaagctttg



cccaagatctg
catcagcatcggc


 


UspA2446-539
gcaagtgctgcggatcctg
cattaagcttggtgtctaat



atcgtattgct
gcagttac









Antibodies

Rabbit anti-UspA1/A2 polyclonal antibodies (pAb) were recently described in detail. [58] The other antibodies used were rabbit anti-human fibronectin pAb, swine FITC-conjugated anti-rabbit pAb, swine horseradish peroxidase (HRP) conjugated anti-rabbit pAb and finally a mouse anti-human CD54 (ICAM1) monoclonal antibody (mAb). Antibodies were from Dakopatts (Glostrup, Denmark).
Flow Cytometry Analysis
The UspA1/A2-protein expression and the capacity of M. catarrhalis to bind fibronectin were analyzed by flow cytometry. M. catarrhalis wild type strains and UspA1/A2-deficient mutants were grown overnight and washed twice in phosphate buffered saline containing 3% fish gelatin (PBS-gelatin). The bacteria (108) were then incubated with the anti-UspA1/A2 antiserum or 5 μg fibronectin (Sigma, St Louis, Mo.). They were then washed and incubated for 30 min at room temperature (RT) with FITC-conjugated anti-rabbit pAb (diluted according to the manufacturer's instructions) or with 1/100 dilution of rabbit anti-human fibronectin pAb (if fibronectin was first added) for 30 min at RT before incubation with the FITC-conjugated anti-rabbit pAb. After three additional washes, the bacteria were analyzed by flow cytometry (EPICS, XL-MCL, Coulter, Hialeah, Fla.). All incubations were kept in a final volume of 100 μl PBS-gelatin and the washings were done with the same buffer. Anti-fibronectin pAb and FITC-conjugated anti-rabbit pAb were added separately as a negative control for each strain analyzed. Fibronectin inhibition studies were carried out by pre-incubating 0.25 μmoles of UspA fragments for 1 h with 2 μg of fibronectin before incubation with M. catarrhalis bacteria (108). The residual free amount of fibronectin that bound to M. catarrhalis was determined by flow cytometry as outlined above.
Binding of M. catarrhalis to Immobilized Fibronectin
Glass slides were coated with 30 μl aliquots of fibronectin (1 mg/ml) and air dried at RT. After washing once with PBS, the slides were incubated in Petri dishes with pre-chilled bacteria at late exponential phase (optical density (OD) at 600 nm=0.9). After 2 h at RT, glass slides were washed once with PBS followed by Gram staining.

Protein Labeling and Radio Immunoassay (RIA)

Fibronectin was 125Iodine labeled (Amersham, Buckinghamshire, England) to a high specific activity (0.05 mol iodine per mol protein) with the Chloramine T method. [21] M. catarrhalis strains BBH18 and RH4 together with their corresponding mutants were grown overnight on solid medium and were washed in PBS with 2% bovine serum albumin (BSA). Bacteria (108) were incubated for 1 h at 37° C. with 125I-labeled fibronectin (1600 kcpm/sample) in PBS containing 2% BSA. After three washings with PBS 2% BSA, 125I-labeled fibronectin bound to bacteria was measured in a gamma counter (Wallac, Espoo, Finland).
Enzyme-Linked Immunosorbent Assay (ELISA)
Microtiter plates (Nunc-Immuno Module; Roskilde, Denmark) were coated with 40 nM of purified recombinant UspA150-770 and UspA230-539 proteins in 75 mM sodium carbonate, pH 9.6 at 4° C. overnight. Plates were washed four times with washing buffer (50 mM Tris-HCl, 0.15 M NaCl, and 0.1% Tween 20, pH 7.5) and blocked for 2 h at RT with washing buffer containing 3% fish gelatin. After four additional washings, the wells were incubated for 1 h at RT with fibronectin (120 μg/ml) diluted in three-fold step in 1.5% fish gelatin (in wash buffer). Thereafter, the plates were washed and incubated with rabbit anti-human fibronectin pAb for 1 h. After additional washings, HRP-conjugated anti-rabbit pAb was added and incubated for 1 h at RT. Both the antihuman fibronectin and HRP-conjugated anti-rabbit pAb were diluted 1:1,000 in washing buffer containing 1.5% fish gelatin. The wells were washed four times and the plates were developed and measured at OD450. ELISAs with truncated proteins spanning UspA150-770 and UspA230-539 were performed with fixed doses of fibronectin at 80 μg/ml and 120 μg/ml, respectively.
Cell Line Adherence Inhibition Assay
Chang conjunctival cells (ATCC CCL 20.2) were cultured in RPMI 1640 medium (Gibco BRL, Life Technologies, Paisley, Scotland) supplemented with 10% fetal calf serum, 2 mM L-glutamine, and 12 μg of gentamicin/ml. On the day before adherence inhibition experiments, cells were harvested, washed twice in gentamicin-free RPMI 1640, and added to 96 well tissue culture plates (Nunc) at a final concentration of 104 cells/well in 200 μl of gentamicin-free culture medium. Thereafter, cells were incubated overnight at 37° C. in a humidified atmosphere of 5% CO2 and 95% air. On the day of experiments, inhibition of M. catarrhalis adhesion was carried out by pre-incubating increasing concentration of recombinant UspA1/A2 truncated proteins containing the fibronectin binding domains (UspA1299-452 and UspA2165-318) or rabbit anti-human fibronectin pAb (diluted 1:50) for 1 h. Nonfibronectin binding recombinant proteins (UspA1433-580 and UspA230-177) were used as controls. Chang epithelial cells are known to express ICAM1. [18] Hence an anti-ICAM1 antibody was used to differentiate if the inhibitory effect of the anti-fibronectin antibody was secondary to steric hindrance. Subsequently, M. catarrhalis RH4 (106) in PBS-gelatin was inoculated onto the confluent monolayers. In all experiments, tissue culture plates were centrifuged at 3,000×g for 5 min and incubated at 37° C. in 5% CO2. After 30 min, infected monolayers were rinsed several times with PBS-gelatin to remove non-adherent bacteria and were then treated with trypsin-EDTA (0.05% trypsin and 0.5 mM EDTA) to release the Chang cells from the plastic support. Thereafter, the resulting cell/bacterium suspension was seeded in dilution onto agar plates containing BHI and incubated overnight at 37° C. in 5% CO2.
Determination of Fibronectin Expression in Chang Conjunctival Epithelial Cells
Chang conjunctival epithelial cells were harvested by scraping followed by re-suspension in PBS-gelatin. Cells (1×106/ml) were labeled with rabbit anti-human fibronectin pAb followed by washing and incubation with a FITC-conjugated anti-rabbit pAb. After three additional washes, the cells were analyzed by flow cytometry as outlined above.
Interaction Between M. catarrhalis and Laminin Bacterial Strains and Culture Conditions
The clinical M. catarrhalis strains BBH18 and RH4 and their corresponding mutants were previously described. [58] Both strains have a relatively higher expression of UspA2 compared to UspA1. [58] The mutants expressed equal amount of M. catarrhalis immunoglobulin D-binding protein (MID) when compared to wild type strains. Bacteria were routinely cultured in brain heart infusion (BHI) broth or on BHI agar plates at 37° C. The UspA1-deficient, UspA2-deficient and double mutants were cultured in BHI supplemented with antibiotics as described. [58]
Recombinant Protein Construction and Expression Recombinant
UspA150-770 and UspA230-539, which are devoid of their hydrophobic C-termini, were manufactured. [58] In addition, recombinant proteins corresponding to multiple regions spanning UspA150-770 and UspA230-539 were used. [78]
Antibodies
Rabbit anti-UspA1/A2 and anti-MID polyclonal antibodies (pAb) were used. [22, 58] Rabbit anti-laminin pAb was from Sigma (St Louis, Mo., USA). Swine horseradish peroxidase (HRP)-conjugated anti-rabbit pAb was from Dakopatts (Glostrup, Denmark).
Binding of M. catarrhalis to Immobilized Laminin
Microtiter plates (Nunc-Immuno Module; Roskilde, Denmark) were coated with Engelbreth-Holm-Swarm mouse sarcoma laminin (Sigma, Saint Louis, USA) or bovine serum albumin (BSA) (30 μg/ml) in Tris-HCL, pH 9.0 at 4° C. overnight. The plates were washed with phosphate buffered saline and 0.05% Tween 20, pH 7.2 (PBS-Tween) and subsequently blocked with 2% BSA in PBS+0.1% Tween 20, pH 7.2. M. catarrhalis RH4 and BBH18 (108) in 100 μl were then added followed by incubation for 1 h. Unbound bacteria were removed by washing 3 times with PBS-Tween. Residual bound bacteria were detected by means of an anti-MID pAb, followed by detection with HRP-conjugated anti-rabbit pAb. The plates were developed and measured at OD450 according to a standard protocol.
Enzyme-Linked Immunosorbent Assay (ELISA)
Microtiter plates (Nunc-Immuno Module) were coated with 40 nM of purified recombinant UspA150-770 and UspA230-539 proteins in 75 mM sodium carbonate, pH 9.6 at 4° C. Plates were washed four times with washing buffer (50 mM Tris-HCl, 0.15 M NaCl, and 0.1% Tween 20, pH 7.5) and blocked at RT with washing buffer containing 3% fish gelatin. After additional washings, the wells were incubated for 1 h at RT with laminin at different dilutions as indicated in 1.5% fish gelatin (in wash buffer). Thereafter, the plates were washed and incubated with rabbit anti-laminin pAb. After additional washings, HRP-conjugated anti-rabbit pAb was added and incubated at RT. Both the anti-laminin and HRP-conjugated anti-rabbit pAb were diluted 1:1,000 in washing buffer containing 1.5% fish gelatin. The wells were washed and the plates were developed and measured at OD450. Uncoated wells incubated with identical dilutions of laminin were used as background controls. ELISAs with truncated proteins spanning UspA150-770 and UspA230-539 were performed with fixed doses of laminin (20 μg/ml).
Interaction Between M. catarrhalis and C3 and C3met Bacterial Strains and Culture Conditions
The clinical M. catarrhalis isolates and related subspecies have recently been described in detail. [21, 53] Type strains were from the Culture Collection, University of Gothenburg (CCUG; Department of Clinical Bacteriology, Sahlgrenska Hospital, Gothenburg, Sweden), or the American Type Culture Collection (ATCC; Manassas, Va.); Neisseria gonorrheae CCUG 15821, Streptococcus pyogenes CCUG 25570 and 25571, Streptococcus agalactiae CCUG 4208, Streptococcus pneumoniae ATCC 49619, Legionella pneumophila ATCC 33152, Pseudomonas aeruginosa ATCC 10145, Staphylococcus aureus ATCC 29213, and finally Staphylococcus aureus ATCC 25923. The remaining strains in Table 9 were clinical isolates from Medical Microbiology, Department of Laboratory Medicine, Malmö University Hospital, Lund University, Sweden.







TABLE 9







M. catarrhalis is a unique C3/C3met binding


bacterium. Related moraxella subspecies and other common


human pathogens do not bind C3/C3met (mfi <2.0). After


incubation with EDTA-treated NHS or C3met, bacteria were


analysed by flow cytometry using a rabbit anti-C3d pAb and a


FITC-conjugated goat anti-rabbit pAb.









Species
NHS-EDTA (mfi)
C3met (mfi)












Moraxella catarrhalis RH4
8.7
22.1


M. osloensis
<2.0
<2.0


M. bovis
<2.0
<2.0


M. caniculi
<2.0
<2.0


M. nonliquefacie
<2.0
<2.0


N. pharyngis
<2.0
<2.0


N. sicca
<2.0
<2.0


N. flava
<2.0
<2.0


N. subflava
<2.0
<2.0


Oligella ureolytica (n = 2)
<2.0
<2.0


Haemophilus influenzae (n = 7)
<2.0
<2.0


Streptococcus pneumoniae (n = 11)
<2.0
<2.0


Legionella pneumophila (n = 2)
<2.0
<2.0


Pseudomonas aeruginosa (n = 2)
<2.0
<2.0


Listeria monocytogenes
<2.0
<2.0


Yersinia entercolitica
<2.0
<2.0


Staphylococcus aureus (n = 3)
<2.0
<2.0


Streptococcus pyogenes (n = 2)
<2.0
<2.0


Streptococcus agalactia
<2.0
<2.0


Enterococcus faecalis
<2.0
<2.0


Helicobacter pylori
<2.0
<2.0


Escherichia coli (n = 2)
<2.0
<2.0


M. ovis
<2.0
<2.0


M. caviae
<2.0
<2.0


Neisseria gonorrheae
<2.0
<2.0


N. meningtidis
<2.0
<2.0


N. mucosa
<2.0
<2.0









The different non-moraxella species were grown on appropriate standard culture media. M. catarrhalis strains were routinely cultured in brain heart infusion (BHI) liquid broth or on BHI agar plates at 37° C. M. catarrhalis BBH18 and RH4 mutants were manufactured as previously described. [22, 23, 58] The MID-deficient mutants were grown in BHI containing 50 μg/ml kanamycin. The UspA1-deficient mutants were cultured in BHI supplemented with 1.5 μg/ml chloramphenicol (Sigma, St. Louis, Mo.), and UspA2-deficient mutants were incubated with 7 μg/ml zeocin (Invitrogen, Carlsbad, Calif.). Both chloramphenicol and zeocin were used for growth of the UspA1/A2 double mutants.
Antibodies
Rabbits were immunized intramuscularly with 200 μg recombinant full-length UspA1 emulsified in complete Freunds adjuvant (Difco, Becton Dickinson, Heidelberg, Germany), and boosted on days 18 and 36 with the same dose of protein in incomplete Freunds adjuvant. [22] Blood was drawn 3 weeks later. To increase the specificity, the anti-UspA1 antiserum was affinity-purified with Sepharose-conjugated recombinant UspA150-770. [58] The antiserum bound equally to UspA1 and UspA2 and was thus designated anti-UspA1/A2 pAb. The rabbit anti-human C3d pAb and the FITC-conjugated swine anti-rabbit pAb were purchased from Dakopatts (Glostrup, Denmark), and the goat anti-human C3 were from Advanced Research Technologies (San Diego, Calif.). The horseradish peroxidase (HRP)-conjugated donkey anti-goat pAb was obtained from Serotec (Oxford, UK).
Proteins and Iodine Labelling
The manufacture of recombinant UspA150-770 and UspA230-539, which are devoid of their hydrophobic C-termini, has recently been described. [23] The truncated UspA1 and UspA2 proteins were manufactured as described in detail by Tan et al. [78] C3b was purchased from Advanced Research Technologies. C3(H2O) was obtained by freezing and thawing of purified C3. The C3b-like molecule (C3met) was made by incubation of purified C3 with 100 mM methylamine (pH 8.0) for 2 h at 37° C., and subsequent dialysis against 100 mM Tris-HCl (pH 7.5), 150 mM NaCl. For binding studies, C3met was labelled with 0.05 mol 125I (Amersham, Buckinghamshire, England) per mol protein, using the Chloramine T method. [25]
Flow Cytometry Analysis
Binding of C3 to M. catarrhalis and other species was analyzed by flow cytometry. Bacteria were grown on solid medium overnight and washed twice in PBS containing 2% BSA (Sigma) (PBS-BSA). Thereafter, bacteria (108 colony forming units; cfu) were incubated with C3met, C3b, C3(H2O), or 10% NHS with or without 10 mM EDTA or 4 mM MgCl2 and 10 mM EGTA (Mg-EGTA) in PBS-BSA for 30 min at 37° C. After washings, the bacteria were incubated with anti-human C3d pAb for 30 min on ice, followed by washings and incubation for another 30 min on ice with FITC-conjugated goat anti-rabbit pAb. After three additional washes, bacteria were analyzed by flow cytometry (EPICS, XL-MCL, Coulter, Hialeah, Fla.). All incubations were kept in a final volume of 100 μl PBS-BSA and the washings were done with the same buffer. The anti-human C3d pAb and FITC-conjugated anti-rabbit pAb were added separately as a negative control for each strain analyzed. In the inhibition studies, serum was preincubated with 100 nM of the recombinant UspA150-770 and UspA230-539 proteins for 30 min at 37° C. To analyze the characteristics of the M. catarrhalis and C3 interaction, increasing concentrations of NaCl (0-1.0 M) was added to bacteria and C3met. To analyze UspA1/A2 expression, bacteria (108 cfu) were incubated with the anti-UspA1/A2 pAb and washed as described above. A FITC-conjugated goat anti-rabbit pAb diluted according to the manufacturers instructions was used for detection. To assure that EDTA did not disrupt the outer membrane proteins UspA1 and UspA2, M. catarrhalis was incubated with or without EDTA followed by detection of UspA1/A2 expression. EDTA, at the concentrations used in the NHS-EDTA experiments, did not change the density of UspA1/A2.
Serum and Serum Bactericidal Assay
Normal human serum (NHS) was obtained from five healthy volunteers. The blood was allowed to clot for 30 min at room temperature and thereafter incubated on ice for 60 min. After centrifugation, sera were pooled, aliquoted and stored at −70° C. To inactivate both the classical and alternative pathways, 10 mM EDTA was added. In contrast, Mg-EGTA was included to inactivate the classical pathway. Human serum deficient in the C4BP was prepared by passing fresh serum through a HiTrap column (Amersham Biosciences) coupled with mAb 104, a mouse mAb directed against CCP1 of the □-chain of C4BP. [41] The flow through was collected and the depleted serum was stored in aliquots at −70° C. Serum depleted of C1q was obtained via the first step of C1q purification [79] using Biorex 70 ion exchange chromatography (Bio-Rad, Hercules, Calif.). The resulting sera displayed normal haemolytic activity. The factor D and properdin deficient serum was kindly provided by Dr. Anders Sjöholm (Department of Medical Microbiology, Lund University, Lund, Sweden). M. catarrhalis strains were diluted in 2.5 mM Veronal buffer, pH 7.3 containing 0.1% (wt/vol) gelatin, 1 mM MgCl2, 0.15 mM CaCl2, and 2.5% dextrose (DGVB++). Bacteria (103 cfu) were incubated together with 10% NHS and EDTA or Mg-EGTA in a final volume of 100 μl. The bacteria/NHS was incubated at 37° C. and at various time points, 10 μl aliquots were removed and spread onto BHI agar plates. In inhibition studies, 10% serum was incubated with 100 nM of the recombinant UspA150-770 and UspA230-539 proteins for 30 min at 37° C. before bacteria were added.
Dot Blot Assays
Purified recombinant UspA150-770 and UspA230-539 diluted in three-fold steps (1.9-150 nM) in 100 μl of 0.1 M Tris-HCl, pH 9.0 were applied to nitrocellulose membranes (Schleicher & Schull, Dassel, Germany) using a dot blot device. After saturation, the membranes were incubated for 2 h with PBS-Tween containing 5% milk powder at room temperature and washed four times with PBS-Tween. Thereafter, 5 kcpm [125I]-labelled C3met in PBS-Tween with 2% milk powder was added overnight at 4° C. The bound protein was visualized with a Personal FX (Bio-Rad) using intensifying screens.
Surface Plasmon Resonance (Biacore)
The interaction between UspA150-770 or UspA230-539 and C3 was further analysed using surface plasmon resonance (Biacore 2000; Biacore, Uppsala, Sweden) as recently described for the UspA1/2-C4BP interaction. [58] The KD (the equilibrium dissociation constant) was calculated from a binding curve showing response at equilibrium plotted against the concentration using steady state affinity model supplied by Biaevaluation software (Biacore).
Enzyme-Linked Immunosorbent Assay (ELISA)
Microtiter plates (Nunc-Immuno Module; Roskilde, Denmark) were coated with triplets of purified recombinant UspA150-770, UspA230-539, or the truncated UspA1 and UspA2 fragments (40 nM in 75 mM sodium carbonate, pH 9.6) at 4° C. overnight. Plates were washed four times with washing buffer (PBS with 0.1% Tween 20, pH 7.2) and blocked for 2 hrs at room temperature with washing buffer supplied with 1.5% ovalbumin (blocking buffer). After washings, the wells were incubated overnight at 4° C. with 0.25 □g C3met in blocking buffer. Thereafter, the plates were washed and incubated with goat anti-human C3 in blocking buffer for 1 h at RT. After additional washings, HRP-conjugated donkey anti-goat pAbs was added for another 1 h at RT. The wells were washed four times and the plates were developed and measured at OD450.
Haemolytic Assay
Rabbit erythrocytes were washed three times with ice-cold 2.5 mM Veronal buffer, pH 7.3 containing 0.1% (wt/vol) gelatin, 7 mM MgCl2, 10 mM EGTA, and 2.5% dextrose (Mg++EGTA), and resuspended at a concentration of 0.5×109 cells/ml. Erythrocytes were incubated with various concentrations (0 to 4%) of serum diluted in Mg++EGTA. After 1 h at 37° C., erythrocytes were centrifuged and the amount of lysed erythrocytes was determined by spectrophotometric measurement of released hemoglobin at 405 nm. For inhibition with UspA1 and UspA2, 10% serum was preincubated with 100 nM of recombinant UspA150-770 and/or UspA230-539 proteins for 30 min at 37° C., and thereafter added to the erythrocytes at 0 to 4%.
Isolation of Polymorphonuclear Leukocytes and Phagocytosis
Human polymorphonuclear leukocytes (PMN) were isolated from fresh blood of healthy volunteers using macrodex (Pharmalink AB, Upplands Vasby, Sweden). The PMN were centrifuged for 10 min at 300 g, washed in PBS and resuspended in RPMI 1640 medium (Life Technologies, Paisley, Scotland). The bacterial suspension (0.5×108) was opsonized with 3% of either NHS or NHS-EDTA, or 20 □g of purified C3met for 15 min at 37° C. After washes, bacteria were mixed with PMN (1×107 cells/ml) at a bacteria/PMN ratio of 10:1 followed by incubation at 37° C. with end-over-end rotation. Surviving bacteria after 0, 30, 60, and 120 min of incubation was determined by viable counts. The number of engulfed NHS-treated bacteria was compared with bacteria phagocytosed in the absence of NHS. S. aureus opsonized with NHS was used as positive control.
Examples And Results
Interaction Between M. catarrhalis and Fibronectin M. catarrhalis Devoid of UspA1 and A2 does not Bind Soluble or Immobilized Fibronectin.
We selected a random series of M. catarrhalis clinical strains (n=13) (table 7) and tested them for fibronectin binding in relation to their UspA1/A2 expression by flow cytometry analysis. High UspA1/A2 expression as determined by high mean fluorescence intensity (MFI) was correlated to UspA1/A2 expression (Pearson correlation coefficient 0.77, P<0.05) (FIG. 1A). However, to discriminate between UspA1 and A2 expression was not possible with our anti-UspA1/A2 pAb. Moreover, the presence of UspA2H protein contributing to the binding was unlikely as the uspA2H gene was not found in the strains used in this study (data not shown).
Two M. catarrhalis isolates (BBH18 and RH4) and their specific mutants lacking UspA1, UspA2 or both proteins were also analyzed by flow cytometry. M. catarrhalis BBH18 strongly bound fibronectin with a mean fluorescence intensity (MFI) of 96.1 (FIG. 1F). In contrast, BBH18ΔuspA1 showed a decreased fibronectin binding with an MFI of 68.6 (FIG. 1G). Fibronectin binding to BBH18ΔuspA2 and the double mutant BBH18uspA1/A2 revealed an MFI of only 10.7 and 11.5, respectively (FIG. 1H, 1I). Similar results were obtained with UspA1/A2 mutants of the clinical strain M. catarrhalis RH4. Taken together, these results suggest that UspA1 and A2 bound fibronectin and that the ability of the bacteria to bind fibronectin strongly depended on UspA1/A2 expression.
To further analyze the interaction between fibronectin and M. catarrhalis, 125I-labeled fibronectin was incubated with two clinical M. catarrhalis isolates (BBH18 and RH4) and their respective mutants. The wild type M. catarrhalis RH4 strongly bound 125I-fibronectin while the corresponding uspA1 mutant showed 80% binding of the wild type. In contrast, the uspA2 and double mutant bound 125I-fibronectin at 14% and 12%, respectively, which was just above the background levels (5.0 to 10%) (FIG. 2). Similar results were obtained with M. catarrhalis BBH18 and the corresponding UspA1/A2 mutants. Thus, our results suggest that both UspA1 and A2 are required for the maximal binding of soluble fibronectin by M. catarrhalis. 
To investigate the bacterial attachment to immobilized fibronectin, M. catarrhalis RH4 and its corresponding uspA1/A2 mutants were applied onto fibronectin coated glass slides. After 2 h of incubation, slides were washed, and subsequently Gram stained. M. catarrhalis wild type and the uspA1 mutant were found to strongly adhere to the fibronectin coated glass slides (FIGS. 3A and 3B). In contrast, M. catarrhalis uspA2 and uspA1/A2 double mutants weakly adhered to the fibronectin coated glass slide with only a few bacteria left after washing (FIGS. 3C and 3D, respectively). Experiments with another M. catarrhalis clinical isolate (BBH18) and its derived mutants showed a similar pattern indicating that UspA2 was of major importance for M. catarrhalis binding to immobilized fibronectin.
The Fibronectin Binding Domains Include Amino Acid Residues Located Between 299 and 452 of UspA1 and Between 165 and 318 of UspA2
To further analyze the interactions of UspA1 and A2 with fibronectin, truncated UspA150-770 and UspA230-539 were recombinantly produced in E. coli, coated on microtiter plates and incubated with increasing concentrations of fibronectin. Bound fibronectin was detected with an anti-human fibronectin pAb followed by incubation with a horseradish peroxidase conjugated anti-rabbit pAb. Both recombinant UspA150-770 and UspA230-539 bound soluble fibronectin and the interactions were dose-dependent (FIG. 4).
To define the fibronectin-binding domain of UspA1, recombinant proteins spanning the entire molecule of UspA150-770 were manufactured. Fibronectin was incubated with the immobilized UspA1 proteins fragments and the interactions were quantified by ELISA. UspA150-491 bound fibronectin almost as efficiently as UspA150-770 suggesting that the binding domain was within this part of the protein. Among the other truncated fragments, UspA1299-452 efficiently bound fibronectin (FIG. 5A). In parallel, the interactions between fibronectin and several recombinant UspA2 fragments including amino acids UspA230-539 were analyzed. The two fragments UspA2101-318 and UspA2165-318 strongly bound fibronectin (FIG. 5B). Our findings provide significant evidence that the binding domains include residues found within UspA1299-452 and UspA2165-318. A sequence comparison between these two binding fragments revealed that the 31 amino acid residues “DQKADIDNNINNIYELAQQQDQHSSDIKTLK” (SEQ ID NO: 1) were identical for UspA1 and A2 (FIG. 6). Moreover, this repeat sequence was also found in the uspA1 and A2 gene of M. catarrhalis BBH18 and RH4 (data not shown).
UspA150-491 and UspA1299-452 Fragments Competitively Inhibit M. catarrhalis Fibronectin Binding
To further validate our findings on the UspA1/A2 fibronectin binding domains, recombinant truncated UspA1 proteins were tested for their capacity to block fibronectin binding to M. catarrhalis. Fibronectin (2 μg) was pre-incubated with 0.25 μmoles of recombinant UspA1 fragments and subsequently incubated with M. catarrhalis. Finally, M. catarrhalis UspA-dependent fibronectin binding was measured by flow cytometry. Pre-incubation with UspA150-491 and UspA1299-432 resulted in decreased fibronectin binding with a 95% reduction for UspA130-491 and a 63% reduction for UspA1299-452 (FIG. 7). When fibronectin was pre-incubated with the truncated UspA2101-318, an inhibition of 50% was obtained.
Thus, the fibronectin binding domains of UspA1 and A2 block the interactions between fibronectin and M. catarrhalis. 
UspA1299-452 and UspA2165-318 Inhibit M. catarrhalis Adherence to Chang Epithelial Cells
Epithelial cells are known to express fibronectin and many bacteria attach to epithelial cells via cell-associated fibronectin. [46, 54, 69, 77] Previous studies have shown that M. catarrhalis adhere to epithelial cells. [43, 49] We analyzed Chan conjunctival cells, which have frequently been used in adhesion experiments with respiratory pathogens. Chang cells strongly expressed fibronectin as revealed by flow cytometry analysis (FIG. 8A).
To analyze whether the UspA-dependent fibronectin binding was important for bacterial adhesion, Chang epithelial cells were pre-incubated with anti-human fibronectin pAb, or the recombinant proteins UspA1299-452 and UspA2165-318. Thereafter, M. catarrhalis RH4 was added and bacterial adhesion analyzed. The relative adherence (measured by the number of colony forming units) after pre-incubation with 0.4 μmoles per 200 μl of UspA1299-452, UspA2165-318, or an anti-human fibronectin pAb were 36%, 35% and 32%, respectively. Higher concentrations of recombinant peptides did not result in further inhibition. In contrast, the non-fibronectin binding fragments UspA1433-580 and UspA230-177 did not inhibit the interactions between M. catarrhalis and the Chang epithelial cells (FIG. 8B). Thus, fibronectin on Chang epithelial cells may function as a receptor for M. catarrhalis and the amino acid residues 299-452 of UspA1 and 165-318 of UspA2 contain the ligand responsible for the interactions.
Interaction Between M. catarrhalis and Laminin M. catarrhalis Binds Laminin Through UspA1 and A2
Two clinical M. catarrhalis isolates (BBH18 and RH4) and their specific mutants lacking UspA1, UspA2 or both proteins were analyzed by a whole-cell ELISA. M. catarrhalis RH4 strongly bound to immobilized laminin. (FIG. 9A). In contrast, M. catarrhalis RH4 uspA1 mutant (RH4ΔuspA1) showed a laminin binding of 89.9% of the wild type. M. catarrhalis RH4 uspA2 mutant (RH4ΔuspA2) and the double mutant RH4ΔuspA1/A2 15.2% and 18.1% binding capacity of the wild type, respectively. This was not significantly different from the residual adhesion to BSA coated plates. Similar results were obtained with UspA1/A2 mutants originating from the clinical strain M. catarrhalis BBH18. In these two strains (BBH18 and RH4), UspA2 is the predominant protein expressed as compared to UspA1, explaining the minimal difference in binding between the wild type and RH4ΔuspA1. Taken together, these results show that UspA1 and A2 bound laminin.
To further analyze the binding between UspA1/A2 and laminin, truncated UspA150-770 and UspA230-539 were produced in E. coli. Recombinant proteins were coated on microtiter plates and incubated with increasing concentrations of laminin. Bound laminin was detected with a rabbit anti-laminin pAb followed by incubation with an HRP-conjugated anti-rabbit pAb. Both recombinant UspA150-770 and UspA230-539 strongly bound soluble laminin and the binding was dose-dependent and saturable (FIG. 9B).
To define the laminin binding domains, recombinant UspA1 and A2 spanning the entire molecules were manufactured. Laminin was incubated with immobilized truncated UspA1 and A2 fragments and followed by quantification by ELISA. UspA150-491 bound to laminin almost as efficiently as UspA150-770 suggesting that the binding domain was within this part of the protein. However, among the other truncated fragments spanning this region, no other fragment appeared to bind laminin. The N-terminal part, UspA230-351, was able to retain 44.7% binding capacity as compared to the full length protein. The shorter protein UspA230-177 showed a 43.7% binding capacity. (FIG. 10B). These results show that the binding domains include residues found within the N-terminals of both UspA1 and UspA2.
Interaction Between M. catarrhalis and C3 and C3met M. catarrhalis Outer Membrane Proteins UspA1 and UspA2 Inhibit Both the Classical and the Alternative Pathway of the Complement Cascade
UspA2 surface expression is crucial for M. catarrhalis survival in normal human serum (NHS) [1, 58], i.e., moraxella UspA2 deficient mutants are rapidly killed when exposed to NHS. We have recently shown that both UspA1 and A2 bind C4BP and thus might inhibit the classical pathway of complement activation [58]. To further shed light on M. catarrhalis interactions with the complement system, survival of UspA1/A2 double mutants was studied in serum treated with either EGTA with addition of MgCl2 (Mg-EGTA) or EDTA. Mg-EGTA inhibits the classical and lectin pathways and thus allows separate analysis of the alternative pathway. In contrast, EDTA inhibits all complement pathways by absorbing divalent cations (Mg2+ and Ca2+). The M. catarrhalis RH4 wild type survived after 30 min of incubation, whereas RH4□uspA1/A2 double mutant was killed by intact NHS after 10 min (FIG. 12). When the classical pathway was inhibited (NHS+Mg-EGTA), the RH4□uspA1/A2 mutant survived for a significantly longer period of time as compared to NHS without any chelators, but not as long as the wild type bacterium. Furthermore, when both the classical and alternative pathways were blocked with EDTA, M. catarrhalis RH4□uspA1/A2 survived. A similar pattern was obtained with the M. catarrhalis BBH18 isolate and the corresponding BBH18 □uspA1/A2 mutants (not shown). In parallel, experiments with C1q and factor D/properdin deficient sera demonstrated that both the classical and the alternative pathways were inhibited by M. catarrhalis (not shown). Thus, M. catarrhalis, a pathogen that frequently colonizes the human respiratory tract, does not only counteract the classical pathway but also the alternative pathway of the complement system by the outer membrane proteins UspA1 and A2.
M. catarrhalis Absorbs C3 from EDTA-Inactivated Serum
C3b covalently binds to the surface of a microbe and hence induces the alternative pathway (FIG. 11B). To analyze whether M. catarrhalis can interact with C3, our RH4 wild type strain was incubated with NHS or NHS treated with EDTA. Binding or deposition (via covalent link) of C3/C3b at the bacterial surface of M. catarrhalis RH4 was detected by flow cytometry analysis with a polyclonal antibody (pAb) directed against C3d recognizing both C3 and C3b. Incubation of bacteria with NHS containing intact complement led to deposition of C3 (FIG. 13). Interestingly, when the complement cascade was inactivated in the presence of EDTA, the M. catarrhalis RH4 still bound C3 (FIG. 13A). Streptococcus pneumoniae that was included for comparison did not absorb C3 from the EDTA-treated serum (FIG. 13B). In contrast to pneumococci, M. catarrhalis thus bound C3 irrespectively of complement activation. The internal thioester of C3 is spontaneously hydrolysed in fluid phase to C3(H2O). Thus, intact C3 or C3 (H2O) was the most likely forms of C3 interacting with M. catarrhalis. Since M. catarrhalis also binds C4BP [58], we wanted to exclude that C4BP was involved in the C3 binding and for that purpose we used C4BP depleted serum. M. catarrhalis absorbed C3 from the C4BP depleted serum to the same extent as to NHS (not shown).
Binding of C3met to M. catarrhalis is Dose-Dependent and Non-Covalent
Our experiments implied that C3 bound to the surface of M. catarrhalis irrespectively of complement activation. Therefore, we analyzed whether converted C3, which is non-functional, could bind to the bacteria. Native C3 was purified from human serum and treated with methylamine, which converts C3 to a C3met molecule equivalent to C3b without the capacity to covalently bind to microbes (FIG. 11C). Flow cytometry analysis revealed that the M. catarrhalis RH4 wild type strain efficiently bound C3met in a dose-dependent and saturable manner (FIGS. 14A and B). This interaction was not mediated by the C3a part of the C3 molecule since C3b and C3(H2O) also bound M. catarrhalis (not shown). The binding between M. catarrhalis RH4 and C3met was based to a large extent on ionic interactions as increasing concentrations of NaCl inhibited the interaction (FIG. 14C). Similar results were obtained with the M. catarrhalis BBH18 wild type strain (not shown).
To determine whether the binding of C3 is a general feature of all M. catarrhalis strains, we selected a random series of clinical isolates (n=13) and analyzed their capacity to bind C3met. All M. catarrhalis strains bound C3met as revealed by a flow cytometry analysis with an anti-C3d pAb. The mfi values varied from 4 to 39. However, S. pneumoniae and E. coli that were included for comparison did not bind C3met.
M. catarrhalis is a Unique C3 and C3met Binding Bacterium
To extend our analysis of bacterial C3 absorption from NHS, related moraxella subspecies (n=13) as well as common human pathogens (n=13) were incubated in the presence of NHS-EDTA. Interestingly, among all the bacterial species tested, M. catarrhalis was the only bacterium binding C3 in complement-inactivated serum (Table 9). All related moraxella strains as well as the other human pathogens were also analyzed for binding of C3met. In parallel with the C3 binding, M. catarrhalis was the only species that bound C3met. Taken together, M. catarrhalis has a unique feature to strongly bind C3 and C3met in a non-covalent manner.
M. catarrhalis Binds C3met Via the Outer Membrane Proteins UspA1 and UspA2
To determine the M. catarrhalis protein responsible for the C3 binding, we tested a series of bacterial mutants devoid of the outer membrane proteins MID, UspA1 and/or UspA2 [22, 58]. Interestingly, the binding of C3met was significantly correlated with Usp expression (FIG. 15). M. catarrhalis RH4Δmid bound C3met to the same degree as the wild type counterpart (FIG. 15A-B). The RH4ΔuspA1 mutant showed only a slightly decreased binding, whereas the RH4ΔuspA2 was a weaker binder as compared to the wild type counterpart (FIG. 15C-D). In parallel, C3met binding to the double RH4ΔuspA1/A2 mutant was completely abolished (FIG. 15E). Furthermore, when the same experiments were performed using NHS-EDTA, the same pattern was seen (FIG. 15F-J). When normal human serum was used, all mutants showed similar amount of C3 on their surface since it was a mixture of covalent deposition and binding of C3 (FIG. 15K-O). Similar results were obtained with the M. catarrhalisBBH18 isolate and the corresponding BBH18 mutants.
To further analyze the interaction between C3 and UspA1/A2, UspA150-770 and UspA230-539 were produced in E. coli and purified. The recombinant proteins were dot blotted onto a nitrocellulose membrane followed by incubation with iodine-labelled C3met. Recombinant MID962-1200, which is derived from the M. catarrhalis outer membrane protein MID [59], was included as a negative control. A weak binding to UspA150-770 was detected, whereas [125I]-C3met strongly bound to UspA230-539 (FIG. 16A). These findings were further strengthened using surface plasmon resonance (i.e., Biacore). UspA150-770 and UspA230-539 were immobilized on the surface of a CM5 chip using amino coupling and C3met was injected until saturation was reached. The KD for the interaction between C3met and UspA230-539 or UspA150-770 was 3 and 14 μM, respectively. In conclusion, we found that UspA2 was the major C3met-binding protein of M. catarrhalis, whereas UspA1 contributed to the binding to a lower degree.
A C3 Binding Domain is Located Between Amino Acid Residues 200 and 458 of UspA2.
To define the C3 binding domain of UspA2, recombinant proteins spanning the entire UspA230-539 molecule were manufactured. C3met was incubated with the immobilized full length UspA150-770, UspA230-539 and a series of truncated UspA2 proteins. Thereafter, the interactions were quantified by ELISA. In agreement with the dot blot experiments (FIG. 16A), UspA150-770 bound C3met to a much lower extent compared to UspA230-539 in the ELISA (FIG. 16B). Among the truncated protein fragments, UspA2165-318, UspA2200-539 and UspA2302-458 efficiently bound C3met, suggesting that a binding domain was within the amino acid residues 200 and 458.
Recombinant UspA1/A2 Neutralizes C3 Activity
In order to in detail examine the role of UspA1/A2-dependent inhibition of the alternative pathway, a series of flow cytometry experiments was performed with bacteria incubated with 10% NHS or serum that had been preincubated with 100 nM recombinant UspA150-770 and UspA230-539. Interestingly, a significantly decreased C3 deposition/binding at the surface of M. catarrhalis RH4ΔuspA1/A2 was observed when NHS was pretreated with UspA150-770 and UspA230-539 (FIG. 17A). When the classical pathway was shut down with Mg-EGTA, similar results were obtained (FIG. 17B). Thus, the recombinant proteins UspA150-770 and UspA230-539 absorbed C3 from NHS and inhibited deposition/binding of C3.
To determine whether absorption of C3 by recombinant UspA150-770 and UspA230-539 increased bacterial survival, the double mutant M. catarrhalis RH4□uspA1/A2 was incubated with serum supplemented with UspA150-770 and UspA230-539 followed by determination of the number of surviving bacteria. Mg-EGTA was included in the reactions in order to inhibit the classical pathway. Interestingly, addition of recombinant UspA150-770 and UspA230-539 to NHS prevented killing of the UspA1/A2 deficient M. catarrhalis (FIG. 17C). UspA230-539 was most efficient in inhibiting bacterial killing as compared to UspA150-770. When both recombinant proteins were supplemented together, no additional inhibition of the alternative pathway was detected. Ten % NHS correspond to approximately 600 nM C3. To investigate whether more UspA1 molecules could neutralize the C3 activity, UspA150-770 and/or UspA230-539 up to 600 nM was added. However, higher concentrations of the recombinant proteins did not further increase the inhibition (not shown).
We also included an alternative pathway haemolytic assay consisting of rabbit erythrocytes and NHS in order to establish the role of UspA1 and A2 as inhibitors of the alternative pathway. NHS was preincubated with recombinant UspA150-770 UspA230-539, or both proteins together followed by addition to the erythrocytes. After 1 h incubation, the amount of erythrocyte lysis was determined. Interestingly, a significantly decreased haemolysis was observed when NHS was preincubated with UspA150-770 or UspA230-539 as compared to untreated NHS (FIG. 18). In parallel with the increased survival of bacteria in the presence of UspA230-539 or UspA150-770 (FIG. 17C), preincubation with UspA230-539 alone resulted in a more efficient inhibition of the alternative pathway as compared to when NHS was preincubated with UspA150-770. In conclusion, recombinant UspA150-770 or UspA230-539 interfered with the activity of the alternative pathway due to their ability to capture C3.
In addition of being a key molecule in the complement cascade, deposited C3b and iC3b (inactivated C3b) target microbes for removal in the process of opsonophagocytosis. To investigate whether C3 or C3met that was non-covalently bound at the surface of M. catarrhalis could still function as an opsonin, a series of phagocytosis experiments was performed. M. catarrhalis was preincubated with C3met, NHS or NHS treated with EDTA followed by addition of polymorphonuclear leukocytes. Interestingly, M. catarrhalis was not engulfed in the presence of C3met, whereas NHS strongly promoted phagocytosis (data not shown). However, when NHS was pretreated with EDTA, M. catarrhalis was not phagocytosed by polymorphonuclear leukocytes. Thus, C3/C3met was inactive at the M. catarrhalis cell surface and did not function as an opsonin.
Discussion
Interaction Between M. catarrhalis and Fibronectin
UspA1299-452 and UspA2165-318 from the clinical M. catarrhalis strain Bc5 were the shortest fragments that still bound fibronectin. Interestingly, longer fragments encompassing the amino acid sequence found within UspA1299-452 and UspA2165-318 displayed a more efficient binding to fibronectin (FIGS. 5A and B). This may mean that these two regions represent partial binding domains or that the binding site is highly dependent on a specific molecular structure. UspA1299-452 and UspA2165-318 share a sequence of 31 identical amino acid residues including the 23 residues “NNINNIYELAQQQDQHSSDIKTL” (SEQ ID NO: 85) (NNINNIY (SEQ ID NO: 86) sequence). This sequence contains the epitope for the protective monoclonal antibody (mAb) 17C7 for which there is universal reactivity. [2, 50, 30] In a mouse model, passive immunization with mAb 17C7 provided protection and improved pulmonary clearance of M. catarrhalis. [30] It is hence most interesting that UspA1/A2 fibronectin binding domains contain these residues and argues for the importance of this region in the pathogenesis of M. catarrhalis respiratory tract infection. The fibronectin binding M. catarrhalis BBH18 and RH4 used in our experiments also carry the 31 amino acid residues in their UspA1/A2 protein. Most M. catarrhalis have a part of this sequence (i.e., the NNINNIY (SEQ ID NO: 86) sequence). However, strains like the O35E which has the NNINNIY (SEQ ID NO: 86) sequence in their UspA2 gene do not express a fibronectin binding UspA2 protein. [49] A likely explanation would be that the variations in the flanking regions might affect the interaction with fibronectin. Also, the conserved NNINNIY (SEQ ID NO: 86) sequence itself can have minor single amino acid base changes. [28] It is thus likely that fibronectin binding would depend not just on UspA1/A2 expression, but also on the individual makeup of each UspA protein. Interestingly, an almost identical amino acid sequence can be found in the hybrid UspA2H protein with adhesive properties [M. catarrhalis TTA37 and O46E). [43] This give support to our findings that the 31 amino acid sequence is important in adhesion.
In our last set of experiments, we tested whether the adherence of M. catarrhalis to Chang conjunctival cells could be inhibited by the fibronectin binding fragments (UspA1299-452 and UspA2165-318) (FIG. 8B). Preincubation with UspA1299-452, UspA2165-318 or an anti-fibronectin pAb resulted in decreased binding to Chang epithelial cells. These results confirm the importance of these binding domains in the interactions of UspA1/A2 with Chang epithelial cells and further suggest that fibronectin is an important receptor for UspA. In addition, it is known that FnBP facilitate the adherence of bacteria to undifferentiated and injured airways. [54, 69] Fibronectin expression by lung fibroblasts is also increased by cigarette smoke extract. [87] The role of M. catarrhalis UspA1/A2 binding to ECM fibronectin or epithelial cell-associated fibronectin is thus of great importance in patients with COPD and may explain the common occurrence of M. catarrhalis infection in this group of patients. [40]
In conclusion, we have shown that UspA1/A2 of M. catarrhalis BBH18, RH4 and Bc5 are crucial FnBP. Both recombinant UspA1 and A2 derived from Bc5 bind fibronectin with a binding domain sharing identical amino acid residues including the conserved NNINNIY (SEQ ID NO: 86) sequence. Furthermore, an interaction of M. catarrhalis UspA1/A2 with epithelial cells is via cell-associated fibronectin. The definition of these fibronectin binding domains is therefore an important step forward in the development of a vaccine against M. catarrhalis. 
Interaction Between M. catarrhalis and Laminin
M. catarrhalis is a common cause of infectious exacerbations in patients with COPD. The success of this species in patients with COPD is probably related in part to its large repertoire of adhesins. In addition, there are pathological changes such as loss of epithelial integrity with exposure of basement membrane where the laminin layer itself is thickened in smokers. [4] Some pathogens have been shown to be able to bind to laminin and thus may contribute to their ability to adhere to such damaged and denuded mucosal surfaces. These include pathogens known to cause significant disease in the airways such as S. aureus and P. aeruginosa amongst others. [7, 63]
We recently showed that both UspA1 and A2 bind fibronectin. [78] The fibronectin binding domains were located within UspA1299-452 and UspA2165-318. In this study, the N-terminal halves UspA150-491 and UspA230-351 (containing the fibronectin domains) also bound laminin. However, the smallest fragments that bound fibronectin, UspA1299-452 and UspA2165-318 did not bind laminin to any appreciable extent. In fact, fragments smaller than the N-terminal half of UspA1 (UspA150-491) losses all its laminin binding ability whereas with UspA2, only UspA230-170 bound laminin albeit at a lower level then the whole recombinant protein (UspA230-539). These findings suggest that perhaps different parts of the molecules might have different functional roles.
Comparing the smallest laminin binding regions of UspA1 and A2, we find that there is, however, little similarity by way of amino acid homology between UspA230-170 and UspA150-491 (data not shown). This is not surprising as it is a known fact that both proteins have a ‘lollipop’-shaped globular head structure despite having only 22% identity in both N-terminal halves. [2, 32] We postulate that a tertiary structure is likely responsible for the interactions with laminin in the head region in vivo. The localization of the binding domains at the N-terminal end would be logical as this would be most exposed and in contact with the human basement membrane in vivo.
Bacterial factors mediating adherence to tissue and extracellular matrix (ECM) components are grouped together in a single family named “microbial surface components recognizing adhesive matrix molecules” (MSCRAMMS). Since UspA1/A2 bind both fibronectin and laminin, these proteins can be designated MSCRAMMS. Our results suggest that UspA1 and A2 are multifunctional adhesins with different domains interacting with different ligands in the respiratory tract. Similar broad-spectrum binding profiles have been reported for other bacterial proteins such as YadA of Yersinia enterocolitica for which UspA1 and A2 bear a structural relationship. [45, 70] YadA too binds both fibronectin and laminin. [32]
In summary we have shown that UspA1/A2 are crucial to M. catarrhalis interaction with the basement membrane glycoprotein laminin and this will play an important role in the pathogenesis of infections in patients with COPD. [74]
Interaction Between M. catarrhalis and C3 and C3met
Complement resistance is one of the most important bacterial virulence factors. [66] The majority (89%) of M. catarrhalis isolates from patients with lower respiratory tract infections are resistant to complement-mediated killing. [34] M. catarrhalis UspA1 and A2 are crucial for bacterial survival in human serum in vivo [1, 15], and we have shown that these two outer membrane proteins bind to the complement fluid phase regulator of the classical pathway, C4BP. [58] In the present study, we demonstrate that M. catarrhalis can inhibit the alternative pathway by non-covalently binding of C3 (FIGS. 17 and 18). The binding of C3 most likely also inhibits the classical pathway. This could, however, not be analysed in detail since M. catarrhalis also binds C4BP. Interestingly, the M. catarrhalis-dependent C3-binding is unique as several related moraxella subspecies as well as common human pathogenic bacteria do not bind C3 (Table 9). The interactions with C3 and methylamine-treated C3 are mediated mainly by UspA2, whereas UspA1 has a minor role (FIGS. 15 and 16). The C3-binding region of UspA2 was localized between the amino acid residues 200 to 458. This region contains a stretch of 140 amino acid residues that is 93% identical to a region in UspA1. [2] However, despite this sequence similarity, UspA1 binds C3 to a much lower extent. This might be due to a specific difference in conformation between the proteins. The discrepancy in the C3 binding of UspA1 and UspA2 stands in contrast to the UspA1/A2 interaction with C4BP. [58]
M. catarrhalis is equally resistant to both the classical and alternative pathways (FIG. 12B). The bacterium binds C4BP that inhibits the classical pathway [58] and in this paper we demonstrate an interaction with the alternative pathway through binding of C3. To determine which of these mechanisms that is of most importance for the M. catarrhalis serum resistance in various in vivo situations is difficult. For example, the importance of the classical pathway will strongly depend on history of infections with M. catarrhalis and ability to generate complement-activating antibodies. However, every mechanism providing protection from the complement is certainly beneficial for a pathogen. Since C3 is a key molecule in the complement system, the binding of C3 most likely results in regulation of all three activation pathways and may contribute the most to serum resistance.
The importance of the complement system as a primary defence mechanism is mirrored by the fact that microbes have developed various strategies to interfere with and/or neutralize components of the complement system. [42, 35, 88] In addition to M. catarrhalis, S. pyogenes, Bordetella pertussis, E. coli K1, Candida albicans, and N. gonorrhoeae express specific surface molecules that bind C4BP and as a consequence protect the bacteria against the classical complement pathway. [8, 9, 52, 58, 64, 65, 80] In addition to inhibition of the classical pathway, several bacteria (e.g., C. albicans, N. meningitides, S. pyogenes, and S. pneumoniae; for reviews see [68, 89] bind factor H and factor H-like molecule and hence are partially protected against the alternative complement pathway.
UspA1 and A2 absorb C3 from serum and hereby most likely inhibit the complement activation. Similarly, the Pneumococcal Surface Protein A (PspA) appears to inhibit the alternative pathway both in vitro and in vivo. PspA is an important virulence factor for S. pneumoniae. PspA-deficient pneumococcal strains are readily cleared from the blood, whereas the PspA-expressing strains survive. [82] Furthermore, in a murine model of bacteremia, PspA-deficient pneumococci have a significantly reduced virulence compared with pneumococci that express PspA. [11] It has been demonstrated that more C3b is deposited on PspA-negative pneumococci than on PspA-positive. [67, 82] Thus, expression of PspA reduces the complement-mediated clearance and phagocytosis of S. pneumoniae by limiting opsonization by C3b. [12, 67] PspA-deficient pneumococci that are not virulent in normal mice become virulent in C3-deficient and factor B-deficient mice. [82]
To our knowledge, there are only two examples of bacterial proteins that non-covalently bind C3 and thereby interfere with complement function. The first one is the extracellular fibrinogen-binding protein (Efb) of Staphylococcus aureus, which was found to bind C3b. [44] Efb inhibits both the classical and alternative pathways independently of the thioester conformation, i.e., the binding to C3b is non-covalent. The second example is the pneumococcal choline-binding protein (CbpA), which has been shown to bind methylamine-treated C3, suggesting a non-covalent interaction that is not dependent on complement activation. [16] CbpA is a component of the pneumococcal cell wall, but may only bind C3 when the CbpA is secreted. In order to test this hypothesis, which is not firmly established in the literature, we analyzed eleven different pneumococcal isolates for C3 binding (methylamine-treated C3 or NHS-EDTA) by flow cytometry (FIG. 12B and Table 9). No bound C3 could be detected on the surface of S. pneumoniae. When lysates of S. pneumoniae and culture supernatants were analyzed on Western blots using methylamine-treated C3 followed by an anti-human C3 pAb, we confirmed the results by Cheng and collaborators [16] (not shown). In the light of Efb and CbpA, which both are C3-binding proteins secreted by two Gram-positive bacteria, the Gram-negative M. catarrhalis is a unique species with membrane anchored proteins that bind C3 and inhibit the alternative pathway at the surface of the bacterium.
The yeast Candida albicans has been shown to bind C3b, iC3b and C3d. However, C3b is bound at a considerably lower affinity than iC3b and C3d. [29] We found a large difference between C3 binding to M. catarrhalis and C. albicans (not shown); despite that candida bound C3met (56% positive cells), the mean fluorescence intensity (mfi) was only <2.0 as compared to mfi 36.9 for M. catarrhalis. Furthermore, no detectable binding was seen when C. albicans was incubated with EDTA-treated serum. Two C3d-binding proteins have been isolated from C. albicans and the most characterized protein is a 60 kDa mannoprotein that initially was recognized by an antibody directed against human complement receptor 2 (CD21). [13] However, M. catarrhalis UspA1 and A2 were not recognized by a polyclonal antibody directed against CD21 (not shown). In parallel with staphylococci and pneumococci [52, 64], a secreted C3d-binding protein from C. albicans also exists. [72] Finally, a C. albicans iC3b receptor has been isolated and is structurally similar to human CR3 (CD11b). [3] The mechanisms by which these receptors may participate in pathogenesis are not fully known.
The above examples of C3 binding pathogens are notably different from M. catarrhalis in that these species often are blood stream isolates. M. catarrhalis is mucosal pathogen with rare instances of bacteremic infections. Hence, the binding and inactivating C3 most likely occur at the mucosal surface. This is supported by the fact that there is strong ongoing complement activation and consequent inflammation in disease state such as acute otitis media. [57] The complement proteins are believed to be transported to the mucosal surface due to exudation of plasma. [26, 62] In middle-ear effusions (MEEs) from children for example, strongly elevated concentrations of C3 products can also be found. [51] In addition, complement factors in MEEs fluid have been shown to be important in the bactericidal activity against other mucosal agents such as non-typable H. influenzae. [75] M. catarrhalis is a strict human pathogen. It does not cause diseases such as otitis media or pneumonia in animals. A mouse pulmonary clearance model and an otitis media model with chinchilla has been used at several occasions. However, neither otitis media nor pneumonia develops and bacteria are rapidly cleared. [19, 83] It is thus difficult to test the biological significance of bacterial C3 binding in vivo. Since UspA1 and A2 are multifunctional proteins [1, 15, 31, 43, 58, 78], it would be impossible to relate any differences in the clearance of M. catarrhalis to C3 binding. In particular the fact that UspA1 is an important adhesin of M. catarrhalis and binds both CEACAM1 and fibronectin [31, 78] would most likely affect the clearance. Nevertheless, due to the strong complement activation in disease states such as otitis media, moraxella-dependent binding of C3 may represent an important way of combating the mucosal defense.
The fact that M. catarrhalis hampers the human immune system in several ways might explain why M. catarrhalis is such a common inhabitant of the respiratory tract [73]. In conclusion, M. catarrhalis has developed sophisticated ways of combating both the humoral and innate immune systems. The present data show that M. catarrhalis has a unique C3-binding capacity at the bacterial cell surface that cannot be found in other bacterial species.
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## Claims

1. A cDNA encoding a polypeptide consisting of an amino acid sequence selected from SEQ ID NOs 6, 7, and 8.