# Patent

## Title
Monoclonal antibodies that specifically block biological activity of a tumor antigen

## Abstract

This invention relates to novel monoclonal antibodies that specifically bind to the alpha-folate receptor. In some embodiments, the antibodies inhibit a biological activity of folate receptor-α (FR-α). The antibodies are useful in the treatment of certain cancers, particularly cancers that have increased cell surface expression of the alpha-folate receptor (“FR-α”), such as ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer. The invention also relates to cells expressing the monoclonal antibodies, antibody derivatives, such as chimeric and humanized monoclonal antibodies, antibody fragments, and methods of detecting and treating cancer using the antibodies, derivatives, and fragments.

## Background
CROSS-REFERENCE TO RELATED APPLICATION
This application is a continuation of U.S. application Ser. No. 12/500,144, filed Jul. 9, 2009, which is a continuation of U.S. application Ser. No. 11/056,776, filed Feb. 11, 2005, which claims benefit of U.S. Appl. No. 60/544,364, filed Feb. 12, 2004. The content of each of these applications is incorporated herein by reference in its entirety.


FIELD OF THE INVENTION
This invention relates to purified novel monoclonal antibodies that specifically bind to the alpha-folate receptor (“FR-α”) and compositions thereof. In some embodiments, the antibodies of the invention block the biological activity of FR-α. The antibodies and compositions of the invention are useful in the treatment of certain cancers, particularly cancers that have increased cell surface expression of the alpha-folate receptor, such as ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer. The invention also relates to hybridoma cells expressing the monoclonal antibodies, antibody derivatives, such as chimeric and humanized monoclonal antibodies, antibody fragments, mammalian cells expressing the monoclonal antibodies, derivatives and fragments, compositions of purified antibodies of the invention, and methods of detecting and treating cancer using the antibodies, derivatives, fragments, and compositions of the invention.
BACKGROUND OF THE INVENTION
There are three major isoforms of the human membrane folate binding protein, α, β, and γ. The α and β isoforms have about 70% amino acid sequence homology, and differ dramatically in their stereospecificity for some folates. Both isoforms are expressed in fetal and adult tissue, although normal tissue generally expresses low to moderate amounts of FR-β. FR-α, however, is expressed in normal epithelial cells, and is frequently strikingly elevated in a variety of carcinomas (Ross et al. (1994) Cancer 73(9):2432-2443; Rettig et al. (1988) Proc. Natl. Acad. Sci. USA 85:3110-3114; Campbell et al. (1991) Cancer Res. 51:5329-5338; Coney et al. (1991) Cancer Res. 51:6125-6132; Weitman et al. (1992) Cancer Res. 52:3396-3401; Garin-Chesa et al. (1993) Am. J. Pathol. 142:557-567; Holm et al. (1994) APMIS 102:413-419; Franklin et al. (1994) Int. J. Cancer 8 (Suppl.):89-95; Miotti et al. (1987) Int. J. Cancer 39:297-303; and Vegglan et al. (1989) Tumori 75:510-513). FR-α is overexpressed in greater than 90% of ovarian carcinomas (Sudimack and Lee (2000) Adv. Drug Deliv. Rev. 41(2):147-62). FR-α generally attaches to the cell surface membrane via a GPI anchor. GPI anchors contain oligosaccharides and inositol phospholipids.
In 1987, Miotti et al. described three new monoclonal antibodies that recognized antigens on human ovarian carcinoma cells (Miotti et al. (1987) Int. J. Cancer 39(3):297-303). One of these was designated MOv18, which recognizes a 38 kDa protein on the surface of choriocarcinoma cells. MOv18 is a murine, IgG1, kappa antibody and mediates specific cell lysis of the ovarian carcinoma cell line, IGROV1. Alberti et al. ((1990) Biochem. Biophys. Res. Commun. 171(3):1051-1055) showed that the antigen recognized by MOv18 was a GPI-linked protein. This was subsequently identified as the human folate binding protein (Coney et al. (1991) Cancer Res. 51(22):6125-6132). Tomassetti et al. showed that MOv18 recognizes a soluble form and a GPI-anchored form of the folate binding protein in IGROV1 cells (Tomassetti et al. (1993) FEBS Lett. 317(1-2):143-146). Subsequent work combined the variable regions of the mouse MOv18 with human IgG1 (kappa) constant region to create a chimerized MOv18 antibody. The chimerized antibody mediated higher and more specific lysis of IGROV 1 cells at 10-100-fold lower antibody concentrations (Coney et al. (1994) Cancer Res. 54(9):2448-2455). The 38 kDa antigen appears to be the monomeric form of FR-α.
U.S. Pat. No. 5,952,484 describes a humanized antibody that binds to a 38 kDa protein (FR-α). The antibody was named LK26. The original mouse monoclonal antibody was described by Rettig in European Patent Application No. 86104170.5 (published as EP0197435 and issued in the U.S. as U.S. Pat. No. 4,851,332).
Ovarian cancer is a major cause of death due to gynecological malignancy. Although chemotherapy is the recommended treatment and has enjoyed some success, the 5-year survival rate is still less than 40%.
A difficult problem in antibody therapy in cancer is that often the target of the antibody is expressed by normal tissues as well as cancerous tissues. Thus, the antibodies that are used to kill cancer cells also have a deleterious effect on normal cells. Finding unique targets or targets that are preferentially expressed in cancer tissues has proven difficult in many cancers. Identification of preferentially expressed targets and the ability to block the biological activity of such targets may be an effective treatment for cancer. As such, more effective antibody therapies for ovarian and other FR-α-bearing cancers that avoids or minimizes reactivity with normal tissues are needed.
SUMMARY OF THE INVENTION
In some embodiments, the invention provides antibodies that specifically bind to FR-α. The antibodies of the invention preferably block a biological activity of FR-α. In some embodiments, the invention provides antibody-producing cells and compositions of antibodies that specifically bind to FR-α wherein the cells and compositions are substantially free of FR-α binding competitors. In some embodiments, antibody-producing cells that produce antibodies comprising substantially only antibody of the invention are provided. In preferred embodiments, the antibodies of the invention bind FR-α with a binding affinity of at least about 1×10−7 M, at least about 1×10−8 M, at least about 1×10−9 M, and most preferably at least about 1×10−10 M.
It has been discovered that tumors that overexpress FR-α tend to favor the formation of multimeric forms of FR-α, for example tetramers. Without wishing to be bound by any particular theory, it is believed that the formation of the multimeric form of FR-α is driven by a mass effect due to the accumulation of larger amounts of FR-α on the surface of tumor cells. Previously, other researchers only found higher molecular weight species of FR-α in gel filtration assays which represented FR-α inserted into Triton X-100 micelles via their hydrophobic tails (Holm et al. (1997) Biosci. Reports 17(4):415-427). In some embodiments, the invention provides antibodies that specifically bind to the multimeric form of FR-α and not the monomeric form.
In some embodiments, the antibodies of the invention (a) bind to an epitope of FR-α other than the epitope bound by antibody LK26; (b) bind FR-α with greater affinity than antibody LK26; (c) out-compete antibody LK26 for binding to the multimeric form of FR-α and thereby block the biological activity of FR-α; and/or (d) are purified relative to LK26.
In some embodiments, the antibodies of the invention recognize a disulfide-dependent epitope.
Some embodiments of the invention relate to antibodies comprising a heavy chain comprising an amino acid sequence of SEQ ID NO:5. In some embodiments, the heavy chain comprises an amino acid sequence of SEQ ID NO:6.
In some embodiments, the antibodies of the invention comprise a light chain comprising the amino acid sequence of SEQ ID NO:2. In some embodiments of the invention, the antibodies comprise a light chain comprising the amino acid sequence of SEQ ID NO:3.
The invention further provides antibodies comprising a heavy chain comprising an amino acid of SEQ ID NO:5 or SEQ ID NO:6 and a light chain comprising an amino acid sequence of SEQ ID NO:2 or SEQ ID NO:3. The antibodies of the invention preferably comprise a heavy chain comprising an amino acid sequence of SEQ ID NO:5 and a light chain comprising an amino acid sequence of SEQ ID NO:2 and more preferably comprise a heavy chain comprising an amino acid sequence of SEQ ID NO:6 and a light chain comprising an amino acid sequence of SEQ ID NO:3. In some embodiments of the invention, the heavy chain of the antibody is encoded by a nucleic acid comprising the nucleotide sequence of SEQ ID NO:7. In some embodiments of the invention, the light chain of the antibody is encoded by a nucleic acid comprising the nucleotide sequence of SEQ ID NO:8.
The antibodies of the invention may be chimeric antibodies, including, but not limited to human-mouse chimeric antibodies. The antibodies of the invention may also be humanized antibodies. The invention also provides: cells, including hybridoma cells, that express the antibodies of the invention; polynucleotides that encode the antibodies of the invention; vectors comprising the polynucleotides that encode the antibodies of the invention; and expression cells comprising the vectors of the invention.
The invention also provides methods of producing an antibody that specifically binds to FR-α. In some embodiments, the method comprises the step of culturing the antibody-producing cells of the invention. The cells of the invention may be insect cells or animal cells, preferably, mammalian cells.
The invention further provides methods of inhibiting the growth of dysplastic cells associated with increased expression of FR-α comprising administering to a patient with such dysplastic cells a composition comprising an antibody of the invention. The antibody preferably blocks a biological activity of FR-α. The methods may be used for various dysplastic conditions, such as, but not limited to ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer. In preferred embodiments, the patients are human patients. In some embodiments, the antibodies are conjugated to cytotoxic agents such as, but not limited to radionuclides, toxins, and chemotherapeutic agents. In some embodiments, the antibodies are co-administered with an antifolate agent. The antifolate agent and antibody of the invention may be administered at the same time or simultaneously (that is, together), or in any order.
The invention also provides methods for decreasing the growth of cancer cells using monoclonal antibodies that specifically bind to FR-α, preferably mammalian FR-α. The methods of the invention may be used to modulate the growth of cancer cells and the progression of cancer in mammals, including humans. The cancer cells that may be inhibited include all cancer cells that have an increased expression of FR-α in relation to normal human tissues, such as but not limited to ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer cells.
Also provided by the invention are compositions of antibodies of the invention. In preferred embodiments, the compositions are substantially pure. Substantially pure compositions of antibodies of the invention preferably comprise at least about 90%, more preferably at least about 95%, even more preferably at least about 99%, and most preferably about 100% by weight of antibodies of the invention.



BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows a western blot of tumor cells showing the tetrameric and monomeric forms of FR-α.
FIG. 2 shows a western blot of Escherichia coli-expressed FR-α.
FIG. 3 shows a western blot of FR-α solubilized in the presence or absence of Triton X-100.
FIG. 4 illustrates a screening method for identifying antibody-producing cells of the invention.
FIG. 5A illustrates a sequence alignment of light chain of an anti-FR-α antibody of the invention having an amino acid sequence of SEQ ID NO:3 and the light chain of an aberrant translation product having an amino acid sequence of SEQ ID NO: 24. FIG. 5B illustrates a sequence alignment of the nucleic acid sequence of a light chain of an anti-FR-α antibody of the invention having a sequence of SEQ ID NO:8 and a nucleic acid sequence encoding the aberrant translation product having a sequence of SEQ ID NO:25.



DETAILED DESCRIPTION OF ILLUSTRATIVE EMBODIMENTS
The reference works, patents, patent applications, and scientific literature, including accession numbers to GenBank database sequences that are referred to herein establish the knowledge of those with skill in the art and are hereby incorporated by reference in their entirety to the same extent as if each was specifically and individually indicated to be incorporated by reference. Any conflict between any reference cited herein and the specific teachings of this specification shall be resolved in favor of the latter. Likewise, any conflict between an art-understood definition of a word or phrase and a definition of the word or phrase as specifically taught in this specification shall be resolved in favor of the latter.
Standard reference works setting forth the general principles of recombinant DNA technology known to those of skill in the art include Ausubel et al. CURRENT PROTOCOLS IN MOLECULAR BIOLOGY, John Wiley & Sons, New York (1998); Sambrook et al. MOLECULAR CLONING: A LABORATORY MANUAL, 2D ED., Cold Spring Harbor Laboratory Press, Plainview, N.Y. (1989); Kaufman et al., Eds., HANDBOOK OF MOLECULAR AND CELLULAR METHODS IN BIOLOGY AND MEDICINE, CRC Press, Boca Raton (1995); McPherson, Ed., DIRECTED MUTAGENESIS: A PRACTICAL APPROACH, IRL Press, Oxford (1991).
As used herein, the term “epitope” refers to the portion of an antigen to which a monoclonal antibody specifically binds.
As used herein, the term “conformational epitope” refers to a discontinuous epitope formed by a spatial relationship between amino acids of an antigen other than an unbroken series of amino acids.
As used herein, the term “multimeric” refers to a grouping of two or more identical or nearly identical units. As used herein, the term “tetrameric” refers to a grouping of four, identical or nearly identical units.
As used herein, the term “monomeric” refers to a single unit of a mature protein that assembles in groups with other units.
As used herein, the term “inhibition of growth of dysplastic cells in vitro” means a decrease in the number of tumor cells, in culture, by at least about 5%, preferably about 10%, more preferably about 20%, more preferably about 30%, more preferably about 40%, more preferably about 50%, more preferably about 60%, more preferably about 70%, more preferably about 80%, more preferably about 90%, more preferably about 95%, more preferably about 99%, and most preferably 100%. In vitro inhibition of tumor cell growth may be measured by assays known in the art, such as the GEO cell soft agar assay.
As used herein, the term “inhibition of growth of dysplastic cells in vivo” means a decrease in the number of tumor cells, in an animal, by at least about 5%, preferably about 10%, more preferably about 20%, more preferably about 30%, more preferably about 40%, more preferably about 50%, more preferably about 60%, more preferably about 70%, more preferably about 80%, more preferably about 90%, more preferably about 95%, more preferably about 99%, and most preferably 100%. In vivo modulation of tumor cell growth may be measured by assays known in the art, for example but not limited to using the Response Evaluation Criteria in Solid Tumors (RECIST) parameters (available online through the National Cancer Institute Cancer Therapy Evaluation Program).
As used herein, “dysplastic cells” refer to cells that exhibit abnormal growth properties, such as but not limited to growth in soft agar, lack of contact inhibition, failure to undergo cell cycle arrest in the absence of serum, and formation of tumors when injected into immune-compromised mice. Dysplastic cells include, but are not limited to tumors, hyperplasia, and the like.
The term “preventing” refers to decreasing the probability that an organism contracts or develops an abnormal condition.
The term “treating” refers to having a therapeutic effect and at least partially alleviating or abrogating an abnormal condition in the organism. Treating includes inhibition of tumor growth, maintenance of inhibited tumor growth, and induction of remission.
The term “therapeutic effect” refers to the inhibition of an abnormal condition. A therapeutic effect relieves to some extent one or more of the symptoms of the abnormal condition. In reference to the treatment of abnormal conditions, a therapeutic effect can refer to one or more of the following: (a) an increase or decrease in the proliferation, growth, and/or differentiation of cells; (b) inhibition (i.e., slowing or stopping) of growth of tumor cells in vivo (c) promotion of cell death; (d) inhibition of degeneration; (e) relieving to some extent one or more of the symptoms associated with the abnormal condition; and (f) enhancing the function of a population of cells. The monoclonal antibodies and derivatives thereof described herein effectuate the therapeutic effect alone or in combination with conjugates or additional components of the compositions of the invention.
As used herein, the term “inhibits the progression of cancer” refers to an activity of a treatment that slows the modulation of neoplastic disease toward end-stage cancer in relation to the modulation toward end-stage disease of untreated cancer cells.
As used herein “blocks a biological activity of FR-α” refers to the ability of the antibodies (or fragments thereof) of the invention to prevent folate binding to FR-α, to prevent the uptake of folate by cells, or to inhibit signal transduction in the cell triggered by folate.
As used herein, the term “about” refers to an approximation of a stated value within an acceptable range. Preferably the range is +/−5% of the stated value.
As used herein, the term “neoplastic disease” refers to a condition marked by abnormal proliferation of cells of a tissue.
As used herein, the term “wild-type” refers to a native sequence, for example, a native nucleic acid sequence encoding or amino acid sequence of a heavy or light chain of the antibodies of the invention. Examples of wild-type sequences of the invention include the sequences of SEQ ID NOs:1-8.
As used herein, the term “FR-α binding competitors” refers to aberrant transcripts of the nucleic acids encoding antibodies of the invention and aberrant translation products of the antibodies of the invention that do not have the biological properties of the anti-FR-α antibodies of the invention (e.g., antigen binding affinity, ability to block a biological activity of FR-α). For example, an aberrant transcript may contain a deletion, a frameshift, a nonsense mutation, or a missense mutation. An example of an aberrant translation product is an alternative splice variant. An example of a FR-α binding competitor is an antibody comprising a light chain having an amino acid sequence of SEQ ID NO:24:









MGWSCIILFLVATATGVHSDIQLTQSPSSLSASVGDRVTIT



 



CSVSSSISSNNLHWYQQKPAASSQRTSPPTTANSGVVTRTC



 



TRSAKGPRWKSNELWLHHLSSSSRHLMSS.






The light chain of such an FR-α binding competitor may be encoded by a nucleic acid having a nucleic acid sequence of SEQ ID NO:25:









ATGGGATGGAGCTGTATCATCCTCTTCTTGGTAGCAACAGCTACA



 



GGTGTCCACTCCGACATCCAGCTGACCCAGAGCCCAAGCAGCCTG



 



AGCGCCAGCGTGGGTGACAGAGTGACCATCACCTGTAGTGTCAGC



 



TCAAGTATAAGTTCCAACAACTTGCACTGGTACCAGCAGAAGCCC



 



GCAGCCTCCAGCCAGAGGACATCGCCACCTACTACTGCCAACAGT



 



GGAGTAGTTACCCGTACATGTACACGTTCGGCCAAGGGACCAAGG



 



TGGAAATCAAACGAACTGTGGCTGCACCATCTGTCTTCATCTTCC



 



CGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGT



 



GCCTGCTGAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGA



 



AGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCA



 



CAGAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCC



 



TGACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCCT



 



GCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCT



 



TCAACAGGGGAGAGTGTTAA.






As used herein, the term “purified” means a condition of being sufficiently separated from other proteins or nucleic acids with which it would naturally be associated, so as to exist in “substantially pure” form. “Purified” is not meant to exclude artificial or synthetic mixtures with other compounds or materials, or the presence of impurities that do not interfere with the fundamental activity, and that may be present, for example, due to incomplete purification, addition of stabilizers, or compounding into, for example, immunogenic preparations or pharmaceutically acceptable preparations. A “purified” antibody preferably means an antibody substantially free of FR-α binding competitors. The term “substantially pure” means comprising at least about 50-60% by weight of a given material (e.g., nucleic acid, protein, etc.). More preferably, the preparation comprises at least about 75% by weight, and most preferably about 90-95% by weight of the given compound. Purity is measured by methods appropriate for the given material (e.g., chromatographic methods, agarose or polyacrylamide gel electrophoresis, HPLC analysis, and the like).
As used herein, the phrase “substantially free of FR-α binding competitors” refers to a condition of having less than about 50%, more preferably less than about 40%, more preferably less than about 30%, more preferably less than about 20%, more preferably less than about 10%, more preferably less than about 5%, more preferably less than about 1%, more preferably less than about 0.5%, and most preferably about 0% by weight of FR-α binding competitors.
Antibodies
The antibodies of the invention specifically bind folate receptor-alpha (FR-α). In some embodiments, the antibodies of the invention specifically bind a monomeric form of FR-α. In some embodiments, the antibodies of the invention specifically bind a multimeric form of FR-α (e.g., a tetrameric form) and not the monomeric form of FR-α. Preferred antibodies of the invention block a biological activity of FR-α. In preferred embodiments, the antibodies block a biological activity of FR-α on FR-α-bearing cells. Antibodies of the invention preferably induce antibody-dependent cellular cytotoxicity (ADCC) of FR-α-bearing cells. Examples of FR-α-bearing cells include but are not limited to ovarian, lung, breast, brain, renal, colorectal, and endometrial cancer cells.
Preferred antibodies, and antibodies suitable for use in the method of the invention, include, for example, fully human antibodies, human antibody homologs, humanized antibody homologs, chimeric antibody homologs, Fab, Fab′, F(ab′)2 and F(v) antibody fragments, single chain antibodies, and monomers or dimers of antibody heavy or light chains or mixtures thereof. Antibodies of the invention are preferably monoclonal antibodies.
The antibodies of the invention may include intact immunoglobulins of any isotype including types IgA, IgG, IgE, IgD, IgM (as well as subtypes thereof). The antibodies preferably include intact IgG and more preferably IgG1. The light chains of the immunoglobulin may be kappa or lambda. The light chains are preferably kappa.
The antibodies of the invention include portions of intact antibodies that retain antigen-binding specificity, for example, Fab fragments, Fab′ fragments, F(ab′)2 fragments, F(v) fragments, heavy chain monomers or dimers, light chain monomers or dimers, dimers consisting of one heavy and one light chain, and the like. Thus, antigen binding fragments, as well as full-length dimeric or trimeric polypeptides derived from the above-described antibodies are themselves useful.
A “chimeric antibody” is an antibody produced by recombinant DNA technology in which all or part of the hinge and constant regions of an immunoglobulin light chain, heavy chain, or both, have been substituted for the corresponding regions from another animal's immunoglobulin light chain or heavy chain. In this way, the antigen-binding portion of the parent monoclonal antibody is grafted onto the backbone of another species' antibody. One approach, described in EP 0239400 to Winter et al. describes the substitution of one species' complementarity determining regions (CDRs) for those of another species, such as substituting the CDRs from human heavy and light chain immunoglobulin variable region domains with CDRs from mouse variable region domains. These altered antibodies may subsequently be combined with human immunoglobulin constant regions to form antibodies that are human except for the substituted murine CDRs which are specific for the antigen. Methods for grafting CDR regions of antibodies may be found, for example in Riechmann et al. (1988) Nature 332:323-327 and Verhoeyen et al. (1988) Science 239:1534-1536.
The direct use of rodent monoclonal antibodies (MAbs) as human therapeutic agents led to human anti-rodent antibody (“HARA”) (for example, human anti-mouse antibody (“HAMA”)) responses which occurred in a significant number of patients treated with the rodent-derived antibody (Khazaeli, et al., (1994) Immunother. 15:42-52). Chimeric antibodies containing fewer murine amino acid sequences are believed to circumvent the problem of eliciting an immune response in humans.
Refinement of antibodies to avoid the problem of HARA responses led to the development of “humanized antibodies.” Humanized antibodies are produced by recombinant DNA technology, in which at least one of the amino acids of a human immunoglobulin light or heavy chain that is not required for antigen binding has been substituted for the corresponding amino acid from a nonhuman mammalian immunoglobulin light or heavy chain. For example, if the immunoglobulin is a mouse monoclonal antibody, at least one amino acid that is not required for antigen binding is substituted using the amino acid that is present on a corresponding human antibody in that position. Without wishing to be bound by any particular theory of operation, it is believed that the “humanization” of the monoclonal antibody inhibits human immunological reactivity against the foreign immunoglobulin molecule.
As a non-limiting example, a method of performing complementarity determining region (CDR) grafting may be performed by sequencing the mouse heavy and light chains of the antibody of interest that binds to the target antigen (e.g., FR-α) and genetically engineering the CDR DNA sequences and imposing these amino acid sequences to corresponding human V regions by site directed mutagenesis. Human constant region gene segments of the desired isotype are added, and the “humanized” heavy and light chain genes are co-expressed in mammalian cells to produce soluble humanized antibody. A typical expression cell is a Chinese Hamster Ovary (CHO) cell. Suitable methods for creating the chimeric antibodies may be found, for example, in Jones et al. (1986) Nature 321:522-525; Riechmann (1988) Nature 332:323-327; Queen et al. (1989) Proc. Nat. Acad. Sci. USA 86:10029; and Orlandi et al. (1989) Proc. Natl. Acad. Sci. USA 86:3833.
Queen et al. (1989) Proc. Nat. Acad. Sci. USA 86:10029-10033 and WO 90/07861 describe the preparation of a humanized antibody. Human and mouse variable framework regions were chosen for optimal protein sequence homology. The tertiary structure of the murine variable region was computer-modeled and superimposed on the homologous human framework to show optimal interaction of amino acid residues with the mouse CDRs. This led to the development of antibodies with improved binding affinity for antigen (which is typically decreased upon making CDR-grafted chimeric antibodies). Alternative approaches to making humanized antibodies are known in the art and are described, for example, in Tempest (1991) Biotechnology 9:266-271.
“Single chain antibodies” refer to antibodies formed by recombinant DNA techniques in which immunoglobulin heavy and light chain fragments are linked to the Fv region via an engineered span of amino acids. Various methods of generating single chain antibodies are known, including those described in U.S. Pat. No. 4,694,778; Bird (1988) Science 242:423-442; Huston et al. (1988) Proc. Natl. Acad. Sci. USA 85:5879-5883; Ward et al. (1989) Nature 334:54454; Skerra et al. (1988) Science 242:1038-1041.
The antibodies of the invention may be used alone or as immunoconjugates with a cytotoxic agent. In some embodiments, the agent is a chemotherapeutic agent. In some embodiments, the agent is a radioisotope, including, but not limited to Lead-212, Bismuth-212, Astatine-211, Iodine-131, Scandium-47, Rhenium-186, Rhenium-188, Yttrium-90, Iodine-123, Iodine-125, Bromine-77, Indium-111, and fissionable nuclides such as Boron-10 or an Actinide. In other embodiments, the agent is a toxin or cytotoxic drug, including but not limited to ricin, modified Pseudomonas enterotoxin A, calicheamicin, adriamycin, 5-fluorouracil, and the like. Methods of conjugation of antibodies and antibody fragments to such agents are known in the literature.
The antibodies of the invention include derivatives that are modified, e.g., by the covalent attachment of any type of molecule to the antibody such that covalent attachment does not prevent the antibody from binding to its epitope. Examples of suitable derivatives include, but are not limited to fucosylated antibodies and fragments, glycosylated antibodies and fragments, acetylated antibodies and fragments, pegylated antibodies and fragments, phosphorylated antibodies and fragments, and amidated antibodies and fragments. The antibodies and derivatives thereof of the invention may themselves by derivatized by known protecting/blocking groups, proteolytic cleavage, linkage to a cellular ligand or other proteins, and the like. In some embodiments of the invention, at least one heavy chain of the antibody is fucosylated. In some embodiments, the fucosylation is N-linked. In some preferred embodiments, at least one heavy chain of the antibody comprises a fucosylated, N-linked oligosaccharide.
The antibodies of the invention include variants having single or multiple amino acid substitutions, deletions, additions, or replacements that retain the biological properties (e.g., block a biological activity of FR-α, binding affinity) of the antibodies of the invention. The skilled person can produce variants having single or multiple amino acid substitutions, deletions, additions or replacements. These variants may include, inter alia: (a) variants in which one or more amino acid residues are substituted with conservative or nonconservative amino acids, (b) variants in which one or more amino acids are added to or deleted from the polypeptide, (c) variants in which one or more amino acids include a substituent group, and (d) variants in which the polypeptide is fused with another peptide or polypeptide such as a fusion partner, a protein tag or other chemical moiety, that may confer useful properties to the polypeptide, such as, for example, an epitope for an antibody, a polyhistidine sequence, a biotin moiety and the like. Antibodies of the invention may include variants in which amino acid residues from one species are substituted for the corresponding residue in another species, either at the conserved or nonconserved positions. In another embodiment, amino acid residues at nonconserved positions are substituted with conservative or nonconservative residues. The techniques for obtaining these variants, including genetic (suppressions, deletions, mutations, etc.), chemical, and enzymatic techniques, are known to the person having ordinary skill in the art. Antibodies of the invention also include antibody fragments. A “fragment” refers to polypeptide sequences which are preferably at least about 40, more preferably at least to about 50, more preferably at least about 60, more preferably at least about 70, more preferably at least about 80, more preferably at least about 90, and more preferably at least about 100 amino acids in length, and which retain some biological activity or immunological activity of the full-length sequence, for example, the ability to block a biological activity of FR-α and/or FR-α binding affinity.
The invention also encompasses fully human antibodies such as those derived from peripheral blood mononuclear cells of ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer patients. Such cells may be fused with myeloma cells, for example, to form hybridoma cells producing fully human antibodies against FR-α.
In preferred embodiments of the invention, the antibody comprises a light chain comprising an amino acid sequence of SEQ ID NO:1:









DIQLTQSPSSLSASVGDRVTITCSVSSSISSNNLHWYQQKPGKAP



 



KPWIYGTSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ



 



QWSSYPYMYTFGQGTKVEIK.






In some preferred embodiments, the antibody of the invention comprises a light chain comprising an amino acid sequence of SEQ ID NO:2:










DIQLTQSPSSLSASVGDRVTITCSVSSSISSNNLHWYQQKPGKAP



 



KPWIYGTSNLASGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ



 



QWSSYPYMYTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASV



 



VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSS



 



TLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC.






In some preferred embodiments, the antibody of the invention comprises a light chain comprising an amino acid sequence of SEQ ID NO:3:










MGWSCIILFLVATATGVHSDIQLTQSPSSLSASVGDRVTITCSVSS



 



SISSNNLHWYQQKPGKAPKPWIYGTSNLASGVPSRFSGSGSGTDYT



 



FTISSLQPEDIATYYCQQWSSYPYMYTFGQGTKVEIKRTVAAPSVF



 



IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES



 



VTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKS



 



FNRGEC






(leader sequence underlined).
Also within the scope of the invention are antibodies comprising a heavy chain comprising an amino acid sequence of SEQ ID NO:4:









EVQLVESGGGVVQPGRSLRLSCSASGFTFSGYGLSWVRQAPGKGLE



 



WVAMISSGGSYTYYADSVKGRFAISRDNAKNTLFLQMDSLRPEDTG



 



VYFCARHGDDPAWFAYWGQGTPVTVSS.






In some preferred embodiments of the invention, the antibodies of the invention comprise a heavy chain comprising an amino acid sequence of SEQ ID NO:5:










EVQLVESGGGVVQPGRSLRLSCSASGFTFSGYGLSWVRQAPGKGLE



 



WVAMISSGGSYTYYADSVKGRFAISRDNAKNTLFLQMDSLRPEDTG



 



VYFCARHGDDPAWFAYWGQGTPVTVSSASTKGPSVFPLAPSSKSTS



 



GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL



 



SSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPP



 



CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVK



 



FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYK



 



CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLT



 



CLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV



 



DKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK.






In some preferred embodiments of the invention, the heavy chain of the antibody comprises an amino acid sequence of SEQ ID NO:6:








MGWSCIILFLVATATGVHSEVQLVESGGGVVQPGRSLRLSCSASGFT


 


FSGYGLSWVRQAPGKGLEWVAMISSGGSYTYYADSVKGRFAISRDNA


 


KNTLFLQMDSLRPEDTGVYFCARHGDDPAWFAYWGQGTPVTVSSAST


 


KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV


 


HTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKK


 


VEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTC


 


VVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTV


 


LHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR


 


DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDG


 


SFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK






(leader sequence underlined).
In some embodiments of the invention, the antibody comprises a heavy chain comprising an amino acid sequence of SEQ ID NO:4, 5, or 6 and a light chain comprising an amino acid sequence of SEQ ID NO:1, 2, or 3. In more preferred embodiments, the antibody comprises a heavy chain comprising an amino acid sequence of SEQ ID NO:5 and a light chain comprising an amino acid sequence of SEQ ID NO:2. In some embodiments of the invention, the antibody comprises a heavy chain comprising an amino acid sequence SEQ ID NO:6 and a light chain comprising an amino acid sequence of SEQ ID NO:3.
The antibodies of the invention are preferably nontoxic as demonstrated, for example, in vivo toxicology studies.
The antibodies and derivatives thereof of the invention have binding affinities that include a dissociation constant (Kd) of less than 1×10−2. In some embodiments, the Kd is less than 1×10−3. In other embodiments, the Kd is less than 1×10−4. In some embodiments, the Kd is less than 1×10−5. In still other embodiments, the Kd is less than 1×10−6. In other embodiments, the Kd is less than 1×10−7. In other embodiments, the Kd is less than 1×10−8. In other embodiments, the Kd is less than 1×10−9. In other embodiments, the Kd is less than 1×10−10. In still other embodiments, the Kd is less than 1×10−11. In some embodiments, the Kd is less than 1×10−12. In other embodiments, the Kd is less than 1×10−13. In other embodiments, the Kd is less than 1×10−14. In still other embodiments, the Kd is less than 1×10−15.
Without wishing to be bound by any particular theory, it is believed that the antibodies of some embodiments of the invention are particularly useful in binding the multimeric form of FR-α due to an increased avidity of the antibody as both “arms” of the antibody (Fab fragments) bind to separate FR-α molecules that make up the multimer. This leads to a decrease in the dissociation (Kd) of the antibody and an overall increase in the observed affinity (KD).
Nucleic Acids
The invention also includes nucleic acids encoding the heavy chain and/or light chain of the anti-FR-α antibodies of the invention. “Nucleic acid” or a “nucleic acid molecule” as used herein refers to any DNA or RNA molecule, either single- or double-stranded and, if single-stranded, the molecule of its complementary sequence in either linear or circular form. In discussing nucleic acid molecules, a sequence or structure of a particular nucleic acid molecule may be described herein according to the normal convention of providing the sequence in the 5′ to 3′ direction. In some embodiments of the invention, nucleic acids are “isolated.” This term, when applied to DNA, refers to a DNA molecule that is separated from sequences with which it is immediately contiguous in the naturally occurring genome of the organism in which it originated. For example, an “isolated nucleic acid” may comprise a DNA molecule inserted into a vector, such as a plasmid or virus vector, or integrated into the genomic DNA of a prokaryotic or eukaryotic cell or host organism. When applied to RNA, the term “isolated nucleic acid” refers primarily to an RNA molecule encoded by an isolated DNA molecule as defined above. Alternatively, the term may refer to an RNA molecule that has been sufficiently separated from other nucleic acids with which it would be associated in its natural state (i.e., in cells or tissues). An isolated nucleic acid (either DNA or RNA) may further represent a molecule produced directly by biological or synthetic means and separated from other components present during its production.
Nucleic acids of the invention include nucleic acids having at least 80%, more preferably at least about 90%, more preferably at least about 95%, and most preferably at least about 98% homology to nucleic acids of the invention. The terms “percent similarity”, “percent identity” and “percent homology” when referring to a particular sequence are used as set forth in the University of Wisconsin GCG software program. Nucleic acids of the invention also include complementary nucleic acids. In some instances, the sequences will be fully complementary (no mismatches) when aligned. In other instances, there may be up to about a 20% mismatch in the sequences.
Nucleic acids of the invention also include fragments of the nucleic acids of the invention. A “fragment” refers to a nucleic acid sequence that is preferably at least about 10 nucleic acids in length, more preferably about 40 nucleic acids, and most preferably about 100 nucleic acids in length. A “fragment” can also mean a stretch of at least about 100 consecutive nucleotides that contains one or more deletions, insertions, or substitutions. A “fragment” can also mean the whole coding sequence of a gene and may include 5′ and 3′ untranslated regions.
The encoded antibody light chain preferably comprises an amino acid sequence of SEQ ID NO:1, 2, or 3. The encoded antibody heavy chain preferably comprises an amino acid sequence of SEQ ID NO:4, 5, or 6. In some embodiments of the invention, the heavy chain of the antibody is encoded by a nucleic acid comprising the nucleotide sequence of SEQ ID NO:7:









ATGGGATGGAGCTGTATCATCCTCTTCTTGGTAGCAACAGCTAC



 



AGGTGTCCACTCCGAGGTCCAACTGGTGGAGAGCGGTGGAGGTG



 



TTGTGCAACCTGGCCGGTCCCTGCGCCTGTCCTGCTCCGCATCT



 



GGCTTCACCTTCAGCGGCTATGGGTTGTCTTGGGTGAGACAGGC



 



ACCTGGAAAAGGTCTTGAGTGGGTTGCAATGATTAGTAGTGGTG



 



GTAGTTATACCTACTATGCAGACAGTGTGAAGGGTAGATTTGCA



 



ATATCGCGAGACAACGCCAAGAACACATTGTTCCTGCAAATGGA



 



CAGCCTGAGACCCGAAGACACCGGGGTCTATTTTTGTGCAAGAC



 



ATGGGGACGATCCCGCCTGGTTCGCTTATTGGGGCCAAGGGACC



 



CCGGTCACCGTCTCCTCAGCCTCCACCAAGGGCCCATCGGTCTT



 



CCCCCTGGCACCCTCCTCCAAGAGCACCTCTGGGGGCACAGCGG



 



CCCTGGGCTGCCTGGTCAAGGACTACTTCCCCGAACCGGTGACG



 



GTGTCGTGGAACTCAGGCGCCCTGACCAGCGGCGTGCACACCTT



 



CCCGGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCG



 



TGGTGACCGTGCCCTCCAGCAGCTTGGGCACCCAGACCTACATC



 



TGCAACGTGAATCACAAGCCCAGCAACACCAAGGTGGACAAGAA



 



AGTTGAGCCCAAATCTTGTGACAAAACTCACACATGCCCACCGT



 



GCCCAGCACCTGAACTCCTGGGGGGACCGTCAGTCTTCCTCTTC



 



CCCCCAAAACCCAAGGACACCCTCATGATCTCCCGGACCCCTGA



 



GGTCACATGCGTGGTGGTGGACGTGAGCCACGAAGACCCTGAGG



 



TCAAGTTCAACTGGTACGTGGACGGCGTGGAGGTGCATAATGCC



 



AAGACAAAGCCGCGGGAGGAGCAGTACAACAGCACGTACCGTGT



 



GGTCAGCGTCCTCACCGTCCTGCACCAGGACTGGCTGAATGGCA



 



AGGAGTACAAGTGCAAGGTCTCCAACAAAGCCCTCCCAGCCCCC



 



ATCGAGAAAACCATCTCCAAAGCCAAAGGGCAGCCCCGAGAACC



 



ACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGA



 



ACCAGGTCAGCCTGACCTGCCTGGTCAAAGGCTTCTATCCCAGC



 



GACATCGCCGTGGAGTGGGAGAGCAATGGGCAGCCGGAGAACAA



 



CTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCTTCT



 



TCCTCTACAGCAAGCTCACCGTGGACAAGAGCAGGTGGCAGCAG



 



GGGAACGTCTTCTCATGCTCCGTGATGCATGAGGCTCTGCACAA



 



CCACTACACGCAGAAGAGCCTCTCCCTGTCTCCCGGGAAATGA.






In some embodiments of the invention, the light chain of the anti-folate receptor-α antibody is encoded by a nucleic acid sequence of SEQ ID NO:8:










ATGGGATGGAGCTGTATCATCCTCTTCTTGGTAGCAACAGCTA



 



CAGGTGTCCACTCCGACATCCAGCTGACCCAGAGCCCAAGCAG



 



CCTGAGCGCCAGCGTGGGTGACAGAGTGACCATCACCTGTAGT



 



GTCAGCTCAAGTATAAGTTCCAACAACTTGCACTGGTACCAGC



 



AGAAGCCAGGTAAGGCTCCAAAGCCATGGATCTACGGCACATC



 



CAACCTGGCTTCTGGTGTGCCAAGCAGATTCAGCGGTAGCGGT



 



AGCGGTACCGACTACACCTTCACCATCAGCAGCCTCCAGCCAG



 



AGGACATCGCCACCTACTACTGCCAACAGTGGAGTAGTTACCC



 



GTACATGTACACGTTCGGCCAAGGGACCAAGGTGGAAATCAAA



 



CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTG



 



ATGAGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCT



 



GAATAACTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTG



 



GATAACGCCCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAG



 



AGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCT



 



GACGCTGAGCAAAGCAGACTACGAGAAACACAAAGTCTACGCC



 



TGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGA



 



GCTTCAACAGGGGAGAGTGTTAA.






In some embodiments of the invention are provided nucleic acids encoding both a heavy chain and a light chain of an antibody of the invention. For example, a nucleic acid of the invention may comprise a nucleic acid sequence encoding an amino acid sequence of SEQ ID NO:1, 2, or 3 and a nucleic acid sequence encoding an amino acid sequence of SEQ ID NO:4, 5, or 6.

Nucleic acids of the invention can be cloned into a vector. A “vector” is a replicon, such as a plasmid, cosmid, bacmid, phage, artificial chromosome (BAC, YAC) or virus, into which another genetic sequence or element (either DNA or RNA) may be inserted so as to bring about the replication of the attached sequence or element. A “replicon” is any genetic element, for example, a plasmid, cosmid, bacmid, phage, artificial chromosome (BAC, YAC) or virus, that is capable of replication largely under its own control. A replicon may be either RNA or DNA and may be single or double stranded. In some embodiments, the expression vector contains a constitutively active promoter segment (such as but not limited to CMV, SV40, Elongation Factor or LTR sequences) or an inducible promoter sequence such as the steroid inducible pIND vector (Invitrogen), where the expression of the nucleic acid can be regulated. Expression vectors of the invention may further comprise regulatory sequences, for example, an internal ribosomal entry site. The expression vector can be introduced into a cell by transfection, for example.
Methods of Producing Antibodies to FR-α
The invention also provides methods of producing monoclonal antibodies that specifically bind FR-α. Antibodies of the invention may be produced in vivo or in vitro. One strategy for generating antibodies against FR-α involves immunizing animals with FR-α. In some embodiments, animals are immunized with the monomeric or multimeric form of FR-α. Animals so immunized will produce antibodies against the protein. Standard methods are known for creating monoclonal antibodies including, but are not limited to, the hybridoma technique (see Kohler & Milstein, (1975) Nature 256:495-497); the trioma technique; the human B-cell hybridoma technique (see Kozbor et al. (1983) Immunol. Today 4:72) and the EBV hybridoma technique to produce human monoclonal antibodies (see Cole, et al. in MONOCLONAL ANTIBODIES AND CANCER THERAPY, Alan R. Liss, Inc., 1985, pp. 77-96).
FR-α may be purified from cells or from recombinant systems using a variety of well-known techniques for isolating and purifying proteins. For example, but not by way of limitation, FR-α may be isolated based on the apparent molecular weight of the protein by running the protein on an SDS-PAGE gel and blotting the proteins onto a membrane. Thereafter, the appropriate size band corresponding to FR-α may be cut from the membrane and used as an immunogen in animals directly, or by first extracting or eluting the protein from the membrane. As an alternative example, the protein may be isolated by size-exclusion chromatography alone or in combination with other means of isolation and purification.
The invention also provides methods of producing monoclonal antibodies that specifically bind to the multimeric form of FR-α. Multimeric, for example tetrameric, FR-α may be purified from cells or from recombinant systems using a variety of well-known techniques for isolating and purifying proteins. For example, but not by way of limitation, multimeric FR-α may be isolated based on the apparent molecular weight of the protein by running the protein on an SDS-PAGE gel and blotting the proteins onto a membrane. Thereafter, the appropriate size band corresponding to the multimeric form of FR-α may be cut from the membrane and used as an immunogen in animals directly, or by first extracting or eluting the protein from the membrane. As an alternative example, the protein may be isolated by size-exclusion chromatography alone or in combination with other means of isolation and purification.
Other means of purification are available in such standard reference texts as Zola, MONOCLONAL ANTIBODIES: PREPARATION AND USE OF MONOCLONAL ANTIBODIES AND ENGINEERED ANTIBODY DERIVATIVES (BASICS: FROM BACKGROUND TO BENCH) Springer-Verlag Ltd., New York, 2000; BASIC METHODS IN ANTIBODY PRODUCTION AND CHARACTERIZATION, Chapter 11, “Antibody Purification Methods,” Howard and Bethell, Eds., CRC Press, 2000; ANTIBODY ENGINEERING (SPRINGER LAB MANUAL.), Kontermann and Dubel, Eds., Springer-Verlag, 2001.
For in vivo antibody production, animals are generally immunized with FR-α or an immunogenic portion of FR-α. The antigen is generally combined with an adjuvant to promote immunogenicity. Adjuvants vary according to the species used for immunization. Examples of adjuvants include, but are not limited to: Freund's complete adjuvant (“FCA”), Freund's incomplete adjuvant (“FIA”), mineral gels (e.g., aluminum hydroxide), surface active substances (e.g., lysolecithin, pluronic polyols, polyanions), peptides, oil emulsions, keyhole limpet hemocyanin (“KLH”), dinitrophenol (“DNP”), and potentially useful human adjuvants such as Bacille Calmette-Guerin (“BCG”) and corynebacterium parvum. Such adjuvants are also well known in the art.
Immunization may be accomplished using well-known procedures. The dose and immunization regimen will depend on the species of mammal immunized, its immune status, body weight, and/or calculated surface area, etc. Typically, blood serum is sampled from the immunized mammals and assayed for anti-FR-α antibodies using appropriate screening assays as described below, for example.
A common method for producing humanized antibodies is to graft CDR sequences from a MAb (produced by immunizing a rodent host) onto a human Ig backbone, and transfection of the chimeric genes into Chinese Hamster Ovary (CHO) cells which in turn produce a functional Ab that is secreted by the CHO cells (Shields, R. L., et al. (1995) Anti-IgE monoclonal antibodies that inhibit allergen-specific histamine release. Int Arch. Allergy Immunol. 107:412-413). The methods described within this application are also useful for generating genetic alterations within Ig genes or chimeric Igs transfected within host cells such as rodent cell lines, plants, yeast and prokaryotes (Frigerio L, et al. (2000) Assembly, secretion, and vacuolar delivery of a hybrid immunoglobulin in plants. Plant Physiol. 123:1483-1494).
Splenocytes from immunized animals may be immortalized by fusing the splenocytes (containing the antibody-producing B cells) with an immortal cell line such as a myeloma line. Typically, myeloma cell line is from the same species as the splenocyte donor. In one embodiment, the immortal cell line is sensitive to culture medium containing hypoxanthine, aminopterin and thymidine (“HAT medium”). In some embodiments, the myeloma cells are negative for Epstein-Barr virus (EBV) infection. In preferred embodiments, the myeloma cells are HAT-sensitive, EBV negative and Ig expression negative. Any suitable myeloma may be used. Murine hybridomas may be generated using mouse myeloma cell lines (e.g., the P3-NS1/1-Ag4-1, P3-x63-Ag8.653 or Sp2/O-Ag14 myeloma lines). These murine myeloma lines are available from the ATCC. These myeloma cells are fused to the donor splenocytes polyethylene glycol (“PEG”), preferably 1500 molecular weight polyethylene glycol (“PEG 1500”). Hybridoma cells resulting from the fusion are selected in HAT medium which kills unfused and unproductively fused myeloma cells. Unfused splenocytes die over a short period of time in culture. In some embodiments, the myeloma cells do not express immunoglobulin genes.
Hybridomas producing a desired antibody which are detected by screening assays such as those described below may be used to produce antibodies in culture or in animals. For example, the hybridoma cells may be cultured in a nutrient medium under conditions and for a time sufficient to allow the hybridoma cells to secrete the monoclonal antibodies into the culture medium. These techniques and culture media are well known by those skilled in the art. Alternatively, the hybridoma cells may be injected into the peritoneum of an unimmunized animal. The cells proliferate in the peritoneal cavity and secrete the antibody, which accumulates as ascites fluid. The ascites fluid may be withdrawn from the peritoneal cavity with a syringe as a rich source of the monoclonal antibody.
Another non-limiting method for producing human antibodies is described in U.S. Pat. No. 5,789,650 which describes transgenic mammals that produce antibodies of another species (e.g., humans) with their own endogenous immunoglobulin genes being inactivated. The genes for the heterologous antibodies are encoded by human immunoglobulin genes. The transgenes containing the unrearranged immunoglobulin encoding regions are introduced into a non-human animal. The resulting transgenic animals are capable of functionally rearranging the transgenic immunoglobulin sequences and producing a repertoire of antibodies of various isotypes encoded by human immunoglobulin genes. The B-cells from the transgenic animals are subsequently immortalized by any of a variety of methods, including fusion with an immortalizing cell line (e.g., a myeloma cell).
Antibodies against FR-α may also be prepared in vitro using a variety of techniques known in the art. For example, but not by way of limitation, fully human monoclonal antibodies against FR-α may be prepared by using in vitro-primed human splenocytes (Boerner et al. (1991) J. Immunol. 147:86-95).
Alternatively, for example, the antibodies of the invention may be prepared by “repertoire cloning” (Persson et al. (1991) Proc. Nat. Acad. Sci. USA 88:2432-2436; and Huang and Stollar (1991) J. Immunol. Methods 141:227-236). Further, U.S. Pat. No. 5,798,230 describes preparation of human monoclonal antibodies from human B antibody-producing B cells that are immortalized by infection with an Epstein-Barr virus that expresses Epstein-Barr virus nuclear antigen 2 (EBNA2). EBNA2, required for immortalization, is then inactivated resulting in increased antibody titers.
In another embodiment, antibodies against FR-α are formed by in vitro immunization of peripheral blood mononuclear cells (“PBMCs”). This may be accomplished by any means known in the art, such as, for example, using methods described in the literature (Zafiropoulos et al. (1997) J. Immunological Methods 200:181-190).
Methods for producing antibody-producing cells of the invention also include methods for developing hypermutable antibody-producing cells by taking advantage of the conserved mismatch repair (MMR) process of host cells. Dominant negative alleles of such genes, when introduced into cells or transgenic animals, increase the rate of spontaneous mutations by reducing the effectiveness of DNA repair and thereby render the cells or animals hypermutable. Blocking MMR in antibody-producing cells such as but not limited to: hybridomas; mammalian cells transfected with genes encoding for Ig light and heavy chains; mammalian cells transfected with genes encoding for single chain antibodies; eukaryotic cells transfected with Ig genes, can enhance the rate of mutation within these cells leading to clones that have enhanced antibody production, cells containing genetically altered antibodies with enhanced biochemical properties such as increased antigen binding, cells that produce antibodies comprising substantially only the antibody of the invention, and/or cells that are substantially free of FR-α binding competitors. The process of MMR, also called mismatch proofreading, is carried out by protein complexes in cells ranging from bacteria to mammalian cells. A MMR gene is a gene that encodes for one of the proteins of such a mismatch repair complex. Although not wanting to be bound by any particular theory of mechanism of action, a MMR complex is believed to detect distortions of the DNA helix resulting from non-complementary pairing of nucleotide bases. The non-complementary base on the newer DNA strand is excised, and the excised base is replaced with the appropriate base, which is complementary to the older DNA strand. In this way, cells eliminate many mutations that occur as a result of mistakes in DNA replication.
Dominant negative alleles cause a MMR defective phenotype even in the presence of a wild-type allele in the same cell. An example of a dominant negative allele of a MMR gene is the human gene hPMS2-134, which carries a truncating mutation at codon 134. The mutation causes the product of this gene to abnormally terminate at the position of the 134th amino acid, resulting in a shortened polypeptide containing the N-terminal 133 amino acids. Such a mutation causes an increase in the rate of mutations, which accumulate in cells after DNA replication. Expression of a dominant negative allele of a mismatch repair gene results in impairment of mismatch repair activity, even in the presence of the wild-type allele. Any allele which produces such effect can be used in this invention. Dominant negative alleles of a MMR gene can be obtained from the cells of humans, animals, yeast, bacteria, or other organisms. Such alleles can be identified by screening cells for defective MMR activity. Cells from animals or humans with cancer can be screened for defective mismatch repair. Cells from colon cancer patients may be particularly useful. Genomic DNA, cDNA, or mRNA from any cell encoding a MMR protein can be analyzed for variations from the wild type sequence. Dominant negative alleles of a MMR gene can also be created artificially, for example, by producing variants of the hPMS2-134 allele or other MMR genes. Various techniques of site-directed mutagenesis can be used. The suitability of such alleles, whether natural or artificial, for use in generating hypermutable cells or animals can be evaluated by testing the mismatch repair activity caused by the allele in the presence of one or more wild-type alleles, to determine if it is a dominant negative allele. Examples of mismatch repair proteins and nucleic acid sequences include mouse PMS2 (SEQ ID NOs:9 and 10), human PMS2 (SEQ ID NOs:11 and 12), human PMS1 (SEQ ID NOs:13 and 14), human MSH2 (SEQ ID NOs: 15 and 16), human MLH1 (SEQ ID NOs:17 and 18), and human PMS2-134 (SEQ ID NOs:19 and 20).
A cell into which a dominant negative allele of a mismatch repair gene has been introduced will become hypermutable. This means that the spontaneous mutation rate of such cells or animals is elevated compared to cells or animals without such alleles. The degree of elevation of the spontaneous mutation rate can be at least 2-fold, 5-fold, 10-fold, 20-fold, 50-fold, 100-fold, 200-fold, 500-fold, or 1000-fold that of the normal cell or animal. The use of chemical mutagens such as but limited to methane sulfonate, dimethyl sulfonate, 06-methyl benzadine, MNU, ENU, etc. can be used in MMR defective cells to increase the rates an additional 10 to 100 fold that of the MMR deficiency itself.
According to one aspect of the invention, a polynucleotide encoding a dominant negative form of a MMR protein is introduced into a cell. Preferably the cell produces anti-FR-α antibodies. In some embodiments, the cells produce an antibody comprising a heavy chain comprising an amino acid sequence of SEQ ID NO:4, 5, or 6 and a light chain comprising an amino acid sequence of SEQ ID NO:1, 2, or 3. In some preferred embodiments, the cells comprise a nucleic acid comprising a nucleotide sequence of SEQ ID NO:7 and/or a nucleotide sequence of SEQ ID NO:8. The dominant negative MMR gene can be any dominant negative allele encoding a protein which is part of a MMR complex, for example, PMS2, PMS1, MLH1, or MSH2. The dominant negative allele can be naturally occurring or made in the laboratory. The polynucleotide can be in the form of genomic DNA, cDNA, RNA, or a chemically synthesized polynucleotide.
The polynucleotide can be cloned into an expression vector containing a constitutively active promoter segment (such as but not limited to CMV, SV40, Elongation Factor or LTR sequences) or an inducible promoter sequence such as the steroid inducible pIND vector (Invitrogen), where the expression of the dominant negative MMR gene can be regulated. The polynucleotide can be introduced into the cell by transfection.
According to another aspect of the invention, an immunoglobulin (Ig) gene, a set of Ig genes or a chimeric gene containing whole or parts of an Ig gene can be transfected into MMR-deficient cell hosts, the cell is grown and screened for clones with new phenotypes and/or genotypes. MMR-defective cells may be of human, primates, mammals, rodent, plant, yeast or of the prokaryotic kingdom. The gene encoding the Ig of the cell with the new phenotype or genotype may be isolated from the respective clone and introduced into genetically stable cells (i.e., cells with normal MMR) to provide clones that consistently produce the Ig. The method of isolating the Ig gene may be any method known in the art. Introduction of the isolated polynucleotide encoding the Ig may also be performed using any method known in the art, including, but not limited to transfection of an expression vector containing the polynucleotide encoding the Ig. As an alternative to transfecting an Ig gene, a set of Ig genes or a chimeric gene containing whole or parts of an Ig gene into an MMR-deficient host cell, such Ig genes may be transfected simultaneously with a gene encoding a dominant negative mismatch repair gene into a genetically stable cell to render the cell hypermutable.
Transfection is any process whereby a polynucleotide is introduced into a cell. The process of transfection can be carried out in a living animal, e.g., using a vector for gene therapy, or it can be carried out in vitro, e.g., using a suspension of one or more isolated cells in culture. The cell can be any type of eukaryotic cell, including, for example, cells isolated from humans or other primates, mammals or other vertebrates, invertebrates, and single celled organisms such as protozoa, yeast, or bacteria.
In general, transfection will be carried out using a suspension of cells, or a single cell, but other methods can also be applied as long as a sufficient fraction of the treated cells or tissue incorporates the polynucleotide so as to allow transfected cells to be grown and utilized. The protein product of the polynucleotide may be transiently or stably expressed in the cell. Techniques for transfection are well known. Available techniques for introducing polynucleotides include but are not limited to electroporation, transduction, cell fusion, the use of calcium chloride, and packaging of the polynucleotide together with lipid for fusion with the cells of interest. Once a cell has been transfected with the MMR gene, the cell can be grown and reproduced in culture. If the transfection is stable, such that the gene is expressed at a consistent level for many cell generations, then a cell line results.
Upon identification of the desired phenotype or trait the organism can then be genetically stabilized. Cells expressing the dominant negative alleles can be “cured” in that the dominant negative allele can be turned off, if inducible, eliminated from the cell, and the like such that the cells become genetically stable and no longer accumulate mutations at the abnormally high rate.
Cells that produce substantially only anti-FR-α antibodies of the invention or cells that are substantially free of FR-α binding competitors are selected for cloning and expansion according to the methods for determining antibody specificity described herein. An example of such a method is illustrated in FIG. 4.
Nucleic acids encoding antibodies of the invention may be recombinantly expressed. The expression cells of the invention include any insect expression cell line known, such as for example, Spodoptera frugiperda cells. The expression cell lines may also be yeast cell lines, such as, for example, Saccharomyces cerevisiae and Schizosaccharomyces pombe cells. The expression cells may also be mammalian cells such as, for example, hybridoma cells (e.g., NS0 cells), Chinese hamster ovary cells, baby hamster kidney cells, human embryonic kidney line 293, normal dog kidney cell lines, normal cat kidney cell lines, monkey kidney cells, African green monkey kidney cells, COS cells, and non-tumorigenic mouse myoblast G8 cells, fibroblast cell lines, myeloma cell lines, mouse NIH/3T3 cells, LMTK31 cells, mouse sertoli cells, human cervical carcinoma cells, buffalo rat liver cells, human lung cells, human liver cells, mouse mammary tumor cells, TRI cells, MRC 5 cells, and FS4 cells. Nucleic acids of the invention may be introduced into cell by transfection, for example. Recombinantly expressed antibodies may be recovered from the growth medium of the cells, for example.
In one embodiment of the invention, the procedure for in vitro immunization is supplemented with directed evolution of the hybridoma cells in which a dominant negative allele of a mismatch repair gene such as PMS1, PMS2, PMS2-134, PMSR2, PMSR3, MLH1, MLH2, MLH3, MLH4, MLH5, MLH6, PMSL9, MSH1, and MSH2 is introduced into the hybridoma cells after fusion of the splenocytes, or to the myeloma cells before fusion. Cells containing the dominant negative mutant will become hypermutable and accumulate mutations at a higher rate than untransfected control cells. A pool of the mutating cells may be screened, for example, for clones that are substantially free of FR-α binding competitors, clones that produce higher affinity antibodies, clones that produce higher titers of antibodies, or clones that simply grow faster or better under certain conditions. The technique for generating hypermutable cells using dominant negative alleles of mismatch repair genes is described, for example, in U.S. Pat. No. 6,808,894. Alternatively, mismatch repair may be inhibited using the chemical inhibitors of mismatch repair described by Nicolaides et al. in WO 02/054856 “Chemical Inhibitors of Mismatch Repair” published Jul. 18, 2002. The technique for enhancing antibodies using the dominant negative alleles of mismatch repair genes or chemical inhibitors of mismatch repair may be applied to mammalian expression cells expressing cloned immunoglobulin genes as well. Cells expressing the dominant negative alleles can be “cured” in that the dominant negative allele can be turned off if inducible, inactivated, eliminated from the cell, and the like, such that the cells become genetically stable once more and no longer accumulate mutations at the abnormally high rate.
Screening for Antibody Specificity
Screening for antibodies that specifically bind to FR-α may be accomplished using an enzyme-linked immunosorbent assay (ELISA) in which microtiter plates are coated with FR-α. In some embodiments, antibodies that bind FR-α from positively reacting clones can be further screened for reactivity in an ELISA-based assay to other folate receptor isoforms, for example, FR-β and/or FR-γ, using microtiter plates coated with the other folate receptor isoform(s). Clones that produce antibodies that are reactive to another isoform of folate receptor are eliminated, and clones that produce antibodies that are reactive to FR-α only may be selected for further expansion and development. Confirmation of reactivity of the antibodies to FR-α may be accomplished, for example, using a Western Blot assay in which protein from ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer cells and purified FR-α and other folate receptor isoforms are run on an SDS-PAGE gel, and subsequently are blotted onto a membrane. The membrane may then be probed with the putative anti-FR-α antibodies. Reactivity with FR-α and not another folate receptor isoform confirms specificity of reactivity for FR-α.
In some embodiments, the binding affinity of anti-FR-α antibodies is determined Antibodies of the invention preferably have a binding affinity to FR-α of at least about 1×10−7 M, more preferably at least about 1×10−8 M, more preferably at least about 1×10−9 M, and most preferably at least about 1×10−10 M. Preferred antibody-producing cells of the invention produce substantially only antibodies having a binding affinity to FR-α of at least about 1×10−7 M, more preferably at least about 1×10−8 M, more preferably at least about 1×10−9 M, and most preferably at least about 1×10−10 M. Preferred compositions of the invention comprise substantially only antibodies having a binding affinity to FR-α of at least about 1×10−7 M, more preferably at least about 1×10−8 M, more preferably at least about 1×10−9 M, and most preferably at least about 1×10−10 M.
In some embodiments, antibodies that bind the multimeric form of FR-α from positively reacting clones can be further screened for reactivity in an ELISA-based assay to the monomeric form of FR-α using microtiter plates coated with the monomeric form of FR-α. Clones that produce antibodies that are reactive to the monomeric form of FR-α are eliminated, and clones that produce antibodies that are reactive to the multimeric form only may be selected for further expansion and development. Confirmation of reactivity of the antibodies to the multimeric form of FR-α may be accomplished, for example, using a Western Blot assay in which protein from ovarian, breast, renal, colorectal, lung, endometrial, or brain cancer cells and purified multimeric and monomeric FR-α are run on an SDS-PAGE gel under reducing and non-reducing conditions, and subsequently are blotted onto a membrane. The membrane may then be probed with the putative anti-multimeric FR-α antibodies. Reactivity with the appropriately sized multimeric form of FR-α under non-reducing conditions and not the 38 kDa form of FR-α (under reducing or non-reducing conditions) confirms specificity of reactivity for the multimeric form of FR-α.
The antibodies of the invention preferably induce antibody-dependent cellular cytotoxicity (ADCC) in FR-α bearing cells. ADCC assays are known in the art. The method of the invention enabled successful production of an optimized, humanized anti-FR-α antibody with acceptable antigen binding activity (low nanomolar dissociation constant) and production rates (>10 pg/cell/day). ADCC assays using human ovarian cancer cells as target and peripheral blood mononuclear cells (PBMCs) as effector cells showed that 200 ng/ml of antibody of the invention produced in CHO cells mediated the lysis of 32% of target cells whereas lysis mediated by control IgG1/κ antibody was only 6% (paired T test=0.0008).
Anti-FR-α Antibody-Producing Cells
Antibody-producing cells of the invention include any insect expression cell line known, such as for example, Spodoptera frugiperda cells. The expression cell lines may also be yeast cell lines, such as, for example, Saccharomyces cerevisiae and Schizosaccharomyces pombe cells. The expression cells may also be mammalian cells such as, for example, hybridoma cells (e.g., NS0 cells), Chinese hamster ovary cells, baby hamster kidney cells, human embryonic kidney line 293, normal dog kidney cell lines, normal cat kidney cell lines, monkey kidney cells, African green monkey kidney cells, COS cells, and non-tumorigenic mouse myoblast G8 cells, fibroblast cell lines, myeloma cell lines, mouse NIH/3T3 cells, LMTK31 cells, mouse sertoli cells, human cervical carcinoma cells, buffalo rat liver cells, human lung cells, human liver cells, mouse mammary tumor cells, TRI cells, MRC 5 cells, and FS4 cells.
In some preferred embodiments, the antibody-producing cells of the invention produce antibodies that specifically bind to FR-α. The cells preferably are substantially free of FR-α binding competitors. In preferred embodiments, the antibody-producing cells comprise less than about 10%, preferably less than about 5%, more preferably less than about 1%, more preferably less than about 0.5%, more preferably less than about 0.1%, and most preferably 0% by weight FR-α binding competitors. In some preferred embodiments, the antibodies produced by the antibody-producing cells are substantially free of FR-α binding competitors. In preferred embodiments, antibodies produced by the antibody-producing cells comprise less than about 10%, preferably less than about 5%, more preferably less than about 1%, more preferably less than about 0.5%, more preferably less than about 0.1%, and most preferably 0% by weight FR-α binding competitors. Preferred antibody-producing cells of the invention produce substantially only antibodies having a binding affinity to FR-α of at least about 1×10−7 M, more preferably at least about 1×10−8M, more preferably at least about 1×10−9 M, and most preferably at least about 1×10−10 M.
Antibody Purification
Methods of antibody purification are known in the art. In some embodiments of the invention, methods for antibody purification include filtration, affinity column chromatography, cation exchange chromatography, anion exchange chromatography, and concentration. The filtration step preferably comprises ultrafiltration, and more preferably ultrafiltration and diafiltration. Filtration is preferably performed at least about 5-50 times, more preferably 10 to 30 times, and most preferably 14 to 27 times. Affinity column chromatography, may be performed using, for example, PROSEP Affinity Chromatography (Millipore, Billerica, Massachusetts). In a preferred embodiment, the affinity chromatography step comprises PROSEP-VA column chromatography. Eluate may be washed in a solvent detergent. Cation exchange chromatography may include, for example, SP-Sepharose Cation Exchange Chromatography. Anion exchange chromatography may include, for example but not limited to, Q-Sepharose Fast Flow Anion Exchange. The anion exchange step is preferably non-binding, thereby allowing removal of contaminants including DNA and BSA. The antibody product is preferably nanofiltered, for example, using a Pall DV 20 Nanofilter. The antibody product may be concentrated, for example, using ultrafiltration and diafiltration. The method may further comprise a step of size exclusion chromatography to remove aggregates.
Pharmaceutical Compositions of Antibodies
Another aspect of the invention features a pharmaceutical composition of anti-FR-α antibodies of the invention. The pharmaceutical compositions may be used to inhibit or reduce growth of tumor cells in a patient. The compositions of antibodies preferably are substantially free of FR-α binding competitors. In certain embodiments, the pharmaceutical composition is formulated for administration by injection or infusion.
Pharmaceutical compositions of the invention may further comprise a chemotherapeutic or cytotoxic agent. In some embodiments, the antibody is conjugated to the chemotherapeutic or cytotoxic agent. Suitable chemotherapeutic or cytotoxic agents include but are not limited to a radioisotope, including, but not limited to Lead-212, Bismuth-212, Astatine-211, Iodine-131, Scandium-47, Rhenium-186, Rhenium-188, Yttrium-90, Iodine-123, Iodine-125, Bromine-77, Indium-111, and fissionable nuclides such as Boron-10 or an Actinide. In other embodiments, the agent is a toxin or cytotoxic drug, including but not limited to ricin, modified Pseudomonas enterotoxin A, calicheamicin, adriamycin, 5-fluorouracil, and the like. Pharmaceutical compositions of the invention may comprise an antifolate compound including but not limited to 5-fluoro-2′-deoxy-uridine-5′-monophosphate (FdUMP), 5-fluorouracil, leucovorin, ZD1649, MTA, GW1843U89, ZD9331, AG337, and PT523.
Pharmaceutical compositions of the invention may be formulated with a pharmaceutically acceptable carrier or medium. Suitable pharmaceutically acceptable carriers include water, PBS, salt solution (such as Ringer's solution), alcohols, oils, gelatins, and carbohydrates, such as lactose, amylose, or starch, fatty acid esters, hydroxymethylcellulose, and polyvinyl pyrolidine. Such preparations can be sterilized, and if desired, mixed with auxiliary agents such as lubricants, preservatives, stabilizers, wetting agents, emulsifiers, salts for influencing osmotic pressure, buffers, and coloring. Pharmaceutical carriers suitable for use in the present invention are known in the art and are described, for example, in Pharmaceutical Sciences (17th Ed., Mack Pub. Co., Easton, Pa.).
Kits
According to yet another aspect of the invention, a kit is provided for inhibiting or reducing growth of tumor cells in a patient. Also provided are kits for identifying the presence of dysplastic cells in vitro or in vivo.
The kits of the invention comprise antibody or an antibody composition of the invention and instructions for using the kit in a method for inhibiting or reducing growth of tumor cells in the patient or in a method for identifying the presence of dysplastic cells, for example, in a biological sample. The kit may comprise at least one chemotherapeutic or cytotoxic reagent. The kit may comprise an antifolate compound. The kit may comprise at least one diagnostic reagent. An example of a diagnostic reagent is a detectable label, for example but not limited to a radioactive, fluorescent, or chromophoric agent (e.g., 111In-DOTA). The detectable label may comprise an enzyme. The kit may comprise instructions and/or means for administering the antibody or antibody composition, for example, by injection.
Methods of Detecting a Dysplastic Cell
The methods of the invention include methods of detecting dysplastic or cancer cells presenting FR-α on the surface, including but not limited to ovarian, breast, lung, endometrial, renal, colorectal, or brain carcinoma cells. The method may be performed in vitro on a biological sample or in vivo. Methods of detecting dysplastic cells according to the invention comprise contacting anti-FR-α antibody of the invention with a biological sample or administering anti-FR-α antibody of the invention to a patient, wherein the antibody is labeled with a detectable label, for example but not limited to a radioactive, fluorescent, or chromophoric agent (e.g., 111In-DOTA), and determining binding of the antibody to cells. The detectable label may be an enzyme.
Methods of Reducing the Growth of Tumor Cells
The methods of the invention are suitable for use in humans and non-human animals identified as having a neoplastic condition associated with an increased expression of FR-α. Non-human animals which benefit from the invention include pets, exotic (e.g., zoo animals), and domestic livestock. Preferably the non-human animals are mammals.
The invention is suitable for use in a human or animal patient that is identified as having a dysplastic disorder that is marked by increased expression of FR-α in the neoplasm in relation to normal tissues. Once such a patient is identified as in need of treatment for such a condition, the method of the invention may be applied to effect treatment of the condition. Tumors that may be treated include, but are not limited to ovarian, breast, renal, colorectal, lung, endometrial, brain, fallopian tube, or uterine tumors, and certain leukemia cells. In some embodiments, the tumor is cisplatin-resistant.
The antibodies and derivatives thereof for use in the invention may be administered orally in any acceptable dosage form such as capsules, tablets, aqueous suspensions, solutions or the like. The antibodies and derivatives thereof may also be administered parenterally including but not limited to: subcutaneous, intravenous, intramuscular, intra-articular, intra-synovial, intrasternal, intranasal, topically, intrathecal, intrahepatic, intralesional, and intracranial injection or infusion techniques. Generally, the antibodies will be intravenously or intraperitoneally, for example, by injection.
The antibodies and derivatives of the invention may be administered alone or with a pharmaceutically acceptable carrier, including acceptable adjuvants, vehicles and excipients, for example, phosphate buffered saline.
The antibodies and derivatives of the invention may also be administered with one or more antifolate compounds that are used to treat cancer. The antifolate compounds include, but are not limited to 5-fluoro-2′-deoxy-uridine-5′-monophosphate (FdUMP); 5-fluorouracil (5-FU); L-5-formyltetrahydrofolate (“leucovorin”); N-[5-(N-(3,4-dihydro-2-methyl-4-oxoquinazolin-6-yl-methyl)-amino)-2-thenyl)]-L-glutamic acid (“ZD1649”; also known as “Tomudex”) (Jackman et al. (1991) Cancer Res. 51:5579-5586); N-(4-(2-(2-amino-4,7-dihydro-4-oxo-3H-pyrrolo[2,3-D]pyrimidin-5-yl)-ethyl)-benzoyl]-L-glutamic acid (“multi-targeted antifolate” (MTA) also known as “LY231514,” “ALIMTA,” and “Pemetrexed”)(Taylor et al. (1992) J. Med. Chem. 35:4450-4454; Shih et al. (1997) Cancer Res. 57:1116-1123); (S)-2-(5)-(((1,2-dihydro-3-methyl-1-oxobenzo(f)quinazolin-9-yl)-methyl)-amino)-oxo-2-isoindolinyl)-glutaric acid (“GW1843U89”) (Hanlon and Ferone (1996) Cancer Res. 56:3301-3306); (2S)-2-{O-fluoro-p-[N-(2,7-dimethyl-4-oxo-3,4-dihydro-quinazolin-6-yl-methyl)-N-prop-2-ynyl)amino]benzamido}-4-(tetrazol-5-yl)-butyric acid (“ZD9331”) (Jackman et al. (1997) Clin. Cancer Res. 3:911-921); 3,4-dihydro-amino-6-methyl-4-oxo-5-(4-pyridylthio)-quinazoline (“AG337” also known as “Thymitaq”) (Webber et al. (1996) Cancer Chemother. Pharmacol. 37:509-517; Rafi et al. (1998) J. Clin. Oncol. 16:1331-1341), and Nα-(4-amino-4-deoxypteroyl)-Nδ-(hemiphthaloyl-L-ornithine) (“PT523”) (Rhee et al. (1994) Mol. Pharmacol. 45:783-791; Rowowsky (1999) Curr. Med. Chem. 6:329-352). The antifolate compounds may be administered before, after, or simultaneously with the anti-FR-α antibodies of the invention. The amounts of antifolate compounds to be administered may be the dosages currently used, or may be increased or decreased, as can readily be determined by a physician based on achieving decreased tumor growth or tumor elimination without causing any untoward effects on the patient.
The effective dosage will depend on a variety of factors. It is well within the purview of a skilled physician to adjust the dosage for a given patient according to various parameters such as body weight, the goal of treatment, the highest tolerated dose, the specific formulation used, the route of administration and the like. Generally, dosage levels of between about 5.88 mg/m2 and about 294.12 mg/m2 (i.e., 10 to 500 mg antibody) per day of the antibody or derivative thereof are suitable. In some embodiments, the dose will be about 29.41 mg/m2 to about 176.47 mg/m2 (i.e., 50 to 300 mg antibody) per day of the antibody or derivative thereof. In other embodiments, the dose will be about 58.82 mg/m2 to about 147.06 mg/m2 (i.e., 100 to 250 mg antibody) per day. In still other embodiments, the dose will be about 88.24 mg/m2 to about 117.65 mg/m2 (i.e., 150 to 200 mg antibody) per day. Dosing may be as a bolus or an infusion. Dosages may be given once a day or multiple times in a day. Further, dosages may be given multiple times of a period of time. In some embodiments, the doses are given every 1-14 days. In some embodiments, the antibodies or derivatives thereof are given as a dose of about 10 to 500 mg i.p. In other embodiments, the antibodies of derivatives thereof are provided at about 50 to 300 mg i.v. In still other embodiments, the antibodies or derivatives thereof are provided such that a plasma level of at least about 1 ug/ml is maintained.
Effective treatment may be assessed in a variety of ways. In one embodiment, effective treatment is determined by a slowed progression of tumor growth. In other embodiments, effective treatment is marked by shrinkage of the tumor (i.e., decrease in the size of the tumor determined, for example, using Response Evaluation Criteria in Solid Tumors (RECIST) available online through the National Cancer Institute Cancer Therapy Evaluation Program). In other embodiments, effective treatment is marked by inhibition of metastasis of the tumor. In still other embodiments, effective therapy is measured by increased well-being of the patient including such signs as weight gain, regained strength, decreased pain, thriving, and subjective indications from the patient of better health.
The following Examples are provided to illustrate the present invention, and should not be construed as limiting thereof.
EXAMPLES
Example 1
Generation of Anti-FR-α Antibody-Producing Cells
Murine antibody LK26 was raised against choriocarcinoma cell line Lu-75(c). LK26 was humanized by CDR grafting, yielding an IgG (IgG1/κ subtype) expressed in NS0 cell lines, according to the method of U.S. Pat. No. 6,124,106. The NS0 cell line was transfected with a hPMS2-134 expression plasmid. The MMR gene was cloned into the pEF expression vector, which contains the elongation factor promoter upstream of the cloning site followed by a mammalian polyadenylation signal. This vector also contains the NEOr gene that allows for selection of cells retaining this plasmid. Briefly, cells were transfected with 1 μg of each vector using polyliposomes following the manufacturer's protocol (Life Technologies). Cells were then selected in 0.5 mg/ml of G418 for 10 days and G418 resistant cells were pooled together to analyze for gene expression. The pEF construct contains an intron that separates the exon 1 of the EF gene from exon 2, which is juxtaposed to the 5′ end of the polylinker cloning site. This allows for a rapid reverse transcriptase polymerase chain reaction (RT-PCR) screen for cells expressing the spliced products. Cells were isolated and their RNA extracted using the trizol method as previously described (Nicolaides N. C., Kinzler, K. W., and Vogelstein, 8. (1995) Analysis of the 5′ region of PMS2 reveals heterogeneous transcripts and a novel overlapping gene. Genomics 29:329-334).
Heavy chain RNA was reverse transcribed using a forward primer (5′-GATCGGATCCACCATGGGATGGAGCTGTATCATCC-3′ (SEQ ID NO:21)) and reverse primer (5′-CTGATCTAGATCATTTCCCGGGAGACAGGGAGAGGCTCTTCTGCGTGTA-3′ (SEQ ID NO:22)). Light chain RNA was reverse transcribed using a forward primer of SEQ ID NO:21 and a reverse primer (5′-CTGATCTAGATTAACACTCTCCCCTGTTGAAGCTCTT-3′ (SEQ ID NO:23)). PCR reactions were carried out with high fidelity HERCULASE DNA polymerase (STRATAGENE, La Jolla, Calif.). PCR products were digested with BamHI and XbaI and cloned into the same restriction sites of the eukaryotic expression vectors pEF4 (light chain) and pEF6 (heavy chain). Vector pEF4 (INVITROGEN) is a 5.8 kb vector carrying the zeocin resistance gene for selection of stable transfectants in eukaryotic cells. The cDNA insert is cloned downstream of hEF-intron 1, and its transcription is controlled by the human EF1alpha promoter. Downstream of the cDNA insert is the BGH polyadenylation signal allowing for efficient polyadenylation of the transcript. Vector pEF6 (INVITROGEN) is similar to pEF4 but carries the blasticidin resistance gene instead of the zeocin resistance gene. The sequence of both strands of the cDNA inserts was verified.
The resulting cDNAs coding for the full-length humanized anti-FR-α antibody heavy and light chains were transfected into CHO-K1 (ATCC CCL-61) cells. CHO-K1 cells were transfected with 0.5 micrograms of each plasmid using FUGENE transfection reagent (Roche) according to the manufacturer's instructions. Cells were maintained in RPMI1640/10% FBS/2 mM L-glutamine. Stable cell lines were selected with Zeocin (200 micrograms/milliliter) and Blasticidin (5 micrograms/ milliliter). Expression of antibody was verified by anti-human IgG ELISA. Stably transfected pools of cells were single cell cloned by limited dilution and high expressor cell lines were selected. High titers were verified in secondary and tertiary screens. The cell line was adapted to serum-free medium (CHO-S-SFMII followed by EX-CELL 302). Antibody production was verified by ELISA. The cell line also was adapted to protein-free CHO media (CD94111; Irvine Scientific) plus 8 mM L-glutamine with a soy hydrolysate pulse at day 2. Cells were stored for use in liquid nitrogen. The cells were stable for at least 13 passages in the absence of selection media as determined by FACS analysis. Cell secretion was stable for at least 20 passages as determined by ELISA. Large scale antibody production is possible. For example, antibody was produced in a bioreactor on a scale of 15 L, 70 L, and 340 L.
Example 2
Screening Strategy to Identify Antibody-Producing Clones and Characterization of Anti-FR-α Antibody
An application of the methods presented within this document is the use of MMR-deficient immunoglobulin-producing cells to create a cell that is substantially free of FR-α binding competitors or a cell that produces substantially only the target immunoglobulin, for example, a FR-α antibody of the invention, including but not limited to an antibody comprising a light chain comprising an amino acid sequence of SEQ ID NO:2 or 3 and a heavy chain comprising an amino acid sequence of SEQ ID NO:5 or 6. FIG. 4 outlines the screening procedure to identify clones that produce high affinity MAbs. The assay employs the use of a plate Enzyme Linked Immunosorbant Assay (ELISA) to screen for clones that produce high-affinity MAbs. 96-well plates containing single immunoglobulin-producing cells are grown in growth medium plus 0.5 mg/ml G418 to ensure clones retain the expression vector. Plates are screened using an hIgG plate ELISA, whereby a 96 well plate is coated with FR-α. Alternatively, the plate is coated with a specific antibody against the anti-FR-α antibody. As another alternative in cases in which the immunoglobulin-producing cell is non-human, the plate may be coated with anti-human IgG1 antibody. Plates are washed 3 times in calcium and magnesium free phosphate buffered saline solution (PBS−/−) and blocked in 100 μls of PBS−/− with 5% dry milk for 1 hour at room temperature. Wells are rinsed and incubated with 100 μls of a PBS solution containing a 1:5 dilution of conditioned medium from each cell clone for 2 hours. Plates are then washed 3 times with PBS−/− and incubated for 1 hour at room temperature with 50 μls of a PBS−/− solution containing 1:3000 dilution of a sheep anti-mouse horse radish peroxidase (HRP) conjugated secondary antibody such as anti-human IgG antibody. Plates are then washed 3 times with PBS−/− and incubated with 50 μls of TMB-HRP substrate (BioRad) for 15 minutes at room temperature to detect amount of antibody produced by each clone. Reactions are stopped by adding 50 μls of 500 mM sodium bicarbonate and analyzed by OD at 415 nm using a BioRad plate reader. Clones exhibiting an enhanced signal over background cells (control cells with vector alone; control cells not containing the dominant negative mismatch repair allele) are then isolated and expanded into 10 ml cultures for additional characterization and confirmation of ELISA data in triplicate experiments. ELISAs are also performed on conditioned (CM) from the same clones to measure total Ig production within the conditioned medium of each well. Clones that produce an increased ELISA signal and have increased antibody levels are then further analyzed for variants that are substantially free of FR-α binding competitors. Clones that produce higher OD values as determined by ELISA are further analyzed at the genetic level to confirm the absence of FR-α binding competitors hence yielding a stronger ELISA signal. Briefly, 100,000 cells are harvested and extracted for RNA using the Triazol method as described above. RNAs are reverse transcribed using Superscript II as suggested by the manufacturer (Life Technology) and PCR amplified for the antigen binding sites contained within the variable light and heavy chains.
PCR reactions using degenerate oligonucleotides are carried out at 94° C. for 30 sec, 52° C. for 1 mm, and 72° C. for 1 min for 35 cycles. Products are analyzed on agarose gels. Products of the expected molecular weights are purified from the gels by Gene Clean (Bio 101), cloned into T-tailed vectors, and sequenced to identify the sequence of the variable light and heavy chains. Once the wild type sequence has been determined, nondegenerate primers are made for RT-PCR amplification of positive clones. Both the light and heavy chains are amplified, gel purified and sequenced using the corresponding sense and antisense primers. The sequencing of RT-PCR products gives representative sequence data of the endogenous immunoglobulin gene and not due to PCR-induced mutations. Sequences from clones are then compared to the wild type sequence.
The methods of the invention yielded an anti-FR-α antibody comprising a heavy chain comprising an amino acid sequence of SEQ ID NO:5 and a light chain comprising an amino acid sequence of SEQ ID NO:2. The molar extinction coefficient (ε) of the antibody was determined to be 43,320 by measurement of the asorbance at 280 nm of 7.41 mg.ml solution of antibody in 20 mM potassium phosphate, 150 mM NaCl at pH 7.2.
A single major band of Mr ̃135 kD was observed upon separation of the antibody in SDS-PAGE under nonreducing conditions. Two bands of Mr ̃55 kD and Mr ̃25 kD were observed upon reduction. Purity was ascertained by densitometric analysis of colloidal Coomassie blue-stained gels and found to be greater than about 99.5% under reducing conditions and greater than about 99% under nonreducing conditions.
Western blot analysis demonstrated that, when used to probe polypeptides separated on a nonreducing gel, the antibody was able to detect a single polypeptide of Mr ̃35 kD in lysates prepared from a cell line known to express FR-α but not in lysates of a cell line that does not express the antigen (1205 Lu). The antibody also was able to detect soluble FR-α secreted from KB cells, even after treatment of the antigen with PNGase F to remove N-linked oligosaccharides.
Kinetic and steady-state binding constants between the antibody of the invention and purified FR-α were determined by surface plasmon resonance spectroscopy. On-rate (ka) was determined to be (2.25±0.02) M−1s−1, and off-rate (kd) was determined to be (5.02±0.08) s−1. A steady state dissociation constant (KD) of 2.23 nM was calculated.
Example 3
Binding of Antibody to Multimeric FR-α
Binding of a monoclonal antibody to the tetrameric form of FR-α was shown by Western blot. Briefly, SK-Ov-3 and IGROV tumor cells were grown in nude mice and excised. Tumor tissues were lysed in RIPA buffer with 15-20 strokes in a 2 ml Dounce tissue homogenizer. Insoluble material was removed by centrifugation and the total protein of the supernate was determined using a BioRad protein Assay. In different experiments, either 5 ug or 20 ug of protein was run on a 4-12% Bis-Tris gel (MES) under non-reducing conditions. The electrophoresed protein was transferred to a PVDF membrane. The membrane was blocked in Blotto (5% milk, 0.05% TBS-T). A 1:100 dilution of culture supernate from LK26 hybridoma cells and total concentration of 0.1% NaN3 was added directly to the Blotto blocking solution as the primary antibody, and the membrane was incubated overnight. The membrane was washed in 0.05% TBS-T and the secondary antibody (horseradish peroxidase labeled goat α-mouse IgG (heavy and light chains)) in Blotto blocking solution was added. The membrane was developed using Super Signal West Pico ECL reagent. The results are shown in FIG. 1 (lane 1, SK-Ov-3; lane 2, IGROV). The results indicate that certain tumors that overexpress FR-α favor the production of multimeric FR-α over monomeric FR-α. This finding can be exploited by monoclonal antibodies that specifically recognize the tetrameric form of FR-α for the destruction of tumor tissue, while leaving normal tissue (which generally expresses the monomeric form of FR-α) unscathed.
Example 4
Expression of FR-α in Escherichia coli 
Expression of FR-α was also assessed in Escherichia coli. Briefly, a plasmid containing the coding sequence for FR-α with a histidine tag (pBAD-His-hFR-α) was transfected into E. coli cells. A culture of E. coli containing plasmid pBAD-His-h FR-α was grown to OD600=1.0. Thereafter, arabinose was added to a final concentration of 0.2%, and samples were taken at the time points indicated in FIG. 2. E. coli lysates were prepared by adding 25 ml of 4× LDS sample buffer to 65 ml culture. JAR cells were propagated in RPMI1640 medium containing 10% FBS, L-glutamine, sodium pyruvate, non-essential amino acids and penicillin/streptomycin. The medium was removed from the cells and RIPA buffer was added directly to the culture plates to lyse the cells for JAR cell extract controls. Samples were separated on a 4-12% NuPAGE gel (MES) and transferred to a PVDF membrane. After overnight blocking in TBST+5% milk, the membrane was probed with 1:1000 dilution of mAb LK26 for 1 hr followed by a 1:10000 dilution of secondary antibody (goat α-mouse Ig conjugated to horseradish peroxidase) for 1 hr. Detection of the antibody was performed with Pierce Super Signal femto after an exposure of 5 minutes. The results are shown in FIG. 2 (lane 1, E. coli+pBAD-His-hFRa, induced 180 min.; lane 2, E. coli+pBAD-His-hFRa, induced 90 min.; lane 3, E. coli+pBAD-His-hFRa, induced 60 min.; lane 4, E. coli+pBAD-His-hFRa, induced 30 min.; lane 5, E. coli+pBAD-His-hFRa, induced 15 min.; lane 6, E. coli+pBAD-His-hFRa, uninduced; lane 7, JAR cell extract).
Example 5
Multimeric Form of FR-α not an Artifact of Sample Preparation
To demonstrate that the multimeric FR-α was not an artifact of aggregation in Triton X-100 micelles as described by Holm et al. (1997) Biosci. Reports 17(4):415-427, extracts of tumors were diluted in either 1× RIPA (1% Triton X-100, 0.1% SDS, 180 mM NaCl, 20 mM potassium phosphate, pH=7.2) or 1× PBS (150 mM NaCl, 20 mM potassium phosphate, pH=7.2). For all samples, 1 ug/ul of stock IGROV extract was used. After dilution, 4× LDS sample buffer was added to each sample to a final concentration of 1×. The samples were loaded on a 4-12% Bis-Tris gel in MES running buffer. Following electrophoresis, the protein was transferred to a PVDF membrane. The membrane containing the transferred protein was blocked for 48 hrs at room temperature in Blotto (5% skim milk, 1× TBS, 0.05% Tween-20). The membrane was developed by incubating the membrane with a primary antibody (1 ug/ml LK26 antibody) followed by washing, then incubation with a secondary antibody (HRP-conjugated goat α-mouse IgG in Blotto). Following another washing step, the membrane was developed using a Super Signal West Pico ECL reagent and exposed for 1 minute. The results are shown in FIG. 3 (lane 1, 1:100 dilution in PBS; lane 2, 1:50 dilution in PBS; lane 3, 1:25 dilution in PBS; lane 4, 1:10 dilution in PBS; lane 5, 1:100 dilution in RIPA; lane 6, 1:25 dilution in RIPA; lane 7, 1:10 dilution in RIPA; M, molecular weight markers, lane 8, 1:1 dilution in RIPA). Arrows indicate monomer (1×) and tetramer (4×). No treatment disrupted the tetrameric form of FR-α. The results indicate that certain tumors that overexpress FR-α express a multimeric form of FR-α that has only been shown previously as artifacts of gel filtration sample preparation.
Example 6
Screening Cells for ADCC Activity
The mAb-producing cells expressing the hPMS-134 will be subcloned by liming dilution and seeded in a flat-bottom 96-well plate. Seeding density will be determined empirically in order to obtain 40 single-cell colonies per plate to approximate monoclonality.
The clones will be allowed to grow for a number of days, which will be empirically determined, after which a sufficient amount of antibody, capable of mediating ADCC activity, is produced. At the end of the incubation period, 50 ul of conditioned medium from each clone/well will be used to assess concentration of antibodies by ELISA, while another 50 ul of conditioned medium from the same well/clone will be utilized in the ADCC assay. Briefly, for example, an anti-ovarian cancer mAb is used in conjunction with the target cells, SKOV3 (passage 1 to 20, obtained from ATCC), which are seeded the day before the assay in a flat-bottom 96-well microplate at a density of 30,000 cell/well in complete growth medium (RPMI-1640 containing 10% FBS, 2 mM L-glutamine). The following day, the complete medium is replaced with 100 ul of CHO-CD serum-free medium and 50 ul of antibody-containing conditioned medium will be added to target cells and incubated for 20 minutes at 37° C. Subsequently, 100 ul of serum-free medium containing 2×105 effector cells are added to each well and cells are incubated for 5-6 hours at 37° C., 5% CO2. Plates are then briefly centrifuged and 100 ul of supernatant is collected from each well and transferred into ELISA plates (Nunc). One hundred ul of LDH substrate (Roche) is added to supernatants and incubated for 10 minutes at ambient temperature. LDH activity will be proportional to the extent of the LDH enzyme released from lysed target cells. Optical density at 490 um (OD490) is obtained spectrophotometrically and percent of cytotoxicity is determined with the formula: (sample OD490−spontaneous OD490)/(max OD490−spontaneous OD490)×100%, where ‘spontaneous’=target cells' lysis in absence of effector cells or antibody, and ‘max’=target cells' lysis in the presence of 2% Triton. Cytotoxicity elicited by 100 ng/ml of a reference antibody (protein A purified, parental antibody) will be used as positive control. Non-specific cytotoxicity will be monitored using 100 mg/ml of normal human IgG1. The ratio obtained by dividing the % cytotoxicity by the concentration of the antibody for each well/clone (i.e., ratio=50(%)/100(ng/ml)=0.5) will be set as the criterion for selecting lead clones. Lead clones will be expanded to 50 ml cultures and antibody will be purified from their conditioned media by protein-A affinity column as described. ADCC activities of the antibodies produced by the lead clones will be compared to the parental antibody using concentrations ranging from 10-1000 ng/ml.
In an alternative ADCC assay, the ability of antibody to produce ADCC was evaluated using SKOV-3, IGROV-1, and 1205 Lu (negative control) as target cells, and PBMCs from normal blood donors. Antibody was tested at a concentration of 10 micrograms/milliliter. Donor PBMCs used as effector cells were thawed and kept overnight in medium (IMDM supplemented with 10% FCS). The cells were resuspended in medium at a concentration of 107 cells/milliliter. The tumor cells used as target cells were detached from the culture flask and 106 cells in 100 microliters FCS were labeled with 100 uCi (3.7 MBq) 51Cr (Amersham, Buckinghamshire, UK) for 2 hours at 37° C. Cells were washed thrice with 5 milliliters medium and resuspended in medium at a concentration of 105 cells/milliliter. Fifty microliters of the tumor cells were seeded in V bottom 96-well plates. Cells were then incubated with 50 microliters medium containing the test antibody or control antibody. After 30 minutes incubation at 37° C., 50 microliters of the PBMCs were seeded in V bottom 96 well plates at various target-effector cell ratios (1:0, 1:25, 1:50, and 1:100) and the plates were further incubated for 18hours at 37° C. The release of 51Cr in the supernatant was determined in a LKB gamma-counter. Each measurement was carried out in triplicate. The percentage of release was defined as:

% release=[(release−spontaneous release)/(maximal release−spontaneous release)]×100.

The percentage of specific release was defined as:

% specific 51Cr release=% total 51Cr release with antibody−% total 51Cr release without antibody.

Results:







TABLE 1







SKOV-3 Percentage of 51Cr release










Patient 1
Patient 2














Without
Control
With
Without
Control
With


T:E ratio
Antibody
IgG
Antibody
antibody
IgG
Antibody





1:0
1.3 ± 0.0
1.6 ± 0.0
 2.0 ± 0.0
−1.4 ± 0.0 
−0.7 ± 0.0 
−0.6 ± 0.0


1:25
5.3 ± 0.3
5.0 ± 0.1
36.1 ± 1.4
2.6 ± 0.0
3.3 ± 0.0
31.2 ± 1.0


1:50
6.8 ± 0.1
5.9 ± 0.1
46.2 ± 1.0
4.5 ± 0.1
6.7 ± 0.1
43.5 ± 1.3


1:100
8.0 ± 0.2
8.3 ± 0.3
61.7 ± 0.2
7.6 ± 0.5
6.3 ± 0.8
56.0 ± 1.0
















TABLE 2







SKOV-3 Percentage of specific 51Cr release










Patient 1
Patient 2











T:E ratio
Control IgG
Antibody
Control IgG
Antibody





1:0
 0.3 ± 0.0
 0.7 ± 0.0
0.7 ± 0.0
 0.8 ± 0.0


1:25
−0.3 ± 0.4
30.8 ± 1.7
0.7 ± 0.1
28.6 ± 1.0


1:50
−0.9 ± 0.2
39.4 ± 1.1
2.2 ± 0.2
39.0 ± 1.4


1:100
 0.3 ± 0.3
53.7 ± 0.3
−1.3 ± 1.2 
48.4 ± 1.5
















TABLE 3







IGROV-I Percentage of 51Cr release










Patient 1
Patient 2














Without
Control
With
Without
Control
With


T:E ratio
Antibody
IgG
Antibody
antibody
IgG
Antibody





1:0
−3.0 ± 0.1
−4.9 ± 0.2
−4.1 ± 0.1
−13.3 ± 0.3 
−12.0 ± 0.5 
−10.9 ± 0.2 


1:25
14.9 ± 3.3
20.0 ± 1.0
70.2 ± 1.3
15.6 ± 2.9
13.4 ± 1.6
46.0 ± 1.2


1:50
15.2 ± 2.2
29.4 ± 2.3
66.8 ± 7.1
23.0 ± 0.6
26.7 ± 0.5
64.7 ± 1.3


1:100
24.0 ± 4.1
33.8 ± 2.7
65.2 ± 1.2
36.8 ± 2.4
41.1 ± 1.6
 67.8 ± 10.5
















TABLE 4







IGROV-I Percentage of specific 51Cr release










Patient 1
Patient 2











T:E ratio
Control IgG
Antibody
Control IgG
Antibody





1:0
−1.9 ± 0.3
−1.1 ± 0.2
1.3 ± 0.7
2.4 ± 0.5


1:25
 5.1 ± 4.3
55.3 ± 4.4
−2.2 ± 4.4 
30.4 ± 4.1 


1:50
14.2 ± 4.5
51.6 ± 9.3
3.7 ± 1.1
41.7 ± 1.9 


1:100
 9.8 ± 6.8
41.2 ± 5.3
4.3 ± 4.0
31.0 ± 12.9









ADCC assays using human ovarian cancer cells as target and peripheral blood mononuclear cells (PBMCs) as effector cells showed that anti-FR-α antibody mediated killing of tumor cell line SKOV-3. IGROV-1 aggregated very quickly and tended to form cell clumps. The cell line was sensitive to killing by PBMCs alone. Control antibody also mediated some killing. Antibody mediated killing of IGROV-1.
Example 7
Immunohistochemistry Assay Using Anti-FR-α Antibody
Tissue preparation. Human tissue samples were obtained at autopsy or biopsy. Tissues tested included adrenal, blood cells (granulocytes, lymphocytes, monocytes, platelets), blood vessels (endothelium), bone marrow, brain (cerebrum (cortex), cerebellum), breast (mammary gland), eye, gastrointestinal tract (colon (large intestine), esophagus, small intestine, stomach), heart, kidney (glomerulus, tubule), liver, lung, lymph node, ovary and fallopian tube (oviduct), pancreas, parathyroid, peripheral nerve, pituitary, placenta, prostate, salivary gland, skin, spinal cord, spleen, striated (skeletal) muscle, testis, thymus, thyroid, tonsil, ureter, urinary bladder, uterus (body (endometrium), cervix), ovarian carcinoma (carcinoma cells), ovarian carcinoma (stromal fibroblasts). Fresh unfixed tissue samples were placed in molds and frozen on dry ice in TISSUE-TEK O.C.T. embedding medium. Tissue samples were sectioned and fixed for 10 minutes in room temperature acetone. Tissues were stored below −70° C. until staining. Just prior to staining, the slides were fixed in 10% neutral buffered formalin.
Antibody preparation. Antibody was applied to tissue samples at two concentrations: 1 microgram/milliliter and 25 micrograms/milliliter.
Assays lacking primary antibody were used as an assay control. Mouse anti-fluorescein was used as secondary antibody. Goat anti-mouse IgG (GAMIgG)-peroxidase polymer was used as tertiary antibody. 3,3′-diaminobenzidinen (DAB) was used as substrate chromogen.
Immunohistochemistry analysis. An indirect immunoperoxidase procedure was performed. Acetone/formalin-fixed cryosections were rinsed twice in phosphate buffered saline (PBS [0.3M NaCl, pH 7.2]). Endogenous peroxidase was blocked by incubating the slides with peroxidase solution of Dako EnVision Kit for 5 minutes followed by two rinses in phosphate buffered saline. Slides were then treated with a protein block (phosphate buffered saline, 0.5% casein, 5% human gamma globulins, and 1 mg/ml heat aggregated HuIgG (prepared by heating a 5 mg/ml solution to 63° C. for 20 minutes and then cooling to room temperature)) designed to reduce nonspecific binding for 20 minutes. Following the protein block, primary antibody (anti-FR-α antibody, negative control antibody (HuIgG1 or MsIgG1), or none) was applied at room temperature for one hour. Unconjugated secondary antibody (mouse anti-fluorescein) was applied for 30 minutes. Slides were twice rinsed with PBS, treated with peroxidase-labeled goat anti-mouse IgG polymer (Dako EnVision kit) for 30 minutes, rinsed twice with PBS, and treated with substrate-chromogen (DAB; Dako EnVision) for 8 minutes. Slides were rinsed in water, counterstained with hematoxylin, dehydrated, and coverslipped.
Results. The anti-FR-α antibody specifically and intensely stained human ovarian carcinoma cells (HT162) at both antibody concentrations as a positive control. Anti-FR-α antibody did not react with ovarian carcinoma (stromal fibroblasts) (negative control). Negative control antibodies HuIgG1 and MsIgG1 did not specifically react with the positive or negative control cells. No reactivity was observed with any tissues when primary antibody was omitted from the staining reaction. See Table 1.
Tissue cross-reactivity of anti-FR-α antibody.







TABLE 5







Cancer-specific expression of target antigen










Tumor tissue
Expression
% positive samples
Total number of


origin
by IHC
of total tested
samples tested (n)













Normal adult
−
0
62


Ovarian
+++++
91
136


carcinoma


cells


Breast
++++
21
53


Renal
++++
50
18


Colorectal
+++
22
27


Lung
+++
33
18


Endometrial
+++
91
11


Brain
+++
80
5


Melanoma
−
0
8


lymphoma
−
0
32





+/− indicates level of expression as detected by immunohistochemistry






The antibodies of the invention do not react with stromal fibroblasts of ovarian carcinoma tissue (data not shown). Similar results for immunohistochemical and tissue distribution analyses were obtained with the antibodies of the invention in cynomolgus monkey and human (data not shown). Positive binding is seen in the cynomolgus monkey kidney cortex (proximal tubules and collecting ducts) and epithelium, tubular (membrane, cytoplasm/cytoplasmic granules), and uctules (membrane, cytoplasm) (data not shown).
In normal human tissues, anti-FR-α antibody specific staining was observed in tubular epithelium (kidney), bronchiolar epithelium (lung); pneumocytes (lung); epithelium of fallopian tube; and duct and ductile epithelium of the pancreas at both antibody concentrations.
In neoplastic human tissues, anti-FR-α antibody specific staining was observed in ovarian carcinoma tissue, endometrial carcinoma tissue, and renal carcinoma tissue. Staining of ovarian and renal carcinoma cells occurred at the membrane and cytoplasm (data not shown).
These results are consistent with distribution of FR-α reported in literature (Weitman, et al., Cancer Res., 61:3869-3876 (2001)).
In summary, FR-α is a glycoprotein whose expression is highly restricted in normal tissues and highly expressed in a large portion of ovarian tumors. Anti-FR-α antibodies of the invention are capable of inducing ADCC, thus making the antibodies of the invention excellent drug candidates for the treatment of a variety of cancers, including ovarian cancer.
Example 8
Receptor Binding Activity
One of the major modes of action of unconjugated therapeutic monoclonal antibodies directed against tumor antigens is through recruitment of immune effector populations to the tumor cells (Clynes R, Takechi Y, Moroi Y, Houghton A, Ravetch J V. Proc. Natl. Acad. Sci. U.S.A. 1998 Jan. 20; 95(2):652-6; Clynes R A, Towers T L, Presta L G, Ravetch J V. Nat. Med. 2000 April; 6(4):443-6). It is presumed that the efficiency with which a given antibody can recruit immune effector cells to a tumor cell is influenced by the affinity of the antibody for its cognate antigen on the tumor cell surface, such that a high affinity antibody will display more efficient recruitment of immune effectors to the tumor cell than a lower affinity counterpart recognizing the same antigen. Limited reports have attempted to demonstrate this relation in vitro (Alsmadi, 0. and Tilley, S A. J. Virol. 1998 January; 72(1):286-293; McCall, A M., Shahied, L., Amoroso, A R., Horak, E M., Simmons, R H., Nielson, U., Adams, G P., Schier, R., Marks, J D., Weiner, L M. J. Immunol. 2001 May 15; 166(10):6112-7, as well as in vivo (Velders, M P, van Rhijn, C M., Oskam, G J., Warnaar, S O. and Litvinov, S V. J. Cancer 1998; 78(4):476-483). In order to determine if such a correlation exists, in vitro ADCC activity of anti-FR-α antibodies and the affinity of these antibodies may be compared for their relevant antigen by surface plasmon resonance spectroscopy.
Surface plasmon resonance spectroscopy relies on the short range ( ̃150 nm) interaction of the electrical field (evanescent wave) generated by photons under conditions of total internal reflection (TIR) with electrons (surface plasmons) in a conductive film at the boundary between two media of differing refractive indices, whereby one of the media is a thin gold layer (conductive film) coated with an alkane linker coupled to CM-dextran. The CM-dextran surface, which forms an extended hydrogel in solution, projecting roughly 100-150 nm into the flowcell, may be derivatized further with a ligand of choice by covalent immobilization to the carboxyl groups present on the CM-dextran layer. The angle necessary to allow the evanescent wave to interact with the gold layer will depend on the angle necessary to observe TIR, which in turn depends on the thickness or mass at the surface of the chip. The instrument thus allows for observation of the change in mass at the surface of the chip over time, as would be observed when an analyte which interacts with the immobilized ligand is injected into the flowcell. If injection of analyte is followed by injection of buffer, one can follow both the association (during injection of the analyte) and dissociation phases (during buffer injection) of the binding. Kinetic on-rates (ka) and off-rates (kd), as well as steady-state equilibrium constants (Ka and Kd) can thus be extrapolated.
The soluble, secreted form of the antigen will be purified from the serum-free culture supernatant of target cells by chromatography through Phenyl Sepharose (high sub), followed by ion exchange on S Sepharose Fast Flow. Briefly, culture supernatant containing secreted antigen will be loaded onto the Phenyl Sepharose (high sub) column in the absence of additional salts. Unbound proteins will be removed by extensive washing in HIC A (20 mM K phosphate pH 7.2), followed by elution of bound antigen using a linear gradient of 0-20 mM CHAPS in HIC buffer. Peak anti-FR-α antibody-containing fractions will be pooled, acidified (pH 5.5) with 1 M citrate, then applied to a S Sepharose cation exchange column. After washing with IEX buffer (20 mM K phosphate, pH 5.5), bound antigen will be eluted using a linear gradient of 0-1 M NaCl in IEX buffer. Peak fractions will be pooled, concentrated using a Centricon centrifugal concentration device (Millipore), and dialyzed against PBS. Based on the purity of the antigen preparation, an additional affinity chromatography step on covalently coupled folate Sepharose resin may be necessary (Sadasivan, E., da Costa, M., Rothenberg, S P. and Brink, L. Biochim. Biophys. Acta 1987; (925):36-47).
The antibody to be assayed will be purified in one step by affinity chromatography on recombinant protein A Sepharose resin (RPA-Sepharose, Amersham Biosciences) Immunoglobulin (Ig) containing tissue culture supernatants will be loaded onto RPA-Sepharose columns by gravity, at an Ig/ml resin value of 10 mg/mL of resin. Unbound proteins will be removed by extensive washing with PBS, followed by elution using 0.1 M glycine-HCl pH 2.6. Fractions will be neutralized with 1 M Tris. Peak fractions will be pooled, and dialyzed against 1000 volumes of PBS. Ig concentration will be determined by BCA protein assay (Pierce Chemical Co.) and Ig-specific ELISA.
Purified antigen will be diluted into coupling buffer (10 mM NaOAc pH 5.0), and immobilized onto the flowcell of a CM5 sensor chip (Biacore) by amine coupling, using a mixture of N-hydroxysuccinimide (NHS) and 1-ethyl-3-[dimethylaminopropyl]carbodiimide hydrochloride (EDC) to activate carboxyl groups in the CM-Dextran hydrogel attached to the surface of the CM5 sensor chip. Activated, underivatized carboxyl groups will be quenched with 1 M ethanolamine A reference flowcell, consisting of the quenched CMDextran surface, activated in the absence of antigen, will be used to normalize all measurements. Crude, mAb-containing culture supernatants, or purified mAb preparations will be injected at flow rates of 30 ul/min for kinetic assays, and 5 ul/mm for steady-state affinity ranking experiments, using HBS-EP (20 mM HEPES-OH, 150 mM NaCl, 3 mM EDTA, 0.005% Surfactant P-20, pH 7.4) as running buffer. Purified mAb preparations will be dialyzed against HBS-EP, using 10K MWCO Slide-A-Lyzer dialysis cassettes (Pierce) prior to their use in Biacore analysis. For samples containing tissue culture supernatant, BSA and soluble CM-Dextran will be added to final concentrations of 1% and 1 mg/ml, respectively. Regeneration of the surface will be accomplished by 30 second injection of 50 mM NaOH, at a flow rate of 100 ul/min. Data analysis will be performed using Bia Evaluation software (Biacore). Kinetic data will be fitted to a simple 1:1 (Langmuir) binding model. For ranking experiments, rank will be determined by KD values obtained from plots of Req versus C at different concentrations of sample.
Example 9
Evaluation of Antibody in Human Tumor Xenograft Model
The SKOV-3 tumor cell line has been shown to express FR-α both on cells in culture and in tumor xenografts. Antibody may be evaluated in vivo using the tumor xenograft model of SKOV-3 cells in mice. Paclitaxel may be used as a positive control. Negative controls may be isotype matched, nonspecific murine IgG and vehicle control. Inhibition of tumor growth by the antibody relative to the negative controls is an indication that the antibody is useful in the treatment of ovarian cancer. The antibody preferably demonstrates tumor growth inhibition of at least about 58%.
Example 10
Growth Inhibition Experiments
The sulforhodamine B (SRB) test (Shekan et al. (1990) J. Nat. Cancer Inst. 82:107-112, as modified by Keepers et al. (1991) Eur. J. Cancer 27:897-900) may be used to test the effect of antibody treatment on the susceptibility of cancer cells to treatment with antifolate compounds. Briefly (as described in Backus et al. (2000) Int. J. Cancer 87:771-778, cells are seeded in 100 ul medium (suitable for use with each particular cell line chosen for testing) in 96-well flat-bottom plates (in triplicate). Seeding density may vary according to the cell type used, but may be, for example, 8,000 cells/well for colon cancer cells,15,000 cells/well for squamous cell carcinoma cells of the head and neck. The cells are cultured in the presence of 1-100 ug/ml anti-folate receptor antibody. After 24 hours, 100 ul of drug containing medium is added and cells are cultured for an additional 72 hours. The concentration of drugs such as 5-fluoro-2′-deoxy-uridine-5′-monophosphate (FdUMP), leucovorin, ZD1649, MTA, GW1843U89, ZD9331, AG337, and PT523 ranges from 1×10−5 to 1×10−11 M. 5-FU is tested in a range of 1×10−4 to 1×10−10 M with or without 10 uM leucovorin. After 72 hrs of exposure to drug(s), the cells are fixed with trichloroacetic acid (TCA) and stained with SRB protein dye. Results are expressed as % of control growth based on the difference in optical density (OD540) at the beginning and end of the drug exposure period according to the formula published by Peters et al. ((1993) Int. J. Cancer 54:450-455):

[(ODtreated/ODstart of exposure)−1/[(ODcontrol/ODstart of exposure)−1]×100%.

IC50 values are calculated based on absorption values defined as drug concentration corresponding to a reduction of cellular growth by 50% when compared with values of untreated control cells.
Example 11
Combination of Antifolate Antibodies and Antifolate Compounds
For combination therapy, efficacy may be demonstrated in vitro using the assay described above for ovarian cancer cell lines and the monoclonal antibodies of the invention. One of skill in the art may extrapolate dosages from the in vitro efficacy assays to determine a range of efficacy in patients. Furthermore, dosages of antibodies accepted in the art for administration can be matched with dosages accepted for various folate inhibitors and adjusted to achieve maximum benefit with the minimum dosage. One of skill in the art is able to adjust these dosages to achieve the desired effect with routine experimentation particularly with the guidance on dosage for antibodies provided above and the assay described for determining an effect in vitro.

## Claims

1. A composition of comprising an antibody that specifically binds folate receptor-alpha, wherein said antibody comprises a heavy chain expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 4 and a light chain expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 1, and wherein said composition is free of a polypeptide consisting of amino acids 20 to 111 of SEQ ID NO: 24.

2. The composition of claim 1 wherein said heavy chain is expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 5.

3. The composition of claim 1 wherein said light chain is expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 2.

4. The composition of claim 1 wherein said heavy chain is expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 5 and said light chain is expressed from a cDNA comprising a nucleotide sequence encoding an amino acid sequence comprising SEQ ID NO: 2.

5. The composition of claim 1 wherein said heavy chain is expressed from a cDNA comprising the nucleotide sequence of SEQ ID NO: 7.

6. The composition of claim 1 wherein said light chain is expressed from a cDNA comprising the nucleotide sequence of SEQ ID NO: 8.

7. The composition of claim 1 comprising a homogeneous population of antibodies.

8. The composition of claim 1 wherein said antibody further comprises a constant region.

9. The composition of claim 1 further comprising a pharmaceutically acceptable carrier.

10. A composition comprising an antibody that specifically binds folate receptor-alpha, wherein said antibody comprises a heavy chain comprising the amino acid sequence of SEQ ID NO: 4 and a light chain comprising the amino acid sequence of SEQ ID NO: 1, and wherein said composition is free of a polypeptide consisting of amino acids 20 to 111 of SEQ ID NO: 24.

11. The composition of claim 10 wherein said heavy chain comprises the amino acid sequence of SEQ ID NO: 5.

12. The composition of claim 10 wherein said light chain comprises the amino acid sequence of SEQ ID NO: 2.

13. The composition of claim 10 wherein said heavy chain comprises the amino acid of SEQ ID NO: 5 and said light chain comprises the amino acid sequence of SEQ ID NO: 2.

14. The composition of claim 10 comprising a homogeneous population of antibodies.

15. The composition of claim 10 wherein said antibody further comprises a constant region.

16. The composition of claim 10 further comprising a pharmaceutically acceptable carrier.