# Patent

## Title
Two novel human cathepsin proteins

## Abstract

This is a continuation of application Ser. No. 08/246,917 filed on May 20, 1994 which is a File Wrapper Continuation application of Ser. No. 07/920,092 filed on Jun. 24, 1992, both now abandoned.

## Background
The present invention relates to immunosuppressive drugs used for suppression of graft rejection in organ transplantation or suppression of autoimmune diseases.

Currently, azathiopline, cyclosporin A, FK-506, and 15-deoxysperguarine are known as immunosuppressive drugs used for a therapeutic purpose, and have potent suppression effect.

However, the conventional immunosuppressive drugs do not induce immunological tolerance and are therefore required that the drug be continuously administered for a long period of time. Side effects such as cancer, nephrotoxicity, angiitis, hepatotoxicity and disorders in the digestive tract have resulted from the continuous administration of these doses.

The present inventors have studied agents of human parasites, especially parasitic helminths, which protect them from the immune response of human hosts, and have found that a cysteine protease, a secretory protein accumulated in the tissue of parasitic helminths, suppresses the cell-mediated and humoral immunities of mammalian hosts and induces the hosts to acquire immunological tolerance to the parasite.

The immunosuppressive drug of the present invention can suppress both delayed-type hypersensitivity and antibody production against specific antigens and graft tissues, and induce immunological tolerance by several administrations. Conventional immunosuppressive drugs are required that they be administered for a long period of time, and cause an adverse effect which is a drawback of the drugs. In contrast, it is not required that the immunosuppressive drug of the present invention it be administered for a long period of time. Therefore, the immunosuppressive drug of the invention overcomes the drawback of conventional immunosuppressive drugs.

FIGS. 1A and 1B show a comparison of the deduced amino acid sequences of a cysteine protease from Paragonimus westermani metacercariae and other similar cysteine proteases. Homologous areas are boxed and heterologous amino acids are underlined.

FIG. 2 is a graph showing a footpad response (swelling of footpad) of C.sub.57 BL/6 female mice. The female mice were intraperitoneally injected with sheep red blood cells (SRBC) at various times after intraperitoneal injection of the present cysteine protease. The intervals were 0(X), 1(.DELTA.), 2(.tangle-solidup.), 3 and 4(.quadrature.), 5 and 6(.box-solid.), 7 and 8 days (.largecircle.) and untreated control (.circle-solid.). Bars represent standard errors.

FIGS. 3A, 3B and 3C are graphs showing a footpad response of C.sub.57 BL/6 female mice to sheep red blood cells (SRBC) and adult Paragonimus westermani antigens. The mice were immunized with SRBC one day after an injection of the present cysteine protease. Group treated with the protease on day-1 (.largecircle.) and control group (.circle-solid.). Bars represent standard errors. (a) The initial SRBC injection one day after the protease treatment. (b) Adult P. westermani antigen injection six months after the initial SRBC immunization. (c) SRBC injection one year after the initial SRBC immunization.

FIGS. 4A, 4B and 4C are graphs showing a footpad response of C.sub.57 BL/6 male mice to adult Paragonimus westermani antigens and sheep red blood cells (SRBC). The mice were immunized with adult Paragonimus westermani antigens one day after injection of the present cysteine protease. Group treated with the protease on day-1 (.quadrature.) and control group (.circle-solid.). Bars represent standard errors. (a) The initial adult P. wetermani antigen injection one day after the protease treatment. (b) SRBC injection six months after the initial adult P. westermani antigen immunization. (c) adult P. westermani antigen injection one year after the initial adult P. westermani antigen immunization.

FIG. 5 is a graph showing a footpad response of C.sub.57 BL female mice to sheep red blood cells (SRBC). The mice were immunized with SRBC one day after injection of various cysteine proteases. Groups treated with plasmin, trypsin, papain, cathepsin B.sub.1 and untreated control (.quadrature.),collagenase (.circle-solid.), and P. westermani cysteine protease (.largecircle.). Bars represent standard errors.

It is an object of the present invention to provide immunosuppressive drugs which, without long continuous administration, suppress both delayed-type hypersensitivity and antibody production against specific antigens and graft tissues and induce immunological tolerance to specific antigens and grafted tissues.

The present invention is characterized by the following description. cysteine protease comprises its composition. which the cysteine protease contains a larger amount of acidic amino acids than basic amino acids. (2) in which the cysteine protease is active in neutral hydrogen ion concentration. or (3) in which the cysteine protease is extracted from the infected larvae of parasitic helminths. (3), or (4) in which the cysteine protease comprises an amino acid sequence described in SEQ ID No. 1. acid sequence described in SEQ ID No. 1. polypeptide having an amino acid sequence described in SEQ ID No. 1. sequence described in SEQ ID No. 2.

The term, "cysteine protease" of the present invention is intended to mean an endopeptidase comprising cysteine residues at amino acid positions, 22, 25, 56, 63, 96, 154, and 202, and a histidine residue at amino acid position 161 (the position is numbered from N terminus in the amino acid sequence) and having an active center at cysteine and histidine residues.

The immunosuppressive drug of the invention comprises cysteine protease directly obtained by extracting the cell and tissue of organisms including invertebrates such as parasitic helminths to vertebrates such as various animals including mammal, or by cultured cells isolated from organisms described above, or by genetic engineering using recombinant DNA containing a cysteine protease gene (recombinant DNA technique), or by chemical synthesis.

When the cysteine protease of the present invention (hereinafter referred to as "present cysteine protease") is injected within a few days and/or several days before an injection of an antigen, the injection of the present cysteine protease suppresses cell-mediated immune response and/or humoral immune response, which is antibody production, against the antigen, for a long period of time. In addition, such a prior injection of the present cysteine protease allow hosts to take a graft for a long period of time and induce the hosts to acquire immunological tolerance to the graft.

Although the detailed mechanism of how cysteine protease works on the immune system is not clearly understood, it is believed that the immunosuppressive drug of the invention administered to a mammalian host is involved with the antigen presentation of immunocytes, receptors or suppressor T cells, thereby suppressing both delayed-type hypersensitivity and antibody production and inducing the immunological tolerance of the mammalian host.

The present invention will be further described in Examples, which are not intended to limit the scope of the invention.

1. Extraction and Purification of Cysteine Protease from Parasitic Helminth

The cysteine protease of the invention was obtained by extracting Paragonimus westermani metacercaria with 50 mM imidazole-HCl/pH7.0, subjecting the extract to centrifugation (at 105,000 g, for 60 minutes), loading the supernatant onto Arginine-Sepharose CL-4B affinity chromatography, filtering the eluate on an Ultrogel AcA-54 gel and purifying the filtrate by DEAE-toyopearl S column chromatography. N-terminal 25 amino acids of the purified native cysteine protease is shown in SEQ ID No. 5.

2. Amino Acid and Base Sequence of Present Cysteine Protease

The purified present cysteine protease was emulsified with Freund's complete adjuvant. The emulsion was intravenously injected in the ears of rabbits for immunization, and antiserum against the present cysteine protease was obtained.

About 2.times.10.sup.4 Paragonimus westermani metacercariae were used to obtain mRNA. Total RNA (about 100 .mu.g) was extracted from the pooled material by phenol extraction and poly A.sup.+ RNA (about 2 .mu.g) was recovered by passing the total RNA through an oligo (dT)-cellulose column. The mRNA thus obtained was used to construct a cDNA library using the .lambda.gt11 vector. The cDNA library was screened by the antiserum and 25 independent positive clones containing about 300-600 bp long insert were obtained. Of 25 clones, two clones having the longest cDNA sequence were designated as .lambda.PW6 and .lambda.PW24. The two clones were subcloned using pUC118, and the two subclones were named pPW6 and pPW24, respectively. Then, the base sequences of the two clones were determined by the dideoxy nucleotide sequencing method using a T7 sequencing kit (United States Biochemicals, U.S.A.).

E. coli MV1184 was transformed with the subclone pPW6 and the transformant, E. coli MV1184/pPW6, was deposited with Fermentation Research Institute, Agency of Industrial Science and Technology and was assigned the accession number FERM BP-3937.

The base sequence and deduced amino acid sequence of pPW6 and pPW24 are shown in SEQ ID Nos. 3 and 4, respectively. Primers were synthesized based on the sequence near the ends of the cDNA insert of the clone and were used to screen the cDNA library again by the PCR.

A base sequence including the entire coding region of the gene of one mature cysteine protease of Paragonimus westermani metacercaria was determined (SEQ ID No. 2). The mRNA sequence contains an open reading frame with a significant length. The deduced amino acid sequence is shown in SEQ ID No. 1. The base sequence of the other several cDNA clones strongly suggested that each protease has a few different amino acids and belongs to a closely related protein family. The mature cysteine protease of the invention was found to contain 215 amino acids.

3. Characterization of Amino Acid Sequence of Present Cysteine Protease

The comparison of the primary structures of the present cysteine protease and the cysteine protease of other species (hereinafter referred to as "similar cysteine proteases") has revealed the following features: an amino acid sequence (boxed region) in FIG. 1 is homologous in both the present cysteine protease and similar cysteine proteases; cysteine residues are found at amino acid positions, 22, 25, 56, 63, 96, 154, and 202, and a histidine residue is found at amino acid position 161, the position that is numbered from N terminus in the amino acid sequence. This primary structure suggests that the present cysteine protease has a typical feature of cysteine protease. However, the underlined amino acid sequence of the present cysteine protease is different from those of all the other similar cysteine proteases.

In addition, the base sequences of other clones have revealed some substitutions of amino acid residues: in the present cysteine protease, there are substitutions, Ala.fwdarw.Pro (amino acid position 15), Ser.fwdarw.Glu (21), Argo.fwdarw.Met (58), Val.fwdarw.Ala (59), Gln.fwdarw.Glu (61), Ala.fwdarw.Ser (69), and Tyr.fwdarw.Asp (77), the position that is numbered from N terminus in the amino acid sequence. This amino acid substitution strongly suggests that the primary structure of the present cysteine protease is at least 90% homologous to the other cysteine protease and that the present cysteine protease has a few different amino acids from other cysteine proteases to form its own family. These findings also coincide with variability found in the serine proteases of nematodes and are believed to be the common feature of parasitic helminths.

Furthermore, there is a difference in the number of amino acid residues between cysteine at amino acid position 56 and the following cysteine: 6 amino acid residues are found in the present cysteine protease, papain, chymopapain and papaya proteinase while 8 amino acid residues are found in cathepsin L and H. Based on the known three-dementional structure of papain, it is believed that the present cysteine protease forms a disulfide bridge at amino acid positions 22-63, 56-96 and 154-202, and its active site residue is cysteine at amino acid position 25 and histidine at 161.

The present cysteine protease is composed of more acidic amino acids(14.89-14.96 mole % acidic amino acid such as glutamic acid and aspartic acid) than basic amino acid (10.17-10.23 mole % basic amino acid such as lysine and arginine). The amino acid composition is similar to that of cathepsin L, but different from those of papain, chymopapain and papaya proteinase, which contains more basic amino acids (13.66-14.29 mole %) than acidic amino acids (7.08-8.37 mole %) (see Table 1). In order that a cysteine protease works well in the neutral or faint acidic environment of the organism, it appears reasonable that the cysteine protease have a high acidic amino acid content. The high acidic amino acid content of the present cysteine protease is believed to be the reason that the present cysteine protease alone has an immunosuppressive effect while other similar cysteine proteases such as papain and the like do not.

The present cysteine protease contains leucine in a large amount (8.10-8.14 mole %) and asparagine and tyrosine in a small amount -3.86 and 5.95-6.58 mole %, respectively), a prominent feature that distinguishes the present cysteine protease from other similar cysteine proteases (Table 1). ______________________________________ Amino acid composition of a cysteine protease and other homologous cysteine proteases Mol % Amino acid CP*     PPA*    CPPA* PP*   CL*   CH* ______________________________________ Glutamic acid 9.09    5.93    3.73  5.44  9.30  5.23 Leucine  8.10    5.29    5.71  4.85  5.17  5.13 Valine   5.96    7.72    6.80  9.09  6.63  6.25 Glycine  6.00    7.70    7.35  8.04  6.63  6.14 Aspartic acid 5.80    2.44    3.35  2.46  6.12  4.26 Alanine  5.83    4.57    4.52  4.61  5.04  6.02 Lysine   6.37    5.36    11.13 7.56  6.72  7.27 Glutamine 5.31    5.35    5.83  6.48  4.13  5.19 Threonine 4.76    3.05    6.05  3.96  3.37  4.23 Tryptophan 5.19    3.74    2.96  3.02  3.61  3.63 Asparagine 3.36    5.81    5.27  6.83  5.14  5.64 Serine   5.35    5.01    6.48  6.99  7.06  4.86 Cysteine 3.52    3.11    3.51  2.69  3.00  3.45 Methionine 2.17    0.00    0.54  0.00  3.16  3.71 Tyrosine 6.58    12.61   9.86  8.70  8.33  9.65 Arginine 3.80    8.30    3.16  6.44  3.69  1.86 Proline  3.35    4.22    4.59  3.40  3.66  4.91 Phenylalanine 3.00    2.42    3.59  1.83  4.67  5.87 Isoleucine 4.77    6.25    3.80  5.33  2.78  5.60 Histidine 1.69    1.14    1.68  2.29  1.64  1.10 ______________________________________ *CP: Cysteine protease, PPA: Papain, CPPA: Chymopapain, PP: Papaya proteinase, CL: Cathepsin L, CH: Cathepsin H

4 Suppressive Effects of Present Cysteine Protease on Cell-mediated Immune Response and Humoral Immune Response.

12-week old C57BL/6 female mice were divided into 10 groups, each group having 6 mice. The present cysteine protease was intraperitoneally administered (100 ng protein per mouse which is an enough concentration to suppress footpad reaction) to the mice, except for a control group, 1, 2, 3, 4, 5, 7, and 8 days before the administration of antigens and on the same day when antigens were administered. The mice were immunized with the intraperitoneal injection of 1.times.10.sup.8 sheep red blood cells (SRBC) suspended in 0.1 ml of phosphate buffed saline (PBS) as an initial antigen. Five days later, 5.times.10.sup.7 SRBCs suspended in 0.05 ml PBS as booster was injected to the footpad. Then, degree of swelling (thickness) was measured (Experimental schedule 1 shown in Table 2). __________________________________________________________________________ Experimental schedule 1 __________________________________________________________________________ ##STR1## __________________________________________________________________________

Compared with control, footpad reaction (swelling) was significantly suppressed in the group (P<0.01) to which present cysteine protease was administered one day before immunization. This result suggests that administration of the present cysteine prolease suppresses delayed-type hypersensitivity, against SRBC (FIG. 2).

Each group of mice was tested for the antibody titer (HA) of blood serum using SRBC. Compared with control, antibody production was significantly suppressed in the group of mice to which the present cysteine protease was administered 4-5 days before the injection of the antigen (Table 3). ______________________________________ Antibody production in serum of C.sub.57 BL/6 female mice injected intraperitoneally with SRBC immunization at various days after treatment of cysteine protease Anti-SRBC (HA) titer (Log.sub.2) Day of CP   on 15 days after immunization treatment   Mean .+-. SE ______________________________________ Day 0       6.0 .+-. 0.26 Day-1       5.5 .+-. 0.22 Day-2       5.0 .+-. 0.31 Day-3       4.2 .+-. 0.31 Day-4       3.0 .+-. 0.31 Day-5       2.2 .+-. 0.17 Day-6       3.3 .+-. 0.37 Day-7       4.5 .+-. 0.22 Day-8       5.0 .+-. 0.30 Control     5.5 .+-. 0.34 ______________________________________ CP (Cysteine protease) and SE (Standard error)

5 Immunological Tolerance Induced by Present Cysteine Protease

The present protease (100 ng protein per mouse) was intraperitoneally administered to 12-week old B57BL/6 female and male mice. One day later, a group was immunized with SRBC or adult Paragonimus westermani antigens (Experimental schedule 2 shown in Table 4). The group demonstrated the suppression of a footpad reaction against SRBC or adult Paragonimus westermani antigens even one year after the initial immunization (FIGS. 3 and 4). In these groups, the immunosuppression was specifically occurred to the antigen that was initially injected before one year while no immunosuppression of a footpad reaction was occurred to other antigens (FIGS. 3 and 4). __________________________________________________________________________ Experimental schedule 2 __________________________________________________________________________ ##STR2## ##STR3## __________________________________________________________________________

As is shown in Experimental schedule 3 in Table 5, when the skin of 8-week old, AKR female mice was implanted to 10-week old, C3H/He female mice to which the present cysteine protease (total amount, 1.5 .mu.g protein) had been administered one and 4 days before implantation, the administered group took the graft for a significantly longer period of time (P<0.05-0.01; mean survival time: 100.+-.36) than control (mean survival time: 18.+-.0.5 days) (Table 6). ______________________________________ Experimental schedule 3 ______________________________________ ##STR4## ______________________________________ __________________________________________________________________________ Effects of CP treatment on the survival of skin allografts CP dose schedule Skin allograft            No. of Donor of  (.mu.g/Kg) survival time (days)  P value hair P value Recipient skin grafts Day-4 Day-1 in individual mice MST(day) .+-. SE (t-test) growth (x.sup.2 -test) __________________________________________________________________________ C.sub.3 H/He .female. ARK .female. --  --  17,17,18,18,19,20 18 .+-. 0.5 <0.05 0   <0.01 30  15  20 > 30 > 60 > 90 > 150 > 250 100 .+-. 36 5 __________________________________________________________________________ The abbreviations are mean survival time (MST), standard error (SE) and cysteine protease (CP)

As is evident from the results, the present cysteine protease intraperitoneally administered to mice was found to induce immunological tolerance to the antigen or the tissue which were injected or implanted immediately after the administration of the present cysteine protease.

6. Immunological Tolerance of Other Protease Species

Most of the different proteases (e.g., 100 ng of Plasmin, Trypsin, Cathepsin B1, Papain, or Collagenase per mouse) intraperitoneally administered to 12-week old, C57BL/6 female mice did not induce immunological tolerance (FIG. 5). Weak suppression of a footpad reaction was observed in the collagenase administered group but no immunosuppression was observed one year later.

As is evident from the above experiment, the administration of the present cysteine protease suppresses delayed-type hypersensitivity and antibody production against specific antigens and implants, and induces immunological tolerance in the mice.

Pharmaceutical agents utilizing the immunosuppressive effects of the present cysteine protease for therapeutic purpose may be in various forms including an injectable solution described in Example, inhalant, ointment, or a lyophilized form. Dosage may depend on how the present cysteine protease is administered and what therapeutic purpose one is in need.

Although the present cysteine protease used in Example is one that is directly extracted from parasitic helminths, an amount of the cysteine protease that is extracted from one parasitic helminth is a very small. For the isolation and purification of the cysteine protease, it not only takes long time but is also costly so that it is desirable for a commercial scale of the preparation of the cysteine protease to produce it in a large amount by cultured animal cells or by genetic engineering using recombinant DNA containing a gene of interest (recombinant DNA technology). SEQUENCE LISTING (1) GENERAL INFORMATION: (iii) NUMBER OF SEQUENCES: 5 (2) INFORMATION FOR SEQ ID NO:1: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 215 (B) TYPE:amino acid (C) STRANDEDNESS: (D) TOPOLOGY:Linear (ii) MOLECULE TYPE:peptide (vi) ORIGINAL SOURCE: (A) ORGANISM:Paragonimus westermani metacecaria (B) CELL TYPE: (C) CELL LINE: (ix) FEATURE: (A) LOCATION: 5 (B) NAME/KEY: Xaa:Met or Ile (ix) FEATURE: (A) LOCATION:15 (B) NAME/KEY:Xaa:Ala or Pro (ix) FEATURE: (A) LOCATION:21 (B) NAME/KEY:Xaa:Ser or Glu (ix) FEATURE: (A) LOCATION:58 (B) NAME/KEY:Xaa:Arg or Met (ix) FEATURE: (A) LOCATION:59 (B) NAME/KEY:Xaa:Val or Ala (ix) FEATURE: (A) LOCATION:61 (B) NAME/KEY:Xaa:Gln or Glu (ix) FEATURE: (A) LOCATION:69 (B) NAME/KEY:Xaa:Ala or Ser (ix) FEATURE: (A) LOCATION:77 (B) NAME/KEY:Xaa:Tyr or Asp (xi) SEQUENCE DESCRIPTION:SEQ ID NO:1: AlaProGluArgXaaAspTrpArgAlaLys 510 GlyAlaValThrXaaValGluAsnGlnGly 1520 XaaCysGlySerCysTrpAlaPheSerThr 2530 AlaGlyAsnValGluGlyGlnTrpPheIle 3540 LysThrGlyGlnLeuValSerLeuSerLys 4550 GlnGlnLeuValAspCysAspXaaXaaAla 5560 XaaGlyCysAsnGlyGlyTrpProXaaSer 6570 SerTyrLeuGluIleMetXaaMetGlyGly 7580 LeuGluSerGluSerAspTyrProTyrVal 8590 GlyValGluGlnThrCysAlaLeuAsnLys 95100 GluLysLeuValAlaLysIleAspAspSer 105110 IleValLeuGlyProGluGluGluAspHis 115120 AlaAlaTyrLeuAlaGluHisGlyProLeu 125130 SerThrLeuLeuAsnAlaValAlaLeuGln 135140 TyrTyrGlnSerGlyValLeuLysProThr 145150 PheGluGluCysProAspThrGluLeuAsn 155160 HisAlaValLeuThrValGlyTyrAspLys 165170 GluGlyAspMetProTyrTrpIleIleLys 175180 AsnSerTrpGlyThrAspTrpGlyGluLys 185190 GlyTyrPheArgLeuPheArgGlyAspCys 195200 ThrCysGlyIleAsnArgMetAlaThrSer 205210 AlaIleIleLysLys 215 (2) INFORMATION FOR SEQ ID NO:2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 648 (B) TYPE:nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE:cDNA to mRNA (vi) ORIGINAL SOURCE: (A) ORGANISM:Paragonimus westermani metacecaria (B) CELL TYPE: (C) CELL LINE: (ix) FEATURE: (ix) FEATURE: (A) LOCATION:15 (B) NAME/KEY:N:T or G (ix) FEATURE: (A) LOCATION:43 (B) NAME/KEY:N:G or C (ix) FEATURE: (A) LOCATION:48 (B) NAME/KEY:N:T or G (ix) FEATURE: (A) LOCATION:61 (B) NAME/KEY:N:T or G (ix) FEATURE: (A) LOCATION:62 (B) NAME/KEY:N:C or A (ix) FEATURE: (A) LOCATION:66 (B) NAME/KEY:N:C or T (ix) FEATURE: (A) LOCATION:123 (B) NAME/KEY:N:A or G (ix) FEATURE: (A) LOCATION:173 (B) NAME/KEY:N:G or T (ix) FEATURE: (A) LOCATION:176 (B) NAME/KEY:N:T or C (ix) FEATURE: (A) LOCATION:181 (B) NAME/KEY:N:C or G (ix) FEATURE: (A) LOCATION:205 (B) NAME/KEY:N:G or T (ix) FEATURE: (A) LOCATION:213 (B) NAME/KEY:N:C or A (ix) FEATURE: (A) LOCATION:229 (B) NAME/KEY:N:T or G (ix) FEATURE: (A) LOCATION:237 (B) NAME/KEY:N:C or T (ix) FEATURE: (A) LOCATION:306 (B) NAME/KEY:N:G or A (ix) FEATURE: (A) LOCATION:366 (B) NAME/KEY:N:C or T (ix) FEATURE: (A) LOCATION:370 (B) NAME/KEY:N:T or C (ix) FEATURE: (A) LOCATION:375 (B) NAME/KEY:N:A or T (ix) FEATURE: (A) LOCATION:471 (B) NAME/KEY:N:T or C (ix) FEATURE: (A) LOCATION:489 (B) NAME/KEY:N:T or G (xi) SEQUENCE DESCRIPTION:SEQ ID NO:2: GCTCCCGAACGTATNGACTGGCGGGCTAAG30 GGCGCTGTGACANCGGTNGAAAATCAAGGC60 NNGTGNGGTTCGTGTTGGGCGTTCTCGACT90 GCCGGAAACGTTGAAGGTCAATGGTTCATC120 AANACCGGTCAGCTTGTCAGTCTGAGCAAA150 CAGCAATTGGTCGACTGTGACANGGNGGCC180 NAGGGATGCAATGGTGGATGGCCANCCAGT210 TCNTACCTGGAAATCATGNATATGGGNGGT240 TTGGAGTCCGAAAGCGACTATCCCTATGTT270 GGTGTGGAACAAACGTGTGCCCTGAACAAG300 GAGAANCTGGTAGCCAAAATCGATGATTCG330 ATTGTTCTGGGTCCGGAGGAGGAGGACCAC360 GCCGCNTATNTGGCNGAACACGGACCGTTG390 AGTACGCTGCTCAATGCCGTCGCTCTTCAG420 TACTACCAGTCCGGAGTACTCAAACCGACC450 TTTGAGGAGTGTCCGGATACNGAGTTGAAC480 CACGCGGTNCTCACCGTCGGCTATGACAAG510 GAAGGCGATATGCCATACTGGATCATCAAG540 AATAGTTGGGGTACCGACTGGGGCGAGAAA570 GGCTACTTCCGACTCTTCCGAGGAGATTGC600 ACGTGTGGAATCAACCGCATGGCAACATCC630 GCGATCATCAAGAAATGA648 (2) INFORMATION FOR SEQ ID NO:3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 648 (B) TYPE:nucleic acid (C) STRANDEDNESS:single (D) TOPOLOGY: linear (ii) MOLECULE TYPE:cDNA to mRNA (vi) ORIGINAL SOURCE: (A) ORGANISM:Paragonimus westermani metacecaria (B) CELL TYPE: (C) CELL LINE: (ix) FEATURE: (xi) SEQUENCE DESCRIPTION:SEQ ID NO:3: GCTCCCGAACGTATTGACTGGCGGGCTAAG30 AlaProGluArgIleAspTrpArgAlaLys 510 GGCGCTGTGACAGCGGTTGAAAATCAAGGC60 GlyAlaValThrAlaValGluAsnGlnGly 1520 TCGTGCGGTTCGTGTTGGGCGTTCTCGACT90 SerCysGlySerCysTrpAlaPheSerThr 2530 GCCGGAAACGTTGAAGGTCAATGGTTCATC120 AlaGlyAsnValGluGlyGlnTrpPheIle 3540 AAAACCGGTCAGCTTGTCAGTCTGAGCAAA150 LysThrGlyGlnLeuValSerLeuSerLys 4550 CAGCAATTGGTCGACTGTGACAGGGTGGCC180 GlnGlnLeuValAspCysAspArgValAla 5560 CAGGGATGCAATGGTGGATGGCCAGCCAGT210 GlnGlyCysAsnGlyGlyTrpProAlaSer 6570 TCCTACCTGGAAATCATGTATATGGGCGGT240 SerTyrLeuGluIleMetTyrMetGlyGly 7580 TTGGAGTCCGAAAGCGACTATCCCTATGTT270 LeuGluSerGluSerAspTyrProTyrVal 8590 GGTGTGGAACAAACGTGTGCCCTGAACAAG300 GlyValGluGlnThrCysAlaLeuAsnLys 95100 GAGAAGCTGGTAGCCAAAATCGATGATTCG330 GluLysLeuValAlaLysIleAspAspSer 105110 ATTGTTCTGGGTCCGGAGGAGGAGGACCAC360 IleValLeuGlyProGluGluGluAspHis 115120 GCCGCCTATTTGGCAGAACACGGACCGTTG390 AlaAlaTyrLeuAlaGluHisGlyProLeu 125130 AGTACGCTGCTCAATGCCGTCGCTCTTCAG420 SerThrLeuLeuAsnAlaValAlaLeuGln 135140 TACTACCAGTCCGGAGTACTCAAACCGACC450 TyrTyrGlnSerGlyValLeuLysProThr 145150 TTTGAGGAGTGTCCGGATACTGAGTTGAAC480 PheGluGluCysProAspThrGluLeuAsn 155160 CACGCGGTTCTCACCGTCGGCTATGACAAG510 HisAlaValLeuThrValGlyTyrAspLys 165170 GAAGGCGATATGCCATACTGGATCATCAAG540 GluGlyAspMetProTyrTrpIleIleLys 175180 AATAGTTGGGGTACCGACTGGGGCGAGAAA570 AsnSerTrpGlyThrAspTrpGlyGluLys 185190 GGCTACTTCCGACTCTTCCGAGGAGATTGC600 GlyTyrPheArgLeuPheArgGlyAspCys 195200 ACGTGTGGAATCAACCGCATGGCAACATCC630 ThrCysGlyIleAsnArgMetAlaThrSer 205210 GCGATCATCAAGAAATGA648 AlaIleIleLysLys*** 215 (2) INFORMATION FOR SEQ ID NO:4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 648 (B) TYPE:nucleic acid (C) STRANDEDNESS:single (D) TOPOLOGY:linear (ii) MOLECULE TYPE:cDNA to mRNA (vi) ORIGINAL SOURCE: (A) ORGANISM:Paragonimus westermani metacecaria (B) CELL TYPE: (C) CELL LINE: (ix) FEATURE: (xi) SEQUENCE DESCRIPTION:SEQ ID NO:4: GCTCCCGAACGTATGGACTGGCGGGCTAAG30 AlaProGluArgMetAspTrpArgAlaLys 510 GGCGCTGTGACACCGGTGGAAAATCAAGGC60 GlyAlaValThrProValGluAsnGlnGly 1520 GAGTGTGGTTCGTGTTGGGCGTTCTCGACT90 GluCysGlySerCysTrpAlaPheSerThr 2530 GCCGGAAACGTTGAAGGTCAATGGTTCATC120 AlaGlyAsnValGluGlyGlnTrpPheIle 3540 AAGACCGGTCAGCTTGTCAGTCTGAGCAAA150 LysThrGlyGlnLeuValSerLeuSerLys 4550 CAGCAATTGGTCGACTGTGACATGGCGGCC180 GlnGlnLeuValAspCysAspMetAlaAla 5560 GAGGGATGCAATGGTGGATGGCCATCCAGT210 GluGlyCysAsnGlyGlyTrpProSerSer 6570 TCATACCTGGAAATCATGGATATGGGTGGT240 SerTyrLeuGluIleMetAspMetGlyGly 7580 TTGGAGTCCGAAAGCGACTATCCCTATGTT270 LeuGluSerGluSerAspTyrProTyrVal 8590 GGTGTGGAACAAACGTGTGCCCTGAACAAG300 GlyValGluGlnThrCysAlaLeuAsnLys 95100 GAGAAACTGGTAGCCAAAATCGATGATTCG330 GluLysLeuValAlaLysIleAspAspSer 105110 ATTGTTCTGGGTCCGGAGGAGGAGGACCAC360 IleValLeuGlyProGluGluGluAspHis 115120 GCCGCTTATCTGGCTGAACACGGACCGTTG390 AlaAlaTyrLeuAlaGluHisGlyProLeu 125130 AGTACGCTGCTCAATGCCGTCGCTCTTCAG420 SerThrLeuLeuAsnAlaValAlaLeuGln 135140 TACTACCAGTCCGGAGTACTCAAACCGACC450 TyrTyrGlnSerGlyValLeuLysProThr 145150 TTTGAGGAGTGTCCGGATACCGAGTTGAAC480 PheGluGluCysProAspThrGluLeuAsn 155160 CACGCGGTGCTCACCGTCGGCTATGACAAG510 HisAlaValLeuThrValGlyTyrAspLys 165170 GAAGGCGATATGCCATACTGGATCATCAAG540 GluGlyAspMetProTyrTrpIleIleLys 175180 AATAGTTGGGGTACCGACTGGGGCGAGAAA570 AsnSerTrpGlyThrAspTrpGlyGluLys 185190 GGCTACTTCCGACTCTTCCGAGGAGATTGC600 GlyTyrPheArgLeuPheArgGlyAspCys 195200 ACGTGTGGAATCAACCGCATGGCAACATCC630 ThrCysGlyIleAsnArgMetAlaThrSer 205210 GCGATCATCAAGAAATGA648 AlaIleIleLysLys*** 215 (2) INFORMATION FOR SEQ ID NO:5: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 25 (B) TYPE:amino acid (C) STRANDEDNESS: (D) TOPOLOGY:linear (ii) MOLECULE TYPE:peptide (vi) ORIGINAL SOURCE: (A) ORGANISM:Paragonimus westermani metacecaria (B) CELL TYPE: (C) CELL LINE: (ix) FEATURE: (A) OTHER INFORMATION: The 22nd and 25th residues, Xaa, are to be cysteine which could not be detected with this PTH analyser system. The amino acid sequence shown below is N-terminal 25 amino acids of the purified native cysteine protease. (xi) SEQUENCE DESCRIPTION:SEQ ID NO:5: AlaProGluSerIleAspTrpArgGluLys 510 GlyAlaValAlaProValGluAspGlnGly 1520 SerXaaGlySerXaa 25 __________________________________________________________________________

## Claims

1. A composition comprising a biologically active cysteine protease derived from parasitic helminths wherein the amino acid sequence is at least 90% identical to the amino acid sequence of SEQ ID No. 1.

2. The composition of claim 1 wherein the cysteine protease has an amino acid sequence in which the total number of acidic amino acid residues in the sequence exceeds the total number of basic amino acid residues in the sequence.

3. The composition of claim 1 wherein the cysteine protease is active at about pH 7.

4. The composition of claim 2 wherein the cysteine protease is active at about pH 7.

5. The composition of claim 2 wherein the cysteine protease has the amino acid sequence of SEQ ID No. 1.

6. The composition of claim 3 wherein the cysteine protease has the amino acid sequence of SEQ ID No. 1.

7. The composition of claim 4 wherein the cysteine protease has the amino acid sequence of SEQ ID No. 1.

8. A composition comprising a biologically active cysteine protease derived from parasitic helminths wherein the amino acid sequence is at least 90% identical to the amino acid sequence of SEQ ID No. 1 and wherein the amino acid sequence of the cysteine protease has a proline residue at position 15, a glutamate residue at positions 21 and 61, a cysteine residue at positions 22, 25, 56, 63, 96, 154 and 202, a methionine residue at position 58, an alanine residue at position 59, a serine residue at position 69, an aspartate residue at position 77 and a histidine residue at position 161, wherein the amino acid residue positions are relative to the N terminus.

9. The composition of claim 8 wherein the cysteine protease has an amino acid sequence in which the total number of acidic amino acid residues in the sequence exceeds the total number of basic amino acid residues in the sequence.

10. The composition of claim 8 wherein the cysteine protease is active at about pH 7.

11. The composition of claim 8 wherein the cysteine protease is from infected larvae of parasitic helminths.

12. A composition comprising a cysteine protease with an amino acid sequence of SEQ ID number 1.

13. A composition comprising a biologically active cysteine protease derived from parasitic helminths wherein the amino acid sequence is at least 90% identical to the amino acid sequence of SEQ ID No. 1 and wherein the amino acid sequence of the cysteine protease has a proline residue at position 15, a glutamate residue at positions 21 and 61, a cysteine residue at positions 22, 25, 56, 63, 96, 154 and 202, a methionine residue at position 58, an alanine residue at position 59, a serine residue at position 69, an aspartate residue at position 77 and a histidine residue at position 161, wherein the amino acid residue positions are relative to the N terminus wherein the cyateine protease has an amino acid sequence in which the total number of acidic amino acid residues in the sequence exceeds the total number of basic amino acid residues in the sequence wherein the cysteine protease is active at about pH 7.