# Patent

## Title
Compounds and compositions for the treatment of parasitic diseases

## Abstract

The present invention provides compounds of formula I:




or a pharmaceutically acceptable salt, tautomer, or stereoisomer, thereof, wherein the variables are as defined herein. The present invention further provides pharmaceutical compositions comprising such compounds and methods of using such compounds for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a disease caused by a parasite, such as Leishmaniasis, Human African Trypanosomiasis and Chagas disease.

## Background
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the benefit of priority to U.S. Provisional Patent Application No. 61/789,470, filed 15 Mar. 2013. The full disclosure of said application is incorporated herein by reference in its entirety and for all purposes.


BACKGROUND OF THE INVENTION
1. Field of the Invention
The invention provides a class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent Leishmaniasis.
2. Background
Leishmaniasis is a disease caused by protozoan parasites that belong to the genus Leishmania and is transmitted by the bite of certain species of sand fly.
Leishmaniasis is mostly a disease of the developing world, and is rarely known in the developed world outside a small number of cases, mostly in instances where troops are stationed away from their home countries. Leishmaniasis can be transmitted in many tropical and subtropical countries, and is found in parts of about 88 countries. Approximately 350 million people live in these areas. The settings in which leishmaniasis is found range from rainforests in Central and South America to deserts in West Asia and the Middle East. It affects as many as 12 million people worldwide, with 1.5-2 million new cases each year. The visceral form of leishmaniasis has an estimated incidence of 500,000 new cases and 60,000 deaths each year. More than 90 percent of the world's cases of visceral leishmaniasis are in India, Bangladesh, Nepal, Sudan, and Brazil. Kabul is estimated as the largest center of cutaneous leishmaniasis in the world, with approximately 67,500 cases as of 2004.
There are four main forms of Leishmaniasis. Cutaneous leishmaniasis is the most common form of leishmaniasis. Visceral leishmaniasis, also called kala-azar, is the most serious form in which the parasites migrate to the vital organs. Visceral leishmaniasis is caused by the parasite Leishmania donovani, and is potentially fatal if untreated.
Currently, no vaccines are in routine use.
The two main therapies for visceral leishmaniasis are the antimony derivatives sodium stibogluconate (Pentostam®) and meglumine antimoniate (Glucantim®). Sodium stibogluconate has been used for about 70 years and resistance to this drug is a growing problem. In addition, the treatment is relatively long and painful, and can cause undesirable side effects. Amphotericin (AmBisome) is now the treatment of choice. Miltefosine (Impavido), and paromomycin are the other treatment alternatives. These drugs are known to produce a definitive cure in >90% of patients. Amphotericin (AmBisome) is expansive and has to be given intravenously; it is not affordable to most patients affected. Paromomycin, although affordable, requires intramuscular injections for 3 weeks; compliance is a major issue. Miltefosine is an oral drug and has shown to be more effective and better tolerated than other drugs. However, there are problems associated with the use of miltefosine that arise from its teratogenicity and pharmacokinetics. Miltefosine was shown to be much slower eliminated from the body and was still detectable five months after the end of treatment. The presence of subtherapeutic miltefosine concentrations in the blood beyond five months after treatment might contribute to the selection of resistant parasites and, moreover, the measures for preventing the teratogenic risks of miltefosine must be reconsidered. This led to some reluctance to taking Miltefosine by affected populations.
The Drugs for Neglected Diseases Initiative is actively facilitating the search for novel therapeutics. Our invention meets that needs.
Human African trypanosomiasis (HAT), also known as African sleeping sickness, is a vector-borne parasitic disease caused by the protozoa Trypanosoma brucei. There are two subspecies that infect humans, T.b. gambiense and T.b. rhodesiense, with the former accounting for over 95% of reported cases and the latter accounting for the remaining reported cases. The parasites are transmitted to humans by tsetse fly (Glossina genus) bites which have acquired their infection from human beings or from animals harboring the human pathogenic parasites.
The disease has been recorded as occurring in 36 countries, all in subtropical and equatorial Africa. It is endemic in southeast Uganda and western Kenya. In 1995, the WHO estimated that 300,000 people were afflicted with the disease. In its 2001 report, the WHO set the figure of people at risk of infection at 60 million, of which only 4 to 5 million had access to any kind of medical monitoring. In 2006, the WHO estimated that about 70,000 people could have the disease, and many cases are believed to go unreported. About 48,000 people died of sleeping sickness in 2008. Public health efforts in prevention and the eradication of the tsetse fly population have proven to be successful in controlling the spread of the disease; under 10,000 new cases were reported in 2009 according to WHO figures, which represents a huge decrease from the estimated 300,000 new cases in 1998.
African trypanosomiasis symptoms occur in two stages. In the first stage, known as the haemolymphatic phase, the trypanosomes multiply in subcutaneous tissues, blood and lymph. The haemolymphatic phase is characterized by bouts of fever, headaches, joint pains and itching. In the second stage, the neurological phase, the parasites cross the blood-brain barrier to infect the central nervous system. It is in this stage when more obvious signs and symptoms of the disease appear: changes of behaviour, confusion, sensory disturbances and poor coordination. Disturbance of the sleep cycle, which gives the disease its name, is an important feature of the second stage of the disease. Without treatment, the disease is invariably fatal, with progressive mental deterioration leading to coma, systemic organ failure, and death.
Four drugs are registered for the treatment of sleeping sickness. The protocol depends on the stage of the disease. The current standard treatment for first-stage disease is intravenous or intramuscular pentamidine (for T.b. gambiense), or intravenous suramin (for T.b. rhodesiense). The current standard treatment for second-stage disease is: Intravenous melarsoprol, or interavenous melarsoprol in combination with oral nifurtimox, intravenous eflornithine only or eflornithine in combination with nifurtimox. All of the drugs have undesirable or sometime serious side effects. For example, 3-10% of patients those injected with Melarsoprol (Arsobal), an organoarsenical, developed reactive encephalopathy (convulsions, progressive coma, or psychotic reactions), and 10-70% of such cases result in death.
Chagas disease, also called American trypanosomiasis, is a tropical parasitic disease caused by the flagellate protozoan Trypanosoma cruzi. T. cruzi is commonly transmitted to humans and other mammals by the blood-sucking “kissing bugs” of the subfamily Triatominae (family Reduviidae).
Chagas disease is contracted primarily in the Americas. It is endemic in twenty one Central and Latin American countries; particularly in poor, rural areas of Mexico, Central America, and South America. Large-scale population movements from rural to urban areas of Latin America and to other regions of the world have increased the geographic distribution of Chagas disease, and cases have been noted in many countries, particularly in Europe. Although there are triatomine bugs in the U.S., only very rarely vectorborne cases of Chagas disease have been documented.
Each year, an estimated 10 to 15 million people across the world are infected with Chagas disease, most of whom do not know they are infected. Every year, 14,000 people die as a consequence of the disease. In Central and South America, Chagas kills more people than any other parasite-borne disease, including malaria. By applying published seroprevalence figures to immigrant populations, CDC estimates that more than 300,000 persons with Trypanosoma cruzi infection live in the United States. Most people with Chagas disease in the United States acquired their infections in endemic countries.
Chagas disease has an acute and a chronic phase. If untreated, infection is lifelong. Acute Chagas disease occurs immediately after infection, may last up to a few weeks or months, and parasites may be found in the circulating blood. Infection may be mild or asymptomatic. There may be fever or swelling around the site of inoculation (where the parasite entered into the skin or mucous membrane). Rarely, acute infection may result in severe inflammation of the heart muscle or the brain and lining around the brain. The initial acute phase is responsive to antiparasitic treatments, with 60-90% cure rates. Following the acute phase, most infected people enter into a prolonged asymptomatic form of disease (called “chronic indeterminate”) during which few or no parasites are found in the blood. During this time, most people are unaware of their infection. Many people may remain asymptomatic for life and never develop Chagas-related symptoms.
However, an estimated 20-30% of infected people will develop debilitating and sometimes life-threatening medical problems over the course of their lives.
The symptoms of Chagas disease vary over the course of an infection. In the early, acute stage, symptoms are mild and usually produce no more than local swelling at the site of infection. The initial acute phase is responsive to antiparasitic treatments, with 60-90% cure rates. After 4-8 weeks, individuals with active infections enter the chronic phase of Chagas disease that is asymptomatic for 60-80% of chronically infected individuals through their lifetime.
There is no vaccine against Chagas disease. Treatment for Chagas disease focuses on killing the parasite and managing signs and symptoms.
During the acute phase of Chagas disease, the drugs currently available for treatment are benznidazole and nifurtimox. Once Chagas disease reaches the chronic phase, medications aren't effective for curing the disease. Instead, treatment depends on the specific signs and symptoms. However, problems with these current therapies include their diverse side effects, the length of treatment, and the requirement for medical supervision during treatment. Resistance to the two frontline drugs has already occurred. The antifungal agent Amphotericin b has been proposed as a second-line drug, but this drug is costly and relatively toxic.
In view of the foregoing, it is desirable to develop novel compounds as antiparasitic agents.
SUMMARY OF THE INVENTION
The invention therefore provides a compound of the formula (I):




or a pharmaceutically acceptable salt, or stereoisomer thereof; wherein

    
    
        L1 is —C(O)— or —S(O)2—;
        R1 is selected from nitro, C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is optionally substituted by 1-2 substituents independently selected from halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, and C1-4alkylcarbonyl; or —NHL1R1 is nitro;
        R3 is selected from hydrogen, halo, cyano, C1-4alkyl and haloC1-4alkyl;
        R4 is selected from hydrogen, C1-4alkyl, haloC1-4alkyl, and —C(O)R10, wherein R10 is hydroxy, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from hydroxyl, halo and C1-4alkyl;
        L3 is a bond, phenylene, or C5-6heteroarylene;
        R0 is selected from hydrogen, hydroxyl, halo, nitro, —N═CHN(CH3)2, C1-4alkyl, C1-4alkoxy, —NR2aR2b, —NR5C(O)R6, —NR5S(O)2R8, C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein
        
            the C1-4alkyl or C1-4alkoxy is optionally substituted by 1-2 substituents independently selected from C1-4alkoxy, amino, phenyl and C5-6heteroaryl; wherein the phenyl or C5-6heteroaryl is optionally further substituted by halo or C1-4alkyl;
            the C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with halo, oxo, C1-4alkyl, hydroxyC1-4-alkyl, haloC1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, and —(CH2)1-4NRaRb,
        
        
        wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        R2a is hydrogen or C1-4alkyl;
        R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxyl, halo or C1-4alkyl;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl and R9b is selected from hydrogen, C1-4alkyl, C1-4alkylcarbonyl and C1-4alkoxycarbonyl, and the C5-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl,
            the C5-6heteroaryl of R6 is optionally substituted with 1-2 substituents selected from hydroxy, C1-4alkyl, and C1-4alkoxycarbonyl,
            the C3-6cycloalkyl or C4-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxylC1-4alkyl, aminocarbonyl, C1-4alkoxycarbonyl, and C1-4alkoxycarbonylaminoC1-4alkyl, and
        
        
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


In a second aspect, the present invention provides a pharmaceutical composition which contains a compound of the invention selected from Formula I, a N-oxide derivative, individual isomers and mixture of isomers thereof; or a pharmaceutically acceptable salt thereof, in admixture with one or more suitable excipients.
In a third aspect, the present invention provides a method of treating a disease in an animal in which a compound of the invention can prevent, inhibit or ameliorate the pathology and/or symptomology of a disease caused by a parasite of the Leishmania genus, for example, Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, Leishmania major, Trypanosoma cruzi, and Trypanosoma brucei and a parasite of the Trypanosoma genus, for example, Trypanosoma cruzi and Trypanosoma brucei, which method comprises administering to the animal a therapeutically effective amount of a compound selected from Formula I, an N-oxide derivative, individual isomers and mixture of isomers thereof, or a pharmaceutically acceptable salt thereof.
In a fourth aspect, the present invention provides a compound of Formula I, an N-oxide derivative, individual isomers and mixture of isomers thereof, or a pharmaceutically acceptable salt thereof, for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a disease caused by a parasite of the Leishmania genus, for example, Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, Leishmania major, Trypanosoma cruzi, and Trypanosoma brucei and a parasite of the Trypanosoma genus, such as, for example, Trypanosoma cruzi and Trypanosoma brucei. Particularly, the parasite is a Leishmania, and the disease is Leishmanaisis.
In a fifth aspect, the present invention provides the use of a compound selected from Formula I, an N-oxide derivative, individual isomers and mixture of isomers thereof, or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for treating a disease caused by a parasite in an animal. The disease may be Leishmaniasis, Human African Trypanosomiasis and/or Chagas disease.
Unless specified otherwise, the term “compounds of the present invention” refers to compounds of Fomula (I) and subformulae thereof, salts of the compound, hydrates or solvates of the compounds, salts, as well as all stereoisomers (including diastereoisomers and enantiomers), tautomers and isotopically labeled compounds (including deuterium substitutions). Compounds of the present invention further comprise polymorphs of compounds of formula I (or subformulae thereof) and salts thereof.


DETAILED DESCRIPTION OF THE INVENTION
Definitions
For purposes of interpreting this specification, the following definitions will apply and whenever appropriate, terms used in the singular will also include the plural and vice versa.
“Acyl” as used herein refers to the radical —C(═O)Ra, where Ra is hydrogen or a non-hydrogen substituent on the carbonyl carbon, forming different carbonyl-containing groups including, but are not limited to, acids, acid halides, aldehydes, amides, esters, and ketones.
“Alkoxy” as used herein refers the radical O-alkyl, wherein the alkyl is as defined herein. CXalkoxy and CX-Yalkoxy as used herein describe alkoxy groups where X and Y indicate the number of carbon atoms in the alkyl chain. Representative examples of C1-10alkoxy include, but are not limited to, methoxy, ethoxy, propoxy, 2-propoxy, butoxy, tert-butoxy, pentyloxy, hexyloxy, heptyloxy, octyloxy and decyloxy. The alkyl portion of the alkoxy may be optionally substituted, and the substituents include those described for the alkyl group below.
“Alkyl” as used herein refers to a fully saturated branched or unbranched hydrocarbon chain having up to 10 carbon atoms. CX alkyl and CX-Y alkyl as used herein describe alkyl groups where X and Y indicate the number of carbon atoms in the alkyl chain. For example, C1-10 alkyl refers to an alkyl radical as defined above containing one to ten carbon atoms. C1-10 alkyl includes, but are not limited to, methyl, ethyl, n-propyl, iso-propyl, n-butyl, sec-butyl, iso-butyl, tert-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, 3-methylhexyl, 2,2-dimethylpentyl, 2,3-dimethylpentyl, n-heptyl, n-octyl, n-nonyl, n-decyl and the like. Alkyl represented along with another radical like arylalkyl, heteroarylalkyl, alkoxyalkyl, alkoxyalkyl, alkylamino, where the alkyl portion shall have the same meaning as described for alkyl and is bonded to the other radical. For example, (C6-10)aryl(C1-3)alkyl includes, benzyl, phenylethyl, 1-phenylethyl, 3-phenylpropyl, 2-thienylmethyl, 2-pyridinylmethyl and the like.
Unless stated otherwise specifically in the specification, an alkyl group may be unsubstituted or substituted by one or more substituents to the extent that such substitution makes sense chemically. Typical substituents include, but are not limited to halo, hydroxyl, alkoxy, cyano, amino, acyl, aryl, arylalkyl, and cycloalkyl, or an heteroforms of one of these groups, and each of which can be substituted by the substituents that are appropriate for the particular group.
“Alkenyl” as used herein refers to a straight or branched, hydrocarbon chain having up to 10 carbon atoms and at least one carbon-carbon double bond. CXalkenyl and CX-Yalkenyl as used herein describe alkenyl groups where X and Y indicate the number of carbon atoms in the alkenyl chain. Examples of C2-7alkenyl include vinyl, allyl, isopropenyl, pentenyl, hexenyl, heptenyl, 1-propenyl, 2-butenyl, 2-methyl-2-butenyl, and the like. The alkenyl may be optionally substituted, and the substituents include those described for the alkyl group descried herein.
“Alkynyl” as used herein refers to a straight or branched, hydrocarbon chain having up to 10 carbon atoms and at least one carbon-carbon triple bond. CXalkynyl and CX-Yalkynyl as used herein describe alkynyl groups, where X and Y indicate the number of carbon atoms in the alkynyl chain. For example, C2-7alkenyl include, but are not limited to, ethynyl, propargyl, 3-methyl-1-pentynyl, 2-heptynyl and the like. An alkynyl may be optionally substituted, and the substituents include those described for the alkyl group described herein.
“Alkylene” as used herein refers to a divalent alkyl group defined herein. Examples of C1-10alkylene includes, but are not limited to, methylene, ethylene, n-propylene, iso-propylene, n-butylene, sec-butylene, iso-butylene, tert-butylene, n-pentylene, isopentylene, neopentylene, n-hexylene, 3-methylhexylene, 2,2-dimethylpentylene, 2,3-dimethylpentylene, n-heptylene, n-octylene, n-nonylene and n-decylene. An alkylene group may be optionally substituted, and the substituents include those described for the alkyl group described herein.
“Alkenylene” as used herein refers to a divalent alkenyl group defined herein. Examples of C1-3alkenylene include, but are not limited to, ethene-1,2-diyl, propene-1,3-diyl, and methylene-1,1-diyl. An alkenylene may be optionally substituted, and the substituents include those described for the alkyl group described herein.
“Alkynylene” as used herein refers to a divalent alkynyl group defined herein. Examples of alkynylene include ethyne-1,2-diylene, propyne-1,3-diylene, and the like. An alkynylene may be optionally substituted, and the substituents include those described for the alkyl group described herein.
“Amino” as used herein refers to the radical —NH2. When an amino is described as “substituted” or “optionally substituted”, the term includes NR′R′′ wherein each R′ and R′′ is independently H, or is an alkyl, alkenyl, alkynyl, acyl, aryl, aryl, cycloalkyl, arylalkyl cycloalkylalkyl group or a heteroform of one of these groups, and each of the alkyl, alkenyl, alkynyl, acyl, aryl, arylalkyl or groups or heteroforms of one of these groups, each of which is optionally substituted with the substituents described herein as suitable for the corresponding group.
The term “amino” also includes forms wherein R′ and R′′ are linked together to form a 3-8 membered ring which may be saturated, unsaturated or aromatic and which contains 1-3 heteroatoms independently selected from N, O and S as ring members, and which is optionally substituted with the substituents described as suitable for alkyl groups or, if NR′R′′ is an aromatic group, it is optionally substituted with the substituents described as typical for heteroaryl groups.
Unless indicated otherwise, the compounds of the invention containing amino moieties may include protected derivatives thereof. Suitable protecting groups for amino moieties include acetyl, tert-butoxycarbonyl, benzyloxycarbonyl, and the like.
“Alkylamino” as used herein refers to the radical —NRaRb, where at least one of, or both, Ra and Rb are an alkyl group as described herein. A C1-4alkylamino group includes —NHC1-4alkyl and —N(C1-4alkyl)2; e.g., —NHCH3, —N(CH3)2, —NH(CH2CH3), —N(CH2CH3)2, and the like.
“Aromatic” as used herein refers to a moiety wherein the constituent atoms make up an unsaturated ring system, where all atoms in the ring system are sp2 hybridized and the total number of pi electrons is equal to 4n+2. An aromatic ring may be such that the ring atoms are only carbon atoms or may include carbon and non-carbon atoms (see Heteroaryl).
“Aryl” as used herein refers to a 6-14 membered monocyclic or polycyclic aromatic ring assembly where all the ring atoms are carbon atoms. Typically, the aryl is a 6 membered monocyclic, a 10-12 membered bicyclic or a 14-membered fused tricyclic aromatic ring system. CXaryl and CX-Yaryl as used herein describe an aryl group where X and Y indicate the number of carbon atoms in the ring system. C6-14aryls include, but are not limited to, phenyl, biphenyl, naphthyl, azulenyl, and anthracenyl.
An aryl may be unsubstituted or substituted by 1-5 (such as one, or two, or three) substituents independently selected from the group consisting of hydroxy, thiol, cyano, nitro, C1-4alkyl, C1-4alkenyl, C1-4alkynyl, C1-4alkoxy, thioC1-4alkyl, C1-4alkenyloxy, C1-4alkynyloxy, halogen, C1-4alkylcarbonyl, carboxy, C1-4alkoxycarbonyl, amino, C1-4alkylamino, di-C1-4alkylamino, C1-4alkylaminocarbonyl, di-C1-4alkylaminocarbonyl, C1-4alkylcarbonylamino, C1-4alkylcarbonyl(C1-4alkyl)amino, sulfonyl, sulfamoyl, alkylsulfamoyl, C1-4alkylaminosulfonyl, aryl, heteroaryl, cycloalkyl and heterocycloalkyl, wherein each of the afore-mentioned substitutents may be further substituted by one or more substituents independently selected from halogen, alkyl, hydroxyl or C1-4alkoxy groups.
When an “aryl” is represented along with another radical like “arylalkyl”, “aryloxyalkyl”, “aryloxycarbonyl”, “aryloxy-carbonylalkyl”, the aryl portion shall have the same meaning as described in the above-mentioned definition of “aryl”.
“Aryloxy” as used herein, refers to the radical —O-aryl, wherein aryl is as defined herein.
“Bicyclic” or “bicyclyl” as used here in refers to a ring assembly of two rings where the two rings are fused together, linked by a single bond or linked by two bridging atoms. The rings may be a carbocyclyl, a heterocyclyl, or a mixture thereof.
“Bridging ring” as used herein refers to a polycyclic ring system where two ring atoms that are common to two rings are not directly bound to each other. One or more rings of the ring system may also comprise heteroatoms as ring atoms. Non-exclusive examples of bridging rings include norbornanyl, 7-oxabicyclo[2.2.1]heptanyl, adamantanyl, and the like.
“Carbamoyl” as used herein refers to the radical —C(O)NRa— where Ra is H, or is an alkyl, alkenyl, alkynyl, acyl, aryl, or arylalkyl group or a heteroform of one of these groups, and each of the alkyl, alkenyl, alkynyl, acyl, aryl, arylalkyl or heteroforms of one of these groups is optionally substituted with the substituents described herein as suitable for the corresponding group.
“Carbamate” as used herein refers to the radical —OC(O)NRaRb where Ra and Rb are each independently H, or is an alkyl, alkenyl, alkynyl, acyl, aryl, or arylalkyl group or a heteroform of one of these groups, and each of the alkyl, alkenyl, alkynyl, acyl, aryl, arylalkyl or heteroforms of one of these groups is optionally substituted with the substituents described herein as suitable for the corresponding group.
“Cycloalkyl”, as used herein, means a radical comprising a non-aromatic, saturated or partially unsaturated, monocyclic, bicyclic, tricyclic, fused, bridged or spiro polycyclic hydrocarbon ring system of 3-20 carbon atoms. CXcycloalkyl and CX-Ycycloalkyl are typically used where X and Y indicate the number of carbon atoms in the ring assembly. For example, C3-6cycloalkyl includes cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexenyl, 2,5-cyclohexadienyl.
Exemplary monocyclic cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl and cyclohexenyl and the like. Exemplary bicyclic cycloalkyls include bornyl, norbornanyl, indyl, hexahydroindyl, tetrahydronaphthyl, decahydronaphthyl, bicyclo[2.1.1]hexyl, bicyclo[2.2.1]heptyl, bicyclo[2.2.1]heptenyl, 6,6-dimethylbicyclo[3.1.1]heptyl, 2,6,6-trimethylbicyclo[3.1.1]heptyl, bicyclo[2.2.2]octyl. Exemplary tricyclic cycloalkyl groups include, for example, adamantyl.
A cycloalkyl may be unsubstituted or substituted by one, or two, or three, or more substituents independently selected from the group consisting of hydroxyl, thiol, cyano, nitro, oxo, alkylimino, C1-4alkyl, C1-4alkenyl, C1-4alkynyl, C1-4alkoxy, C1-4thioalkyl, C1-4alkenyloxy, C1-4alkynyloxy, halogen, C1-4alkylcarbonyl, carboxy, C1-4alkoxycarbonyl, amino, C1-4alkylamino, di-C1-4alkylamino, C1-4alkylaminocarbonyl, di-C1-4alkylaminocarbonyl, C1-4alkylcarbonylamino, C1-4alkylcarbonyl(C1-4alkyl)amino, sulfonyl, sulfamoyl, alkylsulfamoyl, C1-4alkylaminosulfonyl where each of the afore-mentioned hydrocarbon groups (e.g., alkyl, alkenyl, alkynyl, alkoxy residues) may be further substituted by one or more residues independently selected at each occurrence from halogen, hydroxyl or C1-4alkoxy groups.
“Cycloalkylene”, as used herein, refers to a divalent radical comprising a cycloalkyl ring assembly as defined herein.
“Cycloalkoxy”, as used herein, refers to —O-cycloalkyl, wherein the cycloalkyl is defined herein. Representative examples of C3-12cycloalklyoxy include, but are not limited to, monocyclic groups such as cyclopropoxy, cyclobutoxy, cyclopentyloxy, cyclopentenyloxy, cyclohexyloxy and cyclohexenyloxy and the like. Exemplary bicyclic hydrocarbon groups include bornyloxy, indyloxy, hexahydroindyloxy, tetrahydronaphthyloxy, decahydronaphthyloxy, bicyclo[2.1.1]hexyloxy, bicyclo[2.2.1]heptyloxy, bicyclo[2.2.1]heptenyloxy, 6,6-dimethylbicyclo[3.1.1]heptyloxy, 2,6,6-trimethylbicyclo[3.1.1]heptyloxy, bicyclo[2.2.2]octyloxy and the like. Exemplary tricyclic hydrocarbon groups include, for example, adamantyloxy.
“Cyano”, as used herein, refers to the radical —CN.
“EC50”, refers to the molar concentration of an inhibitor or modulator that produces 50% efficacy.
“Fused ring”, as used herein, refers to a multi-ring assembly wherein the rings comprising the ring assembly are so linked that the ring atoms that are common to two rings are directly bound to each other. The fused ring assemblies may be saturated, partially saturated, aromatics, carbocyclics, heterocyclics, and the like. Non-exclusive examples of common fused rings include decalin, naphthalene, anthracene, phenanthrene, indole, benzofuran, purine, quinoline, and the like.
“Halo” or “halogen” as used herein refers to fluoro, chloro, bromo, and iodo.
“Haloalkyl”, or halo-substituted-alkyl” as used herein, refers to an alkyl as defined herein, which is substituted by one or more halo atoms defined herein. The haloalkyl can be mono-haloalkyl, dihaloalkyl or polyhaloalkyl including perhaloalkyl. A monohaloalkyl can have one iodo, bromo, chloro or fluoro within the alkyl group. Dihaloalky and polyhaloalkyl groups can have two or more of the same halo atoms or a combination of different halo groups within the alkyl. CXhaloalkyl and CX-Yhaloalkyl are typically used where X and Y indicate the number of carbon atoms in the alkyl chain. Non-limiting examples of C1-4haloalkyl include fluoromethyl, difluoromethyl, trifluoromethyl, chloromethyl, dichloromethyl, trichloromethyl, pentafluoroethyl, heptafluoropropyl, difluorochloromethyl, dichlorofluoromethyl, difluoroethyl, difluoropropyl, dichloroethyl and dichloropropyl. A C1-4 perhaloalkyl group refers to a C1-4alkyl group having all hydrogen atoms replaced with halo atoms.
“Heteroaryl”, as used herein, refers to a 5-14 membered ring assembly (e.g., a 5-7 membered monocycle, an 8-10 membered bicycle, or a 13-14 membered tricyclic ring system) having 1 to 8 heteroatoms selected from N, O and S as ring atoms and the remaining ring atoms are carbon atoms. The nitrogen atoms of such heteroaryl rings can be optionally quaternerized and the sulfur atoms of such heteroaryl rings can be optionally oxidized. CXheteroaryl and CX-Yheteroaryl as used herein describe heteroaryls where X and Y indicate the number of ring atoms in the heteroaryl ring. Typical C5-7heteroaryl groups include thienyl, furanyl, imidazolyl, pyrazolyl, pyrrolyl, pyrrolinyl, thiazolyl, 1,3,4-thiadiazolyl, isothiazolyl, oxazolyl, oxadiazole isoxazolyl, triazolyl, tetrazolyl, pyridyl, pyridazinyl, pyrazinyl, pyrazinyl, pyrimidinyl, and the like. Bicyclic or tricyclic C8-14heteroaryls include, but are not limited to, those derived from benzo[b]furan, benzo[b]thiophene, benzimidazole, imidazo[4,5-c]pyridine, quinazoline, thieno[2,3-c]pyridine, thieno[3,2-b]pyridine, thieno[2,3-b]pyridine, quinazolinyle, pteridinyl, indolizine, imidazo[1,2a]pyridine, quinoline, quinolinyl, isoquinoline, phthalazine, quinoxaline, naphthyridine, naphthyridinyl, quinolizine, indolyl, indole, isoindole, indazole, indoline, benzoxazole, benzopyrazole, benzothiazole, imidazo[1,5-a]pyridine, pyrazolo[1,5-a]pyridine, imidazo[1,2-a]pyrimidine, imidazo[1,2-c]pyrimidine, imidazo[1,5-a]pyrimidine, imidazo[1,5-c]pyrimidine, pyrrolo[2,3-b]pyridine, pyrrolo[2,3-c]pyridine, pyrrolo[3,2-c]pyridine, pyrrolo[3,2-b]pyridine, pyrrolo[2,3-d]pyrimidine, pyrrolo[3,2-d]pyrimidine, pyrrolo[2,3-b]pyrazine, pyrazolo[1,5-a]pyridine, pyrrolo[1,2-b]pyridazine, pyrrolo[1,2-c]pyrimidine, pyrrolo[1,2-a]pyrimidine, pyrrolo[1,2-a]pyrazine, triazo[1,5-a]pyridine, pteridine, purine, purinyl, carbazole, acridine, phenazine, phenothiazene, phenoxazine, 1,2-dihydropyrrolo[3,2,1-hi]indole, indolizine, pyrido[1,2-a]indole and 2(1H)-pyridinone.
A heteroaryl may be unsubstituted or substituted with one or more substituents independently selected from hydroxyl, thiol, cyano, nitro, C1-4alkyl, C1-4alkenyl, C1-4alkynyl, C1-4alkoxy, thioC1-4alkyl, C1-4alkenyloxy, C1-4alkynyloxy, halogen, C1-4alkylcarbonyl, carboxy, C1-4alkoxycarbonyl, amino, C1-4alkylamino, di-C1-4alkylamino, C1-4alkylaminocarbonyl, di-C1-4alkylaminocarbonyl, C1-4alkylcarbonylamino, C1-4alkylcarbonyl(C1-4alkyl)amino, sulfonyl, sulfamoyl, alkylsulfamoyl, C1-4alkylaminosulfonyl where each of the afore-mentioned hydrocarbon groups (e.g., alkyl, alkenyl, alkynyl, alkoxy residues) may be further substituted by one or more residues independently selected at each occurrence from halogen, hydroxyl or C1-4alkoxy groups.
When a heteroaryl is represented along with another radical like “heteroaryloxy”, “heteroaryloxyalkyl”, “heteroaryloxycarbonyl”, the heteroaryl portion shall have the same meaning as described in the above-mentioned definition of “heteroaryl”.
“Heteroaryloxy”, as used herein, refers to an —O-heteroaryl group, wherein the heteroaryl is as defined in this Application.
“Heteroatom”, as used herein, refers to an atom that is not a carbon atom. Particular examples of heteroatoms include, but are not limited to nitrogen, oxygen, and sulfur.
“Heterocycloalkyl”, as used herein, refers to a 4-20 membered, non-aromatic, saturated or partially unsaturated, monocyclic or polycyclic ring system, comprising 1-8 heteroatoms as ring atoms and that the remaining ring atoms are carbon atoms. The heteroatoms are selected from N, O, and S, preferably O and N. The nitrogen atoms of the heterocycloalkyl can be optionally quaternerized and the sulfur atoms of the heterocycloalkyl can be optionally oxidized. The heterocycloalkyl can include fused or bridged rings as well as spirocyclic rings. CXheterocycloalkyl and CX-Yheterocycloalkyl are typically used where X and Y indicate the number of ring atoms in the ring. Typically, the heterocycloalkyl is 4-8-membered monocyclic ring containing 1 to 3 heteroatoms, a 7 to 12-membered bicyclic ring system containing 1-5 heteroatoms, or a 10-15-membered tricyclic ring system containing 1 to 7 heteroatoms. Examples of C4-6heterocycloalkyl include azetidinyl, tetrahydrofuran (THF), dihydrofuran, 1,4-dioxane, morpholine, 1,4-dithiane, piperazine, piperidine, 1,3-dioxolane, imidazolidine, imidazoline, pyrazolidinyl, pyrroline, pyrrolidine, tetrahydropyran, dihydropyran, oxathiolane, dithiolane, 1,3-dioxane, 1,3-dithiane, oxathiane, thiomorpholine, and the like
A heterocycloalkyl may be unsubstituted or substituted with 1-5 substituents (such as one, or two, or three) each independently selected from hydroxyl, thiol, cyano, nitro, oxo, alkylimino, C1-4alkyl, C1-4alkenyl, C1-4alkynyl, C1-4alkoxy, C1-4thioalkyl, C1-4alkenyloxy, C1-4alkynyloxy, halogen, C1-4alkylcarbonyl, carboxy, C1-4alkoxycarbonyl, amino, C1-4alkylamino, di-C1-4alkylamino, C1-4alkylaminocarbonyl, di-C1-4alkylaminocarbonyl, C1-4alkylcarbonylamino, C1-4alkylcarbonyl(C1-4alkyl)amino, sulfonyl, sulfamoyl, alkylsulfamoyl, C1-4alkylaminosulfonyl where each of the afore-mentioned hydrocarbon groups (e.g., alkyl, alkenyl, alkynyl, alkoxy residues) may be further substituted by one or more residues independently selected at each occurrence from halogen, hydroxyl or C1-4alkoxy groups. When a heterocycloalkyl forms part of other groups like “heterocycloalkyl-alkyl”, “heterocycloalkoxy”, “heterocycloalkyl-aryl”, the heteroaryl portion shall have the same meaning as described in the above-mentioned definition of “heteroaryl”
“Heterocycloalkylene”, as used herein, refers to a cycloalkylene, as defined in this Application, provided that one or more of the ring member carbon atoms is replaced by a heteroatom.
“Heterocycloalkyl fused to a phenyl” as used herein, refers to a bicyclic fused ring system that one of the rings is heterocycloalkyl as defined above and the other ring is a phenyl. A heterocycloalkyl fused to a phenyl includes but are not limited to benzo[b][1,4]oxazinyl, oxo-benzo[b][1,4]oxazinyl, tetrahydroquinoxalinyl, tetrahydroquinolinyl, indolinyl, benzo[d]imidazolyl, and the like.
“Heterocyclyl”, “heterocycle” or “heterocyclo”, as used herein, refers to a 3-20 membered, monocyclic or polycyclic ring system containing at least one heteroatom moiety selected from the group consisting of N, O, SO, SO2, (C═O), and S, and preferably N, O, S, optionally containing one to four additional heteroatoms in each ring. CXheterocyclyl and CX-Yheterocyclyl are typically used where X and Y indicate the number of ring atoms in the ring system. Unless otherwise specified, a heterocyclyl may be saturated, partially unsaturated, aromatic or partially aromatic.
Hydroxy, as used herein, refers to the radical —OH.
“Hydroxyalkyl” or “hydroxyl-substituted alkyl” as used herein, refers to an alkyl as defined herein, having one or more of the available hydrogen of the alkyl replaced by a hydroxyl group. For example, a hydroxyC1-4alkyl includes, but are not limited to, —CH2CH2OH, —CH(OH)CH2CH2OH, —CH(OH)CH2CH(OH)CH3.
“Nitro”, as used herein, refers to the radical —NO2.
“Oxo”, as used herein, refers to the divalent radical ═O
“Protected derivatives” means derivatives of inhibitors in which a reactive site or sites are blocked with protecting groups. Protected derivatives are useful in the preparation of inhibitors or in themselves may be active as inhibitors. Examples of protected group includes, but are not limited to, acetyl, tetrahydropyran, methoxymethyl ether, β-methoxyethoxymethyl ether, ρ-methoxybenzyl, methylthiomethyl ether, pivaloyl, silyl ether, carbobenzyloxy, benzyl, tert-butoxycarbonyl, ρ-methoxyphenyl, 9-fluorenylmethyloxycarbonyl, acetals, ketals, acylals, dithianes, methylesters, benzyl esters, tert-butyl esters, and silyl esters. A comprehensive list of suitable protecting groups can be found in T. W. Greene, Protecting Groups in Organic Synthesis, 3rd edition, John Wiley & Sons, Inc. 1999.
“Unsubstituted or substituted” or “optionally substituted” as used herein indicate the substituent bound on the available valance of a named group or radical. “Unsubstituted” as used herein indicates that the named group or radical will have no further non-hydrogen substituents. “Substituted” or “optionally substituted” as used herein indicates that at least one of the available hydrogen atoms of named group or radical has been (or may be) replaced by a non-hydrogen substituent.
“Substituted terminally” as used herein referred to a substituent replacing a hydrogen at a terminal position of the parent molecule. For example C1-4alkyl substituted terminally by an amino means —C1-4alkylene-amino, which includes —(CH2)—NH2, —(CH2)2—NH2, —(CH2)3—NH2, —(CH2)CH2(CH2—NH2), —(CH2)4—NH2, —C(CH2)(CH2CH2—NH2)—C(CH3)2(CH2—NH2), and the like.
Unless otherwise specified, examples of substituents may include, but are not limited to, halo, nitro, cyano, thio, oxy, hydroxy, carbonyloxy, C1-6alkoxy, C6-10aryloxy, heteroC5-10aryloxy, carbonyl, oxycarbonyl, aminocarbonyl, amino, C1-6alkylamino, sulfonamido, imino, sulfonyl, sulfinyl, C1-6alkyl, C1-6haloalkyl, hydroxyC1-6alkyl, carbonylC1-6alkyl, thiocarbonylC1-10alkyl, sulfonylC1-6alkyl, sulfinylC1-6alkyl, C1-10azaalkyl, iminoC1-6alkyl, C3-12cycloalkylC1-6alkyl, C4-15heterocycloalkylC1-6alkyl, C6-10arylC1-6alkyl, C5-10heteroarylC1-6alkyl, C10-12bicycloarylC1-6alkyl, C9-12heterobicycloarylC1-6alkyl, C3-12cycloalkyl, C4-12heterocycloalkyl, C9-12bicycloalkyl, C3-12heterobicycloalkyl, C4-12aryl, heteroC1-10aryl, C9-12bicycloaryl and C4-12heterobicycloaryl.
“Sulfamoyl” as used herein refers to the radical —S(O)2NRaRb where Ra and Rb are independently H, or is an alkyl, alkenyl, alkynyl, acyl, aryl, aryl, cycloalkyl, arylalkyl cycloalkylalkyl group or a heteroform of one of these groups, and each of the alkyl, alkenyl, alkynyl, acyl, aryl, arylalkyl groups or heteroforms of one of these groups, is optionally substituted with the substituents described herein as suitable for the corresponding group.
“Sulfanyl” as used herein, means the radical —S—.
“Sulfinyl”, as used herein, means the radical —S(O)—. It is noted that the term “sulfinyl” when referring to a monovalent substituent can alternatively refer to a substituted sulfinyl group, —S(═O)R, where R is hydrogen or a non-hydrogen substituent on the sulfur atom forming different sulfinyl groups including sulfinic acids, sulfinamides, sulfinyl esters, and sulfoxides.
“Sulfonyl”, as used herein, means the radical —S(O)2—. It is noted that the term “sulfonyl” when referring to a monovalent substituent can alternatively refer to a substituted sulfonyl group, —S(═O)2R, where R is hydrogen or a non-hydrogen substituent on the sulfur atom forming different sulfonyl groups including sulfonic acids, sulfonamides, sulfonate esters, and sulfones.
“Thiocarbonyl”, as used herein, refers to the radical —C(═S)—. It is noted that the term thiocarbonyl when referring to a monovalent substituent can alternatively refer to a substituted thiocarbonyl group, —C(═S)R, where R is hydrogen or a non-hydrogen substituent on the carbon atom forming different thiocarbonyl groups including thioacids, thioamides, thioesters, and thioketones.




are symbols denoting the point of attachment of X, to other part of the molecule.

Any definition herein may be used in combination with any other definition to describe a composite structural group. By convention, the trailing element of any such definition is that which attaches to the parent moiety. For example, the composite group alkoxyalkyl would represent an alkoxy group attached to the parent molecule through an alkyl group.
It is noted in regard to all of the definitions provided herein that the definitions should be interpreted as being open ended in the sense that further substituents beyond those specified may be included. Hence, a C1alkyl indicates that there is one carbon atom but does not indicate what are the substituents on the carbon atom. Hence, a C1alkyl comprises methyl (i.e., —CH3) as well as —CRaRbRc where Ra, Rb, and Rc may each independently be hydrogen or any other substituent where the atom attached to the carbon is not a hydrogen atom. Hence, —CF3, —CH2OH and —CH2CN, for example, are all C1alkyls.
DESCRIPTION OF THE PREFERRED EMBODIMENTS
The invention provides a novel class of compounds, pharmaceutical compositions comprising such compounds and methods of using such compounds to treat or prevent diseases or disorders associated with a parasite. In particular, the compounds can be used to treat leishmaniasis, Human Trypanosomiasis and/or Chagas disease. The compounds of the invention are effective in inhibiting, ameliorating, or eradicating the pathology and/or symptomology of the parasite.
In one embodiment, the compound of the invention is of Formula I:




or a pharmaceutically acceptable salt, or stereoisomer thereof; wherein

    
    
        L1 is —C(O)— or —S(O)2—;
        R1 is selected from nitro, C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is optionally substituted by 1-2 substituents independently selected from halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, and C1-4alkylcarbonyl; or —NHL1R1 is nitro;
        R3 is selected from hydrogen, halo, cyano, C1-4alkyl and haloC1-4alkyl;
        R4 is selected from hydrogen, C1-4alkyl, haloC1-4alkyl, and —C(O)R10, wherein R10 is hydroxy, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from hydroxyl, halo and C1-4alkyl;
        L3 is a bond, phenylene, or C5-6heteroarylene;
        R0 is selected from hydrogen, hydroxyl, halo, nitro, —N═CHN(CH3)2, C1-4alkyl, C1-4alkoxy, —NR2aR2b, —NR5C(O)R6, —NR0S(O)2R8, C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein
        
            the C1-4alkyl or C1-4alkoxy is optionally substituted by 1-2 substituents independently selected from C1-4alkoxy, amino, phenyl and C5-6heteroaryl; wherein the phenyl or C5-6heteroaryl is optionally further substituted by halo or C1-4alkyl;
            the C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with halo, oxo, C1-4alkyl, hydroxyC1-4-alkyl, haloC1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        
        
        R2a is hydrogen or C1-4alkyl;
        R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxyl, halo or C1-4alkyl;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl and R9b is selected from hydrogen, C1-4alkyl, C1-4alkylcarbonyl and C1-4alkoxycarbonyl, and the C5-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl,
            the C5-6heteroaryl of R6 is optionally substituted with 1-2 substituents selected from hydroxy, C1-4alkyl, and C1-4alkoxycarbonyl,
            the C3-6cycloalkyl or C4-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxylC1-4alkyl, aminocarbonyl, C1-4alkoxycarbonyl, and C1-4alkoxycarbonylaminoC1-4alkyl, and
        
        
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


In another embodiment of the above embodiment of the compound of the invention, L1 is —C(O)—.
In another embodiment of the above embodiments, in one variation, R1 is selected from C1-4alkyl, C1-6alkoxy, amino, C5-3heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each is optionally substituted by 1-2 substituents independently selected from hydroxyl, halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, C1-4alkylcarbonyl, phenyl and C5-6heteroaryl.
In another variation, R1 is selected from C1-6alkoxy and C1-6alkylamino, wherein the C1-6alkoxy and C1-6alkylamino are each optionally substituted by 1-2 substituents independently selected from C1-4alkyl and C1-4alkoxy.
In another variation, R1 is selected from —CH3, —(CH2)1-3CH3, —CH(CH3)2, —CH2CH(CH3)2, —(CH2)2P, —(CH2)2OCH3, —N(CH3)2, —N(CH3)CH2CH3, —N(CH2CH3)2, —N(CH3)OCH3, —OCH2CH3, —O(CH2)3CH3, —OCH(CH3)2, —OCH2CH(CH3)2, —O(CH2)2OCH3.
In still another variation, R1 is selected from —N(CH3)CH2CH3, —N(CH3)2, —N(CH2CH3)2, —N(CH3)OCH3, —OCH2CH3, —OCH(CH3)2, —O(CH2)2OCH3.
In still another variation, R1 is selected from C3-3heteroaryl, C4-6heterocycloalkyl, and C3-6cycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl and C1-4alkoxy.
In yet another variation, R1 is selected from pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, furanyl, thiophenyl, thiazolyl, phenyl, pyrazinyl, cyclopropyl, cyclopentyl, pyrrolidinyl, and indolyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl, haloC1-4alkyl and C1-4alkylcarbonyl.
In another embodiment of first embodiment above, in one variation, L1-R1 is selected from —C(O)CH(CH3)2, —C(O)(CH2)2F, —C(O)CH(NH2)(CH3), —C(O)N(CH3)2, —C(O)N(CH3)CH2CH3, —C(O)N(CH2CH3)2, —C(O)N(CH3)OCH3, —C(O)OCH2CH3, —C(O)OCH(CH3)2, —C(O)OCH(CH3)(CH2CF13), —C(O)O(CH2)CH(CH3)2, —C(O)O(CH2)2OCH3. —S(O)2CH3, and —S(O)2CH(CH3)2.
In another variation, L1-R1 is selected from —NHC(O)N(CH3)CH2CH3, —NHC(O)N(CH3)OCH3, —NHC(O)N(CH3)2, —NHC(O)N(CH2CH3)2, —NHC(O)OCH2CH3, —NHC(O)OCH(CH3)2, and —NHC(O)O(CH2)2OCH3.
In another variation, L1-R1 is selected from










In still another variation, L1-R1 is selected from




In another embodiment of the first embodiment of the compounds of the invention, NHL1R1 is nitro.
In still another embodiment of the above embodiments and variations of the compound of the invention, R3 is selected from hydrogen, halo, methyl, or trifluoromethyl. In one variation, R3 is chloro or fluoro. In another variation, R3 is methyl or trifluorormethyl. In yet another variation, R3 is hydrogen.
In still another embodiment of the above embodiments and variations of the compound of the invention, R4 is hydrogen, fluoro, ethyl, —C(O)OCH(CH3)(CH2CH3), and —C(O)OCH(CH3)2. In one variation, R4 is halo. In another variation, R4 is C1-4alkyl. In still another variation, R4 is hydrogen.
In yet another embodiment of the above embodiments and variations of the compound of the invention, in one variation, R0 is selected from hydrogen, halo, nitro, —N═CHN(CH3)2, —NHR2b, —NR5C(O)R6, —NR5S(O)2R8, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein

    
    
        the C4-8heterocycloalkyl, C4-8heterocycloalkenyl, phenyl and C5-8heteroaryl of R0 is optionally substituted with oxo, C1-4alkyl, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxy or halo;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl, and R9b is selected from hydrogen, C1-4alkyl, and C1-4alkoxycarbonyl; and the C5-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl;
            the C5-6heteroaryl of R6 is optionally substituted with 1 to 2 C1-4alkyl;
            the C3-6cycloalkyl or C4-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, —CH2OCH3, —C(O)NH2, C1-4alkoxycarbonyl and C1-4alkoxycarbonylaminoC1-4alkyl; and
        
        
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


In another variation of the above embodiment, R0 is selected from hydrogen, halo, nitro, hydroxyl, C1-4alkoxy, amino, C1-4alkylamino, —NH(CH2)1-2-phenyl, —NR5C(O)R6, —NR5S(O)2R8, oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl and C5-6heteroaryl; wherein

    
    
        the oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl or C5-6heteroaryl is optionally substituted with halo, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from C1-6alkyl, C1-6alkoxyl, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, each of which is optionally substituted with 1 to 2 substituents independently selected from hydroxyl, C1-4alkoxy, amino, C1-4alkylamino; and
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


In another variation of the above embodiment, R0 is selected from hydrogen, fluoro, chloro, nitro, methyl, —NH2, —NH(CH3), —NH(CH2CH3), —N(CH3)2, —NHCH2C(CH3)2NH2, —NH(CH2)1-2-4-fluorophenyl, —NH-pyridin-3-yl, —NHCH2-pyridin-4-yl, —NHCH2-2-hydroxypyridin-3-yl, —NHCH2-piperidin-4-yl, phenyl, thiophenyl, imidazolyl, oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, and pyrrolidin-2-one, wherein the oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, and pyrrolidin-2-one are each optionally substituted by C1-4alkyl, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl.
In yet another variation of the above embodiment, R0 is —NR5C(O)R6, wherein

    
    
        R5 is hydrogen or C1-4alkyl;
        R6 is hydrogen, C1-4alkyl, C1-4alkoxy, amino, C3-6cycloalkyloxy, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, amino and C3-6cycloalkyloxy are each optionally substituted by 1-2 substituents independently selected from halo, hydroxyl, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NH2, C1-4alkylamino, —NHC(O)OC(CH3)3, pyrrolidinyl, piperidinyl, morpholinyl, and pyridinyl, wherein the pyrrolidinyl, piperidinyl, morpholinyl, or pyridinyl are each optionally substituted by hydroxy, C1-4alkyl, or —C(O)OC(CH3)3);
            the C5-6heteroaryl is optionally substituted with 1-2 substituents independently selected from hydroxyl and C1-4alkyl;
            the C3-6cycloalkyl or C4-6heterocycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, methyl, trifluoromethyl, —CH2OCH3, —CH2NHC(O)(O)C(CH3)3, —C(O)(O)C(CH3)3, and —C(O)NH2.
        
        
    
    


In yet still another variation of the above embodiment, R0 is —NHC(O)R6, wherein R6 is selected from hydrogen, methyl, ethyl propyl, isopropyl, butyl, isobutyl, tert-butyl, —(CH2)NH2, —(CH2)2NH2, —(CH2)3NH2, —CH2C(CH3)2NH2, —CH(CH3)NH2, —C(CH3)2NH2, —CH2N(CH3)2, —(CH2)2NHC(O)OC(CH3)3, —(CH2)-piperidin-4-yl, —CH2-2-hydroxypiperidin-3-yl, —(CH2)-pyrrolidin-3-yl, —CH2-(1-tert-butoxycarbonyl)pyrrolidin-3-yl, —(CH2)2-3-morpholinyl, —(CH2)-pyridin-3-yl, —(CH2)2OH, —C(CH3)2CH2OH, —CH(OH)CH2OH, —(CH2)2OCH3; —OCH3, —OCH2CH3, —OCH2CH2CH3, —OCH(CH3)2, —OCH(CH3)(CH2CH3), 1-methylcycopropoxy, —O(CH2)2F, —OC(CH3)2NH2, —OCH2C(CH3)2NH2, —O(CH2)2OCH3, —O(CH2)2—NHC(O)OC(CH3)3, —OCH2C(CH3)2—NHC(O)OC(CH3)3, —NH2, —NH(CH3), —NHCH(CH3)2, —N(CH3)2, and —N(CH3)CH(CH3)2, and —NH-pyridin-3-yl.
In yet still another variation of the above embodiment, R0 is —NHC(O)R6, wherein R6 is selected from thiazolyl, pyridinyl, cyclopropyl, cyclobutyl, azetidinyl, pyrrolidinyl, pyrrolidinyl, piperidinyl, and oxetanyl, each of which is independently optionally substituted with 1-2 substituents independently selected from fluoro, cyano, hydroxy, C1-4alkyl, trifluoromethyl, —CH2NHC(O)OC(CH3)3, —C(O)NH2, —CH2—O—(CH3), and —C(O)OC(CH3)3 
In yet still another variation of the above embodiment, R0 is —NHS(O)2R8, wherein R8 is C1-4alkyl or C1-4alkylamino.
In yet still another variation of the above embodiment, R0 is —NHS(O)2R8, wherein R8 is methyl, isopropyl, methylamino or dimethylamino.
In yet another embodiment of the above embodiments and variations of the compounds of the invention, in one variation, L3R0 is selected from chloro, bromo, nitro, —NHC(O)OCH(CH3)2, —N(CH2CH3)C(O)OCH(CH3)2, NHC(O)OCH3, —NHC(O)N(CH3)2, phenyl, and thiophen-3-yl.
In another variation of the above embodiment, -L3R0 is selected from —NH—C(O)CH(CH3)2, —NH—C(O)-cyclopropyl, —NH—C(O)O-cyclopropyl, —NH—C(O)-cyclobutyl, wherein the cyclopropyl and cyclobutyl are each independently optionally substituted by a substituent independently selected from cyano, halo and C1-4alkyl.
In another variation, L3R0 is selected from —NHC(O)OCH(CH3)2, —NHC(O)OCH2CH3, —NHC(O)OCH3, nitro,




In yet another embodiment, -L3R0 is —NHC(O)OCH(CH3)2.
Compounds of the invention include, but are not limited to the following: propan-2-yl N-{2-[2-chloro-5-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-{2-[3-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-(2-{2-chloro-5-[(3,3-difluoropyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-(2-{3-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-[2-(3-{[ethyl(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-{2-[3-(pyrazine-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-{2-[3-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-[2-(5-{[ethyl(methyl)carbamoyl]amino}-2-fluorophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-(2-{3-[(ethoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-{2-[3-(1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-{2-[2-fluoro-5-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-{2-[3-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-[2-(3-{[methoxy(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}-3-fluoroimidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-(2-{3-[(diethylcarbamoyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-(2-{2-fluoro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-{2-[3-(5-chlorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-[2-(2-fluoro-5-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-(2-{3-[(dimethylcarbamoyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate; propan-2-yl N-[2-(3-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-{2-[3-(2,4-dimethyl-1,3-oxazole-5-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; propan-2-yl N-[2-(3-{[(2-methoxyethoxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; methyl N-[4-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)phenyl]carbamate; N-{4-chloro-3-[6-(4-fluorophenyl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide; N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide; methyl N-(4-{2-[2-chloro-5-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}phenyl)carbamate; N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide; N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide; N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}-5-methylfuran-2-carboxamide; N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran-2-carboxamide; 2-methoxyethyl N-[4-chloro-3-(6-{4-[(methoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-2-yl)phenyl]carbamate; N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran-2-carboxamide; 2-methoxyethyl N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}carbamate; 2-methoxyethyl N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate; 2-methoxyethyl N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate; ethyl N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate; N-(4-chloro-3-{6-chloroimidazo[1,2-a]pyrimidin-2-yl}phenyl)furan-2-carboxamide; N-(4-chloro-3-{3-fluoro-6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide; propan-2-yl N-[2-(2-fluoro-5-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate; propan-2-yl N-{2-[3-(5-methyl-1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; and propan-2-yl N-[2-(3-cyclopropaneamidophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate.
It is noted that the compounds of the present invention may be in the form of a pharmaceutically acceptable salt. It is further note that the compounds of the present invention may be a mixture of stereoisomers, or the compound may comprise a single stereoisomer.
Further compounds of the invention are detailed in the Examples, infra.
In another aspect, the present invention is directed to a pharmaceutical composition which includes as an active ingredient a compound according to any one of the above embodiments and variations in combination with a pharmaceutically acceptable carrier, diluent or excipient.
In another embodiment, the pharmaceutical composition is a solid formulation adapted for oral administration. In another embodiment, the composition is a liquid formulation adapted for oral administration. In yet another embodiment, the composition is a tablet. In still another embodiment, the composition is a liquid formulation adapted for parenteral administration.
In yet another embodiment, the pharmaceutical composition is adapted for administration by a route selected from the group consisting of orally, parenterally, intraperitoneally, intravenously, intraarterially, transdermally, sublingually, intramuscularly, rectally, transbuccally, intranasally, liposomally, via inhalation, vaginally, intraoccularly, via local delivery (for example by catheter or stent), subcutaneously, intraadiposally, intraarticularly, and intrathecally.
In another aspect, the present application is directed to a compound or a pharmaceutical composition according to any one of the above embodiments and variations for use in a therapeutic application.
In another aspect, the present application is directed to a compound or a pharmaceutical composition according to any one of the above embodiments and variations for use as a medicament.
In still another aspect, the present application is directed to a compound or a pharmaceutical composition according to any one of the above embodiments and variations for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein parasitic disease is Leishmaniasis, Human African Trypanosomiasis, or Chagas disease. Further the treatment may further include a second agent which may be other drugs that are known for treating Leishmaniasis, Human African Trypanosomiasis, or Chagas diseases. In one particular variation of treating Leishmaniasis, the second agent is selected from meglumine antimoniate, stibogluconate, Amphotericin, Miltefosine and paromomycin. In another particular variation of treating Human African Trypanosomiasis, the second agent is selected from pentamidine, suramin, melarsoprol, and eflornithine. In yet another particular variation of treating Chagas disease, the second agent is selected from benznidazole, nifurtimox or Amphotericin b.
In yet another aspect, the present invention is directed to a method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease. The method involves administering to a subject a therapeutically effective amount of a compound or a pharmaceutical composition according to the above embodiments and variations.
In one embodiment of the method of the invention, the disease being treated is Leishmaniasis, Human African Trypanosomiasis, or Chagas disease.
In one embodiment of the method of the invention, the disease being treated is Leishmaniasis caused by the parasite Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, or Leishmania major. 
In a embodiment, the disease being treated is visceral Leishmaniasis caused by the parasite Leishmania donovani. 
In another embodiment, the disease being treated is Human African Trypanosomiasis caused by Trypanosoma brucei, particularly, by the sub-species Tb. gambiense or Tb. rhodesiense. 
In still another embodiment of the method of the invention, the disease being treated is Chagas disease, (also call American Trypanosomiasis) caused by Trypanosoma cruzi. 
In the above method of the invention, the compounds or pharmaceutical compositions may be administered prior to, simultaneously with, or after a second agent. The second agent can be other drugs that are known for treating Leishmaniasis, Human African Trypanosomiasis, or Chagas diseases. In one particular variation for treating Leishmaniasis, the second agent is selected from meglumine antimoniate, stibogluconate, Amphotericin, Miltefosine and paromomycin. In another variation, for treating Human African Trypanosomiasis, the second agent is selected from pentamidine, suramin, melarsoprol, and eflornithine. In another particular variation of the method, for treating Chagas disease, the second agent is selected from benznidazole, nifurtimox or Amphotericin b.
In another aspect, the invention is directed to a compound, salt, steroisomer, or pharmaceutical composition thereof, according to any one of the above embodiments or variation, for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a disease caused by the parasite Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, Leishmania major, Trypanosoma cruzi, or Trypanosoma brucei. In one embodiment, the disease is visceral Leishmaniasis caused by Leishmania donovani. In another embodiment, the disease is Human African Trypanosomiasis caused by Trypanosoma brucei. In yet another embodiment, the disease is Chagas disease caused by Trypanosoma cruzi. 
In still another aspect, the present invention is directed to the use of the compound, or a salt, a stereoisomer, or a pharmaceutical composition thereof, according to the any one of the above embodiments or variations in the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a disease caused by Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, Leishmania major, Trypanosoma cruzi, or Trypanosoma brucei. In one embodiment, the medicament is for treating visceral Leishmaniasis caused by Leishmania donovani. In another embodiment, the medicament is for treating Human African Trypanosomiasis caused by Trypanosoma brucei. In yet another embodiment, the medicament is for treating Chagas disease caused by Trypanosoma cruzi. 
The medicament, in addition to the compound of the invention, may further include a second agent. The second agent may be other drugs that are known for treating Leishmaniasis, Human African Trypanosomiasis, or Chagas diseases. In one particular variation of the medicament, for treating Leishmaniasis, the second agent is selected from meglumine antimoniate, stibogluconate, Amphotericin, Miltefosine and paromomycin. In another particular variation of the medicament, for treating Human African Trypanosomiasis, the second agent is selected from pentamidine, suramin, melarsoprol, and eflornithine. In yet another particular variation of the medicament, for treating Chagas disease, the second agent is selected from benznidazole, nifurtimox or Amphotericin b.
In another aspect, the invention is related to a kit which comprises a compound of any one of the above embodiments and variations, and optionally a second therapeutic agent. In one particular variation, the kit comprises the compound in a multiple dose form.
Enumerated Embodiments
Various enumerated embodiments of the invention are described herein. It will be recognized that features specified in each embodiment may be combined with other specified features to provide further embodiments of the present invention.
In a first embodiment, the invention provides a compound of the formula (I),




or a pharmaceutically acceptable salt, or stereoisomer thereof; wherein

    
    
        L1 is —C(O)— or —S(O)2—;
        R1 is selected from nitro, C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is optionally substituted by 1-2 substituents independently selected from halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, and C1-4alkylcarbonyl; or —NHL1R1 is nitro;
        R3 is selected from hydrogen, halo, cyano, C1-4alkyl and haloC1-4alkyl;
        R4 is selected from hydrogen, C1-4alkyl, haloC1-4alkyl, and —C(O)R10, wherein R10 is hydroxy, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from hydroxyl, halo and C1-4alkyl;
        L3 is a bond, phenylene, or C5-6heteroarylene;
        R0 is selected from hydrogen, hydroxyl, halo, nitro, —N═CHN(CF13)2, C1-4alkyl, C1-4alkoxy, —NR2aR2b, —NR5C(O)R6, —NR5S(O)2R8, C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein
        
            the C1-4alkyl or C1-4alkoxy is optionally substituted by 1-2 substituents independently selected from C1-4alkoxy, amino, phenyl and C5-6heteroaryl; wherein the phenyl or C5-6heteroaryl is optionally further substituted by halo or C1-4alkyl;
            the C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with halo, oxo, C1-4alkyl, hydroxyC1-4alkyl, haloC1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        
        
        R2a is hydrogen or C1-4alkyl;
        R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxyl, halo or C1-4alkyl;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl and R9b is selected from hydrogen, C1-4alkyl, C1-4alkylcarbonyl and C1-4alkoxycarbonyl, and the C5-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl,
            the C5-6heteroaryl of R6 is optionally substituted with 1-2 substituents selected from hydroxy, C1-4alkyl, and C1-4alkoxycarbonyl,
            the C3-6cycloalkyl or C4-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxylC1-4alkyl, aminocarbonyl, C1-4alkoxycarbonyl, and C1-4alkoxycarbonylaminoC1-4alkyl, and R8 is C1-4alkyl or C1-4alkylamino.
        
        
    
    


Embodiment 2. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein L1 is —C(O)—.
Embodiment 3. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each is optionally substituted by 1-2 substituents independently selected from hydroxyl, halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, C1-4alkylcarbonyl, phenyl and C5-6heteroaryl.
Embodiment 4. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from C1-6alkoxy and C1-6alkylamino, wherein the C1-6alkoxy and C1-6alkylamino are each optionally substituted by 1-2 substituents independently selected from C1-4alkyl and C1-4alkoxy.
Embodiment 5. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from —CH3, —(CH2)1-3CH3, —CH(CH3)2, —CH2CH(CH3)2, —(CH2)2F, —(CH2)2OCH3, —N(CH3)2, —N(CH3)CH2CH3, —N(CH2CH3)2, —N(CH3)OCH3, —OCH2CH3, —O(CH2)3CH3, —OCH(CH3)2, —OCH2CH(CH3)2, —O(CH2)2OCH3.
Embodiment 6. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from —N(CH3)CH2CH3, —N(CH3)2, —N(CH2CH3)2, —N(CH3)OCH3, —OCH2CH3, —OCH(CH3)2, —O(CH2)2OCH3.
Embodiment 7. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from C5-9heteroaryl, C4-6heterocycloalkyl, and C3-6cycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl and C1-4alkoxy.
Embodiment 8. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1 or Embodiment 2, wherein R1 is selected from pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, furanyl, thiophenyl, thiazolyl, phenyl, pyrazinyl, cyclopropyl, cyclopentyl, pyrrolidinyl, and indolyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl, haloC1-4alkyl and C1-4alkylcarbonyl.
Embodiment 9. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein L1-R1 is selected from —C(O)CH(CH3)2, —C(O)(CH2)2F, —C(O)CH(NH2)(CH3), —C(O)N(CH3)2, —C(O)N(CH3)CH2CH3, —C(O)N(CH2CH3)2, —C(O)N(CH3)OCH3, —C(O)OCH2CH3, —C(O)OCH(CH3)2, —C(O)OCH(CH3)(CH2CF13), —C(O)O(CH2)CH(CH3)2, —C(O)O(CH2)2OCH3. —S(O)2CH3, and —S(O)2CH(CH3)2.
Embodiment 10. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein L1-R1 is selected from —NHC(O)N(CH3)CH2CH3, —NHC(O)N(CH3)OCH3, —NHC(O)N(CH3)2, —NHC(O)N(CH2CH3)2, —NHC(O)OCH2CH3, —NHC(O)OCH(CH3)2, and —NHC(O)O(CH2)2OCH3.
Embodiment 11. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein L1-R1 is selected from










Embodiment 12. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein L1-R1 is selected from




Embodiment 13. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiment 1, wherein NHL1R1 is nitro.
Embodiment 14. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 13, wherein R3 is selected from hydrogen, halo, methyl, or trifluoromethyl.
Embodiment 15. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 13, wherein R3 is chloro or fluoro,
Embodiment 16. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 13, wherein R3 is methyl or trifluorormethyl.
Embodiment 17. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 13, wherein R3 is hydrogen.
Embodiment 18. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 17, wherein R4 is C1-4alkyl.
Embodiment 19. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 17, wherein R4 is hydrogen, fluoro, ethyl, —C(O)OCH(CH3)(CH2CH3), and —C(O)OCH(CH3)2,
Embodiment 20. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 17, wherein R4 is hydrogen.
Embodiment 21. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is selected from hydrogen, halo, nitro, —N═CHN(CH3)2, NHR2b, —NR5C(O)R6, —NR5S(O)2R8, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein

    
    
        the C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with oxo, C1-4alkyl, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxy or halo;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl, and R9b is selected from hydrogen, C1-4alkyl, and C1-4alkoxycarbonyl; and the C6-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl;
            the C5-6heteroaryl of R6 is optionally substituted with 1 to 2 C1-4alkyl;
            the C3-6cycloalkyl or C4-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, —CH2OCH3, —C(O)NH2, C1-4alkoxycarbonyl and C1-4alkoxycarbonylaminoC1-4alkyl; and
        
        
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


Embodiment 22. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is selected from hydrogen, halo, nitro, hydroxyl, C1-4alkoxy, amino, C1-4alkylamino, —NH(CH2)1-2-phenyl, —NR5C(O)R6, —NR5S(O)2R8, oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl and C5-6heteroaryl; wherein

    
    
        the oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl or C5-6heteroaryl is optionally substituted with halo, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
        R5 is hydrogen or C1-4alkyl;
        R6 is selected from C1-6alkyl, C1-6alkoxyl, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, each of which is optionally substituted with 1 to 2 substituents independently selected from hydroxyl, C1-4alkoxy, amino, C1-4alkylamino; and
        R8 is C1-4alkyl or C1-4alkylamino.
    
    


Embodiment 23. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is selected from hydrogen, fluoro, chloro, nitro, methyl, —NH2, —NH(CH3), —NH(CH2CH3), —N(CH3)2, —NHCH2C(CH3)2NH2, —NH(CH2)1-2-4-fluorophenyl, —NH-pyridin-3-yl, —NHCH2-pyridin-4-yl, —NHCH2-2-hydroxypyridin-3-yl, —NHCH2-piperidin-4-yl, phenyl, thiophenyl, imidazolyl, oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, and pyrrolidin-2-one, wherein the oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, and pyrrolidin-2-one are each optionally substituted by C1-4alkyl, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl.
Embodiment 24. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is —NR5C(O)R6, wherein

    
    
        R5 is hydrogen or C1-4alkyl;
        R6 is hydrogen, C1-4alkyl, C1-4alkoxy, amino, C3-6cycloalkyloxy, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
        
            the C1-4alkyl, C1-4alkoxy, amino and C3-6cycloalkyloxy are each optionally substituted by 1-2 substituents independently selected from halo, hydroxyl, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NH2, C1-4alkylamino, —NHC(O)OC(CH3)3, pyrrolidinyl, piperidinyl, morpholinyl, and pyridinyl, wherein the pyrrolidinyl, piperidinyl, morpholinyl, or pyridinyl are each optionally substituted by hydroxy, C1-4alkyl, or —C(O)OC(CH3)3);
            the C5-6heteroaryl is optionally substituted with 1-2 substituents independently selected from hydroxyl and C1-4alkyl; and
            the C3-6cycloalkyl or C4-6heterocycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, methyl, trifluoromethyl, —CH2OCH3, —CH2NHC(O)(O)C(CH3)3, —C(O)(O)C(CH3)3, and —C(O)NH2.
        
        
    
    


Embodiment 25. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is —NHC(O)R6, wherein R6 is selected from hydrogen, methyl, ethyl propyl, isopropyl, butyl, isobutyl, tert-butyl, —(CH2)NH2, —(CH2)2NH2, —(CH2)3NH2, —CH2C(CH3)2NH2, —CH(CH3)NH2, —C(CH3)2NH2, —CH2N(CH3)2, —(CH2)2NHC(O)OC(CH3)3, —(CH2)-piperidin-4-yl, —CH2-2-hydroxypiperidin-3-yl, —(CH2)-pyrrolidin-3-yl, —CH2-(1-tert-butoxycarbonyl)pyrrolidin-3-yl, —(CH2)2-3-morpholinyl, —(CH2)-pyridin-3-yl, —(CH2)2OH, —C(CH3)2CH2OH, —CH(OH)CH2OH, —(CH2)2OCH3; —OCH3, —OCH2CH3, —OCH2CH2CH3, —OCH(CH3)2, —OCH(CH3)(CH2CH3), 1-methylcycopropoxy, —O(CH2)2F, —OC(CH3)2NH2, —OCH2C(CH3)2NH2, —O(CH2)2OCH3, —O(CH2)2—NHC(O)OC(CH3)3, —OCH2C(CH3)2—NHC(O)OC(CH3)3, —NH2, —NH(CH3), —NHCH(CH3)2, —N(CH3)2, and —N(CH3)CH(CH3)2, and —NH-pyridin-3-yl.
Embodiment 26. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is —NHC(O)R6, wherein R6 is selected from thiazolyl, pyridinyl, cyclopropyl, cyclobutyl, azetidinyl, pyrrolidinyl, pyrrolidinyl, piperidinyl, and oxetanyl, each of which is independently optionally substituted with 1-2 substituents independently selected from fluoro, cyano, hydroxy, C1-4alkyl, trifluoromethyl, —CH2NHC(O)OC(CH3)3, —C(O)NH2, —CH2—O—(CH3), and —C(O)OC(CH3)3 
Embodiment 27. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is —NHS(O)2R8, wherein R8 is C1-4alkyl or C1-4alkylamino.
Embodiment 28. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein R0 is —NHS(O)2R8, wherein R8 is methyl, isopropyl, methylamino or dimethylamino.
Embodiment 29. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein -L3R0 is selected from chloro, bromo, nitro, —NHC(O)OCH(CH3)2, —N(CH2CH3)C(O)OCH(CH3)2, —NHC(O)OCH3, —NHC(O)N(CH3)2, phenyl, and thiophen-3-yl.
Embodiment 30. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein -L3R0 is selected from *NH—C(O)CH(CH3)2, *NH—C(O)-cyclopropyl, *NH—C(O)O-cyclopropyl, *NH—C(O)-cyclobutyl, wherein the cyclopropyl and cyclobutyl are each independently optionally substituted by a substituent independently selected from cyano, halo and C1-4alkyl.
Embodiment 31. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein -L3R0 is —NHC(O)OCH(CH3)2, —NHC(O)OCH2CH3, —NHC(O)OCH3, nitro,




Embodiment 32. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1 to 20, wherein -L3R0 is —NHC(O)OCH(CH3)2.
Embodiment 33. A compound of the formula I, or a pharmaceutically acceptable salt, or stereoisomer thereof; according to Embodiments 1, wherein the compound is selected from:

    
    
        propan-2-yl N-{2-[2-chloro-5-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-{2-[3-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-(2-{2-chloro-5-[(3,3-difluoropyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-(2-{3-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-[2-(3-{[ethyl(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        propan-2-yl N-{2-[3-(pyrazine-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-{2-[3-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-[2-(5-{[ethyl(methyl)carbamoyl]amino}-2-fluorophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        propan-2-yl N-(2-{3-[(ethoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-{2-[3-(1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-{2-[2-fluoro-5-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-{2-[3-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-[2-(3-{[methoxy(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}-3-fluoroimidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-(2-{3-[(diethylcarbamoyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-(2-{2-fluoro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-{2-[3-(5-chlorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-[2-(2-fluoro-5-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        propan-2-yl N-(2-{3-[(dimethylcarbamoyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
        propan-2-yl N-[2-(3-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        propan-2-yl N-{2-[3-(2,4-dimethyl-1,3-oxazole-5-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
        propan-2-yl N-[2-(3-{[(2-methoxyethoxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
        methyl N-[4-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)phenyl]carbamate;
        N-{4-chloro-3-[6-(4-fluorophenyl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide;
        N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
        methyl N-(4-{2-[2-chloro-5-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}phenyl)carbamate;
        N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide;
        N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
        N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}-5-methylfuran-2-carboxamide;
        N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran-2-carboxamide;
        2-methoxyethyl N-[4-chloro-3-(6-{4-[(methoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-2-yl)phenyl]carbamate;
        N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran-2-carboxamide;
        2-methoxyethyl N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}carbamate;
        2-methoxyethyl N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
        2-methoxyethyl N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
        ethyl N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
        N-(4-chloro-3-{6-chloroimidazo[1,2-a]pyrimidin-2-yl}phenyl)furan-2-carboxamide;
        N-(4-chloro-3-{3-fluoro-6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
        propan-2-yl N-[2-(2-fluoro-5-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
    
    


propan-2-yl N-{2-[3-(5-methyl-1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; and

    
    
        propan-2-yl N-[2-(3-cyclopropaneamidophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate.
    
    


Embodiment 34. A pharmaceutical composition comprising a compound according to any one of Embodiments 1-33 as an active ingredient and at least one excipient.
Embodiment 35. A pharmaceutical composition comprising a compound according to any one of Embodiments 1-33 or a pharmaceutical composition according to Embodiment 34 for use as a medicament.
Embodiment 36. A compound, or a salt, tautomer or stereoisomer thereof, according to any one of Embodiments 1 to 33 or a pharmaceutical composition according to Embodiment 34 for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the disease is selected from Leishmaniasis, Human African Trypanosomiasis and Chagas disease, and wherein the compound is optionally used in combination with a second agent.
Embodiment 37. A compound for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 36, wherein the disease is Leishmaniasis.
Embodiment 38. A compound for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 36, wherein the disease is visceral Leishmaniasis
Embodiment 39. A compound for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 36, wherein the disease is Human African Trypanosomiasis.
Embodiment 40. A compound for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 36, wherein the disease is Chagas disease.
Embodiment 41. A compound, or a salt, tautomer or stereoisomer thereof, according to Embodiment 36 for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of Leishmaniasis, wherein the second agent is selected from stibogluconate, meglumine antimoniate, Amphotericin, Miltefosine and paromomycin.
Embodiment 42. A compound, or a salt, tautomer or stereoisomer thereof, according to Embodiment 36 for treating, preventing, inhibiting, ameliorating, or eradicating Human African Trypanosomiasis, wherein the second agent is selected from pentamidine, suramin, melarsoprol, eflornithine, and nifurtimox.
Embodiment 43. A compound, or a salt, tautomer or stereoisomer thereof, according to any one of Embodiment 36 for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of Chagas disease, wherein the second agent is selected from benznidazole, nifurtimox and Amphotericin.
Embodiment 44. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a disease caused by a parasite, comprising administering to a subject a therapeutically effective amount of a compound according to any one of Embodiments 1 to 33 or a composition according to Embodiment 34, wherein the disease is selected from Leishmaniasis, Human African Trypanosomiasis, and Chagas disease, and wherein the administering is optionally in combination with a second agent.
Embodiment 45. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 44, wherein the disease is Leishmaniasis.
Embodiment 46. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 44, wherein the disease is visceral Leishmaniasis
Embodiment 47. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 44, wherein the disease is Human African Trypanosomiasis.
Embodiment 48. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease according to Embodiment 44, wherein the disease is Chagas disease.
Embodiment 49. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of Leishmaniasis according to Embodiment 44, wherein the second agent selected from stibogluconate, meglumine antimoniate, Amphotericin, Miltefosine and paromomycin.
Embodiment 50. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of Human African Trypanosomiasis according to Embodiment 44, wherein the second agent selected from pentamidine, suramin, melarsoprol, eflornithine, and nifurtimox.
Embodiment 51. A method for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of Chagas disease according to Embodiment 44, wherein the second agent selected from benznidazole, nifurtimox and Amphotericin.
Embodiment 52. Use of a compound according to any one of Embodiments 1 to 33, for the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the disease is selected from Leishmaniasis, Human African Trypanosomiasis and Chagas disease.
Embodiment 53. A use of a compound according to Embodiment 52 for the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the parasitic disease is Leishmaniasis.
Embodiment 54. A use of a compound according to Embodiment 52 for the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the parasitic disease is visceral Leishmaniasis.
Embodiment 55. A use of a compound according to Embodiment 52 for the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the parasitic disease is Human African Trypanosomiasis.
Embodiment 56. A use of a compound according to Embodiment 52 for the manufacture of a medicament for treating, preventing, inhibiting, ameliorating, or eradicating the pathology and/or symptomology of a parasitic disease, wherein the parasitic disease is Chagas disease.
As used herein, the term “an optical isomer” or “a stereoisomer” refers to any of the various stereo isomeric configurations which may exist for a given compound of the present invention and includes geometric isomers. It is understood that a substituent may be attached at a chiral center of a carbon atom. The term “chiral” refers to molecules which have the property of non-superimposability on their mirror image partner, while the term “achiral” refers to molecules which are superimposable on their mirror image partner. Therefore, the invention includes enantiomers, diastereomers or racemates of the compound. “Enantiomers” are a pair of stereoisomers that are non-superimposable mirror images of each other. A 1:1 mixture of a pair of enantiomers is a “racemic” mixture. The term is used to designate a racemic mixture where appropriate. “Diastereoisomers” are stereoisomers that have at least two asymmetric atoms, but which are not mirror-images of each other. The absolute stereochemistry is specified according to the Cahn-Ingold-Prelog R-S system. When a compound is a pure enantiomer the stereochemistry at each chiral carbon may be specified by either R or S. Resolved compounds whose absolute configuration is unknown can be designated (+) or (−) depending on the direction (dextro- or levorotatory) which they rotate plane polarized light at the wavelength of the sodium D line. Certain compounds described herein contain one or more asymmetric centers or axes and may thus give rise to enantiomers, diastereomers, and other stereoisomeric forms that may be defined, in terms of absolute stereochemistry, as (R)- or (S)-.
Depending on the choice of the starting materials and procedures, the compounds can be present in the form of one of the possible isomers or as mixtures thereof, for example as pure optical isomers, or as isomer mixtures, such as racemates and diastereoisomer mixtures, depending on the number of asymmetric carbon atoms. The present invention is meant to include all such possible isomers, including racemic mixtures, diasteriomeric mixtures and optically pure forms. Optically active (R)- and (S)-isomers may be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. If the compound contains a double bond, the substituent may be E or Z configuration. If the compound contains a disubstituted cycloalkyl, the cycloalkyl substituent may have a cis- or trans-configuration. All tautomeric forms are also intended to be included.
As used herein, the terms “salt” or “salts” refers to an acid addition or base addition salt of a compound of the invention. “Salts” include in particular “pharmaceutical acceptable salts”. The term “pharmaceutically acceptable salts” refers to salts that retain the biological effectiveness and properties of the compounds of this invention and, which typically are not biologically or otherwise undesirable. In many cases, the compounds of the present invention are capable of forming acid and/or base salts by virtue of the presence of amino and/or carboxyl groups or groups similar thereto.
Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids, e.g., acetate, aspartate, benzoate, besylate, bromide/hydrobromide, bicarbonate/carbonate, bisulfate/sulfate, camphorsulfonate, chloride/hydrochloride, chlortheophyllonate, citrate, ethandisulfonate, fumarate, gluceptate, gluconate, glucuronate, hippurate, hydroiodide/iodide, isethionate, lactate, lactobionate, laurylsulfate, malate, maleate, malonate, mandelate, mesylate, methylsulphate, naphthoate, napsylate, nicotinate, nitrate, octadecanoate, oleate, oxalate, palmitate, pamoate, phosphate/hydrogen phosphate/dihydrogen phosphate, polygalacturonate, propionate, stearate, succinate, sulfosalicylate, tartrate, tosylate and trifluoroacetate salts.
Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, toluenesulfonic acid, sulfosalicylic acid, and the like. Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases.
Inorganic bases from which salts can be derived include, for example, ammonium salts and metals from columns I to XII of the periodic table. In certain embodiments, the salts are derived from sodium, potassium, ammonium, calcium, magnesium, iron, silver, zinc, and copper; particularly suitable salts include ammonium, potassium, sodium, calcium and magnesium salts.
Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like. Certain organic amines include isopropylamine, benzathine, cholinate, diethanolamine, diethylamine, lysine, meglumine, piperazine and tromethamine.
The pharmaceutically acceptable salts of the present invention can be synthesized from a basic or acidic moiety, by conventional chemical methods. Generally, such salts can be prepared by reacting free acid forms of these compounds with a stoichiometric amount of the appropriate base (such as Na, Ca, Mg, or K hydroxide, carbonate, bicarbonate or the like), or by reacting free base forms of these compounds with a stoichiometric amount of the appropriate acid. Such reactions are typically carried out in water or in an organic solvent, or in a mixture of the two. Generally, use of non-aqueous media like ether, ethyl acetate, ethanol, isopropanol, or acetonitrile is desirable, where practicable. Lists of additional suitable salts can be found, e.g., in “Remington's Pharmaceutical Sciences”, 20th ed., Mack Publishing Company, Easton, Pa., (1985); and in “Handbook of Pharmaceutical Salts Properties, Selection, and Use” by Stahl and Wermuth (Wiley-VCH, Weinheim, Germany, 2002).
Any formula given herein is also intended to represent unlabeled forms as well as isotopically labeled forms of the compounds. Isotopically labeled compounds have structures depicted by the formulas given herein except that one or more atoms are replaced by an atom having a selected atomic mass or mass number. Examples of isotopes that can be incorporated into compounds of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, and chlorine, such as 2H, 3H, 11C, 13C, 14C, 15N, 18F 31P, 32P, 35S, 36Cl, 125I respectively. The invention includes various isotopically labeled compounds as defined herein, for example those into which radioactive isotopes, such as 3H and 14C, or those into which non-radioactive isotopes, such as 2H and 13C are present. Such isotopically labelled compounds are useful in metabolic studies (with 14C), reaction kinetic studies (with, for example 2H or 3H), detection or imaging techniques, such as positron emission tomography (PET) or single-photon emission computed tomography (SPECT) including drug or substrate tissue distribution assays, or in radioactive treatment of patients. In particular, an 18F or labeled compound may be particularly desirable for PET or SPECT studies. Isotopically-labeled compounds of formula (I) can generally be prepared by conventional techniques known to those skilled in the art or by processes analogous to those described in the accompanying Examples and Preparations using an appropriate isotopically-labeled reagents in place of the non-labeled reagent previously employed.
Further, substitution with heavier isotopes, particularly deuterium (i.e., 2H or D) may afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements or an improvement in therapeutic index. It is understood that deuterium in this context is regarded as a substituent of a compound of the formula (I). The concentration of such a heavier isotope, specifically deuterium, may be defined by the isotopic enrichment factor. The term “isotopic enrichment factor” as used herein means the ratio between the isotopic abundance and the natural abundance of a specified isotope. If a substituent in a compound of this invention is denoted deuterium, such compound has an isotopic enrichment factor for each designated deuterium atom of at least 3500 (52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60% deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least 5000 (75% deuterium incorporation), at least 5500 (82.5% deuterium incorporation), at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation), at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation), or at least 6633.3 (99.5% deuterium incorporation).
Pharmaceutically acceptable solvates in accordance with the invention include those wherein the solvent of crystallization may be isotopically substituted, e.g. D2O, d6-acetone, d6-DMSO.
Compounds of the invention, i.e. compounds of formula (I) that contain groups capable of acting as donors and/or acceptors for hydrogen bonds may be capable of forming co-crystals with suitable co-crystal formers. These co-crystals may be prepared from compounds of formula (I) by known co-crystal forming procedures. Such procedures include grinding, heating, co-subliming, co-melting, or contacting in solution compounds of formula (I) with the co-crystal former under crystallization conditions and isolating co-crystals thereby formed. Suitable co-crystal formers include those described in WO 2004/078163. Hence the invention further provides co-crystals comprising a compound of formula (I).
As used herein, the term “pharmaceutically acceptable carrier” includes any and all solvents, dispersion media, coatings, surfactants, antioxidants, preservatives (e.g., antibacterial agents, antifungal agents), isotonic agents, absorption delaying agents, salts, preservatives, drug stabilizers, binders, excipients, disintegration agents, lubricants, sweetening agents, flavoring agents, dyes, and the like and combinations thereof, as would be known to those skilled in the art (see, for example, Remington's Pharmaceutical Sciences, 18th Ed. Mack Printing Company, 1990, pp. 1289-1329). Except insofar as any conventional carrier is incompatible with the active ingredient, its use in the therapeutic or pharmaceutical compositions is contemplated.
The term “a therapeutically effective amount” of a compound of the present invention refers to an amount of the compound of the present invention that will elicit the biological or medical response of a subject, for example, reduction or inhibition of an enzyme or a protein activity, or ameliorate symptoms, alleviate conditions, slow or delay disease progression, or prevent a disease, etc. In one non-limiting embodiment, the term “a therapeutically effective amount” refers to the amount of the compound of the present invention that, when administered to a subject, is effective to (1) at least partially alleviate, inhibit, prevent and/or ameliorate a condition, or a disorder or a disease (i) mediated by Plasdmodium or (ii) associated with Plasdmodium activity, or (iii) characterized by activity (normal or abnormal) of Plasdmodium or (2) reduce or inhibit the activity of Plasdmodium; or (3) reduce or inhibit the growth of Plasdmodium. In another non-limiting embodiment, the term “a therapeutically effective amount” refers to the amount of the compound of the present invention that, when administered to a cell, or a tissue, or a non-cellular biological material, or a medium, is effective to at least partially reducing or inhibiting the activity of Plasdmodium; or at least partially reducing or inhibiting the growth of Plasdmodium.
As used herein, the term “subject” refers to an animal. Typically the animal is a mammal. A subject also refers to for example, primates (e.g., humans, male or female), cows, sheep, goats, horses, dogs, cats, rabbits, rats, mice, fish, birds and the like. In certain embodiments, the subject is a primate. In yet other embodiments, the subject is a human.
As used herein, the term “inhibit”, “inhibition” or “inhibiting” refers to the reduction or suppression of a given condition, symptom, or disorder, or disease, or a significant decrease in the baseline activity of a biological activity or process.
As used herein, the term “treat”, “treating” or “treatment” of any disease or disorder refers in one embodiment, to ameliorating the disease or disorder (i.e., slowing or arresting or reducing the development of the disease or at least one of the clinical symptoms thereof).
In another embodiment “treat”, “treating” or “treatment” refers to alleviating or ameliorating at least one physical parameter including those which may not be discernible by the patient. In yet another embodiment, “treat”, “treating” or “treatment” refers to modulating the disease or disorder, either physically, (e.g., stabilization of a discernible symptom), physiologically, (e.g., stabilization of a physical parameter), or both. In yet another embodiment, “treat”, “treating” or “treatment” refers to preventing or delaying the onset or development or progression of the disease or disorder.
As used herein, a subject is “in need of” a treatment if such subject would benefit biologically, medically or in quality of life from such treatment.
As used herein, the term “a,” “an,” “the” and similar terms used in the context of the present invention (especially in the context of the claims) are to be construed to cover both the singular and plural unless otherwise indicated herein or clearly contradicted by the context.
All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g. “such as”) provided herein is intended merely to better illuminate the invention and does not pose a limitation on the scope of the invention otherwise claimed.
Any asymmetric atom (e.g., carbon or the like) of the compound(s) of the present invention can be present in racemic or enantiomerically enriched, for example the (R)—, (S)— or (R,S)— configuration. In certain embodiments, each asymmetric atom has at least 50% enantiomeric excess, at least 60% enantiomeric excess, at least 70% enantiomeric excess, at least 80% enantiomeric excess, at least 90% enantiomeric excess, at least 95% enantiomeric excess, or at least 99% enantiomeric excess in the (R)— or (S)— configuration. Substituents at atoms with unsaturated double bonds may, if possible, be present in cis- (Z)— or trans- (E)-form.
Accordingly, as used herein a compound of the present invention can be in the form of one of the possible isomers, rotamers, atropisomers, tautomers or mixtures thereof, for example, as substantially pure geometric (cis or trans) isomers, diastereomers, optical isomers (antipodes), racemates or mixtures thereof.
Any resulting mixtures of isomers can be separated on the basis of the physicochemical differences of the constituents, into the pure or substantially pure geometric or optical isomers, diastereomers, racemates, for example, by chromatography and/or fractional crystallization.
Any resulting racemates of final products or intermediates can be resolved into the optical antipodes by known methods, e.g., by separation of the diastereomeric salts thereof, obtained with an optically active acid or base, and liberating the optically active acidic or basic compound. In particular, a basic moiety may thus be employed to resolve the compounds of the present invention into their optical antipodes, e.g., by fractional crystallization of a salt formed with an optically active acid, e.g., tartaric acid, dibenzoyl tartaric acid, diacetyl tartaric acid, di-O,O′-p-toluoyl tartaric acid, mandelic acid, malic acid or camphor-10-sulfonic acid. Racemic products can also be resolved by chiral chromatography, e.g., high pressure liquid chromatography (HPLC) using a chiral adsorbent.
Furthermore, the compounds of the present invention, including their salts, can also be obtained in the form of their hydrates, or include other solvents used for their crystallization. The compounds of the present invention may inherently or by design form solvates with pharmaceutically acceptable solvents (including water); therefore, it is intended that the invention embrace both solvated and unsolvated forms. The term “solvate” refers to a molecular complex of a compound of the present invention (including pharmaceutically acceptable salts thereof) with one or more solvent molecules. Such solvent molecules are those commonly used in the pharmaceutical art, which are known to be innocuous to the recipient, e.g., water, ethanol, and the like. The term “hydrate” refers to the complex where the solvent molecule is water.
The compounds of the present invention, including salts, hydrates and solvates thereof, may inherently or by design form polymorphs.
General Processes for Preparing Compounds of the Invention
The present invention also includes processes for the preparation of compounds of the invention. In the reactions described, it can be necessary to protect reactive functional groups, for example hydroxy, amino, imino, thio or carboxy groups, where these are desired in the final product, to avoid their unwanted participation in the reactions. Conventional protecting groups can be used in accordance with standard practice, for example, see T. W. Greene and P. G. M. Wuts in “Protective Groups in Organic Synthesis”, John Wiley and Sons, 1991.
Typically, the compounds of formula (I) can be prepared according to Schemes 1A, 2 and 3 provided infra., where the variables: R0, R1, R3, R4, R7 and others are as defined in the Summary of the Invention. The following reaction schemes are given to be illustrative, not limiting, descriptions of the synthesis of compounds of the invention. Detailed descriptions of the synthesis of compounds of the Invention are given in the Examples, infra.




The Imidazopyrimidine analog having a *-phenylene- or *-heteroaaromatic linker (if) can be synthesized according to Scheme 1A.

    A. Bromination of -alkyl ketone with bromine in acetic acid;
    B. Condensation of 1c with 5-Bromopyrimidine amine with ethanol at elevated temperatures in the presence or absence of acid leading to formation of imidazopyrimidine 1d;
    C. Reduction of nitro reduction to the corresponding amine using tin chloride and ethanol as solvent. This reduction can also be achieved by other metals such as Fe, HCl o zinc. Alternatively, this reduction can be carried out by catalytic hydrogenation using Pd, Pt, or raney-Ni using hydrogen gas as atmosphere;
    D. Suzuki coupling; and
    E. Coupling of the amine to form an amide either by using an acid chloride in pyridine as solvent or direct coupling of carboxylic acid using a suitable peptide coupling agent such as HATU in presence of amine base such as Et3N, DIEA (Hunig's base). Carbamates can be formed either by reaction with RxOCOCl or activated carbonates such as 4-nitophenyl activated carbonates in the presence of base such as pyridine or DIEA. Sulfonamides are formed by the reaction of sulfonyl chloride with aniline in the presence of base such as pyridine. Ureas are formed by reaction of amine with isocyanate or carbamoyl chloride in DMF with or without base.






    A. Reduction of nitro group using Pd—C in hydrogen atmosphere;
    B. Formation of carbamate by reaction with chloroformate or carbonic anhydride. Alternatively, amides can be formed by reaction with acid chloride or carboxylic acid in the presence of coupling agent;
    C. Condensation of ketobromide (1-c) with 2-b with acetone at elevated temperatures in the presence or absence of acid leading to formation of imidazopyrimidine 2-c;
    D. Reduction of nitro reduction to the corresponding amine using tin chloride and ethanol as solvent. This reduction can also be achieved by other metals such as Fe, HCl o zinc. Alternatively, this reduction can be carried out by catalytic hydrogenation using Pd, Pt, or raney-Ni using hydrogen gas as atmosphere; and
    E. Coupling of the amine to form a amide either by using an acid chloride in pyridine as solvent or direct coupling of carboxylic acid using a suitable peptide coupling agent such as HATU in presence of amine base such as Et3N, DIEA (Hunig's base). Carbamates can be formed either by reaction with RxOCOCl or activated carbonates such as 4-nitophenyl activated carbonates in the presence of base such as pyridine or DIEA. Sulfonamides are formed by the reaction of sulfonyl chloride with aniline in the presence of base such as pyridine. Ureas are formed by reaction of amine with isocyanate or carbamoyl chloride in DMF with or without base.






    A. Introduction of halogen (F, Cl, Br or I) by reacting with suitable halogenating agents such as selectfluor, N-chlorosuccinimide, N-bromosuccinimide and N-iodosuccinimideor any halogenation agents in the presence of solvents such as chloroform, dichloromethane, acetic acid and acetonitrile.


The invention further includes any variant of the present processes, in which an intermediate product obtainable at any stage thereof is used as starting material and the remaining steps are carried out, or in which the starting materials are formed in situ under the reaction conditions, or in which the reaction components are used in the form of their salts or optically pure material.
Compounds of the invention and intermediates can also be converted into each other according to methods generally known to those skilled in the art.
Compounds of the invention are useful in the treatment and/or prevention of infections such as Leishmaniasis, Human African Trypanosomiasis, or Chagas disease.
Leishmaniasis is a disease caused by protozoan parasites that belong to the genus Leishmania, typically caused by Leishmania donovani. Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, or Leishmania major, and more typically caused by Leishmania donovani. These parasites are typically transmitted by the bite of an infected female sandfly from Phlebotomus or Lutzomyia genus.
Leishmaniasis is mostly a disease of the developing world, and is rarely known in the developed world outside a small number of cases, mostly in instances where troops are stationed away from their home countries. Leishmaniasis can be transmitted in many tropical and subtropical countries, and is found in parts of about 88 countries. Approximately 350 million people live in these areas. The settings in which leishmaniasis is found range from rainforests in Central and South America to deserts in West Asia and the Middle East. It affects as many as 12 million people worldwide, with 1.5-2 million new cases each year.[19] The visceral form of leishmaniasis has an estimated incidence of 500,000 new cases and 60,000 deaths each year. More than 90 percent of the world's cases of visceral leishmaniasis are in India, Bangladesh, Nepal, Sudan, and Brazil. Kabul is estimated as the largest center of cutaneous leishmaniasis in the world, with approximately 67,500 cases as of 2004.
There are four main forms of Leishmaniasis. Cutaneous leishmaniasis is the most common form of leishmaniasis. Visceral leishmaniasis, also called kala-azar, is the most serious form in which the parasites migrate to the vital organs. Visceral leishmaniasis is caused by the parasite Leishmania donovani, and is potentially fatal if untreated.
Currently, no vaccines are in routine use. The two main therapies for visceral leishmaniasis are the antimony derivatives sodium stibogluconate (Pentostam®) and meglumine antimoniate (Glucantim®). Sodium stibogluconate has been used for about 70 years and resistance to this drug is a growing problem. In addition, the treatment is relatively long and painful, and can cause undesirable side effects. Amphotericin (AmBisome) is now the treatment of choice. Miltefosine (Impavido), and paromomycin are the other treatment alternatives. These drugs are known to produce a definitive cure in >90% of patients. Amphotericin (AmBisome) is expansive and has to be given intravenously; it is not affordable to most patients affected. Paromomycin, although affordable, requires intramuscular injections for 3 weeks; compliance is a major issue. Miltefosine is an oral drug and has shown to be more effective and better tolerated than other drugs. However, there are problems associated with the use of miltefosine that arise from its teratogenicity and pharmacokinetics. Miltefosine was shown to be much slower eliminated from the body and was still detectable five months after the end of treatment. The presence of subtherapeutic miltefosine concentrations in the blood beyond five months after treatment might contribute to the selection of resistant parasites and, moreover, the measures for preventing the teratogenic risks of miltefosine must be reconsidered. This led to some reluctance to taking Miltefosine by affected populations.
The Drugs for Neglected Diseases Initiative is actively facilitating the search for novel therapeutics. Our invention meets that need.
Human African trypanosomiasis (HAT), also known as African sleeping sickness, is a vector-borne parasitic disease caused by the protozoa Trypanosoma brucei. There are two subspecies that infect humans, T.b. gambiense and T.b. rhodesiense, with the former accounting for over 95% of reported cases and the latter accounting for the remaining reported cases. The parasites are transmitted to humans by tsetse fly (Glossina genus) bites which have acquired their infection from human beings or from animals harboring the human pathogenic parasites.
The disease has been recorded as occurring in 36 countries, all in subtropical and equatorial Africa. It is endemic in southeast Uganda and western Kenya. In 1995, the WHO estimated that 300,000 people were afflicted with the disease. In its 2001 report, the WHO set the figure of people at risk of infection at 60 million, of which only 4 to 5 million had access to any kind of medical monitoring. In 2006, the WHO estimated that about 70,000 people could have the disease, and many cases are believed to go unreported. About 48,000 people died of sleeping sickness in 2008. Public health efforts in prevention and the eradication of the tsetse fly population have proven to be successful in controlling the spread of the disease; under 10,000 new cases were reported in 2009 according to WHO figures, which represents a huge decrease from the estimated 300,000 new cases in 1998.
African trypanosomiasis symptoms occur in two stages. In the first stage, known as the haemolymphatic phase, the trypanosomes multiply in subcutaneous tissues, blood and lymph. The haemolymphatic phase is characterized by bouts of fever, headaches, joint pains and itching. In the second stage, the neurological phase, the parasites cross the blood-brain barrier to infect the central nervous system. It is in this stage when more obvious signs and symptoms of the disease appear: changes of behaviour, confusion, sensory disturbances and poor coordination. Disturbance of the sleep cycle, which gives the disease its name, is an important feature of the second stage of the disease. Without treatment, the disease is invariably fatal, with progressive mental deterioration leading to coma, systemic organ failure, and death.
Four drugs are registered for the treatment of sleeping sickness. The protocol depends on the stage of the disease. The current standard treatment for first-stage disease is intravenous or intramuscular pentamidine (for T.b. gambiense), or intravenous suramin (for T.b. rhodesiense). The current standard treatment for second-stage disease is: Intravenous melarsoprol, or interavenous melarsoprol in combination with oral nifurtimox, intravenous eflornithine only or eflornithine in combination with nifurtimox. All of the drugs have undesirable or sometime serious side effects. For example, 3-10% of patients those injected with Melarsoprol (Arsobal), an organoarsenical, developed reactive encephalopathy (convulsions, progressive coma, or psychotic reactions), and 10-70% of such cases result in death. There remains a need for new therapy.
Chagas disease, also called American trypanosomiasis, is a tropical parasitic disease caused by the flagellate protozoan Trypanosoma cruzi. T. cruzi is commonly transmitted to humans and other mammals by the blood-sucking “kissing bugs” of the subfamily Triatominae (family Reduviidae).
Chagas disease is contracted primarily in the Americas. It is endemic in twenty one Central and Latin American countries; particularly in poor, rural areas of Mexico, Central America, and South America. Large-scale population movements from rural to urban areas of Latin America and to other regions of the world have increased the geographic distribution of Chagas disease, and cases have been noted in many countries, particularly in Europe. Rarely, the disease has been found in the Southern part of the United States.
Each year, an estimated 10 to 15 million people across the world are infected with Chagas disease, most of whom do not know they are infected. Every year, 14,000 people die as a consequence of the disease. In Central and South America, Chagas kills more people than any other parasite-borne disease, including malaria. By applying published seroprevalence figures to immigrant populations, CDC estimates that more than 300,000 persons with Trypanosoma cruzi infection live in the United States. Most people with Chagas disease in the United States acquired their infections in endemic countries.
Chagas disease has an acute and a chronic phase. If untreated, infection is lifelong. Acute Chagas disease occurs immediately after infection, may last up to a few weeks or months, and parasites may be found in the circulating blood. Infection may be mild or asymptomatic. There may be fever or swelling around the site of inoculation (where the parasite entered into the skin or mucous membrane). Rarely, acute infection may result in severe inflammation of the heart muscle or the brain and lining around the brain. The initial acute phase is responsive to antiparasitic treatments, with 60-90% cure rates. Following the acute phase, most infected people enter into a prolonged asymptomatic form of disease (called “chronic indeterminate”) during which few or no parasites are found in the blood. During this time, most people are unaware of their infection. Many people may remain asymptomatic for life and never develop Chagas-related symptoms. However, an estimated 20-30% of infected people will develop debilitating and sometimes life-threatening medical problems over the course of their lives.
The symptoms of Chagas disease vary over the course of an infection. In the early, acute stage, symptoms are mild and usually produce no more than local swelling at the site of infection. The initial acute phase is responsive to antiparasitic treatments, with 60-90% cure rates. After 4-8 weeks, individuals with active infections enter the chronic phase of Chagas disease that is asymptomatic for 60-80% of chronically infected individuals through their lifetime.
There is no vaccine against Chagas disease. Treatment for Chagas disease focuses on killing the parasite and managing signs and symptoms.
During the acute phase of Chagas disease, the drugs currently available for treatment are benznidazole and nifurtimox. Once Chagas disease reaches the chronic phase, medications aren't effective for curing the disease. Instead, treatment depends on the specific signs and symptoms. However, problems with these current therapies include their diverse side effects, the length of treatment, and the requirement for medical supervision during treatment. Resistance to the two frontline drugs has already occurred. The antifungal agent Amphotericin b has been proposed as a second-line drug, but this drug is costly and relatively toxic.
In accordance with the foregoing, the present invention further provides a method for preventing or treating Leishmaniasis, Chaga disease or Human African Trypanosomiasis in a subject in need of such treatment, which method comprises administering to said subject a therapeutically effective amount of a compound selected from Formula I or a pharmaceutically acceptable salt thereof. The required dosage will vary depending on the mode of administration, the particular condition to be treated and the effect desired.
In one embodiment of the method of the invention, the disease being treated is Leishmaniasis caused by the parasites Leishmania donovani, Leishmania infantum, Leishmania braziliensis, Leishmania panamensis, Leishmania guayanensis, Leishmania amazonensis, Leishmania mexicana, Leishmania tropica, Leishmania major. In one variation of the above embodiment, the disease being treated is Visceral leishmaniasis, caused by the parasite Leishmania donovani. 
In another embodiment of the method of the invention, the disease being treated is Human African Trypanosomiasis caused by a protozoa belonging to the species Trypanosoma brucei. In one embodiment, the protozoa is Trypanosoma brucei gambiense. In another embodiment, the protozoa is Trypanosoma brucei rhodesiense. 
In yet another embodiment of the method of the invention, the disease being treated is Chagas disease (also call American Trypanosomiasis) caused by protozoa Trypanosoma cruzi. 
In general, compounds of the invention will be administered in therapeutically effective amounts via any of the usual and acceptable modes known in the art, either singly or in combination with one or more therapeutic agents. A therapeutically effective amount may vary widely depending on the severity of the disease, the age and relative health of the subject, the potency of the compound used and other factors. In general, satisfactory results are indicated to be obtained systemically at daily dosages of from about 0.03 to 2.5 mg/kg per body weight. An indicated daily dosage in the larger mammal, e.g. humans, is in the range from about 0.5 mg to about 100 mg, conveniently administered, e.g. in divided doses up to four times a day or in retard form. Suitable unit dosage forms for oral administration comprise from ca. 1 to 50 mg active ingredient.
Compounds of the invention can be administered as pharmaceutical compositions by any conventional route, in particular enterally, e.g., orally, e.g., in the form of tablets or capsules, or parenterally, e.g., in the form of injectable solutions or suspensions, topically, e.g., in the form of lotions, gels, ointments or creams, or in a nasal or suppository form. Pharmaceutical compositions comprising a compound of the present invention in free form or in a pharmaceutically acceptable salt form in association with at least one pharmaceutically acceptable carrier or diluent can be manufactured in a conventional manner by mixing, granulating or coating methods. For example, oral compositions can be tablets or gelatin capsules comprising the active ingredient together with a) diluents, e.g., lactose, dextrose, sucrose, mannitol, sorbitol, cellulose and/or glycine; b) lubricants, e.g., silica, talcum, stearic acid, its magnesium or calcium salt and/or polyethyleneglycol; for tablets also c) binders, e.g., magnesium aluminum silicate, starch paste, gelatin, tragacanth, methylcellulose, sodium carboxymethylcellulose and or polyvinylpyrrolidone; if desired d) disintegrants, e.g., starches, agar, alginic acid or its sodium salt, or effervescent mixtures; and/or e) absorbents, colorants, flavors and sweeteners. Injectable compositions can be aqueous isotonic solutions or suspensions, and suppositories can be prepared from fatty emulsions or suspensions. The compositions may be sterilized and/or contain adjuvants, such as preserving, stabilizing, wetting or emulsifying agents, solution promoters, salts for regulating the osmotic pressure and/or buffers. In addition, they may also contain other therapeutically valuable substances. Suitable formulations for transdermal applications include an effective amount of a compound of the present invention with a carrier. A carrier can include absorbable pharmacologically acceptable solvents to assist passage through the skin of the host. For example, transdermal devices are in the form of a bandage comprising a backing member, a reservoir containing the compound optionally with carriers, optionally a rate controlling barrier to deliver the compound to the skin of the host at a controlled and predetermined rate over a prolonged period of time, and means to secure the device to the skin. Matrix transdermal formulations may also be used. Suitable formulations for topical application, e.g., to the skin and eyes, are preferably aqueous solutions, ointments, creams or gels well-known in the art. Such may contain solubilizers, stabilizers, tonicity enhancing agents, buffers and preservatives.
Compounds of the invention can be administered in therapeutically effective amounts in combination with one or more therapeutic agents (pharmaceutical combinations). In one embodiment, the compound of the invention is administered with the known treatment drugs. For example, for the treatment of Leishmaniasis, compound of the invention may be used in combination with stibogluconate, meglumine antimoniate, Amphotericin, Miltefosine and paromomycin. For the treatment of Human African Trypanosomiasis, the compound of the invention may be used in combination with pentamidine, suramin, melarsoprol, eflornithine, and nifurtimox. For the treatment of Chagas disease, the compound of the invention may be used in combination with benznidazole, nifurtimox and Amphotericin.
Where the compounds of the invention are administered in conjunction with other therapies, dosages of the co-administered compounds will of course vary depending on the type of co-drug employed, on the specific drug employed, on the condition being treated and so forth.
The invention also provides for a pharmaceutical combinations, e.g. a kit, comprising a) a first agent which is a compound of the invention as disclosed herein, in free form or in pharmaceutically acceptable salt form, and b) optionally co-agent. The kit can comprise instructions for its administration.
The terms “co-administration” or “combined administration” or the like as utilized herein are meant to encompass administration of the selected therapeutic agents to a single patient, and are intended to include treatment regimens in which the agents are not necessarily administered by the same route of administration or at the same time.
The term “pharmaceutical combination” as used herein means a product that results from the mixing or combining of more than one active ingredient and includes both fixed and non-fixed combinations of the active ingredients. The term “fixed combination” means that the active ingredients, e.g. a compound of Formula I and a co-agent, are both administered to a patient simultaneously in the form of a single entity or dosage. The term “non-fixed combination” means that the active ingredients, e.g. a compound of Formula I and a co-agent, are both administered to a patient as separate entities either simultaneously, concurrently or sequentially with no specific time limits, wherein such administration provides therapeutically effective levels of the 2 compounds in the body of the patient. The latter also applies to cocktail therapy, e.g. the administration of 3 or more active ingredients.
Biological Assays
Leishmania donovani Axenic Amastigote Proliferation Assay
Leishmania donovani axenic amastigote parasites are grown at 37° C., 5% CO2 in media made of RPMI 1640, 4 mM L-glutamine, 20% heat inactivated FBS, 100 units/ml of penicillin and 100 μg/ml of streptomycin, 23 μM Folic Acid, 100 μM Adenosine, 22 mM D-glucose, 25 mM MES. The pH of media is adjusted to 5.5 at 37° C. using HCl. 20 μL of media is first dispensed into 384 well plates and 100 mL of the compounds of invention in DMSO are added to the plate wells. At the same time control compounds and DMSO are added to plates to serve as the positive and negative controls, respectively. 40 μL of parasite culture (9600 parasites) are then added to the plate wells. The plates are then placed into incubators. After 2 day incubation, 20 μL of Cell TiterGlo (Promega) is added to the plate wells. The luminescence signal of each well is measured using the Envision reader (Perkin Elmer). The percentage inhibition of 50%, EC50, is calculated for each of the compounds.
Compounds of the invention have an EC50 of 25 μM or less, typically less than 5 μm, and about half of the compounds have an EC50 below 1 μM. Selected compounds of the invention can significantly delay the proliferation of L. donovani. The inhibitory efficacy of the compounds of the invention against L. donovani axenic amastigotes in vitro is provided in Table I.
Assay for Proliferation of Leishmania Parasites
The activity of a compound according to the present invention for inhibition of parasitemai can be assessed by the parasite proliferation assay. The assay measures the increase in the parasite number in the assayed plate well using a DNA intercalating dye, SYBR Green I® dye (INVITROGEN) to stain Leishmania cell nuclei. It is understood that the assays illustrate the invention without in any way limiting the scope of the invention.
L. donovani HU3 strain is propagated by infecting BALB/c mice through tail vein injection with 107 Leishmania parasites. Infected mice are allowed to develop infection during 9-11 weeks post-infection. During this time, the parasites accumulate in the infected mouse spleens to large numbers, and the infected mice serve as the source of parasites for the in vitro measurement of compound efficacies. To assay a compound for anti-leishmanial activity, peritoneal macrophages isolated from non-infected BALB/c mice are seeded into 384-well plates at density 2×104 macrophages per well in 25 mL of medium (RPM11640, 10% fetal serum albumin, 10 mM HEPES, 1 mM sodium pyruvate, 1% Pen/Strep). Subsequently, the seeded plates are placed into an incubator set to maintain 37° C. temperature and atmosphere with 5% CO2. The next day, Leishmania parasites are isolated from the spleens of mice infected for 9-11 weeks and 4×105 isolated parasites in 10 mL of the above media are added to each plate well. Plates are then returned into incubators and infection is allowed to proceed for 24 hours. After the infection of macrophages is completed, 5 mL of compounds of the invention in the above medium, which also contains 5% DMSO, are added to plate wells containing infected macrophages. At the same time control compounds (miltefosine and amphotericin B) and DMSO are added to plates to serve as the positive and negative controls, respectively. After the compound addition, the plates are returned into incubator and cells infected with parasites are cultured for 5 days. At the end of cultivation, 40 mL of 8% paraformaldehyde is added to plate wells and incubated for 15 min at room temperature. Following the incubation, the paraformaldehyde from plate wells is aspirated, and 40 mL of PBS containing 0.2% Triton X-100 is added to wells. After 15 min incubation, the solution is aspirated from wells again, and replaced with SybrGreen Dye solution in PBS (1:125,000 dilution). Infected cells are imaged with Evotec Opera high-content microscope, and the number of parasites in well is determined by counting parasite nuclei visualized by staining with SybrGreen dye. The percentage inhibition of 50%, EC50, is calculated for each compound.
Compounds of the invention have an EC50 of typically less than 10 μM; about 50% of the compounds analyzed have an EC50 of less than 1 μm. Selected compounds have EC50 less than 200 nM. The data shows the compounds of the invention can significantly delay the proliferation of L. donovani. 
The inhibitory efficacy of the compounds of the invention against proliferation of L. donovani in mouse peritoneal macrophages is provided in Table I.
Assay for Proliferation of Kinetoplastid Parasite Trypanosoma brucei. 
The proliferation is quantified by the addition of Cell Titer Glo (Promega®) a luminescent cell viability assay that measures the number of viable cells in culture based on the quantification of cellular ATP amount, which is an indicator of metabolically active cells.
The following assay illustrates the invention without in any way limiting the scope of the invention. This parasite proliferation assay measures the increase in parasite growth using an assay that measures ATP activity, Cell Titer Glo®.
Trypanosoma brucei Lister 427 strain is grown in HMI-9 Trypanosome media for T. brucei bloodstream form. 30 μl of HMI-9 media is dispensed into 384 well assay plates. 200 nl of compounds of the invention (in DMSO), including anti-trypanosome controls (Pentamidine and suramin), are then transferred into the assay plates, as well as DMSO alone to serve as a negative control for inhibition. Then 25 μl of a suspension of T. brucei culture in HMI-9 media is dispensed into the assay plates. The final concentration of parasites in culture corresponds to 1.7% of 0.5 uM ATP activity with Cell Titer Glo® in HMI-9 media. The plates are placed in a 37° C. incubator for 48 hours in an atmospheric environment containing 5% CO2. 40 μl of Cell Titer Glo® is dispensed into the plates. The plates are then read for luminescence. The percentage inhibition of 50%, EC50, is calculated for each compound.
Compounds of the invention have an EC50 of 5 μM or less, typically less than 1 μM, and more typically less than 200 nM. The data supports that compounds of the invention can significantly delay the proliferation of T. brucei. 
The inhibitory efficacy of the compounds of the invention against the proliferation of T. brucei is provided in Table I, infra.
Assay for Proliferation of Kinetoplastid Parasite Trypanosoma cruzi. 
Compounds of the invention can be assayed to measure their capacity to inhibit proliferation of kinetoplastid parasite Trypanosoma cruzi. The screening procedure is for identifying compounds with inhibitor activity against Trypanosoma cruzi amastigotes cultured in 3T3 fibroblast cells. The assay is done using the mammalian stage (amastigotes) of T. cruzi that replicates in the intracellular space of host cells. The host cells are initially infected with the culture-derived trypomastigotes that rapidly invade and then divide as amastigotes. The protocol uses the Tulahuen strain of T. cruzi that has been engineered to express the E. coli beta-galactosidase gene (Lac-Z) (Antimicr. Agents Chemoth. 40:2592, 1996). This allows for a colorimetric readout by using the substrate CPRG and an absorbance plate reader.
3T3 fibroblast cells are re-suspended in RPMI-1640 medium without phenol red medium supplemented with 10% FBS (heat inactivated), 100 μg/ml penicillin, and 100 μg/ml streptomycin. Forty μL of suspension (1,000 cells) is dispensed into 384-well plates and incubated overnight at 37° C. temperature and in atmosphere containing 5% CO2. The following day, 100 nL of compounds of the invention in DMSO are added to plate wells containing 3T3 cells. At the same time control compounds (benznidazole and nifurtimox) and DMSO are added to plates to serve as the positive and negative controls, respectively. After that, 10 μL of media containing 10,000 T. cruzi trypomastigotes are added to each plate well and plates are placed back into incubators. After 6 day incubation, 10 μL of reagent solution (0.6 mM CPRG, 0.6% NP-40 in PBS) is added to plates and incubated at room temperature for 2 hours. Absorbance is then measured on SpectraMax Gemini fluorimeter to determine relative number of T. cruzi cells present in each plate well. The percentage inhibition of 50%, EC50, is calculated for each compound.
Of the three compounds assayed, the EC50s are at the sub-micromolar level. Compound 1, Propan-2-yl N-{2-[2-chloro-5-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate, has an EC50 of 30 nM; Compound 2, propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate, has an EC50 of 243 nM; and Compound 3, propan-2-yl N-{2-[3-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate, has an EC50 of 510 nM. The data shows selected compounds of the invention can significantly delay the proliferation of T. Cruzi. The inhibitory efficacy of the compounds of the invention against proliferation of T. cruzi is reported in Table I below.







TABLE I







Inhibitory efficacy of seleced compounds of the invention aganist


proliferation of L. donovani, T cruzi or T. brucei












L. donovani
L. donavani




Example
amastigotes
Macrophage
T cruzi
T. brucei


No.
EC50 (μM)
EC50 (μM)
EC50 (μM)
EC50 (μM)














1
0.088
0.243
0.03
n.d.


2
0.096
0.268
0.243
n.d.


3
0.24
0.43
0.51
n.d.


4
1.34
2.22
n.d.
2.363


5
1.08
4
n.d.
n.d.


6
22.3
9.2
n.d.
0.6645


7
2.53
1.86
n.d.
n.d.


8
1.59
4.7
n.d.
n.d.


9
2.48
1.32
n.d.
0.1913


10
2.98
2.36
n.d.
0.2309


11
3.8
5
n.d.
0.6594


12
n.d.
n.d.
n.d.
0.06557


13
1.72
0.81
n.d.
0.1806


14
4.2
3.2
n.d.
0.4787


15
1.5
2.95
n.d.
n.d.


16
>25
14
n.d.
1.64


17
0.41
0.35
n.d.
n.d.


18
0.41
0.172
n.d.
0.05679


19
19.1
46.9
n.d.
n.d.


20
13.4
7.9
n.d.
2.002


21
1.97
1.05
n.d.
0.1867


22
1.24
0.53
n.d.
0.3843


23
7.3
24.7
n.d.
n.d.


24
0.0199
0.057
n.d.
0.008451


25
0.054
0.1
n.d.
0.02753


26
0.057
0.104
n.d.
0.02335


27
0.035
0.11
n.d.
0.589


28
0.028
0.129
n.d.
0.009364


29
0.036
0.152
n.d.
n.d.


30
0.101
0.172
n.d.
0.08677


31
0.169
0.243
n.d.
0.06766


32
0.118
0.33
n.d.
0.1863


33
0.37
0.66
n.d.
0.1883


34
0.258
0.75
n.d.
0.4925


35
0.73
0.87
n.d.
1.121


36
0.56
1.28
n.d.
n.d.


37
0.61
3.01
n.d.
0.1966


38
5.9
15.6
n.d.
1.803


39
>3.4
0.18
n.d.
0.07449


40
n.d.
n.d.
n.d.
0.185


41
n.d.
n.d.
n.d.
4.396


42
n.d.
n.d.
n.d.
1.697





n.d. means not determined.






EXAMPLES
The present invention is further exemplified, but not to be limited, by the following examples and intermediates that illustrate the preparation of compounds of the invention.
It is understood that if there appears to be a discrepancy between the name and structure of a particular compound, the structure is to be considered correct as the compound names were generated from the structures.
Temperatures are given in degrees Celsius. If not mentioned otherwise, all evaporations are performed under reduced pressure, typically between about 15 mm Hg and 100 mm Hg (=20-133 mbar). The structure of final products, intermediates and starting materials is confirmed by standard analytical methods, e.g., microanalysis and spectroscopic characteristics, e.g., MS, IR, NMR. Abbreviations used are those conventional in the art.
All starting materials, building blocks, reagents, acids, bases, dehydrating agents, solvents, and catalysts utilized to synthesis the compounds of the present invention are either commercially available or can be produced by organic synthesis methods known to one of ordinary skill in the art (Houben-Weyl 4th Ed. 1952, Methods of Organic Synthesis, Thieme, Volume 21). Further, the compounds of the present invention can be produced by organic synthesis methods known to one of ordinary skill in the art as shown in the following examples.
Method for Analysis:


    
    
        Agilent G1379A Degasser
        Agilent G1312A Binary Pump
        Agilent G1315B Diode Array Detector
        Leap Technologies HTS Pal Autosampler
        Sedex 75 Evaporative Light Scattering Detector
        Waters ZQ2000 Mass Spectrometer
        HPLC Column: Thermo Accucore aQ C18 2.6 um 30×2.1 mm
        Mobile Phase: (A)H2O+0.05% TFA and (B)Acetonitrile+0.05% TFA
        Gradient: 1 mL/minute, initial 5% B for 0.1 minutes, ramp to 90% B over 2.5 minutes, then to 100% B at 2.61 and hold until 3.10 minutes, return to 5% B to at 3.15 minutes until end of run at 3.25. The column is re-equilibrated in the  ̃30 seconds between injections.

MS Scan: 180 to 800 amu in 0.4 seconds

Diode Array Detector: 214 nm-400 nm

    
    


Synthesis of Intermediates
Example 1
Synthesis of 3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chloroaniline (I-4)




Synthesis of I-2




To a solution of I-1 (30 g, 150.75 mmol, 1.00 equiv) in AcOH (250 ml) was added Br2 (18.57 g, 116.077 mmol, 0.77 equiv) in AcOH (50 ml) in dropwise and stirred for 12 h at 70° C. The resulting mixture was concentrated under vacuum. The residue was diluted with 200 ml of water and extracted with ethyl acetate (2×200 ml). The organic layer was washed with water and brine, dried over Na2SO4 and concentrated under vacuum to give 30 g (71%) I-2 as brown oil.
Synthesis of I-3




A solution of 2-bromo-1-(2-chloro-5-nitrophenyl)ethan-1-one (I-2) (30 g, 108 mmol, 1.00 equiv) and 5-bromopyrimidin-2-amine (15 g, 88 mmol, 0.81 equiv) in ethanol (300 ml) was stirred for 12 h at 75° C. and then concentrated under vacuum. The residue was diluted with 200 ml of water and extracted with 3×100 ml of ethyl acetate. The combined organic layers was washed with brine, dried over Na2SO4 and concentrated under vacuum to give 15 g (39%) of 6-bromo-2-(2-chloro-5-nitrophenyl)imidazo[1,2-a]pyrimidine (I-3) as a brown solid.
Synthesis of I-4




To a suspension of 6-bromo-2-(2-chloro-5-nitrophenyl)imidazo[1,2-a]pyrimidine (1-3) (10 g, 28.28 mmol, 1.00 equiv) in ethanol (100 ml) was added SnCl2.2H2O (12.7 g) and stirred for 12 h at 75° C. The solvent was removed under vacuum and the residue was diluted with water. The pH value of the mixture was adjusted to 8-9 with sodium bicarbonate (sat.). The solids were collected by filtration and applied onto a silica gel column with ethyl acetate/petroleum ether (2/1) to give 2.6 g (28%) of 3-[6-bromoimidazo[1,2-a]pyrimidin-2-yl]-4-chloroaniline (1-4) as a light yellow solid. 1H-NMR: (d6-DMSO, 400 MHz): 9.37 (d, J=2.4 Hz, 1H), 8.63 (d, J=2.4 Hz, 1H), 8.47 (s, 1H), 7.56 (d, J=2.8 Hz, 1H), 7.18 (d, J=8.4 Hz, 1H), 6.59 (dd, J=8.4, 2.8 Hz, 1H), 5.44 (s, 2H). EI, m/z): MS (M+H)+=325
Example 2
Synthesis of isopropyl (2-(3-aminophenyl)imidazo[1,2-a]pyrimidin-6-y)carbamate (I-8)




Synthesis of I-5




Into a 1-L round-bottom flask, was placed 5-nitropyrimidin-2-amine (30 g, 214.13 mmol, 1.00 equiv), methanol (400 mL), Palladium carbon (12 g). The resulting solution was stirred overnight at room temperature in a hydrogen bath. The solids were filtered out. The resulting mixture was concentrated under vacuum. This resulted in 20 g (85%) of pyrimidine-2,5-diamine as a light brown solid.
Synthesis of I-6




Into a 1-L round-bottom flask, was placed pyrimidine-2,5-diamine I-5) (20 g, 181.62 mmol, 1.00 equiv), water (500 mL), chloro(propan-2-yloxy)methanone (33.3 g, 271.73 mmol, 1.50 equiv). This was followed by the addition of pyridine (71.8 g, 907.71 mmol, 5.00 equiv) dropwise with stirring. The resulting solution was stirred for 5 h at room temperature. The resulting solution was extracted with 5×500 mL of ethyl acetate and the organic layers combined and concentrated under vacuum. The residue was applied onto a silica gel column with ethyl acetate/petroleum ether (2:1). This resulted in 26 g (73%) of propan-2-yl N-(2-aminopyrimidin-5-yl)carbamate (1-6) as a yellow solid.
Synthesis of 1-7




Into a 500-mL round-bottom flask, was placed propan-2-yl N-(2-aminopyrimidin-5-yl)carbamate (I-6) (6 g, 30.58 mmol, 1.00 equiv), Acetone (300 mL), 2-bromo-1-(3-nitrophenyl)ethan-1-one (8.2 g, 33.60 mmol, 1.10 equiv). The resulting solution was stirred overnight at 70° C. The reaction mixture was cooled. The solids were collected by filtration. This resulted in 8 g (77%) of propan-2-yl N-[2-(3-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate (I-7) as a yellow solid.
Synthesis of 1-8




Into a 1-L round-bottom flask, was placed tetrahydrofuran (300 mL), Raney Ni (10 g), propan-2-yl N-[2-(3-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate (1-7) (7.5 g, 21.97 mmol, 1.00 equiv). The resulting solution was stirred for 5 h at room temperature in a hydrogen bath. The solids were filtered out, and washed with 5×150 mL MeOH. The resulting mixture was concentrated under vacuum. This resulted in 6.0 g (88%) of propan-2-yl N-[2-(3-aminophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate (1-8) as a yellow solid. 1H-NMR: (d6-DMSO, 300 MHz): 10.10(s, 1H), 9.30(s, 1H), 8.54(s, 1H), 8.41(s, 1H), 7.23-7.37(m, 3H), 6.79-6.85(m, 1H), 4.92-4.98(m, 1H), 3.17(s, 2H), 1.13-1.31(m, 6H). M/Z=312 (M+1).
The reduction can be also carried out using tin chloride using a protocol described in the synthesis of I-4.
Example 3
Synthesis of isopropyl (2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-9)




Isopropyl (2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-9) was synthesized using the synthetic protocol similar to one described for I-8 2-bromo-1-(2-chloro-5-nitrophenyl)ethan-1-one was used in lieu of 2-bromo-1-(3-nitrophenyl)ethan-1-one for cycization step as described in the synthesis of I-7. 1H-NMR: (CD3OD, 300 MHz): 9.30(s, 1H), 8.51(d, J=2.1 Hz, 1H), 8.37(s, 1H), 7.37(d, J=1.8 Hz, 1H), 7.23(d, J=6.6 Hz, 1H), 6.72-6.74(m, 1H), 5.01-5.07(m, 1H), 1.24-1.36(m, 6H). LC-MS-: (EI, m/z): MS [M+H]+=346.
Example 4
Synthesis of isopropyl (2-(5-amino-2-fluorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-10)




Isopropyl (2-(5-amino-2-fluorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-10) was synthesized using the synthetic protocol similar to one described for I-8 2-bromo-1-(2-fluoro-5-nitrophenyl)ethan-1-one was used in lieu of 2-bromo-1-(3-nitrophenyl)ethan-1-one for cycization step as described in the synthesis of I-7. 1H-NMR-: (d6-DMSO, 400 MHz): 9.94(s, 1H), 9.24(s, 1H), 8.46-8.47(m, 1H), 8.26-8.28(m, 1H), 7.51-7.53(m, 1H), 6.96-7.02(m, 1H), 6.55-6.59(m, 1H), 4.89-4.98(m, 1H), 3.17(s, 2H), 1.07-1.30(m, 6H). LC-MS− (EI, m/z): MS [M+H]+=330.
Example 5
Synthesis of tert-butyl (4-(2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)(methyl)carbamate (I-11)




In a 10 ml microwave via I-4 (140 mg, 0.48 mmol, 1.0 eq.), boronic ester (216 mg, 0.65 mmol, 1.5 eq.), Tetrakis(triphenylphosphine)palladium(0(30 mg, 0.02 mmol, 0.05 eq.) and 1 M sodium carbonate solution (0.87 ml, 0.87 mM, 2.0 eq.) were added. The vial was sealed and purged with nitrogen. 1,4-dioxane was added into the vial via a syringe and the solution was microwaved for 30 minutes at 120° C. The reaction mixture was added ethyl acetate and filtered. Silica gel was added and evaporated dry. Purification was done by ISCO, 25% ethyl acetate in hexane isocratically, then via a slow gradient through to 80% ethyl acetate. The system was held at 80% to separate the target compound I-11. m/z (ESI): 451 (M+H+), 1H NMR (600 MHz, DMSO-D6) δ 9.35 (d, J=2.6, 1H), 8.94 (d, J=2.6, 1H), 8.50 (s, 1H), 7.75 (d, J=8.7, 2H), 7.58 (d, J=2.9, 1H), 7.46 (d, J=8.7, 2H), 7.17 (d, J=8.5, 1H), 6.58 (m, 1H), 5.41 (s, 2H), 3.24 (s, 3H), 1.43 (s, 9H).
Example 6
Synthesis 2-methoxyethyl (3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)carbamate (I-12)




2-methoxyethyl (3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)carbamate (I-12) was synthesized using I-4 and 2-methoxyethyl carbonochloridate using the synthetic protocol similar to one described for I-16. The residue was redissolved in methanol and precipitation yielded the compound. m/z (ESI): 426 (M+H).
Example 7
Synthesis of methyl (4-(2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)carbamate (I-13) (HO)2B




To a solution of bromide (1 eq.) in THF:H2O (4:1) solvent (0.3 mM) was added boronic acid (1.5 eq.), K3PO4(s) (4 eq.) and DPP-Pd (0.26 mmol/g loading) (0.1 eq.). The vial was sealed and evacuated of air with vacuum and purged with nitrogen gas. The reaction vial was heated for 1 hour at 120° C. in the microwave. The vial was left to cool, and filtered. The filter was washed twice with THF:H2O (4:1) solvent. The filtrate was collected, concentrated in vacuo, and remaining residue was further purified using column chromatography. E/Z (ESI): 395 (M+H+). 1H NMR (600 MHz, DMSO-D6) δ 9.85 (s, 1H), 9.28 (d, J=2.6, 1H), 8.91 (d, J=2.6, 1H), 8.48 (s, 1H), 7.71 (d, J=8.8, 2H), 7.62 (d, J=8.6, 2H), 7.58 (d, J=2.9, 1H), 7.16 (d, J=8.5, 1H), 6.57 (dd, J=2.9, 8.5, 1H), 5.40 (s, 2H), 3.70 (s, 3H).
Example 8
Synthesis of N-(3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)-5-methylfuran-2-carboxamide (I-14)




To the acid chloride (1.2 eq.) was added a solution of amine (1 eq.) in anhydrous pyridine (0.3 mM). The resultant solution was stirred and DMAP (0.02 eq.) was added. The reaction was stirred at room temperature for overnight. The residue was redissolved in methanol and precipitation yielded the compound. m/z (ESI): 431 (M+H, 1H NMR (600 MHz, DMSO-D6) δ 10.30 (s, 1H), 9.38 (d, J=2.5, 1H), 8.67 (t, J=2.5, 2H), 8.56 (s, 1H), 7.94 (dd, J=2.7, 8.8, 1H), 7.54 (d, J=8.7, 1H), 7.32 (d, J=3.4, 1H), 6.34 (dd, J=0.9, 3.3, 1H), 2.39 (s, 3H).
Example 9
Synthesis of N-(3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)cyclopentanecarboxamide (I-15)




I-15 was synthesized using N-(3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)pyrrolidine-1-carboxamide (I-4) and pyrrolidine-1-carbonyl chloride using a protocol used in the synthesis of I-14. Purification of the compound was done via normal phase column chromatography (30% to 100% ethyl acetate/hexane). m/z (ESI): 422 (M+H). 1H NMR (400 MHz, DMSO-D6) δ 9.37 (s, 1H), 8.65 (s, 1H), 8.53 (s, 1H), 8.46 (d, J=17.4, 2H), 7.73 (d, J=8.8, 1H), 7.41 (d, J=8.8, 1H), 3.39 (s, 4H), 1.86 (s, 4H).
Synthesis of Final Compounds
Example 10
Synthesis of isopropyl (2-(2-chloro-5-(5-fluorofuran-2-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (1)




In a 40 mL vial isopropyl (2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-9) (30 mg, 0.09 mmol) was dissolved in DMF (Volume: 0.3 mL). 5-fluorofuran-2-carboxylic acid (11 mg, 0.09 mmol) was then added to the reaction mixture followed by HATU (65.98 mg, 0.17 mmol) and (iPr)2NEt (0.043 mL, 0.26 mmol). The reaction was stirred at rt for 8 hrs. The reaction was monitored was LCMS which indicated the reaction was complete with a new peak of desired mass was observed (M+H=468.1). The reaction mixture was quenched with water and extracted with ethyl acetate (3×5 mL). Combined all organics, dried over sodium sulfate and concentrated under reduce pressure. The crude reaction purified by reverse phase HPLC yeild 2-(2-chloro-5-(5-fluorofuran-2-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (1). The TFA salt was neutralized to a free base by a HCO3 column. 1H NMR (400 MHz, DMSO) δ 10.41 (s, 1H), 10.01 (s, 1H), 9.31 (s, 1H), 8.69 (s, 1H), 8.61 (d, J=2.7, 1H), 8.51 (d, J=2.7, 1H), 7.87 (dd, J=2.7, 8.8, 1H), 7.53 (d, J=8.7, 1H), 7.47 (t, J=3.6, 1H), 6.11 (dd, J=3.7, 7.1, 1H), 5.03-4.85 (m, 1H), 1.29 (d, J=6.2, 6H). M/Z=(458.1M+1). RT=1.64 min.
Syntheses of Compounds 3, 7, 11, 18, 22, and 41
Compounds 3, 7, 11, 18, 22, 38, and 41 were synthesized by following the amide coupling reaction described above and using the appropriate carboxylic acid.
Example 11
Synthesis of isopropyl (2-(2-chloro-5-(pyrrolidine-1-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (2)




In a 40 mL vial isopropyl (2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (I-9) (100 mg, 0.29 mmol) was dissolved in pyridine (Volume: 1.0 mL). DMAP (0.71 mg, 0.02 mmol) was then added to the reaction mixture followed by pyrrolidine chloride (58 mg, 0.43 mmol). The reaction was stirred at rt for 3 days. The reaction was quenched with methanol and evaporated dry. ISCO was used for purification -60% ethyl acetate in hexane isocratically, then a gradient to 100% ethyl acetate, and kept isocratically to elute target product. (2). 1H NMR (400 MHz, DMSO) δ 9.99 (s, 1H), 9.29 (s, 1H), 8.63 (s, 1H), 8.50 (d, J=2.7, 1H), 8.44 (s, 1H), 8.39 (d, J=2.7, 1H), 7.70 (dd, J=2.7, 8.8, 1H), 7.38 (d, J=8.8, 1H), 4.99-4.88 (m, 1H), 3.39 (t, J=6.6, 4H), 1.85 (t, J=6.5, 4H), 1.29 (d, J=6.2, 6H). M/Z=443.1 (M+1). RT=1.51.
Syntheses of Compounds 5, 6, 9, 10, 14, 16, 17, 20, 23 and 40
Compounds 5, 6, 9, 10, 14, 16, 17, 20, 23 and 40 were synthesized following the urea coupling reaction described above using the appropriate intermediates and carbonyl chloride.
Example 12
Synthesis of isopropyl (2-(2-chloro-5-(3,3-difluoropyrrolidine-1-carboxamido)phenyl) imidazo[1,2-a]pyrimidin-6-yl)carbamate (4)




To a solution of difluoropyrrolidine.HCl (1 eq.) in anhydrous pyridine (0.3 mM) was added triphosgene (1.2 eq.) at 0° C. and the mixture was stirred for 30 minutes. The bright orange reaction mixture with yellow precipitate was then added directly to a solution of isopropyl (2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate, I-9 in anhydrous pyridine (0.3 mM). DMAP (0.02 eq.) was added and the reaction was stirred overnight. Purification of the compound was done via mass-triggered reverse phase column chromatography preparative system (15% to 65% (B)), m/z (ESI) for 4: 479 (M+H+), 1H NMR (400 MHz, DMSO-D6) δ 10.00 (s, 1H), 9.29 (s, 1H), 8.67 (d, J=19.1, 2H), 8.50 (d, J=2.3, 1H), 8.39 (d, J=2.1, 1H), 7.69 (d, J=8.8, 1H), 7.41 (d, J=8.8, 1H), 4.94 (dt, J=5.9, 11.8, 1H), 3.85 (t, J=13.2, 2H), 3.65 (t, J=7.2, 4H), 1.29 (d, J=6.2, 6H); 19F-NMR: 100.44.
Example 13
Synthesis of isopropyl (2-(2-fluoro-5-(furan-2-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (12)




In a 40 mL vial 1-10 (0.5 g, 1.518 mmol) in Pyridine (Volume: 10 mL) to give a yellow solution. To this was added Furan-2-carbonyl Chloride (0.198 g, 1.518 mmol) at 0° C. and the reaction mixture was stirred for 1 hr. Checked via LC/MS and found the desired peak at 424 (M+H). The reaction mixture was quenched with 60 mL water and extracted with ethyl acetate. The same step was repeated once again to get rid off any extra pyridine. Combined all organics, dried over sodium sulfate and purified via ISCO (Ethyl acetate/MeOH=0-10%). 1H NMR (400 MHz, DMSO) δ 10.43 (s, 1H), 10.06 (s, 1H), 9.36 (s, 1H), 8.69 (dd, J=2.8, 6.9, 1H), 8.56 (d, J=2.7, 1H), 8.45 (d, J=4.2, 1H), 8.02 (d, J=1.0, 1H), 7.95-7.85 (m, 1H), 7.46 (d, J=3.4, 1H), 7.37 (dd, J=9.0, 10.9, 1H), 6.78 (dd, J=1.7, 3.5, 1H), 5.00 (dt, J=6.3, 12.5, 1H), 1.35 (d, J=6.2, 6H).
Synthesis of Compounds 8, 13, 38, and 42
Compounds 8, 13, 38, and 42 were synthesized by following the amide coupling reaction described above and using the appropriate intermediate and carbonyl chloride.
Example 14
Synthesis of N-(4-chloro-3-(3-fluoro-6-phenylimidazo[1,2-a]pyrimidin-2-yl)phenyl)pyrrolidine-1-carboxamide (15)




To a solution of 2 (1 eq.) in chloroform (0.3 mM) was added SelectFluor (1.5 eq) and the reaction was allowed to stir in a sealed tube at 90° C. An addition of SelectFluor (1.5 eq) was added each day for two days, and the reaction was stirred and monitored over 1 week. At completion, the reaction mixture was concentrated in vacuo and the residue was redissolved in methanol. Purification of the compound was done via mass-triggered reverse phase column chromatography preparative system (15% to 75% (B)). Percentage yield: 25%. m/z (ESI) for 15: 461.1 (M+H+) 1H NMR (600 MHz, DMSO-D6) δ 9.14 (d, J=2.2, 1H), 8.98 (d, J=2.5, 1H), 8.45 (s, 1H), 8.00 (d, J=2.7, 1H), 7.87 (m, 2H), 7.74 (dd, J=2.7, 8.8, 1H), 7.55 (m, 2H), 7.47 (m, 2H), 3.38 (t, J=6.7, 4H), 1.85 (d, J=6.6, 4H). 19F-NMR: δ+−146.18
Synthesis of Compound 39
Compound 39 was synthesized in a similar fashion using fluorination of Compound 29 using selectfluor.
Example 14
Synthesis of isopropyl (2-(2-fluoro-5-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl)carbamate (19)




Compound 19 was obtained as a intermediate in the synthesizes of I-10.
Example 15
Synthesis of methyl (4-(2-(2-chloro-5-(5-methylfuran-2-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)carbamate (27)




To the acid chloride (1.2 eq.) was added a solution of amine (1 eq.) in anhydrous pyridine (0.3 mM). The resultant solution was stirred and DMAP (0.02 eq.) was added. The reaction was stirred at room temperature for at least 1 hour to overnight. At completion, the mixture was quenched with methanol, concentrated in vacuo, and a residue obtained for purification 1H NMR (600 MHz, DMSO-D6) δ 10.31 (s, 1H), 9.86 (s, 1H), 9.32 (d, J=2.5, 1H), 8.97 (d, J=2.5, 1H), 8.69 (d, J=2.6, 1H), 8.60 (s, 1H), 7.93 (dd, J=2.7, 8.7, 1H), 7.73 (d, J=8.6, 2H), 7.63 (d, J=8.5, 2H), 7.55 (d, J=8.7, 1H), 7.33 (d, J=3.3, 1H), 6.35 (d, J=2.5, 1H), 3.70 (s, 3H), 2.40 (s, 3H). M/Z=502.1 (M+1).
Example 16
Synthesis of methyl (4-(2-(2-chloro-5-(pyrrolidine-1-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)carbamate (24)




Compound 24 was synthesized using N-(3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)pyrrolidine-1-carboxamide (I-15) as the bromide and (4-((methoxycarbonyl)amino)phenyl)boronic acid using a suzuki coupling protocol as described in the synthesis of I-11. The residue was redissolved in methanol and precipitation yielded the compound. m/z (ESI) of 24: 491.2 (M+H+), 1H NMR (600 MHz, DMSO-D6) δ 9.86 (s, 1H), 9.30 (d, J=2.6, 1H), 8.94 (d, J=2.6, 1H), 8.55 (s, 1H), 8.47 (d, J=2.8, 2H), 7.73 (m, 3H), 7.62 (d, J=8.5, 2H), 7.41 (d, J=8.8, 1H), 3.70 (s, 3H), 3.40 (t, J=6.5, 4H), 1.86 (t, J=6.4, 4H).
Syntheses of Compound 25, 28 and 29
Compound 25, 28 and 29 was synthesized according to the protocol described above using 4F-phenyl boronic acid, thiophene3-borinic acid and phenyl boronic acid respectively.
Example 17
Synthesis of N-(4-chloro-3-(6-(4-(methylamino)phenyl)imidazo[1,2-a]pyrimidin-2-yl)phenyl)pyrrolidine-1-carboxamide (26)




tert-Butyl-(4-(2-(5-amino-2-chlorophenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)(methyl)carbamate (I-11) was coupled with pyrrolidine-1-carbonyl chloride in a a protocol as described in the synthesis of 2. Purification of the compound was carried out using mass-triggered reverse phase column chromatography preparative system (20 to 75% (B)). m/z (ESI): 548 (M+H.
tert-butyl(4-(2-(2-chloro-5-(pyrrolidine-1-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)(methyl)carbamate was treated with 5% TFA in DCM and was stirred overnight at room temperature. At completion, the reaction mixture was concentrated in vacuo and the residue was redissolved in methanol. Purification of the compound was done via mass-triggered reverse phase column chromatography preparative system (15% to 65% (B)). m/z (ESI) for 26: 447.2 (M+H+), 1H NMR (600 MHz, DMSO-D6) δ 9.17 (d, J=2.6, 1H), 8.88 (d, J=2.6, 1H), 8.5, 362 (s, 1H), 8.46 (m, 2H), 7.73 (m, 1H), 7.52 (d, J=8.6, 2H), 7.40 (d, J=8.8, 1H), 6.68 (d, J=8.7, 2H), 5.97 (s, 1H), 3.40 (s, 4H), 2.73 (d, J=5.0, 3H), 1.86 (s, 4H).
Syntheses of Compounds 21, 36 and 37
Compounds 21, 36 and 37 were synthesized according to the procedure described above in using I-11 and 2-methoxyethyl carbonochloridate and ethylchloroformate
Example 18
Synthesis of N-(4-chloro-3-(6-phenylimidazo[1,2-a]pyrimidin-2-yl)phenyl)-5-methylfuran-2-carboxamide (31)




Compound 31 was synthesized using N-(3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)-5-methylfuran-2-carboxamide (I-14) as the bromide and phenylboronic acid using a suzuki coupling protocol described in the synthesis of I-11. The residue was redissolved in methanol and precipitation yielded the compound 1H NMR (400 MHz, DMSO-D6) δ 10.33 (s, 1H), 9.38 (d, J=2.1, 1H), 8.99 (d, J=2.0, 1H), 8.71 (d, J=2.5, 1H), 8.62 (s, 1H), 7.95 (dd, J=2.4, 8.7, 1H), 7.80 (d, J=7.8, 2H), 7.52 (dt, J=7.8, 14.7, 5H), 7.34 (d, J=3.3, 1H), 6.35 (d, J=3.3, 1H), 2.40 (s, 3H).
Synthesis of Compound 30
Compound 30 was synthesized according to the protocol described above using thiophene-3-boronic acid.
Example 19
Synthesis 2-methoxyethyl N-[4-chloro-3-(6-{4-[(methoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-2-yl)phenyl]carbamate (32)




Compound 32 was synthesized using 2-methoxyethyl (3-(6-bromoimidazo[1,2-a]pyrimidin-2-yl)-4-chlorophenyl)carbamate (I-12) as the bromide and (4-((methoxycarbonyl)amino)phenyl)boronic acid using a suzuki coupling procedure described in I-13. Purification of the compound was done via mass-triggered reverse phase column chromatography preparative system (15% to 65% (B)). m/z (ESI) for 32: 496 (M+H+), 1H NMR (600 MHz, DMSO-D6) δ 10.01 (s, 1H), 9.86 (s, 1H), 9.30 (s, 1H), 8.95 (s, 1H), 8.55 (s, 1H), 8.47 (s, 1H), 7.72 (d, J=6.0, 2H), 7.62 (d, J=6.6, 2H), 7.50 (dt, J=5.7, 8.5, 2H), 4.24 (s, 2H), 3.70 (s, 3H), 3.59 (s, 2H), 3.30 (s, 3H).
Syntheses of Compounds 34 and 35
Compound 34 and 35 were synthesized according to the protocol described above using thiophene-3-boronic acid and phenyl boronic acid, respectively.
Example 20
Synthesis of N-(4-chloro-3-(6-(4-(methylamino)phenyl)imidazo[1,2-a]pyrimidin-2-yl)phenyl)-5-methylfuran-2-carboxamide (33)




The amide coupling was carried out using a procedure similar to one described in the synthesis of 27. The residue was used immediately without further purification. m/z (ESI): 559 (M+H+).
tert-butyl (4-(2-(2-chloro-5-(5-methylfuran-2-carboxamido)phenyl)imidazo[1,2-a]pyrimidin-6-yl)phenyl)(methyl)carbamate was treated with 4.0M HCl in dioxane (2 eq.) and was stirred overnight at 50° C. At completion, the reaction mixture was concentrated in vacuo and the residue was redissolved in methanol. Purification of the compound was done via mass-triggered reverse phase column chromatography preparative system (15% to 65% (B)), m/z (ESI) for 33: 460 (M+H+), 1H NMR (400 MHz, DMSO-D6) δ 10.32 (s, 1H), 9.19 (d, J=2.5, 1H), 8.90 (d, J=2.5, 1H), 8.69 (d, J=2.6, 1H), 8.56 (s, 1H), 7.93 (dd, J=2.7, 8.8, 1H), 7.53 (dd, J=1.7, 8.7, 3H), 7.34 (d, J=3.3, 1H), 6.68 (d, J=8.7, 2H), 6.35 (d, J=3.3, 1H), 6.00 (q, J=4.9, 1H), 2.73 (d, J=5.0, 3H), 2.40 (s, 3H).







TABLE II







Listing of the Exemplified Compounds of the Invention











1HNMR and/or mass and/or 


No
Structure
retention time (mins)





 1




1H NMR (400 MHz, DMSO) δ 10.41 (s,  1H), 10.01 (s, 1H), 9.31 (s, 1H), 8.69 (s,  1H), 8.61 (d, J = 2.7, 1H), 8.51 (d, J = 2.7,  1H), 7.87 (dd, J = 2.7, 8.8, 1H), 7.53 (d,  J = 8.7, 1H), 7.47 (t, J = 3.6, 1H), 6.11 (dd,  J = 3.7, 7.1, 1H), 5.03-4.85 (m, 1H), 1.29  (d, J = 6.2, 6H). M/Z = (458.1 M + 1).  RT = 1.64 min


 


 2




1H NMR (400 MHz, DMSO) δ 9.99 (s,  1H), 9.29 (s, 1H), 8.63 (s, 1H), 8.50 (d,  J = 2.7, 1H), 8.44 (s, 1H), 8.39 (d, J = 2.7,  1H), 7.70 (dd, J = 2.7, 8.8, 1H), 7.38 (d,  J = 8.8, 1H), 4.99-4.88 (m, 1H), 3.39 (t,  J = 6.6, 4H), 1.85 (t, J = 6.5, 4H), 1.29 (d,  J = 6.2, 6H). M/Z = 443.1 (M + 1).  RT = 1.51


 


 3




1H NMR (400 MHz, DMSO) δ 10.28 (s,  1H), 9.99 (s, 1H), 9.23 (s, 1H), 8.45 (s,  1H), 8.38 (s, 1H), 8.34 (s, 1H), 7.75 (d,  J = 7.9, 1H), 7.66 (d, J = 7.6, 1H), 7.43 (dd,  J = 5.8, 14.9, 2H), 6.11 (dd, J = 3.4, 6.7,  1H), 4.94 (dt, J = 6.2, 12.1, 1H), 1.29 (d,  J = 6.2, 6H). M/Z = 424.1 (M + 1).  RT = 1.49


 


 4




1H NMR (400 MHz, DMSO) δ 10.00 (s,  1H), 9.29 (s, 1H), 8.67 (d, J = 19.1, 2H),  8.50 (d, J = 2.3, 1H), 8.39 (d, J = 2.1, 1H),  7.69 (d, J = 8.8, 1H), 7.41 (d, J = 8.8, 1H),  4.94 (dt, J = 5.9, 11.8, 1H), 3.85 (t,  J = 13.2, 3H), 3.65 (t, J = 7.2, 3H), 1.29 (d,  J = 6.2, 6H). M/Z = 479.1 (M + 1).  RT = 1.59


 


 5




1H NMR (400 MHz, DMSO) δ 9.97 (s,  1H), 9.21 (s, 1H), 8.43 (d, J = 2.6, 1H),  8.32 (s, 1H), 8.25 (s, 1H), 8.13 (s, 1H),  7.55 (d, J = 8.1, 1H), 7.48 (d, J = 7.8, 1H),  7.29 (t, J = 7.9, 1H), 5.03-4.79 (m, 1H),  3.39 (t, J = 6.6, 4H), 1.86 (t, J = 6.6, 4H),  1.29 (d, J = 6.2, 6H). M/Z = 409.2 (M + 1).  RT = 1.38


 


 6




M/Z = 397.2 (M + 1). RT = 0.76


 


 7




M/Z = 418.1 (M + 1). RT = 0.79


 


 8




M/Z = 406.1 (M + 1). RT = 1.44


 


 9




M/Z = 415.2 (M + 1). RT = 0.85


 


10




M/Z = 384.2 (M + 1). RT = 0.84


 


11




M/Z = 423.1 (M + 1). RT = 0.85


 


12




1H NMR (400 MHz, DMSO) δ 10.43 (s,  1H), 10.06 (s, 1H), 9.36 (s, 1H), 8.69 (dd,  J = 2.8, 6.9, 1H), 8.56 (d, J = 2.7, 1H), 8.45  (d, J = 4.2, 1H), 8.02 (d, J = 1.0, 1H),  7.95-7.85 (m, 1H), 7.46 (d, J = 3.4, 1H),  7.37 (dd, J = 9.0, 10.9, 1H), 6.78 (dd,  J = 1.7, 3.5, 1H), 5.00 (dt, J = 6.3, 12.5,  1H), 1.35 (d, J = 6.2, 6H) M/Z = 424.2  (M + 1). RT = 3.06


 


13




M/Z = 420.2 (M + 1). RT = 0.86


 


14




M/Z = 399.2 (M + 1). RT = 0.77


 


15




M/Z = 461.1 (M + 1). RT = 1.7 


 


16




M/Z = 411.2 (M + 1). RT = 0.82


 


17




M/Z = 427.2 (M + 1). RT = 0.86


 


18




M/Z = 440.1 (M + 1). RT = 0.91


 


19




M/Z = 360.1 (M + 1). RT = 1.67


 


20




M/Z = 383.2 (M + 1). RT = 0.71


 


21




M/Z = 398.2 (M + 1). RT = 0.9 


 


22




M/Z = 435.2 (M + 1). RT = 0.8 


 


23




M/Z = 414.2 (M + 1). RT = 1.40


 


24




1H NMR (600 MHz, DMSO-D6) δ 9.86 (s,  1H), 9.30 (d, J = 2.6, 1H), 8.94 (d, J = 2.6,  1H), 8.55 (s, 1H), 8.47 (d, J = 2.8, 2H),  7.73 (m, 3H), 7.62 (d, J = 8.5, 2H), 7.41 (d,  J = 8.8, 1H), 3.70 (s, 3H), 3.40 (t, J = 6.5,  4H), 1.86 (t, J = 6.4, 4H). M/Z = 491.2  (M + 1). RT = 1.58


 


25




H NMR (400 MHz, DMSO) δ 9.35 (s, 1H),  8.95 (s, 1H), 8.57 (s, 1H), 8.48 (s, 2H),  7.90-7.78 (m, 2H), 7.74 (d, J = 8.8, 1H),  7.41 (t, J = 8.6, 3H), 3.40 (m, 4H), 1.86 (m,  4H) M/Z = 436.1 (M + 1). RT = 1.66


 


26




+), H NMR (600 MHz, DMSO-D6) δ 9.17  (d, J = 2.6, 1H), 8.88 (d, J = 2.6, 1H), 8.52  (s, 1H), 8.46 (m, 2H), 7.73 (m, 1H), 7.52  (d, J = 8.6, 2H), 7.40 (d, J = 8.8, 1H), 6.68  (d, J = 8.7, 2H), 5.97 (s, 1H), 3.40 (s, 4H),  2.73 (d, J = 5.0, 3H), 1.86 (s, 4H).  M/Z = 447.2 (M + 1). RT = 1.49


 


27




1H NMR (600 MHz, DMSO-D6) δ 10.31  (s, 1H), 9.86 (s, 1H), 9.32 (d, J = 2.5, 1H),  8.97 (d, J = 2.5, 1H), 8.69 (d, J = 2.6, 1H),  8.60 (s, 1H), 7.93 (dd, J = 2.7, 8.7, 1H),  7.73 (d, J = 8.6, 2H), 7.63 (d, J = 8.5, 2H),  7.55 (d, J = 8.7, 1H), 7.33 (d, J = 3.3, 1H),  6.35 (d, J = 2.5, 1H), 3.70 (s, 3H), 2.40 (s,  3H). M/Z = 502.1 (M + 1). RT = 1.70


 


28




1H NMR (400 MHz, DMSO-D6) δ 9.41 (d,  J = 2.5, 1H), 9.05 (d, J = 2.5, 1H), 8.52 (s,  1H), 8.47 (d, J = 2.6, 2H), 8.08 (dd, J = 1.3,  2.9, 1H), 7.78 (dd, J = 2.9, 5.0, 1H), 7.73  (dd, J = 2.7, 8.8, 1H), 7.63 (dd, J = 1.3, 5.0,  1H), 7.41 (d, J = 8.8, 1H), 3.40 (t, J = 6.6,  4H), 1.86 (t, J = 6.5, 4H). M/Z = 424.1  (M + 1). RT = 1.62


 


29




1H NMR (400 MHz, DMSO) δ 9.37 (s,  1H), 8.97 (s, 1H), 8.58 (s, 1H), 8.48 (d,  J = 4.4, 2H), 7.77 (dd, J = 7.8, 20.3, 3H),  7.55 (d, J = 5.0, 2H), 7.44 (dd, J = 8.2,  25.3, 2H), 3.40 (m, 4H), 1.86 (m, 4H).  M/Z = 418.1 (M + 1). RT = 01.65


 


30




1H NMR (400 MHz, DMSO-D6) δ 10.31  (s, 1H), 9.42 (d, J = 1.9, 1H), 9.08 (d,  J = 2.0, 1H), 8.70 (d, J = 2.4, 1H), 8.57 (s,  1H), 8.10 (s, 1H), 7.93 (m, 1H), 7.78 (m,  1H), 7.64 (d, J = 5.0, 1H), 7.55 (d, J = 8.7,  1H), 7.33 (d, J = 3.2, 1H), 6.35 (d, J = 3.2,  1H), 2.40 (s, 3H). M/Z = 435.1 (M + 1).  RT = 1.78


 


31




1H NMR (400 MHz, DMSO) δ 10.33 (s,  1H), 9.38 (d, J = 2.1, 1H), 8.99 (d, J = 2.0,  1H), 8.71 (d, J = 2.5, 1H), 8.62 (s, 1H),  7.95 (dd, J = 2.4, 8.7, 1H), 7.80 (d, J = 7.8,  2H), 7.56 (t, J = 8.3, 3H), 7.47 (t, J = 7.3,  1H), 7.34 (d, J = 3.3, 1H), 6.35 (d, J = 3.3,  1H), 2.40 (s, 3H) M/Z = 429.1 (M + 1).  RT = 1.82


 


32




1H NMR (600 MHz, DMSO) δ 10.01 (s,  1H), 9.86 (s, 1H), 9.30 (s, 1H), 8.95 (s,  1H), 8.55 (s, 1H), 8.47 (s, 1H), 7.72 (d,  J = 6.0, 2H), 7.62 (d, J = 6.6, 2H), 7.50 (dt,  J = 5.7, 8.5, 2H), 4.24 (s, 2H), 3.70 (m,  3H), 3.59 (m, 3H), 3.30 (s, 3H).  M/Z = 496.1 (M + 1). RT = 1.6


 


33




M/Z = 458.1 (M + 1). RT = 3.18


 


34




1H NMR (400 MHz, DMSO-D6) δ 9.15 (d,  J = 2.4, 1H), 8.95 (d, J = 2.4, 1H), 8.41 (s,  1H), 7.99 (d, J = 2.7, 1H), 7.86 (d, J = 1.6,  1H), 7.61 (m, 2H), 7.54 (d, J = 4.0, 1H),  7.41 (d, J = 8.8, 1H), 4.27 (m, 2H), 3.64  (m, 2H), 3.38 (s, 3H). M/Z = 429.1  (M + 1). RT = 1.7


 


35




1H NMR (400 MHz, DMSO-D6) δ 10.03  (s, 1H), 9.37 (d, J = 2.5, 1H), 8.98 (d,  J = 2.5, 1H), 8.58 (s, 1H), 8.48 (s, 1H),  7.80 (d, J = 7.9, 2H), 7.52 (m, 5H), 4.24  (m, 2H), 3.59 (m, 2H), 3.30 (s, 3H).  M/Z = 423.1 (M + 1). RT = 1.73


 


36




1H NMR (600 MHz, DMSO) δ 10.00 (s,  1H), 9.17 (d, J = 2.6, 1H), 8.89 (d, J = 2.6,  1H), 8.51 (s, 1H), 8.46 (d, J = 2.5, 1H),  7.52 (dd, J = 5.6, 11.8, 3H), 7.48 (d,  J = 8.7, 1H), 6.68 (d, J = 8.7, 2H), 5.97 (d,  J = 5.1, 1H), 4.24 (dd, J = 3.8, 5.4, 2H),  3.63-3.54 (m, 2H), 3.30 (s, 3H), 2.73 (d,  J = 5.0, 3H). M/Z = 452.1 (M + 1).  RT = 1.43


 


37




1H NMR (600 MHz, DMSO-D6) δ 9.87 (s,  1H), 9.17 (d, J = 2.6, 1H), 8.89 (d, J = 2.6,  1H), 8.51 (s, 1H), 8.44 (d, J = 2.5, 1H),  7.53 (d, J = 8.6, 3H), 7.47 (d, J = 8.7, 1H),  6.68 (d, J = 8.6, 2H), 5.97 (t, J = 5.0, 1H),  4.16 (q, J = 7.1, 2H), 2.73 (d, J = 5.0, 3H),  1.27 (t, J = 7.1, 3H) M/Z = 422.1 (M + 1).  RT = 1.49


 


38




M/Z = 372.9 (M + 1). RT = 1.59


 


39




1H NMR (600 MHz, DMSO) δ 9.14 (d,  J = 2.2, 1H), 8.98 (d, J = 2.5, 1H), 8.45 (s,  1H), 8.00 (d, J = 2.7, 1H), 7.89-7.84 (m,  2H), 7.74 (dd, J = 2.7, 8.8, 1H), 7.58-7.52  (m, 2H), 7.50-7.43 (m, 2H), 3.38 (t, J = 6.7,  4H), 1.85 (m, 4H) M/Z = 436.1 (M + 1).  RT = 1.82


 


40




M/Z = 416.2 (M + 1). RT = 3.33


 


41




M/Z = 437.2 (M + 1). RT = 3.07


 


42




M/Z = 380.0 (M + 1). RT = 0.83









It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the spirit and purview of this application and scope of the appended claims. All publications, patents, and patent applications cited herein are hereby incorporated by reference for all purposes.

## Claims

1. A compound of Formula I:




or a pharmaceutically acceptable salt, or stereoisomer thereof; wherein
L1 is —C(O)—or —S(O)2—;
R1 is selected from nitro, C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is optionally substituted by 1-2substituents independently selected from halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, and C1-4alkylcarbonyl;
R3 is selected from hydrogen, halo, cyano, C1-4alkyl and haloC1-4alkyl;
R4 is selected from hydrogen, C1-4alkyl, haloC1-4alkyl, and —C(O)R10, wherein R10 is hydroxy, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, C3-6cycloalkyl and C4-6heterocycloalkyl, each of which is optionally substituted by 1-2substituents independently selected from hydroxyl, halo and C1-4alkyl;
L3 is a bond, phenylene, or C5-6heteroarylene;
R0 is selected from hydroxyl, halo, nitro, —N═CHN(CH3)2, C1-4alkyl, C1-4alkoxy, —NR2aR2b, —NR5C(O) R6, —NR5S(O)2R8, C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein
the C1-4alkyl or C1-4alkoxy is optionally substituted by 1-2 substituents independently selected from C1-4alkoxy, amino, phenyl and C5-6heteroaryl;

wherein the phenyl or C5-6heteroaryl is optionally further substituted by halo or C1-4alkyl;
the C3-6cycloalkyl, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with halo, oxo, C1-4alkyl, hydroxyC1-4alkyl, haloC1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
R2a is hydrogen or C1-4alkyl;
R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxyl, halo or C1-4alkyl;
R5 is hydrogen or C1-4alkyl;
R6 is selected from hydrogen, Cl-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
the C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl and R9b is selected from hydrogen, C1-4alkyl, C1-4alkylcarbonyl and the C5-6heterocycloalkyl and C5-6heteroaryl substituents are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C1-4alkyl and C1-4alkoxycarbonyl,
the C5-6heteroaryl of R6 is optionally substituted with 1-2 substituents selected from hydroxy, C1-4alkyl, and C1-4alkoxycarbonyl,
the C3-6cycloalkyl or C5-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxylC1-4alkyl, aminocarbonyl, C1-4alkoxycarbonyl, and C1-4alkoxycarbonylaminoC1-4alkyl, and

R8 is C1-4alkyl or C1-4alkylamino.

2. The compound according to claim 1, wherein L1 is —C(O)—.

3. The compound according to claim 1, wherein R1 is selected from C1-4alkyl, C1-6alkoxy, amino, C5-9heteroaryl, C3-6cycloalkyl and C4-6heterocycloalkyl, each is optionally substituted by 1-2 substituents independently selected from halo, cyano, amino, C1-4alkyl, haloC1-4alkyl, C1-6alkoxy, C1-4alkylcarbonyl.

4. The compound according to claim 1, wherein R1 is selected from C5-9heteroaryl, C4-6heterocycloalkyl, and C3-6cycloalkyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl and C1-4alkoxy.

5. The compound according to claim 1, wherein R1 is selected from pyrrolyl, pyrazolyl, imidazolyl, oxazolyl, furanyl, thiophenyl, thiazolyl, pyrazinyl, cyclopropyl, cyclopentyl, pyrrolidinyl, and indolyl, each of which is independently optionally substituted by 1-2 substituents independently selected from halo, cyano, C1-4alkyl, haloC1-4alkyl and C1-4alkylcarbonyl.

6. The compound according to claim 1, wherein L1-R1 is selected from

7. The compound according to claim 1, wherein L1-R1 is selected from

8. The compound according to claim 1, wherein R3 is selected from hydrogen, halo, methyl, or trifluoromethyl.

9. The compound according to claim 1, wherein R3 is chloro or fluoro.

10. The compound according to claim 1, wherein R4 is hydrogen.

11. The compound according to claim 1, wherein R0 is selected from halo, nitro, C1-4alkyl, —N═CHN(CH3)2, —NHR2b, —NR5C(O)R6, —NR5S(O)2R8, C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl; wherein
the C4-6heterocycloalkyl, C4-6heterocycloalkenyl, phenyl and C5-6heteroaryl of R0 is optionally substituted with oxo, C1-4alkyl, —(CH2)1-4OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
R2b is selected from hydrogen, C1-4alkyl, wherein the alkyl is optionally substituted by amino, C4-6heterocycloalkyl, phenyl or C5-6heteroaryl, wherein the C4-6heterocycloalkyl, phenyl or C5-6heteroaryl is further optionally substituted by hydroxy or halo;
R5 is hydrogen or C1-4alkyl;
R6 is selected from hydrogen, C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, amino, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein
the C1-6alkyl, C1-4alkoxy, C3-6cycloalkoxy, and amino of R6 are each optionally substituted by 1-2 substituents independently selected from halo, hydroxy, C1-4alkyl, haloC1-4alkyl, C1-4alkoxy, —NR9aR9b, C5-6heterocycloalkyl, and C5-6heteroaryl, wherein R9a is hydrogen or C1-4alkyl, and R9b is selected from hydrogen, C1-4alkyl, and C1-4alkoxycarbonyl; and the C5-6heterocycloalkyl and C5-6heteroaryl are each further optionally substituted by 1-2 substituents independently selected from hydroxyl, C,1-4alkyl and C1-4alkoxycarbonyl;
the C5-6heteroaryl of R6 is optionally substituted with 1 to 2 C1-4alkyl;
the C3-6cycloalkyl or C5-6heterocycloalkyl of R6 are each independently optionally substituted by 1-2 substituents independently selected from halo, cyano, hydroxy, C1-4alkyl, haloC1-4alkyl, —CH2OCH3, —C(O)NH2, C1-4alkoxycarbonyl and C1-4alkoxycarbonylaminoC1-4alkyl; and
R8 is C1-4alkyl or C1-4alkylamino.

12. The compound according to claim 1, wherein R0 is selected from halo, nitro, hydroxyl, C1-4alkoxy, amino, C1-4alkylamino, —NH(CH2)1-2-phenyl, —NR5C(O)R6, —NR5S(O)2R8, oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl and C5-6heteroaryl; wherein
the oxazolidin-2-one, 1,2,4-triazol-5(4H)-one, pyrrolidin-2-one, phenyl or C5-6heteroaryl is optionally substituted with halo, C1-4alkyl, C1-4alkoxy, amino, C1-4alkylamino, —(CH2)1-4(OH, and —(CH2)1-4NRaRb, wherein Ra and Rb are each independently hydrogen, C1-4alkyl or C3-6cycloalkyl;
R5 is hydrogen or C1-4alkyl;
R6 is selected from C1-6alkyl, C1-4alkoxy, C3-6cycloalkyl, C5-6heterocycloalkyl, and C5-6heteroaryl, each of which is optionally substituted with 1 to 2 substituents independently selected from hydroxyl, C1-4alkoxy, amino, C1-4alkylamino; and
R8 is C1-4alkyl or C1-4alkylamino.

13. The compound according to claim 1, wherein -L3R0 is —NHC(O)(OCH(CH3)2, —NHC(O)OCH2CH3, —NHC(O)OCH3, nitro,

14. The compound according to claim 1 selected from:
propan-2-yl N-{2-[2-chloro-5-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-{2-[3-(5-fluorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin -6-yl}carbamate;
propan-2-yl N-(2-{2-chloro-5-[(3,3-difluoropyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-(2-{3-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-[2-(3-{[ethyl(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-{2-[3-(pyrazine-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-{2-[3-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-[2-(5-{[ethyl(methyl)carbamoyl]amino}-2-fluorophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-(2-{3-[(ethoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-{2-[3-(1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-{2-[2-fluoro-5-(furan-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-{2-[3-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-[2-(3-{[methoxy(methyl)carbamoyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-(2-{2-chloro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}-3-fluoroimidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-(2-{3-[(diethylcarbamoyl)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-(2-{2-fluoro-5-[(pyrrolidin-1-yl)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-{2[3-(5-chlorofuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-[2-(2-fluoro-5-nitrophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-(2-{3-[(dimethylcarbamoy)amino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)carbamate;
propan-2-yl N-[2-(3-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-{2[3-(2,4-dimethyl-1,3-oxazole-5-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate;
propan-2-yl N-[2-(3-{[(2-methoxyethoxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
methyl N-[4-(2-{2-chloro-5-[(pyrrolidin-1-yh)carbonylamino]phenyl}imidazo[1,2-a]pyrimidin-6-yl)phenyl]carbamate;
N-{4-chloro-3-[6-(4-fluorophenyl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide;
N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
methyl N-(4-{2-[2-chloro-5-(5-methylfuran-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}phenyl)carbamate;
N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}pyrrolidine-1-carboxamide;
N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
N-{4-chloro-3-[6-(thiophen-3-yh)imidazo[1,2-a]pyrimidin-2-yl]phenyl}-5-methylfuran-2-carboxamide;
N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran -2-carboxamide;
2-methoxyethyl N-[4-chloro-3-(6-{4-[(methoxycarbonyl)amino]phenyl}imidazo[1,2-a]pyrimidin-2-yhphenyl]carbamate;
N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)-5-methylfuran-2-carboxamide;
2-methoxyethyl N-{4-chloro-3-[6-(thiophen-3-yl)imidazo[1,2-a]pyrimidin-2-yl]phenyl}carbamate;
2-methoxyethyl N-(4-chloro-3-{6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
2-methoxyethyl N-(4-chloro-3-{6-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
ethyl N-(4-chloro-3-{6-[4-(methylamino)phenyl]imidazo[1,2-a]pyrimidin-2-yl}phenyl)carbamate;
N-(4-chloro-3-{6-chloroimidazo[1,2-a]pyrimidin-2-yl}phenyl)furan-2-carboxamide;
N-(4-chloro-3-{3-fluoro-6-phenylimidazo[1,2-a]pyrimidin-2-yl}phenyl)pyrrolidine-1-carboxamide;
propan-2-yl N-[2-(2-fluoro-5-{[(propan-2-yloxy)carbonyl]amino}phenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate;
propan-2-yl N-{2-[3-(5-methyl-1,3-thiazole-2-amido)phenyl]imidazo[1,2-a]pyrimidin-6-yl}carbamate; and
propan-2-yl N-[2-(3-cyclopropaneamidophenyl)imidazo[1,2-a]pyrimidin-6-yl]carbamate.

15. A pharmaceutical composition comprising a compound according to any claim 1, as an active ingredient and at least one excipient.

16. A method for treating the pathology and/or symptomology of a disease caused by a parasite, comprising administering to a subject a therapeutically effective amount of a compound according to claim 1, wherein the disease is selected from Leishmaniasis, Human African Trypanosomiasis and Chagas disease, and wherein the administering is optionally in combination with a second agent.

17. A method for treating the pathology and/or symptomology of a disease caused by a parasite, comprising administering to a subject a therapeutically effective amount of a composition according to claim 15, wherein the disease is selected from Leishmaniasis, Human African Trypanosomiasis and Chagas disease, and wherein the administering is optionally in combination with a second agent.