# Patent

## Title
Coryneform bacterium transformant and process for producing valine using the same

## Abstract

A transformant obtainable by introducing one or more of the following DNAs (a), (b), and (c) into a coryneform bacterium as a host.
(a) A DNA which encodes acetohydroxy acid synthase derived from Corynebacterium glutamicum and which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the DNA, or an analog thereof.
(b) A DNA which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum and which has mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the DNA, or an analog thereof.

(c) A DNA which encodes leucine dehydrogenase derived from Lysinibacillus sphaericus, or an analog thereof.

## Background
TECHNICAL FIELD
The present invention relates to a technique for producing valine. In more detail, the present invention relates to a coryneform bacterium transformant constructed by specific gene recombination and thereby provided with a valine-producing function, and relates to an efficient valine-producing process using the transformant.
BACKGROUND ART
Against the backdrop of global warming and exhaustion of fossil resources, production of chemical products using renewable resources, along with production of biofuels, is recognized as an emerging industry, biorefinery, which is an important means for realizing a low-carbon society, and has attracted keen attention.
Valine, which is one of the essential amino acids, is a useful substance as an ingredient of medicaments, foods, and cosmetics, or as an additive for animal feed, etc. Conventionally, valine is produced by a fermentation method or hydrolysis of proteins.
However, production of valine from renewable resources by a fermentation method is less productive as compared to production of lactic acid or ethanol for the reasons, for example, that the metabolic reaction from a raw material sugar consists of a great many steps and that produced valine causes feedback inhibition of metabolic enzymes, posing problems in industrial production.
Examples of known valine-producing technologies with the use of recombinant bacteria include the technologies described in Patent Literature 1 and 2.
Patent literature 1 discloses a technology for producing valine using a mutant strain of Corynebacterium glutamicum in which a gene encoding an enzyme involved in L-isoleucine biosynthesis, a gene encoding an enzyme involved in L-leucine biosynthesis, and a gene encoding an enzyme involved in D-pantothenic acid biosynthesis are weakened or deleted for an increased expression of a gene encoding an enzyme involved in L-valine biosynthesis.
Patent literature 2 discloses a technology for producing valine using a strain of Corynebacterium having an improved activity of transaminase C.
However, the processes of Non Patent Literature 1 and 2 do not have practically sufficient valine productivity.
CITATION LIST
Patent Literature
[PTL 1] JP 2009-521960 W
[PTL 2] JP 2008-514191 W
SUMMARY OF INVENTION
Technical Problem
An object of the present invention is to provide a microorganism capable of efficiently producing valine from a sugar, and a process for efficiently producing valine from a sugar.
Solution to Problem
A coryneform bacterium decomposes glucose into pyruvate through glycolysis. The coryneform bacterium further metabolizes the pyruvate into 2-acetolactate via acetohydroxy acid synthase, metabolizes the 2-acetolactate into 2,3-dihydroxyisovalerate via acetohydroxy acid isomeroreductase, metabolizes the 2,3-dihydroxyisovalerate into 2-ketoisovalerate in the presence of dihydroxy acid dehydratase, and metabolizes the 2-ketoisovalerate into valine via transaminase.
The present inventors found that a transformant constructed by introducing one or more of an acetohydroxy acid synthase gene consisting of the base sequence of SEQ ID NO: 37, an acetohydroxy acid isomeroreductase gene consisting of the base sequence of SEQ ID NO: 57, and a leucine dehydrogenase gene consisting of the base sequence of SEQ ID NO: 40 into a coryneform bacterium efficiently produces valine from a sugar as a raw material.
The DNA consisting of the base sequence of SEQ ID NO: 37 is a mutant of an acetohydroxy acid synthase gene (ilvBN gene) of Corynebacterium glutamicum, and the DNA consisting of the base sequence of SEQ ID NO: 57 is a mutant of an acetohydroxy acid isomeroreductase gene (ilvC gene) of Corynebacterium glutamicum. 
The DNA consisting of the base sequence of SEQ ID NO: 40 encodes leucine dehydrogenase capable of catalyzing conversion of 2-ketoisovalerate into valine, which is usually catalyzed by transaminase in a coryneform bacterium. Whereas transaminase transfers an amino group from another amino acid to 2-ketoisovalerate, leucine dehydrogenase can transfer an amino group from inorganic NH4+ to 2-ketoisovalerate.
The inventors also found that the transformant can further efficiently produce valine in the case where the lactate dehydrogenase gene on the chromosome of the coryneform bacterium as the host is disrupted or deleted.
Further, the present inventors found that the transformant has a higher valine productivity when the growth is substantially arrested in a reaction mixture under reducing conditions as compared with the case when the growth is allowed in an aerobic reaction mixture.
The present invention, which has been completed based on the above-mentioned findings, provides the following transformant and process for producing valine.
[1] A transformant obtainable by introducing one or more of the following DNAs (a), (b), and (c) into a coryneform bacterium as a host.
(a) A DNA which encodes acetohydroxy acid synthase derived from Corynebacterium glutamicum and which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the DNA, or a DNA which hybridizes to a DNA consisting of a complementary base sequence of the DNA under stringent conditions and which encodes a polypeptide having acetohydroxy acid synthase activity.

(b) A DNA which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum and which has mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the DNA, or a DNA which hybridizes to a DNA consisting of a complementary base sequence of the DNA under stringent conditions and which encodes a polypeptide having acetohydroxy acid isomeroreductase activity.

(c) A DNA which encodes leucine dehydrogenase derived from Lysinibacillus sphaericus, or a DNA which hybridizes to a DNA consisting of a complementary base sequence of the DNA under stringent conditions and which encodes a polypeptide having leucine dehydrogenase activity.

[2] The transformant according to the above [1], wherein the DNA which encodes acetohydroxy acid synthase derived from Corynebacterium glutamicum and which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the DNA is a DNA consisting of the base sequence of SEQ ID NO: 37;

the DNA which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum and which has mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the DNA is a DNA consisting of the base sequence of SEQ ID NO: 57; and

the DNA which encodes leucine dehydrogenase derived from Lysinibacillus sphaericus is a DNA consisting of the base sequence of SEQ ID NO: 40.

[3] The transformant according to the above [1] or [2], wherein a DNA which encodes dihydroxy acid dehydratase derived from Corynebacterium glutamicum or a DNA which hybridizes to a DNA consisting of a complementary base sequence of the DNA under stringent conditions and which encodes a polypeptide having dihydroxy acid dehydratase activity is also introduced thereinto.

[4] The transformant according to any one of the above [1] to [3], wherein the lactase dehydrogenase gene of the coryneform bacterium as the host is disrupted or deleted.

[5] Corynebacterium glutamicum VAL4 (Accession Number: NITE BP-1122), which is a transformant of Corynebacterium glutamicum. 

[6] A process for producing valine, which comprises a step of allowing the transformant of any one of the above [1] to [5] to react in a reaction mixture containing a sugar under reducing conditions, and a step of recovering valine from the reaction mixture.

[7] The process according to the above [6], wherein the transformant does not substantially grow in the reaction step.

Advantageous Effects of Invention
The transformant of the present invention is a coryneform bacterium having one or more of an acetohydroxy acid synthase gene of a specific sequence, an acetohydroxy acid isomeroreductase gene of a specific sequence, and a leucine dehydrogenase gene of a specific sequence, introduced thereinto, and therefore is capable of producing valine from a sugar more efficiently than conventional transformants do.



BRIEF DESCRIPTION OF DRAWINGS
FIG. 1 shows the constructs of vectors used in Examples.
FIG. 2 shows the constructs of vectors used in Examples.



DESCRIPTION OF EMBODIMENTS
Hereinafter, the present invention will be described in detail.
(I) Transformant
Host
The coryneform bacterium is a group of microorganisms defined in Bergey's Manual of Determinative Bacteriology, Vol. 8, 599 (1974), and is not particularly limited as long as it grows under normal aerobic conditions. The specific examples include Corynebacterium, Brevibacterium, Arthrobacter, Mycobacterium and Micrococcus. Among the coryneform bacteria, Corynebacterium is preferred.
Examples of the Corynebacterium include Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium ammoniagenes, Corynebacterium halotolerance, and Corynebacterium alkanolyticum. 
Among them, Corynebacterium glutamicum is preferred for safety and high valine production. Examples of preferred strains include Corynebacterium glutamicum R (FERM P-18976), ATCC13032, ATCC13869, ATCC13058, ATCC13059, ATCC13060, ATCC13232, ATCC13286, ATCC13287, ATCC13655, ATCC13745, ATCC13746, ATCC13761, ATCC14020, ATCC31831, MJ-233 (FERM BP-1497), and MJ-233AB-41 (FERM BP-1498). Among them, strains R (FERM P-18976), ATCC13032, and ATCC13869 are preferred.
According to molecular biological classification, names of some species of coryneform bacteria, such as Brevibacterium flavum, Brevibacterium lactofermentum, Brevibacterium divaricatum, and Corynebacterium lilium are standardized to Corynebacterium glutamicum (Liebl, W. et al., Transfer of Brevibacterium divaricatum DSM 20297T, “Brevibacterium flavum” DSM 20411, “Brevibacterium lactofermentum” DSM 20412 and DSM 1412, and Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns. Int. J. Syst. Bacteriol. 41: 255-260. (1991); and Kazuo Komagata et al., “Classification of the coryneform group of bacteria”, Fermentation and industry, 45: 944-963 (1987)).
Brevibacterium lactofermentum ATCC13869, Brevibacterium flavum MJ-233 (FERM BP-1497) and MJ-233AB-41 (FERM BP-1498), etc. of the old classification are also suitable as Corynebacterium glutamicum. 
Examples of the Brevibacterium include Brevibacterium ammoniagenes (for example, ATCC6872).
Examples of the Arthrobacter include Arthrobacter globiformis (for example, ATCC8010, ATCC4336, ATCC21056, ATCC31250, ATCC31738 and ATCC35698).
Examples of the Mycobacterium include Mycobacterium bovis (for example, ATCC19210 and ATCC27289).
Examples of the Micrococcus include Micrococcus freudenreichii (for example, NO. 239 (FERM P-13221)), Micrococcus leuteus (for example, NO. 240 (FERM P-13222)), Micrococcus ureae (for example, IAM1010), and Micrococcus roseus (for example, IF03764).
The coryneform bacteria may be, let alone a wild strain, a mutant thereof or an artificial recombinant thereof. Examples thereof include disruptants in which a gene of lactate dehydrogenase, phosphoenolpyruvate carboxylase, or malate dehydrogenase is disrupted. Using such a disruptant as a host can improve valine productivity and reduce production of by-products.
Among them, preferred is a disruptant in which a lactate dehydrogenase gene is disrupted. In the disruptant, the lactate dehydrogenase gene is disrupted and the metabolic pathway from pyruvic acid to lactic acid is blocked. Particularly preferred is a disruptant of Corynebacterium glutamicum R (FERM P-18976) strain in which the lactate dehydrogenase gene is disrupted.
Such a disruptant can be prepared based on a conventional gene engineering process. Such a lactate dehydrogenase disruptant and the preparation process thereof are described in WO 2005/010182 A1.
Acetohydroxy Acid Synthase Gene (ilvBN Gene)
Acetohydroxy acid synthase is an enzyme that catalyzes the following reaction.

2 Pyruvic acid→2-acetolactate

In the present invention, as an acetohydroxy acid synthase gene, a DNA of an acetohydroxy acid synthase gene derived from Corynebacterium glutamicum, which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the gene, can be used. In particular, a DNA consisting of the base sequence of SEQ ID NO: 37 is preferred.
Further, in the present invention, a DNA (analog) which hybridizes to a DNA consisting of a complementary base sequence of the DNA of an acetohydroxy acid synthase gene derived from Corynebacterium glutamicum, which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the gene, or a complementary base sequence of SEQ ID NO: 37 under stringent conditions and which encodes a polypeptide having acetohydroxy acid synthase activity can also be used.
The “stringent conditions” as used herein means general conditions, for example, the conditions described in Molecular Cloning, A Laboratory Manual, Second edition, 1989, Vol. 2, p. 11. 45. It means, in particular, conditions where hybridization occurs at a temperature 5 to 10° C. below the melting temperature (Tm) of a perfect hybrid.
Further, in the present invention, a DNA (analog) consisting of a base sequence which has 90% or more, preferably 95% or more, more preferably 98% or more of homology with a DNA which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the gene and which encodes a polypeptide having acetohydroxy acid synthase activity can also be used.
The base sequence homology was calculated using GENETYX Ver. 8 (made by Genetyx).
The acetohydroxy acid synthase activity can be determined by mixing 100 mM potassium phosphate (pH 7.5), 50 mM sodium pyruvate, 10 mM MgCl2, 0.1 mM thiamine pyrophosphate, 0.1 mM flavin adenine dinucleotide, and an enzyme to be tested, and then measuring, as an index, the reduction in the absorbance of pyruvic acid at 333 nm (ε=17.5/M·cm). Activity that produces 1 μmol of 2-acetolactic acid per minute is determined as 1 unit of acetohydroxy acid synthase activity.
Regarding an acetohydroxy acid synthase gene derived from Corynebacterium glutamicum, an analog of a DNA which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the gene or a DNA consisting of the base sequence of SEQ ID NO: 37 can be selected from a DNA library of a different species by, for example, PCR or hybridization using a primer or a probe designed based on these base sequences according to a conventional method, and as a result, a DNA which encodes a polypeptide having acetohydroxy acid synthase activity can be obtained with a high probability.
Acetohydroxy Acid Isomeroreductase Gene (ilvC Gene)
Acetohydroxy acid isomeroreductase is an enzyme that catalyzes the following reaction.

2-Acetolactate→2,3-dihydroxyisovalerate

In the present invention, as an acetohydroxy acid isomeroreductase gene, a DNA of an acetohydroxy acid isomeroreductase gene derived from Corynebacterium glutamicum, which has mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the gene, can be used. In particular, a DNA consisting of the base sequence of SEQ ID NO: 57 is preferred.
Further, in the present invention, as an acetohydroxy acid isomeroreductase gene derived from Corynebacterium glutamicum, a DNA (analog) which hybridizes to a DNA consisting of a complementary base sequence of a DNA having mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the gene or the base sequence of SEQ ID NO: 57 under stringent conditions and which encodes a polypeptide having acetohydroxy acid isomeroreductase activity can also be used.
Further, in the present invention, as an acetohydroxy acid isomeroreductase gene derived from Corynebacterium glutamicum, a DNA (analog) consisting of a base sequence which has 90% or more, preferably 95% or more, more preferably 98% or more of homology with a DNA having mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the gene or the base sequence of SEQ ID NO: 57 and which encodes a polypeptide having acetohydroxy acid isomeroreductase activity can also be used.
The acetohydroxy acid isomeroreductase activity can be determined by mixing 100 mM potassium phosphate (pH 7.5), 10 mM acetolactic acid, 5 mM MgCl2, 0.2 mM NADPH, and an enzyme to be tested, and then measuring, as an index, the reduction in the absorbance of NADPH at 340 nm (ε=6220/M·cm). Activity that produces 1 μmol of 2,3-dihydroxyisovaleric acid per minute is determined as 1 unit of acetohydroxy acid isomeroreductase activity.
Leucine Dehydrogenase Gene
In the present invention, a leucine dehydrogenase gene derived from Lysinibacillus sphaericus can be used. In particular, the DNA consisting of the base sequence of SEQ ID NO: 40 is preferred.
In the present invention, a DNA (analog) which hybridizes to a DNA consisting of a complementary base sequence of the leucine dehydrogenase gene (DNA) derived from Lysinibacillus sphaericus or the base sequence of SEQ ID NO: 40 under stringent conditions and which encodes a polypeptide having leucine dehydrogenase activity can also be used.
Further, in the present invention, a DNA (analog) consisting of a base sequence which has 90% or more, preferably 95% or more, more preferably 98% or more of homology with the base sequence of the leucine dehydrogenase gene (DNA) derived from Lysinibacillus sphaericus or the base sequence of SEQ ID NO: 40 and which encodes a polypeptide having leucine dehydrogenase activity can also be used.
The leucine dehydrogenase activity can be determined by mixing 100 mM glycine/NaOH (pH 9.5), 10 mM 2-ketoisovaleric acid, 200 mM ammonium chloride, 0.2 mMNADH, and an enzyme to be tested, and then measuring, as an index, the reduction in the absorbance of NADH at 340 nm (ε=6220/M·cm). Activity that produces 1 μmol of valine per minute is determined as 1 unit of leucine dehydrogenase activity.
As described above, the transformant of the present invention is constructed by introducing one or more of the following genes (a) to (c) into a coryneform bacterium as a host.
(a) An acetohydroxy acid synthase gene derived from Corynebacterium glutamicum, which has a mutation changing the glycine at position 156 to glutamic acid (G156E) in an amino acid sequence encoded by the gene, or an analog thereof.
(b) An acetohydroxy acid isomeroreductase gene derived from Corynebacterium glutamicum, which has mutations changing the serine at position 34 to glycine (S34G), the leucine at position 48 to glutamic acid (L48E), and the arginine at position 49 to phenylalanine (R49F) in an amino acid sequence encoded by the gene, or an analog thereof.

(c) A leucine dehydrogenase gene derived from Lysinibacillus sphaericus, or an analog thereof.

The combination of transgenes may be any of combination of (a) and (b); combination of (a) and (c); combination of (b) and (c); and combination of (a), (b), and (c). Among them, the combination of (a), (b), and (c) is preferred.
Dihydroxy Acid Dehydratase Gene
In any case, it is preferred that a dihydroxy acid dehydratase gene (in particular, a DNA consisting of the base sequence of SEQ ID NO: 43) derived from Corynebacterium glutamicum or an analog thereof is also introduced into the host for further efficient valine production.
Examples of the analog include a DNA which hybridizes to a DNA consisting of a complementary base sequence of SEQ ID NO: 43 under stringent conditions and which encodes a polypeptide having dihydroxy acid dehydratase activity; and a DNA which has 90% or more, preferably 95% or more, more preferably 98% or more homology with the base sequence of SEQ ID NO: 43 and which encodes a polypeptide having dihydroxy acid dehydratase activity.
The dihydroxy acid dehydratase activity can be measured using the increase in absorbance at 340 nm associated with the increase in 2-ketoisovaleric acid formed from 2,3-dihydroxyisovaleric acid (Dennis H. F., et. al., The role and properties of the iron-sulfur cluster in Escherichia coli dihydroxy-acid dehydratase. J. Biol. Chem., 268: 14732-14742 (1993)). As the reaction mixture for the activity measurement, a 50 mM tris-hydrochloric acid buffer solution at pH 8.0 with 10 mM magnesium chloride and 6 mM 2,3-dihydroxyisovaleric acid was used. To the reaction mixture, Enzyme Liquid 1 was added at 30° C. to start the reaction. From the difference of the slope of decrease in absorbance between the reaction mixture and a reaction mixture without 2,3-dihydroxyisovaleric acid, the activity value can be calculated using a molar absorbance coefficient of 190 M−1 cm−1.
Construction of Vector for Transformation
The DNA which encodes acetohydroxy acid synthase, the DNA which encodes acetohydroxy acid isomeroreductase, and the DNA which encodes leucine dehydrogenase are each amplified by PCR and then cloned into a suitable vector which is replicable in a host.
The plasmid vector may be any plasmid vector as long as it comprises a gene responsible for autonomously replicating function in a coryneform bacterium. Specific examples of the plasmid vector include pAM330 derived from Brevibacterium lactofermentum 2256 (JP 58-67699 A; Miwa, K. et al., Cryptic plasmids in glutamic acid-producing bacteria. Agric. Biol. Chem. 48:2901-2903 (1984); and Yamaguchi, R. et al., Determination of the complete nucleotide sequence of the Brevibacterium lactofermentum plasmid pAM330 and the analysis of its genetic information. Nucleic Acids Symp. Ser. 16:265-267 (1985)); pHM1519 derived from Corynebacterium glutamicum ATCC13058 (Miwa, K. et al., Cryptic plasmids in glutamic acid-producing bacteria. Agric. Biol. Chem. 48:2901-2903 (1984)) and pCRY30 derived from the same (Kurusu, Y. et al., Identification of plasmid partition function in coryneform bacteria. Appl. Environ. Microbiol. 57:759-764 (1991)); pCG4 derived from Corynebacterium glutamicum T250 (JP 57-183799 A; and Katsumata, R. et al., Protoplast transformation of glutamate-producing bacteria with plasmid DNA. J. Bacteriol., 159:306-311 (1984)), pAG1, pAG3, pAG14 and pAG50 derived from the same (JP 62-166890 A), and pEK0, pEC5 and pEKEx1 derived from the same (Eikmanns, B. J. et al., A family of Corynebacterium glutamicum/Escherichia coli shuttle vectors for cloning, controlled gene expression, and promoter probing. Gene, 102:93-98 (1991)); etc.
Examples of a preferred promoter include promoter PgapA as a promoter of the glyceraldehyde-3-phosphate dehydrogenase A gene (gapA), promoter Pmdh as a promoter of the malate dehydrogenase gene (mdh), and promoter PldhA as a promoter of lactate dehydrogenase A gene (ldhA), all of which are derived from Corynebacterium glutamicum R, and among them, PgapA is preferred.
Examples of a preferred terminator include terminator rrnB T1T2 of Escherichia coli rRNA operon, terminator trpA of Escherichia coli, and terminator trp of Brevibacterium lactofermentum, and among them, terminator rrnB T1T2 is preferred.
Transformation
As a method of transformation, any publicly known method can be used without limitation. Examples of such a known method include the calcium chloride/rubidium chloride method, the calcium phosphate method, DEAE-dextran transfection, and electroporation. Among them, preferred for a coryneform bacterium is electroporation, which can be performed by a known method (Kurusu, Y. et al., Electroporation-transformation system for Coryneform bacteria by auxotrophic complementation, Agric. Biol. Chem. 54:443-447 (1990); and Vertes A. A. et al., Presence of mrr- and mcr-like restriction systems in Coryneform bacteria. Res. Microbiol. 144:181-185 (1993)).
The transformant is cultured using a culture medium usually used for culture of microorganisms. The culture medium may be a natural or synthetic medium containing a carbon source, a nitrogen source, inorganic salts, other nutritional substances, etc.
Examples of the carbon source include carbohydrates and sugar alcohols such as glucose, fructose, sucrose, mannose, maltose, mannitol, xylose, arabinose, galactose, starch, molasses, sorbitol and glycerol; organic acids such as acetic acid, citric acid, lactic acid, fumaric acid, maleic acid and gluconic acid; and alcohols such as ethanol and propanol. Hydrocarbons, such as normal paraffin, etc. may also be used as desired. These carbon sources may be used alone or as a mixture of two or more thereof. The concentration of these carbon sources in the culture medium is usually about 0.1 to 10 w/v %.
Examples of the nitrogen source include inorganic or organic ammonium compounds, such as ammonium chloride, ammonium sulfate, ammonium nitrate, and ammonium acetate; urea; aqueous ammonia; sodium nitrate; and potassium nitrate. Nitrogen-containing organic compounds, such as corn steep liquor, meat extract, peptone, N—Z-amine, protein hydrolysate, amino acid, etc. may also be used. These nitrogen sources may be used alone or as a mixture of two or more thereof. The concentration of these nitrogen sources in the culture medium varies depending on the kind of the nitrogen compound, but is usually about 0.1 to 10 w/v %.
Examples of the inorganic salts include potassium dihydrogen phosphate, dipotassium hydrogenphosphate, magnesium sulfate, sodium chloride, iron(II) nitrate, manganese sulfate, zinc sulfate, cobalt sulfate, and calcium carbonate. These inorganic salts may be used alone or as a mixture of two or more thereof. The concentration of the inorganic salts in the culture medium varies depending on the kind of the inorganic salts, but is usually about 0.01 to 1 w/v %.
Examples of the nutritional substances include meat extract, peptone, polypeptone, yeast extract, dry yeast, corn steep liquor, skim milk powder, defatted soybean hydrochloric acid hydrolysate, and extract from animals, plants or microorganisms, and degradation products thereof. The concentration of the nutritional substances in the culture medium varies depending on the kind of the nutritional substances, but is usually about 0.1 to 10 w/v %. Further, vitamins may be added as needed. Examples of the vitamins include biotin, thiamine (vitamin B1), pyridoxine (vitamin B6), pantothenic acid, inositol, nicotinic acid, etc.
The pH of the culture medium is preferably about 5 to 8.
Examples of the preferable microbial culture medium include A medium (Inui, M. et al., Metabolic analysis of Corynebacterium glutamicum during lactate and succinate productions under oxygen deprivation conditions. J. Mol. Microbiol. Biotechnol. 7:182-196 (2004)), BT medium (Omumasaba, C. A. et al., Corynebacterium glutamicum glyceraldehyde-3-phosphate dehydrogenase isoforms with opposite, ATP-dependent regulation. J. Mol. Microbiol. Biotechnol. 8:91-103 (2004)), etc.
The culture temperature is about 15 to 45° C., and the culture period is about 1 to 7 days.
Disruption or Deletion in Host Chromosomal Gene
As described above, in the coryneform bacterium as a host, one or more of the lactate dehydrogenase gene, the phosphoenolpyruvate carboxylase gene, the pyruvate carboxylase gene, and the maleate dehydrogenase gene preferably are disrupted or deleted for further efficient valine production.
Replacement of a gene on the chromosome with the corresponding gene having an disruption or deletion can be achieved by creating a gene with deletion mutation for not allowing production of a normally functioning enzyme protein, and transforming a bacterium with a DNA comprising the mutated gene for recombination in which the gene on the chromosome and the mutated gene are exchanged. An enzyme protein encoded by a gene having a disruption or deletion, even when produced, has a conformation different from that of the wild type, and has no or reduced function. The gene deletion or gene disruption by way of gene replacement through such homologous recombination has already been established, and examples thereof include a method using a plasmid containing a temperature sensitive replication origin or a plasmid capable of conjugal transfer, and a method using a suicide vector not having a replication origin that works in a host (U.S. Pat. No. 6303383 and JP 05-007491 A).
Specifically, for example, a coryneform bacterium in which the lactate dehydrogenase gene is disrupted or deleted can be obtained by the method described in J. Mol. Microbiol. Biotechnol., Vol. 8, 243-254 (2004).
(II) Process for Producing Valine
Valine can be produced by a process comprising a step of allowing the above-described transformant of the present invention to react in a reaction mixture containing a sugar under reducing conditions, and a step of recovering valine from the reaction mixture.
Growth of Microorganism
Before the reaction, the transformant is preferably cultured and grown under aerobic conditions at about 25 to 38° C. for about 12 to 48 hours.
Culture Medium
The culture medium used for aerobic culture of the transformant before the reaction may be a natural or synthetic medium containing a carbon source, a nitrogen source, inorganic salts, other nutritional substances, etc.
Examples of the carbon source that can be used include sugars (monosaccharides such as glucose, fructose, mannose, xylose, arabinose, and galactose; disaccharides such as sucrose, maltose, lactose, cellobiose, xylobiose, and trehalose; polysaccharides such as starch; and molasses); sugar alcohols such as mannitol, sorbitol, xylitol, and glycerol; organic acids such as acetic acid, citric acid, lactic acid, fumaric acid, maleic acid and gluconic acid; alcohols such as ethanol and propanol; and hydrocarbons such as normal paraffin.
These carbon sources may be used alone or as a mixture of two or more thereof.
Examples of the nitrogen source that can be used include inorganic or organic ammonium compounds, such as ammonium chloride, ammonium sulfate, ammonium nitrate, and ammonium acetate; urea; aqueous ammonia; sodium nitrate; and potassium nitrate. Nitrogen-containing organic compounds, such as corn steep liquor, meat extract, peptone, N—Z-amine, protein hydrolysate, amino acid, etc. may also be used. These nitrogen sources may be used alone or as a mixture of two or more thereof. The concentration of these nitrogen sources in the culture medium varies depending on the kind of the nitrogen compound, but is usually about 0.1 to 10 w/v %.
Examples of the inorganic salts include potassium dihydrogen phosphate, dipotassium hydrogenphosphate, magnesium sulfate, sodium chloride, iron(II) nitrate, manganese sulfate, zinc sulfate, cobalt sulfate, and calcium carbonate. These inorganic salts may be used alone or as a mixture of two or more thereof. The concentration of the inorganic salts in the culture medium varies depending on the kind of the inorganic salts, but is usually about 0.01 to 1 w/v %.
Examples of the nutritional substances include meat extract, peptone, polypeptone, yeast extract, dry yeast, corn steep liquor, skim milk powder, defatted soybean hydrochloric acid hydrolysate, and extract from animals, plants or microorganisms, and degradation products thereof. The concentration of the nutritional substances in the culture medium varies depending on the kind of the nutritional substances, but is usually about 0.1 to 10 w/v %.
Further, vitamins may be added as needed. Examples of the vitamins include biotin, thiamine (vitamin B1), pyridoxine (vitamin B6), pantothenic acid, inositol, nicotinic acid, etc.
The pH of the culture medium is preferably about 6 to 8.
Specific examples of the preferable culture medium for coryneform bacteria include A medium (Inui, M. et al., Metabolic analysis of Corynebacterium glutamicum during lactate and succinate productions under oxygen deprivation conditions. J. Mol. Microbiol. Biotechnol. 7:182-196 (2004)), BT medium (Omumasaba, C. A. et al., Corynebacterium glutamicum glyceraldehyde-3-phosphate dehydrogenase isoforms with opposite, ATP-dependent regulation. J. Mol. Microbiol. Biotechnol. 8:91-103 (2004)), etc. Such a culture medium can be used after prepared so as to contain a sugar at a concentration in the above-mentioned range.
Reaction Mixture
The reaction mixture may be a natural or synthetic reaction mixture containing a carbon source, a nitrogen source, inorganic salts, other nutritional substances, etc.
As the carbon source, a sugar is used. Examples of the sugar include monosaccharides such as glucose, fructose, mannose, xylose, arabinose, and galactose; disaccharides such as sucrose, maltose, lactose, cellobiose, xylobiose, and trehalose; polysaccharides such as starch; and molasses. In addition, a saccharified liquid which is obtainable by saccharifying non-edible agricultural waste including rice straw, bagasse, and corn stover; or energy crops including switchgrass, napier grass, and Miscanthus and which contains two or more kinds of sugars, such as glucose, xylose, etc., can also be used. Among them, monosaccharides are preferred, and glucose is more preferred. In addition, glucose-containing sugars (disaccharides, oligosaccharides, and polysaccharides) are also preferred.
As the carbon source, besides sugars, sugar alcohols such as mannitol, sorbitol, xylitol, and glycerol; organic acids such as acetic acid, citric acid, lactic acid, fumaric acid, maleic acid and gluconic acid; alcohols such as ethanol and propanol; and hydrocarbons such as normal paraffin can also be used.
These carbon sources may be used alone or as a mixture of two or more thereof.
The concentration of the sugar in the reaction mixture is preferably about 1 to 20 w/v %, more preferably about 2 to 10 w/v %, and still more preferably about 2 to 5 w/v %.
The total concentration of the carbon sources including the sugar in the reaction mixture is usually about 2 to 5 w/v %.
Examples of the nitrogen source that can be used include inorganic or organic ammonium compounds, such as ammonium chloride, ammonium sulfate, ammonium nitrate, and ammonium acetate; urea; aqueous ammonia; sodium nitrate; and potassium nitrate. Nitrogen-containing organic compounds, such as corn steep liquor, meat extract, peptone, N—Z-amine, protein hydrolysate, amino acid, etc. may also be used. These nitrogen sources may be used alone or as a mixture of two or more thereof. The concentration of these nitrogen sources in the reaction mixture varies depending on the kind of the nitrogen compound, but is usually about 0.1 to 10 w/v %.
Examples of the inorganic salts include potassium dihydrogen phosphate, dipotassium hydrogenphosphate, magnesium sulfate, sodium chloride, iron(II) nitrate, manganese sulfate, zinc sulfate, cobalt sulfate, and calcium carbonate. These inorganic salts may be used alone or as a mixture of two or more thereof. The concentration of the inorganic salts in the reaction mixture varies depending on the kind of the inorganic salts, but is usually about 0.01 to 1 w/v %.
Further, vitamins may be added as needed. Examples of the vitamins include biotin, thiamine (vitamin B1), pyridoxine (vitamin B6), pantothenic acid, inositol, nicotinic acid, etc.
The pH of the reaction mixture is preferably about 6 to 8.
Specific examples of the preferable culture medium for coryneform bacteria include the above-mentioned BT medium, etc. Such a culture medium can be used after prepared so as to contain a sugar at a concentration in the above-mentioned range.
Reaction Conditions
The reaction temperature, that is, the temperature for keeping the transformant alive during the reaction is preferably about 20 to 50° C., and more preferably about 25 to 47° C. When the temperature is in the above range, valine can be efficiently produced.
The reaction period is preferably about 1 to 7 days, and more preferably about 1 to 3 days.
The culture may be a batch process, a fed-batch process, or a continuous process. Among them, a batch process is preferred.
The reaction may be performed under aerobic conditions or reducing conditions.
<Reducing Conditions>
Under reducing conditions, coryneform bacteria do not substantially grow and can further efficiently produce valine.
The “reducing conditions” is defined based on the oxidation-reduction potential of the reaction mixture. The oxidation-reduction potential of the reaction mixture is preferably about −200 mV to −500 mV, and more preferably about −250 mV to −500 mV.
The reducing conditions of the reaction mixture can be simply estimated with the use of resazurin indicator (in reducing conditions, decolorization from blue to colorless is observed). However, for precise measurement, a redox-potential meter (for example, ORP Electrodes made by BROADLEY JAMES) is used.
As a method of preparing a reaction mixture under reducing conditions, any publicly known method can be used without limitation. For example, as a liquid medium for preparation of the reaction mixture, an aqueous solution for a reaction mixture may be used instead of distillated water or the like. As reference for preparation of the aqueous solution for a reaction mixture, for example, the method for preparing a culture medium for strictly anaerobic microorganisms, such as sulfate-reducing microorganisms (Pfennig, N. et al.: The dissimilatory sulfate-reducing bacteria, In The Prokaryotes, A Handbook on Habitats, Isolation and Identification of Bacteria, Ed. by Starr, M. P. et al. Berlin, Springer Verlag, 926-940, 1981, or Nogeikagaku Jikkensho, Ed. by Kyoto Daigaku Nogakubu Nogeikagaku Kyoshitsu, Vol. 3, Sangyo Tosho, 1990, Issue 26) may be used, and such a method provides an aqueous solution under desired reducing conditions.
Specifically, by treating distillated water or the like with heat or under reduced pressure for removal of dissolved gases, an aqueous solution for a reaction mixture under reducing conditions can be obtained. In this case, for removal of dissolved gases, especially dissolved oxygen, distillated water or the like may be treated under reduced pressure of about 10 mmHg or less, preferably about 5 mmHg or less, more preferably about 3 mmHg or less, for about 1 to 60 minutes, preferably for about 5 to 40 minutes.
Alternatively, by adding a suitable reducing agent (for example, thioglycolic acid, ascorbic acid, cysteine hydrochloride, mercaptoacetic acid, thiol acetic acid, glutathione, sodium sulfide, etc.), an aqueous solution for a reaction mixture under reducing conditions can be prepared.
These methods may be suitably combined to prepare an effective aqueous solution for a reaction mixture under reducing conditions.
It is preferred to maintain the reducing conditions of the reaction mixture during the reaction. For maintenance of reducing conditions, it is preferred that oxygen from the outside of the reaction system is prevented to the utmost extent from entering the system. Specific examples of the method employed for this purpose include a method comprising encapsulating the reaction system with inert gas, such as nitrogen gas, carbon dioxide gas, etc. In some cases, for allowing the metabolic functions in the cells of the aerobic bacterium of the present invention to work effectively during the reaction, addition of a solution of various nutrients or a reagent solution for adjusting and maintaining the pH of the reaction system may be needed. In such a case, for more effective prevention of oxygen incorporation, it is effective to remove oxygen in the solutions to be added, in advance.
Recovery of Valine
Through the culture performed in the above manner, valine is produced in the reaction mixture. Valine can be recovered by collecting the reaction mixture, and it is also feasible to isolate valine from the reaction mixture by a known method. Examples of such a known method include an ion-exchange resin method, a concentration method, a crystallization method, an activated carbon adsorption elution method, etc.
EXAMPLES
Hereinafter, the present invention will be described in more detail by way of Examples, but the present invention is not limited thereto.
Example 1
Cloning of Mutated Acetohydroxy Acid Synthase Gene
(1) Preparation of Valine Analog Resistant Strain
Corynebacterium glutamicum R was exposed to 300 μg/mL of N-methyl-N′-nitro-N-nitrosoguanidine at 30° C. for 1 hour, and then cultured in A Medium (2 g of (NH2)2CO3 7 g of (NH4)2SO4, 0.5 g of KH2PO4, 0.5 g of K2HPO4, 0.5 g of MgSO4.7H2O, 1 mL of 0.06% (w/v) Fe2SO4.7H2O+0.042% (w/v) MnSO4.2H2O, 1 mL of 0.02% (w/v) biotin solution, 2 mL of 0.01% (w/v) thiamin solution, 2 g of yeast extract, and 7 g of vitamin assay casamino acid were dissolved in 1 L of distilled water) until the concentration became about 109 cells/mL. The bacterial cells were collected, washed with a minimal medium (BT medium), and then applied onto a BT plate medium containing 4% glucose and 4% DL-α-aminobutyrate, which is a valine analog, to be cultured at 30° C. for 5 days.
The mutant strain grown on the plate medium containing the valine analog was inoculated into a test tube containing 10 mL of A liquid medium and was aerobically cultured with shaking at 33° C. for 16 hours. The cultured bacterial cells were collected by centrifugation (14,500 rpm at 4° C. for 2 minutes), washed with 2 mL of BT medium (Omumasaba, C. A. et al., Corynebacterium glutamicum glyceraldehyde-3-phosphate dehydrogenase isoforms with opposite, ATP-dependent regulation. J. Mol. Microbiol. Biotechnol. 8:91-103 (2004)), and suspended in 1 mL of BT medium. Subsequently, the cells in the suspension were inoculated into 10 mL of BT medium so that the final concentration was OD610=0.1, and were aerobically cultured with shaking at 33° C. for 48 hours Then, screening for a strain having high L-valine productivity was performed.
For quantitative determination of valine, the culture medium was sampled and centrifuged (14,500 rpm at 4° C. for 1 minute), and the obtained supernatant was analyzed by an amino acid analysis system (Prominence, made by Shimadzu). The analysis conditions are shown in Table 1 below.







TABLE 1





Measurement conditions of amino acid analysis system


















Guard column
ISC-30/S0504 (Na)



Column for amino acid analysis
Shim-pack VP-ODS



Mobile phase
Amino acid mobile phase kit




(Na type)



Column temperature
60° C.



Flow rate
0.6 mL/min



Detection
Spectrofluorometric detector




(RF-10AXL)










(2) Cloning and Base Sequence Determination of Mutated Acetohydroxy Acid Synthase Gene

To extract chromosomal DNA from the obtained mutant having high valine productivity, the bacterium was inoculated, with the use of a platinum loop, into A Medium (2 g of (NH2)2CO, 7 g of (NH4)2SO4, 0.5 g of KH2PO4, 0.5 g of K2HPO4, 0.5 g of MgSO4.7H2O, 1 mL of 0.06% (w/v) Fe2SO4.7H2O+0.042% (w/v) MnSO4.2H2O, 1 mL of 0.02% (w/v) biotin solution, 2 mL of 0.01% (w/v) thiamin solution, 2 g of yeast extract, and 7 g of vitamin assay casamino acid were dissolved in 1 L of distilled water), which was supplemented with 50% (w/v) glucose as a carbon source to a final concentration of 4%, and cultured with shaking at 33° C. until the logarithmic growth phase. After the bacterial cells were collected, chromosomal DNA was recovered from the collected cells with the use of a DNA extraction kit (trade name: GenomicPrep Cells and Tissue DNA Isolation Kit, made by Amersham) according to the instruction manual.
Sequence analysis of the acetohydroxy acid synthase gene using the obtained chromosomal DNA revealed that the glycine at position 156 was replaced with glutamic acid.
Example 2
Cloning and Expression of Valine-Producing Genes
(1) Extraction of Chromosomal DNA from Microorganisms
To extract chromosomal DNA from Corynebacterium glutamicum R (FERM P-18976), the bacterium was inoculated, with the use of a platinum loop, into A medium (2 g of (NH2)2CO, 7 g of (NH4)2SO4, 0.5 g of KH2PO4, 0.5 g of K2HPO4, 0.5 g of MgSO4.7H2O, 1 mL of 0.06% (w/v) Fe2SO4.7H2O+0.042% (w/v) MnSO4.2H2O, 1 mL of 0.02% (w/v) biotin solution, 2 mL of 0.01% (w/v) thiamin solution, 2 g of yeast extract, and 7 g of vitamin assay casamino acid were dissolved in 1 L of distilled water), which was supplemented with 50% (w/v) glucose as a carbon source to a final concentration of 4%, and cultured with shaking at 33° C. until the logarithmic growth phase. After the bacterial cells were collected, chromosomal DNA was recovered from the collected cells with the use of a DNA extraction kit (trade name: GenomicPrep Cells and Tissue DNA Isolation Kit, made by Amersham) according to the instruction manual.
To extract chromosomal DNA from Lysinibacillus sphaericus NBRC 3525, the bacterium was inoculated into NBRC Medium No. 802 (10 g of polypeptone, 2 g of yeast extract, and 1 g of MgSO4.7H2O were dissolved in 1 L of distilled water) with the use of a platinum loop, and cultured with shaking at 30° C. until the logarithmic growth phase. After the bacterial cells were collected, chromosomal DNA was recovered from the collected cells with the use of a DNA extraction kit (trade name: GenomicPrep Cells and Tissue DNA Isolation Kit, made by Amersham) according to the instruction manual.
(2) Construction of Cloning Vectors
Construction of Cloning Vector pCRB21
A DNA fragment comprising a DNA replication origin sequence of pCASE1, a plasmid derived from Corynebacterium casei JCM12072 (hereinafter abbreviated as pCASE1-ori) and a DNA fragment comprising a cloning vector pHSG398 (made by Takara Bio, Inc.) were amplified by the following PCR method.
In the PCR, the following sets of primers were synthesized based on SEQ ID NO: 1 (pCASE1-ori sequence) and SEQ ID NO: 2 (cloning vector pHSG398) for cloning of the pCASE1-ori sequence and the cloning vector pHSG398, and were used.
Primers for pCASE1-Ori Sequence Amplification







(a-1);


(SEQ ID NO: 3)


5′-GGCAG AGATCT AGAACGTCCGTAG-3′


 


(b-1);


(SEQ ID NO: 4)


5′-CGGAA AGATCT GACTTGGTTACGATG-3′






Primers (a-1) and (b-1) each have a BglII restriction enzyme site added thereto.
Primers for cloning vector pHSG398 amplification







(a-2):


(SEQ ID NO: 5)


5′-CAGTGG AGATCT GTCGAACGGAAG-3′


 


(b-2):


(SEQ ID NO: 6)


5′-CCGTT AGATCT AGTTCCACTGAGC-3′






Primers (a-2) and (b-2) each have a BglII restriction enzyme site added thereto.
As the template DNA, total DNA extracted from Corynebacterium casei JCM12072 obtained from Japan Collection of Microorganisms (JCM) and cloning vector pHSG398 (made by Takara Bio, Inc.) were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the pCASE1-ori sequence, a combination of primers (a-1) and (b-1), and for amplification of the cloning vector pHSG398, a combination of primers (a-2) and (b-2) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        pCASE1-ori sequence: 87 seconds
        Cloning vector pHSG398: 134 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed. In the case of the pCASE1-ori sequence, an about 1.5-kb DNA fragment was detected. In the case of the cloning vector pHSG398, an about 2.2-kb DNA fragment was detected.
10 μL of the about 1.5-kb DNA fragment comprising the pCASE1-ori sequence derived from Corynebacterium casei, and 10 μL of the about 2.2-kb DNA fragment comprising the cloning vector pHSG398, both amplified by the above PCR, were each cut with the use of restriction enzyme BglII and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid A.
With the use of the Ligation Liquid A, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme BglII to confirm the inserted fragment. As a result, in addition to an about 2.2-kb DNA fragment of the cloning vector pHSG398, an about 1.5-kb DNA fragment of the pCASE-ori sequence was confirmed.
The cloning vector comprising the pCASE1-ori sequence was named pCRB21.
Construction of Cloning Vector pCRB22
A DNA fragment comprising a DNA replication origin sequence of pCASE1, a plasmid derived from Corynebacterium casei JCM12072 (hereinafter abbreviated as pCASE1-ori) and a DNA fragment comprising a cloning vector pHSG298 (made by Takara Bio, Inc.) were amplified by the following PCR method.
In the PCR, the following sets of primers were synthesized based on SEQ ID NO: 7 (pCASE1-ori sequence) and SEQ ID NO: 8 (cloning vector pHSG298) for cloning of the pCASE1-ori sequence and the cloning vector pHSG298, and were used.
Primers for pCASE1-Ori Sequence Amplification







(a-3);


(SEQ ID NO: 9)


5′-GGCAG AGATCT AGAACGTCCGTAG-3′


 


(b-3);


(SEQ ID NO: 10)


5′-CGGAA AGATCT GACTTGGTTACGATG-3′






Primers (a-3) and (b-3) each have a BglII restriction enzyme site added thereto.
Primers for Cloning Vector pHSG298 Amplification







(a-4):


(SEQ ID NO: 11)


5′-GCTGG AGATCT AGGTTTCCCGAC-3′


 


(b-4):


(SEQ ID NO: 12)


5′-GGGAA AGATCT CGTGCCAGCTGC-3′






Primers (a-4) and (b-4) each have a BglII restriction enzyme site added thereto.
As the template DNA, total DNA extracted from Corynebacterium casei JCM12072 obtained from Japan Collection of Microorganisms (JCM) and cloning vector pHSG298 (made by Takara Bio, Inc.) were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the pCASE1-ori sequence, a combination of primers (a-3) and (b-3), and for amplification of the cloning vector pHSG298, a combination of primers (a-4) and (b-4) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        pCASE1-ori sequence: 150 seconds
        Cloning vector pHSG298: 180 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed. In the case of the pCASE1-ori sequence, an about 1.4-kb DNA fragment was detected. In the case of the cloning vector pHSG298, an about 2.7-kb DNA fragment was detected.
10 μL of the about 1.4-kb DNA fragment comprising the pCASE1-ori sequence derived from Corynebacterium casei, and 10 μL of the about 2.7-kb DNA fragment comprising the cloning vector pHSG298, both amplified by the above PCR, were each cut with the use of restriction enzyme BglII and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid B.
With the use of the Ligation Liquid B, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme BglII to confirm the inserted fragment. As a result, in addition to an about 2.7-kb DNA fragment of the cloning vector pHSG298, an about 1.4-kb DNA fragment of the pCASE-ori sequence was confirmed.
The cloning vector comprising the pCASE1-ori sequence was named pCRB22.
Construction of Cloning Vector pCRB12
A DNA fragment comprising a DNA replication origin sequence of pCG1 (JP 57-134500 A), which is a plasmid replicable in Corynebacterium glutamicum (hereinafter abbreviated as pCG1-ori) and a DNA fragment comprising a cloning vector pHSG298 (made by Takara Bio, Inc.) were amplified by the following PCR method.
In the PCR, the following sets of primers were synthesized based on SEQ ID NO: 13 (pCG1-ori sequence) and SEQ ID NO: 14 (cloning vector pHSG298) for cloning of the pCG1-ori sequence and the cloning vector pHSG298, and were used.
Primers for pCG1-Ori Sequence Amplification









(a-5): 



(SEQ ID NO: 15)



5′-GCGAA AGATCT AGCATGGTCGTC-3′



 



(b-5): 



(SEQ ID NO: 16)



5′-GTGAGC AGATCT GGAACCGTTATC-3′






Primers (a-5) and (b-5) each have a BglII restriction enzyme site added thereto.
Primers for Cloning Vector pHSG298 Amplification









(a-6):



(SEQ ID NO: 17)



5′-GCTGG AGATCT AGGTTTCCCGAC-3′



 



(b-6):



(SEQ ID NO: 18)



5′-GGGAA AGATCT CGTGCCAGCTGC-3′






Primers (a-6) and (b-6) each have a BglII restriction enzyme site added thereto.
As the template DNA, pCG1 (JP 57-134500 A) and cloning vector pHSG298 (made by Takara Bio, Inc.) were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the pCG1-ori sequence, a combination of primers (a-5) and (b-5), and for amplification of the cloning vector pHSG298, a combination of primers (a-6) and (b-6) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        pCG1-ori sequence: 113 seconds
        Cloning vector pHSG298: 127 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed. In the case of the pCG1-ori sequence, an about 1.9-kb DNA fragment was detected. In the case of the cloning vector pHSG298, an about 2.7-kb DNA fragment was detected.
10 μL of the about 1.9-kb DNA fragment comprising the pCG1-ori sequence derived from pCG1, and 10 μL of the about 2.7-kb DNA fragment comprising the cloning vector pHSG298, both amplified by the above PCR, were each cut with the use of restriction enzyme BglII and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid C.
With the use of the Ligation Liquid C, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme BglII to confirm the inserted fragment. As a result, in addition to an about 2.7-kb DNA fragment of the cloning vector pHSG298, an about 1.9-kb DNA fragment of the pCG1-ori sequence was confirmed.
The cloning vector comprising the pCG1-ori sequence was named pCRB12.
Construction of Cloning Vector pCRB207
A DNA fragment comprising a promoter sequence of the gapA gene encoding the glyceraldehyde-3-phosphate dehydrogenase (hereinafter abbreviated as PgapA) derived from Corynebacterium glutamicum R, and a DNA fragment comprising an rrnBT1T2 bidirectional terminator sequence (hereinafter abbreviated as terminator sequence) derived from a cloning vector pKK223-3 (made by Pharmacia) were amplified by the following method.
In the PCR, the following sets of primers were synthesized based on SEQ ID NO: 19 (PgapA sequence) and SEQ ID NO: 20 (terminator sequence) for cloning of the PgapA sequence and the terminator sequence, and were used.
Primers for PgapA Sequence Amplification









(a-7); 



(SEQ ID NO: 21)



5′-CTCT GTCGAC CCGAAGATCTGAAGATTCCTG-3′ 



 



(b-7); 



(SEQ ID NO: 22)



5′-CTCT GTCGAC GGATCC CCATGG



 



TGTGTCTCCTCTAAAGATTGTAGG-3′






Primer (a-7) has a SalI restriction enzyme site added thereto, and primer (b-7) has SalI, BamHI, and NcoI restriction enzyme sites added thereto.
Primers for Terminator Sequence Amplification







(a-8); 


(SEQ ID NO: 23)


5′-CTCT GCATGC CCATGG CTGTTTTGGCGGATGAGAGA-3′


 


(b-8); 


(SEQ ID NO: 24)


5′-CTCT GCATGC TCATGA AAGAGTTTGTAGAAACGCAAAAAGG-3′






Primer (a-8) has SphI and NcoI restriction enzyme sites added thereto, and primer (b-8) has SphI and BspHI restriction enzyme sites added thereto.
As the template DNA, the chromosomal DNA extracted from Corynebacterium glutamicum R (FERM P-18976) and the plasmid pKK223-3 (made by Pharmacia) were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the PgapA sequence, a combination of primers (a-7) and (b-7), and for amplification of the terminator sequence, a combination of primers (a-8) and (b-8) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        PgapA sequence: 45 seconds
        Terminator sequence: 30 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed. In the case of the PgapA sequence, an about 0.6-kb DNA fragment was detected. In the case of the terminator sequence, an about 0.4-kb DNA fragment was detected.
10 μL of the about 0.6-kb DNA fragment comprising the PgapA sequence derived from Corynebacterium glutamicum R, which was amplified by the above PCR, and the about 4.1-kb cloning vector pCRB22 were each cut with the use of restriction enzyme SalI and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid D.
With the use of the Ligation Liquid D, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme SalI to confirm the inserted fragment. As a result, in addition to an about 4.1-kb DNA fragment of the cloning vector pCRB22, an about 0.6-kb DNA fragment of the PgapA sequence was confirmed.
The cloning vector comprising the PgapA sequence was named pCRB206.
10 μL of the about 0.4-kb DNA fragment comprising the terminator sequence derived from the plasmid pKK223-3, which was amplified by the above PCR, was cut with the use of restriction enzymes NcoI and BspHI, 2 μL of the above cloning vector pCRB206 was cut with the use of restriction enzyme NcoI, and both were processed at 70° C. for 10 minutes for deactivation of the restriction enzymes. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid E.
With the use of the Ligation Liquid E, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of the restriction enzyme to confirm the inserted fragment. As a result, in addition to an about 4.7-kb DNA fragment of the cloning vector pCRB206, an about 0.4-kb DNA fragment of the terminator sequence was confirmed.
The cloning vector comprising the rrnBT1T2 terminator sequence was named pCRB207.
(3) Cloning of Valine-Producing Genes
Cloning of Valine-Producing Genes Derived from Corynebacterium glutamicum 
A DNA fragment comprising the ilvBN gene which encodes acetohydroxy acid synthase, a DNA fragment comprising the ilvC gene which encodes acetohydroxy acid isomeroreductase, a DNA fragment comprising the ilvD gene which encodes dihydroxy acid dehydratase, and a DNA fragment comprising the ilvE gene which encodes transaminase, all of which are derived from Corynebacterium glutamicum, were amplified by the PCR method as described below.
In the PCR, the following sets of primers were synthesized based on SEQ ID NO: 25 (the ilvBN gene of Corynebacterium glutamicum), SEQ ID NO: 26 (the ilvC gene of Corynebacterium glutamicum), SEQ ID NO: 27 (the ilvD gene of Corynebacterium glutamicum), and SEQ ID NO: 28 (the ilvE gene of Corynebacterium glutamicum) with the use of “394 DNA/RNA Synthesizer” made by Applied Biosystems for cloning of the ilvBN gene, the ilvC gene, the ilvD gene, and the ilvE gene, and were used.
Primers for ilvBN Gene Amplification









(a-9);



(SEQ ID NO: 29)



5′-CTCT TCATGA ATGTGGCAGCTTCTCAAC-3′



 



(b-9);



(SEQ ID NO: 30)



5′-CTCT TCATGA TTAGATCTTGGCCGGAGC-3′






Primers (a-9) and (b-9) each have a BspHI restriction enzyme site added thereto.
Primers for ilvC Gene Amplification









(a-10); 



(SEQ ID NO: 31)



5′-CTCT CCATGG CTATTGAACTGCTTTATGATG-3′ 



 



(b-10); 



(SEQ ID NO: 32)



5′-CTCT CCATGG AGATCTTTAAGCGGTTTCTGCGCGA-3′ 






Primers (a-10) and (b-10) each have an NcoI restriction enzyme site added thereto.
Primers for ilvD Gene Amplification







(a-11); 


(SEQ ID NO: 33)


5′-GA CCCGGG GAGCAGATTTGAAAAGCGCATCATG-3′


 


(b-11);


(SEQ ID NO: 34)


5′-GA CCCGGG GGTACC GTATTTGCAACGGGGAGCTCCACCA-3′






Primer (a-11) has a SmaI restriction enzyme site added thereto, and primer (b-11) has SmaI and KpnI restriction enzyme sites added thereto.
Primers for ilvE Gene Amplification







(a-12); 


(SEQ ID NO: 35)


5′-GA CCCGGG CATCCCATAAAATGGGGCTGACTAG-3′ 


 


(b-12); 


(SEQ ID NO: 36)


5′-GA CCCGGG GAGCTC CCCTGACTCCACCCCCTACGTCTCA-3′






Primer (a-12) has a SmaI restriction enzyme site added thereto, and primer (b-12) has SmaI and SacI restriction enzyme sites added thereto.
Cloning of Valine-Producing Gene Derived from Corynebacterium glutamicum Mutant Having High Valine Productivity
A DNA fragment comprising the ilvBN gene which encodes acetohydroxy acid synthase derived from the Corynebacterium glutamicum mutant having high valine productivity was amplified by the PCR method as described below.
In the PCR, the following set of primers was synthesized based on SEQ ID NO: 37 (the mutated ilvBN gene of Corynebacterium glutamicum) with the use of “394 DNA/RNA Synthesizer” made by Applied Biosystems for cloning of the mutated ilvBN gene, and was used.
Primers for Mutated ilvBN Gene Amplification









(a-13):



(SEQ ID NO: 38)



5′-CTCT TCATGA ATGTGGCAGCTTCTCAAC-3′



 



(b-13):



(SEQ ID NO: 39)



5′-CTCT TCATGA TTAGATCTTGGCCGGAGC-3′






Primers (a-13) and (b-13) each have a BspHI restriction enzyme site added thereto.
Cloning of Valine-Producing Gene Derived from Lysinibacillus sphaericus 
A DNA fragment comprising the leudh gene which encodes leucine dehydrogenase derived from Lysinibacillus sphaericus was amplified by the PCR method as described below.
In the PCR, the following set of primers was synthesized based on SEQ ID NO: 40 (the leudh gene of Lysinibacillus sphaericus) with the use of “394 DNA/RNA Synthesizer” made by Applied Biosystems for cloning of the leudh gene, and was used. Primers for leudh gene amplification







(a-14);


(SEQ ID NO: 41)


5′-ACG CCCGGG AGGAGGTACGGATGGAAATCTTCAAGTATAT-3′ 


 


(b-14); 


(SEQ ID NO: 42)


5′-TCGG CCCGGG GAGCTC TTAACGGCCGTTCAAAATATTTTT-3′






Primer (a-14) has a SmaI restriction enzyme site added thereto, and primer (b-14) has SmaI and SacI restriction enzyme sites added thereto.
As the template DNA for Corynebacterium glutamicum, the chromosomal DNA extracted from Corynebacterium glutamicum R and the Corynebacterium glutamicum mutant having high valine productivity were used. For Lysinibacillus sphaericus, the chromosomal DNA extracted from Lysinibacillus sphaericus NBRC3525 obtained from NITE Biological Resource Center (NBRC) was used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the ilvBN gene of Corynebacterium glutamicum, a combination of primers (a-9) and (b-9); for amplification of the ilvC gene of Corynebacterium glutamicum, a combination of primers (a-10) and (b-10); for amplification of the ilvD gene of Corynebacterium glutamicum, a combination of primers (a-11) and (b-11); for amplification of the ilvE gene of Corynebacterium glutamicum, a combination of primers (a-12) and (b-12); for amplification of the ilvBN gene of the Corynebacterium glutamicum mutant having high valine productivity, a combination of primers (a-13) and (b-13); and for amplification of the leudh gene of Lysinibacillus sphaericus, a combination of primers (a-14) and (b-14) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds

Annealing step: 52° C., 60 seconds

Extension step: 72° C.














Corynebacterium glutamicum ilvBN gene
143 seconds


Corynebacterium glutamicum ilvC gene
 61 seconds


Corynebacterium glutamicum ilvD gene
118 seconds


Corynebacterium glutamicum ilvE gene
 76 seconds


Corynebacterium glutamicum mutant having high valine
143 seconds


productivity ilvBN gene


Lysinibacillus sphaericus leudh gene
 66 seconds









A cycle consisting of the above 3 steps was repeated 30 times.
With the use of 10 μL of the reaction mixture produced above, 0.8% agarose gel electrophoresis was performed. As a result, detected were an about 2.4-kb DNA fragment in the case of the Corynebacterium glutamicum ilvBN gene, an about 1.0-kb DNA fragment in the case of the Corynebacterium glutamicum ilvC gene, an about 2.0-kb DNA fragment in the case of the Corynebacterium glutamicum ilvD gene, an about 1.3-kb DNA fragment in the case of the Corynebacterium glutamicum ilvE gene, an about 2.4-kb DNA fragment in the case of the Corynebacterium glutamicum mutant having high valine productivity ilvBN gene, and an about 1.1-kb DNA fragment in the case of the Lysinibacillus sphaericus leudh gene.
(4) Construction of Valine-Producing Gene Expression Plasmids
Cloning of Valine-Producing Genes to pCRB207
10 μL of the about 2.4-kb DNA fragment comprising the mutated ilvBN gene derived from Corynebacterium glutamicum and 10 μL of the about 1.0-kb DNA fragment comprising the ilvC gene derived from Corynebacterium glutamicum, both of which were amplified by the PCR in the above (3), were cut with the use of restriction enzymes BspHI and NcoI, respectively, and 2 μL of the cloning vector pCRB207 comprising a promoter PgapA was cut with the use of restriction enzyme NcoI. After being processed at 70° C. for 10 minutes for deactivation of the restriction enzyme, the three kinds were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid F.
Further, 10 μL of the about 2.4-kb DNA fragment comprising the mutated ilvBN gene derived from the Corynebacterium glutamicum having high valine productivity and 10 μL of the about 1.0-kb DNA fragment comprising the ilvC gene derived from Corynebacterium glutamicum, both of which were amplified by the PCR in the above (3), were cut with the use of restriction enzymes BspHI and NcoI, respectively, and 2 μL of the cloning vector pCRB207 comprising a promoter PgapA was cut with the use of restriction enzyme NcoI. After being processed at 70° C. for 10 minutes for deactivation of the restriction enzyme, the three kinds were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid G.
With the separate use of the Ligation Liquids F and G, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture medium and cut with the use of the restriction enzyme to confirm the inserted fragment. As a result, in addition to an about 5.1-kb DNA fragment of the plasmid pCRB207, confirmed were an about 3.4-kb inserted fragment in the case of the ilvBN gene and the ilvC gene derived from Corynebacterium glutamicum (Ligation Liquid F), and an about 3.4-kb inserted fragment in the case of the mutated ilvBN gene derived from the Corynebacterium glutamicum having high valine productivity and the ilvC gene derived from Corynebacterium glutamicum (Ligation Liquid G).
The plasmid comprising the ilvBNC gene derived from Corynebacterium glutamicum was named pCRB207-ilvBNC/CG and the plasmid comprising the mutated ilvBNC gene derived from the Corynebacterium glutamicum having high valine productivity was named pCRB207-ilvBNGEC/CG.
Cloning of Valine-Producing Genes to pCRB21
The above-mentioned plasmids pCRB207-ilvBNC/CG and pCRB207-ilvBNGEC/CG were each cut with the use of restriction enzyme BamHI. In each case, after agarose gel electrophoresis, an about 4.4-kb DNA fragment recovered from the agarose gel with the use of QIAquick Gel Extraction Kit (made by QIAGEN), in which fragment a gapA promoter, the ilvBNC gene derived from Corynebacterium glutamicum, and a terminator sequence were ligated; and a DNA fragment obtained from an about 3.7-kb cloning vector pCRB21 cut with the use of BamHI and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme were mixed. To the mixture, 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total amount was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. The resulting liquid was named Ligation Liquid H or I.
With the separate use of the Ligation Liquids H and I, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme BamHI to confirm the inserted fragment. As a result, in addition to an about 3.7-kb DNA fragment of the plasmid pCRB21, confirmed were an about 4.4-kb inserted fragment in the case of the ilvBNC gene derived from Corynebacterium glutamicum (Ligation Liquid H), and an about 3.4-kb inserted fragment in the case of the mutated ilvBN gene derived from the Corynebacterium glutamicum having high valine productivity and the ilvC gene derived from Corynebacterium glutamicum (Ligation Liquid I).
The plasmid comprising the ilvBNC gene derived from Corynebacterium glutamicum was named pCRB-BNC and the plasmid comprising the mutated ilvBNC gene derived from the Corynebacterium glutamicum having high valine productivity was named pCRB-BNGEC (FIG. 1).
Cloning of Valine-Producing Gene to pKK223-3
10 μL of the about 2.0-kb DNA fragment comprising the ilvD gene derived from Corynebacterium glutamicum, 10 μL of the about 1.3-kb DNA fragment comprising the ilvE gene derived from Corynebacterium glutamicum, or 10 μL of the about 1.1-kb DNA fragment comprising the leudh gene derived from Lysinibacillus sphaericus, each of which fragments was amplified by the PCR in the above (3), and 2 μL of the cloning vector pKK223-3 (made by Pharmacia) comprising a tac promoter were each cut with the use of restriction enzyme SmaI and then processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. The resulting liquid was named Ligation Liquid N, O or P.
With the use of each of the Ligation Liquids N, O and P, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of ampicillin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture medium and cut with the use of the restriction enzyme to confirm the inserted fragment. As a result, in addition to an about 4.6-kb DNA fragment of the plasmid pKK223-3, confirmed were an about 2.0-kb inserted fragment in the case of the ilvD gene derived from Corynebacterium glutamicum (Ligation Liquid N), an about 1.3-kb inserted fragment in the case of the ilvE gene derived from Corynebacterium glutamicum (Ligation Liquid O), and an about 1.1-kb inserted fragment in the case of the leudh gene derived from Lysinibacillus sphaericus (Ligation Liquid P).
The plasmid comprising the ilvD gene derived from Corynebacterium glutamicum was named pKK223-3-ilvD/CG, the plasmid comprising the ilvE gene derived from Corynebacterium glutamicum was named pKK223-3-ilvE/CG, and the plasmid comprising the leudh gene derived from Lysinibacillus sphaericus was named pKK223-3-leudh/LS.
Cloning of Valine-Producing Gene to pCRB12
From the above plasmid pKK223-3-ilvD/CG, a DNA fragment comprising the tac promoter and the ilvD gene derived from Corynebacterium glutamicum was amplified by the PCR method as described below.
In the PCR, the following set of primers was synthesized based on the tac promoter and the ilvD gene derived from Corynebacterium glutamicum (SEQ ID NO:43 (Ptac-ilvD sequence)), and was used.
Primers for Ptac-ilvD Gene Amplification







(a-17);


(SEQ ID NO: 44)


5′-ATAT CCTGCAGGCTAGC GCTGTGCAGGTCGTAAATCACT-3′ 


 


(b-17);


(SEQ ID NO: 45)


5′-ATAT GCTAGC T CCTGCAGG TATTTGCAACGGGGAGCTC-3′






Primer (a-17) has Sse8387I and NheI restriction enzyme sites added thereto, and primer (b-17) has NheI and Sse8387I restriction enzyme sites added thereto.
As the template DNA, the above-mentioned plasmid pKK223-3-ilvD/CG was used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the Ptac-ilvD/CG sequence, a combination of primers (a-17) and (b-17) was used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C., 130 seconds
A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed, and an about 2.2-kb DNA fragment of the Ptac-ilvD/CG sequence was detected.
10 μL of the about 2.2-kb DNA fragment amplified by the above PCR, the fragment comprising the tac promoter sequence and the ilvD sequence derived from Corynebacterium glutamicum, and 2 μL of cloning vector pCRB12 were each cut with the use of restriction enzyme Sse8387I and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. This was named Ligation Liquid Q.
With the use of the Ligation Liquid Q, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture medium and cut with the use of restriction enzyme Sse8387I to confirm the inserted fragment. As a result, in addition to an about 3.7-kb DNA fragment of the cloning vector pCRB12, an about 2.2-kb DNA fragment of the Ptac-ilvD/CG sequence (Ligation Liquid Q) was confirmed.
The plasmid comprising the ilvD gene derived from Corynebacterium glutamicum was named pCRB12-ilvD/CG.
From the above plasmids pKK223-3-ilvE/CG and pKK223-3-leudh/LS, a DNA fragment comprising the tac promoter and the ilvE gene derived from Corynebacterium glutamicum and a DNA fragment comprising the tac promoter and the-leudh gene derived from Lysinibacillus sphaericus were respectively amplified by the PCR method as described below.
In the PCR, the following sets of primers were synthesized based on the tac promoter-fused ilvE gene derived from Corynebacterium glutamicum (SEQ ID NO: 46 (Ptac-ilvE sequence)) and the tac promoter-fused leudh gene derived from Lysinibacillus sphaericus (SEQ ID NO: 47 (Ptac-leudh sequence)), and were used.
Primers for Ptac-ilvE Gene Amplification







(a-18);


(SEQ ID NO: 48)


5′-ATAT GCTAGC T CCTGCAGG CTGTGCAGGTCGTAAATCAC-3′


 


(b-18); 


(SEQ ID NO: 49)


5′-ATAT CCTGCAGGCTAGC ATCCCTGACTCCACCCCCTAC-3′






Primer (a-18) has NheI and Sse8387I restriction enzyme sites added thereto, and primer (b-18) has Sse8387I and NheI restriction enzyme sites added thereto.
Primers for Ptac-leudh Gene Amplification







(a-19);


(SEQ ID NO: 50)


5′-ATAT GCTAGC T CCTGCAGG CTGTGCAGGTCGTAAATCAC-3′


 


(b-19); 


(SEQ ID NO: 51)


5′-ATGC CCTGCAGGCTAGC GTTAACGGCCGTTCAAAATAT-3′






Primer (a-19) has NheI and Sse8387I restriction enzyme sites added thereto, and primer (b-19) has Sse8387I and NheI restriction enzyme sites added thereto.
As the template DNA, the above-mentioned plasmid pKK223-3-ilvE/CG and pKK223-3-leudh/LS were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the Ptac-ilvE/CG sequence, a combination of primers (a-18) and (b-18), and for amplification of the Ptac-leudh/LS sequence, a combination of primers (a-19) and (b-19) were used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        Ptac-ilvE/CG, 90 seconds
        Ptac-leudh/LS, 80 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed, and an about 1.5-kb fragment of the Ptac-ilvE/CG sequence and an about 1.3-kb DNA fragment of the Ptac-leudh/LS sequence were detected.
10 μL of the about 1.5-kb DNA fragment comprising the tac promoter-fused ilvE sequence derived from Corynebacterium glutamicum or the 10 μL of the about 1.3-kb DNA fragment comprising the tac promoter-fused leudh sequence derived from Lysinibacillus sphaericus, each of which was amplified by the above PCR, and 2 μL of the pCRB12-ilvD/CG comprising the tac promoter-fused ilvD sequence derived from Corynebacterium glutamicum were each cut with the use of restriction enzyme NheI and processed at 70° C. for 10 minutes for deactivation of the restriction enzyme. Both were mixed, and 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara Bio, Inc.) were added thereto. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. The resulting liquid was named Ligation Liquid R or S.
With the separate use of the Ligation Liquids R and S, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of kanamycin.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzyme NheI to confirm the inserted fragment. As a result, in addition to an about 5.9-kb DNA fragment of the plasmid pCRB12-ilvD/CG comprising the tac promoter-fused ilvD sequence derived from Corynebacterium glutamicum, confirmed were an about 1.5-kb DNA fragment in the case of the Ptac-ilvE sequence (Ligation Liquid R) and an about 1.3-kb DNA fragment in the case of the Ptac-leudh sequence (Ligation Liquid S).
The plasmid comprising the ilvD gene and the ilvE gene derived from Corynebacterium glutamicum was named pCRB-DE. The plasmid comprising the ilvD gene derived from Corynebacterium glutamicum and the leudh gene derived from Lysinibacillus sphaericus was named pCRB-DLD (FIG. 2).
(5) Site-Directed Mutagenesis in Valine-Producing Gene Using PCR
In order to introduce a mutation for improved valine productivity into an ilvC gene which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum, a DNA fragment comprising the ilvBNC sequence derived from Corynebacterium glutamicum and a DNA fragment comprising the ilvBNC sequence derived from the Corynebacterium glutamicum having high valine productivity were amplified by the PCR method as described below.
In the PCR, the following sets of primers were synthesized based on the SEQ ID NO: 52 (ilvC gene) for cloning of the plasmid pCRB-BNC comprising the ilvBNC sequence derived from Corynebacterium glutamicum and the plasmid pCRB-BNGEC comprising the ilvBNC sequence derived from the Corynebacterium glutamicum having high valine productivity, and were used.
Primers for ilvC (S34G) Mutagenesis









(a-15);



(SEQ ID NO: 53)



5′-CGCACACGGCCAGAACC-3′



 



(b-15);



(SEQ ID NO: 54)



5′-GGTTCTGGCCGTGTGCG-3′






The underlined bases are the ones for mutagenesis.
Primers for ilvC (L48E, R49F) Mutagenesis









(a-16);



(SEQ ID NO: 55)



5′-CATTGGTGAGTTCGAGGGC-3′



 



(b-16);



(SEQ ID NO: 56)



5′-GCCCTCGAACTCACCAATG-3′






The underlined bases are the ones for mutagenesis.
(5)-1 ilvC (S34G) Mutagenesis
As the template DNA, the plasmid pCRB-BNC comprising the ilvBNC sequence derived from Corynebacterium glutamicum and the plasmid pCRB-BNGEC comprising the ilvBNC sequence derived from the Corynebacterium glutamicum having high valine productivity were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the pCRB-BNC sequence and the pCRB-BNGEC sequence, a combination of primers (a-15) and (b-15) was used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        pCRB-BNC, 486 seconds
        pCRB-BNGEC, 486 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed, and an about 8.1-kb fragment comprising the pCRB-BNC sequence and an about 8.1-kb DNA fragment comprising the pCRB-BNGEC sequence were detected.
To 10 μL of the about 8.1-kb DNA fragment comprising the pCRB-BNC or 10 μL of the about 8.1-kb DNA fragment comprising the pCRB-BNGEC, each of which was amplified by the above PCR, 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara SHUZO) were added. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. The resulting liquid was named Ligation Liquid J or K.
With the separate use of the Ligation Liquids J and K, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture, and the insertion of the mutation site was confirmed by the sequence analysis of the plasmid.
The plasmid comprising an ilvC gene which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum and which has a mutation changing the serine at position 34 to glycine was named pCRB-BNCSM or pCRB-BNGECSM.
(5)-2 ilvC (L48E, R49F) Mutagenesis
As the template DNA, the pCRB-BNCSM and pCRB-BNGECSM constructed in the above “(5)-1 ilvC(S34G) mutagenesis” were used.
Actual PCR was performed with the use of a Veriti thermal cycler (made by Applied Biosystems) and PrimeSTAR HS DNA Polymerase (made by Takara Bio, Inc.) as a reaction reagent under the conditions described below.
Reaction Mixture:













PrimeSTAR HS DNA
 0.5 μL


Polymerase TM (2.5 U/μL)


5 X PrimeSTAR Buffer
  10 μL


(Mg2+ plus)


dNTP Mixture (2.5 mM each)
  4 μL


Template DNA
  5 μL (DNA content: 1 μg or less)


The above 2 primers*)
 0.5 μL each (final conc.: 1 μM)


Sterile distilled water
29.5 μL





The above ingredients were mixed, and 50 μL of the reaction mixture was subjected to PCR.


*)For amplification of the pCRB-BNCSM sequence and the pCRB-BNGECSM sequence, a combination of primers (a-16) and (b-16) was used.






PCR Cycle:

Denaturation step: 94° C., 60 seconds
Annealing step: 52° C., 60 seconds
Extension step: 72° C.

    
    
        pCRB-BNCSM, 486 seconds
        pCRB-BNGECSM, 486 seconds
    
    


A cycle consisting of the above 3 steps was repeated 30 times.
Using 10 μL of the above-produced reaction mixture, 0.8% agarose gel electrophoresis was performed, and an about 8.1-kb fragment comprising the pCRB-BNCSM sequence and an about 8.1-kb DNA fragment comprising the pCRB-BNGECSM sequence were detected.
To 10 μL of the about 8.1-kb DNA fragment comprising the pCRB-BNCSM or 10 μL of the about 8.1-kb DNA fragment comprising the pCRB-BNGECSM, each of which was amplified by the above PCR, 1 μL of T4 DNA ligase 10× buffer solution and 1 unit of T4 DNA ligase (made by Takara SHUZO) were added. Sterile distilled water was added thereto so that the total volume was 10 μL, and the mixture was allowed to react at 15° C. for 3 hours for ligation. The resulting liquid was named Ligation Liquid L or M.
With the separate use of the Ligation Liquids L and M, Escherichia coli HST02 was transformed by the calcium chloride method (Journal of Molecular Biology, 53, 159 (1970)) and was applied to LB agar medium (1% polypeptone, 0.5% yeast extract, 0.5% sodium chloride, and 1.5% agar) containing 50 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture, and the insertion of the mutation site was confirmed by the sequence analysis of the plasmid.
The plasmid comprising an ilvC gene which encodes acetohydroxy acid isomeroreductase derived from Corynebacterium glutamicum and which has mutations changing the serine at position 34 to glycine, the leucine at position 48 to glutamic acid, and the arginine at position 49 to phenylalanine was named pCRB-BNCTM or pCRB-BNGECTM (FIG. 1).
(6) Construction of Transgenic Strains for Valine-Producing Gene
With the use of the above-described plasmids pCRB-BNC and pCRB-DE, transformation of a Corynebacterium glutamicum R ldhA mutant [J. Mol. Biotechnol., Vol. 8, 243-254 (2004)] was performed by electroporation (Agric. Biol. Chem., Vol. 54, 443-447 (1990) and Res. Microbial., Vol. 144, 181-185 (1993)), and the strain was applied to A agar medium containing 50 μg/mL of kanamycin and 5 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzymes to confirm the inserted plasmids. As a result, transfection of the above-constructed plasmids pCRB-BNC and pCRB-DE was confirmed.
The obtained strain was named Corynebacterium glutamicum VAL1.
With the use of the above-described plasmids pCRB-BNCTM and pCRB-DE, transformation of a Corynebacterium glutamicum R ldhA mutant [J. Mol. Biotechnol., Vol. 8, 243-254 (2004)] was performed by electroporation (Agric. Biol. Chem., Vol. 54, 443-447 (1990) and Res. Microbiol., Vol. 144, 181-185 (1993)), and the strain was applied to A agar medium containing 50 μg/mL of kanamycin and 5 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzymes to confirm the inserted plasmids. As a result, transfection of the above-constructed plasmids pCRB-BNCTM and pCRB-DE was confirmed.
The obtained strain was named Corynebacterium glutamicum VAL2.
With the use of the above-described plasmids pCRB-BNCTM and pCRB-DLD, transformation of a Corynebacterium glutamicum R ldhA mutant [J. Mol. Biotechnol., Vol. 8, 243-254 (2004)] was performed by electroporation (Agric. Biol. Chem., Vol. 54, 443-447 (1990) and Res. Microbiol., Vol. 144, 181-185 (1993)), and the strain was applied to A agar medium containing 50 μg/mL of kanamycin and 5 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzymes to confirm the inserted plasmids. As a result, transfection of the above-constructed plasmids pCRB-BNCTM and pCRB-DLD was confirmed.
The obtained strain was named Corynebacterium glutamicum VAL3.
With the use of the above-described plasmids pCRB-BNGECTM and pCRB-DLD, transformation of a Corynebacterium glutamicum R ldhA mutant [J. Mol. Biotechnol., Vol. 8, 243-254 (2004)] was performed by electroporation (Agric. Biol. Chem., Vol. 54, 443-447 (1990) and Res. Microbiol., Vol. 144, 181-185 (1993)), and the strain was applied to A agar medium containing 50 μg/mL of kanamycin and 5 μg/mL of chloramphenicol.
A growing strain on the culture medium was subjected to liquid culture in the usual manner. Plasmid DNA was extracted from the culture and cut with the use of restriction enzymes to confirm the inserted plasmids. As a result, transfection of the above-constructed plasmids pCRB-BNGECTM and pCRB-DLD was confirmed.
The obtained strain was named Corynebacterium glutamicum VAL4.
The outline of gene recombination in the above-obtained strains is shown in Table 2.
Corynebacterium glutamicum VAL4 was deposited in Incorporated Administrative Agency National Institute of Technology and Evaluation, NITE Patent Microorganisms Depositary (2-5-8 Kazusakamatari, Kisarazu-shi, Chiba 292-0818 Japan) under Accession Number NITE BP-1122 on Aug. 11, 2011.







TABLE 2







Valine-producing gene transgenic strains











Transfected gene


Strain
Host strain
(gene name/origin)














VAL1
Corynebacterium
ilvBNC/CG
ilvD/CG
ilvE/CG


VAL2
glutamicum R
ilvBNC TM/CG
ilvD/CG
ilvE/CG


VAL3
ΔldhA
ilvBNC TM/CG
ilvD/CG
Leudh/LS


VAL4

ilvBNGEC TM/CG
ilvD/CG
Leudh/LS





*) Abbreviations in the table stand for the following.


<Abbreviation for gene origin>


CG; Corynebacterium glutamicum


LS; Lysinibacillus sphaericus


ΔldhA; lactase dehydrogenase gene disruptant


ilvBNC; wild-type acetohydroxy acid synthase gene and wild-type acetohydroxy acid isomeroreductase gene


ilvBNC TM; wild-type acetohydroxy acid synthase gene and mutated acetohydroxy acid isomeroreductase gene (S34G, L48E, R49F)


ilvBNGEC TM; mutated acetohydroxy acid synthase gene (G156E) and mutated acetohydroxy acid isomeroreductase gene (S34G, L48E, R49F)


ilvD; wild-type dihydroxy acid dehydratase gene


ilvE; wild-type transaminase gene


leudh; wild-type leucine dehydrogenase gene






Example 3
Experiment of Valine Production Using Corynebacterium glutamicum Valine-Producing Gene Transgenic Strains
For comparison of valine production among various combinations of introduced genes, namely, the Corynebacterium glutamicum ilvBN gene or the highly valine-producing mutated Corynebacterium glutamicum gene ilvBNGE, each of which encodes acetohydroxy acid synthase; the Corynebacterium glutamicum ilvC gene or the highly valine-producing mutated Corynebacterium glutamicum gene ilvCTM, each of which encodes acetohydroxy acid isomeroreductase; the Corynebacterium glutamicum ilvD gene which encodes dihydroxy acid dehydratase; and the Corynebacterium glutamicum ilvE gene which encodes transaminase, or the Lysinibacillus sphaericus leudh gene which encodes leucine dehydrogenase, various combinations of the genes were introduced into a Corynebacterium glutamicum R ldhA mutant as shown in Example 2.
Each of the valine-producing strains shown in Example 2 (Table 2) was applied to A agar medium (2 g of (NH2)2CO3 7 g of (NH4)2SO4, 0.5 g of KH2PO4, 0.5 g of K2HPO4, 0.5 g of MgSO4.7H2O, 1 mL of 0.06% (w/v) Fe2SO4.7H2O+0.042% (w/v) MnSO4.2H2O, 1 mL of 0.02% (w/v) biotin solution, 2 mL of 0.01% (w/v) thiamin solution, 2 g of yeast extract, 7 g of vitamin assay casamino acid, 40 g of glucose, and 15 g of agar were suspended in 1 L of distilled water) containing 50 μg/mL of kanamycin and 5 μg/mL of chloramphenicol, and left stand in the dark at 28° C. for 20 hours.
An inoculation loop of each of the Corynebacterium glutamicum valine-producing gene transgenic strains grown on a plate as above was inoculated into a test tube containing 10 mL of A liquid medium (2 g of (NH2)2CO3 7 g of (NH4)2SO4, 0.5 g of KH2PO4, 0.5 g of K2HPO4, 0.5 g of MgSO4.7H2O, 1 mL of 0.06% (w/v) Fe2SO4.7H2O+0.042% (w/v) MnSO4.2H2O, 1 mL of 0.02% (w/v) biotin solution, 2 mL of 0.01% (w/v) thiamin solution, 2 g of yeast extract, 7 g of vitamin assay casamino acid, and 40 g of glucose were dissolved in 1 L of distilled water) containing the antibiotics, and aerobically cultured with shaking at 28° C. for 15 hours.
<Aerobic Culture>
The Corynebacterium glutamicum valine-producing strain grown in the above conditions was inoculated in a 2-L conical flask containing 500 mL of A liquid medium containing 50 μg/mL of kanamycin, 5 μg/mL of chloramphenicol, and 25 μg/mL of zeocin, and aerobically cultured with shaking at 28° C. for 15 hours.
<Valine Production Under Reducing Conditions>
The bacterial cells of the strain cultured and proliferated as above were collected by centrifugation (5,000×g at 4° C. for 15 minutes). The obtained bacterial cells were suspended in BT (-urea) liquid medium (0.7% ammonium sulfate, 0.05% potassium dihydrogen phosphate, 0.05% dipotassium hydrogen phosphate, 0.05% magnesium sulfate heptahydrate, 0.0006% iron sulfate heptahydrate, 0.00042% manganese sulfate hydrate, 0.00002% biotin and 0.00002% thiamine hydrochloride) so that the concentration of the bacterial cell was 40 g (cell dry weight)/L. To a 100-mL medium bottle, 60 mL of the cell suspension was transferred, glucose was added so as to be 8% in concentration, and the reaction was allowed to proceed under reducing conditions (the ORP of the reaction mixture: −450 mV) in a water bath at 33° C. with stirring. During the reaction, the pH of the reaction mixture was kept at or above 7.0 through addition of 2.5 N aqueous ammonia controlled by a pH controller (Type: DT-1023 made by Able).
After 24 hours, the reaction mixture was sampled and then centrifuged (15,000×g at 4° C. for 10 minutes), and the obtained supernatant was used for quantitative determination of valine.
The results are shown in Table 3.
The Corynebacterium glutamicum ΔldhA strain not having any valine-producing gene expression plasmids introduced thereinto produced 5.37 mM of valine, and the VAL1 strain produced 53.9 mM of valine. That is, high expression of the ilVBNCDE genes increased the amount of produced valine about 10-fold.
Compared to the VAL1 strain, the VAL2 strain produced 239 mM of valine. That is, high expression of the mutated gene ilVCTM introduced instead of the wild-type gene ilvC further increased the amount of produced valine about 4.4-fold.
Compared to the VAL2 strain, the VAL3 strain produced 1170 mM of valine. That is, high expression of the leudh gene introduced instead of the ilvE gene further increased the amount of produced valine about 4.9-fold.
Compared to the VAL3 strain, the VAL4 strain produced 1470 mM of valine. That is, high expression of the mutated gene ilVBNGE introduced instead of the wild-type gene ilvBN further increased the amount of produced valine about 1.3-fold.







TABLE 3







Experiment of valine production using valine-producing gene


transgenic strains











Amount of




valine



Transfected gene
production


Strain
(gene name/origin)
(mM)














ΔldhA



5.4


VAL1
ilvBNC/CG
ilvD/CG
ilvE/CG
53.9


VAL2
ilvBNC TM/CG
ilvD/CG
ilvE/CG
239


VAL3
ilvBNC TM/CG
ilvD/CG
Leudh/LS
1170


VAL4
ilvBNGEC TM/CG
ilvD/CG
Leudh/LS
1470





*) Abbreviations in the table are the same as those in Table 2.






INDUSTRIAL APPLICABILITY
According to the process of the present invention, valine can be produced with a practical efficiency using microorganisms.

## Claims

1. A transformant obtainable by introducing one or more of the following DNAs (a), (b), and (c) into a coryneform bacterium as a host:
(a) A DNA consisting of the base sequence of SEQ ID NO: 37
(b) A DNA consisting of the base sequence of SEQ ID NO: 57
(c) A DNA consisting of the base sequence of SEQ ID NO: 40 has 90% or more of identity with the base sequence of SEQ ID NO: 40 and which encodes a polypeptide having leucine dehydrogenase activity.

2. The transformant according to claim 1, wherein a DNA consisting of the base sequence of SEQ ID NO: 43 or a DNA which has 90% or more of identity with the base sequence of SEQ ID NO: 43 and which encodes a polypeptide having dihydroxy acid dehydratase activity is also introduced thereinto.

3. The transformant according to claim 1, wherein the lactate dehydrogenase gene of the coryneform bacterium as the host is disrupted or deleted.

4. Corynebacterium glutamicum VAL4 (Accession Number: NITE BP-1122), which is a transformant of Corynebacterium glutamicum.

5. A process for producing valine, which comprises contacting the transformant of claim 1 with a culture media containing a sugar under reducing conditions, and a step of recovering valine from the reaction mixture.

6. The process according to claim 5, wherein the transformant does not grow in the reaction step.