# Patent

## Title
Targeting and in vivo imaging of tumor-associated macrophages

## Abstract

The invention relates to activities and characteristics of tumor-associated macrophages (TAMs). In particular, immunoglobulin single variable domains are provided against markers of TAMs, and methods using the same for in vivo imaging of tumor cells, as well as cancer diagnostics and therapeutics.

## Background
CROSS-REFERENCE TO RELATED APPLICATION
This application is a continuation-in-part of U.S. patent application Ser. No. 13/065,794 filed Mar. 29, 2011, which claims the benefit of U.S. Provisional Patent Application Ser. No. 61/341,356, filed Mar. 29, 2010, the disclosure of each of which is hereby incorporated herein in its entirety by this reference.


STATEMENT ACCORDING TO 37 C.F.R. §1.821(c) OR (e)—SEQUENCE LISTING SUBMITTED AS ASCII TEXT FILE
Pursuant to 37 C.F.R. §1.821(c) or (e), a file containing an ASCII text version of the Sequence Listing has been submitted concomitant with this application, the contents of which are hereby incorporated by reference.
FIELD OF THE INVENTION
The present invention relates to the field of tumor growth and biology. The invention relates to activities and characteristics of tumor-associated macrophages (TAMs). In particular, immunoglobulin single variable domains are provided against markers of TAMs, and methods using the same for in vivo imaging of tumor cells, as well as cancer diagnostics and therapeutics.
BACKGROUND
Tumors harbor dynamic microenvironments in which cancer cells are intimately associated with non-transformed host cells. The tumor-associated stroma is considered to play an important role during tumor growth, influencing phenomena such as angiogenesis, metastasis and immune suppression.(36) As such, the stroma forms an attractive target for diagnostic and therapeutic applications.(37) 
Different myeloid cells are important components of the tumor stroma. Myeloid cells are frequently found to infiltrate tumors and have been linked to diverse tumor-promoting activities.(1) In particular, tumor-associated macrophages (TAMs) are an important component of the tumor stroma, both in murine models and human patients.(2) TAMs can promote tumor-growth by affecting angiogenesis, immune suppression and invasion and metastasis.(2,3) 
Tissue-resident macrophages can be maintained through local proliferation or differentiation in situ from circulating monocytic precursors.(5) Importantly, discrete subsets of blood monocytes have been described. Mouse monocytes can be classified as Ly6ClowCX3CR1hi(CCR2−CD62L−) or Ly6ChiCX3CR1low (CCR2+CD62L+) and are shown to have distinct functions and migration patterns. (6)
Macrophages are plastic cells that can adopt different phenotypes depending on the immune context. Microenvironmental stimuli can drive a macrophage either towards a “classical” (M1) or an “alternative” (M2) activation state, two extremes in a spectrum.(7) M1 macrophages are typically characterized by the expression of pro-inflammatory cytokines, inducible nitric oxide synthase 2 (Nos2) and MHC Class II molecules. M2 macrophages, have a decreased level of the aforementioned molecules and are identified by their signature-expression of a variety of markers, including arginase-1 and mannose and scavenger receptors. It has been suggested that TAMs display a M2-like phenotype.(8) 
Despite the presence of TAM in tumor infiltrate and their potential to produce angiogenic factors, their role in tumor growth and development remains unclear. There remains a need to discover and understand the complexities of the tumor-infiltrating myeloid cell compartment in view of the selective treatment of tumor growth.
SUMMARY OF THE INVENTION
Antibody-based tumor targeting strategies are widely explored.(38) Antibodies can be used for tumor imaging or delivering therapeuticals to tumor cells. However, limitations of conventional antibodies include a poor penetration of solid tumors and high Fc-mediated aspecific binding, highlighting the need for smaller and more specific binding units. Further to that, antibody-based tumor-targeting approaches have mostly been directed against antigens expressed on cancer cells.(38) However, the antigenic profile of cancer cells can be unstable and depends on the cancer type. Tumors also contain a large stromal compartment, which includes myeloid cells such as macrophages.(39) Stromal cells might provide a good alternative for tumor-targeting, since their antigenic profile is more stable and might be similar across different cancer types.
The present invention is based on the inventor's surprising finding of the existence of molecularly and functionally distinct TAM subsets, located in different intratumoral regions and the unraveling of Ly6Chi monocytes as their precursors. In particular, molecular markers for discriminating between these different TAM subsets, and accordingly, between these different intratumoral microenvironments (hypoxic versus normoxic zones), form the basis of the present invention. The present invention relates to the use of these molecular markers for specifically targeting the M1/M2-like or hypoxic/perivascular TAM subsets or their precursors, or, in a preferred embodiment, for selectively targeting the hypoxic/perivascular cells inside a tumor. The invention further relates to combinatorial strategies for optimally “re-educating” the TAM compartment and reverting its tumor-promoting activities.
In particular, selective in vivo targeting and imaging of distinct TAM subpopulations in the tumor stroma is envisaged by making use of specific immunoglobulin single variable domains, including nanobodies, against the corresponding molecular markers. Furthermore, a strategy was developed to reduce extra-tumoral signals to background levels, while persevering an efficient targeting of the tumor. Evidence is provided that TAM subsets can be efficiently targeted in vivo using nanobodies against the macrophage mannose receptor (MMR) in preclinical models, as illustrated in murine models. Moreover, evidence is provided that MMR+ TAMs can be detected in intratumoral hypoxic zones of human samples, as illustrated in human breast cancer samples.
Thus, the invention encompasses novel diagnostic, prognostic and therapeutic applications for the diagnosis and treatment of cancer based on the existence of distinct TAM subsets, corresponding molecular markers and targeting tools, and a selective tumor targeting methodology.
Objects of the present invention will be clear from the description that follows.



BRIEF DESCRIPTION OF THE DRAWINGS
The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
FIG. 1: TS/A tumors are infiltrated by distinct granulocyte and monocyte/macrophage subsets. (A) Single-cell suspensions of 11-day-old tumors were stained for the indicated markers. On gated CD11b+ cells, Ly6C was plotted vs. MHC II, demonstrating at least seven distinct subsets. For each subset, forward scatter (FSC) vs. side scatter (SSC) plots are shown. (B) Staining single-cell suspensions from 7-, 11-, 14- and 21-day-old tumors. Plots are gated on CD11b+ cells. Accompanying mean tumor diameters±SEM are indicated. n=3 experiments. (C) The expression of the indicated markers was assessed on cells present in gates 1-4, as shown in panel A. All markers were analyzed using antibody staining, except for CX3CR1, for which tumors were grown in CX3CR1GFP/+ mice. Shaded histograms are isotype controls or, for CX3CR1, autofluorescence in WT mice.
FIG. 2: Infiltration of latex-labeled monocytes in tumors and kinetics of BrdU incorporation in the distinct TAM subsets. (A) Six-day-old tumors were collected from control mice or mice in which the Ly6Clow or Ly6Chi monocytes were labeled. Plots are gated on CD11b+ cells. n=3 experiments. (B1) 6-, 12- or 19-day-old tumors were collected from untreated mice (control) or mice in which the Ly6Chi monocytes were labeled (latex injected). Plots are gated on CD11b+ cells. (B2) Ly6C vs. MHC II plots of tumor single-cell suspensions from latex injected mice at 6, 12 or 19 days p.i, either gated on the total CD11b+ population or on the latex+CD11b+ population. n=3 experiments. (C) Two weeks tumor-bearing mice were left untreated (0 hours) or continuously given BrdU for the indicated time, after which BrdU incorporation in tumor cells was measured. C1 shows how BrdU+ cells were gated in the different TAM subsets. n=2 BrdU-kinetic experiments (D) The intracellular expression of Ki67 was assessed via flow cytometry. Shaded histograms are isotype controls. n>3.
FIG. 3: Arginase, TNFα, and iNOS protein expression in MHC IIhi and MHC IIlow TAMs. (A) Arginase enzymatic activity (mU) was measured in lysates of sorted TAMs. Values are the mean±SEM of three experiments. * p<0.05 (B) TNFα production by TAMs was measured using intracellular FACS. Bar diagrams represent the mean percentage TNFa+TAMs±SEM from three experiments. * p<0.05 (C) TAMs were left untreated or stimulated with IFNγ, LPS or LPS+IFNγ for 12 hours. Subsequently, iNOS expression was evaluated using intracellular FACS. The percentage iNOS+ cells is shown as normalized ΔMFI (see Materials & Methods). n=2 experiments.
FIG. 4: MHC IIlow TAMs are enriched in hypoxic regions, while MHC IIhi TAMs are mainly normoxic. (A) Three weeks tumor-bearing mice were injected with pimonidazole (HP-1). Frozen tumor sections were stained with MECA32 and anti-HP-1 antibodies and DAPI. (B) Frozen tumor sections from HP-1 injected mice were stained for CD11b, MHC II, HP-1 adducts and DAPI. (C) Assessment of HP-1 adducts in the distinct tumor myeloid subsets using FACS. n=4 experiments.
FIG. 5: Differential functions of TAM subsets. (A) Sorted TAMs were grafted on the developing chorioallantoic membrane from fertilized chicken eggs. BSA and rhVEGF grafting were used as negative and positive controls, respectively. At day 13, the number of vessels growing towards the implants was quantified. Values are the mean number of implant-directed vessels±SEM of eight individual eggs/condition of two experiments. * p<0.05; ** p<0.01. (B) Sorted TAM subsets or splenic Balb/c cDCs were cultured in the presence of purified C57BL/6 CD4+ or CD8+ T cells and T-cell proliferation was assessed. Graphs represent the average level of 3H-thymidine incorporation, expressed as Counts Per Minute (CPM), ±SEM. n=3 experiments. (C) Sorted TAM subsets or splenic Balb/c cDC were added to naive Balb/c splenocytes. Co-cultures were stimulated with anti-CD3 and proliferation was assessed. n=3 experiments. (D) TAM subsets and Balb/c splenocytes were cultured at a 1:4 ratio and treated with anti-CD3 with or without the indicated inhibitors. Values represent the mean±SD of the relative percentage suppression taken over three experiments. * p<0.05
FIG. 6: Identifying Ly6Chi and Ly6Clow monocytes in tumors. Eleven-day-old tumors were collected from CX3CR1GFP/+ reporter mice. Within the gated CD11b+population, Ly6ChiMHC II− and Ly6ClowMHC II− cells were subgated and their respective CX3CR1 vs. CCR3 plots are shown. Ly6ChiMHC II− cells were CCR3−CX3CR1low (Gate 1). Ly6ClowMHC II− cells could be subdivided in CCR3−CX3CR1low (Gate 2), CCR3−CX3CR1hi (Gate 3) and CCR3+CX3CR1− cells (Gate E, comprising of eosinophils). Forward vs. Side Scatter plots for the distinct gates are shown in the bottom panel. Similar results were seen at different time points of tumor growth. For the indicated time point, results are representative of three independent experiments.
FIG. 7: Purities of sorted cell populations. Representative plots are shown of the FACS sorted cell populations that were used throughout the study. (A) MHC IIhi TAMs and MHC IIlow TAMs (B) CD11c+MHC IIhiB220-Ly6C-splenic cDCs.
FIG. 8: Latex bead uptake by TAM subsets in vivo and in vitro. (A) Three weeks tumor-bearing mice were injected iv with fluorescent latex beads and 2 hours later, tumors were collected to assess latex uptake by the CD11b+ population. The depicted SSC vs. latex plot is on gated CD11b+ cells and shows how latex+ cells are gated. The percentage of Ly6Chi monocytes, Ly6Cint TAMs, MHC IIhi TAMs and MHC IIlow TAMs within the total CD11b+ gate or CD11b+Latex+ gate is depicted for five individual groups of tumors from three independent experiments. (B) Tumor single cell suspensions were cultured in vitro, at 4° C. or 37° C., in the absence (control) or presence of latex beads for 40 minutes. Latex+ cells within the CD11b+ population were gated and their percentages are given. The percentage of the distinct monocyte/TAM subsets within the total CD11b+ gate or CD11b+Latex+ gate is depicted for five individual groups of tumors from three independent experiments for cells cultured at 37° C.
FIG. 9: DQ-OVA processing by TAM subsets. TAMs were allowed to phagocytose and process DQ-OVA for 15 minutes at 0° C. or 37° C. Free DQ-OVA was subsequently removed from the culture medium and TAMs were given an additional 15, 30 and 60 minutes to process internalized DQ-OVA. DQ-OVA processing results in the formation of fluorescent peptides and fluorescence intensities for the gated TAM subsets are shown in histogram plots. Values are the mean percentage cells within the indicated gate±SEM from three independent experiments. p-values were calculated for these means between MHC IIhi vs. MHC IIlow TAMs for each time point. * p<0.05
FIG. 10: Schematic summary.
FIG. 11: Biodistribution MMR Nb in naïve and knockout mice.
FIG. 12: Uptake experiments of MMR Nb in TS/A tumor-bearing mice.
FIG. 13: TAM subsets in the Lewis Lung Carcinoma (LLC) model and in the mammary carcinoma model 4T1.
FIG. 14. MMR expression on distinct cell types present in TS/A tumor suspensions. Single cell suspensions were made from TS/A tumors and MMR expression was evaluated on the indicated cell populations using an anti-MMR monoclonal antibody. Shaded histograms represent isotype control.
FIG. 15. Anti-MMR clone 1 differentially labels TAM subsets in TS/A tumor sections. TS/A tumors were collected from three weeks tumor-bearing mice and frozen sections were triple-stained for MMR (red), MHC II (green) and CD11b (blue).
FIG. 16. anti-MMR Nb differentially binds to TAM subsets in tumor single cell suspensions. (A) Single-cell suspensions of 21-day old TS/A tumors were stained with the indicated markers. anti-BCII10 Nb served as negative control. (B) Staining of anti-MMR Nb clone 1 was examined on the gated myeloid subsets. Shaded histograms represents staining with anti-BCII10 Nb.
FIG. 17. Coronal and sagittal views of fused Pinhole SPECT and Micro-CT images of naive WT or MMR−/− mice 1 hour after injection with 99mTc labeled anti-MMR Nb clone 1. (A) In WT mice anti-MMR Nb shows kidney/bladder elimination and uptake in several organs. (B) In MMR−/− mice anti-MMR Nb shows primarily kidney/bladder elimination.
FIG. 18. Coronal and transverse views of fused Pinhole SPECT and Micro-CT images of WT TS/A tumor-bearing mice 3 hours after injection with 99mTc labeled cAbBCII10 or anti-MMR Nb.
FIG. 19. Coronal and transverse views of fused Pinhole SPECT and Micro-CT images of WT and MMR−/− 3LL tumor-bearing mice 3 hours after injection with 99mTc labeled cAbBCII10 or anti-MMR Nb.
FIG. 20. Uptake values of 99mTc-labeled monovalent anti-MMR Nb clone 1 in TS/A tumor-bearing mice upon co-injection with an eighty-fold excess of cold monovalent anti-MMR Nb, based on dissection at 3 hours post injection. Tracer uptake is expressed as injected activity per gram (% IA/g).
FIG. 21. Uptake values of 99mTc-labeled monovalent anti-MMR Nb clone 1 in TS/A tumor-bearing mice upon co-injection with a twenty-fold excess of cold bivalent anti-MMR Nb, based on dissection at 3 hours post injection. Tracer uptake is expressed as injected activity per gram (% IA/g).
FIG. 22. The relative abundance of TAM subsets is different in fast growing 3LL-R versus slow growing 3LL-S tumors. 3×106 cancer cells were injected in the flank and tumor volumes were measured at different time intervals. When tumors reached a volume of about 1000 mm3, tumor single cell suspensions were made and the presence of TAM subsets were assessed via FACS.
FIG. 23. MHC IIhi TAM are located outside of hypoxic regions in 3LL-R tumors. 3LL-R tumors were collected from 12-days tumor-bearing mice and frozen sections were double-stained for MHC II (green) and Hypoxyprobe (blue). Pictures are shown from three distinct regions within the same tumor.
FIG. 24. α-MMR Nb targeting in WT and CCR2-KO tumor-bearing mice. (A) Percentages of MHC IIlow TAMs and Ly6G+ neutrophils in tumor single-cell suspensions of WT and CCR2-KO tumors. Mean±SEM (n=4) (B) Uptake values of 99mTc-labeled α-MMR Nb c11 or Nb BCII10 in WT or CCR2-KO mice 12 days post 3LL-R injection. *** p<0.001 (C) AF647-labeled α-MMR Nb c11 and pimonidazole were injected i.v. in 3LL-R WT or MMR-KO tumor-bearers. Two hours later, tumors were collected and stained for F4/80 and hypoxyprobe. (D) Overlays of α-MMR Nb-AF647, hypoxyprobe and F4/80 signals in WT 3LL-R tumors.
FIG. 25. Increasing tumor-to-tissue ratios of 99mTc-α-MMR Nb tracer uptake by excess unlabeled bivalent α-MMR Nb c11. (A) Overview of different Nb constructs. (B) Mono and bivalent 99mTc-labeled Nbs were injected in s.c. TS/A or 3LL-R tumor-bearing mice and uptake values were calculated 3 hours post injection via organ dissection (C) s.c. TS/A tumor-bearing mice were injected with 99mTc-labeled Nb BCII10, 99mTc-labeled α-MMR Nb c11 or 99mTc-labeled α-MMR Nb+twenty-fold molar excess of unlabeled bivalent α-MMR Nb c11. C1: uptake values of 99mTc-α-MMR Nb (expressed as injected activity per gram (% IA/g)) at 3 hours post injection. Mean±SEM (n=6). C2: α-MMR Nb-to-background ratio, calculated as 99mTc-α-MMR Nb uptake values/99mTc-Nb BCII10. C3: tumor-to-tissue ratio of 99mTc-α-MMR Nb, calculated as “tracer uptake in the tumor”/“tracer uptake in the organ.” Statistical significance was tested between 99mTc-α-MMR Nb and 99mTc-α-MMR Nb+cold Nb *p<0.05, **p<0.01, ***p<0.001.
FIG. 26. Fused Pinhole SPECT/Micro-CT images of mice co-injected with 99mTclabeled α-MMR Nb with excess unlabeled bivalent α-MMR Nb. (A) Coronal views of subcutaneous TS/A-bearing mice 3 hours after injection of 99mTc-labeled α-MMR Nb c11, 99mTc-labeled α-MMR Nb c11+twenty-fold molar excess of unlabeled bivalent α-MMR Nb c11 or 99mTc-labeled Nb BCII10. (B) 3D reconstruction of SPECT/CT images of a subcutaneous TS/A-bearing mouse injected with indicated tracer, 3 hours p.i. (planar view; Video 1 for 3D view: data not shown) (C) Coronal and sagittal views of mice bearing orthotopic TS/A tumors in the mammary gland 3 hours after injection with indicated tracers. (D) High-resolution 3D reconstruction of CT and SPECT/CT images of an orthotopic TS/A-bearing mouse injected with indicated tracer, 3 hours p.i. (planar view; Video 2 for 3D view: data not shown).
FIG. 27. α-MMR Nb-based imaging and TAM targeting in MMTV-PyMT mice. (A) A MMTV-PyMT mouse with multiple macroscopic nodules was consecutively (48- to 76-hour intervals) injected with indicated tracers; images were taken 3 hours p.i. Coronal views are shown. n=3 (B) High-resolution 3D reconstruction of CT and SPECT/CT images of the same mouse after injection of 99mTc-labeled α-MMR Nb and blocking bivalent α-MMR Nb. Out of multiple nodules, the numbers indicate those tumors that were chosen for dissection (C) FACS analysis of single-cell suspensions from the tumors indicated in (B).
FIG. 28. Effect of mono- and bivalent α-MMR Nb on immune cell activation in vivo. To assess whether Nbs elicit a functional response in vivo, naive mice and 13 days 3LL-R tumor-bearing mice were left untreated or were stimulated (i.v. injection) with 5 μg monovalent Nb+200 μg bivalent Nb for 6 or 24 hours. Cytokine and chemokine production was assessed by sandwich ELISA on blood serum. Values are the mean±SEM of three experiments.
FIG. 29. PE-ELISA on human MMR. Summary of the selected anti-human MMR Nb clones. A clone was selected when the OD405 nm was at least three times higher on specific antigen as compared to irrelevant milk-blocking proteins.
FIG. 30. PE-ELISA on human MMR. Summary of the selected anti-human/mouse MMR cross-reactive Nb clones. A clone was selected when the OD405 nm was at least three times higher on specific antigen as compared to irrelevant milk-blocking proteins.
FIG. 31. PE-ELISA on mouse MMR Summary of the selected anti-human/mouse MMR cross-reactive Nb clones. A clone was selected when the OD405 nm was at least two times higher on specific antigen as compared to irrelevant milk-blocking proteins.



DETAILED DESCRIPTION OF THE INVENTION
The present invention will be described with respect to particular embodiments and with reference to certain drawings but the invention is not limited thereto but only by the claims. Any reference signs in the claims shall not be construed as limiting the scope. The drawings described are only schematic and are non-limiting. In the drawings, the size of some of the elements may be exaggerated and not drawn on scale for illustrative purposes. Where the term “comprising” is used in the present description and claims, it does not exclude other elements or steps. Where an indefinite or definite article is used when referring to a singular noun e.g., “a” or “an,” “the,” this includes a plural of that noun unless something else is specifically stated. Furthermore, the terms first, second, third and the like in the description and in the claims, are used for distinguishing between similar elements and not necessarily for describing a sequential or chronological order. It is to be understood that the terms so used are interchangeable under appropriate circumstances and that the embodiments of the invention described herein are capable of operation in other sequences than described or illustrated herein.
Unless otherwise defined herein, scientific and technical terms and phrases used in connection with the present invention shall have the meanings that are commonly understood by those of ordinary skill in the art. Generally, nomenclatures used in connection with, and techniques of molecular and cellular biology, genetics and protein and nucleic acid chemistry and hybridization described herein are those well known and commonly used in the art. The methods and techniques of the present invention are generally performed according to conventional methods well known in the art and as described in various general and more specific references that are cited and discussed throughout the present specification unless otherwise indicated. See, for example, Sambrook et al. Molecular Cloning: A Laboratory Manual, 2d ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989); Ausubel et al., Current Protocols in Molecular Biology, Greene Publishing Associates (1992, and Supplements to 2002).
As used herein, the terms “polypeptide,” “protein,” “peptide” are used interchangeably herein, and refer to a polymeric form of amino acids of any length, which can include coded and non-coded amino acids, chemically or biochemically modified or derivatized amino acids, and polypeptides having modified peptide backbones.
As used herein, the terms “nucleic acid molecule,” “polynucleotide,” “polynucleic acid,” “nucleic acid” are used interchangeably and refer to a polymeric form of nucleotides of any length, either deoxyribonucleotides or ribonucleotides, or analogs thereof. Polynucleotides may have any three-dimensional structure, and may perform any function, known or unknown. Non-limiting examples of polynucleotides include a gene, a gene fragment, exons, introns, messenger RNA (mRNA), transfer RNA, ribosomal RNA, ribozymes, cDNA, recombinant polynucleotides, branched polynucleotides, plasmids, vectors, isolated DNA of any sequence, control regions, isolated RNA of any sequence, nucleic acid probes, and primers. The nucleic acid molecule may be linear or circular.
A first aspect of the invention relates to an immunoglobulin single variable domain directed against and/or specifically binding to a molecular marker of Table 1.
According to a particular embodiment, the invention relates to an immunoglobulin single variable domain that is directed against and/or specifically binds to the macrophage mannose receptor. The immunoglobulin single variable domains of the present invention may generally be directed against any MMR, in particular a mammalian macrophage mannose receptor, and in particular mouse macrophage mannose receptor (SEQ ID NO:260) and/or human macrophage mannose receptor (SEQ ID NO:258). The present invention is in its broadest sense not particularly limited to or defined by a specific antigenic determinant, epitope, part, domain, subunit or conformation of MMR, and in particular mouse MMR (SEQ ID NO:260) and/or human macrophage mannose receptor (SEQ ID NO:258) against which the immunoglobulin single variable domains are directed. According to a specific preferred embodiment, the immunoglobulin single variable domain specifically binds to the ectodomain of the macrophage mannose receptor, and in particular the ectodomain of the mouse macrophage mannose receptor (SEQ ID NO:263) and/or the ectodomain of the human macrophage mannose receptor (SEQ ID NO:262).
The “macrophage mannose receptor” (MMR), as used herein, refers to a type I transmembrane protein, first identified in mammalian tissue macrophages and later in dendritic cells and a variety of endothelial and epithelial cells. Macrophages are central actors of the innate and adaptive immune responses. They are disseminated throughout most organs to protect against entry of infectious agents by internalizing and most of the time, killing them. Among the surface receptors present on macrophages, the mannose receptor recognizes a variety of molecular patterns generic to microorganisms. The MMR is composed of a single subunit with N- and O-linked glycosylations and consists of five domains: an N-terminal cysteine-rich region, which recognizes terminal sulfated sugar residues; a fibronectin type II domain with unclear function; a series of eight C-type, lectin-like carbohydrate recognition domains (CRDs) involved in Ca2+-dependent recognition of mannose, fucose, or N-acetylglucosamine residues on the envelop of pathogens or on endogenous glycoproteins with CRDs 4-8 showing affinity for ligands comparable with that of intact MR; a single transmembrane domain; and a 45 residue-long cytoplasmic tail that contains motifs critical for MR-mediated endocytosis and sorting in endosomes.(47) 
Preferably, the macrophage mannose receptor is of mammalian origin, particularly from mouse, rat, human, and the like, and these cross-species variants of the MMR protein are referred to herein as “homologues” of the macrophage mannose receptor. Thus, the macrophage mannose receptor as referred to in the present invention includes homologues as wells as fragments of the full-length MMR protein. Non-limiting examples of homologues of the MMR include the mouse MMR (synonyms: MRC1 or CD206; accession number nucleotide sequence: NM—008625.2; accession number protein sequence: NP—032651.2 and as in SEQ ID NO:260) or the human MMR (synonyms: MRC1 or CD206; accession number nucleotide sequence: NM—002438.2; accession number protein sequence: NP—002429.1 and as in SEQ ID NO:258). The deduced amino acid sequence of mouse mannose receptor has an overall 82% homology with the human mannose receptor, as can be easily measured in a BLASTp alignment.(51) A non-limiting example of a fragment of the full-length MMR protein includes the ectodomain of a particular MMR. The “ectodomain” as used herein, refers to a fragment of the MMR containing an N-terminus that is cysteine-rich, followed by a fibronectin type II domain and eight carbohydrate recognition domains (CRDs). All of the eight CRDs are particularly well conserved, especially CRD4. For example, mouse CRD4 shows 92% homology with the equivalent region of the human protein. The ectodomain of the mouse macrophage mannose receptor is defined as the AA 19-AA 1388 fragment (SEQ ID NO:263) of the corresponding full-length mouse MMR amino acid sequence as defined in NP—032651.2 (SEQ ID NO:260). Or, the ectodomain of the human macrophage mannose receptor is be defined as the AA 19-AA 1383 fragment (SEQ ID NO:262) of the corresponding full-length mouse MMR amino acid sequence as defined in NP—002429.1 (SEQ ID NO:258), see also Table 15.
The present invention thus provides for an immunoglobulin single variable domain specifically recognizing a marker of Table 1, preferably the macrophage mannose receptor (as defined above). As used herein, the term “specifically recognizing” or “specifically binding to” or simply “specific for” refers to the ability of an immunoglobulin or an immunoglobulin fragment, such as an immunoglobulin single variable domain, to preferentially bind to a particular antigen that is present in a homogeneous mixture of different antigens and does not necessarily imply high affinity (as defined further herein). In certain embodiments, a specific binding interaction will discriminate between desirable and undesirable antigens in a sample, in some embodiments more than about 10- to 100-fold or more (e.g., more than about 1000- or 10,000-fold). The terms “specifically bind,” “selectively bind,” “preferentially bind,” and grammatical equivalents thereof, are used interchangeably herein.
The term “affinity,” as used herein, refers to the degree to which an immunoglobulin single variable domain, binds to an antigen so as to shift the equilibrium of antigen and immunoglobulin single variable domain toward the presence of a complex formed by their binding. Thus, for example, where an antigen and antibody (fragment) are combined in relatively equal concentration, an antibody (fragment) of high affinity will bind to the available antigen so as to shift the equilibrium toward high concentration of the resulting complex. The dissociation constant is commonly used to describe the affinity between the antibody (fragment) and the antigenic target. Typically, the dissociation constant is lower than 10−5 M. Preferably, the dissociation constant is lower than 10−6 M, more preferably, lower than 10−7 M. Most preferably, the dissociation constant is lower than 10−8 M.
An immunoglobulin single variable domain that can specifically bind to and/or that has affinity for a specific antigen or antigenic determinant (e.g., epitope) is said to be “against” or “directed against” the antigen or antigenic determinant. An immunoglobulin single variable domain according to the invention is said to be “cross-reactive” for two different antigens or antigenic determinants (such as macrophage mannose receptor from two different species of mammal, such as human MMR and mouse MMR) if it is specific for both these different antigens or antigenic determinants.
It will be appreciated that, according to the invention, immunoglobulin single variable domains that are directed against the macrophage mannose receptor from one species may or may not show cross-reactivity with the macrophage mannose receptor from another species. For example, immunoglobulin single variable domains directed against human MMR, in particular human MMR (SEQ ID NO:258) may or may not show cross-reactivity with MMR from one or more other species of animals that are often used in animal models for diseases (for example, mouse, rat, rabbit, pig or dog). It will be clear to the skilled person that such cross-reactivity, when present, may have advantages for diagnostic and/or therapeutic development, since it allows the immunoglobulin single variable domains to be tested in such disease models. It is expected that the immunoglobulin single variable domains according to the invention will generally bind to all naturally occurring or synthetic analogs, variants, mutants, alleles of the MMRs mentioned herein.
As used herein, an “immunoglobulin single variable domain” is an antigen-binding domain or fragment that comprises an amino acid sequence that comprises four framework regions (FR) and three complementarity determining regions (CDR) according to the following formula (1):

FR1-CDR1-FR2-CDR2-FR3-CDR3-FR4  (1);

or any suitable fragment thereof (which will then usually contain at least some of the amino acid residues that form at least one of the complementarity determining regions), and in which FR1 to FR4 refer to framework regions 1 to 4, respectively, and in which CDR1 to CDR3 refer to the complementarity determining regions 1 to 3, respectively.

Immunoglobulin single variable domains comprising 4 FRs and 3 CDRs are known to the person skilled in the art and have been described, as a non-limiting example, in reference (40). Typical, but non-limiting, examples of immunoglobulin single variable domains include light chain variable domain sequences (e.g., a VL domain sequence), or heavy chain variable domain sequences (e.g., a VH domain sequence), which are usually derived from conventional four-chain antibodies. Preferably, the immunoglobulin single variable domains are derived from camelid antibodies, preferably from heavy chain camelid antibodies, devoid of light chains, and are known as VHH domain sequences or nanobodies (as described further herein).
A nanobody (Nb) is the smallest functional fragment or single variable domain (VHH) of a naturally occurring single-chain antibody and is known to the person skilled in the art. They are derived from heavy chain only antibodies, seen in camelids.(26,27) In the family of “camelids” immunoglobulins devoid of light polypeptide chains are found. “Camelids” comprise old world camelids (Camelus bactrianus and Camelus dromedarius) and new world camelids (for example, Lama paccos, Lama glama, Lama guanicoe and Lama vicugna). The single variable domain heavy chain antibody is herein designated as a Nanobody or a VHH antibody. NanobodyTM, NanobodiesTM and NanocloneTM are trademarks of Ablynx NV (Belgium). The small size and unique biophysical properties of Nbs excel conventional antibody fragments for the recognition of uncommon or hidden epitopes and for binding into cavities or active sites of protein targets. Further, Nbs can be designed as multi-specific and multivalent antibodies (as defined further herein) or attached to reporter molecules.(28) Nbs are stable, survive the gastro-intestinal system and can easily be manufactured. Therefore, Nbs can be used in many applications including drug discovery and therapy, but also as a versatile and valuable tool for purification, functional study and crystallization of proteins.(29) 
The nanobodies of the invention generally comprise a single amino acid chain that can be considered to comprise four “framework regions” or FRs and three “complementarity determining regions” or CDRs, according to formula (1) (as define above). The term “complementarity determining region” or “CDR” refers to variable regions in nanobodies and contains the amino acid sequences capable of specifically binding to antigenic targets. These CDR regions account for the basic specificity of the nanobody for a particular antigenic determinant structure. Such regions are also referred to as “hypervariable regions.” The nanobodies have three CDR regions, each non-contiguous with the others (termed CDR1, CDR2, CDR3). The delineation of the FR and CDR sequences is often based on the IMGT unique numbering system for V-domains and V-like domains.(35) Alternatively, the delineation of the FR and CDR sequences can be done by using the Kabat numbering system as applied to VHH domains from Camelids in the article of Riechmann and Muyldermans.(41) As will be known by the person skilled in the art, the nanobodies can in particular be characterized by the presence of one or more Camelidae hallmark residues in one or more of the framework sequences (according to Kabat numbering), as described, for example, in WO 08/020,079, on page 75, Table A-3, incorporated herein by reference).
Non-limiting examples of nanobodies according to the present invention are as described herein and include anti-human, anti-mouse and cross-reactive anti-human/anti-mouse MMR nanobodies. For example, in Table 4, in particular SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:112, SEQ ID NO:114, SEQ ID NO:116; in Table 14, in particular SEQ ID NOS:126-155). In a specific embodiment, the nanobodies of the present invention may comprise at least one of the complementarity determining regions (CDRs) as described herein, for example, CDRs with an amino acid sequence selected from SEQ ID NOs:156-251 (see Table 14). Preferably, the nanobodies of the present invention comprise a CDR1, a CDR2 and a CDR3 selected from the group consisting of SEQ ID NOS:156-251 according to the above described formula (1). More specifically, the nanobodies can be selected from the group comprising SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:112, SEQ ID NO:114, SEQ ID NO:116, SEQ ID NOS:126-155, or a functional fragment thereof. A “functional fragment” or a “suitable fragment,” as used herein, may, for example, comprise one of the CDR loops. Preferably, the functional fragment comprises CDR3. More specifically, the nanobodies consist of any of SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:112, SEQ ID NO:114, SEQ ID NO:116, or SEQ ID NOS:126-155. In still another embodiment, a nucleic acid sequence encoding any of the above nanobodies or functional fragments is also part of the present invention (for example, see Table 4; SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:111, SEQ ID NO:113, SEQ ID NO:115). Further, the present invention also envisages expression vectors comprising nucleic acid sequences encoding any of the above nanobodies or functional fragments thereof, as well as host cells expressing such expression vectors. Suitable expression systems include constitutive and inducible expression systems in bacteria or yeasts, virus expression systems, such as baculovirus, semliki forest virus and lentiviruses, or transient transfection in insect or mammalian cells. Suitable host cells include E. coli, Lactococcus lactis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Pichia pastoris, and the like. Suitable animal host cells include HEK 293, COS, S2, CHO, NSO, DT40 and the like. The cloning, expression and/or purification of the nanobodies can be done according to techniques known by the skilled person in the art. For the sake of clarity, it is expected that at least some of the nanobodies identified herein may also be cross-reactive with macrophage mannose receptors of other mammalian species.
It should be noted that the term nanobody as used herein in its broadest sense is not limited to a specific biological source or to a specific method of preparation. For example, the nanobodies of the invention can generally be obtained: (1) by isolating the VHH domain of a naturally occurring heavy chain antibody; (2) by expression of a nucleotide sequence encoding a naturally occurring VHH domain; (3) by “humanization” of a naturally occurring VHH domain or by expression of a nucleic acid encoding a such humanized VHH domain; (4) by “camelization” of a naturally occurring VH domain from any animal species, and in particular from a mammalian species, such as from a human being, or by expression of a nucleic acid encoding such a camelized VH domain; (5) by “camelization” of a “domain antibody” or “Dab” as described in the art, or by expression of a nucleic acid encoding such a camelized VH domain; (6) by using synthetic or semi-synthetic techniques for preparing proteins, polypeptides or other amino acid sequences known per se; (7) by preparing a nucleic acid encoding a nanobody using techniques for nucleic acid synthesis known per se, followed by expression of the nucleic acid thus obtained; and/or (8) by any combination of one or more of the foregoing.
One preferred class of nanobodies corresponds to the VHH domains of naturally occurring heavy chain antibodies directed against a macrophage mannose receptor. As further described herein, such VHH sequences can generally be generated or obtained by suitably immunizing a species of Camelid with a MMR (i.e., so as to raise an immune response and/or heavy chain antibodies directed against a MMR), by obtaining a suitable biological sample from the Camelid (such as a blood sample, or any sample of B-cells), and by generating VHH sequences directed against a MMR, starting from the sample, using any suitable technique known per se. Such techniques will be clear to the skilled person. Alternatively, such naturally occurring VHH domains against MMR can be obtained from naive libraries of Camelid VHH sequences, for example, by screening such a library using MMR or at least one part, fragment, antigenic determinant or epitope thereof using one or more screening techniques known per se. Such libraries and techniques are, for example, described in WO9937681, WO0190190, WO03025020 and WO03035694. Alternatively, improved synthetic or semi-synthetic libraries derived from naive VHH libraries may be used, such as VHH libraries obtained from naive VHH libraries by techniques such as random mutagenesis and/or CDR shuffling, as, for example, described in WO0043507. Yet another technique for obtaining VHH sequences directed against a MMR involves suitably immunizing a transgenic mammal that is capable of expressing heavy chain antibodies (i.e., so as to raise an immune response and/or heavy chain antibodies directed against a MMR), obtaining a suitable biological sample from the transgenic mammal (such as a blood sample, or any sample of B-cells), and then generating VHH sequences directed against a MMR starting from the sample, using any suitable technique known per se. For example, for this purpose, the heavy chain antibody-expressing mice and the further methods and techniques described in WO02085945 and in WO04049794 can be used.
Accordingly, the invention encompasses methods of generating immunoglobulin single variable domains according to the invention. As a non-limiting example, a method is provided of generating nanobodies directed against or specifically binding to the macrophage mannose receptor (as described herein), comprising:

    
    
        (i) immunizing an animal with a MMR, in particular a mouse (SEQ ID NOS:260, 261, 263) or human MMR (SEQ ID NOS:258, 259, 262), or a fragment thereof; and
        (ii) screening for nanobodies specifically binding to the MMR.
    
    


For the immunization of an animal with a MMR, the MMR may be produced and purified using conventional methods that may employ expressing a recombinant form of the MMR in a host cell, and purifying the MMR using affinity chromatography and/or antibody-based methods. Any suitable animal, e.g., a warm-blooded animal, in particular a mammal such as a rabbit, mouse, rat, camel, sheep, cow, shark, or pig or a bird such as a chicken or turkey, may be immunized using any of the techniques well known in the art suitable for generating an immune response. The screening for nanobodies, as a non-limiting example, specifically binding to a MMR may, for example, be performed by screening a set, collection or library of cells that express heavy chain antibodies on their surface (e.g., B-cells obtained from a suitably immunized Camelid), or bacteriophages that display a fusion of genIII and nanobody at their surface, by screening of a (naïve or immune) library of VHH sequences or nanobody sequences, or by screening of a (naïve or immune) library of nucleic acid sequences that encode VHH sequences or nanobody sequences, which may all be performed in a manner known per se, and which method may optionally further comprise one or more other suitable steps, such as, for example, and without limitation, a step of affinity maturation, a step of expressing the desired amino acid sequence, a step of screening for binding and/or for activity against the desired antigen (in this case, the MMR), a step of determining the desired amino acid sequence or nucleotide sequence, a step of introducing one or more humanizing substitutions, a step of formatting in a suitable multivalent and/or multispecific format, a step of screening for the desired biological and/or physiological properties (i.e., using a suitable assay known in the art), and/or any combination of one or more of such steps, in any suitable order.
A particularly preferred class of immunoglobulin single variable domains of the invention comprises nanobodies with an amino acid sequence that corresponds to the amino acid sequence of a naturally occurring VHH domain, but that has been “humanized,” i.e., by replacing one or more amino acid residues in the amino acid sequence of the naturally occurring VHH sequence (and in particular in the framework sequences) by one or more of the amino acid residues that occur at the corresponding position(s) in a VH domain from a conventional four-chain antibody from a human being. This can be performed in a manner known per se, which will be clear to the skilled person, on the basis of the further description herein and the prior art on humanization. Again, it should be noted that such humanized nanobodies of the invention can be obtained in any suitable manner known per se (i.e., as indicated under points (1)-(8) above) and thus are not strictly limited to polypeptides that have been obtained using a polypeptide that comprises a naturally occurring VHH domain as a starting material. Humanized nanobodies may have several advantages, such as a reduced immunogenicity, compared to the corresponding naturally occurring VHH domains. Such humanization generally involves replacing one or more amino acid residues in the sequence of a naturally occurring VHH with the amino acid residues that occur at the same position in a human VH domain, such as a human VH3 domain. The humanizing substitutions should be chosen such that the resulting humanized nanobodies still retain the favorable properties of nanobodies as defined herein. The skilled person will be able to select humanizing substitutions or suitable combinations of humanizing substitutions which optimize or achieve a desired or suitable balance between the favorable properties provided by the humanizing substitutions on the one hand and the favorable properties of naturally occurring VHH domains on the other hand.
For example, both “humanization” and “camelization” can be performed by providing a nucleotide sequence that encodes a naturally occurring VHH domain or VH domain, respectively, and then changing, in a manner known per se, one or more codons in the nucleotide sequence in such a way that the new nucleotide sequence encodes a “humanized” or “camelized” nanobody of the invention, respectively. This nucleic acid can then be expressed in a manner known per se, so as to provide the desired nanobody of the invention. Alternatively, based on the amino acid sequence of a naturally occurring VHH domain or VH domain, respectively, the amino acid sequence of the desired humanized or camelized Nanobody of the invention, respectively, can be designed and then synthesized de novo using techniques for peptide synthesis known per se. Also, based on the amino acid sequence or nucleotide sequence of a naturally occurring VHH domain or VH domain, respectively, a nucleotide sequence encoding the desired humanized or camelized Nanobody of the invention, respectively, can be designed and then synthesized de novo using techniques for nucleic acid synthesis known per se, after which the nucleic acid thus obtained can be expressed in a manner known per se, so as to provide the desired nanobody of the invention. Other suitable methods and techniques for obtaining the nanobodies of the invention and/or nucleic acids encoding the same, starting from naturally occurring VH sequences or preferably VHH sequences, will be clear from the skilled person, and may, for example, comprise combining one or more parts of one or more naturally occurring VH sequences (such as one or more FR sequences and/or CDR sequences), one or more parts of one or more naturally occurring VHH sequences (such as one or more FR sequences or CDR sequences), and/or one or more synthetic or semi-synthetic sequences, in a suitable manner, so as to provide a nanobody of the invention or a nucleotide sequence or nucleic acid encoding the same.
Also within the scope of the invention are natural or synthetic analogs, mutants, variants, alleles, homologs and orthologs (herein collectively referred to as “variants”) of the immunoglobulin single variable domains of the invention as defined herein. Some particularly preferred, but non-limiting examples of immunoglobulin single variable domains, as well as combinations of CDR sequences are mentioned in Table 14, which lists the CDR sequences that are present in a number of preferred, but non-limiting immunoglobulin single variable domains of the invention. Thus, according to one embodiment of the invention, the term “immunoglobulin single variable domain of the invention” in its broadest sense also covers such variants, in particular variants of the nanobodies of SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:112, SEQ ID NO:114, SEQ ID NO:116, SEQ ID NOS:126-155 (see Table 4, Table 14). Generally, in such variants, one or more amino acid residues may have been replaced, deleted and/or added, compared to the nanobodies of the invention as defined herein. Such substitutions, insertions or deletions may be made in one or more of the framework regions and/or in one or more of the CDRs, and in particular variants of the CDRs of the nanobodies of SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:112, SEQ ID NO:114, SEQ ID NO:116, SEQ ID NOS:126-155, the CDRs corresponding to SEQ ID NOS:156-251 (Table 14). Variants, as used herein, are sequences wherein each or any framework region and each or any complementarity determining region shows at least 80% identity, preferably at least 85% identity, more preferably 90% identity, even more preferably 95% identity or, still even more preferably 99% identity with the corresponding region in the reference sequence (i.e., FR1_variant versus FR1_reference, CDR1_variant versus CDR1_reference, FR2_variant versus FR2_reference, CDR2_variant versus CDR2_reference, FR3_variant versus FR3_reference, CDR3_variant versus CDR3_reference, FR4_variant versus FR4_reference), as can be measured electronically by making use of algorithms such as PILEUP and BLAST.(50,51) Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information (on the worldwide web at ncbi.nlm.nih.gov/). Such variants of immunoglobulin single variable domains may be of particular advantage since they may have improved potency or other desired properties.
A “deletion” is defined here as a change in either amino acid or nucleotide sequence in which one or more amino acid or nucleotide residues, respectively, are absent as compared to an amino acid sequence or nucleotide sequence of a parental polypeptide or nucleic acid. Within the context of a protein, a deletion can involve deletion of about two, about five, about ten, up to about twenty, up to about thirty or up to about fifty or more amino acids. A protein or a fragment thereof may contain more than one deletion.
An “insertion” or “addition” is that change in an amino acid or nucleotide sequences which has resulted in the addition of one or more amino acid or nucleotide residues, respectively, as compared to an amino acid sequence or nucleotide sequence of a parental protein. “Insertion” generally refers to addition to one or more amino acid residues within an amino acid sequence of a polypeptide, while “addition” can be an insertion or refer to amino acid residues added at an N- or C-terminus, or both termini. Within the context of a protein or a fragment thereof, an insertion or addition is usually of about one, about three, about five, about ten, up to about twenty, up to about thirty or up to about fifty or more amino acids. A protein or fragment thereof may contain more than one insertion.
A “substitution,” as used herein, results from the replacement of one or more amino acids or nucleotides by different amino acids or nucleotides, respectively as compared to an amino acid sequence or nucleotide sequence of a parental protein or a fragment thereof. It is understood that a protein or a fragment thereof may have conservative amino acid substitutions which have substantially no effect on the protein's activity. By conservative substitutions is intended combinations such as gly, ala; val, ile, leu, met; asp, glu; asn, gln; ser, thr; lys, arg; cys, met; and phe, tyr, trp.
By means of non-limiting examples, a substitution may, for example, be a conservative substitution (as described herein) and/or an amino acid residue may be replaced by another amino acid residue that naturally occurs at the same position in another VHH domain. Thus, any one or more substitutions, deletions or insertions, or any combination thereof, that either improve the properties of the nanobody of the invention or that at least do not detract too much from the desired properties or from the balance or combination of desired properties of the nanobody of the invention (i.e., to the extent that the nanobody is no longer suited for its intended use) are included within the scope of the invention. A skilled person will generally be able to determine and select suitable substitutions, deletions or insertions, or suitable combinations of thereof, based on the disclosure herein and optionally after a limited degree of routine experimentation, which may, for example, involve introducing a limited number of possible substitutions and determining their influence on the properties of the nanobodies thus obtained.
According to particularly preferred embodiments, variants of the immunoglobulin single variable domains, in particular the nanobodies of the present invention may have a substitution, deletion or insertion, of one, two or three amino acids in one, two or three of the CDRs, more specifically (i) in CDR1 or CDR2 or CDR3; (ii) in CDR1 and CDR2, or, in CDR1 and CDR3, or, in CDR2 and CDR3; (iii) in CDR1 and CDR2 and CDR3, as listed in Table 14. More preferably, variants of the immunoglobulin single variable domains, in particular the nanobodies, of the present invention may have a conservative substitution (as defined herein) of one, two or three amino acids in one, two or three of the CDRs, more specifically (i) in CDR1 or CDR2 or CDR3; (ii) in CDR1 and CDR2, or, in CDR1 and CDR3, or, in CDR2 and CDR3; (iii) in CDR1 and CDR2 and CDR3, as listed in Table 14.
Further, depending on the host organism used to express the immunoglobulin single variable domain of the invention, such deletions and/or substitutions may be designed in such a way that one or more sites for post-translational modification (such as one or more glycosylation sites) are removed, as will be within the ability of the person skilled in the art. Alternatively, substitutions or insertions may be designed so as to introduce one or more sites for attachment of functional groups (as described herein), for example, to allow site-specific pegylation.
Examples of modifications, as well as examples of amino acid residues within the immunoglobulin single variable domain, preferably the nanobody sequence, that can be modified (i.e., either on the protein backbone but preferably on a side chain), methods and techniques that can be used to introduce such modifications and the potential uses and advantages of such modifications will be clear to the skilled person. For example, such a modification may involve the introduction (e.g., by covalent linking or in another suitable manner) of one or more functional groups, residues or moieties into or onto the immunoglobulin single variable domain of the invention, and in particular of one or more functional groups, residues or moieties that confer one or more desired properties or functionalities to the immunoglobulin single variable domain of the invention. Examples of such functional groups and of techniques for introducing them will be clear to the skilled person, and can generally comprise all functional groups and techniques mentioned in the general background art cited hereinabove as well as the functional groups and techniques known per se for the modification of pharmaceutical proteins, and in particular for the modification of antibodies or antibody fragments (including ScFvs and single domain antibodies), for which reference is, for example, made to Remington's Pharmaceutical Sciences, 16th ed., Mack Publishing Co., Easton, Pa. (1980). Such functional groups may, for example, be linked directly (for example, covalently) to a immunoglobulin single variable domain of the invention, or optionally via a suitable linker or spacer, as will again be clear to the skilled person. One of the most widely used techniques for increasing the half-life and/or reducing immunogenicity of pharmaceutical proteins comprises attachment of a suitable pharmacologically acceptable polymer, such as poly(ethyleneglycol) (PEG) or derivatives thereof (such as methoxypoly(ethyleneglycol) or mPEG). Generally, any suitable form of pegylation can be used, such as the pegylation used in the art for antibodies and antibody fragments (including but not limited to (single) domain antibodies and ScFvs); reference is made to, for example, Chapman, Nat. Biotechnol., 54, 531-545 (2002); by Veronese and Harris, Adv. Drug Deliv. Rev. 54, 453-456 (2003), by Harris and Chess, Nat. Rev. Drug. Discov., 2, (2003) and in WO04060965. Various reagents for pegylation of proteins are also commercially available, for example, from Nektar Therapeutics, USA. Preferably, site-directed pegylation is used, in particular via a cysteine-residue (see, for example, Yang et al., Protein Engineering, 16, 10, 761-770 (2003). For example, for this purpose, PEG may be attached to a cysteine residue that naturally occurs in a nanobody of the invention, a nanobody of the invention may be modified so as to suitably introduce one or more cysteine residues for attachment of PEG, or an amino acid sequence comprising one or more cysteine residues for attachment of PEG may be fused to the N- and/or C-terminus of a nanobody of the invention, all using techniques of protein engineering known per se to the skilled person. Preferably, for the immunoglobulin single variable domains and proteins of the invention, a PEG is used with a molecular weight of more than 5000, such as more than 10,000 and less than 200,000, such as less than 100,000; for example, in the range of 20,000-80,000. Another, usually less preferred modification comprises N-linked or O-linked glycosylation, usually as part of co-translational and/or post-translational modification, depending on the host cell used for expressing the immunoglobulin single variable domain or polypeptide of the invention. Another technique for increasing the half-life of an immunoglobulin single variable domain may comprise the engineering into bifunctional constructs (for example, one nanobody against the target MMR and one against a serum protein such as albumin) or into fusions of immunoglobulin single variable domains with peptides (for example, a peptide against a serum protein such as albumin).
Yet another modification may comprise the introduction of one or more detectable labels or other signal-generating groups or moieties, depending on the intended use of the labeled nanobody. Suitable labels and techniques for attaching, using and detecting them will be clear to the skilled person and, for example, include, but are not limited to, fluorescent labels (such as fluorescein, isothiocyanate, rhodamine, phycoerythrin, phycocyanin, allophycocyanin, o-phthaldehyde, and fluorescamine and fluorescent metals such as Eu or others metals from the lanthanide series), phosphorescent labels, chemiluminescent labels or bioluminescent labels (such as luminal, isoluminol, theromatic acridinium ester, imidazole, acridinium salts, oxalate ester, dioxetane or GFP and its analogs), radio-isotopes, metals, metals chelates or metallic cations or other metals or metallic cations that are particularly suited for use in in vivo, in vitro or in situ diagnosis and imaging, as well as chromophores and enzymes (such as malate dehydrogenase, staphylococcal nuclease, delta-V-steroid isomerase, yeast alcohol dehydrogenase, alpha-glycerophosphate dehydrogenase, triose phosphate isomerase, biotinavidin peroxidase, horseradish peroxidase, alkaline phosphatase, asparaginase, glucose oxidase, beta-galactosidase, ribonuclease, urease, catalase, glucose-VI-phosphate dehydrogenase, glucoamylase and acetylcholine esterase). Other suitable labels will be clear to the skilled person and, for example, include moieties that can be detected using NMR or ESR spectroscopy. Such labeled nanobodies and polypeptides of the invention may, for example, be used for in vitro, in vivo or in situ assays (including immunoassays known per se such as ELISA, RIA, EIA and other “sandwich assays,” etc.) as well as in vivo diagnostic and imaging purposes, depending on the choice of the specific label. As will be clear to the skilled person, another modification may involve the introduction of a chelating group, for example, to chelate one of the metals or metallic cations referred to above. Suitable chelating groups, for example, include, without limitation, diethyl-enetriaminepentaacetic acid (DTPA) or ethylenediaminetetraacetic acid (EDTA). Yet another modification may comprise the introduction of a functional group that is one part of a specific binding pair, such as the biotin-(strept)avidin binding pair. Such a functional group may be used to link the nanobody of the invention to another protein, polypeptide or chemical compound that is bound to the other half of the binding pair, i.e., through formation of the binding pair. For example, a nanobody of the invention may be conjugated to biotin, and linked to another protein, polypeptide, compound or carrier conjugated to avidin or streptavidin. For example, such a conjugated nanobody may be used as a reporter, for example, in a diagnostic system where a detectable signal-producing agent is conjugated to avidin or streptavidin. Such binding pairs may, for example, also be used to bind the nanobody of the invention to a carrier, including carriers suitable for pharmaceutical purposes. One non-limiting example are the liposomal formulations described by Cao and Suresh, Journal of Drug Targeting, 8, 4, 257 (2000). Such binding pairs may also be used to link a therapeutically active agent to the nanobody of the invention.
According to a preferred embodiment, the immunoglobulin single variable domain of the present invention is fused to a detectable label, either directly or through a linker. Preferably, the detectable label is a radio-isotope or radioactive tracer, which is suitable for medical applications, such as in in vivo nuclear imaging. Examples include, without the purpose of being limitative, 99mTc, 123I, 125I, 111In, 18F, 64Cu, 67Ga, 68Ga, and any other radio-isotope which can be used in animals, in particular mouse or human. According to a specific embodiment, the detectable label is 99mTc.
In still another embodiment, the immunoglobulin single variable domain of the present invention is fused to a moiety selected from the group consisting of a toxin, or to a cytotoxic drug, or to an enzyme capable of converting a prodrug into a cytotoxic drug, or to a radionuclide, or coupled to a cytotoxic cell, either directly or through a linker. Specific, but non-limiting examples of such moieties are described in the Example section.
As used herein, “linkers” are peptides of 1 to 50 amino acids length and are typically chosen or designed to be unstructured and flexible. These include, but are not limited to, synthetic peptides rich in Gly, Ser, Thr, Gln, Glu or further amino acids that are frequently associated with unstructured regions in natural proteins.(49) Non-limiting examples of suitable linker sequences are described in the Example section, and include (G4S)3 (GGGGSGGGGSGGGGS; SEQ ID NO:121), llama IgG2 hinge (AHHSEDPSSKAPKAPMA; SEQ ID NO:122) or human IgA hinge (SPSTPPTPSPSTPPAS SEQ ID NO:123) linkers.
In a particular embodiment, the immunoglobulin single variable domains of the invention are in a “multivalent” form and are formed by bonding, chemically or by recombinant DNA techniques, together two or more monovalent immunoglobulin single variable domains. Non-limiting examples of multivalent constructs include “bivalent” constructs, “trivalent” constructs, “tetravalent” constructs, and so on. The immunoglobulin single variable domains comprised within a multivalent construct may be identical or different. In another particular embodiment, the immunoglobulin single variable domains of the invention are in a “multi-specific” form and are formed by bonding together two or more immunoglobulin single variable domains, of which at least one with a different specificity. Non-limiting examples of multi-specific constructs include “bi-specific” constructs, “tri-specific” constructs, “tetra-specific” constructs, and so on. To illustrate this further, any multivalent or multispecific (as defined herein) immunoglobulin single variable domain of the invention may be suitably directed against two or more different epitopes on the same antigen, for example, against two or more different parts of the MMR ectodomain; or may be directed against two or more different antigens, for example, against MMR and one or more other marker of Table 1. Preferably, a monovalent immunoglobulin single variable domain of the invention is such that it will bind to the MMR (as described herein) with an affinity less than 500 nM, preferably less than 200 nM, more preferably less than 10 nM, such as less than 500 μM. Multivalent or multispecific immunoglobulin single variable domains of the invention may also have (or be engineered and/or selected for) increased avidity and/or improved selectivity for the desired MMR, and/or for any other desired property or combination of desired properties that may be obtained by the use of such multivalent or multispecific immunoglobulin single variable domains.
In a further aspect, the present invention also provides a polypeptide comprising any of the immunoglobulin single variable domains according to the invention, either in a monovalent, multivalent or multi-specific form. Thus, polypeptides comprising monovalent, multivalent or multi-specific nanobodies are included here as non-limiting examples.
In still another aspect, the invention also relates to a pharmaceutical composition comprising a therapeutically effective amount of a immunoglobulin single variable domain of the invention, and at least one of pharmaceutically acceptable carrier, adjuvant or diluent.
A “carrier,” or “adjuvant,” in particular a “pharmaceutically acceptable carrier” or “pharmaceutically acceptable adjuvant” is any suitable excipient, diluent, carrier and/or adjuvant which, by themselves, do not induce the production of antibodies harmful to the individual receiving the composition nor do they elicit protection. So, pharmaceutically acceptable carriers are inherently non-toxic and nontherapeutic, and they are known to the person skilled in the art. Suitable carriers or adjuvantia typically comprise one or more of the compounds included in the following non-exhaustive list: large slowly metabolized macromolecules such as proteins, polysaccharides, polylactic acids, polyglycolic acids, polymeric amino acids, amino acid copolymers and inactive virus particles. Carriers or adjuvants may be, as a non limiting example, Ringer's solution, dextrose solution or Hank's solution. Non aqueous solutions such as fixed oils and ethyl oleate may also be used. A preferred excipient is 5% dextrose in saline. The excipient may contain minor amounts of additives such as substances that enhance isotonicity and chemical stability, including buffers and preservatives.
As used herein, the terms “therapeutically effective amount,” “therapeutically effective dose” and “effective amount” mean the amount needed to achieve the desired result or results. As used herein, “pharmaceutically acceptable” means a material that is not biologically or otherwise undesirable, i.e., the material may be administered to an individual along with the compound without causing any undesirable biological effects or interacting in a deleterious manner with any of the other components of the pharmaceutical composition in which it is contained.
Certain of the above-described immunoglobulin single variable domains may have therapeutic utility and may be administered to a subject having a condition in order to treat the subject for the condition.
Accordingly, in a second aspect, the invention relates to a method of preventing and/or treating cancer, comprising administering a pharmaceutically effective amount of an immunoglobulin single variable domain of the invention or a pharmaceutical composition derived thereof to a subject in need thereof.
As used herein, the term “preventing cancer” means inhibiting or reversing the onset of the disease, inhibiting or reversing the initial signs of the disease, inhibiting the appearance of clinical symptoms of the disease. As used herein, “treating cancer” or “treating a subject or individual having cancer” includes substantially inhibiting the disease, substantially slowing or reversing the progression of the disease, substantially ameliorating clinical symptoms of the disease or substantially preventing the appearance of clinical symptoms of the disease. In particular, it includes inhibition of the replication of cancer cells, inhibition of the spread of cancer, reduction in tumor size, lessening or reducing the number of cancerous cells in the body, and/or amelioration or alleviation of the symptoms of cancer. A treatment is considered therapeutic if there is a decrease in mortality and/or morbidity, and may be performed prophylactically, or therapeutically. A variety of subjects or individuals are treatable. Generally the “subjects” are mammals or mammalian, where these terms are used broadly to describe organisms which are within the class mammalia, including the orders carnivore (e.g., dogs and cats), rodentia (e.g., mice, guinea pigs, and rats), and primates (e.g., humans, chimpanzees, and monkeys). In many embodiments, the subjects will be humans.
As used herein, the term “cancer” refers to any neoplastic disorder, including such cellular disorders as, for example, renal cell cancer, Kaposi's sarcoma, chronic leukemia, breast cancer, sarcoma, ovarian carcinoma, rectal cancer, throat cancer, melanoma, colon cancer, bladder cancer, mastocytoma, lung cancer, mammary adenocarcinoma, pharyngeal squamous cell carcinoma, and gastrointestinal or stomach cancer.
In a specific embodiment, the invention relates to a method of inhibiting tumor growth or tumor metastases in a mammal in need thereof comprising selectively targeting TAM subpopulations linked to different intratumoral regions, such as hypoxic or normoxic regions of a solid tumor. As a specific embodiment, the above method comprises administering to the mammal a pharmaceutically effective amount of an immunoglobulin single variable domain or a pharmaceutical composition or a polypeptide according to the invention, in particular an immunoglobulin single variable domain fused to a toxin, or to a cytotoxic drug, or to an enzyme capable of converting a prodrug into a cytotoxic drug, or to a radionuclide, or coupled to a cytotoxic cell, and the like (see also Example section).
As used herein, “TAM subpopulations” refer to distinct subsets of tumor-associated macrophages (TAMs) that are present in a tumor environment, which are characterized by the differential expression of molecular markers. For a detailed description of different TAM subpopulations, reference is made to the Example section, in particular Examples 1 to 8, and Example 24, and Table 1. For example, the macrophage mannose receptor is one of the molecular markers which is specifically expressed on a TAM subpopulation which resides predominantly in the hypoxic regions of a tumor. According to particular embodiments, a TAM subpopulation can be defined as MHC IIlow or MHC IIhi. In a preferred embodiment, the TAM subpopulation is defined as MHC IIlow.
The immunoglobulin single variable domain and/or pharmaceutical composition may be administered by any suitable method within the knowledge of the skilled man. The administration of a nanobody as described above or a pharmaceutically acceptable salt thereof may be by way of oral, inhaled or parenteral administration. In particular embodiments the nanobody is delivered through intrathecal or intracerebroventricular administration. The active compound may be administered alone or preferably formulated as a pharmaceutical composition. An amount effective to treat a certain disease or disorder that express the antigen recognized by the nanobody depends on the usual factors such as the nature and severity of the disorder being treated and the weight of the mammal. However, a unit dose will normally be in the range of 0.01 to 50 mg, for example, 0.01 to 10 mg, or 0.05 to 2 mg of nanobody or a pharmaceutically acceptable salt thereof. Unit doses will normally be administered once or more than once a day, for example, two, three, or four times a day, more usually one to three times a day, such that the total daily dose is normally in the range of 0.0001 to 1 mg/kg; thus a suitable total daily dose for a 70 kg adult is 0.01 to 50 mg, for example, 0.01 to 10 mg or more usually 0.05 to 10 mg. It is greatly preferred that the compound or a pharmaceutically acceptable salt thereof is administered in the form of a unit-dose composition, such as a unit dose oral, parenteral, or inhaled composition. Such compositions are prepared by admixture and are suitably adapted for oral, inhaled or parenteral administration, and as such may be in the form of tablets, capsules, oral liquid preparations, powders, granules, lozenges, reconstitutable powders, injectable and infusable solutions or suspensions or suppositories or aerosols. Tablets and capsules for oral administration are usually presented in a unit dose, and contain conventional excipients such as binding agents, fillers, diluents, tabletting agents, lubricants, disintegrants, colorants, flavorings, and wetting agents. The tablets may be coated according to well known methods in the art. Suitable fillers for use include cellulose, mannitol, lactose and other similar agents. Suitable disintegrants include starch, polyvinylpyrrolidone and starch derivatives such as sodium starch glycolate. Suitable lubricants include, for example, magnesium stearate. Suitable pharmaceutically acceptable wetting agents include sodium lauryl sulphate. These solid oral compositions may be prepared by conventional methods of blending, filling, tabletting or the like. Repeated blending operations may be used to distribute the active agent throughout those compositions employing large quantities of fillers. Such operations are, of course, conventional in the art. Oral liquid preparations may be in the form of, for example, aqueous or oily suspensions, solutions, emulsions, syrups, or elixirs, or may be presented as a dry product for reconstitution with water or other suitable vehicle before use. Such liquid preparations may contain conventional additives such as suspending agents, for example, sorbitol, syrup, methyl cellulose, gelatin, hydroxyethylcellulose, carboxymethyl cellulose, aluminium stearate gel or hydrogenated edible fats, emulsifying agents, for example, lecithin, sorbitan monooleate, or acacia; non-aqueous vehicles (which may include edible oils), for example, almond oil, fractionated coconut oil, oily esters such as esters of glycerine, propylene glycol, or ethyl alcohol; preservatives, for example, methyl or propyl p-hydroxybenzoate or sorbic acid, and if desired conventional flavoring or coloring agents. Oral formulations also include conventional sustained release formulations, such as tablets or granules having an enteric coating. Preferably, compositions for inhalation are presented for administration to the respiratory tract as a snuff or an aerosol or solution for a nebulizer, or as a microfine powder for insufflation, alone or in combination with an inert carrier such as lactose. In such a case the particles of active compound suitably have diameters of less than 50 microns, preferably less than 10 microns, for example, between 1 and 5 microns, such as between 2 and 5 microns. A favored inhaled dose will be in the range of 0.05 to 2 mg, for example, 0.05 to 0.5 mg, 0.1 to 1 mg or 0.5 to 2 mg. For parenteral administration, fluid unit dose forms are prepared containing a compound of the present invention and a sterile vehicle. The active compound, depending on the vehicle and the concentration, can be either suspended or dissolved. Parenteral solutions are normally prepared by dissolving the compound in a vehicle and filter sterilizing before filling into a suitable vial or ampoule and sealing. Advantageously, adjuvants such as a local anesthetic, preservatives and buffering agents are also dissolved in the vehicle. To enhance the stability, the composition can be frozen after filling into the vial and the water removed under vacuum. Parenteral suspensions are prepared in substantially the same manner except that the compound is suspended in the vehicle instead of being dissolved and sterilized by exposure to ethylene oxide before suspending in the sterile vehicle. Advantageously, a surfactant or wetting agent is included in the composition to facilitate uniform distribution of the active compound. Where appropriate, small amounts of bronchodilators, for example, sympathomimetic amines such as isoprenaline, isoetharine, salbutamol, phenylephrine and ephedrine; xanthine derivatives such as theophylline and aminophylline and corticosteroids such as prednisolone and adrenal stimulants such as ACTH may be included. As is common practice, the compositions will usually be accompanied by written or printed directions for use in the medical treatment concerned. All these medicaments can be intended for human or veterinary use.
The efficacy of the immunoglobulin single variable domains of the invention, and of compositions comprising the same, can be tested using any suitable in vitro assay, cell-based assay, in vivo assay and/or animal model known per se, or any combination thereof, depending on the specific disease or disorder involved.
In a specific embodiment it should be clear that the therapeutic method of the present invention against cancer can also be used in combination with any other cancer therapy known in the art such as irradiation, chemotherapy or surgery.
Reliable hypoxia tracers that can be used for non-invasive tumor imaging are currently unavailable or limiting. The availability of such tracers would represent a significant progress in the field of radiotherapy, since they would allow the radiotherapist to adapt the radiation dose, depending on the targeted tumor region (hypoxic versus normoxic). The identification of tumor-associated macrophage (TAM) subsets that are situated in hypoxic/normoxic environments allows for the identification of macrophage-specific biomarkers that can be used for non-invasive imaging of hypoxic/normoxic areas in tumors. For example, MMR represents such a marker, since it is preferentially expressed on the hypoxic MHC IIlow TAMs. Due to their small size and high tumor penetrance, nanobodies are the ideal format for non-invasive imaging. Nanobodies raised against markers that are preferentially expressed on the hypoxic MHC IIlow TAMs can be used for the imaging of hypoxia in tumors. The anti-MMR nanobodies can be used in this respect.
Other applications of TAM subset-specific nanobodies, coupled to tracers for imaging (for example, Near Infrared Fluorescent or NIRF tracers), include but are not limited to (i) accurately quantifying the amount of TAM or TAM subsets inside any given tumor, which can be of prognostic value, (ii) assessing the impact of therapy—including TAM-directed therapies as presently claimed—on the amount and/or the activation state of TAM, (iii) visualizing hypoxic/normoxic regions within the tumor.
Accordingly, in a further aspect, the present invention also encompasses a method of in vivo imaging tumor cells in a subject, the method comprising the step of:

    
    
        administering to the subject an immunoglobulin single variable domain according to the invention fused to a detectable label.
    
    


As used herein, “tumor cells” or simply “tumor” refers to the tumor tissue as a whole, including different cell types that are present in a tumor environment. Tumor cells include cancer cells but also non-transformed host cells, or tumor-associated stroma cells. Examples of tumor-associated stroma cells include myeloid cells, in particular tumor-associated macrophages.
Preferably, the above described method may further comprise one or more of the following steps of:

    
    
        selectively targeting and/or visualizing tumor-associated macrophage (TAM) subpopulations linked to different intratumoral regions, in particular wherein the intratumoral regions include a hypoxic or normoxic region of a solid tumor;
        determining a relative percentage of the TAM subpopulations, and optionally assessing the impact of a cancer therapy on the relative percentage of the tumor-associated macrophage subpopulations;
    
    


Further, in still another aspect, the present invention envisages a method of diagnosing cancer or prognosing cancer aggressiveness in a subject suffering from or suspected to suffer from cancer comprising the steps of:

    
    
        utilizing any of the immunoglobulin single variable domains according to the invention to determine the relative percentage of tumor-associated macrophage subpopulations in the subject; and
        diagnosing cancer or prognosing cancer aggressiveness in the subject according to the relative percentage of the TAM subpopulations; and optionally
        assessing the impact of a cancer therapy on the relative percentage of the tumor-associated macrophage subpopulations.
    
    


In particular embodiments, the method comprises the steps of (i) providing a sample from the individual comprising cancer cells or suspected to comprise cancer cells; (ii) determining in the sample the relative percentage of TAM subpopulations; (iii) classifying the individual as having a good/prognosis or diagnosing the individual as having cancer according to the results of step (ii). To further illustrate this, reference is made to Example 19.
A sample may comprise any clinically relevant tissue sample, such as a tumor biopsy or fine needle aspirate, or a sample of bodily fluid, such as blood, plasma, serum, lymph, ascitic fluid, cystic fluid, urine or nipple exudate. The sample may be taken from a human, or, in a veterinary context, from non-human animals such as ruminants, horses, swine or sheep, or from domestic companion animals such as felines and canines. The sample may also be paraffin-embedded tissue sections. It is understood that the cancer tissue includes the primary tumor tissue as well as a organ-specific or tissue-specific metastasis tissue.
In the context of the present invention, prognosing an individual suffering from or suspected to suffer from cancer refers to a prediction of the survival probability of individual having cancer or relapse risk which is related to the invasive or metastatic behavior (i.e., malignant progression) of tumor tissue or cells. As used herein, “good prognosis” means a desired outcome. For example, in the context of cancer, a good prognosis may be an expectation of no recurrences or metastasis within two, three, four, five years or more of initial diagnosis of cancer. “Poor prognosis” means an undesired outcome. For example, in the context of cancer, a poor prognosis may be an expectation of a recurrence or metastasis within two, three, four, or five years of initial diagnosis of cancer. Poor prognosis of cancer may indicate that a tumor is relatively aggressive, while good prognosis may indicate that a tumor is relatively nonaggressive.
As used herein, the terms “determining,” “measuring,” “assessing,” and “assaying” are used interchangeably and include both quantitative and qualitative determinations. In particular, ways to determine the relative percentage of TAM subpopulations are known to the person skilled in the art, for example, by using flow cytometry, and is illustrated into more detail, but without the purpose of being limitative, in the Example section.
Next, it is commonly known that finding tumor-specific markers for antibody-based targeting remains a difficult task. This is especially true when targeting the tumor stroma, since stromal antigens are typically not restricted to tumors. This may hamper the usefulness of these tools both for diagnostic and therapeutic applications. Therefore, a strategy was developed to reduce the targeting of tracers to healthy organs to background levels, while preserving an efficient targeting of the tumor. Unexpectedly, it was found that co-injecting monovalent labeled nanobody directed against the macrophage mannose receptor and excess of unlabeled bivalent immunoglobulin single variable domain directed against the same target, blocked all extratumoral sites, while only slightly affecting tumor-specific tracer uptake. The monovalent-labeled—bivalent-unlabeled immunoglobulin single variable domain approach as described herein is especially attractive since bivalent immunoglobulin single variable domains do not efficiently compete for free binding sites in the tumor, while they block extratumoral sites much more efficiently.
Thus, according to a preferred embodiment, any of the above described methods for in vivo imaging, diagnosis/prognosis or treatment of cancer may comprise an additional step of co-administering a monovalent labeled immunoglobulin single variable domain according to the invention and an unlabeled bivalent form of an immunoglobulin single variable domain directed against the same target (macrophage mannose receptor) to block extratumoral binding sites. According to a preferred embodiment, the unlabeled bivalent form of the anti-MMR immunoglobulin single variable domain may comprise two identical or two different immunoglobulin single variable domains, as long as at least one of the immunoglobulin single variable domains is directed against the same target (macrophage mannose receptor). As used herein, “unlabeled” refers to the absence of a detectable label, in particular a radio-isotope or radio-active tracer as defined hereinbefore. It should be clear that this does not exclude the absence of another modification (as defined hereinbefore).
A further aspect of the invention relates to a method for producing an immunoglobulin single variable domain according to the invention or a polypeptide comprising an immunoglobulin single variable domain according to the invention, the method comprising the steps of:

    
    
        expressing, in a suitable host cell or expression system, a nucleic acid sequence encoding an immunoglobulin single variable domain or a polypeptide comprising an immunoglobulin single variable domain according to the invention; and optionally
        isolating and/or purifying the immunoglobulin single variable domain or the polypeptide.
    
    


Suitable expression systems include constitutive and inducible expression systems in bacteria or yeasts, virus expression systems, such as baculovirus, semliki forest virus and lentiviruses, or transient transfection in insect or mammalian cells. Suitable host cells include E. coli, Lactococcus lactis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Pichia pastoris, and the like. Suitable animal host cells include HEK 293, COS, S2, CHO, NSO, DT40 and the like. The cloning, expression and/or purification of the immunoglobulin single variable domains can be done according to techniques known by the skilled person in the art.
The following examples more fully illustrate preferred features of the invention, but are not intended to limit the invention in any way. Those having ordinary skill in the art and access to the teachings herein will recognize additional modifications and embodiments within the scope thereof. Therefore, the present invention is limited only by the claims attached herein. All of the starting materials and reagents disclosed below are known to those skilled in the art, and are available commercially or can be prepared using well-known techniques.
EXAMPLES
Material and Methods to the Examples
Mice and Cell Lines
Female Balb/c and C57BL/6 mice were purchased from Harlan. Balb/c CX3CR1GFP/GFP mice were a gift from Dr. Grégoire Lauvau (Universite de Nice-Sophia Antipolis, France) and Dr. Frédéric Geissmann (King's College London, UK). C57BL/6 MMR-deficient, CCR2-deficient and MMTVPyMT mice were provided by Etienne Pays (Universite Libre de Bruxelles), Frank Tacke (Aachen University) and Massimiliano Mazzone (KULeuven), respectively. All animal studies were approved by and performed according to the guidelines of the institutional review board. The Balb/c mammary adenocarcinoma cell line) TS/A(10) was provided by Dr. Vincenzo Bronte (Istituto Oncologico Veneto, Italy). The Balb/c mammary adenocarcinoma TS/A and 3LL-R clone of the C57BL/6 Lewis Lung Carcinoma and were injected subcutaneously (sc) in the flank or in the fat pads (3×106 cells). 12 to 14 days after inoculation, TS/A and 3LL-R tumor-bearing mice were imaged. MMTV-PyMT mice bearing macroscopic tumors were consecutively imaged with distinct tracers 48 to 72 hours apart. Tumor dissection and flow cytometry were performed 96 hours after the last scan.
Tumor Preparation, Flow Cytometry and Cell Sorting
Tumors were chopped and incubated for 25 minutes (37° C.) with 10 U/ml Collagenase typel, 400 U/ml Collagenase typeIV and 30 U/ml DNAseI (Worthington). Density gradients (Axis-Shield) were used to remove tissue debris and dead cells.
Commercial antibodies used for cell surface stainings are found in Table 2. Non-labeled anti-CCR2 (MC-21) was a gift of Dr. Matthias Mack (University of Regensburg, Germany). To prevent aspecific binding, rat anti-mouse CD16/CD32 (clone 2.4G2, BD Biosciences) was used. Nanobodies were labeled using Nanobodies were labeled using the Alexafluor®488 or Alexafluor®647 Protein Labeling kit (Invitrogen) according to the manufacturers' instructions.
To purify TAMs, CD11b+ cells were isolated via MACS using anti-CD11b microbeads (Miltenyi Biotec). Subsequently, cells were sorted using a BD FACSAriaTM II (BD Biosciences).
In Vivo Labeling of Blood Monocytes
Latex labeling of blood monocytes was performed as described earlier.(19,20) Briefly, to label Ly6Clow monocytes and track their infiltration in tumors, mice were injected intravenously (iv) with 250 μl of 0.5 μm fluoresbrite yellow-green microspheres (Polysciences) diluted 1:25 in PBS. Twenty-four hours later, mice received sc TS/A injections. To label and track Ly6Chi monocytes, mice were injected iv with 250 μl of clodronate liposomes. Eighteen hours later, mice received iv latex injection and sc TS/A injection. Clodronate was a gift from Roche and was incorporated into liposomes as previously described.(21) 
Bromodeoxyuridine Labeling and Ki67 Stainings
Tumor-bearing mice (14 days pi) were given an initial intraperitoneal injection of 1 mg BrdU (BD Biosciences), followed by continuous BrdU administration in the drinking water at a concentration of 0.8 mg/ml (Sigma). Tumors were collected after consecutive time points and BrdU intracellular stainings were performed following the manufacturer's instructions (BrdU labeling Kit, BD Biosciences). PE-labeled anti-Ki67 or matching isotype controls (BD Biosciences) was added together with FITC-labeled anti-BrdU in the final step of the intracellular staining protocol.
RNA Extraction, cDNA Preparation and Quantitative Real-Time PCR
RNA was extracted using TRIzol (Invitrogen) and was reverse-transcribed with oligo(dT) and SuperScript II RT (Invitrogen), following the manufacturer's instructions. Quantitative real-time PCR was performed in an iCycler, with iQ SYBR Green Supermix (Bio-Rad) using gene-specific primers (Table 2). PCR cycles consisted of 1-minute denaturation at 94° C., 45-second annealing at 55° C., and 1-minute extension at 72° C. Gene expression was normalized according to the expression of ribosomal protein S12.
Intracellular TNFα and iNOS Stainings
For intracellular TNFα stainings, freshly isolated TAMs were cultured in vitro for 1 hour, after which Brefeldin A (BD Biosciences) was added. Five hours later cells were fixed, permeabilized (Fix/Perm kit, eBioScience) and stained with anti-TNFα. For intracellular iNOS stainings, freshly isolated TAMs were cultured in vitro with or without 10 U/ml IFNγ and/or 10 ng/ml LPS. 12 hours later cells were fixed, permeabilized and stained with anti-iNOS. Normalized delta-Median Fluorescence Intensity (AMFI) was calculated as follows: [(MFI iNOS staining)−(MFI isotype staining)]/(MFI iNOS staining) FACS data were acquired using a BD FACSCanto II (BD Biosciences).
Measurement of Arginase Activity
The arginase activity in the lysate of 5 105 sorted TAMs was measured as described earlier.(22) 
Immunohistochemistry and Hypoxia Measurements
For hypoxia stainings, tumor-bearing mice were injected with 80 mg/kg body weight pimonidazole (Hypoxyprobe-1, HP-1, HPI Inc.) and 2 hours later tumors were collected.
For immunohistochemistry, tumors were snap-frozen in liquid nitrogen and 5 μm sections were made. Sections were fixed for 10 minutes in ice-cold aceton. To block aspecific binding sites, sections were incubated 30 minutes with 10% normal donkey serum (Jackson ImmunoResearch Laboratories). For CD11b, MHC II and anti-HP-1 triple stainings, sections were: (1) incubated 30 minutes with purified rat anti-CD11b (BD Biosciences) and purified rabbit anti-HP-1 (HPI Inc.) (2) incubated 30 minutes with F(ab′)2 donkey anti-Rat/Cy3 (Jackson ImmunoResearch Laboratories) and F(ab′)2 donkey anti-rabbit/Cy5 (Jackson ImmunoResearch Laboratories) (3) remaining anti-rat binding sites were blocked with 5% normal rat serum (Jackson ImmunoResearch Laboratories) (4) incubated 30 minutes with rat anti-MHC II/alexa-fluor 488 (M5/114.15.2 Biolegend). Rat anti-MECA32 (Pan-endothelial cell antigen) was from BD Biosciences. Sections were mounted with fluorescent mounting medium (Dako). Pictures were acquired with a Plan-Neofluar 10×/0.30 or Plan-Neofluar 20×/0.50 (Carl Zeiss) objective on a Zeiss Axioplan 2 microscope (Carl Zeiss) equipped with an Orca-R2 camera (Hamamatsu) and Smartcapture 3 software (Digital Scientific UK). For flow cytometric HP-1 measurements, tumor single cell suspensions were made, and cells were fixed and permeabilized using the BD Biosciences Fix/Perm kit. Finally, rat anti-HP1/FITC (HPI Inc.) was added for 30 minutes at 37° C.
Determining Latex Phagocytosis In Vivo and In Vitro
For measuring in vivo latex uptake by TAMs, tumor-bearing mice were injected iv with 250 μl of yellow-green latex microspheres (Polysciences) diluted 1:25 in PBS. 1-2 hours later, tumor single cell suspensions were made and latex uptake by tumor CD11b+ cells was assessed via FACS. For in vitro latex uptake, freshly isolated TAMs were cultured in 96-well plates for 40 minutes at 4° C. or 37° C., in the presence of latex (diluted 1:5000).
Chorioallantoic Membrane Angiogenesis Assays
Chorioallantoic membrane (CAM) assays were performed as described earlier.(23) Briefly, fertilized white leghorn chicken eggs (Wyverkens, Halle, Belgium) were incubated at 37° C. for three days prior to removing 3 ml of albumen to detach the shell from the developing CAM. Next, a window was made in the eggshell to expose the CAM. At day 9, sterile absorbable gelatin sponges (1-2 mm3; Hospithera, Brussels, Belgium) were impregnated with 5×104 sorted TAM subsets and placed on the CAM. Sponges were also loaded with PBS/0.1% BSA (1 mg/ml, <50 μg/embryo) as negative control and with recombinant human VEGF-A165 (100 μg/ml, <5 μg/embryo) as positive control. At day 13, membranes were fixed with 4% paraformaldehyde and the area around the implants was analyzed using a Zeiss Lumar V.12 stereomicroscope with NeoLumar S1.5× objective (15× magnification). Digital images were captured using an AxioCam MRc5 and processed with Axiovision 4.5 Software (Zeiss). To determine the number of blood vessels, a grid containing three concentric circles with diameters of 4, 5, and 6 mm was positioned on the surface of the CAM and all vessels radiating from the sample spot and intersecting the circles were counted under a stereomicroscope.
DQ-OVA Processing, MLR Assays, Suppression Assays
To assess TAM antigen processing, tumor single cell suspensions were incubated for 15 minutes at 0° C. or 37° C. in the presence of 10 μg/ml DQ-OVA (Molecular Probes), allowing for antigen uptake. After thorough washing, cells could further process DQ-OVA intracellularly during different time intervals, at 0° C. or 37° C. Following each time interval, cells were surface labeled and DQ-OVA fluorescence in each TAM subset was measured via FACS.
For Mixed Leukocyte Reaction (MLR) assays, T cells were purified from C57BL/6 spleens, by first depleting CD11c+ and CD19+ cells on a MACS LD column using anti-CD11c and anti-CD19 microbeads (Miltenyi biotech) and subsequently positively selecting CD4+ or CD8+ T cells using anti-CD4 or anti-CD8 microbeads (Miltenyi biotech). 2×105 purified C57BL/6 T cells were cultured with 5×104 sorted Balb/c TAMs or cDCs, in round-bottom 96-well plates. Three days later 3H-thymidine was added and cells were allowed to proliferate for another 18 hours before incorporated radioactivity was measured.
For T-cell suppression assays, 1×105 (1:2), 5×104 (1:4), 2.5×104 (1:8) or 1.25×104 (1:16) sorted TAMs or cDCs were added to 2×105 naive Balb/c splenocytes, in flat-bottom 96-well plates. These co-cultures were promptly stimulated with 1 μg/ml anti-CD3, 24 hours later 3H-thymidine was added and cells were allowed to proliferate for another 18 hours before incorporated radioactivity was measured. L-NMMA (0.5 mM, Sigma), nor-NOHA (0.5 mM, Calbiochem), or both, were added from the beginning of the culture. The Relative % suppression of proliferation was calculated as described earlier:(24) (% Suppression without inhibitor)/(% Suppression with inhibitor)×100, with % Suppression calculated as [1-(proliferation of splenocytes)/(proliferation splenocytes+TAMs)]×100.
Sorting of Splenic Conventional DCs
To purify splenic conventional DCs, spleens were flushed with 200 U/ml collagenase III (Worthington) and squashed. Subsequently, CD11c+ cells were enriched via MACS, using anti-CD11c microbeads (Miltenyi Biotec), after which CD11c+MHC IIhiB220−Ly6C− DCs were sorted using a BD FACSAriaTM II (BD Biosciences).
Statistics
Statistical significance was determined by the Student's t test, using Microsoft Excel or GraphPad Prism 4.0 software. Differences were considered significant when P≦0.05. Geometric means and confidence intervals were determined using Microsoft Excel.
Where multiple comparisons are made (nine to ten different organs), the p-values of the student's t test were adjusted by Holm's procedure.(42) The R environment(43) and the multtest package(44) were used for statistical analyses and figures. The significance of the student t tests and corrections for multiple testing was set to 0.05.
Generation of Mono- and Bivalent Anti-MMR Nanobodies
The anti-MMR Nanobody (Nb) clone 1 was isolated from an immune phage library in a similar way as described before.(30,31) In brief, an alpaca (Vicugna pacos) was immunized with 100 μg MMR (R&D Systems) six times at weekly intervals. mRNA prepared from peripheral blood lymphocytes was used to make cDNA with the Ready-to-Go You-prime-first-strand beads (GE Healthcare). The gene sequences encoding the VHHs were PCR amplified using the CALL001/CALL002 and A6E/38 primer pairs. These PCR fragments were ligated into the pHEN4 phagemid vector after digestion with the PstI and BstEII restriction enzymes. Using M13K07 helper phage infection, the VHH library was expressed on phages and specific Nanobody-phages were enriched by several consecutive rounds of in vitro selection on microtiter plates (Nunc). Individual colonies were screened in ELISA for antigen recognition with non-specific phage particles serving as a negative control. The VHH genes of the clones that scored positive in ELISA were recloned into the expression vector pHEN6 using the restriction enzymes PstI and BstEII. Expression in the periplasm and purification of Nanobody was performed as described previously.(28) 
Bivalent Nanobodies were generated by recombinantly attaching a linker sequence 3′ of the VHH sequence using PCR primer biNbF (5′-CCG GCC ATG GCC CAG GTG CAG CTT CAG GAG TCT GG AGG AGG-3′; SEQ ID NO:117) and primers biNbG4SR (5′-TGA TTC CTG CAG CTG CAC CTG ACT ACC GCC GCC TCC AGA TCC ACC TCC GCC ACT ACC GCC TCC GCC TGA GGA GAC GGT GAC CTG GGT C-3′; SEQ ID NO:118), biNbg2cR (5′-TGA TTC CTG CAG CTG CAC CTG TGC CAT TGG AGC TTT GGG AGC TTT GGA GCT GGG GTC TTC GCT GTG GTG CGC TGA GGA GAC GGT GAC CTG GGT C-3′; SEQ ID NO:119), biNbIgAR (5′-TGA TTC CTG CAG CTG CAC CTG ACT TGC CGG TGG TGT GGA TGG TGA TGG TGT GGG AGG TGT AGA TGG GCT TGA GGA GAC GGT GAC CTG GGT C-3′; SEQ ID NO:120) which code for a (G45)3 (GGGGSGGGGSGGGGS; SEQ ID NO:121), llama IgG2 hinge (AHHSEDPSSKAPKAPMA; SEQ ID NO:122) or human IgA hinge (SPSTPPTPSPSTPPAS; SEQ ID NO:123) linker respectively. These PCR fragments were inserted 5′ of the VHH gene in the original VHH expression vector with a PstI/BstEII restriction digest. After ligation, the resulting bivalent anti-MMR Nanobody vector was expressed as described above.
Construction and Production Anti-MMR-PE38 Immunotoxins
Anti-MMR-PE38 toxin fusions were generated using the anti-MMR bivalent Nanobodies as templates. The PE38 (recombinant Pseudomonas Exotoxin A(33) gene was PCR amplified from the pET28aCD11scFv-PE38 vector(32) using the PE38HF (5′-ATT GAA TTC TAT TAG TGG TGG TGG TGG TGG TGC TCG AGT G -3′; SEQ ID NO:124) and PE38bisR (5′-TTA ACT GCA GAT GGC CGA AGA GGG CGG CAG CCT-3′; SEQ ID NO:125) primers. During this PCR reaction a PstI and EcoRI restriction site were introduced 5′ and 3′ of the PE38 gene respectively. Both the PE38 PCR fragments and the pHEN6 vectors containing bivalent anti-MMR Nanobody genes with a (G4S)3 (GGGGSGGGGSGGGGS; SEQ ID NO:121), llama IgG2 hinge (AHHSEDPSSKAPKAPMA; SEQ ID NO:122) or human IgA hinge (SPSTPPTPSPSTPPAS; SEQ ID NO:123) linker were digested using PstI and EcoRI restriction enzymes. By ligating the PE38 gene fragment in the pHEN6 vector fragments, the PE38 gene was fused to the 3′ end of the anti-MRR Nanobody-linker gene. The resulting immunotoxin constructs were produced and purified in the same manner as the mono- and bivalent anti-MMR Nanobody constructs.
Surface Plasmon Resonance
Affinity analysis was performed using a BIAcore T100 (GE Healthcare) with HEPES-buffered saline running buffer (10 mM HEPES with 0.15 M NaCl, 3.4 mM EDTA and 0.005% surfactant P20 at pH 7.4). MRR was immobilized on a CM5 chip in acetate buffer 50 mM (pH 5.0), resulting in 2100 RU MMR coated on the chip. A second channel on the same chip was activated/deactivated in a similar way and served as a negative control. The MMR Nanobodies were used as analytes in eleven different concentrations, ranging from 1 to 2000 nM, at a flow rate of 10 ml/min. Glycine-HCl 50 mM (pH 2.0) was used for elution. The kinetic and equilibrium parameters (kd, ka and KD) values were calculated from the combined sensogram of all concentrations using BIAcore T100 evaluation software 2.02 (GE Healthcare).
Nanobody Purification
All Nanobody proteins were purified from E. coli periplasmic extracts using immobilized metal affinity chromatography (IMAC) on Ni-NTA resin (Sigma-Aldrich, St. Louis, Mo.) followed by size exclusion chromatography (SEC) on Superdex 75 HR 10/30 (Pharmacia, Gaithersburg, Md.) in phosphate buffered saline pH 7.4 (PBS).
Nanobody Labeling and In Vitro Characterization of 99mTc-Labeled Nanobodies
Nanobodies were labeled with 99mTc at their hexahistidine tail. For the labeling, [99mTc(H2O)3(CO)3]+ was synthesized by adding 1 mL of 99mTcO4− (0.74-3.7 GBq) to an Isolink kit (Mallinckrodt Medical BV) containing 4.5 mg of sodium boranocarbonate, 2.85 mg of sodium tetraborate.10H2O, 8.5 mg of sodium tartrate.2H2O, and 7.15 mg of sodium carbonate, pH 10.5. The vial was incubated at 100° C. in a boiling bath for 20 minutes. The freshly prepared [99mTc(H2O)3(CO)3]+ was allowed to cool at room temperature for 5 minutes and neutralized with 125 μL of 1 M HCl to pH 7-8. [99mTc(H2O)3(CO)3]+ was added to 50 μL of 1 mg/mL monovalent Nanobody or 2 mg/ml bivalent Nanobody, together with 50 μL of carbonate buffer, pH 8. The mixture was incubated for 90 minutes at 52° C. in a water bath. The labeling efficiency was determined by instant thin-layer chromatography in acetone as mobile phase and analyzed using a radiometric chromatogram scanner (VCS-201; Veenstra). When the labeling yield was less than 90%, the 99mTc-Nanobody solution was purified on a NAP-5 column (GE Healthcare) pre-equilibrated with phosphate-buffered saline (PBS) and passed through a 0.22 μm Millipore filter to eliminate possible aggregates.
Pinhole SPECT-microCT Imaging Procedure
Mice were intravenously injected with 100-200 μl 45-155 MBq (about 5-10 μg) of 99mTc-Nanobody, with or without an excess of concentrated monovalent or bivalent unlabeled Nanobody. Mice were anesthetized with a mixture of 18.75 mg/kg ketamine hydrochloride (Ketamine 1000®, CEVA, Brussels, Belgium) and 0.5 mg/kg medetomidin hydrochloride (Domitor®, Pfizer, Brussels, Belgium) 10-15 minutes before pinhole SPECT acquisition.
MicroCT imaging was followed by pinhole SPECT on separate imaging systems. MicroCT was performed using a dual source CT scanner (Skyscan 1178, Skyscan, Aartselaar, Belgium) with 60 kV and 615 mA at a resolution of 83 μm. The total body scan time was 2 minutes. Image reconstruction was performed using filtered backprojection (Nrecon, Skyscan, Aartselaar, Belgium). Total body pinhole SPECT was performed at 60 minutes or 180 minutes post-injection (p.i.) using a dual headed gamma camera (e.cam180 Siemens Medical Solutions, IL, USA), mounted with two multi-pinhole collimators (three pinholes of 1.5 mm in each collimator, 200 mm focal length, 80 mm radius of rotation). Images were acquired over 360 degrees in 64 projections of 10 s into 128×128 matrices resulting in a total imaging time of 14 minutes. The SPECT images were reconstructed using an iterative reconstruction algorithm (OSEM) modified for the three pinhole geometry and automatically reoriented for fusion with CT based on six 57Co landmarks.
Image Analysis
Image viewing and quantification was performed using AMIDE Medical Image Data Examiner software. Ellipsoid regions of interest (ROIs) were drawn around the tumor and major organs. Uptake was calculated as the counts in the tissue divided by the injected activity counts and normalized for the ROI size (% IA/cm3). High-resolution image 3D-reconstructions were generated using OsiriX Imaging Software.
Biodistribution Analysis
Thirty minutes after microCT/SPECT acquisition, mice were sacrificed with a lethal dose of pentobarbital (Nembutal; CEVA). Tumor, kidneys, liver, lungs, muscle, spleen, lymph nodes, bone, heart, and blood were removed and weighed, and the radioactivity was measured using an automated γ-counter (Cobra II Inspector 5003; Can berra-Packard). Tissue and organ uptake was calculated as percentage of injected activity per gram of tissue (% IA/g), corrected for decay.
Immunofluorescence Stainings
Mice were injected intravenously with 500 μg Alexa-fluor647-labeled Nbs and intraperitoneally with 80 mg/kg pimonidazole [hypoxyprobe-1, HPI, Inc.] for hypoxia stainings Two hours later, tumors were fixed in 4% paraformaldehyde, rehydrated overnight (20% sucrose) and sectioned (5 μm). Antibodies were: rat anti-F4/80/alexa-fluor488 (CI:A3-1, Serotec), F(ab′) 2 donkey anti-rabbit/Cy3 Jacksonlmmuno). Pictures were acquired with a Plan-Neofluar 10×/0.30 or 20×/0.50 (Carl Zeiss) objective on a Zeiss Axioplan2 microscope with an Orca-R2 camera (Hamamatsu) and Smartcapture 3 software (Digital Scientific UK).
Activation of Immune Cells In Vitro and In Vivo
Mono- or bivalent α-MMR and BCII10 Nbs were added in varying concentrations to bone marrow-derived dendritic cells (BMDCs) or bone marrow-derived macrophages (BMDMs) (0.2 μg/ml, 2 μg/ml and 20 μg/ml for monovalent Nbs and 0.4 μg/ml, 4 μg/ml and 40 μg/ml for bivalent Nbs) for 24 hours in vitro in the presence or absence of LPS (10 ng/ml).
For assessment of the effect of α-MMR Nb in vivo, naïve mice and 13 days 3LL-R tumor-bearing mice were injected intravenously with 5 μg monovalent Nb+200 μg bivalent Nb. After 0 hours, 6 hours and 24 hours, blood serum was collected by heart puncture, incubated for 30 minutes at 37° C. and centrifuged (1000×g, 10 minutes).
Cytokines and chemokines were quantified in culture supernatants or blood serum with specific sandwich ELISAs for IL-10 (BD Biosiences), TNF (R&D Systems), CCL17 (R&D Systems), IL1Ra (R&D Systems) or CCL22 (R&D Systems) in accordance with the protocol provided by the manufacturer.
Generation of Anti-Human MMR and Anti-Human/Mouse MMR Cross-Reactive Nanobodies
The anti-human macrophage mannose receptor (MMR) and anti-human/mouse MMR cross-reactive nanobodies (Nbs) were isolated from an immune phage library in a similar way as described before.(29, 30, 31) However, in order to generate cross-reactive Nbs, an alternating immunization schedule was carried out. An alpaca (Vicugna pacos) was immunized with 100 μg human MMR (R&D Systems #2534) followed by 100 μg mouse MMR (R&D Systems #2535) one week later. This alternating schedule was maintained for a total of 6 weeks and both proteins were mixed with the Gerbu adjuvant before injection. After immunization, blood was collected and the peripheral blood lymphocytes were isolated. mRNA was extracted from these cells using TRIzol (Invitrogen) and was reverse-transcribed with oligo(dT) and SuperScript II RT (Invitrogen), following the manufacturer's instructions. The gene sequences encoding the variable domains (VHHs) were PCR amplified, with the leader sequence specific CALL001 (5′-GTC CTG GCT CTC TTC TAC AAG G-3′; SEQ ID NO:252) and CH2 exon specific CALL002 (5′-GGT ACG TGC TGT TGA ACT GTT CC-3′; SEQ ID NO:253) primers. After 1% agarose gel separation, the 600 bp fragment VHH-CH2 fragment was isolated from gel and re-amplified using the nested primers A6E (5′-GAT GTG CAG CTG CAG GAG TCT GGR GGA GG-3′; SEQ ID NO:254) and PMCF (5′-CTA GTG CGG CCG CTG AGG AGA CGG TGA CCT GGG T-3′; SEQ ID NO:255) specific for the framework-1 and framework-4 regions, respectively. These PCR fragments were ligated into the phagemid vector pMECS, a variant of pHEN4,(52) after digestion with the PstI and NotI restriction enzymes. The pMECS differs from the pHEN4 in coding for a HA (YPYDVPDYGS; SEQ ID NO:256) and 6xhistidine tag fusion at the C-terminus of the Nb instead of a HA tag only fusion. Ligated material was transformed in freshly prepared E. coli TG1 cells and plated on LB plates with ampicillin. The colonies were scraped from the plates, washed and stored at −80° C. in LB-medium supplemented with glycerol (50% final concentration). Using M13VCS helper phage infection, the VHH library was expressed on phages. Specific Nanobody-phages were enriched by several consecutive rounds of in vitro selection on antigen coated to wells of microtiter plates (Nunc). For isolation of human/mouse MMR cross-reactive Nbs, screening was performed using human and mouse MMR alternatingly. Bound phage particles were eluted with 100 mM triethylamine (pH 11.0), immediately neutralized with 1 M Tris-HCl (pH 7.4) and used to infect E. coli TG1 cells. Individual colonies were picked and expression of recombinant Nanobody-M13 protein III by addition of 1 mM isopropyl-β-D-thiogalac-topyranoside (IPTG). The periplasmic extract of each clone was subsequently tested in ELISA for human MMR recognition with non-specific antigen coated wells serving as a negative control. Human/mouse MMR cross-reactive Nbs were also screened in a similar fashion against mouse MMR, only clones reactive with both human and mouse antigens were withheld as cross-reactive Nbs. Each ELISA was performed on plates coated with 1 μg/ml MMR in 100 mM NaHCO3 buffer pH=8.8. After coating the plates are washed with PBS+0.05% Tween-20 (PBST) and blocked for two hours with PBS+0.05% Tween-20+2% non-fat dry milkpowder (Nestle) (PBSM). The PE extracts are then incubated for 1 hour on the plate and then washed with PBST followed by 1 hour incubation of 0.5 μg/ml mouse anti-HA tag antibody (16B12, Covance) in PBSM. After washing with PBST, 1.5 μg/ml alkaline phosphatase conjugated anti-mouse antibody (Sigma) in PBSM in added to the plate for 1 hour followed by PBST washing. Finally, the ELISA is developed using 2 mg/ml alkaline phosphatise substrate (Sigma) in AP-buffer (100 mM NaCl, 50 mM MgCl2, 100 mM Tris pH=9.5) and the optical density signal at 405 nm is measured.
Expression and Purification of Anti-Human MMR and Anti-Human/Mouse MMR Cross-Reactive Nanobodies
The pMECS-Nb plasmids of the clones that scored positive in ELISA were transformed into E. coli WK6 cells. These cells stop translation at the TAG codon and therefore express the Nbs without a phage protein fusion. Production of recombinant VHH was performed in shaker flasks by growing the bacteria in Terrific Broth supplemented with 0.1% glucose and ampicillin until an absorbance at 600 nm between 0.6 and 0.9 was reached. VHH expression was then induced with 1 mM IPTG for 16 hours at 28° C. After pelleting the cells, the periplasmic proteins were extracted by osmotic shock. This periplasmic extract was loaded on a nickel-nitrilotriacetic acid (Thermo Scientific), and after washing, the bound proteins were eluted in PBS with 500 mM imidazol. The eluted fraction was dialyzed to Vivaspin 2 centrifugal concentrators (Sartorius). The final purity of the protein was checked by SDS-PAGE. The final yield was determined from UV absorption at 280 nm using the calculated theoretical extinction coefficient of the VHH.
Example 1
TS/A Tumors are Highly Infiltrated with a Heterogeneous Population of Myeloid Cells Containing Distinct Granulocyte and Monocyte/Macrophage Subsets
To study the tumor-infiltrating myeloid compartment, we employed the Balb/c mammary adenocarcinoma model TS/A. Subcutaneous tumors contained a large CD11b+ fraction, indicating a high infiltration of myeloid cells (FIG. 1A). Interestingly, this CD11b+population was heterogeneous and encompassed at least 7 subsets, which could be readily distinguished based on their differential expression of MHC class II and Ly6C (FIG. 1A). Ly6ChiMHC II− cells (Gate 1: FIG. 1A) were F4/80+CX3CR1lowCCR2hiCD62L+, did not express the granulocyte markers Ly6G or CCR3 and had a small size and granularity (FSClowSSClow), indicating that they were Ly6Chi monocytes (FIGS. 1A, 1C and FIG. 6). The CD11b+MHC II+ cells in Gates 2-4 were reminiscent of macrophages, having an enlarged macrophage-like scatter and expressing high levels of F4/80 (FIGS. 1A, 1C). Remarkably, distinct subsets of tumor-associated macrophages (TAMs) were clearly distinguishable: Ly6CintMHC IIhi (Ly6Cint TAMs, Gate 2), Ly6ClowMHC IIhi (MHC IIhi TAMs, Gate 3) and Ly6ClowMHC IIlow (MHC IIlow TAMs, Gate 4). The majority of Ly6ClowMHC II− cells were CCR3+CX3CR1− eosinophils (Gate 5: FIG. 1A and Gate E: FIG. 6). However, Ly6ClowMHC II− cells also consisted of CCR3−CX3CR11′ (Gate 2: FIG. 6) and CCR3−CX3CR1hi (Gate 3: FIG. 6) cells, the latter possibly resembling Ly6ClowCX3CR1hi monocytes. However, the majority of these CX3CR1hi cells did not have a monocyte scatter, suggesting they were TAMs (FIG. 6). This suggests that Ly6Clow monocytes were not present in significant amounts in these tumors. Finally, TS/A tumors were also infiltrated with CCR3+Ly6Cint eosinophils (Gate 6: FIG. 1A), and Ly6Ghi neutrophils (Gate 7: FIG. 1A).
Interestingly, the relative percentages of these distinct myeloid subpopulations dramatically changed as tumors progressed (FIG. 1B). Within the TAM compartment, the percentage of Ly6Cint TAMs decreased, while the Ly6ClowMHC IIlow TAM subset became gradually more prominent, reaching up to 60% of the myeloid tumor-infiltrate in large tumors (>10 mm).
Example 2
Ly6Chi Monocytes are the Precursors of all TAM Subsets in TS/A Tumors
Macrophages typically derive from circulating blood-borne precursors such as monocytes. The presence of Ly6Chi, but not Ly6Clow, monocytes in TS/A tumors suggested that the former could be more efficiently recruited to tumors and function as the TAM precursor. To investigate this, we selectively labeled Ly6Chi or Ly6Clow monocyte subsets in vivo with fluorescent latex beads, using a previously described procedure.(11, 12). This method has been validated to stably label the respective monocyte subsets for 5 to 6 days in naïve mice. Hence, TS/A was injected after Ly6Clow or Ly6Chi monocyte labeling and tumors were collected 6 days pi. No appreciable numbers of tumor-infiltrating latex+monocytes were observed when applying the Ly6Clow labeling strategy (FIG. 2A). In contrast, Ly6Chi labeling resulted in the detection of a significant fraction of CD11b+latex+ monocytes, illustrating that Ly6Chi monocytes are the main tumor-infiltrating monocyte subset. With this approach, latex+ cells could be detected up to 19 days post tumor injection (FIG. 2B), allowing a follow-up of the monocyte progeny in the course of tumor growth. At day 6, latex+Ly6Chi monocytes had differentiated into latex+Ly6Cint TAMs, and to some extent also into latex+MHC and latex+MHC IIlow TAMs (FIG. 2B). From day 12 onward, the majority of latex+Ly6Chi monocytes had converted into latex+MHC IIhi and latex+MHC IIlow TAMs. Together, these data demonstrate that all TAM subsets can be derived from Ly6Chi monocytes.
Example 3
Ly6Cint, MHC IIhi and MHC TAMs have Distinct Differentiation Kinetics and Turnover Rates
To determine the turnover rate and differentiation kinetics of the monocyte/TAM subsets, BrdU was administered continuously to tumor-bearing animals and its incorporation was measured at consecutive time points. Tumor-infiltrating Ly6Chi monocytes quickly became BrdU+, reaching plateau values after 48 hours of BrdU administration (FIG. 2D). This indicates a rapid monocyte turnover rate and/or proliferation of monocytes inside tumors. Remarkably, intratumoral Ly6Chi monocytes were Ki67+, suggesting a proliferative potential (FIG. 2C). In contrast, TAMs were non-proliferating (Ki6T) and hence unable to directly incorporate BrdU. Therefore, BrdU+ TAMs must differentiate from BrdU+ monocytes, resulting in a lag phase of BrdU positivity. Indeed, only a minor fraction of MHC IIhi and MHC IIlow TAMs were BrdU+ upon 24 hours BrdU administration (FIG. 2D). However, compared with these subsets, Ly6Cint TAMs incorporated BrdU at a faster rate, with a higher percentage being BrdU+ already at 24 hours. These results suggest that monocytes first give rise to Ly6Cint TAMs, which then differentiate into MHC IIhi and MHC IIlow TAMs. MHC IIhi and MHC IIlow TAMs incorporated BrdU slowly and with similar kinetics, arguing for a comparable and low turnover rate.
Example 4
MHC IIhi and MHC IIlow TAMs Differ at the Molecular Level
Efforts have been made before to characterize TAMs at the molecular level.(13, 14) We characterized the distinct TAM subsets at the gene and protein level. The gene expression of sorted MHC IIhi and MHC IIlow TAMs (FIG. 7A) was analyzed via qRT-PCR (Table 1). Ly6Cint TAMs, constituting only a minor fraction in larger tumors, were not included in this analysis. Interestingly, when comparing MHC IIhi with MHC IIlow TAMs (Table 1 hi/low), M2-associated genes such as Arg1 (Arginase-1), Cd163, Stab1 (Stabilin-1) and Mrc1 (MMR) were higher expressed in the MHC IIlow subset. In contrast, more M1-type, pro-inflammatory genes such as Nos2 (iNOS), Ptgs2 (Cox2), Il1b, Il6 and Il12b were up-regulated in MHC IIhi TAMs. This differential activation state was also reflected at the protein level. Membrane expression of the M2 markers macrophage mannose receptor (MMR), macrophage scavenger receptor 1 (SR-A) and IL-4Rα were clearly higher on MHC IIlow TAMs, while the M1-associated marker CD11c, was only expressed on MHC IIhi TAMs (FIG. 1C). Moreover, while arginase activity was observed in both TAM subsets, it was significantly higher for MHC IIlow TAMs (FIG. 3A). In the same vein, TNFα, which has previously been reported to associate with a M2 phenotype in tumors,(15, 16) was produced by both TAM subsets, but a significantly higher percentage of MHC IIlow TAMs were found to be TNFα+ (FIG. 3B). While iNOS protein was not detected in freshly isolated TAMs, it could be induced by IFN-γ and/or LPS stimulation (FIG. 3C). Interestingly, IFN-γ or LPS induced iNOS more efficiently in MHC IIhi TAMs, with a higher fraction of these cells becoming iNOS+. Together, these data indicate that the identified TAM subsets have a differential activation state, with MHC IIlow TAMs being more M2-oriented.
TAM subsets also showed a markedly distinct chemokine expression pattern (Table 1). Notably, mRNAs for chemokines typically involved in lymphocyte attraction, such as Ccl5, Cx3cl1, Cxcl11, Cxcl10, Cxcl9 and the CCR4 ligands Ccl17 and Ccl22 were up-regulated in MHC IIhi TAMs. In contrast, mRNAs for monocyte/macrophage chemoattractants, such as Ccl6, the CCR2 ligands Ccl7, Ccl2 and Ccl12 and the CCR5/CCR1 ligands Ccl4, Ccl3 and Ccl9 were significantly higher in MHC IIlow TAMs. Furthermore, at the protein level, a differential expression of the chemokine receptors CX3CR1 and CCR2 was observed, with MHC IIhi TAMs being CX3CR1hiCCR2−, while MHC IIlow TAMs were CX3CR1lowCCR2+(FIG. 1C).
Both TAM subsets expressed many potentially pro-angiogenic genes, including Vegfa, Mmp9, Pgf, Spp1 and cathD (Table 1). However, several angiostatic factors such as angpt2, Cxcl9, Cxcl10 and Cxcl11 were up-regulated in the MHC IIhi fraction. One of the most differentially expressed genes (higher in MHC IIlow TAMs) was Lyve1.
We conclude that MHC IIhi and MHC IIlow TAMs have a distinguishing profile of molecules involved in inflammation (M1/M2), chemotaxis and angiogenesis.
Example 5
MHC IIlow TAMs are Enriched in Regions of Hypoxia, while MHC IIhi TAMs are Mainly Normoxic
Tumors often harbor regions of hypoxia, a factor which is known to influence macrophage function.(9) To visualize hypoxia in TS/A tumors, tumor-bearing mice were injected with pimonidazole (Hypoxyprobe-1, HP-1) and tumor sections were stained for hypoxic adducts and blood vessels. FIG. 4A shows that tumors indeed contained a large number of hypoxic cells, primarily in regions with a less developed vasculature. Interestingly, staining sections for HP-1, CD11b and MHC II demonstrated that many CD11b+MHC II− cells (which in large tumors are mainly MHC IIlow TAMs) were HP-1+ (FIG. 4B). Interestingly however, the majority of CD11b+MHC II+ cells were HP-1−. This indicates that while a significant fraction of MHC IIlow TAMs resided in hypoxic areas, MHC IIhi TAMs were mainly normoxic. Importantly, HP-1 adducts could also be detected through intracellular flow cytometry on freshly isolated TAMs. Again, the highest signal was seen in MHC IIlow TAMs, confirming they were the most hypoxic TAM subset (FIG. 4C).
A consequence of MHC IIlow TAMs being in hypoxic regions should be a reduced access to blood-transported molecules. To test this, fluorescent latex particles were injected iv in tumor-bearing mice. 1 to 2 hours later a fraction of tumor-associated CD11b+ cells were found to be latex+ (FIG. 8A). However, latex uptake was not equal in all TAM subsets. Indeed, in relative terms, MHC IIlow TAMs phagocytosed less latex than monocytes and other TAM subsets. This was not due to an inherently reduced phagocytic capacity of MHC IIlow TAMs, since the latter showed the highest phagocytic latex uptake in vitro (FIG. 8B). These data suggest that the reduced in vivo latex uptake of MHC IIlow TAMs was due to a restricted access to latex particles which further substantiates the enrichment of MHC IIlow TAMs in hypoxic regions.
Example 6
MHC IIlow TAMs Show a Superior Pro-Angiogenic Activity In Vivo
Hypoxia initiates an angiogenic program.(17) In addition, our gene profiling revealed the expression of angiogenesis-regulating molecules in TAMs. To directly test the pro-angiogenic activity of both TAM subsets in vivo, we employed the chorioallantoic membrane (CAM) assay. Sorted MHC IIhi or MHC IIlow TAMs were implanted on developing CAMs, while BSA or rhVEGF served as negative and positive controls, respectively. rhVEGF induced the outgrowth of allantoic vessels specifically directed towards the implants (FIG. 5A). Interestingly, compared with BSA controls, the presence of MHC IIhi or MHC IIlow TAMs significantly increased the number of implant-directed vessels, demonstrating a pro-angiogenic activity for both TAM subsets. However, the vessel count for implants containing MHC IIlow TAMs was on average two-fold higher than with MHC IIhi TAMs. These data show that MHC IIlow TAMs had a superior pro-angiogenic activity in vivo.
Example 7
TAMs are Poor Antigen-Presenters, but can Efficiently Suppress T-Cell Proliferation
We wondered whether the TAM subsets were able to process internalized antigens and activate T cells. Both TAM subsets took up and processed DQ-Ovalbumin (DQ-OVA) at 37° C. However, examining DQ-OVA processing at consecutive time points indicated that processing naïve more slowly in the MHC IIlow fraction (FIG. 9). To investigate whether TAMs could directly activate naïve T cells, a mixed leukocyte reaction (MLR) assay was used. Hereto, sorted MHC IIhi or MHC IIlow TAMs were cultured with purified allogeneic C57BL/6 CD4+ or CD8+ T cells. Sorted splenic CD11chiMHC IIhi conventional DCs (cDCs) (FIG. 7B) were used as a reference T-cell-stimulating population.(18) Compared with cDCs, MHC IIhi or MHC IIlow TAMs induced poor proliferation of allogeneic CD4+ or CD8+ T cells (FIG. 5B), suggesting a limited antigen-presenting capacity or, alternatively, a T-cell suppressive capacity that overrules antigen-presentation.
To investigate the latter possibility, T cells were polyclonally activated in the presence of TAMs or cDCs. Interestingly, as opposed to cDCs, both MHC IIhi and MHC IIlow TAMs equally suppressed anti-CD3-induced T-cell proliferation in a dose-dependent manner (FIG. 5C). In an attempt to identify the suppressive molecules responsible for TAM-mediated suppression, inhibitors of iNOS (L-NMMA) and arginase (N or Noha) were added to the co-cultures (FIG. 5D). Blocking iNOS significantly reduced T-cell suppression by MHC IIhi TAMs, demonstrating a role for nitric oxide in its suppressive mechanism. In contrast, iNOS inhibition only had a minor effect on the suppressive potential of MHC IIlow TAMs, showing that both subsets employ different T-cell suppressive mechanisms.
Example 8
Similar TAM Subsets in Other Tumor Models
Interestingly, the TAM subsets identified in TS/A tumors, were also present in other tumor models. Both in the Lewis Lung Carcinoma (LLC) model and in the mammary carcinoma model 4T1, MHC IIhi and MHC IIlow TAMs could be identified (FIG. 13A). Furthermore, as in TS/A, typical M2 markers such as MMR and IL4Rα were higher expressed on MHC IIlow TAMs, while M1 markers such as CD11c were higher on MHC IIhi TAMs (FIG. 13B). This indicates that our initial findings in TS/A are not restricted to a single tumor model or even to a single carcinoma type (mammary vs. lung carcinoma). The dynamics of TAM subsets in the LLC model resembled that of TS/A, with MHC IIlow TAMs accumulating over time and forming the majority of myeloid cells in established tumors (FIG. 13C, LLC). However, 4T1 tumors did not adhere to this trend and instead MHC IIhi TAMs accumulated as tumors progressed (FIG. 13C, 4T1). These data indicate that the accumulation of TAM subsets over time can vary from one tumor type to another, which possibly reflects differences in tumor architecture. Therefore, these findings provide a rationale for classifying tumors based on the relative percentage of TAM subsets (with tumor volume taken into account). This might be useful for devising a tailored therapy and/or as a prognostic factor.
Example 9
Nanobodies Against the Macrophage Mannose Receptor (CD206-MMR)
As outlined in the Examples above, TAMs can adopt different phenotypes and functional specializations. For example, TAMs located in hypoxic tumor regions were found to be extremely pro-angiogenic, suggesting that they play an important role in tumor vascularization. Interestingly, we have identified CD206 (macrophage mannose receptor) as a membrane marker which is specifically expressed on this tumor-promoting TAM subset. Anti-CD206 (anti-MMR) nanobodies, which are the smallest available antigen-binding entities, were created (see also Example 14) in order to target these cells in vivo. It was shown that the newly created anti-CD206 Nbs bind strongly to TAMs, but not to other myeloid cell types such as monocytes and granulocytes or any other tumor resident cells. These and other nanobodies against any of the markers of Table 1 are used for non-invasive imaging of TAMs using SPECT/Micro-CT. These nanobodies are also used to create immunotoxins for the therapeutical targeting of these cells in pre-clinical tumor models or for antibody-directed enzyme prodrug therapies (ADEPT).
Example 10
In Vivo Imaging Using Macrophage Mannose Receptor Nanobodies
In a next step, we performed in vivo imaging using Macrophage Mannose Receptor (MMR) targeting nanobodies. The nanobodies were labeled at their hexahistidine-tail with 99mTc at elevated temperatures by tricarbonyl-chemistry. Purified, 99mTc-labeled Nanobodies were injected intravenously in mice and total body scans were made using pinhole SPECT and micro-CT.
The first step in the in vivo evaluation was the study of the biodistribution in healthy mice. This allows to evaluate physiological sites of specific accumulation and to determine the pharmacokinetic properties of the imaging probes. MMR nanobodies show uptake in organs such as lungs, spleen and liver. The blood clearance is fast with less than 1% IA (injected activity)/ml remaining in blood at 1 hour 30 minutes post injection. We also tested MMR nanobodies in MMR knock-out mice where the uptake in liver and spleen dropped below 1% IA/g (FIG. 11). These data indicate that the accumulation in organs such as liver and spleen is related to MMR expression and therefore specific. Only the accumulation in lungs appears to be MMR-unrelated.
Next, 99mTc-labeled MMR Nanobodies and a control Nanobody recognizing a target not present in mice (the cAbBcII10 nanobody, raised against subunit 10 of the β-lactamase BcII enzyme of Bacillus cereus) were inoculated in TS/A tumor-bearing mice. Uptake of the MMR Nanobody in liver, spleen, lungs, kidneys and blood was similar as before (FIG. 12), whereas accumulation of the control Nanobody was below 1% IA/g for all organs except for lungs and kidneys. Interestingly, the MMR Nanobody showed significant accumulation in the subcutaneous TS/A tumor (>2.5% IA/g), whereas the uptake of the control Nanobody in the subcutaneous tumor had dropped below 0.5% IA/g at 1h30 post injection.
Example 11
TAM Targeting Using Anti-CD206 Nb-Toxins
Anti-CD206 Nbs are covalently linked to a protein toxin for TAM cell killing. Candidate toxins are the diphtheria toxin or the Pseudomonas exotoxin. It is investigated whether Nb-toxin conjugates are able to induce TAM cell death both in vitro and in vivo. Next, the effect of Nb-toxin treatment on tumor growth is assessed. For this, different injection schemes and doses are evaluated, ideally obtaining tumor regression coupled to a low overall toxicity. Further, it is investigated whether in vivo TAM depletion results in reduced tumor angiogenesis. This is done by immunohistochemically counting the number of blood vessels in tumors of Nb-toxin treated or untreated mice.
Alternatively, TAM killing might alleviate immune suppression or induce an inflammatory environment favoring the development of anti-tumor immunity. Thereto, it is investigated whether Nb-toxin treatment expands tumor-infiltrating T cells (TILs). The activation of TILs is assessed by evaluating the expression of certain membrane markers and through intracellular measurement of cytokine production. CD8+ cytotoxic TILs are purified and their tumor killing potential is directly assessed in vitro. The impact of anti-tumor immunity is also evaluated by repeating the Nb-toxin treatment in Rag2−/− or SCID mice, which do not have functional T or B cells.
Example 12
Targeting Tumors Using an Anti-CD206 Nb-Enzyme/Prodrug Strategy
The observation that CD206 is expressed on TAMs from several independent tumor models, makes it a potential tumor-targeting marker for a variety of different cancers. CD206 is therefore an interesting candidate for developing antibody-directed enzyme prodrug therapies (ADEPT). In ADEPT an antibody is coupled to an enzyme which is able to convert a prodrug into a cytotoxic drug. We have previously proven that this also works with the Nb format.(25) Anti-CD206 Nbs can, for example, be coupled to β-lactamase, an enzyme which is able to release phenylenediamine mustard from the prodrug 7-(4-carboxybutanamido) cephalosporin mustard. Anti-CD206 Nb-enzyme conjugates can be injected in tumor-bearing mice, subsequently allowing clearance of unbound Nbs after which the prodrug is administered. This will result in a high toxicity at the tumor site, killing TAMs but also other bystander tumor cells, while having a low overall toxicity in the animal. We evaluate the efficacy of anti-CD206 Nb enzyme-prodrug therapies for inducing tumor regression in our preclinical tumor models.
Example 13
MMR as a Marker for the Differential Targeting of Tam Subsets In Vivo
In the above Examples, it was shown that in tumor single cell suspensions, MMR was differentially expressed between MHC IIhi and MHC IIlow TAMs, as assessed by flow cytometry using anti-MMR monoclonal antibodies. In addition, MMR was not/poorly expressed on CD11b− cells, granulocytes, monocytes and Ly6Cint TAMs in the TS/A mouse mammary carcinoma model (FIG. 14). We next set out to investigate MMR expression patterns in tumor sections. TS/A mammary carcinoma sections were triple-stained for MMR (red), CD11b (blue) and MHC II (green) (FIG. 15). MMR and CD11b staining almost completely co-localized, showing that MMR cells were indeed TAMs. Interestingly however, MMR expression poorly co-localized with CD11b+MHC II+ cells (the majority corresponding to MHC IIhi TAMs), indicating that MMR staining was mainly restricted to MHC IIlow TAMs. Therefore, MMR can be used for differentially targetting MHC IIhi and MHC IIlow TAMs on tumor sections. Together with our flow cytometric results this indicates that MMR can be an interesting marker for specifically targeting MHC IIlow TAMs in vivo.
Example 14
Generation of Anti-MMR Monovalent and Bivalent Nanobodies
Nanobodies (Nb) were raised against the recombinant extracellular portion of MMR (α-MMR Nb), as described in the Materials and Methods (see also Example 9; Table 4). The binding characteristics of the monovalent anti-MMR nanobodies were compared using surface Plasmon resonance measurements (Table 5). Nanobody clone 1 demonstrated an eight-fold higher apparent affinity for immobilized recombinant MMR compared to nanobody clone 3 (KD=2.31×10−8 M versus 1.91×10−7 M, respectively), and became hence the nanobody of choice for the remaining of this study. In addition, SPR competition studies demonstrated that pretreatment with nanobody clone 1 does not preclude nanobody clone 3 binding, and vice versa, suggesting that anti-MMR Nb clone 1 and Nb clone 3 bind to non-overlapping epitopes (data not shown). Further, bivalent nanobodies were constructed by linking two anti-MMR nanobody 1 entities using (G4S)3 (GGGGSGGGGSGGGGS; SEQ ID NO:121), llama IgG2 hinge (AHHSEDPSSKAPKAPMA; SEQ ID NO:122) or human IgA hinge (SPSTPPTPSPSTPPAS SEQ ID NO:123) linkers. These bivalent anti-MMR molecules showed a five-fold higher avidity compared to the monovalent clone 1 nanobody, which can be attributed largely to three-fold increase in KD. The different linkers used for bivalent nanobody construction did not seem to have a significant effect on the affinity of the molecules for the MMR antigen. As a negative control nanobody in all experiments, we consistently used α-BCII10 Nb, which is a binder of the β-lactamase BCII enzyme of Bacillus cereus. 
Example 15
Ex Vivo Characterization of Anti-MMR Nanobodies
To investigate whether the anti-MMR Nb could bind to TAMs ex vivo, single cell suspensions were made of subcutaneous TS/A tumors and flow cytometric analyses were performed (FIG. 16). The anti-MMR Nb bound to a subset of CD11b+ cells, but not to CD11b− cells (FIG. 16A). Within the CD11b+ fraction, anti-MMR Nb did not bind to monocytes (FIG. 16B, gate 1), granulocytes (Gate 5) and only very weakly to Ly6Cint TAMs (gate 2). Staining was therefore restricted to MHC IIhi (gate 3) and MHC IIlow TAMs (gate 4), with the latter subset binding anti-MMR Nb to a much greater extent. These results are therefore in line with our previous observations using anti-MMR monoclonal antibodies. We conclude that in ex vivo tumor suspensions, the anti-MMR Nb stained mature TAMs and more intensely the MHC IIlow subset.
Example 16
Assessment of the Biodistribution and Specificity of Anti-MMR Nanobody Clone 1 and its Bivalent Derivative in Naive Mice Using Pinhole SPECT/Micro-CT Analysis
Next, we wished to assess whether the anti-MMR Nb clone 1 could be used for targeting and imaging of MMR-expressing cells in vivo. In first instance, this was investigated in naive mice. To this end, anti-MMR monovalent Nb were labeled with 99mTc and injected intravenously in naive C57BL/6 mice. Three hours post injection, total-body scans were acquired using pinhole SPECT and micro-CT (FIG. 17), images were quantified and tracer uptake expressed as percentage injected activity per gram cubic centimeter (% IA/cm3) (Table 6). To ascertain the specificity of the anti-MMR Nb and to prove that any potential targeting was not due to aspecific retention, anti-MMR Nb were also injected in naive C57BL/6 MMR−/− mice. In MMR−/− mice, SPECT/micro-CT images show a high tracer uptake in the kidneys and urinary activity in the bladder, indicative of renal clearance, but only low background-level retention is seen in other organs (FIG. 17, Table 6). The only exception were the lungs, suggesting that lung-targeting was aspecific. In contrast, WT mice showed an increased retention of the anti-MMR Nb in several organs, including heart, bone, spleen and liver, with the latter two showing the most intense signals (FIG. 17). These results indicate that the anti-MMR monovalent Nb has a high in vivo specificity and can efficiently target organs such as the liver and spleen. A similar experiment was performed with the different bivalent anti-MMR Nb constructs, all of which showing an even increased uptake in the liver as compared to the monovalent molecule and a concomitant reduction in clearance via the kidneys (Table 7). Again, retention of bivalent anti-MMR Nb in all organs, except the lung, is MMR-specific and is absent in MMR−/− mice. As was expected, retention of the control cAbBCII10 Nb is very low in all organs, resulting in a massive clearance via the kidneys (Table 7).
Example 17
Tumor-Targeting Potential and Specificity of Anti-MMR Nanobodies
Next, we set out to investigate whether the anti-MMR Nb could be used to target TAMs in vivo. Hereto, 99mTc-labeled anti-MMR Nbs were injected intravenously in TS/A (Balb/c) and 3LL-R (C57BL/6) tumor-bearing mice and SPECT/micro-CT and ex vivo dissection analyses were performed. 99mTc-labeled cAbBCII10 Nbs were used as negative controls. In addition, to further ascertain the specificity of tumor uptake, 3LL-R tumors were also grown in C57BL/6 MMR−/− mice. In these mice, 3LL-R tumors grew progressively and the distinct TAM subsets remained present as assessed by flow cytometry (data not shown). Interestingly, as observed by SPECT/micro-CT imaging, both TS/A and 3LL-R tumors showed a clear uptake of anti-MMR Nb, which was significantly higher than tumor uptake of cAbBCII10 Nb (FIGS. 18 and 19). These findings were confirmed through ex vivo dissection analysis, where the activity in the tumor and organs was assessed and expressed as injected activity per gram (% IA/g): TS/A tumor uptake was 3.02±0.10% IA/g for anti-MMR Nb and 0.40±0.03% IA/g for cAbBCII10 (Table 8); 3LL-R tumor uptake was 3.02±0.19% IA/g for anti-MMR Nb and 0.74±0.03% IA/g for cAbBCII10 (Table 9). Importantly, in 3LL-R tumor-bearing MMR−/− mice, tumor uptake of anti-MMR Nb was reduced by ten-fold (0.33±0.03% IA/g, Table 9), showing that targeting in WT mice was receptor-specific.
Example 18
Blocking of Extratumoral Binding Sites by Excess Monovalent or Bivalent Anti-MMR Nb
Both in the TS/A and 3LL-R model, 99mTc-labeled anti-MMR Nb accumulates to a higher extent in liver and spleen than in the tumor. Therefore, we sought for ways to minimize binding of labeled tracer in these extratumoral sites, while preserving tumor targeting. In first instance, we co-injected an eighty-fold excess of cold unlabeled anti-MMR Nb and subsequently evaluated the biodistribution of 99mTc-labeled anti-MMR Nb. This strategy results in a strongly reduced accumulation of labeled Nb in all organs, except for the tumor, resulting in a similar level of specific uptake in tumor and liver (FIG. 20). Next, we hypothesized that the inherently enhanced biodistribution of bivalent anti-MMR Nb to the liver and its enhanced in vivo retention (lower clearance via the kidneys) could be exploited to block the extratumoral binding sites more efficiently. To this end, we co-injected 99mTc-labelled anti-MMR Nb with a twenty-fold excess of cold bivalent anti-MMR and assessed the specific uptake of labeled Nb in distinct organs. Remarkably, while the retention of monovalent anti-MMR in all organs is reduced to the aspecific background level seen with the control Nb cAbBCII10, the uptake in tumors is only slightly diminished (FIG. 21). As a result, the specific uptake of labeled anti-MMR Nb is highest in the tumor.
Example 19
The Relative Abundance of TAM Subsets Correlates with Tumor Aggressiveness
To assess whether the relative abundance of TAM subsets correlates with tumor aggressiveness, we injected high and low malignant 3LL lung carcinoma variants and evaluated the TAM subset distribution in the corresponding tumors. 3LL-R lung carcinoma cells establish rapidly growing tumors upon subcutaneous inoculation, reaching a tumor volume of about 1000 mm3 within 12 days (FIG. 22). In these tumors, the MHC IIhigh TAM subpopulation, which is located in normoxic regions, is outnumbered by the MHC IIlow subset (FIGS. 22 and 23). In contrast, 3LL-S tumors grow much slower (1000 mm3 within about 35 days) and are dominated by the MHC IIhigh TAM subset (FIG. 22). A similar observation is made when comparing fast growing T241 fibrosarcoma tumors with slow growing T241-HRG tumors (data not shown). Together, these data indicate that the relative abundance of TAM subsets can be prognostic for tumor aggressiveness.
Example 20
Evaluation of the Anti-MMR-PE38 Immunotoxin
The anti-MMR Nb clone 1 was fused to the Pseudomonas exotoxin A as described in Materials and Methods, creating an MMR-specific immunotoxin. It was shown that the recombinant production of this immunotoxin results in a functional toxic moiety, with the ability to kill cancer (3LL-R, 3LL-S) and macrophage cell lines (J774) in vitro (data not shown). In vivo administration of the toxin does not result in lethality, even at the highest dose used (data not shown). Further, the ability of the immunotoxin to specifically eliminate MMR-positive cells in vivo is assessed, in particular MMR+MHC IIlow TAM in tumors, and the consequences of TAM subset elimination for tumor characteristics (growth, metastasis, vessel density, vessel functionality, . . . ) is evaluated.
Example 21
α-MMR Nb Clone 1 Targets Hypoxic Tumor-Associated Macrophages In Vivo
Having established that α-MMR Nb c11 specifically targeted MMR cells in tumors, we wished to ascertain whether this was due to TAM targeting. Previous work showed that CCR2-deficiency can result in a significant decrease in TAM infiltration with only a minimal effect on tumor growth, resulting from the compensatory influx of tumor-promoting neutrophils.(45, 46) To investigate whether CCR2-deficiency affected the numbers of TAMs and in particular MHC IIlow TAMs in our model, flow cytometric analyses were performed on single-cell suspensions of equally sized s.c. 3LL-R tumors grown in WT or CCR2-KO mice. This showed that CCR2-deficiency led to a dramatic reduction in the number of MHC IIlow TAMs, while infiltration of Ly6G+MMR− neutrophils was significantly increased (FIG. 24A). Next, we compared the tumor-uptake of 99mTc-labeled α-MMR Nb c11 injected in WT vs CCR2-KO 3LL-R tumor-bearing mice. 99mTc-labeled α-MMR Nb showed a similar biodistribution in the organs/tissues of CCR2-KO vs WT tumor-bearers (Table 10). Importantly however, uptake of 99mTc-labeled α-MMR Nb was significantly reduced in CCR2-KO tumors: 2.97±0.22% IA/g in WT vs 1.83±0.1% IA/g in CCR2-KO tumors (FIG. 3B). This indicates that TAMs residing in solid tumors are indeed targets of α-MMR Nbs in vivo.
Since MHC IIlow MMR+ TAM were shown to associate with hypoxic regions, we next assessed whether α-MMR Nbs preferentially label hypoxic TAM in vivo. Hereto, AF647-coupled α-MMR Nbs were injected i.v. in s.c. 3LL-R WT or MMR-KO tumor-bearing mice. Two hours later, tumors were collected, sectioned and stained for the hypoxia marker pimonidazole (hypoxyprobe) and the macrophage marker F4/80. Interestingly, AF647 fluorescence almost completely co-localized with F4/80 staining in WT tumors, but was absent from MMR-KO tumors (FIG. 24C). In addition, the majority of AF647(bright) cells were located in hypoxic areas and stained with pimonidazole (FIGS. 24C and 24D). These results convincingly show that α-MMR Nbs can target hypoxic tumor regions in vivo, where they bind to the residing MMR macrophages.
Example 22
Strategies for Increasing the Tumor-to-Tissue Ratio of 99mTc-Labeled α-MMR Nb c11
A methodology for the specific in vivo targeting of a tracer to TAMs, but not to other sites in the body, could be of important diagnostic and therapeutic significance. However, both in the TS/A and 3LL-R model, 99mTc-labeled anti-MMR Nb accumulates to a higher extent in liver and spleen as compared to tumor. Therefore, we aimed to minimize binding of labeled tracer in these extratumoral sites, while preserving tumor targeting. The efficient tumor targeting potential of nanobodies is thought to be a direct result of their small size. To investigate this, a series of larger bivalent Nbs were created (FIG. 25A). First, αMMR-αMMR bivalent Nbs were made by cloning three different peptide linkers with increasing proline content (glycineserine linker, part of the llama IgG2c hinge or part of the human IgA hinge) between two Nb c11 sequences (as described in Example 14). All these bivalent Nbs showed a five-fold higher avidity compared to the monovalent Nb c11, which can be largely attributed to a three-fold increase in KD (Table 5) and displayed a very similar in vivo biodistribution (Table 7). In addition, using the llama IgG2c linker, αMMR-BCII10 bispecific Nbs and BCII10-BCII10 bivalent Nbs were generated and their in vivo biodistribution was evaluated in TS/A and 3LL-R tumor-bearing mice. Interestingly, αMMR-BCII10 and especially αMMR-αMMR Nbs showed a significantly enhanced targeting of liver and spleen, but a dramatically reduced targeting of tumor, as compared to monovalent α-MMR Nbs (FIG. 25B). Hence, these bivalent Nbs seem to possess desirable features to efficiently block extratumoral binding sites while preserving intratumoral binding sites. To test this, we co-injected 99mTc-labeled monovalent α-MMR Nb with a twenty-fold molar excess of unlabeled bivalent αMMR-αMMR Nb and assessed the specific uptake of labeled Nb in distinct organs. While the retention of monovalent 99mTc-labeled α-MMR Nb is reduced in all organs to the aspecific background level seen with Nb BCII10, the uptake in tumors is only slightly diminished (FIG. 25C). As a result, the tumor-to-tissue ratio of labeled α-MMR Nb is dramatically increased and tracer uptake is highest in the tumor. This allowed the tumor to be clearly distinguishable in SPECT/micro-CT imaging of mice bearing subcutaneous tumors (FIGS. 26A and 26B). Importantly, very similar imaging data were obtained when TS/A tumors were grown orthotopically in the mammary fat pad (FIGS. 5C and 5D), for which the presence of the two main TAM subsets as described above (Example X). Finally, imaging studies were performed in transgenic MMTV-PyMT mice, which spontaneously develop mammary tumors.(33) Hereto, a mouse bearing multiple macroscopic tumors was consecutively imaged (48-hour intervals to allow complete elimination and decay of the 99mTc tracer) with either 99mTc-labeled α-MMR Nb, 99mTc-labeled BCII10 Nb or 99mTclabeled α-MMR Nb co-injected with unlabeled bivalent αMMR-αMMR Nb. When 99mTclabeled α-MMR Nb was injected alone, tumors were not easily distinguishable due to high extratumoral uptake (FIG. 27A). However, co-injecting unlabeled bivalent αMMR-αMMR Nb minimalized extratumoral Nb retention and resulted in tracer uptake in the most prominent macroscopic nodules as seen via high-resolution 3D CT reconstructions (FIG. 27B). Notably, FACS analysis showed that for all three selected tumors highlighted in FIG. 6B, distinct TAM subpopulations were present, whereby MMR expression was highest on the MHC IIlow TAMs (FIG. 27C).
Example 23
Effect of Mono- and Bivalent α-MMR Nb c11 on Immune Cell Activation
Monoclonal anti-MMR antibodies are known to potentially activate macrophages and DCs.(47) To assess whether mono- or bivalent α-MMR Nb c11 elicits a response, Nbs were added in varying concentrations to bone-marrow derived DCs (BMDCs) or macrophages (BMDMs) in vitro or were injected at a high dose in vivo. Monovalent α-MMR Nbs did not alter cytokine/chemokine production by BMDCs nor BMDMs in vitro, with or without LPS stimulation (data not shown). With the highest concentration of bivalent Nb (40 μg/ml) we observed a small, but significant, increase in TNF production by DCs and TNF and IL1Ra production by macrophages in vitro. Importantly however, the highest in vivo dose of Nb used in this study (5 μg monovalent Nb+200 μg bivalent Nb) did not induce any significant increase in the serum cytokine levels, both for naive and tumor-bearing mice (FIG. 28). Overall, we conclude that anti-MMR Nbs are innovative tools for the targeting and imaging of hypoxic MMR+ TAMs without the risk of inducing overt innate immune responses in vivo.
Example 24
Relevance of MMR as a Marker for Tumor-Promoting Tams in Human Tumors
In order to test the relevancy of MMR as a marker for tumor-promoting TAMs in human tumors, we assessed MMR and CD68 (as human macrophage marker) expression in paraffin-embedded sections of human breast cancer samples (VUB-UZ Brussel). Using immunohistochemistry on consecutive slides of the same specimen and one double staining on a single slide, we could demonstrate the presence of CD68 positive macrophages in both tumor and fibrotic foci within the tumor region. Immunostaining for MMR clearly shows that the macrophages found in fibrotic foci do co-express MMR (data not shown). Since fibrotic foci within the tumor region is known to be a marker of hypoxia and worse prognosis,(48) the presence of MMR+ macrophages could function as an indicator of severe hypoxia in human tumors as well, similar to what we show for mouse tumors.
In summary, these studies shows that in human breast cancer samples, MMR+ TAMS are clearly detected and are enriched in fibrotic foci which are known to be a marker for intratumoral hypoxia and correlate with a poor prognosis.
Example 25
Selection of Anti-Human MMR Nbs
Next, anti-human MMR nanobodies were generated (see also Material and Method section). After four panning rounds of an anti human/anti mouse MMR phage bank on human MMR, up to 100-fold enrichments for hMMR reactive phages were observed per panning round. Therefore, 188 colonies from all rounds were selected for PE-expression. These PE-extracts were used in PE-ELISAs to determine which clones react effectively to hMMR. In total 100 clones were selected based on these results (FIG. 29). Additionally, the DNA and protein sequence of the selected clones was determined (Table 11) and double clones or premature stopping clones were discarded.
Example 26
Selection of Anti-Human/Mouse MMR Cross-Reactive Nbs
Next, anti-human/mouse MMR cross-reactive nanobodies were generated (see also Material and Method section). The anti human/anti mouse MMR phage bank was alternatingly screened on human and mouse MMR for a total of four rounds, resulting in up to 100-fold enrichments for hMMR/mMMR reactive phages from the second panning round. Therefore, 188 colonies from the second and third rounds were selected for PE-expression. These PE-extracts were used in PE-ELISAs to determine which clones react effectively to MMR, clones were selected after the ELISA on hMMR (FIG. 30). These clones were then screened for binding on mouse MMR (FIG. 31). Only clones(42) that reacted to both antigens were withheld as true cross-reactive Nbs. These clones were sequenced (Table 12) and divided into families based on their CDR3 regions.
Example 27
Production of Representative Set of Anti-Human or Anti-Human/Mouse MMR Nbs
A set of representative clones was selected for Nb production in E. Coli: (1) anti-human Nbs: NbhMMRm1.33, NbhMMRm10.19, NbhMMRm23.30, NbhMMRm2.15, NbhMMRm3.1, NbhMMRm5.38, NbhMMRm12.6, NbhMMRm11.5, NbhMMRm15.43, NbhMMRm16.95; (2) anti-human/mouse Nbs: NbhmMMRm14.4, NbhmMMRm6.71, NbhmMMRm24.31, NbhmMMRm20.52, NbhmMMRm3.49, NbhmMMRm22.84, NbhmMMRm19.52, NbhMMRm21.22, NbhmMMRm14.93, NbhmMMRm15.49, NbhmMMRm17.72, NbhmMMRm10.79, NbhmMMRm7.67, NbhMMRm4.83 Each clone was grown in a two-liter culture. After expression and osmotic shock, the resulting extract was purified on 1 ml of Ni-NTA resin. The resulting 5 ml of eluted Nb was dialyzed to PBS after which the concentration was determined using a Nanodrop device and purity was assessed on Coomassie stained SDS-PAGE gels. The nanobodies all produced between 0.7 and 9 mg Nb/1 E. coli culture (Table 13).







TABLE 1





Gene expression profile of MHC IIhi versus MHC IIlow TAMs
































Protein
Gene
GeneID





Table 1 Legend





D7Rik132 (S12)
MGI: 1338854


FIG. 1




CD11b
Itgam (Cd11b)
MGI: 96607


Ly6C
Ly6c1 (Ly6c)
MGI: 96882


Ly6G
Ly6g
MGI: 109440


CX3CR1
Cx3cr1
MGI: 1333815


F4/80
Emr1
MGI: 106912


CD62L
Sell (Cd62l)
MGI: 98279


CD49d
Itga4 (Cd49d)
MGI: 96603


CD162
Selplg (Cd162)
MGI: 106689


CD11c
Itgax (Cd11c)
MGI: 96609


CD43
Spn (Cd43)
MGI: 98384


SR-A
Msr1
MGI: 98257


IL4-Rα
Il4ra
MGI: 105367


CD80
Cd80
MGI: 101775


CD86
Cd86
MGI: 101773


PD-L1
Cd274
MGI: 1926446


PD-L2
Pdcd1lg2
MGI: 1930125


FIG. 3




Arginase
Arg1
MGI: 88070


FIG. 5




CD4
Cd4
MGI: 88335


CD8
Cd8a
MGI: 88346








TAM subsets were sorted from 3 weeks tumor-bearing mice and their gene expression was assessed using qRT-PCR. The expression of each gene was normalized based on the S12 gene and is shown as the relative expression in MHC IIhi vs. MHC IIlow TAMs (hi/low). Values are the geometric means of three to four independent experiments and are color-coded according to the level of induction. Accompanying 90% confidence intervals and p-values are shown.


*p < 0.05;


**p < 0.01;


***p < 0.001.


CT represents the threshold cycle.


The ΔCT was calculated for MHC IIhi TAMs and is defined as (CT(gene) − CT(S12)); values represent mean ± SEM.


Lower ΔCt corresponds to higher expression levels.













TABLE 2







List of commercial antibodies











Markers
Clone
Manufacturer







CD11b PE-Cy7
M1/70
BD Bioscience



Ly6C
ER-MP20
Serotec



AF647/AF488



Ly6G PE/FITC
1A8
BD Bioscience



IA/IE PE/FITC
M5/114.15.2
BD Bioscience



IA/IE PercpCy5.5
M5/114.15.2
Serotec



IA/IE FITC
M5/114.15.2
eBioscience



F4/80 PE/FITC
CI:A3-1
Serotec



CCR3 FITC
83101
R&D Systems



CD62L PE
SK11
BD Bioscience



CD11c PE
HL3
BD Bioscience



CD43 PE
S7
BD Bioscience



CD49d PE
9C10(MFR4.
BD Bioscience




B)



CD162 PE
2PH1
BD Bioscience



MMR PE/FITC
MR5D3
Serotec



SR-A PE
2F8
Serotec



IL4Rα
mIL4RM1
BD Bioscience



Tie-2 PE
TEK4
eBioscience



CD80 FITC
16-10A1
BD Bioscience



CD86 FITC
GL-1
BD Bioscience



PD-L1/PE
MIH5
eBioscience



PD-L2/PE
TY25
eBioscience



anti-TNFα/APC
MP6-XT22
BD Bioscience



Rabbit anti-iNOS
(M19)
Santa Cruz



anti-Rabbit/APC
polyclonal
Invitrogen

















TABLE 3







List of gene specific primers









GENE
FORWARD PRIMER
REVERSE PRIMER





CCL17
CCCATGAAGACCTTCACCTC
CATCCCTGGAACACTCCACT



(SEQ ID NO: 9)
(SEQ ID NO: 10)


 


CX3CL1
ACTCCTTGATTGGTGGAAGC
CAAAATGGCACAGACATTGG



(SEQ ID NO: 11)
(SEQ ID NO: 12)


 


CXCL11
TCCTTTCCCCAAATATCACG
CAGCCATCCCTACCATTCAT



(SEQ ID NO: 13)
(SEQ ID NO: 14)


 


CCL5
GTGCCCACGTCAAGGAGTAT
AGCAAGCAATGACAGGGAAG



(SEQ ID NO: 15)
(SEQ ID NO: 16)


 


IL6
GTCTTCTGGAGTACCATAGC
GTCAGATACCTGACAACAGG



(SEQ ID NO: 17)
(SEQ ID NO: 18)


 


CXCL10
TCTGAGTCCTCGCTCAAGTG
CCTTGGGAAGATGGTGGTTA



(SEQ ID NO: 19)
(SEQ ID NO: 20)


 


CXCL9
TCAACAAAAGAGCTGCCAAA
GCAGAGGCCAGAAGAGAGAA



(SEQ ID NO: 21)
(SEQ ID NO: 22)


 


IL12B
GAAAGACCCTGACCATCACT
CCTTCTCTGCAGACAGAGAC



(SEQ ID NO: 23)
(SEQ ID NO: 24)


 


IL1B
GTGTGGATCCAAAGCAATAC
GTCTGCTCATTCATGACAAG



(SEQ ID NO: 25)
(SEQ ID NO: 26)


 


PGF
GCACTGTGTGCCGATAAAGA
TACCTCCGGGAAATGACATC



(SEQ ID NO: 27)
(SEQ ID NO: 28)


 


MMP9
TGAATCAGCTGGCTTTTGTG
GTGGATAGCTCGGTGGTGTT



(SEQ ID NO: 29)
(SEQ ID NO: 30)


 


PTGS2
CAGGCTGAACTTCGAAACAG
CAGCTACGAAAACCCAATCA


(COX2)
(SEQ ID NO: 31)
(SEQ ID NO: 32)


 


NOS2
GCTTCTGGTCGATGTCATGAG
TCCACCAGGAGATGTTGAAC



(SEQ ID NO: 33)
(SEQ ID NO: 34)


 


ANGPT2
GCATGTGGTCCTTCCAACTT
GATCCTCAGCCACAACCTTC



(SEQ ID NO: 35)
(SEQ ID NO: 36)


 


CCL22
TGACTTGGGTCCTTGTCCTC
AAGGAAGCCACCAATGACAC



(SEQ ID NO: 37)
(SEQ ID NO: 38)


 


TEK (TIE2)
ACTTCGCAGGAGAACTGGAG
AAGAAGCTGTTGGGAGGACA



(SEQ ID NO: 39)
(SEQ ID NO: 40)


 


VEGFA
CAGGCTGCTGTAACGATGAA
AATGCTTTCTCCGCTCTGAA



(SEQ ID NO: 41)
(SEQ ID NO: 42)


 


THBS2
GAAAGCATACCTGGCTGGAC
ACAAAAGAGCCGTACCTGGA


(TSP2)
(SEQ ID NO: 43)
(SEQ ID NO: 44)


 


IL1A
TTTCAAAAGGAAGGGGACAA
CCACCTAGAAAACCCTGCTG



(SEQ ID NO: 45)
(SEQ ID NO: 46)


 


IL10
ACTCAATACACACTGCAGGTG
GGACTTTAAGGGTTACTTGG



(SEQ ID NO: 47)
(SEQ ID NO: 48)


 


CXCL16
GTCTCCTGCCTCCACTTTCT
CTAAGGGCAGAGGGGCTATT



(SEQ ID NO: 49)
(SEQ ID NO: 50)


 


TNF
CCTTCACAGAGCAATGACTC
GTCTACTCCCAGGTTCTCTTC



(SEQ ID NO: 51)
(SEQ ID NO: 52)


 


THBS1
CGTTGCCATTGGAATAGAGA
TGGCAAAGAGTCAAAACTGG


(TSP1)
(SEQ ID NO: 53)
(SEQ ID NO: 54)


 


CX3CR1
CACCATTAGTCTGGGCGTCT
GATGCGGAAGTAGCAAAAGC



(SEQ ID NO: 55)
(SEQ ID NO: 56)


 


MIF
CTTTTAGCGGCACGAACGAT
AAGAACAGCGGTGCAGGTAA



(SEQ ID NO: 57)
(SEQ ID NO: 58)


 


IGF1
TGACATGCCCAAGACTCAGA
AGGTTGCTCAAGCAGCAAAG



(SEQ ID NO: 59)
(SEQ ID NO: 60)


 


MMP14
CCGGTACTACTGCTGCTCCT
CACACACCGAGCTGTGAGAT



(SEQ ID NO: 61)
(SEQ ID NO: 62)


 


CCR2
CTCAGTTCATCCACGGCATA
CAAGGCTCACCATCATCGTA



(SEQ ID NO: 63)
(SEQ ID NO: 64)


 


PLAU
TCTCCTGGGCAAGTGTAGGA
GCCTGTGCAGAGTGAACAAA


(UPA)
(SEQ ID NO: 65)
(SEQ ID NO: 66)


 


CCL11
CTCCACAGCGCTTCTATTCC
CTTCTTCTTGGGGTCAGCAC



(SEQ ID NO: 67)
(SEQ ID NO: 68)


 


ADAMTS1
CTGGGCAAGAAATCTGATGA
TGGTTGTGGCAGGAAAGATA



(SEQ ID NO: 69)
(SEQ ID NO: 70)


 


CCL1
GGATGTTGACAGCAAGAGCA
CTCATCTTCACCCCGGTTAG



(SEQ ID NO: 71)
(SEQ ID NO: 72)


 


TGFB1
CCAAGGAGACGGAATACAGG
TCTCTGTGGAGCTGAAGCAA



(SEQ ID NO: 73)
(SEQ ID NO: 74)


 


CXCL1
TCATAGCCACACTCAAGAATG
AAGCAGAACTGAACTACCATC



(SEQ ID NO: 75)
(SEQ ID NO: 76)


 


CCL8
TCTACGCAGTGCTTCTTTGC
CCACTTCTGTGTGGGGTCTA



(SEQ ID NO: 77)
(SEQ ID NO: 78)


 


IL4RA
GCAGATGGCTCATGTCTGAA
CTCTGGGAAGCTGGGTGTAG



(SEQ ID NO: 79)
(SEQ ID NO: 80)


 


ARG1
TCACCTGAGCTTTGATGTCG
TTATGGTTACCCTCCCGTTG



(SEQ ID NO: 81)
(SEQ ID NO: 82)


 


SPP1
GCTTGGCTTATGGACTGAGG
CTTGTCCTTGTGGCTGTGAA



(SEQ ID NO: 83)
(SEQ ID NO: 84)


 


CCL12
GCCTCCTGCTCATAGCTACC
GGGTCAGCACAGATCTCCTT



(SEQ ID NO: 85)
(SEQ ID NO: 86)


 


CCL6
ATGTCCAGCTTTGTGGGTTC
AGGTCAGGTTCCGCAGATAA



(SEQ ID NO: 87)
(SEQ ID NO: 88)


 


CCL4
CCCACTTCCTGCTGTTTCTC
GAGCAAGGACGCTTCTCAGT



(SEQ ID NO: 89)
(SEQ ID NO: 90)


 


CTSD
CCTTCGCGATTATCAGAATCC
TACTTATGGTGGACCCAGCA



(SEQ ID NO: 91)
(SEQ ID NO: 92)


 


Ccl9
CCAGATCACACATGCAACAG
CTATAAAAATAAACACTTAGAGCCA



(SEQ ID NO: 93)
(SEQ ID NO: 94)


 


Ccl3
CGGAAGATTCCACGCCAATTC
GGTGAGGAACGTGTCCTGAAG



(SEQ ID NO: 95)
(SEQ ID NO: 96)


 


Timp2
ATCGAACCCAGAGTGGAATG
GCTAGAAACCCCAGCATGAG



(SEQ ID NO: 97)
(SEQ ID NO: 98)


 


Ccl2
CACTCACCTGCTGCTACTCATTCAC
GGATTCACAGAGAGGGAAAAATGG



(SEQ ID NO: 99)
(SEQ ID NO: 100)


 


Ccl7
GACAAAGAAGGGCATGGAAG
CATTCCTTAGGCGTGACCAT



(SEQ ID NO: 101)
(SEQ ID NO: 102)


 


Mrc1
GCAAATGGAGCCGTCTGTGC
CTCGTGGATCTCCGTGACAC


(MMR)
(SEQ ID NO: 103)
(SEQ ID NO: 104)


 


Stab1
ACGGGAAACTGCTTGATGTC
ACTCAGCGTCATGTTGTCCA



(SEQ ID NO: 105)
(SEQ ID NO: 106)


 


CD163
GAGCATGAATGAAGTGTCCG
TGCTGAAGTTGTCGTCACAC



(SEQ ID NO: 107)
(SEQ ID NO: 108)


 


Lyve1
CTGGCTGTTTGCTACGTGAA
CATGAAACTTGCCTCGTGTG



(SEQ ID NO: 109)
(SEQ ID NO: 110)
















TABLE 4





Anti- mouse CD206 (MMR) nanobodies (anti-MMR nanobody clone 1 and


3): monovalent en bivalent constructs and nanobodies
















DNA seq + His
CAGGTGCAGCTGCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCG


(clone 1)
GCTGGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTA


SEQ ID NO: 1
CTCTTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCAT



CTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAA



ACCTGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCT



GACGTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCACACC



ACCATCACCATCAC


 


DNA seq − His
CAGGTGCAGCTGCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCG


(clone 1)
GCTGGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTA


SEQ ID NO: 2
CTCTTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCAT



CTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAA



ACCTGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCT



GACGTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCA


 


Protein + His tag
QVQLQESGGGLVQPGGSLRLSCAASGNIFSINAIGWYRQAPGKQRELVATITLS


(clone 1)
GSTNYADSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCNANTYSDSDVY


SEQ ID NO: 3
GYWGQGTQVTVSSHHHHHH


 


Protein − His tag
QVQLQESGGGLVQPGGSLRLSCAASGNIFSINAIGWYRQAPGKQRELVATITLS


(clone 1)
GSTNYADSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCNANTYSDSDVY


SEQ ID NO: 4
GYWGQGTQVTVSS


 


DNA seq + His
CAGGTGCAGCTGCAGGAGTCTGGAGGAGGATTGGTGCAGGCTGGGGGCTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGACGCACCTTCAGTAGAGATGCCATGG


(clone 3)
GCTGGTTCCGCCAGGCTCCAGGGAAGGAGCGTGAGTTTGTAGCAGGTATTA


SEQ ID NO: 5
GCTGGAGTGGTGGTAGCACATACTATGCAGACTCCGTGAAGGGCCGATTCA



CCATCTCCAGGGACGGCGCCAAGAACACGGTAAATCTGCAAATGAACAGCC



TGAAACCTGAGGACACGGCCGTTTATTACTGTGCAGCATCGTCGATTTATGG



GAGTGCGGTAGTAGATGGGCTGTATGACTACTGGGGCCAGGGGACCCAGGT



CACCGTCTCCTCACACCACCATCACCATCAC


 


DNA seq − His
CAGGTGCAGCTGCAGGAGTCTGGAGGAGGATTGGTGCAGGCTGGGGGCTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGACGCACCTTCAGTAGAGATGCCATGG


(clone 3)
GCTGGTTCCGCCAGGCTCCAGGGAAGGAGCGTGAGTTTGTAGCAGGTATTA


SEQ ID NO: 6
GCTGGAGTGGTGGTAGCACATACTATGCAGACTCCGTGAAGGGCCGATTCA



CCATCTCCAGGGACGGCGCCAAGAACACGGTAAATCTGCAAATGAACAGCC



TGAAACCTGAGGACACGGCCGTTTATTACTGTGCAGCATCGTCGATTTATGG



GAGTGCGGTAGTAGATGGGCTGTATGACTACTGGGGCCAGGGGACCCAGGT



CACCGTCTCCTCA


 


Protein + His tag
QVQLQESGGGLVQAGGSLRLSCAASGRTFSRDAMGWFRQAPGKEREFVAGIS


(clone 3)
WSGGSTYYADSVKGRFTISRDGAKNTVNLQMNSLKPEDTAVYYCAASSIYGSA


SEQ ID NO: 7
VVDGLYDYWGQGTQVTVSSHHHHHH


 


Protein − His tag
QVQLQESGGGLVQAGGSLRLSCAASGRTFSRDAMGWFRQAPGKEREFVAGIS


(clone 3)
WSGGSTYYADSVKGRFTISRDGAKNTVNLQMNSLKPEDTAVYYCAASSIYGSA


SEQ ID NO: 8
VVDGLYDYWGQGTQVTVSS


 


DNA seq + His
CAGGTGCAGCTTCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCG


(MMR biv IgA)
GCTGGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTA


SEQ ID NO: 111
CTCTTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCAT



CTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAA



ACCTGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCT



GACGTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCAAGC



CCATCTACACCTCCCACACCATCACCATCCACACCACCGGCAAGTCAGGTGC



AGCTGCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCTCTGAGAC



TCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCGGCTGGTA



CCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTACTCTTAG



TGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCATCTCCAG



AGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAAACCTGA



GGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCTGACGTT



TATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCACACCACCATC



ACCATCAC


 


Protein + His tag
QVQLQESGGGLVQPGGSLRLSCAASGNIFSINAIGWYRQAPGKQRELVATITLS


(MMR biv IgA)
GSTNYADSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCNANTYSDSDVY


SEQ ID NO: 112
GYWGQGTQVTVSSSPSTPPTPSPSTPPASQVQLQESGGGLVQPGGSLRLSCAAS



GNIFSINAIGWYRQAPGKQRELVATITLSGSTNYADSVKGRFSISRDNAKNTVYL



QMNSLKPEDTAVYYCNANTYSDSDVYGYWGQGTQVTVSSHHHHHH


 


DNA seq + His
CAGGTGCAGCTTCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCG


(MMR biv
GCTGGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTA


(Gly4Ser)3)
CTCTTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCAT


SEQ ID NO: 113
CTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAA



ACCTGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCT



GACGTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCAGGC



GGAGGCGGTAGTGGCGGAGGTGGATCTGGAGGCGGCGGTAGTCAGGTGCA



GCTGCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCTCTGAGACT



CTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCGGCTGGTAC



CGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTACTCTTAGT



GGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCATCTCCAGA



GACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAAACCTGAG



GACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCTGACGTTT



ATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCACACCACCATC



ACCATCAC


 


Protein + His tag
QVQLQESGGGLVQPGGSLRLSCAASGNIFSINAIGWYRQAPGKQRELVATITLS


(MMR biv
GSTNYADSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCNANTYSDSDVY


(Gly4Ser)3)
GYWGQGTQVTVSSGGGGSGGGGSGGGGSQVQLQESGGGLVQPGGSLRLSCAA


SEQ ID NO: 114
SGNIFSINAIGWYRQAPGKQRELVATITLSGSTNYADSVKGRFSISRDNAKNTVY



LQMNSLKPEDTAVYYCNANTYSDSDVYGYWGQGTQVTVSSHHHHHH


 


DNA seq + His
CAGGTGCAGCTTCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCT


tag
CTGAGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCG


(MMR biv g2c)
GCTGGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTA


SEQ ID NO: 115
CTCTTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCAT



CTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAA



ACCTGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCT



GACGTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCAGCG



CACCACAGCGAAGACCCCAGCTCCAAAGCTCCCAAAGCTCCAATGGCACAG



GTGCAGCTGCAGGAGTCTGGAGGAGGCTTGGTGCAGCCTGGGGGGTCTCTG



AGACTCTCCTGTGCAGCCTCTGGAAACATCTTCAGTATCAATGCCATCGGCT



GGTACCGCCAGGCTCCAGGGAAGCAGCGCGAGTTGGTCGCAACTATTACTC



TTAGTGGTAGCACAAACTATGCAGACTCCGTGAAGGGCCGATTCTCCATCTC



CAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAAACC



TGAGGACACGGCCGTCTATTACTGTAATGCTAACACCTATAGCGACTCTGAC



GTTTATGGCTACTGGGGCCAGGGGACCCAGGTCACCGTCTCCTCACACCACC



ATCACCATCAC


 


Protein + His tag
QVQLQESGGGLVQPGGSLRLSCAASGNIFSINAIGWYRQAPGKQRELVATITLS


(MMR biv g2c)
GSTNYADSVKGRFSISRDNAKNTVYLQMNSLKPEDTAVYYCNANTYSDSDVY


SEQ ID NO: 116
GYWGQGTQVTVSSAHHSEDPSSKAPKAPMAQVQLQESGGGLVQPGGSLRLSC



AASGNIFSINAIGWYRQAPGKQRELVATITLSGSTNYADSVKGRFSISRDNAKNT



VYLQMNSLKPEDTAVYYCNANTYSDSDVYGYWGQGTQVTVSSHHHHHH
















TABLE 5







SPR kinetic and equilibrium parameters for anti-MMR Nanobodies and


bivalent Nanobody 1 derivatives.













Sample
ka
SE (ka)
kd
SE (kd)
KD
Chi2
















Anti-
5.76E+05
1.4E+3
0.01331
2.1E−5
2.31E−08
0.558


MMR








Nb1








Anti-
9.73E+04
1.6E+2
0.01859
2.2E−5
1.91E−07
0.190


MMR








Nb3








biv MMR
1.04E+06
4.9E+3
0.004404
1.4E−5
4.22E−09
3.56


linker








1 GS








biv MMR
1.02E+06
4.8E+3
0.004107
1.4E−5
4.04E−09
2.50


linker








2 g2c








biv MMR
9.13E+05
1.5E+4
0.004285
5.3E−5
4.69E−09
2.25


linker








3 IgA





Nb: Nanobody;


biv: bivalent;


GS: (Gly4Ser)3 linker;


g2c: llama IgG2 hinge linker;


IgA: human IgA hinge linker;


SE: standard error.













TABLE 6







Uptake values of 99mTc-labeled anti-MMR Nb clone 1 in naive and


MMR−/− mice based on Pinhole SPECT/micro-CT at 1 hour post


injection. Tracer uptake is expressed as percentage injected activity per


gram cubic centimeter (% IA/cm3).










MMR Nb in



Organs/Tissues
WT (% IA/cm3)
MMR Nb in MMR−/− (% IA/cm3)





Heart
2.04 ± 0.21
1.13 ± 0.12


Lungs
5.96 ± 0.16
9.06 ± 2.43


Liver
18.66 ± 0.87 
0.91 ± 0.16


Spleen
6.17 ± 0.31
0.34 ± 0.21


Kidney Left
80.98 ± 1.65 
100.58 ± 0.4  


Kidney Right
81.65 ± 2.32 
102.82 ± 6.17 


Muscle
1.74 ± 0.50
0.39 ± 0.22


Bone
5.02 ± 0.01
0.46 ± 0.02
















TABLE 7







Uptake values of 99mTc-labeled bivalent anti-MMR Nb constructs (with (G4S)3, llama IgG2 hinge or human IgA


hinge linkers), monovalent anti-MMR Nb clone 1, and control cAbBCII10 Nb in naive and MMR−/− mice based on Pinhole SPECT/micro-CT


at 1 hour post injection.


Tracer uptake is expressed as percentage injected activity per gram cubic centimeter (% IA/cm3).


















Llama
Llama







(G4S)3
(G4S)3
IgG2c
IgG2c
Human IgA
Human IgA




Organs-
WT
MMR−/−
WT
MMR−/−
WT
MMR−/−
MMR Nb
cAbBCII10


Tissues
(% IA/cm3)
(% IA/cm3)
(% IA/cm3)
(% IA/cm3)
(% IA/cm3)
(% IA/cm3)
WT (% IA/cm3)
WT (% IA/cm3)





Heart
 1.549 ± 0.057
0.541 ± 0.013
 1.416 ± 0.147
0.440 ± 0.070
 1.395 ± 0.083
 0.505 ± 0.057
 2.793 ± 0.043
 0.693 ± 0.128


Lungs
 1.053 ± 0.082
1.246 ± 0.038
 0.987 ± 0.167
1.271 ± 0.130
 0.936 ± 0.086
 1.169 ± 0.161
 2.543 ± 0.417
 1.837 ± 0.271


Liver
20.857 ± 0.215
0.930 ± 0.081
20.491 ± 0.578
1.658 ± 0.077
21.571 ± 0.435
 1.176 ± 0.044
13.670 ± 0.741
 2.637 ± 0.203


Spleen
14.018 ± 1.669
0.634 ± 0.042
13.618 ± 1.497
1.347 ± 0.300
13.805 ± 1.353
 0.477 ± 0.007
13.070 ± 0.251
 0.933 ± 0.113


Kidney
26.381 ± 2.054
225.129 ±
24.257 ± 1.129
193.162 ±
26.728 ± 3.014
210.760 ± 14.414
160.443 ± 13.153
415.643 ± 15.162


Left

13.936

8.114






Kidney
26.074 ± 2.227
212.682 ±
24.599 ± 2.053
202.343 ±
24.947 ± 2.463
214.144 ± 11.751
159.003 ± 13.700
408.597 ± 22.588


Right

6.308

0.779






Muscle
 0.251 ± 0.034
0.224 ± 0.010
 0.158 ± 0.023
0.216 ± 0.015
 0.212 ± 0.045
 0.205 ± 0.004
ND
ND


Bone
 1.466 ± 0.062
0.282 ± 0.016
 1.041 ± 0.114
0.254 ± 0.030
 1.089 ± 0.138
 0.263 ± 0.022
ND
ND
















TABLE 8







Uptake values of 99mTc-labeled anti-MMR or cAbBCII10 Nb in TS/A


tumor-bearing WT mice, based on dissection at 3 hours post injection.


Tracer uptake is expressed as injected activity per gram tissue (% IA/g).










anti-MMR



Organs/Tissues
Nb in WT (% IA/g)
cAbBcII10 Nb in WT (% IA/g)





Heart
1.45 ± 0.12
0.10 ± 0.01


Lungs
1.55 ± 0.36
0.98 ± 0.12


Liver
12.60 ± 0.54 
0.59 ± 0.02


Spleen
8.95 ± 0.60
0.24 ± 0.01


Kidney Left
79.67 ± 2.32 
273.25 ± 14.76 


Kidney Right
80.78 ± 3.62 
261.16 ± 11.35 


Muscle
0.52 ± 0.03
0.05 ± 0.01


Bone
1.33 ± 0.10
0.08 ± 0.01


Blood
0.13 ± 0.02
0.14 ± 0.01


Tumor
3.02 ± 0.10
0.40 ± 0.03
















TABLE 9







Uptake values of 99mTc-labeled anti-MMR or cAbBCII10 Nb in 3LL


tumor-bearing WT or MMR−/− mice, based on dissection at 3 hours


post injection. Tracer uptake is expressed as injected activity per


gram (% IA/g).












anti-MMR Nb in




anti-MMR Nb in
MMR−/−
cAbBcII10 Nb in


Organs/Tissues
WT (% IA/g)
(% IA/g)
WT (% IA/g)





Heart
2.02 ± 0.11
0.06 ± 0.01
0.17 ± 0.01


Lungs
1.46 ± 0.05
1.02 ± 0.70
0.58 ± 0.04


Liver
9.55 ± 1.02
1.36 ± 1.06
1.03 ± 0.06


Spleen
4.61 ± 0.50
0.17 ± 0.02
0.41 ± 0.03


Kidney Left
108.61 ± 16.11 
153.29 ± 27.22 
368.79 ± 10.10 


Kidney Right
88.60 ± 21.70
154.90 ± 20.71 
305.21 ± 54.67 


Muscle
0.61 ± 0.05
0.05 ± 0.02
0.08 ± 0.02


Bone
1.69 ± 0.10
0.06 ± 0.01
0.13 ± 0.01


Blood
0.10 ± 0.01
0.09 ± 0.01
0.24 ± 0.01


Tumor
3.02 ± 0.19
0.33 ± 0.03
0.74 ± 0.03
















TABLE 10







Uptake values of 99mTc-labeled α-MMR Nb in s.c. 3LL-R tumor-bearing


WT or CCR2-KO mice, based on dissection at 3 hours post injection.


Tracer uptake is expressed as injected activity per gram (% IA/g).










α-MMR Nb in



Organs/Tissues
WT (% IA/g)
α-MMR Nb in CCR2-KO (% IA/g)





Heart
1.77 ± 0.06
1.94 ± 0.08


Lungs
1.54 ± 0.25
1.21 ± 0.10


Liver
14.1 ± 0.83
15.9 ± 0.65


Spleen
5.80 ± 0.25
7.14 ± 0.34


Kidney Left
 103 ± 6.72
92.0 ± 7.56


Kidney Right
 105 ± 7.55
92.7 ± 9.3 


Muscle
0.36 ± 0.03
0.46 ± 0.06


Bone
1.04 ± 0.06
1.01 ± 0.03


Blood
0.16 ± 0.01
0.17 ± 0.01


Tumor
2.96 ± 0.22
1.81 ± 0.11
















TABLE 11







Anti-human MMR Nbs selected after ELISA on human MMR of PE-extracts


from single Nb clones isolated from phage display.


 In addition to the Nb sequence sensu strictu depicted here,


all clones also carry a C-terminal extension


 containing a HA and 6xHis tag (AAAYPYDVPDYGSHHHHHH;


SEQ ID NO: 257). 










SEQ ID



Name
NO:
Sequence





NbhMMR m1.33
126






 


NbhMMR m10.19
127






 


NbhMMR m23.30
128






 


NbhMMR m2.15
129






 


NbhMMR m3.1
130






 


NbhMMR m5.38
131






 


NbhMMR m12.6
132






 


NbhMMR m11.5
133






 


NbhMMR m15.43
134






 


NbhMMR m16.95
135






 


NbhMMR m4.83
136









CDR1 (red), CDR2 (green) and CDR3 (blue) domains are also indicated, and are listed separately in Table 14.













TABLE 12







Anti-human/mouse MMR cross-reactive Nbs selected after ELISA on human


MMR and mouse MMR of PE-extracts from single Nb clones 


isolated from phage display. In addition to the


Nb sequence sensu strictu depicted here, all clones also


 carry a C-terminal extension containing a HA and


6xHis tag (AAAYPYDVPDYGSHHHHHH; SEQ ID NO: 257).










SEQ ID



Name
NO:
Sequence





NbhmMM Rm14.4
137






 


NbhmMM Rm6.71
138






 


NbhmMM Rm24.31
139






 


NbhmMM Rm20.52
140






 


NbhmMM Rm3.49
141






 


NbhmMM Rm22.84
142






 


NbhmMM Rm19.52
143






 


NbhmMM Rm21.22
144






 


NbhmMM Rm14.93
145






 


NbhmMM Rm15.49
146






 


NbhmMM Rm17.72
147






 


NbhmMM Rm10.79
148









CDR1 (red), CDR2 (green) and CDR3 (blue) domains are also indicated, and are listed separately in Table 14.













TABLE 13







Production yields and physico-chemical characteristics of the anti-human MMR and anti-human/


mouse MMR cross-reactive Nbs. All Nbs produce between 0.7 and 9 mg/l E. coli culture.
















Extinction
Estimated



number of
MW

coefficient
production



A.A.
Nb + HA + His
Theoretical
(assuming all Cys
capacity (g/l


Name
Nb + HA + His
(dalton)
pi
form cystines)
E. Coli)










anti-human MMR Nbs












NbhMMRm1.33
152
16545
6.30
30620
0.7


NbhMMRm10.19
140
15188
6.63
31525
3.7


NbhMMRm23.30
144
16150
5.71
63035
2.3


NbhMMRm2.15
146
16095
5.58
29130
1.6


NbhMMRm3.1
137
14961
6.63
30620
1.1


NbhMMRm5.38
150
16535
5.51
36120
1.2


NbhMMRm12.6
138
15011
6.13
23045
1.7


NbhMMRm11.5
139
15106
7.17
26025
6.8


NbhMMRm15.43
131
14266
8.00
30035
6.2


NbhMMRm16.95
140
15025
7.17
26025
5.6


NbhMMRm4.83
149
16395
6.70
36120
3.0







anti-human/anti-mouse MMR Nbs












NbhmMMRm14.4
141
15275
6.29
26025
1.6


NbhmMMRm6.71
144
15295
5.70
24660
2.4


NbhmMMRm24.31
144
15793
8.00
26025
1.0


NbhmMMRm20.52
143
15431
8.00
30035
5.4


NbhmMMRm3.49
137
14875
6.63
29130
1.6


NbhmMMRm22.84
149
16628
7.25
35995
4.2


NbhmMMRm19.52
136
14986
8.59
31525
4.1


NbhMMRm21.22
137
15045
5.91
26025
2.1


NbhmMMRm14.93
141
15289
6.63
26025
2.6


NbhmMMRm15.49
131
14226
8.00
30035
4.0


NbhmMMRm17.72
138
14896
7.18
24535
3.4


NbhmMMRm10.79
140
15130
6.63
31525
T.B.D


NbhmMMRm7.67
137
15153
7.18
30035
4.0


NbhmMMRm8.67
151
16635
6.76
40005
2.0


NbhmMMRm13.89
139
15096
6.70
30035
5.4


NbhmMMRm18.63
135
14393
7.18
34045
9.0


NbhmMMRm25.86
135
14891
6.29
24535
3.9


NbhmMMRm26.70
140
15299
7.18
24535
6.0


NbhmMMRm27.95
140
15392
7.22
24535
1.0





T.B.D.: to be determined













TABLE 14







CDRs of MMR-specific nanobodies












SEQ





Nanobody
ID





reference number
NO1
CDR1
CDR2
CDR3





Nanobody clone 1
  4
SGNIFSINAIG
TITLSGSTN
NTYSDSDVYGY




(SEQ ID NO: 156)
(SEQ ID NO: 188)
(SEQ ID NO: 220)


 


Nanobody clone 3
  8
SGRTFSRDAMG
GISWSGGST
SSIYGSAVVDGLYD




(SEQ ID NO:157)
(SEQ ID NO: 189)
Y






(SEQ ID NO: 221)


 


NbhMMRm1.33
126
GFTLDNYTVA
CISSSGGST
ERAPPYYSGYYFFDS




(SEQ ID NO: 158)
(SEQ ID NO: 190)
TCVAASYDY






(SEQ ID NO: 222)


 


NbhMMRm10.19
127
GSIFSIKTMG
AITSGGST
DGVVAWDQPYDNY




(SEQ ID NO: 159)
(SEQ ID NO: 191)
(SEQ ID NO: 223)


 


NbhMMRm23.30
128
GDTFNHYSWG
AISWNGGS
DRRPYNDWWDDWS




(SEQ ID NO: 160)
(SEQ ID NO: 192)
WWVY






(SEQ ID NO: 224)


 


NbhMMRm2.15
129
GFTLDYYDIG
CISSIGGSA
EAQTPYNDGDCTRA




(SEQ ID NO: 161)
(SEQ ID NO: 193)
SYDY






(SEQ ID NO: 225)


 


NbhMMRm3.1
130
GFTLDYYAIG
CISYKGGST
GFVCYNYDY




(SEQ ID NO: 162)
(SEQ ID NO: 194)
(SEQ ID NO: 226)


 


NbhMMRm5.38
131
GFTDDDYDIG
CISSSDGST
DFFRWDSGSYYVRG




(SEQ ID NO: 163)
(SEQ ID NO: 195)
CRHATYDY






(SEQ ID NO: 227)


 


NbhMMRm12.6
132
GSFLSINHMG
AITSGGST
DALTMLPPFDF




(SEQ ID NO: 164)
(SEQ ID NO: 196)
(SEQ ID NO: 228)


 


NbhMMRm11.5
133
GNIFTINRMG
AITSGGNT
AIVTMTSPYSDY




(SEQ ID NO: 165)
(SEQ ID NO: 197)
(SEQ ID NO: 229)


 


NbhMMRm15.43
134
GSTFSINNMG
GITGGNT
NWGAY




(SEQ ID NO: 166)
(SEQ ID NO: 198)
(SEQ ID NO: 230)


 


NbhMMRm16.95
135
GRIASISAMG
AITGSGRT
LMVDYGLGLGTDY




(SEQ ID NO: 167)
(SEQ ID NO: 199)
(SEQ ID NO: 231)


 


NbhMMRm4.83
136
PGFKLDYYAIA
CIGGSGSGLT
DTYYYCSKRVWRN




(SEQ ID NO: 168)
(SEQ ID NO: 200)
DYGS






(SEQ ID NO: 232)


 


NbhmMMRm14.4
137
GRTFSINYMG
AITSGSGST
DMDSSLSGGYVDV




(SEQ ID NO: 169)
(SEQ ID NO: 201)
(SEQ ID NO: 233)


 


NbhmMMRm6.71
138
GGTFDDSVIG
CISSNDGTT
ETPSIGSPCTSASYD




(SEQ ID NO: 170)
(SEQ ID NO: 202)
Y






(SEQ ID NO: 234)


 


NbhmMMRm24.31
139
GFTLKNHHIG
SINSSGGST
LRRYYGLNLDPGSY




(SEQ ID NO: 171)
(SEQ ID NO: 203)
DY






(SEQ ID NO: 235)


 


NbhmMMRm20.52
140
GRIFSAYAMG
AISRSGDST
RTVSAPPSAAWGYG




(SEQ ID NO: 172)
(SEQ ID NO: 204)
Y






(SEQ ID NO: 236)


 


NbhmMMRm3.49
141
GFSLDYYAIG
CISYKGGST
GFVCYNYDY




(SEQ ID NO: 173)
(SEQ ID NO: 205)
(SEQ ID NO: 237)


 


NbhmMMRm22.84
142
GRTFSNYVNYAMG
SISWSSVTT
HLAQYSDYAYRDPH




(SEQ ID NO: 174)
(SEQ ID NO: 206)
QFGA






(SEQ ID NO: 238)


 


NbhmMMRm19.52
143
GDTFSNYVMA
AIRLSGAR
GHTWGQYAY




(SEQ ID NO: 175)
(SEQ ID NO: 207)
(SEQ ID NO: 239)


 


NbhmMMRm21.22
144
GRTFSSAAMG
LINLDDGET
RGRFDDNYEY




(SEQ ID NO: 176)
(SEQ ID NO: 208)
(SEQ ID NO: 240)


 


NbhmMMRm14.93
145
GRTFSINYMG
AITSGSGST
DMDSSLSGGYVDV




(SEQ ID NO: 177)
(SEQ ID NO: 209)
(SEQ ID NO: 241)


 


NbhmMMRm15.49
146
GSTFSINNMG
GITGGNT
NWGAY




(SEQ ID NO: 178)
(SEQ ID NO: 210)
(SEQ ID NO: 242)


 


NbhmMMRm17.72
147
GSIVSINAMG
LVTGSGRT
LVIGPLEGYDY




(SEQ ID NO: 179)
(SEQ ID NO: 211)
(SEQ ID NO: 243)


 


NbhmMMRm10.79
148
GSIFSIKTMG
AVSSGGST
DGVVAWDQPYDNY




(SEQ ID NO: 180)
(SEQ ID NO: 212)
(SEQ ID NO: 244)


 


NbhmMMRm7.67
149
GRTFSVNAMA
SITSSGLDT
ERWDNGMVY




(SEQ ID NO: 181)
(SEQ ID NO: 213)
(SEQ ID NO: 245)


 


NbhmMMRm8.67
150
GSMFSINAWG
SITSGGGST
ERWDGYALGYSPNH




(SEQ ID NO: 182)
(SEQ ID NO: 214)
GSGHRPYNY






(SEQ ID NO: 246)


 


NbhmMMRm13.89
151
GSIFSINAWG
EITSSGST
VAVTFTTPRSDY




(SEQ ID NO: 183)
(SEQ ID NO: 215)
(SEQ ID NO: 247)


 


NbhmMMRm18.63
152
GSIISINAMA
AISSGGST
GGGWRPGA




(SEQ ID NO: 184)
(SEQ ID NO: 216)
(SEQ ID NO: 248)


 


NbhmMMRm25.86
153
GFTVSTSMIN
DVLPSGST
NRETMPPF




(SEQ ID NO: 185)
(SEQ ID NO: 217)
(SEQ ID NO: 249)


 


NbhmMMRm26.70
154
GFPFSSAPMS
YIGYTGTIT
GYARLIADSDLV




(SEQ ID NO: 186)
(SEQ ID NO: 218)
(SEQ ID NO: 250)


 


NbhmMMRm27.95
155
GFPFNIYPMS
YISHGGTTT
GYARLMTDSELV




(SEQ ID NO: 187)
(SEQ ID NO: 219)
(SEQ ID NO: 251)





1Nanobody sequences without His tag













TABLE 15







Amino acid sequences of human and mouse macrophage mannose


receptor










SEQ




ID



Name
NO
Amino acid sequence





Human MMR
258
MRLPLLLVFASVIPGAVLLLDTRQFLIYNEDHKRCVDAVSPSAVQ


(MRC1)

TAACNQDAESQKFRWVSESQIMSVAFKLCLGVPSKTDWVAITLY




ACDSKSEFQKWECKNDTLLGIKGEDLFFNYGNRQEKNIMLYKGS




GLWSRWKIYGTTDNLCSRGYEAMYTLLGNANGATCAFPFKFENK




WYADCTSAGRSDGWLWCGTTTDYDTDKLFGYCPLKFEGSESLW




NKDPLTSVSYQINSKSALTWHQARKSCQQQNAELLSITEIHEQTYL




TGLTSSLTSGLWIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAE




PGKSCVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSES




DVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTS




IHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTK




WLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMK




SRSQGPEIVEVEKGCRKGWKKHHFYCYMIGHTLSTFAEANQTCN




NENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQW




TIEEEVRFTHWNSDMPGRKPGCVAMRTGIAGGLWDVLKCDEKA




KFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAK




GKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYH




KLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYC




GELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPP




VTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSES




EKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSW




ATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQRHNSSIN




ATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEAR




KACIGFGGNLVSIQNEKEQAFLTYHMKDSTFSAWTGLNDVNSEH




TFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNE




AGKWMDDTCDSKRGYICQTRSDPSLTNPPATIQTDGFVKYGKSS




YSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSN




ERVWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSACVY




LDLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTA




WIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLS




YRVEPLKSKTNFWIGLFRNVEGTWLWINNSPVSFVNWNTGDPSG




ERNDCVALHASSGFWSNIHCSSYKGYICKRPKIIDAKPTHELLTTK




ADTRKMDPSKPSSNVAGVVIIVILLILTGAGLAAYFFYKKRRVHLP




QEGAFENTLYFNSQSSPGTSDMKDLVGNIEQNEHSVI


 


Recombinant
259
LLDTRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVS


human MMR

ESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDT


(R&D systems)

LLGIKGEDLFFNYGNRQEKNIMLYKGSGLWSRWKIYGTTDNLCS




RGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWL




WCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSA




LTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSGLWIGLNS




LSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKW




ENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGH




CYKIHRDEKKIQRDALTTCRKEGGDLASIHTIEEFDFIISQLGYEPN




DELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDC




VVMKGKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRK




GWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAF




LTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMPG




RKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKP




TTTPEPKCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRAL




GGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTW




SDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEH




LNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSK




EKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAY




FIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYS




NSGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGW




NFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQA




FLTYHMKDSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKG




YPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ




TRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKL




HNSLIASILDPYSNAFAWLQMETSNERVWIALNSNLTDNQYTWT




DKWRVRYTNWAADEPKLKSACVYLDLDGYWKTAHCNESFYFL




CKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWG




QASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNV




EGTWLWINNSPVSFVNWNTGDPSGERNDCVALHASSGFWSNIHC




SSYKGYICKRPKIIDAKPTHELLTTKADTRKMDPSKHHHHHH


 


Mouse MMR
260
MRLLLLLAFISVIPVSVQLLDARQFLIYNEDHKRCVDALSAISVQT


(Mrc 1)

ATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYA




CDSKSEYQKWECKNDTLFGIKGTELYFNYGNRQEKNIKLYKGSG




LWSRWKVYGTTDDLCSRGYEAMYSLLGNANGAVCAFPFKFENK




WYADCTSAGRSDGWLWCGTTTDYDKDKLFGFCPLHFEGSERLW




NKDPLTGILYQINSKSALTWHQARASCKQQNADLLSVTEIHEQMY




LTGLTSSLSSGLWIGLNSLSVRSGWQWAGGSPFRYLNWLPGSPSS




EPGKSCVSLNPGKNAKWENLECVQKLGYICKKGNNTLNPFIIPSA




SDVPTGCPNQWWPYAGHCYRIHREEKKIQKYALQACRKEGGDL




ASIHSIEEFDFIFSQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTF




TKWLPGEPSHENNRQEDCVVMKGKDGYWADRACEQPLGYICK




MVSQSHAVVPEGADKGCRKGWKRHGFYCYLIGSTLSTFTDANHT




CTNEKAYLTTVEDRYEQAFLTSLVGLRPEKYFWTGLSDVQNKGT




FRWTVDEQVQFTHWNADMPGRKAGCVAMKTGVAGGLWDVLS




CEEKAKFVCKHWAEGVTRPPEPTTTPEPKCPENWGTTSKTSMCF




KLYAKGKHEKKTWFESRDFCKAIGGELASIKSKDEQQVIWRLITS




SGSYHELFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQN




VEYCGELKGDPGMSWNDINCEHLNNWICQIQKGKTLLPEPTPAPQ




DNPPVTADGWVIYKDYQYYFSKEKETMDNARAFCKKNFGDLATI




KSESEKKFLWKYINKNGGQSPYFIGMLISMDKKFIWMDGSKVDF




VAWATGEPNFANDDENCVTMYTNSGFWNDINCGYPNNFICQRH




NSSINATAMPTTPTTPGGCKEGWHLYKNKCFKIFGFANEEKKSW




QDARQACKGLKGNLVSIENAQEQAFVTYHMRDSTFNAWTGLNDI




NAEHMFLWTAGQGVHYTNWGKGYPGGRRSSLSYEDADCVVVIG




GNSREAGTWMDDTCDSKQGYICQTQTDPSLPVSPTTTPKDGFVT




YGKSSYSLMKLKLPWHEAETYCKDHTSLLASILDPYSNAFAWMK




MHPFNVPIWIALNSNLTNNEYTWTDRWRVRYTNWGADEPKLKS




ACVYMDVDGYWRTSYCNESFYFLCKKSDEIPATEPPQLPGKCPES




EQTAWIPFYGHCYYFESSFTRSWGQASLECLRMGASLVSIETAAE




SSFLSYRVEPLKSKTNFWIGMFRNVEGKWLWLNDNPVSFVNWKT




GDPSGERNDCVVLASSSGLWNNIHCSSYKGFICKMPKIIDPVTTHS




SITTKADQRKMDPQPKGSSKAAGVVTVVLLIVIGAGVAAYFFYK




KRHALHIPQEATFENTLYFNSNLSPGTSDTKDLMGNIEQNEHAII


 


Recombinant 
261
LLDARQFLIYNEDHKRCVDALSAISVQTATCNPEAESQKFRWVSD


mouse MMR

SQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWECKNDTL


(R&D systems)

FGIKGTELYFNYGNRQEKNIKLYKGSGLWSRWKVYGTTDDLCSR




GYEAMYSLLGNANGAVCAFPFKFENKWYADCTSAGRSDGWLW




CGTTTDYDKDKLFGFCPLHFEGSERLWNKDPLTGILYQINSKSAL




TWHQARASCKQQNADLLSVTEIHEQMYLTGLTSSLSSGLWIGLNS




LSVRSGWQWAGGSPFRYLNWLPGSPSSEPGKSCVSLNPGKNAKW




ENLECVQKLGYICKKGNNTLNPFIIPSASDVPTGCPNQWWPYAGH




CYRIHREEKKIQKYALQACRKEGGDLASIHSIEEFDFIFSQLGYEPN




DELWIGLNDIKIQMYFEWSDGTPVTFTKWLPGEPSHENNRQEDCV




VMKGKDGYWADRACEQPLGYICKMVSQSHAVVPEGADKGCRK




GWKRHGFYCYLIGSTLSTFTDANHTCTNEKAYLTTVEDRYEQAF




LTSLVGLRPEKYFWTGLSDVQNKGTFRWTVDEQVQFTHWNADM




PGRKAGCVAMKTGVAGGLWDVLSCEEKAKFVCKHWAEGVTRP




PEPTTTPEPKCPENWGTTSKTSMCFKLYAKGKHEKKTWFESRDFC




KAIGGELASIKSKDEQQVIWRLITSSGSYHELFWLGLTYGSPSEGF




TWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPGMSWNDINC




EHLNNWICQIQKGKTLLPEPTPAPQDNPPVTADGWVIYKDYQYYF




SKEKETMDNARAFCKKNFGDLATIKSESEKKFLWKYINKNGGQS




PYFIGMLISMDKKFIWMDGSKVDFVAWATGEPNFANDDENCVT




MYTNSGFWNDINCGYPNNFICQRHNSSINATAMPTTPTTPGGCKE




GWHLYKNKCFKIFGFANEEKKSWQDARQACKGLKGNLVSIENA




QEQAFVTYHMRDSTFNAWTGLNDINAEHMFLWTAGQGVHYTN




WGKGYPGGRRSSLSYEDADCVVVIGGNSREAGTWMDDTCDSKQ




GYICQTQTDPSLPVSPTTTPKDGFVTYGKSSYSLMKLKLPWHEAE




TYCKDHTSLLASILDPYSNAFAWMKMHPFNVPIWIALNSNLTNNE




YTWTDRWRVRYTNWGADEPKLKSACVYMDVDGYWRTSYCNES




FYFLCKKSDEIPATEPPQLPGKCPESEQTAWIPFYGHCYYFESSFTR




SWGQASLECLRMGASLVSIETAAESSFLSYRVEPLKSKTNFWIGM




FRNVEGKWLWLNDNPVSFVNWKTGDPSGERNDCVVLASSSGLW




NNIHCSSYKGFICKMPKIIDPVTTHSSITTKADQRKMDPQPKGSSK




AHHHHHH


 


Human MMR
262
LLDTRQFLIYNEDHKRCVDAVSPSAVQTAACNQDAESQKFRWVS


(MRC1)-

ESQIMSVAFKLCLGVPSKTDWVAITLYACDSKSEFQKWECKNDT


ectodomain

LLGIKGEDLFFNYGNRQEKNIMLYKGSGLWSRWKIYGTTDNLCS




RGYEAMYTLLGNANGATCAFPFKFENKWYADCTSAGRSDGWL




WCGTTTDYDTDKLFGYCPLKFEGSESLWNKDPLTSVSYQINSKSA




LTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSGLWIGLNS




LSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKW




ENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGH




CYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPN




DELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDC




VVMKGKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRK




GWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAF




LTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMPG




RKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKP




TTTPEPKCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRAL




GGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTW




SDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEH




LNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSK




EKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAY




FIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYS




NSGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGW




NFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQA




FLTYHMKDSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKG




YPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ




TRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKL




HNSLIASILDPYSNAFAWLQMETSNERVWIALNSNLTDNQYTWT




DKWRVRYTNWAADEPKLKSACVYLDLDGYWKTAHCNESFYFL




CKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWG




QASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNV




EGTWLWINNSPVSFVNWNTGDPSGERNDCVALHASSGFWSNIHC




SSYKGYICKRPKIIDAKPTHELLTTKADTRKMDPSK


 


Mouse MMR
263
LLDARQFLIYNEDHKRCVDALSAISVQTATCNPEAESQKFRWVSD


(Mrc1)-

SQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKWECKNDTL


ectodomain

FGIKGTELYFNYGNRQEKNIKLYKGSGLWSRWKVYGTTDDLCSR




GYEAMYSLLGNANGAVCAFPFKFENKWYADCTSAGRSDGWLW




CGTTTDYDKDKLFGFCPLHFEGSERLWNKDPLTGILYQINSKSAL




TWHQARASCKQQNADLLSVTEIHEQMYLTGLTSSLSSGLWIGLNS




LSVRSGWQWAGGSPFRYLNWLPGSPSSEPGKSCVSLNPGKNAKW




ENLECVQKLGYICKKGNNTLNPFIIPSASDVPTGCPNQWWPYAGH




CYRIHREEKKIQKYALQACRKEGGDLASIHSIEEFDFIFSQLGYEPN




DELWIGLNDIKIQMYFEWSDGTPVTFTKWLPGEPSHENNRQEDCV




VMKGKDGYWADRACEQPLGYICKMVSQSHAVVPEGADKGCRK




GWKRHGFYCYLIGSTLSTFTDANHTCTNEKAYLTTVEDRYEQAF




LTSLVGLRPEKYFWTGLSDVQNKGTFRWTVDEQVQFTHWNADM




PGRKAGCVAMKTGVAGGLWDVLSCEEKAKFVCKHWAEGVTRP




PEPTTTPEPKCPENWGTTSKTSMCFKLYAKGKHEKKTWFESRDFC




KAIGGELASIKSKDEQQVIWRLITSSGSYHELFWLGLTYGSPSEGF




TWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPGMSWNDINC




EHLNNWICQIQKGKTLLPEPTPAPQDNPPVTADGWVIYKDYQYYF




SKEKETMDNARAFCKKNFGDLATIKSESEKKFLWKYINKNGGQS




PYFIGMLISMDKKFIWMDGSKVDFVAWATGEPNFANDDENCVT




MYTNSGFWNDINCGYPNNFICQRHNSSINATAMPTTPTTPGGCKE




GWHLYKNKCFKIFGFANEEKKSWQDARQACKGLKGNLVSIENA




QEQAFVTYHMRDSTFNAWTGLNDINAEHMFLWTAGQGVHYTN




WGKGYPGGRRSSLSYEDADCVVVIGGNSREAGTWMDDTCDSKQ




GYICQTQTDPSLPVSPTTTPKDGFVTYGKSSYSLMKLKLPWHEAE




TYCKDHTSLLASILDPYSNAFAWMKMHPFNVPIWIALNSNLTNNE




YTWTDRWRVRYTNWGADEPKLKSACVYMDVDGYWRTSYCNES




FYFLCKKSDEIPATEPPQLPGKCPESEQTAWIPFYGHCYYFESSFTR




SWGQASLECLRMGASLVSIETAAESSFLSYRVEPLKSKTNFWIGM




FRNVEGKWLWLNDNPVSFVNWKTGDPSGERNDCVVLASSSGLW




NNIHCSSYKGFICKMPKIIDPVTTHSSITTKADQRKMDPQPKGSSK




A









REFERENCES


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## Claims

1. A method of in vivo imaging tumor-associated macrophages (TAM) in a subject, the method comprising:
administering to the subject an immunoglobulin single variable domain labeled with a detectable label, wherein the immunoglobulin single variable domain specifically binds to a macrophage mannose receptor selected from the group consisting of SEQ ID NO: 260 and SEQ ID NO: 258, and wherein the immunoglobulin single variable domain comprises a nanobody sequence (VHH) selected from the group consisting of SEQ ID NO: 4, SEQ ID NO: 130, SEQ ID NO: 131, SEQ ID NO: 137, SEQ ID NO: 139, SEQ ID NO: 141, and SEQ ID NO: 144, and
Imaging TAM in the subject to which the labeled immunoglobulin single variable domain binds.

2. The method according to claim 1, the method further comprising:
co-administering to the subject an unlabeled bivalent form of the immunoglobulin single variable domain to block extratumoral binding sites for the immunoglobulin single variable domain in the subject.

3. The method according to claim 2, wherein the imaged TAM are MHC IIlow.

4. The method according to claim 1, wherein the subject is mammalian.

5. The method according to claim 4, wherein the subject is human.

6. The method according to claim 1, wherein the imaged TAM are located in the hypoxic regions of a solid tumor.

7. The method according to claim 1, wherein the imaged TAM are associated with mammary adenocarcinoma cells or lung carcinoma cells.

8. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:4.

9. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:130.

10. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:131.

11. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:137.

12. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:139.

13. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:141.

14. The method according to claim 1, wherein the nanobody sequence comprises SEQ ID NO:144.