# Patent

## Title
Recombinant Gallid herpesvirus 3 (MDV serotype 2) vectors expressing antigens of avian pathogens and uses thereof

## Abstract

The present invention provides recombinant Gallid herpesvirus 3 (MDV-2) vectors that contain and express antigens of avian pathogens, recombinant Gallid herpesvirus 3 (MDV-2) vectors that contain a mutated gC gene, compositions comprising the recombinant Gallid herpesvirus 3 (MDV-2) vectors, polyvalent vaccines comprising the recombinant Gallid herpesvirus 3 (MDV-2) vectors and one or more wild type viruses or recombinant vectors. The present invention further provides methods of vaccination against a variety of avian pathogens and method of producing the recombinant Gallid herpesvirus 3 (MDV-2) vectors.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application claims priority to U.S. provisional application 61/564,877 filed on Nov. 30, 2011 and U.S. provisional application 61/694,957 filed on Aug. 30, 2012.


FIELD OF THE INVENTION
The invention relates to recombinant viral vectors for the insertion and expression of foreign genes for use as safe immunization vehicles to protect against a variety of pathogens. It also relates to multivalent composition or vaccine comprising one or more recombinant viral vectors for protection against a variety of pathogens. The present invention relates to methods of making and using the recombinant viral vectors.
BACKGROUND OF THE INVENTION
Poultry vaccination is widely used to protect poultry flocks against devastating diseases including Newcastle disease (ND), infectious bursal disease (IBD), Marek's disease (MD), infectious bronchitis (IB), infectious laryngotracheitis (ILT) and avian influenza (AI). ND is caused by the avian paramyxovirus 1 (APMV-1) also designated ND virus (NDV) belonging to the Paramyxoviridae family. MD is caused by Gallid herpesvirus 2 (Herpesviridae family) also designated as MD virus serotype 1 (MDV1). IB is caused by IB virus (IBV) belonging to the Coronaviridae family, ILT is caused by Gallid herpesvirus 1 (Herpesviridae family) also designated ILT virus (ILTV) and AI is caused by AI virus (AIV) belonging to the Orthomyxoviridae family.
A number of recombinant avian viral vectors have been proposed with a view to vaccinating birds against these avian pathogens. The viral vectors used comprise avipox viruses, especially fowlpox (EP-A-0,517,292), Marek's virus, such as serotypes 2 and 3 (HVT) (WO-A-87/04463), or alternatively the ITLV, NDV and avian adenovirus. When some of these recombinant avian viral vectors were used for vaccination, they display variable levels of protection.
Several recombinant herpesvirus of turkeys (HVT, also designated Meleagrid herpesvirus 1 or MDV serotype 3) vectors expressing antigens from various pathogens (U.S. Pat. Nos. 5,980,906, 5,853,733, 6,183,753, 5,187,087) including IBDV, NDV, ILTV and AIV have been developed and licensed. Of particular interest is a HVT vector-expressing IBDV VP2 protective gene that has shown clear advantages over classical IBD vaccines (Bublot et al J. Comp. Path. 2007, Vol. 137, S81-S84). Other HVT vectors of interest are those expressing either NDV (Morgan et al 1992, Avian dis. 36, 858-70) or ILTV (Johnson et al, 2010 Avian Dis 54, 1251-1259) protective gene(s). One of the practical problems of using several HVT-based recombinant vaccines together is their interference. Lower protection is induced at least against one of the disease when two HVT recombinants expressing different antigens are mixed (Rudolf Heine 2011; Issues of the Poultry Recombinant Viral Vector Vaccines which May Cause an Effect on the Economic Benefits of those Vaccines; paper presented at the XVII World Veterinary Poultry Association (WVPA) Congress in Cancun, Mexico, Aug. 14-18, 2011; Slacum G, Hein R. and Lynch P., 2009, The compatibility of HVT recombinants with other Marek's disease vaccines, 58th Western Poultry Disease Conference, Sacramento, Calif., USA, March 23-25, p 84).
The combination of HVT and SB-1, a Gallid herpesvirus 3 (MDV serotype 2 or MDV-2) vaccine strain, has shown a synergistic effect on MD protection (Witter and Lee, 1984, Avian Pathology 13, 75-92). To address the interference problem, it is of interest to evaluate the SB-1 virus as a vaccine vector to express protective antigen(s) that could be compatible with HVT vector and improve MD protection.
The SB-1 genome was cloned and characterized in bacterial artificial chromosome (BAC) (Petherbridge, et al., J. Virol. Methods 158, 11-17, 2009; Singh et al., Research in Veterinary Science 89, 140-145, 2010). The MDV2 SB-1 sequence was recently obtained and analyzed (Spatz and Schat, Virus Gene 42, 331-338, 2011). A glycoprotein E deletion of SB-1 virus was described by Petherbridge et al. (J. Virol. Methods 158, 11-17, 2009). However, no research has been reported using SB-1 as a viral vector expressing foreign protective genes.
It has been shown that both UL13 protein kinase and glycoprotein C (UL44) genes individually are essential for horizontal transmission of MDV in chickens (Jarosinski, et al., J. of Virology 81, 10575-10587, 2007; Jarosinski, et al., J. of Virology 84, 7911-7916, 2010).
Considering the potential effect of animal pathogens, such as NDV and IBDV on veterinary public health and the economy, efficient methods of preventing infection and protecting animals are needed. There is a need for a solution of combined effective vector vaccines and a suitable method for making the vaccine that could alleviate the problem of interference observed between 2 HVT-based vector vaccines.
SUMMARY OF THE INVENTION
The present invention demonstrated for the first time a recombinant Gallid Herpesvirus-3 (MDV-2) viral vector protecting against a poultry pathogen beyond Marek's disease virus.
The present invention showed surprising result when multivalent vaccines were used to protect animals against a variety of avian pathogens.
The present invention relates to a recombinant Gallid Herpesvirus-3 (MDV-2) vector comprising one or more heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen. The present invention further relates to a recombinant Gallid Herpesvirus-3 (MDV-2) vector comprising a mutated glycoprotein C (gC) gene.
The present invention provides a composition or vaccine comprising one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors comprising one or more heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen. The present invention further provides a composition for vaccine comprising one or more Gallid Herpesvirus-3 (MDV-2) vectors comprising a mutated glycoprotein C (gC) gene.
The present invention provides a polyvalent composition or vaccine comprising: i) a recombinant Gallid Herpesvirus-3 (MDV-2) vector comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen, or comprising a mutated glycoprotein C (gC) gene; and ii) at least one of: a recombinant HVT vector (or MDV-3 or Meleagrid herpesvirus-1) comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; or wild type HVT (MDV-3); or recombinant MDV serotype 1 vector (i.e., MDV-1, Gallid herpesvirus-2) comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; or any wild type MDV-1.
The present invention relates to a method of vaccinating an animal, or inducing an immunogenic or protective response in an animal, comprising at least one administration of the composition or vector of the present invention.
The present invention further provides specific insertion loci for the introduction of one or more isolated polynucleotide into nonessential regions of the SB-1 genome.



BRIEF DESCRIPTION OF THE DRAWINGS
The following detailed description, given by way of example, and which is not intended to limit the invention to specific embodiments described, may be understood in conjunction with the accompanying figures, incorporated herein by reference, in which:
FIG. 1 is a table showing the SEQ ID NO assigned to each DNA and protein sequence.
FIG. 2 depicts a schematic diagram of SB-1 genome organization.
FIG. 3 depicts the immunofluorescent staining of recombinant vSB1-004 virus expressing NDV-F protein.
FIG. 4 depicts the schematic representation of primer binding sites.
FIG. 5 shows the PCR results of identifying vSB1-004.
FIG. 6 shows the immunofluorescent staining of recombinant vSB1-006 virus expressing NDV-F protein.
FIG. 7 depicts the schematic representation of primer binding sites on vSB1-006.
FIG. 8 shows the PCR results of vSB1-006.
FIG. 9 depicts the immunofluorescent staining of recombinant SB1-007 virus expressing NDV-F protein.
FIG. 10 depicts the schematic diagram of primer location on pSB1 44 cds SVOptF donor plasmid.
FIG. 11 shows the PCR results of vSB1-007.
FIG. 12 depicts the immunofluorescent staining of recombinant SB1-008 virus expressing NDV-F protein.
FIG. 13 depicts the schematic representation of primer binding sites.
FIG. 14 shows the PCR results of vSB1-008.
FIG. 15 depicts the Western blot analysis of immunoprecipitated sample from vSB1-009 infected cells.
FIG. 16 depicts the Immunoprecipitation and Western Blot of vHVT114.
FIG. 17 depicts the clinical analysis (percentage of birds shedding challenge virus) of the recombinants against CA02 and ZJ1 NDV challenge.
FIG. 18 depicts the clinical analysis (oropharyngeal shedding) of the recombinants against NDV challenge.
FIGS. 19A-19F depict the DNA sequence alignment of NDV-F genes. FIG. 19G shows the sequence identity percentage.
FIGS. 20A-20B depict the DNA sequence alignment between SEQ ID NO:3 and SEQ ID NO:4 (AY337464.1) highlighting the differences at nucleotide level. FIGS. 21A-21C depict protein sequence alignment of NDV-F and the sequence identity percentage. FIG. 22 depicts the protein sequence alignment of IBDV VP2 and the sequence identity percentage. FIGS. 23A-23C depict DNA sequence alignment of IBDV VP2 genes and the sequence identity percentage. FIG. 24 depicts the protein sequence alignment between SEQ ID NO:2 and SEQ ID NO:5 (AAP97877.1) highlighting the differences at amino acid level. FIG. 25 depicts the protein sequence alignment between SEQ ID NO:2 and SEQ ID NO:9 highlighting the differences at amino acid level.



DETAILED DESCRIPTION OF THE INVENTION
It is noted that in this disclosure and particularly in the claims, terms such as “comprises”, “comprised”, “comprising” and the like can have the meaning attributed to it in U.S. Patent law; e.g., they can mean “includes”, “included”, “including”, and the like; and that terms such as “consisting essentially of” and “consists essentially of” have the meaning ascribed to them in U.S. Patent law, e.g., they allow for elements not explicitly recited, but exclude elements that are found in the prior art or that affect a basic or novel characteristic of the invention.
Unless otherwise noted, technical terms are used according to conventional usage. Definitions of common terms in molecular biology may be found in Benjamin Lewin, Genes V. published by Oxford University Press, 1994 (ISBN 0-19-854287-9); Kendrew et al. (eds.), The Encyclopedia of Molecular Biology, published by Blackwell Science Ltd., 1994 (ISBN 0-632-02182-9); and Robert A. Meyers (ed.), Molecular Biology and Biotechnology: a Comprehensive Desk Reference, published by VCH Publishers, Inc., 1995 (ISBN 1-56081-569-8). The singular terms “a,” “an,” and “the” include plural referents unless context clearly indicates otherwise. Similarly, the word “or” is intended to include “and” unless the context clearly indicate otherwise. The word “or” means any one member of a particular list and also includes any combination of members of that list.
The term “animal” is used herein to include all mammals, birds and fish. The animal as used herein may be selected from the group consisting of equine (e.g., horse), canine (e.g., dogs, wolves, foxes, coyotes, jackals), feline (e.g., lions, tigers, domestic cats, wild cats, other big cats, and other felines including cheetahs and lynx), bovine (e.g., cattle), porcine (e.g., pig), ovine (e.g., sheep, goats, lamas, bisons), avian (e.g., chicken, duck, goose, turkey, quail, pheasant, parrot, finches, hawk, crow, ostrich, emu and cassowary), primate (e.g., prosimian, tarsier, monkey, gibbon, ape), humans, and fish. The term “animal” also includes an individual animal in all stages of development, including embryonic and fetal stages.
The terms “polypeptide” and “protein” are used interchangeably herein to refer to a polymer of consecutive amino acid residues.
The term “nucleic acid”, “nucleotide”, and “polynucleotide” are used interchangeably and refer to RNA, DNA, cDNA, or cRNA and derivatives thereof, such as those containing modified backbones. It should be appreciated that the invention provides polynucleotides comprising sequences complementary to those described herein. The “polynucleotide” contemplated in the present invention includes both the forward strand (5′ to 3′) and reverse complementary strand (3′ to 5′). Polynucleotides according to the invention can be prepared in different ways (e.g. by chemical synthesis, by gene cloning etc.) and can take various forms (e.g. linear or branched, single or double stranded, or a hybrid thereof, primers, probes etc.).
The term “genomic DNA”, or “genome” is used interchangeably and refers to the heritable genetic information of a host organism. The genomic DNA comprises the DNA of the nucleus (also referred to as chromosomal DNA) but also the DNA of the plastids (e.g., chloroplasts) and other cellular organelles (e.g., mitochondria). The genomic DNA or genome contemplated in the present invention also refers to the RNA of a virus. The RNA may be a positive strand or a negative strand RNA. The term “genomic DNA” contemplated in the present invention includes the genomic DNA containing sequences complementary to those described herein. The term “genomic DNA” also refers to messenger RNA (mRNA), complementary DNA (cDNA), and complementary RNA (cRNA).
The term “gene” is used broadly to refer to any segment of polynucleotide associated with a biological function. Thus, genes or polynucleotides include introns and exons as in genomic sequence, or just the coding sequences as in cDNAs, such as an open reading frame (ORF), starting from the start codon (methionine codon) and ending with a termination signal (stop codon). Genes and polynucleotides can also include regions that regulate their expression, such as transcription initiation, translation and transcription termination. Thus, also included are promoters and ribosome binding regions (in general these regulatory elements lie approximately between 60 and 250 nucleotides upstream of the start codon of the coding sequence or gene; Doree S M et al.; Pandher K et al.; Chung J Y et al.), transcription terminators (in general the terminator is located within approximately 50 nucleotides downstream of the stop codon of the coding sequence or gene; Ward C K et al.). Gene or polynucleotide also refers to a nucleic acid fragment that expresses mRNA or functional RNA, or encodes a specific protein, and which includes regulatory sequences.
The term “heterologous DNA” as used herein refers to the DNA derived from a different organism, such as a different cell type or a different species from the recipient. The term also refers to a DNA or fragment thereof on the same genome of the host DNA wherein the heterologous DNA is inserted into a region of the genome which is different from its original location.
As used herein, the term “antigen” or “immunogen” means a substance that induces a specific immune response in a host animal. The antigen may comprise a whole organism, killed, attenuated or live; a subunit or portion of an organism; a recombinant vector containing an insert with immunogenic properties; a piece or fragment of DNA capable of inducing an immune response upon presentation to a host animal; a polypeptide, an epitope, a hapten, or any combination thereof. Alternately, the immunogen or antigen may comprise a toxin or antitoxin.
The term “immunogenic protein or peptide” as used herein includes polypeptides that are immunologically active in the sense that once administered to the host, it is able to evoke an immune response of the humoral and/or cellular type directed against the protein. Preferably the protein fragment is such that it has substantially the same immunological activity as the total protein. Thus, a protein fragment according to the invention comprises or consists essentially of or consists of at least one epitope or antigenic determinant. An “immunogenic” protein or polypeptide, as used herein, includes the full-length sequence of the protein, analogs thereof, or immunogenic fragments thereof. By “immunogenic fragment” is meant a fragment of a protein which includes one or more epitopes and thus elicits the immunological response described above. Such fragments can be identified using any number of epitope mapping techniques, well known in the art. See, e.g., Epitope Mapping Protocols in Methods in Molecular Biology, Vol. 66 (Glenn E. Morris, Ed., 1996). For example, linear epitopes may be determined by e.g., concurrently synthesizing large numbers of peptides on solid supports, the peptides corresponding to portions of the protein molecule, and reacting the peptides with antibodies while the peptides are still attached to the supports. Such techniques are known in the art and described in, e.g., U.S. Pat. No. 4,708,871. Similarly, conformational epitopes are readily identified by determining spatial conformation of amino acids such as by, e.g., x-ray crystallography and 2-dimensional nuclear magnetic resonance. See, e.g., Epitope Mapping Protocols, supra.
The term “immunogenic protein or peptide” further contemplates deletions, additions and substitutions to the sequence, so long as the polypeptide functions to produce an immunological response as defined herein. The term “conservative variation” denotes the replacement of an amino acid residue by another biologically similar residue, or the replacement of a nucleotide in a nucleic acid sequence such that the encoded amino acid residue does not change or is another biologically similar residue. In this regard, particularly preferred substitutions will generally be conservative in nature, i.e., those substitutions that take place within a family of amino acids. For example, amino acids are generally divided into four families: (1) acidic—aspartate and glutamate; (2) basic—lysine, arginine, histidine; (3) non-polar—alanine, valine, leucine, isoleucine, proline, phenylalanine, methionine, tryptophan; and (4) uncharged polar—glycine, asparagine, glutamine, cysteine, serine, threonine, tyrosine. Phenylalanine, tryptophan, and tyrosine are sometimes classified as aromatic amino acids. Examples of conservative variations include the substitution of one hydrophobic residue such as isoleucine, valine, leucine or methionine for another hydrophobic residue, or the substitution of one polar residue for another polar residue, such as the substitution of arginine for lysine, glutamic acid for aspartic acid, or glutamine for asparagine, and the like; or a similar conservative replacement of an amino acid with a structurally related amino acid that will not have a major effect on the biological activity. Proteins having substantially the same amino acid sequence as the reference molecule but possessing minor amino acid substitutions that do not substantially affect the immunogenicity of the protein are, therefore, within the definition of the reference polypeptide. All of the polypeptides produced by these modifications are included herein. The term “conservative variation” also includes the use of a substituted amino acid in place of an unsubstituted parent amino acid provided that antibodies raised to the substituted polypeptide also immunoreact with the unsubstituted polypeptide.
The term “epitope” refers to the site on an antigen or hapten to which specific B cells and/or T cells respond. The term is also used interchangeably with “antigenic determinant” or “antigenic determinant site”. Antibodies that recognize the same epitope can be identified in a simple immunoassay showing the ability of one antibody to block the binding of another antibody to a target antigen.
An “immunological response” to a composition or vaccine is the development in the host of a cellular and/or antibody-mediated immune response to a composition or vaccine of interest. Usually, an “immunological response” includes but is not limited to one or more of the following effects: the production of antibodies, B cells, helper T cells, and/or cytotoxic T cells, directed specifically to an antigen or antigens included in the composition or vaccine of interest. Preferably, the host will display either a therapeutic or protective immunological response such that resistance to new infection will be enhanced and/or the clinical severity of the disease reduced. Such protection will be demonstrated by either a reduction or lack of symptoms normally displayed by an infected host, a quicker recovery time and/or a lowered viral titer in the infected host.
The terms “recombinant” and “genetically modified” are used interchangeably and refer to any modification, alteration or engineering of a polynucleotide or protein in its native form or structure, or any modification, alteration or engineering of a polynucleotide or protein in its native environment or surrounding. The modification, alteration or engineering of a polynucleotide or protein may include, but is not limited to, deletion of one or more nucleotides or amino acids, deletion of an entire gene, codon-optimization of a gene, conservative substitution of amino acids, insertion of one or more heterologous polynucleotides.
The terms “polyvalent vaccine or composition”, “combination or combo vaccine or composition” and “multivalent vaccine or composition” are used interchangeably to refer to a composition or vaccine containing more than one composition or vaccines. The polyvalent vaccine or composition may contain two, three, four or more compositions or vaccines. The polyvalent vaccine or composition may comprise recombinant viral vectors, active or attenuated or killed wild-type viruses, or a mixture of recombinant viral vectors and wild-type viruses in active or attenuated or killed forms.
One embodiment of the present invention provides a recombinant Gallid herpesvirus 3 (MDV-2) vector that comprises a mutated Glycoprotein C (gC or UL44) gene. The term “mutated gC gene” refers to the gC gene of Gallid herpesvirus 3 (MDV-2) that is altered or engineered which results in a non-functional gC protein upon expression. The alteration or engineering of the gC gene includes mutation or deletion of a segment of the gC gene which is essential for the expression of a functional gC protein. The term “mutated gC gene” also includes deletion of the entire gC gene of Gallid herpesvirus 3 (MDV-2) wherein gC protein is not expressed. Another embodiment of the present invention provides a recombinant Gallid herpesvirus 3 (MDV-2) wherein the Glycoprotein C (gC) gene in the native (wild-type) Gallid herpesvirus 3 (MDV-2) genome encoding the gC protein is deleted. The term “Glycoprotein C (gC) gene” includes any gene or polynucleotide that encodes the Glycoprotein C (gC) of Gallid herpesvirus 3 (MDV-2), and homologs, fragments or variants thereof. The gC gene may encode a gC protein having at least 75%, 80%, 85%, 90%, 95%, 95%, 96%, 97%, 98%, 99%, 99.1%, 99.2%, 99.3%, 99.4%, 99.5%, 99.6%, 99.7%, 99.8% or 99.9% sequence identity to SEQ ID NO: 35, or a variant thereof. The gC gene having at least 75%, 80%, 85%, 90%, 95%, 95%, 96%, 97%, 98%, 99%, 99.1%, 99.2%, 99.3%, 99.4%, 99.5%, 99.6%, 99.7%, 99.8% or 99.9% sequence identity to SEQ ID NO:34 is also encompassed in the present invention.
Another embodiment of the invention provides a recombinant Gallid herpesvirus 3 (MDV-2) viral vector comprising one or more heterologous polynucleotides coding for and expressing at least one antigen or polypeptide of an avian pathogen. The Gallid herpesvirus 3 (MDV-2) strains used for the recombinant viral vector may be any SB-1 strains, including, but not limited to, the commercial Marek's Disease Vaccine (SB-1 vaccine) (Merial Select Inc., Gainesville, Ga. 30503, USA), the SB-1 strain having the genome sequence as defined by GenBank Accession Number HQ840738.1. The Gallid herpesvirus 3 (MDV-2) strains used for the recombinant viral vector may be any other Gallid herpesvirus 3 isolate including the HPRS24 strain having the genome sequence as defined by GenBank Accession Number AB049735.1, or the HPRS24 strain having the genome sequence as defined by GenBank Accession Number NC—002577.1. The genomes of HPRS24 and SB-1 share 98.4% sequence identity (Spatz and Schat, 2011; Virus Gene 42, 331-338). The Gallid herpesvirus 3 (MDV-2) strains used for the recombinant viral vector may be the 301B/1 isolate described by Witter (1987 Avian Dis 31, 752-765) or by Witter et al. (1987 Avian Dis 31, 829-840). The Gallid herpesvirus 3 (MDV-2) strains may be any Gallid herpesvirus 3 (MDV-2) strains comprising the genome sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% sequence identity to the sequence as defined in GenBank Accession Number HQ840738.1 (SEQ ID NO:14), AB049735.1, or NC—002577.1.
The genes coding for antigen or polypeptide may be those coding for Newcastle Disease Virus fusion protein (NDV-F), Newcastle Disease Virus hemagglutinin neuraminidase (NDV-HN), Marek's Disease Virus glycoprotein C (gC), Marek's Disease Virus glycoprotein B (gB), Marek's Disease Virus glycoprotein E (gE), Marek's Disease Virus glycoprotein I (gI), Marek's Disease Virus glycoprotein H (gH) or Marek's Disease Virus glycoprotein L (gL), IBDV VP2, IBDV VPX, IBDV VP3, IBDV VP4, ILTV glycoprotein B, ILTV glycoprotein I, ILTV UL32, ILTV glycoprotein D, ILTV glycoprotein E, ILTV glycoprotein C, influenza hemaglutinin (HA), influenza neuraminidase (NA), protective genes derived from Mycoplasma gallisepticum (MG), or Mycoplasma synoviae (MS), or combinations thereof. The antigen or polypeptide may be any antigen from the poultry pathogen selected form the group consisting of avian encephalomyelitis virus, avian reovirus, avian paramyxovirus, avian metapneumovirus, avian influenza virus, avian adenovirus, fowl pox virus, avian coronavirus, avian rotavirus, chick anemia virus, avian astrovirus, avian parvovirus, coccidiosis (Eimeria sp.), Campylobacter sp., Salmonella sp., Pasteurella sp., Avibacterium sp., Mycoplasma gallisepticum, Mycoplasma synoviae, Clostridium sp., and E. coli. 
Moreover, homologs of aforementioned antigen or polynucleotides are intended to be within the scope of the present invention. As used herein, the term “homologs” includes orthologs, analogs and paralogs. The term “analogs” refers to two polynucleotides or polypeptides that have the same or similar function, but that have evolved separately in unrelated organisms. The term “orthologs” refers to two polynucleotides or polypeptides from different species, but that have evolved from a common ancestral gene by speciation. Normally, orthologs encode polypeptides having the same or similar functions. The term “paralogs” refers to two polynucleotides or polypeptides that are related by duplication within a genome. Paralogs usually have different functions, but these functions may be related. Analogs, orthologs, and paralogs of a wild-type polypeptide can differ from the wild-type polypeptide by post-translational modifications, by amino acid sequence differences, or by both. In particular, homologs of the invention will generally exhibit at least 80-85%, 85-90%, 90-95%, or 95%, 96%, 97%, 98%, 99% sequence identity, with all or part of the polynucleotide or polypeptide sequences of antigens described above, and will exhibit a similar function.
In one embodiment, the present invention provides a recombinant Gallid Herpesvirus-3 (MDV-2) viral vector comprising one, two or more heterologous polynucleotides coding for and expressing the NDV-F antigen or polypeptide. In one aspect of the embodiment, the NDV-F antigen or polypeptide has at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% sequence identity to a polypeptide having the sequence as set forth in SEQ ID NO:2, 9, 50, 52, or 54, or a conservative variant, an allelic variant, a homolog or an immunogenic fragment comprising at least eight or at east ten consecutive amino acids of one of these polypeptides, or a combination of these polypeptides. In another aspect of the embodiment, the heterologous polynucleotide encoding an NDV-F antigen or polypeptide has at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% sequence identity to a polypeptide having the sequence as set forth in SEQ ID NO:2, 9, 50, 52, or 54. In yet another aspect of the embodiment, the heterologous polynucleotide has at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% sequence identity to a polynucleotide having the sequence as set forth in SEQ ID NO:1, 8, 49, 51, or 53.
Variants include allelic variants. The term “allelic variant” refers to a polynucleotide or a polypeptide containing polymorphisms that lead to changes in the amino acid sequences of a protein and that exist within a natural population (e.g., a virus species or variety). Such natural allelic variations can typically result in 1-5% variance in a polynucleotide or a polypeptide. Allelic variants can be identified by sequencing the nucleic acid sequence of interest in a number of different species, which can be readily carried out by using hybridization probes to identify the same gene genetic locus in those species. Any and all such nucleic acid variations and resulting amino acid polymorphisms or variations that are the result of natural allelic variation and that do not alter the functional activity of gene of interest, are intended to be within the scope of the invention.
The term “identity” with respect to sequences can refer to, for example, the number of positions with identical nucleotides or amino acids divided by the number of nucleotides or amino acids in the shorter of the two sequences wherein alignment of the two sequences can be determined in accordance with the Wilbur and Lipman algorithm (Wilbur and Lipman). The sequence identity or sequence similarity of two amino acid sequences, or the sequence identity between two nucleotide sequences can be determined using Vector NTI software package (Invitrogen, 1600 Faraday Ave., Carlsbad, Calif.). When RNA sequences are said to be similar, or have a degree of sequence identity or homology with DNA sequences, thymidine (T) in the DNA sequence is considered equal to uracil (U) in the RNA sequence. Thus, RNA sequences are within the scope of the invention and can be derived from DNA sequences, by thymidine (T) in the DNA sequence being considered equal to uracil (U) in RNA sequences.
The polynucleotides of the disclosure include sequences that are degenerate as a result of the genetic code, e.g., optimized codon usage for a specific host. As used herein, “optimized” refers to a polynucleotide that is genetically engineered to increase its expression in a given species. To provide optimized polynucleotides coding for NDV-F polypeptides, the DNA sequence of the NDV-F protein gene can be modified to 1) comprise codons preferred by highly expressed genes in a particular species; 2) comprise an A+T or G+C content in nucleotide base composition to that substantially found in said species; 3) form an initiation sequence of said species; or 4) eliminate sequences that cause destabilization, inappropriate polyadenylation, degradation and termination of RNA, or that form secondary structure hairpins or RNA splice sites. Increased expression of NDV F protein in said species can be achieved by utilizing the distribution frequency of codon usage in eukaryotes and prokaryotes, or in a particular species. The term “frequency of preferred codon usage” refers to the preference exhibited by a specific host cell in usage of nucleotide codons to specify a given amino acid. There are 20 natural amino acids, most of which are specified by more than one codon. Therefore, all degenerate nucleotide sequences are included in the disclosure as long as the amino acid sequence of the NDV-F polypeptide encoded by the nucleotide sequence is functionally unchanged.
In another embodiment, the present invention provides a method for producing a recombinant Gallid Herpesvirus-3 or SB-1 viral vector comprising the introduction into the SB-1 genome of one, two or more isolated polynucleotides in a nonessential region of the SB-1 genome. In yet another embodiment, the present invention provides a method for producing a recombinant Gallid Herpesvirus-3 or SB-1 viral vector comprising the steps of altering, engineering, or deleting the gC gene from the SB-1 genome. The term “nonessential region” refers to a region of a virus genome which is not essential for replication and propagation of the virus in tissue culture or in chickens. Any nonessential region or portion thereof can be deleted from the SB-1 genome or a foreign sequence can be inserted in it, and the viability and stability of the recombinant Gallid Herpesvirus-3 or SB-1 vector resulting from the deletion or insertion can be used to ascertain whether a deleted region or portion thereof is indeed nonessential. In one aspect of the embodiment, the non-essential regions are located in the unique long (UL) and unique short (US) regions of the SB-1 genome (see Spatz et al., Virus Genes 42:331-338, 2011). The UL region of SB-1 is about 109,744 bp to about 109,932 bp in length and may extend from positions 12,209 to 121,952 of SEQ ID NO:14 (GenBank accession No, HQ840738.1) or equivalent positions of other SB1-genomes, for example, from 11,826 bp to 121,757 bp of HPRS24 genome. The US region of SB-1 is about 12,109 bp to about 12,910 bp in length and may extend from positions 143,514 to 156,423 of SEQ ID NO:14 (GenBank accession No, HQ840738.1) or equivalent positions of other SB1-genomes, for example from 142,681 bp to 154,789 bp of HPRS24 genome (Spatz et al., 2011). In one aspect of the embodiment, the non-essential region is between ORF of UL55 and ORF of LORF5 in the unique long (UL) region of SB-1. In another aspect, the polynucleotide is inserted into or to replace SB-1 glycoprotein C gene (also designated UL44). The use of the gC locus may allow the generation of recombinant virus unable to produce a functional gC protein and unable to be transmitted horizontally. In yet another embodiment, the nonessential region may be in the intergenic regions between UL7 and UL8, between UL 21 and UL22, between UL40 and UL41, between UL50 and UL51, between UL54 and LORF4, between US10 and SORF4, or within the UL43, US2, US10 or US6 (coding for gD) gene (see GenBank accession No, HQ840738.1). In yet another embodiment, the nonessential regions may be in the region of nucleotide positions 118057-118306 (intergenic UL55-LORF5), 98595-100031 (gC or UL44), 25983-26038 (intergenic UL7-UL8), 49865-50033 (intergenic UL21-UL22), 75880-75948 (intergenic UL35-UL36), 93928-93990 (intergenic UL40-UL41), 109777-109847 (intergenic UL50-UL51), 116466-116571 (intergenic UL54-LORF4), 146548-146697 (intergenic US10-SORF4), 97141-98385 (UL43), 147857-148672 (US2), 145853.146548 (US10) or 150322-151479 (gD or US6) of SEQ ID NO:14.
Construction of recombinant virus is well known in the art as described in, e.g., U.S. Pat. Nos. 4,769,330, 4,722,848, 4,603, 112, 5,174, 993, and 5,756,103, 6,719,979. Specifically, a recombinant Gallid Herpesvirus-3 (MDV-2) viral vector may be constructed in two steps. First, the Gallid Herpesvirus-3 (MDV-2) or SB-1 genomic regions flanking the locus of insertion are cloned into an E. coli plasmid construct; unique(s) restriction site(s) is (are) placed between the two flanking regions (insertion plasmid) in order to allow the insertion of the donor expression cassette DNA. Separately, the cDNA or DNA gene sequence to be inserted is preceded by a promoter region (gene start region) and a terminator (or poly-adenylation, polyA) sequence which is specific for the Gallid Herpesvirus-3 (MDV-2) or SB-1 vector and/or eukaryotic cells. The whole expression cassette (promoter-foreign gene-poly-A) is then cloned into the unique(s) restriction site(s) of the insertion plasmid to construct the “donor plasmid” which contains the expression cassette flanked by Gallid Herpesvirus-3 (MDV-2) or SB-1 “arms” flanking the insertion locus. The resulting donor plasmid construct is then amplified by growth within E. coli bacteria and plasmid DNA is extracted. This plasmid is then linearized using a restriction enzyme that cut the plasmid backbone (outside the Gallid Herpesvirus-3 (MDV-2) or SB-1 arms and expression cassette). Chicken embryo fibroblasts are then co-transfected with parental Gallid Herpesvirus-3 (MDV-2) or SB-1 DNA and linearized donor plasmid DNA. The resulting virus population is then cloned by multiple limiting dilution steps where viruses expressing the foreign gene are isolated from the non-expressing viral population. Similarly, another foreign cassette can be inserted in another locus of insertion to create a double Gallid Herpesvirus-3 (MDV-2) or SB-1 recombinant expressing two genes. The second cassette can also be inserted into the same locus. The Gallid Herpesvirus-3 (MDV-2) or SB-1 recombinant is produced in primary chicken embryo fibroblasts similarly to the parental Gallid Herpesvirus-3 (MDV-2) or SB-1 MD vaccine. After incubation, infected cells are harvested, mixed with a freezing medium allowing survival of infected cells, and frozen usually in cryovial or glass ampoules and stored in liquid nitrogen.
Successful expression of the inserted cDNA genetic sequence by the modified infectious virus requires two conditions. First, the insertion must be introduced into a region of the genome of the virus in order that the modified virus remains viable. The second condition for expression of inserted cDNA is the presence of a regulatory sequences allowing expression of the gene in the viral background (for instance: promoter, enhancer, donor and acceptor splicing sites and intron, Kozak translation initiation consensus sequence, polyadenylation signals, untranslated sequence elements).
In general, it is advantageous to employ a strong promoter functional in eukaryotic cells. The promoters include, but are not limited to, an immediate early cytomegalovirus (CMV) promoter, guinea pig CMV promoter, an SV40 promoter, Pseudorabies Virus promoters such as that of glycoprotein X promoter, Herpes Simplex Virus-1 such as the alpha 4 promoter, Marek's Disease Viruses (including MDV-1, MDV-2 and HVT) promoters such as those driving glycoproteins gC, gB, gE, or gI expression, Infectious Laryngotracheitis Virus promoters such as those of glycoprotein gB, gE, gI, gD genes, or other herpesvirus promoters. When the insertion locus consists of a SB-1 gene (for instance, gC, gD, US2 or US10 genes), the foreign gene can be inserted into the vector with no additional promoter sequence since the promoter of the deleted gene of the vector will drive the transcription of the inserted foreign gene.
In one embodiment, the present invention relates to a pharmaceutical composition or vaccine comprising one or more recombinant Gallid Herpesvirus-3 (MDV-2) rival vectors of the present invention and a pharmaceutically or veterinarily acceptable carrier, excipient, vehicle or adjuvant. The Gallid herpesvirus 3 (MDV-2) strains used for the recombinant Gallid Herpesvirus-3 viral vector may be any SB-1 strains, the HPSR24 strains, or the 301B/1 strains. The Gallid Herpesvirus-3 (MDV-2) strains may also include those described in Witter et al (Avian Diseases 34, 944-957; 1990), Witter (Avian Pathology 21, 601-614, 1992) and Witter (Avian Pathology 24, 665-678, 1995): 280-5/1, 281MI/1, 287C/1, 298B/1, 301A/1, 401/1, 437A/1, 437B/1, 468A/1, 468A/2, 468B/1, 471B/1, or HN-1/1.
In another embodiment, the present invention provides a composition or vaccine comprising: i) a recombinant Gallid Herpesvirus-3 vector (MDV-2) comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; and ii) at least one of: a recombinant HVT vector (or MDV-3 or Meleagrid Herpesvirus-1) comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; or wild type MDV-3; or recombinant MDV-1 vector (or Gallid herpesvirus-2) comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; or wild type MDV-1. The composition or vaccine may further comprise a pharmaceutically or veterinarily acceptable carrier, excipient, vehicle or adjuvant. This composition may further contain a recombinant fowlpox vector comprising heterologous polynucleotides coding for and expressing at least one antigen of an avian pathogen; or wild type fowlpox.
In one aspect of the embodiment, the composition or vaccine comprises one (or more) recombinant Gallid Herpesvirus-3 (MDV-2) vectors and one or more wild type HVT (MDV-3). In another aspect, the composition or vaccine comprises one (or more) recombinant Gallid Herpesvirus-3 (MDV-2) vectors and one or more recombinant HVT (MDV-3). In another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors and one or more wild type or genetically modified MDV-1. In another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors and one or more recombinant MDV-1. In another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors, one or more wild type HVT (MDV-3) and one or more wild type MDV-1. In another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors, one or more recombinant HVT (MDV-3) and one or more wild type MDV-1. In another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors, one or more wild type HVT (MDV-3) and one or more recombinant MDV-1. In yet another aspect, the composition or vaccine comprises one or more recombinant Gallid Herpesvirus-3 (MDV-2) vectors, one or more recombinant HVT (MDV-3) and one or more recombinant MDV-1. The wild type HVT (MDV-3) or wild type MDV-1 may be live, attenuated or genetically modified. The heterologous polynucleotides in recombinant Gallid Herpesvirus-3 (MDV-2) vectors, recombinant HVT (MDV-3) vectors, and recombinant MDV-1 vectors may encode same or different antigens from the same or different avian pathogens.
The pharmaceutically or veterinarily acceptable carriers or adjuvant or vehicles or excipients are well known to the one skilled in the art. For example, a pharmaceutically or veterinarily acceptable carrier or adjuvant or vehicle or excipient can be Marek's disease vaccine diluent used for MD vaccines. Other pharmaceutically or veterinarily acceptable carrier or adjuvant or vehicle or excipients that can be used for methods of this invention include, but are not limited to, 0.9% NaCl (e.g., saline) solution or a phosphate buffer, poly-(L-glutamate) or polyvinylpyrrolidone. The pharmaceutically or veterinarily acceptable carrier or vehicle or excipients may be any compound or combination of compounds facilitating the administration of the vector (or protein expressed from an inventive vector in vitro), or facilitating transfection or infection and/or improve preservation of the vector (or protein). Doses and dose volumes are herein discussed in the general description and can also be determined by the skilled artisan from this disclosure read in conjunction with the knowledge in the art, without any undue experimentation.
Optionally other compounds may be added as pharmaceutically or veterinarily acceptable carriers or adjuvant or vehicles or excipients, including, but not limited to, alum; CpG oligonucleotides (ODN), in particular ODN 2006, 2007, 2059, or 2135 (Pontarollo R. A. et al., Vet. Immunol. Immunopath, 2002, 84: 43-59; Wernette C. M. et al., Vet. Immunol. Immunopath, 2002, 84: 223-236; Mutwiri G. et al., Vet. Immunol. Immunopath, 2003, 91: 89-103); polyA-polyU, dimethyldioctadecylammonium bromide (DDA) (“Vaccine Design The Subunit and Adjuvant Approach”, edited by Michael F. Powell and Mark J. Newman, Pharmaceutical Biotechnology, 6: p. 03, p. 157); N,N-dioctadecyl-N′,N′-bis(2-hydroxyethyl) propanediamine (such as AVRIDINE®) (Ibid, p. 148); carbomer, chitosan (see U.S. Pat. No. 5,980,912 for example).
The pharmaceutical compositions and vaccines according to the invention may comprise or consist essentially of one or more adjuvants. Suitable adjuvants for use in the practice of the present invention are (1) polymers of acrylic or methacrylic acid, maleic anhydride and alkenyl derivative polymers, (2) immunostimulating sequences (ISS), such as oligodeoxyribonucleotide sequences having one or more non-methylated CpG units (Klinman et al., 1996; WO98/16247), (3) an oil in water emulsion, such as the SPT emulsion described on p 147 of “Vaccine Design, The Subunit and Adjuvant Approach” published by M. Powell, M. Newman, Plenum Press 1995, and the emulsion MF59 described on p 183 of the same work, (4) cation lipids containing a quaternary ammonium salt, e.g., DDA (5) cytokines, (6) aluminum hydroxide or aluminum phosphate, (7) saponin or (8) other adjuvants discussed in any document cited and incorporated by reference into the instant application, or (9) any combinations or mixtures thereof.
Another aspect of the invention relates to a method for inducing an immunological response in an animal against one or more antigens or a protective response in an animal against one or more avian pathogens, which method comprises inoculating the animal at least once with the vaccine or pharmaceutical composition of the present invention. Yet another aspect of the invention relates to a method for inducing an immunological response in an animal to one or more antigens or a protective response in an animal against one or more avian pathogens in a prime-boost administration regimen, which is comprised of at least one primary administration and at least one booster administration using at least one common polypeptide, antigen, epitope or immunogen. The immunological composition or vaccine used in primary administration may be same, may be different in nature from those used as a booster.
The avian pathogens may be Newcastle Disease Virus (NDV), Infectious Bursal Disease Virus (i.e., IBDV or Gumboro Disease virus), Marek's Disease Virus (MDV), Infectious Laryngotracheitis Virus (ILTV), avian encephalomyelitis virus and other picornavirus, avian reovirus, avian paramyxovirus, avian metapneumovirus, avian influenza virus, avian adenovirus, fowl pox virus, avian coronavirus, avian rotavirus, avian parvovirus, avian astrovirus and chick anemia virus, coccidiosis (Eimeria sp.), Campylobacter sp., Salmonella sp., Mycoplasma gallisepticum, Mycoplasma synoviae, Pasteurella sp., Avibacterium sp., E. coli or Clostridium sp.
Usually, one administration of the vaccine is performed either at one day-of-age by the subcutaneous or intramuscular route or in ovo in 17-19 day-old embryo. A second administration can be done within the first 10 days of age. The animals are preferably at least 17-day-embryo or one day old at the time of the first administration.
A variety of administration routes in day-old chicks may be used such as subcutaneously or intramuscularly, intradermally, transdermally. The in ovo vaccination can be performed in the amniotic sac and/or the embryo. Commercially available in ovo and SC administration devices can be used for vaccination.
The invention will now be further described by way of the following non-limiting examples.
EXAMPLES
Construction of DNA inserts, plasmids and recombinant viral vectors was carried out using the standard molecular biology techniques described by J. Sambrook et al. (Molecular Cloning: A Laboratory Manual, 2nd Edition, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y., 1989).
Example 1
Construction of Recombinant vSB1-004 Expressing NDV-F
The aim of the work is to construct a recombinant SB-1 virus in which an expression cassette containing mouse cytomegalovirus (mCMV) promoter, Newcastle disease virus fusion protein (NDV-F), and Simian virus 40 (SV40) poly A tail is inserted into the intergenic site between US10 and SORF4 site of SB-1 virus (Table 1 and FIG. 2).







TABLE 1







Characteristics of vSB1-004













Parental






Name
virus
Promoter
gene
Poly-A
Locus





vSB1-004
SB-1*
mCMV IE
Wt-NDV-F
SV40
SORF4/US10





of VIId





SB-1*: Merial's commercial Marek's Disease Vaccine SB-1(Merial Select Inc., Gainesville, GA 30503, USA). Vaccine Lot# JV505.






A Newcastle disease virus Fusion Protein (NDV-F) corresponding to genotype VIId sequence (SEQ ID NO:2 encoded by SEQ ID NO:3) was chemically synthesized (GenScript, Piscataway, N.J., USA). The F protein cleavage site of this synthetic gene was altered to match with a lentogenic F cleavage site sequence and the resultant NDV-F gene sequence has 99% nucleotide as well as 99% amino acid sequence identity to NDV-F sequence deposited in GenBank under accession number AY337464 (for DNA) and AAP97877.1 (for protein), respectively.
Donor Plasmid SB-1 US10mFwt SbfI Construction
A fragment containing the synthetic NDV-F gene was excised from pUC57 NDV-F VIId wt plasmid (synthesized by GeneScript) using NotI and inserted into the same site of pCD046 plasmid containing mCMV promoter and SV40 polyA tail. The resultant plasmid, pCD046+NDV-F wt was digested with EcoRI and SalI and blunt ended with Klenow. A 3.3 kb fragment was gel extracted and ligated to a SmaI digested and dephosphorylated (CIPed) vector (SB1 US10-SORF4 SbfI pUC57) containing flanking arms. Ligated material was transformed using Top10 Oneshot kit (Invitrogen, CA, USA). Bacterial colonies were grown in LBamp broth, plasmid extracted by using Qiagens MiniSpin Prep kit, and screened for insert orientation using PstI digestion. The correct donor plasmid was designated SB-1 10mFwt SbfI. Large scale cultures were grown and plasmid extraction was done using Qiagens Maxi Prep kit. Transient expression of the maxi preps was verified using Fugene Transfection Reagent in Chicken Embryo Fibroblast Cells (CEF's) and chicken polyclonal sera against NDV.
Recombinant Generation
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using SB-1 US10 mFwt SbfI donor plasmid and viral DNA isolated from vaccine strain of SB-1 virus. Co-electroporation was performed using 1×107 2° CEF in 300 μl Opti-MEM and shocked at 150 volts with 950 capacitance in a 2 mm electroporation cuvette. The transfected cells were seeded into 96-well plate and incubated for 5-7 days. The cells grown in the 96-well plate were then treated with trypsin and transferred into two “sisters” 96-well plates and incubated for 5 more days. One set of 96-well plates was used for IFA using chicken polyclonal sera against NDV-F to identify positive wells containing recombinants and another set of 96-well plates was used for recovering the infected cells from the positive wells.
The recombinant viral purification methods were performed first by 96-well plate duplication and IFA selection for the wells containing the most IFA positive plaques with the least amount of IFA negative plaques. Wells matching those criteria were then harvested and adjusted to 1 ml in DMEM+2% FBS. From the 1 ml stock, 5-20 μl (depending on the number of visible plaques) were removed and mixed with 1×107 CEFs in 10 ml DMEM+2% FBS and aliquoted onto a new 96-well plate to have single SB-1 plaques per well. The 96-well plates were duplicated after 5 days of incubation and wells that contained plaques were tested for the presence of recombinant SB-1 and absence of parental virus by IFA and PCR. Again the wells that appeared to have more recombinant virus, by comparing the PCR banding results, were harvested and adjusted to 1 ml and aliquoted onto new 96-well plates. After three to five rounds of purification of virus infected cells, recombinant SB-1 expressing NDV-F protein was isolated and the purity of the recombinant virus was tested by IFA and PCR to confirm the absence of parental virus. Selected recombinant virus was then passed from one well of a 96-well plate (P0) to 2×T-25 flasks (P1), then 2×T-75 flasks (P2), 2×T-175 flasks (P3), and finally 2×850 cm2 roller bottles (pre-MSV stock or P4). Vials with 2 ml aliquot were stored in liquid nitrogen. Titrations were performed in triplicate on CEFs and a titer of 1×105 pfu/ml was obtained for SB1-004.
Expression Analysis
For immunofluorescence testing, the P3 material was diluted 1:100 in media. Approximately 50 μA of the diluted virus was added to 10 ml of DMEM+2% FBS with 1×107 CEFs and then aliquoted onto a 96 well plate (100 μl/well). The plates were incubated for 5 days at 37° C.+5% CO2 until viral plaques were visible. The plates were fixed with 95% ice-cold acetone for three minutes and washed three times with PBS. Chicken anti-sera against Newcastle Disease Virus (lot#C0139, Charles Rivers Laboratory) at 1:1000 was added and the plates were incubated at 37° C. for 1 hour. After one hour incubation, the plates were washed three times with PBS and FITC anti-chicken (cat# F8888, Sigma) was added at 1:500. Again the plates were incubated at 37° C. for 1 hour. After one hour incubation the cells were rinsed three times with PBS and visualized with a fluorescent microscope using fluorescein isothiocyanate (FITC) filter. All examined plaques of vSB1-004 were found to express NDV-F protein (FIG. 3).
Analysis of Recombinant by PCR
DNA was extracted from a stock virus by phenol/chloroform extraction, ethanol precipitated, and resuspended in 20 mM HEPES. PCR primers were designed to specifically identify the NDV-F VIId gene, the promoter, the SV40 poly A and the SB-1 flanking arms (see FIG. 4). Primers, specific to HVT (strain FC126), MDV serotype 3 (MB080+MB081) were also included in the analysis to check the purity of the recombinant virus from SB-1 parental virus. PCR was performed using 200 μg of DNA template along with the specified primers pairs.
The PCR reactions with all primer pairs resulted in the expected PCR products and banding patterns. The PCR results demonstrate that recombinant virus vSB1-004 carries the intended expression cassette and the virus stock is free from detectable amounts of parental SB-1 virus (FIG. 5).
The nucleotide sequence of the donor plasmid SB-1 US10mFwt SbfI (SEQ ID NO:41) is shown in FIG. 20.
Based on PCR testing and immunofluorescence analysis, vSB1-004 is a recombinant SB-1 expressing a NDV-F gene under the control of mCMV promoter. Recombinant vector vSB1-004 is free of any detectable parental SB-1 virus or potential HVT contaminant.
Example 2
Construction of Recombinant vSB1-006 Expressing NDV-F
The aim of the work is to construct a recombinant SB-1 virus in which an expression cassette containing SV40 promoter, Newcastle disease virus fusion protein (NDV-F), and synthetic polyA tail is inserted between the UL55 and LORF5 site of SB-1 virus (Table 2).







TABLE 2







Characteristics of vSB1-006













Parental






Name
virus
Promoter
gene
Poly-A
Locus





vSB1-006
SB-1
SV40
Opt-NDV-F
Syn
UL55/





of VIId

LORF5









A Newcastle disease virus Fusion Protein (NDV-F) corresponding to a consensus codon-optimized genotype VIId sequence (SEQ ID NO:2 encoded by SEQ ID NO:1) was chemically synthesized (GeneArt).
Donor Plasmid SB-1 UL55 SV Fopt Syn Tail SbfI Construction
A synthetic SB-1 UL55-LOrf5 SbfI plasmid covering approximately 1 kb sequence on each side of the insertion site (GenScript) was digested with SbfI and dephosphorylated. A synthetic SV OptF syn tail pUC57 plasmid (Genscript) was digested with SbfI and a 2239 base pair fragment was gel extracted and ligated to the SbfI digested vector to create the new SB1 UL55 SVFopt syn tail SbfI donor plasmid.
Recombinant Generation, Expression Analysis and PCR Testing
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid SB1 UL55 SV Fopt syn tail SbfI and viral DNA isolated from vaccine strain of SB-1 virus. Essentially the procedure described in example 1 for vSB1-004 was followed to generate, plaque purify and characterize recombinants by immunofluorescence and PCR.
The nucleotide sequence of the donor plasmid SB1 UL55 SVFopt syn tail SbfI (SEQ ID NO:42) is shown in FIG. 20.
Recombinant Generation and Expression Analyses
Genomic DNA of SB-1 virus was co-electroporated with SB-1 UL55 SV Fopt syn tail SbfI donor plasmid to generate recombinant SB-1 using homologous recombination technique. Recombinant virus was separated from parental SB-1 virus by immunofluorescent positive well selection and PCR screening in multiple rounds of plaque purification. A plaque purified recombinant SB-1 virus expressing the NDV-F protein, designated vSB1-006, was scaled up from tissue culture flasks to 2×850 cm2 roller bottles. After about 72 hrs post infection in roller bottles, the infected CEFs were harvested. Aliquots were frozen in liquid nitrogen containing 10% FBS and 10% DMSO. Titrations were performed in triplicate on CEFs and a titer of 8×105 pfu/ml was obtained for SB1-006.
Immunofluorescence was preformed using chicken anti-sera (lot# C0139, Charles Rivers Laboratories) followed by a FITC labeled anti-chicken IgG (cat#02-24-06, KPL). All examined plaques of vSB1-006 were found to express NDV-F protein (FIG. 6).
PCR Analysis of vSB1-006
Purity of recombinant virus was verified by PCR using primer pairs that are specific to the SB-1 flanking arms, codon-optimized NDV-F VIId, SV40 promoter as well as primer pairs specific to HVT (see FIG. 7). PCR reactions with all primer pairs resulted in the expected PCR products and banding patterns. In addition, there was no evidence of the parental SB-1 virus in vSB1-006 (FIG. 8).
Based on PCR testing and immunofluorescence analysis, it is confirmed that vSB1-006 is a recombinant SB-1 expressing a codon-optimized NDV-F gene under the control of SV40 promoter. Recombinant vector vSB1-006 is free of any detectable amount of parental SB-1 virus and potential HVT contaminant.
Example 3
Construction of Recombinant vSB1-007 Expressing NDV-F
The aim of the work is to construct a recombinant SB-1 virus in which an expression cassette containing SV40 promoter, NDV-F gene corresponding to the F sequence of genotype VIId of NDV is used to replace the coding sequence of glycoprotein C (gC or UL44) of SB-1 virus (Table 3).







TABLE 3







Characteristics of vSB1-007













Parental






Name
virus
Promoter
gene
Poly-A
Locus





vSB1-007
SB-1
SV40
Opt-NDV-F
(endogeneous
gC





of VIId
from gC gene)









A Newcastle disease virus Fusion Protein (NDV-F) corresponding to a consensus codon-optimized genotype VIId sequence (SEQ ID NO:2 encoded by SEQ ID NO:1) was chemically synthesized (GeneArt).
Donor Plasmid pSB1 44 Cds SVOptF Construction
A synthetic pSB1 44 cds plasmid containing flanking arms was generated by gene synthesis (GenScript). The pSB1 44 cds was digested with SbfI, dephosphorylated. Another plasmid named SV-OptF-syn no polyA tail-pUC57 was digested with SbfI and 2.1 kb fragment containing SV40 promoter and NDV-F gene was gel extracted, ligated into the SbfI digested vector and transformed using the Top10 Oneshot kit (Invitrogen). Bacterial colonies were grown in LB-ampicillin media (100 ug/ml), and plasmids were extracted by using Qiagen Mini Spin Prep kit, and screened for insertions by EcoRI and NcoI digestion. The resultant donor plasmid was designated pSB1 44 cds SVOptF.
The synthetic plasmid pSB1 44 cds (SEQ ID NO:36 in FIG. 20) can also be used as a donor plasmid without further modification (without inserting NDV-F expression cassette) to generate a recombinant SB-1 lacking the glycoprotein (gC) gene.
Recombinant Generation and Expression Analyses
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid pSB1 44 cds SVOptF and viral DNA isolated from vaccine strain of SB-1 virus. Essentially the procedure described in example 1 for vSB1-004 was followed to generate, plaque purify and characterize recombinants by immunofluorescence. A plaque purified recombinant SB-1 virus expressing the NDV-F protein, designated vSB1-007, was scaled up from T-25 tissue culture flasks to 10×T-150 cm2 flasks. Infected CEF cells were harvested and aliquots were frozen in liquid nitrogen containing 10% FBS and 10% DMSO. Titrations were performed in triplicate on CEFs and a titer of 7.2×104 pfu/ml was obtained for SB1-007.
Immunofluorescents was performed using chicken anti-sera (lot# C0139, Charles Rivers Laboratories) followed by a FITC labeled anti-chicken IgG (cat#02-24-06, KPL). All examined plaques of vSB1-007 were found to express NDV-F protein (FIG. 9).
PCR Analysis of vSB1-007
Viral DNA was extracted from SB1-007 from P.1 through P.6 by QIA DNeasy Blood & Tissue Kit (Qiagen). PCR primers were designed to specifically identify the presence of NDV F (codon-optimized), the SV40 promoter and the flanking arms of UL44 (see FIG. 10). PCR amplifications were preformed using 200 ng of DNA template along with the specified primer pairs.
Similarly, a standard homologous recombination procedure using synthetic plasmid pSB1 44 cds and viral DNA isolated from vaccine strain of SB-1 virus will generate a recombinant SB-1 in which the coding region of gC gene is deleted. Two PCR primers (SB1 43.F and SB1 45.R, Table 4) will produce a PCR product of 103 nucleotides for a gC-deleted recombinant SB-1 versus a 1540 nucleotides for the parent SB-1 virus.
Purity of recombinant virus was verified by PCR using primer pairs that are specific to the SB-1 flanking arms, codon-optimized NDV-F VIId, SV40 promoter as well as primer pairs (MB080+MB081) specific to HVT. PCR reactions with all primer pairs resulted in the expected PCR products and banding patterns. In addition, there is no evidence of the parental SB-1 virus in vSB1-007 (Tables 4-5 and FIG. 11).







TABLE 4







PCR primers









Primer
SEQ ID NO:
Sequence (5′ to 3′)





SB1 43.F
27
GCTCTCGGAGACGCGGCTCGC


 


SB1 45.R
28
GCTCTTGTAACATCGCGGACG


 


SV40 promoter.F
29
AGCTTGGCTGTGGAATGT


 


Opt F
24
ACTGACAACACCCTACATGGC


 


HVTUS10.FP
30
CCGGCAACATACATAATGTG


 


HVTUS10.RP
31
GGCACTATCCACAGTACG
















TABLE 5







Expected amplicon size









Expected amplicon size (bp)









Primer pairs
SB-1
vSB1-007/pSB1 44 cds SVOptF





SB1 43.F + SB1 45.R
1540
2188


SV40promoterF + SB1 45.R
None
2113


Opt F + SB1 45.R
None
 611


HVTUS10.FP + HVTUS10.RP
None
None









Based on PCR testing and immunofluorescence analysis, it is confirmed that vSB1-007 is a recombinant SB-1 expressing a codon-optimized NDV-F gene under the control of SV40 promoter. The NDV-F expression cassette was successfully used to replace the gC gene of SB1, demonstrating that gC is dispensable for in vitro propagation of SB-1 virus. Recombinant vector vSB1-007 is free of any detectable amount of parental SB-1 virus or HVT.
The nucleotide sequence of the donor plasmid pSB1 44 cds SVOptF (SEQ ID NO:43) is shown in FIG. 20.
Example 4
Construction of Recombinant vSB1-008 Expressing NDV-F
The aim of the work is to construct a recombinant SB-1 virus in which an expression cassette containing SV40 promoter, NDV-F gene corresponding to the F sequence of CA02 strain of NDV, and synthetic polyA tail is inserted between the UL55 and LORF5 site of SB-1 virus (Table 6).







TABLE 6







Characteristics of vSB1-008













Parental






Name
virus
Promoter
gene
Poly-A
Locus





vSB1-008
SB-1
SV40
Opt-NDV-F
Syn
UL55/





of CA02

LORF5









An NDV-F corresponding to a codon-optimized genotype V (CA02 strain) sequence (SEQ ID NO:9 encoded by SEQ ID NO:8) was chemically synthesized (GeneArt). The F protein cleavage site of this synthetic gene was altered to match a lentogenic F cleavage site sequence and the resultant NDV-F gene sequence has 99% amino acid sequence identity to NDV-F sequence deposited in GenBank (ABS84266).
Donor Plasmid SB1 UL55 SV CaFopt Syn Tail SbfI Construction
A synthetic SB-1 UL55-LOrf5 SbfI plasmid (Genscript) containing approximately 1 kb sequence of each side of the insertion site was digested with SbfI and dephosphorylated. A synthetic SV OptF syn tail pUC57 plasmid (Genscript) was digested with SbfI and a 2239 base pair fragment containing syn tail was gel extracted and ligated to the SbfI digested vector to create the new SB1 UL55 SVFopt syn tail SbfI donor plasmid. This donor plasmid was then digested with NotI, CIPed, and a 5196 base pair fragment was gel extracted. A synthetic NDV-F CAO2 CSmut 0813005 pVR101 donor plasmid (GeneArt) was digested with NotI and a 1677 base pair fragment was gel extracted and ligated to the NotI digested and CIPed UL55 vector resulting in donor plasmid SB1 UL55 SV CaFopt syn tail SbfI.
Recombinant Generation and Expression Analysis
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid SB-1 UL55 SV CaFopt syn tail SbfI and viral DNA isolated from vaccine strain of SB-1 virus. Essentially the procedure described in example 1 was followed to generate and characterize recombinants by immunofluorescence and PCR.
Recombinant virus was separated from parental SB-1 virus by immunofluorescent positive well selection and PCR screening in multiple rounds of plaque purification. A plaque purified recombinant SB-1 virus expressing the NDV-F protein, designated vSB1-008, was scaled up from tissue culture flasks to 2×850 cm2 roller bottles. After about 72 hrs post infection in roller bottles, the infected CEFs were harvested. Aliquots were frozen in liquid nitrogen containing 10% FBS and 10% DMSO.
Immunofluorescence was performed using chicken anti-sera (Charles Rivers Laboratories) followed by a FITC labeled anti-chicken IgG (KPL) (FIG. 12).
PCR Analysis of vSB1-008
Purity of recombinant virus was verified by PCR using primer pairs that are specific to the SB-1 flanking arms, codon-optimized NDV-F VIId, SV40 promoter (see FIG. 13) as well as primer pairs (MB080+MB081) specific to HVT, MDV serotype 3. PCR reactions with all primer pairs resulted in the expected PCR products and banding patterns. In addition, there is no evidence of the parental SB-1 virus in vSB1-008 (FIG. 14).
The nucleotide sequence of the donor plasmid SB-1 UL55 CaFopt syn tail SbfI (SEQ ID NO:44) is shown in FIG. 20.
Based on PCR testing and immunofluorescence analysis, it is confirmed that vSB1-008 is a recombinant SB-1 expressing a codon-optimized NDV-F gene under the control of SV40 promoter. Recombinant vector vSB1-008 is free of any detectable parental SB-1 virus or HVT.
Example 5
Construction of Recombinant vSB1-009 and vSB1-010 Expressing NDV-F
The aim of the study is to construct a recombinant SB-1 viral vector vSB1-009 in which an expression cassette containing SV40 promoter and Newcastle disease virus fusion (NDV-F) gene is inserted to replace UL44 coding (gC) sequence of SB-1 and to construct a recombinant SB-1 viral vector vSB1-010 in which an additional expression cassette containing guinea pig CMV promoter and NDV-F gene is inserted in SORF-US2 locus of SB1-009 vector backbone.
Example 5.1
Construction of vSB1-009
A donor plasmid pSB1 44 cds SV FCAopt was constructed containing UL44 flanking arms of SB1 virus, SV40 promoter and NDV F codon optimized gene sequence (SEQ ID NO:8, coding for SEQ ID NO:9) (Table 7).







TABLE 7







Characteristics of vSB1-009













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vSB1-009
SB1
SV40
Opt-NDV-F
(endogeneous
UL44





of CA02
from gC gene)
(gC)









Generation of Recombinant Virus

A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid pSB1 44 cds SV FCAopt and viral DNA isolated from SB-1 virus infected CEFs. Essentially the procedure described in example 1 was followed to generate, plaque purify and characterize recombinants by immunofluorescence.
After two rounds of plaque purification, pure recombinant virus (vSB1-009) was isolated and the purity of vSB1-009 was tested by IFA and PCR to validate the appropriate insertion as well as no remnant parental virus.
PCR Analysis
Viral DNA was extracted from vSB1-009 pre-master seed virus (pre-MSV) stock by QIA DNeasy Blood & Tissue Kit (Qiagen). PCR primers were designed to identify the presence of the NDV F optimized, the NDV F wild type, the SV40 promoter, the mCMV promoter, the UL44 flanking arms of SB-1 virus and HVT virus. PCR amplifications were performed using approximately 200 ng of DNA template along with the primer pairs.
PCR amplification with various primers confirmed that the vSB1-009 has the expected amplification patterns and amplicons.
Expression Analysis
Indirect immunofluorescent assay (IFA) was performed on the vSB1-009 pre-MSV stock to examine the expression of NDV F gene and SB-1 virus antigen. The CEFs that were inoculated with vSB1-009 were fixed with ice-cold 95% acetone for three minutes at room temperature and air-dried for 10 min. The plates were washed with PBS, then two primary antibodies, chicken anti-Newcastle Disease Virus sera (Charles Rivers Laboratories cat#10100641, lot#C0117A) at 1:500 dilution and Y5.9 monoclonal antibody against SB-1 virus (Merial Select, Gainesville, Ga.) at 1:3000 dilution were added and the plates were incubated for 45 min at 37° C. After three washes with PBS, two secondary antibodies, goat anti-chicken IgG-fluorescein (KPL) at 1:500 dilution and donkey anti-mouse IgG-Alexa Fluor 568 (Molecular Probe) at 1:250 dilution were added. The plates were incubated at 37° C. for 45 min and followed by three washes with PBS. The wells were screened for IFA positive plaques with a fluorescent microscope using fluorescein isothiocyanate (FITC) and tetramethylrhodamine isothiocyanate (TRITC)-filters of Nikon Eclipse Ti inverted microscope. Similarly, reactivity of vSB1-009 with NDV F Mab was examined by Dual IFA using anti-MDV serum (Charles River Laboratories (1/300 dilution) and anti-NDV F monoclonal antibody (1/300 dilution) as primary antibody. The goat anti-chicken IgG-fluorescein (KPL) (1:500 dilution) and donkey anti-mouse IgG-Alexa Fluor 568 (Molecular Probe) (1:250 dilution) were used as secondary antibodies. The wells were observed to identify the IFA positive plaques with a fluorescent microscope using FITC- and TRITC-filters of Nikon Eclipse Ti inverted microscope.
IFA results indicate that vSB1-009 expresses the NDV F protein in virus-infected CEF. Over 500 vSB1-009 plaques were counted for NDV F protein expression as well as SB-1 virus specific protein expression with dual IFA. The expression of NDV F protein completely matched with SB-1 virus antigen expression in each virus plaque (Table 8).







TABLE 8







Dual IFA of vSB1-009










Dual IFA plate#1
Dual IFA plate#2



(total 189 plaques)
(total 361 plaques)












Anti-NDV
Anti-SB-1
Anti-NDV
Anti-SB-1



serum positive
Mab positive
serum positive
Mab positive


Virus
plaques
plaques
plaques
plaques





vSB1-009
189
189
361
361









NDV F Mab reactivity was confirmed by Dual IFA. Over 200 vSB1-009 plaques were examined for NDV F Mab reactivity as well as anti-MDV serum reactivity. The reactivity with NDV F Mab completely matched with anti-MDV serum reactivity in each virus plaque (Table 9).







TABLE 9







Reactivity of vSB1-009 with anti-NDV F Mab










Dual IFA (total 254 plaques)













Anti-MDV
Anti-NDV F




serum positive
Mab positive



Virus
plaques
plaques






vSB1-009
254
254









Southern Blot Analysis

Total genomic DNA was extracted from vSB1-009 pre-MSV stock infected CEFs. The genomic DNA of vSB1-009, SB-1 virus (negative control), pSB1 44 cds SV FCA opt donor plasmid were digested at 37° C. with EcoRI, NcoI, and KpnI restriction endonucleases separately. The restriction fragments were separated by a 0.8% agarose gel electrophoresis and transferred onto a positively charged Nylon membrane. After transfer, the membrane was treated with 0.4M NaOH and then neutralized with 2×SSC—HCl buffer. The membrane was then air dried and UV crosslinked.
Following the North2South Chemiluminescent Hybridization and Detection Kit (Thermo Scientific cat#89880) manufacturers' instructions, the membrane was pre-hybridized for 1 hr and then hybridized with the probe at 55° C. for overnight. For hybridization, two probes were used; 1) the SbfI fragment of pSB1 44 cds SV FCA opt as NDV F cassette probe, 2) the SmaI-EcoRI fragment of pUC57 SB1 44 arm (GenScript) as recombination arm probe. After the overnight hybridization, several stringency washes were conducted until the membrane was placed in blocking buffer with the addition of Streptavidin-HRP. After rinsing the membrane of any unbound Streptavidin-HRP, the substrate solution of Luminal and peroxide were added. The membrane was then exposed to X-ray film and the film was developed.
The Southern blot results were as expected based on Vector NTI map analysis. The NDV F cassette (SV40 promoter, NDV-F CA02 codon optimized gene) replaced the UL44 coding sequences of SB-1 virus.
Genomic Analysis
The genomic DNA of vSB1-009 pre-MSV stock was conducted by nucleotide sequence determination of the region of recombination arm as well as inserted gene cassette. Primers were designed and used to amplify the entire NDV-F gene cassette including the recombination arms.
The vSB1-009 sequence (donor plasmid pSB1 44 cds SV FCAopt) containing the recombinant arms, SV40 promoter and NDV F codon-optimized gene was confirmed to be correct as shown in SEQ ID NO:37 (FIG. 20).
Western Blot Analysis
The CEF monolayer was infected with vSB1-009 pre-MSV at MOI  ̃0.1. After a 5-day incubation, the CEFs were pelleted and washed with PBS followed by lysis with IP Lysis/Wash buffer of Pierce Classic IP Kit (Thermo Scientific cat#26146) according to the manufacturers' protocols. The lysate was pre-cleared and incubated with 100 ul of anti-NDV F monoclonal antibody to make the immune complex. The immune complex was captured by Protein A/G Plus Agarose and after removing of the un-bounded immune complex by washing steps, the 50 ul of sample buffer was used to elute under non-reducing conditions. The uninfected CEFs were included as a control. The 20 ul of eluted samples were separated in 10% Bis-Tris gels by electrophoresis. After the electrophoresis, the separated proteins in a gel were transferred onto PVDF membrane. The Protein Detection TMB Western Blot Kit (KPL cat#54-11-50) was used to detect the NDV antigens onto PVDF membrane with chicken anti-NDV serum (Charles River Laboratories Laboratories cat#10100641, lot#C0117A), and goat anti-chicken IgG-peroxidase conjugate (KM, cat#14-24-06) following the manufacturers' protocols.
The NDV F protein expression of vSB1-009 was confirmed by two-step immunodetection. First, the expressed NDV F proteins from vSB1-009 infected CEF lysate were captured by the immunoprecipitation using anti-NDV F monoclonal antibody 001C3. Subsequently Western blot analysis using anti-NDV polyclonal serum (Charles River Laboratories cat#10100641, lot#C0117A) was applied to detect the NDV F protein in the captured samples (NDV F protein-monoclonal antibody complex) (FIG. 15). An approximately 55 kDa protein in vSB1-007 pre-MSV lysates was detected by anti-NDV serum that corresponding the expected size of NDV F1 fusion protein (FIG. 15).
Example 5.2
Construction of vSB1-010
Donor Plasmid SB1US2 gpVIIdwtsyn Construction
Using the plasmid HVT SOrf3-US2 gpVar-Ewt Syn, the gpCMV, Varient E, Syn tail was removed by SbfI digestion. This fragment was ligated into the SB1 US2 donor plasmid. The Varient E gene was cut out by NotI and replaced by NDV-F VIId wt. The synthetic NDV-F VIId wild type gene (SEQ ID NO:3 encoding SEQ ID NO:2) was excised from pUC57 NDV-F VIId wt plasmid (synthesized by GeneScript) using NotI digestion. Ligated material was transformed using Top10 Oneshot kit (cat#C404002, Invitrogen). Bacterial colonies were grown in LBamp broth, plasmid extracted by using Qiagens MiniSpin Prep kit, and screened for insert orientation using NcoI+SalI digestion. The correct donor plasmid was designated pSB1 US2 gpVIIdwt Syn. Table 10.1 shows the features unique to the construct around the expression cassettes, including the respective sequences. Large scale cultures were grown and plasmid extraction was done by using Qiagens Maxi Prep kit. Transient expression of the maxi preps was verified using Fugene Transfection Reagent in Chicken Embryo Fibroblast Cells (CEF's) and chicken polyclonal sera against NDV-F.
Recombinant Generation
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using pSB1 US2 gpVIIdWt Syn donor plasmid and viral DNA isolated from vSB1-009 (vSB1-009 is already a recombinant virus expressing CA02 F gene of NDV). Essentially the procedure described in example 1 for was followed to generate, plaque purify and characterize recombinants by immunofluorescence.
After five rounds of plaque purification, pure recombinant virus (vSB1-010) was isolated and the purity of vSB1-010 was tested by IFA and PCR to validate the appropriate insertion as well as no remnant parental virus.







TABLE 10.1







Characteristics of vSB1-010













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vSB1-010
vSB1-
Guinea pig
NDV-F
Synthetic
SORF4-US2



009
CMV
VIId









Sequencing of the insert region confirmed that vSB1-010 contains the correct sequences of guinea pig CMV promoter and the NDV-F VIId wt gene as shown in the sequence of the donor plasmid SB1US2 gpVIIdwtsyn (SEQ ID NO:57).
Analysis of Recombinant by PCR
DNA was extracted from a stock virus by phenol/chloroform extraction, ethanol precipitated, and resuspended in 20 mM HEPES. PCR primers were designed to specifically identify the NDV-F VIId wt gene, the promoter, the polyA, as well as, the purity of the recombinant virus from SB1 parental virus. PCR was performed using 200 μg of DNA template along with the specified primers pairs indicted in Table 1. PCR cycling conditions are as follows (unless otherwise noted): 94° C.—2 min; 30 cycles of 94° C.—30 sec, 55° C.—30 sec, 68° C.—3 min; 68° C.—5 min.
Purity of recombinant virus was verified by PCR using primer pairs that are specific to the SB1 flanking arms, the gpCMV promoter, the NDV-F VIId wt gene and the syn tail. Primers, specific to HVT, MDV serotype 3 (MB080+MB081) were also included in the analysis. The PCR results demonstrate that recombinant virus vSB1-010 carries the intended expression cassette and the virus stock is free from detectable amounts of parental SB1-009 virus.
Immunofluorescent Staining of Recombinant vSB1-010 Virus Expressing Two NDV-F Proteins
For immunofluorescence testing, the P3 material was diluted 1:100 in media. Approximately 50 μl of the diluted virus was added to 10 ml of DMEM+2% FBS with 1×107 CEFs and then aliquoted onto a 96 well plate (100 μl/well). The plates were incubated for 5 days at 37° C.+5% CO2 until viral plaques were visible. The plates were fixed with 95% ice-cold acetone for three minutes and washed three times with PBS. Chicken anti-sera against Newcastle Disease Virus (lot#C0139, Charles Rivers Laboratory) at 1:1000 was added and the plates were incubated at 37° C. for 1 hour. After one hour incubation, the plates were washed three times with PBS and FITC anti-chicken (cat# F8888, Sigma) was added at 1:500. Again the plates were incubated at 37° C. for 1 hour. After one hour incubation the cells were rinsed three times with PBS and visualized with a fluorescent microscope using fluorescein isothiocyanate (FITC) filter.
The immunofluorescent staining results indicate that vSB1-010 exhibited a very strong expression of the NDV-F protein when the polyclonal sera against both CA02 and VIId F proteins of NDV were used.
Conclusion
Based on PCR testing and immunofluorescence analysis, vSB1-010 is a recombinant SB-1 in which VIId-F gene of NDV under the control of gpCMV promoter was successfully inserted into a vSB1-009, which already expresses the CA02-F gene of NDV. Consequently vSB1-010 carries both VIId and CA02 F genes of NDV genotypes and it is free of any detectable parental vSB1-009.
Example 6
Construction of Recombinant vHVT Vectors Expressing NDV-F
Preparation of Donor Plasmid pHM103+Fopt for vHVT114
The plasmid pHM103 (Merial Limited) containing the Intergenic I arms of HVT FC126, SV40 promoter and SV40 poly A was digested with NotI, dephosphorylated, and the 5.6 kb fragment was gel extracted. A NotI flanked 1.7 kb fragment of a chemically synthesized codon-optimized genotype VIId NDV-F gene (SEQ ID NO:1, coding for SEQ ID NO:2) was also NotI digested and the 1.7 kb fragment was gel extracted. The 5.6 and 1.7 kb fragments were ligated to create pHM103+Fopt (Table 10.2).







TABLE 10.2







Characteristics of vHVT114













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT114
HVT
SV40
Opt-VIId
SV40
IG1



FC126 strain









Generation of Recombinant HVT Viral Vector

A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid pHM103+Fopt and viral DNA isolated from the HVT strain FC126 (Igarashi T. et al., J. Gen. Virol. 70, 1789-1804, 1989). Essentially the procedure described in example 1 was followed to generate, plaque purify and characterize recombinants by immunofluorescence.
After five rounds of plaque purification, a recombinant virus designated as vHVT114 was isolated and the purity was tested by IFA and PCR to confirm NDV-F expression and the absence of parental virus.
PCR Analysis of Recombinant vHVT114
DNA was extracted from vHVT114 by phenol/chloroform extraction, ethanol precipitated, and was resuspended in 20 mM HEPES. PCR primers were designed to specifically identify the presence of the codon optimized NDV-F, the SV40 promoter, as well as, the purity of the recombinant virus from FC126 CL2 parental virus.
The PCR results showed that the sizes of PCR products after gel electrophoresis correspond well with the expected sizes and the banding patterns.
Sequence Analysis of the Inserted Region in Recombinant vHVT114
Analysis of vHVT114 genomic DNA region was performed by PCR amplification. Total of 10 primers were used to amplify the entire cassette, as well as, beyond the flanking BamHI-I arms used in the donor plasmid. The 4.727 kb PCR product was gel purified and the entire fragment was sequenced using the sequencing primers. The sequence result confirmed that the vHVT114 contains the correct SV40 promoter, the codon-optimized NDV-F and the SV40 polyA sequences that match exactly the sequence described for the donor plasmid pHM103+Fopt in SEQ ID NO:38 (see FIG. 20).
Western Blot Analysis of Recombinant vHVT114
Approximately 2×106 chicken fibroblast cells were infected at  ̃0.1 MOI with vHVT114 Pre-MSV. After two days of incubation at 37° C., infected as well as uninfected cells were harvested using a cell scraper after removing the media and rinsing with PBS. The cells were harvested with 1 ml of PBS and centrifuged. The cell pellets were lysed by following the Pierce Classic IP Kit (Thermo Scientific). 100 μl of the anti-NDV-F monoclonal antibody 001C3 (Merial Limited) was used to form the immune complex. The antibody/lysate sample was added to Protein A/G Plus Agarose to capture the immune complex. The immune complex was washed three times to remove non-bound material and then eluted in 50 ul volume using sample buffer elution under non-reducing condition. After boiling for 5 minutes, 10 μl of the samples were loaded into a 10% Acrylamide gel (Invitrogen). The PAGE gel was run in MOPS buffer (Invitrogen) at 200 volts for 1 hour. Then the gel was transferred onto a PVDF membrane.
The Protein Detector Western Blot Kit TMB System (KPL, cat#54-11-50) was used for blotting the PVDF membrane by using the reagents and following manufacturer's directions. After blocking the membrane for 1 hour at room temperature, the membrane was then rinsed three times in 1× Wash Buffer, five minutes each and then soaked in blocking buffer containing 1:1000 dilution of chicken serum raised against NDV virus (Lot # C0139, Charles River Laboratories). After washing three times in a washing buffer, the membrane was incubated with a peroxidase labeled goat anti-chicken IgG (KPL, cat#14-24-06) at a dilution of 1:2000 for 1 hour at room temperature. The membrane was then rinsed three times in 1× Wash Buffer, five minutes each. 5 ml of TMB membrane peroxidase substrate was added to the membrane and gently rocked for about 1 minute. The developing reaction was stopped by placing the membrane into water.
The immunoprecipitation and Western blot technique detected an approximately 55 kD protein in vHVT114 sample that corresponds to the expected size of F1 component of the NDV-F protein (FIG. 16).
Generation and Characterization of Other HVT Recombinants
Generation and characterization of other HVT recombinants, such as vHVT039, vHVT110, vHVT111, vHVT112, vHVT113, and vHVT116 were essentially done in the same way as for vHVT114 described above. The generation and characterization of recombinant HVT viral vectors were also described in U.S. patent application Ser. No. 13/689,625 filed on Nov. 29, 2012 (Merial limited), which is incorporated herein by reference in its entirety. Table 11 shows the features unique to each construct around the expression cassettes, including the respective sequences.







TABLE 11







Characteristics of the expression cassettes


of single HVT recombinants













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT039
HVT
MDV gB
Wtnm-Texas
SV40
IG1


vHVT110
HVT
mCMV IE
Wt-VIId
SV40
IG1


vHVT111
HVT
SV40
Wt-VIId
SV40
IG1


vHVT112
HVT
MCMV IE
Wt-YZCQ
SV40
IG1


vHVT113
HVT
MCMV IE
Wt-Texas
SV40
IG1


vHVT114
HVT
SV40
Opt-VIId
SV40
IG1


vHVT116
HVT
SV40
Opt-NDV-F
SV40
IG1





of CA02









Example 7
Construction of Double HVT Vectors Expressing NDV-F and IBDV VP2, and Double HVT Vectors Expressing IBDV VP2 Variants
Preparation of Donor Plasmid pHVT US2 SV-Fopt-synPA for vHVT306
The donor plasmid pHVT US2 SV-Fopt-synPA was constructed containing SV40 promoter, synthetic NDV F codon optimized VII gene, synthetic polyA tail flanked by the SORF3 and US2 arm sequences of HVT FC126.
Generation of Recombinant Virus
A standard homologous recombination procedure was followed by co-electroporation of secondary CEF cells using donor plasmid pHVT US2 SV-Fopt-synPA and viral DNA isolated from vHVT13 (an HVT vector expressing the IBDV VP2 gene, Merial Limited). Essentially the procedure described in example 1 was followed to generate, plaque purify and characterize recombinants by immunofluorescence.
After two rounds of plaque purification, pure recombinant virus (vHVT306) was isolated and the purity of vHVT306 was tested and confirmed by IFA and PCR.
PCR Analysis
Viral DNA was extracted from vHVT306 pre-master seed virus (pre-MSV) stock by QIA DNeasy Blood & Tissue Kit (Qiagen). PCR primers were designed to identify the presence of the NDV F optimized, the NDV F wild type, the SV40 promoter, the mCMV promoter, the flanking arms of US2 HVT virus and SB-1 virus.
PCR amplification with various primers confirmed that the vHVT306 had the expected amplification patterns and amplicons.
Genomic Analysis
The genomic DNA of vHVT306 pre-MSV stock was sequenced to verify the sequence of the recombination arm region as well as inserted gene cassette.
Primers were designed to amplify the entire inserted gene cassette including recombination arm used in donor plasmid. Analysis of vHVT306 genomic DNA was performed by PCR amplification and followed by nucleotide sequence determination.
The vHVT306 (donor plasmid pHVT US2 SV-Fopt-synPA) containing the recombinant arms, SV40 promoter and NDV F codon-optimized gene was confirmed to be correct as shown in SEQ ID NO:45 (FIG. 20).
Western Blot Analysis
The NDV F protein expression of vHVT306 was confirmed by two-step immunodetection. First, the expressed NDV F proteins from vHVT306 infected CEF were captured by the immunoprecipitation using anti-NDV F monoclonal antibody 001C3 (Merial Limited). Subsequently Western blot analysis using anti-NDV polyclonal serum (Charles River Laboratories) was applied to detect the NDV F protein in the captured samples (NDV F protein-monoclonal antibody complex). A 55 kDa protein in vHVT306 pre-MSV lysates was detected by anti-NDV serum which corresponds to the expected size of NDV F1 fusion protein.
Generation and Characterization of Other Double HVT Recombinants
Generation and characterization of double HVT recombinants, such as vHVT301, vHVT302, vHVT303, vHVT304, vHVT202, and vHVT307 were essentially done in the same way as for vHVT306 described above. The generation and characterization of recombinant HVT viral vectors were also described in U.S. patent application Ser. No. 13/689,625 filed on Nov. 29, 2012 (Merial limited), which is incorporated herein by reference in its entirety. Table 12 shows the features unique to each construct around the expression cassettes, including the respective sequences.







TABLE 12







Characteristics of the expression cassettes


of double HVT recombinants















NDV-F gene





Parental

or IBDV




Name
virus
Promoter
VP2 gene
Poly-A
Locus





vHVT301
vHVT13
SV40
Wt-VIId
SV40
IG2





NDV-F




vHVT302
vHVT13
US10
Opt-VIId
US10
US10





NDV-F




vHVT303
vHVT13
US10
Opt-V
US10
US10





(CA02)







NDV-F




vHVT304
vHVT13
SV40
Opt-VIId
Syn-
IG2





NDV-F
thetic



vHVT306
vHVT13
SV40
Opt-VIId
Syn-
SORF3-US2





NDV-F
thetic



vHVT307
vHVT13
SV40
Opt-V
Syn-
SORF3-US2





(CA02)
thetic






NDV-F




vHVT202
vHVT306
Guinea
IBDV E
Syn-
SORF3-US2




pig CMV
VP2
thetic









Example 8
Lack of Horizontal Transmission of gC-Deleted SB-1 Mutant
The objective of the study was to compare the level of viremia and horizontal transmission induced by the parental SB-1 with that of a recombinant SB-1 virus in which the gC gene was deleted (see example 3).
Two groups (A and B) of thirty one-day-old specific pathogen free (SPF) white Leghorn chicks were randomly constituted. Twenty birds from groups A were vaccinated (D0) by the subcutaneous route (nape of the neck; 0.2 ml/bird) with 2000 PFU of parental SB-1 and twenty from groups B with 2000 PFU of the SB-1 gC-deleted mutant. Ten birds were kept unvaccinated in the same isolator as the vaccinated birds (groups Ac and Bc). At 2-weeks-of-age (D14), the spleen as well as 2 feathers of twenty vaccinated birds of groups A and B were removed after euthanasia. At 4-weeks-of-age (D28) the spleen of the 10 contact birds of groups Ac and Bc were also removed for viral isolation. White blood cells were collected from the buffy coat of ground spleens which had added to lymphocyte separation medium and centrifuged. For each bird, 106 leucocytes were added to a 60 mm tissue culture dish that contained confluent monolayers of primary chicken embryo fibroblasts (CEF) prepared the day before. Five days post-infection, MDV plaques were counted on each dish and the number of positive birds and mean number of plaques was calculated. For feather follicles samples, the feather pulp was added to SPGA medium and sonicated for 10 seconds before placing on confluent monolayers of primary CEF from which the media had been removed. The pulp suspension was allowed to absorb for 45 minutes prior to adding fresh media with 1% calf serum.
Results of virus isolation from spleen and from feather follicles of vaccinated birds at D14 are reported in Table 13. All birds from both groups were positive for virus isolation from spleen with a similar mean number of plaques of 142.5 and 176.0 for groups A and B, respectively. Virus could be isolated from feather follicles of all birds in group A and from 90% of birds in group B.
Results of virus isolation from spleen of unvaccinated contact birds at D28 are reported in Table 14. Seven out of ten birds from group Ac were positive for virus isolation from spleen indicating that the parental SB-1 spread horizontally to contact birds. Virus could not be isolated from birds of group Bc suggesting that the gC-deleted mutant did not spread to contact birds.







TABLE 13







Results of viral isolation from spleen buffy coat (BC) and from feather


follicles (FF) of vaccinated birds from groups A and B at D 14










Group A -SB1
Group B - SB-1 gC deleted











Sample No.
Spleen BC*
FF**
Spleen BC*
FF














1
46
+
179
+


2
92
+
129
+


3
80
+
108
+


4
135
+
111
+


5
18
+
38
+


6
55
+
109
−


7
187
+
83
−


8
233
+
383
+


9
51
+
31
+


10
213
+
251
+


11
100
+
345
+


12
50
+
44
+


13
271
+
331
+


14
128
+
106
+


15
155
+
80
+


16
226
+
TNTC (563)
+


17
145
+
145
+


18
114
+
224
+


19
88
+
181
+


20
TNTC*** (462)
+
78
+


Mean or
142.5
20/20
176.0
18/20


positive/total






Standard
103.3
−
137.6
−


deviation





*Average plaque counts from spleen buffy coat (BC)


**positive sample from feather follicles


***TNTC too numerous to count













TABLE 14







Results of viral isolation from spleen buffy coat (BC) of


unvaccinated contact birds from groups Ac and Bc at D 28










Group Ac -
Group Bc -



SB-1
SB-1 gC deleted


Sample No.
Spleen BCE*
Spleen BCE*












1
0
0


2
0
0


3
0
0


4
8
0


5
129
0


6
3
0


7
25
0


8
1
0


9
108
0


10
1
0





*Average plaque counts






This study indicates that the level of viremia of the gC-deleted SB-1 mutant measured at D14 post-vaccination was similar to that of the parental SB-1 virus suggesting that the gC deletion did not impair the ability of the SB-1 virus to replicate in vaccinated birds. The level of virus at the feather follicle was slightly lower with the gC-deleted mutant since 2/20 birds did not have detectable amount of virus. Horizontal transmission could be detected in 7/10 birds in contact with birds vaccinated with the parental SB-1. In contrast, no virus could be detected from the birds in contacts with birds vaccinated with the gC-deleted mutant indicating that the gC deletion severely impaired horizontal transmission.
Example 9
ND Efficacy Induced by SB-1 Recombinant Alone or in Combination with an HVT-IBD Vector Vaccine in One Day-Old SPF Chickens
The objective of the study was to evaluate the efficacy of the vSB1-004 recombinant expressing NDV F gene against an ND challenge performed at 4 week-of-age in SPF chicks vaccinated with vSB1-004 alone or in combination with an HVT-IBD vector vaccine.
Three groups (1, 2 and 3) of fifteen one-day-old specific pathogen free (SPF) white Leghorn chicks were randomly constituted. Two vectored vaccines were used: the vSB1-004 described in example 1 and vHVT13, an herpesvirus of turkey (HVT) vector expressing the VP2 gene of infectious bursal disease virus Faragher 52/70 strain (active ingredient of the Merial licensed VAXXITEK® HVT+IBD vaccine, U.S. Pat. No. 5,980,906 and EP 0 719 864). Birds from groups 1, 2 and 3 received vHVT13 only (control group), vSB1-004 only and a mix of vHVT13 and vSB1-004, respectively (see Table 6). All birds were vaccinated by the subcutaneous route (nape of the neck) with 2000 PFU of vSB1-004 and/or vHVT13 (D0). Twenty seven days after vaccination (D27), birds of each group were challenged with the genotype V Mexican Chimalhuacan (Mex V) velogenic NDV strain. The challenge was performed by the intramuscular (IM) route using 105 Egg Infectious Dose 50 (EID50) diluted in 0.2 ml of physiological sterile water. Birds were observed daily during 14 days after challenge for clinical signs and mortality. Oropharyngeal swabs were also sampled from 10 birds per group 5, 7 and 9 days after challenge. The viral RNA load was evaluated in these swabs after RNA extraction by using a quantitative reverse transcriptase real time polymerase chain reaction (qRT-PCR) based on the M gene and described by Wise et al. (2004; Development of a Real-Time Reverse-Transcription PCR for Detection of Newcastle Disease Virus RNA in Clinical Samples; J. Clin. Microbiol. 42, 328-338). Shedding levels were expressed as log 10 egg infectious dose 50% (EID50) per mL. Blood was also sampled at the time of challenge (D27). The serums were tested with the anti-IBD ELISA (Synbiotics ELISA ProFlok PLUS IBD) to evaluate the impact of vSBA-004 on the vHVT13-induced IBDV antibodies.
Results of protection and serology are summarized in Table 15. All control birds died within 5 days after ND challenge. The vSB1-004 recombinant virus induced full clinical protection either alone or when combined with vHVT13. The number of birds shedding detectable amount of challenge ND virus was very low in both vaccinated groups. The mean IBD ELISA titers in groups 1 and 3 were nearly identical indicating the lack of vSB1-004 interference on vHVT13-induced IBDV antibodies.







TABLE 15







Results of ND protection induced by SB-1 recombinants expressing NDV F


gene in SPF day-old chicks (15/group) challenged at D27













Shedding in oropharyngeal



ND
IBD ELISA titer
swabs**













Group
Vaccine (D0)
protection
(log10 ± SD*)
D5***
D7
D9





1
vHVT13
0%
4.04 ± 0.15
—****
—
—


2
vSB1-004
100%
0.26 ± 0.50
1/10 (2.2)
0/10
0/10


3
vSB1-004 +
100%
4.02 ± 0.08
3/10 (4.1)
2/10 (2.8)
1/9 (3.4)



vHVT13










*Standard deviation


**number of birds shedding/total (mean log10 EID50 equivalent/mL)


***day post-challenge


****all birds of group 1 died before D5 and therefore, shedding was not evaluated in this group






The ND challenge model with the genotype V Chimalhuacan velogenic NDV is very severe. In these severe challenge conditions, vSB1-004 induced full clinical protection and excellent protection against shedding of challenge virus by the oropharyngeal route. It is worth noting that the F gene inserted in vSB1-004 is from a genotype VIId NDV strain and the challenge strain used here is a genotype V. It shows therefore that the genotype VIId F gene inserted into the SB-1 vector is cross-protecting birds against a genotype V challenge. The addition of vHVT13 did not impair the ND protection induced by vSB1-004 and the vSB1-004 did not interfere on vHVT13-induced IBD antibody titers, demonstrating compatibility of SB-1 vector with HVT vector.
Example 10
ND Early Efficacy Induced by SB-1 Recombinant in One-Day-Old SPF Chickens
The objective of the study was to evaluate the efficacy of the vSB1-004 recombinant expressing NDV F gene against an early (D14) ND challenge in SPF chicks performed with two different NDV challenge strains.
Two groups (1 and 2) of twenty one-day-old specific pathogen free (SPF) white Leghorn chicks were randomly constituted. Birds from group 2 were vaccinated by the subcutaneous route (nape of the neck) with 2000 PFU of vSB1-004. Chicks from group 1 were not vaccinated and were kept as control birds. At 2 week-of-age, half of the birds of each group were challenged with the genotype V Mexican Chimalhuacan (Mex V) velogenic NDV strain and the other half with the genotype VIId Malaysia 04-1 (Mal VIId) velogenic NDV strain. The challenge was performed by the intramuscular (IM) route using 105 Egg Infectious Dose 50 (EID50) diluted in 0.2 ml of physiological sterile water. Birds were observed daily during 14 days after challenge for clinical signs and mortality.
Results of protection are summarized in Table 16. All control birds died within 5 days after ND challenges. The vSB1-004 recombinant virus induced partial protection against mortality (70% and 40% protection after challenge with Mal VIId and Mex V, respectively) and against morbidity (50% and 30% protection after challenge with Mal VIId and Mex V, respectively) in these severe early challenge conditions.







TABLE 16







Results of early ND protection induced by SB-1 recombinants


expressing NDV F gene in SPF day-old chicks














Protection
Protection




Challenge
against
against


Group
Vaccine
strain
mortality
morbidity





1
—
Mal VIId
0/10
0/10




Mex V
0/9 
0/9 


2
vSB1-004
Mal VIId
7/10
5/10




Mex V
4/10
3/10









The early ND challenge model that was used to evaluate the efficacy of vSB1-004 recombinant was chosen because Marek's disease virus vectors expressing NDV F gene do not generally provide full protection in this model. Indeed, their onset of immunity is delayed compared to live NDV vaccines (Morgan et al. (1993) Avian Dis 37, 1032-40; Heckert et al. (1996) Avian Dis 40, 770-777). It is therefore a good model to evaluate and compare the vaccine candidates. In these severe early challenge conditions, vSB1-004 recombinant induced partial protection that was only slightly higher against the Malaysian genotype VIId challenge than against the Mexican Chimalhuacan genotype V one indicating a broad protection against the 2 most prevalent genotypes circulating in the Americas and Eurasia/Africa, respectively.
Example 11
ND Efficacy Induced by SB-1 Recombinant Alone or in Combination with an HVT-IBD Vector Vaccine in 1 Day-Old Broiler Chickens with Maternal Antibodies
The objective of the study was to evaluate the efficacy of the vSB1-004 recombinant expressing NDV F gene against two ND challenges performed at 4 week of age in broiler chicks vaccinated with vSB1-004 alone or in combination with an HVT-IBD vector vaccine.
Six groups (1a, 1b, 2a, 2b, 3a, 3b) of twelve one-day-old broilers (Hubbard JA957 line) were randomly constituted. Two vectored vaccines were used: the vSB1-004 described in example 1 and vHVT13, an herpesvirus of turkey (HVT) vector expressing the VP2 gene of infectious bursal disease virus Faragher 52/70 strain (active ingredient of the Merial licensed VAXXITEK® HVT+IBD vaccine). Birds from groups 1 (1a & 1b) were vaccinated with vHVT13 only (control group); those from groups 2 with vSB1-004 only and those from groups 3 with a mix of vHVT13 and vSB1-004 (see Table 17). All birds were vaccinated by the subcutaneous route (nape of the neck) with 2000 PFU of vSB1-004 and/or vHVT13 (D0). Twenty eight days after vaccination (D28), all birds of each subgroup “a” were challenged with the genotype VIId Malaysia 04-1 (Mal VIId) velogenic NDV strain and all birds of each subgroup “b” with the genotype V Mexican Chimalhuacan (Mex V) velogenic NDV strain. The challenge was performed by the intramuscular (IM) route using 105 Egg Infectious Dose 50 (EID50) diluted in 0.2 ml of physiological sterile water. Birds were observed daily during 14 days after challenge for clinical signs and mortality. Blood was also sampled from 5 birds in each group at the time of challenge (D28). The serums were tested with the anti-IBD ELISA (Synbiotics ELISA ProFlok PLUS IBD) to evaluate the impact of vSB1-004 on the vHVT13-induced IBDV antibodies in broilers.
Results of protection and serology are summarized in Table 17. All control birds died within 5 days after ND challenges. The vSB1-004 recombinant virus induced significant level of clinical protection when combined or not with vHVT13. The number of birds shedding detectable amount of virus was very low in both vaccinated groups. The mean IBD antibody titers in groups 2 was still high (3 log 10) at D27 indicating a high level of maternally-derived IBD antibodies; nevertheless, vHVT13 induced a clear IBD antibody response which was not affected when mixed with vSB1-004.







TABLE 17







Results of ND protection induced by SB-1 recombinants


expressing NDV F gene in broiler day-old chicks (12


per group except group 1b: 11) challenged at D 28













ND chal-
ND pro-
IBD ELISA titer


Group
Vaccine (D0)
lenge
tection
(log10 ± SD*)





1a
vHVT13
Mal VIId
 0%
3.94 ± 0.24


1b
vHVT13
Mex V
 0%



2a
vSB1-004
Mal VIId
83%
3.03 ± 0.44


2b
vSB1-004
Mex V
75%



3a
vSB1-004 + vHVT13
Mal VIId
75%
4.02 ± 0.23


3b
vSB1-004 + vHVT13
Mex V
83%





*Standard deviation






Results of this study indicated significant levels of protection induced by vSB1-004 in broilers with NDV MDA. The addition of vHVT13 did not have negative impact on vSB1-004-induced ND protection indicating the lack of vHVT13 interference. Furthermore, vSB1-004 did not interfere on vHVT13-induced IBD antibodies, confirming in broilers the compatibility between these two vectors.
Example 12
Lack of Interference of vSB1-004 on IBD Early Efficacy Induced by an HVT-IBD Vector Vaccine in 1 Day-Old SPF Chicks
The objective of the study was to evaluate the potential interference of the vSB1-004 recombinant on the IBD efficacy induced by an HVT-IBD vector vaccine (vHVT13) in an early (D14) IBD challenge model in SPF chicks.
Three groups (1 to 3) of ten one-day-old specific pathogen free (SPF) white Leghorn chicks were randomly constituted. Birds from group 1 were vaccinated by the subcutaneous route (nape of the neck) with 2000 PFU of vSB1-004 (control group). Chicks from group 2 were vaccinated with 2000 PFU of vHVT13 and birds from group 3 were vaccinated with 2000 PFU of vHVT13 and 2000 PFU of vSB1-004. At 2 week of age, all birds of each group were challenged by the ocular route with 50 μL containing 2.5 log 10 EID50 of the IBDV classical strain Faragher 52/70. Birds were observed daily during 10 days after challenge for clinical signs and mortality. All birds were euthanized 10 days after challenge and body and bursa of Fabricius weights were recorded in order to evaluate the bursa/body weight ratio. Their bursa was also checked for histological lesions typical of IBD. A score was assigned to each bursa based on the severity of the lesions as shown in Table 18. The number of affected birds (non-protected) in each group was calculated. A bird was considered as affected if it died and/or showed notable sign of disease and/or intermediate or severe lesions of the bursa of Fabricius (i.e., histology score ≧3).







TABLE 18







Scoring scale of histological lesions of the bursa of Fabricius








Score
Histology observation/lesions





0
No lesion, normal bursa


1
1% to 25% of the follicles show lymphoid depletion (i.e.,



less than 50% of depletion in 1 affected follicle), influx



of heterophils in lesions


2
26% to 50% of the follicles show nearly complete lymphoid



depletion (i.e., with more than 75% of depletion in 1



affected follicle), the affected follicles show necrosis



lesions and severe influx of heterophils may be detected


3
51% to 75% of the follicles show lymphoid depletion;



affected follicles show necrosis lesions and a severe influx



of heterophils is detected


4
76% to 100% of the follicles show nearly complete lymphoid



depletion; hyperplasia and cyst structures are detected;



affected follicles show necrosis lesions and severe influx



of heterophils is detected


5
100% of the follicles show nearly complete lymphoid



depletion; complete loss of follicular structure; thickened



and folded epithelium; fibrosis of bursal tissue









Results of protection are summarized in Table 19. All control birds became sick and one died after challenge whereas all vaccinated birds remained healthy. The bursal body weight ratios of groups 2 and 3 were similar and significantly higher than that of group 1. All 8 birds that survived challenge from group 1 had bursa lesion scores of 4 or 5







TABLE 19







Results of early (D14) IBD protection induced by vHVT13 alone or in


combination with vSB1-004 recombinant expressing NDV F gene


in SPF day-old chicks.

















Bursal/Body
Bursa





Mor-
Mor-
weight
with



Group
Vaccine
tality
bidity
ratio* 100
score ≧3
Protection





1
vSB1-004
1/9*
9/9
0.14 ± 0.02
8/8
0%


2
vHVT13
0/10
0/10
0.47 ± 0.10
0/10
100%


3
vHVT13 +
0/9*
0/9
0.46 ± 0.20
1/9
89%



vSB1-004










*One bird in these groups died before challenge.






The early IBD challenge model that was used to evaluate the lack of interference of vSB1-004 recombinant on vHVT13-induced IBD protection was chosen because it is very sensitive to detect interference on vHVT13 protection. Results obtained with vSB1-004+vHVT13 indicated an excellent level of IBD protection (89%) indicating compatibility between vSB1-004 and vHVT13 even when measured in an early IBD challenge.
Example 13
Efficacy of vHVT114, vHVT116, vSB1-007, vSB1-008 (Alone or with vHVT13) and vHVT304 Against Challenges with NDV ZJ1 (Genotype VIId) and California/02 (Genotype V) at 21 Days of Age in SPF Chickens
The aim of the study was to assess the efficacy of 2 single HVT recombinant constructs (vHVT114 and vHVT116), 2 SB1 recombinant constructs (vSB1-007 & vSB1-008) expressing the NDV F gene and a double HVT recombinant (vHVT304) against Newcastle disease challenge with NDV ZJ1 (genotype VIId) and California/02 (genotype V) performed at 21 days of age in SPF chickens.
The characteristics of these 5 vaccine candidates are described in Table 20 below.







TABLE 20







Characteristics of the vectors used in the challenge study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT114
HVT
SV40
Opt-VIId
SV40
IG1


vHVT116
HVT
SV40
Opt-V
SV40
IG1


vSB1-007
SB-1
SV40
Opt-VIId
gC
gC


vSB1-008
SB-1
SV40
Opt-V
SV40
IG1


vHVT304
vHVT13*
SV40
Opt-VIId
Synth
IG2





*vHVT13 is the active ingredient of the licensed Vaxxitek HVT-IBD vaccine based on an HVT vector expressing the IBDV VP2 gene (see U.S. Pat. No. 5,980,906 and EP 0 719 864).






On D0, 158 one-day-old SPF chickens were randomly allocated into 6 groups of 24 birds (vaccinated) and 1 group of 12 birds (non-vaccinated controls). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 1000 pfu as described in Table 21 below. The birds were then separated into two sub-groups, each sub-group being challenged by the intramuscular route on D21 with 5 log 10 EID50 of either NDV ZJ1 (genotype VIId) or California/02 (genotype V) velogenic strain.







TABLE 21







Results of efficacy










Vaccine at
% clinical protection










Group
day-old (D0)
CA/02 (genotype V)
ZJ1 (genotype VIId)





G1
—
 0%
 0%


G2
vHVT114
100%
100% 


G3
vHVT116
100%
90%


G4
vSB1-007
 92%
100% 


G5
vSB1-008
100%
100% 


G6
vSB1-008 +
100%
83%



vHVT13




G7
vHVT304
 92%
75%









Each group was monitored before and after challenge. Technical problems observed with isolators reduced the number of birds in group 2 (vHVT114: from 24 to 14) and in group 3 (vHVT116: from 24 to 20). NDV clinical signs were recorded after challenge. Serum was collected from blood samples taken from birds of groups 2 and 7 before challenge (D21) for NDV serology by HI test using each challenge strains as antigen.
Percentages of protection against mortality and morbidity are reported in the table above. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of both challenges. All vaccines induced high levels (≧75%) of protection against both challenges. Full clinical protection against both challenges was induced by vHVT114 and vSB1-008.
The shedding was evaluated after challenge by real time RT-PCR in oral and cloacal swabs taken 2 and 4 days post-challenge. Percentage of positive (Ct<40) birds are shown for both challenges in FIGS. 17A and 17B. Note that all 6 birds were dead at 4 dpch in the control group challenged with the CA/02 isolate and only one bird (out of 6) was still alive at 4 dpch in the control group challenged with ZJ1. Shedding was detected in all control birds. Reduction of the percentage of birds positive for shedding was observed in all vaccinated groups.
In conclusion, the results of this study showed the very good ND protection at 3 weeks of age induced by tested Marek's disease vector vaccines.
Example 14
Efficacy of vHVT114, vSB1-007, vSB1-009, vHVT306 and vHVT307 Vaccines Against Challenges with NDV Texas GB Strain at 28 Days of Age in SPF Chickens
The aim of the study was to assess the efficacy of combinations of different Marek's disease vector vaccines expressing the NDV F and/or the IBDV VP2 gene against Newcastle disease challenge (Texas GB strain, genotype II) performed at 28 days of age in SPF chickens.
The characteristics of the 5 recombinant vaccine candidates tested in this study are described in Table 22 below.







TABLE 22







Characteristics of the vectors used in the challenge study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT114
HVT
SV40
Opt-VIId
SV40
IG1


vSB1-007
SB-1
SV40
Opt-VIId
gC
gC


vSB1-009
SB-1
SV40
Opt-V
gC
gC





(CA02)




vHVT306
vHVT13
SV40
Opt-VIId
Synth
SORF3-







US2


vHVT307
vHVT13
SV40
Opt-V
Synth
SORF3-





(CA02)

US2









The Marek's disease virus serotype 1 (CVI988 (or Rispens) strain; Gallid herpesvirus 2) and serotype 2 (SB-1 strain; gallid herpesvirus 3) vaccines were used also in combination with recombinant viruses in some of the groups.
On D0, 135 one-day-old SPF chickens were randomly allocated into 9 groups of 15 birds. The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL containing a target dose of 2000 pfu for recombinant vaccines (vSB1-007, vSB1-009, vHVT13, vHVT306, vHVT307, vHVT114), and 1000 pfu for parental Marek's disease vaccine strains (SB-1 and CVI988). The design of the study is shown in Table 23 below. The birds were challenged by the intramuscular route on D28 with 4.0 log 10 EID50 velogenic ND Texas GB (genotype II) strain.







TABLE 23







Results of efficacy











% ND protection after



Vaccine at
Newcastle disease challenge


Group
day-old (D0)
at 28 days of age





G1
—
 0%


G2
vSB1-007 + vHVT13
80%


G3
vSB1-009
100% 


G4
vSB1-009 + vHVT13
86%


G5
vSB1-009 + vHVT13 + CVI988
93%


G6
vHVT306 + SB-1
100% 


G7
vHVT307
100% 


G8
vHVT307 + SB-1
93%


G9
vHVT114 + vHVT13 + SB-1
100% 









Each group was monitored before and after challenge. NDV clinical signs after challenge were recorded.
Percentages of protection against mortality and morbidity are reported in the table 23 above. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of challenge. Excellent levels of protection were observed in all vaccinated groups. Birds from G3, G6, G7 and G9 were fully protected. This study shows that the vSB1-ND candidates can be co-administered with vHVT13 and CVI988 and still provide a very good ND protection. Similarly, double HVT-IBD+ND are compatible with SB-1 and vHVT-ND (vHVT114) is compatible with vHVT13 and SB-1.
In conclusion, the results of this study showed the lack of interference on ND protection induced by the tested Marek's disease parental and vector vaccines.
Example 15
Efficacy of vHVT114, vHVT307, vSB1-007 and vSB1-009 in Combination with vHVT13 Against Challenges with NDV Chimalhuacan Strain (Genotype V) at D28 in SPF Chickens
The aim of the study was to assess the efficacy of one HVT recombinant construct (vHVT114) and two SB1 recombinant constructs (vSB1-007 and vSB1-009) expressing the NDV F gene in combination with vHVT-IBD (vHVT13), as well as a double HVT vHVT307 expressing both NDV F and IBDV VP2 against Newcastle disease challenge (Chimalhuacan, genotype V) performed at 28 days of age in SPF chickens.
The characteristics of these 4 vaccine candidates are described in Table 24 below.







TABLE 24







Characteristics of the vectors used in the challenge study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT114
HVT
SV40
Opt-VIId
SV40
IG1


vSB1-007
SB-1
SV40
Opt-VIId
gC
gC


vSB1-009
SB-1
SV40
Opt-V
gC
gC





(CA02)




vHVT307
vHVT13*
SV40
Opt-V
Synth
SORF3-





(CA02)

US2









On D0, 45 one-day-old SPF chickens were randomly allocated into 4 groups of 10 birds and 1 group of 5 birds (unvaccinated control group). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 2000 pfu as described in Table 25 below. The birds were challenged by the intramuscular route on D28 with 5.0 log 10 EID50 velogenic Chimalhuacan (genotype V) strain.







TABLE 25







Study design and results of ND efficacy












% protection
% protection



Vaccine at
against
against


Group
day-old (D0)
mortality
morbidity





G1
—
 0%
 0%


G2
vHVT114 + vHVT13
100% 
100% 


G3
vHVT307
80%
80%


G4
vSB1-007 + vHVT13
90%
90%


G5
vSB1-009 + vHVT13
90%
90%









Each group was monitored before and after challenge. NDV clinical signs were recorded after challenge. Oropharyngeal swabs were taken in the vaccinated groups at 5 and 7 days post-challenge to evaluate the viral load by real time RT-PCR.
Percentages of protection against mortality and morbidity are reported in the table above. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of challenge. Very good protection was observed in all 4 vaccinated groups, a full clinical protection being induced by vHVT114+vHVT13. The percentage of positive birds and the mean shedding titer (expressed as log 10 EID50 equivalent per mL) are shown in FIGS. 18A and 18B. Surprisingly, no shedding was detected in G2 indicating a complete (against both clinical signs and shedding) ND protection induced by vHVT114 even if co-administered with vHVT13, in the tested conditions. The shedding levels detected in the other vaccinated groups were low with a slightly higher level detected in G3 (vHVT307) at 5 days post-infection (pi) only.
In conclusion, this example further illustrates the excellent ND protection induced by double HVT-IBD+ND recombinant or a combination of SB1-ND or HVT-ND and HVT-IBD (vHVT13) recombinant viruses. Contrary to the general belief in the field that a second HVT vaccine (regular HVT vaccines or recombinant HVT vaccines) interferes with the immunity to the foreign genes inserted into the first recombinant HVT vaccine, the present invention showed surprising result that vHVT114 in combination with vHVT13 offered excellent protection against NDV and no interference effect was observed.
Example 16
Efficacy of vHVT306, vSB1-008 in Combination with vHVT13 Administered by SC or in Ovo Route Against Challenge with NDV Chimalhuacan Strain (Genotype V) at D28 in SPF Chickens
The aim of the study was to assess the efficacy of the vHVT306 double HVT expressing both NDV F and IBDV VP2 genes, and the vSB1-008 SB1 recombinant expressing the NDV F gene in combination with vHVT-IBD (vHVT13), administered by the in ovo or by the subcutaneous route against Newcastle disease challenge (Chimalhuacan, genotype V) performed at 28 days of age in SPF chickens.
The design of the groups is shown on Table 26. Sixty SPF embryonated eggs (after approximately 18 days and 18 hours of incubation; D-3) were used for the in ovo administration (20 per group for G1, G2 and G3). Fifty microliters of vaccine containing 2000 PFU were administered by the in ovo route using the IntelliLab System device from AviTech LLC (Salisbury, Md., USA). Hatchability and survival were recorded after in ovo administration. On D0, 20 one-day-old SPF chickens were randomly allocated into 2 groups of 10 birds (G4 and G5). The birds were injected by subcutaneous (SC) injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 2000 pfu as described in Table 26 below. Ten birds per group were challenged by the intramuscular route on D28 with 5.0 log 10 EID50 velogenic Chimalhuacan (genotype V) strain.







TABLE 26







Study design and results of ND efficacy














% protection
% protection



Vaccine at
Admin.
against
against


Group
day-old (D0)
route
mortality
morbidity





G1
vHVT13
In ovo
 0%
 0%


G2
vHVT306
In ovo
100%
100% 


G3
vSB1-008 + vHVT13
In ovo
 78%
68%


G4
vHVT306
SC
100%
100% 


G5
vSB1-008 + vHVT13
SC
100%
70%









Each group was monitored before and after challenge. NDV clinical signs were recorded after challenge. Oropharyngeal swabs were taken in the vaccinated groups at 5 and 7 days post-challenge to evaluate the viral load by real time RT-PCR.
Full hatchability and viability were recorded up to D28 (challenge day) for birds of groups G1 and G2. Hatchability in G3 was 85% and one additional bird died after hatching in this group. The lower hatchability of that group may be due to egg incubator problems. Body weights of males and females in G1, G2 and G3 were similar at D1 and at D28.
Percentages of protection against mortality and morbidity are reported in the table 26. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of challenge. Very good protection was observed in all 4 vaccinated groups, a full clinical protection being induced by vHVT306 administered by both routes.
The percentage of positive birds and the mean shedding titer (expressed as log 10 EID50 equivalent per mL) are shown in Table 27. Absence of detectable or very low shedding was observed in G2 and G4 vaccinated with vHVT306. The shedding levels detected in the groups vaccinated with vSB1-008+vHVT13 were higher especially at 5 days post-infection (pi).







TABLE 27







Results of protection against shedding (percentage of


birds with detectable shedding and mean viral load in


log10) evaluated at D5 and D7 after NDV challenge














Percent of






positive
Mean viral



Vaccine at
Admin.
birds
load*


Group
day-old (D0)
Route
(D5/D7 pi)
(D5/D7 pi)





G2
vHVT306
In ovo
0/0%
2.7/2.7


G3
vSB1-008 + vHVT13
In ovo
100/38% 
5.2/3.2


G4
vHVT306
SC
20/10%
3.2/2.9


G5
vSB1-008 + vHVT13
SC
80/50%
4.6/3.4





*Mean quantitative real time PCR value expressed in equivalent log10 EID50; the threshold is set at 2.7 log10.






In conclusion, this example shows excellent ND protection induced by vHVT306 double HVT recombinant administered either by in ovo or by SC routes. The performance of vSB1-008+vHVT13 was slightly lower especially after in ovo administration, but it may be at least partially due to egg incubator problems. Indeed, the in ovo safety testing of another SB1-ND recombinant (vSB1-009) at 1000 or 4000 PFU associated with 6000 PFU of vHVT13 did not show any difference in hatchability and early survival with a group receiving 6000 PFU of vHVT13 only.
Example 17
Efficacy of vHVT304, vHVT306, vSB1-007 and vSB1-008 in Combination with vHVT13 Against Challenge with NDV Chimalhuacan Strain (Genotype V) at D42 in Commercial Broiler Chickens
The aim of the study was to assess the efficacy of two double HVT (vHVT304 and vHVT306) expressing both NDV F and IBDV VP2 genes, and two SB1 recombinants (vSB1-007 and vSB1-008) expressing the NDV F gene in combination with vHVT-IBD (vHVT13) against Newcastle disease challenge (Chimalhuacan, genotype V) performed at 42 days of age in commercial broiler chickens.
The design of the groups is shown on Table 28. On D0, 55 one-day-old commercial broiler chickens were randomly allocated into 5 groups of 11 birds. The birds were injected by subcutaneous (SC) injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 2000 pfu as described in Table 28 below. Ten birds per group were challenged by the intramuscular route on D42 with 5.0 log 10 EID50 velogenic Chimalhuacan (genotype V) strain.







TABLE 28







Study design and results of ND efficacy












% protection
% protection



Vaccine at
against
against


Group
day-old (D0)
mortality
morbidity





G1
vHVT13
 0%
 0%


G2
vHVT304
82%
82%


G3
vHVT306
100% 
100% 


G4
vSB1-007 + vHVT13
100% 
100% 


G5
vSB1-008 + vHVT13
91%
91%









Each group was monitored before and after challenge. NDV clinical signs were recorded during 14 days after challenge. Oropharyngeal swabs were taken in the vaccinated groups at 5 and 7 days post-challenge to evaluate the viral load by real time RT-PCR.
Percentages of protection against mortality and morbidity are reported in the table 28. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of challenge. Very good protection was observed in all 4 vaccinated groups, a full clinical protection being induced by vHVT306 and by vSB1-007+vHVT13.
The percentage of positive birds and the mean shedding titer (expressed as log 10 EID50 equivalent per mL) are shown in Table 29. The best reduction of shedding was induced by vHVT306 and vSB1-007+vHVT13, which were also the best candidates for clinical protection.







TABLE 29







Results of protection against shedding (percentage of birds


with detectable shedding and mean viral load in log10)


evaluated at D5 and D7 after NDV challenge (pi)












Percent of
Mean viral



Vaccine at
positive birds
load*


Group
day-old (D0)
(D5/D7 pi)
(D5/D7 pi)





G2
vHVT304
100/100%
5.4/4.6


G3
vHVT306
40/50%
3.5/3.7


G4
vSB1-007 + vHVT13
80/70%
3.8/4.8


G5
vSB1-008 + vHVT13
100/100%
4.8/4.3





*Mean quantitative real time PCR value expressed in equivalent log10 EID50; the threshold is set at 2.7 log10.






The vSB1-007+vHVT13 performed better than vSB1-008+vHVT13. The vSB1-007 genomic structure differs from that of vSB1-008 in different aspects: locus of insertion, promoter, poly-adenylation signal and F gene origin. The combination of these foreign sequences and locus of insertion in vSB1-007 were likely responsible for its better ND protection performances.
In summary, this example illustrates the importance of the locus of insertion and other regulatory sequences of the NDV expression cassette in the ND protection induced by HVT and MDV serotype 2 vectors.
Example 18
Efficacy of Double HVT-ND+IBD (vHVT304 and vHVT306) or SB1-ND (vSB1-008) in Combination with vHVT13 Recombinant Vaccines, Against Challenge with a Classical IBDV Isolate on D14 in SPF Chickens
The aim of the study was to assess the early IBD efficacy of double HVT recombinants vHVT304 and vHVT306 as well as that of vHVT13 co-administered with a SB1-ND (vSB1-008) recombinant constructs against a virulent infectious bursal disease virus (vIBDV) challenge (Faragher 52/70 strain) performed at 14 days of age in SPF chickens.
On D0, 95 one-day-old SPF chickens were randomly allocated into 9 groups of 10 birds and 1 group of 5 birds (unvaccinated unchallenged control group). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 300 or 1000 pfu as described in the Table 30 below. On D14, blood sample was collected from 5 birds per group for serological testing with the Kit ProFLOK® plus IBD (Synbiotics Corp). The birds (10 birds per group except for group 7 in which 1 bird died before challenge) were challenged by the eye drop (0.05 mL per bird) with 2.5 log 10 EID50.







TABLE 30







Study design and results of IBD efficacy














IBD+


Mean



Vaccine at
ELISA
Number
%
bursal/body



day-old
titer at
Dead/
protect-
weight


Group
(dose in PFU)
D 141
Sick2
tion3
ratio4





G1
vSB1-008 (1000)
0.2
 7/10
 0%
0.0013


G2
vHVT13 (300)
2.7
0/0
100% 
0.0051


G3
vHVT13 (1000)
2.7
0/0
90%
0.0049


G4
vHVT13 +
1.9
1/1
60%
0.0041



vSB1-008 (300)






G5
vHVT13 +
2.4
0/0
70%
0.0041



vSB1-008 (1000)






G6
vHVT304 (300)
2.9
0/0
60%
0.0037


G7
vHVT304 (1000)
2.2
0/0
67%
0.0047


G8
vHVT306 (300)
2.4
0/0
80%
0.0033


G9
vHVT306 (1000)
2.7
0/0
40%
0.0026





1Mean IBD+ ELISA titers expressed in log10 in the serum of 5 birds per group sampled at D14 before challenge;


2Birds sick for more than 2 days or still sick on D25 were considered as sick.


3Protection against clinical signs and severe bursal lesion (bursal score <3)


4The bursal/body weight ratio of the unvaccinated/unchallenged group was 0.0047.






Each group was monitored before and after challenge. IBDV clinical signs were recorded for 11 days after challenge (from D15 to D25). At the end of the post-challenge observation period (D25), all the surviving birds were euthanized and necropsied. Body and bursal weights were recorded. Each bursa of Fabricius (BF) was weighted then stored in individual recipients containing 4% formaldehyde for histology. Histological lesions of the bursa were scored according to the scale presented in Table 31.







TABLE 31







Scoring scale of histological lesions of the bursa of Fabricius*








Score
Histology observation/lesions





0
No lesion, normal bursa


1
1% to 25% of the follicles show lymphoid depletion (i.e.



less than 50% of depletion in 1 affected follicle), influx



of heterophils in lesions


2
26% to 50% of the follicles show nearly complete lymphoid



depletion (i.e. more than 75% of depletion in 1



affected follicle), affected follicles show necrosis



and severe influx of heterophils may be detected


3
51% to 75% of the follicles show lymphoid depletion;



affected follicles show necrosis lesions and a severe influx



of heterophils is detected


4
76% to 100% of the follicles show nearly complete lymphoid



depletion; hyperplasia and cyst structures are detected;



affected follicles show necrosis and severe influx



of heterophils is detected


5
100% of the follicles show nearly complete lymphoid



depletion; complete loss of follicular structure, thickened



and folded epithelium, fibrosis of bursal tissue





*sourced from Monograph No. 01/2008: 0587 of EU Pharmacopoeia “Avian Infectious Bursal Disease vaccine (live)






A bird was considered as affected if it died and/or showed notable sign of disease and/or severe lesions of the bursa of Fabricius (i.e., histology score ≧3).
The mean ELISA IBD+ antibody titer expressed in log 10 before challenge is shown in Table 30. Significant titers were detected in all vaccinated groups that were significantly higher than that of the control group G1. The serology titer was not dose-dependent.
Severe clinical signs were observed after challenge in all birds of the control group G1. Seven out of 10 birds of that group died within the 11 days observation period indicating the high severity of challenge. None of the vaccinated birds showed severe clinical signs after challenge except 1 bird of G4 that died. Percentages of protection against severe bursal lesions are shown in the table 30 above. Significant IBD protection was observed in all groups, the best protection being observed in G2 and G3 (vHVT13 alone). The co-administration of vSB1-008+vHVT13 and the double vHVT304 and vHVT306 constructs induced similar levels of IBD protection. The protection was not dose-dependent at the tested doses. The mean bursal/body weight ratios are also shown in Table 30. Ratios in all vaccinated groups were higher than those of the challenged control group.
In conclusion, these data indicate that both the combination of a SB1-ND vector with a single HVT-IBD or double HVT expressing both NDV-F and IBDV-VP2 induce IBD antibodies and early IBD protection in a severe IBDV challenge model.
Example 19
Efficacy of Single HVT-ND (vHVT114) or SB1-ND (vSB1-007 and vSB1-009) in Combination with vHVT13 Recombinant Vaccines, Against Challenge with a Very Virulent IBDV Isolate on D23 in Commercial Broiler Chickens
The aim of the study was to assess the IBD efficacy of vHVT13 co-administered with an HVT-ND (vHVT114) or SB1-ND (vSB1-007 and vSB1-009) recombinant constructs against a very virulent infectious bursal disease virus (vvIBDV) challenge (91-168/980702 isolate) performed at 23 days of age in commercial broiler chickens.
On D0, 90 one-day-old broiler chickens were randomly allocated into 7 groups of 12 birds and 1 group of 6 birds (unvaccinated unchallenged control group). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 3000 pfu as described in the Table 32. On D14, blood sample was collected from 5 birds per group for serological testing with the Kit ProFLOK® plus IBD (Synbiotics Corp). The serum of 10 extra one-day-old broiler chickens was tested at D0 with the same kit to evaluate the level of IBDV maternal antibody. The birds (10 birds per group) were challenged by the eye drop (0.05 mL per bird) on D23 with 4.3 log 10 EID50 of the vvIBDV 91-168 isolate.
Each group was monitored before and after challenge. IBDV clinical signs were recorded for 11 days after challenge (from D23 to D33). At the end of the post-challenge observation period (D33), all the surviving birds were euthanized and necropsied. Body and bursal weights were recorded. Each bursa of Fabricius (BF) was weighted then stored in individual recipients containing 4% formaldehyde for histology. Histological lesions of the bursa were scored according to the scale presented in Table 31.
A bird was considered as affected if it died and/or showed notable signs of disease and/or severe lesions of the bursa of Fabricius (i.e., histology score ≧3).







TABLE 32







Study design and serology results












IBD+ ELISA
Mean



Vaccine at
titer at
bursal/body


Group
day-old (D0)
D231
weight ratio2





G1
—
3.9
0.0007


G2
vHVT13
4.0
0.0015


G3
vHVT114 + vHVT13
4.1
0.0015


G4
vSB1-007 + vHVT13
3.8
0.0018


G5
vSB1-009 + vHVT13
4.0
0.0019





1Mean IBD+ ELISA titers expressed in log10 in the serum of 5 birds per group sampled at D23 before challenge;


2The bursal/body weight ratio of the unvaccinated/unchallenged group was 0.0047






The mean ELISA IBD+ serological titer at D0 was 4.36±0.01 log 10 indicating a very high level of IBD maternal antibody at hatch. At D23, the mean ELISA IBD+ titer was still high (3.9) in the control G1. ELISA mean titers in the vaccinated groups were not significantly different from those of the control group.
Neither morbidity nor mortality was observed in any of the groups after challenge. Percentages of protection against severe bursal lesions are shown in Table 32 above. The result showed that co-administration of vHVT114, vSB1-007 or vSB1-009 did not interfere with vHVT13-induced IBD protection indicating a lack of interference. Similarly, the mean bursal/body weight ratios of the vaccinated groups were similar and clearly higher than that of the control group, indicating IBD protection and no difference between the vaccination regimens.
In conclusion, the data indicate the compatibility between vHVT114, vSB1-007 or vSB1-009 and vHVT13 for IBD protection.
Example 20
Efficacy of Double HVT-ND+IBD (vHVT304 and vHVT306) Associated or not with SB-1 and of SB1-ND (vSB1-007 and vSB1-008) in Combination with vHVT13 Recombinant Vaccines, Against Challenge with a Variant E IBDV Isolate on D28 in SPF Chickens
The aim of the study was to assess the efficacy of two double HVT (HVT-ND+IBD: vHVT304 and vHVT306) or two vSB-1-NDV in combination with vHVT13 (vSB1-007+vHVT13, vSB1-008+vHVT13) vectored vaccines administered subcutaneously (SC) to day-old SPF chicks and challenged with IBDV-Variant (VAR-E) 28 days post-vaccination.
On D0, 105 one-day-old SPF chickens were randomly allocated into 7 groups of 15 birds including a group of challenged controls (G6) and unchallenged controls (G7). The birds of groups G1 to G5 were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant and/or SB-1 vaccines containing each a target dose of 2000 pfu. The design of the study is shown in Table 33 below. On D28, all birds from groups G1 to G6 were challenged by the eye drop (0.03 mL containing 3 log 10 EID50 per bird) of the IBDV variant E isolate from University of Delaware (USA). Each group was monitored before and after challenge. Eleven days post-challenge, birds were weighed and necropsied. The bursa were collected and weighed. The bursal/body weight ratio (bursa weight/body weight ratio×100) was calculated.







TABLE 33







Study design and results of IBD efficacy












Vaccine at
Mean bursal/body



Group
day-old
weight ratio (*100)






G1
vHVT304
0.33



G2
vHVT304 + SB-1
0.33



G3
vHVT306
0.29



G4
vHVT13 + vSB1-007
0.49



G5
vHVT13 + vSB1-008
0.47



G6
- (challenged)
0.13



G7
- (unchallenged)
0.46









The mean bursal/body weight ratios are shown in Table 33. The challenged control birds had a severe bursal atrophy compared to unchallenged ones. The vSB1-007 and vSB1-008 vaccines did not interfere on vHVT13-induced protection (G4 and G5). The bursal/body weight ratios of birds vaccinated with the double HVT (HVT-ND+IBD) were slightly lower than the unchallenged control group but were clearly higher than the challenged control groups. Furthermore, the SB-1 serotype 2 Marek's disease vaccine did not interfere with vHVT304-induced IBD protection.
In conclusion, these data indicate that both the combination of a SB1-ND vector with a single HVT-IBD or double HVT expressing both NDV-F and IBDV-VP2 induce IBD protection in a variant E IBDV challenge model.
Example 21
Lack of Interference of vHVT114, vSB1-009 and/or SB-1 on vHVT13 Induced Variant E IBD Protection in SPF Chickens
The aim of the study was to assess the IBD efficacy of vHVT13 when administered by SC or in ovo route concomitantly with vHVT114, vSB1-009 and/or SB-1 in SPF chicks in an IBDV-Variant (VAR-E) at D28 challenge model.
75 one-day-old SPF chickens and 75 SPF 18 to 19 day-old chicken embryo were randomly allocated into 5 groups (G1 to G5 and G6 to G10, respectively) including a group of challenged controls (G4 and G9, respectively) and unchallenged controls (G5 and G10, respectively). The birds of groups G1 to G3 were injected by subcutaneous injection in the neck at D0 with 0.2 mL of vaccines containing each a target dose of 3000 pfu except for SB-1 which had a target dose of 1000 PFU. Birds from G6 to G8 received the same vaccine doses but in 0.05 mL volume by the in ovo route 2-3 days before hatch. The design of the study is shown in Table 34 below. At 28 days of age, all birds from groups G1 to G4 and G6 to G9 were challenged by the eye drop (0.03 mL containing 3 log 10 EID50 per bird) of the IBDV variant E isolate from University of Delaware (USA). Each group was monitored before and after challenge. Eleven days post-challenge, birds were weighed and necropsied. The bursa were collected and weighed. The bursal/body weight ratio (bursa weight/body weight ratio×100) was calculated.







TABLE 34







Study design and results of IBD efficacy












Adminis-
Mean bursal/




tration
body weight


Group
Vaccine at day-old
route
ratio (*100)





G1
vHVT13 + vHVT114 + SB-1
SC
0.56


G2
vHVT13 + vHVT114 + vSB1-009
SC
0.58


G3
vHVT13 + vSB1-009
SC
0.52


G4
- (challenged)
SC
0.13


G5
- (unchallenged)
SC
0.51


G6
vHVT13 + vHVT114 + SB-1
In ovo
0.54


G7
vHVT13 + vHVT114 + vSB1-009
In ovo
0.47


G8
vHVT13 + vSB1-009
In ovo
0.53


G9
- (challenged)
In ovo
0.14


G10
- (unchallenged)
In ovo
0.58









The mean bursal/body weight ratios are shown in Table 34. The challenged control birds (G4 and G9) had a severe bursal atrophy compared to unchallenged ones. The bursal/body weight ratios of the vaccinated groups (G1 to G3 and G6 to G8) were similar to those of the unchallenged control groups (G5 and G10) and well above those of the challenged control groups (G4 and G9). The lack of interference of vHVT114 on vHVT13-induced IBD protection after both SC or in ovo routes was surprising and confirmed data obtained in examples 15 and 19.
In conclusion, these data indicate clearly the compatibility of vHVT114+vSB1-009 or +SB-1 and of vSB1-009 with vHVT13 when administered by SC or in ovo route in a variant E IBDV challenge model.
Example 22
Efficacy of vHVT114 and vHVT13 and SB1 or vSB1-009 Vectors Against Very Virulent Plus Marek's Disease Challenge
The aim of this study was to evaluate the Marek's disease efficacy induced by different combinations of vaccines including vHVT114, vHVT13, SB-1 and/or vSB1-009 administered by the SC route to one-day-old SPF chicks and challenged 4 days later with the very virulent plus Marek's disease virus (vv+MDV) T-King isolate.
On D0, 100 one-day-old SPF chickens were randomly allocated into 5 groups of 20 birds. The birds from groups 1 to 3 were injected by subcutaneous injection in the neck at D0 with 0.2 mL of vaccines containing a target dose of 2000 pfu for each vaccine except for SB-1 for which the target dose was 1000 pfu. Birds from groups 4 and 5 were non-vaccinated and were used as sham controls challenged (group 4) or unchallenged (group 5). The study design is shown in the Table 35. On D4, All birds from groups 1 to 4 were challenged with 0.2 mL of the vv+MDV T-King isolate using the intraperitoneal route of administration.







TABLE 35







Study design and MD protection results











Vaccine at
Number of MD
Percentage of


Group
day-old (D0)
positive/total
protection





G1
vHVT13 + SB-1
7/20
65%


G2
vHVT114 + SB-1
7/20
65%


G3
vHVT13 + vHVT114 +
7/20
65%



vSB1-009




G4
- (challenged)
20/20 
 0%


G5
- (unchallenged)
0/20
100% 









Each group was monitored daily for any unfavourable reactions before and after challenge. At day 49, all live birds were terminated and necropsied to examine for gross lesions associated with Marek's disease. Chickens were classified as positive for infection with Marek's disease if nervous signs, such as paralysis, locomotive signs attributable to the disease, and severe emaciation or depression are observed, if mortality directly attributable to Marek's Disease occurs, or if gross lesions are observed at necropsy. Lesions might include, but not be limited to, the following: liver, heart, spleen, gonads, kidneys, and muscle lesions
Results of protection are shown in the Table 35 above. All vaccinated groups (G1 to G3) performed equally, inducing a partial (65%) MD protection as expected in this very severe and early challenge model. These results indicated that the vector vaccine candidates retain their ability to protect against Marek's disease.
Example 23
Evaluation of Marek's Disease Efficacy of the SB1-ND Vector Combined with HVT-IBD Vector
The synergy between parental HVT and SB-1 in inducing a protection against Marek's disease is well known. The SB-1 vector expressing a foreign gene can therefore be mixed with either parental HVT or vectored HVT expressing another foreign gene in order to get a bivalent or a trivalent vaccine solution, respectively. An example of evaluation of Marek's disease efficacy induced by a combination of vSB1-009 with vHVT114 and vHVT13 is shown above (example 22). Marek's disease (MD) efficacy is also demonstrated for Marek's disease vectored recombinants either alone or in combination in other MD challenge models including virulent Marek's disease (vMD) challenge such as GA22, very virulent Marek's disease (vvMD) challenge such as RB1B and/or very virulent plus Marek's disease (vv+MD) challenge such as the T. King virus. One-day-old chickens are inoculated subcutaneously or 18-19-day-old embryonated eggs are inoculated with a 0.2 ml dose or 0.05 ml dose, respectively, of the test viruses. At five days of age the vaccinated chickens and naïve controls are challenged with the relevant Marek's challenge virus (v, vv, or vv+MDV). The challenged birds are observed until seven weeks of age. All birds are terminated and necropsied to observe for grossly visible lesions associated with Marek's disease as described in Example 22.
Example 24
Efficacy of vSB1-004, vSB1-006, vSB1-007, vSB1-008, SB1-Vectored ND Vaccine Alone or in Association with vHVT13 HVT-Vectored IBD Vaccine, and the vHVT302 and vHVT304 Vaccines Against Challenges with NDV Texas GB Strain at 14 and/or 28 Days of Age in SPF Chickens
The aim of the study was to assess the efficacy of combinations of different Marek's disease vector vaccines expressing the NDV F and/or the IBDV VP2 gene against Newcastle disease challenge (Texas GB strain, genotype II) performed at 14 and/or 28 days of age in SPF chickens.
The characteristics of the 6 NDV recombinant vaccine candidates tested in this study are described in the Table 36 below.







TABLE 36







characteristics of the 6 NDV recombinant


vaccine candidates tested in this study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vSB1-004
SB-1*
mCMV
Wt-VIId
SV40
SORF4/




IE


US10


vSB1-006
SB-1
SV40
Opt-VIId
Synthetic
UL55/







LORF5


vSB1-007
SB-1
SV40
Opt-VIId
(endogeneous
gC






from gC gene)



vSB1-008
SB-1
SV40
Opt-CA02
Synthetic
UL55/







LORF5


vHVT302
vHVT13
US10
Opt-VIId
US10
US10


vHVT304
vHVT13
SV40
Opt-VIId
Synthetic
IG2









On D0, 225 one-day-old SPF chickens were randomly allocated into 9 groups of 15 birds (G1 to G9a challenged at D14) and 6 groups of 15 birds (G1b, G3b, G4b, G5b, G8b, G9b challenged at D28). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL containing a target dose of 2000 pfu for recombinant vaccines. The design of the study is shown in Table 37 below. The birds were challenged by the intramuscular route on D14 or D28 with 4.3 and 4.2 log 10 EID50 (0.1 mL) velogenic ND Texas GB (genotype II) strain, respectively.







TABLE 37







Results of ND efficacy












% ND protection
% ND protection



Vaccine at
after ND challenge
after ND challenge


Group
day-old (D0)
at 14 days of age
at 28 days of age





G1a & 1b
—
  0%
  0%


G2a
vSB1-004
 20%
 ND*


G3a & 3b
vSB1-006
26.6%
73.3%


G4a & 4b
vSB1-007
33.3%
93.3%


G5a & 5b
vSB1-008
46.6%
86.6%


G6a
vSB1-006 +
 14%
ND



vHVT13




G7a
vSB1-008 +
21.4%
ND



vHVT13




G8a & 8b
vHVT302
13.3%
 80%


G9a & 9b
vHVT304
33.3%
93.3%





*ND = not done






Each group was monitored before and after challenge. NDV clinical signs after challenge were recorded. One bird died in G6 and G7 before challenge reducing the number of birds from 15 to 14 in these groups.
Percentages of clinical protection (including protection against both mortality and morbidity) are reported in Table 37 above. Full susceptibility was observed in the non-vaccinated challenged control group G1a and G1b thus validating the high severity of challenge. Partial protections ranging from 13.3 to 46.6% were observed after challenge at D14, the highest levels of protection being induced by vSB1-008, vSB1-007 and vHVT304. Protection levels after ND challenge at D28 were much higher for all vaccinated groups and were again slightly higher in the groups vaccinates with vSB1-008, vSB1-007 or vHVT304. These results indicated that ND protection levels were dependent on the date of challenge and on the construct. The vSB1-008 and vSB1-007 constructs performed slightly better than vSB1-004 and vSB1-006, and the vHVT304 performed slightly better than vHVT302, indicating that different characteristics of the constructs are playing a role in the performances of MDV-based vector vaccines.
In conclusion, the results of this study showed that ND protection levels induced by Marek's disease vectors expressing NDV F gene may depend on different parameters including the vector, the locus of insertion, the F gene, the promoter, the poly-adenylation site and the challenge conditions.
Example 25
Efficacy of Double HVT-ND+IBD vHVT304 and vHVT306 Vaccines Against Challenges with NDV Texas GB Strain at 14 and/or 28 Days of Age in SPF Chickens
The aim of the study was to assess the efficacy of HVT-vectored vaccine expressing both NDV F and IBDV VP2 genes against Newcastle disease challenge (Texas GB strain, genotype II) performed at 14 and/or 28 days of age in SPF chickens.
The characteristics of the 2 recombinant vaccine candidates tested in this study are described in the Table 38 below.







TABLE 38







Characteristics of the recombinant vaccine


candidates used in this study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT304
vHVT13
SV40
Opt-VIId
Synthetic
IG2


vHVT306
vHVT13
SV40
Opt-VIId
Synthetic
SORF3-US2









On D0, 90 one-day-old SPF chickens were randomly allocated into 3 groups of 15 birds (G1a to G3a challenged at D14) and 3 groups of 15 birds (G1b to G3b challenged at D28). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL containing a target dose of 2000 pfu for recombinant vaccines. The design of the study is shown in Table 39 below. The birds were challenged by the intramuscular route on D14 or D28 with a target dose of 4.0 log 10 EID50 (0.1 mL) velogenic ND Texas GB (genotype II) strain.







TABLE 39







Results of ND efficacy












% ND protection
% ND protection



Vaccine at
after ND challenge
after ND challenge


Group
day-old (D0)
at 14 days of age
at 28 days of age





G1a & 1b
—
  0%
  0%


G2a & 2b
vHVT304
26.7%
92.9%


G3a & 3b
vHVT306
33.3%
86.7%









Each group was monitored before and after challenge. NDV clinical signs after challenge were recorded. One bird died in G2b before challenge reducing the number of birds from 15 to 14 in this group.
Percentages of clinical protection (including protection against both mortality and morbidity) are reported in Table 39 above. Full susceptibility was observed in the non-vaccinated challenged control group G1a and G1b thus validating the high severity of challenge. Protections levels after challenge at D14 were much lower than those obtained after challenge at D28. These vaccine candidates had the same NDV F expression cassette inserted into 2 different loci of vHVT13 genome. They performed equally in terms of ND protection in the tested conditions, indicating that both insertion loci (IG2 and SORF3-US2) are equally suitable for NDV F cassette insertion.
In conclusion, the results of this study showed that ND protection levels induced by Marek's disease vectors expressing NDV F gene depend on different parameters including the vector, the locus of insertion, the F gene, the promoter, the poly-adenylation site and the challenge conditions.
Example 26
ND Early Efficacy Induced by Double HVT-ND+IBD (vHVT302, vHVT303, and vHVT304) or SB1-vectors (vSB1-006 and vSB1-007) in One Day-Old SPF Chickens Against a Velogenic Genotype V NDV Challenge
The objective of the study was to evaluate the efficacy of three double HVT-ND+IBD (vHVT302, vHVT303, and vHVT304) and two SB1-ND vectors (vSB1-006 and vSB1-007) in one day-old SPF chickens against a velogenic genotype V (Chimalhuacan) NDV challenge performed at D14.
The characteristics of the 5 recombinant vaccine candidates tested in this study are described in the Table 40 below.







TABLE 40







Characteristics of the recombinant vaccine


candidates used in this study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT302
vHVT13
US10
Opt-VIId
US10
US10


vHVT303
vHVT13
US10
Opt-V
US10
US10





(CA02)




vHVT304
vHVT13
SV40
Opt-VIId
Synthetic
IG2


vSB1-006
SB-1
SV40
Opt-VIId
Synthetic
UL55/







LORF5


vSB1-007
SB-1
SV40
Opt-VIId
(endogeneous
gC






from gC gene)









Six groups (1 and 2) of ten one-day-old specific pathogen free (SPF) white Leghorn chicks were randomly constituted. Birds from groups 2 to 6 were vaccinated by the subcutaneous route (nape of the neck) with a target dose of 2000 PFU as shown in the Table 41 below. Chicks from group 1 were not vaccinated and were kept as control birds. At 2 week-of-age, all birds were challenged with the genotype V Mexican Chimalhuacan (Mex V) velogenic NDV strain. The challenge was performed by the intramuscular (IM) route using 105 Egg Infectious Dose 50 (EID50) diluted in 0.2 ml of physiological sterile water. All birds were monitored until 14 days post-challenge. After challenge, health status of each bird was scored daily as follows: healthy/with specific symptoms (ruffled feathers, prostration, torticollis, tremor)/dead. Any bird that showed specific symptoms for more than 2 days or was noted sick on D28 was taken into account for calculation of morbidity.







TABLE 41







Results of early ND protection induced by different MDV vectored


candidates expressing NDV F gene in SPF day-old chicks













Target dose
Protection
Protection




(PFU) under 0.2
against
against


Group
Vaccine
mL (actual dose)
mortality
morbidity





G1
—
—
 0%
 0%


G2
vHVT302
2000 (4427)
50%
10%


G3
vHVT303
2000 (ND)
10%
 0%


G4
vHVT304
2000 (1169)
80%
60%


G5
vSB1-006
2000 (1720)
60%
40%


G6
vSB1-007
2000 (1564)
80%
50%









Results of protection are summarized in Table 41. All control birds died after ND challenge. Variable levels of ND protection were induced by the different tested vaccines ranging from 10% to 80% and from 0% and 60% in terms of protection against mortality and morbidity, respectively. The vHVT304 candidate induced a better protection than the vHVT303 and vHVT302 candidates; this may be due to the exogenous SV40 promoter placed in front of the NDV F gene. The vSB1-007 performed slightly better than the vSB1-006. Furthermore, performances obtained with vHVT304 were comparable to those obtained with vSB1-007 indicating that different Marek's disease vectors can reach the same level of ND protection.
In conclusion, this study demonstrates that both double HVT-ND+ IBD and SB1-ND vectored vaccines can reach significant levels of ND protection in a very severe and early NDV challenge model.
Example 27
ND Efficacy Induced by the Double HVT-ND+IBD vHVT306 Administered by In Ovo or SC Route to One Day-Old SPF Chickens Against a Velogenic Genotype V NDV Challenge Performed at D28
The objective of the study was to evaluate the efficacy of one double HVT-ND+IBD (vHVT306) administered by the in ovo or SC route to SPF chickens against a velogenic genotype V (Chimalhuacan) NDV challenge performed at 28 days of age.
The characteristics of the vHVT306 recombinant vaccine candidate tested in this study are described in Table 42 below. The single HVT-IBD vector vaccine vHVT13 was used as a control.







TABLE 42







Characteristics of the recombinant vaccine


candidate used in this study













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT306
vHVT13
SV40
Opt-VIId
Synthetic
SORF3-US2









On day −3, 40 SPF embryonated eggs aged around 18 days and 18 hours of incubation were randomly allocated into 2 groups of 20 eggs each. On D0, one group of 12 day-old SPF chicks was added. The definition of groups is given in Table 43 below. The vaccination was performed on D-3 (in ovo route) or on D0 (SC route, in the back of the neck) and the target dose of vHVT306 and vHVT13 was 2000 PFU/bird. For the in ovo route, hatchability, viability (until D28) and growth of the birds (between hatching and D28) were monitored.
On D28, 10 birds per group were challenged with virulent ND Chimalhuacan strain. The challenge was performed by the intramuscular (IM) route using 105 Egg Infectious Dose 50 (EID50) diluted in 0.2 ml of physiological sterile water. Birds were monitored until 14 days post-challenge. Specific clinical signs and mortality were recorded. Any bird that showed specific symptoms for more than 2 days or was noted sick on D42 was taken into account for calculation of morbidity. Five and seven days post-challenge (i.e. on D33 and D35), oropharyngeal swab was taken from each surviving bird. All the swabs were analyzed by specific NDV qRT-PCR.







TABLE 43







Results of ND protection induced by vHVT306 MDV vectored


candidate expressing both NDV F and IBDV VP2 genes administered


by the SC or in ovo route into SPF chicks













Hatch-
Protection
% birds shed-




ability/
against
ding at 5 dpi/




viability
mortality/
7 dpi (mean


Group
Vaccine/route
(%)
morbidity
log10 titer*)





G1
vHVT13/in ovo
100%/100%
0%/0%
(not tested)


G2
vVHT306/in ovo
100%/100%
100%/100%
0% (2.7)/






0% (2.7)


G3
vHVT306/SC
—
100%/100%
20% (3.2)/






10% (2.9)





*The threshold titer of the real time RT PCR was set at 2.7 log10 equivalent EID50






Full hatchability was recorded after in ovo vaccination in groups 1 and 2 and all hatched birds survived up to D28. No difference in body weights was detected between the two groups at both D0 and D28 confirming the perfect safety of vHVT306 when administered in ovo. Results of protection are summarized in Table 43. All vHVT13-vaccinated control birds died by 4 days after ND challenge. Full clinical ND protection was induced by vHVT306 administered by both routes. Furthermore, no shedding was detected after in ovo administration whereas only a few birds shed detectable amount of challenge virus after SC administration.
In conclusion, this study demonstrates that the double HVT-ND+IBD vHVT306 induce excellent level of ND protection by SC or in ovo administration routes in a very severe heterologous NDV challenge model.
Example 28
Efficacy of Double HVT-ND+IBD (vHVT302, vHVT303 and vHVT304) Recombinant Vaccines, Against Challenge with a Classical IBDV Isolate on D15 in SPF Chickens
The aim of the study was to assess the early IBD efficacy of double HVT recombinants vHVT302, vHVT303 and vHVT304 recombinant constructs against a virulent infectious bursal disease virus (vIBDV) challenge (Faragher 52/70 strain) performed at 15 days of age in SPF chickens.
The characteristics of the 3 double HVT-ND+IBD recombinant vaccine candidates tested in this study are described in the Table 44 below.







TABLE 44







Characteristics of the expression cassettes


of double HVT recombinants













Parental






Name
virus
Promoter
F gene
Poly-A
Locus





vHVT302
vHVT13
US10
Opt-VIId
US10
US10


vHVT303
vHVT13
US10
Opt-V (CA02)
US10
US10


vHVT304
vHVT13
SV40
Opt-VIId
Synthetic
IG2









On D0, 40 one-day-old SPF chickens were randomly allocated into 4 groups of 10 birds including one control groups (G1) that was vaccinated with vSB1-004, a SB-1 vector expressing NDV F gene. Five other SPF birds were kept unvaccinated and unchallenged for bursal/body weights evaluation. The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 2000 pfu as described in the Table 45 below. On D15, blood sample was collected from all birds per group (10 birds per group except for groups 1 and 3 in which 1 bird died before blood sampling) for serological testing with the Kit ProFLOK® plus IBD (Synbiotics Corp). On D15, birds from all 4 groups were challenged by the eye drop (0.05 mL per bird) with 2.5 log 10 EID50.







TABLE 45







Study design and results of IBD efficacy














ELISA
Number

Mean bursal/



Vaccine at
IBD+ titer
Dead/Sick
% pro-
body weight


Group
day-old
(log10)
(total)1
tection2
ratio4















G1
vSB1-004
0.25
1/9 (9) 
 0%
0.0014


G2
vHVT302
2.6
0/1 (10)
80%
0.0043


G3
vHVT303
3.0
0/0 (9) 
100% 
0.0053


G4
vHVT304
2.4
0/0 (10)
80%
0.0034





1Birds sick for more than 2 days or still sick on D25 were considered as sick. The number in brackets is the total number of birds in the group that were challenged.


2Protection against clinical signs and severe bursal lesion (bursal score <3)


4The bursal/body weight ratio of the unvaccinated/unchallenged group was 0.0043.






Each group was monitored before and after challenge. IBDV clinical signs were recorded for 11 days after challenge (from D15 to D25). At the end of the post-challenge observation period (D25), all the surviving birds were euthanized and necropsied. Body and bursal weights were recorded. Each bursa of Fabricius (BF) was weighted then stored in individual recipients containing 4% formaldehyde for histology. Histological lesions of the bursa were scored according to the scale presented in Table 46.







TABLE 46







Scoring scale of histological lesions of the bursa of Fabricius*








Score
Histology observation/lesions





0
No lesion, normal bursa


1
1% to 25% of the follicles show lymphoid depletion (i.e. less



than 50% of depletion in 1 affected follicle), influx of



heterophils in lesions


2
26% to 50% of the follicles show nearly complete lymphoid



depletion (i.e. more than 75% of depletion in 1 affected



follicle), affected follicles show necrosis and severe influx



of heterophils may be detected


3
51% to 75% of the follicles show lymphoid depletion; affected



follicles show necrosis lesions and a severe influx of



heterophils is detected


4
76% to 100% of the follicles show nearly complete lymphoid



depletion; hyperplasia and cyst structures are detected;



affected follicles show necrosis and severe influx of



heterophils is detected


5
100% of the follicles show nearly complete lymphoid depletion;



complete loss of follicular structure, thickened and folded



epithelium, fibrosis of bursal tissue





*sourced from Monograph No. 01/2008: 0587 of EU Pharmacopoeia “Avian Infectious Bursal Disease vaccine (live)






A bird was considered as affected if it died and/or showed notable sign of disease and/or severe lesions of the bursa of Fabricius (i.e., histology score ≧3).
The mean ELISA IBD+ antibody titer expressed in log 10 before challenge is shown in Table 45. Significant titers were detected in all vaccinated groups that were significantly higher than that of the control group G1. The serology titer was slightly higher in G3 (vHVT303).
Severe clinical signs were observed after challenge in all 9 birds of the control group G1, which lead to the death of 1 bird. Only one vaccinated bird in G2 (vHVT302) showed clinical signs after challenge. Percentages of protection against severe bursal lesions are shown in Table 45 above. Significant IBD protection was observed in all vaccinated groups, a full protection being observed in G3 (vHVT303). The mean bursal/body weight ratios are also shown in Table 45. Ratios in all vaccinated groups were higher than those of the challenged control group G1 and not significantly different from the unvaccinated and unchallenged control group.
In conclusion, these data indicate that the three double HVT-IBD+ND tested in this study induced IBD antibodies and early IBD protection in a severe IBDV challenge model.
Example 29
Efficacy of Five Different HVT-ND Vaccine Candidates Against Challenges with Velogenic NDV ZJ1 (Genotype VIId) Isolate at 14 Days of Age in SPF Chickens
The aim of the study was to assess the efficacy of 5 single HVT recombinant constructs (vHVT39, vHVT110, vHVT111, vHVT112 and vHVT113) expressing the NDV F gene against Newcastle disease challenge with velogenic NDV ZJ1 (genotype VIId) isolate performed at 14 days of age in SPF chickens.
The characteristics of these 5 vaccine candidates are described in Table 47 below.







TABLE 47







Characteristics of the HVT-ND recombinant


viruses used in the challenge study













Parental






Name
virus
Promoter
F gene*
Poly-A
Locus





vHVT039
HVT
MDV gB
Wtnm-Texas
SV40
IG1


vHVT110
HVT
MCMV IE
Wt-VIId
SV40
IG1


vHVT111
HVT
SV40
Wt-VIId
SV40
IG1


vHVT112
HVT
MCMV IE
Wt-YZCQ
SV40
IG1


vHVT113
HVT
MCMV IE
Wt-Texas
SV40
IG1





*Wt means that the wild type velogenic F gene sequence was used but the cleavage site was modified to that of a lentogenic virus. Wtnm means that the cleavage site of the wild type sequence was not modified. The Texas velogenic strain belongs to genotype IV and YZCQ to the genotype VIId.






On D0, 72 one-day-old SPF chickens were randomly allocated into 5 groups of 12 birds (vaccinated) and 1 group of 12 birds (non-vaccinated controls). The birds were injected by subcutaneous injection in the neck at D0 with 0.2 mL of recombinant vaccines containing a target dose of 6000 pfu as described in Table 48 below. The birds were challenged by the intramuscular route on D14 with 5 log 10 EID50 of NDV ZJ1/2000 (genotype VIId) velogenic strain.







TABLE 48







Results of ND efficacy









% clinical protection











Vaccine at
Protection against
Mean shedding titer


Group
day-old (D0)
mortality/morbidity
(log10) at 2/4 dpi





G1
—
 0%/0%
3.5/—





(all dead)


G2
vHVT039
25%/8%
2.5/4.8


G3
vHVT110
100%/83%
1.8/2.0


G4
vHVT111
100%/67%
1.8/2.8


G5
vHVT112
 75%/42%
1.7/3.4


G6
vHVT113
 83%/25%
1.4/3.3









Each group was monitored before and after challenge. NDV clinical signs and mortality were recorded after challenge. Oropharyngeal swabs were taken at 2 and 4 days post-infection (dpi) for evaluation of viral load by real time RT-PCR using the method described by Wise et al. (2004; Development of a Real-Time Reverse-Transcription PCR for Detection of Newcastle Disease Virus RNA in Clinical Samples. J Clin Microbiol 42, 329-338).
Percentages of protection against mortality and morbidity are reported in Table 48 above. Full susceptibility was observed in the non-vaccinated challenged control group G1 thus validating the high severity of the challenge. Vaccines induced variable levels of protection against mortality (25-100%) or against morbidity (8%-83%). The best protection level was induced by vHVT110 whereas the lowest one was induced by vHVT039, the other candidates giving intermediate results. Results of oropharyngeal shedding at 2 and 4 dpi are also shown in Table 48 above and are in line with those of clinical protection. These vaccine candidates differ in their promoter and F gene sequence. These results show that both of these parameters are important for the design of optimal HVT-ND vaccine candidate.
In conclusion, the results of this study showed the importance of promoter and F gene sequence in the ND efficacy induced by HVT-vectored ND vaccine candidates.
Example 30
Evaluation of the Newcastle Disease Efficacy Induced by Double SB1 Constructs Expressing IBDV VP2 and NDV F
The aim of the study is to assess the efficacy of double SB1 constructs expressing IBDV VP2 and NDV F against Newcastle disease challenge.
On D0, one-day-old SPF chickens are randomly allocated into several groups of 10-20 birds, including vaccinated and non-vaccinated groups. The birds of the vaccinated groups are injected by subcutaneous injection in the neck at D0 with 0.2 mL containing a target dose of 1000 to 5000 pfu of recombinant vaccines. Alternatively, the same dose in 0.05 mL may be administered in ovo 2 or 3 days before hatch. The birds (at least one vaccinated and one non vaccinated group) are challenged by the intramuscular route at different time after vaccination: for instance, D14, D28 or D42 with about 4.0 log 10 EID50 (0.1 mL) of a velogenic NDV strain such as Texas GB (genotype II), ZJ1 (genotype VIId), Chimalhuacan (genotype V) strain.
Each group is monitored clinically before and after challenge. NDV clinical signs (morbidity) and mortality are recorded after challenge. Percentages of clinical protection in all groups are calculated. At least 90% of non-vaccinated challenged SPF birds should die or be severely sick after challenge to validate the severity of challenge. Oropharyngeal and cloacal swabs can be samples at different times after challenge such as 3, 5, 7 and 9 days post-challenge and the viral load can be estimated by real-time RT-PCR. The best candidates will be those who induced the highest level of clinical protection and the lowest level of viral load in the swabs. A similar study can be performed in broilers containing NDV maternal antibodies; however, these maternal antibodies may potentially protect the non-vaccinated birds if the challenge is performed early. The double SB1 construct may also be tested in combination with other Marek's disease vaccine or vector vaccines.
Example 31
Evaluation of the Infectious Bursal Disease Efficacy Induced by Double SB1 Constructs Expressing IBDV VP2 and NDV F
The aim of the study is to assess the IBD efficacy of double SB1 expressing both the IBDV VP2 and the NDV F.
One-day-old SPF chickens are randomly allocated into several groups of 10 to 20 birds including vaccinated and non-vaccinated controls. Non-vaccinated controls will be separated into 2 subgroups including challenged and unchallenged birds. The birds of vaccinated groups are injected by subcutaneous injection in the neck at D0 with 0.2 mL of vaccines containing each a target dose of 1000 to 5000 pfu. Alternatively, the same dose in 0.05 mL may be administered in ovo 2 or 3 days before hatch. At different times after vaccination such as 14, 21, 28 or 42 days post-vaccination, all birds from vaccinated groups and the challenged controls are challenged by the eye drop (0.03 mL containing 2 to 4 log 10 EID50 per bird) of a virulent IBDV (such as the Faragher or the US standard strain), a very virulent IBDV such as the 91-168 isolate or a variant IBDV isolate such as the US Delaware variant E isolate. Each group is clinically monitored before and after challenge. Birds can be necropsied 4 or 5 days post-challenge for bursal gross lesions evaluation. They can also be necropsied 10 to 11 days post-challenge. Gross and/or histological lesions can be evaluated. Furthermore, birds and bursa are weighed the bursal/body weight ratios (bursa weight/body weight ratio×100) are calculated compared to those of the non-vaccinated unchallenged group. Control SPF challenged birds must show clinical signs and/or have significant gross and/or histological lesions, and/or should have a bursal/body weight ratio significantly lower than the unvaccinated unchallenged control birds to validate the severity of challenge. The efficacy of the vaccine is evaluated by comparing these parameters with unvaccinated/challenged and unvaccinated/unchallenged groups. Such study may be performed in broiler chickens containing IBDV maternal antibodies; however, these maternal antibodies may potentially protect the non-vaccinated birds if the challenge is performed early. The double SB1 construct may also be tested in combination with other Marek's disease vaccine or vector vaccines.
Example 32
Evaluation of the Marek's Disease Efficacy Induced by Double SB1 Constructs Expressing IBDV VP2 and NDV F
The aim of the study is to evaluate Marek's disease efficacy induced by the SB1 vectors expressing both IBDV VP2 and NDVF.
One-day-old SPF chickens are randomly allocated into several groups of 20 to 50 birds including vaccinated and non-vaccinated controls. Non-vaccinated controls may be separated into 2 subgroups including challenged and unchallenged birds. The birds of vaccinated groups are injected by subcutaneous injection in the neck at D0 with 0.2 mL of vaccines containing each a target dose of 1000 to 5000 pfu. Alternatively, the same dose in 0.05 mL may be administered in ovo 2 or 3 days before hatch. At different times after vaccination such as 3 to 10 days post-vaccination, all birds from vaccinated groups and the challenged controls are challenged by the intraperitoneal route with 0.2 mL of a Marek's disease virus (MDV) strain. MDV strain may be of several pathotypes such as virulent MDV (vMDV) including the JM or GA22 isolate, very virulent MDV (vvMDV) such as the RB-1B or Md5 isolate, very virulent plus (vv+MDV) such as the T-King or 648A isolate. MDV challenge strain inoculum are prepared by infecting chickens, harvesting and freezing their blood cells into liquid nitrogen in presence of a cryopreservative such as DMSO. The chicken infectious dose 50 (CID50) is established for each challenge batch before performing vaccination/challenge studies. Each group is clinically monitored before and after challenge. Birds are necropsied after at least 7 weeks post-vaccination and the presence Marek's disease gross lesions is checked in each bird. Lesions might include, but not be limited to, the following: liver, heart, spleen, gonads, kidneys, nerve and muscle lesions. Such study may be performed in broiler chickens containing MDV maternal antibodies. The double SB1 construct may also be tested in combination with other Marek's disease vaccine (for instance HVT and or CVI988 Rispens strains) or MD vector vaccines. MD challenge may also be performed by contact between vaccinated birds and MDV infected non-vaccinated SPF chicks.








NDV-F codon optimized gene from modified wt VIId



(SEQ ID NO: 1)



atgggcagcaagcccagcacaagaatcccagcccccctgatgctgatcacccgcatcatgctgatcctgggctgcatcagacc



 


cacaagctccctggatggacgccccctggccgctgccggcatcgtggtgaccggcgacaaggccgtgaacgtgtacaccag


 


cagccagaccggcagcatcatcgtgaagctgctgcccaacatgcccagagacaaagaggcctgcgccaaggcccccctgga


 


agcctacaacagaaccctgaccaccctgctgacccccctgggcgacagcatcagaaagatccagggctccgtgagcacaagc


 


ggcggaggaaagcagggcagactgatcggcgccgtgatcggcagcgtggccctgggagtggctacagctgcccagattacc


 


gctgcagccgccctgatccaggccaaccagaacgccgccaacatcctgagactgaaagagagcattgccgccaccaacgag


 


gccgtgcacgaagtgaccgacggcctgagccagctgtccgtggccgtgggcaagatgcagcagttcgtgaacgaccagttca


 


acaacaccgccagagagctggactgcatcaagatcacccagcaggtgggcgtggagctgaacctgtacctgaccgagctgac


 


cacagtgttcggcccccagatcacaagcccagccctgacacagctgaccatccaggccctgtacaacctggctggcggcaac


 


atggactatctgctgacaaagctgggaatcggcaacaaccagctgtccagcctgatcggaagcggcctgatcaccggctaccc


 


catcctgtacgacagccagacacagctgctgggcatccaggtgaacctgcccagcgtgggcaacctgaacaacatgcgcgcc


 


acctacctggaaaccctgagcgtgtccaccaccaagggctacgccagcgccctggtgcccaaggtggtgacacaggtgggca


 


gcgtgatcgaggaactggacaccagctactgcatcgagagcgacctggacctgtactgcaccagaatcgtgaccttcccaatg


 


agccccggcatctacagctgcctgagcggcaacaccagcgcctgcatgtacagcaagaccgaaggcgcactgacaacaccc


 


tacatggccctgaagggaagcgtgatcgccaactgcaagatcaccacctgcagatgcaccgaccccccaggcatcatcagcc


 


agaactacggcgaggccgtgagcctgatcgatcgccattcctgtaacgtgctgtccctggacggcatcacactgagactgagc


 


ggcgagttcgatgccacctaccagaagaacatcagcatcctggacagccaggtgatcgtgaccggcaacctggacatcagca


 


ccgagctgggcaacgtgaataacagcatcagcaacgccctggacagactggccgagagcaacagcaagctggaaaaagtga


 


acgtgcgcctgacatccacttccgctctgatcacctacatcgtgctgaccgtgatcagcctggtgttcggcgccctgagcctggtg


 


ctggcctgctacctgatgtacaagcagaaggcccagcagaaaaccctgctgtggctgggcaacaacaccctggaccagatga


 


gagccaccaccagagcctgatga


 


NDV-F protein encoded by codon-optimized NDV-F gene of wt VIId


(SEQ ID NO: 2)



mgskpstripaplmlitrimlilgcirptssldgrplaaagivvtgdkavnvytssqtgsiivkllpnmpr



 


dkeacakapleaynrtlttlltplgdsirkiqgsvstsgggkqgrligavigsvalgvataaqitaaaali


 


qanqnaanilrlkesiaatneavhevtdglsqlsvavgkmqqfvndqfnntareldcikitqqvgvelnly


 


ltelttvfgpqitspaltqltigalynlaggnmdylltklgignnqlssligsglitgypilydsqtqllg


 


iqvnlpsvgnlnnmratyletlsvsttkgyasalvpkvvtqvgsvieeldtsyciesdldlyctrivtfpm


 


spgiysclsgntsacmysktegalttpymalkgsvianckittcrctdppgiisqnygeavslidrhscnv


 


lsldgitlrlsgefdatyqknisildsqvivtgnldistelgnvnnsisnaldrlaesnsklekvnvrlts


 


tsalityivltvislvfgalslvlacylmykqkaqqktllwlgnntldqmrattra


 


NDV-F DNA wt VIId


(SEQ ID NO: 3)



Atgggctccaaaccttctaccaggatcccagcacctctgatgctgatcacccggattatgctgatattggg



 


ctgtatccgtccgacaagctctcttgacggcaggcctcttgcagctgcaggaattgtagtaacaggagata


 


aggcagtcaatgtatacacttcgtctcagacagggtcaatcatagtcaagttgctcccgaatatgcccagg


 


gataaggaggcgtgtgcaaaagccccattagaggcatataacagaacactgactactttgctcactcctct


 


tggcgactccatccgcaagatccaagggtctgtgtccacatctggaggaggcaagcaaggccgcctgatag


 


gtgctgttattggcagtgtagctcttggggttgcaacagcggcacagataacagcagctgcggccctaata


 


caagccaaccagaatgccgccaacatcctccggcttaaggagagcattgctgcaaccaatgaagctgtgca


 


tgaagtcaccgacggattatcacaactatcagtggcagttgggaagatgcagcagtttgtcaatgaccagt


 


ttaataatacggcgcgagaattggactgtataaaaatcacacaacaggttggtgtagaactcaacctatac


 


ctaactgaattgactacagtattcgggccacagatcacctcccctgcattaactcagctgaccatccaggc


 


actttataatttagctggtggcaatatggattacttattaactaagttaggtatagggaacaatcaactca


 


gctcgttaattggtagcggcctgatcactggttaccctatactgtatgactcacagactcaactcttgggc


 


atacaagtgaatttaccctcagtcgggaacttaaataatatgcgtgccacctatttggagaccttatctgt


 


aagtacaaccaaaggatatgcctcagcacttgtcccgaaagtagtgacacaagtcggttccgtgatagaag


 


agcttgacacctcatactgtatagagtccgatctggatttatattgtactagaatagtgacattccccatg


 


tccccaggtatttattcctgtttgagcggcaacacatcagcttgcatgtattcaaagactgaaggcgcact


 


cactacgccgtatatggcccttaaaggctcagttattgccaattgtaaaataacaacatgtagatgtacag


 


accctcctggtatcatatcgcaaaattatggagaagctgtatccctgatagatagacattcgtgcaatgtc


 


ttatcattagacgggataactctaaggctcagtggggaatttgatgcaacttatcaaaagaacatctcaat


 


actagattctcaagtcatcgtgacaggcaatcttgatatatcaactgaacttggaaacgtcaacaattcaa


 


tcagcaatgccttggataggttggcagaaagcaacagcaagctagaaaaagtcaatgtcagactaaccagc


 


acatctgctctcattacctatattgttctaactgtcatttctctagttttcggtgcacttagtctggtgtt


 


agcgtgttacctgatgtacaaacagaaggcacaacaaaagaccttgctatggcttgggaataataccctcg


 


atcagatgagagccactacaagagcatga


 


NDV-F gene GenBank Accession No. AY337464.1


(SEQ ID NO: 4)



CTGGATCCCGGTTGGCTCATTCAGGACGCAATATGGGCTCCAAACCTTCTACCAGGATCCCAGCACCTCT



 


GATGCTGATCACCCGGATTATGCTGATATTGGGCTGTATCCGTCCGACAAGCTCTCTTGACGGCAGGCCT


 


CTTGCAGCTGCAGGAATTGTAGTAACAGGAGATAAGGCAGTCAATGTATACACTTCGTCTCAGACAGGGT


 


CAATCATAGTCAAGTTGCTCCCGAATATGCCCAGGGATAAGGAGGCGTGTGCAAAAGCCCCATTAGAGGC


 


ATATAACAGAACACTGACTACTTTGCTCACTCCTCTTGGCGACTCCATCCGCAAGATCCAAGGGTCTGTG


 


TCCACATCTGGAGGAAGGAGACAAAAACGCTTTATAGGTGCTGTTATTGGCAGTGTAGCTCTTGGGGTTG


 


CAACAGCGGCACAGATAACAGCAGCTGCGGCCCTAATACAAGCCAACCAGAATGCCGCCAACATCCTCCG


 


GCTTAAGGAGAGCATTGCTGCAACCAATGAAGCTGTGCATGAAGTCACCGACGGATTATCACAACTATCA


 


GTGGCAGTTGGGAAGATGCAGCAGTTTGTCAATGACCAGTTTAATAATACGGCGCGAGAATTGGACTGTA


 


TAAAAATCACACAACAGGTTGGTGTAGAACTCAACCTATACCTAACTGAATTGACTACAGTATTCGGGCC


 


ACAGATCACCTCCCCTGCATTAACTCAGCTGACCATCCAGGCACTTTATAATTTAGCTGGTGGCAATATG


 


GATTACTTATTAACTAAGTTAGGTATAGGGAACAATCAACTCAGCTCGTTAATTGGTAGCGGCCTGATCA


 


CTGGTTACCCTATACTGTATGACTCACAGACTCAACTCTTGGGCATACAAGTGAATTTACCCTCAGTCGG


 


GAACTTAAATAATATGCGTGCCACCTATTTGGAGACCTTATCTGTAAGTACAACCAAAGGATATGCCTCA


 


GCACTTGTCCCGAAAGTAGTGACACAAGTCGGTTCCGTGATAGAAGAGCTTGACACCTCATACTGTATAG


 


AGTCCGATCTGGATTTATATTGTACTAGAATAGTGACATTCCCCATGTCCCCAGGTATTTATTCCTGTTT


 


GAGCGGCAACACATCAGCTTGCATGTATTCAAAGACTGAAGGCGCACTCACTACGCCGTATATGGCCCTT


 


AAAGGCTCAGTTATTGCCAATTGTAGGATAACAACATGTAGATGTACAGACCCTCCTGGTATCATATCGC


 


AAAATTATGGAGAAGCTGTATCCCTGATAGATAGACATTCGTGCAATGTCTTATCATTAGACGGGATAAC


 


TCTAAGGCTCAGTGGGGAATTTGATGCAACTTATCAAAAGAACATCTCAATACTAGATTCTCAAGTCATC


 


GTGACAGGCAATCTTGATATATCAACTGAACTTGGAAACGTCAACAATTCAATCAGCAATGCCTTGGATA


 


GGTTGGCAGAAAGCAACAGCAAGCTAGAAAAAGTCAATGTCAGACTAACCAGCACATCTGCTCTCATTAC


 


CTATATTGTTCTAACTGTCATTTCTCTAGTTTTCGGTGCACTTAGTCTGGGTTTAGCGTGTTACCTGATG


 


TACAAACAGAAGGCACAACAAAAGACCTTGCTATGGCTTGGGAATAATACCCTCGATCAGATGAGAGCCA


 


CTACAAGAGCATGAA


 


NDV-F protein GenBank Accession No. AAP97877.1


(SEQ ID NO: 5)



MGSKPSTRIPAPLMLITRIMLILGCIRPTSSLDGRPLAAAGIVVTGDKAVNVYTSSQTGSIIVKLLPNMP



 


RDKEACAKAPLEAYNRTLTTLLTPLGDSIRKIQGSVSTSGGRRQKRFIGAVIGSVALGVATAAQITAAAA


 


LIQANQNAANILRLKESIAATNEAVHEVTDGLSQLSVAVGKMQQFVNDQFNNTARELDCIKITQQVGVEL


 


NLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGIGNNQLSSLIGSGLITGYPILYDSQT


 


QLLGIQVNLPSVGNLNNMRATYLETLSVSTTKGYASALVPKVVTQVGSVIEELDTSYCIESDLDLYCTRI


 


VTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMALKGSVIANCRITTCRCTDPPGIISQNYGEAVSLID


 


RHSCNVLSLDGITLRLSGEFDATYQKNISILDSQVIVTGNLDISTELGNVNNSISNALDRLAESNSKLEK


 


VNVRLTSTSALITYIVLTVISLVFGALSLGLACYLMYKQKAQQKTLLWLGNNTLDQMRATTRA


 


NDV-F gene of CA02 strain GenBank Accesion No. EF520718.1


(SEQ ID NO: 6)



ATGGGCTCCAAACCTTCTACCTGGATCTCAGTAACTCTGATGCTGATCACTCGGACCATGCTTATACTTA



 


GCTGTATCTGTCCGACAAGCTCTCTTGACGGTAGACCTCTCGCAGCCGCAGGGATTGTGGTGACGGGAGA


 


TAAAGCAGTCAATATATACACTTCATCTCAAACAGGGTCAATCATCATCAAGTTACTCCCAAATATGCCC


 


AAGGATAAAGAAGCGTGCGCAAAAGCCCCATTGGAAGCATACAATAGAACACTGACCACTTTACTCACCC


 


CTCTTGGTGACTCTATCCGCAGAATACAAGGGTCTGCGACTACATCTGGAGGAAGGAGACAGAAACGCTT


 


TGTAGGTGCCATTATCGGCAGTGTAGCTCTTGGGGTTGCAACAGCTGCACAGATAACAGCAGCCGCAGCT


 


CTGATACAAGCCAACCAAAATGCTGCCAACATCCTCCGGCTTAAGGAGAGCATTGCTGCAACCAATGACG


 


CTGTACACGAGGTCACTAACGGATTATCACAACTAGCGGTGGCGGTCGGGAAGATGCAGCAGTTTGTTAA


 


TAACCAGTTTAATAATACGGCGCGAGAATTGGACTGCATAAAAATTGCACAACAAGTGGGCGTCGAACTC


 


AATTTGTATCTAACTGAATTGACCACAGTGTTCGGGCCACAAATCACCTCCCCTGCTTTAACTCAGCTGA


 


CTATCCAGGCACTTTATAATTTAGCCGGTGGCAATATGGATTACCTGTTGACTAAGTTGGGTGTAGGGAA


 


TAATCAACTCAGTTCGTTAATTGGTAGTGGCTTGATAACTGGCAACCCTATACTATATGACTCACAGACC


 


CAACTCTTAGGCATACAGATAAATTTACCCTCAGTCGGGAGCCTAAATAATATGCGTGCCACCTACTTGG


 


AGACCTTATCCGTAAGCACGACCAAAGGGTTCGCCTCAGCACTTGTCCCGAAAGTTGTGACGCAAGTCGG


 


CTCTGTGATAGAAGAACTTGACACCTCATATTGTATAGAATCCGATATAGATCTATATTGTACAAGGGTA


 


GTGACATTCCCCATGTCTCCTGGTATTTACTCCTGTCTGAGCGGCAATACGTCAGCTTGTATGTATTCAA


 


AGACCGAAGGTGCACTCACTACACCATACATGGCCCTCAAAGGCTCAGTTATTGCCAATTGCAAGATGAC


 


TACATGCAGATGCGCAGATCCCCCAGGTATCATATCACAGAATTATGGGGAAGCTGTGTCTCTAATAGAT


 


AAACATTCATGCAGTGTCTTGTCCCTAGACGGGATAACTCTGAGGCTCAGTGGGGAATTTGATGCGACCT


 


ATCAAAAGAACATCTCAATACTAGATTCTCAAGTCATCGTGACAGGAAATCTCGATATATCAACTGAGCT


 


TGGGAATGTTAACAACTCGATAAGCAGTACCCTGGACAAATTAGCAGAAAGCAACAACAAGCTAAACAAG


 


GTCAATGTAAACCTAACCAGCACATCTGCTCTCATCACTTATATTGTCTTAGCTATCGTATCTCTTGCTT


 


TCGGCGTAATTAGCCTGGTTCTAGCATGCTACCTGATGTATAAACAAAGAGCACAACAAAAGACCTTACT


 


ATGGCTGGGGAACAACACCCTTGATCAGATGAGAGCCACCACAAGAACCTGA


 


NDV-F wildtype protein sequence of CA02 strain, GenBank Acession No. ABS84266.1


(SEQ ID NO: 7)



MGSKPSTWISVTLMLITRTMLILSCICPTSSLDGRPLAAAGIVVTGDKAVNIYTSSQTGSIIIKLLPNMP



 


KDKEACAKAPLEAYNRTLTTLLTPLGDSIRRIQGSATTSGGRRQKRFVGAIIGSVALGVATAAQITAAAA


 


LIQANQNAANILRLKESIAATNDAVHEVTNGLSQLAVAVGKMQQFVNNQFNNTARELDCIKIAQQVGVEL


 


NLYLTELTTVFGPQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQT


 


QLLGIQINLPSVGSLNNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIESDIDLYCTRV


 


VTFPMSPGIYSCLSGNTSACMYSKTEGALTTPYMALKGSVIANCKMTTCRCADPPGIISQNYGEAVSLID


 


KHSCSVLSLDGITLRLSGEFDATYQKNISILDSQVIVTGNLDISTELGNVNNSISSTLDKLAESNNKLNK


 


VNVNLTSTSALITYIVLAIVSLAFGVISLVLACYLMYKQRAQQKTLLWLGNNTLDQMRATTRT


 


NDV-F codon-optimized gene of modified CA02 strain


(SEQ ID NO: 8)



Atgggcagcaagcccagcacctggatcagcgtgaccctgatgctgatcaccagaaccat



 


gctgatcctgagctgcatctgccccacaagcagcctggacggcagacccctggccgctg


 


ccggcatcgtggtgaccggcgacaaggccgtgaacatctacaccagcagccagaccggc


 


agcatcatcatcaagctgctgcccaacatgcccaaggacaaagaggcctgcgccaaggc


 


ccccctggaagcctacaacagaaccctgaccaccctgctgacccccctgggcgacagca


 


tcagaagaatccagggcagcgccaccacaagcggcggaggaaagcagggcagactggtg


 


ggcgctatcatcgggagcgtggccctgggcgtggccacagctgcccagattaccgctgc


 


agccgccctgattcaggccaatcagaacgccgccaacatcctgagactgaaagagagca


 


ttgccgccaccaacgacgccgtgcacgaagtgacaaacggactgtcccagctggctgtc


 


gctgtcggcaagatgcagcagttcgtgaacaaccagttcaacaacaccgccagagagct


 


ggactgcatcaagatcgcccagcaggtgggcgtggagctgaacctgtacctgaccgagc


 


tgaccacagtgttcggcccccagatcacaagccccgctctgacccagctgacaatccag


 


gccctgtacaacctggctggcggcaacatggactatctgctgactaagctgggagtggg


 


caacaaccagctgtccagcctgatcgggtccgggctgatcacaggcaaccccatcctgt


 


acgacagccagacacagctgctgggcatccagatcaacctgccatccgtgggaagcctg


 


aacaacatgagagccacctacctggaaaccctgagcgtgtccaccaccaagggcttcgc


 


cagcgccctggtgcccaaggtggtgacacaggtgggcagcgtgatcgaggaactggaca


 


ccagctactgcatcgagagcgacatcgacctgtactgcaccagagtggtgaccttccca


 


atgagccccggcatctacagctgcctgagcggcaacaccagcgcctgcatgtacagcaa


 


gaccgaaggagcactgacaacaccctacatggccctgaagggaagcgtgatcgccaact


 


gcaagatgaccacctgcagatgcgccgaccccccaggcatcatcagccagaactacggc


 


gaggccgtgagcctgatcgacaaacattcctgtagcgtgctgtccctggatggcatcac


 


actgagactgagcggcgagttcgacgccacctaccagaagaacatcagcatcctggaca


 


gccaggtgatcgtgaccggcaacctggacatcagcaccgagctgggcaacgtgaacaac


 


agcatcagcagcaccctggacaagctggccgagtccaacaacaagctgaacaaagtgaa


 


cgtgaacctgaccagcacaagcgccctgatcacctacatcgtgctggccatcgtgtccc


 


tggccttcggcgtgatcagcctggtgctggcctgctacctgatgtacaagcagagagcc


 


cagcagaaaaccctgctgtggctgggcaataacaccctggaccagatgagggccaccac


 


cagaacctgatga


 


Amino Acid Sequence of the codon optimized genotype V NDV-F gene in vSB1-008


(SEQ ID NO: 9)



mgskpstwisvtlmlitrtmlilscicptssldgrplaaagivvtgdkavniytssqtgsiiikllpnmpkdkeacakapleayn



 


rtlttlltplgdsirriqgsattsgggkqgrlvgaiigsvalgvataaqitaaaaliqanqnaanilrlkesiaatndavhevtnglsq


 


lavavgkmqqfvnnqfnntareldcikiaqqvgvelnlyltelttvfgpqitspaltqltiqalynlaggnmdylltklgvgnn


 


qlssligsglitgnpilydsqtqllgiqinlpsvgslnnmratyletlsysttkgfasalvpkvvtqvgsvieeldtsyciesdidly


 


ctrvvtfpmspgiysclsgntsacmysktegalttpymalkgsvianckmttcrcadppgiisqnygeayslidkhscsvlsl


 


dgitlrlsgefdatyqknisildsqvivtgnldistelgnvnnsisstldklaesnnklnkvnvnltstsalityivlaivslafgvisl


 


vlacylmykqraqqktllwlgnntldqmrattrt*


 


mCMV IE promoter


(SEQ ID NO: 10)



aattcaatagtggatcccccaactccgcccgttttatgactagaaccaatagtttttaa



 


tgccaaatgcactgaaatcccctaatttgcaaagccaaacgccccctatgtgagtaata


 


cggggactttttacccaatttcccacgcggaaagccccctaatacactcatatggcata


 


tgaatcagcacggtcatgcactctaatggcggcccatagggactttccacatagggggc


 


gttcaccatttcccagcataggggtggtgactcaatggcctttacccaagtacattggg


 


tcaatgggaggtaagccaatgggtttttcccattactggcaagcacactgagtcaaatg


 


ggactttccactgggttttgcccaagtacattgggtcaatgggaggtgagccaatggga


 


aaaacccattgctgccaagtacactgactcaatagggactttccaatgggtttttccat


 


tgttggcaagcatataaggtcaatgtgggtgagtcaatagggactttccattgtattct


 


gcccagtacataaggtcaatagggggtgaatcaacaggaaagtcccattggagccaagt


 


acactgcgtcaatagggactttccattgggttttgcccagtacataaggtcaatagggg


 


atgagtcaatgggaaaaacccattggagccaagtacactgactcaatagggactttcca


 


ttgggttttgcccagtacataaggtcaatagggggtgagtcaacaggaaagttccattg


 


gagccaagtacattgagtcaatagggactttccaatgggttttgcccagtacataaggt


 


caatgggaggtaagccaatgggtttttcccattactggcacgtatactgagtcattagg


 


gactttccaatgggttttgcccagtacataaggtcaataggggtgaatcaacaggaaag


 


tcccattggagccaagtacactgagtcaatagggactttccattgggttttgcccagta


 


caaaaggtcaatagggggtgagtcaatgggtttttcccattattggcacgtacataagg


 


tcaataggggtgagtcattgggtttttccagccaatttaattaaaacgccatgtacttt


 


cccaccattgacgtcaatgggctattgaaactaatgcaacgtgacctttaaacggtact


 


ttcccatagctgattaatgggaaagtaccgttctcgagccaatacacgtcaatgggaag


 


tgaaagggcagccaaaacgtaacaccgccccggttttcccctggaaattccatattggc


 


acgcattctattggctgagctgcgttctacgtgggtataagaggcgcgaccagcgtcgg


 


taccgtcgcagtcttcggtctgaccaccgtagaacgcagagctcctcgctgcag


 


SV40 PolyA


(SEQ ID NO: 11)



ggggatccagacatgataagatacattgatgagtttggacaaaccacaactagaatgca



 


gtgaaaaaaatgctttatttgtgaaatttgtgatgctattgctttatttgtaaccatta


 


taagctgcaataaacaagttaacaacaacaattgcattgattttatgtttcaggttcag


 


ggggaggtgtgggaggttttttcggatcctctagagtcga


 


SV40 promoter


(SEQ ID NO: 12)



caattcgagctcggtacagcttggctgtggaatgtgtgtcagttagggtgtggaaagtccccaggctccccagcaggcagaagt



 


atgcaaagcatgcatctcaattagtcagcaaccaggtgtggaaagtccccaggctccccagcaggcagaagtatgcaaagcat


 


gcatctcaattagtcagcaaccatagtcccgcccctaactccgcccatcccgcccctaactccgcccagttccgcccattctccgc


 


cccatggctgactaattttttttatttatgcagaggccgaggccgcctcggcctctgagctattccagaagtagtgaggaggctttttt


 


ggaggcctaggcttttgcaaaaagct


 


Synthetic PolyA


(SEQ ID NO: 13)



aataaaatatctttattttcattacatctgtgtgttggttttttgtgtgaatcgatagtactaacatacgctctccatcaaaacaaaacgaa



 


acaaaacaaactagcaaaataggctgtccccagtgcaagtgcaggtgccagaacatttctct


 


Gene coding for glycoprotein C of SB-1 strain from genome HQ840738 (98595 . . . 100031)


(SEQ ID NO: 34)



    atgcac gcgtcacgcg cgttgcgagc tttggggtgg acgagactct



 


tatttgtcgt tttattttcg ggccgcgtcc taagcgctag cattaacccc


 


gatctagcta cacccccggt cattgctttc aacccgtcaa gtattccggc


 


cgatgatggg cctttggcca aagttcctgc atccccgccg gcaggggaga


 


aagaggagag ccacaagaat gcaagcgacg cgcgtaggat gcctagtata


 


gtttgcgata aagaagaagt tttcgttttc ctgaacaaga ccgggcgttt


 


cgtgtgcact cttaagatcg cccctccctc cgacaacgaa tggtcgaact


 


ttgctctgga ccttattttc aatccgatcg aataccatgc taatgagaag


 


aacgtggaag cagcgcgtat tgctggcctc tatggggtgc ccggatcaga


 


ttacgcctac ccgcgtcctt ctgaattaat ctcttctatt cggcgagacc


 


cccaagggac cttttggaca agcccatcgg cacatggaga caagtacttc


 


atatggctaa acaaaacgac gaatacgatg ggcgtggaaa ttaggaacgt


 


cgactacgca gacaacggtt acatccaagt tgccatgcgg gatcctttca


 


atcggccttt actagataag cacgtgtaca tccgcgtgtg tcaacgaccc


 


gcctcggtcg acgttctagc cccccccgtc ctcagtggcg ataagtacaa


 


ggcttcatgc atcgttaggc atttttatcc accgggctcc gtctatgtgt


 


tctggaggca agatgggaat atcgttacac cacgtaagga cacggacgga


 


agtttttggt ggtttgaatc agcccgggga gccaccctgg tatctacgat


 


aacgctgggc aactcggcca tcgaccctcc tcccaagatt tcatgtctgg


 


tagcctggaa gcagggaaat atgatgagta ctacgaacgc cactgcaatc


 


ccgaccgtat atcatcatcc ccggatatcc ctggctttca aagatgggta


 


tgcaatatgt actacgcaat gtgtgccgtt cggaattacc atacgatggt


 


tagtacacga tgaacccaaa cctaatacaa cttatgatac tgtggttaca


 


ggtctttgca ggaccctcaa gcggcataga aatatcatca gccgaatatt


 


actccaagat gactggcaga aaacaaagta tacatgtcgt ctcatcggct


 


atcctttcga cgaagacaaa tttcaagctt tcgattactt cgacgcgacg


 


ccatcgacga gggggtcccc catggttctc gcgatagcgg ctgttgtggg


 


actagctttg attttgggaa tgggtacact cctgacggct ctgtgtttct


 


acgcctccgg gaaaaaatac atattacttt cgtccgtcta g


 


Glycoprotein C of SB-1 [Gallid herpesvirus 3] with GenBank Accession NO. AEI00252.1


(SEQ ID NO: 35)



MHASRALRALGWTRLLFVVLFSGRVLSASINPDLATPPVIAFNPSSIPADDGPLAKVPASPPAGEKEESH



 


KNASDARRMPSIVCDKEEVFVFLNKTGRFVCTLKIAPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIA


 


GLYGVPGSDYAYPRPSELISSIRRDPQGTFWTSPSAHGDKYFIWLNKTTNTMGVEIRNVDYADNGYIQVA


 


MRDPFNRPLLDKHVYIRVCQRPASVDVLAPPVLSGDKYKASCIVRHFYPPGSVYVFWRQDGNIVTPRKDT


 


DGSFWWFESARGATLVSTITLGNSAIDPPPKISCLVAWKQGNMMSTTNATAIPTVYHHPRISLAFKDGYA


 


ICTTQCVPFGITIRWLVHDEPKPNTTYDTVVTGLCRTLKRHRNIISRILLQDDWQKTKYTCRLIGYPFDE


 


DKFQAFDYFDATPSTRGSPMVLAIAAVVGLALILGMGTLLTALCFYASGKKYILLSSV


 


Partial plasmid pSB1 44cds SV FCAopt sequence for vSB1-009 (6791 bp)


Green and Italic = UL44 Recombination Arms


BLUE AND UPPERCASE = SV40 PROMOTER


Black and Bold = NDV-F-CAO2-CSmut sequence


(SEQ ID NO: 37)



Cttttgtcatgctcggagctctgatcgcatcttatcattacgtctgcatagcaacgtct



 


ggagacgtgacgtggaagaccgggtttttagttgtggcggcagggacgattgccggcat


 


cacggctccgtatggagacatttctcctctagccggctttctttcggcgtatacggcgt


 


tagctattcacgtggtcagagacgccagtcggtctctaatgaacacgtgctactaccgt


 


gcacgtcgggaaattactgtgaacggtgcatatcgcctcggtcgcgcgcgtctcccgcc


 


cagcacggacgccgaggcgacgcgcgaagaagacgtatccagttacgatacgctggggg


 


ggaatattcctacgataattctgagcctcatagcggtcatctcgattccagccatagcc


 


agctttcaaaagtacatgtcgaacgcaactaagcaccagtcaacattgactgacacgtt


 


acgcagtatatgcggtttcttggtgggtacaagtgtcgcgatattccttccgtcgcgct


 


accacgaggttctgttccgtccaattcttgtattactgttaatattcggggcaatggct


 


actaccttagccggcttcggtttacttctcgggccgacattgttttccgcgacagccgc


 


ggttctgtgctgctacacttgtataaatgtacgcaacgcgaatagcggaataaagcaat


 


tggcggccgccgcagctggtaaatgcatattaggaactgccatctcgagcatgttggtt


 


tgcgtgttaatacaatattcctgatcgcggagcgattaatttttatatcatgtgctcat


 


agcgttctttcgaactgcgaataaaactttcgtggctactaaaggggcctatcgtgggt


 


ttatgcgctgtcgaaaacatgaaagggccgatttaaagctaagttgcgcaggcagaggc


 


cactccatatacgctctcggagacgcggctcgcacgccagctgaaatattttcccccct


 


gcaggtcgaccCAATTCGAGCTCGGTACAGCTTGGCTGTGGAATGTGTGTCAGTTAGGG


 


TGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTA


 


GTCAGCAACCAGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGAAGTATGCAAAGCA


 


TGCATCTCAATTAGTCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCCCCTA


 


ACTCCGCCCAGTTCCGCCCATTCTCCGCCCCATGGCTGACTAATTTTTTTTATTTATGC


 


AGAGGCCGAGGCCGCCTCGGCCTCTGAGCTATTCCAGAAGTAGTGAGGAGGCTTTTTTG


 


GAGGCCTAGGCTTTTGCAAAAAGCTcccggggcggccgccaccatgggcagcaagccca


 


gcacctggatcagcgtgaccctgatgctgatcaccagaaccatgctgatcctgagctgc


 


atctgccccacaagcagcctggacggcagacccctggccgctgccggcatcgtggtgac


 


cggcgacaaggccgtgaacatctacaccagcagccagaccggcagcatcatcatcaagc


 


tgctgcccaacatgcccaaggacaaagaggcctgcgccaaggcccccctggaagcctac


 


aacagaaccctgaccaccctgctgacccccctgggcgacagcatcagaagaatccaggg


 


cagcgccaccacaagcggcggaggaaagcagggcagactggtgggcgctatcatcggga


 


gcgtggccctgggcgtggccacagctgcccagattaccgctgcagccgccctgattcag


 


gccaatcagaacgccgccaacatcctgagactgaaagagagcattgccgccaccaacga


 


cgccgtgcacgaagtgacaaacggactgtcccagctggctgtcgctgtcggcaagatgc


 


agcagttcgtgaacaaccagttcaacaacaccgccagagagctggactgcatcaagatc


 


gcccagcaggtgggcgtggagctgaacctgtacctgaccgagctgaccacagtgttcgg


 


cccccagatcacaagccccgctctgacccagctgacaatccaggccctgtacaacctgg


 


ctggcggcaacatggactatctgctgactaagctgggagtgggcaacaaccagctgtcc


 


agcctgatcgggtccgggctgatcacaggcaaccccatcctgtacgacagccagacaca


 


gctgctgggcatccagatcaacctgccatccgtgggaagcctgaacaacatgagagcca


 


cctacctggaaaccctgagcgtgtccaccaccaagggcttcgccagcgccctggtgccc


 


aaggtggtgacacaggtgggcagcgtgatcgaggaactggacaccagctactgcatcga


 


gagcgacatcgacctgtactgcaccagagtggtgaccttcccaatgagccccggcatct


 


acagctgcctgagcggcaacaccagcgcctgcatgtacagcaagaccgaaggagcactg


 


acaacaccctacatggccctgaagggaagcgtgatcgccaactgcaagatgaccacctg


 


cagatgcgccgaccccccaggcatcatcagccagaactacggcgaggccgtgagcctga


 


tcgacaaacattcctgtagcgtgctgtccctggatggcatcacactgagactgagcggc


 


gagttcgacgccacctaccagaagaacatcagcatcctggacagccaggtgatcgtgac


 


cggcaacctggacatcagcaccgagctgggcaacgtgaacaacagcatcagcagcaccc


 


tggacaagctggccgagtccaacaacaagctgaacaaagtgaacgtgaacctgaccagc


 


acaagcgccctgatcacctacatcgtgctggccatcgtgtccctggccttcggcgtgat


 


cagcctggtgctggcctgctacctgatgtacaagcagagagcccagcagaaaaccctgc


 


tgtggctgggcaataacaccctggaccagatgagggccaccaccagaacctgatgagcg


 


gccgcgatacctgcaggtttgcggtgacattgatctggctcattatatgccccgagctc


 


ttgtaacatcgcggacgcgatttccgtagtaggcacatctcaaatgcaaaagcggcatg


 


tcaaccgtataggtacatccggccctgcttacagtcggtagggcatatatccaccggaa


 


aacttcagctttagactcctcaggtgatgaggaatagtatgtaaccctctagcagtacg


 


gtatttctaaaaaaaggtagatccttttccacacggcacagactaaataacgtacacta


 


cacaggttctctcgaacttcgtttggaccggaattattccctcggcagcgcctaaaaag


 


caaacctctagagtagataagtgtcagtgaacctaggccttctttgttccacggctgga


 


aagctaagggacgaggtacacgcgaccccagccacgcacgaacagagtttaacggaagc


 


gtcgtttgcgggataaggttgtcggaccccgcgggtccgttgaaaagtggctgcgcgcc


 


taccgacgaatacgtcggtaacaattttagaaatcgaatatgactgcgagtaccgtaca


 


atcgcgaaatacggtctctatatagctactcggtccttaaatatgtaagtatgatgtcc


 


cctactcccgaagacgaccgcgacttggtcgcagtacgtgggctgctccggatgatgga


 


cgagaccacatctgagcgacacaaacgttcgcgttcaggatgcccccggttgttatgcg


 


gttgtacgatcgggatcgctcttactgtgttcgtcatcacagctacggtcgtgctagct


 


tcgctgtttgcattctcttacatgtccctggagtccggtacatgtcctcacgaatggat


 


cggtttaggctatagttgtatgcgcgcgatggggagcaacgctaccgagctagaagccc


 


tagatacgtgctcccgacataacagcaagcttgtcgactttactcatgcgaaaattcta


 


atcgaagctatcgc


 


Partial plasmid pHM103 + Fopt DNA sequence for vHVT114


Green and Italic = Arms


Black and bold = NDV Fopt


BLUE AND UPPERCASE = SV40 PROMOTER


Red and Italic and underlined = SV40 polyA


(SEQ ID NO: 38)



gagctcagggtatgatactcagctgttattgtggccgaccaggaggactccaatgctta



 


gcattcataagaacgctagagatgctatttaacgatgtgctgtcgtctaaagaatttgt


 


gcatttagcctttaaatgtaaaaccaatgacgcattcactacgctcgtgcgtgcaattt


 


ctgggccagggtatgcatattccataacagaaatcgacacttgagaagaggatctgact


 


gtttgggataaaggtcgtttgggtctgtcctagcgatataatttatatgacgatataca


 


ttaaacatctgtgtgcagtacttaggtatttaatcatgtcgatgaaatgttatgtgtaa


 


atatcggacaatatagataacgggcacgctgctattgtaacgtgcgcccgcgcgctagt


 


gctgactaatagtgtggatgatgtatacagtatattacaaacggaaatgatacgtaata


 


aattatgtactcttattgatttataaaaacatacatgcagtgttgctatgtcacataat


 


tagcctcgcccgtctacgctccactgaagataatgggctcccgctgttcaaaaaaatca


 


gcgtgcgtcgataagactttggtgcagtctcttcggggtcgcaatttagatttgccgca


 


tggagggtatctggggatttttgccaatgctggagcgacgactgtacgattcgtcccat


 


cgggatctagcagaccaatgatgttgacacacatcggccatgcatgtacggacggtcta


 


ttgcgcgagtttgttattttcgaaggacaagatggaagtgtatatggaaccgacaataa


 


tgttagtttgcatttcttagggcggaatctacatgatatcttatccaagcggggtatga


 


gccagagagatgtgatggtcataaagggtaaattttttagatctgaaataacgcagttg


 


cccaaacaacgatcgcgattaaaagaaaaatcggatggttcaattaggacatgcatgga


 


ttctgtgcgcataaaccataaccgcagcactgttgggcacttcggtaactcaaatgcga


 


agcgttgcacgtctgcgataactacgcctactatgcacattgttactcctgcatcttaa


 


aaatatatcctgtagtaattttcacagcaatgtcataacatcatctcgctaaagaatga


 


cctgggattggagaagtaatgaatatttgcaaccaatgcattgaataaactaacattaa


 


acGAATTCGAGCTCGGTACAGCTTGGCTGTGGAATGTGTGTCAGTTAGGGTGTGGAAAG


 


TCCCCAGGCTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCAATTAGTCAGCAAC


 


CAGGTGTGGAAAGTCCCCAGGCTCCCCAGCAGGCAGAAGTATGCAAAGCATGCATCTCA


 


ATTTAGTCAGCAACCATAGTCCCGCCCCTAACTCCGCCCATCCCGCCCTAACTCCGCCC


 


AGTTCCGCCCATTCTCCGCCCCATGGCTGACTAATTTTTTTTATTTATGCAGAGGCCGA


 


GGCCGCCTCGGCCTCTGAGCTATTCCAGAAGTAGTGAGGAGGCTTTTTTGGAGGCCTAG


 


GCTTTTGCAAAAAGCTgcggccgccaccatgggcagcaagcccagcacaagaatcccag


 


cccccctgatgctgatcacccgcatcatgctgatcctgggctgcatcagacccacaagc


 


tccctggatggacgccccctggccgctgccggcatcgtggtgaccggcgacaaggccgt


 


gaacgtgtacaccagcagccagaccggcagcatcatcgtgaagctgctgcccaacatgc


 


ccagagacaaagaggcctgcgccaaggcccccctggaagcctacaacagaaccctgacc


 


accctgctgacccccctgggcgacagcatcagaaagatccagggctccgtgagcacaag


 


cggcggaggaaagcagggcagactgatcggcgccgtgatcggcagcgtggccctgggag


 


tggctacagctgcccagattaccgctgcagccgccctgatccaggccaaccagaacgcc


 


gccaacatcctgagactgaaagagagcattgccgccaccaacgaggccgtgcacgaagt


 


gaccgacggcctgagccagctgtccgtggccgtgggcaagatgcagcagttcgtgaacg


 


accagttcaacaacaccgccagagagctggactgcatcaagatcacccagcaggtgggc


 


gtggagctgaacctgtacctgaccgagctgaccacagtgttcggcccccagatcacaag


 


cccagccctgacacagctgaccatccaggccctgtacaacctggctggcggcaacatgg


 


actatctgctgacaaagctgggaatcggcaacaaccagctgtccagcctgatcggaagc


 


ggcctgatcaccggctaccccatcctgtacgacagccagacacagctgctgggcatcca


 


ggtgaacctgcccagcgtgggcaacctgaacaacatgcgcgccacctacctggaaaccc


 


tgagcgtgtccaccaccaagggctacgccagcgccctggtgcccaaggtggtgacacag


 


gtgggcagcgtgatcgaggaactggacaccagctactgcatcgagagcgacctggacct


 


gtactgcaccagaatcgtgaccttcccaatgagccccggcatctacagctgcctgagcg


 


gcaacaccagcgcctgcatgtacagcaagaccgaaggcgcactgacaacaccctacatg


 


gccctgaagggaagcgtgatcgccaactgcaagatcaccacctgcagatgcaccgaccc


 


cccaggcatcatcagccagaactacggcgaggccgtgagcctgatcgatcgccattcct


 


gtaacgtgctgtccctggacggcatcacactgagactgagcggcgagttcgatgccacc


 


taccagaagaacatcagcatcctggacagccaggtgatcgtgaccggcaacctggacat


 


cagcaccgagctgggcaacgtgaataacagcatcagcaacgccctggacagactggccg


 


agagcaacagcaagctggaaaaagtgaacgtgcgcctgacatccacttccgctctgatc


 


acctacatcgtgctgaccgtgatcagcctggtgttcggcgccctgagcctggtgctggc


 


ctgctacctgatgtacaagcagaaggcccagcagaaaaccctgctgtggctgggcaaca


 


acaccctggaccagatgagagccaccaccagagcctgatgagcggccgcggggatccag


 


acatgataagatacattgatgagtttggacaaaccacaactagaatgcagtgaaaaaaa


 


tgctttatttgtgaaatttgtgatgctattgctttatttgtaaccattataagctgcaa


 


taaacaagttaacaacaacaattgcattgattttatgtttcaggttcagggggaggtgt


 


gggaggttttttcggatcctctagagtcgacaattattttatttaataacatatagccc


 


aaagacctctatgaacatttagtttcccgtatactcaacggcgcgtgtacacacgcatc


 


tctttgcatagcgatgaagtttgttcggcagcagaaaatgcagatatccaacaatctgg


 


agaaaacttatcatcacagtggcagtggaaacataccccctctatattcatggtataat


 


tatcgtctacagcgtccaggatagtggcgtgagaaaatggagatctgcagccctccttt


 


ccatggcatgccgctttattgttcattaaacgcacaatggtctcaacgccagatatggg


 


catagattctgaagaacccgttgacaatccgaagaagaaggcgtgcaggtctttggaag


 


actcgcacgttggtcttataatgtatgatcgagatgtcaccctaatgccacatggtaca


 


ggcttatcgcggtcatggcgatcggacttgtaatttgcaacgatgggcaaaggatcgac


 


gacatgccaaacattctgaacccgtagagatgttaacgatgacgaggatgaatatccca


 


tgctcgctgccatagtatcaagtacaccgcgaataaggacgcgtccaacatcgttatat


 


gcacacaatgggctacacgtgactaacacccccgaatattagtcatatgtgagtttcag


 


tctggctcccatatagcctgtagactatttgtggtttaagtgtgaacgaggcgctgtga


 


acgagactcgggccgattgtaagaacaagcaaatgcactttccatttaacaagaagtgt


 


agagagaatactcaacctctttggatgtatcctcgag


 


DNA coding for IBDV VP2 protein


(SEQ ID NO: 39)



ATGACAAACCTGCAAGATCAAACCCAACAGATTGTTCCGTTCATACGGAGCCTTCTGAT



 


GCCAACAACCGGACCGGCGTCCATTCCGGACGACACCCTGGAGAAGCACACTCTCAGGT


 


CAGAGACCTCGACCTACAATTTGACTGTGGGGGACACAGGGTCAGGGCTAATTGTCTTT


 


TTCCCTGGATTCCCTGGCTCAATTGTGGGTGCTCACTACACACTGCAGAGCAATGGGAA


 


CTACAAGTTCGATCAGATGCTCCTGACTGCCCAGAACCTACCGGCCAGCTACAACTACT


 


GCAGACTAGTGAGTCGGAGTCTCACAGTGAGGTCAAGCACACTCCCTGGTGGCGTTTAT


 


GCACTAAACGGCACCATAAACGCCGTGACCTTCCAAGGAAGCCTGAGTGAACTGACAGA


 


TGTTAGCTACAATGGGTTGATGTCTGCAACAGCCAACATCAACGACAAAATTGGGAATG


 


TCCTGGTAGGGGAAGGGGTCACTGTCCTCAGCCTACCCACATCATATGATCTTGGGTAT


 


GTGAGGCTTGGTGACCCCATTCCCGCTATAGGGCTTGACCCAAAAATGGTAGCTACATG


 


CGACAGCAGTGACAGGCCCAGAGTCTACACCATAACTGCAGCCGATGATTACCAATTCT


 


CATCACAGTACCAACCAGGTGGGGTAACAATCACACTGTTCTCAGCCAACATTGATGCT


 


ATCACAAGCCTCAGCATTGGGGGAGAGCTCGTGTTTCAAACAAGCGTCCAAGGCCTTGT


 


ACTGGGCGCCACCATCTACCTTATAGGCTTTGATGGGACTGCGGTAATCACCAGAGCTG


 


TAGCCGCAGATAATGGGCTGACGGCCGGCACCGACAATCTTATGCCATTCAATCTTGTC


 


ATTCCAACCAATGAGATAACCCAGCCAATCACATCCATCAAACTGGAGATAGTGACCTC


 


CAAAAGTGGTGGTCAGGCAGGGGATCAGATGTCATGGTCGGCAAGTGGGAGCCTAGCAG


 


TGACGATCCATGGTGGCAACTATCCAGGGGCCCTCCGTCCCGTCACACTAGTAGCCTAC


 


GAAAGAGTGGCAACAGGATCCGTCGTTACGGTCGCTGGGGTGAGTAACTTCGAGCTGAT


 


TCCAAATCCTGAACTAGCAAAGAACCTGGTTACAGAATACGGCCGATTTGACCCAGGAG


 


CCATGAACTACACAAAATTGATACTGAGTGAGAGGGACCGTCTTGGCATCAAGACCGTC


 


TGGCCAACAAGGGAGTACACTGATTTTCGTGAGTACTTCATGGAGGTGGCCGACCTCAA


 


CTCTCCCCTGAAGATTGCAGGAGCATTTGGCTTCAAAGACATAATCCGGGCTATAAGGA


 


GGTAA


 


IBDV VP2 protein


(SEQ ID NO: 40)



MTNLQDQTQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVF



 


FPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQNLPASYNYCRLVSRSLTVRSSTLPGGVY


 


ALNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLGY


 


VRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQPGGVTITLFSANIDA


 


ITSLSIGGELVFQTSVQGLVLGATIYLIGFDGTAVITRAVAADNGLTAGTDNLMPFNLV


 


IPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSASGSLAVTIHGGNYPGALRPVTLVAY


 


ERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERDRLGIKTV


 


WPTREYTDFREYFMEVADLNSPLKIAGAFGFKDIIRAIRR


 


Partial plasmid pCD046 + NDV-F VII YZCQ for vHVT112


Green and Italic = Flanking Arms


BLUE AND UPPERCASE = mCMV IE


Black and Bold = NDV-F VIId wt YZCQ


Red and underlined = SV40 Poly A


(SEQ ID NO: 46)



gagctcagggtatgatactcagctgttattgtggccgaccaggaggactccaatgctta



 


gcattcataagaacgctagagatgctatttaacgatgtgctgtcgtctaaagaatttgt


 


gcatttagcctttaaatgtaaaaccaatgacgcattcactacgctcgtgcgtgcaattt


 


ctgggccagggtatgcatattccataacagaaatcgacacttgagaagaggatctgact


 


gtttgggataaaggtcgtttgggtctgtcctagcgatataatttatatgacgatataca


 


ttaaacatctgtgtgcagtacttaggtatttaatcatgtcgatgaaatgttatgtgtaa


 


atatcggacaatatagataacgggcacgctgctattgtaacgtgcgcccgcgcgctagt


 


gctgactaatagtgtggatgatgtatacagtatattacaaacggaaatgatacgtaata


 


aattatgtactcttattgatttataaaaacatacatgcagtgttgctatgtcacataat


 


tagcctcgcccgtctacgctccactgaagataatgggctcccgctgttcaaaaaaatca


 


gcgtgcgtcgataagactttggtgcagtctcttcggggtcgcaatttagatttgccgca


 


tggagggtatctggggatttttgccaatgctggagcgacgactgtacgattcgtcccat


 


cgggatctagcagaccaatgatgttgacacacatcggccatgcatgtacggacggtcta


 


ttgcgcgagtttgttattttcgaaggacaagatggaagtgtatatggaaccgacaataa


 


tgttagtttgcatttcttagggcggaatctacatgatatcttatccaagcggggtatga


 


gccagagagatgtgatggtcataaagggtaaattttttagatctgaaataacgcagttg


 


cccaaacaacgatcgcgattaaaagaaaaatcggatggttcaattaggacatgcatgga


 


ttctgtgcgcataaaccataaccgcagcactgttgggcacttcggtaactcaaatgcga


 


agcgttgcacgtctgcgataactacgcctactatgcacattgttactcctgcatcttaa


 


aaatatatcctgtagtaattttcacagcaatgtcataacatcatctcgctaaagaatga


 


cctgggattggagaagtaatgaatatttgcaaccaatgcattgaataaactaacattaa


 


acGAATTCAATAGTGGATCCCCCAACTCCGCCCGTTTTATGACTAGAACCAATAGTTTT


 


TAATGCCAAATGCACTGAAATCCCCTAATTTGCAAAGCCAAACGCCCCCTATGTGAGTA


 


ATACGGGGACTTTTTACCCAATTTCCCACGCGGAAAGCCCCCTAATACACTCATATGGC


 


ATATGAATCAGCACGGTCATGCACTCTAATGGCGGCCCATAGGGACTTTCCACATAGGG


 


GGCGTTCACCATTTCCCAGCATAGGGGTGGTGACTCAATGGCCTTTACCCAAGTACATT


 


GGGTCAATGGGAGGTAAGCCAATGGGTTTTTCCCATTACTGGCAAGCACACTGAGTCAA


 


ATGGGACTTTCCACTGGGTTTTGCCCAAGTACATTGGGTCAATGGGAGGTGAGCCAATG


 


GGAAAAACCCATTGCTGCCAAGTACACTGACTCAATAGGGACTTTCCAATGGGTTTTTC


 


CATTGTTGGCAAGCATATAAGGTCAATGTGGGTGAGTCAATAGGGACTTTCCATTGTAT


 


TCTGCCCAGTACATAAGGTCAATAGGGGGTGAATCAACAGGAAAGTCCCATTGGAGCCA


 


AGTACACTGCGTCAATAGGGACTTTCCATTGGGTTTTGCCCAGTACATAAGGTCAATAG


 


GGGATGAGTCAATGGGAAAAACCCATTGGAGCCAAGTACACTGACTCAATAGGGACTTT


 


CCATTGGGTTTTGCCCAGTACATAAGGTCAATAGGGGGTGAGTCAACAGGAAAGTTCCA


 


TTGGAGCCAAGTACATTGAGTCAATAGGGACTTTCCAATGGGTTTTGCCCAGTACATAA


 


GGTCAATGGGAGGTAAGCCAATGGGTTTTTCCCATTACTGGCACGTATACTGAGTCATT


 


AGGGACTTTCCAATGGGTTTTGCCCAGTACATAAGGTCAATAGGGGTGAATCAACAGGA


 


AAGTCCCATTGGAGCCAAGTACACTGAGTCAATAGGGACTTTCCATTGGGTTTTGCCCA


 


GTACAAAAGGTCAATAGGGGGTGAGTCAATGGGTTTTTCCCATTATTGGCACGTACATA


 


AGGTCAATAGGGGTGAGTCATTGGGTTTTTCCAGCCAATTTAATTAAAACGCCATGTAC


 


TTTCCCACCATTGACGTCAATGGGCTATTGAAACTAATGCAACGTGACCTTTAAACGGT


 


ACTTTCCCATAGCTGATTAATGGGAAAGTACCGTTCTCGAGCCAATACACGTCAATGGG


 


AAGTGAAAGGGCAGCCAAAACGTAACACCGCCCCGGTTTTCCCCTGGAAATTCCATATT


 


GGCACGCATTCTATTGGCTGAGCTGCGTTCTACGTGGGTATAAGAGGCGCGACCAGCGT


 


CGGTACCGTCGCAGTCTTCGGTCTGACCACCGTAGAACGCAGAGCTCCTCGCTGCAGgc


 


ggccgcatgggctctaaaccttctaccaggatcccagcacctctgatgctgatcacccg


 


gattatgctgatattggactgtatccgtccgacaagctctcttgacggcaggcctcttg


 


cagctgcaggaattgtagtaacaggagataaggcagtcaatgtatatacctcgtctcag


 


acagggtcaatcatagtcaagttgctcccgaatatgcccaaggataaggaggcgtgtgc


 


gaaagacccattagaggcatataacagaacactgactactttgctcactcctcttggcg


 


aatccatccgcaagatccaagggtctgtgtccacgtctggaggaggcaagcaaggccgc


 


ctgataggtgctgttattggtagtgtagctcttggggttgcaacagcggcacaaataac


 


agcagctgcggccctaatacaagccaaccagaatgctgccaacatccttcggcttaagg


 


agagcattgctgcaaccaatgaagctgtgcatgaagtcaccgacggattatcacaacta


 


tcagtggcagttgggaagatgcagcagtttgtcaatgaccagtttaataatacagcgcg


 


agaattggactgtataaaaatcacacaacaggttggtgtagaactcaacctatacctaa


 


ctgaattgactacagtattcgggccacagatcacctcccctgcattaactcagctgacc


 


atccaggcactttataatttagctggtggcaatatggattacttattaactaagttagg


 


tatagggaacaatcaactcagctcattaattggcagcggcctgatcactggttacccta


 


tattgtatgactcacagactcaactcttgggcatacaagtgaatttgccctcagtcggg


 


aacttaaataatatgcgtgccacctatttagagaccttatctgtaagtacagccaaagg


 


atatgcctcagcacttgttccaaaagtagtgacacaagtcggttctgtgatagaagagc


 


ttgacacctcatactgtatagagtccgatctggatttatattgtactagaatagtgaca


 


ttccccatgtccccaggtatttattcctgtttaagcggcaacacatcagcttgcatgta


 


ttcaaagactgaaggcgcactcactacgccgtatatggcccttaaaggctcagttattg


 


ccaattgtaagataacaacatgtagatgtacagaccctcctggtatcatatcgcaaaat


 


tatggagaagctgtatccctgatagatagacattcgtgcaatgtcttatcattagacgg


 


gataactctgaggctcagtggagaatttgatgcaacttatcaaaagaacatctcaatac


 


tagattctcaagtcatcgtgacaggcaatcttgatatatcaactgaacttggaaacgtc


 


aacaattcaatcagcaatgccttggataagttggcaaaaagcaacagcaagctagaaaa


 


agtcaatgtcagactaaccagcacatccgctctcattacctatattgttctgactgtca


 


tttctctagttttcggtgcactaagtctgggtttaacatgttacctgatgtacaaacaa


 


aaggcacaacaaaagaccttgctatggcttgggaataataccctcgatcagatgagagc


 


cactacaagagcatgagcggccgcggggatccagacatgataagatacattgatgagtt


 


tggacaaaccacaactagaatgcagtgaaaaaaatgctttatttgtgaaatttgtgatg


 


ctattgctttatttgtaaccattataagctgcaataaacaagttaacaacaacaattgc


 


attgattttatgtttcaggttcagggggaggtgtgggaggttttttcggatcctctaga


 


gtcgacaattattttatttaataacatatagcccaaagacctctatgaacatttagttt


 


cccgtatactcaacggcgcgtgtacacacgcatctctttgcatagcgatgaagtttgtt


 


cggcagcagaaaatgcagatatccaacaatctggagaaaacttatcatcacagtggcag


 


tggaaacataccccctctatattcatggtataattatcgtctacagcgtccaggatagt


 


ggcgtgagaaaatggagatctgcagccctcctttccatggcatgccgctttattgttca


 


ttaaacgcacaatggtctcaacgccagatatgggcatagattctgaagaacccgttgac


 


aatccgaagaagaaggcgtgcaggtctttggaagactcgcacgttggtcttataatgta


 


tgatcgagatgtcaccctaatgccacatggtacaggcttatcgcggtcatggcgatcgg


 


acttgtaatttgcaacgatgggcaaaggatcgacgacatgccaaacattctgaacccgt


 


agagatgttaacgatgacgaggatgaatatcccatgctcgctgccatagtatcaagtac


 


accgcgaataaggacgcgtccaacatcgttatatgcacacaatgggctacacgtgacta


 


acacccccgaatattagtcatatgtgagtttcagtctggctcccatatagcctgtagac


 


tatttgtggtttaagtgtgaacgaggcgctgtgaacgagactcgggccgattgtaagaa


 


caagcaaatgcactttccatttaacaagaagtgtagagagaatactcaacctctttgga


 


tgtatcctcgag


 


Partial plasmid pCD046 + NDV Texas F or vHVT113


Green and Italic = Flanking Arms


BLUE AND UPPERCASE = mCMV IE


Black and Bold = NDV Texas F


Red and underlined = SV40 Poly A


(SEQ ID NO: 47)



gagctcagggtatgatactcagctgttattgtggccgaccaggaggactccaatgctta



 


gcattcataagaacgctagagatgctatttaacgatgtgctgtcgtctaaagaatttgt


 


gcatttagcctttaaatgtaaaaccaatgacgcattcactacgctcgtgcgtgcaattt


 


ctgggccagggtatgcatattccataacagaaatcgacacttgagaagaggatctgact


 


gtttgggataaaggtcgtttgggtctgtcctagcgatataatttatatgacgatataca


 


ttaaacatctgtgtgcagtacttaggtatttaatcatgtcgatgaaatgttatgtgtaa


 


atatcggacaatatagataacgggcacgctgctattgtaacgtgcgcccgcgcgctagt


 


gctgactaatagtgtggatgatgtatacagtatattacaaacggaaatgatacgtaata


 


aattatgtactcttattgatttataaaaacatacatgcagtgttgctatgtcacataat


 


tagcctcgcccgtctacgctccactgaagataatgggctcccgctgttcaaaaaaatca


 


gcgtgcgtcgataagactttggtgcagtctcttcggggtcgcaatttagatttgccgca


 


tggagggtatctggggatttttgccaatgctggagcgacgactgtacgattcgtcccat


 


cgggatctagcagaccaatgatgttgacacacatcggccatgcatgtacggacggtcta


 


ttgcgcgagtttgttattttcgaaggacaagatggaagtgtatatggaaccgacaataa


 


tgttagtttgcatttcttagggcggaatctacatgatatcttatccaagcggggtatga


 


gccagagagatgtgatggtcataaagggtaaattttttagatctgaaataacgcagttg


 


cccaaacaacgatcgcgattaaaagaaaaatcggatggttcaattaggacatgcatgga


 


ttctgtgcgcataaaccataaccgcagcactgttgggcacttcggtaactcaaatgcga


 


agcgttgcacgtctgcgataactacgcctactatgcacattgttactcctgcatcttaa


 


aaatatatcctgtagtaattttcacagcaatgtcataacatcatctcgctaaagaatga


 


cctgggattggagaagtaatgaatatttgcaaccaatgcattgaataaactaacattaa


 


acGAATTCAATAGTGGATCCCCCAACTCCGCCCGTTTTATGACTAGAACCAATAGTTTT


 


TAATGCCAAATGCACTGAAATCCCCTAATTTGCAAAGCCAAACGCCCCCTATGTGAGTA


 


ATACGGGGACTTTTTACCCAATTTCCCACGCGGAAAGCCCCCTAATACACTCATATGGC


 


ATATGAATCAGCACGGTCATGCACTCTAATGGCGGCCCATAGGGACTTTCCACATAGGG


 


GGCGTTCACCATTTCCCAGCATAGGGGTGGTGACTCAATGGCCTTTACCCAAGTACATT


 


GGGTCAATGGGAGGTAAGCCAATGGGTTTTTCCCATTACTGGCAAGCACACTGAGTCAA


 


ATGGGACTTTCCACTGGGTTTTGCCCAAGTACATTGGGTCAATGGGAGGTGAGCCAATG


 


GGAAAAACCCATTGCTGCCAAGTACACTGACTCAATAGGGACTTTCCAATGGGTTTTTC


 


CATTGTTGGCAAGCATATAAGGTCAATGTGGGTGAGTCAATAGGGACTTTCCATTGTAT


 


TCTGCCCAGTACATAAGGTCAATAGGGGGTGAATCAACAGGAAAGTCCCATTGGAGCCA


 


AGTACACTGCGTCAATAGGGACTTTCCATTGGGTTTTGCCCAGTACATAAGGTCAATAG


 


GGGATGAGTCAATGGGAAAAACCCATTGGAGCCAAGTACACTGACTCAATAGGGACTTT


 


CCATTGGGTTTTGCCCAGTACATAAGGTCAATAGGGGGTGAGTCAACAGGAAAGTTCCA


 


TTGGAGCCAAGTACATTGAGTCAATAGGGACTTTCCAATGGGTTTTGCCCAGTACATAA


 


GGTCAATGGGAGGTAAGCCAATGGGTTTTTCCCATTACTGGCACGTATACTGAGTCATT


 


AGGGACTTTCCAATGGGTTTTGCCCAGTACATAAGGTCAATAGGGGTGAATCAACAGGA


 


AAGTCCCATTGGAGCCAAGTACACTGAGTCAATAGGGACTTTCCATTGGGTTTTGCCCA


 


GTACAAAAGGTCAATAGGGGGTGAGTCAATGGGTTTTTCCCATTATTGGCACGTACATA


 


AGGTCAATAGGGGTGAGTCATTGGGTTTTTCCAGCCAATTTAATTAAAACGCCATGTAC


 


TTTCCCACCATTGACGTCAATGGGCTATTGAAACTAATGCAACGTGACCTTTAAACGGT


 


ACTTTCCCATAGCTGATTAATGGGAAAGTACCGTTCTCGAGCCAATACACGTCAATGGG


 


AAGTGAAAGGGCAGCCAAAACGTAACACCGCCCCGGTTTTCCCCTGGAAATTCCATATT


 


GGCACGCATTCTATTGGCTGAGCTGCGTTCTACGTGGGTATAAGAGGCGCGACCAGGCT


 


CGGTACCGTCGCAGTCTTCGGTCTGACCACCGTAGAACGCAGAGCTCCTCGCTGCAGgc


 


ggccgcatgggctccagatcttctaccaggatcccggtacctctaatgctgatcatccg


 


aaccgcgctgacactgagctgtatccgtctgacaagctctcttgatggcaggcctcttg


 


cggctgcagggatcgtggtaacaggagataaagcagtcaacatatacacctcatcccag


 


acagggtcaatcatagttaagttactcccgaatatgcccaaggacaaagaggtgtgtgc


 


aaaagccccattggaggcatacaacaggacactgactactttactcaccccccttggtg


 


attctatccgcaggatacaagagtctgtgactacttccggaggaggcaagcaaggccgc


 


ctgataggtgccattatcggcagtgtagctcttggggttgcgacagctgcacagataac


 


agcagcttcggccctgatacaagccaaccagaatgctgccaacatcctccggcttaaag


 


agagcattgctgcaaccaatgaagctgtgcacgaggtcactgacggattatcacaacta


 


gcagtggcagtagggaagatgcaacagtttgtcaatgaccagttcaataatacagcgca


 


agaattggactgtataaaaattgcacagcaggtcggtgtagaactcaacttgtacctaa


 


ctgaattgactacagtatttgggccacaaatcacttcccctgccttaactcagctgact


 


atccaagcgctttacaatctagctggtggtaatatggattacttgctgactaagttagg


 


tgtagggaacaaccaactcagctcattaattggtagcggcttgatcaccggcaacccta


 


ttctgtacgactcacagactcagatcttgggtatacaggtaactttgccttcagttggg


 


aacctgaataatatgcgtgccacctacctggagaccttatctgtaagcacaaccaaggg


 


atttgcctcagcacttgtcccaaaagtggtgacacaggtcggttccgtgatagaagaac


 


ttgacacctcatactgtatagggaccgacttggatttatactgtacaagaatagtgaca


 


ttccctatgtctcctggtatttattcttgtctgagcggtaatacatcggcttgcatgta


 


ttcaaagactgaaggcgcacttactacgccatatatggctctcaaaggctcagttattg


 


ccaattgcaagctgacaacatgtagatgtgcagatcccccaggtatcatatcgcaaaat


 


tatggagaagctgtgtccttaatagataggcactcatgcaacgtcttatccttagacgg


 


gataactctgaggctcagtggggaatttgatgcaacctatcaaaagaatatctctatac


 


tagattctcaagttatagtgacaggcaatcttgatatatcaactgagcttgggaatgtc


 


aacaactcaataagtaatgccctgaataagttagaggaaagcaacagcaaactagacaa


 


agtcaatgtcaaactgaccagcacatctgctctcattacctacatcgttttaactgtca


 


tatctcttgtttttggtgtacttagcctggttctagcatgctacctgatgtacaagcaa


 


aaggcacaacaaaagaccttgttatggcttgggaataatacccttgatcagatgagagc


 


cactacaaaaatatgagcggccgcggggatccagacatgataagatacattgatgagtt


 


tggacaaaccacaactagaatgcagtgaaaaaaatgctttatttgtgaaatttgtgatg


 


ctattgctttatttgtaaccattataagctgcaataaacaagttaacaacaacaattgc


 


attgattttatgtttcaggttcagggggaggtgtgggaggttttttcggatcctctaga


 


gtcgacaattattttatttaataacatatagcccaaagacctctatgaacatttagttt


 


cccgtatactcaacggcgcgtgtacacacgcatctctttgcatagcgatgaagtttgtt


 


cggcagcagaaaatgcagatatccaacaatctggagaaaacttatcatcacagtggcag


 


tggaaacataccccctctatattcatggtataattatcgtctacagcgtccaggatagt


 


ggcgtgagaaaatggagatctgcagccctcctttccatggcatgccgctttattgttca


 


ttaaacgcacaatggtctcaacgccagatatgggcatagattctgaagaacccgttgac


 


aatccgaagaagaaggcgtgcaggtctttggaagactcgcacgttggtcttataatgta


 


tgatcgagatgtcaccctaatgccacatggtacaggcttatcgcggtcatggcgatcgg


 


acttgtaatttgcaacgatgggcaaaggatcgacgacatgccaaacattctgaacccgt


 


agagatgttaacgatgacgaggatgaatatcccatgctcgctgccatagtatcaagtac


 


accgcgaataaggacgcgtccaacatcgttatatgcacacaatgggctacacgtgacta


 


acacccccgaatattagtcatatgtgagtttcagtctggctcccatatagcctgtagac


 


tatttgtggtttaagtgtgaacgaggcgctgtgaacgagactcgggccgattgtaagaa


 


caagcaaatgcactttccatttaacaagaagtgtagagagaatactcaacctctttgga


 


tgtatcctcgag


 


Partial plasmid pHM119 sequence for vHVT039


Green and Italic = BamHI fragment I intergenic Recombination Arms


BLUE AND UPPERCASE = MDV gB PROMOTER


Black and Bold = NDV-F wild type unmodified Texas strain sequence


Red and Italic and Underlined = SV40 Poly A tail


(SEQ ID NO: 48)



gagctcagggtatgatactcagctgttattgtggccgaccaggaggactccaatgctta



 


gcattcataagaacgctagagatgctatttaacgatgtgctgtcgtctaaagaatttgt


 


gcatttagcctttaaatgtaaaaccaatgacgcattcactacgctcgtgcgtgcaattt


 


ctgggccagggtatgcatattccataacagaaatcgacacttgagaagaggatctgact


 


gtttgggataaaggtcgtttgggtctgtcctagcgatataatttatatgacgatataca


 


ttaaacatctgtgtgcagtacttaggtatttaatcatgtcgatgaaatgttatgtgtaa


 


atatcggacaatatagataacgggcacgctgctattgtaacgtgcgcccgcgcgctagt


 


gctgactaatagtgtggatgatgtatacagtatattacaaacggaaatgatacgtaata


 


aattatgtactcttattgatttataaaaacatacatgcagtgttgctatgtcacataat


 


tagcctcgcccgtctacgctccactgaagataatgggctcccgctgttcaaaaaaatca


 


gcgtgcgtcgataagactttggtgcagtctcttcggggtcgcaatttagatttgccgca


 


tggagggtatctggggatttttgccaatgctggagcgacgactgtacgattcgtcccat


 


cgggatctagcagaccaatgatgttgacacacatcggccatgcatgtacggacggtcta


 


ttgcgcgagtttgttattttcgaaggacaagatggaagtgtatatggaaccgacaataa


 


tgttagtttgcatttcttagggcggaatctacatgatatcttatccaagcggggtatga


 


gccagagagatgtgatggtcataaagggtaaattttttagatctgaaataacgcagttg


 


cccaaacaacgatcgcgattaaaagaaaaatcggatggttcaattaggacatgcatgga


 


ttctgtgcgcataaaccataaccgcagcactgttgggcacttcggtaactcaaatgcga


 


agcgttgcacgtctgcgataactacgcctactatgcacattgttactcctgcatcttaa


 


aaatatatcctgtagtaattttcacagcaatgtcataacatcatctcgctaaagaatga


 


cctgggattggagaagtaatgaatatttgcaaccaatgcattgaataaactaacattaa


 


acgaattcCGATGTTTAGTCACGATAGACATCGGTTCGCCCAGCCGTCGAATACAGCAT


 


TATATTTTAGTGTTGAAAATGTAGGGCTGCTTCCTCACTTAAAGGAGGAAATGGCTCGA


 


TTCATGTTTCATAGCAGTAGAAAAACAGATTGGACCGTCAGTAAGTTTAGAGGGTTTTA


 


TGACTTTAGCACTATAGATAATGTAACTGCGGCCCATCGCATGGCTTGGAAATATATCA


 


AAGAACTGATTTTTGCAACAGCTTTATTTTCTTCTGTATTTAAATGTGGCGAATTGCAC


 


ATCTGTCGTGCCGACAGTTTGCAGATCAACAGCAATGGAGACTATGTATGGAAAAATGG


 


AATATATATAACATATGAAACCGAATATCCACTTATAATGATTCTGGGGTCAGAATCAA


 


GCACTTCAGAAACGCAAAATATGACTGCAATTATTGATACAGATTTTTTTCGGTTGCTT


 


TATTCTATTTTGCAGTATATGGCCCCCGTTACGGCAGATCAGGTGCGAGTAGAACAGAT


 


TACCAACAGCCACGCCCCCATCTGACCCGTCCAATATTCTTGTGTCCCTGCATTTTATC


 


TCACACAATTTATGAACAGCATCATTAAGATCATCTCACTgcggccgcaagatgggctc


 


cagatcttctaccaggatcccggtacctctaatgctgatcatccgaaccgcgctgacac


 


tgagctgtatccgtctgacaagctctcttgatggcaggcctcttgcggctgcagggatc


 


gtggtaacaggagataaagcagtcaacatatacacctcatcccagacagggtcaatcat


 


agttaagttactcccgaatatgcccaaggacaaagaggtgtgtgcaaaagccccattgg


 


aggcatacaacaggacactgactactttactcaccccccttggtgattctatccgcagg


 


atacaagagtctgtgactacttccggaggaaggagacagagacgctttataggtgccat


 


tatcggcagtgtagctcttggggttgcgacagctgcacagataacagcagcttcggccc


 


tgatacaagccaaccagaatgctgccaacatcctccggcttaaagagagcattgctgca


 


accaatgaagctgtgcacgaggtcactgacggattatcacaactagcagtggcagtagg


 


gaagatgcaacagtttgtcaatgaccagttcaataatacagcgcaagaattggactgta


 


taaaaattgcacagcaggtcggtgtagaactcaacttgtacctaactgaattgactaca


 


gtatttgggccacaaatcacttcccctgccttaactcagctgactatccaagcgcttta


 


caatctagctggtggtaatatggattacttgctgactaagttaggtgtagggaacaacc


 


aactcagctcattaattggtagcggcttgatcaccggcaaccctattctgtacgactca


 


cagactcagatcttgggtatacaggtaactttgccttcagttgggaacctgaataatat


 


gcgtgccacctacctggagaccttatctgtaagcacaaccaagggatttgcctcagcac


 


ttgtcccaaaagtggtgacacaggtcggttccgtgatagaagaacttgacacctcatac


 


tgtatagggaccgacttggatttatactgtacaagaatagtgacattccctatgtctcc


 


tggtatttattcttgtctgagcggtaatacatcggcttgcatgtattcaaagactgaag


 


gcgcacttactacgccatatatggctctcaaaggctcagttattgccaattgcaagctg


 


acaacatgtagatgtgcagatcccccaggtatcatatcgcaaaattatggagaagctgt


 


gtccttaatagataggcactcatgcaacgtcttatccttagacgggataactctgaggc


 


tcagtggggaatttgatgcaacctatcaaaagaatatctctatactagattctcaagtt


 


atagtgacaggcaatcttgatatatcaactgagcttgggaatgtcaacaactcaataag


 


taatgccctgaataagttagaggaaagcaacagcaaactagacaaagtcaatgtcaaac


 


tgaccagcacatctgctctcattacctacatcgttttaactgtcatatctcttgttttt


 


ggtgtacttagcctggttctagcatgctacctgatgtacaagcaaaaggcacaacaaaa


 


gaccttgttatggcttgggaataatacccttgatcagatgagagccactacaaaaatat


 


gagcggccgcggggatccagacatgataagatacattgatgagtttggacaaaccacaa


 


ctagaatgcagtgaaaaaaatgctttatttgtgaaatttgtgatgctattgctttattt


 


gtaaccattataagctgcaataaacaagttaacaacaacaattgcattcattttatgtt


 


tcaggttcagggggaggtgtgggaggttttttcggatcctctagagtcgacaattattt


 


tatttaataacatatagcccaaagacctctatgaacatttagtttcccgtatactcaac


 


ggcgcgtgtacacacgcatctctttgcatagcgatgaagtttgttcggcagcagaaaat


 


gcagatatccaacaatctggagaaaacttatcatcacagtggcagtggaaacatacccc


 


ctctatattcatggtataattatcgtctacagcgtccaggatagtggcgtgagaaaatg


 


gagatctgcagccctcctttccatggcatgccgctttattgttcattaaacgcacaatg


 


gtctcaacgccagatatgggcatagattctgaagaacccgttgacaatccgaagaagaa


 


ggcgtgcaggtctttggaagactcgcacgttggtcttataatgtatgatcgagatgtca


 


ccctaatgccacatggtacaggcttatcgcggtcatggcgatcggacttgtaatttgca


 


acgatgggcaaaggatcgacgacatgccaaacattctgaacccgtagagatgttaacga


 


tgacgaggatgaatatcccatgctcgctgccatagtatcaagtacaccgcgaataagga


 


cgcgtccaacatcgttatatgcacacaatgggctacacgtgactaacacccccgaatat


 


tagtcatatgtgagtttcagtctggctcccatatagcctgtagactatttgtggtttaa


 


gtgtgaacgaggcgctgtgaacgagactcgggccgattgtaagaacaagcaaatgcact


 


ttccatttaacaagaagtgtagagagaatactcaacctctttggatgtatcctcgag


 


Partial plasmid SORF3-US2 gp Var-Ewtsyn sequence (for vHVT202)


Green and Italic = Flanking Arms


BLUE AND UPPERCASE = GPCMV


Black and Bold = Varient E wt


Red and Italic and Underlined = Syn Poly A


(SEQ ID NO: 56)



taaaatgggatctatcattacattcgttaagagtctggataattttactgtttgccagc



 


ttcgatcttggaacgtactgtggatagtgccttacttggaatcgtgaaaatttgaaacg


 


tccattatttggatatcttccggttgtcccatatcccgccctggtaccgctcggatacc


 


ttgcccgtatggattcgtattgacagtcgcgcaatcggggaccaacaacgcgtgggtcc


 


acactcattcggaaattttccgatgattctgaatatttattgccgctcgttacgagtcg


 


ttggacatatctgtaatacatttcttcttctgaaggatcgctgcacatttgatctatac


 


attggccaggatgttcaagtctcagatgttgcattctggcacagcacaactttatggca


 


tttccgatgtaatcgtccggcagccctgggggagttctatattcgcatattgggatggt


 


aaggacaatagcagatctcgcaacctccagggaggctataataacgtttttaaaggatg


 


gatttctcataaaaatctgtcgcaaattacactgagaatatcctttactagcgccgatt


 


gagagcatcgtcgtccaattttctaaatggaaagaaaacaaggcgggcaagagtgttcc


 


aaacattttcattttcggcgaatctctcaaatcccatggcgtgcaattgattgcaaaat


 


tggcacttccgttcacgtttgtatctccaaactctaagacacttttaattgaaaaacta


 


cgttctagtgtggaaagaaacctataggcagaccatagaactatttgacaccacatatc


 


tttttgtatgtcaaactgaccatgatcgtatgttgctgaatgcactagggcaattcgct


 


cgcgcgactccatacattgaataattccacacgtcagctcatcggttagcaaggtccag


 


tagttgaagtcatttatttttccccgcggctggccaaatctacctctgggaatatccaa


 


gttgtcgaatatgatcgcaccggctctggtcatggtgaaggaacttgtagcataaagac


 


gcaggtatcataggggtaatatttttttattcactcacatactaaaagtaacgcatatt


 


agcaccatgtatgggctatcaattgacatttgcgtagcactacatcacgattatgtaca


 


acataatgggacaacatatgcctgcaggTTAGTCATATGTTACTTGGCAGAGGCCGCAT


 


GGAAAGTCCCTGGACGTGGGACATCTGATTAATACGTGAGGAGGTCAGCCATGTTCTTT


 


TTGGCAAAGGACTACGGTCATTGGACGTTTGATTGGCATGGGATAGGGTCAGCCAGAGT


 


TAACAGTGTTCTTTTGGCAAAGGGATACGTGGAAAGTCCCGGGCCATTTACAGTAAACT


 


GATACGGGGACAAAGCACAGCCATATTTAGTCATGTATTGCTTGGCAGAGGGTCTATGG


 


AAAGTCCCTGGACGTGGGACGTCTGATTAATATGAAAGAAGGTCAGCCAGAGGTAGCTG


 


TGTCCTTTTTGGCAAAGGGATACGGTTATGGGACGTTTGATTGGACTGGGATAGGGTCA


 


GCCAGAGTTAACAGTGTTCTTTTGGCAAAGGAAACGTGGAAAGTCCCGGGCCATTTACA


 


GTAAACTGATACTGGGACAAAGTACACCCATATTTAGTCATGTTCTTTTTGGCAAAGAG


 


CATCTGGAAAGTCCCGGGCAGCATTATAGTCACTTGGCAGAGGGAAAGGGTCACTCAGA


 


GTTAAGTACATCTTTCCAGGGCCAATATTCCAGTAAATTACACTTAGTTTTATGCAAAT


 


CAGCCACAAAGGGGATTTTCCCGGTCAATTATGACTTTTTCCTTAGTCATGCGGTATCC


 


AATTACTGCCAAATTGGCAGTACATACTAGGTGATTCACTGACATTTGGCCGTCCTCTG


 


GAAAGTCCCTGGAAACCGCTCAAGTACTGTATCATGGTGACTTTGCATTTTTGGAGAGC


 


ACGCCCCACTCCACCATTGGTCCACGTACCCTATGGGGGAGTGGTTTATGAGTATATAA


 


GGGGCTCCGGTTTAGAAGCCGGGCAGAgcggccgcatgacaaacctgcaagatcaaacc


 


caacagattgttccgttcatacggagccttctgatgccaacaaccggaccggcgtccat


 


tccggacgacaccctggagaagcacactctcaggtcagagacctcgacctacaatttga


 


ctgtgggggacacagggtcagggctaattgtctttttccctggattccctggctcaatt


 


gtgggtgctcactacacactgcagagcaatgggaactacaagttcgatcagatgctcct


 


gactgcccagaacctaccggccagctacaactactgcaggctagtgagtcggagtctca


 


cagtaaggtcaagcacactccctggtggcgtttatgcactaaacggcaccataaacgcc


 


gtgaccttccaaggaagcctgagtgaactgacagatgttagctacaacgggttgatgtc


 


tgcaacagccaacatcaacgacaaaattgggaacgtcctagtaggggaaggggtaaccg


 


tcctcagcttacccacatcatatgatcttgggtatgtgaggcttggtgaccccataccc


 


gctatagggcttgacccaaaaatggtagcaacatgtgacagcagtgacaggcccagagt


 


ctacaccataactgcagccgataattaccaattctcatcacagtaccaaacaggtgggg


 


taacaatcacactgttctcagccaacattgatgccatcacaagtctcagcgttggggga


 


gagctcgtgttcaaaacaagcgtccaaagccttgtactgggcgccaccatctaccttat


 


aggctttgatgggactgcggtaatcaccagagctgtggccgcaaacaatgggctgacgg


 


ccggcatcgacaatcttatgccattcaatcttgtgattccaaccaatgagataacccag


 


ccaatcacatccatcaaactggagatagtgacctccaaaagtgatggtcaggcagggga


 


acagatgtcatggtcggcaagtgggagcctagcagtgacgatccatggtggcaactatc


 


caggagccctccgtcccgtcacactagtggcctacgaaagagtggcaacaggatctgtc


 


gttacggtcgctggggtgagcaacttcgagctgatcccaaatcctgaactagcaaagaa


 


cctggttacagaatatggccgatttgacccaggagccatgaactacacgaaattgatac


 


tgagtgagagggaccgccttggcatcaagaccgtctggccaacaagggagtacactgac


 


tttcgtgagtacttcatggaggtggccgacctcaactctcccctgaagattgcaggagc


 


atttggcttcaaagacataatccgggccataaggaggtgagcggccgcgatatcaataa


 


aatatctttattttcattacatctgtgtgttggttttttgtgtgaatcgatagtactaa


 


catacgctctccatcaaaacaaaacgaaacaaaacaaactagcaaaataggctgtcccc


 


agtgcaagtgcaggtgccagaacatttctcttctagacctgcaggcccggggcaagtag


 


atgcaatttcctcacactagttgggtttatctactattgaattttcccctatctgtgat


 


acacttgggagcctctacaagcatattgccatcatgtacgtttttatctactgtcttaa


 


cgcccatgggaacggaggcgtcgtcgtcatgtattggacggcaacataggcagcaacac


 


aaattgcgtttaggtggggtgcatgtggactcgataccaagcccctgcagctggggaac


 


gtctggtggagagccgataatttgatatacgcacgccatattactgtcgttgaagtacg


 


ccttatcttctatgttttcaaatttaggttcccaagtggacgtgagaagtgtttgtatc


 


tcacatggaatggcccaaggcattccagcccaggtgcctggtactttaatggcaaacaa


 


acgttttggtagaggtattgattctattgcagttctgcagatatctgcagccccgagta


 


tccacaggctatacgatacgttatcggaggcctccgattctagcattacatagccggtc


 


agtagatcctgccattcggtagcgcaaccggctacatcttcaaacagtctcacaataaa


 


tgcatctctcgttcctgccaatccggaaccgggcataccactcccgcctgccgatttaa


 


ttctcacaattgggcgatgccggcggggcaaaacgaatgtggatttggcaaaccgacac


 


aggtctgctgtacggactaatatgggcacacccacatcattcttcagatgctccatgca


 


ttgttctatgagaaagatccatagggtggaggcagcgtcacgagatcgcccaggcaatc


 


gatcgcattcgtctagtaaagtgacgagagttatcatgcacacacccatgcccacgcct


 


tccgaataactggagctgtggaagatcggaaacgtctttttgactgccggtctcgtact


 


actttcgcacaggtgtatacccggacgcgtactatatattttatatcatccaacgtccc


 


gaaattacatacgtggcggcgatggaagtagatgttgagtcttcgaaagtaagtgcctc


 


gaatatgggtattgtctgtgaaaatatcgaaagcggtacgacggttgcagaaccgtcga


 


tgtcgccagatactagtaacaatagcttcgataacgaagacttccgtgggcctgaatac


 


gatgtggagata


 


Partial plasmid SB1US2 gpVIIdwtsyn sequence (for vSB1-010)


Green and Italic = Flanking Arms


BLUE AND UPPERCASE = GPCMV


Black and Bold = NDV-F VIId wt


Red and Italic and Underlined = Syn Poly A


(SEQ ID NO: 57)



tctcgtctaaaacgctccagtgctttacagttcgataatctggacctggggacgcgtat



 


aggatcgttcctccacatgcgctgctgtcggtatctcgaatccccggtattcagttgga


 


tcgttggcggagtgtcctcctggactctgcaatgttccctagccgtcttcactatctcg


 


tgcaaggctctataatacagttcctctgcagacccgtcgttgctcttcccttctgcgtc


 


gttagttatttctgtaggctccagacgatttgcctgcatttgtgcgcaacataatctga


 


ttgcattccctatctcgtcttccggtaatcccataggtgttcggtattcgcagataggt


 


agagaaagcaccactgcaaatcgtgcaatttccattgccccaaccaatattttttttaa


 


gaacggcatcgccgttaatgtacctcgggcattgtgacgatcgaaacccttatggatgc


 


ctaaagagagcattgcggtccagttctccaggtgaaaagagaatagcgcgggtagaaac


 


gggccgattagttttatcttcgccgcgtccctaatatcccaagttctgcagtataactt


 


ccatcgtccgttttcgacaaggtccggcgcgacatagtttgaaatgtcatctatcagaa


 


acatctcgcccatcgtagaaaaaaacctgtacgcagaccataaaaccattcggtaccac


 


atatccttgtgtatatcaaacgatatgttggttatgtcgttggcggatgttgtatgaaa


 


tagagctaagcgttctctggattccacgcactgaacgattccgttagtcaattcatctg


 


ctaacataggccaaaagtttattcgtgttacttttctcggcggtttggcaaaacgcccc


 


cttggcacatccatgtcattaaatacagcggcataactcctactcatgtgttccatagc


 


ccaggtttctgttcggtctgctactacgatcagatcagtggcgcgatcagatgcgtggg


 


atgaatgaagtgtatccgaaagcagttttgagatatacgctaaactgtacgacgattgt


 


ggcactaaacgaagctttgcgcgacccccatcccacgccctgcaggTTAGTCATATGTT


 


ACTTGGCAGAGGCCGCATGGAAAGTCCCTGGACGTGGGACATCTGATTAATACGTGAGG


 


AGGTCAGCCATGTTCTTTTTGGCAAAGGACTACGGTCATTGGACGTTTGATTGGCATGG


 


GATAGGGTCAGCCAGAGTTAACAGTGTTCTTTTGGCAAAGGGATACGTGGAAAGTCCCG


 


GGCCATTTACAGTAAACTGATACGGGGACAAAGCACAGCCATATTTAGTCATGTATTGC


 


TTGGCAGAGGGTCTATGGAAAGTCCCTGGACGTGGGACGTCTGATTAATATGAAAGAAG


 


GTCAGCCAGAGGTAGCTGTGTCCTTTTTGGCAAAGGGATACGGTTATGGGACGTTTGAT


 


TGGACTGGGATAGGGTCAGCCAGAGTTAACAGTGTTCTTTTGGCAAAGGAAACGTGGAA


 


AGTCCCGGGCCATTTACAGTAAACTGATACTGGGACAAAGTACACCCATATTTAGTCAT


 


GTTCTTTTTGGCAAAGAGCATCTGGAAAGTCCCGGGCAGCATTATAGTCACTTGGCAGA


 


GGGAAAGGGTCACTCAGAGTTAAGTACATCTTTCCAGGGCCAATATTCCAGTAAATTAC


 


ACTTAGTTTTATGCAAATCAGCCACAAAGGGGATTTTCCCGGTCAATTATGACTTTTTC


 


CTTAGTCATGCGGTATCCAATTACTGCCAAATTGGCAGTACATACTAGGTGATTCACTG


 


ACATTTGGCCGTCCTCTGGAAAGTCCCTGGAAACCGCTCAAGTACTGTATCATGGTGAC


 


TTTGCATTTTTGGAGAGCACGCCCCACTCCACCATTGGTCCACGTACCCTATGGGGGAG


 


TGGTTTATGAGTATATAAGGGGCTCCGGTTTAGAAGCCGGGCAGAgcggccgcatgggc


 


tccaaaccttctaccaggatcccagcacctctgatgctgatcacccggattatgctgat


 


attgggctgtatccgtccgacaagctctcttgacggcaggcctcttgcagctgcaggaa


 


ttgtagtaacaggagataaggcagtcaatgtatacacttcgtctcagacagggtcaatc


 


atagtcaagttgctcccgaatatgcccagggataaggaggcgtgtgcaaaagccccatt


 


agaggcatataacagaacactgactactttgctcactcctcttggcgactccatccgca


 


agatccaagggtctgtgtccacatctggaggaggcaagcaaggccgcctgataggtgct


 


gttattggcagtgtagctcttggggttgcaacagcggcacagataacagcagctgcggc


 


cctaatacaagccaaccagaatgccgccaacatcctccggcttaaggagagcattgctg


 


caaccaatgaagctgtgcatgaagtcaccgacggattatcacaactatcagtggcagtt


 


gggaagatgcagcagtttgtcaatgaccagtttaataatacggcgcgagaattggactg


 


tataaaaatcacacaacaggttggtgtagaactcaacctatacctaactgaattgacta


 


cagtattcgggccacagatcacctcccctgcattaactcagctgaccatccaggcactt


 


tataatttagctggtggcaatatggattacttattaactaagttaggtatagggaacaa


 


tcaactcagctcgttaattggtagcggcctgatcactggttaccctatactgtatgact


 


cacagactcaactcttgggcatacaagtgaatttaccctcagtcgggaacttaaataat


 


atgcgtgccacctatttggagaccttatctgtaagtacaaccaaaggatatgcctcagc


 


acttgtcccgaaagtagtgacacaagtcggttccgtgatagaagagcttgacacctcat


 


actgtatagagtccgatctggatttatattgtactagaatagtgacattccccatgtcc


 


ccaggtatttattcctgtttgagcggcaacacatcagcttgcatgtattcaaagactga


 


aggcgcactcactacgccgtatatggcccttaaaggctcagttattgccaattgtaaaa


 


taacaacatgtagatgtacagaccctcctggtatcatatcgcaaaattatggagaagct


 


gtatccctgatagatagacattcgtgcaatgtcttatcattagacgggataactctaag


 


gctcagtggggaatttgatgcaacttatcaaaagaacatctcaatactagattctcaag


 


tcatcgtgacaggcaatcttgatatatcaactgaacttggaaacgtcaacaattcaatc


 


agcaatgccttggataggttggcagaaagcaacagcaagctagaaaaagtcaatgtcag


 


actaaccagcacatctgctctcattacctatattgttctaactgtcatttctctagttt


 


tcggtgcacttagtctggtgttagcgtgttacctgatgtacaaacagaaggcacaacaa


 


aagaccttgctatggcttgggaataataccctcgatcagatgagagccactacaagagc


 


atgagcggccgcgatatcaataaaatatctttattttcattacatctgtgtgttggttt


 


tttgtgtgaatcgatagtactaacatacgctctccatcaaaacaaaacgaaacaaaaca


 


aactagcaaaataggctgtccccagtgcaagtgcaggtgccagaacatttctcttctag


 


acctgcaggggagtctgtgcaaggttaatgaccctcgcagttcattcggaagttataac


 


tgccgccttcgcacatttctttttgtcctgttttgtattgccataacagataggaattg


 


aaacctgatcctcctgttttttgcagcatggccagcaacagaatactttgtcggatcga


 


ctacttgcgcgagatggttccgttcttggaggtttcggcgggtcgggtggagaacctat


 


tattttatacacacacgtcataccgttgtcgcgaaaatgttctttgtcttctgccgtct


 


cgaacgtcggttcccacgtagacgttaggagcgttggaatggtatcaggaagagcccac


 


ggcatgccggaccaagtacccgctactttgaccgcgagcagtctcttcggtaatgggat


 


gtattccagagcagcgcggcagagatcagcggcccccactatccacagactgtatgaag


 


tgttttctgaaacatcggactccaacatcaaatatccagacataacatcttgccattcg


 


gaagcacatccgccgacatcttcaaatagcctaactataaacgagtctctagttcctgc


 


taacccagtacctcgaatgccagtcccatccggtgggttcgtcctgataatcggtctct


 


gacgccgaggaagaactaaaaggggtctggaaaagcggaacagatctgcagaccgaacg


 


actacagacacgcccacatcatcatgtatctgttccatgcattgctttatgagaaaaat


 


ccataaggccgaggcggcatctctagatctcccggggagtctctcgcactcatctagga


 


gagtgacgacagttatcatagacacgcccatttgtgcaccaaacgaaaagttcctgtac


 


tggtggagcgtcggcgcgggaatcggtccgtgctctgaaaccagtgtctagacagaaga


 


ccatccggtaaattctggtgtatgaactgacggtctccagacgaacgtcgaagacatta


 


acgatggaaactaacgagctttcttcaaaagtgtctgattacaacgctaatagacctta


 


cgaaactatacgcagcgataccagtgacacagatccgtcggtgtcg


 


The nucleotide sequence of the cloned NDV Texas F gene (wild type non-modified)


(SEQ ID NO: 49)



ATGGGCTCCAGATCTTCTACCAGGATCCCGGTACCTCTAATGCTGATCATCCGAACCGC



 


GCTGACACTGAGCTGTATCCGTCTGACAAGCTCTCTTGATGGCAGGCCTCTTGCGGCTG


 


CAGGGATCGTGGTAACAGGAGATAAAGCAGTCAACATATACACCTCATCCCAGACAGGG


 


TCAATCATAGTTAAGTTACTCCCGAATATGCCCAAGGACAAAGAGGTGTGTGCAAAAGC


 


CCCATTGGAGGCATACAACAGGACACTGACTACTTTACTCACCCCCCTTGGTGATTCTA


 


TCCGCAGGATACAAGAGTCTGTGACTACTTCCGGAGGAAGGAGACAGAGACGCTTTATA


 


GGTGCCATTATCGGCAGTGTAGCTCTTGGGGTTGCGACAGCTGCACAGATAACAGCAGC


 


TTCGGCCCTGATACAAGCCAACCAGAATGCTGCCAACATCCTCCGGCTTAAAGAGAGCA


 


TTGCTGCAACCAATGAAGCTGTGCACGAGGTCACTGACGGATTATCACAACTAGCAGTG


 


GCAGTAGGGAAGATGCAACAGTTTGTCAATGACCAGTTCAATAATACAGCGCAAGAATT


 


GGACTGTATAAAAATTGCACAGCAGGTCGGTGTAGAACTCAACTTGTACCTAACTGAAT


 


TGACTACAGTATTTGGGCCACAAATCACTTCCCCTGCCTTAACTCAGCTGACTATCCAA


 


GCGCTTTACAATCTAGCTGGTGGTAATATGGATTACTTGCTGACTAAGTTAGGTGTAGG


 


GAACAACCAACTCAGCTCATTAATTGGTAGCGGCTTGATCACCGGCAACCCTATTCTGT


 


ACGACTCACAGACTCAGATCTTGGGTATACAGGTAACTTTGCCTTCAGTTGGGAACCTG


 


AATAATATGCGTGCCACCTACCTGGAGACCTTATCTGTAAGCACAACCAAGGGATTTGC


 


CTCAGCACTTGTCCCAAAAGTGGTGACACAGGTCGGTTCCGTGATAGAAGAACTTGACA


 


CCTCATACTGTATAGGGACCGACTTGGATTTATACTGTACAAGAATAGTGACATTCCCT


 


ATGTCTCCTGGTATTTATTCTTGTCTGAGCGGTAATACATCGGCTTGCATGTATTCAAA


 


GACTGAAGGCGCACTTACTACGCCATATATGGCTCTCAAAGGCTCAGTTATTGCCAATT


 


GCAAGCTGACAACATGTAGATGTGCAGATCCCCCAGGTATCATATCGCAAAATTATGGA


 


GAAGCTGTGTCCTTAATAGATAGGCACTCATGCAACGTCTTATCCTTAGACGGGATAAC


 


TCTGAGGCTCAGTGGGGAATTTGATGCAACCTATCAAAAGAATATCTCTATACTAGATT


 


CTCAAGTTATAGTGACAGGCAATCTTGATATATCAACTGAGCTTGGGAATGTCAACAAC


 


TCAATAAGTAATGCCCTGAATAAGTTAGAGGAAAGCAACAGCAAACTAGACAAAGTCAA


 


TGTCAAACTGACCAGCACATCTGCTCTCATTACCTACATCGTTTTAACTGTCATATCTC


 


TTGTTTTTGGTGTACTTAGCCTGGTTCTAGCATGCTACCTGATGTACAAGCAAAAGGCA


 


CAACAAAAGACCTTGTTATGGCTTGGGAATAATACCCTTGATCAGATGAGAGCCACTAC


 


AAAAATATGA


 


The amino acid sequence of the cloned NDV Texas F gene (wild type non-


modified; cleavage site underlined)


(SEQ ID NO: 50)



MGSRSSTRIPVPLMLIIRTALTLSCIRLTSSLDGRPLAAAGIVVTGDKAVNIYTSSQTG



 


SIIVKLLPNMPKDKEVCAKAPLEAYNRTLTTLLTPLGDSIRRIQESVTTSGGRRQRRFI


 


GAIIGSVALGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTDGLSQLAV


 


AVGKMQQFVNDQFNNTAQELDCIKIAQQVGVELNLYLTELTTVFGPQITSPALTQLTIQ


 


ALYNLAGGNMDYLLTKLGVGNNQLSSLIGSGLITGNPILYDSQTQILGIQVTLPSVGNL


 


NNMRATYLETLSVSTTKGFASALVPKVVTQVGSVIEELDTSYCIGTDLDLYCTRIVTFP


 


MSPGIYSCLSGNTSACMYSKTEGALTTPYMALKGSVIANCKLTTCRCADPPGIISQNYG


 


EAVSLIDRHSCNVLSLDGITLRLSGEFDATYQKNISILDSQVIVTGNLDISTELGNVNN


 


SISNALNKLEESNSKLDKVNVKLTSTSALITYIVLTVISLVFGVLSLVLACYLMYKQKA


 


QQKTLLWLGNNTLDQMRATTKI


 


NDV-F YZCQ wildtype DNA sequence


(SEQ ID NO: 51)



atgggctccagatcttctaccaggatcccggtacctctaatgctgatcatccgaaccgc



 


gctgacactgagctgtatccgtctgacaagctctcttgatggcaggcctcttgcggctg


 


cagggatcgtggtaacaggagataaagcagtcaacatatacacctcatcccagacaggg


 


tcaatcatagttaagttactcccgaatatgcccaaggacaaagaggtgtgtgcaaaagc


 


cccattggaggcatacaacaggacactgactactttactcaccccccttggtgattcta


 


tccgcaggatacaagagtctgtgactacttccggaggaggcaagcaaggccgcctgata


 


ggtgccattatcggcagtgtagctcttggggttgcgacagctgcacagataacagcagc


 


ttcggccctgatacaagccaaccagaatgctgccaacatcctccggcttaaagagagca


 


ttgctgcaaccaatgaagctgtgcacgaggtcactgacggattatcacaactagcagtg


 


gcagtagggaagatgcaacagtttgtcaatgaccagttcaataatacagcgcaagaatt


 


ggactgtataaaaattgcacagcaggtcggtgtagaactcaacttgtacctaactgaat


 


tgactacagtatttgggccacaaatcacttcccctgccttaactcagctgactatccaa


 


gcgctttacaatctagctggtggtaatatggattacttgctgactaagttaggtgtagg


 


gaacaaccaactcagctcattaattggtagcggcttgatcaccggcaaccctattctgt


 


acgactcacagactcagatcttgggtatacaggtaactttgccttcagttgggaacctg


 


aataatatgcgtgccacctacctggagaccttatctgtaagcacaaccaagggatttgc


 


ctcagcacttgtcccaaaagtggtgacacaggtcggttccgtgatagaagaacttgaca


 


cctcatactgtatagggaccgacttggatttatactgtacaagaatagtgacattccct


 


atgtctcctggtatttattcttgtctgagcggtaatacatcggcttgcatgtattcaaa


 


gactgaaggcgcacttactacgccatatatggctctcaaaggctcagttattgccaatt


 


gcaagctgacaacatgtagatgtgcagatcccccaggtatcatatcgcaaaattatgga


 


gaagctgtgtccttaatagataggcactcatgcaacgtcttatccttagacgggataac


 


tctgaggctcagtggggaatttgatgcaacctatcaaaagaatatctctatactagatt


 


ctcaagttatagtgacaggcaatcttgatatatcaactgagcttgggaatgtcaacaac


 


tcaataagtaatgccctgaataagttagaggaaagcaacagcaaactagacaaagtcaa


 


tgtcaaactgaccagcacatctgctctcattacctacatcgttttaactgtcatatctc


 


ttgtttttggtgtacttagcctggttctagcatgctacctgatgtacaagcaaaaggca


 


caacaaaagaccttgttatggcttgggaataatacccttgatcagatgagagccactac


 


aaaaatatga


 


NDV-F protein from wildtype YZCQ strain (Amino Acid Sequence of NDV-F of


Texas strain with lentogenic cleavage site sequence)


(SEQ ID NO: 52)



mgsrsstripvplmliirtaltlscirltssldgrplaaagivvtgdkavnlytssqtg



 


siivkllpnmpkdkevcakapleaynrtlttlltplgdsirriqesvttsgggkqgrli


 


gaiigsvalgvataaqitaasaliqanqnaanilrlkesiaatneavhevtdglsqlav


 


avgkmqqfvndqfnntaqeldciklaqqvgvelnlyltelttvfgpqitspaltqltiq


 


alynlaggnmdylltklgvgnnqlssligsglitgnpilydsqtqilgiqvtlpsvgnl


 


nnmratyletlsysttkgfasalvpkvvtqvgsvieeldtsycigtdldlyctrivtfp


 


mspgiysclsgntsacmysktegalttpymalkgsviancklttcrcadppgiisqnyg


 


eavslidrhscnvlsldgitlrlsgefdatyqknisildsqvivtgnldistelgnvnn


 


sisnalnkleesnskldkvnvkltstsalityivltvislvfgvlslvlacylmykqka


 


qqktllwlgnntldqmrattki*


 


NDV-F Texas wildtype DNA sequence


(SEQ ID NO: 53)



atgggctctaaaccttctaccaggatcccagcacctctgatgctgatcacccggattat



 


gctgatattggactgtatccgtccgacaagctctcttgacggcaggcctcttgcagctg


 


caggaattgtagtaacaggagataaggcagtcaatgtatatacctcgtctcagacaggg


 


tcaatcatagtcaagttgctcccgaatatgcccaaggataaggaggcgtgtgcgaaaga


 


cccattagaggcatataacagaacactgactactttgctcactcctcttggcgaatcca


 


tccgcaagatccaagggtctgtgtccacgtctggaggaggcaagcaaggccgcctgata


 


ggtgctgttattggtagtgtagctcttggggttgcaacagcggcacaaataacagcagc


 


tgcggccctaatacaagccaaccagaatgctgccaacatccttcggcttaaggagagca


 


ttgctgcaaccaatgaagctgtgcatgaagtcaccgacggattatcacaactatcagtg


 


gcagttgggaagatgcagcagtttgtcaatgaccagtttaataatacagcgcgagaatt


 


ggactgtataaaaatcacacaacaggttggtgtagaactcaacctatacctaactgaat


 


tgactacagtattcgggccacagatcacctcccctgcattaactcagctgaccatccag


 


gcactttataatttagctggtggcaatatggattacttattaactaagttaggtatagg


 


gaacaatcaactcagctcattaattggcagcggcctgatcactggttaccctatattgt


 


atgactcacagactcaactcttgggcatacaagtgaatttgccctcagtcgggaactta


 


aataatatgcgtgccacctatttagagaccttatctgtaagtacagccaaaggatatgc


 


ctcagcacttgttccaaaagtagtgacacaagtcggttctgtgatagaagagcttgaca


 


cctcatactgtatagagtccgatctggatttatattgtactagaatagtgacattcccc


 


atgtccccaggtatttattcctgtttaagcggcaacacatcagcttgcatgtattcaaa


 


gactgaaggcgcactcactacgccgtatatggcccttaaaggctcagttattgccaatt


 


gtaagataacaacatgtagatgtacagaccctcctggtatcatatcgcaaaattatgga


 


gaagctgtatccctgatagatagacattcgtgcaatgtcttatcattagacgggataac


 


tctgaggctcagtggagaatttgatgcaacttatcaaaagaacatctcaatactagatt


 


ctcaagtcatcgtgacaggcaatcttgatatatcaactgaacttggaaacgtcaacaat


 


tcaatcagcaatgccttggataagttggcaaaaagcaacagcaagctagaaaaagtcaa


 


tgtcagactaaccagcacatccgctctcattacctatattgttctgactgtcatttctc


 


tagttttcggtgcactaagtctgggtttaacatgttacctgatgtacaaacaaaaggca


 


caacaaaagaccttgctatggcttgggaataataccctcgatcagatgagagccactac


 


aagagcatga


 


NDV-F protein from wildtype Texas strain (Amino Acid Sequence of NDV-F VIId


wt YZCQ with lentogenic cleavage site sequence)


(SEQ ID NO: 54)



mgskpstripaplmlitrimlildcirptssldgrplaaagivvtgdkavnvytssqtg



 


siivkllpnmpkdkeacakdpleaynrtlttlltplgesirkiqgsvstsgggkqgrli


 


gavigsvalgvataaqitaaaaliqanqnaanilrlkesiaatneavhevtdglsqlsv


 


avgkmqqfvndqfnntareldcikitqqvgvelnlyltelttvfgpqitspaltqltiq


 


alynlaggnmdylltklgignnqlssligsglitgypilydsqtqllgiqvnlpsvgnl


 


nnmratyletlsystakgyasalvpkvvtqvgsvieeldtsyclesdldlyctrivtfp


 


mspgiysclsgntsacmysktegalttpymalkgsvianckittcrctdppgiisqnyg


 


eavslidrhscnvlsldgitlrlsgefdatyqknisildsqvivtgnldistelgnvnn


 


sisnaldklaksnsklekvnvrltstsalityivltvislvfgalslgltcylmykqka


 


qqktllwlgnntldqmrattra*


 


MDV gB promoter


(SEQ ID NO: 55)



CGATGTTTAGTCACGATAGACATCGGTTCGCCCAGCCGTCGAATACAGCATTATATTTT



 


AGTGTTGAAAATGTAGGGCTGCTTCCTCACTTAAAGGAGGAAATGGCTCGATTCATGTT


 


TCATAGCAGTAGAAAAACAGATTGGACCGTCAGTAAGTTTAGAGGGTTTTATGACTTTA


 


GCACTATAGATAATGTAACTGCGGCCCATCGCATGGCTTGGAAATATATCAAAGAACTG


 


ATTTTTGCAACAGCTTTATTTTCTTCTGTATTTAAATGTGGCGAATTGCACATCTGTCG


 


TGCCGACAGTTTGCAGATCAACAGCAATGGAGACTATGTATGGAAAAATGGAATATATA


 


TAACATATGAAACCGAATATCCACTTATAATGATTCTGGGGTCAGAATCAAGCACTTCA


 


GAAACGCAAAATATGACTGCAATTATTGATACAGATGTTTTTTCGTTGCTTTATTCTAT


 


TTTGCAGTATATGGCCCCCGTTACGGCAGATCAGGTGCGAGTAGAACAGATTACCAACA


 


GCCACGCCCCCATCTGACCCGTCCAATATTCTTGTGTCCCTGCATTTTATCTCACACAA


 


TTTATGAACAGCATCATTAAGATCATCTCACT


 


IBDV DNA encoding VP2 protein of IBDV E strain


(SEQ ID NO: 58)



Atgacaaacctgcaagatcaaacccaacagattgttccgttcatacggagccttctgat



 


gccaacaaccggaccggcgtccattccggacgacaccctggagaagcacactctcaggt


 


cagagacctcgacctacaatttgactgtgggggacacagggtcagggctaattgtcttt


 


ttccctggattccctggctcaattgtgggtgctcactacacactgcagagcaatgggaa


 


ctacaagttcgatcagatgctcctgactgcccagaacctaccggccagctacaactact


 


gcaggctagtgagtcggagtctcacagtaaggtcaagcacactccctggtggcgtttat


 


gcactaaacggcaccataaacgccgtgaccttccaaggaagcctgagtgaactgacaga


 


tgttagctacaacgggttgatgtctgcaacagccaacatcaacgacaaaattgggaacg


 


tcctagtaggggaaggggtaaccgtcctcagcttacccacatcatatgatcttgggtat


 


gtgaggcttggtgaccccatacccgctatagggcttgacccaaaaatggtagcaacatg


 


tgacagcagtgacaggcccagagtctacaccataactgcagccgataattaccaattct


 


catcacagtaccaaacaggtggggtaacaatcacactgttctcagccaacattgatgcc


 


atcacaagtctcagcgttgggggagagctcgtgttcaaaacaagcgtccaaagccttgt


 


actgggcgccaccatctaccttataggctttgatgggactgcggtaatcaccagagctg


 


tggccgcaaacaatgggctgacggccggcatcgacaatcttatgccattcaatcttgtg


 


attccaaccaatgagataacccagccaatcacatccatcaaactggagatagtgacctc


 


caaaagtgatggtcaggcaggggaacagatgtcatggtcggcaagtgggagcctagcag


 


tgacgatccatggtggcaactatccaggagccctccgtcccgtcacactagtggcctac


 


gaaagagtggcaacaggatctgtcgttacggtcgctggggtgagcaacttcgagctgat


 


cccaaatcctgaactagcaaagaacctggttacagaatatggccgatttgacccaggag


 


ccatgaactacacgaaattgatactgagtgagagggaccgccttggcatcaagaccgtc


 


tggccaacaagggagtacactgactttcgtgagtacttcatggaggtggccgacctcaa


 


ctctcccctgaagattgcaggagcatttggcttcaaagacataatccgggccataagga


 


ggtga


 


IBDV VP2 protein of IBDV E strain


(SEQ ID NO: 59)



mtnlqdqtqqivpfirsllmpttgpasipddtlekhtlrsetstynltvgdtgsglivf



 


fpgfpgsivgahytlqsngnykfdqmlltaqnlpasynycrlvsrsltvrsstlpggvy


 


alngtinavtfqgslseltdvsynglmsatanindkignylvgegvtvlslptsydlgy


 


vrlgdpipaigldpkmvatcdssdrprvytitaadnyqfssqyqtggvtitlfsanida


 


itslsvggelvfktsvqslvlgatlyligfdgtavitravaanngltagidnlmpfnlv


 


iptneitqpitsikleivtsksdgqageqmswsasgslavtihggnypgalrpvtlvay


 


ervatgsvvtvagvsnfelipnpelaknlyteygrfdpgamnytklilserdrlgiktv


 


wptreytdfreyfmevadlnsplkiagafgfkdiirairr*


 


Guinea pig CMV promoter


(SEQ ID NO: 60)



ttagtcatatgttacttggcagaggccgcatggaaagtccctggacgtgggacatctga



 


ttaatacgtgaggaggtcagccatgttctttttggcaaaggactacggtcattggacgt


 


ttgattggcatgggatagggtcagccagagttaacagtgttcttttggcaaagggatac


 


gtggaaagtcccgggccatttacagtaaactgatacggggacaaagcacagccatattt


 


agtcatgtattgcttggcagagggtctatggaaagtccctggacgtgggacgtctgatt


 


aatatgaaagaaggtcagccagaggtagctgtgtcctttttggcaaagggatacggtta


 


tgggacgtttgattggactgggatagggtcagccagagttaacagtgttcttttggcaa


 


aggaaacgtggaaagtcccgggccatttacagtaaactgatactgggacaaagtacacc


 


catatttagtcatgttctttttggcaaagagcatctggaaagtcccgggcagcattata


 


gtcacttggcagagggaaagggtcactcagagttaagtacatctttccagggccaatat


 


tccagtaaattacacttagttttatgcaaatcagccacaaaggggattttcccggtcaa


 


ttatgactttttccttagtcatgcggtatccaattactgccaaattggcagtacatact


 


aggtgattcactgacatttggccgtcctctggaaagtccctggaaaccgctcaagtact


 


gtatcatggtgactttgcatttttggagagcacgccccactccaccattggtccacgta


 


ccctatgggggagtggtttatgagtatataaggggctccggtttagaagccgggcaga






Locus positions of SEQ ID NO:14 (GenBank Accession No. HQ840738.1, Gallid herpesvirus 3 strain SB-1, complete genome)

117554 . . . 118057 UL55 gene; product=“UL55 protein”; protein id=“AEI00266.1”

Complement (118306 . . . 120927) LORF5 gene; product=“ORF996 protein”; protein id=“AEI00267.1”

98595 . . . 100031 UL44 gene; product=“glycoprotein C”; protein id=“AEI00252.1”

25078 . . . 25983 UL7 gene; product=“UL-7 like protein”; protein id=“AEI00208.1”

Complement (26038 . . . 28332) UL8 gene; product=“UL-8 like protein”; protein id=“AEI00209.1”

48267 . . . 49865 UL21 gene; product=“UL-21 like protein”; protein id=“AEI00223.1”

Complement (50033 . . . 52549) UL22 gene; product=“UL-22 like protein”; protein id=“AEI00225.1”

75497 . . . 75880 UL35 gene; product=“UL-35 protein”; protein id=“AEI00241.1”

Complement (75498 . . . 85154) UL36 gene; product=“UL-36 protein”; protein id=“AEI00242.1”

92867 . . . 93928 UL40 gene; product=“UL-40 protein”; protein id=“AEI00248.1”

Complement (93990 . . . 95261) UL41 gene; product=“UL-41 protein”; protein id=“AEI00249.1”

108470 . . . 109777 UL50 gene; product=“UL-50 protein”; protein id=“AEI00260.1”

Complement (109847 . . . 110593) UL51 gene; product=“UL-51 protein”; protein id=“AEI00261.1”

115036 . . . 116466 UL54 gene; product=“UL-54 protein”; protein id=“AEI00264.1”

Complement (116571 . . . 117377) LORF4 gene; product=“LORF4 protein”; protein id=“AEI00265.1”

145853 . . . 146548 US10 gene; product=“US10 protein”; protein id=“AEI00292.1”

Complement (146697 . . . 147665) SORF4 gene; product=“SORF4 protein”; protein id=“AEI00294.1”

97141 . . . 98385 UL43 gene; product=“UL43 protein”; protein id=“AEI00251.1”

Complement (147857 . . . 148672) US2 gene; product=“US2 protein”; protein id=“AEI00297.1”

150322 . . . 151479 US6 gene; product=“glycoprotein D”; protein id=“AEI00299.1”

Having thus described in detail preferred embodiments of the present invention, it is to be understood that the invention defined by the above examples is not to be limited to particular details set forth in the above description as many apparent variations thereof are possible without departing from the spirit or scope of the present invention.
All documents cited or referenced herein (“herein cited documents”), and all documents cited or referenced in herein cited documents, together with any manufacturer's instructions, descriptions, product specifications, and product sheets for any products mentioned herein or in any document incorporated by reference herein, are hereby incorporated herein by reference, and may be employed in the practice of the invention.

## Claims

1. A vaccine composition comprising:
1) a recombinant Gallid herpesvirus 3 (MDV-2) strain SB-1 vector, wherein said vector comprises a heterologous polynucleotide coding for and expressing in vivo, a Newcastle Disease Virus (NDV) Fusion protein (NDV-F), and
2) a pharmaceutically or veterinarily acceptable carrier, excipient, vehicle or adjuvant;
wherein the NDV-F protein has at least 99% sequence identity to a polypeptide having the sequence as set forth in SEQ ID NO:2 or wherein the NDV-F protein comprises SEQ ID NO:9.

2. A vaccine composition comprising:
1) a recombinant Gallid herpesvirus 3 (MDV-2) strain SB-1 vector, wherein said vector comprises a heterologous polynucleotide coding for and expressing in vivo, an NDV Fusion protein (NDV-F),
2) a recombinant Herpesvirus of Turkeys (HVT) vector, wherein HVT is also known as MDV-3 or Meleagrid herpesvirus 1, wherein the vector comprises a heterologous polynucleotide coding for and expressing in vivo, an Infectious bursal disease virus (IBDV) VP2, and
3) a pharmaceutically or veterinarily acceptable carrier, excipient, vehicle or adjuvant.

3. The vaccine composition of claim 1 or 2, wherein the heterologous polynucleotide coding for NDV-F is inserted into the region between ORF UL55 and ORF LORF5 in the unique long (UL) region of the recombinant MDV-2 strain SB-1 vector.

4. The vaccine composition of claim 1 or 2, wherein the recombinant MDV-2 strain SB-1 vector comprises a heterologous promoter, and expression of NDV-F is under the control of said promoter, wherein said promoter is selected from an immediate early CMV promoter, a mouse CMV promoter, a guinea pig CMV promoter, an SV40 promoter, a Pseudorabies Virus glycoprotein X promoter, a Herpes Simplex Virus-1 alpha 4 promoter, a Marek's Disease Virus glycoprotein C promoter, a Marek's Disease Virus glycoprotein B promoter, a Marek's Disease Virus glycoprotein E promoter, an Infectious Laryngotracheitis Virus glycoprotein B, an Infectious Laryngotracheitis Virus glycoprotein E promoter, an Infectious Laryngotracheitis Virus glycoprotein D promoter, an Infectious Laryngotracheitis Virus glycoprotein I promoter, or a Bovine Herpesvirus 1.1 VP8 promoter.

5. The vaccine composition of claim 2, wherein the NDV-F protein has at least 95% sequence identity to a polypeptide having the sequence as set forth in SEQ ID NOs: 2, 5, 7, or 9.

6. The vaccine composition of claim 2, wherein the polynucleotide encoding NDV-F has at least 95% sequence identity to SEQ ID NO: 1, 3, 4, 6, or 8.

7. The vaccine composition of claim 4, wherein the heterologous promoter comprises a mouse CMV promoter, a SV40 promoter, or a guinea pig CMV promoter.

8. The vaccine composition of claim 1 or 2, wherein the heterologous polynucleotide coding for NDV-F is in the region between ORF SORF4 and ORF US10 of the recombinant MDV-2 strain SB-1 vector.

9. The vaccine composition of claim 1 or 2, wherein heterologous polynucleotide coding for NDV-F is in the region between ORF SORF4 and ORF US2 of the recombinant MDV-2 strain SB-1 vector.

10. The vaccine composition of claim 1 or 2, wherein heterologous polynucleotide coding for NDV-F is in the region coding for glycoprotein C (UL44) of the recombinant MDV-2 strain SB-1 vector.