# Patent

## Title
Covalent complex of von Willebrand Factor and factor VIII, compositions, and uses relating thereto

## Abstract

The present invention relates to a covalent complex of von Willebrand Factor (VWF) and Factor VIII, wherein the complex is modified such that it has an extended half-life in vivo. The invention further relates to a method of producing the complex, as well as the therapeutic or prophylactic use of the complex for treating or preventing bleeding events.

## Background
This application is the U.S. national stage entry under 35 U.S.C. §371 of International Application No. PCT/EP2014/058093, filed on Apr. 22, 2014 and published as WO 2014/173873 A1, which claims priority to European Patent Application No. 13164728.1, filed on Apr. 22, 2013. The contents of these applications are each incorporated herein by reference in their entirety.
The present invention relates to a covalent complex of von Willebrand Factor or variants thereof (VWF) and Factor VIII or variants thereof (Factor VIII), wherein the complex is modified such that it has an extended half-life in vivo. The invention further relates to a method of producing the complex, as well as the therapeutic or prophylactic use of the complex for treating or preventing bleeding events.
There are various bleeding disorders caused by deficiencies of blood coagulation factors. The most common disorders are hemophilia A and B, resulting from deficiencies of blood coagulation factor VIII and IX, respectively. Another known bleeding disorder is von Willebrand disease.
In plasma factor VIII (FVIII) exists mostly as a noncovalent complex with von Willebrand Factor. Mature FVIII, a polypeptide of up to 2332 amino acids after pro-peptide cleavage, is composed of several domains as depicted in FIGS. 1A-1C. FVIII's function in coagulation is to accelerate factor IXa-dependent conversion of factor X to Xa. Due to the complex formation of FVIII and von Willebrand Factor it was assumed for a long time that FVIII and von Willebrand Factor functions are two functions of the same molecule. Only in the seventies it became clear that FVIII and von Willebrand Factor are separate molecules that form a complex under physiologic conditions. In the eighties, a dissociation constant of FVIII and von Willebrand Factor of about 0.2 nmol/L was determined (Leyte et al., Biochem J 1989, 257: 679-683) and the DNA sequence of both molecules was determined.
Classic hemophilia or hemophilia A is an inherited bleeding disorder. It results from a chromosome X-linked deficiency of blood coagulation FVIII, and affects almost exclusively males with an incidence of between one and two individuals per 10,000. The X-chromosome defect is transmitted by female carriers who are not themselves hemophiliacs. The clinical manifestation of hemophilia A is an increased bleeding tendency. Prior to the introduction of treatment with FVIII concentrates, the mean life span for a person with severe hemophilia was less than 20 years. The use of concentrates of FVIII from plasma has considerably improved the situation for the hemophilia A patients, increasing the mean life span extensively, giving most of them the possibility to live a more or less normal life. However, there have been certain problems with the plasma derived concentrates and their use, the most serious of which have been the transmission of viruses such as viruses causing hepatitis B, non-A non-B hepatitis and HIV. However, different virus inactivation methods and new highly purified FVIII concentrates have recently been developed which established a very high safety standard for plasma-derived FVIII.
In severe hemophilia A patients undergoing prophylactic treatment FVIII has to be administered intravenously (i.v.) about 3 times per week due to the short plasma half-life of FVIII of about 12 hours. Each i.v. administration is cumbersome, associated with pain, and entails the risk of an infection, especially as this is mostly done at home by the patients themselves or by the parents of children being diagnosed with hemophilia A.
It would thus be highly desirable to create a FVIII with increased functional half-life allowing the manufacturing of pharmaceutical compositions containing FVIII, which have to be administered less frequently.
Several attempts have been made to prolong the functional half-life of FVIII either by reducing its interaction with cellular receptors (WO 03/093313A2, WO 02/060951A2), by covalently attaching polymers to FVIII (WO 94/15625, WO 97/11957 and U.S. Pat. No. 4,970,300), by encapsulation of FVIII (WO 99/55306), by the introduction of novel metal binding sites (WO 97/03193), by covalently attaching the A2 domain to the A3 domain either by peptidic (WO 97/40145 and WO 03/087355) or disulfide linkage (WO 02/103024A2) or by introducing mutations that prevent thrombin cleavage between the A1 and A2 domains and therefore keep the A1 domain covalently attached to the A2 domain after thrombin activation (WO2006/108590).
Another approach to enhance the functional half-life of FVIII or von Willebrand Factor is by PEGylation of FVIII (WO 2007/126808, WO 2006/053299, WO 2004/075923) or by PEGylation of von Willebrand Factor (WO 2006/071801), with the idea that pegylated von Willebrand Factor, by having an increased half-life, would indirectly also enhance the half-life of FVIII present in plasma. In addition fusion proteins of FVIII with half-life enhancing polypeptides like albumin or the constant region Fc of immunoglobulins have been described (WO 2004/101740, WO2008/077616 and WO 2009/156137).
Von Willebrand Factor, which is missing, functionally defect or only available in reduced quantity in different forms of von Willebrand disease (VWD), is a multimeric adhesive glycoprotein present in the plasma of mammals, which has multiple physiological functions. During primary hemostasis von Willebrand Factor acts as a mediator between specific receptors on the platelet surface and components of the extracellular matrix such as collagen. Moreover, von Willebrand Factor serves as a carrier and stabilizing protein for procoagulant FVIII. Von Willebrand Factor is synthesized in endothelial cells and megakaryocytes as a 2813 amino acid precursor molecule. The amino acid sequence and the cDNA sequence of wild-type VWF are disclosed in Collins et al. 1987, Proc Natl. Acad. Sci. USA 84:4393-4397. The precursor polypeptide, pre-pro-von Willebrand Factor, consists of a 22-residue signal peptide, a 741-residue pro-peptide and the 2050-residue polypeptide found in mature plasma von Willebrand Factor (Fischer et al., FEBS Lett. 351: 345-348, 1994), see also FIG. 2A for pro-von Willebrand Factor and FIG. 2B for mature von Willebrand Factor monomer unit. After cleavage of the signal peptide in the endoplasmatic reticulum a C-terminal disulfide bridge is formed between two monomers of von Willebrand Factor. During further transport through the secretory pathway 12 N-linked and 10 O-linked carbohydrate side chains are added. More importantly, von Willebrand Factor dimers are multimerized via N-terminal disulfide bridges and the propeptide of 741 amino acids length is cleaved off by the enzyme PACE/furin in the late Golgi apparatus. The propeptide as well as the high-molecular-weight multimers of von Willebrand Factor (VWF-HMWM) are stored in the Weibel-Pallade bodies of endothelial cells or in the α-Granules of platelets.
Once secreted into plasma the protease ADAMTS13 cleaves ultra-large von Willebrand Factor multimers within the A2 domain of von Willebrand Factor. Plasma von Willebrand Factor consists of a whole range of multimers ranging from single dimers of approx. 500 kDa to multimers consisting of up to or even more than 20 dimers of a molecular weight of over 10,000 kDa. The VWF-HMWM have the strongest hemostatic activity, which can be measured by a ristocetin cofactor activity assay (VWF:RCo). The higher the ratio of VWF:RCo/von Willebrand Factor antigen, the higher the relative amount of high molecular weight multimers.
Defects in von Willebrand Factor are the cause of von Willebrand disease (VWD), which is characterized by a more or less pronounced bleeding phenotype. VWD type 3 is the most severe form in which von Willebrand Factor is essentially completely missing, VWD type 1 relates to a reduced level of von Willebrand Factor and its phenotype can be very mild. VWD type 2 relates to qualitative defects of von Willebrand Factor and can be as severe as VWD type 3. VWD type 2 has many sub-forms, some of them being associated with the loss or the decrease of high molecular weight multimers. VWD type 2A is characterized by a loss of both intermediate and large multimers, and is therefore characterised by qualitatively defective VWF with a decreased ability to bind platelet glycoprotein 1 receptor. VWD type 2B is characterized by a loss of highest-molecular-weight multimers. The ability of the qualitatively defective VWF to bind to glycoprotein 1 receptor on the platelet membrane is abnormally enhanced, leading to its spontaneous binding to platelets and subsequent clearance of the bound platelets and of the large von Willebrand Factor multimers. VWD type 2M is also a qualitative defect in von Willebrand Factor characterized by its decreased ability to bind to glycoprotein 1 receptor on the platelet membrane, but a normal multimer distribution, as are von Willebrand Factor antigen levels. VWD type 2N (Normandy) is a qualitative defect in von Willebrand Factor, where there is a deficiency of von Willebrand Factor binding to coagulation factor FVIII. Although the quantity of von Willebrand Factor and von Willebrand Factor multimers is normal, patients show a decreased level in FVIII, leading to a similar phenotype as haemophilia A.
VWD is the most frequent inherited bleeding disorder in humans and can be—depending on the type of VWD—treated by therapy with 1-Desamino-8-D-Arginin-Vasopressin (DDAVP) to release von Willebrand Factor from intra-cellular storage pools or by replacement therapy with concentrates containing von Willebrand Factor of plasmatic or recombinant origin. Von Willebrand Factor can be prepared from human plasma as for example described in EP 0503991. EP 0784632 describes a method for isolating recombinant von Willebrand Factor.
In plasma FVIII binds with high affinity to von Willebrand Factor, which protects it from premature catabolism and thus plays, in addition to its role in primary hemostasis, a crucial role in the regulation of plasma levels of FVIII. As a consequence von Willebrand Factor is also a central factor in the control of secondary hemostasis. The half-life of non-activated FVIII bound to von Willebrand Factor in plasma is about 12 hours. In VWD type 3, where no or almost no von Willebrand Factor is present, the half-life of FVIII is only about 2 hours, leading to symptoms of mild to moderate hemophilia A in such patients due to decreased concentrations of FVIII.
The stabilizing effect of von Willebrand Factor on FVIII has also been used to aid recombinant expression of FVIII in CHO cells (Kaufman et al. 1989, Mol Cell Biol). Other recent attempts to use von Willebrand Factor for stabilizing FVIII have been disclosed in several recent patent applications (WO2011060242, WO2013083858, WO2013106787, WO2014011819).
There is still a need for further, better approaches to increase the half-life of FVIII. It has been found by the inventors of this application that a covalent attachment of a FVIII molecule to a half-life extended von Willebrand Factor molecule will provide a half-life extension to the FVIII moiety such that its half-life will be similar to that of the unfused half-life extended von Willebrand Factor molecule. With this method an about 3-fold half-life extension was seen in a rat PK model over free FVIII. The present invention provides a covalent complex of von Willebrand Factor or variants thereof (VWF) and Factor VIII, in particular using methods to increase the half-life of the VWF-component in the complex, which allows the provision of stable complexes having a prolonged half-life which are advantageous in therapy and prophylaxis of bleeding disorders.
SUMMARY OF THE INVENTION
In a first aspect the present invention relates to a covalent complex comprising von Willebrand factor or variants thereof (VWF) and Factor VIII (FVIII) or variants thereof (Factor VIII), wherein the complex is modified such that it has an extended half-life in vivo. Preferably it is modified to comprise a half-life extending moiety. The VWF and the Factor VIII form a covalent complex; attached to any part of this complex, preferably to the VWF moiety, is a half-life extending moiety. Preferably, the VWF and the Factor VIII are linked by a direct covalent bond, e.g. via a disulphide bridge of a cysteine that is part of the VWF with a cysteine that is part of the Factor VIII, or by fusing VWF with Factor VIII, optionally via a peptide linker, with the proviso that the covalent complex is not an Fc fusion protein, where one of the Fc chains is fused to VWF and the other Fc chain is fused to FVIII or variants thereof. Preferably, the covalent link is not provided by the half-life extending moiety.
In a first embodiment, Factor VIII is modified so that it forms a disulphide bridge with VWF (with the proviso that the disulphide bridge is not between the two chains of an Fc molecule that are fused to VWF and Factor VIII respectively). Preferably, Factor VIII is modified by substitution of a naturally occurring amino acid with a cysteine residue or by insertion of a cysteine residue that forms a disulphide bridge with a cysteine residue in VWF. Preferably, the naturally occurring amino acid that is substituted in Factor VIII is selected from an amino acid in the a3 domain, or a cysteine residue is inserted into the a3 domain (residues 1649 to 1689 of SEQ ID No. 6). More preferably, the naturally occurring amino acid is an acidic residue, preferably a conserved acidic residue, or a residue involved in a hemophilic phenotype, or a Tyr residue which may be sulphated in the FVIII a3 domain. More preferably, the naturally occurring amino acid that is substituted in Factor VIII is located within amino acids 1653 to 1660 or within amino acids 1667 to 1674 or within amino acids 1675 to 1688 of the Factor VIII a3 domain or a cysteine is introduced into the sequence of amino acids 1653 to 1660 or amino acids 1667 to 1674 or amino acids 1675 to 1688 of the Factor VIII a3 domain. Even more preferably, the naturally occurring amino acid in the Factor VIII a3 domain that is substituted with cysteine is selected from T1653, L1655, D1658, E1660, S1669, V1670, N1672, K1673, K1674, E1675, D1676 and/or N1685, in SEQ ID NO: 6 or equivalent position in a genetically engineered form of Factor VIII. Most preferably, the naturally occurring amino acid in the a3 domain that is substituted with cysteine is selected from T1654, Q1656, F1677, D1678, I1679, Y1680, D1681, E1682, D1683, E1684, Q1686, S1687 and/or P1688 in SEQ ID NO: 6 or equivalent position in a genetically engineered form of Factor VIII.
In another embodiment, a cysteine residue is inserted in the C-terminal domain, or the naturally occurring amino acid that is substituted with cysteine is in the C-terminal domain of Factor VIII, preferably the residue is selected from I2098, S2119, N2129, R2150, P2153, W2229, Q2246 in SEQ ID NO: 6 or equivalent position in an engineered form of Factor VIII.
In a further, preferred embodiment of the first aspect of the invention, VWF is also modified by substitution of a naturally occurring amino acid with a cysteine residue or the insertion of a cysteine residue which forms a disulphide bridge with a cysteine residue introduced into Factor VIII. Preferably, a cysteine residue is inserted into the D′ or D3 domain (see FIGS. 2A and 2B), or the naturally occurring amino acid in VWF that is substituted with a cysteine residue is a residue in the D′ or D3 domain or a basic or a highly conserved residue in the D′ or D3 domain or a residue involved in type N-VWD or an amino acid exposed on the surface of the VWF molecule. In a preferred embodiment of the invention a cysteine residue is inserted into the TIL′ domain, the E′ domain, the VWD3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain or the naturally occurring amino acid in VWF that is substituted with a cysteine residue is a residue in the TIL′ domain, the E′ domain, the VWD3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain (all as defined by Zhou et al (2012) Blood 120 (2), 449-458). For example, the naturally occurring amino acid in VWF is selected from K773, G785, E787, A/T789, K790, T791, Q793, N794, M800, R820, R826, F830, H831, K834, E835, P838, K843, R852, R854, K855, W856, H861, H874, K882, L884, R906, K912, H916, K920, K923, R924, K940, R945, K948, H952, R960, K968, R976, H977, K985, K991, K1026, R1035, K1036, K1052, Q1053, K1073 or H1074. Preferably, the naturally occurring amino acid in VWF is selected from Y795, R816, H817, P828, D853, D879, K922, D951, E1078, E1161, and/or R1204 in SEQ ID NO: 2 or equivalent position in an engineered form of VWF. More preferably, the naturally occurring amino acid in VWF is selected from R768, R782, H817, D853, E933, L984, E1015, D1076, E1078, P1079, K1116 and/or N1134 in SEQ ID NO: 2 or equivalent position, e.g. in an engineered form of VWF.
More preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in VWF and FVIII are introduced:
A/T789C:D1658C, M800C:D1658C, P828C:D1658C, F830C:D1658C, P838C:D1658C, D853C:D1658C, R924C:D1658C, E1078C:D1658C, F830C:D1663C, P838C:D1663C, D853C:D1663C, E1078C:D1663C, E1078C:Y1664C, P838C:D1665C, R816C:D1666C, F830C:D1666C, E835C:D1666C, T791C:E1671C, F830C:E1671C, E835C:E1671C, D879C:E1671C, A/T789C:E1675C, T791C:E1675C, N794C:E1675C, P828C:E1675C, F830C:E1675C, E835C:E1675C, P838C:E1675C, D879CE1675C, R924C:E1675C, E1078C:E1675C, A/T789C:D1676C, T791C:D1676C, N794C:D1676C, F830C:D1676C, E835C:D1676C, A/T789C:D1678C, F830C:D1678C, E835C:D1678C, A/T789C:I1679C, M800C:I1679C, F830C:I1679C, E835C:I1679C, R854C:I1679C, D879C:I1679C, A/T789C:Y1680C, T791C:Y1680C, Y795C:Y1680C, M800C:Y1680C, R816C:Y1680C, F830C:Y1680C, E835C:Y1680C, R854C:Y1680C, D879C:Y1680C, A/T789C:E1682C, Y795C:E1682C, R816C:E1682C, P828C:E1682C, E835C:E1682C, P838C:E1682C, R854C:E1682C, D879C:E1682C, Q1053C:E1682C.
Even more preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in VWF and FVIII are introduced:
F1677C:R768C, I1679C:R768C, Y1680C:R768C, N1685C:R768C, T1654C:R782C, E1675C:R782C, N1685C:R782C, Q1686C:Y795C, S1687C:Y795C, P1688C:Y795C, P1688C:Y795C, E1675C:H816C, D1676C:R816C, Y1680C:R816C, E1682C:R816C, P1688C:R816C, Y1680C:H817C, N1685C:H817C, Q1686C:H817C, S1687C:H817C, I1679C:P828C, Y1680C:D853C, N1685C:D853C, T1654C:D879C, P1688C:E933C, P1688:T951C, T1653C:L984C, T1654C:L984C, L1655C:L984C, S1669C:L984C, K1673C:L984C, D1683C:L984C, T1653C:E1015C, L1655C:E1015C, S1669C:E1015C, V1670C:E1015C, N1672C:E1015C, K1673C:E1015C, D1678C:E1015C,I1679C:E1015C, E1684C:E1015C, S1687C:E1015C, F1677C:V1027C,I1679C:V1027C, P1688C:V1027C, S1657C:D1076C, K1673C:D1076C, D1676C:D1076C, F1677C:D1076C,I1679C:D1076C, E1682C:D1076C, D1683C:D1076C, Q1686C:D1076C, D1676C:E1078C, I1679C:E1078C, Y1680C:E1078C, T1653C:P1079C, L1655C:P1079C, S1657C:P1079C, D1658C:P1079C, E1682C:P1079C, V1670C:K1116C, K1673C:K1116C, D1676C:K1116C, D1678C:K1116C, D1681C:K1116C, Q1686C:K1116C, P1688C:K1116C, T1653C:N1134C, L1655C:N1134C, E1660C:N1134C, D1678C:N1134C, D1683C:N1134C, E1684C:N1134C, Q1686C:N1134C, T1653C:E1161C, L1655C:E1161C, K1674C:E1161C, D1676C:E1161C, E1684C:E1161C, S1687C:E1161C, P1688C:R1204C.
Most preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in FVIII and VWF are introduced:
T1654:P1079, T1654:N1134, Q1656:D1076, F1677:K1116, D1678:R782, I1679:K1116, Y1680:H817, Y1680:D853, Y1680:E1078, D1681:R768, E1682:R768, D1683:R768, E1684:R768, Q1686:R768, Q1686:E1015, S1687:R768, S1687:N1134, P1688:R768, P1688:H817, P1688:E933, P1688:L984, P1688:E1015, P1688:D1076 and P1688:N1134.
Preferably, the naturally occurring amino acids of the combination of one or more inserted cysteine residues in VWF and Factor VIII are selected by a relative ratio higher than 0.5 of covalently bound Factor VIII to VWF as experimentally assessed shown in example 6 and activity of Factor VIII as experimentally assessed shown in example 9. Most preferably, the naturally occurring amino acids of the combination of one or more inserted cysteine residues in VWF and Factor VIII are selected by a said ratio of higher than 1.0.
Preferably, the Factor VIII in the complex of the invention is a genetically engineered Factor VIII. The engineered Factor VIII may have a partial or complete B-domain deletion, it may be a mutated Factor VIII comprising one or more amino acid substitutions, insertions, deletions or combinations thereof, or it may be a fusion polypeptide with a half-life extending moiety or a chemically modified Factor VIII e.g. modified by attachment of a half-life extending moiety such as polyethylene glycol (PEGylation), glycosylated PEG, hydroxyl ethyl starch (HESylation), polysialic acids, elastin-like polypeptides, heparosan polymers or hyaluronic acid.
In a preferred embodiment, the VWF in the complex of the invention is a half-life extended form of VWF, preferably it is a genetically engineered form of VWF. More preferably, the genetically engineered VWF is a fusion protein of VWF with a half-life extending moiety. Preferably, the half-life extending moiety is a half-life extending polypeptide (HLEP), more preferably HLEP is selected from albumin or fragments thereof, immunoglobulin constant region and portions thereof, e.g. the Fc fragment, solvated random chains with large hydrodynamic volume (e.g. XTEN (Schellenberger et al. 2009), homo-amino acid repeats (HAP) or proline-alanine-serine repeats (PAS)), afamin, alpha-fetoprotein, Vitamin D binding protein, transferrin or variants thereof, carboxyl-terminal peptide (CTP) of human chorionic gonadotropin-β subunit, polypeptides or lipids capable of binding under physiological conditions to albumin or immunoglobulin constant regions. In another preferred embodiment, the VWF of the complex is expressed as a dimer. In a further preferred embodiment, the VWF of the complex forms multimers.
In another embodiment of the invention, the half-life of the complex of the invention is extended by chemical modification, e.g. attachment of a half-life extending moiety such as polyethylene glycol (PEGylation), glycosylated PEG, hydroxyl ethyl starch (HESylation), polysialic acids, elastin-like polypeptides, heparosan polymers or hyaluronic acid.
A second embodiment of the invention is a covalent complex comprising VWF and Factor VIII, wherein the complex is modified such that it has an extended half-life in vivo, and wherein Factor VIII is modified to comprise one or more VWF domains. Preferably, the extended half-life of the complex is obtained by using a half-life extended form of VWF in the complex.
Preferably, the Factor VIII is fused with one or more of the C-terminal domains of VWF (see FIGS. 4A-4J), preferably the one or more C-terminal domains of VWF are fused to the C-terminus of Factor VIII. Such C-terminal domains of VWF comprise the C-terminal cystine knot (CK) domain of VWF and may additionally comprise, besides C or CK domains, one or more additional domains of VWF, e.g. A or D domains. More preferably, the FVIII comprises, preferably at its C-terminus, residues 2723-2813, 2724-2813, 2722-2813, 2578-2813, 2580-2813, 2497-2813, 2429-2813, 2400-2813, 2334-2813, 2255-2813, 1873-2813, 1683-2813, 1277-2813, 1264-2813 or 764-2813 of SEQ ID NO: 2 or variants thereof, provided that cysteine residue 2773 (or equivalent thereof) is preserved.
Preferably, the C-terminal CK domain of VWF, optionally comprising further VWF domains as disclosed above, is attached to FVIII by a cleavable linker. More preferably, the cleavable linker comprises a cleavage site cleavable by proteases related to blood coagulation, even more preferably, the cleavable linker comprises a thrombin cleavage site, preferably one of the thrombin cleavage sites of FVIII. Preferably, the linker sequence also comprises additional amino acid residues, preferably the additional amino acid residues are inserted between the C-terminal domain(s) of VWF and the cleavable part of the linker. Preferably, the additional amino acid residues provide a peptide of sufficient length to permit the interaction of FVIII and VWF via the a3 region of FVIII and the D′D3 regions of VWF, respectively. The additional amino acid residues may be more than 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120 or 150 amino acids. Preferably the additional amino acid residues form a flexible, “non-structural” peptide, and more preferably comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats, homo-amino acid repeats, or sequences of the FVIII B-domain.
In another embodiment, the Factor VIII is N-terminally fused with one or more of the C-terminal domains of VWF. Such C-terminal domains may be derived from the C-terminal cystine knot (CK) domain of VWF and may additionally comprise one or more further domains of VWF. More preferably, the Factor VIII comprises, preferably at its N-terminus, residues 2723-2813, 2724-2813, 2722-2813, 2580-2813, 2578-2813, 2497-2813, 2429-2813, 2400-2813, 2334-2813, 2255-2813, 1873-2813, 1683-2813, 1277-2813, 1264-2813 or 764-2813 of SEQ ID NO: 2 or variants thereof, provided that cysteine residue 2773 (or equivalent thereof) is preserved. For these embodiments, the expression product would comprise, from N- to C-terminus, a signal peptide, the CK domain of VWF, optionally with additional domains of VWF, preferably a cleavable (optionally flexible) linker, and Factor VIII.
Another embodiment of the invention is a covalent complex comprising VWF and Factor VIII, wherein the VWF is a half-life extended form of VWF, and wherein Factor VIII is modified to comprise the D′D3 or D1D2D′D3 region of VWF, or fragments thereof which maintain at least 10% of the FVIII binding activity of wild-type von Willebrand Factor. Preferably, the Factor VIII is so modified that its partial or complete B-domain is replaced by the VWF D′D3 region or fragments thereof (see FIGS. 5A-5E). More preferably, the Factor VIII comprises, preferably instead of its (or part of its) B domain, residues 764 to 1241, 764 to 1242, 764 to 1247, 764 to 1270 or any sequence between 764 and 1241 to 1270, respectively, of SEQ ID NO: 2 or a variant or a fragment thereof.
In a preferred embodiment, the D′D3 domain of VWF is attached to Factor VIII such that a two-chain molecule is generated upon secretion of the molecule into the cell culture medium and that the D′D3 domain is located at the N-terminus of the Factor VIII light chain. This can be achieved by introducing a cleavable linker comprising, for example, a cleavage site for PACE/furin between the Factor VIII a2 domain or the remainders of the B domain and the VWF D′D3 domain (FIGS. 5D and 5E). Preferably, the linker comprises additional residues between the D′D3 domain of VWF and the Factor VIII a3 domain, the additional residues comprising a peptide of sufficient length to permit the intramolecular interaction of Factor VIII and VWF via the a3 and D′D3 domains, respectively (FIG. 5E). Preferably, the additional residues comprise less than 200 amino acids, more preferably less than 100 amino acids, even more preferably less than 90, 80, 70, 60, 50 amino acids, less than 40 amino acids, less than 30 amino acids, less than 20 amino acids, most preferably less than 10 amino acids. Preferably the additional residues comprise a flexible, “non-structural” peptide, more preferably they comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats or homo-amino acid repeats. The protein to be expressed to obtain the mature form as described may be constructed to include additional sequences, e.g. a signal sequence at the N-terminus.
Alternatively, the N-terminus of Factor VIII is connected to the C-terminus of the VWF D′D3 domains or fragments thereof, which is preferably N-terminally extended by further domains of VWF (e.g. the D1 and D2 domains); this will aid in the expression and intracellular formation of covalent bonds with half-life extended VWF. More preferably, the Factor VIII comprises N-terminally residues 1 to 1241 or residues 764 to 1241 (after cleavage of the propeptide) of SEQ ID NO: 2 or a variant or a fragment thereof.
Preferably, the D′D3 or D1D2D′D3 domains of VWF, respectively, are attached to the N-terminus of Factor VIII by a cleavable linker. More preferably, the cleavable linker comprises a cleavage site cleavable by a protease related to blood coagulation, even more preferably, the cleavable linker comprises a thrombin cleavage site, preferably one of the thrombin cleavage sites of FVIII. Preferably, the linker comprises additional residues between the D′D3 or D1D2D′D3 domains of VWF and the Factor VIII molecule, the additional residues comprising a peptide of sufficient length to permit the interaction of Factor VIII and VWF via the a3 and D′D3 regions, respectively (FIG. 5E). Preferably, more than 20, 30, 50, 100, or 150 additional amino acids are added. Preferably the additional amino acids comprise a flexible, non-structural peptide, more preferably they comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats, homo-amino acid repeats, or sequences of the FVIII B-domain.
Furthermore, the D′D3 or D1D2D′D3 domains of VWF fused to the N-terminus of FVIII via a linker as described above may be extended between D3 and the described linker by additional VWF domains derived from VWF should further VWF-related functionalities be incorporated into the construct.
A second aspect of the invention is a method of producing the covalent complex of Factor VIII and VWF described above, comprising co-expressing the Factor VIII and VWF molecules in a eukaryotic cell line. Preferably, the eukaryotic cell line is modified to express PACE/furin to ensure efficient processing. Alternatively, the proteins (Factor VIII and VWF) may be produced separately and then combined in vitro, e.g. in a moderately oxidizing environment to enable disulphide bridge formation, but leaving intact the functionalities of Factor VIII and VWF.
In another embodiment of this aspect of the invention the (modified) Factor VIII and the (modified) VWF are covalently connected by chemical crosslinking (see FIG. 7).
A third aspect of the invention is a covalent complex as described above for use in medicine, preferably for use in the treatment or prophylaxis of a bleeding disorder. Preferably, the bleeding disorder is hemophilia A or VWD.
A fourth aspect of the invention is a pharmaceutical composition comprising the covalent complex described above.
A further aspect of the invention is a method of treating or preventing a bleeding disorder by administering an effective amount of a complex described above to a subject in need thereof.


DETAILED DESCRIPTION OF THE INVENTION
As mentioned above, it would be highly beneficial to have a FVIII with a long half-life for the chronic treatment of patients with haemophilia, in particular with haemophilia A. The inventors have now surprisingly found that a covalent complex of von Willebrand factor (VWF) and FVIII can be produced, which provides a longer half-life for FVIII. In particular when the complex is modified to extend its half-life in vivo, e.g. when a half-life extended form of VWF or of FVIII is used, the half-life of FVIII is significantly enhanced, making this an attractive approach for an improved prophylaxis and treatment of patients with bleeding disorders such as haemophilia A. Preferably, in vivo recovery may also be increased by this approach.
Therefore, in a first aspect the present invention relates to a covalent complex comprising von Willebrand factor or variants thereof (VWF) and Factor VIII or variants thereof (Factor VIII), wherein the complex is modified such that it has an extended half-life in vivo. For example, VWF may be a half-life-extended form of VWF; alternatively (or additionally) Factor VIII may be a half-life extended form of FVIII, or a half-life-extending moiety may be attached to the covalent complex via a linker. Preferably, the VWF in the complex comprises a half-life extending moiety. Preferably, the covalent complex is not a heterodimeric Fc fusion with one Fc monomer linked to VWF and the other Fc monomer linked to Factor VIII. More preferably, the covalent link is not provided by the half-life extending moiety.
The term “von Willebrand Factor” or “VWF”, as used herein, refers to any polypeptide having a biological activity of wild type VWF, including variants such as VWF with one or more amino acid substitutions, insertions, minor or major deletions (e.g. deletions of one or more domains), or fusion proteins thereof with another peptide or protein moiety, e.g. a half-life increasing polypeptide, or non-protein moiety, as long as at least a partial activity of von Willebrand Factor is retained. VWF activity may be collagen binding activity, and/or platelet binding activity, and/or FVIII binding activity. FVIII binding activity would be determined for the VWF without FVIII covalently bound via the binding sites on VWF. Assays to measure VWF activity are well established, for example collagen binding assays, Ristocetin cofactor activity assays, or FVIII binding assays. The biological activity is retained in the sense of the invention if the VWF with deletions and/or other modifications retains at least 10%, preferably 15%, 20%, 25%, or 30%, more preferably at least 40% or 50%, even more preferably at least 60%, 70% or 75% of any activity measured for the wild-type VWF. The term “Factor VIII binding domain” refers to a fragment or portion of VWF that retains at least 10%, preferably 15%, 20%, 25%, or 30%, more preferably at least 40% or 50%, even more preferably at least 60%, 70% or 75% of the Factor VIII binding activity of wild type von Willebrand Factor. A Factor VIII binding domain is located at the N-terminus of the mature VWF, for example in the D′D3 domain or fragments thereof.
The gene encoding wild type von Willebrand Factor is transcribed into a 9 kb mRNA which is translated into a pre-propolypeptide of 2813 amino acids with an estimated molecular weight of 310,000 Da. The pre-propolypeptide contains a 22 amino acid long signal peptide, a 741 amino acid pro-polypeptide and the mature subunit. Cleavage of the 741 amino acid long propolypeptide from the N-terminus results in mature VWF consisting of 2050 amino acids. The amino acid sequence of the VWF pre-propolypeptide is shown in SEQ ID NO: 2, and several variants are published, for example NCBI reference sequence NP_000543.2. Unless indicated otherwise, the amino acid numbering of VWF residues in this application refers to SEQ ID NO:2, even though the VWF molecule does not need to comprise all residues of SEQ ID NO:2. The amino acid sequence of mature wildtype VWF corresponds to residues 764 to 2813 of SEQ ID NO: 2. The term “VWF” as used herein refers to any form of VWF or variant thereof that shows at least a partial VWF activity of any one VWF function mentioned above.
The propolypeptide of wild type VWF comprises multiple domains which are arranged in the following order (domain structure of pro-VWF domains D1 to D4 according to Schneppenheim and Budde (2011) J Thrombosis Haemostasis 9 (Suppl. 1) 209-215, domain structure and nomenclature of C-domains according to Zhou et al (2012) Blood 120, 449-458):

D1-D2-D′-D3-A1-A2-A3-D4-C1-C2-C3-C4-C5-C6-CK

The D1 and D2 domains represent the propeptide which is cleaved off to yield the mature VWF. The D′ domain encompasses amino acids 764 to 865 of SEQ ID NO:2; the D′D3 domain encompasses amino acids 764 to 1241, 764 to 1242, 764 to 1247, or 764 to 1270, or any sequence between 764 and 1241 to 1270, respectively, of SEQ ID NO: 2. The carboxy-terminal 90 residues comprise the “CK” domain that is homologous to the “cystine knot” superfamily of proteins. These family members have a tendency to dimerize through disulfide bonds. The C-terminal domains C1 to C6 as defined by Zhou et al correspond to residues 2255 to 2333 (C1), 2334 to about 2402 (C2), 2429 to 2496 (C3), 2497 to 2577 (C4), 2578 to 2646 (C5), and 2647 to 2722 (C6) in SEQ ID NO: 2.
Wild type von Willebrand Factor comprises the amino acid sequence of mature von Willebrand Factor as shown in SEQ ID NO: 2, residues 764 to 2813. Also encompassed are additions, insertions, N-terminal, C-terminal or internal deletions of VWF as long as a biological activity of VWF is retained. The biological activity is retained in the sense of the invention if the VWF with deletions and/or other modifications retains at least 10%, preferably 15%, 20%, 25%, or 30%, more preferably at least 40% or 50%, even more preferably at least 60%, 70% or 75% of any activity measured for the wild-type VWF. The biological activity of wild-type VWF can be determined by the skilled person, for example, using methods for measuring ristocetin co-factor activity (Federici A B et al. 2004. Haematologica 89:77-85), binding of VWF to GP Ibα of the platelet glycoprotein complex Ib-V-IX (Sucker et al. 2006. Clin Appl Thromb Hemost. 12:305-310), or a collagen binding assay (Kallas & Talpsep. 2001. Annals of Hematology 80:466-471), or measuring collagen binding, e.g. by surface plasmon resonance. Other methods of determining biological activity of VWF that may be used comprise the determination of FVIII binding capacity (Veyradier et al., Haemophilia 2011).
The terms “blood coagulation Factor VIII”, “Factor VIII” and “FVIII” are used interchangeably herein. “Blood coagulation Factor VIII” or “Factor VIII” includes wild-type blood coagulation FVIII as well as derivatives or variants of wild-type blood coagulation FVIII where the procoagulant activity of wild-type blood coagulation FVIII is at least partially retained. Derivatives may have deletions like that of the B domain or parts of the B domain, insertions and/or additions compared with the amino acid sequence of wild-type FVIII. The term Factor VIII includes proteolytically processed forms of FVIII, e.g. the two-chain form before activation, comprising heavy chain and light chain, as well as uncleaved, single-chain Factor VIII.
The term “Factor VIII” includes any FVIII variants or mutants that retain at least 10%, preferably at least 15%, 20% or 25%, more preferably at least 30%, 40% or 50%, most preferably at least 60%, 70% or even 75% of the biological activity of wild-type FVIII.
FVIII is synthesized as a single polypeptide chain with a molecular weight of about 280 kDa. The amino-terminal signal peptide is removed upon translocation of FVIII into the endoplasmatic reticulum, and the mature (i.e. after the cleavage of the signal peptide) native FVIII molecule is then proteolytically cleaved in the course of its secretion between the B and a3 domain or within the B-domain. This results in the release of a heterodimer which consists of a C-terminal light chain of about 80 kDa in a metal ion-dependent association with an N-terminal heavy chain fragment of about 90-200 kDa (see also review by Kaufman, Transfusion Med. Revs. 6:235 (1992)).
Physiological activation of the heterodimer occurs through proteolytic cleavage of the protein chains by thrombin. Thrombin cleaves the heavy chain to a 90 kDa protein, and then to 54 kDa and 44 kDa fragments. Thrombin also cleaves the 80 kDa light chain to a 72 kDa protein. It is the latter protein, and the two heavy chain fragments (54 kDa and 44 kDa above), held together by calcium ions, that constitute active FVIII. Inactivation occurs when the 44 kDa A2 heavy chain fragment dissociates from the molecule or when the 72 kDa and 54 kDa proteins are further cleaved by thrombin, activated protein C or FXa. In plasma, FVIII is stabilized by association with an about 50-fold molar excess of von Willebrand Factor protein (“VWF”), which appears to inhibit proteolytic degradation of FVIII as described above.
The amino acid sequence of FVIII is organized into three structural domains: a triplicated A domain of 330 amino acids each, a single B domain of 980 amino acids, and a duplicated C domain of 150 amino acids each. The B domain has no homology to other proteins and provides 18 of the 25 potential asparagine(N)-linked glycosylation sites of this protein. The B domain has apparently no function in coagulation and can be deleted, with the B-domain deleted FVIII molecule still having procoagulatory activity.
As non-limiting examples, Factor VIII as used herein includes FVIII mutants providing reduced or prevented APC cleavage (Amano 1998. Thromb. Haemost. 79:557-563), FVIII mutants with a further stabilized A2 domain (WO 97/40145), FVIII mutants resulting in increased expression (Swaroop et al. 1997. JBC 272:24121-24124), FVIII mutants with reduced immunogenicity (Lollar 1999. Thromb. Haemost. 82:505-508), FVIII reconstituted from independently expressed heavy and light chains (Oh et al. 1999. Exp. Mol. Med. 31:95-100), FVIII mutants with reduced binding to receptors leading to catabolism of FVIII like HSPG (heparan sulfate proteoglycans) and/or LRP (low density lipoprotein receptor related protein) (Ananyeva et al. 2001. TCM, 11:251-257), disulfide bond-stabilized FVIII variants (Gale et al., 2006. J. Thromb. Hemost. 4:1315-1322), FVIII mutants with improved secretion properties (Miao et al., 2004. Blood 103:3412-3419), FVIII mutants with increased cofactor specific activity (Wakabayashi et al., 2005. Biochemistry 44:10298-304), FVIII mutants with improved biosynthesis and secretion, reduced ER chaperone interaction, improved ER-Golgi transport, increased activation or resistance to inactivation and improved half-life (summarized by Pipe 2004. Sem. Thromb. Hemost. 30:227-237), and single-chain FVIII mutants not cleavable by furin. All of these FVIII mutants and variants are incorporated herein by reference in their entirety.
Preferably Factor VIII comprises the full length sequence of FVIII as shown in SEQ ID NO: 6, more preferably, the Factor VIII is a variant of FVIII with a partial or full deletion of the B-domain. Also encompassed are additions, insertions, substitutions, N-terminal, C-terminal or internal deletions of FVIII as long as the biological activity of FVIII is at least partially retained. The biological activity is retained in the sense of the invention if the FVIII with modifications retains at least 10%, preferably at least 15%, 20% or 25%, more preferably at least 30%, 40% or 50%, most preferably at least 60%, 70% or even 75% of the biological activity of wild-type FVIII. The biological activity of Factor VIII can be determined by the artisan as described below.
A suitable test to determine the biological activity of Factor VIII is for example the one stage coagulation assay (Rizza et al. 1982. Coagulation assay of FVIII:C and FIXa in Bloom ed. The Hemophilias. NY Churchchill Livingston 1992) or the chromogenic (two-stage) substrate FVIII activity assay (S. Rosen, 1984. Scand J Haematol 33: 139-145, suppl.). The content of these references is incorporated herein by reference.
The amino acid sequence of the mature wild-type form of human blood coagulation FVIII is shown in SEQ ID NO: 6. The reference to an amino acid position of a specific sequence means the position of said amino acid in the FVIII wild-type protein and does not exclude the presence of mutations, e.g. deletions, insertions and/or substitutions at other positions in the sequence referred to. For example, a mutation of residue 2004 referring to SEQ ID NO: 6 does not exclude that in the modified homologue one or more amino acids at positions 1 through 2332 of SEQ ID NO: 6 are missing.
“Factor VIII” and/or “VWF” within the above definition also include natural allelic variations that may exist and occur from one individual to another and FVIII from other mammalian species, e.g. porcine FVIII. “Factor VIII” and/or “VWF” within the above definition further includes variants of FVIII and or VWF. Such variants differ in one or more amino acid residues from the wild-type sequence. Examples of such differences may include conservative amino acid substitutions, i.e. substitutions within groups of amino acids with similar characteristics, e.g. (1) small amino acids, (2) acidic amino acids, (3) polar amino acids, (4) basic amino acids, (5) hydrophobic amino acids, and (6) aromatic amino acids. Examples of such conservative substitutions are shown in the following table 1.











TABLE 1







(1)
Alanine
Glycine




(2)
Aspartic acid
Glutamic acid


(3)
Asparagine
Glutamine
Serine
Threonine


(4)
Arginine
Histidine
Lysine


(5)
Isoleucine
Leucine
Methionine
Valine


(6)
Phenylalanine
Tyrosine
Tryptophane









The term “conserved residue” in FVIII or VWF relates to an evolutionarily conserved residue, i.e. where at the respective position an identical residue or conservative substitution is found in at least two, preferably at least three mammalian sequences.
The term “variant” of FVIII, VWF or domains thereof refers to proteins or domains with at least 50% sequence identity, preferably at least 55%, 60%, 65%, 70%, 75% or 80% sequence identity, more preferably at least 82%, 84%, 85%, 86%, or 88% sequence identity, even more preferably at least 90%, 92%, 94%, 95% sequence identity to the sequence or relevant part of the sequence shown in SEQ ID NO 6 or 2 respectively, provided that the variant retains at least 10%, preferably 15%, 20%, 25%, or 30%, more preferably at least 40% or 50%, even more preferably at least 60%, 70% or 75% of the biological activity of the protein or domain thereof respectively. It is recognized that certain positions may be more suitable to variation than others. For example, variants of the CK domain of VWF will need to retain the cysteine at position 2773 (or equivalent thereof), which appears to be essential for the formation of dimers. Other cysteine residues in the CK domain (Zhou et al (2012) Blood 120, 449-458), and other domains of VWF and also of FVIII, may also be essential.
To determine % sequence identity, the sequences are aligned using a suitable sequence alignment program, such as the GAP program of the GCG suite, using default parameters (Devereux et al (1984) Nucl Acids Res 12, 387). Other programs that can be used to align sequences include FASTA (Lipman & Pearson (1985) Science 227, 1436-1441), BLAST (Altschul et al (1990) J Mol Biol 215, 403-410), and ClustalW (Thompson et al (1994) Nucl Acids Res 22, 4673-4680).
In one embodiment of the invention, the covalent linkage is achieved by a disulphide bridge between a cysteine residue in FVIII, which is introduced into FVIII by genetic engineering, and a cysteine residue in VWF, which can be either a cysteine found in the wild-type VWF sequence, or it can also be introduced at an appropriate location in the VWF sequence by genetic engineering.
One preferred embodiment of the present invention relates to a covalent complex comprising half-life extended VWF and Factor VIII, wherein Factor VIII is modified by substitution of at least one naturally occurring amino acid with a cysteine residue or insertion of at least one cysteine residue at an appropriate location in the FVIII which forms a disulphide bridge with a cysteine residue in VWF (FIG. 3).
Therefore, according to the invention, the amino acid sequence of the Factor VIII component of the complex differs from that of wild-type FVIII as shown in SEQ ID NO: 6. The modified Factor VIII has at least one mutation, for example a substitution of a naturally occurring amino acid with a cysteine, or an insertion of a cysteine residue at an appropriate position, for example in the a3 domain or the C-terminal domain. Thus there may be one or more, e.g. two, three, four, five or more additional cysteine residues in the Factor VIII of the complex of the invention; more preferably, only one or two additional cysteine residues are introduced, most preferably one additional cysteine residue is introduced.
More preferably, the naturally occurring amino acid that is substituted in Factor VIII is an amino acid in the a3 domain. More preferably, the naturally occurring amino acid that is substituted in Factor VIII is located within amino acids 1653 to 1660 or within amino acids 1667 to 1674 or within amino acids 1675 to 1688 of the FVIII a3 domain. More preferably, the naturally occurring amino acid in the a3 domain is an acidic residue, preferably a conserved acidic residue, or a residue involved in a haemophilic phenotype, or a Tyr residue which may be sulphated in the FVIII a3 domain. Even more preferably, the naturally occurring amino acid in the a3 domain that is substituted with cysteine is selected from E1649, D1658, E1660, D1663, Y1664, D1665, D1666, E1671, E1675, D1676, D1678, I1679, Y1680, E1682, D1683, E1684, even more preferably from T1653, L1655, D1658, E1660, S1669, V1670, N1672, K1673, K1674, E1675, D1676 and/or N1685 in SEQ ID NO: 6 or equivalent position, e.g. in a genetically engineered form of Factor VIII. Most preferably, the naturally occurring amino acid in the a3 domain that is substituted with cysteine is selected from T1654, Q1656, F1677, D1678, I1679, Y1680, D1681, E1682, D1683, E1684, Q1686, S1687 and/or P1688 in SEQ ID NO: 6 or equivalent position, e.g. in a genetically engineered form of FVIII.
Preferably, the naturally occurring amino acid in VWF is selected by a relative ratio higher than 0.5 of covalently bound Factor VIII to VWF as experimentally assessed shown in example 6 and activity of Factor VIII as experimentally assessed shown in example 9. Most preferably, the naturally occurring amino acid in VWF is the selected by a said ratio of higher than 1.0.
In another preferred embodiment of the first aspect of the invention, the naturally occurring amino acid that is substituted with cysteine is in the C-terminal domain of FVIII, preferably an amino acid in the FVIII region between amino acids 2051 and 2270, more preferably the residue is selected from 12098, S2119, N2129, R2150, P2153, W2229, Q2246 in SEQ ID NO: 6 or equivalent position, e.g. in an engineered form of FVIII.
In a further, preferred embodiment of the first aspect of the invention, VWF is also modified by substitution of a naturally occurring amino acid with a cysteine residue, or insertion of a cysteine residue, which forms a disulphide bridge with a cysteine residue introduced into Factor VIII. The naturally occurring amino acid in VWF is a residue within the D′ or D3 region, preferably a basic residue in the D′ or D3 region or a highly conserved residue in the D′ or D3 region or a residue involved in type N-VWD or an amino acid exposed on the surface of the VWF molecule. In a preferred embodiment of the invention a cysteine residue is inserted into the TIL′ domain, the E′ domain, the VWD3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain or the naturally occurring amino acid in VWF that is substituted with a cysteine residue is a residue in the TIL′ domain, the E′ domain, the VWD3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain (domains as defined by Zhou et al (2012) Blood 120(2) 449-458). For example, the naturally occurring amino acid in VWF is selected from R768, R782, R816, R820, R826, R852, R854, R906, R924, R945, R960, R976, R1035, H817, H831, H861, H874, H916, H952, H977, H1047, K773, K790, K834, K843, K855, K882, K912, K920, K922, K923, K940, K948, K968, K985, K991, K1026, K1036, K1052, K1073, G785, M800, D879, Q1053, E1078, E787, A789, T789, T791, Q793, N794, Y795, P828, F830, E835, P838, D853, W856, L884. Preferably, the naturally occurring amino acid in VWF is selected from T795, R816, D879, D951, E1161, and/or R1204 in SEQ ID NO: 2 or equivalent position, e.g. in an engineered form of VWF. More preferably, the naturally occurring amino acid in VWF is selected from R768, R782, H817, D853, E933, L984, E1015, D1076, E1078, P1079, K1116 and/or N1134 in SEQ ID NO: 2 or equivalent position, e.g. in an engineered form of VWF.
Preferably, the naturally occurring amino acid in VWF is selected by a relative ratio higher than 0.5 of covalently bound FVIII to VWF as experimentally assessed shown in example 6 and activity of Factor VIII as experimentally assessed shown in example 9. Most preferably, the naturally occurring amino acid in VWF is selected by a said ratio higher than 1.0.
Preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in FVIII and VWF are introduced:
A/T789C:D1658C, M800C:D1658C, P828C:D1658C, F830C:D1658C, P838C:D1658C, D853C:D1658C, R924C:D1658C, E1078C:D1658C, F830C:D1663C, P838C:D1663C, D853C:D1663C, E1078C:D1663C, E1078C:Y1664C, P838C:D1665C, R816C:D1666C, F830C:D1666C, E835C:D1666C, T791C:E1671C, F830C:E1671C, E835C:E1671C, D879C:E1671C, A/T789C:E1675C, T791C:E1675C, N794C:E1675C, P828C:E1675C, F830C:E1675C, E835C:E1675C, P838C:E1675C, D879CE1675C, R924C:E1675C, E1078C:E1675C, A/T789C:D1676C, T791C:D1676C, N794C:D1676C, F830C:D1676C, E835C:D1676C, A/T789C:D1678C, F830C:D1678C, E835C:D1678C, A/T789C:I1679C, M800C:I1679C, F830C:I1679C, E835C:I1679C, R854C:I1679C, D879C:I1679C, A/T789C:Y1680C, T791C:Y1680C, Y795C:Y1680C, M800C:Y1680C, R816C:Y1680C, F830C:Y1680C, E835C:Y1680C, R854C:Y1680C, D879C:Y1680C, A/1789C:E1682C, Y795C:E1682C, R816C:E1682C, P828C:E1682C, E835C:E1682C, P838C:E1682C, R854C:E1682C, D879C:E1682C, Q1053C:E1682C.
More preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in FVIII and VWF are introduced:
F1677C:R768C, I1679C:R768C, Y1680C:R768C, N1685C:R768C, T1654C:R782C, E1675C:R782C, N1685C:R782C, Q1686C:Y795C, S1687C:Y795C, P1688C:Y795C, P1688C:Y795C, E1675C:H816C, D1676C:R816C, Y1680C:R816C, E1682C:R816C, P1688C:R816C, Y1680C:H817C, N1685C:H817C, Q1686C:H817C, S1687C:H817C, I1679C:P828C, Y1680C:D853C, N1685C:D853C, T1654C:D879C, P1688C:E933C, P1688:T951C, T1653C:L984C, T1654C:L984C, L1655C:L984C, S1669C:L984C, K1673C:L984C, D1683C:L984C, T1653C:E1015C, L1655C:E1015C, S1669C:E1015C, V1670C:E1015C, N1672C:E1015C, K1673C:E1015C, D1678C:E1015C, I1679C:E1015C, E1684C:E1015C, S1687C:E1015C, F1677C:V1027C, I1679C:V1027C, P1688C:V1027C, S1657C:D1076C, K1673C:D1076C, D1676C:D1076C, F1677C:D1076C, I1679C:D1076C, E1682C:D1076C, D1683C:D1076C, Q1686C:D1076C, D1676C:E1078C, I1679C:E1078C, Y1680C:E1078C, T1653C:P1079C, L1655C:P1079C, 51657C:P1079C, D1658C:P1079C, E1682C:P1079C, V1670C:K1116C, K1673C:K1116C, D1676C:K1116C, D1678C:K1116C, D1681C:K1116C, Q1686C:K1116C, P1688C:K1116C, T1653C:N1134C, L1655C:N1134C, E1660C:N1134C, D1678C:N1134C, D1683C:N1134C, E1684C:N1134C, Q1686C:N1134C, T1653C:E1161C, L1655C:E1161C, K1674C:E1161C, D1676C:E1161C, E1684C:E1161C, S1687C:E1161C, P1688C:R1204C.
Most preferably, one or more of the following combinations of substitutions of naturally occurring amino acid residues in FVIII and VWF are introduced:
T1654:P1079, T1654:N1134, Q1656:D1076, F1677:K1116, D1678:R782, I1679:K1116, Y1680:H817, Y1680:D853, Y1680:E1078, D1681:R768, E1682:R768, D1683:R768, E1684:R768, Q1686:R768, Q1686:E1015, S1687:R768, 51687:N1134, P1688:R768, P1688:H817, P1688:E933, P1688:L984, P1688:E1015, P1688:D1076 and P1688:N1134.
Preferably, the naturally occurring amino acids of the combination of one or more inserted cysteine residues in VWF and Factor VIII are selected by a relative ratio higher than 0.5 of covalently bound Factor VIII to VWF as experimentally assessed shown in example 6 and activity of Factor VIII as experimentally assessed shown in example 9. Most preferably, the naturally occurring amino acids of the combination of one or more inserted cysteine residues in VWF and Factor VIII are selected by a said ratio of higher than 1.0.
Preferably, the Factor VIII in the complex of the invention is a genetically engineered Factor VIII. The engineered Factor VIII may contain a partial or complete B-domain deletion, it may be a mutated Factor VIII comprising one or more amino acid substitutions, insertions, deletions or combinations thereof, it may be a single chain version of Factor VIII, or it may be a fusion polypeptide with a half-life extending moiety, e.g. a half-life extending polypeptide (HLEP). It may also be a chemically modified Factor VIII, e.g. modified by attachment of a half-life extending moiety such as polyethylene glycol (PEGylation), glycosylated PEG, hydroxyl ethyl starch (HESylation), polysialic acids, elastin-like polypeptides, heparosan polymers or hyaluronic acid. It may also be a Factor VIII from another species, e.g. another mammalian species, e.g. porcine Factor VIII.
Preferably, the VWF in the complex of the invention is a half-life extended form of VWF.
As used herein, the term “half-life” indicates the functional half-life of the respective protein, i.e. the time it takes for half the activity to be lost in vivo, i.e. in blood.
In a preferred embodiment, the half-life extended form of VWF in the complex of the invention is a genetically engineered form of VWF. More preferably, the genetically engineered VWF is a fusion protein of VWF with a half-life extending moiety such as a half-life extending polypeptide (HLEP).
A “half-life enhancing polypeptide” or “half-life extending polypeptide” (HLEP) as used herein is a moiety that is fused to the protein of interest, in particular to VWF, in order to extend its half-life. Preferred HLEPs are selected from the group consisting of albumin, a member of the albumin-family, the constant region of immunoglobulin G and fragments thereof, polypeptides or lipids capable of binding under physiological conditions to albumin, to members of the albumin family as well as to portions of an immunoglobulin constant region. It may be a full-length half-life-enhancing protein described herein (e.g. albumin, a member of the albumin-family or the constant region of immunoglobulin G) or one or more domains or fragments thereof that are capable of stabilizing or prolonging the therapeutic activity or the biological activity of the coagulation factor. Such fragments may be composed of 10 or more amino acids in length or may include at least about 15, at least about 20, at least about 25, at least about 30, at least about 50, at least about 100, or more contiguous amino acids from the HLEP sequence or may include part or all of specific domains of the respective HLEP, as long as the HLEP fragment provides a functional half-life extension of at least 25% compared to a wild-type VWF or Factor VIII.
The HLEP may be a variant of a HLEP. The term “variants” includes insertions, deletions and substitutions, either conservative or non-conservative, where such changes allow the half-life extending properties of the HLEP to be at least partially maintained.
In particular, the proposed VWF HLEP fusion constructs of the invention may include naturally occurring polymorphic variants of HLEPs and fragments of HLEPs. The HLEP may be derived from any vertebrate, especially any mammal, for example human, monkey, cow, sheep, or pig. Non-mammalian HLEPs include, but are not limited to, hen and salmon.
Preferably, the half-life extending moiety is selected from albumin or variants or fragments thereof, immunoglobulin constant region or variants and portions thereof, e.g. the Fc fragment, solvated random chains with large hydrodynamic volume (e.g. XTEN, homo-amino acid repeats (HAP) or proline-alanine-serine repeats (PAS)), afamin or variants thereof, alpha-fetoprotein or variants thereof, Vitamin D binding protein or variants thereof, transferrin or variants thereof, carboxyl-terminal peptide (CTP) of human chorionic gonadotropin-R subunit, polypeptides or lipids capable of binding under physiological conditions to albumin or immunoglobulin constant regions. Most preferably, the HLEP is human serum albumin.
The terms, “human serum albumin” (HSA) and “human albumin” (HA) are used interchangeably in this application. The terms “albumin” and “serum albumin” are broader, and encompass human serum albumin (and fragments and variants thereof) as well as albumin from other species (and fragments and variants thereof).
As used herein, “albumin” refers collectively to albumin polypeptide or amino acid sequences, or an albumin fragment or variant, having one or more functional activities (e.g., biological activities) of albumin such as binding of Ca2+, Na+, K+, Zn2+ ions, fatty acids, hormones, bilirubin or binding to FcRn. In particular, “albumin” refers to human albumin or fragments thereof, especially the mature form of human albumin as shown in SEQ ID NO: 7 herein or albumin from other vertebrates or fragments thereof, or analogs or variants of these molecules or fragments thereof.
In particular, the proposed VWF fusion constructs of the invention may include naturally occurring polymorphic variants of human albumin and fragments of human albumin. Generally speaking, an albumin fragment or variant will be at least 30, most preferably more than 70 amino acids long. The albumin variant may preferentially consist of or alternatively comprise at least one whole domain of albumin or fragments of said domains, for example domains 1 (amino acids 1-194 of SEQ ID NO:7), 2 (amino acids 195-387 of SEQ ID NO: 7), 3 (amino acids 388-585 of SEQ ID NO: 7), 1+2 (1-387 of SEQ ID NO: 7), 2+3 (195-585 of SEQ ID NO: 7) or 1+3 (amino acids 1-194 of SEQ ID NO: 3+amino acids 388-585 of SEQ ID NO: 7). Each domain is itself made up of two homologous subdomains namely 1-105, 120-194, 195-291, 316-387, 388-491 and 512-585, with flexible inter-subdomain linker regions comprising residues Lys106 to Glu119, Glu292 to Val315 and Glu492 to Ala511.
The albumin portion of the VWF fusion constructs within the complex of the invention may comprise at least one subdomain or domain of HA or conservative modifications thereof.
In a preferred embodiment the N-terminus of albumin is fused to the C-terminus of the amino acid sequence of the modified VWF. That is, the complex of the present invention may comprise the structure:

mVWF-L-A

wherein mVWF is the modified VWF as described hereinabove, L is an optional peptidic linker sequence and A is albumin as defined hereinabove.

The modified VWF or the complex of the FVIII with the modified VWF of the invention may comprise more than one HLEP sequence, e.g. two or three HLEP sequences. These multiple HLEP sequences may be fused to the C-terminal part of VWF in tandem, e.g. as successive repeats.
The HLEP may also be coupled to VWF by a peptide linker. The linker should be non-immunogenic and may be a non-cleavable or cleavable linker. Non-cleavable linkers may be comprised, for example, of alternating glycine and serine residues as exemplified in WO2007/090584.
A possible peptidic linker between the VWF moiety and the HLEP moiety may also consist of peptide sequences, which serve as natural interdomain linkers in human proteins. Preferably such peptide sequences in their natural environment are located close to the protein surface and are accessible to the immune system so that one can assume a natural tolerance against this sequence. Examples are given in WO2007/090584. Preferably, the linker region comprises a sequence of VWF, which should result in a decreased risk of neoantigenic properties of the expressed fusion protein.
Cleavable linkers should be flexible enough to allow cleavage by proteases. The linker peptides are preferably cleavable by the proteases of the coagulation system, for example FIIa, FIXa, FXa, FXIa, FXIIa and/or FVIIa.
The HLEP may also be a peptide that can non-covalently bind a half-life extending moiety such as a protein naturally occurring in human plasma (e.g. albumin, immunoglobulins). In this case, VWF would be modified in a way that it bears, preferably C-terminally or N-terminally to the D′D3 domain, a peptide binding the half-life extending moiety.
In another embodiment of the invention, the half-life of VWF is extended by chemical modification, e.g. attachment of a half-life extending moiety such as polyethylene glycol (PEGylation), glycosylated PEG, hydroxyl ethyl starch (HESylation), polysialic acids, elastin-like polypeptides, heparosan polymers or hyaluronic acid.
Another embodiment of the invention is a covalent complex of Factor VIII and half-life extended VWF, where Factor VIII is connected to VWF via an additional peptide or polypeptide sequence added to Factor VIII. Preferably the added sequence comprises one or more VWF domains.
As mentioned above, during biosynthesis in the endoplasmatic reticulum, the VWF propeptide monomers are assembled into dimers via a C-terminal disulphide bridge formed between the C-terminal cystine knot domains (CK). The inventors have now surprisingly found that this CK domain, when fused with Factor VIII, leads to a covalent, disulphide linkage between the CK domains introduced into Factor VIII, and that naturally present in VWF. Thus, this presents another novel way of achieving the covalent complex between Factor VIII and VWF of the present invention. The efficiency with which the covalent linkage is formed can be enhanced if additional C domains are included in the portion of the VWF that is fused to Factor VIII. These may be for example the C5 to C6 domains, the C3 to C6 domains or the C1 to C6 domains as defined by Zhou et al (2012, Blood 120, 449-458), optionally extended by additional VWF domains.
Therefore, another embodiment of the invention is a covalent complex comprising VWF and Factor VIII, wherein the VWF is a half-life extended form of VWF, wherein Factor VIII is modified to comprise the C-terminal domain CK of VWF, optionally containing additional VWF domains. Preferably, the Factor VIII is so modified at its C-terminus. More preferably, the Factor VIII comprises, preferably at its C-terminus, residues 2723 to 2813, 2722-2813, 2724-2813, 2580-2813, 2578-2813, 2497-2813, 2429-2813, 2400-2813, 2334-2813, 2255-2813, 1873-2813, 1683-2813, 1277-2813, 1264-2813 or 764-2813 of SEQ ID NO: 2 or a variant thereof, provided that cysteine residue 2773 (or equivalent thereof) is preserved. Preferably, the modified Factor VIII in addition to the CK domain comprises C6, C5 to C6, C4 to C6, C3 to C6, C2 to C6, or C1 to C6 domains of VWF as defined by Zhou et al (2012, Blood 120, 449-458) or variants thereof. Optionally, the CK and C domains may be extended by additional domains of VWF.
In another embodiment of the invention, the Factor VIII is N-terminally fused with one or more of the C-terminal domains of VWF (see FIGS. 6A-6C). Such C-terminal domains may be derived from the C-terminal cystine knot (CK) domain of VWF and may additionally comprise one or more of the C-domains, D-domains, or A-domains of VWF up to the whole VWF sequence (see FIGS. 2A and 2B for the structure of VWF). More preferably, the Factor VIII comprises, preferably at its N-terminus, residues 2723 to 2813, 2722-2813 2724-2813, 2580-2813, 2578-2813, 2497-2813, 2429-2813, 2400-2813, 2334-2813, 2255-2813, 1873-2813, 1683-2813, 1277-2813 or 1264-2813 or 764-2813 of SEQ ID NO: 2 or variants thereof, provided that cysteine residue 2773 (or equivalent thereof) is preserved. In this embodiment, a signal peptide is added to the N-terminus of the VWF domains, and the VWF domains are fused to the N-terminus of mature Factor VIII (without signal peptide) either directly or via a polypeptide linker.
Preferably, the C-terminal CK domain, optionally extended by additional domains, of VWF is attached to Factor VIII by a cleavable linker. A linker sequence may consist of one or more amino acids, e.g. of 1 to 200, 1 to 150, 1 to 100, 1 to 50, 1 to 30, 1 to 20, 1 to 15, 1 to 10, 1 to 5 or 1 to 3 (e.g. 1, 2 or 3) amino acids and which may be equal or different from each other. Usually, the linker sequences are not present at the corresponding position in the wild-type coagulation factor. Preferably, the linker is a cleavable linker, i.e. it comprises a cleavage site for a protease, preferably it comprises a cleavage site that is cleavable by a protease related to blood coagulation, more preferably, the cleavable linker comprises a thrombin cleavage site, even more preferably it comprises one of the thrombin cleavage sites of FVIII.
Examples of cleavable linkers are







(aa1675-1720 of SEQ ID NO: 6 (FVIII))


EDFDIYDEDENQSPRSFQKKTRHYFIAAVERLWDYGMSSSPHVLRN


or


 


(aa714-764 of SEQ ID NO: 6)


NTGDYYEDSYEDISAYLLSKNNAIEPRSFSQNSRHRSTRQKQFNATTIPEN


or


 


(aa357-399 of SEQ ID NO: 6)


VVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDYAPLV


or


 


(aa357-396 of SEQ ID NO: 6)


VVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWDYA


or


 


(aa357-394 of SEQ ID NO: 6)


VVRFDDDNSPSFIQIRSVAKKHPKTWVHYIAAEEEDWD






Including deletions, insertions and/or substitutions thereof, given that cleavability is retained.
Optionally, the linker comprises additional amino acid residues, which are preferably introduced between the domain(s) derived from VWF and the cleavable part of the linker. Preferably, the additional residues provide a peptide of sufficient length to permit the interaction of Factor VIII and VWF, in particular via the a3 and D′D3 regions, respectively. The additional amino acid residues may be more than 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 120 or 150 amino acids. Preferably the additional amino acid residues form a flexible, “non-structural” peptide, and more preferably comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats, homo-amino acid repeats, or sequences of the FVIII B-domain.
Another embodiment of the invention is a covalent complex comprising VWF and Factor VIII, wherein the VWF is a half-life extended form of VWF, and wherein Factor VIII is modified to comprise the D′D3 region of VWF, and optionally additional domains of VWF (FIGS. 5A-5E). Preferably, the Factor VIII is so modified that its partial or complete B-domain is replaced by the VWF D′D3 region or fragments thereof (FIGS. 5D and 5E). More preferably, the Factor VIII comprises, preferably instead of its (or part of its) B domain, residues 764 to 1241, 764 to 1242, 764 to 1247 or 764 to 1270 or any sequence between 764 and 1241 to 1270, respectively, of SEQ ID NO: 2 or a variant or a fragment thereof.
Preferably, the D′D3 domain of VWF is attached to Factor VIII such that a two-chain molecule is generated upon secretion of the molecule into the cell culture medium and that the D′D3 domain is located at the N-terminus of the Factor VIII light chain. This can be achieved by introducing a cleavable linker, comprising, for example, a cleavage site for PACE/furin, between the Factor VIII a2 domain and the VWF D′D3 domain (FIGS. 5D and 5E). Optionally, the linker comprises additional residues between the D′D3 domain of VWF and the Factor VIII a3 domain (FIG. 5E). The additional residues comprise a peptide of sufficient length to permit the intramolecular interaction of Factor VIII and VWF via the a3 and D′D3 regions, respectively. Preferably, the additional residues are less than 300, 250, 200, 150, 120, 100, 90, 80, 70, 60, 50, 40, 30, 25, 20, 15, or 10 amino acids. The additional amino acid residues may comprise a flexible, “non-structural” peptide, preferably they comprise or even consist of glycine-serine repeats, proline-alanine-serin repeats or homo-amino acid repeats, or sequences derived from the FVIII B-domain.
The embodiments described above are the mature form; the skilled person will be able to construct a protein to be expressed in order to obtain the mature form, e.g. by including additional sequences, e.g. a signal sequence at the N-terminus.
Alternatively, the N-terminus of Factor VIII is connected to the C-terminus of the VWF D′D3 domains or fragments thereof, optionally containing further domains of VWF (e.g. the D1 and D2 domains), which is preferably N-terminally extended by a signal peptide. This will aid in the expression and intracellular formation of covalent bonds with half-life extended VWF. More preferably, the VWF portion comprises N-terminally residues 1 to 1241 or residues 764 to 1241 (after cleavage of the propeptide) of SEQ ID NO: 2 or a variant or a fragment thereof.
Preferably, the D′D3 or D1D2D′D3 domains of VWF, respectively, are attached to the N-terminus of Factor VIII by a cleavable linker. More preferably, the cleavable linker comprises a protease cleavage site, more preferably a cleavage site for one of the proteases of the coagulation system, even more preferably a thrombin cleavage site, preferably one of the thrombin cleavage sites of FVIII. Optionally, the linker comprises additional residues between the D′D3 or D1D2D′D3 domains of VWF and the Factor VIII molecule, the additional residues comprising a peptide of sufficient length to permit the intramolecular interaction of Factor VIII and VWF via the a3 and D′D3 regions, respectively. Preferably, more than 20, 30, 40, 50, 70, 100 or 150 additional amino acids are added. Preferably the additional amino acids comprise a flexible, non-structural peptide, more preferably they comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats, homo-amino acid repeats, or sequences of the FVIII B-domain.
As a further alternative, the C-terminus of Factor VIII is connected to the N-terminus of the VWF D′D3 domains or fragments thereof. This will aid in the expression and intracellular formation of covalent bonds with coexpressed half-life extended VWF. More preferably, the VWF comprises amino acids 764 to 1241, 764 to 1242, 764 to 1247 or 764 to 1270 or any sequence between 764 and 1241 to 1270, respectively, of SEQ ID NO: 2 or a variant or a fragment thereof.
Preferably, the D′D3 domains of VWF (or the D1D2D′D3 domains) are attached to the N-terminus of Factor VIII by a cleavable linker; inclusion of a signal peptide N-terminal to the VWF domains would lead to secretion upon expression of the protein in mammalian cells. More preferably, the cleavable linker comprises a thrombin cleavage site, preferably one of the thrombin cleavage sites of FVIII which comprise of sequences encompassing the thrombin cleavage sites at amino acid positions 372, 740 and/or 1689 of SEQ ID NO. 6, respectively.
Optionally, the linker comprises additional residues between the D′D3 domains of VWF and the Factor VIII molecule, the additional residues comprising a peptide of sufficient length to permit the interaction of Factor VIII and VWF via the a3 and D′D3 regions, respectively. Preferably, more than 20, 30, 40, 50, 70, 100, 120 or 150 additional amino acids are added. Preferably the additional amino acids comprise a flexible, non-structural peptide, more preferably they comprise or even consist of glycine-serine repeats, proline-alanine-serine repeats, homo-amino acid repeats, or sequences of the FVIII B-domain.
Examples of such fusion proteins with various linkers are shown in SEQ ID NOs: 144-177; each sequence shown, i.e. the DNA and its translation product (the fusion protein), as well as DNA sequences encoding the same translation product by virtue of the redundancy of the genetic code (e.g. codon-optimized versions of those DNA sequences) are specific embodiments of the invention. However, the skilled person will be able to design many more examples of such fusion proteins that also fall within the present invention.
Preferably the VWF portion of the complex of the invention forms multimers as it does in nature. For particular reasons it may be desirable for the VWF portion of the complex to form not more than a dimer. This can be achieved by deleting the propeptide sequence of the VWF and fusing the VWF signal peptide directly to the N-terminus of D′, thereby allowing for the expression of a propeptide depleted VWF molecule. Due to the absence of the propeptide the multimerization via the D′D3 domain will be blocked. For other particular reasons it may be desirable for the VWF portion of the complex to form not more than a monomer. This can be achieved by deleting the propeptide sequence of the VWF and fusing the VWF signal peptide directly to D′ allowing for the expression of a propeptide depleted VWF molecule and in addition by introducing a mutation of Cys2773 into another suitable amino acid, e.g. alanine.
Another embodiment of the invention is the combination of any of the embodiments described above to form a Factor VIII/VWF complex where one or more covalent bond(s) exist(s) directly between the Factor VIII and VWF binding sites (preferably a disulphide bond), and where another covalent bond exists between the Factor VIII and the VWF part of the molecule and where one or more HLEPs is connected to Factor VIII, to VWF, or to both (FIGS. 12A-12N). Such Factor VIII/VWF complexes may be advantageous because they may be producible with higher yields than complexes with only a disulphide bond between the Factor VIII and the VWF moiety.
A second aspect of the invention is a method of producing the covalent complexes of Factor VIII and VWF described above, comprising co-expressing the Factor VIII and VWF in a eukaryotic cell line. Therefore, the invention also relates to polynucleotides encoding the proteins forming the complex of the invention.
The term “polynucleotide(s)” generally refers to any polyribonucleotide or polydeoxyribonucleotide that may be unmodified RNA or DNA or modified RNA or DNA. The polynucleotide may be single- or double-stranded DNA, single or double-stranded RNA. As used herein, the term “polynucleotide(s)” also includes DNAs or RNAs that comprise one or more modified bases and/or unusual bases, such as inosine. It will be appreciated that a variety of modifications may be made to DNA and RNA that serve many useful purposes known to those of skill in the art. The term “polynucleotide(s)” as it is employed herein embraces such chemically, enzymatically or metabolically modified forms of polynucleotides, as well as the chemical forms of DNA and RNA characteristic of viruses and cells, including, for example, simple and complex cells.
The skilled person will understand that, due to the degeneracy of the genetic code, a given polypeptide can be encoded by different polynucleotides. These “variants” are encompassed by this invention.
Preferably, the polynucleotide of the invention is an isolated polynucleotide. The term “isolated” polynucleotide refers to a polynucleotide that is substantially free from other nucleic acid sequences, such as and not limited to other chromosomal and extrachromosomal DNA and RNA. Isolated polynucleotides may be purified from a host cell. Conventional nucleic acid purification methods known to the skilled person may be used to obtain isolated polynucleotides. The term also includes recombinant polynucleotides and chemically synthesized polynucleotides.
The invention further relates to a group of polynucleotides which together encode the modified VWF and/or the modified Factor VIII of the invention, or the polypeptide of the invention comprising the modified VWF and/or the modified Factor VIII. For example, a first polynucleotide in the group may encode the heavy chain of a modified Factor VIII, and a second polynucleotide may encode the light chain of a modified Factor VIII, and a third polynucleotide may encode the modified VWF.
Yet another aspect of the invention is a plasmid or vector comprising a polynucleotide according to the invention. Preferably, the plasmid or vector is an expression vector. In a particular embodiment, the vector is a transfer vector for use in human gene therapy.
The invention also relates to a group of plasmids or vectors that comprise the above group of polynucleotides. A first plasmid or vector may contain said first polynucleotide, and a second plasmid or vector may contain said second polynucleotide. Alternatively, two or more coding sequences are cloned into one expression vector either using separate promoter sequences or one promoter and an internal ribosome entry site (IRES) element to direct the expression of more than one protein that is part of the complex of the invention.
Still another aspect of the invention is a host cell comprising a polynucleotide, a plasmid or vector of the invention, or a group of polynucleotides or a group of plasmids or vectors as described herein.
The host cells of the invention may be employed in a method of producing the covalent complex of the invention. The method comprises:

    
    
        (a) culturing host cells of the invention under conditions such that the desired protein complex is expressed; and
        (b) optionally recovering the desired protein complex from the host cells or from the culture medium.
    
    


The production of recombinant mutant proteins at high levels in suitable host cells requires the assembly of the above-mentioned modified cDNAs into efficient transcriptional units together with suitable regulatory elements in a recombinant expression vector that can be propagated in various expression systems according to methods known to those skilled in the art. Efficient transcriptional regulatory elements could be derived from viruses having animal cells as their natural hosts or from the chromosomal DNA of animal cells. Preferably, promoter-enhancer combinations derived from the Simian Virus 40, adenovirus, BK polyoma virus, human cytomegalovirus, or the long terminal repeat of Rous sarcoma virus, or promoter-enhancer combinations including strongly constitutively transcribed genes in animal cells like beta-actin or GRP78 can be used. In order to achieve stable high levels of mRNA transcribed from the cDNAs, the transcriptional unit should contain in its 3′-proximal part a DNA region encoding a transcriptional termination-polyadenylation sequence. Preferably, this sequence is derived from the Simian Virus 40 early transcriptional region, the rabbit beta-globin gene, or the human tissue plasminogen activator gene.
The cDNAs may then be integrated into the genome of a suitable host cell line for expression of the modified Factor VIII and/or VWF proteins, which then assemble into the covalent complex of the invention. Alternatively, stable episomal vectors can also be used that remain in the cell as stable extrachromosomal elements. Preferably this cell line should be an animal cell-line of vertebrate origin in order to ensure correct folding, disulfide bond formation, asparagine-linked glycosylation and other post-translational modifications as well as secretion into the cultivation medium. Examples of other post-translational modifications are tyrosine O-sulfation and proteolytic processing of the nascent polypeptide chain. Examples of cell lines that can be used are monkey COS-cells, mouse L-cells, mouse C127-cells, hamster BHK-21 cells, human HEK-293 cells, and hamster CHO-cells.
The recombinant expression vector encoding the corresponding cDNAs can be introduced into an animal or human cell line in several different ways. For instance, recombinant expression vectors can be created from vectors based on different animal viruses. Examples of these are vectors based on baculovirus, vaccinia virus, adenovirus, and preferably bovine papilloma virus.
The transcription units encoding the corresponding DNAs can also be introduced into animal cells together with another recombinant gene which may function as a dominant selectable marker in these cells in order to facilitate the isolation of specific cell clones which have integrated the recombinant DNA into their genome. Examples of this type of dominant selectable marker genes are Tn5 amino glycoside phosphotransferase, conferring resistance to geneticin (G418), hygromycin phosphotransferase, conferring resistance to hygromycin, and puromycin acetyl transferase, conferring resistance to puromycin. The recombinant expression vector encoding such a selectable marker can reside either on the same vector as the one encoding the cDNA of the desired protein, or it can be encoded on a separate vector which is simultaneously introduced and integrated to the genome of the host cell, frequently resulting in a tight physical linkage between the different transcription units.
Other types of selectable marker genes which can be used together with the cDNA of the desired proteins are based on various transcription units encoding dihydrofolate reductase (dhfr). After introduction of this type of gene into cells lacking endogenous dhfr-activity, preferentially CHO-cells (DUKX-B11, DG-44), it will enable these to grow in media lacking nucleosides. An example of such a medium is Ham's F12 without hypoxanthine, thymidin, and glycine. These dhfr-genes can be introduced together with the cDNA transcriptional units into CHO-cells of the above type, either linked on the same vector or on different vectors, thus creating dhfr-positive cell lines producing recombinant protein.
If the above cell lines are grown in the presence of the cytotoxic dhfr-inhibitor methotrexate, new cell lines resistant to methotrexate will emerge. These cell lines may produce recombinant protein at an increased rate due to the amplified number of linked dhfr and the desired protein's transcriptional units. When propagating these cell lines in increasing concentrations of methotrexate (1-10000 nM), new cell lines can be obtained which produce the desired protein at very high rate.
The above cell lines producing the desired protein can be grown on a large scale, either in suspension culture or on various solid supports. Examples of these supports are micro carriers based on dextran or collagen matrices, or solid supports in the form of hollow fibres or various ceramic materials. When grown in cell suspension culture or on micro carriers the culture of the above cell lines can be performed either as a batch culture or as a perfusion culture with continuous production of conditioned medium over extended periods of time. Thus, according to the present invention, the above cell lines are well suited for the development of an industrial process for the production of the desired recombinant mutant proteins
It is preferred to purify the complex of the invention to ≧80% purity, more preferably 95% purity, and particularly preferred is a pharmaceutically pure state that is greater than 99.9% pure with respect to contaminating macromolecules from the cell culture, particularly other proteins and nucleic acids, and free of infectious and pyrogenic agents. Preferably, an isolated or purified modified covalent complex of the invention is substantially free of other, non-related polypeptides.
The covalent complex of the invention, which accumulates in the medium of secreting cells of the above types, can be concentrated and purified by a variety of biochemical and chromatographic methods, including methods utilizing differences in size, charge, hydrophobicity, solubility, specific affinity, etc. between the desired protein and other substances in the cell cultivation medium.
An example of such purification is the adsorption of the recombinant mutant protein to a monoclonal antibody, directed to e.g. a HLEP, preferably human albumin, or directed to the respective coagulation factor, which is immobilised on a solid support. After adsorption of the complex to the support, washing and desorption, the protein can be further purified by a variety of chromatographic techniques based on the above properties. The order of the purification steps is chosen e.g. according to capacity and selectivity of the steps, stability of the support or other aspects. Preferred purification steps e.g. are but are not limited to ion exchange chromatography steps, immunoaffinity chromatography steps, affinity chromatography steps, hydrophobic interaction chromatography steps, dye chromatography steps, hydroxyapatite chromatography steps, multimodal chromatography steps, and size exclusion chromatography steps.
In order to minimize the theoretical risk of virus contaminations, additional steps may be included in the process that allow effective inactivation and/or elimination of viruses. Such steps e.g. are heat treatment in the liquid or solid state, treatment with solvents and/or detergents, radiation in the visible or UV spectrum, gamma-irradiation or nanofiltration.
The modified polynucleotides (e.g. DNA) of this invention may also be integrated into a transfer vector for use in the human gene therapy.
In another embodiment of this aspect of the invention, the (modified) Factor VIII and the (modified) VWF are covalently connected by chemical cross-linking.
The various products of the invention are useful as medicaments. Accordingly, a third aspect of the invention is a covalent complex as described above for use in medicine, preferably for use in the treatment or prophylaxis of a bleeding disorder. Preferably, the bleeding disorder is hemophilia A or VWD.
A fourth aspect of the invention is a pharmaceutical composition comprising the covalent complex described above. The covalent complex as described in this invention can be formulated into pharmaceutical preparations for therapeutic use. The purified protein may be dissolved in conventional physiologically compatible aqueous buffer solutions to which there may be added, optionally, pharmaceutical excipients to provide pharmaceutical preparations.
Such pharmaceutical carriers and excipients as well as suitable pharmaceutical formulations are well known in the art (see for example “Pharmaceutical Formulation Development of Peptides and Proteins”, Frokjaer et al., Taylor & Francis (2000) or “Handbook of Pharmaceutical Excipients”, 3rd edition, Kibbe et al., Pharmaceutical Press (2000)). Standard pharmaceutical formulation techniques are well known to persons skilled in the art (see, e.g., 2005 Physicians' Desk Reference®, Thomson Healthcare: Montvale, N. J., 2004; Remington: The Science and Practice of Pharmacy, 20th ed., Gennaro et al., Eds. Lippincott Williams & Wilkins: Philadelphia, Pa., 2000). In particular, the pharmaceutical composition comprising the covalent complex of the invention may be formulated in lyophilized or stable liquid form. The polypeptide variant may be lyophilized by a variety of procedures known in the art. Lyophilized formulations are reconstituted prior to use by the addition of one or more pharmaceutically acceptable diluents such as sterile water for injection or sterile physiological saline solution.
Formulations of the composition are delivered to the individual by any pharmaceutically suitable means of administration. Various delivery systems are known and can be used to administer the composition by any convenient route. Preferentially, the compositions of the invention are administered systemically. For systemic use, the complex of the invention is formulated for parenteral (e.g. intravenous, subcutaneous, intramuscular, intraperitoneal, intracerebral, intrapulmonar, intranasal or transdermal) or enteral (e.g., oral, vaginal or rectal) delivery according to conventional methods. The most preferential routes of administration are intravenous and subcutaneous administration. The formulations can be administered continuously by infusion or by bolus injection. Some formulations encompass slow release systems.
The covalent complex of the present invention is administered to patients in a therapeutically effective dose, meaning a dose that is sufficient to produce the desired effects, preventing or lessening the severity or spread of the condition or indication being treated without reaching a dose which produces intolerable adverse side effects. The exact dose depends on many factors as e.g. the indication, formulation, mode of administration and has to be determined in preclinical and clinical trials for each respective indication.
The pharmaceutical composition of the invention may be administered alone or in conjunction with other therapeutic agents. These agents may be incorporated as part of the same pharmaceutical preparation.
A further aspect of the invention is a method of treating or preventing a bleeding disorder by administering an effective amount of a complex described above to a subject in need thereof. In another embodiment, the method comprises administering to the individual an efficient amount of a polynucleotide of the invention or of a plasmid or vector of the invention. Alternatively, the method may comprise administering to the individual an efficient amount of the host cells of the invention described herein.
The present invention will be further described in the following, non-limiting examples. This description of specific embodiments of the invention will be made in conjunction with the appended figures.
FIGS. 1A-1C: FIG. 1A, domain structure of mature FVIII protein; FIG. 1B domain structure of a B-domain deleted mature FVIII protein; FIG. 1C, domain structure of a B-domain deleted single-chain mature FVIII protein. The arrows show the PACE/Furin cleavage sites, the triangles the thrombin cleavage sites for activation.
FIGS. 2A and 2B: Domain structure of pro-VWF (FIG. 2A) and mature VWF (FIG. 2B) according to Zhou et al., 2012. VWF-dimerization and multimerization are not shown.
FIG. 3: Example of a covalent complex where Factor VIII and VWF are linked via a disulphide bridge. VWF domains are shown in grey, Factor VIII in white.
FIGS. 4A-4J: Examples of modified FVIII with VWF domains including the VWF CK domain. FVIII domains are shown in white, VWF domains are shown in grey. Black triangles show thrombin cleavage sites, open triangles show protease cleavage sites introduced into the linker.
FIGS. 5A-5E: Examples of modified FVIII with VWF domains including D′D3 domains. Arrows show PACE/Furin cleavage sites, black triangles show thrombin cleavage sites, open triangles show protease cleavage sites introduced into the linker.
FIGS. 6A-6C: FVIII modified by additional VWF domains. Symbols as explained above.
FIG. 7: Example of a covalent complex linked by chemical crosslinking.
FIGS. 8A and 8B: Western Blot of covalently linked FVIII-SC/VWF-FP molecules. M, molecular size marker. FIG. 8A, anti-FVIII, FIG. 8B, anti-VWF antibody blot.
FIG. 9: Separation of covalently linked FVIII-SC/VWF-FP molecules on a reducing SDS-PAGE after purification (lane 1) and subsequent thrombin cleavage (lane 2).
FIGS. 10A and 10B: Multimer gel analysis of a covalently linked FVIII-SC/VWF-FP multimer molecule by anti-VWF (FIG. 10A) and anti-FVIII (FIG. 10B) antibodies. Lane 1, plasma.derived VWF; lane 2 and 3, supernatant of two clones expressing covalently linked FVIII-SC/VWF-FP multimers; lane 4, rVWF-FP.
FIGS. 11A and 11B: Pharmacokinetic analysis of a covalently linked FVIII-SC/VWF-FP multimer (circles) in rats. FIG. 11A, FVIII data, FIG. 11B, VWF data.
FIGS. 12A-12N: Examples of constructs with both disulphide bridge and fusion of VWF to Factor VIII, optionally via a peptide linker.
SEQUENCE LISTING
SEQ ID NO: 1: cDNA sequence of human VWF
SEQ ID NO: 2: Protein sequence of human VWF
SEQ ID NO: 3: PCR primer VWF+
SEQ ID NO: 4: PCR primer VWF−
SEQ ID NO: 5: cDNA sequence of human FVIII
SEQ ID NO: 6: Protein sequence of mature human FVIII
SEQ ID NO: 7: Protein sequence of mature human serum albumin
SEQ ID NOs: 8-143: Various primers and oligonucleotides for mutagenesis as listed in the examples.
SEQ ID NOs: 144-177: Fusion protein sequences (DNA and protein) of human single chain FVIII with various VWF-CK comprising sequences, connected through various linkers.
EXAMPLES
Example 1
Generation of VWF Mutants with Cysteine Residues in the D′D3 Region
An expression plasmid (pIRESpuro3; BD Biosciences, Franklin Lakes, N.J., USA) containing a full length VWF cDNA sequence in its multiple cloning site had been generated previously (pVWF-2448). The VWF cDNA sequence contained in this vector is displayed as SEQ ID No. 1, its corresponding protein sequence as SEQ ID No. 2.
For generating such expression vectors, the VWF cDNA may be amplified by polymerase chain reaction (PCR) using primer set VWF+ and VWF− (SEQ ID NOs. 3 and 4) under standard conditions known to those skilled in the art (and as described e.g. in Current Protocols in Molecular Biology, Ausubel F M et al. (eds.) John Wiley & Sons, Inc.; http://www.currentprotocols.com/WileyCDA/) from a plasmid containing VWF cDNA (as obtainable commercially, e.g. pMT2-VWF from ATCC, No. 67122). The resulting PCR fragment may be digested by restriction endonuclease EcoRI and ligated into expression vector pIRESpuro3 which had been linearized by EcoRI. The resulting expression plasmid, screened for correct orientation of the insert, will contain a wild-type cDNA of VWF downstream of the CMV promoter suitable for VWF expression.
In order to introduce mutations into the VWF sequence site directed mutagenesis (QuickChange XL Site Directed Mutagenesis Kit, Agilent Technologies, La Jolla, Calif., USA) was applied on plasmid pVWF-2448 according to the following protocol as suggested by the kit manufacturer. Per mutagenesis reaction 5 μl of 10× reaction buffer, 1 μl of plasmid DNA pVWF-2448 (50 ng), 1 μl (10 pmol/μl) each of the respective two mutagenesis oligonucleotides, 1 μl dNTP Mix, 3 μl Quick-Solution, 1 μl Turbo Polymerase (2.5 U/μl) and 37 μl H2O were mixed and subjected to a polymerase chain reaction with an initial denaturation for 2 min at 95° C., 18 cycles of a) denaturation for 50 sec. at 95° C., b) annealing for 50 sec at 60° C. and c) elongation for 14 min at 68° C., followed by a single terminal elongation phase of 7 min at 68° C. Subsequently 1 μl of DpnI enzyme from the kit was added and the reaction incubated for another 60 min at 37° C. After that 3 μl of the mutagenesis reaction were transformed into E. coli competent cells (e.g. XL10 Gold, Agilent Technologies). Clones were isolated, plasmid DNA extracted and the mutations in the VWF sequences were verified by DNA sequencing.
The following table lists oligonucleotides used for mutagenesis of the VWF cDNA sequence and the respective mutations introduced.













VWF
Desig-
Mutagenesis oligonucleotide
SEQ


mutation
nation
sequence (5′→3′)
ID NO


















R768C
We4674
GTGTTCCCTGAGCTGCTGCCCTCCTATGGTCAAACTGG
89



We4675
CCAGTTTGACCATAGGAGGGCAGCAGCTCAGGGAACAC
90


 


R782C
We4218
CCCGCTGACAACCTGTGCGCTGAAGGGCTCGAGTG
8



We4219
CACTCGAGCCCTTCAGCGCACAGGTTGTCAGCGGG
9


 


G785C
We4226
CAACCTGCGGGCTGAATGCCTCGAGTGTACCAAAACG
10



We4227
CGTTTTGGTACACTCGAGGCATTCAGCCCGCAGGTTG
11


 


E787C
We4236
GGGCTGAAGGGCTCTGCTGTACCAAAACGTGCCAG
12



We4237
CTGGCACGTTTTGGTACAGCAGAGCCCTTCAGCCC
13


 


A789C
We4238
GGGCTCGAGTGTTGCAAAACGTGCCAGAACTATGAC
14



We4239
GTCATAGTTCTGGCACGTTTTGCAACACTCGAGCCC
15


 


T789C
We4238
GGGCTCGAGTGTTGCAAAACGTGCCAGAACTATGAC
14



We4239
GTCATAGTTCTGGCACGTTTTGCAACACTCGAGCCC
15


 


T791C
We4240
GGGCTCGAGTGTACCAAATGCTGCCAGAACTATGACCTG
16



We4241
CAGGTCATAGTTCTGGCAGCATTTGGTACACTCGAGCCC
17


 


Q793C
We4242
GAGTGTACCAAAACGTGCTGCAACTATGACCTGGAGTGC
18



We4243
GCACTCCAGGTCATAGTTGCAGCACGTTTTGGTACACTC
19


 


N794C
We4244
GTACCAAAACGTGCCAGTGCTATGACCTGGAGTGCATGAGC
20



We4245
GCTCATGCACTCCAGGTCATAGCACTGGCACGTTTTGGTAC
21


 


Y795C
We4246
GTACCAAAACGTGCCAGAACTGTGACCTGGAGTGCATGAGC
22



We4247
GCTCATGCACTCCAGGTCACAGTTCTGGCACGTTTTGGTAC
23


 


M800C
We4228
CTATGACCTGGAGTGCTGCAGCATGGGCTGTGTCTC
24



We4229
GAGACACAGCCCATGCTGCAGCACTCCAGGTCATAG
25


 


R816C
We4220
CCCCGGGCATGGTCTGCCATGAGAACAGATGTGTG
26



We4221
CACACATCTGTTCTCATGGCAGACCATGCCCGGGG
27


 


H817C
We4248
GGGCATGGTCCGGTGTGAGAACAGATGTGTGGCC
28



We4249
GGCCACACATCTGTTCTCACACCGGACCATGCCC
29


 


P828C
We4250
TGGCCCTGGAAAGGTGTTGCTGCTTCCATCAGGGC
30



We4251
GCCCTGATGGAAGCAGCAACACCTTTCCAGGGCCA
31


 


F830C
We4252
GAAAGGTGTCCCTGCTGCCATCAGGGCAAGGAG
32



We4253
CTCCTTGCCCTGATGGCAGCAGGGACACCTTTC
33


 


E835C
We4254
CTTCCATCAGGGCAAGTGCTATGCCCCTGGAGAAAC
34



We4255
GTTTCTCCAGGGGCATAGCACTTGCCCTGATGGAAG
35


 


P838C
We4256
GGGCAAGGAGTATGCCTGTGGAGAAACAGTGAAGATT
36



We4257
AATCTTCACTGTTTCTCCACAGGCATACTCCTTGCCC
37


 


D853C
We4258
CACTTGTGTCTGTCGGTGCCGGAAGTGGAACTGCAC
38



We4259
GTGCAGTTCCACTTCCGGCACCGACAGACACAAGTG
39


 


R854C
We4222
CTTGTGTCTGTCGGGACTGCAAGTGGAACTGCACAG
40



We4223
CTGTGCAGTTCCACTTGCAGTCCCGACAGACACAAG
41


 


K855C
We4260
CTGTCGGGACCGGTGCTGGAACTGCACAGACCATG
42



We4261
CATGGTCTGTGCAGTTCCAGCACCGGTCCCGACAG
43


 


W856C
We4262
CTGTCGGGACCGGAAGTGCAACTGCACAGACCATG
44



We4263
CATGGTCTGTGCAGTTGCACTTCCGGTCCCGACAG
45


 


D879C
We4230
CCACTACCTCACCTTCTGCGGGCTCAAATACCTGTTCC
46



We4231
GGAACAGGTATTTGAGCCCGCAGAAGGTGAGGTAGTGG
47


 


R924C
We4224
CCTCAGTGAAATGCAAGAAATGCGTCACCATCCTGGTGG
48



We4225
CCACCAGGATGGTGACGCATTTCTTGCATTTCACTGAGG
49


 


E933C
We4435
GTCGAGGGCGGCTGCATCGAACTGTTCGACGGC
143



We4436
GCCGTCGAACAGTTCGATGCAGCCGCCCTCGAC
91


 


T951C
We4447
GGCCTATGAAGGACGAATGCCATTTCGAGGTGGTCGAG
92



We4448
CTCGACCACCTCGAAATGGCATTCGTCCTTCATAGGCC
93


 


L984C
We4469
CCTGTCCATTAGTGTGGTGTGCAAACAGACCTATCAGGAAAAAGTCTG
94



We4470
CAGACTTTTTCCTGATAGGTCTGTTTGCACACCACACTAATGGACAGG
95


 


E1015C
We4485
CTAGCAACCTGCAGGTCTGCGAGGACCCCGTGG
96



We4486
CCACGGGGTCCTCGCAGACCTGCAGGTTGCTAG
97


 


Q1053C
We4232
CTGCCATAACAACATCATGAAGTGCACGATGGTGGATTCCTCCTG
50



We4233
CAGGAGGAATCCACCATCGTGCACTTCATGATGTTGTTATGGCAG
51


 


D1076
We4600
GGATTGCAACAAACTGGTCTGCCCTGAACCTTACCTGGACG
98



We4601
CGTCCAGGTAAGGTTCAGGGCAGACCAGTTTGTTGCAATCC
99


 


E1078C
We4234
CAACAAGCTGGTGGACCCCTGCCCATATCTGGATGTCTGC
52



We4235
GCAGACATCCAGATATGGGCAGGGGTCCACCAGCTTGTTG
53


 


P1079C
We4604
CAACAAACTGGTCGATCCTGAATGCTACCTGGACGTGTGTATCTAC
100



We4605
GTAGATACACACGTCCAGGTAGCATTCAGGATCGACCAGTTTGTTG
101


 


K1116C
We4519
GCGCTCAGCACGGATGCGTCGTGACATGGCGC
102



We4520
GCGCCATGTCACGACGCATCCGTGCTGAGCGC
103


 


N1134C
We4525
CCTGCGAGGAACGGTGCCTGCGCGAGAATGGC
104



We4526
GCCATTCTCGCGCAGGCACCGTTCCTCGCAGG
105


 


E1161C
We4531
CACATGCCAGCATCCCTGCCCCCTGGCTTGTCC
106



We4532
GGACAAGCCAGGGGGCAGGGATGCTGGCATGTG
107


 


R1204C
We4539
CGAAGTGGCCGGCTGCAGATTCGCCTCCGGC
108



We4540
GCCGGAGGCGAATCTGCAGCCGGCCACTTCG
109









Using the protocols and plasmids described above and by applying molecular biology techniques known to those skilled in the art (and as described e.g. in Current Protocols in Molecular Biology, ibid) other constructs can be made by the artisan for mutation of any amino acid residue within SEQ ID No. 2.
As the half-life extending principle in these examples albumin fusion to VWF has been chosen. This is indicated by the suffix -FP.
To generate albumin fusions of VWF and VWF mutants, insertion of linker and albumin cDNA sequences was performed in analogy to the examples described in WO 2009/156137.
For generation of an expression cassette containing a VWF mutant which does not contain the propeptide sequence a mutagenesis as described above is performed using primers with SEQ ID 54 and 55.
This will result in a VWF sequence wherein the signal peptide (amino acids 1 to 22 of SEQ ID no. 2) is fused directly to the D′ region (amino acid 764 of SEQ ID no. 2).
The following table lists residues that were interchanged with cysteine in VWF D′D3 domain in a scattered approach:










Cystein residues in human von Willebrand Factor


















S
764



R
768



P
770



K
773



N
780



R
782



G
785



E
787



T
789



T
791



Q
793



N
794



Y
795



M
800



S
801



M
802



G
813



R
816



H
817



E
818



L
824



P
828



F
830



Q
832



E
835



P
838



T
841



K
843



D
853



R
854



K
855



W
856



I
870



A
873



L
876



D
879



K
882



F
885



V
892



Q
895



P
902



F
905



L
908



N
911



S
918



R
924



I
927



E
930



E
933



L
936



G
939



N
942



R
945



K
948



T
951



E
954



E
957



R
960



I
963



L
966



A
969



V
972



D
975



L
978



S
981



L
984



T
987



E
990



D
1000



Q
1003



D
1006



S
1009



L
1012



E
1015



P
1018



F
1021



S
1024



V
1027



R
1035



L
1039



A
1042



I
1050



Q
1053



V
1056



T
1064



D
1067



V
1075



D
1076



P
1077



E
1078



P
1079



Y
1080



L
1081



I
1094



A
1105



A
1108



K
1116



W
1120



A
1123



N
1134



N
1138



R
1145



E
1161



K
1181



E
1185



P
1193



R
1204



S
1208



T
1213



S
1217



V
1230



G
1241










Example 2
Generation of FVIII Mutants with Cysteine Residues in the a3 Domain
Any FVIII cDNA sequence cloned in an expression plasmid can be used to introduce Cys mutations into the a3 domain. Preferably a single-chain FVIII construct with partial B domain depletion is used (see examples in WO 2004/067566).
For generating FVIII expression vectors, the FVIII cDNA may be amplified by polymerase chain reaction (PCR) using primer set of SEQ ID NO 56 and 57 under standard conditions known to those skilled in the art (and as described e.g. in Current Protocols in Molecular Biology, Ausubel F M et al. (eds.) John Wiley & Sons, Inc.; http://www.currentprotocols.com/WileyCDA/) from a plasmid containing FVIII cDNA.
The resulting PCR fragment is digested by restriction endonucleases NheI and NotI and ligated into expression vector pIRESpuro3 (BD Biosciences, Franklin Lakes, N.J., USA) which had been linearized by NheI and NotI. The resulting expression plasmid will contain a cDNA of FVIII downstream of the CMV promoter and is suitable for FVIII expression in animal cell culture.
In order to introduce mutations into the FVIII sequence site directed mutagenesis (QuickChange XL Site Directed Mutagenesis Kit, Agilent Technologies, La Jolla, Calif., USA) is applied on the FVIII expression plasmid as suggested by the kit manufacturer.
The following table lists the oligonucleotides used for mutagenesis of the FVIII cDNA sequence and the respective mutations introduced.













FVIII
Desig-
Mutagenesis oligonucleotide
SEQ


mutation
nation
sequence (5′→3′)
ID NO


















T1654C
We4630
GCCACCACAATTCCAGAAAATACTTGCCTTCAGTCAGATCAAGAGG
110



We4631
CCTCTTGATCTGACTGAAGGCAAGTATTTTCTGGAATTGTGGTGGC
111


 


Q1656C
We4634
CACAATTCCAGAAAATACTACTCTTTGCTCAGATCAAGAGGAAATTGAC
112



We4635
GTCAATTTCCTCTTGATCTGAGCAAAGAGTAGTATTTTCTGGAATTGTG
113


 


D1658C
We4196
CTACTCTTCAGTCATGTCAAGAGGAAATTGACTATGATGATACC
58



We4197
GGTATCATCATAGTCAATTTCCTCTTGACATGACTGAAGAGTAG
59


 


E1660C
We4640
CTACTCTTCAGTCAGATCAATGCGAAATTGACTATGATGATACCATATC
114



We4641
GATATGGTATCATCATAGTCAATTTCGCATTGATCTGACTGAAGAGTAG
115


 


D1663C
We4198
CAGTCAGATCAAGAGGAAATTTGCTATGATGATACCATATCAGTTG
60



We4199
CAACTGATATGGTATCATCATAGCAAATTTCCTCTTGATCTGACTG
61


 


Y1664C
We4200
GATCAAGAGGAAATTGACTGTGATGATACCATATCAGTTGAAATG
62



We4201
CATTTCAACTGATATGGTATCATCACAGTCAATTTCCTCTTGATC
63


 


D1665C
We4202
GATCAAGAGGAAATTGACTATTGTGATACCATATCAGTTGAAATGAAGAAGG
64



We4203
CCTTCTTCATTTCAACTGATATGGTATCACAATAGTCAATTTCCTCTTGATC
65


 


D1666C
We4204
GATCAAGAGGAAATTGACTATGATTGTACCATATCAGTTGAAATGAAGAAGG
66



We4205
CCTTCTTCATTTCAACTGATATGGTACAATCATAGTCAATTTCCTCTTGATC
67


 


S1669C
We4650
GAAATTGACTATGATGATACCATATGCGTTGAAATGAAGAAGGAAGATTTTG
116



We4651
CAAAATCTTCCTTCTTCATTTCAACGCATATGGTATCATCATAGTCAATTTC
117


 


V1670C
We4652
GACTATGATGATACCATATCATGCGAAATGAAGAAGGAAGATTTTGAC
118



We4653
GTCAAAATCTTCCTTCTTCATTTCGCATGATATGGTATCATCATAGTC
119


 


E1671C
We4206
TGACTATGATGATACCATATCAGTTTGCATGAAGAAGGAAGATTTTGACATTTATG
68



We4207
CATAAATGTCAAAATCTTCCTTCTTCATGCAAACTGATATGGTATCATCATAGTCA
69


 


M1672C
We4608
GATGATACCATATCAGTTGAATGCAAGAAGGAAGATTTTGACATTTATG
120



We4609
CATAAATGTCAAAATCTTCCTTCTTGCATTCAACTGATATGGTATCATC
121


 


K1673C
We4610
GATACCATATCAGTTGAAATGTGCAAGGAAGATTTTGACATTTATGATG
122



We4611
CATCATAAATGTCAAAATCTTCCTTGCACATTTCAACTGATATGGTATC
123


 


K1674C
We4612
CCATATCAGTTGAAATGAAGTGCGAAGATTTTGACATTTATGATGAGGATG
124



We4613
CATCCTCATCATAAATGTCAAAATCTTCGCACTTCATTTCAACTGATATGG
125


 


E1675C
We4208
GATGATACCATATCAGTTGAAATGAAGAAGTGCGATTTTGACATTTATGATGAGG
70



We4209
CCTCATCATAAATGTCAAAATCGCACTTCTTCATTTCAACTGATATGGTATCATC
71


 


D1676C
We4210
GATACCATATCAGTTGAAATGAAGAAGGAATGTTTTGACATTTATGATGAGGATG
72



We4211
CATCCTCATCATAAATGTCAAAACATTCCTTCTTCATTTCAACTGATATGGTATC
73


 


F1677C
We4614
CAGTTGAAATGAAGAAGGAAGATTGCGACATTTATGATGAGGATGAAAATCAG
126



We4615
CTGATTTTCATCCTCATCATAAATGTCGCAATCTTCCTTCTTCATTTCAACTG
127


 


D1678C
We4212
GAAATGAAGAAGGAAGATTTTTGCATTTATGATGAGGATGAAAATCAGAGCCC
74



We4213
GGGCTCTGATTTTCATCCTCATCATAAATGCAAAAATCTTCCTTCTTCATTTC
75


 


I1679C
We4294
GAAATGAAGAAGGAAGATTTTGACTGTTATGATGAGGATGAAAATCAGAGCCC
76



We4295
GGGCTCTGATTTTCATCCTCATCATAACAGTCAAAATCTTCCTTCTTCATTTC
77


 


Y1680C
We4214
GAAGAAGGAAGATTTTGACATTTGCGATGAGGATGAAAATCAGAGCC
78



We4215
GGCTCTGATTTTCATCCTCATCGCAAATGTCAAAATCTTCCTTCTTC
79


 


D1681C
We4616
GAAGAAGGAAGATTTTGACATTTATTGCGAGGATGAAAATCAGAGCCCCC
128



We4617
GGGGGCTCTGATTTTCATCCTCGCAATAAATGTCAAAATCTTCCTTCTTC
129


 


E1682C
We4216
GGAAGATTTTGACATTTATGATTGCGATGAAAATCAGAGCCCCCGCAG
80



We4217
CTGCGGGGGCTCTGATTTTCATCGCAATCATAAATGTCAAAATCTTCC
81


 


D1683C
We4618
GGAAGATTTTGACATTTATGATGAGTGCGAAAATCAGAGCCCCCGCAG
130



We4619
CTGCGGGGGCTCTGATTTTCGCACTCATCATAAATGTCAAAATCTTCC
131


 


E1684C
We4620
GGAAGATTTTGACATTTATGATGAGTGCGAAAATCAGAGCCCCCGCAG
132



We4621
CTGCGGGGGCTCTGATTTTCGCACTCATCATAAATGTCAAAATCTTCC
133


 


N1685C
We4622
GGAAGATTTTGACATTTATGATGAGGATGAATGCCAGAGCCCCCGCAG
134



We4623
CTGCGGGGGCTCTGGCATTCATCCTCATCATAAATGTCAAAATCTTCC
135


 


Q1686C
We4624
GAAGATTTTGACATTTATGATGAGGATGAAAATTGCAGCCCCCGCAGC
136



We4625
GCTGCGGGGGCTGCAATTTTCATCCTCATCATAAATGTCAAAATCTTC
137


 


S1687C
We4654
CATTTATGATGAGGATGAAAATCAGTGCCCCCGCAGCTTTCAAAAG
138



We4655
CTTTTGAAAGCTGCGGGGGCACTGATTTTCATCCTCATCATAAATG
139


 


P1688C
We4656
TGATGAGGATGAAAATCAGAGCTGCCGCAGCTTTCAAAAGAAAACACG
140



We4657
CGTGTTTTCTTTTGAAAGCTGCGGCAGCTCTGATTTTCATCCTCATCA
141









Using the protocols and plasmids described above and in WO 2004/067566 by applying molecular biology techniques known to those skilled in the art (and as described e.g. in Current Protocols in Molecular Biology, ibid) any other constructs can be made by the artisan for mutation of any other amino acid residue within the a3 domain of FVIII.
The following table lists residues interchanged with cysteine in Factor VIII a3, C1 and C2 domains.










Cystein residues in Factor VIII SingleChain


















T
1653



T
1654



L
1655



Q
1656



S
1657



D
1658



Q
1659



E
1660



E
1661



I
1662



D
1663



Y
1664



D
1665



D
1666



T
1667



I
1668



S
1669



V
1670



E
1671



M
1672



K
1673



K
1674



E
1675



D
1676



F
1677



D
1678



I
1679



Y
1680



D
1681



E
1682



D
1683



E
1684



N
1685



Q
1686



S
1687



P
1688



R
1689



I
2098



S
2119



N
2129



R
2150



P
2153



W
2229



Q
2246










Example 3
Generation of Expression Vectors for FVIII Molecules with VWF-Derived C-Terminal Extensions
FVIII molecules with VWF domains or fragments added to its carboxyterminus were generated by molecular biology methods known to those skilled in the art. These were used to cotransfect with VWF-FP to generate heterodimers containing modified FVIII and VWF-FP which were covalently linked via the CK domains at the C-terminus of both proteins.









For that FVIII cDNA was amplified by primers



We4323



(SEQ ID NO: 82)



GTGGCTAGCGCATGGAAATAGAGCTCTCCAC



 



We4324



(SEQ ID NO: 83)



CACGCGGCCGCGTTACCGGTGTAGAGGTCCTGTGCCTCGC






and the resulting PCR fragment was inserted into a suitable expression vector, e.g. pIRESpuro3 (ibid) opened by NheI and NotI. Through the resulting AgeI and NotI sites the coding sequence of the VWF-derived C-terminal domains C3-C4-C5-C6-CK (VWF amino acids 2400 to 2813), C5-C6-CK (VWF amino acids 2544 to 2813) or of the CK domain alone (VWF amino acids 2724 to 2813) that had been amplified by PCR using primer pairs










We4264



(SEQ ID NO: 84)



GTGACCGGTAACTCCACAGTGAGCTGTCCC



 



We4267



(SEQ ID NO: 85)



ACAGCGGCCGCTATCACTTGCTGCACTTCCTGG



and



 



We4265



(SEQ ID NO: 142)



GTGACCGGTCAAAGGAACGTCTCCTGCCC



 



We4267



(SEQ ID NO: 85)



ACAGCGGCCGCTATCACTTGCTGCACTTCCTGG



and



 



We4266



(SEQ ID NO: 86)



GTGACCGGTTGCAACGACATCACTGCCAG



 



We4267



(SEQ ID NO: 85)



ACAGCGGCCGCTATCACTTGCTGCACTTCCTGG,






respectively, were inserted. This resulted in expression vectors containing FVIII cDNA with C-terminal extensions by VWF C-terminal domains C3-C4-C5-C6-CK, C5-C6-CK or CK, respectively.

Into the AgeI restriction site cleavable linker sequences were introduced which would release the FVIII from the VWF-FP during FVIII activation. The linker sequences were chosen from sequences surrounding one of the thrombin cleavage sites of FVIII, but any other thrombin cleavage site could be used as well (e.g. as described in WO 03/035861). As an example thrombin cleavage sites 372 and 1689 are represented by the following cDNA sequences:







CS372 (SEQ ID NO: 87):


5′ACCGGTGATGACAACTCTCCTTCCTTTATCCAAATTCGCTCAGTTG


CCAAGAAGCATCCTAAAACTTGGACCGGT3′


 


CS1689 (SEQ ID NO: 88):


5′ACCGGTGATGAGGATGAAAATCAGAGCCCCCGCAGCTTTCAAAAGA


AAACACGACACTATTTTATTGCTGCAGTGGAGAGGCTCTGGACCGGT3′






These sequences can be amplified by suitable PCR primers containing AgeI restriction sites at their termini. PCR fragments are then cleaved by AgeI and inserted into AgeI opened expression vectors as described above.
Similar approaches can be used by the artisan to construct expression plasmids containing FVIII cDNA molecules where its B domain or parts of it have been replaced by the VWF D′D3 region or where the VWF D′D3 region is connected directly or via a linker to the N-terminus or C-terminus of FVIII.
Example 4
Transfection of Plasmids for Stable Expression of VWF Mutants in CHO Cells
Expression plasmids based on pIRESneo3 were grown up in XL10 Gold (Agilent Technologies) and purified using standard protocols (Qiagen, Hilden, Germany).
CHO cells, preferably CHO-K1, were transfected using standard methods, for example nucleofection or lipofection, and single clones expressing the desired VWF-FP mutant were selected.
For proper VWF propeptide cleavage an expression plasmid encoding protease furin (NM002569.2) is cotransfected together with the VWF plasmid in a molar ratio of 1:4 (furin:VWF mutant).
Example 5
Transfection of CHO Cells Expressing VWF-FP Mutants and Transient Expression of FVIII Mutants
FVIII mutant expression plasmids were purified as described above. Transient transfections into the stable VWF-FP mutant CHO clones (example 4) were conducted according to standard methods.
Harvest of transient transfections was performed by centrifugation to separate the cells from supernatant. Aliquots of the supernatant were generated and the recombinant product was characterized.
The following table describes representative results from transient transfections of FVIII mutant expression plasmids (column 1) into CHO cells stably expressing VWF-FP mutants (column 2). The results have been selected so that the ratio of covalently linked FVIII antigen to total FVIII activity (column 7) or the ratio of covalently linked FVIII antigen to total FVIII antigen (column 8) are equal to or greater than 1.0, which we have used as the selection criteria for the most preferred mutant combinations.
The amount of covalently linked FVIII antigen has been determined by the assay described in example 6, FVIII and VWF activity and antigen by assays as described in examples 9 and 10.
























ratio
ratio



Cys
Cys




covalent
covalent
ratio FVIII


residue at
residue at
covalent
FVIII
FVIII
VWF
FVIII/
FVIII/Total 
activity/


FVIII aa
VWF aa
FVIII
activity
antigen
antigen
Total FVIII
FVIII
FVIII


position
position
[amU/ml]1
[mU/ml]
[mU/ml]
[mU/ml]
activity
antigen
antigen























1654
1079
409
257
421
12
1.59
0.97
0.61


1654
1134
424
371
495
56
1.14
0.85
0.75


1656
1134
435
981
436
66
0.44
1.00
2.25


1677
1116
1076
649
1361
1208
1.66
0.79
0.48


1679
1079
398
316
349
12
1.26
1.14
0.91


1679
1116
992
889
1171
1400
1.12
0.85
0.76


1681
768
87
58
56
71
1.50
1.55
1.04


1681
1116
1440
2414
646
1405
0.60
2.23
3.74


1682
768
328
156
147
93
2.11
2.23
1.06


1682
1116
488
1424
397
1575
0.34
1.23
3.59


1683
768
2209
543
721
86
4.07
3.07
0.75


1683
1116
1346
3190
767
1475
0.42
1.76
4.16


1684
768
491
467
711
63
1.05
0.69
0.66


1684
1116
1150
2996
752
1548
0.38
1.53
3.98


1684
1134
741
844
236
63
0.88
3.15
3.58


1686
768
506
490
997
75
1.03
0.51
0.49


1686
1015
1639
1360
2568
331
1.21
0.64
0.53


1686
1116
2744
3180
523
1484
0.86
5.24
6.08


1686
1134
693
914
128
71
0.76
5.43
7.16


1687
768
390
271
797
77
1.44
0.49
0.34


1687
1134
843
804
411
65
1.05
2.05
1.95


1688
768
2058
110
968
69
18.75
2.13
0.11


1688
817
367
194
1279
1636
1.89
0.29
0.15


1688
984
1904
777
1974
438
2.45
0.96
0.39


1688
1015
1083
680
2053
390
1.59
0.53
0.33


1688
1116
666
1083
353
1654
0.61
1.89
3.07


1688
1134
650
348
106
62
1.87
6.11
3.27


2129
817
292
285
898
1789
1.02
0.33
0.32





1arbitrary milli-Unit per ml






Example 6
Detection of FVIII Mutants Covalently Attached to VWF Mutants by Elisa
Cell culture supernatant samples (10 ml) from transient transfections were concentrated with Amicon Ultracell-30K (Millipore UFC903024; 3000 g centrifugation). FVIII covalently attached to VWF-FP in culture supernatant (concentrates) was determined by a standard ELISA. Briefly, microplates were incubated with 100 μL per well of the capture antibody (rabbit anti human VWF-IgG, Dako A0082 [Dako, Hamburg, Germany], diluted 1:2000 in buffer A [Sigma C3041, Sigma-Aldrich, Munich, Germany]) overnight at ambient temperature. After washing plates three times with buffer B (Sigma T9039), each well was incubated with 200 μL buffer C (Sigma T6789) for 1.5 hours at ambient temperature (blocking). After another three wash steps with buffer B, serial dilutions of the test sample in buffer B as well as serial dilutions of a control preparation of covalently linked FVIII-VWF-FP, (2.0-0.03 arbitrary U/ml in buffer B (we call these “arbitrary units” as they may not correspond to the standard FVIII units as determined using Standard Human Plasma); volumes per well: 100 μL) were incubated for 1.5 hours at ambient temperature. After three wash steps with buffer B, 200 μL of 350 mM CaCl2 were added to each well and incubated for 1 hour at ambient temperature. CaCl2 was removed (without washing) and additional 200 μl were added to each well and incubated further for 1 hour. After three wash steps with buffer B 100 μL of a 1:2 dilution in buffer B of the detection antibody (Detecting Antibody for FVIII:C, peroxidase labelled, Cedarlane CL20035K-D) were added to each well and incubated for 1 hour at ambient temperature. After three wash steps with buffer B, 100 μL of substrate solution (OUVF, Siemens Healthcare Diagnostics) were added per well and incubated for 15 minutes at ambient temperature in the dark. Addition of 100 μL undiluted stop dilution (OSFA, Siemens Healthcare Diagnostics) prepared the samples for reading in a suitable microplate reader at 450 nm wavelength. Concentrations of the test samples were then calculated using the standard curve with the control preparation.
Example 7
Detection of FVIII Mutants Covalently Attached to VWF Mutants by Western Blot and Coomassie Stain
Alternatively covalent complexes were detected by staining or Western blotting. Samples were examined with denaturing SDS-PAGE under reducing or non-reducing conditions and subsequent Western blot. For the detection of FVIII, an in house murine anti-FVIII monoclonal antibody mix followed by an alkaline phosphatase coupled secondary anti-mouse antibody (Invitrogen) and for VWF detection an HRP labeled polyclonal rabbit anti-human VWF (Fa. Dako P0226) antibody were used.
FIGS. 8A and 8B show the Western blot analysis of FVIII (FVIII-SingleChain) covalently linked to rVWF-FP dimers by the two principles described above from a non-reduced SDS-PAGE. FIG. 8A has been detected using anti-FVIII antibodies, FIG. 8B using anti-VWF antibodies. Lane 1 represents material linked where the FVIII moiety is linked to a VWF-FP dimer by a VWF derived C3-C4-C5-C6-CK sequence added to its C-terminus and an additional thrombin cleavage site between FVIII and the C3-C4-C5-C6-CK sequence. It had a ratio of covalent FVIII as measured by the specific Elisa described in example 8 to total FVIII activity of 5.78 and to total FVIII antigen of 7.47. High molecular weight bands above 460 kDa are visualized by both anti-FVIII and anti-VWF antibodies and demonstrate the presence of covalently linked FVIII-VWF-FP complexes. M denotes the molecular size marker. Lanes 2 and 3 represent control preparations of FVIII-SC and VWF-FP, respectively.
Lanes 4 and 5 represent covalent complexes linked through disulfide bridges between FVIII a3 and VWF-FP D3 domains by respective Cys mutations. Lane 4 represents FVIII-SC I1679C mutant on VWF-FP E1078C mutant. Lane 5 represents FVIII-SC I1675C mutant on VWF-FP E1078C mutant. Lane 6 is a control preparation only containing VWF-FP mutant E1078C. The blot demonstrates the presence of high molecular weight FVIII-VWF-FP complexes covalently linked to each other besides free FVIII molecules.
FIG. 9 shows a reduced SDS-PAGE stained with Gelcode Blue Stain reagent. Lane 1 contains a purified FVIII (FVIII-SingleChain) covalently linked to a rVWF-FP dimer, lane 2 shows the same preparation after thrombin digest releasing the covalently linked FVIII moiety in the linker sequence while in parallel activating FVIII. The bands in lane 1 represent the covalent complex and FVIII dimers, the prominent band in lane 2 between the 268 and 460 kDa markers represents the VWF-FP moiety, while the bands in the below 71 KDa range represent FVIII fragments.
Example 8
Chemical Crosslinking of FVIII to VWF
FVIII is reacted in an aqueous buffer solution containing preferably physiological NaCl and CaCl2 concentrations at a constant temperature of preferably between 4° C. and 37° C. with a bi-specific bis-succinimide ester (PEG)n with a molecular weight of between 500 Da and 100 kDa in a molar ratio of FVIII and cross-linker of 2:1 to 1:1000 (preferred about 1:1). The FVIII concentration is preferably low to minimize cross-linking of FVIII with itself. After a period of 1 min to 60 min a half-life extended VWF is added to the FVIII solution in a molar excess of 2:1 to 200:1 based on the monomer building units of VWF. After an incubation period of 1 to 300 min at the temperature given above the residual reagent is quenched using preferably a low molecular weight compound containing a primary amino group and the covalent complex of FVIII and VWF is purified by methods known to the expert in the field, removing non-reacted FVIII or oligomers of FVIII and non-reacted VWF. The reaction times and temperatures for the different incubation steps are optimized by methods known to the expert in the field, e.g. by using SDS-PAGE/Western blot analysis with anti-FVIII or anti-VWF antibodies with the goal to maximize the content of the desired covalent complex and to minimize the content of side products.
Different reagents can be used for the chemical cross-linking of modified FVIII and VWF molecules. They are based on the cross-linking of different reactive groups of FVIII and VWF:

    
    
        a) Amine-to-Amine cross-linkers (e.g. bis-Imidoester(PEG)n or bis-succinimide ester(PEG)n)
        b) Carboxyl-to-Carboxyl cross-linkers
        c) Sufhydryl-to-Sulfhydryl cross-linkers (e.g. bis-maleimide(PEG)n)
        d) Carbohydrate-to-Carbohydrate cross-linkers
        e) Amine-to-Sulfhydryl cross-linkers
        f) Sulfhydryl-to-Carbohydrate cross-linkers
        g) Sulfhydryl-to-Hydroxyl cross-linkers
        h) Carboxyl-to-Amine cross-linkers
    
    


Example 9
Analysis of Factor VIII Activity and Antigen
For activity determination of FVIII:C in vitro either a clotting assay (e.g. Pathromtin SL reagent and FVIII deficient plasma delivered by Dade Behring, Germany) or a chromogenic assay (e.g. Coamatic FVIII:C assay delivered by Haemochrom) are used. The assays are performed according to the manufacturers' instructions.
FVIII antigen (FVIII:Ag) is determined by a standard ELISA. Briefly, microplates are incubated with 100 μL per well of the capture antibody (sheep anti-human FVIII IgG, Cedarlane CL20035K-C, diluted 1:200 in Buffer A [Sigma C3041]) for 2 hours at ambient temperature. After washing plates three times with buffer B (Sigma P3563), serial dilutions of the test sample in sample diluent buffer (Cedarlane) as well as serial dilutions of a FVIII preparation (CSL Behring; 200-2 mU/mL) in sample diluent buffer (volumes per well: 100 μL) are incubated for two hours at ambient temperature. After three wash steps with buffer B, 100 μL of a 1:2 dilution in buffer B of the detection antibody (sheep anti-human FVIII IgG, Cedarlane CL20035K-D, peroxidase labelled) are added to each well and incubated for another hour at ambient temperature. After three wash steps with buffer B, 100 μL of substrate solution (1:10 (v/v) TMB OUVF:TMB Buffer OUVG, Dade Behring) are added per well and incubated for 30 minutes at ambient temperature in the dark. Addition of 100 μL stop solution (Dade Behring, OSFA) prepares the samples for reading in a suitable microplate reader at 450 nm wavelength. Concentrations of test samples are then calculated using the standard curve with the FVIII preparation as reference.
Example 10
Analysis of VWF Activity and Antigen
Samples are analysed by immunoturbidimetric determination of VWF:Ag (OPAB03, Siemens Healthcare Diagnostics, Marburg, Germany) and for collagen binding (Technozym VWF:CBA ELISA, Ref. 5450301 with calibrator set 5450310 and control set 5450312, Technoclone, Vienna, Austria) as described by the manufacturer.
VWF:RCo testing is done using the BC VWF reagent of Siemens Healthcare Diagnostics, Marburg, Germany according to the manufacturer's description. The International Concentrate Standard is used as a primary standard preparation to calibrate an in-house standard preparation for day to day use.
For pharmacokinetic analyses VWF antigen is determined by a standard ELISA. Briefly, microplates are incubated with 100 μL per well of the capture antibody (rabbit anti human vWF-IgG, Dako A0082 [Dako, Hamburg, Germany], diluted 1:2000 in buffer A [Sigma C3041, Sigma-Aldrich, Munich, Germany]) overnight at ambient temperature. After washing plates three times with buffer B (Sigma P3563), each well is incubated with 200 μL buffer C (Sigma P3688) for 1.5 hours at ambient temperature (blocking). After another three wash steps with buffer B, serial dilutions of the test sample in buffer B as well as serial dilutions of standard human plasma (ORKL21; 20-0.2 mU/mL; Siemens Healthcare Diagnostics, Marburg, Germany) in buffer B (volumes per well: 100 μL) are incubated for 1.5 hours at ambient temperature. After three wash steps with buffer B, 100 μL of a 1:16000 dilution in buffer B of the detection antibody (rabbit anti human vWF-IgG, Dako P0226, peroxidase labelled) are added to each well and incubated for 1 hour at ambient temperature. After three wash steps with buffer B, 100 μL of substrate solution (OUVF, Siemens Healthcare Diagnostics) are added per well and incubated for 30 minutes at ambient temperature in the dark. Addition of 100 μL undiluted stop dilution (OSFA, Siemens Healthcare Diagnostics) prepares the samples for reading in a suitable microplate reader at 450 nm wavelength. Concentrations of the test samples are then calculated using the standard curve with standard human plasma as reference.
Example 11
VWF Multimer Analysis
VWF multimer analysis was performed by SDS-agarose gel electrophoresis as recently described (Tatewaki et al., Thromb. Res. 52: 23-32 (1988), and Metzner et al., Haemophilia 4 (Suppl. 3): 25-32 (1998)) with minor modifications. Briefly, after equilibration in running buffer ready to use 1% agarose mini gels (BioRad) were used to standardize the method as far as possible. Comparable amounts of VWF antigen were subjected to electrophoresis on the SDS-agarose gels. After Western blotting the protein bands were detected using anti-VWF, anti-FVIII or anti-albumin antibodies followed by alkaline phosphatase labelled anti-IgG antibodies (SIGMA, prod. No. 1305) and colour reaction quantified by densitometry.
Two preparations of covalent FVIII-SC/VWF-FP multimer complexes were analysed by multimer gel analysis. Lanes 2 and 3 of FIGS. 10A and 10B represent material wherein the FVIII moiety is linked to a VWF-FP multimer by a VWF derived C3-C4-C5-C6-CK sequence added to its C-terminus with an additional thrombin cleavage site between FVIII and the C3-C4-C5-C6-CK sequence (example 3). Lane 1 represents plasma-derived VWF, lane 4 VWF-FP. The results demonstrate that covalent FVIII/VWF-FP complexes do multimerize to an extent similar to VWF-FP or natural VWF. Additional bands represent the addition of one or more covalent FVIII molecules. Most multimer bands detected by anti-VWF antibodies (FIG. 10A) can also be stained by anti-FVIII (FIG. 10B), demonstrating covalent FVIII/VWF-FP multimers.
Example 12
Purification of Covalently Linked FVIII/VWF-FP Complexes
Cell culture supernatants containing covalently linked FVIII/VWF-FP dimer complexes are sterile-filtered through a 0.2 μm filter and concentrated with a 30 kDa UF unit (CentramateTM, Pall) up to 20-fold. Cell culture supernatants containing covalently linked FVIII/VWF-FP multimer complexes are sterile-filtered through a 0.2 μm filter and concentrated with a CadenceTM Single-Use Inline Concentrator (30 kDa cut-off, Pall). This material is then applied to a Human Albumin Capture Select column (BAC) equilibrated with equilibration buffer (EB, 20 mM Tris pH 7.0). The column is washed with EB and FVIII/VWF-FP complexes are eluted with 2M MgCl2 in EB. The elution peak is pooled and dialysed against running buffer of the SEC HiPrep Sephacryl S-500 High Resolution (GE Healthcare) containing 50 mM HEPES, 400 mM CaCl2, 50 mM NaCl, pH 7, as described by McCue et al., 2009; J. Chrom. A, 1216(45): 7824-30 with minor modification). This material is then applied to a preequilibrated SEC HiPrep Sephacryl S-500 High Resolution (GE Healthcare) and after separating by size only the fractions containing the covalently linked FVIII/VWF-FP were pooled and SEC HiPrep Sephacryl S-500 High Resolution (GE Healthcare). This pool is dialysed against 1.7 mM CaCl2, 10 mM L-His, 308 mM NaCl, 8.76 mM saccharose, 0.01% Tween 80, pH 7. Finally the material is frozen in aliquots.
Alternatively for certain constructs the VIIISelect column (GE Healthcare) may provide better purification results than the Human Albumin Capture Select Column. In such case, the cell culture supernatant concentrate is applied to a preequilibrated VIIISelect column (GE Healthcare) and after washing with equilibration buffer (10 mM HEPES, 5 mM CaCl2, 150 mM NaCl, 0.03% Tween80 pH 7), it is followed by equilibration buffer with a high salt concentration (1 M NaCl) and then again by equilibration buffer. The FVIII/VWF-FP complexes are eluted with 20 mM L-His, 5 mM CaCl2, 150 mM NaCl, 60% ethylene glycol, 0.03% Tween 80, pH 7. The elution peak is pooled and dialysed against the running buffer of the subsequent SEC column, containing 50 mM HEPES, 400 mM CaCl2, 50 mM NaCl, pH 7. This material is then applied to a preequilibrated SEC HiPrep Sephacryl S-500 High Resolution (GE Healthcare) column. Fractions containing the covalently linked FVIII/VWF-FP are pooled. This pool is dialysed against 1.7 mM CaCl2, 10 mM L-His, 308 mM NaCl, 8.76 mM saccharose, 0.01% Tween 80, pH 7. Finally the material is frozen in aliquots.
Example 13
Pharmacokinetic Analysis of Covalently Linked FVIII/VWF Complexes in FVIII Deficient Mice and in Rats
The FVIII/VWF complexes are administered intravenously to FVIII deficient mice (12 mice per substance) with a dose of 100 IU (FVIII:Ag)/kg body weight. Blood samples are drawn at appropriate intervals using an alternating sampling scheme, resulting in samples from 3 animals/timepoint (t=0 min and 16 h for subset No 1, 5 min and 24 h for subset No 2, 2 h and 4 h for subset No 3, and 8 h and 32 h for subset No 4). The scheme is designed to minimize potential effects of blood sampling on the plasma concentration to be quantified. Blood is processed to plasma and stored deep frozen until analysis. FVIII and VWF antigen content is subsequently quantified by specific ELISA assays (see examples 7, 9 and 10). The mean values of the treatment groups are used to calculate in vivo recovery after 5 min. Half-lives are calculated using the time points of the beta phase of elimination according to the formula t1⁄2=ln 2/k, whereas k is the slope of the regression line. Antigen is usually used as a measure in pharmacokinetic studies. It is expected that antigen and functional activity will correlate.
The FVIII/VWF complexes are administered intravenously to narcotized CD/Lewis rats (6 rats per substance) with a dose of 100 IU (VWF:Ag)/kg body weight. Blood samples are drawn at appropriate intervals starting at 5 minutes after application of the test substances using an alternating sampling scheme, resulting in samples from 3 animals/timepoint (t=0, 5, 30, 90 min, 4 h, 1 d for subset Nr. 1 and 0, 15 min, 1, 2, 8 h and 2 d for subset Nr. 2). The scheme is designed to minimize potential effects of blood sampling on the plasma concentration to be quantified. Blood is processed to plasma and stored deep frozen until analysis. FVIII and VWF antigen content is subsequently quantified by specific ELISA assays (see above). The mean values of the treatment groups are used to calculate in vivo recovery after 5 min. Half-lives are calculated using the time points of the beta phase of elimination according to the formula t1/2=ln 2/k, whereas k is the slope of the regression line. Antigen is usually used as a measure in pharmacokinetic studies in normal animals in order to eliminate the background of the intrinsic FVIII activity in the animals from the measurements. It is expected that antigen and functional activity will correlate.
A covalent FVIII/VWF-FP preparation consisting of a single-chain FVIII sequence with the VWF C3 to C6 and CK domains attached to its carboxyterminus via a cleavable linker and an albumin-fused VWF (as described in example 3) were tested for their half-lives in a rat PK model. FIGS. 11A and 11B show the elimination kinetics of the covalent complex (circles, named FVIII-CK+VWF-FP in the figure legend) in comparison to a recombinant FVIII (Advate, squares in FIG. 11A), a VWF-FP (squares in FIG. 11B) and a plasma-derived FVIII-VWF complex (Haemate, triangles). FIG. 11A shows the FVIII data (the covalent complex being measured by the specific Elisa as described in example 6; all other compounds were measured by FVIII Elisa), FIG. 11B shows the data of a VWF Elisa. The elimination kinetics of the covalent construct were similar when FVIII and VWF antigen were measured, as expected when both moieties were covalently attached. The terminal half-life for FVIII antigen was calculated to be 7.9 hours, that of VWF 7.8 hours. Surprisingly the terminal half-life calculated for the VWF-FP control (VWF antigen) was very similar, 8.1 hours. Clearance rates were also similar with 9.8 IU/mL/h for the covalent complex and 10.1 IU/mL/h for VWF-FP. The half-life of rFVIII (Advate) was calculated with 2.5 hours, which would result in an about 3-fold half-life extension of the covalent complex over free FVIII.
These results indicate that the covalent attachment of a FVIII sequence to a half-life extended VWF molecule does extend the half-life of that FVIII molecule significantly and to an extent that it resembles the half-life of the unfused half-life extended VWF molecule.

## Claims

1. A complex comprising von Willebrand factor (VWF) covalently linked to Factor VIII (FVIII), wherein the complex comprises a half-life extending moiety, with the proviso that the complex is not a heterodimeric Fc fusion with one Fc monomer linked to VWF and the other Fc monomer linked to Factor VIII, and wherein the Factor VIII is modified by substitution of a naturally occurring amino acid with a cysteine residue or insertion of a cysteine residue which forms a disulphide bridge with a cysteine residue in VWF.

2. The complex of claim 1, wherein the naturally occurring amino acid in Factor VIII that is substituted is selected from an amino acid in the Factor VIII a3 domain.

3. The complex of claim 1, wherein the naturally occurring amino acid in Factor VIII that is substituted is located within amino acids 1653 to 1660 or within amino acids 1667 to 1674 or within amino acids 1675 to 1688 of the FVIII a3 domain, or the inserted cysteine is introduced into the sequence of amino acids 1653 to 1660 or amino acids 1667 to 1674 or amino acids 1675 to 1688 of the FVIII a3 domain.

4. The complex of claim 1, wherein the naturally occurring amino acid that is substituted in Factor VIII is in the C-terminal domain.

5. The complex of claim 1, wherein the VWF is modified by substitution of a naturally occurring amino acid with a cysteine residue or insertion of a cysteine residue which forms the disulphide bridge with the cysteine residue substituted in the Factor VIII or the cysteine residue inserted into the Factor VIII.

6. The complex of claim 5, wherein the naturally occurring amino acid in VWF is an amino acid in the D′ or D3 domain, or wherein the inserted cysteine residue in the VWF is in the D′ or D3 domain.

7. The complex of claim 5, wherein the inserted cysteine residue in the VWF is introduced in the TIL′ domain, the E′ domain, the D3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain of VWF, or the naturally occurring amino acid in the VWF is in the TIL′ domain, the E′ domain, the D3 domain, the C8-3 domain, the TIL-3 domain or the E-3 domain of VWF.

8. The complex of claim 1, wherein the VWF comprises a FVIII binding domain.

9. The complex of claim 1, wherein the Factor VIII is a genetically engineered Factor VIII.

10. The complex of claim 9, wherein the engineered Factor VIII has a full or partial B-domain deletion, or is a mutated Factor VIII comprising one or more amino acid substitutions, insertions, deletions or combinations thereof, or is a fusion polypeptide with a half-life extending moiety.

11. The complex of claim 1, wherein the VWF is a half-life extended form of VWF.

12. The complex of claim 11, wherein the half-life extended form of VWF is a genetically engineered fusion protein of VWF with a half-life extending moiety.

13. The complex of claim 11, wherein the half-life extending moiety is selected from albumin or a variant or fragment thereof, an immunoglobulin constant region or a portion or variant thereof, an Fc fragment or variant thereof, a solvated random chain with large hydrodynamic volume, afamin or a variant thereof, alpha-fetoprotein or a variant thereof, Vitamin D binding protein or a variant thereof, transferrin or a variant thereof, a carboxyl-terminal peptide (CTP) of human chorionic gonadotropin-βsubunit, and a polypeptide or lipid capable of binding under physiological conditions to albumin or an immunoglobulin constant region.

14. The complex of claim 1, wherein the plasma half-life of VWF is extended by one or more chemical modifications selected from polyethylene glycol (PEGylation), glycosylated PEG, hydroxyl ethyl starch (HESylation), polysialic acids, heparosan polymers, elastin-like polypeptides and hyaluronic acid.

15. The complex of claim 1, wherein the VWF is expressed as a monomer or a dimer.

16. The complex of claim 1, wherein the VWF forms a multimer.

17. The complex of claim 1, wherein the covalent link is obtained by one or more chemically synthesized cross-linkers.

18. A method for treatment of hemophilia A or von Willebrand disease, comprising administering to a subject in need thereof an effective amount of the complex of claim 1.

19. A pharmaceutical composition comprising the complex of claim 1.

20. The complex of claim 1, wherein the Factor VIII is modified by substitution of a naturally occurring amino acid with a cysteine residue.