# Patent

## Title
Anti-bacterial antibodies

## Abstract

A pharmaceutical composition includes a purified antibody and a pharmaceutically acceptable carrier. The antibody can be a monoclonal antibody having both an antigen-binding portion that binds at least one bacterial antigen and a constant region that does not bind staphylococcal protein A.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
The present application is a continuation-in-part of U.S. patent application Ser. No. 12/496,810 which was filed on Jul. 2, 2009 (now U.S. Pat. No. 7,795,402) and is a continuation of U.S. patent application Ser. No. 10/184,222 (now U.S. Pat. No. 7,569,677) which was filed on Jun. 27, 2002 as a continuation of U.S. patent application Ser. No. 09/965,763 (now U.S. Pat. No. 6,475,788) which was filed on Sep. 27, 2001 as a divisional of U.S. patent application Ser. No. 09/378,147 (now U.S. Pat. No. 6,322,788) which was filed on Aug. 20, 1999 and claimed the priority of U.S. provisional patent application No. 60/097,291 filed Aug. 20, 1998.


FIELD OF THE INVENTION
The invention relates to the field of antibodies, immunology, infectious diseases, and medicine.
BACKGROUND
Pathogenic bacteria are a substantial cause of sickness and death in both humans and animals. One of the most prominent gram-positive organisms among these is Staphylococcus aureus (S. aureus). Infection with these cocci often results in the development of a superficial abscess. Other cases of S. aureus infection are more serious. For example, intrusion of S. aureus into the lymphatics and blood, can lead to a systemic infection which, in turn, can cause complications such as endocarditis, arthritis, osteomyelitis, pneumonia, septic shock and not uncommonly death.
A prominent gram-negative bacterial pathogen is Pseudomonas aeruginosa (P. aeruginosa). These rod-shaped bacteria can infect skin and soft tissue, and critical organs such as the lungs, urinary tract, and kidneys. They can also cause septic shock. As with S. aureus, P. aeruginosa infection often occurs in immunocompromised or hospitalized patients. These patients are frequently colonized or infected with both S. aureus and P. aeruginosa—a condition which might exacerbate infections with either. See Hoffman et al., Proc. Nat'l Acad. Sci. USA, 103:19890-19895, 2006.
The standard treatment for bacterial infections has been antibiotic therapy. Unfortunately, over the last several decades, several pathogenic strains of bacteria have developed resistance to various antibiotics. Worse, some of these strains have acquired resistance to multiple antibiotics.
SUMMARY OF THE INVENTION
The invention relates to antibodies that are capable of binding to a bacterial antigen, but lack the ability to be bound by bacterial Fc-binding proteins (e.g., staphylococcal Protein A, streptococcal Protein G, streptococcal protein H, etc.). Preparations of such antibodies should be effective for treating infections caused by bacteria that express Fc-binding proteins.
Effective antibody-mediated clearance of a bacterial infection generally requires the participation of two portions of an antibody molecule. The antigen-binding portion (e.g., the variable region of the Fab portion) of an antibody molecule serves to direct the antibody to a bacterial cell by physically engaging an antigen on that bacterial cell surface. The effector portion (e.g., the constant region or Fc region) of an antibody bound on the bacterial cell surface attracts effector molecules (e.g., complement or Fc receptors) that directly or indirectly kill the bacterium. Thus, an antibody bound to a bacterium typically has its antigen-binding portion directed toward the bacterial surface and its effector portion directed away from the bacterial cell surface. This orientation is thought to allow the effector portion of an antibody to physically interact with effector molecules and thereby facilitate the immune system-mediated clearance of bacteria. In bacteria expressing bacterial Fc-binding proteins, however, bacteria-specific antibodies may be bound to the bacterial cell surface in an opposite orientation (i.e., with the effector portion directed towards the bacterial cell surface and the antigen-binding portion directed away from the bacterial cell surface). In the latter orientation, the effector portion of an antibody is sterically obscured by the bacterial Fc-binding protein and thus not readily able to bind effector molecules. In this manner, bacterial Fc-binding proteins may help the bacteria evade clearance by the immune system.
Accordingly, the present invention features a pharmaceutical composition including a purified antibody and a pharmaceutically acceptable carrier. The antibody can be a monoclonal antibody having both an antigen-binding portion that binds at least one bacterial antigen and a constant region that does not bind staphylococcal protein A. The antibody can be a human IgG3 of the allotype with arginine at amino acid position 435, a human IgG having a constant region that has been modified not to bind staphylococcal protein A, or a human IgM. The bacterial antigen can be from a gram positive bacteria such as a Staphylococcus aureus antigen (e.g., an antigen shared by both serotype 5 capsular polysaccharide and serotype 5 capsular polysaccharide). The bacterial antigen can also be from a gram negative bacteria such as a Pseudomonas aeruginosa antigen (e.g., a lipopolysaccharide antigen).
Also within the invention is a pharmaceutical composition including a purified antibody and a pharmaceutically acceptable carrier, wherein the purified antibody includes 2 different antibodies, one specific for a Staphylococcus aureus antigen and the other specific for a Pseudomonas aeruginosa antigen as described above.
As used herein, an “antibody” is an immunoglobulin, a solution of identical or heterogeneous immunoglobulins, or a mixture of immunoglobulins.
A “monoclonal antibody” is an antibody expressed by one clonal B cell line. As used herein, the term refers to a population of antibody molecules that contains only one species of an antigen binding site capable of immunoreacting with a particular epitope of a particular antigen.
A “polyclonal antibody” is a mixture of heterogeneous antibodies. Typically, a polyclonal antibody will include myriad different antibodies molecules which bind a particular antigen or particular organism with at least some of the different antibodies immunoreacting with a different epitope of the antigen or organism. As used herein, a polyclonal antibody can be a mixture of two or more monoclonal antibodies.
An “antigen-binding portion” of an antibody is contained within the variable region of the Fab portion of an antibody and is the portion of the antibody that confers antigen specificity to the antibody (i.e., typically the three-dimensional pocket formed by the complementarity-determining regions of the heavy and light chains of the antibody). A “Fab portion” or “Fab region” is the proteolytic fragment of a papain-digested immunoglobulin that contains the antigen-binding portion of that immunoglobulin. A “non-Fab portion” is that portion of an antibody not within the Fab portion, e.g., an Fc portion.
A “constant region” of an antibody is that portion of the antibody outside of the variable region. Generally encompassed within the constant region is the “effector portion” of an antibody, which is the portion of an antibody that is responsible for binding other immune system components that facilitate the immune response. Thus, for example, the site on an antibody that binds complement components or Fc receptors (not via its antigen-binding portion) is an effector portion of that antibody. Also included within the constant region is the “Fc region” or “Fc portion”, which is the proteolytic fragment of a papain-digested immunoglobulin that does not contain the antigen-binding portion of that immunoglobulin
A “bacterial Fc-binding protein” is a polypeptide-based molecule derived from a bacterial microorganism (e.g., purified from bacteria, produced by recombinant DNA technology, or synthesized chemically from a known amino acid sequence) that specifically binds the Fc portion (and in some cases the constant region of the Fab portion) of at least one type of immunoglobulin. Common examples of bacterial Fc-binding proteins include Protein A and Protein G. As used herein, the terms “Protein A” and “Protein G” include both native forms of the proteins and mutant forms of the proteins (whether naturally-occurring or man-made) that retain the ability to bind to the constant region of at least one type of immunoglobulin.
By the term “protein” is meant any chain of amino acids and includes peptides, polypeptides, proteins, and modified proteins such as glycoproteins, lipoproteins, phosphoproteins, metalloproteins, and the like.
When referring to a protein molecule such as an antibody, “purified” means separated from components that naturally accompany such molecules. Typically, an antibody or protein is purified when it is at least 30% (e.g., 40%, 50%, 60%, 70%, 80%, 90%, and 100%), by weight, free from the proteins or other naturally-occurring organic molecules with which it is naturally associated. Purity can be measured by any appropriate method, e.g., column chromatography, polyacrylamide gel electrophoresis, or HPLC analysis. A chemically-synthesized protein or other recombinant protein produced in a cell type other than the cell type in which it naturally occurs is “purified.” An antibody containing a desired immunoglobulin type and an undesired immunoglobulin type is “enriched” for the desired immunoglobulin type when treatment of the antibody results in a higher ratio of desired immunoglobulin to undesired immunoglobulin after treatment than before treatment. For example, a solution of antibody containing Protein A-binding immunoglobulins and non-Protein A-binding immunoglobulins is enriched for the latter when some of all of the Protein A-binding antibodies are removed from the solution.
By “bind”, “binds”, or “reacts with” is meant that one molecule recognizes and adheres to a particular second molecule in a sample, but does not substantially recognize or adhere to other molecules in the sample (e.g., Protein A “binds” to the constant region of Human IgG1 but not to Chicken IgG). Generally, an antibody that “specifically binds” another molecule has a binding affinity greater than about 105 to 106 liters/mole for that other molecule.
A “therapeutically effective amount” is an amount which is capable of producing a medically desirable effect in a treated animal or human (e.g., amelioration or prevention of a disease).
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods, and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In the case of conflict, the present specification, including definitions will control. In addition, the materials, methods, and examples are illustrative only and not intended to be limiting.
Other features and advantages of the invention will be apparent from the following detailed description, and from the claims.


DETAILED DESCRIPTION
The present invention relates to anti-bacterial antibodies that do not react with bacterial Fc-binding proteins. These antibodies bind bacteria expressing Fc-binding proteins via the antigen-binding portion of their Fab regions, leaving the effector portion-containing constant regions of these antibodies oriented away from the bacterial cell surface and free to engage other molecules. Thus, the effector functions of these antibodies should be fully functional (i.e., able to effect complement fixation, opsonization, etc.). In comparison to the above antibodies, antibacterial antibodies that react with bacterial Fc-binding proteins may bind bacteria expressing Fc-binding proteins via their constant regions. In this case, the effector portions of these antibodies would be sterically-obscured by the bacterial Fc-binding proteins and hence partially or wholly unavailable for binding effector molecules such as complement components or Fc receptors on phagocytes.
Although the above immunoglobulins lack a constant region capable of binding bacterial Fc-binding proteins, this does not limit the featured antibodies to those lacking a constant region. On the contrary, in order to be effective against bacteria, the immunoglobulins of the invention should generally have an effector region capable of mediating an immune response (e.g., complement fixation or opsonization). Thus, typically, the immunoglobulins of the invention have an intact constant region. For example, human immunoglobulins such as IgG3 (allotype with arginine at amino acid position 435), IgA, IgD, IgE and IgM possess an intact constant region that has little or no reactivity for Protein A or Protein G. Immunoglobulins with a truncated or mutated constant region (e.g., the portion of constant region that binds a bacterial Fc-binding protein is ablated) are also within the invention if they are capable of mediating an immune response. The immunglobulins of the invention might utilize kappa or lambda light chains and heavy chains that include VH families such as 1, 2, 3, 4, 5, 6. Immunoglobulins that utilize a VH other than VH3 are preferred in applications where VH3-protein A interaction is undesirable. Also within the invention are immunoglobulins that have an antigen-binding portion specific for a bacterial antigen, but lack both a constant region that reacts with a bacterial Fc-binding protein and an effector region capable of mediating an immune response. These immunoglobulins are conjugated with an antibiotic (e.g., antibiotic-conjugated anti-staphylococcal Fab fragments). The antigen-binding portion of these immunoglobulins permits them to bind to and deliver the antibiotic to a bacterium. Hence, rather than relying on immune system effectors (e.g., complement or Fc receptors), these immunoglobulins are directly bactericidal or bacteriostatic.
Animals usually respond to a bacterial infection by producing antibodies against the bacteria. These antibodies help clear the infection by two general methods. In complement-mediated lysis, components of the complement system (e.g., C1q) bind to the constant region of antibodies attached to the cell wall of the bacteria. This interaction triggers various enzymatic events (e.g., the classical pathway and the alternative pathway) which cause the formation of a membrane attack complex that bores holes through bacterial membranes. These holes disrupt the integrity of the bacterial membrane and thus can result in bacterial death. Inopsonization, the constant regions of antibodies coating a bacterium directly or indirectly interact with receptors (e.g., Fc receptors or complement receptors) on a phagocyte (e.g., a macrophage, monocyte, or neutrophil). By increasing the affinity of a phagocyte for a bacterium and/or activating the phagocyte, this interaction facilitates the bacterium being phagocytosed and destroyed by the phagocyte. Unfortunately, complement-mediated lysis and opsonization may not function efficiently when the pathogenic bacteria express Fc-binding proteins. This is likely so because the bacterial Fc-binding protein competes with effector molecules (e.g., complement and Fc receptors) for binding to the constant region of the antibacterial antibodies.
Common bacterial Fc-binding proteins include: staphylococcal Protein A and streptococcal Protein G. Protein A is a polypeptide isolated from some strains of S. aureus. Protein G is a polypeptide isolated from some strains of group C streptococci. Both Protein A and Protein G bind the constant region of many immunoglobulin molecules without interacting with the antigen binding site. Surolia et al., Trends Biochem. Sci., 7:74 (1981); Bjorck et al., J. Immunol., 133:969 (1984).
Bacteria which the antibodies of the invention can specifically bind might include Acinetobacter baumanii (Family Moraxellaceae); Actinobacillus spp. (Family Pasteurellaceae), Actinomycetes (actinomycetes, streptomycetes); Actinomyces such as Actinomyces israelii, Actinomyces naeslundii, and Actinomyces spp.; Aeromonas spp. (Family Aeromonadaceae) such as Aeromonas hydrophila, Aeromonas veronii biovar sobria (Aeromonas sobria), and Aeromonas caviae; Peptostreptococcus spp.; Streptococcus spp.; Veillonella spp.; Mobiluncus spp.; Propionibacterium acnes; Lactobacillus spp.; Eubacterium spp.; Bifidobacterium spp.; Bacteroides spp.; Prevotella spp.; Porphyromonas spp.; Fusobacterium spp.; Bacillus spp. (Family Bacillaceae) such as Bacillus anthracis, Bacillus cereus, Bacillus subtilis, Bacillus thuringiensis, and Bacillus stearothermophilus; Bacteroides spp. (Family Bacteroidaceae) such as Bacteroides fragilis; Bordetella spp. Including Bordetella pertussis, Bordetella parapertussis, and Bordetella bronchiseptica; Borrelia spp. (Order Spirochaetales; Family Spirochaetaceae) such as Borrelia recurrentis and Borrelia burgdorferi; Brucella spp. including Brucella abortus, Brucella canis, Brucella melintensis, and Brucella suis; Burkholderia spp. such as Burkholderia pseudomallei and Burkholderia cepacia; Campylobacter spp. Including Campylobacter jejuni, Campylobacter coli, Campylobacter lari, and Campylobacter fetus; Citrobacter spp. (Family Enterobacteriaceae); Clostridium spp. Such as Clostridium perfringens, Clostridium difficile, and Clostridium botulinum; Chlamydia spp. such as Chlamydia tachomatis and Chlamydia pneumonia; Corynebacterium spp. including Corynebacterium diphtheria, Corynebacterium jeikeum, and Corynebacterium urealyticum; Edwardsiella tarda; Enterobacter spp. including Citrobacter freundii, Citrobacter diversus, Enterobacter aerogenes, Enterobacter agglomerans, and Enterobacter cloacae; Escherichia coli; Klebsiella spp. such as Klebsiella pneumoniae and Klebsiella oxytoca; Morganella morganii; Mycoplasma pneumonia; Proteus spp. including Proteus mirabilis and Proteus vulgaris; Providencia spp. such as Providencia alcalifaciens, Providencia rettgeri, and Providencia stuartii; Rickettsia spp. such as Rickettsia rickettsii; Salmonella spp. including Salmonella enterica, Salmonella typhi, Salmonella paratyphi, Salmonella enteritidis, Salmonella cholerasuis, and Salmonella typhimurium; Serratia spp. such as Serratia marcesans and Serratia liquifaciens; Shigella spp. including Shigella dysenteriae, Shigella flexneri, Shigella boydii, and Shigella sonnei; Yersinia spp. such as Yersinia enterocolitica, Yersinia pestis, and Yersinia pseudotuberculosis; Enterococcus spp. such as Enterococcus faecalis and Enterococcus faecium; Erysipelothrix rhusopathiae; Francisella tularensis; Haemophilus spp. (Family Pasteurellaceae) such as Haemophilus influenza, Haemophilus ducreyi, Haemophilus aegyptius, Haemophilus parainfluenzae, Haemophilus haemolyticus, and Haemophilus parahaemolyticus; Helicobacter spp. including Helicobacter pylori, Helicobacter cinaedi, and Helicobacter fennelliae; Legionella pneumophila; Leptospira interrogans; Listeria monocytogenes; Micrococcus spp. (Family Micrococcaceae); Moraxella catarrhalis; Mycobacterium spp. such as Mycobacterium leprae and Mycobacterium tuberculosis; Nocardia spp. including Nocardia asteroides and Nocardia brasiliensis; Neisseria spp. (Family Neisseriaceae) such as Neisseria gonorrhoeae and Neisseria meningitides; Pasteurella multocida; Plesiomonas shigelloides; Propionibacterium acnes; Pseudomonas aeruginosa; Rhodococcus spp.; Staphylococcus spp. including Staphylococcus aureus, Staphylococcus epidermidis, and Staphylococcus saprophyticus; Stenotrophomonas maltophilia; Streptococcus pneumonia; Streptococcus spp. such as Streptococcus pyogenes, Streptococcus agalactiae, Streptococcus anginosus, Streptococcus equismilis, Streptococcus bovis, and Streptococcus mutans; Streptomyces spp.; Treponema spp. including Treponema pallidum ssp. pallidum, Treponema pallidum ssp. Endemicum, Treponema pallidum ssp. Pertenue, and Treponema carateum; and Vibrio spp. (Family Vibrionaceae) such as Vibrio cholera, Vibrio parahaemolyticus, Vibrio vulnificus, Vibrio alginolyticus, Vibrio mimicus, Vibrio hollisae, Vibrio fluvialis, Vibrio metchnikovii, Vibrio damsel, and Vibrio furnisii. 
Examples of bacterial antigens which the antibodies of the invention can specifically bind include capsule antigens (e.g., protein or polysaccharide antigens such as CP5 or CP8 from the S. aureus capsule); cell wall (including outer membrane) antigens such as peptidoglycan (e.g., mucopeptides, glycopeptides, mureins, muramic acid residues, and glucose amine residues) polysaccharides, teichoic acids (e.g., ribitol teichoic acids and glycerol teichoic acids), phospholipids, hopanoids, and lipopolysaccharides (e.g., the lipid A or O-polysaccharide moieties of bacteria such as Pseudomonas aeruginosa serotype O11); plasma membrane components including phospholipids, hopanoids, and proteins; proteins and peptidoglycan found within the periplasm; fimbrae antigens, pili antigens, flagellar antigens, and S-layer antigens. S. aureus antigens can be a serotype 5 capsular antigen, a serotype 8 capsular antigen, and antigen shared by serotypes 5 and 8 capsular antigens, a serotype 336 capsular antigen, protein A, coagulase, clumping factor A, clumping factor B, a fibronectin binding protein, a fibrinogen binding protein, a collagen binding protein, an elastin binding protein, a MHC analogous protein, a polysaccharide intracellular adhesion, alpha hemolysin, beta hemolysin, delta hemolysin, gamma hemolysin, Panton-Valentine leukocidin, exfoliative toxin A, exfoliative toxin B, V8 protease, hyaluronate lyase, lipase, staphylokinase, LukDE leukocidin, an enterotoxin, toxic shock syndrome toxin-1, poly-N-succinyl beta-1→6 glucosamine, catalase, beta-lactamase, teichoic acid, peptidoglycan, a penicillin binding protein, chemotaxis inhibiting protein, complement inhibitor, Sbi, and von Willebrand factor binding protein.
Materials And Methods
Antibodies
Antibacterial antibodies can be produced by any one of several methods known in the art. E.g., Yoshida et al., Experientia 43:329, 1987; Yoshida and Ichiman, J. Clin. Microbiol. 20:461, 1984; and U.S. Pat. No. 5,770,208. Classically, antigen-specific antibodies are produced by immunizing a host animal with the antigen, and later collecting the antibody-containing serum from the animal. For raising bacteria-specific antibodies, the antigen typically used is live, attenuated, fixed or killed whole bacteria (“whole bacterial antigen”). For raising antibodies specific for one or more particular bacterial antigens, one or more protein antigens, peptide fragments thereof, or polysaccharide antigens derived from the bacteria (“purified antigens”) are used to immunize host animals. Purified antigens can be a homogenous preparation of one antigen derived from one or more bacterial strains or a combination of several different antigens isolated from one or more bacterial strains. To enhance the immune response, antigens (especially small peptide antigens) may be made more immunogenic by coupling to a carrier protein, such as keyhole limpet hemocyanin (KLH). See, e.g., Ausebel et al., Current Protocols in Molecular Biology, John Wiley & Sons, Inc., N.Y., 1989.
Antibacterial antibodies may also be purchased commercially. For example, anti-S. aureus antibodies may be purchased from Chemicon (Temecula, Calif.) and anti-streptococcal antibodies may be purchased from Cortex Biochem (San Leandro, Calif.). Alternatively, pooled immunoglobulin may be used. Pooled immunoglobulin may be obtained by combining immunoglobulins isolated from several hosts. Pooled immunoglobulin can also be obtained from commercial suppliers. E.g., Gamimmune®, Bayer Biological, West Haven, Conn.; Sandoglobulin®, Novartis Pharmaceuticals Corporation, East Hanover, N.J. Lots of pooled immunoglobulin can be checked for reactivity against a particular bacterial species using techniques well known in the art. See, e.g., Garvey et al., Methods in Immunology, W.A. Benjamin, Inc., Reading, Mass., 1977. Those lots having reactivity for the bacterial antigen of interest can be used in the invention. For example, lots of pooled normal human immunoglobulin are examined for antibodies that specifically bind S. aureus antigens using immunoprecipitation assays. In the latter example, if necessary, Fc-binding to Protein A can be excluded from consideration by using F(ab')2 fragments of the immunoglobulin or by first adsorbing out Protein A-binding activity from the immunoglobulin.
Any animal capable of producing antibodies in response to an antigen may be used in the invention. Commonly used animals include: mice, rats, horses, cows, goats, sheep, rabbits, cats, dogs, guinea pigs, chickens, and humans. Host animals are immunized by injection with purified or whole bacterial antigen. Preferably, after the first immunization, the host animal receives one or more booster injections of antigen to augment antibody production and affinity. For immunization of humans, care should be taken to select the appropriate antigen, adjuvant, and/or carrier protein to avoid potential adverse reactions (e.g., granuloma formation with Freund's complete adjuvant; anaphylactic shock).
To enhance the immunologic response, antigens, whether purified or whole bacterial, are typically mixed with adjuvant before injection into a host animal or human. Adjuvants useful in augmenting antibody production include Freund's adjuvant (complete and incomplete), mineral gels such as aluminum hydroxide, surface active substances such as lysolecithin, pluronic polyols, polyanions, peptides, oil emulsions, KLH, and dinitrophenol (DNP). Examples of potentially useful human adjuvants include BCG (bacille Calmette-Guerin) and Corynebacterium parvum. Antigens can also be cross-linked or incorporated into lipid vesicles to enhance their antigenicity.
Antibodies within the invention include without limitation polyclonal antibodies, monoclonal antibodies, humanized, and chimeric antibodies. Polyclonal antibodies can be isolated by collecting sera from immunized host animals. Monoclonal antibodies can be prepared using the whole bacterial, protein, peptide, or polysaccharide antigens discussed above and standard hybridoma technology. See, e.g., Kohler et al., Nature, 256:495, 1975; Kohler et al., Eur. J. Immunol. 6:511, 1976; Kohler et al., Eur. J. Immunol. 6:292, 1976; Hammerling et al., “Monoclonal Antibodies and T cell Hybridomas,” Elsevier, N.Y., 1981; Coligan et al., Current Protocols in Immunology, John Wiley & Sons, N.Y., 1997. Human monoclonal antibodies are prepared by immortalizing a human antibody secreting cell (e.g., a human plasma cell). See, e.g., U.S. Pat. No. 4,634,664. To obtain monoclonal antibodies, hybridomas or other immortalized antibody secreting cells are cultivated in vitro (e.g., in tissue culture) or in vivo (e.g., in athymic or SCID mice). Antibodies are isolated by collecting the in vitro culture medium or bodily fluids (e.g., serum or ascites) from the in vivo cultures.
Additionally, chimeric antibodies, which are antigen-binding molecules having different portions derived from different animal species (e.g., variable region of a rat immunoglobulin fused to the constant region of a human immunoglobulin), are expected to be useful in the invention. Such chimeric antibodies can be prepared by methods known in the art. E.g., Morrison et al., Proc. Nat'l. Acad. Sci. USA, 81:6851, 1984; Neuberger et al., Nature, 312:604, 1984; Takeda et al., Nature, 314:452, 1984. Similarly, antibodies can be humanized by methods known in the art. For example, monoclonal antibodies with a desired binding specificity can be commercially humanized (Scotgene, Scotland; Oxford Molecular, Palo Alto, Calif.) or as described in U.S. Pat. Nos. 5,693,762; 5,530,101; or 5,585,089. In a like manner, portions of the constant region of Protein A- or Protein G-binding immunoglobulins can be altered, deleted or mutated to remove Protein A or Protein G reactivity.
Once isolated, antibodies can be further purified by conventional techniques including: salt cuts (e.g., saturated ammonium sulfate precipitation), cold alcohol fractionation (e.g., the Cohn-Oncley cold alcohol fractionation process), size exclusion chromatography, ion exchange chromatography, immunoaffinity chromatography (e.g., chromatography beads coupled to anti-human immunoglobulin antibodies can be used to isolate human immunoglobulins) and antigen affinity chromatography. See, e.g., Coligan et al., supra. Although conventional antibody purification techniques using Protein A and Protein G (e.g., Protein A or Protein G chromatography) could sometimes be utilized to isolate the antibodies of the invention, in many cases this would not be feasible because an object of the invention is to remove antibody binding to such bacterial Fc-binding proteins. For example, to isolate anti-S. aureus antibodies that bind Protein G but not Protein A, Protein G chromatography could be used. Rather than using Protein A or Protein G to positively select the antibodies of the invention, Protein A or Protein G can be used to remove Protein A or Protein G reactive antibodies from the antibodies of the invention.
Standard techniques in immunology and protein chemistry can be used to analyze and manipulate the antibodies of the invention. For example, dialysis can be used to alter the medium in which the antibodies are dissolved. The antibodies may also be lyophilized for preservation. Antibodies can be tested for the ability to bind specific antigens using any one of several standard methods such as Western Blot, immunoprecipitation analysis, enzyme-linked immunosorbent assay (ELISA), and radioimmunoassay (RIA). See, e.g., Coligan et al., supra.
Bacteria And Bacterial Antigens
Antigens useful for the production and testing of the antibodies of the invention can be obtained from commercial sources, or isolated from animals or humans harboring the bacteria of interest by conventional techniques in microbiology. For example, dried S. aureus (Sigma, St. Louis, Mo., 1997 Catalog, Cat. #S0504); formalin-fixed, non-Protein A-producing S. aureus (Sigma, Cat. #S2014); formalin-fixed, Protein A-producing (Cowan strain) S. aureus (Sigma, Cat. #P7155); and formalin-fixed Group C streptococci (Sigma, Cat. #P2169) are commercially available. Additionally, a large number of different S. aureus isolates (e.g., ATCC Numbers 6341, 9996, and 33497) and Group C streptococcus isolates (e.g., ATCC numbers 12388 and 9342) may be purchased from American Type Culture Collection (Rockville, Md.). Alternatively, infectious bacteria such as S. aureus or Group C Streptococci may be obtained from an infected host by isolation and culture (e.g., a site of infection is swabbed, the swab is used to inoculate sterile culture medium suitable for growing the bacterial strain of interest, the culture is incubated under conditions that promote bacterial growth, and bacteria are then isolated from the culture).
Purified antigens derived from bacteria such as S. aureus (e.g., enterotoxin A and B, Sigma Cat. #S9399 and S4881) or streptococci (e.g., streptolysin O and S, Sigma Cat. #S5265 and S2888) can be obtained commercially or isolated from whole bacteria by techniques known in the art. For example, proteins contained in a sample of S. aureus or Group C streptococci can be separated according to size by SDS-polyacrylamide gel electrophoresis (see, Ausubel et al, supra; Laemmli, U.K., Nature 227:680-685, 1970) or by size and isoelectric point using two dimensional gel electrophoresis (O'Farrell, P. H., J. Biol. Chem. 250: 4007-4021, 1975). After staining to reveal the location of proteins, specific antigens can be excised from the gel and used to immunize host animals. In another example, purified S. aureus capsular polysaccharide antigens can be prepared as described in U.S. Pat. No. 5,770,208 and Fattom et al., Infect. Immun. 61:1023-1032 (1993).
Protein A
Protein A is widely available from commercial suppliers. It is available in many forms including the native protein isolated from S. aureus (e.g., Sigma Cat. #P3963), recombinantly-produced (e.g., Sigma Cat. #P7837), and recombinantly-produced with modifications (e.g., IgG binding domain only, Sigma Cat. #P2164). Any form which retains affinity for the constant region of immunoglobulins can be used. Alternatively, it may be isolated from the Cowan strain of S. aureus or from the culture medium of a Protein A-secreting bacterial strain by known methods. E.g., Cohen, S., and Sweeney, H. M., J. Bact. 140:1028, 1979.
Protein G
Protein G is also widely available from commercial sources. For example, the native protein isolated from a strain of Group C streptococcus (e.g., Sigma Cat. #P9659), recombinantly-produced (e.g., Sigma Cat. #P5170), and recombinantly-produced with modifications (e.g., Protein G′, Sigma Cat. #P4689) are all available commercially. Any form of Protein G which retains affinity for the constant region of immunoglobulins can be used. Alternatively, it may be isolated from Group C streptococci by known methods. E.g., Reis et al., J. Immunol., 132:3098, 1984.
Removal of Bacterial Fc-Binding Protein Reactivity From Antibodies
Bacterial Fc-binding protein reactivity (e.g., Protein A or Protein G binding) is adsorbed from a solution of antibody by first incubating the bacterial Fc-binding protein with the antibody solution under conditions in which the bacterial Fc-binding protein usually binds antibodies (e.g., room temperature, in phosphate-buffered saline at about pH 7.0-8.0), and then separating the antibodies which are unbound to the bacterial Fc-binding protein from the antibodies which are bound to the bacterial Fc-binding protein. For example, an insoluble form of Protein A (e.g., Protein A-acrylic beads, Sigma Cat. #P1052; Protein A-agarose, Sigma Cat. #P0932; and Protein A-sepharose, Sigma Cat. #P9424) is added to the antibody solution. The solution is then mixed (e.g., tumbled) under conditions which allow antibody binding to Protein A. The insoluble Protein A (along with the Protein A-binding antibodies) is then separated from the supernatant by filtration. The resulting supernatant contains antibodies enriched for non-Protein A binding immunoglobulins. Protein A affinity column chromatography can also be used to isolate non-Protein A binding antibodies from a solution containing both Protein A and non-Protein A binding antibodies. See, e.g., Coligan et al., supra. Here, the antibodies not bound to the Protein A matrix are collected (i.e., those antibodies which elute from a column containing a Protein A matrix using a low salt buffer of about neutral pH). In a like manner, an insoluble form of Protein G can be used to enrich a solution of antibodies for immunoglobulins that do not bind protein G. See, id.
Removal of bacterial Fc-binding protein reactivity from a solution of antibodies is not necessary for the invention when the solution of antibodies does not originally contain immunoglobulins that bind bacterial Fc-binding proteins. For example, a cocktail of different human monoclonal antibodies which specifically bind to S. aureus but do not have constant regions that specifically bind Protein A can be used (e.g., human monoclonal antibodies of subclass IgG3 having the allotype with arginine at amino acid position 435). Likewise, other monoclonal antibodies that do not bind Protein A can be used (e.g., chicken or goat IgGs).
Conjugation of Antibodies To Antibiotics
The invention includes unmodified antibodies as well as antibodies conjugated with one or more antibiotics. By “antibiotics” is meant any molecule which exhibits a bactericidal or bacteriostatic effect. Included within the term are, for example: classic antibiotics, e.g., chloramphenicol, erythromycin, lincomycin, fusidic acid, streptomycin, other aminoglycoside antibiotics, tetracyclines, polymyxins, fosfomycin, vancomycin, ristocetin, bacitracin, gramacidin, penicillins, and cephalosporins; antimetabolites, e.g., sulfonamides and trimethoprim; and other bactericidal or bacteriostatic agents such as small molecule toxins, radioactive compounds, and nucleoside analogues. Antibiotics can be conjugated to antibodies by methods known in the art (e.g., U.S. Pat. No. 5,545,721, and Means and Feeney, Chemical Modification of Proteins, Holden-Day Inc., San Francisco, Calif. 1971). For example, antibiotics can be covalently bonded to an antibody. In another example, antibiotics are non-covalently associated with an antibody (e.g., antibiotic-loaded liposomes are decorated with anti-bacterial antibodies). The method of conjugation should be chosen so that the antibiotic retains its bactericidal or bacteriostatic property when localized to the infection. For example, when it is desired to deliver a high concentration of unconjugated antibiotic to the site of an infection, the antibody-antibiotic bond should be such that it breaks after a short time in the microenvironment of the infection site. Antibodies conjugated with such antibiotics can be administered to an animal or human suffering from a bacterial infection such as a S. aureus or streptococcal infection. It is expected that these conjugated antibodies will localize at the site(s) of infection and thereby deliver the antibiotics directly to the bacteria. Moreover, as the antibiotic is targeted to the site of infection via the antibodies, it is likely that higher doses of antibiotics could be used without the degree of side effects that would accompany the use of unconjugated antibiotics. Hence, these antibiotic-conjugated antibodies should be especially useful for delivering a concentrated amount of antibiotic to the site of infection.
Uses
Administration of Pharmaceutical Compositions to Animals or Humans
The pharmaceutical compositions of the invention may be administered to animals or humans in pharmaceutically acceptable carriers (e.g., physiological saline), that are selected on the basis of mode and route of administration and standard pharmaceutical practice. A list of pharmaceutically acceptable carriers, as well as pharmaceutical formulations, can be found in Remington's Pharmaceutical Sciences, a standard text in this field, and in USP/NF. Other substances may be added to the compositions to stabilize and/or preserve the compositions. For example, glycine (e.g., 0.3 M, pH 6.8), maltose (e.g., 10%) and/or thimerosal (e.g., 1:10,000) may be added to the compositions.
The compositions of the invention may be administered to animals or humans by any conventional technique. Typically, such administration will be parenteral (e.g., intravenous, subcutaneous, intramuscular, or intraperitoneal introduction). The compositions may also be administered directly to the target site (e.g., an abscess) by, for example, surgical delivery to an internal or external target site, or by catheter to a site accessible by a blood vessel. Other methods of delivery, e.g., liposomal delivery or diffusion from a device impregnated with the composition, are known in the art. The composition may be administered in a single bolus, multiple injections, or by continuous infusion (e.g., intravenously or by peritoneal dialysis).
Effective Doses
A therapeutically effective amount is an amount which is capable of producing a medically desirable result in a treated animal or human. As is well known in the medical arts, dosage for any one animal or human depends on many factors, including the subject's size, body surface area, age, the particular composition to be administered, sex, time and route of administration, general health, and other drugs being administered concurrently. It is expected that an appropriate dosage for intravenous administration of antibodies would be in the range of about 0.1 to 100 mg/kg body weight. More specific dosages can be determined by the method described below.
Toxicity and therapeutic efficacy of the compositions of the invention can be determined by standard pharmaceutical procedures, using cells in culture and/or experimental animals to determine the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD50/ED50. Antibodies that exhibit large therapeutic indices are preferred. While antibodies that exhibit toxic side effects may be used, care should be taken to design a delivery system that targets such compounds to the site of the infection or tissues to be treated in order to minimize potential damage to uninvolved tissue and thereby reduce side effects.
The data obtained from cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. The dosage of such compounds lies preferably within the range of circulating concentrations that include an ED50 with little or no toxicity. The dosage may vary within this range depending on the dosage form employed and the route of administration utilized.
EXAMPLE
Purification of Non-Protein A Binding Immunoglobulins S. aureus capsular polysaccharide vaccines are prepared as described in Fattom et al., Infect. Immun. 61:1023-1032 (1993). Human subjects (including those who possess immunoglobulins that have constant regions that do not react with Protein A) are then immunized using the vaccines as described in Fattom et al., id. The subjects are then bled weekly after each immunization and whole cell serum is collected and pooled. The sera are then subjected to Cohn-Oncley cold alcohol fractionation to isolate the immunoglobulins contained within the pooled serum. The isolated immunoglobulins are dissolved in 0.02 M NaH2PO4 (pH 8.0), 0.15 M NaCl at a concentration of 10 mg/ml. 1.0 ml of Protein A-agarose (Sigma, Cat. #P0932) is added per 1.0 ml of the dissolved immunoglobulins and the mixture is incubated for 2.0 hours at 4 degrees Celsius with gentle tumbling. The mixture is then centrifuged at 20×g for 10 minutes to isolate the supernatant from the Protein A-agarose (and Protein A-bound immunoglobulins). The supernatant which contains the non-Protein A binding immunoglobulins is then removed and filtered using a 0.22 micron filter.

## Claims

1. A pharmaceutical composition comprising a purified antibody and a pharmaceutically acceptable carrier, wherein said antibody is a monoclonal antibody having both an antigen-binding portion that binds at least one bacterial antigen and a constant region that does not bind staphylococcal protein A.

2. The composition of claim 1, wherein said antibody is a human IgG3 of the allotype with arginine at amino acid position 435.

3. The composition of claim 1, wherein said antibody is a human IgG having a constant region that has been modified not to bind staphylococcal protein A.

4. The composition of claim 1, wherein said antibody is a human IgM.

5. The composition of claim 1, wherein the bacterial antigen is from a gram positive bacteria.

6. The composition of claim 5, wherein the bacterial antigen is a Staphylococcus aureus antigen.

7. The composition of claim 6, wherein the antigen-binding portion specifically binds an antigen shared by both serotype 5 capsular polysaccharide and serotype 8 capsular polysaccharide.

8. The composition of claim 7, wherein the said antibody is a human IgG3 of the allotype with arginine at amino acid position 435.

9. The composition of claim 7, wherein said antibody is a human IgG having a constant region that has been modified not to bind staphylococcal protein A.

10. The composition of claim 7, wherein said antibody is a human IgM.

11. The composition of claim 1, wherein the bacterial antigen is from a gram negative bacteria.

12. The composition of claim 11, wherein the bacterial antigen is a Pseudomonas aeruginosa antigen.

13. The composition of claim 12, wherein the antigen-binding portion specifically binds a lipopolysaccharide antigen.

14. The composition of claim 13, wherein said antibody is a human IgG3 of the allotype with arginine at amino acid position 435.

15. The composition of claim 13, wherein said antibody is a human IgG having a constant region that has been modified not to bind staphylococcal protein A.

16. The composition of claim 13, wherein said antibody is a human IgM.