# Patent

## Title
Method for diagnosing or predicting susceptibility to psychiatric disorders

## Abstract

The present invention provides a method for diagnosing or predicting susceptibility to a psychiatric disorder in an individual, which comprises confirming molecular diversity and/or subcellular distribution of DISC 1 in the cell from the individual. In addition, a novel risk haplotype of DISC1 for psychiatric disorder is also provided.

## Background
CROSS-REFERENCE TO RELATED APPLICATION
This application claims the benefit of a previously filed Provisional Application No. 60/539,900 filed Jan. 28, 2004, the whole contents of which is hereby incorporated by reference.


BACKGROUND OF THE INVENTION
1. Technical Field
The present invention relates to a method for diagnosing or predicting susceptibility to a psychiatric disorder, especially schizophrenia, bipolar disorder and the like.
2. Art Related
Currently differential diagnosis for psychiatric disorders is largely phenomenological. Diagnosis is based on observation of certain subset of symptoms and the course of disorders. The Diagnostic and Statistical Manual (DSM) of Mental Disorders (the American Psychiatric Association's Diagnostic and Statistical Manual of Mental Disorders, 4th edition, 1994) is widely used. Although considerable research efforts have been conducted for developing biological and biochemical assessment to psychiatric disorders, almost none of objective markers has been utilized in their diagnostic criteria.
Schizophrenia is one of the most devastating psychiatric disorders, as defined by DSM-IV, characterized by psychotic symptoms involving disturbances of thought, emotion, and perception.
Schizophrenia occurs worldwide as a common disease such as hypertension and diabetic etc. Although its etiology remains elusive, multiple lines of evidence favor genetic predisposition to schizophrenia. Linkage analyses for schizophrenia have indicated multiple chromosomal loci, suggesting the existence of certain candidate genes as its susceptibility factors. Brain imaging and neuropathological assessments suggest that abnormalities in schizophrenic include aberrant cerebral cortical development that might reflect cytoskeletal disturbances.
In a Scottish family, a balanced chromosome (1;11)(q42.1; q14.3) translocation associates with occurrence of major psychiatric disorders (schizophrenia and mood disorders) with a logarithm of odds score of 7.1. This translocation interrupts the coding sequences of a transcript, named as Disrupted-in Schizophrenia-1 (DISC1), leading to loss of the C-terminal 257 amino acids for DISC1 protein.
It was reported that transient expression of mutant DISC1 protein (mutDISC1), but not wild-type DISC1 protein (wtDISC1) in PC12 cells inhibits neurite outgrowth (PNAS vol. 100, No. 1, 289-294, 2003). It has also been reported that stable transfection of wtDISC1 in PC12 cells enhances neurite extension (Molecular Psychiatry vol. 8, No. 7, 685-694, 2003).
wtDISC1 is expressed mainly in the centrosome, in contrast, mutDISC1 widely distributed in the cytoplasm (PNAS vol. 100, No. 1, 289-294, 2003, Human Molecular Genetics vol. 12, No. 13, 1591-1608, 2003).
Although these prior arts have provided information on subcellular localization of DISC1 and clues for its functions, they have not addressed pathophysiology when wtDISC1 is impaired. Thus, involvement of DISC1 in more general schizophrenia and related mental illnesses, without the unique mutation of DISC1 (mutDISC1) found in the Scottish family, is still unclear.
SUMMARY OF THE INVENTION
In the present specification and claims, “psychiatric disorders” may include, but not limited to, schizophrenia, mood disorder such as bipolar disorder, substance abuse.
The present invention provides a method for diagnosing or predicting susceptibility to a psychiatric disorder in an individual, which comprises confirming subcellular distribution and/or molecular diversity of DISC 1 in the cells from the individual.
According to the present invention, subcellular distribution of DISC1 may be determined by any of known method including subcellular fraction of the cells and evaluating quantitatively or semi-quantitatively the fractions, or visualizing the protein in the cell. It will be convenient to evaluate subcellular distribution of DISC1 or its isoform by its nuclear to cytplasmic ratio or crude nuclear pellet (P) to postnuclear supernatant (S) ratio.
According to the present specification and claims, the term “molecular diversity” may include expression level of DISC1 at both mRNA and protein levels, the amount of impairment of DISC1 at the expression levels and/or functions. Molecular diversity may be linked to a variety of haplotypes. Therefore, “a confirmation of molecular diversity of DISC1” implies confirmation of alteration in DISC1 at the expression levels and/or functions. The examples of possible mechanisms for the alteraion include deficits in transactivation of DISC1 gene, abnormalities in splicing (exon usage), changes in RNA stability, and point mutations of DISC1 protein.
According to the present invention, subcellular distribution and/or molecular diversity of DISC1 may be determined by using antibody to DISC1. Antibodies may be monoclonal or polyclonal. An example of antibodies to various epitopes on DISC1 are shown in FIG. 13. A kit with the antibodies for conducting the method of the present invention can be provided. One embodiment is that the antibodies in the kit are conjugated to reagents including a secondary antibody and a detectable marker.
The specimens from the individual and control subjects to be tested based on the invention may be bloods, fibroblasts, mucous membranes, olfactory epitheliums and lymphoblasts.
To date, human fibroblast, olfactory epithelium cells and lymphoblasts are becoming an increasingly popular cellular system for study of gene expression or other cellular functions. The advantage is the ready accessibility of the tissue compared to neural tissue. (Arnold S E et al. 2001; Feron F et al 1999; Moberg P J, et al. 1999; Taylor, M. S. et al. 2003; Farbman A I. 1994; Crews L et al 1994; Panov A V et al 2002)
In one embodiment, diagnosing or predicting susceptibility to bipolar disorder can be conducted by measuring expression level of DISC1 in lymphoblasts of the individual.
According to another aspect of the present invention, a novel risk haplotype DISC-1 for psychiatric disorder is provided. The risk haplotype consists of the combination of SNPs shown below:















SNP ID
Location
base




















1
rs1538975
228,863,377
intron 1/2
G


2
rs3738401
228,865,300
Exon 2
G


3
Novel SNP
228,865,369
Exon 2
C


4
rs1954175
228,890,415
intron 3/4
A


5
rs2273890
228,966,053
intron 7/8
T


6
rs1407598
228,981,830
intron 8/9
A


7
rs6675281
228,989,104
Exon 9
C


8
rs1000731
228,998,496
intron 9/10
G


9
rs821653
229,161,892
intron 10/11
T


10
rs821616
229,179,608
Exon 11
A


11
rs3524
229,193,684
intron 11/12
C


12
rs3737597
229,207,839
Exon 13
G









Where the physical location is based on build 34 of NCBI. db SNP is availale from the website named ncbi.nlm.nih.gov/SNP/.

In the present specification, the risk haplotype is denoted as HP1. The haplotype HP1 is over-transmitted to affected individuals with psychiatric disorder such as bipolar disorder, especially, in female patients.
Accordingly, the present invention further provides a method for diagnosing or predicting susceptibility to a psychiatric disorder in an individual, which comprises determining the presence or absence of the haplotype HP1 in the individual. It is well known to the art that the procedure to determine the presence or absence of a haplotype in the individual.
In further aspect of the present invention, confirming molecular diversity and/or subcellular distribution of DISC1 may be used for screening an agent for the treatment of psychiatric disorders.



BRIEF DESCRIPTION OF THE DRAWINGS
FIGS. 1A-1B Subcellular distribution of DISC1
FIG. 1A wtDISC1 was distributed predominantly in the perinuclear regions of the COS-7 cells, especially in the centrosome. In contrast, mutDISC1 was distributed widely in the cytoplasm. A unique redistribution of wtDISC 1 from the discrete perinuclear regions to diffuse organization in the cytoplasm occurred when wtDISC 1 is co-expressed with mutDISC 1.
FIG. 1B Redistribution of wtDISC1 by co-expression of mutDISCl was observed in a glycerol density gradient.
FIGS. 2A-2D Dominant-negative effects of mutDISC 1
FIG. 2A Co-immunoprecipitation of exogenous wtDISC1-HA/wtDISC1-myc, wtDISC1-HA/mutDISC1-myc, or mutDISC1-HA/mutDISC1-myc in HEK293 cells. Both wt and/or mutDISC1 self-associate. GAPDH-myc did not co-immunoprecipitate with wtDISC1-HA. An anti-myc antibody and -HA antibody were used for precipitation and Western blotting, respectively.
FIG. 2B Domain mapping for DISC1 self-association. A series of DISC1 mutants with HA- tag depicted in the lower panel were tested for co-immunoprecipitation with an anti-HA antibody. Immunoprecipitates were analyzed on SDS-PAGE, followed by Western blotting with an anti-myc antibody. The putative self-interacting region comprises amino acids 403-536 of DISC1.
FIG. 2C DISC 1 self-associates via direct protein-protein binding. GST- and His-tagged DISC 1 protein fragments (amino acids 347-600) co-precipitate with glutathione-beads.
FIG. 2D Co-immunoprecipitation of endogenous DISC 1 with HA-tagged mutDISC 1, but not HA-GAPDH, in differentiated PC12 cells. Immunoprecipitation with an anti-HA antibody was followed by analysis of the immunoprecipitates on SDS-PAGE and Western blotting with an antibody against the C-terminal domain of DISC1 (the domain deficient in mutDISC1)
FIGS. 3A-3D Requirement of DISC1 for neurite outgrowth in differentiating PC12 cells
FIG. 3A Influence of shRNA (RNAi#l, #2) on DISC1 protein levels in HeLa cells was evaluated by Western blotting. RNAi#1 and #2 suppress 90% and 40% of DISC1 expression, respectively.
FIG. 3B Suppression of DISC1 by shRNA in PC12 cells. The representative images were depicted 3 days after transfection of RiNAi#l or RNAi#2. Red: DISC1, Green: co-transfected GFP.
FIG. 3C Representative morphology of PC12 cells expressing RNAi#1, RNAi#2, or RNAi control with GFP.
FIG. 3D Percentages of PC12 cells harboring neurites 3 days after transfection of mock vector, RNAi control vector, RNAi#1, RNAi#2, wtDISC 1, mutDISC 1, or RNAi#1 with wtDISDC1 RNAi#1 effectively suppresses neurite outgrowth (#p<0.001, ##p<0.001). RiNAi#2 has a lesser effect compared with RNA#1. Furthermore, co-expression with wtDISC1 rescues neurite outgrowth from the effects of RNA#1 (*p<0.005). MutDISC1 has a similar effect to RNAi#2 at suppressing neurite outgrowth (**p<0.05).
FIGS. 4A-4B. Characterization of human DISC1 protein.
FIG. 4A Western blotting of human autopsied brains, HeLa cells, and SH-SY5Y cells with an anti-DISC1 antibody (C2). DISC1 was expressed in two distinct bands at 95-100 kDa and 70-85 kDa in human brains. The signal from 70-85 kDa was subdivided into three categories: A major band in the middle at 75-85 kDa occurred in all the samples, with an additional upper signal in HeLa cells and a minor lower signal in HeLa cells and human brains. Similar results were obtained from antibodies from Drs. Millar and Katayama. FIG. 4B Mass spectrometry profile of the 75-85 kDa signal. The75-85 kDa protein was enriched by immunoprecipitation with an anti-DISC1-C2 antibody, and analyzed by mass spectrometry. The peptide fragments corresponding to DISC 1 were obtained, and correspond to SEQ ID NO:61 (OCGLDSR;position 85-91), SEQ ID NO:62 (SAAAPTVTSVR;position102-112), SEQ ID NO:63 (GGTRLPDR;position124-131), SEQ ID NO:64 (RDWLLQEK;position 455-462) and SEQ ID NO:65 (QQLQK;position 463-467).
FIGS. 5A-5B. A pool of DISC1 in the nucleus.
FIG. 5A DISC1 in the crude nucleus obtained by a classic method. In human autopsied brains, the DISC1 signal at 95-100 kDa was exclusively enriched in the postnuclear supematant (S), but the signal at 75-85 kDa occurred in both the crude nuclear pellet (P) and S fractions.
FIG. 5B DISC1 in a fraction enriched with nuclear transcription factors. In HeLa cells and SH-SY5Y cells, the major band at 75-85 kDa focused in the present study was distributed in both the nuclear fraction (N) and the cytosolic fraction (C). α-tubulin, and PARP were used for cytosolic and nuclear markers, respectively.
FIG. 6. Characterization of the P and S fractions from human autopsied brains by a variety of organelle markers. The markers for cytoplasm (GAPDH), mitochondria (cytochrome c oxidase, COX), postsynaptic density (PSD) occur almost exclusively in the S fraction. In contrast, Histone H1, a nuclear protein, is exclusively enriched in the P fraction. g-tubulin, the centrosome marker, is recovered almost equally in the S and P fractions.
FIGS. 7a-7b. No change in the level of DISC1 in the total homogenates among patient brains with schizophrenia (SZ), bipolar disorder (BP), and major depression (MD) as well as control (NORM) brains. Relative ratios to the intensity of the band from one control sample were plotted. Dots represent the data from individual samples. Mean values ± SD were depicted.
FIG. 8. Aberrant subcellular distribution of DISC1 in patient brains with SZ and MD. Subcellular distribution of DISC1 in human brains was analyzed using the protocol of subcellular fraction, which was characterized in FIGS. 5A and 6. The signal ratio of DISC1 from the P fraction to the S fraction (the P: S ratio) was increased in patient brains with SZ and MD group (p=0.018 and 0.009, respectively). Dots represent the data from individual samples. Mean values ± SD were depicted.
FIG. 9. The P:S ratio of DISC1 was not influenced by postmortem delay, brain pH, and storage time of frozen brains, age at sample collection, life-time dosage of neuroleptics, and relative mass of brain.
FIGS. 10A-10C. Schematic presentation of SNPs in DISC1 gene
FIG. 10A Exon/intron structure of DISC1 gene with the location and identification of SNPs studied here was depicted. NOVEL indicates the SNP we identified by the direct sequencing. The SNPs that lead to amino acid variation were indicated.
FIG. l0B The SNPs analyzed in this study. The identification number, location, and possible changes of deduced amino acid of each SNP were summarized. The physical location (bp) was based on build 34 of NCBI.
FIG. l0C Haplotype HP 1 and HP 2
FIGS. 11A-11B DISC1 expression in human lymphoblasts at mRNA and protein levels FIG. 11A Expression of DISC1 at mRNA level in human lymphoblasts. Independent portions of DISC1 (between exons 4 and 5 as well as exons 8 and 9) were amplified by RT-PCR from both HeLa cells and human lymphoblasts (LB). Both amplifications suggest higher levels of DISC1 expression in HeLa cells than in lymphoblasts.
FIG. 11B Expression of DISC1 at protein level in human lymphoblasts. DISC1 protein was analyzed in Western blotting by using two anti-DISC1 antibodies with independent epitopes, leading to similar results. The result of the antibody against the portion of DISC1 against 594- 854 amino acids was shown. Two distinct signals at 90-95 kDa and 70-80 kDa, indicated by arrows, were observed.
FIGS. 12A-12C DISC1 haplotype and gene expression: gender difference
FIG. 12A Comparison of DISC1 expression between affected subjects with the overtransmitted risk haplotype (BP-HP1) and unaffected with the undertransmitted haplotype (NON-HP2). Decreased DISC1 expression was observed in BP-HP1 compared with NON-HP2 (p=0.006).
FIG. 12B Comparison of DISC1 expression between BP-HP1 and NON-HP2 in female subjects. Marked decrease in DISC1 expression was observed in BP-HP1 (p=0.001).
FIG. 12C Comparison of DISC1 expression between BP-HP 1 and NON-HP2 in male subjects. No significant difference in DISC 1 expression was observed between two groups.
FIG. 13 Antibodies against human and rodent DISC1



DETAILED DESCRIPTION OF THE INVENTION
The present inventor has found that DISC1 protein could self-associate. Such self-association occurs between wtDISC1 and wtDISC1, mutDISC1 and mutDISC1 as well as wtDISC1 and mutDISC1.
The present inventor also found that mutDISC1 protein changes subcellular localization of wtDISC1. As a result, wtDISC1 loses its original subcellular distribution at the centrosome and displays a distribution almost equivalent to that of mutDISC1. This observation is confirmed by both cell staining and biochemical methods using glycerol gradient.
These results indicate that mutDISC1 functions as dominant negative, which mean loss of engdogeneous wtDISC1 function.
Further, the present inventor found that the suppression of wtDISC1 levels either by dominant negative function of mtDISC1 and/or RNAi leads to inhibition of neurite outgrowth.
The link between loss of DISC1 function and inhibition of neurite outgrowth indicates that the impaired function of DISC1 may be implicated for the microtuble actions.
DISC1 protein in a well-characterized set of autopsied brains, including brains of patients with schizophrenia, bipolar disorder, and major depression, as well as normal control brains were biochemically analyzed an isoform of DISC1 at 75-85 kDa was identified. Said isoform corresponds to DISC1 isoforms including exons 2 and 5.
Subcellular fraction of the isoform was examined and an increase in the ratio of the crude nuclear fraction (P fraction) to the postnuclear cytosolic fraction (S fraction) of DISC1 from brains of patients with SZ or those with substance abuse were observed. The P fraction excludes marker proteins from the cytosol, the mitochondria, and the postsynaptic density. The microtubules are recovered in both cytosolic and centrosome fractions, both of which are not enriched in the P fractions. In contrast, histone H1, a nuclear protein, is exclusively enriched in the P fraction. Accordingly, it can be concluded that the increase in the ratio of P to S fractions reflects the increase of DISC1 in the nucleus.
Considering the fact that total level of DISC1 unchanged, the increased levels of nuclear DISC1 may suggest the decrease in other pools of DISC1, especially in microtubles.
The inventor demonstrated that the levels of DISC1 expression at both mRNA and protein levels in lymphoblasts in bipolar disorder (hereinbelow “BP”) subjects were lower than those in unaffected family controls. Based on association studies with DISC1, a haplotype over-transmitted to affected BP females, who showed lower levels of DISC1 expression was identified. Furthermore, correlation of clinical features of affected subjects to the levels of DISC1 expression was revealed.
In another aspect of the invention, a family-based association study of DISC1 and bipolar disorder in 57 bipolar pedigrees was conducted. In addition, DISC1 expression in human lymphoblasts at both mRNA and protein levels were examined. The correlation of several clinical features with the levels of DISC1 expression was studied.
Haplotype analysis identified one haplotype (HP1) that was overtransmitted to the BP phenotype (p=0.01) and a second haplotype that was undertransmitted (HP2). There was evidence of gender influence in the transmission distortion, with overtransmission of HP1 to affected females (p=0.004). There was a significant decrease in DISC1 expression in affected HP1 group compared to cell lines derived from unaffected subjects with the HP2 (p=0.006). This difference was more pronounced in females (p=0.001). Further, there is evidence to suggest that an earlier age of first manic episode and higher number of manic symptoms correlate with lower levels of DISC1 expression (p=0.008). Accordingly, it can be concluded that decreased levels of DISC1 expression, associating with the risk haplotype, may be implicated in the pathophysiology of bipolar disorder, especially in females.
Taken togeteher, these results can also suggest that decrease or loss of DISC1 function or levels can lead to psychiatric conditions.
EXAMPLES 1 and 2
Materials and Methods
Reagents and Antibodies
All reagents were from Sigma, Invitrogen except as indicated. Protein concentration was determined by using the BCA Protein Assay Reagent (PIERCE Biotechnology). Preparation of antibodies against DISC1 has been described (Ozeki et al., 2003). An affinity-purified rabbit antiserum against GFP (Molecular Probe) was used to visualize morphology of GFP-transfected PC12 cells in the neurite outgrowth assay. The vector system for shRNA was used to suppress endogenous DISC1 protein expression (Brummelkamp et al., 2002; Yu et al., 2002).
In this study, we produced 7 shRNA plasmids and selected two representative ones with the following sequences for the present study: RNAi#1 with strong suppression, 5′-GGCAAACACTGTGAAGTGC-3′ (SEO ID NO:1); RNAi#2 with milder suppression, 5′-CGGCTGAGCCAAGAGTTGG-3′ (SEQ ID NO:2). Small oligonucleotides synthesized to the corresponding DISC1 sequences for siRNA were from Dharmacon RNA Technologies.
Cell culture, staining and neurite outgrowth assay
PC12 cells were maintained in Dulbecco's Modified Eagle Medium (DMEM) with 10% fetal bovine serum (FBS) and 5% horse serum (HS). Differentiation was initiated by the addition of 50 ng/ml of nerve growth factor (NGF) with culture medium changed to DMEM with 1% FBS and 1% HS. NGF was supplemented daily after differentiation. COS-7 and HeLa cells were maintained in DMEM with 10% FBS.
Transfection of expression constructs or RNAi constructs was carried out with Lipofectamine 2000 (Invitrogen) for PC12 cells, and COS-7 cells, and Polyfect Transfection Reagent (Qiagen) for HeLa cells.
Cell staining was carried out as described (Sawa et al., 1999). In brief, cells were fixed with 3.7% paraformaldehyde in PBS, and permeabilized with 0.1% Triton X-100. For some staining, ice-cold methanol at −20° C. was used as fixative.
Neurite outgrowth assay was performed as described (Ozeki et al., 2003). In brief, neurite outgrowth was evaluated by the percentage of cells with processes longer than three cell body diameters. The length of the longest process of each neurite-harboring cell was measured. In this study, we added a minor modification: to obtain clearer images of cell morphology, cells co-transfected with various expression or RNAi constructs with the GFP construct were stained with an anti-GFP antibody. A confocal microscope (Zeiss LSM 410) was used for epifluorescent image collections. A Zeiss Axiovert 135 microscope mounted with a charge-coupled device (CCD) camera (Roper Scientific CoolSnap HQ cooled 12 bit, Roper Scientific, Trenton, N.J.) was used to obtain PC12 cell images in the neurite outgrowth assay. Cell morphology was analyzed in a blinded manner. Statistical analyses were conducted by using a one-way ANOVA.
Biochemistry
Cell extraction: cells were homogenized or solubilized in ice-cold lysis buffer (0.32 M sucrose, 50 mM HEPES, pH 7.4, 5 mM MgCl2, 5 mM 1,4-dithiothreitol (DTT), 1 mM phenylmethane sulfonylfluoride (PMSF), 1 mM EDTA, 1% Triton X-100, and a protease inhibitor mixture (Roche)). Immunoprecipitation: cells were lysed in a RIPA buffer (50 mM HEPES, pH 7.4, 150 mM NaCl, 5 mM MgCl2, 5 mM DTT, 1 mM PMSF, 1 mM EDTA, 1% Triton X-100, protease inhibitor mixture), and supernatant fractions obtained after centrifugation at 10,000×g for 15 min were incubated with primary antibodies and protein A agarose (Oncogene). The immunoprecipitates were analyzed with SDS-PAGE followed by Western blotting. ProFoundTM Mammalian HA Tag IP/Co-IP Kit and ProFoundTM Mammalian Co-Immunoprecipitation Kit (PIERCE) were also used for immunoprecipitation.

In vitro binding assay: GST and His-tagged recombinant DISC1 protein fragments (amino acids 350-600) were incubated in 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, and 0.1 mg/ml bovine serum albumin (BSA) for 1 h. His-tagged DISC1 bound to GST-tagged DISC1 was precipitated with glutathione Sepharose beads. The protein precipitates were analyzed with SDS-PAGE, followed by Western blotting with an antibody against His-tag.

Subcellular fraction was performed as described (Sawa et. al., 1997).

Glycerol Density Gradient Centrifugation and Centrosome Isolation

Cells with HA-tagged wtDISC1 and/or myc-tagged mutDISC1 were lysed in a buffer (20 mM HEPES, pH 7.4, 1% Triton X-100, 1 mM EDTA, 150 mM NaCl, 1 mM DTT, and protease inhibitor mixture), and centrifuged at 3,000×g for 10 min. The supernatant fractions were loaded on top of 4 ml of a 10-25% continuous glycerol gradient and centrifuged at 20,000×g for 24 h. Each fraction was analyzed by Western blotting with anti-HA or myc antibodies. Centrosome isolation was as described (Mohammed and Michel, 1998). Statistic analyses were conducted by using a one-way ANOVA followed by post hoc test.

EXAMPLE 1
Cellular Distribution of DISC1 Protein: Re-Distribution of wtDISC1 Protein in the Presence of mut DISC 1 Protein and Dominant Negative Function of mutDISC1
To examine the effect of mutDISC1, wt and mutDISC1 were expressed individually or together in COS-7 cells. wtDISC1 occurred selectively in the perinuclear regions, in contrast to the more diffuse cytoplasmic distribution of mutDISC1, as we and others have previouisly demonstrated (Morris et al., 2003; Ozeki et al., 2003). A significant change in subcellular distribution of wtDISC1 was observed upon co-expression of mutDISC1: wtDISC1 became distributed more diffusely in the cytoplasm (FIG. 1A). In contrast, the distribution of mutDISC1 was unchanged even after co-expression with wtDISC1. This result suggests that mutDISC1 disturbs the normal subcellular localization of wtDISC1; that is, it interferes with the normal and critical function of wtDISC1. This observation was confirmed by the glycerol gradient method (FIG. 1B) and subcellular fraction (data not shown).
DISC1 contains coiled-coil domains in the middle portion of the molecule, most of which are retained in mutDISC1. Thus, the inventor hypothesized that self-association of DISC1 might underlie the cellular effect of mutDISC1. To test this hypothesis, wt and mutDISC1 proteins with myc or HA-tag were expressed in HEK293 cells, and immunoprecipitates with an anti-myc antibody were analyzed. The results indicated that indeed DISC1 self-associated, and that mutDISC1 could bind to wtDISC1 (FIG. 2A). A series of DISC1 deletion mutants revealed that amino acids 403-536, which harbor a well-conserved colied-coil domain, are essential for DISC1 self-association (FIG. 2B). Exogenous mutDISC1 in differentiated PC12 cells is co-immunoprecipitated with endogenous DISC1 (Supplemental FIG. 2). The self-association is as the result of its direct protein interaction, as confirmed by in vitro binding experiments with purified glutathione-S-transferase (GST)- and His-tagged DISC1 proteins (FIG. 2C).
Taken together, these results suggest that mutDISC1 acts in a dominant-negative fashion by associating with wtDISC1.
EXAMPLE 2
Confirmation of functional alteration of DISC1 by using “Newrite Outgrowth Assay”
The inventor has already reported that transient overexpression of mutant DISC1 in PC12 cells reduces neurite extension. In the present invention, we introduced RNA interference (RNAi) technique to modulate the expression levels of endogenous DISC1 protein in PC12 cells, and succeeded to reduce its expression. Plasmids encoding short hairpin RNA (shRNA) against several portions of DISC1 were tested, and two representative ones were chosen for the following functional studies: the strong suppressor (RNAi#1) and milder suppressor (RNAi#2). Their potency was initially tested with Western blotting in HeLa cells co-transfected with the expression construct of rat DISC1 and a DISC1 RNAi plasmid, which did not interfere with endogenous human DISC1. RNAi#l and RNAi#2 displayed 90 and 40% suppression against rat DISC1, respectively, when compared with sets of control RNAi plasmids containing unrelated sequences (FIG. 3A). Marked suppression of endogenous DISC1 by RNAi#l was confirmed in differentiated PC12 cells by immunofluorescent cell staining (FIG. 3B) as well as Western blotting (data not shown). Synthetic oligonucleotides for small interfering RNA (siRNA) with the DISC1 sequences corresponding to RNAi#l and #2 led to similar results (data not shown). We observed dramatic inhibition of neurite outgrowth in differentiating PC12 cells with the strong suppressor, RNAi#l (FIGS. 3C, D) The disturbance of neurite outgrowth was unrelated to cell death and no signs of apoptotic nuclei were observed in cells with RNAi (data not shown). The effect of RNAi was correlated with the levels of DISC1 suppression, as RNAi#l showed a much more marked inhibition of neurite outgrowth than did RNAi#2. As co-transfection of the expression construct of wtDISC1 normalized the inhibition of neurite outgrowth by RNAi#1, the effect of DISC1 RNAi could be attributed to the direct suppression of DISC1 (FIG. 2D). Suppression of DISC1 or overexpression of mutDISC1 both impair neurite outgrowth, consistent with the notion that mutDISC1 functions in a dominant negative fashion (FIG. 2D).
EXAMPLE 3
A Form of DISC1 Enriched in the Nucleus has Altered Subcellular Distribution in Schizophrenia Brains
Materials and Methods
Brains. Human postmortem orbital cortices from normal controls as well as patients with schizophrenia, bipolar disorder (BP), and major depression (MD) were obtained from the Stanley Foundation Brain Collection. Each group had 15 subjects. Detailed information of the original set of subjects has been previously described (Torrey et al 2000).

Chemicals. All reagents were purchased from Sigma (St. Louis, Mo.) except as indicated. Protein concentrations were determined by using the bicinchoninic acid protein assay kit (Pierce, Rockford, Ill.).

Antibodies. Preparation of an immuno-purified anti-DISC1 antibody was described previously (Ozeki et al 2003). In brief, the antibodies were raised against a portion of DISC1 (601-854 (C2)) tagged to glutathione S-transferase. The dilutions of antibodies used in this study were as follows: DISC1-C2, 1: 250; Histone H1 (Santa Cruz biotechnology, Santa Cruz, Calif.), 1: 100; poly-ADP polymerase (PARP) (BD Biosciences Pharmingen, San Diego, Calif.), 1:250; PSD95 (Zymed Laboratories, South San Francisco, Calif.), 1:500; γ-tubulin (Sigma, St, Louis, Mo.), 1: 10,000; α-tubulin (Sigma, St, Louis, Mo.), 1:4,000; cytochrome c oxidase (Molecular Probes, Eugene, Oreg.), 1: 50; and glyceraldehyde-3-phosphate dehydrogenase (Sawa et al 1997), 1: 2,000.

Mass spectrometry. HeLa cells were lysed in RIPA buffer (150 mM NaCl, 10 mM Tris-HCl, pH 7.5, 1% Nonidet P-40, 0.1% SDS, and 0.5% sodium deoxycholate) containing a protease inhibitor (CompleteTM) (Roche Applied Sciences, Indianapolis, Ind.), mixture. The solubilized proteins were subjected to immunoprecipitation as described previously (Sudoh et al 1998) using anti-DISC1-C2 antibody (11), and the precipitated proteins were subjected to SDS-PAGE. The major band of DISC1 at 75-85 kDa was visualized by Coomassie staining. Gel-purified DISC1 at 75-85 kDa was tryptic digested and analyzed by MALDI-TOF mass spectrometry (Voyger DE STR, Applied Biosystems) in the mass spectrometry facility at Johns Hopkins University School of Medicine. Peptide Mass was analyzed using the programs Peptide Mass (http://au.expasy.org/tools/peptide-mass.html) and MS-Digest (http://prospector.ucsf.edu/ucsfhtml4.0/msdigest.htm).

Subcellular fraction. A classic method of subcellular fraction was used for autopsied human brains and HeLa cells (Sawamura et al 2001, Gu et al 2001). In brief, 0.1 g of tissues or cells were homogenized in a ice-cold buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, Protease inhibitors (CompleteTM), using a motor-driven Teflon homogenizer. The homogenates containing equal amounts of protein were centrifuged at 800×g for 10 min at 4° C. to obtain a crude nuclear pellet (P) and postnuclear supernatant (S).

For further analysis of nuclear fractions, we used a standard protocol to enrich for transcription factors with minor modifications (Andrews et al 1991, Hua et al 1996). Cell homogenates from HeLa and SH-SY5Y cells were lysed in buffer A (10 mM HEPES, pH 7.9, 1.5 mM MgCl2, 10 mM KCl, 1 mM DTT, and protease inhibitors (CompleteTM) were centrifuged at 2,300×g for 2 min at 4° C. The pellet was resuspended in buffer A containing 0.1% Nonidet-P, centrifuged at 1,500×g, and the cytoplasmic supernatant was collected. The pellet was resuspended in buffer C (20 mM HEPES, 25% glycerol, 420 mM NaCl, 1.5 mM. MgCl2, 1 mM DTT, and protease inhibitors (CompleteTM) were centrifuged at 16,000×g for 15 min at 4° C. The final supernatant is considered to be a nuclear fraction with enriched in transcription factors (Andrews et al 1991, Hua et al 1996).
Western blotting. A standard protocol previously described was employed with minor modifications (Sawamura et al 2004). Proteins were separated using Novex Tris-Glycine gel (Invitrogen, Carlsbad, Calif.) and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Bedford, Mass.). Nonspecific binding was blocked with 5% fat-free milk in phosphate-buffered saline containing 0.1% Tween 20. The blots were then incubated with primary antibodies overnight at 4° C. For the detection of both monoclonal and polyclonal antibodies, appropriate peroxidase-conjugated secondary antibodies were used in conjunction with enhanced chemiluminescence (Amersham Biosciences, Piscataway, N.J.) to obtain images saved on film.

Statistical analysis. Statistical analysis was carried out using Stat View computer software (Macintosh, version 5.0; Abacus Concepts Inc., Berkeley, Calif.). One-factor analysis of variance (ANOVA) was used for the initial assessment among groups. When a significant difference was obtained, post hoc comparison with the Bonferroni-Dunn test was used to identify the specific group differences.

The influence of demographics and other variables from brains from the Stanley Foundation on DISC1 was examined by Pearson's correlation coefficients for continuous variables as well as by two-tailed Student's t-test or one-factor ANOVA for categorical variables. Post hoc comparison with Tukey-Kramer test and two-tailed Student's t-test was used to examine differences among the specific groups. Probability values (p value) below 0.05 were considered to be statistically significant. All values were described as means and standard deviation (SD).
Results
3.1 DISC1 protein in human autopsied brains.
Protein expression of DISC1 in human autopsied brains was analyzed by Western blotting, and compared with that in human cell lines of HeLa and SH-SY5Y cells (FIG. 4A). DISC1 is expressed in two distinct bands at 95-100 kDa and 70-85 kDa in human brains, which resembles the profiles in rodent brains previously reported by our group and others (Miyoshi et al 2003, Ozeki et al 2003, Brandon et al 2004). Similar to rodent brains, the signal at 70-85 kDa was much more intense than that at 95-100 kDa. The signal at 95-100 kDa has been thought to represent authentic full-length DISC1, as it is detected by multiple antibodies against DISC1, with the expected protein size of 854 or 832 amino acids from DISC1 open reading frame (Miyoshi et al 2003, Ozeki et al 2003, James 2004). In contrast, the molecular identify of the 70- 85 kDa signal still remained elusive.
The signal from 70-85 kDa was subdivided into three categories (FIGS. 4A, 5). A major band in the middle at 75-85 kDa occurs in human brains, HeLa, and SH-SYSY cells. An upper signal was observed in HeLa cells and a minor lower signal in HeLa cells and human brains. In the present study, we focused our analyses on the major signal at 75-85 kDa. To characterize the 75- 85 kDa signal directly, we used HeLa cell extracts with protein chemistry that combined immunoprecipitation and mass spectrometry. Immunoprecipitation of HeLa cells with an anti-DISC1 antibody leads to enrichment of the 75-85 kDa signal to the levels detectable by Coomassie staining (data not shown). The enriched protein was analysed on SDS-PAGE, excised from the gel, and digested with trypsin. The obtained fragments were analysed by mass spectrometry. We found five independent fragments that were derived from DISC1 sequences from the profiles of mass spectrometry (FIG. 4B). No signal corresponding to DISC1 was obtained when we used pre-immune sera for the immunoprecipitation (data not shown).
3.2 Nuclear Enrichment of a Form of DISC1.
Previous reports have suggested that DISC1 may have more than one subcellular pool (Miyoshi et al 2003, Ozeki et al 2003, Morris et al 2003, James et al 2004). DISC1 contains evolutionally well-conserved nuclear localization signals in the open reading frame (Ma et al 2002), suggesting its potential role in the nucleus. Thus, we conducted subcellular fraction, paying particular attention to its possible nuclear pool.
A classic method of subcellular fraction (Sawamura et al 2001, Gu et al 2001) was used for an initial estimation. In human autopsied brains, the DISC1 signal at 95-100 kDa was exclusively enriched in the postnuclear supernatant (S), but the signal at 75-85 kDa occureed in both the crude nuclear pellet (P) and S fractions (FIGS. 5A). DISC1 at 75-85 kDa occurs in both the P and S fractions. We further characterize the S and P fractions from human autopsied brains by variety of organelle markers (FIG. 6). The markers for cytoplasm, mitochondria, and postsynaptic density occur almost exclusively in the S fraction In contrast, Histone H1 is exclusively enriched in the P fraction. v-tubulin is recovered almost equally in the S and P fractions. In conclusion, the P fraction is an enriched nuclear fraction, with some contamination of the centrosome. These results suggest that a form(s) of DISC1 at 75-85 kDa may exist in the nucleus.
To obtain further information about nuclear DISC 1, we used an established protocol for enrichment of nuclear transcription factors (Andrews et al 1991, Hua et al 1996). In HeLa and SH-SY5Y cells, substantial enrichment of a form(s) of DISC1 at 75-85 kDa was observed in the nuclear fractions (FIG. 5B).
3.3 Aberrant Subcellular Distribution of DISC1 in Brains from Patients with Major Mental Illnesses.
To analyze the disposition of DISC1 in human brains, especially in brains from patients with psychiatric conditions, we used the well-characterized brain sets from the Stanley Foundation Brain Collection (Torrey et al 2000). The brain set contains four groups of brains from 15 normal subjects, 15 patients with SZ, 15 patients with bipolar disorder (BP), and 15 patients with major depression (MD).
First, we addressed the levels of DISC1 protein in total brain homogenates. No significant differences in the total levels of DISC1 protein among four groups were observed in both 95-100 kDa and 75-85 kDa signals (p=0.5093 and 0.2409, respectively by one-factor ANOVA) (FIG. 7).
Second, we focused on subcellular distribution of DISC1 in these brains. To evaluate semi-quantitatively the fraction of DISC1 in the crude nucleus, we examined the signal ratio of DISC 1 at 75-85 kDa from the P fraction compared to the S fraction (the P:S ratio) in the subeellular fraction that was characterized above (FIG. 5A and FIG. 6). Of interest, a significant difference in the P:S ratio is observed among the four groups (p=0.0398 by one-factor ANOVA). Post hoc comparison by using the Bonferoni-Dunn test reveals that the P:S ratio in SZ and MD groups are significantly increased in comparison with that of the control group (p=0.018 and 0.009, respectively) (FIG. 8).
The P: S ratio seems not to be influenced by the process used to obtain autopsied brains, as evidenced by no effects of postmortem delay, brain pH, and storage time of frozen brains (FIG. 9). Age at sample collection, life-time dosage of neuroleptics, and relative mass of brain also have no effects on the ratio (FIG. 9).
3.4 Influence of Substance Abuse on Subcellular Distribution of DISC1 in Autopsied Brains.
Furthermore, this P: S ratio of DISC1 is significantly associated with the history of substance abuse (p=0.0005) (Table 1). To examine whether the increases in the ratio in SZ and MD groups are influenced by histories of substance abuse, Tukey post hoc test was performed for all four groups. The increase in the ratio in SZ is unrelated to current substance abuse, but the increase in the ratio in BP is related to substance abuse (p<0.05).
The P: S ratio is also significantly associated with severity of substance abuse (p=0.002) (Table 1). The impact of the severity of substance abuse on the P: S ratio was tested by unpaired t-test. There is no impact of the severity on the ratio in SZ, but in MD, is significantly influenced (p=0.433).
Effect of gender, Hemisphere, Psychosis, substance abuse, and alcohol abuse on P:S ratio.














Parameter
Groups
Mean ± SD

P value







Gender
Male (n = 36)
0.939 ± 0.317





Female
1.002 ± 0.297
 {close oversize parenthesis} 
0.444 (t-test)



(n = 24)


Hemisphera
Right
0.867 ± 0.260



(n = 27)

 {close oversize parenthesis} 
0.026* (t-test)



Left (n = 33)
1.044 ± 0.325


Psychosis
With (n = 26)
1.021 ± 0.246



Without
0.920 ± 0.246
 {close oversize parenthesis} 
0.212 (t-test)



(n = 34)



History of substance abuse
Never (n = 37)
0.865 ± 0.217



Past (n = 8)
0.953 ± 0.214
 {close oversize parenthesis} 
0.0005*** (one-factor ANOVA)



Current (n = 15)
1.215 ± 0.402


Severity of substance abuse
Lowest (n = 41)
0.890 ± 0.221



Lower (n = 1)
0.550



Low (n = 2)
0.880 ± 0.028




High (n = 6)
0.970 ± 0.328
 {close oversize parenthesis} 
0.002** (one-factor ANOVA)



Higher (n= 4)
1.215 ± 0.297



Highest (n = 5)
1.388 ± 0.525


Severity of alcohol abuse
Lowest (n = 13)
0.835 ± 0.198



Lower (n = 19)
0.888 ± 0.265



Low (n = 4)
0.837 ± 0.293



High (n = 7)
0.991 ± 0.268
 {close oversize parenthesis} 
0.065 (one-factor ANOVA)



Higher (n = 4)
1.018 ± 0.187



Highest (n = 6)
1.265 ± 0.507









EXAMPLE 4
Differential expression of DISC1 in bipolar disorder: evidence of sex effect
Subjects
The research subjects for this study were taken from a large ongoing linkage study in BP (McInnis et al 2003). Briefly, these multiplex pedigrees (the Hopkins/Dana pedigrees) were ascertained on the presence of a treated BPI proband with 2 affected first-degree relatives, affection status included BPI, BPII, recurrent major depression, and schizoaffective disorder, manic type. The recent genome-wide scan of these pedigrees identified a susceptibility locus on 1q41, the peak marker, D1S549 was 12 Mb centromeric from the DISC1 gene, however the region of significance is broad and encompasses the DISC1 gene. Similarly, the 1q42 peak identified by Macgregor et al (Macgregor et al 2004) was centromeric from DISC1.
From the larger collection, there were 57 BP pedigrees selected for genotyping. The selection aimed to include pedigrees with either both parents present, or pedigrees that included an unaffected sibling as well as 2 affected siblings. Therefore, there were up to 5 subjects typed from each family. The total sample consisted of 297 subjects genotyped and is described in detail in Table 2.







TABLE 2







Subjects (57 families) in this study: originally


ascertained for genetic linkage analyses











Total
Male
Female
















BPIa
62
29
33



BPIIb
50
24
26



RUPc
35
12
23



SAMd
5
3
2



Unaffected
64
26
38



Uncertain
81
46
35



Total
297
140
157







aBipolar I



bBipolar II



cRecurrent unipolar disorder



dSchizoaffective manic






Direct Sequencing

DNA from 10 bipolar subjects was chosen to identify polymorphisms in the DISC1 gene. They were selected from pedigrees with the strongest evidence for linkage to chromosome 1q42, based on the output from GENEHUNTER. Each coding exon of DISC1 with 50 bp of flanking intron was amplified using primers described in table 3A. Exon 2 was too large to be amplified by a single PCR reaction, and was subsequently sequenced in 3 reactions. Most of PCR condition were the following: 80 ng of genomic DNA, 0.4 μM of each primer, 400 μM dNTPs, 1.5 mM MgCl2, 1 unit TaqDNA polymerase (invitrogen), 2.5 μl of a PCR buffer (200 mM Tris-HCl, 500 mM KCl) and up to 25 μl with sterile water. An initial denaturation step of 94° C. for 7 min was followed by 40 cycles of 94° C. for 45 sec, 55° C. for 30 sec and 72° C. for 30 sec. Detailed information for amplification is available upon request. The resulting of PCR products were purified by spin column (QIAGEN) and were preformed with BigDye Terminator cycle sequencing kit (Applied Biosystems). The purified products were sequenced using ABI PRISM 370 DNA sequencer (Applied Biosystems). The sequences were aligned using Sequencher (Gene Codes Corporation).
Genotyping
All samples were genotyped by using a 5′ exonuclease assay (TaqMan) and the ABI 7900HT sequence detection system (Applied Biosystems). For 6 single nucleotide polymorphisms (SNPs) (rs1538975, rs1954175, rs1407598, rs1000731, rs821653, rs3524) we used assays-on-Demand kits, and for the remaining of 6 SNPs we ordered custom made, Assays-by-Design kits. The sequence information of the primers and probes in this assay is described in Table 3B. Assays (25 μl) were carried out on about 10 ng genomic DNA according to manufacture's instructions. PCR reactions were done on GeneAmp PCR system 9700 and fluorescence signals were detected on ABI 7900HT.







TABLE 3





Primer information used in the study







A. Primer sequencing for direct sequencing











product




Exon
size
Forward primer sequence (5′-3′)
Reverse primer sequence (5′-3′)





1
331
GAC TCG CTG AGG AGA AGA AAG
GGT TGT TAA CAG AGG CAC GC




(SEQ ID NO:3)
(SEQ ID NO:4)


 


2 part 1
458
TTC TCC AGA TGC AGT TCC AGC
TAT CCA TGG CTG CAA ACT CTT




(SEQ ID NO:5)
(SEQ ID NO:6)


 


2 part 2
496
CAG CCC CTA CTG TGA CCT CTG T
AAG ACT GAA GGG CCG AGA GAG AC




(SEQ ID NO:7)
(SEQ ID NO:8)


 


2 part 3
485
GAA CGT GGA GAA GCA GAA GG
GGA AGT CAG TTG AGC CCA GA




(SEQ ID NO:9)
(SEQ ID NO:10)


 


3
283
GAA ACT AAT GCA TCT GGC ATT GA
TGG GAC ATG ATG ACA AAA CAA T




(SEQ ID NO:11)
(SEQ ID NO:12)


 


4
253
CAC CGG GGT TAT CTA TTT TGC AT
TGA GGG GAA AAT GGT GAC AAT A




(SEQ ID NO:13)
(SEQ ID NO:14)


 


5
250
CAT GAG GAT TTC AGC TTC TGC
GCA AGA CCC TGT CTC AAA GAA




(SEQ ID NO:15)
(SEQ ID NO:16)


 


6
394
GGT GCA TAT GGC CAA TTC TC
CCA ATG AAC AGG TCA AAG AGG




(SEQ ID NO:17)
(SEQ ID NO:18)


 


7
242
GTG GAA GGT TCA CTT TTT GCA G
TGC AGA AGC CAG GTA TCC TAA G




(SEQ ID NO:19)
(SEQ ID NO:20)


 


8
249
AAT CTC TGA CCT GGC TGT TCC
ACG ATG TGC TGG TAG CTG TCA T




(SEQ ID NO:21)
(SEQ ID NO:22)


 


9
285
TCT TCC ATG TGT GTG GAT GCT G
ACT TTG CCG GGG AAC AGT TG




(SEQ ID NO:23)
(SEQ ID NO:24)


 


10
248
TCA ATC CTT TGG CTT TGA GCT T
CTG GCC AGC CTT TTT CAT CG




(SEQ ID NO:25)
(SEQ ID NO:26)


 


11
388
AGC CAG GTA GAC AAG CTA TCG
GAA TAA GGG TCC CCT CTG GAG




(SEQ ID NO:27)
(SEQ ID NO:28)


 


12
252
GTC CAC GGC ACT AAC AAG TGA T
CCA TCT TCT GAG GCA TGA AAA AC




(SEQ ID NO:29)
(SEQ ID NO:30)


 


13
291
AGA GGG CCA CGA TCA CCT TC
ATC TCC GTA ATT GAT TCA GGC A




(SEQ ID NO:31)
(SEQ ID NO:32)










B. Primers and probes in the TaqMan assays










Forward primer
Reverse primer
VIC Probe sequence
FAM Probe sequence


sequence (5′-3′)
sequence (5′-3′)
(5′-3′)
(5′-3′)














ACGAGGACCCGCGATG
ACCCGTGTAGCCAAGAGACT
TCTCTCTCAGCCCTTC
TCTCTCGGCCCTTC



(SEQ ID NO:33)
(SEQ ID NO:34)
(SEQ ID NO:35)
(SEQ ID NO:36)


 


CAGGCCGCAAGGAACAG
GGTCCATGTCTGGTAAAGAAT
ACGCTCTGGCCTGG
CACGCTCTAGCCTGG


(SEQ ID NO:37)
GCA
(SEQ ID NO:39)
(SEQ ID NO:40)



(SEQ ID NO:38)


 


CCCTCAACTTGTCACTTAAAG
AGTCAAACGAAAACTTCATAG
AAAATGGGAATATAAAG
AATGGGAATATAAAGGTG


AAATCAC
GCTTCT
GTACTTA
CTTA


(SEQ ID NO:41)
(SEQ ID NO:42)
(SEQ ID NO:43)
(SEQ ID NO:44)


 


CAACGTGCTGTAGGAAACCAT
CAGCCCTTCTCTCTCTGATGT
CTCGGTGAGGTCTTTA
TCGGTGAAGTCTTTA


TT
TAAT
(SEQ ID NO:47)
(SEQ ID NO:48)


(SEQ ID NO:45)
(SEQ ID NO:46)


 


GACTTGGAAGCTTGTCGATTG
GCTTCCCCTGGCTTCCT
CTGTAGGCACTGGATAA
CTGTAGGCTCTGGATAA


C
(SEQ ID NO:50)
(SEQ ID NO:51)
(SEQ ID NO:52)


(SEQ ID NO:49)


 


TGCTGAATTTCCTTCTAAATG
AATTCACCCCAACTTCTCTCT
ATTCTTGGGAATGTC
CATTCTTGAGAATGTC


TCACTCA
AATGG
(SEQ ID NO:55)
(SEQ ID NO:56)


(SEQ ID NO:53)
(SEQ ID NO:54)










C. Primers for RT-PCR









Exons
Forward primer sequence (5′-3′)
Reverse primer sequence (5′-3′)





4-5
ACGCGTCGACCCAGCCAGCTCTTAGCAGTTTC
AACAGCCTCGGCTCCATTCTC



(SEQ ID NO:57)
(SEQ ID NO:58)


 


8-9
GCACCCTGAGGAAGAAAGTT
TCTCTTCTCAGTCTGTTGTAATCT



(SEQ ID NO:59)
(SEQ ID NO:60)









Genetic Analysis and Statistics

Inter-marker LD and haplotype block structure were examined using the program Haploview. Association tests were then performed using the computer program FBAT (Family Based Association Test) (Horvath et al 2001). FBAT was chosen because it provides valid tests of association in the presence of linkage even when using multiple affected siblings from families of variable structure. In addition to performing tests of association for individual markers, FBAT allows for tests of association with haplotypes that may be phase ambiguous.
Expression Analysis
Lymphoblasts from patients were established with infection of Epstein Barr virus (Sawa et al 1999). Cells were maintained in RPMI1640 media with 10% fetal bovine serum, and used within 2 weeks (4 cycles of cell division) for expression analyses.
Expression of DISC1 was initially verified by RT-PCR with two sets of primers. To avoid the contamination of the amplification from genomic DNA, each pair was chosen from two independent exons (Sawa et al 1997). The primer sequences are described in Table 3C.
Expression levels of DISC1 in lymphoblasts were measured by the RNA counter kit (TrimGen, Sparks, Md.). This kit employs the isometric primer extension technology. A portion of DISC1 including both exons 6 and 7 (nucleotides 1627-1647 in the NCBI AF22980) was amplified from total RNA. The amplification over two independent exons avoids contaminated signals from genomic DNA. The amplified region was selected because this includes no genetic variability or SNP. Actin was used for an internal control of expression.
Western blotting was carried out as described (Ozeki et al 2003). Two antibodies against different portions of DISC1 (one for amino acids 354-597, the other for 598-854) were used (Ozeki et al 2003).
Clinical Data Analysis
Using the statistical software, STATA, clinical features of affected subjects with DISC1 expression data were analyzed. The broad affection status model (including BPI, BPII, recurrent major depression, and schizoaffective disorder manic type) was used for definition of affection. Linear regression was used to model DISC1 expression levels as a dependent variable in relation to various clinical features of the affected subjects.
Result
4.1 Family-Based Association Study
Sequencing of the exons from 10 probands taken from the pedigrees with most evidence of linkage identified one novel SNP (FIGS. 10A-10B). This SNP was typed in the subset of 58 BP pedigrees. Using the algorithm of Gabriel et al (Gabriel et al 2002), as implemented in Haploview, there were 3 haplotype blocks in this gene spanning approximately 200 kb. Analysis of the individual markers identified no significant association with BP disorder. Haplotype analyses using FBAT and all 12 markers identified two haplotypes with frequencies of 0.11 (H1) and 0.10 (H2). We tested several individual SNPs and various combinations of SNPs for possible haplotypes, and obtained the significance only from the total 12 marker haplotype. H1 was overtransmitted to the affected subjects (p=0.01) and H2 was undertransmitted. When considering the sex of the affected subjects, it was clear that the overtransmission was to the affected females (p=0.0044) (Table 4), there was no evidence of overtransmission of H1 to the affected males.







TABLE 4







Genetic transmission of the inclusive 12 marker haplotype of


those markers outlined in FIG. 1














Total

Female

Male















za
pb
z
p
z
p
















HP1
2.6
0.01
2.8
0.004
0.7
0.5


HP2
−1.7
0.08
−1.1
0.3
−1.9
0.06





az distribution


bp value






4.2 DISC1 Expression in Human Lymphoblasts

First, we examined expression of DISC1 in human lymphoblasts. DISC1 mRNA was addressed by reverse-transcriptase coupled PCR (RT-PCR). Two sets of primer pair were chosen from exons 4 and 5 as well as exon 8 and 9 of DISC1 gene (Table 3C). The primer selection over two independent exons can exclude contaminated signals from genomic DNA. In both amplifications, the specific signals were obtained from both HeLa cells and human lymphoblasts with a consistently lower intensity from lymphoblasts (FIG. 11A). DISC1 protein was analyzed in Western blotting by using well-characterized anti-DISC1 antibodies with independent epitopes (Ozeki et al 2003). We obtained major signal(s) at approximately 70-80 kDa, with weaker signal(s) at 90-95 kDa (FIG. 11B) an expression pattern similar to rat and human adult brains (Brandon et al 2004; Miyoshi et al 2003; Ozeki et al 2003).
Second, based on the expression profiles of DISC1 in lymphoblasts similar to those in adult brains, we examined the relationship of DISC1 haplotypes to its expression levels. Expression of DISC1 in lymphoblasts from affected subjects with the risk haplotype (HP1) (16 cases) was compared with that from unaffected family members with the under-transmitted haplotype (HP2) (11 controls). Levels of DISC1 are significantly lower in bipolar subjects with HP1 than unaffected relatives with HP2 (p=0.006) (FIG. 12A). The consistent gender influence, as observed in the transmission, exists with more remarkable suppression in females (p=0.001) (FIG. 12B). The semi-quantitative assessment of DISC1 by real-time PCR as well as Western blotting confirms this observation (data not shown).
4.3 Clinical Data Analysis
Of all the clinical features, the number of manic episodes correlates most with the decreased levels of DISC1 expression (coefficient of correlation, −0.41; p=0.008) (Table 5). Earlier age of first manic episode also tends to correlate with lower DISC1 expression. In addition, age of first hospitalization seems to correlate negatively with DISC1 expression when other factors are controlled for. Other features, including psychosis, show no significant correlation when all other factors are controlled for.







TABLE 5







Linear regression of DISC 1 expression in relation


to severity measures of mania in the clinical data of study


subjects













STD




MEASURES
COEFFICIENT
ERRORa
zb
pc














Number of manic symptoms
−0.41
0.15
−2.64
0.008


Age of 1st episode
0.24
0.13
1.92
0.06


Number of manic episodes
−0.03
0.01
−1.92
0.06


Age of 1st hospitalization
−0.27
0.12
−2.2
0.03





astandard error


bz distribution


cp value






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References shown below are herein incorporated by reference:

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    41 Millar, J. K., Christie, S., and Porteous, D. J. (2003). Yeast two-hybrid screens implicate DISC1 in brain development and function. Biochem Biophys Res Commun 311, 1019-1025.
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    43 Miyoshi K, Honda A, Baba K, Taniguchi M, Oono K, Fujita T, et al (2003): Disrupted-In-Schizophrenia 1, a candidate gene for schizophrenia, participates in neurite outgrowth. Mol Psychiatry 8:685-694.
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    48 Morris, J. A., Kandpal, G., Ma, L., and Austin, C. P. (2003). DISC1 (Disrupted-In-Schizophrenia 1) is a centrosome-associated protein that interacts with MAP1A, MIPT3, ATF4/5 and NUDEL: regulation and loss of interaction with mutation. Hum Mol Genet 12, 1591-1608.
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    63 Sawa, A., Khan, A. A., Hester, L. D., and Snyder, S. H. (1997). Glyceraldehyde-3-phosphate dehydrogenase: nuclear translocation participates in neuronal and normeuronal cell death. Proc Natl Acad Sci USA 94, 11669-11674.
    64 Sawa, A., Wiegand, G. W., Cooper, J., Margolis, R. L., Sharp, A. H., Lawler, J. F., Jr., Greenamyre, J. T., Snyder, S. H., and Ross, C. A. (1999). Increased apoptosis of Huntington disease lymphoblasts associated with repeat length-dependent mitochondrial depolarization. Nat Med 5, 1194-1198.
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    68 Selemon, L. D., and Goldman-Rakic, P. S. (1999). The reduced neuropil hypothesis: a circuit based model of schizophrenia. Biol Psychiatry 45, 17-25.
    69 Smith, D. S., Niethammer, M., Ayala, R., Zhou, Y., Gambello, M. J., Wynshaw-Boris, A., and Tsai, L. H. (2000). Regulation of cytoplasmic dynein behaviour and microtubule organization by mammalian Lis1. Nat Cell Biol 2, 767-775.
    70 St Clair, D., Blackwood, D., Muir, W., Carothers, A., Walker, M., Spowart, G., Gosden, C. & Evans, H. J. (1990) Lancet 336, 13-16.
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    75 Tomoda, T., Kim, J. H., Zhan, C., and Hatten, M. E. (2004). Role of Unc51.1 and its binding partners in CNS axon outgrowth. Genes Dev 18, 541-558.
    76 Torrey, E. F. (1999). Epidemiological comparison of schizophrenia and bipolar disorder. Schizophr Res 39, 101-106.
    77 Torrey, E. F., Webster, M., Knable, M., Johnston, N. & Yolken, R. H. (2000) Schizophr Res 44, 151-155.
    78 Volkow, N. D. & Fowler, J. S. (2000) Cereb Cortex 10, 318-325.
    79 Waterman-Storer, C. M., Karki, S. B., Kuznetsov, S. A., Tabb, J. S., Weiss, D. G., Langford, G. M., and Holzbaur, E. L. (1997). The interaction between cytoplasmic dynein and dynactin is required for fast axonal transport. Proc Natl Acad Sci USA 94, 12180-12185.
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    82 Yu, J. Y., DeRuiter, S. L., and Turner, D. L. (2002). RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc Natl Acad Sci U S A 99, 6047-6052.
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    29 Knable, M. B. (1999) Schizophr Res 39, 149-152; discussion 163.
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    45 Nakajima, K., Mikoshiba, K., Miyata, T., Kudo, C., and Ogawa, M. (1997). Disruption of hippocampal development in vivo by CR-50 mAb against reelin. Proc Natl Acad Sci USA 94, 8196-8201.
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    51 Reiner, O., Carrozzo, R., Shen, Y., Wehnert, M., Faustinella, F., Dobyns, W. B., Caskey, C. T., and Ledbetter, D. H. (1993). Isolation of a Miller-Dieker lissencephaly gene containing G protein beta-subunit-like repeats. Nature 364, 717-721.
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    53 Ross, M. E., and Walsh, C. A. (2001). Human brain malformations and their lessons for neuronal migration. Annu Rev Neurosci 24, 1041-1070.
    54 Sasaki, S., Shionoya, A., Ishida, M., Gambello, M. J., Yingling, J., Wynshaw-Boris, A., and Hirotsune, S. (2000). A LIS1/NUDEL/cytoplasmic dynein heavy chain complex in the developing and adult nervous system. Neuron 28, 681-696.
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    57 Sawa, A., Khan, A. A., Hester, L. D., and Snyder, S. H. (1997). Glyceraldehyde-3-phosphate dehydrogenase: nuclear translocation participates in neuronal and normeuronal cell death. Proc Natl Acad Sci USA 94, 11669-11674.
    58 Sawa, A., Wiegand, G. W., Cooper, J., Margolis, R. L., Sharp, A. H., Lawler, J. F., Jr., Greenamyre, J. T., Snyder, S. H., and Ross, C. A. (1999). Increased apoptosis of Huntington disease lymphoblasts associated with repeat length-dependent mitochondrial depolarization. Nat Med 5, 1194-1198.
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    61 Schurov I L, Handford E J, Brandon N J, Whiting P J (2004): Expression of disrupted in schizophrenia 1 (DISC1) protein in the adult and developing mouse brain indicates its role in neurodevelopment. Mol Psychiatry.
    62 Selemon, L. D., and Goldman-Rakic, P. S. (1999). The reduced neuropil hypothesis: a circuit based model of schizophrenia. Biol Psychiatry 45, 17-25.
    63 Smith, D. S., Niethammer, M., Ayala, R., Zhou, Y., Gambello, M. J., Wynshaw-Boris, A., and Tsai, L. H. (2000). Regulation of cytoplasmic dynein behaviour and microtubule organization by mammalian Lis1. Nat Cell Biol 2, 767-775.
    64 St Clair, D., Blackwood, D., Muir, W., Carothers, A., Walker, M., Spowart, G., Gosden, C. & Evans, H. J. (1990) Lancet 336, 13-16.
    65 Sudoh, S., Kawamura, Y., Sato, S., Wang, R., Saido, T. C., Oyama, F., Sakaki, Y., Komano, H. & Yanagisawa, K. (1998) J Neurochem 71, 1535-1543.
    66 Tabata, H., and Nakajima, K. (2001). Efficient in utero gene transfer system to the developing mouse brain using electroporation: visualization of neuronal migration in the developing cortex. Neuroscience 103, 865-872.
    67 Taylor, M. S., Devon, R. S., Millar, J. K. & Porteous, D. J. (2003) Genomics 81, 67-77.
    68 Tkachev, D., Mimmack, M. L., Ryan, M. M., Wayland, M., Freeman, T., Jones, P. B., Starkey, M., Webster, M. J., Yolken, R. H. & Bahn, S. (2003) Lancet 362, 798-805.
    69 Tomoda, T., Kim, J. H., Zhan, C., and Hatten M. E. (2004). Role of Unc51.1 and its binding partners in CNS axon outgrowth. Genes Dev 18, 541-558.
    70 Torrey, E. F. (1999). Epidemiological comparison of schizophrenia and bipolar disorder. Schizophr Res 39, 101-106.
    71 Torrey, E. F., Webster, M., Knable, M., Johnston, N. & Yolken, R. H. (2000) Schizophr Res 44, 151-155.
    72 Volkow, N. D. & Fowler, J. S. (2000) Cereb Cortex 10, 318-325.
    73 Waterman-Storer, C. M., Karki, S. B., Kuznetsov, S. A., Tabb, J. S., Weiss, D. G., Langford, G. M., and Holzbaur, E. L. (1997). The interaction between cytoplasmic dynein and dynactin is required for fast axonal transport. Proc Natl Acad Sci USA 94, 12180-12185.
    74 Weinberger, D. R. (1987). Implications of normal brain development for the pathogenesis of schizophrenia. Arch Gen Psychiatry 44, 660-669.
    75 Xie, Z., Sanada, K., Samuels, B. A., Shih, H., and Tsai, L. H. (2003). Serine 732 phosphorylation of FAK by Cdk5 is important for microtubule organization, nuclear movement, and neuronal migration. Cell 114, 469-482.
    76 Yu, J. Y., DeRuiter, S. L., and Turner, D. L. (2002). RNA interference by expression of short-interfering RNAs and hairpin RNAs in mammalian cells. Proc Natl Acad Sci U S A 99, 6047-6052.

## Claims

1. A method for diagnosing or predicting susceptibility of an individual to schizophrenia, major depression or substance abuse, which comprises:
determining the subcellular distribution of Disrupted-in Schizophrenia-1 (DISC1) protein in cells from said individual and from an unaffected control individual, wherein said cells are selected from the group consisting of brain cells and lymphoblasts; and
wherein an increase in the ratio of nuclear to cytoplasmic amounts of DISC1protein in the cells from the individual being diagnosed, as compared to the cells from said unaffected control individual, indicates the presence of schizophrenia, major depression or substance abuse, or susceptibility thereto.

2. The method of Claim 1, wherein said DISC1 is detected with an antibody against DISC1 protein.

3. The method of Claim 1, wherein the cells are lymphoblasts.

4. A method for diagnosing or predicting susceptibility of an individual to bipolar disorder, which comprises determining the expression level of DISC 1 protein in lymphoblasts from said individual and from an unaffected control individual, and wherein a decrease in the expression level of DISC1in the lymphoblasts from the individual being diagnosed, as compared to lymphoblasts from said unaffected control individual, indicates the presence of bipolar disorder or susceptibility thereto.

5. The method of claim 4, wherein said DISC1is detected with an antibody against DISC1 protein.