NotImplementedError when taking activation functions from model

username: ahmed
cooked: <p>I am using the Faster R-CNN based on the tutorial <a href="https://pytorch.org/tutorials/intermediate/torchvision_tutorial.html" rel="nofollow noopener">https://pytorch.org/tutorials/intermediate/torchvision_tutorial.html</a>. I am trying to extract some of the activation functions from <code>'backbone'</code> layer. This is the full model:</p>
<pre><code class="lang-auto">FasterRCNN(
  (transform): GeneralizedRCNNTransform()
  (backbone): BackboneWithFPN(
    (body): IntermediateLayerGetter(
      (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)
      (bn1): FrozenBatchNorm2d()
      (relu): ReLU(inplace)
      (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)
      (layer1): Sequential(
        (0): Bottleneck(
          (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
          (downsample): Sequential(
            (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
            (1): FrozenBatchNorm2d()
          )
        )
        (1): Bottleneck(
          (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (2): Bottleneck(
          (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
      )
      (layer2): Sequential(
        (0): Bottleneck(
          (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
          (downsample): Sequential(
            (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)
            (1): FrozenBatchNorm2d()
          )
        )
        (1): Bottleneck(
          (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (2): Bottleneck(
          (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (3): Bottleneck(
          (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
      )
      (layer3): Sequential(
        (0): Bottleneck(
          (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
          (downsample): Sequential(
            (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)
            (1): FrozenBatchNorm2d()
          )
        )
        (1): Bottleneck(
          (conv1): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (2): Bottleneck(
          (conv1): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (3): Bottleneck(
          (conv1): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (4): Bottleneck(
          (conv1): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (5): Bottleneck(
          (conv1): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
      )
      (layer4): Sequential(
        (0): Bottleneck(
          (conv1): Conv2d(1024, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(512, 512, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(512, 2048, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
          (downsample): Sequential(
            (0): Conv2d(1024, 2048, kernel_size=(1, 1), stride=(2, 2), bias=False)
            (1): FrozenBatchNorm2d()
          )
        )
        (1): Bottleneck(
          (conv1): Conv2d(2048, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(512, 2048, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
        (2): Bottleneck(
          (conv1): Conv2d(2048, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn1): FrozenBatchNorm2d()
          (conv2): Conv2d(512, 512, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)
          (bn2): FrozenBatchNorm2d()
          (conv3): Conv2d(512, 2048, kernel_size=(1, 1), stride=(1, 1), bias=False)
          (bn3): FrozenBatchNorm2d()
          (relu): ReLU(inplace)
        )
      )
    )
    (fpn): FeaturePyramidNetwork(
      (inner_blocks): ModuleList(
        (0): Conv2d(256, 256, kernel_size=(1, 1), stride=(1, 1))
        (1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1))
        (2): Conv2d(1024, 256, kernel_size=(1, 1), stride=(1, 1))
        (3): Conv2d(2048, 256, kernel_size=(1, 1), stride=(1, 1))
      )
      (layer_blocks): ModuleList(
        (0): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
        (1): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
        (2): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
        (3): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
      )
      (extra_blocks): LastLevelMaxPool()
    )
  )
  (rpn): RegionProposalNetwork(
    (anchor_generator): AnchorGenerator()
    (head): RPNHead(
      (conv): Conv2d(256, 256, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1))
      (cls_logits): Conv2d(256, 3, kernel_size=(1, 1), stride=(1, 1))
      (bbox_pred): Conv2d(256, 12, kernel_size=(1, 1), stride=(1, 1))
    )
  )
  (roi_heads): RoIHeads(
    (box_roi_pool): MultiScaleRoIAlign()
    (box_head): TwoMLPHead(
      (fc6): Linear(in_features=12544, out_features=1024, bias=True)
      (fc7): Linear(in_features=1024, out_features=1024, bias=True)
    )
    (box_predictor): FastRCNNPredictor(
      (cls_score): Linear(in_features=1024, out_features=5, bias=True)
      (bbox_pred): Linear(in_features=1024, out_features=20, bias=True)
    )
  )
)

</code></pre>
<p>This is a model class I created for extracting the activation layers:</p>
<pre><code class="lang-auto">class BackboneFusionLayer(nn.ModuleDict):
    def __init__(self, model):
        super(BackboneFusionLayer, self).__init__()
        self.model = model
        self.modules = OrderedDict()
        for name, module in model.named_children():
            self.modules[name] = module
        self.body = list(self.modules['body'].children())
        self.fpn = list(self.modules['fpn'].children())
        self.features1 = nn.Sequential(*self.body)[:6]
        self.features2 = nn.Sequential(*self.body)[6:]
        self.featpynet = nn.Sequential(*self.body)

    def forward(self, x):
        x = self.features1(x)
        x = self.features2(x)
        x = self.featpynet(x)
        print(x.shape)
        return x
</code></pre>
<p>Eventually I want to use this to extract certain features and use them for fusion of two inputs. Just to test if I have created the class properly, I set <code>features1</code> to be the first half of <code>backbone.body</code> and features2 as the second half of <code>backbone.body</code>. <code>self.featpynet</code> is the <code>fpn</code> (i.e. the FeaturePyramidNetwork). But when I start the training,  I get the following error:</p>
<pre><code class="lang-auto">RuntimeError: Given groups=1, weight of size 64 3 7 7, expected input[4, 2048, 25, 25] to have 3 channels, but got 2048 channels instead
</code></pre>
<p>When I print the outputs for <code>features1</code> and <code>features2</code>, the outputs are:</p>
<pre><code class="lang-auto">torch.Size([4, 512, 100, 100])
torch.Size([4, 2048, 25, 25])
</code></pre>
<p>I understand that the issue is to due with the output of <code>features2</code>. Am I missing something? I can’t seem to find anything that I may have missed based on ‘backbone’. It seems to work fine when I use:</p>
<pre><code class="lang-auto">class BackboneFusionLayer(nn.ModuleDict):
    def __init__(self, model):
        super(BackboneFusionLayer, self).__init__()
        self.model = model
        self.modules = OrderedDict()
        for name, module in model.named_children():
            self.modules[name] = module
        self.body = list(self.modules['body'].children())
        self.fpn = list(self.modules['fpn'].children())
        self.features1 = nn.Sequential(*self.body)[:6]
        self.features2 = nn.Sequential(*self.body)[6:]
        self.featpynet = nn.Sequential(*self.body)

    def forward(self, x):
        x = self.model(x)
        return x
</code></pre>
<p>Sorry for the long post. Any advice would be greatly appreciated.</p>

username: ahmed
cooked: <p>I just noticed a typo in the <code>forward</code> in  <code>BackboneFusionLayer</code>, where I set <code>self.featpynet = nn.Sequential(*self.body)</code> but it should be <code>self.featpynet = nn.Sequential(*self.fpn)</code>.</p>
<p>Having changed that, I get the following error now: <code>NotImplementedError</code></p>

username: ptrblck
cooked: <p>Which line of code throws this error?<br>
The format of your code looks alright here, but make sure the indentation levels are right for <code>forward</code> and <code>__init__</code> in your script.</p>

username: ahmed
cooked: <p>Thank you for your reply, but I realised my mistake soon after posting. The input of the fpn is supposed to be an Ordereddrict(). I fixed that and now the model is working.</p>