Overview

The 111 th Congress continues to take a strong interest in the health of the U.S. research and development (R&D) enterprise and in providing sustained support for federal R&D activities. The United States government supports a broad range of scientific and engineering research and development. Its purposes include addressing specific concerns such as national defense, health, safety, the environment, and energy security; advancing knowledge generally; developing the scientific and engineering workforce; and strengthening U.S. innovation and competitiveness in the global economy. Most of the R&D funded by the federal government is performed in support of the unique missions of the funding agencies. The federal government has played an important role in supporting R&D efforts that have led to scientific breakthroughs and new technologies, from jet aircraft and the Internet to communications satellites and defenses against disease.
In May 2009, President Obama requested $147.620 billion for R&D in FY2010, a 0.4% increase over the enacted FY2009 R&D funding level of $147.065 billion (est.) (not including FY2009 R&D funding provided under the American Recovery and Reinvestment Act ( P.L. 111-5 )). According to the Obama Administration, preliminary allocations of R&D funding provided under P.L. 111-5 brings total FY2009 R&D funding to $165.400 billion.
The President's proposed FY2010 R&D funding included an emphasis on increasing funding for the physical sciences and engineering, an effort consistent with the intent of the America COMPETES Act ( P.L. 110-69 ) and President Bush's American Competitiveness Initiative (ACI). President Obama would have achieved this objective largely through increased funding for the Department of Energy Office of Science and the National Science Foundation, and, to a lesser extent, the Department of Commerce National Institute of Standards and Technology's core laboratory research.
More broadly, in a speech before members of the National Academy of Sciences, President Obama put forth a goal of increasing the national investment in R&D to more than 3% of the U.S. gross domestic product (GDP). President Obama did not provide details on how this goal might be achieved (e.g., how much would be funded through increases in direct federal R&D funding or through indirect mechanisms such as the research and experimentation tax credit ), however doing so likely would require a substantial increase in public and private investment. In 2007, total U.S. R&D expenditures were $368.1 billion, or approximately 2.7% of GDP. Based on 2007 figures, reaching President Obama's 3% goal would require a 12.5% real increase in national R&D funding. Increasing direct Federal R&D funding by 12.5% in FY2010 would have required an increase of more than $18 billion above President Obama's request.
In addition, advocates for increased federal R&D funding—including President Obama's science advisor, John Holdren—have raised concerns about the potential negative effects of a "boom-bust" approach to federal R&D funding, i.e., rapid growth in federal R&D funding followed by much slower growth, flat funding, or even decline. The biomedical research community experienced a variety of challenges resulting from such a circumstance following the five-year doubling of the NIH budget that was completed in FY2003. With the NIH doubling came a rapid expansion of the nation's biomedical research infrastructure (e.g., buildings, laboratories, equipment), as well as rapid growth in university faculty hiring, students pursuing biomedical degrees, and grant applications to NIH. After the doubling, however, the agency's budget fell each year in real terms from FY2004 to FY2009. Critics assert a variety of adverse effects of this boom-bust cycle, including interruptions and cancelations of promising research, declining share in the number of NIH grant proposals funded, decreased student interest in pursuing graduate studies, and reduced employment prospects for the large number of biomedical researchers with advanced degrees. According to then-NIH Director Elias Zerhouni, the adverse ramifications have been particularly acute for early- and mid-career scientists seeking a first or second grant. , 
Analysis of federal R&D funding is complicated by several factors, including the Obama Administration's omission of Congressionally directed spending from the FY2010 budget request and inconsistency among agencies in the reporting of R&D. Another complicating factor for FY2009 and FY2010 is the inclusion of funding for R&D, facilities, and equipment, and related activities in the American Recovery and Reinvestment Act of 2009 (ARRA, P.L. 111-5 ). ARRA funds supplement funding provided to agencies in P.L. 110-329 and P.L. 111-8 . Some ARRA funding will be spent in FY2009 and the balance of these funds will be spent in subsequent years. For purposes of this report, unless otherwise noted, comparisons of FY2009 and FY2010 R&D funding do not incorporate funding provided under P.L. 111-5 . As a result of these and other factors, the R&D agency figures reported by the White House Office of Management and Budget (OMB) and White House Office of Science and Technology Policy (OSTP) (and shown in Table 1 ) may differ somewhat from the agency budget analyses that appear later in this report.

	Federal R&D Funding Perspectives

Federal R&D funding can be analyzed from a variety of perspectives that provide unique insights.

		Agency Perspective

The authorization and appropriations process views federal R&D funding primarily from agency and program perspectives. Table 1 provides data on R&D by agency for FY2008 (actual), FY2009 (estimate), ARRA, and FY2010 (request) as reported by OMB. Under President Obama's FY2010 budget request, six federal agencies would have received 95.1% of total federal R&D funding: the Department of Defense (DOD), 54.0%; the Department of Health and Human Services (HHS) (primarily the National Institutes of Health (NIH)), 21.0%; the National Aeronautics and Space Administration (NASA), 7.7%; the Department of Energy (DOE), 7.3%; the National Science Foundation (NSF), 3.6%; and the Department of Agriculture (USDA), 1.5%. This report provides an analysis of the R&D budget requests for these agencies, as well as for the Departments of Commerce (DOC), Homeland Security, the Interior (DOI), and Transportation (DOT), and the Environmental Protection Agency (EPA). In total, these departments and agencies accounted for more than 98% of current and requested federal R&D funding.
In his FY2010 budget request, President Obama stated his intention to double the federal investment in three basic-research agencies over a decade from their FY2006 levels: DOE's Office of Science (up 3.9% above the estimated FY2009 level), NSF (up 9.4%), and DOC's National Institute of Standards and Technology (NIST) laboratories and construction funds (up 1.2%). This effort essentially continued the American Competitiveness Initiative (ACI) initiated by President Bush to double physical sciences and engineering research in these agencies over ten years (FY2007-FY2016). In 2007, Congress authorized substantial R&D increases for these agencies under the America COMPETES Act ( P.L. 110-69 ), setting a more aggressive seven-year doubling course. 
The largest agency R&D increases in the President's FY2010 request were for NASA, $1.038 billion; the Department of Health and Human Services, $521 million (due primarily to a $436 million increase in R&D funding for NIH); and the National Science Foundation, $455 million. DOD R&D funding would have been reduced by $1.929 billion in FY2010, and USDA R&D funding would be cut by $149 million.

		Character of Work, Facilities, and Equipment Perspective

Federal R&D funding can also be examined by the character of work (basic research, applied research, and development) it supports, and funding provided for facilities and acquisition of major R&D equipment (see Table 2 ). President Obama's FY2010 request included $30.884 billion for basic research, up $1.003 billion (3.4%) from FY2009; $28.139 billion for applied research, down $627 million (-2.2%); $84.054 billion for development, up $167 million (0.2%); and $4.543 billion for facilities and equipment, up $12 million (0.3%).

		Combined Perspective

Combining these perspectives, federal R&D funding can be viewed in terms of each agency's contribution to basic research, applied research, development, and facilities and equipment (see Table 3 ). The federal government is the nation's largest supporter of basic research (funding an estimated 59.0% of U.S. basic research in 2007), primarily because the private sector asserts it cannot capture an adequate return on long-term fundamental research investments. In contrast, industry funded only 15.9% of U.S. basic research in 2007. In FY2009, the Department of Health and Human Services (primarily HHS's National Institutes of Health (NIH)) accounts for more than half of all federal funding for basic research.
In contrast to basic research, industry is the primary funder of applied research in the United States, accounting for an estimated 61.1% in 2007, while the federal government accounted for an estimated 31.3%. Among federal agencies, HHS is the largest funder of applied research, accounting for nearly half of all federally funded applied research in FY2009.
Industry also provides the vast majority of funding for development, accounting for an estimated 83.2% in 2007, while the federal government provided an estimated 15.7%. DOD is the primary federal agency funder of development, accounting for 87.6% of total federal development funding in FY2009.

		Multi-Agency R&D Initiatives Perspective

Federal R&D funding can also be viewed in terms of multi-agency efforts, such as the National Nanotechnology Initiative (see " FY2010 Federal R&D Appropriations Status " section below), and presidential initiatives, such as the Bush Administration's American Competitiveness Initiative (ACI). 
President Obama stated that he would seek to double funding for basic research over ten years at the agencies comprising the ACI—NSF, DOE's Office of Science, and NIST. Congress established authorization levels for FY2008-FY2010 in the America COMPETES Act that would put funding for research at these agencies on track to double in approximately seven years. However, FY2008 research funding provided in the Consolidated Appropriations Act, 2008 ( P.L. 110-161 ) for these agencies fell below these doubling targets. Figure 1 illustrates how actual, estimated and requested appropriations (for FY2006 through FY2010) compare to seven- and ten-year doubling rates.
For FY2010, President Obama has proposed $12.638 billion in funding for NSF, DOE's Office of Science, and NIST's core research and facilities, an increase of $731 million (6.1%) above the FY2009 funding level of $11.907 billion. For FY2009, Congress appropriated an estimated $11.907 billion in funding for these agencies, an increase of $1.176 billion (11.0%) above the FY2008 level of $10.731 billion. The American Recovery and Reinvestment Act of 2009 ( P.L. 111-5 ) also provides funding for each of the three ACI agencies totaling approximately $5.182 billion (in addition to the enacted levels in P.L. 110-329 ) (see Table 4 ). Estimated FY2008 funding for ACI research totaled $10.731 billion, an increase of approximately $485 million (4.7%) over the FY2007 ACI funding level.

		FY2010 Federal R&D Appropriations Status

As of December 19, 2009, all twelve of the regular FY2010 appropriations bills have been enacted.

	Multiagency R&D Initiatives

President Obama's FY2010 budget request provided funding for three multiagency R&D initiatives. Funding for the National Nanotechnology Initiative (NNI) was requested in the amount of $1.637 billion for FY2010, $17 million (-1.0%) below the estimated FY2009 level of $1.654 billion. The overall decrease in the FY2010 NNI funding request was due to a $85 million decrease (-18.3%) in funding for DOD nanotechnology R&D compared to its estimated FY2009 funding level. This decrease was offset somewhat by increases in other agencies, including NSF (up $26 million, 6.5%); HHS, including the NIH and the Centers for Disease Control and Prevention (up $19 million, 6.1%); and DOE (up $15 million, 4.4%).
President Obama requested $3.927 billion in FY2010 funding for the Networking and Information Technology Research and Development (NITRD) program, $44 million (1.1%) above the estimated FY2009 level of $3.882 billion. The requested NITRD increase was due primarily to requested funding increases for NSF (up $107 million, 10.6%) and DOE (up $48 million, 10.9%), and offset, in part, by a proposed decrease in NITRD funding for DOD (down $140 million, -10.9%). 
The Obama Administration proposed $2.026 billion for the Climate Change Science Program (CCSP) in FY2010, $46 million (2.3%) above the estimated FY2009 level of $1.980 billion. , Two agencies would have received the bulk of the FY2010 CCSP funding increase: NSF (up $80 million, 36.4%) and DOI's U.S. Geological Survey (up $18 million, 40.0%). The increase in these and other agencies' CCSP proposed FY2010 funding was to be offset, in part, by reductions in proposed funding for DOC's National Oceanic and Atmospheric Administration (NOAA) (down $72 million, -19.5%) and NASA (down $15 million, -1.4%).

	Department of Defense24

Congress supports research and development in the Department of Defense (DOD) through its Research, Development, Test, and Evaluation (RDT&E) appropriation. The appropriation primarily supports the development of the nation's future military hardware and software and the technology base upon which those products rely.
Nearly all of what DOD spends on RDT&E is appropriated in Title IV of the defense appropriation bill (see Table 5 ). However, RDT&E funds are also appropriated in other parts of the bill. For example, RDT&E funds are appropriated as part of the Defense Health Program and the Chemical Agents and Munitions Destruction Program. The Defense Health Program supports the delivery of health care to DOD personnel and their families. Program funds are requested through the Operations and Maintenance appropriation. The program's RDT&E funds support Congressionally directed research in such areas as breast, prostate, and ovarian cancer and other medical conditions. The Chemical Agents and Munitions Destruction Program supports activities to destroy the U.S. inventory of lethal chemical agents and munitions to avoid future risks and costs associated with storage. Funds for this program have been requested through the Army Procurement appropriation. The Joint Improvised Explosive Device Defeat Fund (JIEDDF) also contains additional RDT&E monies. However, the fund does not contain an RDT&E line item as do the two programs mentioned above. The Joint Improvised Explosive Device Defeat Office, which now administers the fund, tracks (but does not report) the amount of funding allocated to RDT&E. The JIEDDF funding is not included in the tables below. Typically, Congress has funded each of these programs in Title VI (Other Department of Defense Programs) of the defense appropriations bill.
RDT&E funds also have been requested and appropriated as part of DOD's separate funding to support efforts in what the Bush Administration had termed the Global War on Terror (GWOT), and what the Obama Administration refers to as Overseas Contingency Operations (OCO). Typically, the RDT&E funds appropriated for GWOT/OCO activities go to specified Program Elements (PEs) in Title IV. However, they are requested and accounted for separately. The Bush Administration requested these funds in separate GWOT emergency supplemental requests. The Obama Administration, while continuing to identify these funds uniquely as OCO requests, has included these funds as part of the regular budget, not as an emergency supplemental. In addition, GWOT/OCO-related requests/appropriations often include money for a number of transfer funds. These include the Iraqi Freedom Fund (IFF), the Iraqi Security Forces Fund, the Afghanistan Security Forces Fund, the Mine Resistant and Ambush Protected Vehicle Fund (MRAPVF), and, beginning in FY2010, the Pakistan Counterinsurgency Capability Fund. Congress typically makes a single appropriation into each of these funds, and authorizes the Secretary to make transfers to other accounts, including RDT&E, at his discretion.
For FY2010, the Obama Administration requested $78.634 billion for DOD's baseline Title IV RDT&E, roughly $2 billion (2%) less than Congress appropriated for baseline Title IV in FY2009. The FY2010 requests for RDT&E in the Defense Health Program and the Chemical Agents and Munitions Destruction program were $613 million and $401 million, respectively. In addition, the Obama Administration requested $310 million in OCO-related RDT&E.
RDT&E funding can be broken out in a couple of ways. Each of the military departments request and receive their own RDT&E funding. So, too, do various DOD agencies (e.g., the Missile Defense Agency and the Defense Advanced Research Projects Agency), collectively aggregated within the Defensewide account. RDT&E funding also can be characterized by budget activity (i.e., the type of RDT&E supported). Those budget activities designated as 6.1, 6.2, and 6.3 (basic research, applied research, and advanced development, respectively) constitute what is called DOD's Science and Technology Program (S&T) and represent the more research-oriented part of the RDT&E program. Budget activities 6.4 and 6.5 focus on the development of specific weapon systems or components (e.g., the Joint Strike Fighter or missile defense systems), for which an operational need has been determined and an acquisition program established. Budget activity 6.7 supports system improvements in existing operational systems. Budget activity 6.6 provides management support, including support for test and evaluation facilities.
Congress is particularly interested in S&T funding since these funds support the development of new technologies and the underlying science. Ensuring adequate support for S&T activities is seen by some in the defense community as imperative to maintaining U.S. military superiority. This was of particular concern at a time when defense budgets and RDT&E funding were falling at the end of the Cold War. As part of its 2001 Quadrennial Review, DOD established a goal of stabilizing its baseline S&T funding (i.e., Title IV) at 3% of DOD's overall funding. Congress has embraced this goal.
The FY2010 baseline S&T funding request in Title IV was $11.650 billion, about $1.837 billion (13.6%) less than what Congress appropriated for baseline S&T in Title IV in FY2009 (not counting S&T's share of the $218 million general reduction in RDT&E for revised economic assumptions). Furthermore, the S&T request for baseline Title IV was approximately 2.2% of the overall baseline DOD budget request ($533.8 billion, not counting funds for the Global War on Terror), short of the 3% goal. 
Within the S&T program, basic research (6.1) receives special attention, particularly by the nation's universities. DOD is not a large supporter of basic research, when compared to the National Institutes of Health or the National Science Foundation. However, over half of DOD's basic research budget is spent at universities and represents the major contribution of funds in some areas of science and technology (such as electrical engineering and material science). The FY2010 request for basic research ($1.798 billion) was roughly $44 million (2%) less than what Congress appropriated for Title IV basic research in FY2008.
The House passed its version of the FY2010 defense appropriations bill ( H.R. 3326 ) on July 30. The House approved $80.2 billion for baseline Title IV RDT&E. This included $13.2 billion for S&T, of which $1.9 billion was for basic research. In addition, the House approved $1.3 billion for RDT&E in the Defense Health Program. This includes a technical revision approved on the House floor that shifted $26 million from the operations account to the RDT&E account. The House presumably approved the full $401 million request for RDT&E within the Chemical Agents and Munitions Destruction program. The committee report ( H.Rept. 111-230 ) had recommended a cut of $50 million in the program's RDT&E account. The House voted to add $50 million back into the program, although the amendment did not specify that it was added to the RDT&E account. The House approved $214 million in RDT&E for Overseas Contingency Operations, reducing the Navy's request substantially by declaring three of the line item requests as being either non-emergency-related or as being insufficiently justified. 
The Senate passed its version of the FY2010 defense appropriations bill on October 6. The Senate approved $78.450 billion for baseline Title IV RDTE. This included $12.319 billion for S&T, of which $1.785 billion was for basic research. In addition, the Senate approved $999 million for RDT&E in the Defense Health Program and $401 million for RDT&E in the Chemical Agents and Munitions Destruction program. The Senate also reduced the OCO RDT&E request, providing $294 million, reducing the Navy and Defensewide requests, while increasing the Air Force request (part of which was due to a transfer request by the Air Force). 
Major differences between the House and Senate version, in terms of dollars, included how to reallocate funds within the Army's Future Combat System program (restructured earlier this year by DOD), the Army's Aerial Common Sensor program (which the House fully supported and the Senate eliminated), the Navy's Executive Helicopter Development program (for which the House provided $400 million more than the budget request and the Senate reduced to $55 million), the Air Force's Next Generation Tanker Development program (where the House chose to provide $440 million to the Tanker Replacement Transfer Fund while the Senate provided $410 million as requested in the Air Force's Title IV account), and the Joint Strike Fighter programs of the Navy and Air Force (from which the Senate cut $293 million each). In regard to the OCO budget, the House fully funded the Navy's Manned Surveillance Systems OCO request, while the Senate zeroed the request citing insufficient justification.
The final enacted FY2010 DOD appropriation bill ( P.L. 111-118 ) provided $80.2 billion for Title IV RDT&E (including the $336 million general reduction in Section 8097). Of this, roughly $14 billion went toward S&T funding, representing roughly 2.2% of the approximately $600 billion baseline DOD appropriation. The bill also provided $1.3 billion for RDT&E in the Defense Health Program and $401 million for RDT&E in the Chemical Agent and Munitions Destruction Program. The bill provided $268 million for OCO-related RDT&E. The conferees basically split the differences between the House and Senate on the Army's Future Combat System funding and Aerial Common Sensor program. The bill provided $130 million for the Executive Helicopter Development program. Funding for the next generation tanker aircraft was split, with $15 million being provided as Title IV RDT&E funds in the Air Force account, and $292 million going to the Tanker Replacement Transfer Fund, from which the Secretary may transfer funds into RDT&E, Procurement, or Operations and Maintenance as necessary, with proper notification of Congress. The conferees agreed with the House on its recommendations for Joint Strike Fighter. The conferees agreed with the Senate where it disagreed with the House on OCO RDT&E funding. In addition, the conferees added $9 million in 6.3 funding in the OCO budget for a Marine Immersive Training program (transferring it from the Navy's Operations and Maintenance account). 
Although the Obama Administration included its FY2010 request for Overseas Contingency Operations as part of the baseline DOD FY2010 budget, it made an FY2009 supplemental OCO request as well. The House passed its version of the bill ( H.R. 2346 ) on May 14, 2009. The Senate passed its version, S. 1054 , on May 21 ( S.Rept. 111-20 ).The conference committee reported its version on June 12, 2009. The Administration requested $810 million in Title IV RDT&E funds, the House provided $722 million, the Senate recommended $886 million, and the conference committee recommended $833 million. The funds would be used to accelerate the development, testing, and demonstration of technologies and equipment needed in Iraq and Afghanistan. In addition, the Administration requested $34 million in RDT&E funding within the Defense Health Program for research in information technologies in support of the Wounded, Ill, and Injured program. The House provided $201 million, $168 million of which is directed toward additional research in traumatic brain injuries, psychological health, and orthopedics. The Senate recommended the requested level of $34 million. The conference committee recommended $160 million. As the total figures indicate, there are some substantial differences between the House and Senate versions. For example, the House sought to zero the Manned Reconnaissance Systems request of the Navy, the Senate sought to increase the request by $26 million. The Senate also added $61 million to the Air Force request for LINK 16 Support and Sustainment, which was not in the original request or the House version. Finally, the House voted to substantially increase RDT&E funding in the Defense Health Program, while the Senate did not recommend any additional funds beyond the request. 
The conference committee appears to have split the differences between the House and Senate versions, nominally taking House recommendations in the Navy and Defensewide accounts and the Senate recommendations in the Army and Air Force Accounts. The conference also nominally split the difference in its recommendation for RDT&E in the Defense Health Program. The House passed the conference bill on June 16; the Senate passed it on June 18. President Obama signed the act ( P.L. 111-32 ) on June 24, 2009.
On February 13, 2009, Congress also passed the American Recovery and Reinvestment Act of 2009. The final version of the bill, P.L. 111-5 , appropriated $300 million for DOD Title IV RDT&E. These funds remain available for obligation through September 20, 2010. According to the May 15, 2009 update of Recovery.gov, DOD intended to begin awarding contracts in May and complete the awards by February 2010.

	Department of Homeland Security25

The Department of Homeland Security (DHS) requested $1.354 billion for R&D and related programs in FY2010, an 8% decrease from FY2009. The total included $968 million for the Directorate of Science and Technology (S&T), $366 million for the Domestic Nuclear Detection Office (DNDO), and $20 million for Research, Development, Test, and Evaluation (RDT&E) in the U.S. Coast Guard. The House bill (H.R. 2892 as passed by the House) would have provided an increase of $50 million for DNDO, for a total of $1.403 billion. The Senate bill (H.R. 2892 as passed by the Senate) would have provided an increase of $19 million for S&T, the requested amount for DNDO, and an increase of $10 million for Coast Guard RDT&E, for a total of $1.384 billion. The final bill ( P.L. 111-83 ) provided a total of $1.401 billion: $999 million for the S&T Directorate, $375 million for DNDO, and $25 million for Coast Guard RDT&E. For details, see Table 7 .
The S&T Directorate is the primary DHS R&D organization. Headed by the Under Secretary for Science and Technology, it performs R&D in several laboratories of its own and funds R&D performed by the national laboratories, industry, and universities. The Administration requested a total of $968 million for the S&T Directorate for FY2010. This was 4% more than the FY2009 appropriation of $933 million. The request for the Command, Control, and Interoperability Division included a proposed increase of $15 million for next-generation cyber security R&D, largely offset by reductions in the division's other activities. A proposed increase of $25 million for the Explosives Division included $10 million to develop technologies for high-throughput screening of air cargo and $15 million to develop technologies for detection of improvised explosive devices in mass transit and at large events. A proposed reduction of $31 million for the Infrastructure and Geophysical Division included the elimination of funding for local and regional initiatives previously established or funded at congressional direction. The request for Laboratory Facilities included $36 million for the planned National Bio and Agro Defense Facility (NBAF), about the same as in FY2009. A proposed increase of $16 million for the Transition program included $5 million for the Homeland Security Studies and Analysis Institute, formerly the Homeland Security Institute, which was funded as a separate item in FY2009.
The House bill would have provided $15 million to the S&T Directorate to fund developmental testing of the BioWatch Generation 3 biological agent detection system. The Administration requested these funds for the Office of Health Affairs, which the House bill would have left in control of the BioWatch program other than Generation 3 development. The House bill would also have provided $10 million in the Infrastructure and Geophysical Division for local and regional initiatives. It would have eliminated the requested funding for NBAF construction and prohibited the obligation of any funds for that purpose until the Secretary of Homeland Security receives a non-DHS assessment of the risks of conducting R&D on foot-and-mouth disease on the U.S. mainland.
The Senate bill would have provided $23 million more than the request in the Infrastructure and Geophysical Division for local and regional initiatives. It would have provided the full requested funding for NBAF construction but prohibited the obligation of funds for that purpose until 90 days after DHS completes a site-specific safety and security assessment and reports to the appropriations committees on its foot-and-mouth disease research permit procedure and emergency response plan. The Senate bill would also have rescinded $7.5 million appropriated in prior years but not yet obligated. Report language directed S&T to provide quarterly briefings to the Senate Appropriations Committee on the test and evaluation status of all level 1 DHS acquisition programs (i.e., programs with total lifecycle costs of $1 billion or more).
The final bill provided a total of $1,006 million for the S&T Directorate, an increase of $38 million above the request. It provided $30 million more than the request for Infrastructure and Geophysical in order to fund local and regional initiatives. It provided $32 million for NBAF construction and included requirements for safety and security assessment and reporting that were similar to those of the Senate bill with an additional provision for the National Academy of Sciences to evaluate the assessment. It rescinded $6.9 million in unobligated appropriations from prior years. The conferees expressed their expectation that S&T will be "intricately involved" in the testing and evaluation of BioWatch Generation 3, but the bill did not remove Generation 3 activities from the Office of Health Affairs. The conference report directed the S&T Directorate to brief the appropriations committees jointly with Customs and Border Protection before beginning operational field testing of SBInet and to brief the appropriations committees each quarter on the test and evaluation status of all level 1 acquisitions.
Among the issues facing Congress are the S&T Directorate's priorities and how they are set; its relationships with other federal R&D organizations both inside and outside DHS; its budgeting and financial management; the allocation of its R&D resources to national laboratories, industry, and universities; and plans over the next few years to establish new university centers of excellence and terminate or merge several existing ones.
The start of NBAF construction in FY2011 will likely require significant increases in Laboratory Facilities funding over the next several years. It may also result in increased congressional oversight. For construction of NBAF and decommissioning of the Plum Island Animal Disease Center (PIADC), which NBAF will replace, DHS expects to need appropriations of $687 million between FY2011 and FY2014. The estimated total cost of the NBAF project, excluding PIADC decommissioning and site-specific infrastructure and utility upgrades, increased from $451 million in December 2006 to $615 million in May 2009. Decommissioning PIADC is expected to cost $190 million. In the Department of Homeland Security Appropriations Act, 2009 ( P.L. 110-329 , Div. D, Sec. 540) Congress authorized DHS to offset NBAF construction and PIADC decommissioning costs by selling Plum Island. Site-specific costs of $110 million will be contributed in-kind by Kansas State University and its partners.
Congress has been interested for several years in the role the S&T Directorate plays in testing and evaluation of large acquisition projects. The Homeland Security Act of 2002 authorizes the Secretary of Homeland Security, acting through the Under Secretary for Science and Technology, to "issue necessary regulations with respect to ... testing and evaluation activities of the Department" (P.L. 107-296, Sec. 306). Current DHS policy is that the Director of the Test and Evaluation and Standards Division (TSD) in the S&T Directorate is to establish the department's testing and evaluation policies and processes, and the Director of Operational Test and Evaluation (OT&E) is to administer those policies and processes. The Director of OT&E is also to report independently to the department-level Acquisition Review Board on the status and progress of testing and evaluation for any acquisitions the board reviews. At present, the same person serves as the Director of the TSD and the Director of OT&E. This dual role may blur the distinction between the policy-setting function and the policy-administration function. Congress may also wish to consider whether the ability of the Director of OT&E to report independently on programs in other divisions and directorates is affected by the fact that TSD conducts programs of its own. The FY2010 appropriations bills and the associated committee and conference reports emphasized the involvement of the S&T Directorate in the testing and evaluation of BioWatch Generation 3, SBInet, and other large acquisition programs. In particular, report language directed the S&T Directorate, not the Director of OT&E, to provide briefings and status reports to the appropriations committees.
Statutory authority for the Homeland Security Institute (HSI) expired in April 2009. Under its general authority to establish federally funded R&D centers, the S&T Directorate has replaced HSI with the Homeland Security Studies and Analysis Institute. It has also established a new Homeland Security Systems Engineering and Development Institute. Both institutes will be funded mostly on a cost-reimbursement basis by other S&T programs and other DHS and non-DHS agencies. The FY2010 DHS congressional budget justification estimated that reimbursable obligations by the two institutes would total $122 million in FY2009 and $143 million in FY2010.
The Domestic Nuclear Detection Office (DNDO) is the primary DHS organization for combating the threat of nuclear attack. It is responsible for all DHS nuclear detection research, development, testing, evaluation, acquisition, and operational support. The Administration requested a total of $366 million for DNDO for FY2010. This was a 29% reduction from the FY2009 appropriation of $514 million. The requested funding for Management and Administration and Research, Development, and Operations was approximately the same as in FY2009. No funds were requested for Systems Acquisition, which received $153 million in FY2009. According to the DHS congressional budget justification, new funds for Systems Acquisition are not needed in FY2010 because unobligated funds are available from previous fiscal years and because secretarial certification of Advanced Spectroscopic Portal (ASP) technology has been delayed. A floor amendment to the House bill added $50 million to the Research, Development, and Operations account for activities previously funded by Systems Acquisition, including $40 million for Securing the Cities. The House bill would otherwise have funded DNDO at the requested levels. The Senate bill would have provided $10 million in Systems Acquisition for Securing the Cities and $2 million less than the request for Management and Administration. It would have rescinded $8 million appropriated in prior years but not yet obligated. Otherwise, it would have provided the requested amounts for DNDO. The final bill provided a total of $383 million for DNDO, an increase of $17 million above the request. It provided $20 million for Securing the Cities in the Systems Acquisition account. It rescinded $8 million that was appropriated in prior years but not obligated.
Congressional attention has focused on the testing and analysis DNDO conducted to support its decision to purchase and deploy ASPs, a type of next-generation radiation portal monitor. A requirement for secretarial certification before full-scale ASP procurement has been included in each appropriations act since FY2007 (including P.L. 111-83 ). The expected date for certification has been postponed several times. For more information, see CRS Report RL34750, The Advanced Spectroscopic Portal Program: Background and Issues for Congress , by [author name scrubbed], [author name scrubbed], and [author name scrubbed].
The global nuclear detection architecture overseen by DNDO and the relative roles of DNDO and the S&T Directorate in research, development, testing, and evaluation also remain issues of congressional interest. For more information on the global nuclear detection architecture, see CRS Report RL34574, The Global Nuclear Detection Architecture: Issues for Congress , by [author name scrubbed].
The mission of DNDO, as established by Congress in the SAFE Port Act ( P.L. 109-347 ), includes serving as the primary federal entity "to further develop, acquire, and support the deployment of an enhanced domestic system" for detection of nuclear and radiological devices and material (6 U.S.C. 592). Congress may wish to consider whether the acquisition portion of that mission is consistent with the elimination of most new funding for Systems Acquisition and the following statement in the President's Budget Appendix (pp. 560-561):
In the past, DNDO acquired and deployed radiation detection technologies for DHS components, primarily the Coast Guard and the Customs and Border Patrol, or state and local users. Funding requests for radiation detection equipment will now be sought by the end users that will operate them.

	National Institutes of Health30

President Obama's FY2010 budget request included an NIH program level total of $30.696 billion, a $443 million increase (1.5%) over the FY2009 level of $30.253 billion enacted in regular appropriations. Congress provided a total of $30.946 billion for FY2010, a $693 million increase (2.3%) over the FY2009 level (see Table 8 ). In addition to the FY2009 regular appropriations, which were provided in Division F of the Omnibus Appropriations Act, 2009 ( P.L. 111-8 ), NIH received emergency supplemental appropriations in Division A of the American Recovery and Reinvestment Act of 2009 (ARRA), also called the economic stimulus package or Recovery Act ( P.L. 111-5 ). The Recovery Act provided a total of $10.400 billion to NIH, roughly half of which was slated to be obligated in FY2009 and the remainder in FY2010.
NIH's funding comes primarily from the annual appropriations bill for the Departments of Labor, Health and Human Services, and Education, and Related Agencies (Labor/HHS), with an additional amount for Superfund-related activities from the appropriations bill for the Department of the Interior, Environment, and Related Agencies (Interior/Environment). Those two bills provide NIH's discretionary budget authority. In addition, NIH receives mandatory funding of $150 million annually that is provided in the Public Health Service (PHS) Act for a special program on diabetes research, and also receives $8.2 million annually for the National Library of Medicine from a transfer within PHS. Each year since FY2002, Congress has provided that a portion of NIH's Labor/HHS appropriation be transferred to the Global Fund to Fight HIV/AIDS, Tuberculosis, and Malaria. The transfer, currently $300 million, is part of the U.S. contribution to the Global Fund. The total funding available for NIH activities, taking account of add-ons and transfers, is called the program level. Because the "NIH program level" cited in the Administration's FY2010 budget documents does not reflect the Global Fund transfer, Table 8 shows the program level both before and after the transfer. Discussions in this section refer to the program level after the transfer.
In congressional action on FY2010 appropriations bills, the House passed its Labor/HHS bill on July 24, 2009 (H.R. 3293, H.Rept. 111-220), and its Interior/Environment bill on June 26 (H.R. 2996, H.Rept. 111-180). The House bills would have provided NIH with a program level total of $31.196 billion, $943 million (3.1%) more than the FY2009 level and $500 million over the request. The Senate Appropriations Committee reported its version of H.R. 3293 (Labor/HHS) on August 4, 2009 (S.Rept. 111-66), but the bill was never considered by the full Senate. The Senate passed its version of H.R. 2996 (Interior/Environment) on September 24, 2009 (S.Rept. 111-38). The Senate bills would have provided a program level total of $30.696 billion, the same amount as requested, but the distribution among NIH institutes varied somewhat from the request. From October 1, 2009, until Congress completed action on its FY2010 appropriations, NIH operated at FY2009 rates with temporary funding provided by continuing appropriations resolutions. The Interior/Environment appropriation was enacted as P.L. 111-88 on October 30, 2009 ( H.Rept. 111-316 ). The Labor/HHS appropriation was enacted on December 16, 2009, as Division D of P.L. 111-117 , the Consolidated Appropriations Act, 2010 ( H.R. 3288 , H.Rept. 111-366 ).
Seven years ago, in FY2003, NIH reached the peak of its purchasing power from regular appropriations when Congress completed a five-year doubling of the NIH budget. In each year since then, NIH's buying power has declined because its annual appropriations have grown at a lower rate than the inflation rate for medical research. Congress provided NIH with annual increases in the range of 14%-15% each year from FY1999 through FY2003. From FY2004 to FY2009, increases dropped to between 1.0% and 3.2% each year (except that the FY2006 total was a 0.3% decrease), at a time when, according to NIH, the biomedical research inflation rate ranged between 3.7% and 4.6% per year. The projected changes in the Biomedical Research and Development Price Index (BRDPI) are 3.8% for FY2009 and 3.3% for FY2010. Even though in current dollars, the FY2010 NIH total is 14.3% higher than it was in FY2003, in inflation-adjusted terms (converting all amounts to constant 2009 dollars), the FY2010 funding level represents an estimated 12.7% decrease in purchasing power from the FY2003 peak.
The agency's organization consists of the Office of the NIH Director and 27 institutes and centers. The Office of the Director (OD) sets overall policy for NIH and coordinates the programs and activities of all NIH components, particularly in areas of research that involve multiple institutes. The institutes and centers (collectively called ICs) focus on particular diseases, areas of human health and development, or aspects of research support. Each IC plans and manages its own research programs in coordination with the Office of the Director. As shown in Table 8 , Congress provides a separate appropriation to 24 of the 27 ICs, to OD, and to a Buildings and Facilities account. (The other three centers, not included in the table, are funded through the NIH Management Fund.)
The FY2010 request proposed increases of 1.1% to 1.7% for most of the ICs. Traditionally, budget requests and enacted appropriations have treated the various institutes and centers approximately equally in percentage terms, maintaining their relative sizes over the years. That pattern is, however, subject to alteration because of special initiatives or new developments in scientific or public health needs. Some past examples have included the substantial ramping up of funds for ICs doing research on cancer, HIV/AIDS, bioterrorism, and genome sciences.
In the FY2010 request, the Administration proposed initiatives in cancer research and in research on autism spectrum disorders. Support of cancer research across NIH would have increased by $268 million (4.7%) to just over $6 billion, representing the first year of a proposed eight-year plan to double funding for cancer research by FY2017. The budget of the National Cancer Institute would have increased by 3.6%. The Administration also proposed an eight-year HHS initiative to invest an additional $1 billion in autism-related activities. The FY2010 request for NIH proposed a 15.6% increase in NIH's estimated spending on autism. Another area receiving a substantial boost in the request, at 4.8% across NIH, was nanotechnology-related research. In particular, the small program in the National Institute of Environmental Health Sciences (NIEHS) on the human health impact of nanotechnology was proposed for a $9 million (60.7%) increase to $24 million, contributing to a 3.2% increase in the proposed total for NIEHS.
The House and Senate Appropriations Committees rejected the proposals to set specific funding levels for particular diseases. They expressed concern over establishing a precedent of congressional funding decisions made outside of the peer review system, noting that the proposed increases for cancer and autism would have absorbed nearly two-thirds of the overall increase proposed for NIH. The House Labor/HHS bill recommended an overall increase of 3.1% for NIH, with most of the ICs receiving a 3.6% increase, in line with the biomedical research inflation rate. The Senate committee recommended the same overall increase of 1.5% as the request, but provided most of the ICs with 1.7% increases. The two committees agreed on giving proportionally larger increases to NIEHS and to the National Center for Research Resources (NCRR). The final Labor/HHS appropriation provided an overall increase of 2.3% for NIH, with most of the ICs receiving increases of 2.7%. Funding for NIEHS was increased by 4.1%, and for NCRR by 3.5%.
The two accounts in which final FY2010 funding decreased compared to FY2009 were the Office of the Director and the Buildings and Facilities account. The appropriation for the Office of the Director covers a variety of cross-cutting programs in addition to funding for OD's own leadership and management operations. Aggregate funding for OD was $1,247 million in FY2009. It dropped by $64 million (-5.1%) to $1,183 million in the FY2010 request, and by $70 million (-5.6%) to $1,177 million in the conference agreement, but only because the NIH Director's Bridge Award program was not funded. In FY2009, the program received $91 million to provide short-term awards to investigators whose renewal applications had just missed the funding cutoff; in FY2010, Recovery Act funds are available for similar purposes. The other programs managed or coordinated by OD were all proposed for sustained or increased funding. The House and Senate committees agreed with the OD request for the most part, except that the House amount, and the conference agreement, provided less for the Common Fund (see below). The conferees commented in general, "Unless otherwise noted in this statement, the conferees expect NIH to follow the budget policy assumptions of the President's fiscal year 2010 budget and the accompanying explanatory materials." ( H.Rept. 111-366 , p. 1029)
The President requested funding of up to $194 million for continuation of the National Children's Study (NCS), to which the House and the conferees agreed. Both committees noted that the cost projections for the NCS have increased substantially, and that NIH is extending its pilot phase, leading the Senate committee to defer specifying an amount for the study. The request included $97 million for research on medical countermeasures against nuclear, radiological, and chemical threats (the House committee noted its agreement); $5 million for a new program in bioethics research and training (the House and the conference agreement funded the initiative through the ICs rather than in OD); $5 million to expand ongoing trans-NIH stewardship and oversight activities; and a total of $181 million (up 2.6%) for several program coordination offices that work with the ICs.
Also funded through the OD account is the NIH Common Fund, which supports NIH Roadmap initiatives and other trans-institute research. The NIH Roadmap for Medical Research is a set of trans-NIH research activities designed to support high-risk/high-impact research in emerging areas of science or public health priorities. For FY2010, the President requested $549 million for the Roadmap/Common Fund, up $8 million (1.5%) from FY2009. The Senate committee bill agreed with that amount, the House bill provided a lower amount of $534 million, and the conferees provided $544 million, up $3 million (0.5%) from FY2009. Some Roadmap programs that have been supported for five years are ready to transition to the ICs for continued support. The Common Fund is also supporting a number of initiatives with Recovery Act money (see further discussion below).
The NIH Buildings and Facilities (B&F) program supports both the design and construction of new facilities for NIH's intramural research programs, and the repair and improvement of existing clinical, laboratory, and other facilities. The request and the Senate committee recommendation would have kept the B&F appropriation at $126 million, while the House bill and the conference agreement provided $100 million, a 20.4% decrease from FY2009. There will be additional spending for repairs and construction with the $500 million that NIH received for the purpose in the Recovery Act.
Of the funds appropriated to NIH each year, about 84% go out to the extramural research community in the form of grants, contracts, and other awards. The funding supports research performed by more than 300,000 scientists and technical personnel who work at more than 3,100 universities, hospitals, medical schools, and other research institutions around the country and abroad. The primary funding mechanism for support of the full range of investigator-initiated research is competitive, peer-reviewed research project grants (RPGs). In the FY2010 request, total funding for RPGs, at $16.4 billion, represented about 53% of NIH's budget. The request proposed to support an estimated 38,042 awards, 171 more than were projected to be supported with regular FY2009 appropriations. Within that total, 9,849 awards were to be competing RPGs, 7 more than in FY2009. ("Competing" awards means new grants plus competing renewals of existing grants.) The House committee said that its funding level would provide support for 38,888 total grants, an increase of 1,105 over FY2009, including 10,739 new and competing grants, an increase of 914. The request and the House bill would each have provided inflation-adjustment increases of 2% for noncompeting continuation awards, as well as a 2.0% increase in the average cost of competing RPGs. Under the request, the "success rate" of applications receiving funding was expected to be about 21%, the same as the estimated rate for FY2009. Estimated success rates for the various ICs were expected to range from 12% to 50%, although most would have ranged from 15% to 27%. Neither the Senate committee nor the conferees commented on numbers of awards or success rates.
Several NIH efforts are focused on supporting new investigators to encourage young scientists to undertake careers in research and to help them speed their transition from training to independent research. The Pathway to Independence program provides, through all the ICs, mentored grants that convert to independent RPGs; the House committee specified $102 million for the program. The NIH Director's New Innovator Award program provides first-time independent awards to especially creative investigators; the Administration planned to spend $80 million to support about 35 New Innovator Awards through the Common Fund in FY2010. In FY2009, NIH began giving special consideration during peer review to applications for research support made by Early Stage Investigators (new investigators who are within 10 years of having completed their terminal research degree or residency). For the National Research Service Awards, NIH's regular training mechanism, the request proposed an increase of $8 million (1.0%) to $798 million. The funding would have supported 17,742 Full-Time Training Positions, an increase of 101. Although NIH did not request any increases in stipends or other training-related expenses for pre- or post-doctoral fellows, the House bill provided funding for a 2% average increase in research training stipends. The Senate committee did not identify a specific training stipend increase. The conference agreement included funding for a 1% increase.
Changes proposed in the request for other funding mechanisms within the NIH budget included increased support for research centers, up $40 million (1.3%) to $3.056 billion. That included support of the Clinical and Translational Science Awards (CTSAs), funded at an estimated $467 million, including $25 million from the Common Fund. Support for grants in the Other Research category was proposed to increase by $25 million (1.4%) to a total of $1.844 billion. R&D contracts would have increased by $33 million (1.0%) to $3.412 billion, including $300 million for the Global HIV/AIDS Fund. A trans-NIH program launched in FY2009, the Therapeutic Rare and Neglected Diseases Initiative (TRNDI), was to continue at $24 million. The NIH intramural research program, representing about 10% of the NIH budget, was proposed to increase by $48 million (1.5%) to a total of $3.219 billion. The request included a proposed increase of $25 million (1.8%) to a total of $1.430 billion for research management and support. As has been the case for the past five years, no new funding was requested or provided for extramural research facilities construction and renovation. The Recovery Act provided $1.0 billion for this purpose, from which awards will continue to be made in FY2010. Funding for the intramural buildings and facilities account has already been discussed.
NIH and three of the other Public Health Service agencies within HHS are subject to a budget tap called the PHS Program Evaluation Set-Aside. Section 241 of the PHS Act (42 U.S.C. § 238j) authorizes the Secretary to use a portion of eligible appropriations to assess the effectiveness of federal health programs and to identify ways to improve them. The set-aside has the effect of redistributing appropriated funds for specific purposes among PHS and other HHS agencies. Section 205 of the FY2010 Labor/HHS appropriations act capped the set-aside at 2.5%, instead of the 2.4% maximum that had been in place for several years. NIH, with the largest budget among the PHS agencies, becomes the largest "donor" of program evaluation funds, and is a relatively minor recipient. By convention, budget tables such as Table 8 do not subtract the amount of the evaluation tap, or of other taps within HHS, from the agencies' appropriations.
As mentioned earlier, in addition to the FY2009 regular appropriations, NIH received a total of $10.400 billion in emergency FY2009 supplemental appropriations in the economic stimulus legislation, the American Recovery and Reinvestment Act of 2009 ( P.L. 111-5 ). The funds were made available for obligation for two years. NIH's current implementation plans indicate that more than $5 billion will remain to be obligated in FY2010. The funding given to NIH included $8.2 billion for extramural research; $1.3 billion for non-federal research facility construction, renovation, and equipment; $500 million for NIH buildings and facilities; and $400 million for comparative effectiveness research.
Activities supported with NIH's ARRA funding are being tracked on the NIH Recovery website. On a webpage about current grant funding opportunities, NIH says: "While NIH Institutes and Centers have broad flexibility to invest in many types of grant programs, they will follow the spirit of the ARRA by funding projects that will stimulate the economy, create or retain jobs, and have the potential for making scientific progress in 2 years." The agency's implementation plans for the various funding categories are available on the HHS Recovery Plans website. NIH is focusing activities on (1) funding new and recently peer reviewed, highly meritorious research grant applications that can be accomplished in two years or less; (2) giving targeted supplemental awards to current grants to push research forward; and (3) supporting a new initiative called the NIH Challenge Grants in Health and Science Research (at least $200 million to fund 200 or more grants with budgets under $500,000 per year) for research on specific topics that would benefit from significant two-year jumpstart funds. NIH received about 20,000 applications in response to the Challenge Grant announcement. Another new program called Research and Research Infrastructure "Grand Opportunities" (GO) grants supports large-scale research projects (budgets over $500,000 per year) working in areas of specific knowledge gaps, creating new technologies, or developing new approaches to multi- and interdisciplinary research teams. On September 30, 2009, President Obama announced that NIH had awarded $5 billion in ARRA funding, supporting over 12,000 grants to research institutions in every state. A White House press release highlighted examples of research in cancer, heart disease, and autism, particularly over $1 billion in research applying the technology produced by the Human Genome Project.

	Department of Energy38

The Administration requested $11.464 billion for Department of Energy (DOE) R&D and related programs in FY2010, including activities in three major categories: science, national security, and energy. This request was 3% above the FY2009 regular appropriation of $11.131 billion. (In addition, DOE received $10.900 billion for R&D and related programs in the Recovery Act.) The House provided a total of $11.355 billion. The Senate provided a total of $11.379 billion. The final bill provided a total of $11.143 billion. See Table 9 for details.
The request for the DOE Office of Science was $4.942 billion, an increase of 3.9% from the FY2009 regular appropriation of $4.758 billion. (The Office of Science also received $1.600 billion in the Recovery Act.) The Administration intends to double the combined R&D funding of the Office of Science and two other agencies over the decade from FY2006 to FY2016. This policy continues a goal established by the Bush Administration as part of its American Competitiveness Initiative. The 3.9% increase requested for FY2010 was less than the annual growth rate required to achieve a doubling in ten years, but that comparison is complicated by the planned expenditure of Recovery Act funds in both FY2009 and FY2010. The America COMPETES Act ( P.L. 110-69 ) authorized $5.814 billion for the Office of Science in FY2010. The House provided $4.944 billion. The Senate provided $4.899 billion. The final appropriation was $4.904 billion.
Within the Office of Science, the request for basic energy sciences included $68 million for the establishment of two energy innovation hubs, one focused on materials for energy storage, and the other on direct production of fuels from solar energy. The House funded one hub. The Senate funded both. The final bill funded neither. A proposed 10.8% increase for advanced scientific computing research was to support additional design research on computer architectures for science and infrastructure improvements for the Leadership Computing Facility at Argonne National Laboratory. The House provided the requested amount for advanced scientific computing; the Senate provided $10 million less; the final bill provided $15 million less. In fusion energy sciences, an increase of $11 million was requested for the U.S. share of the International Thermonuclear Experimental Reactor (ITER). Press reports continue to raise concerns about cost increases and schedule delays for ITER. A revised official estimate of cost and schedule is expected in late FY2010 or FY2011. The House provided the requested amount for fusion, plus $20 million for laser fusion research at the Naval Research Laboratory. The Senate provided $416 million. The final bill provided $426 million, including "no explicit funding" for the Naval Research Laboratory.
The request for the Advanced Research Projects Agency–Energy (ARPA-E) was $10 million, down from the regular FY2009 appropriation of $15 million. This is a new program authorized by the America COMPETES Act. DOE budget documents describe its mission as overcoming long-term, high-risk technological barriers to the development of energy technologies. The bulk of the agency's funding to date is the $400 million it received in the Recovery Act. Neither the House nor the Senate provided FY2010 funding for ARPA-E. The House committee report explained that this was because Recovery Act funds remain available, and "the decision not to provide any additional funding ... does not in any way suggest a lack of commitment to this program by the Committee." The final bill also provided no new funds for ARPA-E.
The request for DOE national security R&D was $3.300 billion, a 2.9% increase from $3.206 billion in FY2009. A proposed increase of $175 million for the naval reactors program included $59 million more for R&D on reactor and power plant technology, as DOE and the Navy initiate development of a successor to the Ohio-class ballistic missile submarine, and $48 million more for refueling, overhaul, and modernization of a prototype reactor plant in upstate New York. A proposed decrease of $66 million for nonproliferation and verification R&D would have resulted mostly from a shift of funding to other DOE nonproliferation activities. The request included no funds for the reliable replacement warhead program. The House provided a total of $3.307 billion, including $25 million more than the request for inertial confinement fusion and $20 million less than the request for development of environmental cleanup technologies for use at DOE defense sites. The Senate provided $3.408 billion, including $16.5 million more than the request for inertial confinement fusion, $40 million more for increased development of nuclear detection technologies, and $30 million less for naval reactor development. The final bill provided a total of $3.296 billion, including $21 million more than the request for inertial confinement fusion, $20 million more for nuclear detection technology, $58 million less for naval reactor development, and $35 million less for defense site environmental cleanup technology.
The request for DOE energy R&D was $3.212 billion, up 1.9% from $3.152 billion in FY2009. This total included increases for R&D on energy efficiency, renewable energy, and the electric power grid and decreases for fossil fuel and nuclear energy R&D. The increases for energy efficiency and renewable energy R&D included $145 million more for solar energy, including $35 million for a new solar electricity innovation hub; $60 million more for vehicle energy efficiency; $98 million more for building energy efficiency, including $35 million for a new innovation hub on energy efficient building systems; and $115 million for RE-ENERGYSE, a new program for education and workforce development in energy science and engineering. These increases would have been partly offset by a $100 million decrease for fuel cell technology. The request would have more than doubled funding for the electricity delivery and energy reliability R&D program, which is being restructured to reflect the Administration's goals for grid modernization; $35 million of the proposed increase would have funded a new energy innovation hub on grid materials, devices, and systems. A proposed 30% reduction for fossil energy R&D resulted from no new funding being requested for the Clean Coal Power Initiative; the department's budget documents noted that this initiative was "already strongly supported" by the $800 million it received under the Recovery Act. This decrease would have been partly offset by the $35 million proposed for a new innovation hub on carbon capture and storage. Within nuclear energy R&D, a proposed reduction of $158 million for Nuclear Power 2010, which is to be concluded in FY2010, was partly offset by a request for $70 million to establish two new energy innovation hubs, one on modeling and simulation and one on extreme materials. The House provided $3.104 billion for energy R&D. Relative to the request, this total included increases of $70 million for nuclear energy, $45 million for vehicle energy efficiency, $45 for fuel cell technology, and $10 million for water power; decreases of $61 million for solar energy, $27 million for building energy efficiency, and $69 million for program direction and support; and no funding for RE-ENERGYSE. The Senate provided $3.072 billion. Relative to the request, this total included increases of $82 million for fossil energy and $10 million for nuclear energy; a decrease of $35 million for smart grid R&D; and a net decrease of $197 million for energy efficiency and renewable energy. The Senate's net decrease for energy efficiency and renewable energy included increases for hydrogen, wind, and water power, decreases in fuel cell technology, solar energy, and program direction and support, and no funding for RE-ENERGYSE. The final bill provided $2.944 billion. Relative to the request, this total included increases of $54 million for fossil energy and $63 million for nuclear energy, a decrease of $49 million for smart grid R&D, and a net decrease of $338 million for energy efficiency and renewable energy. The final net decrease for energy efficiency and renewable energy included increases for hydrogen, wind, and water power, decreases for fuel cell technology, solar energy, and program direction and support, and no funding for RE-ENERGYSE.

	National Science Foundation43

The FY2010 request for the National Science Foundation (NSF) was $7.045 billion, an 8.5% increase ($554.6 million) over the FY2009 estimate of $6.490 billion (see Table 10 ). Under President Obama's Plan for Science and Innovation, the Administration proposed doubling the federal investment in three basic research agencies (NSF, DOE Office of Science, and NIST) over a period of 10 years relative to the FY2006 level. The FY2010 request is intended as an installment toward that doubling effort and is structured to build on the scientific investments funded by the 2009 Omnibus Appropriations Act and the American Recovery and Reinvestment Act of 2009 (ARRA). The Administration anticipates that the largest increases in the Plan will occur in FY2012. 
NSF identified several strategies in the FY2010 budget request, including expanding the scientific workforce and broadening participation from underrepresented groups and geographical regions; increasing three-fold the number of new Graduate Research Fellowships awarded annually; expanding and enhancing international partnerships and interagency collaborations; performing effectively with the highest standards of accountability; and maintaining a portfolio of basic, high-risk, and transformative research across all disciplines. The NSF Director has described transformative research as "a range of endeavors, which promise extraordinary outcomes; such as, revolutionizing entire disciplines, creating entirely new fields, or disrupting accepted theories and perspective." Several reports have recommended that funds be allocated specifically for this type of research. NSF contends that in the global environment of science and engineering, support for transformative, high-risk, high-reward research is critical to U.S. competitiveness. The FY2010 strategies parallel some of the goals contained in the Plan for Science and Innovation and are designed to promote research that will drive innovation; support the design and development of world-class facilities, instrumentation, and infrastructure; and maintain an internationally competitive workforce.
Included in the FY2010 request was $5.733 billion for Research and Related Activities (R&RA), a 10.6% increase ($550.1 million) above the FY2009 estimate of $5.183 billion. R&RA funds research projects, research facilities, and education and training activities. Some in the scientific and academic communities have voiced concerns about the imbalance between support for the life sciences and the physical sciences. Research can be multidisciplinary and transformational, and often discoveries in the physical sciences lead to advances in other disciplines. The America COMPETES Act authorized increased federal research support in the physical sciences, mathematics, and engineering. The FY2010 request would have provided $1.380 billion for the Mathematical and Physical Sciences (MPS) Directorate, a 9.9% increase over the FY2009 level. The MPS portfolio supports investments in fundamental research, facilities, and instruments, and provides approximately 43% of the federal funding for basic research in mathematics and physical sciences conducted at colleges and universities. R&RA includes Integrative Activities (IA), a cross-disciplinary research and education program that is also a source of funding for the acquisition and development of research instrumentation at institutions. The FY2010 request provided $271.1 million for IA. The IA also funds Partnerships for Innovation, disaster research teams, and the Science and Technology Policy Institute. In FY2008, support for the Experimental Program to Stimulate Competitive Research (EPSCoR) was transferred from the Education and Human Resources Directorate (EHR) to IA. NSF's FY2010 request for EPSCoR was $147.1 million, which is a part of the total IA funding request. The FY2010 request supported a portfolio of three complementary strategies—research infrastructure, co-funding, and outreach—for the 27 EPSCoR jurisdictions. Approximately half of the funding for EPSCoR was to be used for a combination of new awards and research infrastructure improvement grants. The remaining half of the funding was to be used to support grants made in previous years. 
The NSF asserts that international research partnerships are critical to the nation in maintaining a competitive edge, addressing global issues, and capitalizing on global economic opportunities. For FY2010, the Administration requested $49.0 million for the Office of International Science and Engineering (OISE), an 11.3% increase over FY2009. The OISE manages NSF's offices in Beijing, Paris, and Tokyo that analyze and report on in-country and regional science and technology policies and developments. The OISE serves as a liaison with research institutes and foreign agencies, and facilitates coordination and implementation of NSF research and education efforts.
The Office of Polar Programs (OPP) is funded in the R&RA. The OPP is the primary source of U.S. support for basic research in polar regions. The NSF also serves in a leadership capacity for several international research partnerships in the Arctic and Antarctic. Research in the Arctic and Antarctic explores the various aspects of the global earth system that affect the global environment and climate. The FY2010 request for polar research was $516.0 million, a 9.6% increase over the FY2009 estimate. Increases in OPP in FY2010 are for arctic and antarctic sciences—glacial and sea ice, terrestrial and marine ecosystems, the ocean and the atmosphere, and biology of life in the cold and dark. Priorities of the OPP in FY2010 include support for national energy goals, support for transformative research, and resupply improvements at the research stations. From FY2006 through FY2008, NSF had the responsibility for funding the operational costs of the U.S. Coast Guard's (USCG) three icebreakers that support scientific research in the polar regions—Polar Sea, Polar Star, and Healy. NSF was responsible for the operation, maintenance, and staffing of the vessels under a Memorandum of Agreement (MOA) between NSF and USCG. Beginning in FY2009, the MOA no longer covers the Polar Star. The Polar Star will be refurbished by the USCG using FY2009 funds. The NSF intends to continue to operate and maintain the Polar Sea and Healy to conduct scientific research. 
NSF supported several interagency R&D priorities in its FY2010 request. It is a lead supporter in the U.S. National Nanotechnology Initiative (NNI), requesting $423.0 million for nanotechnology research. Funding would support research in emerging areas of nanoscale science and technology such as new drug delivery systems, advanced materials, and more powerful computer chips. This funding included $29.9 million for research to explore potential environmental, health, and safety affects of nanotechnology. NSF's other interagency priorities in its FY2010 request included funding for the Climate Change Science Program ($299.9 million), Homeland Security ($385.5 million), and Networking and Information Technology R&D ($1.111 billion).
The NSF supports a variety of centers and center programs. The FY2010 request provided $57.8 million for Science and Technology Centers, $53.6 million for Materials Research Science and Engineering Centers, $66.0 million for Engineering Research Centers, $45.2 million for Nanoscale Science and Engineering Centers, $25.8 million for Science of Learning Centers, $24.0 million for Centers for Chemical Innovation, and $17.4 million for Centers for Analysis and Synthesis.
The FY2010 request for the EHR Directorate was $857.8 million, $12.5 million (1.5%) above the FY2009 estimate. The EHR portfolio is focused on, among other things, increasing the technological literacy of all citizens; preparing the next generation of science, engineering, and mathematics professionals; and closing the achievement gap of underrepresented groups in all scientific fields. Support at the various educational levels in the FY2010 request was as follows: research on learning in formal and informal settings (including precollege), $229.5 million; undergraduate education, $289.9 million; and graduate education, $181.4 million. 
Priorities at the precollege level included research and evaluation on education in science and engineering ($43.0 million), informal science education ($66.0 million), project and program evaluation ($12.0 million), and Discovery Research K-12 ($108.5 million). Discovery Research is structured to combine the strengths of three existing programs and encourage innovative thinking in K-12 science, technology, engineering, and mathematics education.
According to NSF, its undergraduate level programs are designed to "create leverage for institutional change." Priorities at the undergraduate level included the Robert Noyce Scholarship Program ($55.0 million); Curriculum, Laboratory and Instructional Development ($87.0 million); STEM Talent Expansion Program ($31.5 million); and Advanced Technological Education ($64.0 million). The Math and Science Partnership Program (MSP), an interagency program, was proposed at $58.2 million in the FY2010 request. The NSF coordinates its MSP activities with the Department of Education and state-funded MSP sites. At the graduate level, NSF's priorities were Integrative Graduate Education and Research Traineeship ($29.9 million), Graduate Research Fellowships ($102.6 million), and the Graduate Teaching Fellows in K-12 Education ($49.0 million).
Additional EHR priorities supported a portfolio of programs directed at strengthening and expanding the participation of underrepresented groups and diverse institutions in the scientific and engineering enterprise. Among the targeted programs in the FY2010 request were the Historically Black Colleges and Universities Undergraduate Program ($32.0 million), Louis Stokes Alliances for Minority Participation ($44.8 million), and Increasing the Participation and Advancement of Women in Academic Science and Engineering Careers ($1.5 million).
The Major Research Equipment and Facilities Construction (MREFC) account was funded at $117.3 million in the FY2010 request, a decrease of 22.8% from the FY2009 estimate. The MREFC supports the acquisition and construction of major research facilities and equipment that extend the boundaries of science, engineering, and technology. According to NSF, it is the primary federal agency providing support for "forefront instrumentation and facilities for the academic research and education communities." NSF's first priority for funding is support for ongoing projects. Second priority is given to projects that have been approved by the National Science Board for new starts. To qualify for support, NSF required MREFC projects to have "the potential to shift the paradigm in scientific understanding and/or infrastructure technology." The FY2010 request was indicative of NSF's tighter standards and requirements for receiving funding in this account. The FY2010 request includes support for five ongoing projects: Advanced Laser Interferometer Gravitational Wave Observatory ($46.3 million), Atacama Large Millimeter Array ($42.8 million), IceCube Neutrino Observatory ($1.0 million), Advanced Technology Solar Telescope ($10.0 million), and the Ocean Observatories Initiative ($14.3 million).
On February 17, 2009, President Obama signed into law P.L. 111-5 , the American Recovery and Reinvestment Act, 2009 (ARRA). The law increased NSF's FY2009 funding by approximately $3.0 billion. The NSF directed funding from ARRA to the following priorities: 
Support highly rated proposals that would otherwise be declined; Encourage high-risk, transformative research with the potential to grow the nation's economy; Create and sustain research jobs through new awards, graduate research fellows, and early-career researchers; Train and develop the careers of STEM undergraduates, teachers, and professional; Strengthen the nation's overall cyberinfrastructure and enhance institutional broadband access connectivity; and Meet facilities and infrastructure needs, including deferred maintenance.
On May 27, 2009, the NSF announced its first major award made with funding from ARRA—for construction of the Alaska Region Research Vessel ($148.0 million). This vessel has been designed to operate as both an ice-breaker and a research ship. This dual-purpose vessel has the ability to carry as many as 500 people and to stay at sea for as many as 300 days a year. The vessel has an operational life span of 30 years. NSF states that "The three-year construction phase of the project will support 4,350 total jobs, 750 directly at the shipyard and as many as 3,600 in the broader economy." The award announcement noted that NSF intends to ensure that the vessel will be built in a U.S. shipyard.
On June 18, 2009, the House Committee on Appropriations passed H.R. 2847 , the Commerce, Justice, Science, and Related Agencies Appropriations Bill, 2010 ( H.Rept. 111-149 ). The House passed the bill on June 18, 2009. The bill would have provided a total of $6.937 billion for the NSF in FY2010, $108.5 million below the request and $446.1 million above the FY2009 estimate. Included in the total for FY2010 was $5.642 billion for R&RA, $114.3 million for MREFC, and $862.9 million for the EHR. The Senate Appropriations Committee reported the bill on June 25, 2009 ( S.Rept. 111-34 ), and the Senate passed the bill on November 5, 2009. The Senate measure would have provided $6.917 billion for the NSF, $19.7 million below the House-passed bill, $128.2 million below the Administration's request, and $426.4 above the FY2009 estimate. The Senate bill would have provided $5.618 billion for R&RA, $122.3 million for the MREFC, and $857.8 million for the EHR. 
On December 16, 2009, the President signed into law, P.L. 111-117 , the Consolidated Appropriations Act, 2010. The omnibus act includes funding for six appropriations for FY2010, including the CJS appropriations. P.L. 111-117 provides a total of $6.927 billion for the NSF, $436.0 million above the FY2009 estimate and approximately $118.0 million below the President's request. Included in the total for NSF, is $5,617.9 million for R&RA, $872.8 for EHR, and $177.3 million for MREFC.

	Department of Commerce

		National Institute of Standards and Technology49

The National Institute of Standards and Technology (NIST) is a laboratory of the Department of Commerce with a mandate to increase the competitiveness of U.S. companies through appropriate support for industrial development of precompetitive, generic technologies and the diffusion of government-developed technological advances to users in all segments of the American economy. NIST research also provides the measurement, calibration, and quality assurance techniques that underpin U.S. commerce, technological progress, improved product reliability, manufacturing processes, and public safety.
The Consolidated Appropriations Act, 2010, provides $856.6 million in funding for NIST, an increase of 4.6% over the FY2009 appropriation, 1.2% below the Administration's request, 9.7% above the amount in the original House-passed bill, and 2.5% below the figure in the version of the bill passed by the Senate. Support for in-house research and development under the Scientific and Technical Research and Services (STRS) account (including the Baldrige National Quality Program) increases 9.1% to $515.9 million. This figure represents a decrease of 3.7% from the President's budget proposal, an increase of 1.0% from the initial House-passed bill and 1.0% less than the appropriation in the bill originally passed by the Senate.
The Manufacturing Extension Partnership Program (MEP) will receive $124.7 million, 13.4% more than FY2009, and the same amount included in the Administration's budget and both House and Senate bills. Financing for the Technology Innovation Program (TIP) is budgeted at $69.9 million, an increase of 7.5% over the FY2009 appropriation and identical to the funding in the budget proposal and the initial House and Senate legislation. Construction support totals $147.0 million. This figure is 14.5% below FY2009, 25.7% above the President's request, almost twice that included in the original House-passed bill, and 10.3% less than the amount included in the initial Senate-passed legislation.
The President's FY2010 budget requested $846.1 million in funding for NIST, an increase of 3.3% over the FY2009 appropriation. The STRS account (including the Baldrige National Quality Program) would have increased 13.3% to $534.6 million. The Manufacturing Extension Program received $124.7 million, 13.4% more than FY2009, while financing for the Technology Innovation Program was budgeted at $69.9 million, an increase of 7.5% over the previous fiscal year. Construction funding would decline 32.0% to $116.9 million. (See Table 11 .)
The FY2010 Commerce, Justice, Science, and Related Agencies appropriations bill, H.R. 2847 , as originally passed by the House, provided $781.1 million for NIST, 4.6% below FY2009 funding (due primarily to decreased funding for construction) and 7.7% less than the Administration's request. Included in this figure was $510.0 million for the STRS account, 8.1% more than FY2009, but 4.6% below the budget request. As in the President's budget, the $124.7 million in support for MEP represented a 13.4% increase while funding for TIP would have increased 7.5% to $69.9 million. Construction spending totaled $76.5 million, a 55.5% decrease from FY2009 and 7.7% below what the Administration requested. 
The version of H.R. 2847 initially passed by the Senate would have funded NIST at $878.8 million, 7.3% above the previous fiscal year, 3.7% above the President's budget request, and 12.5% more than the House-passed bill. Support for in-house R&D under the STRS account totaled $520.3 million, an increase of 10.2% over FY2009, 2.7% less than the Administration's request, and 2.0% more than the figure in the initial House-passed version. As in the budget request and the House-passed bill, funding for MEP would increase 13.4% to $124.7 million and financing for TIP would increase 7.5% to 69.9 million. The $163.9 million for construction represented a 4.7% decrease from FY2009, but 40.2% more than the Administration's budget figure and over twice that contained in H.R. 2847 as passed by the House.
No final FY2009 appropriations legislation was enacted by the close of the 110 th Congress. P.L. 110-329 , the Consolidated Security, Disaster Assistance, and Continuing Appropriations Act, 2009, provided, in part, funding for NIST at FY2008 levels through March 6, 2009. In the 111 th Congress, P.L. 111-8 , the FY2009 Omnibus Appropriations Act, funds NIST at $819.0 million with the STRS account receiving a 7.2% increase to $472.0 million (including the Baldrige Quality Program). Support for MEP totals $110.0 million, a 22.8% increase, and financing for TIP remains constant at $65.0 million. The $172.0 million for the construction budget reflects a 7.2% increase in funding. 
The American Recovery and Reinvestment Act of 2009, P.L. 111-5 , provided an extra $222.0 million for the STRS account to be used for "research, competitive grants, additional research fellowships and advanced research and measurement equipment and supplies," as noted in the Joint Explanatory Statement of the Committee on Conference. An additional $360.0 million was included for construction, of which $180.0 million "shall be for the competitive construction grant program for research science buildings." The law also directed the transfer of $20.0 million from the Health Information Technology initiative to NIST to "create and test standards related to health security and interoperability in conjunction with partners at the Department of Health and Human Services," according to the Joint Statement. 
As part of the American Competitiveness Initiative, the Bush Administration stated its intention to double over 10 years funding for "innovation-enabling research" performed at NIST through its "core" programs (defined as internal research in the STRS account and the construction budget). To this end, the former President's FY2007 budget requested an increase of 18.3% for intramural R&D at NIST; FY2007 appropriations for these in-house programs increased 9.6%. For FY2008, the omnibus appropriations legislation provided for a small increase in the STRS account. This was in contrast to the Bush Administration's FY2008 budget which included a 15.2% increase in funding, as did the original appropriations bill, H.R. 3093 (110 th Congress), as passed by the House, while the Senate-passed version contained a 15.6% increase. The former President's FY2009 budget request proposed a 21.5% increase in support for the STRS account. Increases in the STRS account were included in the House and Senate appropriations bills during the 110 th Congress, but at amounts less than the budget request. In the 111 th Congress, the Omnibus Appropriations Act, 2009 bill provides a 7.2% increase to both the STRS account and construction, while the American Recovery and Reinvestment Act of 2009 provides significant additional funding for both initiatives. The Consolidated Appropriations Act for 2010 includes an increase of 9.1% for the STRS account while construction spending is 14.5% below the FY2009 appropriation.
Continued funding for the extramural programs at NIST has been a major issue. Support for the Advanced Technology Program was uncertain particularly because opponents objected to large companies receiving research grants. Although Congress maintained (often decreasing) funding for ATP, the initial appropriation bills passed by the House since FY2002 failed to include financing for the program. In FY2006, support for the program was cut 41% and in FY2007, P.L. 110-69 replaced ATP with the Technology Innovation Program, which focuses on small and medium sized firms. The Consolidated Appropriations Act, FY2008, provided funding for this new initiative. The Bush Administration's FY2009 budget request did not include financing for TIP, while the House and Senate bills provided support similar to FY2008. The budget for the Manufacturing Extension Partnership, another extramural program administered by NIST, has also been debated for several years. The former President's FY2009 budget proposal recommended curtailing the federally funded portion of the MEP and provided $2.0 million to accomplish this objective. During the 110 th Congress, the House and Senate appropriation bills included large increases in funding for the program; the FY2009 Omnibus Appropriations Act provided a 22.8% increase in MEP financing while TIP funding remained constant. The Consolidated Appropriations Act, 2010, includes a 13.4% increase in support for MEP and a 7.5% increase in funding for TIP.
For additional information, see CRS Report 95-30, The National Institute of Standards and Technology: An Appropriations Overview ; CRS Report RS22815, The Technology Innovation Program ; and CRS Report 97-104, Manufacturing Extension Partnership Program: An Overview , all by [author name scrubbed].

		National Oceanic and Atmospheric Administration50

The National Oceanic and Atmospheric Administration (NOAA) conducts scientific research in areas such as ecosystems, climate, global climate change, weather, and water; supplies information on the oceans and atmosphere; and conserves coastal and marine organisms and environments. NOAA was created in 1970 by Reorganization Plan No. 4. The reorganization plan was designed to unify the nation's environmental activities and to provide a systematic approach for monitoring, analyzing, and protecting the environment. 
The National Oceanic and Atmospheric Administration's (NOAA) R&D efforts focus on three areas: climate; weather and air quality; and ocean, coastal and Great Lakes resources. For FY2010, President Obama requested $568 million in R&D funding for NOAA, a 7.0% decrease in funding from the FY2009 appropriation level of $611 million. R&D accounted for nearly 12.7% of NOAA's total FY2010 discretionary FY2010 budget request of $4.474 billion. The R&D request consisted of approximately 93% research funding and 7% development funding. About 73% of the R&D request would fund intramural programs and 27% would fund extramural programs.
NOAA's administrative structure has evolved into five line offices that reflect its diverse mission including the National Ocean Service (NOS), the National Marine Fisheries Service (NMFS), the National Environmental Satellite, Data, and Information Service (NESDIS), the National Weather Service (NWS), and the Office of Oceanic and Atmospheric Research (OAR). In addition to NOAA's five line offices, Program Support (PS), a cross-cutting budget activity, includes the Office of Marine and Aviation Services (OMAO). 
OAR is the primary center for research and development within NOAA. OAR would have received $305.9 million for R&D which is 53.9% of the total NOAA FY2010 R&D request and 77.6% of the total OAR request. This was nearly the same as the FY2009 OAR R&D appropriation of $307.1 million. The OAR budget request supported R&D activities such as climate research, weather and air quality research, and ecosystem management. The President's budget included $60.4 million for NOS R&D, $2.1 million less than FY2009 (-3.4%), and $27.6 million for NESDIS, a decrease of approximately $0.8 million (-2.8%). NWS R&D funding would have decreased by $9.4 million to $14.3 million (-39.7%) and OMAO funding would have fallen to $104.0 million, a decrease of $35.0 million (-25.2%). The Administration request would have expanded R&D funding for NMFS to $55.4 million, an increase of $4.9 million (9.7%) ( Table 12 ).
The NOAA FY2010 Budget Summary also provided information on its FY2010 R&D funding request by function: ecosystems, 32%; climate, 31%; weather and water, 14%; commerce and transportation, 1%; and mission support (22%). R&D accomplishments highlighted by NOAA included upgrading the NOAA operation prediction system; developing fishery bycatch reduction devices; predicting harmful algal blooms in the Great Lakes; integrating radar data to enhance weather forecasts and warnings; and implementing the soil moisture observational network.
Research and development funding of NOAA line offices includes both R&D and non-R&D activities. Therefore, there is insufficient information in the House and Senate bills and reports and in the conference report for P.L. 111-117 to determine the precise level of R&D funding for each line office. For the purposes of this report, where specific data are not available, FY2010 R&D line office funding levels provided in Table 12 have been estimated by assuming the proportion of R&D in the 2010 request is similar to line office funding reported in House, Senate, and conference reports. Total NOAA funding also is discussed to provide a general indication of how R&D funding is likely to have fared. 
On June 18, 2009, the House passed the Commerce, Justice, Science, and Related Agencies (CJS) FY2010 appropriations bill which recommended funding of $4.603 billion for NOAA. This was an increase of 5.5% from the FY2009 enacted funding level of $4.365 billion and a 2.9% increase over the Administration's request of $4.474 million. On June 25, 2009, the Senate passed CJS FY2010 appropriations and recommended funding of $4.773 billion for NOAA. This represented an increase of 9.3% compared to the FY2009 enacted level and an increase of 6.7% over the Administration's request. On December, 16, 2009, the President signed the Consolidated Appropriations Act, 2010 (P.L. 111-117) that provided $4.737 billion for NOAA. This represented an increase of 8.5% compared to the FY2009 enacted level and an increase of 5.9% over the Administration's request. 
On February 13, 2009, the 111 th Congress passed the American Recovery and Reinvestment Act (ARRA) of 2009 ( H.R. 1 ), also referred to as the stimulus package. ARRA provided $830 million to NOAA, but only $500,000 of this funding (provided to NWS) was classified as R&D.

	National Aeronautics and Space Administration55

The Administration has requested $13.709 billion for NASA R&D in FY2010. This request is a 5.6% increase over FY2009, in a total NASA budget that would increase by 5.1%. The House bill ( H.R. 2847 as passed by the House) would provide $13.161 billion. The Senate bill ( H.R. 2847 as passed by the Senate) would provide $13.714 million. For details, see Table 13 .
For the past several years, budget priorities throughout NASA have been driven by the Vision for Space Exploration, announced by President Bush in January 2004 and endorsed by Congress in the NASA Authorization Act of 2005 ( P.L. 109-155 ) and the NASA Authorization Act of 2008 ( P.L. 110-422 ). The Vision includes returning the space shuttle to flight status (already accomplished) then retiring it by 2010; completing the International Space Station, but discontinuing U.S. use of it after 2015; returning humans to the moon by 2020; and then sending humans to Mars and "worlds beyond." The priorities established by the Vision are now in question. It is doubtful whether the future-year spending plans provided in NASA's FY2010 budget documents can accommodate the goal of returning humans to the moon. An Administration-requested independent review of NASA's human spaceflight activities (known as the Augustine report) estimated that this goal would require an additional $3 billion per year, even with some schedule delays.
The Administration requested $4.477 billion for Science in FY2010, a 0.6% decrease. Within this total, increases for Earth Science, Planetary Science, and Heliophysics were offset by a decrease for Astrophysics. In Earth Science, NASA is considering its options following the loss of the Orbital Carbon Observatory (OCO), which was launched in February 2009 but failed to reach orbit. Building a replacement for OCO is one of the options being examined, but the funding that would be required was not included in the request. The House increased Earth Science by $15 million and Astrophysics by $50 million; these increases were partly offset by transfers of administrative and construction costs to other accounts, for a net increase in Science of $19 million above the request. The Senate increased Astrophysics by $49 million and Heliophysics by $42 million; these increases were partly offset by a reallocation of unobligated balances from prior years, for a net increase in Science of $40 million above the request. The final appropriation was $4.469 billion, which was $8 million less than the request. Within this amount, increases of $45 million for Earth Science, $32 million for Heliophysics, and $13 million for Planetary Science were more than offset by transfers of administrative and construction costs to other accounts and an unallocated reduction of $59 million. The increase for Earth Science included $25 million, to be supplemented by another $25 million in prior-year unobligated funds, to initiate a replacement for the OCO.
The $3.963 billion requested for Exploration in FY2010 was a 13.1% increase, as the Constellation Systems program ramps up its development of the Orion crew vehicle and Ares I launch vehicle, successors to the space shuttle. According to NASA, the FY2010 request for Constellation Systems and the accompanying funding projections for FY2011 through FY2014 are consistent with achieving an initial operating capability for Orion and Ares I (i.e., a first crewed flight) in March 2015. It is doubtful, however, whether the projected FY2010-FY2014 funding for development of the heavy-lift Ares V launch vehicle, the Altair lunar lander, and lunar surface systems is consistent with returning humans to the moon by 2020. The Augustine report found that 2017 is a more likely date for an initial operating capability and that currently projected budgets would permit a return to the moon no sooner than "well into the 2030s, if ever." The House provided $670 million less than the request for Exploration. The House committee report described this as a deferral without prejudice, in light of the ongoing Augustine review, that "should not be viewed ... as a diminution of the Committee's support for NASA's human space flight program." The Senate provided $23 million less than the request, including the full requested amount for Orion and Ares I, an increase of $75 million for Ares V, a reduction for $46 million for Advanced Capabilities, and a reallocation of $52 million in unobligated balances from prior years. The final appropriation was $3.746 billion, a reduction of $217 million from the request. This total included reductions of $39 million for Constellation Systems and $21 million for Advanced Capabilities, transfers of administrative and construction costs to other accounts, and an unallocated reduction of $52 million. The final bill renamed the Constellation Systems funding line as Human Exploration Architecture Development but prohibited NASA from terminating any aspect of the Constellation architecture or initiating any new alternative unless permitted to do so by a subsequent appropriations act. The conference report stated that the Augustine committee's report
raises issues requiring thoughtful consideration by the Administration and the Congress, before the Committees on Appropriations of the House and Senate can recommend detailed funding levels.... It is premature for the conferees to advocate or initiate significant changes to the current program absent a bona fide proposal from the Administration and subsequent assessment, consideration and enactment by Congress.... It is the expressed hope of the conferees that the Administration will formulate its formal decision soon, submit its recommendations for congressional review and consideration, and budget the necessary resources....
The House bill made most NASA funds available for only one year, rather than the usual two. Approximately 10% of most of NASA's appropriations accounts would have continued to be available for two years. Funds in the new Construction of Facilities and Environmental Compliance and Remediation account would have been available for six years. The Senate bill made all NASA funds available for two years as usual. The final bill made funds for Construction and Environmental Compliance and Remediation available for six years and all other funds available for two years.

	Department of Agriculture61

The FY2010 request for research and education activities in the U.S. Department of Agriculture (USDA) was $2.738 billion, a decrease of $54.0 million (-1.9%) from the FY2009 estimate of $2.792 billion (see Table 14 ). The Agricultural Research Service (ARS) is USDA's in-house basic and applied research agency, and operates approximately 100 laboratories nationwide. The ARS laboratories focus on efficient food and fiber production, development of new products and uses for agricultural commodities, development of effective biocontrols for pest management, and support of USDA regulatory and technical assistance programs. Included in the total support for USDA in FY2010 was $1.173 billion for ARS, $33.6 million below the FY2009 estimate. In ARS, the Administration proposed a reduction of $40.0 million in funding add-ons designated by Congress for research at specific locations. The amounts from the discontinued projects were to be redirected to critical research priorities of the Administration that include genetic and genomic databases, expansion of domestic and global market opportunities, development of new varieties and hybrids of feedstocks, addressing animal health and feed efficiency, and the development of new healthier foods with decreased caloric density. Included in the FY2010 request for ARS was $20.0 million for buildings and facilities.
The National Institute of Food and Agriculture (NIFA), currently the Cooperative State Research, Education, and Extension Service (CSREES), was established in Title VII, Section 7511 of the 2008 Farm Bill. The NIFA will be effective September 20, 2009, and will be responsible for developing linkages between the federal and state "components of a broad-based, national agricultural research, extension, and higher education system." NIFA distributes funds to State Agricultural Experiment Stations, State Cooperative Extension Systems, land-grant universities, and other institutions and organizations that conduct agricultural research, education, and outreach. Included in these partnerships is funding for research at 1862 land-grant institutions, 1890 historically black colleges and universities, 1994 tribal land-grant colleges, and Hispanic-serving institutions. Funding is distributed to the states through competitive awards, statutory formula funding, and special grants. The FY2010 request provided $1.320 billion for NIFA, a decrease of $32.7 million from the FY2009 estimate. The NIFA FY2010 budget included the proposed elimination of $128.0 million in Congressional add-ons. Funding for formula distribution in FY2010 to the state Agricultural Experiment Stations was $288.5 million, almost level with the FY2009 estimate. One of the primary goals of the President's FY2010 NIFA request was to expand competitive, peer-reviewed allocation of research funding. Programs are to be designed that are more responsive to critical national issues such as agricultural security, local and regional emergencies, zoonotic diseases, and pest risk management. Support was given for a competitive program directed at developing training and expanding use of web-based and other technology applications. Funding was provided for programs that improve the quality of rural life and provide stress assistance programs to individuals engaged in agriculture-related occupations. 
The FY2010 request proposed $201.5 million for the Agriculture and Food Research Initiative (AFRI), level funding with the FY2009 estimate. In addition to supporting fundamental and applied science in agriculture, USDA maintains that the AFRI makes a significant contribution to developing the next generation of agricultural scientists by providing graduate students with opportunities to work on research projects. A focus of these efforts is to provide increased opportunities for minority and under-served communities in agricultural science. AFRI funding is to support projects directed at developing alternative methods of biological and chemical conversion of biomass, and research on the impact of a renewable fuels industry on the economic and social dynamics of rural communities. The Administration proposed support for initiatives in agricultural genomics, emerging issues in food and agricultural security, the ecology and economics of biological invasions, and plant biotechnology. Research was proposed that moves beyond water quality issues to extend to water availability, reuse, and conservation.
The FY2010 request for USDA provided $82.5 million for the Economic Research Service (ERS), $2.5 million above the FY2009 estimated level. ERS supports both economic and social science information analysis on agriculture, rural development, food and the environment. ERS collects and disseminates data concerning USDA programs and policies to various stakeholders. Funding for the National Agricultural Statistics Service (NASS) was proposed at $161.8 million in the FY2010 request, $9.8 million above FY2009. The budget includes support to improve research efforts in analyzing the impacts of bioenergy production, and to examine concerns pertaining to feedstock storage, transportation networks, and the vagaries in commodity production. Additional research areas include production and utilization of biomass materials; stocks and prices of distillers' grains; and current and proposed ethanol production plants. Funding for NASS was to allow for the restoration of the chemical use data series on major row crops; post harvest chemical use; and alternating annual fruit, nuts, and vegetable chemical use. Also, funding was provided to fully fund the first year of the 2012 Census of Agriculture's five year cycle. Data from the Census of Agriculture is to be used to measure trends and new developments in the agricultural community. 
In the 111 th Congress, President Obama signed into law the American Recovery and Reinvestment Act of 2009 ( P.L. 111-5 ) (ARRA). The law increased USDA's FY2009 funding by $28.0 billion. Included in ARRA funds for USDA was $128.0 million for ARS buildings and facilities that is characterized as funding for R&D facilities. 
On October 21, 2009, President Obama signed into law the Agriculture, Rural Development, Food and Drug Administration, and Related Agencies Appropriations Act, FY2010, P.L. 111-80 , H.R. 2997. The act provides $2.981 billion for USDA research and education for FY2010, $243.8 million above the Administration's request and $189.8 million above the FY2009 estimate. The appropriation includes $1.251 billion for the ARS, $77.1 million above the request, and $1.487 billion for NIFA, $166.7 million above the Administration's request. The act provides the same level of funding for the ERS and the NASS as the Administration, $82.5 million and $161.8 million respectively.

	Department of the Interior63

President Obama requested $745.1 million for Department of the Interior (DOI) R&D in FY2010, an estimated increase of $44.6 million (8.6%) from FY2009 funding of $700.5 million (see Table 15 ). The U.S. Geological Survey (USGS) is the primary supporter of R&D within DOI, accounting for approximately 87% of the department's total R&D appropriations. President Obama proposed $649.3 million for USGS R&D in FY2010, an increase of $37.2 million (6.1%) from the estimated FY2009 level. This increase is due largely to additional funding requested for three secretarial initiatives—Climate Impacts, A New Energy Frontier, and Changing Arctic Ecosystems—as well as for adjustments for fixed costs and inflation.
In FY2009, the American Recovery and Reinvestment Act ( P.L. 111-5 ) provided an additional $140 million to USGS for R&D related activities such as repair, construction and restoration of facilities; equipment replacement and upgrades; national map activities; and other deferred-maintenance and improvement projects.
USGS R&D is conducted under several activity/program areas: geographic research, geological resources, water resources, biological research, enterprise information, and global change. The President's FY2010 request included increases in each of these areas, though 83.2% of the total USGS R&D increase is in two areas, biological research and global change.
USGS geographic research efforts seek to describe and interpret America's landscape by mapping the nation's terrain, monitoring changes over time, and analyzing how and why these changes have occurred. President Obama's FY2010 budget for geographic research R&D proposed a $0.8 million increase (1.7%) to $46.3 million.
Funding for USGS geological resources R&D in the FY2010 request increased by $4.7 million (2.2%) to $220.5 million from its estimated FY2009 level. The Geological Resources Program assesses the availability and quality of the nation's energy and mineral resources. The Geological Resources Program researches, monitors, and assesses the landscape to understand geological processes to help distinguish natural change from those resulting from human activity. Within the earth sciences, the USGS plays a major role in important geological hazards research, including research on earthquakes and volcanoes. Enterprise Information conducts information science research to enhance the National Map and National Spatial Data infrastructure.
USGS water resources R&D is focused on water availability, water quality and flood hazards. President Obama's FY2010 budget for water resources R&D proposed a $0.7 million increase (0.6%) to $124.0 million.
USGS biological research efforts seek to generate and distribute scientific information that can assist in the conservation and management of the nation's biological resources. President Obama's FY2010 budget request for biological research R&D proposed an increase of $13.5 million (7.2%) to $199.3 million. The USGS Biological Research program serves as DOI's biological research arm, using the capabilities of 17 research centers and associated field stations, one technology center, and 40 cooperative research units that support research on fish, wildlife, and natural habitats. Major research initiatives are carried out by USGS scientists who collect scientific information through research, inventory, and monitoring investigations. These activities develop new methods and techniques to identify, observe, and manage fish and wildlife, including invasive species and their habitats. 
Global climate change R&D received the largest boost in the USGS R&D budget, rising $17.5 million (43.2%) to $58.2 million in FY2010 under President Obama's FY2010 budget request. Enterprise information R&D received a small increase in FY2010 to $1.1 million. 
Among the other DOI agencies, the Minerals Management Service received $44.1 million in the President's FY2010 request, an increase of $5.3 million (13.8%) over the FY2009 appropriated level. This funding level included a $4.8 million increase for the agency's Environmental Studies Program and a reduction of $900,000 through the elimination of congressionally-directed funding provided in FY2009 for the Center for Marine Resources and Environmental Technology. The National Park Service received $29.0 million in the FY2010 request, $2.5 million (9.4%) more than in FY2009. The Bureau of Reclamation received $12.9 million in the FY2010 request, an increase of $0.7 million (5.8%) over FY2009 funding. The Bureau of Land Management received $9.7 million in the FY2010 request, a decrease of $1.3 million (-11.8%) below FY2009 funding.
In late October 2009, Congress completed action on the Department of the Interior, Environment, and Related Agencies Appropriations Act, 2010, ( P.L. 111-88 ) and accompanying report (H.Rept. 111-316). On October 30, 2009, President Obama signed the act into law. 
Within the DOI agencies, R&D funding is generally provided through accounts that include both R&D and non-R&D activities. Therefore there is insufficient information in the House and Senate bills and reports and in P.L. 111-88 to determine the precise level of R&D funding. For purposes of this report, where specific data is not available, FY2010 funding levels have been estimated based on the amounts sought by the department in its request and the proportionate funding levels provided to each DOI agency in the bills and the act, excluding items that are clearly not intended to support R&D and related activities.
Using this approach, it appears that total DOI R&D funding for FY2010 is approximately $759.0 million, an increase of $58.5 million over the FY2009 funding level and $13.9 million above the President's request. The USGS, which accounts for 87% of DOI R&D funding, received an estimated $660.9 million in FY2010 R&D funding, $48.8 million over the FY2009 funding level and $11.6 million above the President's request. 

	Environmental Protection Agency64

The Environmental Protection Agency (EPA), the regulatory agency responsible for carrying out a number of environmental pollution control laws, funds a broad portfolio of R&D activities to provide the necessary scientific tools and knowledge to support decisions relating to preventing, regulating, and abating environmental pollution. Beginning in FY2006, EPA has been funded within the "Interior, Environment, and Related Agencies" appropriations bill. Most of EPA's scientific research activities are funded within the agency's Science and Technology (S&T) appropriations account. This account is funded by a "base" appropriation and a transfer from the Hazardous Substance Superfund (Superfund) account. These transferred funds are dedicated to research on more effective methods to clean up contaminated sites.
Title II of P.L. 111-88 , the Interior, Environment, and Related Agencies appropriations for FY2010 as enacted, provided $872.9 million for the EPA S&T account, including transfers from the Superfund account. The total FY2010 enacted funding for the S&T account was $56.4 million (nearly 7 %) above the FY2009 appropriation of $816.5 million. The appropriations for the EPA's S&T account included in P.L. 111-88 represents 8.5% of the total $10.290 billion included for the agency overall for FY2010. As indicated in Table 16 below, the FY2010 enacted amount was less than that recommended by the House but more than the levels recommended by the Senate and included in the President's FY2010 request for EPA's S&T account, including transfers from the Superfund account. 
The EPA S&T account incorporates elements of the former EPA Research and Development (R&D) account, as well as a portion of the former Salaries and Expenses, and Program Operations accounts, which had been in place until FY1996. Although the Office of Management and Budget (OMB) reports historical and projected budget authority amounts for R&D at EPA (and other federal agencies), OMB documents do not describe how these amounts explicitly relate to the requested and appropriated funding amounts for the many specific EPA program activities. EPA's most recent annual appropriations have been requested, considered, and enacted according to eight statutory appropriations accounts, which were established by Congress during the FY1996 appropriations process. Because of the differences in the scope of the activities included in these accounts, apt comparisons before and after FY1996 are difficult to identify in historical trends in funding for EPA's R&D activities.
The S&T account funds research conducted by universities, foundations, and other non-federal entities with grants awarded by EPA, and research conducted by the agency at its own laboratories and facilities. These R&D activities are managed primarily by EPA's Office of Research and Development (ORD). A large portion of the S&T account funds these activities managed by ORD. However, the account also provides funding for the agency's applied science and technology activities conducted through its program offices (e.g., the Office of Water). Many of the programs implemented by other offices within EPA have a research component, but the research is not necessarily the primary focus of the program.
P.L. 111-88 , similar to the recommendations by the House and the Senate, and the FY2010 President's request, reflected increases of varying levels when compared with the enacted FY2009 appropriations for nearly all of the individual EPA research program and activity line items identified within the S&T account. Research program areas for which there were increases for FY2010 include the climate protection program, clean air and air toxics research, global change research, clean water research, and human health and ecosystem research. Many of these increases, with a few exceptions, were the same or similar to increases included by the House and Senate, and in the President's FY2010 request. However, there are also some increases and decreases when comparing the enacted amounts with those proposed by the House and the Senate, and with the amounts included in the President's FY2010 request.
As an example, the largest increase above FY2009 appropriations for an individual program area included in P.L. 111-88 was $248.4 million for human health and ecosystem research for FY2010. This funding level was $19.0 million (more than 8%) above the $229.4 million FY2009 enacted appropriation, $3.0 million above the $245.4 million recommended by the Senate and included in the President's FY2010 request, but $2.0 million less than the House recommendation. The largest decrease for FY2010 within the S&T account compared to the President's request was for the Water Security Initiative, one of EPA's homeland security activities. The $18.7 million for this program activity included in P.L. 111-88 , the same as the House and the Senate, was above the FY2009 appropriations of $15.0 million, but nearly $5.0 million below the $23.7 million requested for FY2010; a 21.1% decrease. 
P.L. 111-88 included a provision in Title II requiring EPA to conduct a study on domestic and international black carbon emissions using appropriated funds under either the S&T or the Environmental Programs and Management (EPM) appropriations accounts. The study is to include an inventory of the major sources of black carbon, an assessment of the impacts of black carbon on global and regional climate, an assessment of potential metrics and approaches for quantifying the climatic effects of black carbon emissions (including its radiative forcing and warming effects) and comparing those effects to the effects of carbon dioxide and other greenhouse gases, and identification of the cost-effective approaches for mitigating black carbon emissions. EPA is to report the results of the study to committees of Congress as specified in the Conference Report within 18 months. The efforts of EPA and other federal agencies to address climate change and greenhouse gas emissions in general were an area of considerable interest to Congress during the debate on FY2010 appropriations.
The operation and administration of the agency's laboratories and facilities necessitate significant expenditures for rent, utilities, and security. Prior to FY2007, a significant portion of the funding for these expenses had been requested and appropriated within EPA's EPM appropriations account. Beginning in FY2007 increasing portions of funding for these expenses were requested and appropriated within the S&T account. This change affects comparisons of the S&T appropriations over time. Funding for these latter expenses ranged from 8% to 11% of the total S&T account for FY2010, the FY2010 President's request, and the FY2008 and FY2009 enacted appropriations. Comparatively, these expenses were less than 5% in the FY2007 appropriations and 1% in the FY2006 appropriations.
Some Members of Congress and an array of stakeholders have continually raised concerns about the adequacy of funding for scientific research at EPA. The adequacy of funding for EPA's scientific research activities has been part of a broader question about the adequacy of overall federal funding for a broad range of scientific research activities administered by multiple federal agencies. Some Members of Congress, scientists, and environmental organizations have expressed concern about the downward trend in federal resources for scientific research over time. The debate continues to center around the question of whether the regulatory actions of federal agencies are based on "sound science," and how scientific research is applied in developing federal policy.

	Department of Transportation73

President Obama requested $939 million for Department of Transportation (DOT) R&D in FY2010 (see Table 17 ). Two DOT agencies—the Federal Highway Administration (FHWA) and the Federal Aviation Administration (FAA)—account for most of the department's R&D funding (more than 80% in FY2009). 
President Obama requested $360 million for FAA R&D, 8.7% above the FY2009 enacted level. The request included an increase in R&D funding for FAA's Next Generation Air Transportation System (NextGen) which is focused on addressing air traffic growth by increasing the nation's airspace capacity and efficiency and reducing emissions and noise. Funding for NextGen R&D line items in the FAA's Research, Development and Technology FY2010 budget request increased by $39 million (37.3%) under the President's request compared to FY2009 funding. 
No specific figure was available for FHWA R&D funding in the President's FY2010 request. The Department of Transportation receives R&D funds through both the regular appropriations process as well as from the Transportation Trust Fund through authorization legislation. For example, P.L. 109-59 , the Safe, Accountable, Flexible, Efficient Transportation Equity Act—A Legacy for Users (SAFETEA-LU), which became law in August 2005, set DOT surface transportation authorization levels for each fiscal year from FY2005 through FY2009, providing increased DOT R&D funding during this period. However, the SAFETEA-LU Act expired on September 30, 2009, presenting a challenge to agencies that receive funding through this mechanism in the preparation of their FY2010 budget. Thus, according to the Department of Transportation: 
The [Obama] Administration is developing a comprehensive approach for surface transportation reauthorization. Consequently, the [FY2010] Budget contains no policy recommendations for programs subject to reauthorization [which includes R&D], including highway programs. 
For this reason, the Federal Highway Administration and the National Highway Transportation Safety Administration (NHTSA) FY2010 budget justifications provided no specific data on R&D funding for FY2010. Under the President's budget, the Federal Transit Administration received a $0.9 million reduction in R&D funding in FY2010, a decrease of 5.9% from FY2009. The R&D funding levels requested for other DOT agencies remained essentially flat.
The House passed H.R. 3288, the Transportation, Housing and Urban Development, and Related Agencies Appropriations Act, 2010, on July 23, 2009. This bill is accompanied by H.Rept. 111-218 . The Senate passed its version of the bill on September 17, 2009, accompanied by S.Rept. 111-69 . The Legislative Branch Appropriations Act, 2010 ( P.L. 111-68 ), signed into law on September 30, 2009, incorporated a provision for continued funding at FY2009 levels for DOT and other agencies through October 31, 2010, or enactment of their regular appropriations bills. This provision was extended through December 18, 2009, by Division B, Further Continuing Appropriations, 2010, of the Interior-Environment Appropriations Act, 2010 ( P.L. 111-88 ). In December 2009, Congress merged the Transportation-HUD appropriations act and five other regular appropriations bills into the Consolidated Appropriations Act, 2010 ( H.R. 3288 ). This act was signed into law ( P.L. 111-117 ) on December 16, 2009.
Within DOT agencies, R&D funding is generally provided through accounts that include both R&D and non-R&D activities. Therefore there is insufficient information in the House and Senate bills and reports and in P.L. 111-117 to determine the precise level of R&D funding. For purposes of this report, where specific data is not available, FY2010 agency R&D funding levels provided in Table 17 (and discussed below) have been estimated based on the amounts requested by the department in its request and the proportionate funding levels provided to each DOT agency in the bills and the act, excluding items that are clearly not intended to support R&D and related activities.
Using this approach, it appears that total DOT R&D funding for FY2010 is approximately $954 million, an increase of $37 million over the FY2009 funding level and $29 million above the President's request. The FHWA received an estimated $430 million in FY2010 R&D funding, $8 million over the FY2009 funding level and $3 million above the request. The FAA received an estimated $363 million in FY2010 R&D funding, $32 million over the FY2009 funding level and $15 million above the request.

Summary:
In his FY2010 budget request, President Obama sought $147.620 billion for R&D, a $555 million (0.4%) increase from the estimated FY2009 R&D funding level of $147.065 billion (not including FY2009 R&D funding provided under the American Recovery and Reinvestment Act (P.L. 111-5). According to the Obama Administration, preliminary allocations of R&D funding provided under P.L. 111-5 brought total FY2009 R&D funding to $165.400 billion. Unless otherwise noted in this report, comparisons of FY2009 and FY2010 R&D funding do not incorporate funding provided under P.L. 111-5. To the extent possible, the agency discussions in this report include an analysis of House and Senate actions with respect to R&D funding. In some cases, however, there is insufficient information to parse agency R&D funding from other spending to determine precise agency funding levels; estimated funding levels are provided for these agencies.
Congress continues to play a central role in defining the nation's R&D priorities, especially with respect to two overarching issues: the extent to which the Federal R&D investment can grow in the context of increased pressure on discretionary spending and how available funding will be prioritized and allocated. A low or negative growth rate in the overall R&D investment may require movement of resources across disciplines, programs, or agencies to address priorities.
Six federal agencies received 95.1% of total federal R&D spending in the President's FY2010 request: the Department of Defense (54.0%), Department of Health and Human Services (21.0%), National Aeronautics and Space Administration (7.7%), Department of Energy (7.3%), National Science Foundation (3.6%), and Department of Agriculture (1.5%). The President's FY2010 request included $30.884 billion for basic research; $28.139 billion for applied research; $84.054 billion for development; and $4.543 billion for R&D facilities and equipment. The FY2010 request included funding for three multiagency R&D initiatives: National Nanotechnology Initiative, $1.637 billion; Networking and Information Technology R&D program, $3.927 billion; and Climate Change Science Program, $2.026 billion.
President Obama requested increases in the R&D budgets of the three agencies that were targeted for doubling in the America COMPETES Act and by President Bush as part of his American Competitiveness Initiative: the Department of Energy Office of Science (up 3.5%), the National Science Foundation (up 8.6%), and the Department of Commerce National Institute of Standards and Technology's core research and facilities (up 1.2%).
Congress has completed action on all twelve regular FY2010 appropriations bills The final bill, the Department of Defense Appropriations Act, 2010, was passed by Congress and signed into law on December 19, 2009.
For the past four years, federal R&D funding and execution has been affected by mechanisms used to complete the annual appropriations process—the year-long continuing resolution for FY2007 (P.L. 110-5) and the combining of multiple regular appropriations bills into the Consolidated Appropriations Act, 2008 for FY2008 (P.L. 110-161), the Omnibus Appropriations Act, 2009 (P.L. 111-8), and the Consolidated Appropriations Act, 2010 (P.L. 111-117). Completion of appropriations after the beginning of each fiscal year may cause agencies to delay or cancel some planned R&D and equipment acquisition.